Query 024040
Match_columns 273
No_of_seqs 192 out of 1180
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 08:29:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024040.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024040hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0031 CysK Cysteine synthase 100.0 1.4E-64 3.1E-69 437.6 29.9 263 9-273 3-267 (300)
2 PLN03013 cysteine synthase 100.0 6.5E-64 1.4E-68 456.2 30.4 267 6-272 112-378 (429)
3 PLN02565 cysteine synthase 100.0 2.4E-63 5.3E-68 443.6 31.0 267 6-272 4-270 (322)
4 PLN02556 cysteine synthase/L-3 100.0 9.2E-62 2E-66 439.5 30.2 266 7-272 49-314 (368)
5 PLN00011 cysteine synthase 100.0 2.7E-61 5.9E-66 431.5 32.0 272 1-272 1-272 (323)
6 TIGR01136 cysKM cysteine synth 100.0 1.3E-60 2.7E-65 423.6 30.4 260 12-272 2-261 (299)
7 COG1171 IlvA Threonine dehydra 100.0 1.6E-61 3.4E-66 425.7 23.0 262 4-272 12-286 (347)
8 TIGR01139 cysK cysteine syntha 100.0 4.9E-60 1.1E-64 419.7 30.6 259 12-272 2-261 (298)
9 PRK11761 cysM cysteine synthas 100.0 2.6E-60 5.6E-65 420.2 28.7 257 7-272 2-258 (296)
10 TIGR01138 cysM cysteine syntha 100.0 3.9E-59 8.4E-64 411.8 29.7 253 11-272 2-254 (290)
11 PRK10717 cysteine synthase A; 100.0 9.9E-59 2.1E-63 416.7 30.7 265 7-272 3-280 (330)
12 cd01561 CBS_like CBS_like: Thi 100.0 3.6E-58 7.8E-63 406.6 30.8 255 16-272 1-258 (291)
13 PLN02356 phosphateglycerate ki 100.0 3.2E-58 7E-63 418.8 29.5 266 6-272 42-365 (423)
14 PRK08526 threonine dehydratase 100.0 1E-58 2.2E-63 424.6 23.3 260 4-272 7-278 (403)
15 PLN02970 serine racemase 100.0 4.7E-58 1E-62 411.4 24.6 259 5-272 15-284 (328)
16 PRK06382 threonine dehydratase 100.0 4.8E-58 1E-62 422.1 24.3 260 4-272 12-283 (406)
17 PRK07476 eutB threonine dehydr 100.0 9.3E-58 2E-62 408.8 25.3 260 4-272 6-279 (322)
18 PRK12483 threonine dehydratase 100.0 1.1E-57 2.4E-62 426.8 26.0 256 9-272 29-296 (521)
19 KOG1252 Cystathionine beta-syn 100.0 3.6E-58 7.7E-63 395.9 20.2 268 6-273 41-313 (362)
20 TIGR02991 ectoine_eutB ectoine 100.0 2.6E-57 5.5E-62 404.7 25.1 261 3-272 5-279 (317)
21 PRK08198 threonine dehydratase 100.0 1.5E-57 3.2E-62 419.4 24.0 260 4-272 9-280 (404)
22 TIGR01137 cysta_beta cystathio 100.0 8.7E-57 1.9E-61 420.6 28.9 263 8-272 2-273 (454)
23 TIGR02079 THD1 threonine dehyd 100.0 3E-57 6.6E-62 416.5 23.8 261 4-272 3-278 (409)
24 cd06447 D-Ser-dehyd D-Serine d 100.0 4.7E-57 1E-61 411.2 24.7 255 15-272 50-361 (404)
25 PRK08638 threonine dehydratase 100.0 6.1E-57 1.3E-61 404.1 24.8 259 4-272 14-285 (333)
26 PRK08639 threonine dehydratase 100.0 4.5E-57 9.7E-62 417.1 23.1 263 4-272 12-289 (420)
27 cd06448 L-Ser-dehyd Serine deh 100.0 1.4E-56 3E-61 399.8 25.4 253 17-273 1-268 (316)
28 PLN02550 threonine dehydratase 100.0 7.6E-57 1.6E-61 423.6 24.9 255 10-272 102-368 (591)
29 PRK06110 hypothetical protein; 100.0 6.9E-57 1.5E-61 403.2 23.5 260 4-272 8-279 (322)
30 PRK07048 serine/threonine dehy 100.0 9.6E-57 2.1E-61 402.4 23.3 260 4-272 11-282 (321)
31 PRK07334 threonine dehydratase 100.0 8.9E-57 1.9E-61 413.5 22.7 260 4-272 10-279 (403)
32 TIGR01124 ilvA_2Cterm threonin 100.0 2.4E-56 5.3E-61 417.9 25.9 256 9-272 9-276 (499)
33 PRK08813 threonine dehydratase 100.0 2.9E-56 6.3E-61 399.4 24.9 250 4-272 26-286 (349)
34 PRK06815 hypothetical protein; 100.0 2.6E-56 5.6E-61 398.7 23.1 260 4-272 7-279 (317)
35 TIGR01127 ilvA_1Cterm threonin 100.0 2.1E-56 4.5E-61 408.9 23.0 246 18-272 1-258 (380)
36 KOG1250 Threonine/serine dehyd 100.0 2.2E-56 4.7E-61 390.7 21.9 259 6-272 55-325 (457)
37 PRK06608 threonine dehydratase 100.0 4.8E-56 1E-60 399.1 24.6 259 4-272 10-281 (338)
38 PRK02991 D-serine dehydratase; 100.0 7E-56 1.5E-60 408.0 25.9 255 15-272 73-384 (441)
39 TIGR02035 D_Ser_am_lyase D-ser 100.0 2E-55 4.3E-60 403.6 26.4 256 14-272 67-379 (431)
40 PRK09224 threonine dehydratase 100.0 1.5E-55 3.3E-60 414.0 25.8 256 9-272 12-279 (504)
41 PRK08246 threonine dehydratase 100.0 2.8E-55 6.1E-60 390.6 25.7 254 4-272 10-275 (310)
42 cd01562 Thr-dehyd Threonine de 100.0 1.2E-55 2.5E-60 392.8 23.1 262 2-272 2-275 (304)
43 PRK06352 threonine synthase; V 100.0 2.4E-55 5.2E-60 396.9 22.1 254 9-272 20-287 (351)
44 PRK08197 threonine synthase; V 100.0 3.5E-54 7.6E-59 395.3 24.1 254 10-272 72-350 (394)
45 PRK06721 threonine synthase; R 100.0 7.4E-54 1.6E-58 387.5 25.7 255 7-272 18-287 (352)
46 PRK07591 threonine synthase; V 100.0 4.4E-54 9.6E-59 396.8 24.5 255 10-272 82-360 (421)
47 PRK07409 threonine synthase; V 100.0 9.2E-54 2E-58 387.5 25.0 253 9-272 23-291 (353)
48 cd01563 Thr-synth_1 Threonine 100.0 9.3E-54 2E-58 383.8 24.7 255 9-273 14-292 (324)
49 PRK06381 threonine synthase; V 100.0 1.6E-53 3.5E-58 381.4 24.4 256 9-273 7-291 (319)
50 KOG1251 Serine racemase [Signa 100.0 5.4E-54 1.2E-58 354.4 18.9 261 3-272 11-283 (323)
51 PRK06450 threonine synthase; V 100.0 5.8E-53 1.3E-57 378.7 25.0 239 10-272 51-311 (338)
52 PRK08329 threonine synthase; V 100.0 9.4E-53 2E-57 379.6 25.7 244 11-272 58-313 (347)
53 PRK06260 threonine synthase; V 100.0 5.8E-53 1.3E-57 387.5 23.9 253 9-272 59-337 (397)
54 PRK08206 diaminopropionate amm 100.0 9.7E-53 2.1E-57 385.2 23.9 264 5-272 30-344 (399)
55 PLN02569 threonine synthase 100.0 7.8E-52 1.7E-56 385.2 26.7 257 10-273 126-409 (484)
56 PRK05638 threonine synthase; V 100.0 3.4E-51 7.3E-56 380.5 25.4 250 10-272 59-325 (442)
57 cd00640 Trp-synth-beta_II Tryp 100.0 3.3E-50 7.2E-55 347.2 26.9 216 18-272 1-217 (244)
58 TIGR01747 diampropi_NH3ly diam 100.0 3.2E-50 7E-55 365.2 22.6 262 6-272 12-325 (376)
59 TIGR00260 thrC threonine synth 100.0 4.7E-50 1E-54 360.4 23.4 253 9-272 15-293 (328)
60 PRK13028 tryptophan synthase s 100.0 9.3E-49 2E-53 356.6 27.7 259 9-272 53-358 (402)
61 TIGR01415 trpB_rel pyridoxal-p 100.0 1.2E-48 2.5E-53 358.7 28.1 257 7-272 58-374 (419)
62 TIGR03528 2_3_DAP_am_ly diamin 100.0 2.1E-49 4.5E-54 362.1 22.7 256 13-272 37-344 (396)
63 TIGR00263 trpB tryptophan synt 100.0 1.3E-48 2.8E-53 356.7 25.6 259 9-272 41-346 (385)
64 cd06446 Trp-synth_B Tryptophan 100.0 2.3E-48 5.1E-53 353.2 26.3 261 7-273 23-331 (365)
65 PRK04346 tryptophan synthase s 100.0 2.2E-48 4.8E-53 353.6 26.1 259 9-272 49-354 (397)
66 PRK12391 tryptophan synthase s 100.0 1.1E-47 2.3E-52 352.8 28.5 255 12-272 72-383 (427)
67 KOG1481 Cysteine synthase [Ami 100.0 4.6E-49 9.9E-54 330.7 17.5 263 10-273 42-332 (391)
68 PLN02618 tryptophan synthase, 100.0 7.7E-48 1.7E-52 350.7 26.9 262 6-272 54-367 (410)
69 TIGR03844 cysteate_syn cysteat 100.0 2.5E-48 5.4E-53 355.0 21.2 252 12-272 57-349 (398)
70 PRK12390 1-aminocyclopropane-1 100.0 2.5E-48 5.5E-53 350.0 19.7 262 5-272 3-294 (337)
71 TIGR01275 ACC_deam_rel pyridox 100.0 2.2E-48 4.7E-53 347.2 18.7 252 14-272 4-271 (311)
72 PRK03910 D-cysteine desulfhydr 100.0 2.2E-48 4.8E-53 349.6 18.7 260 7-272 5-288 (331)
73 PF00291 PALP: Pyridoxal-phosp 100.0 1.2E-47 2.6E-52 341.2 20.9 250 11-272 1-276 (306)
74 PRK13802 bifunctional indole-3 100.0 8.8E-47 1.9E-51 361.1 27.7 259 10-273 318-631 (695)
75 TIGR01274 ACC_deam 1-aminocycl 100.0 1.6E-47 3.4E-52 344.8 20.6 261 6-272 3-293 (337)
76 cd06449 ACCD Aminocyclopropane 100.0 9.9E-48 2.1E-52 342.2 18.7 248 18-271 1-276 (307)
77 PRK14045 1-aminocyclopropane-1 100.0 6.2E-46 1.3E-50 333.3 18.0 260 5-272 9-286 (329)
78 PRK13803 bifunctional phosphor 100.0 5.7E-45 1.2E-49 348.9 25.7 258 10-272 263-566 (610)
79 COG0498 ThrC Threonine synthas 100.0 4.3E-41 9.2E-46 304.8 20.2 254 10-273 69-344 (411)
80 COG0133 TrpB Tryptophan syntha 100.0 6.6E-33 1.4E-37 237.3 20.3 256 11-271 49-350 (396)
81 COG2515 Acd 1-aminocyclopropan 100.0 6.7E-33 1.4E-37 236.7 16.2 263 5-273 3-283 (323)
82 COG1350 Predicted alternative 100.0 7.4E-31 1.6E-35 225.2 19.4 261 6-272 67-384 (432)
83 PRK09225 threonine synthase; V 100.0 6.3E-30 1.4E-34 236.8 22.1 238 17-272 88-386 (462)
84 cd01560 Thr-synth_2 Threonine 100.0 6.5E-29 1.4E-33 230.1 21.9 240 18-272 88-389 (460)
85 KOG1395 Tryptophan synthase be 100.0 9.5E-28 2.1E-32 207.8 17.7 255 13-272 118-419 (477)
86 COG3048 DsdA D-serine dehydrat 99.9 9.6E-25 2.1E-29 186.2 16.7 257 13-272 74-387 (443)
87 PF03808 Glyco_tran_WecB: Glyc 91.8 1.5 3.2E-05 35.6 8.7 101 80-187 12-114 (172)
88 cd08230 glucose_DH Glucose deh 88.2 4.2 9.1E-05 36.6 9.6 54 65-119 170-223 (355)
89 PF05368 NmrA: NmrA-like famil 86.3 15 0.00032 30.8 11.4 50 72-122 2-51 (233)
90 cd06533 Glyco_transf_WecG_TagA 85.9 8.5 0.00018 31.1 9.2 120 80-207 10-131 (171)
91 TIGR03366 HpnZ_proposed putati 85.9 6.8 0.00015 34.0 9.3 59 59-120 112-170 (280)
92 TIGR03201 dearomat_had 6-hydro 85.8 12 0.00027 33.5 11.2 58 60-121 159-216 (349)
93 COG0604 Qor NADPH:quinone redu 84.2 12 0.00026 33.7 10.2 57 62-121 137-193 (326)
94 cd08294 leukotriene_B4_DH_like 83.6 17 0.00036 31.9 10.9 58 61-121 137-194 (329)
95 TIGR02819 fdhA_non_GSH formald 83.5 19 0.0004 33.2 11.4 56 61-119 179-234 (393)
96 PF01041 DegT_DnrJ_EryC1: DegT 83.4 2.7 5.9E-05 38.2 5.8 86 71-156 42-129 (363)
97 PF01210 NAD_Gly3P_dh_N: NAD-d 82.4 2.9 6.2E-05 33.3 4.9 42 72-116 2-43 (157)
98 KOG0025 Zn2+-binding dehydroge 82.3 13 0.00027 33.1 9.0 87 33-123 124-217 (354)
99 PF02826 2-Hacid_dh_C: D-isome 81.9 23 0.0005 28.7 10.2 104 71-197 38-143 (178)
100 cd01075 NAD_bind_Leu_Phe_Val_D 81.3 21 0.00045 29.6 9.9 66 49-118 6-75 (200)
101 TIGR00696 wecB_tagA_cpsF bacte 80.5 18 0.00038 29.6 9.0 97 81-185 13-111 (177)
102 TIGR02825 B4_12hDH leukotriene 78.9 31 0.00067 30.4 10.9 58 61-121 132-189 (325)
103 TIGR03451 mycoS_dep_FDH mycoth 78.6 26 0.00057 31.5 10.5 57 61-120 170-226 (358)
104 cd08281 liver_ADH_like1 Zinc-d 78.6 27 0.0006 31.6 10.7 57 61-120 185-241 (371)
105 PRK09880 L-idonate 5-dehydroge 78.1 23 0.0005 31.6 10.0 59 60-121 162-220 (343)
106 COG0159 TrpA Tryptophan syntha 77.8 23 0.0005 30.9 9.2 68 50-122 109-178 (265)
107 cd08295 double_bond_reductase_ 77.8 32 0.00069 30.5 10.8 57 61-120 145-202 (338)
108 TIGR01064 pyruv_kin pyruvate k 77.7 45 0.00097 31.8 12.0 124 83-212 261-407 (473)
109 COG1064 AdhP Zn-dependent alco 77.6 16 0.00036 33.0 8.6 61 58-122 157-217 (339)
110 PF00107 ADH_zinc_N: Zinc-bind 77.3 13 0.00028 27.9 7.0 39 81-122 3-41 (130)
111 TIGR00670 asp_carb_tr aspartat 77.2 16 0.00034 32.6 8.3 59 62-122 145-208 (301)
112 TIGR02822 adh_fam_2 zinc-bindi 77.1 13 0.00028 33.2 7.9 57 60-120 158-214 (329)
113 PF00070 Pyr_redox: Pyridine n 76.8 21 0.00046 24.4 7.7 49 72-120 2-59 (80)
114 cd08256 Zn_ADH2 Alcohol dehydr 76.8 42 0.0009 29.9 11.2 57 61-120 168-224 (350)
115 PRK09424 pntA NAD(P) transhydr 76.6 13 0.00027 35.8 8.0 52 67-122 164-215 (509)
116 cd08274 MDR9 Medium chain dehy 76.2 31 0.00066 30.6 10.2 57 60-120 170-226 (350)
117 cd08233 butanediol_DH_like (2R 76.1 44 0.00094 29.8 11.2 58 61-121 166-223 (351)
118 PRK12771 putative glutamate sy 75.7 7.1 0.00015 37.8 6.3 54 66-120 135-206 (564)
119 PF04127 DFP: DNA / pantothena 75.0 17 0.00037 29.9 7.4 61 72-141 23-83 (185)
120 PF09837 DUF2064: Uncharacteri 74.9 34 0.00075 26.0 9.2 98 84-187 2-100 (122)
121 PLN03154 putative allyl alcoho 74.3 54 0.0012 29.4 11.3 57 62-121 153-210 (348)
122 cd08293 PTGR2 Prostaglandin re 74.2 49 0.0011 29.3 11.0 58 62-122 147-208 (345)
123 COG2518 Pcm Protein-L-isoaspar 73.6 33 0.00071 28.9 8.8 109 54-184 59-171 (209)
124 KOG0024 Sorbitol dehydrogenase 73.4 19 0.00042 32.4 7.7 63 57-122 159-221 (354)
125 TIGR03538 DapC_gpp succinyldia 72.4 50 0.0011 30.1 10.8 81 41-123 61-145 (393)
126 PRK10309 galactitol-1-phosphat 71.9 28 0.0006 31.1 8.8 58 60-120 153-210 (347)
127 cd08239 THR_DH_like L-threonin 71.8 33 0.00072 30.4 9.3 58 60-120 156-213 (339)
128 cd00401 AdoHcyase S-adenosyl-L 71.6 19 0.00042 33.5 7.8 53 63-119 197-249 (413)
129 PLN02740 Alcohol dehydrogenase 71.3 29 0.00062 31.6 8.9 57 61-120 192-248 (381)
130 PRK15408 autoinducer 2-binding 71.2 78 0.0017 28.4 17.7 146 53-208 70-242 (336)
131 PRK14030 glutamate dehydrogena 70.7 32 0.00069 32.4 9.0 53 48-100 207-259 (445)
132 COG2130 Putative NADP-dependen 70.5 46 0.001 29.8 9.3 58 60-120 143-201 (340)
133 cd08301 alcohol_DH_plants Plan 70.5 36 0.00079 30.7 9.3 57 61-120 181-237 (369)
134 cd08297 CAD3 Cinnamyl alcohol 70.1 55 0.0012 28.9 10.3 54 64-120 162-215 (341)
135 cd08300 alcohol_DH_class_III c 69.9 31 0.00067 31.2 8.7 57 61-120 180-236 (368)
136 PF00107 ADH_zinc_N: Zinc-bind 69.6 19 0.00042 26.9 6.3 83 108-209 7-90 (130)
137 cd08292 ETR_like_2 2-enoyl thi 69.5 54 0.0012 28.6 10.0 56 61-119 133-188 (324)
138 cd08289 MDR_yhfp_like Yhfp put 69.3 40 0.00087 29.4 9.2 50 68-120 147-196 (326)
139 PRK13656 trans-2-enoyl-CoA red 69.3 98 0.0021 28.8 11.9 57 40-99 14-73 (398)
140 cd08277 liver_alcohol_DH_like 68.8 37 0.00079 30.7 9.0 57 61-120 178-234 (365)
141 PRK15481 transcriptional regul 68.7 69 0.0015 29.7 10.9 80 71-154 143-225 (431)
142 cd08287 FDH_like_ADH3 formalde 68.7 78 0.0017 28.0 11.0 54 62-118 163-216 (345)
143 cd08296 CAD_like Cinnamyl alco 68.5 67 0.0015 28.4 10.5 53 64-120 160-212 (333)
144 TIGR02818 adh_III_F_hyde S-(hy 68.4 44 0.00095 30.3 9.4 57 61-120 179-235 (368)
145 COG2242 CobL Precorrin-6B meth 67.9 63 0.0014 26.7 9.1 155 33-212 7-164 (187)
146 TIGR01751 crot-CoA-red crotony 67.7 41 0.0009 30.8 9.2 56 63-121 185-240 (398)
147 cd08285 NADP_ADH NADP(H)-depen 67.4 68 0.0015 28.6 10.4 57 60-119 159-215 (351)
148 PRK12823 benD 1,6-dihydroxycyc 67.2 49 0.0011 27.9 9.0 72 69-140 9-81 (260)
149 PRK06348 aspartate aminotransf 67.2 99 0.0022 28.1 13.0 78 41-122 63-141 (384)
150 cd08242 MDR_like Medium chain 67.1 54 0.0012 28.6 9.5 57 60-120 148-204 (319)
151 KOG0023 Alcohol dehydrogenase, 66.6 28 0.00061 31.4 7.2 60 60-123 175-234 (360)
152 PRK05396 tdh L-threonine 3-deh 66.3 48 0.001 29.4 9.1 52 66-120 162-213 (341)
153 PRK12779 putative bifunctional 66.3 41 0.00088 35.0 9.5 31 70-100 307-337 (944)
154 TIGR01316 gltA glutamate synth 66.3 29 0.00062 32.6 7.9 51 71-121 274-329 (449)
155 PF00185 OTCace: Aspartate/orn 65.7 21 0.00045 28.5 5.9 45 78-122 13-65 (158)
156 PTZ00079 NADP-specific glutama 65.7 48 0.001 31.4 9.0 52 49-100 217-268 (454)
157 PRK07550 hypothetical protein; 65.6 1.1E+02 0.0023 27.8 11.6 76 44-123 67-143 (386)
158 PF00106 adh_short: short chai 65.1 62 0.0014 25.0 9.0 54 71-124 3-60 (167)
159 TIGR00561 pntA NAD(P) transhyd 65.0 32 0.00069 33.1 7.9 49 71-122 166-214 (511)
160 PRK08628 short chain dehydroge 64.9 70 0.0015 26.9 9.5 55 69-123 8-62 (258)
161 COG0800 Eda 2-keto-3-deoxy-6-p 64.9 85 0.0018 26.4 10.2 90 52-153 27-116 (211)
162 COG1751 Uncharacterized conser 64.2 73 0.0016 25.5 8.5 74 43-121 7-89 (186)
163 PRK06935 2-deoxy-D-gluconate 3 63.6 73 0.0016 26.9 9.4 54 69-122 16-69 (258)
164 PRK13394 3-hydroxybutyrate deh 63.5 72 0.0016 26.8 9.4 55 69-123 8-63 (262)
165 cd08246 crotonyl_coA_red croto 63.5 34 0.00073 31.2 7.7 54 64-120 190-243 (393)
166 cd08288 MDR_yhdh Yhdh putative 63.4 65 0.0014 28.1 9.3 51 67-120 146-196 (324)
167 PF07279 DUF1442: Protein of u 63.4 41 0.00089 28.4 7.3 57 57-116 33-94 (218)
168 PLN02827 Alcohol dehydrogenase 63.3 65 0.0014 29.3 9.5 57 61-120 187-243 (378)
169 PRK12481 2-deoxy-D-gluconate 3 63.2 78 0.0017 26.7 9.5 53 69-122 9-61 (251)
170 PRK07109 short chain dehydroge 63.1 54 0.0012 29.3 8.8 55 69-123 9-64 (334)
171 cd08298 CAD2 Cinnamyl alcohol 63.0 55 0.0012 28.7 8.8 54 61-118 161-214 (329)
172 PRK15438 erythronate-4-phospha 63.0 1E+02 0.0022 28.5 10.6 129 44-197 88-223 (378)
173 COG0399 WecE Predicted pyridox 63.0 59 0.0013 30.0 9.0 87 70-156 50-138 (374)
174 cd08284 FDH_like_2 Glutathione 62.9 54 0.0012 28.9 8.8 53 63-118 163-215 (344)
175 PRK12743 oxidoreductase; Provi 62.6 57 0.0012 27.6 8.5 71 70-140 4-77 (256)
176 PRK08226 short chain dehydroge 62.3 69 0.0015 27.0 9.0 54 69-122 7-60 (263)
177 PRK12809 putative oxidoreducta 62.0 30 0.00064 34.2 7.4 52 70-121 311-380 (639)
178 COG0078 ArgF Ornithine carbamo 61.6 51 0.0011 29.4 7.9 56 68-123 153-214 (310)
179 PRK08589 short chain dehydroge 61.5 65 0.0014 27.6 8.8 54 69-122 7-60 (272)
180 PRK08306 dipicolinate synthase 61.4 87 0.0019 27.7 9.6 48 68-119 152-199 (296)
181 TIGR01832 kduD 2-deoxy-D-gluco 61.0 96 0.0021 25.8 9.7 54 69-123 6-59 (248)
182 PRK06139 short chain dehydroge 61.0 55 0.0012 29.3 8.5 54 69-122 8-62 (330)
183 PRK00257 erythronate-4-phospha 60.9 1.3E+02 0.0027 27.9 10.8 123 44-191 88-215 (381)
184 PRK08703 short chain dehydroge 60.8 96 0.0021 25.7 10.3 32 69-100 7-38 (239)
185 PF00764 Arginosuc_synth: Argi 60.8 1.4E+02 0.0031 27.6 12.2 127 72-206 1-138 (388)
186 PRK12831 putative oxidoreducta 60.6 45 0.00097 31.5 8.1 51 71-121 283-338 (464)
187 PF00290 Trp_syntA: Tryptophan 60.6 1.1E+02 0.0025 26.5 10.8 69 48-121 100-170 (259)
188 PRK03692 putative UDP-N-acetyl 60.5 70 0.0015 27.5 8.5 94 81-185 69-168 (243)
189 cd05313 NAD_bind_2_Glu_DH NAD( 60.4 84 0.0018 27.3 9.0 52 49-100 18-69 (254)
190 PRK10754 quinone oxidoreductas 60.3 1.2E+02 0.0025 26.5 11.0 55 62-119 135-189 (327)
191 TIGR00692 tdh L-threonine 3-de 59.9 83 0.0018 27.8 9.4 52 65-119 159-210 (340)
192 PRK02610 histidinol-phosphate 59.8 75 0.0016 28.8 9.3 52 72-123 94-145 (374)
193 PF13561 adh_short_C2: Enoyl-( 59.8 47 0.001 27.8 7.5 48 76-123 4-53 (241)
194 PTZ00354 alcohol dehydrogenase 59.5 1.2E+02 0.0026 26.4 11.3 56 63-121 136-191 (334)
195 cd08278 benzyl_alcohol_DH Benz 59.4 1.2E+02 0.0026 27.3 10.4 56 62-120 181-236 (365)
196 cd08243 quinone_oxidoreductase 59.1 88 0.0019 26.9 9.3 55 63-120 138-192 (320)
197 PLN02918 pyridoxine (pyridoxam 59.0 82 0.0018 30.6 9.5 49 70-118 137-192 (544)
198 PF01262 AlaDh_PNT_C: Alanine 59.0 44 0.00095 26.7 6.8 49 71-122 22-70 (168)
199 PLN02178 cinnamyl-alcohol dehy 58.9 43 0.00093 30.6 7.5 52 66-120 177-228 (375)
200 PLN02586 probable cinnamyl alc 58.5 70 0.0015 28.9 8.8 55 63-120 179-233 (360)
201 PRK08993 2-deoxy-D-gluconate 3 58.5 1.1E+02 0.0024 25.7 10.2 54 69-123 11-64 (253)
202 cd08291 ETR_like_1 2-enoyl thi 58.4 76 0.0017 27.8 8.9 51 69-122 144-195 (324)
203 PRK07097 gluconate 5-dehydroge 57.8 87 0.0019 26.5 8.9 55 69-123 11-66 (265)
204 PF08659 KR: KR domain; Inter 57.2 68 0.0015 25.8 7.7 53 72-124 4-61 (181)
205 PRK08277 D-mannonate oxidoredu 56.9 1E+02 0.0022 26.4 9.2 55 69-123 11-66 (278)
206 PRK10083 putative oxidoreducta 56.9 1.3E+02 0.0028 26.4 10.2 58 60-120 153-211 (339)
207 PLN00175 aminotransferase fami 56.6 1.7E+02 0.0036 27.1 12.1 51 72-123 118-168 (413)
208 COG1063 Tdh Threonine dehydrog 56.6 1.5E+02 0.0033 26.7 14.6 50 71-122 171-221 (350)
209 COG0623 FabI Enoyl-[acyl-carri 56.6 68 0.0015 27.6 7.5 68 109-183 26-93 (259)
210 cd05211 NAD_bind_Glu_Leu_Phe_V 56.5 64 0.0014 27.2 7.6 52 50-101 4-55 (217)
211 cd08282 PFDH_like Pseudomonas 56.5 90 0.0019 28.2 9.2 55 61-118 170-224 (375)
212 cd08267 MDR1 Medium chain dehy 56.4 93 0.002 26.8 9.0 51 63-117 139-189 (319)
213 cd08245 CAD Cinnamyl alcohol d 56.0 93 0.002 27.2 9.0 55 63-121 158-212 (330)
214 cd08258 Zn_ADH4 Alcohol dehydr 55.8 1.4E+02 0.003 26.0 10.6 54 62-117 159-212 (306)
215 PRK05786 fabG 3-ketoacyl-(acyl 55.8 97 0.0021 25.5 8.7 33 69-101 6-38 (238)
216 PRK09147 succinyldiaminopimela 55.7 1.6E+02 0.0035 26.7 13.7 78 43-123 64-146 (396)
217 cd08244 MDR_enoyl_red Possible 55.0 1.3E+02 0.0028 26.0 9.8 55 61-118 136-190 (324)
218 PRK12775 putative trifunctiona 54.9 1.6E+02 0.0034 31.0 11.5 30 71-100 432-461 (1006)
219 cd08240 6_hydroxyhexanoate_dh_ 54.6 1.5E+02 0.0034 26.2 10.8 51 66-119 174-224 (350)
220 cd08231 MDR_TM0436_like Hypoth 54.5 1.6E+02 0.0034 26.3 12.4 53 63-119 173-226 (361)
221 PRK07523 gluconate 5-dehydroge 54.4 1.1E+02 0.0023 25.8 8.8 54 69-122 11-65 (255)
222 PRK08862 short chain dehydroge 54.4 1E+02 0.0022 25.7 8.6 54 69-122 6-60 (227)
223 PRK06114 short chain dehydroge 54.2 1.3E+02 0.0028 25.2 10.1 54 69-122 9-64 (254)
224 PRK05557 fabG 3-ketoacyl-(acyl 54.1 1.2E+02 0.0027 24.9 9.6 54 70-123 7-62 (248)
225 PLN02702 L-idonate 5-dehydroge 54.1 1.2E+02 0.0027 27.1 9.7 57 61-120 175-231 (364)
226 PRK09422 ethanol-active dehydr 53.9 1.5E+02 0.0033 26.0 10.1 57 61-121 156-213 (338)
227 PRK06172 short chain dehydroge 53.7 1.1E+02 0.0024 25.6 8.8 55 69-123 8-63 (253)
228 PRK12939 short chain dehydroge 53.7 1.2E+02 0.0026 25.2 9.0 55 69-123 8-63 (250)
229 TIGR00936 ahcY adenosylhomocys 53.7 59 0.0013 30.3 7.4 97 63-187 190-286 (406)
230 KOG2862 Alanine-glyoxylate ami 53.7 1.7E+02 0.0037 26.4 10.7 83 71-154 70-155 (385)
231 PRK10490 sensor protein KdpD; 53.3 2.8E+02 0.0061 28.7 13.3 107 70-183 252-375 (895)
232 PRK05826 pyruvate kinase; Prov 53.3 1.9E+02 0.004 27.6 10.8 125 83-212 263-407 (465)
233 cd05282 ETR_like 2-enoyl thioe 53.1 1.5E+02 0.0033 25.6 10.1 54 62-118 133-186 (323)
234 cd08259 Zn_ADH5 Alcohol dehydr 53.1 1.2E+02 0.0026 26.3 9.3 53 63-118 158-210 (332)
235 cd05281 TDH Threonine dehydrog 52.6 1.1E+02 0.0023 27.1 8.9 51 66-119 162-212 (341)
236 PRK05993 short chain dehydroge 52.5 1.5E+02 0.0032 25.4 10.7 52 69-123 5-56 (277)
237 cd05279 Zn_ADH1 Liver alcohol 52.4 1.7E+02 0.0036 26.3 10.2 54 61-117 177-230 (365)
238 cd05285 sorbitol_DH Sorbitol d 52.4 1.4E+02 0.003 26.4 9.6 58 60-120 155-212 (343)
239 PRK07792 fabG 3-ketoacyl-(acyl 52.3 1.3E+02 0.0028 26.3 9.3 56 69-124 13-70 (306)
240 PRK12937 short chain dehydroge 52.3 1.3E+02 0.0029 24.8 9.6 55 69-123 6-62 (245)
241 TIGR02823 oxido_YhdH putative 52.3 1.2E+02 0.0025 26.4 9.0 53 65-120 142-195 (323)
242 cd08299 alcohol_DH_class_I_II_ 52.2 1.1E+02 0.0024 27.7 9.0 54 61-117 184-237 (373)
243 PRK11706 TDP-4-oxo-6-deoxy-D-g 52.2 48 0.001 30.2 6.6 54 71-124 48-101 (375)
244 cd08269 Zn_ADH9 Alcohol dehydr 51.8 1.6E+02 0.0034 25.4 11.3 54 61-118 123-177 (312)
245 cd08276 MDR7 Medium chain dehy 51.7 1.6E+02 0.0035 25.5 10.8 54 63-120 156-209 (336)
246 cd08264 Zn_ADH_like2 Alcohol d 51.3 1.1E+02 0.0023 26.8 8.6 49 62-117 157-205 (325)
247 PRK08063 enoyl-(acyl carrier p 51.3 1.4E+02 0.0031 24.8 9.8 55 69-123 5-61 (250)
248 PRK12828 short chain dehydroge 51.2 1.4E+02 0.0029 24.5 9.2 55 69-123 8-63 (239)
249 PRK06182 short chain dehydroge 51.2 1.5E+02 0.0033 25.1 10.9 67 69-139 4-70 (273)
250 PRK07666 fabG 3-ketoacyl-(acyl 51.0 1.4E+02 0.0031 24.6 9.0 54 70-123 9-63 (239)
251 TIGR01318 gltD_gamma_fam gluta 50.9 73 0.0016 30.1 7.8 50 71-120 143-210 (467)
252 PRK08217 fabG 3-ketoacyl-(acyl 50.8 1.3E+02 0.0029 24.9 8.8 54 69-122 6-60 (253)
253 PRK06181 short chain dehydroge 50.7 1.2E+02 0.0027 25.4 8.7 53 70-122 3-56 (263)
254 PRK12810 gltD glutamate syntha 50.7 84 0.0018 29.7 8.2 50 71-120 145-212 (471)
255 PRK07478 short chain dehydroge 50.6 1.4E+02 0.0029 25.1 8.9 72 69-140 7-80 (254)
256 PRK14807 histidinol-phosphate 50.6 1.9E+02 0.004 25.9 10.5 52 72-124 79-130 (351)
257 TIGR02853 spore_dpaA dipicolin 50.6 1.8E+02 0.0038 25.6 10.4 83 30-118 112-197 (287)
258 cd08262 Zn_ADH8 Alcohol dehydr 50.4 1.6E+02 0.0034 25.9 9.6 55 61-118 155-209 (341)
259 PRK06702 O-acetylhomoserine am 50.4 2.2E+02 0.0048 26.7 11.0 78 72-154 79-160 (432)
260 PF00091 Tubulin: Tubulin/FtsZ 50.2 59 0.0013 27.1 6.4 99 151-257 90-203 (216)
261 PRK12935 acetoacetyl-CoA reduc 50.1 1.5E+02 0.0032 24.6 9.0 56 69-124 7-64 (247)
262 cd05288 PGDH Prostaglandin deh 50.1 1.7E+02 0.0037 25.4 10.6 54 63-119 141-195 (329)
263 PRK11658 UDP-4-amino-4-deoxy-L 50.1 1.5E+02 0.0032 27.1 9.5 52 72-123 51-102 (379)
264 PLN02527 aspartate carbamoyltr 50.0 1.1E+02 0.0023 27.3 8.3 51 72-122 154-210 (306)
265 PRK07454 short chain dehydroge 49.9 1.3E+02 0.0028 24.9 8.6 70 70-139 8-79 (241)
266 PRK07890 short chain dehydroge 49.9 1.4E+02 0.003 24.9 8.9 54 69-122 6-60 (258)
267 PRK08643 acetoin reductase; Va 49.8 1.5E+02 0.0033 24.7 9.5 54 70-123 4-58 (256)
268 PRK08261 fabG 3-ketoacyl-(acyl 49.8 2.1E+02 0.0046 26.5 10.7 56 68-123 210-265 (450)
269 TIGR02824 quinone_pig3 putativ 49.7 1.7E+02 0.0036 25.1 11.0 57 61-120 133-189 (325)
270 KOG1201 Hydroxysteroid 17-beta 49.6 1.9E+02 0.0041 25.8 10.8 73 69-142 39-113 (300)
271 PRK12769 putative oxidoreducta 49.5 35 0.00076 33.8 5.6 51 70-120 328-396 (654)
272 TIGR02379 ECA_wecE TDP-4-keto- 49.4 1.1E+02 0.0024 27.9 8.6 54 71-124 48-101 (376)
273 PLN02514 cinnamyl-alcohol dehy 49.2 1.4E+02 0.0031 26.7 9.2 55 63-120 176-230 (357)
274 cd05280 MDR_yhdh_yhfp Yhdh and 49.2 1.4E+02 0.0031 25.8 9.0 48 69-119 148-195 (325)
275 cd08250 Mgc45594_like Mgc45594 49.2 1.8E+02 0.0039 25.3 10.9 54 63-119 135-188 (329)
276 PRK08303 short chain dehydroge 49.0 1.7E+02 0.0036 25.8 9.4 72 69-140 9-92 (305)
277 PRK12938 acetyacetyl-CoA reduc 49.0 1.5E+02 0.0032 24.6 8.8 54 69-122 4-59 (246)
278 PLN03050 pyridoxine (pyridoxam 48.9 70 0.0015 27.6 6.7 48 70-117 62-116 (246)
279 PRK06836 aspartate aminotransf 48.7 2.1E+02 0.0046 26.0 11.5 51 72-123 99-149 (394)
280 PF12000 Glyco_trans_4_3: Gkyc 48.7 35 0.00075 27.7 4.5 41 161-207 54-94 (171)
281 PRK06194 hypothetical protein; 48.6 1.7E+02 0.0037 25.0 9.4 55 69-123 7-62 (287)
282 PRK05876 short chain dehydroge 48.6 1.6E+02 0.0034 25.3 9.1 55 69-123 7-62 (275)
283 PRK13376 pyrB bifunctional asp 48.5 95 0.0021 30.0 8.1 51 72-122 177-233 (525)
284 TIGR01470 cysG_Nterm siroheme 48.4 1.6E+02 0.0034 24.5 9.8 33 71-103 11-43 (205)
285 PRK06567 putative bifunctional 48.3 1.4E+02 0.0029 31.5 9.5 31 70-100 384-414 (1028)
286 PF02737 3HCDH_N: 3-hydroxyacy 48.3 35 0.00076 27.7 4.6 30 72-101 2-31 (180)
287 PRK10669 putative cation:proto 48.1 80 0.0017 30.6 7.8 51 70-123 418-468 (558)
288 PRK12826 3-ketoacyl-(acyl-carr 48.0 1.6E+02 0.0034 24.3 8.9 55 69-123 7-62 (251)
289 PRK08278 short chain dehydroge 48.0 1.8E+02 0.0038 24.9 9.9 55 69-123 7-69 (273)
290 cd08255 2-desacetyl-2-hydroxye 47.9 1.5E+02 0.0032 25.2 8.8 51 61-115 91-142 (277)
291 PRK05866 short chain dehydroge 47.9 1.4E+02 0.0031 25.9 8.8 53 70-122 42-95 (293)
292 PRK01688 histidinol-phosphate 47.8 1.1E+02 0.0025 27.4 8.3 52 72-124 77-129 (351)
293 TIGR02817 adh_fam_1 zinc-bindi 47.8 1.7E+02 0.0036 25.6 9.4 50 68-120 149-199 (336)
294 PRK05653 fabG 3-ketoacyl-(acyl 47.5 1.6E+02 0.0034 24.2 9.0 54 69-122 6-60 (246)
295 COG1587 HemD Uroporphyrinogen- 47.4 1.8E+02 0.0039 24.8 9.3 120 81-209 86-212 (248)
296 cd08248 RTN4I1 Human Reticulon 47.3 1.3E+02 0.0028 26.5 8.6 48 68-119 163-210 (350)
297 PRK11749 dihydropyrimidine deh 47.3 1E+02 0.0022 29.0 8.1 52 68-120 273-330 (457)
298 PRK14031 glutamate dehydrogena 47.3 86 0.0019 29.6 7.5 52 49-100 208-259 (444)
299 TIGR03206 benzo_BadH 2-hydroxy 47.3 1.6E+02 0.0034 24.4 8.7 55 69-123 4-59 (250)
300 cd01011 nicotinamidase Nicotin 47.2 1.2E+02 0.0025 24.9 7.6 60 56-119 130-196 (196)
301 TIGR03877 thermo_KaiC_1 KaiC d 47.0 78 0.0017 26.8 6.8 55 63-117 16-74 (237)
302 PRK05867 short chain dehydroge 46.7 1.7E+02 0.0037 24.5 8.9 54 69-122 10-64 (253)
303 cd05278 FDH_like Formaldehyde 46.7 1.6E+02 0.0034 26.0 9.0 54 62-118 162-215 (347)
304 PRK11891 aspartate carbamoyltr 46.6 1.2E+02 0.0027 28.5 8.3 51 72-122 244-300 (429)
305 cd05283 CAD1 Cinnamyl alcohol 46.5 1.6E+02 0.0035 26.0 9.0 52 65-120 167-218 (337)
306 PRK06124 gluconate 5-dehydroge 46.5 1.6E+02 0.0036 24.5 8.8 54 69-122 12-66 (256)
307 PF13580 SIS_2: SIS domain; PD 46.4 45 0.00098 25.7 4.8 35 65-99 101-137 (138)
308 PRK08192 aspartate carbamoyltr 46.3 1.2E+02 0.0026 27.5 8.1 54 68-122 159-218 (338)
309 cd08251 polyketide_synthase po 46.2 1.8E+02 0.004 24.6 10.7 55 61-118 114-168 (303)
310 cd05188 MDR Medium chain reduc 46.0 1.7E+02 0.0037 24.2 9.9 52 63-118 130-181 (271)
311 PF02310 B12-binding: B12 bind 45.9 1.1E+02 0.0024 22.3 6.8 92 82-183 18-113 (121)
312 PRK09257 aromatic amino acid a 45.8 2.4E+02 0.0051 25.7 11.8 81 40-122 65-148 (396)
313 COG2247 LytB Putative cell wal 45.8 1.7E+02 0.0037 26.4 8.6 71 72-142 55-127 (337)
314 PRK12429 3-hydroxybutyrate deh 45.8 1.8E+02 0.0038 24.2 9.1 55 69-123 5-60 (258)
315 COG2894 MinD Septum formation 45.7 1.7E+02 0.0038 25.1 8.2 119 83-213 22-149 (272)
316 PF13460 NAD_binding_10: NADH( 45.7 48 0.001 26.3 5.0 46 72-122 2-47 (183)
317 PRK06949 short chain dehydroge 45.7 1.5E+02 0.0032 24.8 8.3 33 69-101 10-42 (258)
318 PRK07366 succinyldiaminopimela 45.7 2.3E+02 0.005 25.6 12.9 108 43-154 67-178 (388)
319 cd05284 arabinose_DH_like D-ar 45.7 1.6E+02 0.0034 25.9 8.8 52 64-119 164-216 (340)
320 cd08261 Zn_ADH7 Alcohol dehydr 45.5 2.1E+02 0.0046 25.1 11.0 53 61-117 153-205 (337)
321 PRK04870 histidinol-phosphate 45.5 1.7E+02 0.0037 26.1 9.1 52 72-124 84-135 (356)
322 PRK13243 glyoxylate reductase; 45.4 2.3E+02 0.005 25.5 10.8 96 71-190 152-247 (333)
323 TIGR03801 asp_4_decarbox aspar 45.3 2.9E+02 0.0064 26.7 12.1 82 42-123 126-215 (521)
324 PRK06077 fabG 3-ketoacyl-(acyl 45.3 1.6E+02 0.0035 24.4 8.5 54 70-123 8-63 (252)
325 PRK12745 3-ketoacyl-(acyl-carr 45.3 1.8E+02 0.0039 24.2 9.0 54 70-123 4-59 (256)
326 PRK08068 transaminase; Reviewe 45.2 2.4E+02 0.0051 25.6 12.4 77 44-123 70-147 (389)
327 PRK08912 hypothetical protein; 45.2 2.4E+02 0.0051 25.5 14.0 78 43-123 62-140 (387)
328 PRK13984 putative oxidoreducta 45.2 94 0.002 30.4 7.8 50 71-120 285-352 (604)
329 cd08290 ETR 2-enoyl thioester 45.1 1.6E+02 0.0034 25.9 8.7 59 63-121 142-201 (341)
330 cd08253 zeta_crystallin Zeta-c 45.0 2E+02 0.0043 24.6 10.7 54 63-119 140-193 (325)
331 PRK06128 oxidoreductase; Provi 44.9 2.1E+02 0.0045 24.9 10.3 55 69-123 56-113 (300)
332 KOG1177 Long chain fatty acid 44.9 3E+02 0.0064 26.6 11.0 91 33-124 68-158 (596)
333 PRK09134 short chain dehydroge 44.8 1.9E+02 0.0041 24.3 9.9 54 69-122 10-65 (258)
334 PRK12744 short chain dehydroge 44.7 1.8E+02 0.004 24.3 8.8 54 70-123 10-68 (257)
335 PRK07035 short chain dehydroge 44.5 1.9E+02 0.004 24.1 9.1 53 70-122 10-63 (252)
336 cd08270 MDR4 Medium chain dehy 44.4 2E+02 0.0044 24.6 9.5 51 67-120 132-182 (305)
337 cd08249 enoyl_reductase_like e 44.4 1.5E+02 0.0033 26.2 8.6 50 66-119 153-202 (339)
338 PRK07814 short chain dehydroge 44.4 1.8E+02 0.004 24.5 8.8 54 69-122 11-65 (263)
339 cd05286 QOR2 Quinone oxidoredu 44.2 2E+02 0.0043 24.4 10.9 56 62-120 131-186 (320)
340 PRK05476 S-adenosyl-L-homocyst 44.1 1.5E+02 0.0033 27.8 8.6 49 66-118 210-258 (425)
341 PRK12814 putative NADPH-depend 44.0 1.6E+02 0.0035 29.2 9.3 55 65-120 320-380 (652)
342 PRK07677 short chain dehydroge 43.9 1.9E+02 0.0041 24.1 8.9 53 70-122 3-56 (252)
343 PRK07324 transaminase; Validat 43.5 2E+02 0.0042 26.1 9.2 51 72-123 83-133 (373)
344 KOG0022 Alcohol dehydrogenase, 43.5 2.6E+02 0.0055 25.4 11.6 115 62-213 187-301 (375)
345 PRK03562 glutathione-regulated 43.4 85 0.0018 31.0 7.2 50 71-123 402-451 (621)
346 cd08234 threonine_DH_like L-th 43.2 2.3E+02 0.0049 24.7 9.9 54 61-117 153-206 (334)
347 PRK05479 ketol-acid reductoiso 43.2 2.5E+02 0.0055 25.4 11.8 45 72-118 20-64 (330)
348 PRK12778 putative bifunctional 42.9 1E+02 0.0023 31.1 7.9 52 68-120 570-627 (752)
349 cd08272 MDR6 Medium chain dehy 42.9 2.2E+02 0.0047 24.4 9.3 56 61-120 138-193 (326)
350 PRK11609 nicotinamidase/pyrazi 42.8 1.9E+02 0.0042 23.8 8.9 53 69-121 143-204 (212)
351 PLN02342 ornithine carbamoyltr 42.7 1.4E+02 0.003 27.2 7.9 59 62-122 189-251 (348)
352 TIGR03537 DapC succinyldiamino 42.5 2.5E+02 0.0054 25.0 12.9 79 42-123 34-116 (350)
353 PRK15407 lipopolysaccharide bi 42.5 2.3E+02 0.0051 26.5 9.7 53 71-123 80-140 (438)
354 PRK05166 histidinol-phosphate 42.4 1.7E+02 0.0038 26.3 8.7 52 72-124 91-142 (371)
355 PRK09545 znuA high-affinity zi 42.4 1.8E+02 0.0039 25.9 8.6 85 83-171 212-306 (311)
356 TIGR02415 23BDH acetoin reduct 42.4 2E+02 0.0043 23.9 9.0 53 71-123 3-56 (254)
357 PRK00779 ornithine carbamoyltr 42.3 1.6E+02 0.0034 26.3 8.1 46 77-122 161-209 (304)
358 PRK08085 gluconate 5-dehydroge 42.3 2E+02 0.0044 24.0 9.0 54 69-122 10-64 (254)
359 PRK03659 glutathione-regulated 42.3 93 0.002 30.6 7.2 50 71-123 402-451 (601)
360 TIGR01317 GOGAT_sm_gam glutama 42.2 56 0.0012 31.1 5.6 50 71-120 145-212 (485)
361 cd06324 PBP1_ABC_sugar_binding 42.1 2.3E+02 0.005 24.5 18.0 45 163-210 192-240 (305)
362 PRK07806 short chain dehydroge 42.0 2E+02 0.0043 23.8 9.7 55 69-123 7-63 (248)
363 PRK09414 glutamate dehydrogena 41.9 1.2E+02 0.0027 28.6 7.6 53 48-100 211-263 (445)
364 PRK07791 short chain dehydroge 41.9 2.3E+02 0.005 24.5 9.4 72 69-140 7-89 (286)
365 cd08254 hydroxyacyl_CoA_DH 6-h 41.7 2.4E+02 0.0051 24.6 10.6 56 62-121 160-215 (338)
366 PRK13982 bifunctional SbtC-lik 41.7 37 0.00079 32.4 4.2 42 76-123 280-321 (475)
367 cd00288 Pyruvate_Kinase Pyruva 41.6 2.9E+02 0.0062 26.4 10.1 85 46-140 358-449 (480)
368 PRK02102 ornithine carbamoyltr 41.6 1.7E+02 0.0036 26.5 8.2 51 72-122 158-216 (331)
369 PRK06947 glucose-1-dehydrogena 41.5 1.7E+02 0.0038 24.2 8.1 54 70-123 4-59 (248)
370 TIGR00658 orni_carb_tr ornithi 41.5 1.8E+02 0.004 25.8 8.4 45 78-122 158-208 (304)
371 PRK13581 D-3-phosphoglycerate 41.4 3.4E+02 0.0073 26.2 11.1 103 71-197 142-246 (526)
372 PF01494 FAD_binding_3: FAD bi 41.2 44 0.00096 29.3 4.5 31 71-101 3-33 (356)
373 KOG2862 Alanine-glyoxylate ami 41.1 2.3E+02 0.005 25.7 8.6 82 64-147 88-177 (385)
374 PLN03049 pyridoxine (pyridoxam 41.1 2.4E+02 0.0051 26.8 9.5 49 70-118 61-116 (462)
375 PF00670 AdoHcyase_NAD: S-aden 41.0 1.8E+02 0.0038 23.5 7.4 95 63-185 18-112 (162)
376 PRK12770 putative glutamate sy 41.0 1.3E+02 0.0028 27.0 7.6 51 71-121 174-230 (352)
377 PRK08264 short chain dehydroge 40.8 1.5E+02 0.0033 24.4 7.6 33 69-101 7-40 (238)
378 PRK09754 phenylpropionate diox 40.6 67 0.0014 29.4 5.7 50 71-120 146-205 (396)
379 cd08260 Zn_ADH6 Alcohol dehydr 40.5 2.6E+02 0.0056 24.6 10.6 52 62-117 160-211 (345)
380 PRK09853 putative selenate red 40.4 1.2E+02 0.0025 32.0 7.8 51 70-120 540-608 (1019)
381 PF13478 XdhC_C: XdhC Rossmann 40.4 43 0.00094 26.0 3.8 30 72-101 1-30 (136)
382 KOG4175 Tryptophan synthase al 40.3 2.3E+02 0.0049 23.9 11.0 59 50-112 110-168 (268)
383 CHL00194 ycf39 Ycf39; Provisio 40.2 1.3E+02 0.0027 26.5 7.3 31 71-101 3-33 (317)
384 PF13450 NAD_binding_8: NAD(P) 40.2 47 0.001 22.2 3.5 27 76-102 3-29 (68)
385 PRK06847 hypothetical protein; 40.1 43 0.00094 30.1 4.4 30 71-100 6-35 (375)
386 COG0169 AroE Shikimate 5-dehyd 40.1 1.1E+02 0.0023 27.1 6.5 71 29-101 86-158 (283)
387 PF12831 FAD_oxidored: FAD dep 40.1 42 0.00092 31.3 4.4 31 72-102 2-32 (428)
388 PRK12749 quinate/shikimate deh 40.0 1.9E+02 0.0042 25.4 8.3 31 71-101 126-156 (288)
389 PRK08936 glucose-1-dehydrogena 39.9 2.3E+02 0.0049 23.8 9.8 54 69-122 8-63 (261)
390 PF13433 Peripla_BP_5: Peripla 39.9 1.1E+02 0.0025 28.0 6.9 86 108-199 126-213 (363)
391 COG1922 WecG Teichoic acid bio 39.9 1.9E+02 0.0042 25.1 7.9 118 80-207 71-193 (253)
392 PLN02623 pyruvate kinase 39.8 3.8E+02 0.0082 26.4 10.9 123 82-212 366-510 (581)
393 PRK01438 murD UDP-N-acetylmura 39.7 1.7E+02 0.0036 27.6 8.4 49 72-120 19-69 (480)
394 PRK08213 gluconate 5-dehydroge 39.7 2.3E+02 0.0049 23.8 8.9 55 69-123 13-68 (259)
395 TIGR01292 TRX_reduct thioredox 39.6 1.5E+02 0.0032 25.3 7.6 49 71-119 143-195 (300)
396 PRK06113 7-alpha-hydroxysteroi 39.5 2.3E+02 0.0049 23.7 8.8 54 69-122 12-66 (255)
397 PRK09291 short chain dehydroge 39.4 1.3E+02 0.0028 25.1 7.0 32 70-101 4-35 (257)
398 cd08286 FDH_like_ADH2 formalde 39.4 2E+02 0.0044 25.3 8.6 53 62-118 161-214 (345)
399 PRK04148 hypothetical protein; 39.4 1.6E+02 0.0035 22.8 6.8 48 71-122 19-66 (134)
400 TIGR03590 PseG pseudaminic aci 39.4 2.6E+02 0.0056 24.3 10.2 81 34-123 2-88 (279)
401 COG2085 Predicted dinucleotide 39.3 2.3E+02 0.0051 23.8 10.3 30 72-101 4-33 (211)
402 cd08238 sorbose_phosphate_red 39.1 1.3E+02 0.0029 27.6 7.5 58 63-122 171-238 (410)
403 COG0075 Serine-pyruvate aminot 38.9 63 0.0014 29.9 5.1 34 67-101 79-112 (383)
404 cd08265 Zn_ADH3 Alcohol dehydr 38.8 1.5E+02 0.0033 26.8 7.8 55 63-120 199-253 (384)
405 PRK09126 hypothetical protein; 38.8 42 0.00091 30.5 4.1 29 72-100 6-34 (392)
406 PF00391 PEP-utilizers: PEP-ut 38.7 41 0.00089 23.3 3.1 31 70-101 32-62 (80)
407 PRK04284 ornithine carbamoyltr 38.7 1.9E+02 0.0041 26.1 8.1 51 72-122 158-216 (332)
408 PRK06079 enoyl-(acyl carrier p 38.6 2.2E+02 0.0048 23.9 8.3 32 69-100 8-41 (252)
409 PF06745 KaiC: KaiC; InterPro 38.6 63 0.0014 26.9 4.8 55 63-117 14-73 (226)
410 TIGR01327 PGDH D-3-phosphoglyc 38.4 3.3E+02 0.0072 26.2 10.2 104 71-197 140-245 (525)
411 cd05289 MDR_like_2 alcohol deh 38.4 2.4E+02 0.0053 23.8 9.2 51 63-117 140-190 (309)
412 PF02887 PK_C: Pyruvate kinase 38.4 1.6E+02 0.0035 21.7 7.4 65 72-141 21-87 (117)
413 PRK02255 putrescine carbamoylt 38.3 2E+02 0.0043 26.1 8.2 51 72-122 157-214 (338)
414 PRK09275 aspartate aminotransf 38.3 3.8E+02 0.0082 26.0 12.0 115 40-154 130-254 (527)
415 cd08283 FDH_like_1 Glutathione 38.2 2.4E+02 0.0053 25.5 9.0 56 61-119 178-234 (386)
416 PRK06753 hypothetical protein; 38.1 50 0.0011 29.7 4.4 29 72-100 3-31 (373)
417 PRK05973 replicative DNA helic 38.1 1.4E+02 0.0031 25.5 6.9 54 63-116 59-116 (237)
418 PRK14805 ornithine carbamoyltr 38.0 1.3E+02 0.0029 26.7 6.9 45 78-122 157-207 (302)
419 PF00890 FAD_binding_2: FAD bi 37.8 46 0.001 30.5 4.2 30 72-101 2-31 (417)
420 PRK07392 threonine-phosphate d 37.7 2.8E+02 0.0061 24.8 9.3 50 72-123 77-126 (360)
421 COG0836 {ManC} Mannose-1-phosp 37.7 1E+02 0.0022 27.8 6.0 55 71-141 80-138 (333)
422 PRK12480 D-lactate dehydrogena 37.6 2.4E+02 0.0052 25.4 8.6 100 71-196 148-249 (330)
423 PF03853 YjeF_N: YjeF-related 37.6 2.1E+02 0.0046 22.8 9.9 31 69-99 26-59 (169)
424 PRK07985 oxidoreductase; Provi 37.4 2.8E+02 0.006 24.1 9.1 54 69-122 50-106 (294)
425 PLN02477 glutamate dehydrogena 37.3 2.7E+02 0.0059 26.0 9.1 51 49-100 186-237 (410)
426 cd08279 Zn_ADH_class_III Class 37.3 3E+02 0.0066 24.5 11.0 53 62-117 177-229 (363)
427 PRK12414 putative aminotransfe 37.2 3.2E+02 0.0069 24.7 12.5 50 72-123 93-143 (384)
428 PF06068 TIP49: TIP49 C-termin 37.2 1.7E+02 0.0036 27.2 7.4 56 44-101 27-86 (398)
429 PF04122 CW_binding_2: Putativ 37.1 1.5E+02 0.0032 20.8 10.0 54 71-125 27-83 (92)
430 PLN02494 adenosylhomocysteinas 37.1 1.5E+02 0.0033 28.3 7.4 96 63-186 249-344 (477)
431 PRK12814 putative NADPH-depend 36.9 1.7E+02 0.0037 29.0 8.2 51 71-121 195-263 (652)
432 PRK06701 short chain dehydroge 36.8 2.8E+02 0.0061 24.0 10.2 55 69-123 47-103 (290)
433 PRK08017 oxidoreductase; Provi 36.7 2.5E+02 0.0054 23.3 9.6 51 70-123 4-54 (256)
434 PRK01713 ornithine carbamoyltr 36.6 1.3E+02 0.0029 27.1 6.8 51 72-122 159-217 (334)
435 PF02254 TrkA_N: TrkA-N domain 36.6 1.6E+02 0.0035 21.2 7.2 48 72-122 1-48 (116)
436 PRK15454 ethanol dehydrogenase 36.6 1.7E+02 0.0037 27.0 7.7 22 164-188 98-119 (395)
437 PRK08636 aspartate aminotransf 36.5 3.3E+02 0.0073 24.8 12.1 77 43-122 70-147 (403)
438 TIGR03325 BphB_TodD cis-2,3-di 36.5 2.6E+02 0.0056 23.5 9.5 51 69-122 6-57 (262)
439 cd08235 iditol_2_DH_like L-idi 36.3 3E+02 0.0064 24.1 11.3 54 62-118 160-213 (343)
440 PRK12562 ornithine carbamoyltr 36.0 2E+02 0.0043 26.0 7.8 51 72-122 159-217 (334)
441 cd08550 GlyDH-like Glycerol_de 35.8 1.7E+02 0.0038 26.3 7.5 33 174-209 77-109 (349)
442 cd08263 Zn_ADH10 Alcohol dehyd 35.8 3E+02 0.0066 24.5 9.2 51 64-117 184-234 (367)
443 PRK08849 2-octaprenyl-3-methyl 35.6 53 0.0012 29.9 4.2 29 72-100 6-34 (384)
444 TIGR03540 DapC_direct LL-diami 35.6 3.3E+02 0.0072 24.5 12.6 51 72-123 94-144 (383)
445 PRK09072 short chain dehydroge 35.6 2.7E+02 0.0058 23.4 8.6 33 69-101 6-38 (263)
446 PRK15469 ghrA bifunctional gly 35.6 3.1E+02 0.0067 24.5 8.9 103 71-197 138-242 (312)
447 TIGR01963 PHB_DH 3-hydroxybuty 35.4 2.6E+02 0.0056 23.1 8.7 53 70-122 3-56 (255)
448 PF03807 F420_oxidored: NADP o 35.3 1.5E+02 0.0034 20.6 7.3 47 72-120 2-52 (96)
449 PLN02928 oxidoreductase family 35.2 3.4E+02 0.0073 24.6 9.3 115 70-196 160-277 (347)
450 PRK10624 L-1,2-propanediol oxi 35.2 2E+02 0.0043 26.3 7.9 18 174-193 87-104 (382)
451 PRK06202 hypothetical protein; 35.2 45 0.00097 28.0 3.4 37 176-212 63-99 (232)
452 PRK07231 fabG 3-ketoacyl-(acyl 35.1 2.6E+02 0.0056 23.1 9.5 33 69-101 6-38 (251)
453 PF03446 NAD_binding_2: NAD bi 35.1 1.6E+02 0.0034 23.2 6.4 44 72-118 4-47 (163)
454 PRK02731 histidinol-phosphate 35.0 2.4E+02 0.0052 25.2 8.4 51 72-123 87-137 (367)
455 cd06450 DOPA_deC_like DOPA dec 34.8 2.6E+02 0.0057 24.5 8.5 52 72-123 60-124 (345)
456 PRK08335 translation initiatio 34.6 1.8E+02 0.0038 25.7 7.0 58 65-123 107-168 (275)
457 PRK06500 short chain dehydroge 34.6 2.6E+02 0.0057 23.0 9.6 51 69-122 7-58 (249)
458 PRK06425 histidinol-phosphate 34.6 3.3E+02 0.0071 24.1 9.4 49 72-123 60-108 (332)
459 cd08241 QOR1 Quinone oxidoredu 34.5 2.9E+02 0.0063 23.5 10.7 55 62-119 134-188 (323)
460 cd00616 AHBA_syn 3-amino-5-hyd 34.4 1.8E+02 0.004 25.6 7.5 52 72-123 36-87 (352)
461 PRK07538 hypothetical protein; 34.4 58 0.0013 30.0 4.3 29 72-100 3-31 (413)
462 PRK12779 putative bifunctional 34.3 1.7E+02 0.0037 30.6 7.9 50 71-120 449-503 (944)
463 PF00702 Hydrolase: haloacid d 34.3 1.5E+02 0.0033 23.8 6.5 66 51-123 131-203 (215)
464 COG2230 Cfa Cyclopropane fatty 34.2 2.6E+02 0.0057 24.7 8.0 57 59-117 64-121 (283)
465 PF02887 PK_C: Pyruvate kinase 34.2 96 0.0021 23.0 4.8 84 163-267 7-90 (117)
466 PTZ00345 glycerol-3-phosphate 34.1 1.4E+02 0.003 27.4 6.5 34 69-102 11-51 (365)
467 PRK07200 aspartate/ornithine c 34.1 1.5E+02 0.0032 27.6 6.8 45 78-122 204-254 (395)
468 PRK06290 aspartate aminotransf 33.9 3.8E+02 0.0083 24.7 11.1 51 72-123 109-159 (410)
469 PRK04965 NADH:flavorubredoxin 33.8 1.5E+02 0.0032 26.9 6.9 50 71-120 143-202 (377)
470 PRK05868 hypothetical protein; 33.8 64 0.0014 29.3 4.4 29 72-100 4-32 (372)
471 TIGR01831 fabG_rel 3-oxoacyl-( 33.8 2.7E+02 0.0058 22.9 9.1 52 72-123 2-55 (239)
472 TIGR00511 ribulose_e2b2 ribose 33.8 2.3E+02 0.0051 25.1 7.8 57 65-122 113-173 (301)
473 PRK05650 short chain dehydroge 33.7 2.8E+02 0.0061 23.4 8.3 53 71-123 3-56 (270)
474 PRK06436 glycerate dehydrogena 33.7 3.4E+02 0.0074 24.1 10.1 94 70-190 123-216 (303)
475 COG0062 Uncharacterized conser 33.6 2.5E+02 0.0053 23.5 7.4 34 70-103 51-87 (203)
476 PRK12747 short chain dehydroge 33.5 2.8E+02 0.006 23.1 8.1 54 69-122 5-60 (252)
477 PRK05854 short chain dehydroge 33.4 3.3E+02 0.0072 23.9 9.1 72 69-140 15-90 (313)
478 PF11814 DUF3335: Peptidase_C3 33.4 1.2E+02 0.0026 25.5 5.4 31 72-102 45-77 (207)
479 PRK06505 enoyl-(acyl carrier p 33.3 3.1E+02 0.0067 23.4 9.5 32 69-100 8-41 (271)
480 cd01078 NAD_bind_H4MPT_DH NADP 33.3 2.6E+02 0.0056 22.6 8.2 32 68-99 28-59 (194)
481 PRK03515 ornithine carbamoyltr 33.3 1.6E+02 0.0034 26.7 6.7 51 72-122 159-217 (336)
482 TIGR00511 ribulose_e2b2 ribose 33.2 1.7E+02 0.0037 26.0 6.9 48 50-101 126-175 (301)
483 PRK06138 short chain dehydroge 33.2 2.8E+02 0.006 22.9 9.2 53 69-122 6-59 (252)
484 PLN03026 histidinol-phosphate 33.1 3E+02 0.0064 25.0 8.7 52 72-124 106-157 (380)
485 PRK07060 short chain dehydroge 33.0 2.5E+02 0.0055 23.1 7.7 52 69-123 10-62 (245)
486 PRK14804 ornithine carbamoyltr 33.0 2.2E+02 0.0048 25.4 7.6 29 76-104 161-189 (311)
487 PRK06101 short chain dehydroge 32.9 2.8E+02 0.0062 22.9 8.7 46 71-119 4-49 (240)
488 TIGR03552 F420_cofC 2-phospho- 32.9 2.6E+02 0.0056 22.4 11.4 70 111-186 61-130 (195)
489 COG1062 AdhC Zn-dependent alco 32.8 3.9E+02 0.0085 24.5 9.5 60 59-121 177-236 (366)
490 PRK07904 short chain dehydroge 32.8 3E+02 0.0065 23.2 9.4 53 69-121 9-65 (253)
491 PRK08265 short chain dehydroge 32.8 3E+02 0.0065 23.2 9.7 52 69-122 7-58 (261)
492 smart00822 PKS_KR This enzymat 32.7 2.2E+02 0.0048 21.5 8.1 52 72-123 4-60 (180)
493 PRK13111 trpA tryptophan synth 32.5 3.2E+02 0.007 23.7 8.3 72 48-123 72-151 (258)
494 PF04989 CmcI: Cephalosporin h 32.4 1.2E+02 0.0025 25.5 5.3 46 163-210 23-69 (206)
495 TIGR01830 3oxo_ACP_reduc 3-oxo 32.3 2.8E+02 0.006 22.6 8.6 52 72-123 2-55 (239)
496 PRK08163 salicylate hydroxylas 32.3 67 0.0015 29.1 4.3 30 71-100 6-35 (396)
497 COG0300 DltE Short-chain dehyd 32.3 3.5E+02 0.0075 23.7 8.7 69 69-140 7-81 (265)
498 COG2205 KdpD Osmosensitive K+ 32.2 5.8E+02 0.013 26.3 12.4 97 82-183 266-375 (890)
499 PRK07494 2-octaprenyl-6-methox 32.1 59 0.0013 29.4 3.9 30 72-101 10-39 (388)
500 PTZ00433 tyrosine aminotransfe 32.1 3.4E+02 0.0073 24.9 9.0 51 72-123 107-157 (412)
No 1
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-64 Score=437.59 Aligned_cols=263 Identities=55% Similarity=0.916 Sum_probs=249.6
Q ss_pred HHHhhccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHH
Q 024040 9 KDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIA 88 (273)
Q Consensus 9 ~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a 88 (273)
+.+.+.+++|||++++++....+++||+|+|++||+||.|||.|.+|+.+|+++|.+.||.+ ||++||||+|+++|+.|
T Consensus 3 ~~~~~~iG~TPlvrL~~~~~~~~~~i~~KlE~~NP~gSvKDR~A~~mI~~Ae~~G~l~pG~t-IVE~TSGNTGI~LA~va 81 (300)
T COG0031 3 ESILDLIGNTPLVRLNRLSPGTGVEIYAKLESFNPGGSVKDRIALYMIEDAEKRGLLKPGGT-IVEATSGNTGIALAMVA 81 (300)
T ss_pred cchHHHhCCCCcEeecccCCCCCceEEEEhhhcCCCCchhHHHHHHHHHHHHHcCCCCCCCE-EEEcCCChHHHHHHHHH
Confidence 46788899999999999998878999999999999999999999999999999999999986 99999999999999999
Q ss_pred HHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCC-hhHHHHHHHHHHHhCCC-eEeeCCCCCCcchHhhhhchHHH
Q 024040 89 ASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVG-FEGFVKKGEEILNRTPN-GYILGQFENPANPEIHYETTGPE 166 (273)
Q Consensus 89 ~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~-~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~g~~t~~~E 166 (273)
+.+|+++++|||++.+++|+++|++|||+|+.++...+ +..+.+++++++++.++ .+|.+||+||.|+++||.|++.|
T Consensus 82 a~~Gy~~iivmP~~~S~er~~~l~a~GAevi~t~~~~g~~~~a~~~a~el~~~~p~~~~~~~Qf~NpaN~~aH~~tT~~E 161 (300)
T COG0031 82 AAKGYRLIIVMPETMSQERRKLLRALGAEVILTPGAPGNMKGAIERAKELAAEIPGYAVWLNQFENPANPEAHYETTGPE 161 (300)
T ss_pred HHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEcCCCCCchHHHHHHHHHHHHhCCCceEchhhcCCCccHHHHHhhhHHH
Confidence 99999999999999999999999999999999998444 78899999999998877 77788999999999999999999
Q ss_pred HHHhhCCCcCEEEEecCCCccHHHHHHHHHhhCCCcEEEEEecCCCccccCCCCCCccccccCCCCCcccccccCCCeEE
Q 024040 167 IWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVI 246 (273)
Q Consensus 167 i~~q~~~~~d~iv~p~G~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~~~~~~~~~~glg~~~~~~~~~~~~~d~~v 246 (273)
|++|+++.+|+||+++|||||++|++++||+.+|++|+++|||++|+.+..+. +++.++|||.+++|.+++.+.+|+++
T Consensus 162 I~~~~~g~~d~fVagvGTGGTitGvar~Lk~~~p~i~iv~vdP~~S~~~~~G~-g~~~i~GIG~~~ip~~~~~~~iD~v~ 240 (300)
T COG0031 162 IWQQTDGKVDAFVAGVGTGGTITGVARYLKERNPNVRIVAVDPEGSVLLSGGE-GPHKIEGIGAGFVPENLDLDLIDEVI 240 (300)
T ss_pred HHHHhCCCCCEEEEeCCcchhHHHHHHHHHhhCCCcEEEEECCCCCcccCCCC-CCcccCCCCCCcCCcccccccCceEE
Confidence 99999888999999999999999999999999999999999999998887666 88999999999999888899999999
Q ss_pred EeCHHHHHHHHHHHHHHcCceecccCC
Q 024040 247 TVSSEEAIETSKLLALKEGLLRQLLYE 273 (273)
Q Consensus 247 ~v~d~e~~~a~~~l~~~eGi~~~ps~~ 273 (273)
.|+|+++++++|+|+++||+++|+||.
T Consensus 241 ~V~d~~A~~~~r~La~~eGilvG~SsG 267 (300)
T COG0031 241 RVSDEEAIATARRLAREEGLLVGISSG 267 (300)
T ss_pred EECHHHHHHHHHHHHHHhCeeecccHH
Confidence 999999999999999999999999973
No 2
>PLN03013 cysteine synthase
Probab=100.00 E-value=6.5e-64 Score=456.23 Aligned_cols=267 Identities=67% Similarity=1.122 Sum_probs=250.6
Q ss_pred hhhHHHhhccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHH
Q 024040 6 EIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLA 85 (273)
Q Consensus 6 ~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A 85 (273)
.+++++.+.+++|||++++.+++..+++||+|+|++|||||||||+|.+++.+++++|.+.||.++||++|+||||+|+|
T Consensus 112 ~~~~~i~~~iG~TPLv~l~~l~~~~g~~Iy~KlE~lNPtGSfKdR~A~~~l~~a~~~G~l~pG~~~VVeaSSGN~G~ALA 191 (429)
T PLN03013 112 NIADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFISPGKSVLVEPTSGNTGIGLA 191 (429)
T ss_pred HHHHHHHhcCCCCCeEECcccccccCCeEEEEeccCCCccccHHHHHHHHHHHHHHcCCcCCCCcEEEEECCcHHHHHHH
Confidence 46788999999999999999988778899999999999999999999999999999999999866699999999999999
Q ss_pred HHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhchHH
Q 024040 86 FIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGP 165 (273)
Q Consensus 86 ~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~ 165 (273)
++|+.+|++++||||+++++.|+++|+.|||+|+.+++..+++++++.+++++++.++++|++||+||.|+.+||+|+|+
T Consensus 192 ~~a~~~G~~~~VvvP~~~s~~K~~~ira~GAeVi~v~~~~~~~~a~~~A~ela~~~~g~~~~~qy~Np~n~~ah~~ttg~ 271 (429)
T PLN03013 192 FIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDPAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGP 271 (429)
T ss_pred HHHHHcCCCEEEEECCCCcHHHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHhhcCCeEeCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987655678889999998886678999999999999779999999
Q ss_pred HHHHhhCCCcCEEEEecCCCccHHHHHHHHHhhCCCcEEEEEecCCCccccCCCCCCccccccCCCCCcccccccCCCeE
Q 024040 166 EIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEV 245 (273)
Q Consensus 166 Ei~~q~~~~~d~iv~p~G~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~~~~~~~~~~glg~~~~~~~~~~~~~d~~ 245 (273)
||++|++++||+||+|+|+||+++|+++++|+.+|++|||+|||++++.+..+++.++.++|++.+.+|++++.+++|++
T Consensus 272 EI~eq~~~~~D~vV~~vGtGGtisGiar~lKe~~P~vkVigVep~gs~~l~~g~~~~~~i~Glg~~~ip~~~~~~~vD~v 351 (429)
T PLN03013 272 EIWDDTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPGPHKIQGIGAGFIPKNLDQKIMDEV 351 (429)
T ss_pred HHHHhcCCCCCEEEEeCCccHHHHHHHHHHHhhCCCCEEEEEEeCCCchhhCCCCCCcccCcccCCcCCHhHHHHhccEE
Confidence 99999977899999999999999999999999999999999999999888777777788899999888888888899999
Q ss_pred EEeCHHHHHHHHHHHHHHcCceecccC
Q 024040 246 ITVSSEEAIETSKLLALKEGLLRQLLY 272 (273)
Q Consensus 246 v~v~d~e~~~a~~~l~~~eGi~~~ps~ 272 (273)
+.|+|+|+++++++|++++|+++||||
T Consensus 352 v~VsD~ea~~a~r~La~~eGi~vG~SS 378 (429)
T PLN03013 352 IAISSEEAIETAKQLALKEGLMVGISS 378 (429)
T ss_pred EEECHHHHHHHHHHHHHHcCCEEecCH
Confidence 999999999999999999999999997
No 3
>PLN02565 cysteine synthase
Probab=100.00 E-value=2.4e-63 Score=443.61 Aligned_cols=267 Identities=75% Similarity=1.198 Sum_probs=246.2
Q ss_pred hhhHHHhhccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHH
Q 024040 6 EIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLA 85 (273)
Q Consensus 6 ~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A 85 (273)
...+.++..+++|||++++.++...+.+||+|+|++|||||||||+|.+++..+.+.|.+.||.+.||++|+||||+|+|
T Consensus 4 ~~~~~~~~~ig~TPLv~l~~l~~~~~~~i~~K~E~~nPtGSfKdR~A~~~l~~~~~~g~~~~g~~~vv~aSsGN~g~alA 83 (322)
T PLN02565 4 SIAKDVTELIGKTPLVYLNNVVDGCVARIAAKLEMMEPCSSVKDRIGYSMITDAEEKGLIKPGESVLIEPTSGNTGIGLA 83 (322)
T ss_pred hhhhhHHHHhCCCceEEccccCCCCCceEEEEecccCCccchHHHHHHHHHHHHHHcCCCCCCCcEEEEECCChHHHHHH
Confidence 34567899999999999998876666899999999999999999999999999999998888866799999999999999
Q ss_pred HHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhchHH
Q 024040 86 FIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGP 165 (273)
Q Consensus 86 ~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~ 165 (273)
++|+++|++|+||||+++++.|+++|+.|||+|+.+++..+++++.+.+++++++.++++|++||+|+.|+..||+|+|+
T Consensus 84 ~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~q~~n~~n~~~~~~t~a~ 163 (322)
T PLN02565 84 FMAAAKGYKLIITMPASMSLERRIILLAFGAELVLTDPAKGMKGAVQKAEEILAKTPNSYILQQFENPANPKIHYETTGP 163 (322)
T ss_pred HHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCCcHHHHHHHHHHHHhCCCcEeecccCCHhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987545678889999998876578999999999998789999999
Q ss_pred HHHHhhCCCcCEEEEecCCCccHHHHHHHHHhhCCCcEEEEEecCCCccccCCCCCCccccccCCCCCcccccccCCCeE
Q 024040 166 EIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEV 245 (273)
Q Consensus 166 Ei~~q~~~~~d~iv~p~G~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~~~~~~~~~~glg~~~~~~~~~~~~~d~~ 245 (273)
||++|+++.||+||+|+|+||+++|++++||+.+|++|||+|||++++++..+++.++.+++++.+..|..+..+.+|++
T Consensus 164 Ei~~q~~~~~d~vv~~vG~GG~l~Gi~~~lk~~~p~~kvi~Vep~~s~~~~~g~~~~~~~~glg~~~~~~~~~~~~vd~~ 243 (322)
T PLN02565 164 EIWKGTGGKVDAFVSGIGTGGTITGAGKYLKEQNPDIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVDLLDEV 243 (322)
T ss_pred HHHHhcCCCCCEEEEcCCchHHHHHHHHHHHHhCCCCEEEEEecCCCccccCCCCCCccCCCCCCCCCCCcCCHhHCCEE
Confidence 99999976799999999999999999999999999999999999999988777777778899998776777777889999
Q ss_pred EEeCHHHHHHHHHHHHHHcCceecccC
Q 024040 246 ITVSSEEAIETSKLLALKEGLLRQLLY 272 (273)
Q Consensus 246 v~v~d~e~~~a~~~l~~~eGi~~~ps~ 272 (273)
+.|+|+|+++++++|++++|+++||||
T Consensus 244 v~V~d~ea~~a~~~l~~~~gi~vg~ss 270 (322)
T PLN02565 244 VQVSSDEAIETAKLLALKEGLLVGISS 270 (322)
T ss_pred EEECHHHHHHHHHHHHHHhCcEEeccH
Confidence 999999999999999999999999997
No 4
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=100.00 E-value=9.2e-62 Score=439.53 Aligned_cols=266 Identities=59% Similarity=0.989 Sum_probs=245.5
Q ss_pred hhHHHhhccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHH
Q 024040 7 IKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAF 86 (273)
Q Consensus 7 ~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~ 86 (273)
+.+++.+.+++|||+++++++...|++||+|+|++|||||||||++.+++.+++++|.+.||.++||++|+||||+|+|+
T Consensus 49 ~~~~v~~~ig~TPl~~l~~l~~~~g~~I~~KlE~~nPtGS~KdR~A~~~l~~a~~~G~i~pG~~~vV~aSsGN~G~alA~ 128 (368)
T PLN02556 49 IKTDASQLIGKTPLVYLNKVTEGCGAYIAAKQEMFQPTSSIKDRPALAMIEDAEKKNLITPGKTTLIEPTSGNMGISLAF 128 (368)
T ss_pred hhhhHHHhcCCCccEEccccccccCCEEEEEecccCCccchHHHHHHHHHHHHHHcCCcCCCCCEEEEeCCchHHHHHHH
Confidence 55789999999999999999887889999999999999999999999999999999999999777999999999999999
Q ss_pred HHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhchHHH
Q 024040 87 IAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPE 166 (273)
Q Consensus 87 ~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~E 166 (273)
+|+++|++|+||||+.++..|+++|+.|||+|+.++...++...++.+++++++.++++|++||+||.++..||.++++|
T Consensus 129 ~a~~~G~~~~ivvp~~~~~~k~~~lr~~GA~Vi~~~~~~~~~~~~~~a~~l~~~~~~~~~~~q~~np~~~~~g~~ttg~E 208 (368)
T PLN02556 129 MAAMKGYKMILTMPSYTSLERRVTMRAFGAELVLTDPTKGMGGTVKKAYELLESTPDAFMLQQFSNPANTQVHFETTGPE 208 (368)
T ss_pred HHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCCCCccHHHHHHHHHHHhcCCCCccCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999864444577888888888777889999999999987799999999
Q ss_pred HHHhhCCCcCEEEEecCCCccHHHHHHHHHhhCCCcEEEEEecCCCccccCCCCCCccccccCCCCCcccccccCCCeEE
Q 024040 167 IWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVI 246 (273)
Q Consensus 167 i~~q~~~~~d~iv~p~G~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~~~~~~~~~~glg~~~~~~~~~~~~~d~~v 246 (273)
|++|+.+.+|+||+|+|||||++|+++++|+.+|++|||+|||++++.+..+.+.++.+.+++.+..|..++.+++|+++
T Consensus 209 I~eq~~~~~D~vV~~vGtGGt~aGv~~~lk~~~p~~kVigVep~~~~~~~~g~~~~~~i~g~g~~~~p~~~~~~~~d~~v 288 (368)
T PLN02556 209 IWEDTLGQVDIFVMGIGSGGTVSGVGKYLKSKNPNVKIYGVEPAESNVLNGGKPGPHHITGNGVGFKPDILDMDVMEKVL 288 (368)
T ss_pred HHHhcCCCCCEEEEcCCcchHHHHHHHHHHHhCCCCEEEEEeeCCCccccCCCCCCeeeeeccCCCCccccchhhCCeEE
Confidence 99998668999999999999999999999999999999999999998887777666677888887767777788999999
Q ss_pred EeCHHHHHHHHHHHHHHcCceecccC
Q 024040 247 TVSSEEAIETSKLLALKEGLLRQLLY 272 (273)
Q Consensus 247 ~v~d~e~~~a~~~l~~~eGi~~~ps~ 272 (273)
.|+|+|+++++++|+++||+++||||
T Consensus 289 ~Vsd~ea~~a~r~l~~~eGi~vg~ss 314 (368)
T PLN02556 289 EVSSEDAVNMARELALKEGLMVGISS 314 (368)
T ss_pred EECHHHHHHHHHHHHHHcCCEEecCH
Confidence 99999999999999999999999987
No 5
>PLN00011 cysteine synthase
Probab=100.00 E-value=2.7e-61 Score=431.49 Aligned_cols=272 Identities=74% Similarity=1.172 Sum_probs=247.7
Q ss_pred CcchhhhhHHHhhccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChH
Q 024040 1 MEDKCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNT 80 (273)
Q Consensus 1 ~~~~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~ 80 (273)
|.+-+..++.+...+++|||++++++++..|.+||+|+|++|||||||+|++.+++.+++++|.+.|+.++||++|+|||
T Consensus 1 ~~~~~~~~~~~~~~~g~TPl~~l~~l~~~~g~~i~~K~E~~nPtGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~ 80 (323)
T PLN00011 1 MEDRCLIKNDVTELIGNTPMVYLNNIVDGCVARIAAKLEMMEPCSSVKDRIAYSMIKDAEDKGLITPGKSTLIEATAGNT 80 (323)
T ss_pred CcchhhHHhhHHHHhCCCceEEccccCCCCCceEEEEecccCCccccchHHHHHHHHHHHHcCCCCCCCcEEEEeCCChH
Confidence 45556677788999999999999998876678999999999999999999999999999999999998556999999999
Q ss_pred HHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhh
Q 024040 81 GIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHY 160 (273)
Q Consensus 81 g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~ 160 (273)
|+|+|++|+.+|++|+||||+.+++.|+++|+.+||+|+.++.....++.++.+++++++.++++|++||+|+.++..||
T Consensus 81 g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~n~~n~~~~~ 160 (323)
T PLN00011 81 GIGLACIGAARGYKVILVMPSTMSLERRIILRALGAEVHLTDQSIGLKGMLEKAEEILSKTPGGYIPQQFENPANPEIHY 160 (323)
T ss_pred HHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCcChHHHHHHHHHHHHhCCCeEEeccccCCccHHHHH
Confidence 99999999999999999999999999999999999999999865444566788888888765789999999999887799
Q ss_pred hchHHHHHHhhCCCcCEEEEecCCCccHHHHHHHHHhhCCCcEEEEEecCCCccccCCCCCCccccccCCCCCccccccc
Q 024040 161 ETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVA 240 (273)
Q Consensus 161 ~t~~~Ei~~q~~~~~d~iv~p~G~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~~~~~~~~~~glg~~~~~~~~~~~ 240 (273)
.++++||++|+.++||+||+|+|+||+++|+++++|+.+|++|||||||++++++..+++..+.+++++.+..|..+...
T Consensus 161 ~t~~~EI~~q~~~~~D~iv~~vGtGGt~aGi~~~lk~~~~~~kvigVe~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~ 240 (323)
T PLN00011 161 RTTGPEIWRDSAGKVDILVAGVGTGGTATGVGKFLKEKNKDIKVCVVEPVESAVLSGGQPGPHLIQGIGSGIIPFNLDLT 240 (323)
T ss_pred HHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhhCCCCEEEEEecCCCcccCCCCCCCCCCCCCCCCCCCcccChh
Confidence 99999999999668999999999999999999999999999999999999998887777777788899887667777778
Q ss_pred CCCeEEEeCHHHHHHHHHHHHHHcCceecccC
Q 024040 241 MLDEVITVSSEEAIETSKLLALKEGLLRQLLY 272 (273)
Q Consensus 241 ~~d~~v~v~d~e~~~a~~~l~~~eGi~~~ps~ 272 (273)
.+|+++.|+|+|+++++++|++++|+++||||
T Consensus 241 ~~d~~v~V~d~e~~~a~~~l~~~~Gi~~~~ss 272 (323)
T PLN00011 241 IVDEIIQVTGEEAIETAKLLALKEGLLVGISS 272 (323)
T ss_pred hCCeEEEECHHHHHHHHHHHHHhcCCeEcccH
Confidence 89999999999999999999999999999997
No 6
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=100.00 E-value=1.3e-60 Score=423.59 Aligned_cols=260 Identities=60% Similarity=0.982 Sum_probs=238.8
Q ss_pred hhccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHc
Q 024040 12 TELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASR 91 (273)
Q Consensus 12 ~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~ 91 (273)
...+++|||+++++|++..|.+||+|+|++|||||||+|++.+++..+.++|.+.++.+ |+++|+||||+|+|++|+++
T Consensus 2 ~~~vg~TPL~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~-vv~aSsGN~g~alA~~a~~~ 80 (299)
T TIGR01136 2 EELIGNTPLVRLNRLAPGCDARVLAKLEGRNPSGSVKDRIALSMIEDAEKRGLLKPGDT-IIEATSGNTGIALAMVAAAK 80 (299)
T ss_pred ccccCCCceEEccccCCCCCceEEEEEcccCCCCCccHHHHHHHHHHHHHcCCCCCCCE-EEEeCCChHHHHHHHHHHHc
Confidence 45789999999999998888999999999999999999999999999999998777765 99999999999999999999
Q ss_pred CCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhchHHHHHHhh
Q 024040 92 GYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDS 171 (273)
Q Consensus 92 g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~ 171 (273)
|++|+||||+++++.|+++|+.+||+|+.++++.+++++.+.+++++++.++++++++|+|+.++..||+++++||++|+
T Consensus 81 G~~~~i~vp~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ql 160 (299)
T TIGR01136 81 GYKLILTMPETMSLERRKLLRAYGAELILTPAEEGMKGAIDKAEELAAETNKYVMLDQFENPANPEAHYKTTGPEIWRDT 160 (299)
T ss_pred CCcEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHhhCCCeEecCCCCCchhHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999987655788999999998876567899999999986679999999999999
Q ss_pred CCCcCEEEEecCCCccHHHHHHHHHhhCCCcEEEEEecCCCccccCCCCCCccccccCCCCCcccccccCCCeEEEeCHH
Q 024040 172 GGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVITVSSE 251 (273)
Q Consensus 172 ~~~~d~iv~p~G~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~~~~~~~~~~glg~~~~~~~~~~~~~d~~v~v~d~ 251 (273)
+++||+||+|+|+||+++|++.+|++.++.+|||+|||++++++....+....+.+++.+..|+.+.++++|+++.|+|+
T Consensus 161 ~~~~d~iv~~vG~Gg~~~G~~~~~~~~~~~~~vi~Ve~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~d~~~~V~d~ 240 (299)
T TIGR01136 161 DGRIDHFVAGVGTGGTITGVGRYLKEQNPNIKIVAVEPAESPVLSGGEPGPHKIQGIGAGFIPKILDLSLIDEVITVSDE 240 (299)
T ss_pred CCCCCEEEEcCchhHHHHHHHHHHHHhCCCCEEEEEecCCCccccCCCCCCccCCCCCCCCCCccCChhhCCEEEEECHH
Confidence 76799999999999999999999999999999999999999888766555556677777767777778889999999999
Q ss_pred HHHHHHHHHHHHcCceecccC
Q 024040 252 EAIETSKLLALKEGLLRQLLY 272 (273)
Q Consensus 252 e~~~a~~~l~~~eGi~~~ps~ 272 (273)
|+++++++|++++|+++|||+
T Consensus 241 e~~~a~~~l~~~~gi~~e~ss 261 (299)
T TIGR01136 241 DAIETARRLAREEGILVGISS 261 (299)
T ss_pred HHHHHHHHHHHHhCceEcchH
Confidence 999999999999999999986
No 7
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-61 Score=425.68 Aligned_cols=262 Identities=23% Similarity=0.303 Sum_probs=238.7
Q ss_pred hhhhhHHHhhccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHH
Q 024040 4 KCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIG 83 (273)
Q Consensus 4 ~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a 83 (273)
+..++.++...+.+|||++++.|++.+|++||+|+|++||+||||.|||++.++.+.+++.. ..+||++|+||||++
T Consensus 12 i~~A~~ri~~~~~~TPL~~s~~Ls~~~g~~v~lK~E~lQ~~gSFK~RGA~n~i~~Ls~e~~~---~~gViaaSaGNHaQG 88 (347)
T COG1171 12 ILAAAARLKGVVNPTPLQRSPSLSERLGAEIYLKRENLQPVGSFKIRGAYNKLSSLSEEEER---AAGVIAASAGNHAQG 88 (347)
T ss_pred HHHHHHHHhCcccCCCcccchhhHHhhCceEEEeeccCcccccchhhhHHHHHHhcChhhhh---cCceEEecCCcHHHH
Confidence 35677899999999999999999999999999999999999999999999999997644222 234999999999999
Q ss_pred HHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhch
Q 024040 84 LAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETT 163 (273)
Q Consensus 84 ~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~ 163 (273)
+|++|+++|++++||||.++|..|++.++.|||+|++++. +|+++.+.++++++++ ++.|++|||+|+.+ +||+|+
T Consensus 89 vA~aa~~lGi~a~IvMP~~tp~~Kv~a~r~~GaeVil~g~--~~dda~~~a~~~a~~~-G~~~i~pfD~p~vi-AGQGTi 164 (347)
T COG1171 89 VAYAAKRLGIKATIVMPETTPKIKVDATRGYGAEVILHGD--NFDDAYAAAEELAEEE-GLTFVPPFDDPDVI-AGQGTI 164 (347)
T ss_pred HHHHHHHhCCCEEEEecCCCcHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHHc-CCEEeCCCCCccee-ecccHH
Confidence 9999999999999999999999999999999999999985 5999999999999998 89999999999998 799999
Q ss_pred HHHHHHhhCCCcCEEEEecCCCccHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC------CCccccccCCCC-
Q 024040 164 GPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQP------GKHLIQGIGAGV- 232 (273)
Q Consensus 164 ~~Ei~~q~~~~~d~iv~p~G~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~----~~~~------~~~~~~glg~~~- 232 (273)
+.||++|++..||+||||+|+||+++|++.++|...|++|||||||++++++. .|+. ..++++|+++..
T Consensus 165 ~lEileq~~~~~d~v~vpvGGGGLisGia~~~k~~~p~~~vIGVEp~~a~~~~~Sl~~G~~~~~~~~~~tiaDG~av~~~ 244 (347)
T COG1171 165 ALEILEQLPDLPDAVFVPVGGGGLISGIATALKALSPEIKVIGVEPEGAPSMYASLKAGKIVVVLPDVGTIADGLAVKRP 244 (347)
T ss_pred HHHHHHhccccCCEEEEecCccHHHHHHHHHHHHhCCCCeEEEEeeCCChHHHHHHHcCCceeecCCCCccccccccCCC
Confidence 99999999655799999999999999999999999999999999999999864 3422 356788888754
Q ss_pred --CcccccccCCCeEEEeCHHHHHHHHHHHHHHcCceecccC
Q 024040 233 --IPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLRQLLY 272 (273)
Q Consensus 233 --~~~~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~~ps~ 272 (273)
.++.++++++|+++.|+|+|+.++++++++++++++||+.
T Consensus 245 g~~tf~i~~~~vd~~v~V~e~ei~~am~~l~~~~~iI~EpaG 286 (347)
T COG1171 245 GDLTFEILRELVDDIVLVDEDEICAAMRDLFERTKIIAEPAG 286 (347)
T ss_pred CHHHHHHHHHcCCcEEEECHHHHHHHHHHHHhcCCeeccccH
Confidence 4677889999999999999999999999999999999985
No 8
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=100.00 E-value=4.9e-60 Score=419.73 Aligned_cols=259 Identities=61% Similarity=0.968 Sum_probs=235.4
Q ss_pred hhccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHc
Q 024040 12 TELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASR 91 (273)
Q Consensus 12 ~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~ 91 (273)
..++++|||+++++ ....|.+||+|+|++|||||||+|++.+++.++.++|.+.+|.+ |+++|+||||+|+|++|+++
T Consensus 2 ~~~~g~TPl~~~~~-~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~-vv~aSsGN~g~alA~~a~~~ 79 (298)
T TIGR01139 2 SELIGNTPLVRLNR-IEGCNANVFVKLEGRNPSGSVKDRIALNMIWDAEKRGLLKPGKT-IVEPTSGNTGIALAMVAAAR 79 (298)
T ss_pred ccccCCCceEEccc-cCCCCceEEEEEcccCCCCcchHHHHHHHHHHHHHcCCCCCCCE-EEEeCCChhHHHHHHHHHHc
Confidence 46789999999998 45667899999999999999999999999999999998777765 99999999999999999999
Q ss_pred CCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCC-eEeeCCCCCCcchHhhhhchHHHHHHh
Q 024040 92 GYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPN-GYILGQFENPANPEIHYETTGPEIWND 170 (273)
Q Consensus 92 g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~g~~t~~~Ei~~q 170 (273)
|++|+||||+++++.|+++|+.+||+|+.++++.+++++.+.+++++++.++ +++++||+||.++..||.|+++||++|
T Consensus 80 Gl~~~i~vp~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q 159 (298)
T TIGR01139 80 GYKLILTMPETMSIERRKLLKAYGAELVLTPGAEGMKGAIAKAEEIAASTPNSYFMLQQFENPANPEIHRKTTGPEIWRD 159 (298)
T ss_pred CCeEEEEeCCccCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCcEEcccccCCcccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999754446788889998887643 558999999998778999999999999
Q ss_pred hCCCcCEEEEecCCCccHHHHHHHHHhhCCCcEEEEEecCCCccccCCCCCCccccccCCCCCcccccccCCCeEEEeCH
Q 024040 171 SGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVITVSS 250 (273)
Q Consensus 171 ~~~~~d~iv~p~G~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~~~~~~~~~~glg~~~~~~~~~~~~~d~~v~v~d 250 (273)
++..||+||+|+|+||+++|++.+|+++++++|||+|||.+++.+...++.++.+++++.+..+..+....+|+++.|+|
T Consensus 160 ~~~~~d~vv~~vG~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~~~V~d 239 (298)
T TIGR01139 160 TDGKLDAFVAGVGTGGTITGVGEVLKEQKPNIKIVAVEPAESPVLSGGKPGPHKIQGIGAGFIPKNLNRSVIDEVITVSD 239 (298)
T ss_pred hCCCCCEEEEecchhHhHHHHHHHHHhcCCCCEEEEEecCCCcccCCCCCCCCCCCCCCCCCCCCccChhhCCEEEEECH
Confidence 97679999999999999999999999999999999999999988776666667778888877777777788999999999
Q ss_pred HHHHHHHHHHHHHcCceecccC
Q 024040 251 EEAIETSKLLALKEGLLRQLLY 272 (273)
Q Consensus 251 ~e~~~a~~~l~~~eGi~~~ps~ 272 (273)
+|+++++++|+++||+++||||
T Consensus 240 ~e~~~a~~~l~~~~gi~~~pss 261 (298)
T TIGR01139 240 EEAIETARRLAAEEGILVGISS 261 (298)
T ss_pred HHHHHHHHHHHHhcCceEcccH
Confidence 9999999999999999999986
No 9
>PRK11761 cysM cysteine synthase B; Provisional
Probab=100.00 E-value=2.6e-60 Score=420.17 Aligned_cols=257 Identities=43% Similarity=0.691 Sum_probs=230.0
Q ss_pred hhHHHhhccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHH
Q 024040 7 IKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAF 86 (273)
Q Consensus 7 ~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~ 86 (273)
.++++...+++|||+++++|+...|.+||+|+|++|||||||+|++.+++.+++++|.+.|+.+ ||++|+||||+|+|+
T Consensus 2 ~~~~i~~~~g~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~-vv~aSsGN~g~alA~ 80 (296)
T PRK11761 2 AYPTLEDTIGNTPLVKLQRLPPDRGNTILAKLEGNNPAGSVKDRPALSMIVQAEKRGEIKPGDT-LIEATSGNTGIALAM 80 (296)
T ss_pred ccccHHHhcCCCceEeccccccCCCCEEEEEEcccCCCCCchhHHHHHHHHHHHHcCCCCCCCE-EEEeCCChHHHHHHH
Confidence 3568889999999999999988888999999999999999999999999999999998888755 999999999999999
Q ss_pred HHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhchHHH
Q 024040 87 IAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPE 166 (273)
Q Consensus 87 ~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~E 166 (273)
+|+.+|++|+||||+++++.|++.|+.|||+|+.++...+++++.+.+++++++. +++|++||+|+.++..||.|+++|
T Consensus 81 ~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~l~~~~-~~~~~~~~~n~~~~~~~~~t~~~E 159 (296)
T PRK11761 81 IAAIKGYRMKLIMPENMSQERRAAMRAYGAELILVPKEQGMEGARDLALQMQAEG-EGKVLDQFANPDNPLAHYETTGPE 159 (296)
T ss_pred HHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHhcc-CCEecCCCCChhhHHHHhhchHHH
Confidence 9999999999999999999999999999999999996556888888899988876 789999999999987789999999
Q ss_pred HHHhhCCCcCEEEEecCCCccHHHHHHHHHhhCCCcEEEEEecCCCccccCCCCCCccccccCCCCCcccccccCCCeEE
Q 024040 167 IWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVI 246 (273)
Q Consensus 167 i~~q~~~~~d~iv~p~G~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~~~~~~~~~~glg~~~~~~~~~~~~~d~~v 246 (273)
|++|+++.+|+||+|+|+||+++|++++||+.+|++|||+|||++++.+.+ +.+......+..++...+|+++
T Consensus 160 i~eq~~~~~d~iv~~vG~Gg~~~Gi~~~lk~~~~~~kvigVep~~~~~i~g-------~~~~~~~~~~~~~~~~~vd~~v 232 (296)
T PRK11761 160 IWRQTEGRITHFVSSMGTTGTIMGVSRYLKEQNPAVQIVGLQPEEGSSIPG-------IRRWPEEYLPKIFDASRVDRVL 232 (296)
T ss_pred HHHhcCCCCCEEEecCCcHHHHHHHHHHHHHhCCCCEEEEEecCCCCcCcC-------CCCCCCCcCCcccChhhCCEEE
Confidence 999997679999999999999999999999999999999999998876532 1111122233444567899999
Q ss_pred EeCHHHHHHHHHHHHHHcCceecccC
Q 024040 247 TVSSEEAIETSKLLALKEGLLRQLLY 272 (273)
Q Consensus 247 ~v~d~e~~~a~~~l~~~eGi~~~ps~ 272 (273)
.|+|+|+++++++|++++|+++||||
T Consensus 233 ~V~d~e~~~a~~~l~~~~gi~ve~ss 258 (296)
T PRK11761 233 DVSQQEAENTMRRLAREEGIFCGVSS 258 (296)
T ss_pred EECHHHHHHHHHHHHHHhCceEchhH
Confidence 99999999999999999999999997
No 10
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=100.00 E-value=3.9e-59 Score=411.76 Aligned_cols=253 Identities=41% Similarity=0.719 Sum_probs=227.1
Q ss_pred HhhccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHH
Q 024040 11 VTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAAS 90 (273)
Q Consensus 11 i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~ 90 (273)
+...+++|||+++++++...|.+||+|+|++|||||||+|++.+++.++.++|.+.|+.+ ||++|+||||+|+|++|++
T Consensus 2 i~~~ig~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~~g~~-vv~aSsGN~g~alA~~a~~ 80 (290)
T TIGR01138 2 IEQTVGNTPLVRLQRMGPENGSEVWLKLEGNNPAGSVKDRPALSMIVEAEKRGEIKPGDV-LIEATSGNTGIALAMIAAL 80 (290)
T ss_pred hHHhCCCCceEEccccccCCCCeEEEEEccCCCCccHHHHHHHHHHHHHHHcCCCCCCCE-EEEECCChHHHHHHHHHHH
Confidence 466799999999999998888999999999999999999999999999999998888765 9999999999999999999
Q ss_pred cCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhchHHHHHHh
Q 024040 91 RGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWND 170 (273)
Q Consensus 91 ~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q 170 (273)
+|++|+||||+++++.|++.|+.+||+|+.+++..+++++.+.+++++++. +.+|++||+|+.++..||.|+++||++|
T Consensus 81 ~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~v~~~~~~~~~~~~a~~l~~~~-~~~~~~~~~~~~~~~~~~~t~~~Ei~~q 159 (290)
T TIGR01138 81 KGYRMKLLMPDNMSQERKAAMRAYGAELILVTKEEGMEGARDLALELANRG-EGKLLDQFNNPDNPYAHYTSTGPEIWQQ 159 (290)
T ss_pred cCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhC-CCCCCCccCCcccHHHHhHhHHHHHHHH
Confidence 999999999999999999999999999999987556788889999998886 4468999999999876799999999999
Q ss_pred hCCCcCEEEEecCCCccHHHHHHHHHhhCCCcEEEEEecCCCccccCCCCCCccccccCCCCCcccccccCCCeEEEeCH
Q 024040 171 SGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVITVSS 250 (273)
Q Consensus 171 ~~~~~d~iv~p~G~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~~~~~~~~~~glg~~~~~~~~~~~~~d~~v~v~d 250 (273)
+++++|+||+|+|+||+++|++.+||+.+|++|||+|||.+++.+.+ ..+++.+..|..+....+|+++.|+|
T Consensus 160 ~~~~~d~iv~~vG~Gg~~~Gv~~~lk~~~~~~kvi~Vep~~~~~~~g-------~~~~~~~~~~~~~~~~~~d~~v~V~d 232 (290)
T TIGR01138 160 TGGRITHFVSSMGTTGTIMGVSRFLKEQNPPVQIVGLQPEEGSSIPG-------IRRWPTEYLPGIFDASLVDRVLDIHQ 232 (290)
T ss_pred cCCCCCEEEECCCchHHHHHHHHHHHHhCCCCEEEEEeCCCCCCccC-------CCCCCCCcCCcccChhhCcEEEEECH
Confidence 97679999999999999999999999999999999999999876532 12233333344455677999999999
Q ss_pred HHHHHHHHHHHHHcCceecccC
Q 024040 251 EEAIETSKLLALKEGLLRQLLY 272 (273)
Q Consensus 251 ~e~~~a~~~l~~~eGi~~~ps~ 272 (273)
+|+++++++|++++|+++||||
T Consensus 233 ~e~~~a~~~l~~~~gi~~g~ss 254 (290)
T TIGR01138 233 RDAENTMRELAVREGIFCGVSS 254 (290)
T ss_pred HHHHHHHHHHHHHhCceEcHhH
Confidence 9999999999999999999997
No 11
>PRK10717 cysteine synthase A; Provisional
Probab=100.00 E-value=9.9e-59 Score=416.68 Aligned_cols=265 Identities=45% Similarity=0.721 Sum_probs=232.4
Q ss_pred hhHHHhhccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHH
Q 024040 7 IKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAF 86 (273)
Q Consensus 7 ~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~ 86 (273)
+++++.+.+++|||++++++++.+|++||+|+|++|||||||+|++.+++.++++.|.+.++.+ ||++|+||||+|+|+
T Consensus 3 ~~~~~~~~~g~TPL~~~~~l~~~~g~~i~~K~E~~nptGS~K~Rga~~~v~~a~~~g~~~~g~~-vv~aSsGN~g~alA~ 81 (330)
T PRK10717 3 IFEDVSDTIGNTPLIRLNRASEATGCEILGKAEFLNPGGSVKDRAALNIIWDAEKRGLLKPGGT-IVEGTAGNTGIGLAL 81 (330)
T ss_pred hhhhHHHHhCCCceEEccccCCCCCCeEEEEeeccCCCCCchHHHHHHHHHHHHHcCCCCCCCE-EEEeCCcHHHHHHHH
Confidence 4678999999999999999999889999999999999999999999999999999998888755 999999999999999
Q ss_pred HHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCC------ChhHHHHHHHHHHHhC-CCeEeeCCCCCCcchHhh
Q 024040 87 IAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAV------GFEGFVKKGEEILNRT-PNGYILGQFENPANPEIH 159 (273)
Q Consensus 87 ~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~------~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~g 159 (273)
+|+++|++|+||||+.+++.|+++|+.+||+|+.+++.. ..+.+.+.++++.++. .+++|++||+||.++..|
T Consensus 82 ~a~~~G~~~~vv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g 161 (330)
T PRK10717 82 VAAARGYKTVIVMPETQSQEKKDLLRALGAELVLVPAAPYANPNNYVKGAGRLAEELVASEPNGAIWANQFDNPANREAH 161 (330)
T ss_pred HHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCcccccccchHHHHHHHHHHHHhhCCCCeEecCCCCChhhHHHH
Confidence 999999999999999999999999999999999998631 1223344455554443 278999999999987779
Q ss_pred hhchHHHHHHhhCCCcCEEEEecCCCccHHHHHHHHHhhCCCcEEEEEecCCCcccc---CCC---CCCccccccCCCCC
Q 024040 160 YETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN---GGQ---PGKHLIQGIGAGVI 233 (273)
Q Consensus 160 ~~t~~~Ei~~q~~~~~d~iv~p~G~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~---~~~---~~~~~~~glg~~~~ 233 (273)
|.|+++||++|++.++|+||+|+|+||+++|++++||+..|++|||+|||++++.+. .++ ...+.+++++.+..
T Consensus 162 ~~t~a~Ei~~ql~~~~d~iv~~vG~GG~~~Gi~~~~k~~~~~~~vi~Vep~~~~~~~~~~~g~~~~~~~~~~~gl~~~~~ 241 (330)
T PRK10717 162 YETTGPEIWEQTDGKVDGFVCAVGTGGTLAGVSRYLKETNPKVKIVLADPTGSALYSYYKTGELKAEGSSITEGIGQGRI 241 (330)
T ss_pred HHhHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHhCCCCEEEEEcCCCCccccccccCCcCCCCCcccCcCCCCcC
Confidence 999999999999767999999999999999999999999999999999999985432 122 24467889988776
Q ss_pred cccccccCCCeEEEeCHHHHHHHHHHHHHHcCceecccC
Q 024040 234 PPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLRQLLY 272 (273)
Q Consensus 234 ~~~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~~ps~ 272 (273)
+..+....+|+++.|+|+|+++++++|++++|+++|||+
T Consensus 242 ~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~gi~vepss 280 (330)
T PRK10717 242 TANLEGAPIDDAIRIPDEEALSTAYRLLEEEGLCLGGSS 280 (330)
T ss_pred CcccChhhCCEEEEECHHHHHHHHHHHHHhcCCeEeecH
Confidence 666666678999999999999999999999999999987
No 12
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=100.00 E-value=3.6e-58 Score=406.56 Aligned_cols=255 Identities=56% Similarity=0.910 Sum_probs=232.4
Q ss_pred CCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeE
Q 024040 16 GHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKL 95 (273)
Q Consensus 16 ~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~ 95 (273)
|+|||+++++|++..|++||+|+|++|||||||+|++.+++.++.++|..+++.+ |+++|+||||+|+|++|+++|++|
T Consensus 1 g~TPl~~~~~l~~~~g~~i~~K~E~~~ptgS~K~R~a~~~l~~a~~~g~~~~~~~-vv~~SsGN~g~alA~~a~~~G~~~ 79 (291)
T cd01561 1 GNTPLVRLNRLSPGTGAEIYAKLEFFNPGGSVKDRIALYMIEDAEKRGLLKPGTT-IIEPTSGNTGIGLAMVAAAKGYRF 79 (291)
T ss_pred CCCCEEEccccCCCCCCeEEEEecccCCCCcchHHHHHHHHHHHHHcCCCCCCCE-EEEeCCChHHHHHHHHHHHcCCeE
Confidence 6899999999998888999999999999999999999999999999998766654 999999999999999999999999
Q ss_pred EEEecCCCCHHHHHHHHHcCCEEEEeCCCC--ChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhh-hchHHHHHHhhC
Q 024040 96 IIIMPSTYSIERRIILRALGAEVYLADPAV--GFEGFVKKGEEILNRTPNGYILGQFENPANPEIHY-ETTGPEIWNDSG 172 (273)
Q Consensus 96 ~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~-~t~~~Ei~~q~~ 172 (273)
+||||+++++.|+++|+.+||+|+.++... +++++.+.+++++++.++++|++||+||.+++ |+ +|+++||++|++
T Consensus 80 ~i~vp~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~-g~~~t~~~Ei~~ql~ 158 (291)
T cd01561 80 IIVMPETMSEEKRKLLRALGAEVILTPEAEADGMKGAIAKARELAAETPNAFWLNQFENPANPE-AHYETTAPEIWEQLD 158 (291)
T ss_pred EEEECCCCCHHHHHHHHHcCCEEEEeCCCCcCCHHHHHHHHHHHHhhCCCcEEecCCCCchHHH-HHHHHHHHHHHHHcC
Confidence 999999999999999999999999998652 34788888999888765789999999999995 65 499999999997
Q ss_pred CCcCEEEEecCCCccHHHHHHHHHhhCCCcEEEEEecCCCccccCCCCCCccccccCCCCCcccccccCCCeEEEeCHHH
Q 024040 173 GKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVITVSSEE 252 (273)
Q Consensus 173 ~~~d~iv~p~G~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~~~~~~~~~~glg~~~~~~~~~~~~~d~~v~v~d~e 252 (273)
..||+||+|+|+||+++|++.+|+++.|.++||+|||++++++.......+.+++++.+..+..+...++|+++.|+|+|
T Consensus 159 ~~~d~vv~~~G~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~V~d~e 238 (291)
T cd01561 159 GKVDAFVAGVGTGGTITGVARYLKEKNPNVRIVGVDPVGSVLFSGGPPGPHKIEGIGAGFIPENLDRSLIDEVVRVSDEE 238 (291)
T ss_pred CCCCEEEEeCChHHHHHHHHHHHHHhCCCCEEEEEecCCCcccCCCCCCCCcCCCCCCCCCCCccCchhCceeEEECHHH
Confidence 68999999999999999999999999999999999999998875444566778899888667777777899999999999
Q ss_pred HHHHHHHHHHHcCceecccC
Q 024040 253 AIETSKLLALKEGLLRQLLY 272 (273)
Q Consensus 253 ~~~a~~~l~~~eGi~~~ps~ 272 (273)
+++++++|++++|+++|||+
T Consensus 239 ~~~a~~~l~~~~gi~~epss 258 (291)
T cd01561 239 AFAMARRLAREEGLLVGGSS 258 (291)
T ss_pred HHHHHHHHHHHhCeeEcccH
Confidence 99999999999999999996
No 13
>PLN02356 phosphateglycerate kinase
Probab=100.00 E-value=3.2e-58 Score=418.75 Aligned_cols=266 Identities=36% Similarity=0.609 Sum_probs=229.5
Q ss_pred hhhHHHhhccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHH
Q 024040 6 EIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLA 85 (273)
Q Consensus 6 ~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A 85 (273)
+....+...+++|||+++++|+...|.+||+|+|++|||||||||++.+++.+++++|.+.|+.. |+++||||||+|+|
T Consensus 42 ~~~~~~~~~ig~TPLv~~~~l~~~~g~~v~~KlE~~nPtGS~KdR~A~~~i~~a~~~g~~~~~g~-VveaSSGN~g~alA 120 (423)
T PLN02356 42 KPRNGLIDAIGNTPLIRINSLSEATGCEILGKCEFLNPGGSVKDRVAVKIIEEALESGQLFPGGV-VTEGSAGSTAISLA 120 (423)
T ss_pred chhhhHHhhcCCCceEECcccccccCCEEEEEeccCCCCCCHHHHHHHHHHHHHHhCCccCCCCE-EEEeCCHHHHHHHH
Confidence 34556888899999999999998888999999999999999999999999999999998777755 88899999999999
Q ss_pred HHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCC-----CCh-hHHH---HHHHHHHHh----------------
Q 024040 86 FIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPA-----VGF-EGFV---KKGEEILNR---------------- 140 (273)
Q Consensus 86 ~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~-----~~~-~~~~---~~a~~~~~~---------------- 140 (273)
++|+++|++|+||||+++++.|+++|+.|||+|+.+++. .++ ..+. ..+.+++++
T Consensus 121 ~~aa~~G~~~~ivvP~~~s~~K~~~ir~~GAeVi~v~~~~~~~~~~~~~~a~~~~~~a~e~a~~~~~~~~~~~~~~~~~~ 200 (423)
T PLN02356 121 TVAPAYGCKCHVVIPDDVAIEKSQILEALGATVERVRPVSITHKDHYVNIARRRALEANELASKRRKGSETDGIHLEKTN 200 (423)
T ss_pred HHHHHcCCcEEEEECCCCcHHHHHHHHHcCCEEEEECCccCCCcchhHHHHHHHHHHHHHHHHHhhhccccccccccccc
Confidence 999999999999999999999999999999999999641 122 1111 234444433
Q ss_pred ----------------CCCeEeeCCCCCCcchHhhhhchHHHHHHhhCCCcCEEEEecCCCccHHHHHHHHHhhCCCcEE
Q 024040 141 ----------------TPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKV 204 (273)
Q Consensus 141 ----------------~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~iv~p~G~Gg~~~Gi~~~~k~~~~~~~v 204 (273)
.++.+|++||+|+.++.+|+..+|+||++|+++++|+||+|+|+||+++|+++++|+.+|++||
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~q~~n~~n~~ahg~gTg~EI~eQl~g~~D~vVv~vGtGGti~Gva~~lK~~~P~vkV 280 (423)
T PLN02356 201 GCISEEEKENSLFSSSCTGGFFADQFENLANFRAHYEGTGPEIWEQTQGNLDAFVAAAGTGGTLAGVSRFLQEKNPNIKC 280 (423)
T ss_pred cccccccccccccccCCCCcEecCccCCcchHHHHHhhHHHHHHHhcCCCCCEEEeCCCchHHHHHHHHHHHHhCCCCEE
Confidence 1467899999999997777666799999999778999999999999999999999999999999
Q ss_pred EEEecCCCcccc-------------CCC----CCCccccccCCCCCcccccccCCCeEEEeCHHHHHHHHHHHHHHcCce
Q 024040 205 YGIEPSESAVLN-------------GGQ----PGKHLIQGIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLL 267 (273)
Q Consensus 205 igVe~~~~~~~~-------------~~~----~~~~~~~glg~~~~~~~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~ 267 (273)
++|||.+++.+. .++ +.++.++|++.+..|..+....+|+++.|+|+|+++++++|++++|++
T Consensus 281 igVep~~s~~~~~~~~~~~~~~s~~~G~~~~~~~~tia~Gig~~~~~~~~~~~~vD~~v~Vsd~ea~~a~r~L~~~~Gl~ 360 (423)
T PLN02356 281 FLIDPPGSGLFNKVTRGVMYTREEAEGRRLKNPFDTITEGIGINRLTQNFLMAKLDGAFRGTDKEAVEMSRYLLKNDGLF 360 (423)
T ss_pred EEEecCCCccccccccchhhhhhhhcCCccCCCCCeecCcCcCCCCChhHhHHhCCcEEEECHHHHHHHHHHHHHHCCee
Confidence 999999886332 122 135778999988778888888999999999999999999999999999
Q ss_pred ecccC
Q 024040 268 RQLLY 272 (273)
Q Consensus 268 ~~ps~ 272 (273)
+||||
T Consensus 361 vg~Ss 365 (423)
T PLN02356 361 VGSSS 365 (423)
T ss_pred EeECH
Confidence 99997
No 14
>PRK08526 threonine dehydratase; Provisional
Probab=100.00 E-value=1e-58 Score=424.61 Aligned_cols=260 Identities=22% Similarity=0.304 Sum_probs=232.4
Q ss_pred hhhhhHHHhhccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHH
Q 024040 4 KCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIG 83 (273)
Q Consensus 4 ~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a 83 (273)
+..++.++...+++|||+++++|++.+|++||+|+|++|||||||+|++.+.+.++.+.+. .++||++|+||||++
T Consensus 7 i~~a~~~i~~~i~~TPl~~~~~Ls~~~g~~iylK~E~lqptGSfK~RgA~n~i~~l~~~~~----~~gVV~aSaGNhg~a 82 (403)
T PRK08526 7 IYQAKQRISGFVNKTPFAYAPFLSKISGAEVYLKKENLQITGAYKIRGAYNKIANLSEEQK----QHGVIAASAGNHAQG 82 (403)
T ss_pred HHHHHHHHhCcCCCCCccchHHHHHHhCCeEEEEecCCCCCCCCHHHHHHHHHHhccHhhc----CCEEEEECccHHHHH
Confidence 4567889999999999999999999889999999999999999999999999998876543 235999999999999
Q ss_pred HHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhch
Q 024040 84 LAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETT 163 (273)
Q Consensus 84 ~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~ 163 (273)
+|++|+++|++|+||||++++..|++.++.|||+|+.+++ +++++++.+++++++. +++|++||+|+.++ +||+|+
T Consensus 83 vA~aa~~~Gi~~~IvmP~~~p~~k~~~~r~~GA~Vv~~g~--~~~~a~~~a~~~a~~~-g~~~v~p~~~~~~i-~G~gti 158 (403)
T PRK08526 83 VAISAKKFGIKAVIVMPEATPLLKVSGTKALGAEVILKGD--NYDEAYAFALEYAKEN-NLTFIHPFEDEEVM-AGQGTI 158 (403)
T ss_pred HHHHHHHcCCCEEEEEcCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEeeCCCCCHHHH-hhhHHH
Confidence 9999999999999999999999999999999999999984 5899999999998886 78999999999887 799999
Q ss_pred HHHHHHhhCCCcCEEEEecCCCccHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----CCccccccCCCCC-
Q 024040 164 GPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQP-----GKHLIQGIGAGVI- 233 (273)
Q Consensus 164 ~~Ei~~q~~~~~d~iv~p~G~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~----~~~~-----~~~~~~glg~~~~- 233 (273)
+.||++|++ ++|+||+|+|+||+++|++.++|+.+|++|||||||++++++. .+++ ..+.++|++.+..
T Consensus 159 a~EI~eq~~-~~D~vvvpvGgGGl~aGia~~~k~~~p~~kvigVep~~~~~~~~s~~~g~~~~~~~~~tiadgiav~~~~ 237 (403)
T PRK08526 159 ALEMLDEIS-DLDMVVVPVGGGGLISGIASAAKQINPNIKIIGVGAKGAPAMYESFHAKKIINSKSVRTIADGIAVRDAS 237 (403)
T ss_pred HHHHHHhcC-CCCEEEEecChHHHHHHHHHHHHHhCCCCEEEEEEECCCChHHHHHHcCCcccCCCCCceeccccCCCCC
Confidence 999999994 7999999999999999999999999999999999999998763 2332 3456777776422
Q ss_pred c--ccccccCCCeEEEeCHHHHHHHHHHHHHHcCceecccC
Q 024040 234 P--PVLDVAMLDEVITVSSEEAIETSKLLALKEGLLRQLLY 272 (273)
Q Consensus 234 ~--~~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~~ps~ 272 (273)
| +.+.++++|+++.|+|+|+.+|+++|++++|+++|||+
T Consensus 238 ~~~~~~~~~~vd~~v~V~d~ei~~A~~~l~~~~gi~ve~ag 278 (403)
T PRK08526 238 PINLAIILECVDDFVQVDDEEIANAILFLLEKQKIVVEGAG 278 (403)
T ss_pred HHHHHHHHHhCCEEEEECHHHHHHHHHHHHHhcCcEeeHHH
Confidence 2 23345789999999999999999999999999999986
No 15
>PLN02970 serine racemase
Probab=100.00 E-value=4.7e-58 Score=411.42 Aligned_cols=259 Identities=21% Similarity=0.243 Sum_probs=228.8
Q ss_pred hhhhHHHhhccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHH
Q 024040 5 CEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGL 84 (273)
Q Consensus 5 ~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~ 84 (273)
....+++...+++|||++++++++.+|.+||+|+|++|||||||||++.+++.++.+++. .++||++|+||||+|+
T Consensus 15 ~~a~~~i~~~i~~TPL~~~~~l~~~~g~~i~~K~E~~nptGSfKdRga~~~i~~~~~~~~----~~~vv~aSsGN~g~al 90 (328)
T PLN02970 15 REARKRIAPFIHRTPVLTSSSLDALAGRSLFFKCECFQKGGAFKFRGACNAIFSLSDDQA----EKGVVTHSSGNHAAAL 90 (328)
T ss_pred HHHHHHHhCcCCCCCeeechhhHHhhCCeEEEEecCCCCCCCcHHHHHHHHHHHhhHhhc----CCeEEEECCcHHHHHH
Confidence 456678899999999999999998888999999999999999999999999999875553 2459999999999999
Q ss_pred HHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhchH
Q 024040 85 AFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTG 164 (273)
Q Consensus 85 A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~ 164 (273)
|++|+++|++|+||||+++++.|++.|+.|||+|+.+++ +++++.+.+++++++. +++|++||+|+.++ .||+|++
T Consensus 91 A~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~Vi~~~~--~~~~~~~~a~~la~~~-g~~~~~~~~n~~~~-~g~~t~g 166 (328)
T PLN02970 91 ALAAKLRGIPAYIVVPKNAPACKVDAVIRYGGIITWCEP--TVESREAVAARVQQET-GAVLIHPYNDGRVI-SGQGTIA 166 (328)
T ss_pred HHHHHHcCCCEEEEECCCCCHHHHHHHHhcCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEEeCCCCCcchh-hehHHHH
Confidence 999999999999999999999999999999999999985 4788888899998874 88999999999988 5999999
Q ss_pred HHHHHhhCCCcCEEEEecCCCccHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----CCccccccCCCC--C
Q 024040 165 PEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQP-----GKHLIQGIGAGV--I 233 (273)
Q Consensus 165 ~Ei~~q~~~~~d~iv~p~G~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~----~~~~-----~~~~~~glg~~~--~ 233 (273)
+||++|++ .||+||+|+|+||+++|++++||+.+|++|||+|||++++++. .+++ .++++++++.+. .
T Consensus 167 ~Ei~~ql~-~~D~vv~~vG~GG~~~Gi~~~lk~~~~~~kvi~Vep~~~~~~~~s~~~g~~~~~~~~~tia~gl~~~~~~~ 245 (328)
T PLN02970 167 LEFLEQVP-ELDVIIVPISGGGLISGIALAAKAIKPSIKIIAAEPKGADDAAQSKAAGEIITLPVTNTIADGLRASLGDL 245 (328)
T ss_pred HHHHHhcc-CCCEEEEeeCchHHHHHHHHHHHhcCCCCEEEEEEECCCcHHHHHHHcCCceeCCCCCCccccccCCcCHH
Confidence 99999995 6999999999999999999999999999999999999998653 2322 244566666542 1
Q ss_pred cccccccCCCeEEEeCHHHHHHHHHHHHHHcCceecccC
Q 024040 234 PPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLRQLLY 272 (273)
Q Consensus 234 ~~~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~~ps~ 272 (273)
++...++.+|+++.|+|+|+++++++|++++|+++|||+
T Consensus 246 ~~~~~~~~~d~~v~V~d~e~~~a~~~la~~~gi~ve~s~ 284 (328)
T PLN02970 246 TWPVVRDLVDDVITVDDKEIIEAMKLCYERLKVVVEPSG 284 (328)
T ss_pred HHHHHHhhCCEEEEECHHHHHHHHHHHHHhcCcEEeHHH
Confidence 233456789999999999999999999999999999997
No 16
>PRK06382 threonine dehydratase; Provisional
Probab=100.00 E-value=4.8e-58 Score=422.09 Aligned_cols=260 Identities=24% Similarity=0.302 Sum_probs=233.0
Q ss_pred hhhhhHHHhhccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHH
Q 024040 4 KCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIG 83 (273)
Q Consensus 4 ~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a 83 (273)
+..++.++.+.+++|||+++++|++..|++||+|+|++|||||||+|++.+++..+.+.+. .++||++|+||||+|
T Consensus 12 i~~a~~~~~~~i~~TPl~~~~~ls~~~g~~v~~K~E~~nptGSfK~Rga~~~i~~~~~~~~----~~gvv~aSsGN~g~a 87 (406)
T PRK06382 12 ILYAKSYLEGYLNRTPLIHSTTFGDEYGGDIYFKLENFQKTGSFKSRGAVFKFSKLSEDEL----RNGVITASAGNHAQG 87 (406)
T ss_pred HHHHHHHHhCcCCCCCeeEhhhhHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHhcchhcc----CCeEEEECCCHHHHH
Confidence 3467789999999999999999998889999999999999999999999999998876553 234999999999999
Q ss_pred HHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhch
Q 024040 84 LAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETT 163 (273)
Q Consensus 84 ~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~ 163 (273)
+|++|+++|++|+||||++++..|++.++.|||+|+.+++ +++++.+.+++++++. +++|++||+|+.++ +||+|+
T Consensus 88 ~A~aa~~~G~~~~ivmp~~~~~~k~~~~~~~GA~Vv~~~~--~~~~a~~~a~~la~~~-~~~~v~~~~~~~~i-~g~~t~ 163 (406)
T PRK06382 88 VAYAASINGIDAKIVMPEYTIPQKVNAVEAYGAHVILTGR--DYDEAHRYADKIAMDE-NRTFIEAFNDRWVI-SGQGTI 163 (406)
T ss_pred HHHHHHHcCCCEEEEEcCCCHHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCEecCccCChHHH-HHHHHH
Confidence 9999999999999999999999999999999999999985 4889999999998886 78999999999988 599999
Q ss_pred HHHHHHhhCCCcCEEEEecCCCccHHHHHHHHHhhCCCcEEEEEecCCCccc----cCCCC-----CCccccccCCCC--
Q 024040 164 GPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVL----NGGQP-----GKHLIQGIGAGV-- 232 (273)
Q Consensus 164 ~~Ei~~q~~~~~d~iv~p~G~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~----~~~~~-----~~~~~~glg~~~-- 232 (273)
++||++|++ .||+||+|+|+||+++|+++++|+.+|++|||||||++++++ ..+++ .++.++|++.+.
T Consensus 164 ~~Ei~eq~~-~~d~vvvpvG~GG~~~Gv~~~~k~~~p~~~vigVe~~~~~~~~~~~~~~~~~~~~~~~t~a~gl~~~~~~ 242 (406)
T PRK06382 164 GLEIMEDLP-DLDQIIVPVGGGGLISGIALAAKHINPNVKIIGIESELSDSMKASLREGKIVAHTSGVSICDGISVKYPG 242 (406)
T ss_pred HHHHHHhcC-CCCEEEEeeChHHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHcCCceecCCCCCccccccCCCcc
Confidence 999999994 799999999999999999999999999999999999999875 23332 345678887764
Q ss_pred -CcccccccCCCeEEEeCHHHHHHHHHHHHHHcCceecccC
Q 024040 233 -IPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLRQLLY 272 (273)
Q Consensus 233 -~~~~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~~ps~ 272 (273)
.++.+.++++|+++.|+|+|+.+++++|++++|+++|||+
T Consensus 243 ~~~~~~~~~~~d~~v~V~d~ei~~a~~~l~~~~gi~~epsg 283 (406)
T PRK06382 243 DLTFDIAKNYVDDIVTVTEESVSKAIYKLFEREKIVAEPSG 283 (406)
T ss_pred HHHHHHHHHcCCEEEEECHHHHHHHHHHHHHHcCceechHH
Confidence 2334567899999999999999999999999999999985
No 17
>PRK07476 eutB threonine dehydratase; Provisional
Probab=100.00 E-value=9.3e-58 Score=408.84 Aligned_cols=260 Identities=22% Similarity=0.297 Sum_probs=230.6
Q ss_pred hhhhhHHHhhccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHH
Q 024040 4 KCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIG 83 (273)
Q Consensus 4 ~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a 83 (273)
+..++.++..++++|||+++++|++.+|.+||+|+|++|||||||+|++.+++.++.+++. .++||++|+||||+|
T Consensus 6 i~~a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~i~~a~~~~~----~~gvv~aSsGN~g~a 81 (322)
T PRK07476 6 IYRARRRIAGRVRRTPLVASASLSARAGVPVWLKLETLQPTGSFKLRGATNALLSLSAQER----ARGVVTASTGNHGRA 81 (322)
T ss_pred HHHHHHHHhCCCCCCCceechhhHHhhCCeEEEEEccCCCCCCchHHHHHHHHHhhhhhhh----CCeEEEECCChHHHH
Confidence 4578899999999999999999998888999999999999999999999999999998875 234999999999999
Q ss_pred HHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhch
Q 024040 84 LAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETT 163 (273)
Q Consensus 84 ~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~ 163 (273)
+|++|+++|++|+||||+++++.|+++|+.|||+|+.+++ +++++++.+.+++++. +++|++||+||.++ .||+|+
T Consensus 82 lA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-g~~~~~~~~n~~~~-~g~~t~ 157 (322)
T PRK07476 82 LAYAARALGIRATICMSRLVPANKVDAIRALGAEVRIVGR--SQDDAQAEVERLVREE-GLTMVPPFDDPRII-AGQGTI 157 (322)
T ss_pred HHHHHHHhCCCEEEEeCCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEeCCCCCccee-echhHH
Confidence 9999999999999999999999999999999999999985 4788889999998876 77999999999998 599999
Q ss_pred HHHHHHhhCCCcCEEEEecCCCccHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----CCccccccCCCC--
Q 024040 164 GPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQP-----GKHLIQGIGAGV-- 232 (273)
Q Consensus 164 ~~Ei~~q~~~~~d~iv~p~G~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~----~~~~-----~~~~~~glg~~~-- 232 (273)
++||++|++ ++|+||+|+|+||+++|++++||...|++|||+|||++++++. .+.+ ..+.+++++.+.
T Consensus 158 ~~Ei~~Q~~-~~d~iv~~vG~GG~~~Gv~~~~k~~~~~~~vigVe~~~~~~~~~s~~~g~~~~~~~~~t~a~~l~~~~~~ 236 (322)
T PRK07476 158 GLEILEALP-DVATVLVPLSGGGLASGVAAAVKAIRPAIRVIGVSMERGAAMHASLAAGRPVQVEEVPTLADSLGGGIGL 236 (322)
T ss_pred HHHHHHhCc-CCCEEEEEcChHHHHHHHHHHHHHhCCCCEEEEEEECCchHHHHHHHcCCceeCCCCCCccccccccccC
Confidence 999999995 7999999999999999999999999999999999999887543 2322 234455553322
Q ss_pred ---CcccccccCCCeEEEeCHHHHHHHHHHHHHHcCceecccC
Q 024040 233 ---IPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLRQLLY 272 (273)
Q Consensus 233 ---~~~~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~~ps~ 272 (273)
.+..+.+..+|+++.|+|+|+++++++|++++|+++||++
T Consensus 237 ~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~ve~a~ 279 (322)
T PRK07476 237 DNRYTFAMCRALLDDVVLLDEAEIAAGIRHAYREERLVVEGAG 279 (322)
T ss_pred CcHHHHHHHHhcCCeEEEECHHHHHHHHHHHHHhcCceEeChh
Confidence 2334556789999999999999999999999999999986
No 18
>PRK12483 threonine dehydratase; Reviewed
Probab=100.00 E-value=1.1e-57 Score=426.79 Aligned_cols=256 Identities=26% Similarity=0.326 Sum_probs=229.1
Q ss_pred HHHhhccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHH
Q 024040 9 KDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIA 88 (273)
Q Consensus 9 ~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a 88 (273)
.++...+++|||+++++|++.+|++||+|+|++|||||||+|+|.+++..+.++.. .++||++|+||||+++|++|
T Consensus 29 ~~i~~~v~~TPL~~~~~Ls~~~g~~IylK~E~lqptGSfK~RGA~n~i~~l~~~~~----~~GVV~aSaGNha~gvA~aA 104 (521)
T PRK12483 29 ARVYDVARETPLQRAPNLSARLGNQVLLKREDLQPVFSFKIRGAYNKMARLPAEQL----ARGVITASAGNHAQGVALAA 104 (521)
T ss_pred HHHhhhcCCCCeeEchhhhHhhCCEEEEEEcCCCCCCchHHHHHHHHHHHhHHHHh----cCcEEEECCCHHHHHHHHHH
Confidence 36778999999999999999999999999999999999999999999988764332 23499999999999999999
Q ss_pred HHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhchHHHHH
Q 024040 89 ASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIW 168 (273)
Q Consensus 89 ~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~ 168 (273)
+++|++|+||||++++..|++.++.|||+|+.+++ +++++.+.+++++++. +++|++||+||.++ +||+|+|.||+
T Consensus 105 ~~lGi~~~IvmP~~tp~~Kv~~~r~~GAeVil~g~--~~d~a~~~A~~la~e~-g~~~v~pfdd~~vi-aGqgTig~EI~ 180 (521)
T PRK12483 105 ARLGVKAVIVMPRTTPQLKVDGVRAHGGEVVLHGE--SFPDALAHALKLAEEE-GLTFVPPFDDPDVI-AGQGTVAMEIL 180 (521)
T ss_pred HHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhc-CCeeeCCCCChHHH-HHHHHHHHHHH
Confidence 99999999999999999999999999999999984 5899999999999886 78999999999998 69999999999
Q ss_pred HhhCCCcCEEEEecCCCccHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----CCccccccCCCC---Cccc
Q 024040 169 NDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQP-----GKHLIQGIGAGV---IPPV 236 (273)
Q Consensus 169 ~q~~~~~d~iv~p~G~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~----~~~~-----~~~~~~glg~~~---~~~~ 236 (273)
+|+++.||+||+|+|+||+++|++.++|..+|++|||||||++++++. .+++ ..+.++|+++.. .++.
T Consensus 181 eQ~~~~~D~VvvpvGgGGliaGia~~~K~~~p~vkVIGVep~~a~~~~~sl~~g~~~~~~~~~t~adGiav~~~g~~~~~ 260 (521)
T PRK12483 181 RQHPGPLDAIFVPVGGGGLIAGIAAYVKYVRPEIKVIGVEPDDSNCLQAALAAGERVVLGQVGLFADGVAVAQIGEHTFE 260 (521)
T ss_pred HHhCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEEeCCCchhhHHHhcCCcccCCCCCceeceeccCCCCHHHHH
Confidence 999657999999999999999999999999999999999999998764 2332 235667777543 2345
Q ss_pred ccccCCCeEEEeCHHHHHHHHHHHHHHcCceecccC
Q 024040 237 LDVAMLDEVITVSSEEAIETSKLLALKEGLLRQLLY 272 (273)
Q Consensus 237 ~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~~ps~ 272 (273)
+.++++|++|.|+|+|+.+|+++|++++|+++|||+
T Consensus 261 ~~~~~vd~vv~Vse~ei~~ai~~l~~~~~i~vEpag 296 (521)
T PRK12483 261 LCRHYVDEVVTVSTDELCAAIKDIYDDTRSITEPAG 296 (521)
T ss_pred HHHHhCCEEEEECHHHHHHHHHHHHHhCCcEEeHHH
Confidence 567899999999999999999999999999999986
No 19
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=100.00 E-value=3.6e-58 Score=395.92 Aligned_cols=268 Identities=65% Similarity=1.028 Sum_probs=254.2
Q ss_pred hhhHHHhhccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHH
Q 024040 6 EIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLA 85 (273)
Q Consensus 6 ~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A 85 (273)
.+.+.+.+.+|+|||++++++...+.++||+|+|.+||+||.|||.++.|+.+|+.+|.+.||.++++++||||+|+++|
T Consensus 41 ~~~~~~~~liG~TPlv~ln~i~~g~~~~i~~K~E~~~p~~SvKdRia~sMi~~Ae~~G~i~pg~stliEpTSGNtGigLA 120 (362)
T KOG1252|consen 41 LILWDVRDLIGNTPLVKLNKIAGGCVARIAAKLEYMNPGGSVKDRIAWSMIEDAEKKGLITPGKSTLIEPTSGNTGIGLA 120 (362)
T ss_pred hhhhhHHHHhCCCceEEeccccCCccceEEEEeeecCCcccHHHHHHHHHHHHHHHcCCccCCceEEEecCCCchHHHHH
Confidence 45567889999999999999977777999999999999999999999999999999999999988899999999999999
Q ss_pred HHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhH---HHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhc
Q 024040 86 FIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEG---FVKKGEEILNRTPNGYILGQFENPANPEIHYET 162 (273)
Q Consensus 86 ~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t 162 (273)
++|+..|++|+++||++.+.+|+..|++|||+|++++....++. +...+.++..+.++.+.++||.||.|+..||.+
T Consensus 121 ~~~a~~Gyk~i~tmP~~ms~Ek~~~l~a~Gaeii~tp~a~~~~~~e~ai~~a~~l~~~~pna~~l~Qf~np~Np~~hy~t 200 (362)
T KOG1252|consen 121 YMAALRGYKCIITMPEKMSKEKRILLRALGAEIILTPPAAGMKGPESAIGKAEELLNKTPNAYILDQFHNPGNPLAHYET 200 (362)
T ss_pred HHHHHcCceEEEEechhhhHHHHHHHHHcCCEEEecChHHccCChHHHHHHHHHHHHhCCChHHHHHhcCCCCccccccc
Confidence 99999999999999999999999999999999999997655655 889999999999999999999999999999999
Q ss_pred hHHHHHHhhCCCcCEEEEecCCCccHHHHHHHHHhhCCCcEEEEEecCCCccccCCCCCC--ccccccCCCCCccccccc
Q 024040 163 TGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGK--HLIQGIGAGVIPPVLDVA 240 (273)
Q Consensus 163 ~~~Ei~~q~~~~~d~iv~p~G~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~~~~~~--~~~~glg~~~~~~~~~~~ 240 (273)
+++||++|+.+++|.+|.++|+|||++|+++++|+.++++||++|+|.+|..+....+.+ +.++|||.++.|..++.+
T Consensus 201 tg~EI~~q~~g~vDi~V~gaGTGGTitgvGRylke~~~~~kVv~vdp~~S~~~~~~~~g~~~~~I~GIGyg~~p~~ld~~ 280 (362)
T KOG1252|consen 201 TGPEIWRQLDGKVDIFVAGAGTGGTITGVGRYLKEQNPNIKVVGVDPQESIVLSGGKPGPTFHKIQGIGYGFIPTTLDTK 280 (362)
T ss_pred ccHHHHHHhcCCCCEEEeccCCCceeechhHHHHHhCCCCEEEEeCCCcceeccCCCCCCCccceeccccCcCccccchH
Confidence 999999999999999999999999999999999999999999999999998887777766 789999999999999999
Q ss_pred CCCeEEEeCHHHHHHHHHHHHHHcCceecccCC
Q 024040 241 MLDEVITVSSEEAIETSKLLALKEGLLRQLLYE 273 (273)
Q Consensus 241 ~~d~~v~v~d~e~~~a~~~l~~~eGi~~~ps~~ 273 (273)
.+|+++.+.++|++.+.|+|+.+||+++|.||.
T Consensus 281 ~vd~~~~~~~d~A~~~Ar~La~eeGll~G~SSG 313 (362)
T KOG1252|consen 281 LVDEVLKVSSDEAIEMARRLALEEGLLVGISSG 313 (362)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhhCeeecccch
Confidence 999999999999999999999999999999984
No 20
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=100.00 E-value=2.6e-57 Score=404.69 Aligned_cols=261 Identities=22% Similarity=0.287 Sum_probs=229.8
Q ss_pred chhhhhHHHhhccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHH
Q 024040 3 DKCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGI 82 (273)
Q Consensus 3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~ 82 (273)
++..++.++.+.+++|||+++++|++.+|.+||+|+|++|||||||+|++.+++.++.+... ..+||++|+||||+
T Consensus 5 ~i~~a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~ 80 (317)
T TIGR02991 5 DIERAAARISGRVEETPLVESPSLSELCGVPVHLKLEHRQTTGSFKLRGATNAVLSLSDTQR----AAGVVAASTGNHGR 80 (317)
T ss_pred HHHHHHHHHhCcCCCCCceechhhHHhhCCeEEEEeccCCCCCCcHHHHHHHHHHhhhHhcc----CCeEEEECCCHHHH
Confidence 35678899999999999999999998888999999999999999999999999998764321 23499999999999
Q ss_pred HHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhc
Q 024040 83 GLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYET 162 (273)
Q Consensus 83 a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t 162 (273)
|+|++|+++|++|+||||+.+++.|+++|+.|||+|+.++. +++++.+.+++++++. +++|++||+||.++ +||+|
T Consensus 81 alA~~a~~~G~~~~v~~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-g~~~~~~~~n~~~~-~g~~t 156 (317)
T TIGR02991 81 ALAYAAAEEGVRATICMSELVPQNKVDEIRRLGAEVRIVGR--SQDDAQEEVERLVADR-GLTMLPPFDHPDIV-AGQGT 156 (317)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEeeCCCCChHHH-hhHHH
Confidence 99999999999999999999999999999999999999995 4788888999998876 78999999999988 69999
Q ss_pred hHHHHHHhhCCCcCEEEEecCCCccHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----CCccccccC--CC
Q 024040 163 TGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQP-----GKHLIQGIG--AG 231 (273)
Q Consensus 163 ~~~Ei~~q~~~~~d~iv~p~G~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~----~~~~-----~~~~~~glg--~~ 231 (273)
+++||++|++ ++|+||+|+|+||+++|++++||+++|++|||+|||++++++. .+++ .++.+++++ .+
T Consensus 157 ~a~Ei~~q~~-~~d~vvv~~G~Gg~~~Gi~~~~k~~~p~~~vigvep~~~~~~~~s~~~g~~~~~~~~~tia~~l~~g~~ 235 (317)
T TIGR02991 157 LGLEVVEQMP-DLATVLVPLSGGGLASGVAMAVKAARPDTRVIGVSMERGAAMKASLQAGRPVLVAELPTLADSLGGGIG 235 (317)
T ss_pred HHHHHHHhCC-CCCEEEEEcChhHHHHHHHHHHHHhCCCCEEEEEEECCchHHHHHHHcCCcccCCCCCChhhhhhhccC
Confidence 9999999994 6899999999999999999999999999999999999887664 2332 245566553 22
Q ss_pred ---CCcccccccCCCeEEEeCHHHHHHHHHHHHHHcCceecccC
Q 024040 232 ---VIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLRQLLY 272 (273)
Q Consensus 232 ---~~~~~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~~ps~ 272 (273)
..++++.++++|+++.|+|+|+++++++|++++|+++|||+
T Consensus 236 ~~~~~~~~~~~~~vd~~v~V~d~e~~~a~~~l~~~~g~~ve~s~ 279 (317)
T TIGR02991 236 LDNRVTFAMCKALLDEIVLVSEAEIAAGIRHAYAEEREIVEGAG 279 (317)
T ss_pred CCCHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhCCcEEcchH
Confidence 23455667889999999999999999999999999999986
No 21
>PRK08198 threonine dehydratase; Provisional
Probab=100.00 E-value=1.5e-57 Score=419.43 Aligned_cols=260 Identities=25% Similarity=0.372 Sum_probs=231.9
Q ss_pred hhhhhHHHhhccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHH
Q 024040 4 KCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIG 83 (273)
Q Consensus 4 ~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a 83 (273)
+..++.++...+++|||+++++|++.+|++||+|+|++|||||||+|++.+++.++.+++. .++||++|+||||++
T Consensus 9 i~~a~~~i~~~i~~TPl~~~~~ls~~~g~~i~~K~E~~nptGS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~a 84 (404)
T PRK08198 9 IEEARERLKGVVRRTPLEYSRTLSELTGAEVYLKCENLQRTGSFKIRGAYNKIASLSEEER----ARGVVAASAGNHAQG 84 (404)
T ss_pred HHHHHHHHhccCCCCCceehhhHHHHhCCEEEEEECCCCCCCCCHHHHHHHHHHhccHhhc----CCEEEEECCCHHHHH
Confidence 3467889999999999999999999889999999999999999999999999999885543 345999999999999
Q ss_pred HHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhch
Q 024040 84 LAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETT 163 (273)
Q Consensus 84 ~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~ 163 (273)
+|++|+++|++|+||||++++..|+++++.|||+|+.++. +++++++.+++++++. +++|++||+||.++ +||+|+
T Consensus 85 lA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vi~~~~--~~~~~~~~a~~~~~~~-g~~~~~~~~~~~~~-~g~~t~ 160 (404)
T PRK08198 85 VAYAASLLGIKATIVMPETAPLSKVKATRSYGAEVVLHGD--VYDEALAKAQELAEET-GATFVHPFDDPDVI-AGQGTI 160 (404)
T ss_pred HHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEecCCCCCccHH-HHHHHH
Confidence 9999999999999999999999999999999999999974 5899999999998886 78999999999988 699999
Q ss_pred HHHHHHhhCCCcCEEEEecCCCccHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----CCccccccCCCC--
Q 024040 164 GPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQP-----GKHLIQGIGAGV-- 232 (273)
Q Consensus 164 ~~Ei~~q~~~~~d~iv~p~G~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~----~~~~-----~~~~~~glg~~~-- 232 (273)
|+||++|++ ++|+||+|+|+||+++|++.+||+.+|++|||||||++++++. .+++ .++.+++++.+.
T Consensus 161 a~EI~~q~~-~~d~vv~~vG~GG~~~Gi~~~~k~~~p~~kiigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~g~~v~~~~ 239 (404)
T PRK08198 161 GLEILEDLP-DVDTVVVPIGGGGLISGVATAVKALRPEVRVIGVQAEGAPAMPESLAAGRPVELESVDTIADGIAVKRPG 239 (404)
T ss_pred HHHHHHhCC-CCCEEEEEeCHhHHHHHHHHHHHHhCCCCEEEEEEeCCChHHHHHHHcCCCEecCCCCccccccccCCcC
Confidence 999999994 7999999999999999999999999999999999999998763 3333 234556665432
Q ss_pred -CcccccccCCCeEEEeCHHHHHHHHHHHHHHcCceecccC
Q 024040 233 -IPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLRQLLY 272 (273)
Q Consensus 233 -~~~~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~~ps~ 272 (273)
.++.+.++++|+++.|+|+|+.+|+++|++++|+++|||+
T Consensus 240 ~~~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~g~~~e~sg 280 (404)
T PRK08198 240 DLTFEIIRELVDDVVTVSDEEIARAILLLLERAKLVVEGAG 280 (404)
T ss_pred HHHHHHHHHhCCEEEEECHHHHHHHHHHHHHhcCeEEehHH
Confidence 2334567899999999999999999999999999999986
No 22
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=100.00 E-value=8.7e-57 Score=420.57 Aligned_cols=263 Identities=43% Similarity=0.717 Sum_probs=232.7
Q ss_pred hHHHhhccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHH
Q 024040 8 KKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFI 87 (273)
Q Consensus 8 ~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~ 87 (273)
++.+...+++|||++++++++..|++||+|+|++|||||||+|++.+++.++.++|.+.+|.+ ||++|+||||+|+|++
T Consensus 2 ~~~~~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~-vv~~ssGN~g~alA~~ 80 (454)
T TIGR01137 2 RDNIIDLIGNTPLVRLNKVSKGIKCELLAKCEFFNPGGSVKDRIALRMIEDAEASGRLKPGDT-IIEPTSGNTGIGLALV 80 (454)
T ss_pred ccchHHhcCCCceEEccccCCCCCceEEEEEhhcCCCcchHHHHHHHHHHHHHHcCCCCCCCE-EEEeCCcHHHHHHHHH
Confidence 456788899999999999998888899999999999999999999999999999999888855 9999999999999999
Q ss_pred HHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChh---HHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhchH
Q 024040 88 AASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFE---GFVKKGEEILNRTPNGYILGQFENPANPEIHYETTG 164 (273)
Q Consensus 88 a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~ 164 (273)
|+++|++|+||||+++++.|+.+++.+||+|+.+++...++ ...+.+.+++++.++.+|++||+|+.++..||.|+|
T Consensus 81 a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~ 160 (454)
T TIGR01137 81 AAIKGYKCIIVLPEKMSNEKVDVLKALGAEIVRTPTAAAFDSPESHIGVAKRLVREIPGAHILDQYNNPSNPLAHYDGTG 160 (454)
T ss_pred HHHcCCeEEEEeCCCcCHHHHHHHHHCCCEEEEcCCccCCCchHHHHHHHHHHHHhCCCcEecccCCChhhHHHHHHhhH
Confidence 99999999999999999999999999999999998642233 235667778776546788999999999877999999
Q ss_pred HHHHHhhCCCcCEEEEecCCCccHHHHHHHHHhhCCCcEEEEEecCCCccccCCC------CCCccccccCCCCCccccc
Q 024040 165 PEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQ------PGKHLIQGIGAGVIPPVLD 238 (273)
Q Consensus 165 ~Ei~~q~~~~~d~iv~p~G~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~~~------~~~~~~~glg~~~~~~~~~ 238 (273)
+||++|+++.||+||+|+|+||+++|++.++|+.+|++||++|||++++.. .+. ..++.+++++.+..|..+.
T Consensus 161 ~Ei~~q~~~~~d~vv~~vG~Gg~~~G~~~~~~~~~~~~~vi~ve~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 239 (454)
T TIGR01137 161 PEILEQCEGKLDMFVAGAGTGGTITGIARYLKESNPKCRIVGADPEGSILA-QPENLNKTGRTPYKVEGIGYDFIPTVLD 239 (454)
T ss_pred HHHHHHhCCCCCEEEEecCchHHHHHHHHHHHhhCCCCEEEEEecCCCccc-CCCcccCCCCCCccCCCCCCCCCCCcCC
Confidence 999999976899999999999999999999999999999999999998633 221 1235677888766676777
Q ss_pred ccCCCeEEEeCHHHHHHHHHHHHHHcCceecccC
Q 024040 239 VAMLDEVITVSSEEAIETSKLLALKEGLLRQLLY 272 (273)
Q Consensus 239 ~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~~ps~ 272 (273)
.+++|+++.|+|+|+++++++|++++|+++||||
T Consensus 240 ~~~~d~~~~V~~~e~~~a~~~l~~~~gi~~~~ss 273 (454)
T TIGR01137 240 RKVVDEWIKTDDKESFKMARRLIKEEGLLVGGSS 273 (454)
T ss_pred chhCCeEEEECHHHHHHHHHHHHHHhCccCcHHH
Confidence 7889999999999999999999999999999996
No 23
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=100.00 E-value=3e-57 Score=416.47 Aligned_cols=261 Identities=23% Similarity=0.316 Sum_probs=229.5
Q ss_pred hhhhhHHHhhccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHH
Q 024040 4 KCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIG 83 (273)
Q Consensus 4 ~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a 83 (273)
+..+.+++...+++|||+++++|++.+|.+||+|+|++|||||||+|++.+++.++.+... ..+||++|+||||++
T Consensus 3 i~~a~~~i~~~i~~TPl~~~~~ls~~~g~~iy~K~E~~~ptGSfK~RgA~~~i~~l~~~~~----~~gvv~aSsGN~g~a 78 (409)
T TIGR02079 3 IEAARKRLKEVVPHTPLQLNERLSEKYGANIYLKREDLQPVRSYKIRGAYNFLKQLSDAQL----AKGVVCASAGNHAQG 78 (409)
T ss_pred HHHHHHHHhCcCCCCCccccHHHHHHhCCEEEEEecCCCCCCCcHHHHHHHHHHhCCHHhh----CCEEEEECccHHHHH
Confidence 4567889999999999999999999889999999999999999999999999987543321 234999999999999
Q ss_pred HHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE---EEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhh
Q 024040 84 LAFIAASRGYKLIIIMPSTYSIERRIILRALGAEV---YLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHY 160 (273)
Q Consensus 84 ~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v---~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~ 160 (273)
+|++|+++|++|+||||++++..|+++++.|||+| +.++ .+++++++.+++++++. +++|++||+||.++ +||
T Consensus 79 ~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~vv~v~~~g--~~~~~a~~~a~~~~~~~-g~~~~~~~~~~~~~-~g~ 154 (409)
T TIGR02079 79 FAYACRHLGVHGTVFMPATTPKQKIDRVKIFGGEFIEIILVG--DTFDQCAAAAREHVEDH-GGTFIPPFDDPRII-EGQ 154 (409)
T ss_pred HHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCCeeEEEEeC--CCHHHHHHHHHHHHHhc-CCEEeCCCCCHhHh-hhh
Confidence 99999999999999999999999999999999974 4444 45899999999998886 78999999999988 699
Q ss_pred hchHHHHHHhhCCCcCEEEEecCCCccHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----CCccccccCCC
Q 024040 161 ETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQP-----GKHLIQGIGAG 231 (273)
Q Consensus 161 ~t~~~Ei~~q~~~~~d~iv~p~G~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~----~~~~-----~~~~~~glg~~ 231 (273)
+|+++||++|++..||+||+|+|+||+++|++.++|+++|++|||||||++++++. .+++ .++.++|++.+
T Consensus 155 ~ti~~Ei~~q~~~~~D~vv~pvG~GG~~~Gia~~~k~~~p~~~vigVep~~~~~~~~s~~~g~~~~~~~~~t~a~g~~v~ 234 (409)
T TIGR02079 155 GTVAAEILDQLPEKPDYVVVPVGGGGLISGLTTYLAGTSPKTKIIGVEPEGAPSMKASLEAGEVVTLDKIDNFVDGAAVK 234 (409)
T ss_pred HHHHHHHHHhcCCCCCEEEEEecHhHHHHHHHHHHHHhCCCCEEEEEEeCCCCcHHHHHHCCCceecCCCCCeeccccCC
Confidence 99999999999766999999999999999999999999999999999999998764 2433 24567788776
Q ss_pred CCc---ccccccCCCeEEEeCHHHHHHHHHHHHHHcCceecccC
Q 024040 232 VIP---PVLDVAMLDEVITVSSEEAIETSKLLALKEGLLRQLLY 272 (273)
Q Consensus 232 ~~~---~~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~~ps~ 272 (273)
.++ +.+.+.++|+++.|+|+|+.+|+++|++++|+++|||+
T Consensus 235 ~~g~~~~~~~~~~vd~vv~V~d~e~~~a~~~l~~~~gi~ve~ag 278 (409)
T TIGR02079 235 RVGDLNFKALKDVPDEVTLVPEGAVCTTILDLYNLEGIVAEPAG 278 (409)
T ss_pred CCcHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHhcCceecchH
Confidence 433 22456789999999999999999999999999999986
No 24
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia. D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.
Probab=100.00 E-value=4.7e-57 Score=411.23 Aligned_cols=255 Identities=20% Similarity=0.242 Sum_probs=222.2
Q ss_pred cCCCcceecccccCCCC--------ceEEEEeCCCCC-CCchhhHHHHHHHHH-----HHHcCCCCCCC-----------
Q 024040 15 IGHTPMVYLNNVVDGCV--------ARIAAKLEMMQP-CSSVKDRIAYSMIKD-----AEDKGLITPGK----------- 69 (273)
Q Consensus 15 ~~~TPl~~~~~l~~~~g--------~~l~~K~E~~~p-tGS~K~R~a~~~~~~-----a~~~g~~~~g~----------- 69 (273)
+++|||+++++|++.+| .+||+|+|++|| |||||||++.+++.. +++.|.+.||.
T Consensus 50 ~~~TPLv~~~~ls~~~g~~~~~~~~~~v~~K~E~~nP~tGSfKdRgA~~~i~~l~~~~a~~~G~l~pg~~~~~~~~~~~~ 129 (404)
T cd06447 50 IIESPLLPIPRMKQALEKLYHQPIKGRLLLKADSHLPISGSIKARGGIYEVLKHAEKLALEHGLLTLEDDYSKLASEKFR 129 (404)
T ss_pred ccCCCceehHHHHHHhccccccCcCceEEEEecCCCCCCCChHHHHHHHHHHHHhHHHHHHhCCCCcccchhhhhhhhhh
Confidence 99999999999887654 799999999999 999999999999864 77888888875
Q ss_pred -----eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCe
Q 024040 70 -----TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNG 144 (273)
Q Consensus 70 -----~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~ 144 (273)
.+||++|+||||+|+|++|+++|++|+||||+++++.|++.|+.|||+|+.+++ +++++.+.+++++++.++.
T Consensus 130 ~~~~~~~VV~aSsGN~G~alA~~a~~~G~~~~IvvP~~~~~~K~~~ira~GAeVv~v~~--~~~~a~~~a~~la~~~~~~ 207 (404)
T cd06447 130 KLFSQYSIAVGSTGNLGLSIGIMAAALGFKVTVHMSADAKQWKKDKLRSKGVTVVEYET--DYSKAVEEGRKQAAADPMC 207 (404)
T ss_pred hcccCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHHCCCe
Confidence 369999999999999999999999999999999999999999999999999984 5889999999999887667
Q ss_pred EeeCCCCCCcchHhhhhchHHHHHHhhCC---C-----cCEEEEecCCCccHHHHHHHHHhh-CCCcEEEEEecCCCccc
Q 024040 145 YILGQFENPANPEIHYETTGPEIWNDSGG---K-----VDAFIAGIGTGGTVTGAGRFLKEK-NPNIKVYGIEPSESAVL 215 (273)
Q Consensus 145 ~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~---~-----~d~iv~p~G~Gg~~~Gi~~~~k~~-~~~~~vigVe~~~~~~~ 215 (273)
+|+++++++..+ +||+|+++||++|+++ + ||+||+|+|+||+++|++++||+. .|+++||+|||++++.+
T Consensus 208 ~~v~~~n~~~~i-aG~~T~g~EI~eQl~~~~~~vD~~~Pd~VvvpvG~GGli~GIa~~lK~~~~p~~kVigVeP~~ap~~ 286 (404)
T cd06447 208 YFVDDENSRDLF-LGYAVAASRLKAQLAELGIKVDAEHPLFVYLPCGVGGAPGGVAFGLKLIFGDNVHCFFAEPTHSPCM 286 (404)
T ss_pred EeCCCCCchhHH-hhHHHHHHHHHHHhhhccCccccCCCCEEEEecCccHHHHHHHHHHHHhcCCCCEEEEEccCCChHH
Confidence 899997666655 7999999999999952 3 458999999999999999999997 78899999999998765
Q ss_pred c----CCCC-----------CCccccccCCCCC---cccccccCCCeEEEeCHHHHHHHHHHHHHHcCceecccC
Q 024040 216 N----GGQP-----------GKHLIQGIGAGVI---PPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLRQLLY 272 (273)
Q Consensus 216 ~----~~~~-----------~~~~~~glg~~~~---~~~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~~ps~ 272 (273)
. .+.+ ..+.++|++++.. ++.+.++.+|+++.|+|+|+.+++++|++++|+++|||+
T Consensus 287 ~~s~~ag~~~~~~~~~~g~~~~TiadGl~~~~p~~~~~~~~~~~vd~~v~Vsd~ei~~a~r~La~~~gi~vepSg 361 (404)
T cd06447 287 LLGMATGLHDKISVQDIGIDNRTAADGLAVGRPSGLVGKLMEPLLSGIYTVEDDELYRLLAMLKDSENIEVEPSA 361 (404)
T ss_pred HHHHHcCCCccccccccCCCccchhhhhcCCCcchhHHHHHHHhCCcEEEECHHHHHHHHHHHHHHcCcEEeHHH
Confidence 2 2211 2456778887642 233456789999999999999999999999999999997
No 25
>PRK08638 threonine dehydratase; Validated
Probab=100.00 E-value=6.1e-57 Score=404.14 Aligned_cols=259 Identities=26% Similarity=0.340 Sum_probs=227.4
Q ss_pred hhhhhHHHhhccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHH
Q 024040 4 KCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIG 83 (273)
Q Consensus 4 ~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a 83 (273)
+..++.++.+.+++|||+++++|++..|++||+|+|++|||||||||++.+++.++.+... ..+|+++|+||||+|
T Consensus 14 i~~a~~~i~~~i~~TPlv~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~i~~~~~~~~----~~~vv~~SsGN~g~a 89 (333)
T PRK08638 14 IIEAKQRLAGRIRKTPLPRSNYLSERCKGEIFLKLENMQRTGSFKIRGAFNKLSSLTDAEK----RKGVVACSAGNHAQG 89 (333)
T ss_pred HHHHHHHhhCcCcCCCceechhhHHhhCCeEEEEeccCCccCCcHHHHHHHHHHhccHHhc----CCeEEEeCCcHHHHH
Confidence 4567889999999999999999998888999999999999999999999999998765332 234999999999999
Q ss_pred HHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhch
Q 024040 84 LAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETT 163 (273)
Q Consensus 84 ~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~ 163 (273)
+|++|+.+|++|+||||+++++.|+++++.+||+|+.+++ +++++.+.+++++++. +++|++||+||.++ .||+|+
T Consensus 90 lA~~aa~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~a~~~-g~~~~~~~~~~~~~-~g~~t~ 165 (333)
T PRK08638 90 VALSCALLGIDGKVVMPKGAPKSKVAATCGYGAEVVLHGD--NFNDTIAKVEEIVEEE-GRTFIPPYDDPKVI-AGQGTI 165 (333)
T ss_pred HHHHHHHcCCCEEEEeCCCCcHHHHHHHHHcCCEEEEECc--CHHHHHHHHHHHHHhc-CCEEcCcCCCcchh-ccccHH
Confidence 9999999999999999999999999999999999999974 5888999999998886 78999999999988 699999
Q ss_pred HHHHHHhhCCCcCEEEEecCCCccHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCCC-----CccccccCCCCCc
Q 024040 164 GPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQPG-----KHLIQGIGAGVIP 234 (273)
Q Consensus 164 ~~Ei~~q~~~~~d~iv~p~G~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~----~~~~~-----~~~~~glg~~~~~ 234 (273)
++||++|+ +++|+||+|+|+||+++|++.+||+.+|++|||+|||++++++. .+.+. .+..++++.. .|
T Consensus 166 a~Ei~~q~-~~~d~vv~~vG~Gg~~~Gv~~~lk~~~~~~~vigVep~g~~~~~~s~~~g~~~~~~~~~ti~~gl~~~-~p 243 (333)
T PRK08638 166 GLEILEDL-WDVDTVIVPIGGGGLIAGIAVALKSINPTIHIIGVQSENVHGMAASFYAGEITTHRTTGTLADGCDVS-RP 243 (333)
T ss_pred HHHHHhhc-CCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECCCchHHHHHHCCCcccCCCCCCeeccccCC-Cc
Confidence 99999999 57999999999999999999999999999999999999997643 34332 2334555443 23
Q ss_pred ccc----cccCCCeEEEeCHHHHHHHHHHHHHHcCceecccC
Q 024040 235 PVL----DVAMLDEVITVSSEEAIETSKLLALKEGLLRQLLY 272 (273)
Q Consensus 235 ~~~----~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~~ps~ 272 (273)
.++ .++++|+++.|+|+|+++++++|++++|+++|||+
T Consensus 244 ~~~~~~~~~~~~d~~v~Vsd~ea~~a~~~l~~~~gi~~e~sg 285 (333)
T PRK08638 244 GNLTYEIVRELVDDIVLVSEDEIRNAMKDLIQRNKVVTEGAG 285 (333)
T ss_pred cHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCCeechhH
Confidence 333 35789999999999999999999999999999985
No 26
>PRK08639 threonine dehydratase; Validated
Probab=100.00 E-value=4.5e-57 Score=417.13 Aligned_cols=263 Identities=23% Similarity=0.329 Sum_probs=229.4
Q ss_pred hhhhhHHHhhccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHH
Q 024040 4 KCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIG 83 (273)
Q Consensus 4 ~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a 83 (273)
+..+++++.+.+++|||++++++++..|++||+|+|++|||||||+|+|.+++.++.+... ..+||++|+||||++
T Consensus 12 i~~a~~~i~~~i~~TPl~~~~~ls~~~g~~l~~K~E~~~ptGSfK~RgA~~~i~~l~~~~~----~~~Vv~aSsGN~g~a 87 (420)
T PRK08639 12 IDKAAKRLKDVVPETPLQRNDYLSEKYGANVYLKREDLQPVRSYKLRGAYNAISQLSDEEL----AAGVVCASAGNHAQG 87 (420)
T ss_pred HHHHHHHHhCcCcCCCccchHHHHHHhCCEEEEEecCCCCCCCcHHHHHHHHHHhCCHHhh----CCEEEEECccHHHHH
Confidence 4567889999999999999999998888999999999999999999999999988543221 235999999999999
Q ss_pred HHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeC-CCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhc
Q 024040 84 LAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLAD-PAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYET 162 (273)
Q Consensus 84 ~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t 162 (273)
+|++|+++|++|+||||++++..|++.++.|||+|+.+. ...+++++++.+.+++++. +++|++||+||.++ +||+|
T Consensus 88 lA~~a~~~G~~~~IvmP~~~~~~k~~~~r~~GA~vv~v~~~g~~~~~a~~~a~~~a~~~-g~~~~~~~~~~~~~-~G~~t 165 (420)
T PRK08639 88 VAYACRHLGIPGVIFMPVTTPQQKIDQVRFFGGEFVEIVLVGDTFDDSAAAAQEYAEET-GATFIPPFDDPDVI-AGQGT 165 (420)
T ss_pred HHHHHHHcCCCEEEEECCCChHHHHHHHHHcCCCeeEEEEeCcCHHHHHHHHHHHHHhc-CCcccCCCCChhHh-cchhH
Confidence 999999999999999999999999999999999754321 1246899999999999886 79999999999988 69999
Q ss_pred hHHHHHHhhCCC--cCEEEEecCCCccHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----CCccccccCCC
Q 024040 163 TGPEIWNDSGGK--VDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQP-----GKHLIQGIGAG 231 (273)
Q Consensus 163 ~~~Ei~~q~~~~--~d~iv~p~G~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~----~~~~-----~~~~~~glg~~ 231 (273)
+|+||++|+++. ||+||+|+|+||+++|++.++|+.+|++|||||||++++++. .+.+ ..+.++|++.+
T Consensus 166 ig~EI~eq~~~~~~~D~vv~~vG~GG~~aGva~~~k~~~p~~~vigVep~~~~~~~~s~~~g~~~~~~~~~t~a~gi~v~ 245 (420)
T PRK08639 166 VAVEILEQLEKEGSPDYVFVPVGGGGLISGVTTYLKERSPKTKIIGVEPAGAASMKAALEAGKPVTLEKIDKFVDGAAVA 245 (420)
T ss_pred HHHHHHHhccccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECCCCcHHHHHhCCCceeCCCCCCeecccccC
Confidence 999999999755 999999999999999999999999999999999999998764 2333 24567888765
Q ss_pred CC---cccccccCCCeEEEeCHHHHHHHHHHHHHHcCceecccC
Q 024040 232 VI---PPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLRQLLY 272 (273)
Q Consensus 232 ~~---~~~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~~ps~ 272 (273)
.. ++.+.++++|+++.|+|+|+.+|+++|++++|+++|||+
T Consensus 246 ~~g~~~~~~~~~~vd~~v~V~d~ei~~a~~~l~~~~gi~~e~sg 289 (420)
T PRK08639 246 RVGDLTFEILKDVVDDVVLVPEGAVCTTILELYNKEGIVAEPAG 289 (420)
T ss_pred CccHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCceecchH
Confidence 43 234457889999999999999999999999999999986
No 27
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=100.00 E-value=1.4e-56 Score=399.76 Aligned_cols=253 Identities=22% Similarity=0.256 Sum_probs=222.4
Q ss_pred CCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEE
Q 024040 17 HTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLI 96 (273)
Q Consensus 17 ~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~ 96 (273)
+|||++++++++.+|.+||+|+|++|||||||+|++.+++.++.++|. .++. +||++|+||||+|+|++|+.+|++|+
T Consensus 1 ~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~-~~~~-~vv~aSsGN~g~alA~~a~~~G~~~~ 78 (316)
T cd06448 1 KTPLIESTALSKTAGCNVFLKLENLQPSGSFKIRGIGHLCQKSAKQGL-NECV-HVVCSSGGNAGLAAAYAARKLGVPCT 78 (316)
T ss_pred CCCccccchhhHhhCCeEEEEeccCCCcCChHHHHHHHHHHHHHHhhc-ccCC-eEEEeCCcHHHHHHHHHHHHcCCCEE
Confidence 699999999998888999999999999999999999999999999884 3334 49999999999999999999999999
Q ss_pred EEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhchHHHHHHhhCC--C
Q 024040 97 IIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGG--K 174 (273)
Q Consensus 97 i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~--~ 174 (273)
||||+.+++.|+++|+.|||+|+.+++. .++++.+.+++++++.++++|++||+||.++ .||.|+++||++|+++ .
T Consensus 79 iv~p~~~~~~k~~~l~~~GA~v~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~n~~~~-~g~~t~~~Ei~~q~~~~~~ 156 (316)
T cd06448 79 IVVPESTKPRVVEKLRDEGATVVVHGKV-WWEADNYLREELAENDPGPVYVHPFDDPLIW-EGHSSMVDEIAQQLQSQEK 156 (316)
T ss_pred EEECCCCCHHHHHHHHHcCCEEEEECCc-hHHHHHHHHHHHHhccCCcEEeCCCCCchhh-ccccHHHHHHHHHccccCC
Confidence 9999999999999999999999999853 2667777788887765478999999999998 5999999999999975 5
Q ss_pred cCEEEEecCCCccHHHHHHHHHhhC-CCcEEEEEecCCCcccc----CCCC-----CCccccccCCCCCcc---cccccC
Q 024040 175 VDAFIAGIGTGGTVTGAGRFLKEKN-PNIKVYGIEPSESAVLN----GGQP-----GKHLIQGIGAGVIPP---VLDVAM 241 (273)
Q Consensus 175 ~d~iv~p~G~Gg~~~Gi~~~~k~~~-~~~~vigVe~~~~~~~~----~~~~-----~~~~~~glg~~~~~~---~~~~~~ 241 (273)
||+||+|+|+||+++|++++||+.+ ++++||+|||++++++. .+++ ..+.++|++.+..+. ...++.
T Consensus 157 ~D~vv~~vG~Gg~~~Gv~~~~k~~~~~~~~ii~Vep~g~~~~~~~~~~g~~~~~~~~~t~a~glg~~~~~~~~~~~~~~~ 236 (316)
T cd06448 157 VDAIVCSVGGGGLLNGIVQGLERNGWGDIPVVAVETEGAHSLNASLKAGKLVTLPKITSVATSLGAKTVSSQALEYAQEH 236 (316)
T ss_pred CCEEEEEeCchHHHHHHHHHHHhcCCCCCEEEEEeeCCChHHHHHHHcCCcEecCCCCchhhccCCCCcCHHHHHHHHhc
Confidence 9999999999999999999999996 99999999999998764 2322 245677888776543 234567
Q ss_pred CCeEEEeCHHHHHHHHHHHHHHcCceecccCC
Q 024040 242 LDEVITVSSEEAIETSKLLALKEGLLRQLLYE 273 (273)
Q Consensus 242 ~d~~v~v~d~e~~~a~~~l~~~eGi~~~ps~~ 273 (273)
+|+++.|+|+|+++++++|++++||++|||+.
T Consensus 237 ~~~~v~Vsd~e~~~a~~~l~~~~gi~~~~ssa 268 (316)
T cd06448 237 NIKSEVVSDRDAVQACLRFADDERILVEPACG 268 (316)
T ss_pred CCeEEEECHHHHHHHHHHHHHHcCceechhHH
Confidence 89999999999999999999999999999973
No 28
>PLN02550 threonine dehydratase
Probab=100.00 E-value=7.6e-57 Score=423.56 Aligned_cols=255 Identities=22% Similarity=0.298 Sum_probs=227.9
Q ss_pred HHhhccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHH
Q 024040 10 DVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAA 89 (273)
Q Consensus 10 ~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~ 89 (273)
++...+++|||+++++|++.+|++||+|+|++|||||||+|++.+++.++.++. ..+ +||++|+||||+++|++|+
T Consensus 102 ~v~~~i~~TPL~~s~~LS~~~g~~IylK~E~lqptGSFK~RGA~n~I~~L~~e~-~~~---GVV~aSaGNhAqgvA~aA~ 177 (591)
T PLN02550 102 KVYDVAIESPLQLAKKLSERLGVKVLLKREDLQPVFSFKLRGAYNMMAKLPKEQ-LDK---GVICSSAGNHAQGVALSAQ 177 (591)
T ss_pred hhhccccCChhhhhHHhhHhhCCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHhc-CCC---CEEEECCCHHHHHHHHHHH
Confidence 566889999999999999999999999999999999999999999999885443 223 3999999999999999999
Q ss_pred HcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhchHHHHHH
Q 024040 90 SRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWN 169 (273)
Q Consensus 90 ~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ 169 (273)
++|++|+||||++++..|++.++.|||+|+.++. +++++.+.+++++++. +++|++||+||.++ +||+|+|.||++
T Consensus 178 ~lGika~IvmP~~tp~~Kv~~~r~~GAeVvl~g~--~~dea~~~A~~la~e~-g~~fi~pfddp~vi-aGqgTig~EI~e 253 (591)
T PLN02550 178 RLGCDAVIAMPVTTPEIKWQSVERLGATVVLVGD--SYDEAQAYAKQRALEE-GRTFIPPFDHPDVI-AGQGTVGMEIVR 253 (591)
T ss_pred HcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEEECCCCChHHH-HHHHHHHHHHHH
Confidence 9999999999999999999999999999999984 5899999999998886 77899999999998 699999999999
Q ss_pred hhCCCcCEEEEecCCCccHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----CCccccccCCCC---Ccccc
Q 024040 170 DSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQP-----GKHLIQGIGAGV---IPPVL 237 (273)
Q Consensus 170 q~~~~~d~iv~p~G~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~----~~~~-----~~~~~~glg~~~---~~~~~ 237 (273)
|+++.+|+||+|+|+||+++|++.++|+++|++|||||||++++++. .+++ ..+.++|+.... .++.+
T Consensus 254 Ql~~~~D~VvvpVGgGGLiaGia~~lK~l~p~vkVIGVEp~~a~~~~~s~~~G~~v~~~~~~tiAdGiav~~~G~~t~~i 333 (591)
T PLN02550 254 QHQGPLHAIFVPVGGGGLIAGIAAYVKRVRPEVKIIGVEPSDANAMALSLHHGERVMLDQVGGFADGVAVKEVGEETFRL 333 (591)
T ss_pred HcCCCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHhcCCccccCCCCCccceeecCCCCHHHHHH
Confidence 99656999999999999999999999999999999999999998764 3433 235667777543 23445
Q ss_pred cccCCCeEEEeCHHHHHHHHHHHHHHcCceecccC
Q 024040 238 DVAMLDEVITVSSEEAIETSKLLALKEGLLRQLLY 272 (273)
Q Consensus 238 ~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~~ps~ 272 (273)
+++++|++|.|+|+|+.+|++++++++|+++||++
T Consensus 334 ~~~~vD~vV~Vsd~eI~~Ai~~l~e~~givvEpAG 368 (591)
T PLN02550 334 CRELVDGVVLVSRDAICASIKDMFEEKRSILEPAG 368 (591)
T ss_pred HHhhCCEEEEECHHHHHHHHHHHHHHCCCEEeHHH
Confidence 68899999999999999999999999999999985
No 29
>PRK06110 hypothetical protein; Provisional
Probab=100.00 E-value=6.9e-57 Score=403.20 Aligned_cols=260 Identities=18% Similarity=0.214 Sum_probs=228.6
Q ss_pred hhhhhHHHhhccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHH
Q 024040 4 KCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIG 83 (273)
Q Consensus 4 ~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a 83 (273)
+..++.++...+++|||+++++|++.+|.+||+|+|++|||||||+|++.+++.++.+++...+ .||++|+||||+|
T Consensus 8 i~~a~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~Rga~~~l~~a~~~~~~~~---~vv~aSsGN~g~a 84 (322)
T PRK06110 8 LEAAAAVVYAAMPPTPQYRWPLLAERLGCEVWVKHENHTPTGAFKVRGGLVYFDRLARRGPRVR---GVISATRGNHGQS 84 (322)
T ss_pred HHHHHHHHhCcCcCCCcccchhHHHHhCCeEEEEeccCCCcCCcHHHHHHHHHHHhhhhcCCCc---eEEEECCCHHHHH
Confidence 3567788999999999999999998888999999999999999999999999999988765333 3999999999999
Q ss_pred HHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhch
Q 024040 84 LAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETT 163 (273)
Q Consensus 84 ~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~ 163 (273)
+|++|+++|++|+||||+++++.|+++|+.+||+|+.+++ +++++.+.++++++++ +++|+++| ||.++ .||.|+
T Consensus 85 lA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~~~-~~~~~-~G~~t~ 159 (322)
T PRK06110 85 VAFAARRHGLAATIVVPHGNSVEKNAAMRALGAELIEHGE--DFQAAREEAARLAAER-GLHMVPSF-HPDLV-RGVATY 159 (322)
T ss_pred HHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEcCCC-CChHH-hccchH
Confidence 9999999999999999999999999999999999999974 5889999999998886 78999998 67777 599999
Q ss_pred HHHHHHhhCCCcCEEEEecCCCccHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----CCccccccCCCCC-
Q 024040 164 GPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQP-----GKHLIQGIGAGVI- 233 (273)
Q Consensus 164 ~~Ei~~q~~~~~d~iv~p~G~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~----~~~~-----~~~~~~glg~~~~- 233 (273)
++||++|++ ++|+||+|+|+||+++|++.++|+.+|++|||+|||++++++. .+++ ..+.+++++....
T Consensus 160 ~~Ei~~q~~-~~D~vv~pvG~Gg~~~Gv~~~~k~~~~~~~vi~Vep~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~ 238 (322)
T PRK06110 160 ALELFRAVP-DLDVVYVPIGMGSGICGAIAARDALGLKTRIVGVVSAHAPAYALSFEAGRVVTTPVATTLADGMACRTPD 238 (322)
T ss_pred HHHHHhhCC-CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEeeCCChHHHHHHHcCCcccCCCCCCcccccCCCCcc
Confidence 999999995 7999999999999999999999999999999999999998753 3332 2345566655432
Q ss_pred c--ccccccCCCeEEEeCHHHHHHHHHHHHHHcCceecccC
Q 024040 234 P--PVLDVAMLDEVITVSSEEAIETSKLLALKEGLLRQLLY 272 (273)
Q Consensus 234 ~--~~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~~ps~ 272 (273)
+ +.+.++++|+++.|+|+|+++++++|++++|+++|||+
T Consensus 239 ~~~~~~~~~~~d~~~~Vsd~e~~~a~~~l~~~~gi~~e~ss 279 (322)
T PRK06110 239 PEALEVIRAGADRIVRVTDDEVAAAMRAYFTDTHNVAEGAG 279 (322)
T ss_pred HHHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCcEEehHH
Confidence 2 22346889999999999999999999999999999986
No 30
>PRK07048 serine/threonine dehydratase; Validated
Probab=100.00 E-value=9.6e-57 Score=402.36 Aligned_cols=260 Identities=20% Similarity=0.280 Sum_probs=227.0
Q ss_pred hhhhhHHHhhccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHH
Q 024040 4 KCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIG 83 (273)
Q Consensus 4 ~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a 83 (273)
...++.++..++++|||++++++++..|++||+|+|++|||||||||++.+++.++.+++. ..+||++|+||||+|
T Consensus 11 i~~a~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~a 86 (321)
T PRK07048 11 VAAAAARLAGVAHRTPVLTSRTADARTGAQVFFKCENFQRMGAFKFRGAYNALSQFSPEQR----RAGVVTFSSGNHAQA 86 (321)
T ss_pred HHHHHHHhhCCCCCCCCccchhhHHhcCCeEEEEeccCCCCCCeeHHHHHHHHHhhhHhhc----CCcEEEeCCCHHHHH
Confidence 4567889999999999999999988888999999999999999999999999998875432 234999999999999
Q ss_pred HHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhch
Q 024040 84 LAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETT 163 (273)
Q Consensus 84 ~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~ 163 (273)
+|++|+++|++|++|||+++++.|+++|+.|||+|+.+++ .++++.+.+++++++. +++|++||+|+.++ .||+|+
T Consensus 87 lA~~a~~~G~~~~vvvp~~~~~~k~~~~~~~GAeV~~~~~--~~~~~~~~a~~l~~~~-g~~~~~~~~~~~~~-~g~~t~ 162 (321)
T PRK07048 87 IALSARLLGIPATIVMPQDAPAAKVAATRGYGGEVVTYDR--YTEDREEIGRRLAEER-GLTLIPPYDHPHVI-AGQGTA 162 (321)
T ss_pred HHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEECCCCCcchh-hccchH
Confidence 9999999999999999999999999999999999999985 3678888899998886 78999999999987 699999
Q ss_pred HHHHHHhhCCCcCEEEEecCCCccHHHHHHHHHhhCCCcEEEEEecCCCccc----cCCCC-----CCccccccCCCC--
Q 024040 164 GPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVL----NGGQP-----GKHLIQGIGAGV-- 232 (273)
Q Consensus 164 ~~Ei~~q~~~~~d~iv~p~G~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~----~~~~~-----~~~~~~glg~~~-- 232 (273)
++||++|++ .||+||+|+|+||+++|+++++|+.+++++||+|||++++++ ..+++ ..+.++++....
T Consensus 163 ~~EI~~q~~-~~D~vv~~vGtGG~~~Gi~~~~k~~~~~~~vigvep~~~~~~~~s~~~g~~~~~~~~~tia~g~~~~~~~ 241 (321)
T PRK07048 163 AKELFEEVG-PLDALFVCLGGGGLLSGCALAARALSPGCKVYGVEPEAGNDGQQSFRSGEIVHIDTPRTIADGAQTQHLG 241 (321)
T ss_pred HHHHHhhcC-CCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEeeCCChhHHHHHHcCCcccCCCCCCcccccccCCcc
Confidence 999999995 799999999999999999999999999999999999998754 23332 233445544321
Q ss_pred -CcccccccCCCeEEEeCHHHHHHHHHHHHHHcCceecccC
Q 024040 233 -IPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLRQLLY 272 (273)
Q Consensus 233 -~~~~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~~ps~ 272 (273)
..+....+++|+++.|+|+|+++++++|++++|+++|||+
T Consensus 242 ~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~eps~ 282 (321)
T PRK07048 242 NYTFPIIRRLVDDIVTVSDAELVDAMRFFAERMKIVVEPTG 282 (321)
T ss_pred HHHHHHHHHhCCceEEECHHHHHHHHHHHHHhCCceeccHH
Confidence 1223346789999999999999999999999999999987
No 31
>PRK07334 threonine dehydratase; Provisional
Probab=100.00 E-value=8.9e-57 Score=413.54 Aligned_cols=260 Identities=20% Similarity=0.265 Sum_probs=232.5
Q ss_pred hhhhhHHHhhccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHH
Q 024040 4 KCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIG 83 (273)
Q Consensus 4 ~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a 83 (273)
+..+++++..++++|||+++++|++.+|.+||+|+|++|||||||||++.+++.++.+... ..+||++|+||||+|
T Consensus 10 i~~a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~i~~~~~~~~----~~~vv~aSsGN~g~a 85 (403)
T PRK07334 10 IRAAAARLAGQVLRTPCVHSRTLSQITGAEVWLKFENLQFTASFKERGALNKLLLLTEEER----ARGVIAMSAGNHAQG 85 (403)
T ss_pred HHHHHHHHhCCCCCCCccchHHHHHhhCCeEEEEeccCCCCCCchHHHHHHHHHhcCHHHh----CCcEEEECCcHHHHH
Confidence 4567889999999999999999998888999999999999999999999999998764432 234999999999999
Q ss_pred HHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhch
Q 024040 84 LAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETT 163 (273)
Q Consensus 84 ~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~ 163 (273)
+|++|+++|++|+||||+.+++.|+++|+.|||+|+.+++ +++++++.+++++++. +++|++||+||.++ .||+|+
T Consensus 86 lA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~--~~~~~~~~a~~l~~~~-~~~~~~~~~~~~~~-~g~~t~ 161 (403)
T PRK07334 86 VAYHAQRLGIPATIVMPRFTPTVKVERTRGFGAEVVLHGE--TLDEARAHARELAEEE-GLTFVHPYDDPAVI-AGQGTV 161 (403)
T ss_pred HHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECc--CHHHHHHHHHHHHHhc-CCEecCCCCCHHHH-HhHHHH
Confidence 9999999999999999999999999999999999999974 5889999999998885 78999999999988 699999
Q ss_pred HHHHHHhhCCCcCEEEEecCCCccHHHHHHHHHhhCCCcEEEEEecCCCccccC---CCC----CCccccccCCC---CC
Q 024040 164 GPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNG---GQP----GKHLIQGIGAG---VI 233 (273)
Q Consensus 164 ~~Ei~~q~~~~~d~iv~p~G~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~---~~~----~~~~~~glg~~---~~ 233 (273)
++||++|+ +.+|+||+|+|+||+++|+++++|+.+|++||++|||++++++.. +.. .++.+++++.+ ..
T Consensus 162 ~~Ei~~q~-~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~~vi~ve~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~ 240 (403)
T PRK07334 162 ALEMLEDA-PDLDTLVVPIGGGGLISGMATAAKALKPDIEIIGVQTELYPSMYAAIKGVALPCGGSTIAEGIAVKQPGQL 240 (403)
T ss_pred HHHHHhcC-CCCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEECCCchHHHHHhCCCccCCCCCccceecCCCccHH
Confidence 99999999 479999999999999999999999999999999999999987642 211 34667888853 34
Q ss_pred cccccccCCCeEEEeCHHHHHHHHHHHHHHcCceecccC
Q 024040 234 PPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLRQLLY 272 (273)
Q Consensus 234 ~~~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~~ps~ 272 (273)
|+.++++++|+++.|+|+|+++++++|++++|+++|||+
T Consensus 241 ~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~gi~v~~s~ 279 (403)
T PRK07334 241 TLEIVRRLVDDILLVSEADIEQAVSLLLEIEKTVVEGAG 279 (403)
T ss_pred HHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCCEEechH
Confidence 556677899999999999999999999999999999986
No 32
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=100.00 E-value=2.4e-56 Score=417.91 Aligned_cols=256 Identities=27% Similarity=0.348 Sum_probs=229.2
Q ss_pred HHHhhccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHH
Q 024040 9 KDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIA 88 (273)
Q Consensus 9 ~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a 88 (273)
.++.+.+++|||+++++|++.+|.+||+|+|++|||||||+|+|.+++..+.++.. .++||++|+||||+++|++|
T Consensus 9 ~~v~~~i~~TPL~~~~~Ls~~~g~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~~----~~gVV~aSaGNha~~vA~aa 84 (499)
T TIGR01124 9 ARVYEAAQETPLQKAAKLSERLGNRILIKREDLQPVFSFKLRGAYNKMAQLSPEQK----ARGVIAASAGNHAQGVAFSA 84 (499)
T ss_pred hHhhCccCCCCeeehHHHHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHHhhHHhc----CCEEEEECCCHHHHHHHHHH
Confidence 47889999999999999999889999999999999999999999999988744322 23599999999999999999
Q ss_pred HHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhchHHHHH
Q 024040 89 ASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIW 168 (273)
Q Consensus 89 ~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~ 168 (273)
+++|++|+||||++++..|++.++.+||+|+.++. +++++.+.+++++++. +++|++||+||.++ +||+|+|.||+
T Consensus 85 ~~~Gi~~~IvmP~~tp~~Kv~~~r~~GA~Vvl~g~--~~d~a~~~a~~la~~~-g~~~i~p~~~~~~i-~G~gtig~EI~ 160 (499)
T TIGR01124 85 ARLGLKALIVMPETTPDIKVDAVRGFGGEVVLHGA--NFDDAKAKAIELSQEK-GLTFIHPFDDPLVI-AGQGTLALEIL 160 (499)
T ss_pred HHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEeCc--CHHHHHHHHHHHHHhc-CCEeeCCCCChHHH-HhhHHHHHHHH
Confidence 99999999999999999999999999999999974 5899999999999886 78999999999988 69999999999
Q ss_pred HhhCCCcCEEEEecCCCccHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----CCccccccCCCCC---ccc
Q 024040 169 NDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQP-----GKHLIQGIGAGVI---PPV 236 (273)
Q Consensus 169 ~q~~~~~d~iv~p~G~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~----~~~~-----~~~~~~glg~~~~---~~~ 236 (273)
+|++.++|+||+|+|+||+++|++.++|+.+|++|||||||++++++. .+++ ..+.++|+++..+ ++.
T Consensus 161 ~q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVIgVep~~~~~~~~s~~~g~~~~~~~~~t~adgiav~~~g~~~~~ 240 (499)
T TIGR01124 161 RQVANPLDAVFVPVGGGGLAAGVAALIKQLMPEIKVIGVEPTDSDCMKQALDAGEPVDLDQVGLFADGVAVKRVGDETFR 240 (499)
T ss_pred HhCCCCCCEEEEccCccHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHhcCCceeCCCCCCccCcccCCCccHHHHH
Confidence 999667999999999999999999999999999999999999998764 2332 2355677765532 345
Q ss_pred ccccCCCeEEEeCHHHHHHHHHHHHHHcCceecccC
Q 024040 237 LDVAMLDEVITVSSEEAIETSKLLALKEGLLRQLLY 272 (273)
Q Consensus 237 ~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~~ps~ 272 (273)
++++++|+++.|+|+|+.+|+++|++++|+++|||+
T Consensus 241 ~~~~~vd~vv~V~d~ei~~ai~~l~~~~gii~Epag 276 (499)
T TIGR01124 241 LCQQYLDDIVTVDTDEVCAAIKDLFEDTRAVAEPAG 276 (499)
T ss_pred HHHHhCCEEEEECHHHHHHHHHHHHHhcCcEEechH
Confidence 667899999999999999999999999999999996
No 33
>PRK08813 threonine dehydratase; Provisional
Probab=100.00 E-value=2.9e-56 Score=399.36 Aligned_cols=250 Identities=23% Similarity=0.290 Sum_probs=222.5
Q ss_pred hhhhhHHHhhccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHH
Q 024040 4 KCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIG 83 (273)
Q Consensus 4 ~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a 83 (273)
+..++.++..++.+|||++++.+ +||+|+|++|||||||+|++.+++.++.+.+. .+.||++|+||||+|
T Consensus 26 i~~A~~~i~~~i~~TPL~~~~~l------~v~lK~E~~nptGSfK~RgA~~~l~~a~~~~~----~~~VV~aSsGN~G~a 95 (349)
T PRK08813 26 VLAAQARLRRYLSPTPLHYAERF------GVWLKLENLQRTGSYKVRGALNALLAGLERGD----ERPVICASAGNHAQG 95 (349)
T ss_pred HHHHHHHHhCcCCCCCeEECCCC------cEEEEecCCCCcCCCHHHHHHHHHHHHHHcCC----CCeEEEECCCHHHHH
Confidence 45678899999999999998765 49999999999999999999999999999886 334999999999999
Q ss_pred HHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhch
Q 024040 84 LAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETT 163 (273)
Q Consensus 84 ~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~ 163 (273)
+|++|+++|++|+||||+++++.|+++++.|||+|+.+++ +|+++.+.+++++++. +++|++||+||.++ +||+|+
T Consensus 96 lA~aa~~~Gi~~~IvvP~~~~~~K~~~i~~~GAeVv~~g~--~~~~a~~~a~~la~~~-g~~~v~~~~np~~i-~G~~Ti 171 (349)
T PRK08813 96 VAWSAYRLGVQAITVMPHGAPQTKIAGVAHWGATVRQHGN--SYDEAYAFARELADQN-GYRFLSAFDDPDVI-AGQGTV 171 (349)
T ss_pred HHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEcCccCChHHH-HHHHHH
Confidence 9999999999999999999999999999999999999974 5899999999999886 88999999999999 599999
Q ss_pred HHHHHHhhCCCcCEEEEecCCCccHHHHHHHHHhhCCCcEEEEEecCCCcccc---CCCC-----CCccccccCCCC---
Q 024040 164 GPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN---GGQP-----GKHLIQGIGAGV--- 232 (273)
Q Consensus 164 ~~Ei~~q~~~~~d~iv~p~G~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~---~~~~-----~~~~~~glg~~~--- 232 (273)
++||++|. ||+||+|+|+||+++|++.++|+ +.+|||||||++++++. .+.+ ..+.++|++...
T Consensus 172 g~EI~e~~---pD~VvvpvGgGGliaGia~~lk~--~~~rVigVqpega~~~~~s~~g~~~~~~~~~tiadgl~~~~p~~ 246 (349)
T PRK08813 172 GIELAAHA---PDVVIVPIGGGGLASGVALALKS--QGVRVVGAQVEGVDSMARAIRGDLREIAPVATLADGVKVKIPGF 246 (349)
T ss_pred HHHHHcCC---CCEEEEEeCccHHHHHHHHHHhc--CCCEEEEEEECCCchHHHHHcCCCcccCCCCceecccccCCcch
Confidence 99999874 79999999999999999999996 46899999999997643 1221 346778887542
Q ss_pred CcccccccCCCeEEEeCHHHHHHHHHHHHHHcCceecccC
Q 024040 233 IPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLRQLLY 272 (273)
Q Consensus 233 ~~~~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~~ps~ 272 (273)
.++.+..+++|+++.|+|+|+.+|+++|++++|+++|||+
T Consensus 247 ~~~~i~~~~vd~vv~Vsd~ei~~a~~~l~~~~gl~vE~ag 286 (349)
T PRK08813 247 LTRRLCSSLLDDVVIVREAELRETLVRLALEEHVIAEGAG 286 (349)
T ss_pred hHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCcEEEEcH
Confidence 3445567889999999999999999999999999999986
No 34
>PRK06815 hypothetical protein; Provisional
Probab=100.00 E-value=2.6e-56 Score=398.70 Aligned_cols=260 Identities=24% Similarity=0.284 Sum_probs=228.1
Q ss_pred hhhhhHHHhhccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHH
Q 024040 4 KCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIG 83 (273)
Q Consensus 4 ~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a 83 (273)
+..++.++.+.+++|||+++++|++..|.+||+|+|++|||||||||++.+++.++.+... ..+||++|+||||+|
T Consensus 7 i~~a~~~~~~~i~~TPLv~~~~l~~~~g~~i~~K~E~~nptgS~KdR~a~~~~~~l~~~~~----~~~vv~aSsGN~g~a 82 (317)
T PRK06815 7 ILEAHQRLRPQVRVTPLEHSPLLSQHTGCEVYLKCEHLQHTGSFKFRGASNKLRLLNEAQR----QQGVITASSGNHGQG 82 (317)
T ss_pred HHHHHHHhhCCCCCCCccccHhHHHhhCCeEEEEecCCCCCCCcHHHHHHHHHHhcchhhc----CceEEEECCChHHHH
Confidence 4567889999999999999999998888999999999999999999999999987643321 234999999999999
Q ss_pred HHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhch
Q 024040 84 LAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETT 163 (273)
Q Consensus 84 ~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~ 163 (273)
+|++|+++|++|+||||+.+++.|++.|+.+||+|+.+++ +++++.+.+++++++. +++|++||+||.++ .||+|+
T Consensus 83 lA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~-~g~~t~ 158 (317)
T PRK06815 83 VALAAKLAGIPVTVYAPEQASAIKLDAIRALGAEVRLYGG--DALNAELAARRAAEQQ-GKVYISPYNDPQVI-AGQGTI 158 (317)
T ss_pred HHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEecCCCChhhh-cchhHH
Confidence 9999999999999999999999999999999999999986 4788888899988876 78899999999888 599999
Q ss_pred HHHHHHhhCCCcCEEEEecCCCccHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----CCccccccCCCCCc
Q 024040 164 GPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQP-----GKHLIQGIGAGVIP 234 (273)
Q Consensus 164 ~~Ei~~q~~~~~d~iv~p~G~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~----~~~~-----~~~~~~glg~~~~~ 234 (273)
++||++|++ .||+||+|+|+||+++|++.+||+++++++||||||++++++. .+++ .++.+++++.+..+
T Consensus 159 a~Ei~~q~~-~~d~vv~~vG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~ 237 (317)
T PRK06815 159 GMELVEQQP-DLDAVFVAVGGGGLISGIATYLKTLSPKTEIIGCWPANSPSLYTSLEAGEIVEVAEQPTLSDGTAGGVEP 237 (317)
T ss_pred HHHHHHhcC-CCCEEEEECcHHHHHHHHHHHHHHhCCCCEEEEEEeCCCCcHHHHHHCCCcccCCCCCChhhhhccCCcc
Confidence 999999995 6999999999999999999999999999999999999998764 2332 23456666544322
Q ss_pred ----ccccccCCCeEEEeCHHHHHHHHHHHHHHcCceecccC
Q 024040 235 ----PVLDVAMLDEVITVSSEEAIETSKLLALKEGLLRQLLY 272 (273)
Q Consensus 235 ----~~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~~ps~ 272 (273)
..+..+++|+++.|+|+|+++++++|++++||++|||+
T Consensus 238 ~~~~~~~~~~~~~~~~~V~d~e~~~a~~~la~~~gi~vepss 279 (317)
T PRK06815 238 GAITFPLCQQLIDQKVLVSEEEIKEAMRLIAETDRWLIEGAA 279 (317)
T ss_pred cHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCCeEecHH
Confidence 23456789999999999999999999999999999986
No 35
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=100.00 E-value=2.1e-56 Score=408.92 Aligned_cols=246 Identities=25% Similarity=0.339 Sum_probs=221.9
Q ss_pred CcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEE
Q 024040 18 TPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLII 97 (273)
Q Consensus 18 TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i 97 (273)
|||+++++|++..|.+||+|+|++|||||||+|++.+++.++.+++. .++||++|+||||+++|++|+++|++|+|
T Consensus 1 TPl~~~~~ls~~~g~~i~~K~E~~~ptgS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~alA~~a~~~G~~~~i 76 (380)
T TIGR01127 1 TPLIYSTTLSDITGSEVYLKLENLQKTGSFKIRGALNKIANLSEDQR----QRGVVAASAGNHAQGVAYAAKKFGIKAVI 76 (380)
T ss_pred CCceehHHHHHHhCCeEEEEecCCCCCCCcHHHHHHHHHHhcchhcc----CCEEEEECCCHHHHHHHHHHHHcCCCEEE
Confidence 89999999999889999999999999999999999999999988775 23599999999999999999999999999
Q ss_pred EecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhchHHHHHHhhCCCcCE
Q 024040 98 IMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDA 177 (273)
Q Consensus 98 ~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~ 177 (273)
|||++++..|+++++.|||+|+.++. +++++++.+++++++. +++|++||+|+.++ +||+|+++||++|++ +||+
T Consensus 77 v~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~a~~~a~~~~~~~-~~~~~~~~~~~~~~-~g~~t~~~Ei~~q~~-~~D~ 151 (380)
T TIGR01127 77 VMPESAPPSKVKATKSYGAEVILHGD--DYDEAYAFATSLAEEE-GRVFVHPFDDEFVM-AGQGTIGLEIMEDIP-DVDT 151 (380)
T ss_pred EEcCCCcHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEecCCCCChhhh-hhhHHHHHHHHHhCC-CCCE
Confidence 99999999999999999999999974 5899999999998886 78999999999988 699999999999994 7999
Q ss_pred EEEecCCCccHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----CCccccccCCCCC---cccccccCCCeE
Q 024040 178 FIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQP-----GKHLIQGIGAGVI---PPVLDVAMLDEV 245 (273)
Q Consensus 178 iv~p~G~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~----~~~~-----~~~~~~glg~~~~---~~~~~~~~~d~~ 245 (273)
||+|+|+||+++|++.++|+.+|++|||||||++++++. .+++ ..+.++|++.+.. ++.+.++++|++
T Consensus 152 vv~~vG~Gg~~aGi~~~~k~~~p~~kvigVe~~~~~~~~~~~~~g~~~~~~~~~~~a~g~~~~~~~~~~~~~~~~~vd~~ 231 (380)
T TIGR01127 152 VIVPVGGGGLISGVASAAKQINPNVKVIGVEAEGAPSMYESLREGKIKAVESVRTIADGIAVKKPGDLTFNIIKEYVDDV 231 (380)
T ss_pred EEEEeChHHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHcCCceecCCCCCeecchhCCCccHHHHHHHHHhCCEE
Confidence 999999999999999999999999999999999998763 3433 2455677775432 334566899999
Q ss_pred EEeCHHHHHHHHHHHHHHcCceecccC
Q 024040 246 ITVSSEEAIETSKLLALKEGLLRQLLY 272 (273)
Q Consensus 246 v~v~d~e~~~a~~~l~~~eGi~~~ps~ 272 (273)
+.|+|+|+.+|+++|++++|+++|||+
T Consensus 232 v~V~d~e~~~a~~~l~~~~gi~~e~s~ 258 (380)
T TIGR01127 232 VTVDEEEIANAIYLLLERHKILAEGAG 258 (380)
T ss_pred EEECHHHHHHHHHHHHHhcCeEechHH
Confidence 999999999999999999999999986
No 36
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=100.00 E-value=2.2e-56 Score=390.71 Aligned_cols=259 Identities=21% Similarity=0.268 Sum_probs=236.0
Q ss_pred hhhHHHhhccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHH
Q 024040 6 EIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLA 85 (273)
Q Consensus 6 ~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A 85 (273)
..+.++...+-.|||.++-.|++..|.++|+|+|++||+||||.||+.+++.+.-+++. ..+|+++|.||||+|+|
T Consensus 55 ~~~~~i~~~~~~TPl~~s~~lS~~~g~~vyLK~E~lQpsgSFK~RGa~~~~~kla~~~~----~~gViasSaGNha~a~A 130 (457)
T KOG1250|consen 55 SAHFKIYPVIVETPLLKSVALSKKAGMPVYLKREDLQPSGSFKIRGAGNALQKLAKQQK----KAGVIASSAGNHAQAAA 130 (457)
T ss_pred hhhhccccceecccchhhhhhhhhcCCceEEEehhcccccceehhhHHHHHHHHHHhhh----cCceEEecCccHHHHHH
Confidence 45667889999999999989999999999999999999999999999999998777664 45599999999999999
Q ss_pred HHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhchHH
Q 024040 86 FIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGP 165 (273)
Q Consensus 86 ~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~ 165 (273)
++|+++|+|++||||..++..|++.++.+||+|+..+. +|+++...|+++++++ ++.|++|||||+.| +|++|++.
T Consensus 131 yaa~~LgipaTIVmP~~tp~~kiq~~~nlGA~Vil~G~--~~deAk~~a~~lAke~-gl~yI~pfDhP~I~-aGqgTig~ 206 (457)
T KOG1250|consen 131 YAARKLGIPATIVMPVATPLMKIQRCRNLGATVILSGE--DWDEAKAFAKRLAKEN-GLTYIPPFDHPDIW-AGQGTIGL 206 (457)
T ss_pred HHHHhcCCceEEEecCCChHHHHHHHhccCCEEEEecc--cHHHHHHHHHHHHHhc-CceecCCCCCchhh-cCcchHHH
Confidence 99999999999999999999999999999999999984 5999999999999997 99999999999999 79999999
Q ss_pred HHHHhhCCCcCEEEEecCCCccHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----CCccccccCCCCC---
Q 024040 166 EIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQP-----GKHLIQGIGAGVI--- 233 (273)
Q Consensus 166 Ei~~q~~~~~d~iv~p~G~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~----~~~~-----~~~~~~glg~~~~--- 233 (273)
||++|+...+++|+||||+||+++||+.++|+..|+++|||||+++|.++. .+++ ..+.++|++...+
T Consensus 207 EIl~ql~~~~~AI~vpVGGGGLiaGIat~vk~~~p~vkIIGVEt~~a~~f~~sl~~g~~V~lp~i~s~AdglaV~~Vg~~ 286 (457)
T KOG1250|consen 207 EILEQLKEPDGAIVVPVGGGGLIAGIATGVKRVGPHVKIIGVETEGAHSFNASLKAGKPVTLPKITSLADGLAVKTVGEN 286 (457)
T ss_pred HHHHhhcCCCCeEEEecCCchhHHHHHHHHHHhCCCCceEEEeecCcHHHHHHHhcCCeeecccccchhcccccchhhHH
Confidence 999999766669999999999999999999999999999999999998764 4544 3566788887654
Q ss_pred cccccccCCCeEEEeCHHHHHHHHHHHHHHcCceecccC
Q 024040 234 PPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLRQLLY 272 (273)
Q Consensus 234 ~~~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~~ps~ 272 (273)
.+.+.+.++|+++.|+|+|+..|+.+|.++|..++||++
T Consensus 287 tf~~a~~~~d~vvvV~~~ei~aaI~~l~edek~vvEpAg 325 (457)
T KOG1250|consen 287 TFELAQKLVDRVVVVEDDEIAAAILRLFEDEKMVVEPAG 325 (457)
T ss_pred HHHHHHhcCceEEEeccHHHHHHHHHHHHhhhheeccch
Confidence 344567899999999999999999999999999999986
No 37
>PRK06608 threonine dehydratase; Provisional
Probab=100.00 E-value=4.8e-56 Score=399.13 Aligned_cols=259 Identities=18% Similarity=0.169 Sum_probs=227.1
Q ss_pred hhhhhHHHhhccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHH
Q 024040 4 KCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIG 83 (273)
Q Consensus 4 ~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a 83 (273)
+..+++++...+++|||+++++|++.+|++||+|+|++|||||||+|++.+++.++.++|.+. ++||++|+||||+|
T Consensus 10 i~~A~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~---~~vv~~SsGN~g~a 86 (338)
T PRK06608 10 IAAAHNRIKQYLHLTPIVHSESLNEMLGHEIFFKVESLQKTGAFKVRGVLNHLLELKEQGKLP---DKIVAYSTGNHGQA 86 (338)
T ss_pred HHHHHHHHhCcCcCCCccchHhHHHHhCCEEEEEeCCCCCCCCcHHHHHHHHHHHhhhhcCcC---CeEEEECCCHHHHH
Confidence 456788999999999999999999988999999999999999999999999999999988643 35999999999999
Q ss_pred HHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhch
Q 024040 84 LAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETT 163 (273)
Q Consensus 84 ~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~ 163 (273)
+|++|+++|++|+||||+++++.|+++++.+||+|+.++. .+++.+.+++ +++ +++||++||+|+.++ +||+|+
T Consensus 87 lA~~a~~~G~~~~vv~p~~~~~~k~~~l~~~GA~V~~~~~---~~~~~~~a~~-~~~-~~~~~~~~~~~~~~~-~g~~t~ 160 (338)
T PRK06608 87 VAYASKLFGIKTRIYLPLNTSKVKQQAALYYGGEVILTNT---RQEAEEKAKE-DEE-QGFYYIHPSDSDSTI-AGAGTL 160 (338)
T ss_pred HHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC---HHHHHHHHHH-HHh-CCCEEcCCCCCHHHh-ccHHHH
Confidence 9999999999999999999999999999999999999974 3667777777 544 478999999999988 599999
Q ss_pred HHHHHHhhCCCcCEEEEecCCCccHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC------CCccccccCCCCC
Q 024040 164 GPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQP------GKHLIQGIGAGVI 233 (273)
Q Consensus 164 ~~Ei~~q~~~~~d~iv~p~G~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~----~~~~------~~~~~~glg~~~~ 233 (273)
+.||++|++.+||+||+|+|+||+++|++.++|+.+++++||+|||++++++. .+++ ..+.+++++.+..
T Consensus 161 a~Ei~~q~~~~~D~vv~~vG~GGt~~Gi~~~~k~~~~~~~vigVep~~~~~~~~s~~~g~~~~~~~~~~t~~~gl~~~~~ 240 (338)
T PRK06608 161 CYEALQQLGFSPDAIFASCGGGGLISGTYLAKELISPTSLLIGSEPLNANDAYLSLKNNKIYRLNYSPNTIADGLKTLSV 240 (338)
T ss_pred HHHHHHhcCCCcCEEEEeechhHHHHHHHHHHHhcCCCCEEEEEeeCCChHHHHHHHcCCeEeCCCCCCCeecccCCCCC
Confidence 99999999768999999999999999999999999999999999999997542 3332 2456677776433
Q ss_pred c---ccccccCCCeEEEeCHHHHHHHHHHHHHHcCceecccC
Q 024040 234 P---PVLDVAMLDEVITVSSEEAIETSKLLALKEGLLRQLLY 272 (273)
Q Consensus 234 ~---~~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~~ps~ 272 (273)
. +.+. +.+|+++.|+|+|+++++++|++++|+++|||+
T Consensus 241 ~~~~~~~~-~~~d~~v~Vsd~e~~~a~~~l~~~~gi~vepss 281 (338)
T PRK06608 241 SARTFEYL-KKLDDFYLVEEYEIYYWTAWLTHLLKVICEPSS 281 (338)
T ss_pred CHHHHHHH-HhCCCEEEECHHHHHHHHHHHHHHcCcEEchHH
Confidence 2 2222 347999999999999999999999999999997
No 38
>PRK02991 D-serine dehydratase; Provisional
Probab=100.00 E-value=7e-56 Score=408.01 Aligned_cols=255 Identities=22% Similarity=0.254 Sum_probs=222.5
Q ss_pred cCCCcceecccccCCCC--------ceEEEEeCCCCC-CCchhhHHHHHHHHH-----HHHcCCCCCCC-----------
Q 024040 15 IGHTPMVYLNNVVDGCV--------ARIAAKLEMMQP-CSSVKDRIAYSMIKD-----AEDKGLITPGK----------- 69 (273)
Q Consensus 15 ~~~TPl~~~~~l~~~~g--------~~l~~K~E~~~p-tGS~K~R~a~~~~~~-----a~~~g~~~~g~----------- 69 (273)
+++|||++++.+++.+| .+||+|+|++|| |||||+|++.+++.. +++.|.+.|+.
T Consensus 73 ~~~TPL~~~~~l~~~~g~~~~~~~~~~V~lK~E~~np~tGSFK~RGA~~~i~~l~~~~a~~~G~~~~~~~~~~l~~~~~~ 152 (441)
T PRK02991 73 IIESPLVAIPAMQKALEKEYGQPISGRLLLKKDSHLPISGSIKARGGIYEVLKHAEKLALEAGLLTLDDDYSKLASPEFR 152 (441)
T ss_pred ccCCCceehHHHHHHhcccccCCcCceEEEEEcCCCCCcCChHHHHHHHHHHHhhHHHHHHhCCCCcCcchhhhcchhhh
Confidence 89999999999887664 699999999999 999999999999875 45778776664
Q ss_pred -----eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCe
Q 024040 70 -----TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNG 144 (273)
Q Consensus 70 -----~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~ 144 (273)
.+||++|+||||+|+|++|+++|++|+||||+++++.|+++|+.|||+|+.+++ +|+++.+.+++++++.+++
T Consensus 153 ~~~~~~~VV~aSsGN~G~alA~aA~~~G~~~tIvvP~~a~~~K~~~ir~~GAeVi~~~~--~~~~a~~~A~~la~~~~~~ 230 (441)
T PRK02991 153 QFFSQYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADARQWKKDKLRSHGVTVVEYEG--DYGVAVEEGRKAAESDPNC 230 (441)
T ss_pred hhccCcEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhcCCe
Confidence 359999999999999999999999999999999999999999999999999985 5899999999998876568
Q ss_pred EeeCCCCCCcchHhhhhchHHHHHHhhCC--------CcCEEEEecCCCccHHHHHHHHHhh-CCCcEEEEEecCCCccc
Q 024040 145 YILGQFENPANPEIHYETTGPEIWNDSGG--------KVDAFIAGIGTGGTVTGAGRFLKEK-NPNIKVYGIEPSESAVL 215 (273)
Q Consensus 145 ~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~--------~~d~iv~p~G~Gg~~~Gi~~~~k~~-~~~~~vigVe~~~~~~~ 215 (273)
+|+++++++.++ +||+|+++||++|+++ .||+||+|+|+||+++|++.+||+. .+++|||+|||++++++
T Consensus 231 ~~~~~~~~~~~i-aG~~Tig~EI~eQl~~~~~~vD~~~Pd~VvvpvGgGGliaGia~~lk~~~~~~~kVigVEp~ga~~~ 309 (441)
T PRK02991 231 YFIDDENSRTLF-LGYAVAGLRLKAQLAEQGIVVDADHPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPCM 309 (441)
T ss_pred EeCCCCCchhHH-HhHHHHHHHHHHHhhhccCccccCCCCEEEEEeCccHHHHHHHHHHHHhcCCCCEEEEEecCCChHH
Confidence 999999877776 7999999999999963 2679999999999999999999997 68899999999998764
Q ss_pred c----CCCC-----------CCccccccCCCCCc---ccccccCCCeEEEeCHHHHHHHHHHHHHHcCceecccC
Q 024040 216 N----GGQP-----------GKHLIQGIGAGVIP---PVLDVAMLDEVITVSSEEAIETSKLLALKEGLLRQLLY 272 (273)
Q Consensus 216 ~----~~~~-----------~~~~~~glg~~~~~---~~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~~ps~ 272 (273)
. .++. ..+.++|++++..+ +.+.++++|+++.|+|+|+++++++|++++|+++|||+
T Consensus 310 ~~s~~~G~~~~~~~~~~g~~~~Tiadgl~~~~~~~~~~~~~~~~vd~~v~VsD~ei~~a~~~L~~~~gi~vEpS~ 384 (441)
T PRK02991 310 LLGLMTGLHDQISVQDIGIDNLTAADGLAVGRASGFVGRAMERLLDGVYTVSDETLYRLLGLLADTEGIRLEPSA 384 (441)
T ss_pred HHHHhcCCCcceeccccCCCCcchhhhhcCCCcchhHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCceeeHHH
Confidence 2 2321 23567888876432 34456789999999999999999999999999999997
No 39
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase. This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.
Probab=100.00 E-value=2e-55 Score=403.56 Aligned_cols=256 Identities=20% Similarity=0.241 Sum_probs=223.2
Q ss_pred ccCCCcceecccccCCC--------CceEEEEeCCCCC-CCchhhHHHHHHHHH-----HHHcCCCCCCC----------
Q 024040 14 LIGHTPMVYLNNVVDGC--------VARIAAKLEMMQP-CSSVKDRIAYSMIKD-----AEDKGLITPGK---------- 69 (273)
Q Consensus 14 ~~~~TPl~~~~~l~~~~--------g~~l~~K~E~~~p-tGS~K~R~a~~~~~~-----a~~~g~~~~g~---------- 69 (273)
++++|||++++++++.+ +.+||+|+|++|| |||||+|++.+++.. +++.|.+.|+.
T Consensus 67 ~~~~TPL~~~~~ls~~~~~~~~~~~~~~v~lKlE~~nP~tGSfKdRGA~~~i~~~~~~~A~~~G~l~~~~~~~~l~e~~~ 146 (431)
T TIGR02035 67 GIIESPLVEIFNMQKELEKKYQQEIPGRLLLKMDSHLPISGSIKARGGIYEVLKHAEELALEAGLLKLDDDYSILAEKKF 146 (431)
T ss_pred CccCCCccchHHHHHHhhhcccCCcCceEEEEecccCCccCCcHHHHHHHHHHHhhHHHHHHcCCCCcCcchhhhcchhh
Confidence 99999999999998743 5799999999999 999999999999975 67888887764
Q ss_pred ------eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCC
Q 024040 70 ------TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPN 143 (273)
Q Consensus 70 ------~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~ 143 (273)
.+||++|+||||+|+|++|+++|++|+||||+++++.|++.|+.|||+|+.+++ +|+++.+.+++++++.++
T Consensus 147 ~~~~~~~~Vv~aSsGN~G~slA~~Aa~lG~~~~IvmP~~a~~~K~~~ir~~GAeVv~~~~--~~~~a~~~A~~la~~~~~ 224 (431)
T TIGR02035 147 KDFFSRYSIAVGSTGNLGLSIGIISAALGFQVTVHMSADAKQWKKDKLRSKGVTVVEYES--DYGVAVEEGRKNADADPM 224 (431)
T ss_pred hhcccCceEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhcCC
Confidence 369999999999999999999999999999999999999999999999999985 589999999999988766
Q ss_pred eEeeCCCCCCcchHhhhhchHHHHHHhhCC--------CcCEEEEecCCCccHHHHHHHHHhh-CCCcEEEEEecCCCcc
Q 024040 144 GYILGQFENPANPEIHYETTGPEIWNDSGG--------KVDAFIAGIGTGGTVTGAGRFLKEK-NPNIKVYGIEPSESAV 214 (273)
Q Consensus 144 ~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~--------~~d~iv~p~G~Gg~~~Gi~~~~k~~-~~~~~vigVe~~~~~~ 214 (273)
.+|++++ |+.++.+||+|+++||++|+++ .||+|++|+|+||+++||++++|++ ++++|||+|||+++++
T Consensus 225 ~~~~d~~-n~~n~~aG~~T~g~EI~eQl~~~~~~~d~~~pd~V~vp~G~GGli~Gia~~lK~~~~~~vkvi~VEp~~s~~ 303 (431)
T TIGR02035 225 CYFVDDE-NSRNLFLGYAVAASRLKKQFDKKGIVVDKEHPLFVYLPCGVGGGPGGVAFGLKLAFGDNVHCFFAEPTHSPC 303 (431)
T ss_pred eEECCCC-CcccHHhhHHHHHHHHHHhhhccccccccCCCCEEEEEeCcCHHHHHHHHHHHHhcCCCCEEEEEeeCCCHH
Confidence 7888774 5555558999999999999953 4779999999999999999999997 7899999999999986
Q ss_pred cc----CCC-----------CCCccccccCCCCCcc---cccccCCCeEEEeCHHHHHHHHHHHHHHcCceecccC
Q 024040 215 LN----GGQ-----------PGKHLIQGIGAGVIPP---VLDVAMLDEVITVSSEEAIETSKLLALKEGLLRQLLY 272 (273)
Q Consensus 215 ~~----~~~-----------~~~~~~~glg~~~~~~---~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~~ps~ 272 (273)
+. .+. ...+.++||+++..+. .+.++++|+++.|+|+|+.+++++|++++|+++|||+
T Consensus 304 ~~~s~~~g~~~~~~~~~~g~~~~T~AdGlav~~p~~~~~~~~~~~vd~vv~VsD~ei~~a~~~L~~~egi~vEpSs 379 (431)
T TIGR02035 304 MLLGVYTGLHEKISVQDIGIDNITAADGLAVGRPSGFVGRLMEPLLSGIYTVDDYTLYDLLRILAESEGKRLEPSA 379 (431)
T ss_pred HHHHHhcCCCccccccccCCCCCceeccccCCCcchhHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCCeEcHHH
Confidence 42 222 1246788888875332 2345689999999999999999999999999999996
No 40
>PRK09224 threonine dehydratase; Reviewed
Probab=100.00 E-value=1.5e-55 Score=414.05 Aligned_cols=256 Identities=26% Similarity=0.340 Sum_probs=228.3
Q ss_pred HHHhhccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHH
Q 024040 9 KDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIA 88 (273)
Q Consensus 9 ~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a 88 (273)
.++...+++|||+++++|++.+|.+||+|+|++|||||||+|+|.+++..+.+... .++||++|+||||+++|++|
T Consensus 12 ~~v~~~~~~TPL~~~~~Ls~~~g~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~~----~~gvV~aSaGNha~avA~aa 87 (504)
T PRK09224 12 ARVYDVAQETPLEKAPKLSARLGNQVLLKREDLQPVFSFKLRGAYNKMAQLTEEQL----ARGVITASAGNHAQGVALSA 87 (504)
T ss_pred HHhcCcCCCCCceehhHhHHHhCCEEEEEecCCCCCCCChHHHHHHHHHhhhHHhc----CCEEEEECcCHHHHHHHHHH
Confidence 47889999999999999999899999999999999999999999999998764321 23599999999999999999
Q ss_pred HHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhchHHHHH
Q 024040 89 ASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIW 168 (273)
Q Consensus 89 ~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~ 168 (273)
+++|++|+||||++++..|++.++.+||+|+.+++ +|+++.+.+.+++++. +++|++||+||.++ +||+|++.||+
T Consensus 88 ~~lGi~~~IvmP~~tp~~K~~~~r~~GA~Vi~~g~--~~~~a~~~a~~l~~~~-g~~~v~~f~~~~~i-~G~gTi~~EI~ 163 (504)
T PRK09224 88 ARLGIKAVIVMPVTTPDIKVDAVRAFGGEVVLHGD--SFDEAYAHAIELAEEE-GLTFIHPFDDPDVI-AGQGTIAMEIL 163 (504)
T ss_pred HHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEeCCCCCcHHH-HhHHHHHHHHH
Confidence 99999999999999999999999999999999984 5899999999998885 78999999999998 69999999999
Q ss_pred HhhCCCcCEEEEecCCCccHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----CCccccccCCCCC---ccc
Q 024040 169 NDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQP-----GKHLIQGIGAGVI---PPV 236 (273)
Q Consensus 169 ~q~~~~~d~iv~p~G~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~----~~~~-----~~~~~~glg~~~~---~~~ 236 (273)
+|++..+|+||+|+|+||+++|++.++|..+|++|||||||++++++. .+++ ..+.++++++..+ ++.
T Consensus 164 ~q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVigVe~~~~~~~~~s~~~g~~~~~~~~~~~adg~av~~~g~~~~~ 243 (504)
T PRK09224 164 QQHPHPLDAVFVPVGGGGLIAGVAAYIKQLRPEIKVIGVEPEDSACLKAALEAGERVDLPQVGLFADGVAVKRIGEETFR 243 (504)
T ss_pred HhccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHhcCCCccCCCCCcccCcccCCCccHHHHH
Confidence 999655999999999999999999999999999999999999998764 3333 2345577765432 344
Q ss_pred ccccCCCeEEEeCHHHHHHHHHHHHHHcCceecccC
Q 024040 237 LDVAMLDEVITVSSEEAIETSKLLALKEGLLRQLLY 272 (273)
Q Consensus 237 ~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~~ps~ 272 (273)
+.++++|+++.|+|+|+.+|+++|++++|+++|||+
T Consensus 244 ~~~~~vd~~v~Vsd~ei~~a~~~l~~~~~~~~epag 279 (504)
T PRK09224 244 LCQEYVDDVITVDTDEICAAIKDVFEDTRSIAEPAG 279 (504)
T ss_pred HHHhcCCeEEEECHHHHHHHHHHHHHhcCeEEcHHH
Confidence 567899999999999999999999999999999986
No 41
>PRK08246 threonine dehydratase; Provisional
Probab=100.00 E-value=2.8e-55 Score=390.60 Aligned_cols=254 Identities=23% Similarity=0.315 Sum_probs=222.5
Q ss_pred hhhhhHHHhhccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHH
Q 024040 4 KCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIG 83 (273)
Q Consensus 4 ~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a 83 (273)
+..+++++...+++|||+++++++.. +.+||+|+|++|||||||+|++.+++.++.+ + + ++||++|+||||+|
T Consensus 10 i~~a~~~i~~~i~~TPl~~~~~l~~~-~~~i~~K~E~~nptGS~K~R~a~~~~~~~~~-~----~-~~vv~aSsGN~g~a 82 (310)
T PRK08246 10 VRAAAQRIAPHIRRTPVLEADGAGFG-PAPVWLKLEHLQHTGSFKARGAFNRLLAAPV-P----A-AGVVAASGGNAGLA 82 (310)
T ss_pred HHHHHHHHhCcCCCCCeeeccccccC-CCEEEEEECCCCCCCCCHHHHHHHHHHhhcc-c----C-CeEEEeCCCHHHHH
Confidence 45678899999999999999998876 7899999999999999999999999988765 2 2 34999999999999
Q ss_pred HHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhch
Q 024040 84 LAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETT 163 (273)
Q Consensus 84 ~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~ 163 (273)
+|++|+++|++|+||||+.+++.|+++++.+||+|+.+++ +++++++.+.+++++. +++|++||+||.++ .||+|+
T Consensus 83 ~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-g~~~~~~~~n~~~i-~g~~t~ 158 (310)
T PRK08246 83 VAYAAAALGVPATVFVPETAPPAKVARLRALGAEVVVVGA--EYADALEAAQAFAAET-GALLCHAYDQPEVL-AGAGTL 158 (310)
T ss_pred HHHHHHHcCCCEEEEECCCCcHHHHHHHHHCCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEeCCCCCChhhh-cchHHH
Confidence 9999999999999999999999999999999999999985 4788899999988876 78999999999988 599999
Q ss_pred HHHHHHhhCCCcCEEEEecCCCccHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCCCCc-----cccccCCCCC-
Q 024040 164 GPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQPGKH-----LIQGIGAGVI- 233 (273)
Q Consensus 164 ~~Ei~~q~~~~~d~iv~p~G~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~----~~~~~~~-----~~~glg~~~~- 233 (273)
++||++|+ +.||+||+|+|+||+++|++.+|+. .+||++|||++++++. .+++.+. ..++++.+..
T Consensus 159 ~~Ei~eq~-~~~D~iv~~vG~GG~~~Gi~~~~~~---~~~vi~ve~~~~~~~~~s~~~g~~~~~~~~~~~~~~l~~~~~~ 234 (310)
T PRK08246 159 GLEIEEQA-PGVDTVLVAVGGGGLIAGIAAWFEG---RARVVAVEPEGAPTLHAALAAGEPVDVPVSGIAADSLGARRVG 234 (310)
T ss_pred HHHHHHhc-CCCCEEEEecCccHHHHHHHHHhcC---CCEEEEEeeCCChHHHHHHHcCCcccCCCCCceeccccCCCcc
Confidence 99999999 4799999999999999999999964 4899999999998764 3443222 2344555433
Q ss_pred --cccccccCCCeEEEeCHHHHHHHHHHHHHHcCceecccC
Q 024040 234 --PPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLRQLLY 272 (273)
Q Consensus 234 --~~~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~~ps~ 272 (273)
++.+.++++|+++.|+|+|+++++++|++++|+++|||+
T Consensus 235 ~~~~~~~~~~~~~~~~Vsd~e~~~a~~~l~~~egi~~e~s~ 275 (310)
T PRK08246 235 EIAFALARAHVVTSVLVSDEAIIAARRALWEELRLAVEPGA 275 (310)
T ss_pred HHHHHHHHhcCCeEEEECHHHHHHHHHHHHHHcCceeehHH
Confidence 334667889999999999999999999999999999997
No 42
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=100.00 E-value=1.2e-55 Score=392.84 Aligned_cols=262 Identities=25% Similarity=0.339 Sum_probs=232.1
Q ss_pred cchhhhhHHHhhccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHH
Q 024040 2 EDKCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTG 81 (273)
Q Consensus 2 ~~~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g 81 (273)
.++++.++.+.+.+++|||+++++|++.+|.+||+|+|++|||||||||++.+++.++++.+. ..+||++|+||||
T Consensus 2 ~~~~~~~~~i~~~ig~TPl~~~~~l~~~~g~~i~~K~E~~nptgS~Kdr~a~~~l~~~~~~~~----~~~iv~~ssGN~g 77 (304)
T cd01562 2 EDILAAAARIKPVVRRTPLLTSPTLSELLGAEVYLKCENLQKTGSFKIRGAYNKLLSLSEEER----AKGVVAASAGNHA 77 (304)
T ss_pred hHHHHHHHHHhCcCCCCCcccchhhHHHhCCeEEEEeccCCCcCCcHHHhHHHHHHhcCHhhc----CCcEEEECCCHHH
Confidence 356788999999999999999999998888999999999999999999999999999887762 2349999999999
Q ss_pred HHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhh
Q 024040 82 IGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYE 161 (273)
Q Consensus 82 ~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~ 161 (273)
+|+|++|+++|++|++|||++.++.|+++|+.+||+|+.+++ +++++.+.+++++++. +++|++|++|+.++ .||.
T Consensus 78 ~alA~~a~~~G~~~~ivvp~~~~~~k~~~l~~~Ga~vi~~~~--~~~~~~~~a~~la~~~-~~~~~~~~~n~~~~-~g~~ 153 (304)
T cd01562 78 QGVAYAAKLLGIPATIVMPETAPAAKVDATRAYGAEVVLYGE--DFDEAEAKARELAEEE-GLTFIHPFDDPDVI-AGQG 153 (304)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEEeCCCCCcchh-ccHH
Confidence 999999999999999999999999999999999999999996 3889999999999886 78999999999988 5999
Q ss_pred chHHHHHHhhCCCcCEEEEecCCCccHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----CCccccccCCCC
Q 024040 162 TTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQP-----GKHLIQGIGAGV 232 (273)
Q Consensus 162 t~~~Ei~~q~~~~~d~iv~p~G~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~----~~~~-----~~~~~~glg~~~ 232 (273)
++++||++|++ .||+||+|+|+||+++|++++||+.++.+|||+|||.+++++. .+.. ..+..++++.+.
T Consensus 154 ~~~~Ei~~q~~-~~d~vv~~vGtGgt~~Gi~~~lk~~~~~~kvigv~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~ 232 (304)
T cd01562 154 TIGLEILEQVP-DLDAVFVPVGGGGLIAGIATAVKALSPNTKVIGVEPEGAPAMAQSLAAGKPVTLPEVDTIADGLAVKR 232 (304)
T ss_pred HHHHHHHHhcC-CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEECCCchHHHHHHcCCcccCCCCCcccccccCCC
Confidence 99999999996 4999999999999999999999999999999999999987653 2222 234455666543
Q ss_pred C---cccccccCCCeEEEeCHHHHHHHHHHHHHHcCceecccC
Q 024040 233 I---PPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLRQLLY 272 (273)
Q Consensus 233 ~---~~~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~~ps~ 272 (273)
. ++.+.++++|.++.|+|+|+++++++|+++||+++||||
T Consensus 233 ~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~eGi~~~pss 275 (304)
T cd01562 233 PGELTFEIIRKLVDDVVTVSEDEIAAAMLLLFEREKLVAEPAG 275 (304)
T ss_pred chHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCceEchhH
Confidence 2 223456789999999999999999999999999999996
No 43
>PRK06352 threonine synthase; Validated
Probab=100.00 E-value=2.4e-55 Score=396.91 Aligned_cols=254 Identities=22% Similarity=0.274 Sum_probs=218.3
Q ss_pred HHHhhccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHH
Q 024040 9 KDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIA 88 (273)
Q Consensus 9 ~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a 88 (273)
+++++.+|+|||+++++|++.+|++||+|+|++|||||||||++.+++.++.++|. .+||++|+||||+|+|++|
T Consensus 20 ~~~~l~~G~TPL~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~i~~a~~~g~-----~~vV~aSsGN~G~AlA~~a 94 (351)
T PRK06352 20 PMISLAEGNTPLIPLPNLSKELGVTLYGKYEGLNPTGSFKDRGMVMAVAKAKEEGA-----EAVICASTGNTSAAAAAYA 94 (351)
T ss_pred CccccCCCCCCeeEcHhhHHHhCCeEEEEecCCCCccChHHHHHHHHHHHHHHCCC-----CEEEEECCcHHHHHHHHHH
Confidence 35788999999999999998888899999999999999999999999999999884 3599999999999999999
Q ss_pred HHcCCeEEEEecCC-CCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhchHHHH
Q 024040 89 ASRGYKLIIIMPST-YSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEI 167 (273)
Q Consensus 89 ~~~g~~~~i~~p~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei 167 (273)
+++|++|+||||++ .++.|+.+|+.|||+|+.+++ +++++.+.+++++++. ++++.+ +.||.++ .||.|+++||
T Consensus 95 a~~G~~~~ivvp~~~~~~~k~~~~~a~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~-~~n~~~~-~G~~t~~~EI 169 (351)
T PRK06352 95 TRAGLKAYIVIPEGKVALGKLAQAVMYGADIISIQG--NFDEALKSVRELAETE-AVTLVN-SVNPYRL-EGQKTAAFEI 169 (351)
T ss_pred HHcCCcEEEEEeCCCCcHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHhc-Cccccc-CCCccce-eeHHHHHHHH
Confidence 99999999999997 589999999999999999985 4888899999998875 566665 4599988 5999999999
Q ss_pred HHhhCCCcCEEEEecCCCccHHHHHHHHHhhCCC-----cEEEEEecCCCccccCCCCC---CccccccCCCCC-ccccc
Q 024040 168 WNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPN-----IKVYGIEPSESAVLNGGQPG---KHLIQGIGAGVI-PPVLD 238 (273)
Q Consensus 168 ~~q~~~~~d~iv~p~G~Gg~~~Gi~~~~k~~~~~-----~~vigVe~~~~~~~~~~~~~---~~~~~glg~~~~-~~~~~ 238 (273)
++|++..||+||+|+|+||+++|++++||+++++ +|||+|||++++++..+.+. .+.+++++.+.. .+...
T Consensus 170 ~~Q~~~~~D~vvv~vG~GG~~~Gi~~~lk~~~~~~~~~~~~vi~Vep~g~~~~~~g~~~~~~~~ia~~l~~~~~~~~~~~ 249 (351)
T PRK06352 170 CEQLGSAPDVLAIPVGNAGNISAYWKGFKEWNEAKASGLPRMHGFEAEGAAAIVQGKPIDNPETIATAIRIGNPASWGLA 249 (351)
T ss_pred HHHcCCCCCEEEEECCchHHHHHHHHHHHHHHhcCCCCCCEEEEEeeCCCCHHHhCCCcCCCCcceeEEEeCCCCcHHHH
Confidence 9999767999999999999999999999998876 89999999999876655442 234455544421 11222
Q ss_pred ccCCC----eEEEeCHHHHHHHHHHHHHHcCceecccC
Q 024040 239 VAMLD----EVITVSSEEAIETSKLLALKEGLLRQLLY 272 (273)
Q Consensus 239 ~~~~d----~~v~v~d~e~~~a~~~l~~~eGi~~~ps~ 272 (273)
...+| .++.|+|+|+++++++|++++||++||||
T Consensus 250 ~~~~d~~~g~~~~V~d~e~~~a~r~la~~eGi~vepss 287 (351)
T PRK06352 250 EAARDESGGYIHSVTDDEIVNAYKKIAAQDGVFIEPGS 287 (351)
T ss_pred HHHHHHhCCEEEEECHHHHHHHHHHHHhhcCceEchhH
Confidence 22333 58999999999999999999999999996
No 44
>PRK08197 threonine synthase; Validated
Probab=100.00 E-value=3.5e-54 Score=395.25 Aligned_cols=254 Identities=22% Similarity=0.193 Sum_probs=221.1
Q ss_pred HHhhccCCCcceecccccCCCC-ceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHH
Q 024040 10 DVTELIGHTPMVYLNNVVDGCV-ARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIA 88 (273)
Q Consensus 10 ~i~~~~~~TPl~~~~~l~~~~g-~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a 88 (273)
.+++++|+|||+++++|++.+| .+||+|+|++|||||||||++.+++.+|.+.|. .+||++|+||||+|+|++|
T Consensus 72 ~vslgeG~TPL~~~~~l~~~~G~~~l~~K~E~~nPtGSfKdRga~~~i~~a~~~g~-----~~vv~aSsGN~g~alA~~a 146 (394)
T PRK08197 72 IVSLGEGMTPLLPLPRLGKALGIGRLWVKDEGLNPTGSFKARGLAVGVSRAKELGV-----KHLAMPTNGNAGAAWAAYA 146 (394)
T ss_pred CCccCcCCCCceEhHHHHHHhCCCcEEEEeCCCCCCcCcHHhHHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHHHH
Confidence 3788999999999999998888 599999999999999999999999999999885 4599999999999999999
Q ss_pred HHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhchHHHHH
Q 024040 89 ASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIW 168 (273)
Q Consensus 89 ~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~ 168 (273)
+++|++|+||||+++++.|+.+|+.+||+|+.+++ +++++.+.+++++++. ++++++++.||.++ +|++|+++||+
T Consensus 147 a~~G~~~~v~vp~~~~~~k~~~~~~~GA~Vi~v~~--~~~~~~~~a~~~~~~~-g~~~~~~~~np~~i-eG~~t~a~Ei~ 222 (394)
T PRK08197 147 ARAGIRATIFMPADAPEITRLECALAGAELYLVDG--LISDAGKIVAEAVAEY-GWFDVSTLKEPYRI-EGKKTMGLELA 222 (394)
T ss_pred HHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CcccccCCCCccch-hcHHHHHHHHH
Confidence 99999999999999999999999999999999985 4788888898888876 78999999999999 59999999999
Q ss_pred HhhCC-CcCEEEEecCCCccHHHHHHHHHhh-------CCCcEEEEEecCCCcccc----CCCC-------CCccccccC
Q 024040 169 NDSGG-KVDAFIAGIGTGGTVTGAGRFLKEK-------NPNIKVYGIEPSESAVLN----GGQP-------GKHLIQGIG 229 (273)
Q Consensus 169 ~q~~~-~~d~iv~p~G~Gg~~~Gi~~~~k~~-------~~~~~vigVe~~~~~~~~----~~~~-------~~~~~~glg 229 (273)
+|++. .||+||+|+|+||+++|++++|+++ .+.+||++|||++++++. .+.. ..+.++++.
T Consensus 223 eQl~~~~pD~vvvpvG~Gg~~~Gi~~~~k~~~~~g~~~~~~p~ii~Vq~~g~~~l~~~~~~g~~~~~~~~~~~tia~gl~ 302 (394)
T PRK08197 223 EQLGWRLPDVILYPTGGGVGLIGIWKAFDELEALGWIGGKRPRLVAVQAEGCAPIVKAWEEGKEESEFWEDAHTVAFGIR 302 (394)
T ss_pred HHcCCCCCCEEEEeCCChHHHHHHHHHHHHHHHcCCcCCCCCeEEEEEeCCCCHHHHHHHcCCCccccCCCCCceehhhh
Confidence 99975 4999999999999999999999987 378999999999997763 2221 123445554
Q ss_pred CCCCcc-----cccccCCCeEEEeCHHHHHHHHHHHHHHcCceecccC
Q 024040 230 AGVIPP-----VLDVAMLDEVITVSSEEAIETSKLLALKEGLLRQLLY 272 (273)
Q Consensus 230 ~~~~~~-----~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~~ps~ 272 (273)
.+.... ...+++.+.++.|+|+|+++++++|+++|||++||||
T Consensus 303 ~~~~~~~~~~~~~~~~~~g~~v~V~d~e~~~a~~~la~~eGi~vepss 350 (394)
T PRK08197 303 VPKALGDFLVLDAVRETGGCAIAVSDDAILAAQRELAREEGLFACPEG 350 (394)
T ss_pred CCCCCCHHHHHHHHHHhCCEEEEeCHHHHHHHHHHHHhcCCceECchH
Confidence 432111 1123667889999999999999999999999999997
No 45
>PRK06721 threonine synthase; Reviewed
Probab=100.00 E-value=7.4e-54 Score=387.54 Aligned_cols=255 Identities=25% Similarity=0.285 Sum_probs=219.0
Q ss_pred hhHHHhhccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHH
Q 024040 7 IKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAF 86 (273)
Q Consensus 7 ~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~ 86 (273)
..+++++.+|+|||++++++++.+|.+||+|+|++|||||||||++.+++.++.++|. .+||++|+||||+|+|+
T Consensus 18 ~~~~~~l~~G~TPl~~l~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~i~~a~~~g~-----~~vV~aSsGN~G~alA~ 92 (352)
T PRK06721 18 NTPDVSLMEGNTPLIPLLNISKQLGIQLYGKYEGANPTGSFKDRGMVMAVAKAKEEGS-----EAIICASTGNTSASAAA 92 (352)
T ss_pred CCCccccCcCCCCeeEchhhHHHhCCeEEEEecCCCCccchHHHHHHHHHHHHHHCCC-----CEEEEECCcHHHHHHHH
Confidence 3456788999999999999988888899999999999999999999999999999884 35999999999999999
Q ss_pred HHHHcCCeEEEEecCCC-CHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhchHH
Q 024040 87 IAASRGYKLIIIMPSTY-SIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGP 165 (273)
Q Consensus 87 ~a~~~g~~~~i~~p~~~-~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~ 165 (273)
+|+++|++|+||||+.. ++.|+++|+.+||+|+.+++ +++++.+.+++++++. ++++.+ +.||.++ .||.|+++
T Consensus 93 ~aa~~G~~~~vvvp~~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~-~~n~~~~-~G~~t~~~ 167 (352)
T PRK06721 93 YAARLGMKCIIVIPEGKIAHGKLAQAVAYGAEIISIEG--NFDDALKAVRNIAAEE-PITLVN-SVNPYRI-EGQKTAAF 167 (352)
T ss_pred HHHHCCCcEEEEECCCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhC-Cceecc-CCCchhh-hhhhhHHH
Confidence 99999999999999874 78999999999999999985 4888889999998876 566665 5688888 59999999
Q ss_pred HHHHhhCCCcCEEEEecCCCccHHHHHHH----HHhhC-CCcEEEEEecCCCccccCCCC---CCccccccCCCCCcccc
Q 024040 166 EIWNDSGGKVDAFIAGIGTGGTVTGAGRF----LKEKN-PNIKVYGIEPSESAVLNGGQP---GKHLIQGIGAGVIPPVL 237 (273)
Q Consensus 166 Ei~~q~~~~~d~iv~p~G~Gg~~~Gi~~~----~k~~~-~~~~vigVe~~~~~~~~~~~~---~~~~~~glg~~~~~~~~ 237 (273)
||++|++..||+||+|+|+||+++|++.+ +|..+ |++|||+|||++++++..+.. ..+.+++++.+. |..+
T Consensus 168 Ei~eq~~~~~D~ivv~vG~GG~l~G~~~G~~~~lk~~~~~~~~vigVep~~~~~~~~g~~~~~~~tia~~l~~~~-~~~~ 246 (352)
T PRK06721 168 EICDQLQRAPDVLAIPVGNAGNITAYWKGFCEYEKEKGYKKPRIHGFEAEGAAAIVKGHVIDEPETIATAIRIGN-PASW 246 (352)
T ss_pred HHHHHhCCCCCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCCeEEEEecCCCChHhhCCcCCCCCceeeccccCC-CCCH
Confidence 99999976799999999999999985544 45554 889999999999987765543 234556666553 2211
Q ss_pred ------cccCCCeEEEeCHHHHHHHHHHHHHHcCceecccC
Q 024040 238 ------DVAMLDEVITVSSEEAIETSKLLALKEGLLRQLLY 272 (273)
Q Consensus 238 ------~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~~ps~ 272 (273)
.+.++|+++.|+|+|+++++++|+++|||++||||
T Consensus 247 ~~~~~~~~~~~~~~~~V~d~e~~~a~~~la~~eGi~vepss 287 (352)
T PRK06721 247 SYAVEAAEQSHGEIDMVSDEEILHAYRLLAKSEGVFAEPGS 287 (352)
T ss_pred HHHHHHHHhcCCEEEEECHHHHHHHHHHHHHhcCcccCchH
Confidence 24578999999999999999999999999999997
No 46
>PRK07591 threonine synthase; Validated
Probab=100.00 E-value=4.4e-54 Score=396.84 Aligned_cols=255 Identities=20% Similarity=0.247 Sum_probs=223.2
Q ss_pred HHhhccCCCcceecccccCCCC-ceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHH
Q 024040 10 DVTELIGHTPMVYLNNVVDGCV-ARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIA 88 (273)
Q Consensus 10 ~i~~~~~~TPl~~~~~l~~~~g-~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a 88 (273)
++++.+|+|||+++++|++.+| .+||+|+|++|||||||||++.+++.+|.+.|. .+|+++|+||||+|+|++|
T Consensus 82 ~v~l~eG~TPLv~~~~l~~~lG~~~l~~K~E~~nPtGSfKdRga~~~v~~A~~~g~-----~~vv~aSsGN~g~alA~~a 156 (421)
T PRK07591 82 PVDLGPGFTPLVKADRLARELGLKNLYIKDDSVNPTHSFKDRVVSVALTAARELGF-----TTVACASTGNLANSVAAHA 156 (421)
T ss_pred CCcCCCCCCcceEhHHHHHHhCCCcEEEEeCCCCCccChHHHHHHHHHHHHHHcCC-----CEEEEeCCCHHHHHHHHHH
Confidence 4788999999999999998888 599999999999999999999999999999885 3499999999999999999
Q ss_pred HHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhchHHHHH
Q 024040 89 ASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIW 168 (273)
Q Consensus 89 ~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~ 168 (273)
+++|++|+||||+++++.|+.+++.|||+|+.+++ +++++.+.+++++++.++++|++++.||+.+ +|++|+++||+
T Consensus 157 a~~Gl~~~I~vP~~~~~~k~~~~~~~GA~Vi~v~g--~~d~a~~~a~~~~~~~~~~~~~n~~~~p~~i-eG~~Tia~Ei~ 233 (421)
T PRK07591 157 ARAGLDSCVFIPADLEAGKIVGTLVYGPTLVAVDG--NYDDVNRLCSELANEHEGWGFVNINLRPYYA-EGSKTLGYEVA 233 (421)
T ss_pred HHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhcCCEEEecCCCCcccc-cchHHHHHHHH
Confidence 99999999999999999999999999999999996 4889999999998876578899988899988 59999999999
Q ss_pred HhhCCC-cCEEEEecCCCccHHHHHHHHHhh-------CCCcEEEEEecCCCcccc----CCCC------CCccccccCC
Q 024040 169 NDSGGK-VDAFIAGIGTGGTVTGAGRFLKEK-------NPNIKVYGIEPSESAVLN----GGQP------GKHLIQGIGA 230 (273)
Q Consensus 169 ~q~~~~-~d~iv~p~G~Gg~~~Gi~~~~k~~-------~~~~~vigVe~~~~~~~~----~~~~------~~~~~~glg~ 230 (273)
+|+++. ||+||+|+|+||+++|++++|+++ .+.+|||+|||++++++. .+.. ..+.++++..
T Consensus 234 eQl~~~~pD~iv~pvG~Gg~~~Gv~~g~kel~~~g~i~~~~prii~Vq~~g~~~~~~~~~~g~~~~~~~~~~tia~~l~~ 313 (421)
T PRK07591 234 EQLGWRLPDQVVAPLASGSLLTKIDKGFQELIKVGLVEDKPVRVFGAQAEGCSPIAQAFKEGRDVVKPVKPNTIAKSLAI 313 (421)
T ss_pred HHcCCCCCCEEEEeCCchHHHHHHHHHHHHHHhcCCccCCCceEEEEecCCCCHHHHHHHcCCCcccCCCCCchhhheec
Confidence 999754 999999999999999999999997 578999999999987654 2221 2344556644
Q ss_pred CCCc-----ccccccCCCeEEEeCHHHHHHHHHHHHHHcCceecccC
Q 024040 231 GVIP-----PVLDVAMLDEVITVSSEEAIETSKLLALKEGLLRQLLY 272 (273)
Q Consensus 231 ~~~~-----~~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~~ps~ 272 (273)
+... ....+++.+.++.|+|+|+++|+++|++++||++||++
T Consensus 314 ~~p~~~~~~~~~i~~~~g~~v~Vsd~ei~~a~~~la~~eGi~~epss 360 (421)
T PRK07591 314 GNPADGPYALDIARRTGGAIEDVTDEEIIEGIKLLARTEGIFTETAG 360 (421)
T ss_pred CCCCCcHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhcCCeeecchH
Confidence 4211 12245677899999999999999999999999999986
No 47
>PRK07409 threonine synthase; Validated
Probab=100.00 E-value=9.2e-54 Score=387.53 Aligned_cols=253 Identities=24% Similarity=0.279 Sum_probs=219.5
Q ss_pred HHHhhccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHH
Q 024040 9 KDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIA 88 (273)
Q Consensus 9 ~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a 88 (273)
+++++++|+|||+++++|++..|++||+|+|++|||||||||++.+++.+++++|. .+||++|+||||+++|++|
T Consensus 23 ~~~~l~~g~TPl~~~~~l~~~~g~~i~~K~E~~nptGSfKdR~a~~~l~~a~~~g~-----~~iv~aSsGN~g~alA~~a 97 (353)
T PRK07409 23 PVVTLGEGNTPLIPAPNLSELLGVEVYVKYEGLNPTGSFKDRGMTMAVTKAKEEGA-----KAVICASTGNTSASAAAYA 97 (353)
T ss_pred CcccCCCCCCCEEEchhhHHHhCCeEEEEecCCCCccchHHHHHHHHHHHHHHCCC-----CEEEEECCcHHHHHHHHHH
Confidence 34788999999999999988788899999999999999999999999999998884 3599999999999999999
Q ss_pred HHcCCeEEEEecCC-CCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhchHHHH
Q 024040 89 ASRGYKLIIIMPST-YSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEI 167 (273)
Q Consensus 89 ~~~g~~~~i~~p~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei 167 (273)
+++|++|+||||+. .++.|++.|+.+||+|+.+++ +++++.+.+++++++. +++++++ .||.++ .||.|+++||
T Consensus 98 ~~~G~~~~ivvP~~~~~~~k~~~~~~~GA~Vi~~~~--~~~~~~~~a~~l~~~~-~~~~~~~-~n~~~~-~g~~t~~~EI 172 (353)
T PRK07409 98 ARAGLKAFVLIPEGKIALGKLAQAVMYGAEIIQIDG--NFDDALEIVRELAEKY-PVTLVNS-VNPYRI-EGQKTAAFEI 172 (353)
T ss_pred HHcCCCEEEEEcCCCCchhhHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHhc-CceecCC-CCchhh-hhHHHHHHHH
Confidence 99999999999997 588999999999999999985 4889999999998876 4677765 589988 5999999999
Q ss_pred HHhhCCCcCEEEEecCCCccHHHHHHHHHhhCC------CcEEEEEecCCCccccCCCCC---CccccccCCCCCcccc-
Q 024040 168 WNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNP------NIKVYGIEPSESAVLNGGQPG---KHLIQGIGAGVIPPVL- 237 (273)
Q Consensus 168 ~~q~~~~~d~iv~p~G~Gg~~~Gi~~~~k~~~~------~~~vigVe~~~~~~~~~~~~~---~~~~~glg~~~~~~~~- 237 (273)
++|++..||+||+|+|+||+++|++.+|++..+ .+|||+|||.+++++..+.+. .+..++++.+. |..+
T Consensus 173 ~~q~~~~~d~iv~~vG~GG~~~Gi~~g~~~~~~~~~~~~~~kvigVep~g~~~~~~g~~~~~~~ti~~~l~~~~-~~~~~ 251 (353)
T PRK07409 173 VDALGDAPDYHCIPVGNAGNITAYWKGYKEYHQDGKSTKLPRMMGFQAAGAAPIVRGEPVKNPETIATAIRIGN-PASWD 251 (353)
T ss_pred HHHhCCCCCEEEEeCCChHHHHHHHHHHHHHHHcCCccCCCeEEEEecCCCChHhhCCcCCCCcceeeeeecCC-CCCHH
Confidence 999976799999999999999999999998743 489999999999877655432 34556665542 3222
Q ss_pred -----cccCCCeEEEeCHHHHHHHHHHHHHHcCceecccC
Q 024040 238 -----DVAMLDEVITVSSEEAIETSKLLALKEGLLRQLLY 272 (273)
Q Consensus 238 -----~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~~ps~ 272 (273)
.+++.++++.|+|+|+++++++|++++|+++|||+
T Consensus 252 ~~~~~~~~~~~~~v~Vsd~e~~~a~~~l~~~egi~v~pss 291 (353)
T PRK07409 252 KAVAARDESGGLIDAVTDEEILEAYRLLARKEGVFCEPAS 291 (353)
T ss_pred HHHHHHHHhCCEEEEECHHHHHHHHHHHHHhCCceeCchH
Confidence 23456789999999999999999999999999997
No 48
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=100.00 E-value=9.3e-54 Score=383.83 Aligned_cols=255 Identities=24% Similarity=0.262 Sum_probs=223.2
Q ss_pred HHHhhccCCCcceecccccCCCC-ceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHH
Q 024040 9 KDVTELIGHTPMVYLNNVVDGCV-ARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFI 87 (273)
Q Consensus 9 ~~i~~~~~~TPl~~~~~l~~~~g-~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~ 87 (273)
+++.+.+++|||+++++|++..+ .+||+|+|++|||||||+|++.+++.++.++|. . +||++|+||||+|+|++
T Consensus 14 ~~~~l~~g~TPl~~~~~l~~~~g~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~----~-~vv~~SsGN~g~alA~~ 88 (324)
T cd01563 14 DIVSLGEGNTPLVRAPRLGERLGGKNLYVKDEGLNPTGSFKDRGMTVAVSKAKELGV----K-AVACASTGNTSASLAAY 88 (324)
T ss_pred CcccCCCCCCceeechhhHhhcCCCceEEEecCCCCcccHHHhhHHHHHHHHHHcCC----C-EEEEeCCCHHHHHHHHH
Confidence 56889999999999999988766 799999999999999999999999999998874 3 59999999999999999
Q ss_pred HHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhchHHHH
Q 024040 88 AASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEI 167 (273)
Q Consensus 88 a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei 167 (273)
|+++|++|++|||+++++.|+++|+.+||+|+.++. +++++.+.+++++++. ++|++||+|+.++ .||.+++.||
T Consensus 89 a~~~G~~~~ivvp~~~~~~k~~~l~~~GA~Vi~~~~--~~~~~~~~a~~~~~~~--~~~~~~~~n~~~~-~g~~t~~~Ei 163 (324)
T cd01563 89 AARAGIKCVVFLPAGKALGKLAQALAYGATVLAVEG--NFDDALRLVRELAEEN--WIYLSNSLNPYRL-EGQKTIAFEI 163 (324)
T ss_pred HHHcCCceEEEEeCCCCHHHHHHHHHcCCEEEEECC--cHHHHHHHHHHHHHhc--CeeccCCCCccee-cchhhhHHHH
Confidence 999999999999999999999999999999999985 5788899999998875 7899999999999 5999999999
Q ss_pred HHhhCC-CcCEEEEecCCCccHHHHHHHHHhhC------CCcEEEEEecCCCcccc----CCCC-------CCccccccC
Q 024040 168 WNDSGG-KVDAFIAGIGTGGTVTGAGRFLKEKN------PNIKVYGIEPSESAVLN----GGQP-------GKHLIQGIG 229 (273)
Q Consensus 168 ~~q~~~-~~d~iv~p~G~Gg~~~Gi~~~~k~~~------~~~~vigVe~~~~~~~~----~~~~-------~~~~~~glg 229 (273)
++|+++ .+|+||+|+|+||+++|++.+||+.. ++++||+|||.+++++. .+.. ..+.+++++
T Consensus 164 ~~q~~~~~~d~vv~~vGtGg~~~G~~~~~k~~~~~g~~~~~~~vigve~~~~~~~~~~~~~g~~~~~~~~~~~t~~~gl~ 243 (324)
T cd01563 164 AEQLGWEVPDYVVVPVGNGGNITAIWKGFKELKELGLIDRLPRMVGVQAEGAAPIVRAFKEGKDDIEPVENPETIATAIR 243 (324)
T ss_pred HHHcCCCCCCEEEEecCCcHHHHHHHHHHHHHHhCCccccCCeEEEEecCCCCHHHHHHHcCCCccCcCCCCCceeeeee
Confidence 999964 69999999999999999999999875 57999999999987553 2211 244567776
Q ss_pred CCCCc---c--cccccCCCeEEEeCHHHHHHHHHHHHHHcCceecccCC
Q 024040 230 AGVIP---P--VLDVAMLDEVITVSSEEAIETSKLLALKEGLLRQLLYE 273 (273)
Q Consensus 230 ~~~~~---~--~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~~ps~~ 273 (273)
.+..+ . .+..++.|+++.|+|+|+++++++|+++||+++|||+.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~pssa 292 (324)
T cd01563 244 IGNPASGPKALRAVRESGGTAVAVSDEEILEAQKLLARTEGIFVEPASA 292 (324)
T ss_pred cCCCCCHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhcCCceeCchHH
Confidence 65321 1 12346778999999999999999999999999999973
No 49
>PRK06381 threonine synthase; Validated
Probab=100.00 E-value=1.6e-53 Score=381.40 Aligned_cols=256 Identities=21% Similarity=0.275 Sum_probs=216.8
Q ss_pred HHHhhccCCCcceecccccCCCC-ceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHH
Q 024040 9 KDVTELIGHTPMVYLNNVVDGCV-ARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFI 87 (273)
Q Consensus 9 ~~i~~~~~~TPl~~~~~l~~~~g-~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~ 87 (273)
..-...+++|||+++++|++.+| .+||+|+|++|||||||+|++.+++.+++++|. ++||++|+||||+|+|++
T Consensus 7 ~~~~~~~g~TPL~~~~~l~~~~G~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~-----~~lv~aSsGN~g~alA~~ 81 (319)
T PRK06381 7 SSEEKPPGGTPLLRARKLEEELGLRKIYLKFEGANPTGTQKDRIAEAHVRRAMRLGY-----SGITVGTCGNYGASIAYF 81 (319)
T ss_pred ccccccCCCCceeEhHhhHHhcCCceEEEEecCCCCccCcHHHHHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHHH
Confidence 34456799999999999998888 699999999999999999999999999999885 459999999999999999
Q ss_pred HHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCC-CC-cchHhhhhchHH
Q 024040 88 AASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFE-NP-ANPEIHYETTGP 165 (273)
Q Consensus 88 a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~-~~~~~g~~t~~~ 165 (273)
|+++|++|+||||..++..|+++|+.+||+|+.+++ +++++.+.+++++++. ++|++++++ || .++ .||.|+++
T Consensus 82 aa~~G~~~~ivvp~~~~~~~~~~l~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~~~~~n~~~~~-~G~~t~a~ 157 (319)
T PRK06381 82 ARLYGLKAVIFIPRSYSNSRVKEMEKYGAEIIYVDG--KYEEAVERSRKFAKEN-GIYDANPGSVNSVVDI-EAYSAIAY 157 (319)
T ss_pred HHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEcCC--CHHHHHHHHHHHHHHc-CcEecCCCCCCcchHh-hhHHHHHH
Confidence 999999999999999999999999999999999986 4788889999988875 788888886 76 456 69999999
Q ss_pred HHHHhhCCCcCEEEEecCCCccHHHHHHHHHhh------CCCcEEEEEecCCCcccc----CCCCC------Ccccc-cc
Q 024040 166 EIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEK------NPNIKVYGIEPSESAVLN----GGQPG------KHLIQ-GI 228 (273)
Q Consensus 166 Ei~~q~~~~~d~iv~p~G~Gg~~~Gi~~~~k~~------~~~~~vigVe~~~~~~~~----~~~~~------~~~~~-gl 228 (273)
||++|++..||+||+|+|+||+++|++++|+++ .+.+||++|||.+++++. .+... .+..+ .+
T Consensus 158 Ei~~ql~~~~D~vv~~vGtGgt~~Gl~~~~~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~ 237 (319)
T PRK06381 158 EIYEALGDVPDAVAVPVGNGTTLAGIYHGFRRLYDRGKTSRMPRMIGVSTSGGNQIVESFKRGSSEVVDLEVDEIRETAV 237 (319)
T ss_pred HHHHHhCCCCCEEEEcCCccHHHHHHHHHHHHHHhCCCcCCCCEEEEEeeCCCCHHHHHHHcCCCcccCCCcchhhhccc
Confidence 999999767999999999999999999999998 789999999999986543 22211 11111 11
Q ss_pred CCCCC---------cccccccCCCeEEEeCHHHHHHHHHHHHHHcCceecccCC
Q 024040 229 GAGVI---------PPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLRQLLYE 273 (273)
Q Consensus 229 g~~~~---------~~~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~~ps~~ 273 (273)
+.+.. ...+..++.++++.|+|+|+++++++|+++|||++||+|.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~d~e~~~a~~~la~~egi~~epssa 291 (319)
T PRK06381 238 NEPLVSYRSFDGDNALEAIYDSHGYAFGFSDDEMVKYAELLRRMEGLNALPASA 291 (319)
T ss_pred CCCcccccCCCHHHHHHHHHHcCCEEEEECHHHHHHHHHHHHHhCCcccCchHH
Confidence 11110 0112456777999999999999999999999999999973
No 50
>KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism]
Probab=100.00 E-value=5.4e-54 Score=354.43 Aligned_cols=261 Identities=22% Similarity=0.314 Sum_probs=234.2
Q ss_pred chhhhhHHHhhccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHH
Q 024040 3 DKCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGI 82 (273)
Q Consensus 3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~ 82 (273)
+...+++|+.+++.+||++.++.+.+..|.+||+|+|++|.+||||.|||.+.+..+.++.. .++|++.||||||.
T Consensus 11 dv~~A~~rik~~ihkTpVlTS~~ln~~~g~~vfFKcE~fQKtGaFKfRGAlNav~~l~~ek~----~kgvithSSGNHaq 86 (323)
T KOG1251|consen 11 DVRAAHQRIKPFIHKTPVLTSENLNEKVGRHVFFKCENFQKTGAFKFRGALNAVSSLKAEKR----AKGVITHSSGNHAQ 86 (323)
T ss_pred HHHHHHHHHHhhhccCceechhhHHHHhhhheEeehhhhhhccceehhhhHHHHHHhhHhhh----cCceEeecCCcHHH
Confidence 45678999999999999999999999999999999999999999999999999998874433 34599999999999
Q ss_pred HHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhc
Q 024040 83 GLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYET 162 (273)
Q Consensus 83 a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t 162 (273)
|+|++|+..|+|++||||.++|..|+..++.|||+|+++++. .+++.+.++++.++. +.+.++||++|..+ +|++|
T Consensus 87 AlalaAk~~giPa~IVvP~~AP~~Kv~a~~~Yga~ii~~e~~--~~sRE~va~~ltee~-g~~~i~Py~~p~vI-aGqgT 162 (323)
T KOG1251|consen 87 ALALAAKILGIPATIVVPKDAPICKVAATRGYGANIIFCEPT--VESRESVAKDLTEET-GYYLIHPYNHPSVI-AGQGT 162 (323)
T ss_pred HHHHHHHhcCCCeEEEecCCChHHHHHHHHhcCceEEEecCc--cchHHHHHHHHHHhc-CcEEeCCCCCccee-eccch
Confidence 999999999999999999999999999999999999999864 567888999999887 78999999999998 79999
Q ss_pred hHHHHHHhhCCCcCEEEEecCCCccHHHHHHHHHhhCCCcEEEEEecCCCccc----cCCCC-----CCccccccCCC--
Q 024040 163 TGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVL----NGGQP-----GKHLIQGIGAG-- 231 (273)
Q Consensus 163 ~~~Ei~~q~~~~~d~iv~p~G~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~----~~~~~-----~~~~~~glg~~-- 231 (273)
++.|++||+ +.+|++|+|+|+||+++|++.+.+.+.|+++|++|||++.+.- ..+.. ..++++|....
T Consensus 163 iA~ElleqV-g~iDalfvpvgGGGllSgvAlaa~~l~P~i~vy~veP~~a~d~~qsf~~g~I~~l~tp~TIADG~r~~~l 241 (323)
T KOG1251|consen 163 IALELLEQV-GEIDALFVPVGGGGLLSGVALAAKSLKPSIEVYAVEPEAADDGQQSFLKGKIVHLDTPKTIADGVRTSHL 241 (323)
T ss_pred HHHHHHHhh-CccceEEEeecCcchhhHHHHHHhccCCCcEEEEecCcccchHHHHHhcCCeEecCCchhhhhhhhhccc
Confidence 999999999 4899999999999999999999999999999999999887632 23332 34567776553
Q ss_pred -CCcccccccCCCeEEEeCHHHHHHHHHHHHHHcCceecccC
Q 024040 232 -VIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLRQLLY 272 (273)
Q Consensus 232 -~~~~~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~~ps~ 272 (273)
..+|.+.++++|++++|+|+|+.++++.++.+-.+.+||+.
T Consensus 242 G~~t~pIir~~vddi~Tv~e~Ei~~~lk~~~ermK~~vEPTa 283 (323)
T KOG1251|consen 242 GPLTWPIIRDLVDDILTVSEDEIKEALKLIWERMKVVVEPTA 283 (323)
T ss_pred cccchHHHHHHhhhheeecHHHHHHHHHHHHHHHheeeccch
Confidence 35778889999999999999999999999999999999974
No 51
>PRK06450 threonine synthase; Validated
Probab=100.00 E-value=5.8e-53 Score=378.65 Aligned_cols=239 Identities=24% Similarity=0.240 Sum_probs=203.5
Q ss_pred HHhhccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHH
Q 024040 10 DVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAA 89 (273)
Q Consensus 10 ~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~ 89 (273)
.+++++|+|||++.+ +||+|+|++|||||||||++.++++++.+.|. ++|+++|+||+|.|+|++|+
T Consensus 51 ~vslgeG~TPLv~~~--------~l~~K~E~~nPTGSfKDRga~~~i~~a~~~g~-----~~vv~aSsGN~g~slA~~aa 117 (338)
T PRK06450 51 FISLGEGRTPLIKKG--------NIWFKLDFLNPTGSYKDRGSVTLISYLAEKGI-----KQISEDSSGNAGASIAAYGA 117 (338)
T ss_pred CCCCCCCCCCceecC--------CEEEEecCCCCcCCCHHHHHHHHHHHHHHcCC-----CEEEEECCcHHHHHHHHHHH
Confidence 478899999999964 69999999999999999999999999999874 35999999999999999999
Q ss_pred HcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhchHHHHHH
Q 024040 90 SRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWN 169 (273)
Q Consensus 90 ~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ 169 (273)
++|++|+||||+++++.|+++|+.|||+|+.++++ ++++.+. +++. +.+|+++++||.++ +||+|+++||++
T Consensus 118 ~~G~~~~i~vP~~~~~~k~~~i~~~GA~vi~v~~~--~~~~~~~----a~~~-g~~~~~~~~np~~i-eG~kTia~EI~e 189 (338)
T PRK06450 118 AAGIEVKIFVPETASGGKLKQIESYGAEVVRVRGS--REDVAKA----AENS-GYYYASHVLQPQFR-DGIRTLAYEIAK 189 (338)
T ss_pred HcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCC--HHHHHHH----HHhc-CeEeccCCCCccHH-HHHHHHHHHHHH
Confidence 99999999999999999999999999999999853 6655443 4443 67899999999998 599999999999
Q ss_pred hhCC-CcCEEEEecCCCccHHHHHHHHHhhCC------CcEEEEEecCCCcccc----CCCC-----CCccccccCCCCC
Q 024040 170 DSGG-KVDAFIAGIGTGGTVTGAGRFLKEKNP------NIKVYGIEPSESAVLN----GGQP-----GKHLIQGIGAGVI 233 (273)
Q Consensus 170 q~~~-~~d~iv~p~G~Gg~~~Gi~~~~k~~~~------~~~vigVe~~~~~~~~----~~~~-----~~~~~~glg~~~~ 233 (273)
|+++ .||+||+|+|+||+++|++++|+++.+ .+|||+|||++++++. ...+ ..+.+++|..+.
T Consensus 190 ql~~~~pD~vvvpvG~Ggll~Gi~~g~~el~~~G~i~~~prii~Vq~~g~~p~~~a~~~~~~~~~~~~~tia~~l~~~~- 268 (338)
T PRK06450 190 DLDWKIPNYVFIPVSAGTLLLGVYSGFKHLLDSGVISEMPKIVAVQTEQVSPLCAKFKGISYTPPDKVTSIADALVSTR- 268 (338)
T ss_pred HcCCCCCCEEEEECCchHHHHHHHHHHHHHHhcCCccCCCeEEEEeeCCCCHHHHHhcCCCCCCCCCCCcceeeeecCC-
Confidence 9974 599999999999999999999998864 3899999999988764 2211 234556665443
Q ss_pred cccc------cccCCCeEEEeCHHHHHHHHHHHHHHcCceecccC
Q 024040 234 PPVL------DVAMLDEVITVSSEEAIETSKLLALKEGLLRQLLY 272 (273)
Q Consensus 234 ~~~~------~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~~ps~ 272 (273)
|... .++. +.++.|+|+|+++++++|++ +|+++||||
T Consensus 269 p~~~~~~~~~i~~~-g~~v~V~d~ei~~a~~~La~-~Gi~vepss 311 (338)
T PRK06450 269 PFLLDYMVKALSEY-GECIVVSDNEIVEAWKELAK-KGLLVEYSS 311 (338)
T ss_pred CCCHHHHHHHHHhc-CcEEEECHHHHHHHHHHHHH-cCCEEChhH
Confidence 3222 2344 79999999999999999987 699999997
No 52
>PRK08329 threonine synthase; Validated
Probab=100.00 E-value=9.4e-53 Score=379.65 Aligned_cols=244 Identities=23% Similarity=0.237 Sum_probs=215.1
Q ss_pred HhhccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHH
Q 024040 11 VTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAAS 90 (273)
Q Consensus 11 i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~ 90 (273)
+++++|.|||+++. .+||+|+|++|||||||||++.+++.++.+.|. .+||++|+||||+|+|++|++
T Consensus 58 ~sl~eg~Tpl~~~~-------~~l~~K~E~~nPtGSfKdRga~~~i~~a~~~g~-----~~vv~aSsGN~g~alA~~aa~ 125 (347)
T PRK08329 58 PHLTPPITPTVKRS-------IKVYFKLDYLQPTGSFKDRGTYVTVAKLKEEGI-----NEVVIDSSGNAALSLALYSLS 125 (347)
T ss_pred CcCCCCCCccccCC-------CeEEEEeCCCCCCcCCHHHHHHHHHHHHHHcCC-----CEEEEECCCcHHHHHHHHHHH
Confidence 67889999999973 489999999999999999999999999999885 359999999999999999999
Q ss_pred cCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhchHHHHHHh
Q 024040 91 RGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWND 170 (273)
Q Consensus 91 ~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q 170 (273)
+|++|+||||+++++.|+.+++.|||+|+.++++ ++++.+.+++++++. +.+|++++.||.++ .||+|+++||++|
T Consensus 126 ~G~~~~v~vp~~~~~~k~~~~~~~GA~v~~v~~~--~~~~~~~a~~l~~~~-~~~~~~~~~np~~~-eG~~t~~~Ei~eq 201 (347)
T PRK08329 126 EGIKVHVFVSYNASKEKISLLSRLGAELHFVEGD--RMEVHEEAVKFSKRN-NIPYVSHWLNPYFL-EGTKTIAYEIYEQ 201 (347)
T ss_pred cCCcEEEEECCCChHHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHhc-CCeeccCCCCchhh-ccchhHHHHHHHH
Confidence 9999999999999999999999999999999864 677888888888775 67888999999998 5999999999999
Q ss_pred hCCCcCEEEEecCCCccHHHHHHHHHhhC------CCcEEEEEecCCCccccC-CCCCCccccccCCCCCcc-----ccc
Q 024040 171 SGGKVDAFIAGIGTGGTVTGAGRFLKEKN------PNIKVYGIEPSESAVLNG-GQPGKHLIQGIGAGVIPP-----VLD 238 (273)
Q Consensus 171 ~~~~~d~iv~p~G~Gg~~~Gi~~~~k~~~------~~~~vigVe~~~~~~~~~-~~~~~~~~~glg~~~~~~-----~~~ 238 (273)
++ .||+||+|+|+||+++|++++|+++. +.+|||+|||++++++.. .....+.+++++.+..+. .+.
T Consensus 202 l~-~pD~vvvpvG~Gg~l~Gi~~g~kel~~~g~i~~~p~ii~Vq~~g~~~~~~~~~~~~t~a~gi~i~~~~~~~~~~~~l 280 (347)
T PRK08329 202 IG-VPDYAFVPVGSGTLFLGIWKGFKELHEMGEISKMPKLVAVQAEGYESLCKRSKSENKLADGIAIPEPPRKEEMLRAL 280 (347)
T ss_pred cC-CCCEEEEeCCcHHHHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCchHHhccCCCCceeeeEEeCCCCCHHHHHHHH
Confidence 96 79999999999999999999999874 568999999999877653 233566788888765432 234
Q ss_pred ccCCCeEEEeCHHHHHHHHHHHHHHcCceecccC
Q 024040 239 VAMLDEVITVSSEEAIETSKLLALKEGLLRQLLY 272 (273)
Q Consensus 239 ~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~~ps~ 272 (273)
+++.+.++.|+|+|+++|+++|++ +||++||||
T Consensus 281 ~~~~g~~~~V~d~e~~~a~~~l~~-~Gi~vepss 313 (347)
T PRK08329 281 EESNGFCISVGEEETRAALHWLRR-MGFLVEPTS 313 (347)
T ss_pred HHhCCEEEEECHHHHHHHHHHHHh-cCceECccH
Confidence 567788999999999999999986 799999997
No 53
>PRK06260 threonine synthase; Validated
Probab=100.00 E-value=5.8e-53 Score=387.54 Aligned_cols=253 Identities=25% Similarity=0.254 Sum_probs=219.5
Q ss_pred HHHhhccCCCcceecccccCCCCc-eEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHH
Q 024040 9 KDVTELIGHTPMVYLNNVVDGCVA-RIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFI 87 (273)
Q Consensus 9 ~~i~~~~~~TPl~~~~~l~~~~g~-~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~ 87 (273)
+.+++.+|+|||+++++|++.+|. +||+|+|++|||||||||++.+++.++.+.|. .+||++|+||||+|+|++
T Consensus 59 ~~v~l~~G~TPLv~~~~l~~~~g~~~l~~K~E~~nPTGSfKdRga~~~v~~a~~~g~-----~~vv~aSsGN~g~alA~~ 133 (397)
T PRK06260 59 KIVSLNEGGTPLYRCPNLEKELGVKELYVKHEGANPTGSFKDRGMTVGVTKALELGV-----KTVACASTGNTSASLAAY 133 (397)
T ss_pred CcccCCCCCCCeEEchhhHHHhCCCcEEEEeCCCCCCcCcHHHHHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHHH
Confidence 357889999999999999988886 99999999999999999999999999999885 359999999999999999
Q ss_pred HHHcCCeEEEEecCC-CCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhchHHH
Q 024040 88 AASRGYKLIIIMPST-YSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPE 166 (273)
Q Consensus 88 a~~~g~~~~i~~p~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~E 166 (273)
|+++|++|+||||++ +++.|+.+++.+||+|+.+++ +++++.+.+++++++. ++|+++++ ||.++ .||+|+++|
T Consensus 134 aa~~G~~~~i~vP~~~~~~~k~~~~~~~GA~vi~v~~--~~~~~~~~a~~~~~~~-g~y~~~~~-np~~~-~G~~t~a~E 208 (397)
T PRK06260 134 AARAGLKCYVLLPAGKVALGKLAQALLHGAKVLEVDG--NFDDALDMVVELAKEG-KIYLLNSI-NPFRL-EGQKTIGFE 208 (397)
T ss_pred HHHcCCcEEEEEeCCCccHHHHHHHHhcCCEEEEECC--cHHHHHHHHHHHHhhC-CEEeecCC-Cchhh-cchhhHHHH
Confidence 999999999999987 789999999999999999985 4889999999998876 78888887 89988 599999999
Q ss_pred HHHhhCC-CcCEEEEecCCCccHHHHHHHHHhhC------CCcEEEEEecCCCcccc----CCCC-------CCcccccc
Q 024040 167 IWNDSGG-KVDAFIAGIGTGGTVTGAGRFLKEKN------PNIKVYGIEPSESAVLN----GGQP-------GKHLIQGI 228 (273)
Q Consensus 167 i~~q~~~-~~d~iv~p~G~Gg~~~Gi~~~~k~~~------~~~~vigVe~~~~~~~~----~~~~-------~~~~~~gl 228 (273)
|++|+++ .||+||+|+|+||+++|++++|+++. +.+|||+|||++++++. .+.. ..+.++++
T Consensus 209 i~eQl~~~~pd~vvvpvG~Gg~~~Gi~~~~~~l~~~G~i~~~prii~Vq~~g~~~~~~a~~~g~~~~~~~~~~~tia~~i 288 (397)
T PRK06260 209 IADQLGWEVPDRVVLPVGNAGNISAIWKGFKELVELGIIDKLPKMTGIQAEGAAPIVEAIKKGKDEIEPVENPETVATAI 288 (397)
T ss_pred HHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHhcCCcCCCCeEEEEecCCCcHHHHHHHcCCCcccccCCCCceeeee
Confidence 9999976 69999999999999999999999876 34799999999998653 2221 23344555
Q ss_pred CCCCCcc------cccccCCCeEEEeCHHHHHHHHHHHHHHcCceecccC
Q 024040 229 GAGVIPP------VLDVAMLDEVITVSSEEAIETSKLLALKEGLLRQLLY 272 (273)
Q Consensus 229 g~~~~~~------~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~~ps~ 272 (273)
..+. |. ...++..+.++.|+|+|+++++++|++++|+++|||+
T Consensus 289 ~i~~-p~~~~~~~~~l~~~~g~~v~V~d~e~~~a~~~la~~eGi~vepss 337 (397)
T PRK06260 289 RIGN-PVNAPKALRAIRESGGTAEAVSDEEILDAQKLLARKEGIGVEPAS 337 (397)
T ss_pred EeCC-CCCHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHhCCCeeCchH
Confidence 4432 21 1234566889999999999999999999999999997
No 54
>PRK08206 diaminopropionate ammonia-lyase; Provisional
Probab=100.00 E-value=9.7e-53 Score=385.24 Aligned_cols=264 Identities=21% Similarity=0.202 Sum_probs=222.6
Q ss_pred hhhhHHH--hhccCCCcceecccccCCCC-ceEEEEeCCC-CCCCchhhHHHHHHHHHHHH--cCC-C------------
Q 024040 5 CEIKKDV--TELIGHTPMVYLNNVVDGCV-ARIAAKLEMM-QPCSSVKDRIAYSMIKDAED--KGL-I------------ 65 (273)
Q Consensus 5 ~~~~~~i--~~~~~~TPl~~~~~l~~~~g-~~l~~K~E~~-~ptGS~K~R~a~~~~~~a~~--~g~-~------------ 65 (273)
..+..++ .+..++|||+++++|++.+| .+||+|+|++ |||||||+||+.+.+.++.. .+. .
T Consensus 30 ~~a~~~~~~~~~~~~TPL~~~~~l~~~~G~~~v~~K~E~~q~ptgSFK~RG~~~~i~~~~~~~~~~~~~~~~~~~l~~~~ 109 (399)
T PRK08206 30 KKARAFHQSFPGYAPTPLVALPDLAAELGVGSILVKDESYRFGLNAFKALGGAYAVARLLAEKLGLDISELSFEELTSGE 109 (399)
T ss_pred HHHHHHHhcCCCCCCCCCcchHHHHHHhCCCcEEEecccCcCCCCChHHhhHHHHHHHHHHHHhCCCcccCCHHHhhhhH
Confidence 4566778 56999999999999999889 5999999998 59999999999999888763 221 0
Q ss_pred ----CCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhC
Q 024040 66 ----TPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRT 141 (273)
Q Consensus 66 ----~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~ 141 (273)
.++ .+|+++|+||||+|+|++|+++|++|+||||+++++.|+..|+.+||+|+.+++ +++++++.+++++++.
T Consensus 110 ~~~~~~~-~~vv~aSsGN~g~alA~~a~~~G~~~~Ivvp~~~~~~k~~~i~~~GA~Vi~v~~--~~~~~~~~a~~~~~~~ 186 (399)
T PRK08206 110 VREKLGD-ITFATATDGNHGRGVAWAAQQLGQKAVIYMPKGSSEERVDAIRALGAECIITDG--NYDDSVRLAAQEAQEN 186 (399)
T ss_pred HHHhccC-CEEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHHHc
Confidence 012 249999999999999999999999999999999999999999999999999995 5889999999998876
Q ss_pred CCeEeeC-----CCCC-CcchHhhhhchHHHHHHhhCC---CcCEEEEecCCCccHHHHHHHHHhhC--CCcEEEEEecC
Q 024040 142 PNGYILG-----QFEN-PANPEIHYETTGPEIWNDSGG---KVDAFIAGIGTGGTVTGAGRFLKEKN--PNIKVYGIEPS 210 (273)
Q Consensus 142 ~~~~~~~-----~~~~-~~~~~~g~~t~~~Ei~~q~~~---~~d~iv~p~G~Gg~~~Gi~~~~k~~~--~~~~vigVe~~ 210 (273)
+++|++ ||+| |.++.+||.|+++||++|+++ .||+||+|+|+||+++|++.++++++ +.+|||+|||+
T Consensus 187 -g~~~v~~~~~~~~~~~~~~~~~G~~t~a~EI~eQl~~~~~~pD~vvvpvG~GG~~aGi~~~~k~~~~~~~~kii~Vep~ 265 (399)
T PRK08206 187 -GWVVVQDTAWEGYEEIPTWIMQGYGTMADEAVEQLKEMGVPPTHVFLQAGVGSLAGAVLGYFAEVYGEQRPHFVVVEPD 265 (399)
T ss_pred -CCEEecCccccCcccccHHHHHHhHHHHHHHHHHHHhcCCCCCEEEEcCCccHHHHHHHHHHHHHcCCCCCEEEEECCC
Confidence 778886 6765 555558999999999999965 59999999999999999999999884 47999999999
Q ss_pred CCcccc----CCCC------CCccccccCCCCC---cccccccCCCeEEEeCHHHHHHHHHHHHH----HcCceecccC
Q 024040 211 ESAVLN----GGQP------GKHLIQGIGAGVI---PPVLDVAMLDEVITVSSEEAIETSKLLAL----KEGLLRQLLY 272 (273)
Q Consensus 211 ~~~~~~----~~~~------~~~~~~glg~~~~---~~~~~~~~~d~~v~v~d~e~~~a~~~l~~----~eGi~~~ps~ 272 (273)
+++++. .+++ ..+.+++++++.. ++.+.++.+|+++.|+|+|+++++++|++ ++|+++|||+
T Consensus 266 gs~~l~~s~~~g~~~~~~~~~~tia~gl~~~~~~~~~~~~~~~~~d~~v~VsD~ei~~a~r~La~~~~~~~gi~vepsg 344 (399)
T PRK08206 266 QADCLYQSAVDGKPVAVTGDMDTIMAGLACGEPNPLAWEILRNCADAFISCPDEVAALGMRILANPLGGDPPIVSGESG 344 (399)
T ss_pred CCchHHHHHHcCCcEEeCCCCCceeccCCCCCcCHHHHHHHHHhCCEEEEECHHHHHHHHHHHhcccCCCCCeeecchH
Confidence 998763 3332 1346677765532 33456788999999999999999999996 7899999997
No 55
>PLN02569 threonine synthase
Probab=100.00 E-value=7.8e-52 Score=385.17 Aligned_cols=257 Identities=17% Similarity=0.123 Sum_probs=220.0
Q ss_pred HHhhccCCCcceecccccCC-CC-ceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHH
Q 024040 10 DVTELIGHTPMVYLNNVVDG-CV-ARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFI 87 (273)
Q Consensus 10 ~i~~~~~~TPl~~~~~l~~~-~g-~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~ 87 (273)
.+++++|+|||+++++|++. +| .+||+|+|++|||||||||++.+++..+.+.|........|+++|+||||.|+|++
T Consensus 126 ~vsl~eG~TPLv~~~~l~~~~~G~~~l~~K~E~~nPTGSFKDRga~~~vs~a~~~g~~~~~~~~Vv~ASSGN~GaAlAay 205 (484)
T PLN02569 126 IVSLFEGNSNLFWAERLGKEFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMAKPVVGVGCASTGDTSAALSAY 205 (484)
T ss_pred ceecCCCCCceeEhhhhhHhhcCCccEEEEECCCCCCcCHHHHHHHHHHHHHHHhhhccCCccEEEEeCCcHHHHHHHHH
Confidence 37889999999999999887 78 49999999999999999999999999998876422112359999999999999999
Q ss_pred HHHcCCeEEEEecCC-CCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhchHHH
Q 024040 88 AASRGYKLIIIMPST-YSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPE 166 (273)
Q Consensus 88 a~~~g~~~~i~~p~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~E 166 (273)
|+++|++|+||||++ ++..|+.+|+.|||+|+.+++ +|+++++.+++++++. ++++++++ ||.++ +||+|+++|
T Consensus 206 aa~~Gl~~~I~vP~~~~~~~k~~qi~a~GA~Vi~v~g--~~d~a~~~a~e~~~~~-~~~~~n~~-Np~~i-eG~kT~a~E 280 (484)
T PLN02569 206 CAAAGIPSIVFLPADKISIAQLVQPIANGALVLSIDT--DFDGCMRLIREVTAEL-PIYLANSL-NSLRL-EGQKTAAIE 280 (484)
T ss_pred HHhcCCeEEEEEcCCCCCHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHHc-CCEecCCC-Ccchh-HhHHHHHHH
Confidence 999999999999996 788999999999999999995 5899999999988876 68889988 99998 599999999
Q ss_pred HHHhhCCC-cCEEEEecCCCccHHHHHHHHHhhC------CCcEEEEEecCCCcccc----CCC-------CCCcccccc
Q 024040 167 IWNDSGGK-VDAFIAGIGTGGTVTGAGRFLKEKN------PNIKVYGIEPSESAVLN----GGQ-------PGKHLIQGI 228 (273)
Q Consensus 167 i~~q~~~~-~d~iv~p~G~Gg~~~Gi~~~~k~~~------~~~~vigVe~~~~~~~~----~~~-------~~~~~~~gl 228 (273)
|++|++++ ||+||+|+|+||+++|++++||++. +.+|||+||+++++++. .+. ..++.++++
T Consensus 281 I~eQl~~~~pD~VvvPvG~Gg~l~Gi~kgfkel~~~G~i~~~Priv~Vqa~g~~pl~~a~~~G~~~~~~~~~~~T~A~gi 360 (484)
T PLN02569 281 ILQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCKELGLVDRLPRLVCAQAANANPLYRAYKSGWEEFKPVKANPTFASAI 360 (484)
T ss_pred HHHHcCCCCCCEEEEeCCchHHHHHHHHHHHHHHHcCCCCCCCeEEEEeeCCCcHHHHHHHcCCCccccCCCCCccchhh
Confidence 99999765 9999999999999999999999874 45799999999998764 232 135667777
Q ss_pred CCCCCcccc------cccCCCeEEEeCHHHHHHHHHHHHHHcCceecccCC
Q 024040 229 GAGVIPPVL------DVAMLDEVITVSSEEAIETSKLLALKEGLLRQLLYE 273 (273)
Q Consensus 229 g~~~~~~~~------~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~~ps~~ 273 (273)
+.+. |.++ .++.-+.++.|+|+|+++++++ ++++|+++||||.
T Consensus 361 ~i~~-P~~~~~~l~al~~s~g~~v~VsDeEi~~a~~~-a~~~Gi~vepssA 409 (484)
T PLN02569 361 QIGD-PVSIDRAVYALKESNGIVEEATEEELMDAQAE-ADKTGMFLCPHTG 409 (484)
T ss_pred ccCC-CccHHHHHHHHHHhCCEEEEECHHHHHHHHHH-HHHCCcEECchHH
Confidence 7663 4332 1233456799999999999999 8999999999973
No 56
>PRK05638 threonine synthase; Validated
Probab=100.00 E-value=3.4e-51 Score=380.46 Aligned_cols=250 Identities=19% Similarity=0.196 Sum_probs=212.6
Q ss_pred HHhhccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHH
Q 024040 10 DVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAA 89 (273)
Q Consensus 10 ~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~ 89 (273)
.+++++|+|||++++ +++.+|.+||+|+|++|||||||||++.+++.+|++.|. ++||++|+||||+|+|++|+
T Consensus 59 ~v~l~~G~TPLv~~~-~~~~~g~~l~~K~E~~nPtGSfKdR~a~~~i~~a~~~g~-----~~vv~aSsGN~g~alA~~aa 132 (442)
T PRK05638 59 IISLGEGGTPLIRAR-ISEKLGENVYIKDETRNPTGSFRDRLATVAVSYGLPYAA-----NGFIVASDGNAAASVAAYSA 132 (442)
T ss_pred ccccCCCCCcEEccc-chHHhCCeEEEEeCCCCCCCChHHHHHHHHHHHHHHcCC-----CEEEEeCCChHHHHHHHHHH
Confidence 367899999999984 666678899999999999999999999999999998874 45999999999999999999
Q ss_pred HcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhchHHHHHH
Q 024040 90 SRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWN 169 (273)
Q Consensus 90 ~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ 169 (273)
++|++|+||||+++++.|+.+|+.|||+|+.+++ +++++.+.+++++++. ++|++++++||.++ .||+|+++||++
T Consensus 133 ~~G~~~~i~vp~~~~~~k~~~~~~~GA~vi~v~~--~~~~~~~~a~~~~~~~-~~~~~~~~~np~~~-eG~~t~a~Ei~e 208 (442)
T PRK05638 133 RAGKEAFVVVPRKVDKGKLIQMIAFGAKIIRYGE--SVDEAIEYAEELARLN-GLYNVTPEYNIIGL-EGQKTIAFELWE 208 (442)
T ss_pred HcCCCEEEEEeCCCCHHHHHHHHhcCcEEEEECC--CHHHHHHHHHHHHHhC-CeEecCCCCChhHh-hhHHHHHHHHHH
Confidence 9999999999999999999999999999999985 5889999999988775 79999999999999 599999999999
Q ss_pred hhCCCcCEEEEecCCCccHHHHHHHHHhhCC------CcEEEEEecCCCcccc----CCC--CCCccccccCCCCCc--c
Q 024040 170 DSGGKVDAFIAGIGTGGTVTGAGRFLKEKNP------NIKVYGIEPSESAVLN----GGQ--PGKHLIQGIGAGVIP--P 235 (273)
Q Consensus 170 q~~~~~d~iv~p~G~Gg~~~Gi~~~~k~~~~------~~~vigVe~~~~~~~~----~~~--~~~~~~~glg~~~~~--~ 235 (273)
|++ ||+||+|+|+||+++|++++|+++.+ .+|||+|||++++++. .+. ...+.+.++..+... .
T Consensus 209 q~~--pD~vv~pvG~Gg~~~Gi~~gfkel~~~g~i~~~prii~Vq~~~~~p~~~~~~~~~~~~~~t~a~gl~~~~p~~~~ 286 (442)
T PRK05638 209 EIN--PTHVIVPTGSGSYLYSIYKGFKELLEIGVIEEIPKLIAVQTERCNPIASEILGNKTKCNETKALGLYVKNPVMKE 286 (442)
T ss_pred HHC--cCEEEEeCCchHHHHHHHHHHHHHHhCCcccCCCeEEEEecCCCCHHHHHHhcCCCCCCCceeeeEeeCCCCCHH
Confidence 995 99999999999999999999999865 3799999999988754 222 123344555433211 1
Q ss_pred ---cccccCCCeEEEeCHHHHHHHHHHHHHHcCceecccC
Q 024040 236 ---VLDVAMLDEVITVSSEEAIETSKLLALKEGLLRQLLY 272 (273)
Q Consensus 236 ---~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~~ps~ 272 (273)
...++..+.++.|+|+++.++++.++ ++||++||||
T Consensus 287 ~~~~~i~~~~g~~~~v~d~~i~~a~~~l~-~eGi~~epss 325 (442)
T PRK05638 287 YVSEAIKESGGTAVVVNEEEIMAGEKLLA-KEGIFAELSS 325 (442)
T ss_pred HHHHHHHHhCCEEEEECHHHHHHHHHHHH-hcCceecchH
Confidence 12344567788899888888887776 5799999997
No 57
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=100.00 E-value=3.3e-50 Score=347.19 Aligned_cols=216 Identities=45% Similarity=0.625 Sum_probs=203.0
Q ss_pred CcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEE
Q 024040 18 TPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLII 97 (273)
Q Consensus 18 TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i 97 (273)
|||++++++++..+.+||+|+|++|||||||||++.+++..+.+.|.+ |+. .||++|+||||.|+|++|+++|++|++
T Consensus 1 TPl~~~~~l~~~~~~~l~~K~e~~~ptgS~K~R~a~~~l~~a~~~g~~-~~~-~vv~~ssGN~g~alA~~a~~~g~~~~v 78 (244)
T cd00640 1 TPLVRLKRLSKLGGANIYLKLEFLNPTGSFKDRGALNLILLAEEEGKL-PKG-VIIESTGGNTGIALAAAAARLGLKCTI 78 (244)
T ss_pred CCeeEccccccccCCEEEEEecccCCcCCcHHHHHHHHHHHHHHcCCC-CCC-EEEEeCCcHHHHHHHHHHHHcCCCEEE
Confidence 899999999987778999999999999999999999999999998865 444 499999999999999999999999999
Q ss_pred EecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhchHHHHHHhhCC-CcC
Q 024040 98 IMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGG-KVD 176 (273)
Q Consensus 98 ~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~-~~d 176 (273)
|+|+..++.|+++|+.+||+|+.++++ ++++.+.+++++++.++++|+++|.|+.++ .||.++++||++|++. .||
T Consensus 79 ~~p~~~~~~~~~~~~~~Ga~v~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~-~g~~~~~~Ei~~q~~~~~~d 155 (244)
T cd00640 79 VMPEGASPEKVAQMRALGAEVVLVPGD--FDDAIALAKELAEEDPGAYYVNQFDNPANI-AGQGTIGLEILEQLGGQKPD 155 (244)
T ss_pred EECCCCCHHHHHHHHHCCCEEEEECCC--HHHHHHHHHHHHHhCCCCEecCCCCCHHHH-HHHHHHHHHHHHHcCCCCCC
Confidence 999999999999999999999999964 789999999999885589999999999999 4899999999999976 599
Q ss_pred EEEEecCCCccHHHHHHHHHhhCCCcEEEEEecCCCccccCCCCCCccccccCCCCCcccccccCCCeEEEeCHHHHHHH
Q 024040 177 AFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVITVSSEEAIET 256 (273)
Q Consensus 177 ~iv~p~G~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~~~~~~~~~~glg~~~~~~~~~~~~~d~~v~v~d~e~~~a 256 (273)
+||+|+|+||+++|++.+|++.+|.+|||+||| +++.|+|+|++++
T Consensus 156 ~ivvp~GtGg~~~G~~~~~~~~~~~~~ii~v~~----------------------------------~~~~v~d~~~~~a 201 (244)
T cd00640 156 AVVVPVGGGGNIAGIARALKELLPNVKVIGVEP----------------------------------EVVTVSDEEALEA 201 (244)
T ss_pred EEEEecCccHHHHHHHHHHHHhCCCCEEEEEee----------------------------------eEEEECHHHHHHH
Confidence 999999999999999999999999999999998 8899999999999
Q ss_pred HHHHHHHcCceecccC
Q 024040 257 SKLLALKEGLLRQLLY 272 (273)
Q Consensus 257 ~~~l~~~eGi~~~ps~ 272 (273)
+++|+++||+++|||+
T Consensus 202 ~~~l~~~~gi~~~pss 217 (244)
T cd00640 202 IRLLAREEGILVEPSS 217 (244)
T ss_pred HHHHHHHcCceECHhH
Confidence 9999999999999996
No 58
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family. This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase).
Probab=100.00 E-value=3.2e-50 Score=365.19 Aligned_cols=262 Identities=18% Similarity=0.198 Sum_probs=218.7
Q ss_pred hhhHHHhhccCCCcceecccccCCCC-ceEEEEeCCCCC-CCchhhHHHHHHHHHHHHc----------------CCCCC
Q 024040 6 EIKKDVTELIGHTPMVYLNNVVDGCV-ARIAAKLEMMQP-CSSVKDRIAYSMIKDAEDK----------------GLITP 67 (273)
Q Consensus 6 ~~~~~i~~~~~~TPl~~~~~l~~~~g-~~l~~K~E~~~p-tGS~K~R~a~~~~~~a~~~----------------g~~~~ 67 (273)
..+.++.. +.+|||+++++|++.+| .+||+|+|++|+ |||||+||+.+.+.++.++ +.+++
T Consensus 12 ~~~~~~~~-~~~TPL~~~~~l~~~~g~~~v~~K~E~~~~~tgSFK~RG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (376)
T TIGR01747 12 AFHKKIPG-YRPTPLCALDHLANLLGLKKILVKDESKRFGLNAFKMLGGSYAIAQYLAEKLHLDIETLSFEHLKNDAIGE 90 (376)
T ss_pred HHHHhCCC-CCCCCCcchHHHHHHhCCCcEEEeeCCCCCCCCChHHHHHHHHHHHHHHHHhCCCcccCCHHHHhhhHHHh
Confidence 34555544 49999999999999999 599999999985 8999999999999887552 11111
Q ss_pred --CCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeE
Q 024040 68 --GKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGY 145 (273)
Q Consensus 68 --g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~ 145 (273)
+..+||++|+||||+|+|++|+.+|++|+||||+++++.|+..|+.+||+|+.+++ +++++.+.+++++++. +++
T Consensus 91 ~~~~~~vv~aSsGN~g~a~A~~Aa~~G~~~~I~vP~~~~~~k~~~i~~~GAeVi~v~~--~~~~a~~~a~~~~~~~-g~~ 167 (376)
T TIGR01747 91 KMGQATFATATDGNHGRGVAWAAQQLGQKAVVYMPKGSAQERVENILNLGAECTITDM--NYDDTVRLAMQMAQQH-GWV 167 (376)
T ss_pred hcCCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhc-CcE
Confidence 13459999999999999999999999999999999999999999999999999985 5889999999988876 678
Q ss_pred eeC-----CCCC--CcchHhhhhchHHHHHHhhCC----CcCEEEEecCCCccHHHHHHHHHhhCC--CcEEEEEecCCC
Q 024040 146 ILG-----QFEN--PANPEIHYETTGPEIWNDSGG----KVDAFIAGIGTGGTVTGAGRFLKEKNP--NIKVYGIEPSES 212 (273)
Q Consensus 146 ~~~-----~~~~--~~~~~~g~~t~~~Ei~~q~~~----~~d~iv~p~G~Gg~~~Gi~~~~k~~~~--~~~vigVe~~~~ 212 (273)
+++ +|+| |+.+ +||+|+++||++|++. .||+||+|+|+||+++|++.++++..+ .++||+|||+++
T Consensus 168 ~~~~~~~~~~~~~~~~ii-~G~~Tia~Ei~eQl~~~~~~~pD~vvvpvG~GGl~~Gi~~~~~~~~~~~~p~vi~Vep~ga 246 (376)
T TIGR01747 168 VVQDTAWEGYEKIPTWIM-QGYATLADEAVEQLREMGSVTPTHVLLQAGVGSMAGGVLGYFVDVYSENNPHSIVVEPDKA 246 (376)
T ss_pred EeccccccccccCCchHH-HHHHHHHHHHHHHhhccCCCCCCEEEECCchhHHHHHHHHHHHHhcCCCCCEEEEEeeCCC
Confidence 876 4655 4444 7999999999999963 699999999999999999999987654 379999999999
Q ss_pred cccc----C--CCC------CCccccccCCCCC---cccccccCCCeEEEeCHHHHHHHHHHHHHHc----CceecccC
Q 024040 213 AVLN----G--GQP------GKHLIQGIGAGVI---PPVLDVAMLDEVITVSSEEAIETSKLLALKE----GLLRQLLY 272 (273)
Q Consensus 213 ~~~~----~--~~~------~~~~~~glg~~~~---~~~~~~~~~d~~v~v~d~e~~~a~~~l~~~e----Gi~~~ps~ 272 (273)
+++. . +++ ..+.+++++++.. ++.+.++.+|.++.|+|+|+.+|+++|++.. ++++|||+
T Consensus 247 ~~~~~s~~~~~g~~~~~~~~~~Tiadgl~~~~~~~~~~~~~~~~~~~~v~V~D~ei~~A~~~L~~~~g~~~~i~~epag 325 (376)
T TIGR01747 247 DCLYQSAVKKDGDIVNVGGDMATIMAGLACGEPNPISWEILRNCTSQFISAQDSVAAKGMRVLGAPYGGDPRIISGESG 325 (376)
T ss_pred CHHHHHHHhcCCCeEEcCCCccccccccccCCcchHHHHHHHhcCCEEEEcCHHHHHHHHHHHhcccCCCCeEeeeCch
Confidence 9864 2 332 1356788887643 4456678899999999999999999999865 59999986
No 59
>TIGR00260 thrC threonine synthase. Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.
Probab=100.00 E-value=4.7e-50 Score=360.39 Aligned_cols=253 Identities=24% Similarity=0.209 Sum_probs=214.9
Q ss_pred HHHhhccCCCcceecccccCCCCc-eEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHH
Q 024040 9 KDVTELIGHTPMVYLNNVVDGCVA-RIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFI 87 (273)
Q Consensus 9 ~~i~~~~~~TPl~~~~~l~~~~g~-~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~ 87 (273)
+.+...+++|||++++++++.+|. +||+|+|++|||||||||++.+++.++.++|. .+||++|+||||+|+|++
T Consensus 15 ~~~~l~~g~TPl~~~~~l~~~~g~~~i~~K~E~~nptGSfKdR~a~~~l~~a~~~g~-----~~vv~aSsGN~g~a~A~~ 89 (328)
T TIGR00260 15 DLVDLGEGVTPLFRSPALVANVGIKNLYVLELFHNPTLSFKDRGMAVALTKALELGN-----DTVLCASTGNTGAAAAAY 89 (328)
T ss_pred hhhhhccCCccCccchHHHHhcCCccEEehhhccCCchhhHhhhHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHHH
Confidence 457888999999999999888886 99999999999999999999999999998874 359999999999999999
Q ss_pred HHHcCCeEEEEecCC-CCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCC--CcchHhhhhchH
Q 024040 88 AASRGYKLIIIMPST-YSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFEN--PANPEIHYETTG 164 (273)
Q Consensus 88 a~~~g~~~~i~~p~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~~~g~~t~~ 164 (273)
|+.+|++|+||||+. +++.|+.+++.+||+|+.+++ +++++.+.+++++++. +.++++++ | |.++ .||.|++
T Consensus 90 a~~~g~~~~v~~p~~~~s~~k~~~~~~~GA~Vi~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~-n~~~~~~-~g~~t~~ 164 (328)
T TIGR00260 90 AGKAGVKVVILYPAGKISLGKLAQALGYNAEVVAIDG--NFDDAQRLVKQLFGDK-EALGLNSV-NSIPYRL-EGQKTYA 164 (328)
T ss_pred hccCCCcEEEEECCCCCCHHHHHHHHhcCcEEEEecC--CHHHHHHHHHHHHhhc-CeeecccC-CCCCeEe-eeehhHH
Confidence 999999999999998 899999999999999999985 5889999999988875 45555544 5 8877 5999999
Q ss_pred HHHHHhhCC-CcCEEEEecCCCccHHHHHHHHHhhCC-----CcEEEEEecCCCcccc-----CCCCC-----Ccccccc
Q 024040 165 PEIWNDSGG-KVDAFIAGIGTGGTVTGAGRFLKEKNP-----NIKVYGIEPSESAVLN-----GGQPG-----KHLIQGI 228 (273)
Q Consensus 165 ~Ei~~q~~~-~~d~iv~p~G~Gg~~~Gi~~~~k~~~~-----~~~vigVe~~~~~~~~-----~~~~~-----~~~~~gl 228 (273)
+||++|+++ .||+||+|+|+||+++|++.+|++... .+++++|||++++++. .+++. .+.++++
T Consensus 165 ~Ei~~q~~~~~~d~iv~~vG~GG~~~G~~~~~~~~~~~g~~~~p~v~~Ve~~~~~~~~~~~~~~g~~~~~~~~~t~~~~l 244 (328)
T TIGR00260 165 FEAVEQLGWEAPDKVVVPVPNSGNFGAILKGFKEKKEGGLDSLPVKRGIQAEGAADIVRAFLESGQWEPIEDPATLSTAI 244 (328)
T ss_pred HHHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHHHhcCCccCCceeEEEcCCCChHHHHHHcCCCcCcCCCCCccCcce
Confidence 999999974 799999999999999999999997511 2399999999995442 23221 3445565
Q ss_pred CCCCCccc------ccccCCCeEEEeCHHHHHHHHHHHHHHcCceecccC
Q 024040 229 GAGVIPPV------LDVAMLDEVITVSSEEAIETSKLLALKEGLLRQLLY 272 (273)
Q Consensus 229 g~~~~~~~------~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~~ps~ 272 (273)
+.+. |.+ +.+.++|+++.|+|+|+++++++|++++|+++|||+
T Consensus 245 ~~~~-p~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~pss 293 (328)
T TIGR00260 245 DIGN-PANWERALELFRRSNGNAEDVSDEEILEAIKLLAREEGYFVEPHS 293 (328)
T ss_pred ecCC-CCCHHHHHHHHHhcCCcEEecCHHHHHHHHHHHHHhcCeeECchH
Confidence 5442 322 234678999999999999999999999999999996
No 60
>PRK13028 tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=9.3e-49 Score=356.60 Aligned_cols=259 Identities=23% Similarity=0.223 Sum_probs=205.8
Q ss_pred HHHhhccC-CCcceecccccCCC-CceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHH
Q 024040 9 KDVTELIG-HTPMVYLNNVVDGC-VARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAF 86 (273)
Q Consensus 9 ~~i~~~~~-~TPl~~~~~l~~~~-g~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~ 86 (273)
..+..+++ +|||+++++|++.+ +.+||+|+|++|||||||+|.+..++..+.+.|+ ...|+++|+||||+|+|+
T Consensus 53 ~~~~~~~g~pTPL~~~~~Ls~~~Gg~~IylK~EdlnptGS~K~r~al~~~l~A~~~G~----~~vI~etgsGnhG~A~A~ 128 (402)
T PRK13028 53 YLLKHYVGRPTPLYHAKRLSEELGGAQIYLKREDLNHTGAHKINNCLGQALLAKRMGK----KRLIAETGAGQHGVATAT 128 (402)
T ss_pred HHHHHhCCCCCCeeehHHhHhhcCCCeEEEEECCCCCCcchHHHHHHHHHHHHHHcCC----CeEEEecCcHHHHHHHHH
Confidence 34456676 79999999999988 5899999999999999999999999999999885 444557899999999999
Q ss_pred HHHHcCCeEEEEecCCCCH---HHHHHHHHcCCEEEEeCC-CCChhHHHHHHHH-HHHhCCCeEeeCCC-C----CCcch
Q 024040 87 IAASRGYKLIIIMPSTYSI---ERRIILRALGAEVYLADP-AVGFEGFVKKGEE-ILNRTPNGYILGQF-E----NPANP 156 (273)
Q Consensus 87 ~a~~~g~~~~i~~p~~~~~---~~~~~~~~~Ga~v~~~~~-~~~~~~~~~~a~~-~~~~~~~~~~~~~~-~----~~~~~ 156 (273)
+|+++|++|+||||+..++ .|+.+|+.+||+|+.++. ..+++++.+.+.+ ++++.++.+|+.+. . .|.++
T Consensus 129 aaa~~Gl~~~I~m~~~d~~~q~~nv~~mr~~GAeVi~v~~g~~~~~~a~~~a~~~~~~~~~~~~y~~~s~~gp~p~p~~v 208 (402)
T PRK13028 129 AAALFGLECEIYMGEVDIERQHPNVFRMKLLGAEVVPVTRGGRTLKEAVDSAFEDYLKDPDNTHYAIGSVVGPHPFPMMV 208 (402)
T ss_pred HHHHcCCCEEEEECCCcchhhHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHhcCCcEEEecCcCCCCCcHHHH
Confidence 9999999999999985433 568899999999999984 3468888888754 55553456666322 1 23445
Q ss_pred HhhhhchHHHHHHhhC----CCcCEEEEecCCCccHHHHHHHHHhhCCCcEEEEEecCC--------CccccCCCCC---
Q 024040 157 EIHYETTGPEIWNDSG----GKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSE--------SAVLNGGQPG--- 221 (273)
Q Consensus 157 ~~g~~t~~~Ei~~q~~----~~~d~iv~p~G~Gg~~~Gi~~~~k~~~~~~~vigVe~~~--------~~~~~~~~~~--- 221 (273)
..||++++.||.+|+. ..||+||+|+|+||+++|++.+|++ .++++||||||.+ ++++..+++.
T Consensus 209 ~~~q~tig~Ei~~Q~~~~~g~~pD~vV~~VGgGg~~~Gi~~~f~~-~~~v~iigVE~~G~~~~~~~~aa~l~~g~~g~~~ 287 (402)
T PRK13028 209 RDFQSVIGEEAREQFLEMTGRLPDAVVACVGGGSNAIGLFSAFLD-DESVRLVGVEPAGRGLDLGEHAATLTLGKPGVIH 287 (402)
T ss_pred HHHhHHHHHHHHHHHHHhhCCCCCEEEEEcCchHHHHHHHHHHHh-CCCceEEEEecCCCCcccccccccccCCCcceec
Confidence 5699999999999973 3699999999999999999999986 4889999999998 6666544331
Q ss_pred -----------------CccccccCCCCC-ccc--ccccCCCeEEEeCHHHHHHHHHHHHHHcCceecccC
Q 024040 222 -----------------KHLIQGIGAGVI-PPV--LDVAMLDEVITVSSEEAIETSKLLALKEGLLRQLLY 272 (273)
Q Consensus 222 -----------------~~~~~glg~~~~-~~~--~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~~ps~ 272 (273)
.+++.+++.+.+ |.. +.....|+++.|+|+|+++|+++|+++|||+++++|
T Consensus 288 g~~~~~l~~~~g~~~~~~sia~gl~~~~vgp~~~~l~~~~~~~~v~VtD~eal~a~~~La~~eGIi~~~~s 358 (402)
T PRK13028 288 GFKSYVLQDEDGEPAPVHSIAAGLDYPGVGPEHAYLKDIGRVEYVTATDEEALDAFFLLSRTEGIIPALES 358 (402)
T ss_pred ccceeeccccCCCcCCccceeccccCCCCCHHHHHHHHhcCcEEEEECHHHHHHHHHHHHHhcCCeeccHH
Confidence 223345543221 221 234556899999999999999999999999999987
No 61
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme. This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.
Probab=100.00 E-value=1.2e-48 Score=358.72 Aligned_cols=257 Identities=22% Similarity=0.250 Sum_probs=205.1
Q ss_pred hhHHHhhccCCCcceecccccCCCC--ceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEe-eCCChHHHH
Q 024040 7 IKKDVTELIGHTPMVYLNNVVDGCV--ARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIE-LTSGNTGIG 83 (273)
Q Consensus 7 ~~~~i~~~~~~TPl~~~~~l~~~~g--~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~-~ssGN~g~a 83 (273)
+.+.+....++|||+++++|++.+| ++||+|+|++|||||||+|++.+++.++.++|. .. +++ +|+||||+|
T Consensus 58 v~~~~~l~g~pTPL~r~~~L~~~lg~~~~Iy~K~E~~nPtGS~K~R~A~~~~~~a~~~G~----~~-~vtetssGN~G~a 132 (419)
T TIGR01415 58 VLKRYAQIGRPTPLIRAKGLEELLGTPARIYYKYESVSPTGSHKINTAIAQAYYAKIEGA----KR-LVTETGAGQWGSA 132 (419)
T ss_pred HHHHHHhcCCCCCeEEccchhhhhCCCceEEEEECCCCCCCCcHHHHHHHHHHHHHHcCC----Ce-EEEecCchHHHHH
Confidence 4445555556999999999998877 699999999999999999999999999999985 34 665 688999999
Q ss_pred HHHHHHHcCCeEEEEecCCC---CHHHHHHHHHcCCEEEEeCCCCChhH------------------HHHHHHHHHHhCC
Q 024040 84 LAFIAASRGYKLIIIMPSTY---SIERRIILRALGAEVYLADPAVGFEG------------------FVKKGEEILNRTP 142 (273)
Q Consensus 84 ~A~~a~~~g~~~~i~~p~~~---~~~~~~~~~~~Ga~v~~~~~~~~~~~------------------~~~~a~~~~~~~~ 142 (273)
+|++|+++|++|+||||+.. ++.|+.+|+.+||+|+.++++ +++ ++..+.+.+++++
T Consensus 133 lA~aaa~~Gl~~~V~mp~~s~~~k~~k~~~m~~~GA~Vi~~~~~--~~~~~r~~~~~~p~~~gsl~~ai~~a~e~a~~~~ 210 (419)
T TIGR01415 133 LSLAGALFGLECKVFMVRVSFNQKPYRKYLMELYGAEVIPSPSE--FTEFGREVLKEDPDHPGSLGIAISEAIEYALSDE 210 (419)
T ss_pred HHHHHHHcCCcEEEEEeCCCcccCHHHHHHHHHcCCEEEEECCc--hhhHHHHhhhcccccccchHHHHHHHHHHHHhCC
Confidence 99999999999999999854 567899999999999999864 222 3556666666543
Q ss_pred -CeEeeCCCCCCcchHhhhhchHHHHHHhhCC---CcCEEEEecCCCccHHHHHHHHHhh----CCCcEEEEEecCCCcc
Q 024040 143 -NGYILGQFENPANPEIHYETTGPEIWNDSGG---KVDAFIAGIGTGGTVTGAGRFLKEK----NPNIKVYGIEPSESAV 214 (273)
Q Consensus 143 -~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~---~~d~iv~p~G~Gg~~~Gi~~~~k~~----~~~~~vigVe~~~~~~ 214 (273)
..|+++++.|+ ...||.++|+||++|++. .||+||+|+|+||+++|++.+|.+. .+++|||+|||++|+.
T Consensus 211 ~~~y~~~~~~n~--~~~h~~~ig~Ei~~Ql~~~g~~pD~vv~~vG~Gg~~~Gi~~~f~~~~l~g~~~~rviaVep~~~~~ 288 (419)
T TIGR01415 211 DTKYSLGSVLNH--VLLHQTVIGLEAKKQMEEAGEDPDVIIGCVGGGSNFAGLAFPFVADKLSGKIDRRFIAAEPKACPT 288 (419)
T ss_pred CCEEEeCCCCcH--HHHHHHHHHHHHHHHHHhcCCCCCEEEEEeCchHHHHHHHHHHHHHHhcCCCCCEEEEEeeCCChh
Confidence 44556665553 336999999999999964 4999999999999999999988432 2579999999999988
Q ss_pred ccCCCC----------CC-ccccccCCCCCcccc-----------------cccCCCeEEEeCHHHHHHHHHHHHHHcCc
Q 024040 215 LNGGQP----------GK-HLIQGIGAGVIPPVL-----------------DVAMLDEVITVSSEEAIETSKLLALKEGL 266 (273)
Q Consensus 215 ~~~~~~----------~~-~~~~glg~~~~~~~~-----------------~~~~~d~~v~v~d~e~~~a~~~l~~~eGi 266 (273)
+..+.. .+ ..+.++|.++.|... .++.+++++.|+|+|+++|+++|+++|||
T Consensus 289 l~~g~~~yd~~~~~~~~p~~~~~~lG~~~~p~~~~a~gl~~~~~~~~~~~l~~~~~~~~~~V~d~e~~~a~r~la~~eGi 368 (419)
T TIGR01415 289 LTRGEYRYDFGDTAGLTPLLKMYTLGHDFIPPPIHAGGLRYHGVAPTLSLLVNLGIVEARAYDQEEAFEAAVIFAKTEGI 368 (419)
T ss_pred hhcCcccccccccccCCcceeeeecCCCCCCcceeccccccCCccHHHHHHhhcCceEEEEECHHHHHHHHHHHHHhcCC
Confidence 765431 11 233456665544332 13455678999999999999999999999
Q ss_pred eecccC
Q 024040 267 LRQLLY 272 (273)
Q Consensus 267 ~~~ps~ 272 (273)
+++|||
T Consensus 369 ~~epss 374 (419)
T TIGR01415 369 VPAPES 374 (419)
T ss_pred ccccHH
Confidence 999997
No 62
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.
Probab=100.00 E-value=2.1e-49 Score=362.15 Aligned_cols=256 Identities=19% Similarity=0.176 Sum_probs=211.9
Q ss_pred hccCCCcceecccccCCCC-ceEEEEeCCCCC-CCchhhHHHHHHHHHHHH--cCCC--------------C--CCCeEE
Q 024040 13 ELIGHTPMVYLNNVVDGCV-ARIAAKLEMMQP-CSSVKDRIAYSMIKDAED--KGLI--------------T--PGKTVL 72 (273)
Q Consensus 13 ~~~~~TPl~~~~~l~~~~g-~~l~~K~E~~~p-tGS~K~R~a~~~~~~a~~--~g~~--------------~--~g~~~v 72 (273)
..+.+|||++++.|++.+| .+||+|+|++|+ |||||+||+.+.+..+.+ .|.. + ....+|
T Consensus 37 ~~~~~TPL~~~~~L~~~~g~~~v~lK~E~~q~~tGSFK~RGa~~~v~~l~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~v 116 (396)
T TIGR03528 37 PGYQPTPLAELDNLAKHLGVGSILVKDESYRFGLNAFKVLGGSYAIGKYLAEKLGKDISELSFEKLKSNEIREKLGDITF 116 (396)
T ss_pred CCCcCCCCcchHHHHHHhCCCcEEEeeCCCCCCcCChHHHHHHHHHHHHHHHHhCCCcccccHHHhhhHHHHhhccCcEE
Confidence 4669999999999999899 699999999985 999999999999988633 2210 0 001259
Q ss_pred EeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeC----
Q 024040 73 IELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILG---- 148 (273)
Q Consensus 73 v~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---- 148 (273)
|++|+||||+|+|++|+++|++|+||||+++++.|++.|+.|||+|+.+++ +++++.+.+++++++. +++|++
T Consensus 117 v~aSsGN~g~alA~~aa~~Gi~~~IvvP~~~~~~K~~~ir~~GAeVi~~~~--~~~~a~~~a~~~a~~~-g~~~v~~~~~ 193 (396)
T TIGR03528 117 VTATDGNHGRGVAWAANQLGQKSVVYMPKGSAQIRLENIRAEGAECTITDL--NYDDAVRLAWKMAQEN-GWVMVQDTAW 193 (396)
T ss_pred EEECccHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHhc-CcEeeccccc
Confidence 999999999999999999999999999999999999999999999999985 5889999999998876 778875
Q ss_pred -CCCC--CcchHhhhhchHHHHHHhhC----CCcCEEEEecCCCccHHHHHHHHHhh-CCC-cEEEEEecCCCccccC--
Q 024040 149 -QFEN--PANPEIHYETTGPEIWNDSG----GKVDAFIAGIGTGGTVTGAGRFLKEK-NPN-IKVYGIEPSESAVLNG-- 217 (273)
Q Consensus 149 -~~~~--~~~~~~g~~t~~~Ei~~q~~----~~~d~iv~p~G~Gg~~~Gi~~~~k~~-~~~-~~vigVe~~~~~~~~~-- 217 (273)
+|+| +..+ +||+|+++||++|++ +.||+||+|+|+||+++|++.++++. .+. ++||+|||++++++..
T Consensus 194 ~~~~~~~~~~i-~G~~Tig~EI~eQl~~~~~~~pD~vvvpvG~Ggl~~gi~~~~~~~~~~~~p~vi~Vep~~a~~l~~s~ 272 (396)
T TIGR03528 194 EGYEKIPTWIM-QGYGTLALEALEQLKEQGVEKPTHVFLQAGVGSFAGAVQGYFASAYGEERPITVIVEPDAADCLYRSA 272 (396)
T ss_pred cccccCchHHH-HHHhHHHHHHHHHHhhcCCCCCCEEEEcCCcchHHHHHHHHHHHhcCCCCCEEEEEccCCCchHHHHH
Confidence 5765 3333 699999999999996 36999999999999999999999554 343 5999999999987642
Q ss_pred ----CCC------CCccccccCCCC---CcccccccCCCeEEEeCHHHHHHHHHHHHH----HcCceecccC
Q 024040 218 ----GQP------GKHLIQGIGAGV---IPPVLDVAMLDEVITVSSEEAIETSKLLAL----KEGLLRQLLY 272 (273)
Q Consensus 218 ----~~~------~~~~~~glg~~~---~~~~~~~~~~d~~v~v~d~e~~~a~~~l~~----~eGi~~~ps~ 272 (273)
+.+ ..+.+++++++. .++.+.++++|+++.|+|+|+.+++++|++ ++++++|||+
T Consensus 273 ~~~~g~~~~~~g~~~Tiadgl~~~~p~~~~~~~~~~~~d~~v~VsD~ei~~a~r~La~~~~~~~~~~~epsg 344 (396)
T TIGR03528 273 IADDGKPHFVTGDMATIMAGLACGEPNTIGWEILRDYASQFISCPDWVAAKGMRILGNPLKGDPRVISGESG 344 (396)
T ss_pred HhcCCCEEEeCCCccceecccccCCccHHHHHHHHHhCCeEEEECHHHHHHHHHHHhcccCCCCceeecCcH
Confidence 222 134667776543 233445688999999999999999999998 6799999986
No 63
>TIGR00263 trpB tryptophan synthase, beta subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model.
Probab=100.00 E-value=1.3e-48 Score=356.71 Aligned_cols=259 Identities=22% Similarity=0.260 Sum_probs=201.3
Q ss_pred HHHhhccC-CCcceecccccCCCC-ceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHH
Q 024040 9 KDVTELIG-HTPMVYLNNVVDGCV-ARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAF 86 (273)
Q Consensus 9 ~~i~~~~~-~TPl~~~~~l~~~~g-~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~ 86 (273)
..+..+++ +|||+++++|++.+| .+||+|+|++|||||||+|++..++..+.+.|. ...|+++|+||||+|+|+
T Consensus 41 ~~~~~~~~~~TPL~~~~~l~~~~g~~~iy~K~E~~nptGS~K~R~a~~~~~~a~~~g~----~~vi~e~ssGN~G~alA~ 116 (385)
T TIGR00263 41 ELLRNYAGRPTPLTFAPNLTEALGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGK----KRIIAETGAGQHGVATAT 116 (385)
T ss_pred HHHHHhCCCCCCceehHHHHHHhCCCeEEEEeCCCCCCccchHHHHHHHHHHHHHcCC----CEEEEEcCcHHHHHHHHH
Confidence 34445554 899999999998887 799999999999999999999999999988874 343557899999999999
Q ss_pred HHHHcCCeEEEEecCC-CCH--HHHHHHHHcCCEEEEeCCC-CChhHHH-HHHHHHHHhCCCeEee-CCCCC----Ccch
Q 024040 87 IAASRGYKLIIIMPST-YSI--ERRIILRALGAEVYLADPA-VGFEGFV-KKGEEILNRTPNGYIL-GQFEN----PANP 156 (273)
Q Consensus 87 ~a~~~g~~~~i~~p~~-~~~--~~~~~~~~~Ga~v~~~~~~-~~~~~~~-~~a~~~~~~~~~~~~~-~~~~~----~~~~ 156 (273)
+|+++|++|+||||+. .+. .++++|+.+||+|+.++.. ..++++. +.+++++++.++.+|+ +++.+ +.++
T Consensus 117 ~a~~~Gl~~~Iv~p~~~~~~~~~~~~~~~~~GA~Vv~v~~~~~~~~~a~~~~~~~~~~~~~~~~y~~~~~~~~~p~~~~~ 196 (385)
T TIGR00263 117 AAALLGLDCEVYMGAEDVERQKPNVFRMELLGAKVIPVTSGSGTLKDAVNEALRDWVTSVDDTHYVLGSAVGPHPFPTMV 196 (385)
T ss_pred HHHHcCCCEEEEecCCcccccchHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCceEEeCCcCCCCCchHHH
Confidence 9999999999999975 443 5788999999999999753 3466664 4445556554455565 34332 2445
Q ss_pred HhhhhchHHHHHHhhC----CCcCEEEEecCCCccHHHHHHHHHhhCCCcEEEEEecCCCc--------cccCCCCC---
Q 024040 157 EIHYETTGPEIWNDSG----GKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESA--------VLNGGQPG--- 221 (273)
Q Consensus 157 ~~g~~t~~~Ei~~q~~----~~~d~iv~p~G~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~--------~~~~~~~~--- 221 (273)
..||+|+++||++|+. ..||+||+|+|+||+++|++.++.. .|++|||||||+++. .+..+.+.
T Consensus 197 ~~~~~t~g~Ei~~Ql~~~~~~~pD~vv~~vG~Gg~~~Gv~~~~~~-~~~~~iigVe~~gs~~~~~~~~~~~~~g~~~~~~ 275 (385)
T TIGR00263 197 RDFQSVIGEEAKEQILEQEGRLPDAVIACVGGGSNAIGIFYAFID-DPSVQLIGVEAGGLGIDTDKHAATLAKGSPGVLH 275 (385)
T ss_pred HHHhhHHHHHHHHHHHhhhCCCCCEEEEEeCchHHHHHHHHHHhh-CCCCeEEEEEeCCCcccchhhhhhhhcCCeeEec
Confidence 5799999999999983 2589999999999999999998855 689999999999852 23333211
Q ss_pred -----------------CccccccCCCCC-c--ccccccCCCeEEEeCHHHHHHHHHHHHHHcCceecccC
Q 024040 222 -----------------KHLIQGIGAGVI-P--PVLDVAMLDEVITVSSEEAIETSKLLALKEGLLRQLLY 272 (273)
Q Consensus 222 -----------------~~~~~glg~~~~-~--~~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~~ps~ 272 (273)
.+++.+++.... | ..+.....|+++.|+|+|+++++++|+++|||++||||
T Consensus 276 ~~~~~~~~~~~~~~~~~~tia~gl~~~~~~p~~~~~~~~~~~~~v~Vsd~e~~~a~~~la~~egi~~~~ss 346 (385)
T TIGR00263 276 GMKTYLLQDEDGQILEAHSVSAGLDYPGVGPEHAYLHETGRATYEAITDDEALEAFKLLSRNEGIIPALES 346 (385)
T ss_pred CcccccccCCCCcccccceeeccccCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHhcCCeechHH
Confidence 122334433221 2 12345567899999999999999999999999999987
No 64
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.
Probab=100.00 E-value=2.3e-48 Score=353.24 Aligned_cols=261 Identities=22% Similarity=0.222 Sum_probs=202.3
Q ss_pred hhHHHhhcc-CCCcceecccccCCC-CceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEe-eCCChHHHH
Q 024040 7 IKKDVTELI-GHTPMVYLNNVVDGC-VARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIE-LTSGNTGIG 83 (273)
Q Consensus 7 ~~~~i~~~~-~~TPl~~~~~l~~~~-g~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~-~ssGN~g~a 83 (273)
++..+..++ .+|||++++++++.+ +.+||+|+|++|||||||+|.+.+++..+.++|. .. +|+ +|+||||+|
T Consensus 23 ~~~~~~~~~~~~TPL~~l~~l~~~~g~~~l~~K~E~~nptgS~K~R~a~~~~~~a~~~g~----~~-vv~~~ssGN~g~a 97 (365)
T cd06446 23 LRELYKDYVGRPTPLYRAKRLSEYLGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGK----KR-VIAETGAGQHGVA 97 (365)
T ss_pred HHHHhhccCCCCCCceehHHHHHhhCCceEEEEeccCCCccchhHHHHHHHHHHHHHcCC----Ce-EEEecCchHHHHH
Confidence 344445444 499999999999877 5799999999999999999999999999998885 33 555 699999999
Q ss_pred HHHHHHHcCCeEEEEecCCCC---HHHHHHHHHcCCEEEEeCCC-CChhHHHHHHHHH-HHhC-CCeEeeCCC----CCC
Q 024040 84 LAFIAASRGYKLIIIMPSTYS---IERRIILRALGAEVYLADPA-VGFEGFVKKGEEI-LNRT-PNGYILGQF----ENP 153 (273)
Q Consensus 84 ~A~~a~~~g~~~~i~~p~~~~---~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~-~~~~-~~~~~~~~~----~~~ 153 (273)
+|++|+++|++|+||||+..+ +.|+++|+.+||+|+.++.. ..+++++..+.+. +++. +.+|+++++ .++
T Consensus 98 lA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~~~~GAeV~~~~~~~~~~~~~~~~a~~~~~~~~~~~~y~~~~~~~~~~~~ 177 (365)
T cd06446 98 TATACALFGLECEIYMGAVDVERQPLNVFRMELLGAEVVPVPSGSGTLKDAISEAIRDWVTNVEDTHYLLGSVVGPHPYP 177 (365)
T ss_pred HHHHHHHhCCCeEEEEcCCccccccchHHHHHHCCCEEEEeCCCCCcHHHHHHHHHHHHHhccCCceEecccccCCCCch
Confidence 999999999999999998643 36788999999999999853 2356665444443 3332 234444332 123
Q ss_pred cchHhhhhchHHHHHHhhC----CCcCEEEEecCCCccHHHHHHHHHhhCCCcEEEEEecCCCccccCC--------CC-
Q 024040 154 ANPEIHYETTGPEIWNDSG----GKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGG--------QP- 220 (273)
Q Consensus 154 ~~~~~g~~t~~~Ei~~q~~----~~~d~iv~p~G~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~~--------~~- 220 (273)
.++.+||+|+++||++|++ ..||+||+|+|+||+++|++++++. .+++|||+|||++++.+... ..
T Consensus 178 ~~~~ag~~t~~~EI~~Q~~~~~~~~~D~vv~~vG~GGt~~Gi~~g~~~-~~~~~vigVep~gs~~~~~~~~~~~~~g~~~ 256 (365)
T cd06446 178 NMVRDFQSVIGEEAKKQILEKEGELPDVVIACVGGGSNAAGLFYPFIN-DKDVKLIGVEAGGCGLETGGHAAYLFGGTAG 256 (365)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCCCEEEEecCccHHHHHHHHHHHh-CCCceEEEEcCCCCccccccceeeccCCCcc
Confidence 4566899999999999996 3699999999999999999999877 46899999999998876421 11
Q ss_pred -------------------CCccccccCCCC-Ccc--cccccCCCeEEEeCHHHHHHHHHHHHHHcCceecccCC
Q 024040 221 -------------------GKHLIQGIGAGV-IPP--VLDVAMLDEVITVSSEEAIETSKLLALKEGLLRQLLYE 273 (273)
Q Consensus 221 -------------------~~~~~~glg~~~-~~~--~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~~ps~~ 273 (273)
..+.+++++.+. .+. .+..+++|+++.|+|+|+++++++|+++|||++||||.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~r~la~~eGi~~epssg 331 (365)
T cd06446 257 VLHGLKMYTLQDEDGQIVPPHSISAGLDYPGVGPEHAYLKDSGRVEYVAVTDEEALEAFKLLARTEGIIPALESS 331 (365)
T ss_pred eecchhhhccccccCCCCCcccccccccCCCCCHHHHHHHHhCCceEEEeChHHHHHHHHHHHHhcCceeCccch
Confidence 112334454321 122 23456789999999999999999999999999999873
No 65
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=100.00 E-value=2.2e-48 Score=353.61 Aligned_cols=259 Identities=21% Similarity=0.280 Sum_probs=201.0
Q ss_pred HHHhhccC-CCcceecccccCCC-CceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHH
Q 024040 9 KDVTELIG-HTPMVYLNNVVDGC-VARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAF 86 (273)
Q Consensus 9 ~~i~~~~~-~TPl~~~~~l~~~~-g~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~ 86 (273)
..+..++| +|||+++++|++.+ +.+||+|+|++|||||||+|++...+..|.+.|+ ...|+++|+||||+|+|+
T Consensus 49 ~~~~~~~grpTPL~~~~~Ls~~~gg~~IylK~EdlnptGS~K~r~al~~~l~A~~~Gk----~~vIaetgaGnhG~A~A~ 124 (397)
T PRK04346 49 YLLKNYVGRPTPLYFAERLSEHLGGAKIYLKREDLNHTGAHKINNVLGQALLAKRMGK----KRIIAETGAGQHGVATAT 124 (397)
T ss_pred HHHHHhcCCCCCceEhHHHHHHcCCCeEEEEECCCCCccchHHHHHHHHHHHHHHcCC----CeEEEecCcHHHHHHHHH
Confidence 34456677 59999999999988 5899999999999999999999999999999886 444556899999999999
Q ss_pred HHHHcCCeEEEEecCC-CC--HHHHHHHHHcCCEEEEeCC-CCChhHHHHHHHH-HHHhCCCeEee-CCCCC----Ccch
Q 024040 87 IAASRGYKLIIIMPST-YS--IERRIILRALGAEVYLADP-AVGFEGFVKKGEE-ILNRTPNGYIL-GQFEN----PANP 156 (273)
Q Consensus 87 ~a~~~g~~~~i~~p~~-~~--~~~~~~~~~~Ga~v~~~~~-~~~~~~~~~~a~~-~~~~~~~~~~~-~~~~~----~~~~ 156 (273)
+|+++|++|+||||+. .+ ..|+.+|+.+||+|+.++. ..+++++.+.+.+ +.++.++.+|+ .+..+ |.++
T Consensus 125 ~aa~~Gl~c~I~mp~~d~~rq~~nv~~m~~lGA~Vv~v~~g~~~l~da~~ea~~~~~~~~~~~~y~~gs~~gphp~p~~v 204 (397)
T PRK04346 125 AAALLGLECVIYMGAEDVERQALNVFRMKLLGAEVVPVTSGSRTLKDAVNEALRDWVTNVEDTHYLIGSVAGPHPYPTMV 204 (397)
T ss_pred HHHHcCCcEEEEecCCchhhhhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEeCCcCCCCCchHHH
Confidence 9999999999999985 33 3578899999999999984 3467666555544 55553354554 32222 3445
Q ss_pred HhhhhchHHHHHHhhC----CCcCEEEEecCCCccHHHHHHHHHhhCCCcEEEEEecCCCc--------cccCCCCC---
Q 024040 157 EIHYETTGPEIWNDSG----GKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESA--------VLNGGQPG--- 221 (273)
Q Consensus 157 ~~g~~t~~~Ei~~q~~----~~~d~iv~p~G~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~--------~~~~~~~~--- 221 (273)
..||+|++.||.+|+. ..||+||+|+|+||+++|++.+|++ .+++|||||||.++. ++..+++.
T Consensus 205 ~~~q~tig~Ei~eQ~~~~~g~~pD~vVa~VGgGg~~~Gi~~~f~~-~~~v~iigVE~~G~~~~~~~~~a~l~~g~~g~~~ 283 (397)
T PRK04346 205 RDFQSVIGEEAKAQILEKEGRLPDAVVACVGGGSNAIGIFHPFID-DESVRLIGVEAAGKGLETGKHAATLTKGRPGVLH 283 (397)
T ss_pred HHhcchHHHHHHHHHHHhhCCCCCEEEEecCccHhHHHHHHHHhh-CCCCeEEEEecCCCccccccccchhhcCCeeeec
Confidence 5699999999999984 3699999999999999999999976 788999999999852 23223221
Q ss_pred -----------------CccccccCCCCC-c--ccccccCCCeEEEeCHHHHHHHHHHHHHHcCceecccC
Q 024040 222 -----------------KHLIQGIGAGVI-P--PVLDVAMLDEVITVSSEEAIETSKLLALKEGLLRQLLY 272 (273)
Q Consensus 222 -----------------~~~~~glg~~~~-~--~~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~~ps~ 272 (273)
.++..|+..+-+ | ..+.....++++.|+|+|+++|+++|+++|||+++++|
T Consensus 284 g~~~~~~~~~~g~~~~~~sis~gL~~pgvgp~~~~l~~~~~~~~v~VtD~eal~a~~~L~~~eGIi~~~es 354 (397)
T PRK04346 284 GAKTYLLQDEDGQILETHSISAGLDYPGVGPEHAYLKDIGRAEYVSITDDEALEAFQLLSRLEGIIPALES 354 (397)
T ss_pred cccceecccCCCccCCCceeeccccCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHcCCEeccHH
Confidence 123344433221 2 12334567899999999999999999999999987765
No 66
>PRK12391 tryptophan synthase subunit beta; Reviewed
Probab=100.00 E-value=1.1e-47 Score=352.77 Aligned_cols=255 Identities=21% Similarity=0.234 Sum_probs=204.3
Q ss_pred hhccCCCcceecccccCCCC--ceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEe-eCCChHHHHHHHHH
Q 024040 12 TELIGHTPMVYLNNVVDGCV--ARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIE-LTSGNTGIGLAFIA 88 (273)
Q Consensus 12 ~~~~~~TPl~~~~~l~~~~g--~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~-~ssGN~g~a~A~~a 88 (273)
....++|||+++++|++.+| .+||+|+|++|||||||+|++..++.++.++|. .. +++ +|+||||+|+|++|
T Consensus 72 ~~~~~~TPL~~~~~L~~~lg~~~~Iy~K~E~~nPtGS~K~R~A~~~a~~a~~~G~----~~-~vtetgsGN~G~alA~aa 146 (427)
T PRK12391 72 YRLWRPTPLIRARRLEKALGTPAKIYYKYEGVSPTGSHKPNTAVAQAYYNKKEGI----KR-LTTETGAGQWGSALALAC 146 (427)
T ss_pred HcccCCCCeeEchhhHhhhCCCceEEEEEcCCCCCCChHHHHHHHHHHHHHHCCC----CE-EEEccCchHHHHHHHHHH
Confidence 45678999999999998876 699999999999999999999999999999986 33 665 57899999999999
Q ss_pred HHcCCeEEEEecCC---CCHHHHHHHHHcCCEEEEeCCCCC----------------hhHHHHHHHHHHHhCCCeEeeCC
Q 024040 89 ASRGYKLIIIMPST---YSIERRIILRALGAEVYLADPAVG----------------FEGFVKKGEEILNRTPNGYILGQ 149 (273)
Q Consensus 89 ~~~g~~~~i~~p~~---~~~~~~~~~~~~Ga~v~~~~~~~~----------------~~~~~~~a~~~~~~~~~~~~~~~ 149 (273)
+++|++|+||||+. .++.|+.+|+.+||+|+.++++.+ +..++..+.+.+.+.++.+|..+
T Consensus 147 a~~Gl~~~V~mp~~s~~~k~~r~~~mr~~GA~Vi~~~~~~~~~~~~~~~~~~~~~gsl~~ai~~A~e~a~~~~~~~y~~~ 226 (427)
T PRK12391 147 ALFGLECTVFMVRVSYEQKPYRRSLMETYGAEVIPSPSDLTEAGRKILAEDPDHPGSLGIAISEAVEDAAKRPDTKYALG 226 (427)
T ss_pred HHcCCcEEEEEecCCcccCHHHHHHHHHCCCEEEEECCchhhhhhhhhhcCccccccHHHHHHHHHHHHHhCCCcEEEcC
Confidence 99999999999974 356789999999999999985311 11256677777766545555544
Q ss_pred CCCCcchHhhhhchHHHHHHhhC---CCcCEEEEecCCCccHHHHHHHHHh---hC-CCcEEEEEecCCCccccCCCC--
Q 024040 150 FENPANPEIHYETTGPEIWNDSG---GKVDAFIAGIGTGGTVTGAGRFLKE---KN-PNIKVYGIEPSESAVLNGGQP-- 220 (273)
Q Consensus 150 ~~~~~~~~~g~~t~~~Ei~~q~~---~~~d~iv~p~G~Gg~~~Gi~~~~k~---~~-~~~~vigVe~~~~~~~~~~~~-- 220 (273)
+.++ +...||.++++||++|++ ..||+||+|+|+||+++|++.+|.. .+ +++|||+|||++|+++..+..
T Consensus 227 s~~~-~~~~~~~~ig~Ei~~Ql~~~g~~pD~Vv~~vG~Gg~~aGi~~~f~~~~~~g~~~~riiaVEp~~~~~l~~g~~~~ 305 (427)
T PRK12391 227 SVLN-HVLLHQTVIGLEAKKQLELAGEYPDVVIGCVGGGSNFAGLAFPFLGDKLEGKKDTRFIAVEPAACPTLTKGEYAY 305 (427)
T ss_pred CCCc-HHHhhHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHHHhcCCCCceEEEEeeccchhhccccccc
Confidence 4333 344699999999999995 3699999999999999999997733 34 789999999999998765421
Q ss_pred ------C--C-ccccccCCCCCccccc-----------------ccCCCeEEEeCHHHHHHHHHHHHHHcCceecccC
Q 024040 221 ------G--K-HLIQGIGAGVIPPVLD-----------------VAMLDEVITVSSEEAIETSKLLALKEGLLRQLLY 272 (273)
Q Consensus 221 ------~--~-~~~~glg~~~~~~~~~-----------------~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~~ps~ 272 (273)
. + ..+.++|.++.|..+. ...+++.+.|+|+|+++|+++|+++|||+++|||
T Consensus 306 ~~gd~~~~~p~~~~~~lG~~~~p~~~~a~gl~~~g~~~~~~~l~~~~~~~~~~V~d~e~~~a~~~~a~~eGi~~~pss 383 (427)
T PRK12391 306 DFGDTAGLTPLLKMYTLGHDFVPPPIHAGGLRYHGMAPLVSLLVHEGLIEARAYPQTEVFEAAVLFARTEGIVPAPES 383 (427)
T ss_pred cccccccCCccceeEecCCCCCCccccccccccCCchHHHHHHHhcCceEEEEECHHHHHHHHHHHHHHcCCeechHH
Confidence 1 1 2355677665544331 2334588999999999999999999999999997
No 67
>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=4.6e-49 Score=330.73 Aligned_cols=263 Identities=40% Similarity=0.620 Sum_probs=229.4
Q ss_pred HHhhccCCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHH
Q 024040 10 DVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAA 89 (273)
Q Consensus 10 ~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~ 89 (273)
-+...+|+|||++.+.|++..|++|+.|.|.+||.||.|||.|.+++..|++.|++.||.. |++.|+||+|+++|..|+
T Consensus 42 Gv~~~IGnTpliri~sLs~aTGcnIlaK~Ef~NPggS~KDRvAl~iir~Aee~GkL~~gg~-v~EGtaGsTgIslA~v~~ 120 (391)
T KOG1481|consen 42 GVEGAIGNTPLIRINSLSNATGCNILAKAEFLNPGGSVKDRVALYIIRTAEEKGKLVRGGT-VVEGTAGSTGISLAHVAR 120 (391)
T ss_pred hhHHhhCCCceEEeeccccccccchhhhhhccCCCCChhhhhHHHHHHHHHHcCCcccCce-EEecCCCccchhHHHhhh
Confidence 4667899999999999999999999999999999999999999999999999999999965 999999999999999999
Q ss_pred HcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCC-----Ch-hHHHHHHHHHHHhCC--CeEeeCCCCCCcchHhhhh
Q 024040 90 SRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAV-----GF-EGFVKKGEEILNRTP--NGYILGQFENPANPEIHYE 161 (273)
Q Consensus 90 ~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~-----~~-~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~g~~ 161 (273)
.+|++|+|+||.+.+.+|.+.++.+||+|+.|++.. .| ..+.+.|.++..+.. ..+|.+||+|+.||.+||.
T Consensus 121 a~Gyk~~I~mPddqs~eK~~ile~LGA~V~rV~pa~i~dp~~yvn~Arr~an~~~~~~ngi~g~fAdQFeN~AN~~aHye 200 (391)
T KOG1481|consen 121 ALGYKCHIYMPDDQSQEKSDILEFLGAEVHRVPPAPIVDPNHYVNQARRAANETPNASNGIRGWFADQFENVANWLAHYE 200 (391)
T ss_pred hcCcceEEECCChHHHHHHHHHHHhcceeeecCCcCccChhHHHHHHHHHhhhcccccCCcccchhhhhcCHHHHHHHhc
Confidence 999999999999999999999999999999997532 12 234444444443331 3477899999999999999
Q ss_pred chHHHHHHhhCCCcCEEEEecCCCccHHHHHHHHHhhCCC-cEEEEEecCCCcccc-------------CCC----CCCc
Q 024040 162 TTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPN-IKVYGIEPSESAVLN-------------GGQ----PGKH 223 (273)
Q Consensus 162 t~~~Ei~~q~~~~~d~iv~p~G~Gg~~~Gi~~~~k~~~~~-~~vigVe~~~~~~~~-------------~~~----~~~~ 223 (273)
++|+||+.|..+++|++++.+|+|||++|+.+++|+..+. ++++..+|.++..+. .|+ ...+
T Consensus 201 tTGPEIw~QtkGniDaFia~~GTGGTiaGVskyLkek~~~~v~~~laDPpGSGlYnkV~~GVmy~~~e~eG~r~r~q~dt 280 (391)
T KOG1481|consen 201 TTGPEIWHQTKGNIDAFIAGTGTGGTIAGVSKYLKEKSDGRVAVFLADPPGSGLYNKVNYGVMYDHIETEGTRRRNQVDT 280 (391)
T ss_pred CcCcHHHHhhcCCcceEEeccCCCcchHHHHHHHhhcCCCceEEEEeCCCCCchhhhhhhhhhhhhhhhcCcccCCCcch
Confidence 9999999999999999999999999999999999998876 899999999985332 121 1356
Q ss_pred cccccCCCCCcccc--cccCCCeEEEeCHHHHHHHHHHHHHHcCceecccCC
Q 024040 224 LIQGIGAGVIPPVL--DVAMLDEVITVSSEEAIETSKLLALKEGLLRQLLYE 273 (273)
Q Consensus 224 ~~~glg~~~~~~~~--~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~~ps~~ 273 (273)
+.+|||...+..++ ..+++|+.+.|+|++++++.+.|...+|+|+|.||.
T Consensus 281 i~EGIGinRiT~Nf~m~~~liD~a~rv~Deqai~Msr~Ll~~dGLFvGsSsa 332 (391)
T KOG1481|consen 281 ITEGIGINRITGNFQMAEDLIDDAMRVTDEQAINMSRYLLDNDGLFVGSSSA 332 (391)
T ss_pred hhhcccccccccccccchhhhhhheecChHHHHHHHHHhhhcCceEecchhh
Confidence 77899987766554 467899999999999999999999999999999973
No 68
>PLN02618 tryptophan synthase, beta chain
Probab=100.00 E-value=7.7e-48 Score=350.68 Aligned_cols=262 Identities=21% Similarity=0.287 Sum_probs=202.7
Q ss_pred hhhHHHhhccC-CCcceecccccCCC------CceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCC
Q 024040 6 EIKKDVTELIG-HTPMVYLNNVVDGC------VARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSG 78 (273)
Q Consensus 6 ~~~~~i~~~~~-~TPl~~~~~l~~~~------g~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssG 78 (273)
+....+..++| +|||+++++|++.+ |++||+|+|++|||||||+|.+...+..|.+.|+ ...|+++|+|
T Consensus 54 ~~~~~l~~~vGr~TPL~~~~~Ls~~~g~~~~~g~~IylK~E~lnptGS~K~R~a~~~~l~A~~~g~----~~vIaesgaG 129 (410)
T PLN02618 54 ELAGILKDYVGRETPLYFAERLTEHYKRADGEGPEIYLKREDLNHTGAHKINNAVAQALLAKRLGK----KRIIAETGAG 129 (410)
T ss_pred HHHHHHHHhcCCCCceeEhhhHHHHhccccCCCCEEEEEeCCCCCccchHHHHHHHHHHHHHHcCC----CEEEEEcCcH
Confidence 34456778886 89999999999876 4899999999999999999999999998888875 4434455789
Q ss_pred hHHHHHHHHHHHcCCeEEEEecCCC---CHHHHHHHHHcCCEEEEeCC-CCChhHHHH-HHHHHHHhCCCeEee-CCCC-
Q 024040 79 NTGIGLAFIAASRGYKLIIIMPSTY---SIERRIILRALGAEVYLADP-AVGFEGFVK-KGEEILNRTPNGYIL-GQFE- 151 (273)
Q Consensus 79 N~g~a~A~~a~~~g~~~~i~~p~~~---~~~~~~~~~~~Ga~v~~~~~-~~~~~~~~~-~a~~~~~~~~~~~~~-~~~~- 151 (273)
|||+|+|++|+++|++|+||||+.. +..|+.+|+.+||+|+.++. +.+++++.. ..++++++.++.+|+ .+..
T Consensus 130 NhG~AlA~aaa~~Gl~~~I~m~~~~~~~~~~nv~~mr~lGA~Vi~v~~g~~~~~dA~~ea~~~~~~~~~~~~yi~gs~~g 209 (410)
T PLN02618 130 QHGVATATVCARFGLECIVYMGAQDMERQALNVFRMRLLGAEVRPVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAG 209 (410)
T ss_pred HHHHHHHHHHHHcCCcEEEEEcCCchhhhhhhHHHHHHCCCEEEEEeCCCCCHHHHHHHHHHHHHhccCCCEEEecCcCC
Confidence 9999999999999999999999853 34677899999999999964 356778764 445677653355555 2221
Q ss_pred -CC--cchHhhhhchHHHHHHhh----CCCcCEEEEecCCCccHHHHHHHHHhhCCCcEEEEEecCCC--------cccc
Q 024040 152 -NP--ANPEIHYETTGPEIWNDS----GGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSES--------AVLN 216 (273)
Q Consensus 152 -~~--~~~~~g~~t~~~Ei~~q~----~~~~d~iv~p~G~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~--------~~~~ 216 (273)
+| ..+..++.+++.||.+|+ +..||+||+|+|+||+++|++.+|+. .+++|||||||.++ +.+.
T Consensus 210 p~P~~~~v~~~q~tig~Ei~~Q~~~~~g~~pD~VV~~VGgGg~~~Gi~~~f~~-~~~v~ligVEa~G~~~~~~~~~a~l~ 288 (410)
T PLN02618 210 PHPYPMMVRDFHSVIGKETRRQAMEKWGGKPDVLVACVGGGSNAMGLFHEFID-DEDVRLIGVEAAGFGLDSGKHAATLT 288 (410)
T ss_pred CCCCHHHHHHhhHHHHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHHh-CCCceEEEEEeCCCcccccccccchh
Confidence 22 233469999999998776 34699999999999999999999975 68899999999987 2233
Q ss_pred CCCC--------------------CCccccccCCCCC-cc-c-ccccCCCeEEEeCHHHHHHHHHHHHHHcCceecccC
Q 024040 217 GGQP--------------------GKHLIQGIGAGVI-PP-V-LDVAMLDEVITVSSEEAIETSKLLALKEGLLRQLLY 272 (273)
Q Consensus 217 ~~~~--------------------~~~~~~glg~~~~-~~-~-~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~~ps~ 272 (273)
.+++ ..++..||..+-+ |. . +.....|+++.|+|+|+++|+++|+++|||++++||
T Consensus 289 ~g~~gv~~g~~~~~l~~~~g~~~~~~sia~gl~~pgvgp~~~~l~~~~~~~~v~VtD~Eal~a~~~La~~eGIi~~~sS 367 (410)
T PLN02618 289 KGEVGVLHGAMSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDTGRAEYYSVTDEEALEAFQRLSRLEGIIPALET 367 (410)
T ss_pred cCCcceeccccccccccccCCCCCCcchhhhhcCCCCcHHHHHHHhhcCcEEEEECHHHHHHHHHHHHHHcCceEchhH
Confidence 3322 1123344443211 21 1 223468899999999999999999999999999987
No 69
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=100.00 E-value=2.5e-48 Score=354.99 Aligned_cols=252 Identities=15% Similarity=0.082 Sum_probs=207.9
Q ss_pred hhccCCCcceecccccCCCCc-eEEEEeC-------CCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHH
Q 024040 12 TELIGHTPMVYLNNVVDGCVA-RIAAKLE-------MMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIG 83 (273)
Q Consensus 12 ~~~~~~TPl~~~~~l~~~~g~-~l~~K~E-------~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a 83 (273)
....+.|||+++++|++.+|. +||+|+| ++|||||||||++.+++.++.+.|. +.||++|+||||+|
T Consensus 57 ~~~~g~tpl~~~~~L~~~lG~~~v~~K~e~~~~K~E~~npTGSFKdRga~~~i~~a~~~g~-----~~Vv~aSsGN~g~a 131 (398)
T TIGR03844 57 LRTRGGPVTYKSEGLARELGLSDLYITFSGYWPERGAFMRTCSFKELEALPTMQRLKERGG-----KTLVVASAGNTGRA 131 (398)
T ss_pred CCCCCCCceeehHHHHHHhCCCeEEEEecCcccchhccCCccccHHHHHHHHHHHHHHcCC-----CEEEEECCCHHHHH
Confidence 346678999999999998997 9999554 5899999999999999999998873 45999999999999
Q ss_pred HHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhch
Q 024040 84 LAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETT 163 (273)
Q Consensus 84 ~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~ 163 (273)
+|++|+++|++|+||||++++..+...++.+||+|+.+++ +|+++.+.++++++++ +++..++++||..+ +|++|+
T Consensus 132 lA~~aa~~Gi~~~I~vP~~~~~~~~~~~~~~ga~vv~v~g--~~d~a~~~a~~~a~~~-g~~~~~~~~~p~~i-eG~~Ti 207 (398)
T TIGR03844 132 FAEVSAITGQPVILVVPKSSADRLWTTEPASSVLLVTVDG--DYTDAIALADRIATLP-GFVPEGGARNVARR-DGMGTV 207 (398)
T ss_pred HHHHHHHcCCcEEEEECCChHHHHHHHhhCCcEEEEECCC--CHHHHHHHHHHHHHhC-CccccCCCCCHHHH-hhHHHH
Confidence 9999999999999999998654334445789999999985 5899999999998875 55444566788877 699999
Q ss_pred HHHHHHhhCCCcCEEEEecCCCccHHHHHHHHHhhC-------CCcEEEEEecCCCcccc----CCCCC-----------
Q 024040 164 GPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKN-------PNIKVYGIEPSESAVLN----GGQPG----------- 221 (273)
Q Consensus 164 ~~Ei~~q~~~~~d~iv~p~G~Gg~~~Gi~~~~k~~~-------~~~~vigVe~~~~~~~~----~~~~~----------- 221 (273)
++||++|++..||+||+|+|+|+++.|++.+++++. ..+|+++||+++++++. .+...
T Consensus 208 ~~Ei~eql~~~PD~VvvPvG~G~~~~~~~~~~~~l~~~g~i~~~~P~l~~VQ~eg~~p~~~a~~~g~~~~~~~~~~~~~~ 287 (398)
T TIGR03844 208 MLDAAVTIGSLPDHYFQAVGSGTGGIAAWEAAMRLIEDGRFGSKLPRLHLAQNLPFVPMVNAWQEGRREIIPESDMPDAE 287 (398)
T ss_pred HHHHHHHcCCCCCEEEEecCCCHHHHHHHHHHHHHHHcCCccCCCCCEEEEEcCCchHHHHHHHcCCCccccccCCcccc
Confidence 999999997459999999999988999999998742 34799999999998764 33221
Q ss_pred ----CccccccCCCCCcc-------cccccCCCeEEEeCHHHHHHHHHHHHHHcCceecccC
Q 024040 222 ----KHLIQGIGAGVIPP-------VLDVAMLDEVITVSSEEAIETSKLLALKEGLLRQLLY 272 (273)
Q Consensus 222 ----~~~~~glg~~~~~~-------~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~~ps~ 272 (273)
.+.++++..+..+. ...++..++++.|+|+|+.+|+++|++++|+++||++
T Consensus 288 ~~~~~t~a~~l~i~~p~~~~~~~~l~air~~~g~~v~Vsd~eI~~A~~~l~~~~gi~vEpa~ 349 (398)
T TIGR03844 288 NSIEEVYSDVLTNRTPPYGVTGGVFDALIATGGQMYGVSNKEAVSAGKLFEESEGIDILPAA 349 (398)
T ss_pred ccccceecceeeeCCCCcchHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhhCCccccccH
Confidence 23456664443222 2346788999999999999999999999999999987
No 70
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=100.00 E-value=2.5e-48 Score=350.04 Aligned_cols=262 Identities=20% Similarity=0.215 Sum_probs=211.7
Q ss_pred hhhhHHHhhccCCCcceecccccCCCC--ceEEEEeCCCCCC---CchhhHHHHHHHHHHHHcCCCCCCCeEEEee--CC
Q 024040 5 CEIKKDVTELIGHTPMVYLNNVVDGCV--ARIAAKLEMMQPC---SSVKDRIAYSMIKDAEDKGLITPGKTVLIEL--TS 77 (273)
Q Consensus 5 ~~~~~~i~~~~~~TPl~~~~~l~~~~g--~~l~~K~E~~~pt---GS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~--ss 77 (273)
++.++++.+.+++|||++++++++.+| .+||+|+|++||+ ||||+|.+.+++.+++++|. . +|+++ |+
T Consensus 3 ~~~~~~~~l~~g~TPL~~~~~l~~~~g~~~~v~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~----~-~vvs~G~s~ 77 (337)
T PRK12390 3 LQKFPRYPLTFGPTPIHPLKRLSAHLGGKVELYAKREDCNSGLAFGGNKTRKLEYLVPDALAQGA----D-TLVSIGGVQ 77 (337)
T ss_pred CCCCCccccCCCCCcceeHHHHHHHhCCCCeEEEEeCCCCCCCCccchhHHHHHHHHHHHHHcCC----C-EEEEeCCCc
Confidence 456678899999999999999888777 7999999999987 78899999999999999986 3 48887 88
Q ss_pred ChHHHHHHHHHHHcCCeEEEEecCCCC--------HHHHHHHHHcCCEEEEeCCCC--ChhHHHHHHHHHHHhCCC-eEe
Q 024040 78 GNTGIGLAFIAASRGYKLIIIMPSTYS--------IERRIILRALGAEVYLADPAV--GFEGFVKKGEEILNRTPN-GYI 146 (273)
Q Consensus 78 GN~g~a~A~~a~~~g~~~~i~~p~~~~--------~~~~~~~~~~Ga~v~~~~~~~--~~~~~~~~a~~~~~~~~~-~~~ 146 (273)
||||+|+|++|+++|++|+||++..++ ..|+.+++.|||+|+.++.+. .+.++++.+.+..++..+ .|.
T Consensus 78 GN~g~alA~aa~~~G~~~~iv~~~~~p~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (337)
T PRK12390 78 SNHTRQVAAVAAHLGMKCVLVQENWVNYEDAVYDRVGNILLSRIMGADVRLVPDGFDIGIRKSWEDALEDVRAAGGKPYA 157 (337)
T ss_pred cHHHHHHHHHHHHcCCeEEEEeCCCCCCccchhhccccHHHHHHCCCEEEEeCCCcchhHHHHHHHHHHHHHhCCCceEE
Confidence 999999999999999999999876544 236779999999999998641 234666677666666333 443
Q ss_pred eCCCCC--CcchHhhhhchHHHHHHh---hCCCcCEEEEecCCCccHHHHHHHHHhhCCCcEEEEEecCCCccccCCCC-
Q 024040 147 LGQFEN--PANPEIHYETTGPEIWND---SGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQP- 220 (273)
Q Consensus 147 ~~~~~~--~~~~~~g~~t~~~Ei~~q---~~~~~d~iv~p~G~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~~~~- 220 (273)
++.+.+ +... .||.++++||++| ++.+||+||+|+|+|||++|++.+||+..|++|||+|||++++.+...+.
T Consensus 158 ~~~~~~~~~~~~-~G~~~~a~Ei~~q~~~~~~~~d~vvv~vGtGgtlaGi~~~~k~~~~~~rvigV~~~~~~~~~~~~~~ 236 (337)
T PRK12390 158 IPAGASDHPLGG-LGFVGFAEEVRAQEAELGFKFDYIVVCSVTGSTQAGMVVGFAADGRARRVIGIDASAKPEQTRAQVL 236 (337)
T ss_pred eCCcCCCCCccc-HHHHHHHHHHHHHHHhcCCCCCEEEEecCcchhHHHHHHHHHhcCCCceEEEEEecCchHHHHHHHH
Confidence 555533 4444 5899999999998 44479999999999999999999999999999999999999876643221
Q ss_pred --CCccccccCCCC--Ccc--cccccCCCeEEEeCHHHHHHHHHHHHHHcCceecccC
Q 024040 221 --GKHLIQGIGAGV--IPP--VLDVAMLDEVITVSSEEAIETSKLLALKEGLLRQLLY 272 (273)
Q Consensus 221 --~~~~~~glg~~~--~~~--~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~~ps~ 272 (273)
.++.+++++.+. .+. .+..+++|+.|.|+|+|+++++++|++++||++||+|
T Consensus 237 ~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~vsd~e~~~a~~~la~~~gi~~ep~y 294 (337)
T PRK12390 237 RIARNTAELVELGRDITEDDVVLDERYAGPEYGLPNEGTLEAIRLCARLEGMLTDPVY 294 (337)
T ss_pred HHHHHHHHHhCCCCCCChhhEEEecccccCCCCCCCHHHHHHHHHHHHhcCccccccH
Confidence 233345555542 222 3566889999999999999999999999999999984
No 71
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=100.00 E-value=2.2e-48 Score=347.17 Aligned_cols=252 Identities=19% Similarity=0.173 Sum_probs=203.7
Q ss_pred ccCCCcceecccccCCCCceEEEEeCCCCCC--CchhhHHHHHHHHHHHHcCCCCCCCeEEEee--CCChHHHHHHHHHH
Q 024040 14 LIGHTPMVYLNNVVDGCVARIAAKLEMMQPC--SSVKDRIAYSMIKDAEDKGLITPGKTVLIEL--TSGNTGIGLAFIAA 89 (273)
Q Consensus 14 ~~~~TPl~~~~~l~~~~g~~l~~K~E~~~pt--GS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~--ssGN~g~a~A~~a~ 89 (273)
.-.+|||+++++|++..|.+||+|+|++||+ ||||+|++.+++.+++++|. ++||++ |+||||+|+|++|+
T Consensus 4 ~~~~TPl~~~~~l~~~~g~~l~~K~E~l~p~~~gs~K~R~~~~~l~~a~~~g~-----~~vv~~g~ssGN~g~alA~~a~ 78 (311)
T TIGR01275 4 IPWPTPIQYLPRISREIGAEIYIKRDDLTGLGIGGNKIRKLEYLLADALSKGA-----DTVITVGAIQSNHARATALAAK 78 (311)
T ss_pred CCCCCcceechhhhhhcCCeEEEEeccCcCCCCCchhHHHHHHHHHHHHHcCC-----CEEEEcCCchhHHHHHHHHHHH
Confidence 4579999999999988889999999999998 99999999999999999885 349998 56999999999999
Q ss_pred HcCCeEEEEecCCC-CHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHH----hCC-CeEeeCCCCCCcchHhhhhch
Q 024040 90 SRGYKLIIIMPSTY-SIERRIILRALGAEVYLADPAVGFEGFVKKGEEILN----RTP-NGYILGQFENPANPEIHYETT 163 (273)
Q Consensus 90 ~~g~~~~i~~p~~~-~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~----~~~-~~~~~~~~~~~~~~~~g~~t~ 163 (273)
++|++++||||+.. +..+..+++.+||+|+.++.. ++++..+.++++++ +.+ ..++.+++.||.+.+ |+.++
T Consensus 79 ~~G~~~~ivvp~~~~~~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-g~~~~ 156 (311)
T TIGR01275 79 KLGLDAVLVLREKEELNGNLLLDKLMGAETRVYSAE-EYFEIMKYAEELAEELEKEGRKPYVIPVGGSNSLGTL-GYVEA 156 (311)
T ss_pred HhCCceEEEecCCccCCCCHHHHHHcCCEEEEECch-hhhhhHHHHHHHHHHHHhcCCCeEEECCCCCcHHHHH-HHHHH
Confidence 99999999999865 456677789999999999852 34444455555443 221 234557788998885 78889
Q ss_pred HHHHHHhhCC--CcCEEEEecCCCccHHHHHHHHHhhCCCcEEEEEecCCCccccCCC---CCCccccccCCC-CCcccc
Q 024040 164 GPEIWNDSGG--KVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQ---PGKHLIQGIGAG-VIPPVL 237 (273)
Q Consensus 164 ~~Ei~~q~~~--~~d~iv~p~G~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~~~---~~~~~~~glg~~-~~~~~~ 237 (273)
++||++|++. +||+||+|+|+|||++|++++||+++|+++||||||+.+.+..... ..++.+++++.+ ...+.+
T Consensus 157 ~~EI~~q~~~~~~~D~vv~~vGtGgt~~Gi~~~lk~~~~~~~vigV~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 236 (311)
T TIGR01275 157 VLEIATQLESEVKFDSIVVAAGSGGTIAGLSLGLSILNEDIRPVGVAVGRFGEDMTDKFVNLVKEIAEGLEVKASEVIPE 236 (311)
T ss_pred HHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCcEEEEEecccHHHHHHHHHHHHHHHHHHhCCCCCCCEEE
Confidence 9999999964 7999999999999999999999999999999999987653211111 122345566654 223445
Q ss_pred cccCCCeEEEeCHHHHHHHHHHHHHHcCceecccC
Q 024040 238 DVAMLDEVITVSSEEAIETSKLLALKEGLLRQLLY 272 (273)
Q Consensus 238 ~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~~ps~ 272 (273)
..++.+..+.|+|+|+++++++|++++||++||+|
T Consensus 237 ~~~~~~~~~~v~d~e~~~~~~~la~~~gi~vep~~ 271 (311)
T TIGR01275 237 LDDYSGPGYGKPTSEVAEIVKKVASREGIILDPVY 271 (311)
T ss_pred ECCcccCcCCCCCHHHHHHHHHHHHHhCCccCcch
Confidence 56778899999999999999999999999999963
No 72
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=100.00 E-value=2.2e-48 Score=349.60 Aligned_cols=260 Identities=22% Similarity=0.213 Sum_probs=211.5
Q ss_pred hhHHHhhccCCCcceecccccCCCCceEEEEeCCCCCC--CchhhHHHHHHHHHHHHcCCCCCCCeEEEeeC--CChHHH
Q 024040 7 IKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPC--SSVKDRIAYSMIKDAEDKGLITPGKTVLIELT--SGNTGI 82 (273)
Q Consensus 7 ~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~pt--GS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s--sGN~g~ 82 (273)
-++++...+++|||++++.|++.+|.+||+|+|++||+ ||||+|++.+++.++.++|. . +||++| +||||+
T Consensus 5 ~~~~~~~~~~~TPl~~~~~l~~~~g~~i~~K~E~lnp~g~gs~K~R~~~~~l~~a~~~g~----~-~vvt~g~s~gN~g~ 79 (331)
T PRK03910 5 RFPRLELAGLPTPLEPLPRLSAALGPDIYIKRDDLTGLALGGNKTRKLEFLLADALAQGA----D-TLITAGAIQSNHAR 79 (331)
T ss_pred cCCCccccCCCCCceEhhhhhHhhCCcEEEEeccCCCCCCCchHHHHHHHHHHHHHHcCC----C-EEEEcCcchhHHHH
Confidence 35668889999999999999887889999999999997 59999999999999998885 3 488774 499999
Q ss_pred HHHHHHHHcCCeEEEEecCCCCH--------HHHHHHHHcCCEEEEeCCCCChhH-HHHHHHHHHHhCCCeE-eeCCCCC
Q 024040 83 GLAFIAASRGYKLIIIMPSTYSI--------ERRIILRALGAEVYLADPAVGFEG-FVKKGEEILNRTPNGY-ILGQFEN 152 (273)
Q Consensus 83 a~A~~a~~~g~~~~i~~p~~~~~--------~~~~~~~~~Ga~v~~~~~~~~~~~-~~~~a~~~~~~~~~~~-~~~~~~~ 152 (273)
|+|++|+.+|++|+||||+..+. .|+..|+.+||+|+.++.+.++.+ +...++++.++.+..+ +..++.|
T Consensus 80 alA~~a~~~G~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~Ga~vi~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~ 159 (331)
T PRK03910 80 QTAAAAAKLGLKCVLLLENPVPTEAENYLANGNVLLDDLFGAEIHVVPAGTDMDAQLEELAEELRAQGRRPYVIPVGGSN 159 (331)
T ss_pred HHHHHHHHhCCcEEEEEcCCCCcccccccCCCcHHHHHHcCCEEEEeCccchHHHHHHHHHHHHHHcCCceEEECCCCCC
Confidence 99999999999999999998775 456899999999999986433323 3445666665543333 4567788
Q ss_pred CcchHhhhhchHHHHHHhhCC---CcCEEEEecCCCccHHHHHHHHHhhCCCcEEEEEecCCCccccCCCC---CCcccc
Q 024040 153 PANPEIHYETTGPEIWNDSGG---KVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQP---GKHLIQ 226 (273)
Q Consensus 153 ~~~~~~g~~t~~~Ei~~q~~~---~~d~iv~p~G~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~~~~---~~~~~~ 226 (273)
+.+.+ ||.+++.||++|++. .||+||+|+|+|||++|++++||+.+++++||||||++++.+....+ .....+
T Consensus 160 ~~~~~-g~~~~~~Ei~~q~~~~~~~~d~vv~~vGtGgt~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~~~~~~~~~~~a~ 238 (331)
T PRK03910 160 ALGAL-GYVACALEIAQQLAEGGVDFDAVVVASGSGGTHAGLAAGLAALGPDIPVIGVTVSRSAAEQEPKVAKLAQATAE 238 (331)
T ss_pred chhHH-HHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 89884 889999999999963 69999999999999999999999999999999999999865432111 122334
Q ss_pred ccCCC--CCc--ccccccCCCeEEEeCHHHHHHHHHHHHHHcCceecccC
Q 024040 227 GIGAG--VIP--PVLDVAMLDEVITVSSEEAIETSKLLALKEGLLRQLLY 272 (273)
Q Consensus 227 glg~~--~~~--~~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~~ps~ 272 (273)
+++.+ ..+ +.+.++++|+++.|+|+|+++++++|++++||++||+|
T Consensus 239 ~~g~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~ep~y 288 (331)
T PRK03910 239 LLGLPTEIPRADIRLWDDYVGPGYGVPTDEMLEAVKLLARTEGILLDPVY 288 (331)
T ss_pred HcCCCccCCcccEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCcccccc
Confidence 45433 112 23567889999999999999999999999999999973
No 73
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....
Probab=100.00 E-value=1.2e-47 Score=341.23 Aligned_cols=250 Identities=37% Similarity=0.520 Sum_probs=203.2
Q ss_pred HhhccCCCcceecc--cccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHH
Q 024040 11 VTELIGHTPMVYLN--NVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIA 88 (273)
Q Consensus 11 i~~~~~~TPl~~~~--~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a 88 (273)
|++++++|||++++ .++...+.+||+|+|++|||||||+|++.+++.++++++. .+|+++|+||||.|+|++|
T Consensus 1 i~~~~~~TPl~~~~~~~~~~~~~~~i~~K~E~~~ptgs~K~R~a~~~l~~a~~~~~-----~~vv~assGN~g~a~A~~a 75 (306)
T PF00291_consen 1 ISLGIGPTPLVRLPSRLLSELGGANIYLKREDLNPTGSFKDRGAYYLLSRAKEKGG-----RTVVGASSGNHGRALAYAA 75 (306)
T ss_dssp GGGGSSSS-EEEEHEHHHHHCTTSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTT-----SEEEEESSSHHHHHHHHHH
T ss_pred CcCCCcCCCEEECccccchhccCCeEEEEECCCCCcCCcccccchhhhhhcccccc-----ceeeeeccCCceehhhhhh
Confidence 57899999999965 4555667899999999999999999999999999998864 4599999999999999999
Q ss_pred HHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHh-------CCCeEeeCCCCCCcchHhhhh
Q 024040 89 ASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNR-------TPNGYILGQFENPANPEIHYE 161 (273)
Q Consensus 89 ~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~-------~~~~~~~~~~~~~~~~~~g~~ 161 (273)
+++|++|++|+|+++++.|+++++.+||+|+.++.. ++++.+.+.+++++ .++. ++++ ++.+...||.
T Consensus 76 ~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~g~~ 150 (306)
T PF00291_consen 76 ARLGLKCTIVVPEDVSPEKLKQMRALGAEVILVPGD--VEGAFDDAQELAKERAELLSPFNGE--LNQY-NNPNVIAGYA 150 (306)
T ss_dssp HHHTCEEEEEEETTSHHHHHHHHHHTTCEEEEESST--HHHHHHHHHHHHHHHHHHHHHSTTE--ESTT-TSHHHHHHHH
T ss_pred hhccccceeeeccccccccccceeeecceEEEcccc--ccccccccccccccccccccccccc--cCcc-cchhhhhhhh
Confidence 999999999999999999999999999999998753 44444444444332 1122 6677 4444447999
Q ss_pred chHHHHHHhhCCCcCE--EEEecCCCccHHHHHHHHHh--hCCCcEEEEEecCCCcccc----CCCC----CCccccccC
Q 024040 162 TTGPEIWNDSGGKVDA--FIAGIGTGGTVTGAGRFLKE--KNPNIKVYGIEPSESAVLN----GGQP----GKHLIQGIG 229 (273)
Q Consensus 162 t~~~Ei~~q~~~~~d~--iv~p~G~Gg~~~Gi~~~~k~--~~~~~~vigVe~~~~~~~~----~~~~----~~~~~~glg 229 (273)
++++||++|++ .||. ||+|+|+||+++|++.+++. . |++|||+|+|.+++++. .+.. ..+.+.+++
T Consensus 151 ~~~~Ei~~q~~-~~d~d~vvv~~GtGg~~~Gi~~~~~~~~~-~~~~vigv~~~~~~~~~~~~~~g~~~~~~~~~~~~gl~ 228 (306)
T PF00291_consen 151 TIGLEIYEQLG-KPDPDYVVVPVGTGGTAAGIAAGLKELIL-PPVRVIGVEPEGSDPLYRSFKAGKPIRLPGESTIAGLG 228 (306)
T ss_dssp HHHHHHHHHHT-TESESEEEEEESSSHHHHHHHHHHHHHCH-TTSEEEEEEETTGHHHHHHHHHTSCEHSSCHHSSTGGT
T ss_pred hcchhcccccc-cccceEEEecCCchhHHHHHHhhhhhhhc-ccccceeeeccCCccccccccccccccccceeeeeccc
Confidence 99999999997 6665 99999999999999999999 7 89999999999987764 2333 123556887
Q ss_pred CCC-Ccc----cccccCCCeEEEeCHHHHHHHHHHHHHHcCceecccC
Q 024040 230 AGV-IPP----VLDVAMLDEVITVSSEEAIETSKLLALKEGLLRQLLY 272 (273)
Q Consensus 230 ~~~-~~~----~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~~ps~ 272 (273)
.+. .+. .+.++++++++.|+|+|+.+++++|+++||+++||+|
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~~ 276 (306)
T PF00291_consen 229 VPMPFPGELDLELIDEYVGDVVGVSDEEALEAIRELAEREGILVEPSS 276 (306)
T ss_dssp SSSCTTTTHHHHHHHHETEEEEEEEHHHHHHHHHHHHHHHSB-B-HHH
T ss_pred CCccchhhhhhhhhhhccccccccchHHHHHHHHHHHHHcCcEEcHHH
Confidence 765 222 2456777888999999999999999999999999986
No 74
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=8.8e-47 Score=361.08 Aligned_cols=259 Identities=21% Similarity=0.235 Sum_probs=203.2
Q ss_pred HHhhccC-CCcceecccccCC----CC--ceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHH
Q 024040 10 DVTELIG-HTPMVYLNNVVDG----CV--ARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGI 82 (273)
Q Consensus 10 ~i~~~~~-~TPl~~~~~l~~~----~g--~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~ 82 (273)
-+..++| +|||+++++|++. +| .+||+|+|++|||||||+|++.+++..+.+.|+ .+.|+++|+||||+
T Consensus 318 ~~~~~iGrpTPL~~~~~Ls~~l~~~~G~g~~IylK~E~lNpTGS~KdR~Al~~i~~A~~~G~----~~~IvetssGNhG~ 393 (695)
T PRK13802 318 LNQRYVGRPSPLTEAPRFAERVKEKTGLDARVFLKREDLNHTGAHKINNALGQALLVKRMGK----TRVIAETGAGQHGV 393 (695)
T ss_pred HHHhcCCCCCceeEchhhhhhhHhhcCCCceEEEEEccCCCcCCcHHHHHHHHHHHHHHcCC----CCEEEEECcHHHHH
Confidence 3557788 9999999998753 44 799999999999999999999999999999986 44588999999999
Q ss_pred HHHHHHHHcCCeEEEEecCC---CCHHHHHHHHHcCCEEEEeCC-CCChhHHHHHH-HHHHHhCC-CeEeeCCCCCC---
Q 024040 83 GLAFIAASRGYKLIIIMPST---YSIERRIILRALGAEVYLADP-AVGFEGFVKKG-EEILNRTP-NGYILGQFENP--- 153 (273)
Q Consensus 83 a~A~~a~~~g~~~~i~~p~~---~~~~~~~~~~~~Ga~v~~~~~-~~~~~~~~~~a-~~~~~~~~-~~~~~~~~~~~--- 153 (273)
|+|++|+++|++|+||||+. .+..|+.+|+.|||+|+.++. ..+++++.+.+ ++++++.+ .+|+++++.||
T Consensus 394 AlA~aaA~~Gl~c~Ivmp~~~~~~~~~nv~~mr~lGAeVi~v~~g~~~l~~Ai~ea~~~~~~~~~~~~y~i~~~~g~~P~ 473 (695)
T PRK13802 394 ATATVCAMLGLKCRIYMGQIDARRQALNVARMRMLGAEVVEVTLGDRILKDAINEALRDWVTNVKDTHYLLGTVAGPHPF 473 (695)
T ss_pred HHHHHHHHcCCCEEEEEeCCcccccHHHHHHHHHcCCEEEEECCCCCcHHHHHHHHHHHHHHhcCCceEeecccCCCCCc
Confidence 99999999999999999985 367899999999999999984 33677776555 55665533 45677777654
Q ss_pred -cchHhhhhchHHHHHHhhCC-----CcCEEEEecCCCccHHHHHHHHHhhCCCcEEEEEecCCCccccC----------
Q 024040 154 -ANPEIHYETTGPEIWNDSGG-----KVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNG---------- 217 (273)
Q Consensus 154 -~~~~~g~~t~~~Ei~~q~~~-----~~d~iv~p~G~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~---------- 217 (273)
.++.+||.++|.||++|+.. .||+||+|+|+||+++|++.+|++ .+++|||||||.++.....
T Consensus 474 p~~v~agq~tiG~EI~eQ~~~~~g~~~pD~VVa~VGgGg~~~Gi~~~f~~-~~~vkligVE~~g~g~~~g~h~~~~~~g~ 552 (695)
T PRK13802 474 PAMVRDFQKIIGEEAKQQLQDWYGIDHPDAICACVGGGSNAIGVMNAFLD-DERVNLYGYEAGGNGPESGKHAIRFAPGT 552 (695)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEEcCCchHHHHHHHHHHHh-CCCceEEEEEecCCCccccchhhhhhhcc
Confidence 33557999999999999952 699999999999999999999976 6889999999998753221
Q ss_pred CCC-----------C---------CccccccCC-CCCcccccccCCCeE--EEeCHHHHHHHHHHHHHHcCceecccCC
Q 024040 218 GQP-----------G---------KHLIQGIGA-GVIPPVLDVAMLDEV--ITVSSEEAIETSKLLALKEGLLRQLLYE 273 (273)
Q Consensus 218 ~~~-----------~---------~~~~~glg~-~~~~~~~~~~~~d~~--v~v~d~e~~~a~~~l~~~eGi~~~ps~~ 273 (273)
+.+ . .++..||.. ++-|..-.....+.+ +.|+|+|++++.+.|++.|||+++|+|.
T Consensus 553 g~~g~~~g~~~~~~~~~~g~~~~~~sis~gLdy~gvgp~~~~l~~~~rv~~~~vtD~eal~a~~~La~~EGIipa~eS~ 631 (695)
T PRK13802 553 GELGMFQGAKSYLLENDEGQTLDTYSISAGLDYASVGPEHAWLKDIGRVNYSWATDEEAMNAFKDLCETEGIIPAIESS 631 (695)
T ss_pred CCccccccceeecccCCCCCccCccccccccCCCCCCchhHHHHhcCCeEEEEECHHHHHHHHHHHHHHcCccccchHH
Confidence 110 0 011122221 111211122335555 8999999999999999999999999973
No 75
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=100.00 E-value=1.6e-47 Score=344.82 Aligned_cols=261 Identities=21% Similarity=0.223 Sum_probs=211.6
Q ss_pred hhhHHHhhccCCCcceecccccCCCCc--eEEEEeCCCCCC---CchhhHHHHHHHHHHHHcCCCCCCCeEEEee--CCC
Q 024040 6 EIKKDVTELIGHTPMVYLNNVVDGCVA--RIAAKLEMMQPC---SSVKDRIAYSMIKDAEDKGLITPGKTVLIEL--TSG 78 (273)
Q Consensus 6 ~~~~~i~~~~~~TPl~~~~~l~~~~g~--~l~~K~E~~~pt---GS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~--ssG 78 (273)
.-++|+.+.+++|||++++++++.+|. +||+|+|++||+ ||||+|++.+++.+++++|. .+|+++ |+|
T Consensus 3 ~~~~~~~l~~g~TPl~~~~~l~~~~g~~~~l~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~-----~~vvs~ggs~g 77 (337)
T TIGR01274 3 SRFPRYPLTFGPSPIHPLPRLSQHLGGKVTLYAKREDCNSGLAFGGNKTRKLEYLIPDAQAQGC-----TTLVSIGGIQS 77 (337)
T ss_pred CcCCccccCCCCCCceEhHhhHHhcCCCceEEEEccCCcCCcCccchHHHHHHHHHHHHHHcCC-----CEEEECCCCcc
Confidence 345788899999999999999988764 999999999986 77899999999999999996 348877 679
Q ss_pred hHHHHHHHHHHHcCCeEEEEecCCCC--------HHHHHHHHHcCCEEEEeCCCC--ChhHHHHHHHHHHHhC-CCeEee
Q 024040 79 NTGIGLAFIAASRGYKLIIIMPSTYS--------IERRIILRALGAEVYLADPAV--GFEGFVKKGEEILNRT-PNGYIL 147 (273)
Q Consensus 79 N~g~a~A~~a~~~g~~~~i~~p~~~~--------~~~~~~~~~~Ga~v~~~~~~~--~~~~~~~~a~~~~~~~-~~~~~~ 147 (273)
|||+|+|++|+++|++|+||||+..+ +.|+.+|+.+||+|+.++... ...+.+..+.+.+++. +..+++
T Consensus 78 N~g~alA~~a~~~Gl~~~iv~~~~~~~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~i 157 (337)
T TIGR01274 78 NQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQLSRIMGADVRLDPDGFDIGHRNSWERALEEVRGAGGKPYPI 157 (337)
T ss_pred hHHHHHHHHHHHcCCcEEEEeccCCCccccchhccchHHHHHHcCCEEEEeCCcccccchHHHHHHHHHHHhcCCceEEe
Confidence 99999999999999999999998543 579999999999999998531 1235555555555554 344666
Q ss_pred CCCC--CCcchHhhhhchHHHHHHhh---CCCcCEEEEecCCCccHHHHHHHHHhhCCCcEEEEEecCCCccccCCC---
Q 024040 148 GQFE--NPANPEIHYETTGPEIWNDS---GGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQ--- 219 (273)
Q Consensus 148 ~~~~--~~~~~~~g~~t~~~Ei~~q~---~~~~d~iv~p~G~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~~~--- 219 (273)
+.+. ++... .|+.++++||++|+ +.+||+||+|+|+|||++|+++++++..+++|||+|||++++.+....
T Consensus 158 ~~~~~~~~~~~-~G~~~~~~Ei~eq~~~~~~~~D~vvv~vGtGgt~aGl~~~~~~~~~~~~vigV~~~~~~~~~~~~~~~ 236 (337)
T TIGR01274 158 PAGCSDHPLGG-LGFVGFAFEVREQEGELGFKFDYVVVCSVTGSTQAGMVAGFAADGRKDRVIGIDASATPEQTRAQILR 236 (337)
T ss_pred CCCCCCCccch-hHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHhHHHHHHHHHHhCCCCeEEEEEecCCHHHHHHHHHH
Confidence 5553 45555 48999999999995 347999999999999999999999999999999999999997663221
Q ss_pred CCCccccccCCCC--Cc--ccccccCCCeEEEeCHHHHHHHHHHHHHHcCceecccC
Q 024040 220 PGKHLIQGIGAGV--IP--PVLDVAMLDEVITVSSEEAIETSKLLALKEGLLRQLLY 272 (273)
Q Consensus 220 ~~~~~~~glg~~~--~~--~~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~~ps~ 272 (273)
...+.+++++.+. .+ +.+...+.|+.|.|+|+|+++++++|+++||+++||+|
T Consensus 237 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~la~~eGi~~ep~y 293 (337)
T TIGR01274 237 IARNTAEKIGLERDITEDDVVLDTRFAYPEYGVPNEGTLEAIRLCAKMEGVLTDPVY 293 (337)
T ss_pred HHHHHHHHhCCCCCcCccceEEeccccCCCcCCCCHHHHHHHHHHHHhcCCccCcch
Confidence 1234455565432 11 34566788999999999999999999999999999974
No 76
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=100.00 E-value=9.9e-48 Score=342.22 Aligned_cols=248 Identities=23% Similarity=0.255 Sum_probs=199.5
Q ss_pred CcceecccccCCC--CceEEEEeCCCCCC---CchhhHHHHHHHHHHHHcCCCCCCCeEEEee--CCChHHHHHHHHHHH
Q 024040 18 TPMVYLNNVVDGC--VARIAAKLEMMQPC---SSVKDRIAYSMIKDAEDKGLITPGKTVLIEL--TSGNTGIGLAFIAAS 90 (273)
Q Consensus 18 TPl~~~~~l~~~~--g~~l~~K~E~~~pt---GS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~--ssGN~g~a~A~~a~~ 90 (273)
|||+++++|++.+ +.+||+|+|++||+ ||||+|++.+++.+++++|. +.||++ |+||||+|+|++|++
T Consensus 1 TPl~~~~~l~~~~g~~~~l~~K~E~~np~gsfgs~K~R~~~~~l~~a~~~g~-----~~vv~~ggs~GN~g~alA~~a~~ 75 (307)
T cd06449 1 TPIQYLPRLSEHLGGKVEIYAKRDDCNSGLAFGGNKIRKLEYLLPDALAKGA-----DTLVTVGGIQSNHTRQVAAVAAK 75 (307)
T ss_pred CcccchhHHHHhhCCCCcEEEecccccCCCCccchHHHHHHHHHHHHHHcCC-----CEEEECCCchhHHHHHHHHHHHH
Confidence 8999999998877 57999999999998 56799999999999999885 348988 689999999999999
Q ss_pred cCCeEEEEecCCCC--------HHHHHHHHHcCCEEEEeCCCC--ChhHHHHHHH-HHHHhCCCeEe-eCCC-CCCcchH
Q 024040 91 RGYKLIIIMPSTYS--------IERRIILRALGAEVYLADPAV--GFEGFVKKGE-EILNRTPNGYI-LGQF-ENPANPE 157 (273)
Q Consensus 91 ~g~~~~i~~p~~~~--------~~~~~~~~~~Ga~v~~~~~~~--~~~~~~~~a~-~~~~~~~~~~~-~~~~-~~~~~~~ 157 (273)
+|++|+||||++.+ ..|+++++.+||+|+.++.+. ...++.+.+. ++.++.+..++ .+++ +||.++
T Consensus 76 ~G~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 154 (307)
T cd06449 76 LGLKCVLVQENWVPYSDAVYDRVGNILLSRIMGADVRLVSAGFDIGIRKSFEEAAEEVEAKGGKPYVIPAGGSEHPLGG- 154 (307)
T ss_pred cCCeEEEEecCCCCcccccccccccHHHHHHCCCEEEEECCcchhhHHHHHHHHHHHHHHcCCceEEecCCCCCCcccH-
Confidence 99999999999876 468999999999999998642 1122333333 33333223344 4555 499988
Q ss_pred hhhhchHHHHHHhhCC---CcCEEEEecCCCccHHHHHHHHHhhCCCcEEEEEecCCCccccCCCC---CCccccccCC-
Q 024040 158 IHYETTGPEIWNDSGG---KVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQP---GKHLIQGIGA- 230 (273)
Q Consensus 158 ~g~~t~~~Ei~~q~~~---~~d~iv~p~G~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~~~~---~~~~~~glg~- 230 (273)
.||.++++||++|++. .||+||+|+|+|||++|++++||+.++++|||+|||++++.+..... ....+.+++.
T Consensus 155 ~G~~t~~~Ei~~q~~~~~~~~d~vv~~~GtGgt~~G~~~~~~~~~~~~~ii~V~~~~~~~~~~~~~~~~~~~~~~~~g~~ 234 (307)
T cd06449 155 LGYVGFVLEIAQQEEELGFKFDSIVVCSVTGSTHAGLSVGLAALGRQRRVIGIDASAKPEKTKAQVLRIAQAKLAEEGLE 234 (307)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhcCCCCeEEEEEecCchHHHHHHHHHHHHHHHHHcCCC
Confidence 4999999999999964 69999999999999999999999999999999999999876532111 0112222332
Q ss_pred -CCCcccccccCCCeEEEeCHHHHHHHHHHHHHHcCceeccc
Q 024040 231 -GVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLRQLL 271 (273)
Q Consensus 231 -~~~~~~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~~ps 271 (273)
+..+..+..+++|+++.|+|+|+++++++|++++||++||.
T Consensus 235 ~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~la~~~Gi~~ep~ 276 (307)
T cd06449 235 VKEEDVVLDDDYAAPEYGIPNDETIEAIKLCARLEGIITDPV 276 (307)
T ss_pred CCcccEEEecCcccCCCCCCCHHHHHHHHHHHHHhCCccccc
Confidence 22355667788999999999999999999999999999995
No 77
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=100.00 E-value=6.2e-46 Score=333.26 Aligned_cols=260 Identities=18% Similarity=0.205 Sum_probs=202.8
Q ss_pred hhhhHHHhhccCCCcceecccccCCCCceEEEEeCCCCCC--CchhhHHHHHHHHHHHHcCCCCCCCeEEE--eeCCChH
Q 024040 5 CEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPC--SSVKDRIAYSMIKDAEDKGLITPGKTVLI--ELTSGNT 80 (273)
Q Consensus 5 ~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~pt--GS~K~R~a~~~~~~a~~~g~~~~g~~~vv--~~ssGN~ 80 (273)
+.-++++.+..++|||++++++++..|++||+|+|++||+ ||||+|++.+++.++.++|. .+ || ++|+|||
T Consensus 9 ~~~~~~~~l~~~~TPl~~~~~l~~~~g~~v~~K~E~l~~~~~gg~K~R~~~~~l~~a~~~G~----~~-vv~~~~ssGN~ 83 (329)
T PRK14045 9 LSKFPRVELIPWETPIQYLPNISRELGADVYVKRDDLTGLGIGGNKIRKLEYLLGDALSRGA----DV-VITVGAVHSNH 83 (329)
T ss_pred hhcCCCcccCCCCCCcccchhhHHHhCCeEEEEcccccCCCCCcchHHHHHhHHHHHHHcCC----CE-EEEeCccHHHH
Confidence 4556789999999999999999887889999999999996 89999999999999999885 33 76 5799999
Q ss_pred HHHHHHHHHHcCCeEEEEecCCCCHH-HHHHHHHcCCEEEEeCCCCC---hhHHHHHHHHHHHhCCCeEe-eCCCCCCcc
Q 024040 81 GIGLAFIAASRGYKLIIIMPSTYSIE-RRIILRALGAEVYLADPAVG---FEGFVKKGEEILNRTPNGYI-LGQFENPAN 155 (273)
Q Consensus 81 g~a~A~~a~~~g~~~~i~~p~~~~~~-~~~~~~~~Ga~v~~~~~~~~---~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ 155 (273)
|+|+|++|+++|++|++|||...+.. +...++.+||+++.++...+ .+.+.+.+++++++.+..+| .+++.|+.+
T Consensus 84 g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~n~~~ 163 (329)
T PRK14045 84 AFVTGLAAKKLGLDAVLVLRGKEELKGNYLLDKIMGIETRVYEAKDSFELMKYAEEVAEELKGEGRKPYIIPPGGASPVG 163 (329)
T ss_pred HHHHHHHHHHcCCeEEEEEeCCCCCCcCHHHHHHCCCEEEEECCCcccchHHHHHHHHHHHHhcCCCEEEECCCCCchhH
Confidence 99999999999999999999865433 66678999999998874322 23556666666655544555 456678888
Q ss_pred hHhhhhchHHHHHHhhC---CCcCEEEEecCCCccHHHHHHHHHhhCCCcEEEEEecCCCccccCCCC-----CCccccc
Q 024040 156 PEIHYETTGPEIWNDSG---GKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQP-----GKHLIQG 227 (273)
Q Consensus 156 ~~~g~~t~~~Ei~~q~~---~~~d~iv~p~G~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~~~~-----~~~~~~g 227 (273)
.. ||.+.+.||++|++ .++|+||+|+|||||++|+++++|..+|++|||||+|.+......+.. ....+.+
T Consensus 164 ~~-g~~~~~~EI~~q~~~~~~~~d~vv~~vGtGGt~aGi~~~lk~~~~~~kVigv~~~~~~~~~~~~~~~~~~~~~~~~g 242 (329)
T PRK14045 164 TL-GYVRAVGEIATQVKKLGVRFDSIVVAVGSGGTLAGLSLGLAILNAEWRVVGIAVGSFGEKMKEKVKNLVKKTKELLG 242 (329)
T ss_pred HH-HHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHhC
Confidence 85 76666669999996 379999999999999999999999999999999999976332111110 1112334
Q ss_pred cCCCC-CcccccccCCCeEEEeCHHHHHHHHHHHHHHcCceecccC
Q 024040 228 IGAGV-IPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLRQLLY 272 (273)
Q Consensus 228 lg~~~-~~~~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~~ps~ 272 (273)
++.+. .+. +.+.++|++..++ +|+++++++|+++|||++||.|
T Consensus 243 ~~~~~~~~~-~~d~~~~~y~~~~-~e~~~~~~~la~~eGi~ldpvy 286 (329)
T PRK14045 243 VKVKVQEPE-LYDYSFGEYGKIT-KEVAKLIRSVGTMEGLILDPVY 286 (329)
T ss_pred CCCCccceE-ecccccCCCCCCC-HHHHHHHHHHHHhhCCCCccch
Confidence 44433 222 2333457777777 7999999999999999999944
No 78
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=5.7e-45 Score=348.92 Aligned_cols=258 Identities=23% Similarity=0.234 Sum_probs=200.3
Q ss_pred HHhhccC-CCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHH
Q 024040 10 DVTELIG-HTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIA 88 (273)
Q Consensus 10 ~i~~~~~-~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a 88 (273)
.+..+.+ +|||+++++|++.+|.+||+|+|++|||||||+|.+...+..+.+.|+ .+.|+++|+||||+|+|++|
T Consensus 263 ~~~~~~grpTPL~~~~~Ls~~~G~~IylK~E~lnptGS~K~r~al~~~~~a~~~g~----~~vi~e~gsGnhG~A~A~~a 338 (610)
T PRK13803 263 LLQNYAGRPTPLTEAKRLSDIYGARIYLKREDLNHTGSHKINNALGQALLAKRMGK----TRIIAETGAGQHGVATATAC 338 (610)
T ss_pred HHHHhCCCCCcceeHHHHHHhhCCEEEEEeCCCCCcccHHHHHHHHHHHHHHHcCC----CEEEEecChHHHHHHHHHHH
Confidence 3445555 899999999998888999999999999999999999999999998875 44455689999999999999
Q ss_pred HHcCCeEEEEecCCC---CHHHHHHHHHcCCEEEEeCCC-CChhHHHHHH-HHHHHhCCCeEeeCCCC---C--CcchHh
Q 024040 89 ASRGYKLIIIMPSTY---SIERRIILRALGAEVYLADPA-VGFEGFVKKG-EEILNRTPNGYILGQFE---N--PANPEI 158 (273)
Q Consensus 89 ~~~g~~~~i~~p~~~---~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a-~~~~~~~~~~~~~~~~~---~--~~~~~~ 158 (273)
+++|++|+||||+.. +..|+.+|+.+||+|+.++.. .++.++.+.+ +++..+.++.+|+.++. + |.++..
T Consensus 339 a~~Gl~~~I~m~~~~~~~~~~nv~~m~~~GA~Vi~v~~~~~~~~~a~~~a~~~~~~~~~~~~y~~~~~~g~~p~p~~v~~ 418 (610)
T PRK13803 339 ALFGLKCTIFMGEEDIKRQALNVERMKLLGANVIPVLSGSKTLKDAVNEAIRDWVASVPDTHYLIGSAVGPHPYPEMVAY 418 (610)
T ss_pred HHcCCcEEEEEeCCcccchhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEeCCcCCCCCcHHHHHH
Confidence 999999999999764 356889999999999999852 3566665444 44434444566764432 2 334445
Q ss_pred hhhchHHHHHHhhC----CCcCEEEEecCCCccHHHHHHHHHhhCCCcEEEEEecCCCc--------cccCCCC------
Q 024040 159 HYETTGPEIWNDSG----GKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESA--------VLNGGQP------ 220 (273)
Q Consensus 159 g~~t~~~Ei~~q~~----~~~d~iv~p~G~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~--------~~~~~~~------ 220 (273)
||+|++.||++|+. ..||+||+|+|+||+++|++.+|++ .++++||||||.++. ++..+++
T Consensus 419 ~~~tig~Ei~~Q~~~~~g~~pD~vV~~vGgGg~~~Gi~~~f~~-~~~v~iigVE~~g~~~~~~~~~a~l~~g~~g~~~g~ 497 (610)
T PRK13803 419 FQSVIGEEAKEQLKEQTGKLPDAIIACVGGGSNAIGIFYHFLD-DPSVKLIGVEAGGKGVNTGEHAATIKKGRKGVLHGS 497 (610)
T ss_pred HhhHHHHHHHHHHHHhhCCCCCEEEEEeCcCHhHHHHHHHHhh-CCCceEEEEecCCCCcccccccchhhcCCeeeeccc
Confidence 89999999999984 2599999999999999999999964 788999999999862 2333322
Q ss_pred --------------CCccccccCCCCC-ccc--ccccCCCeEEEeCHHHHHHHHHHHHHHcCceecccC
Q 024040 221 --------------GKHLIQGIGAGVI-PPV--LDVAMLDEVITVSSEEAIETSKLLALKEGLLRQLLY 272 (273)
Q Consensus 221 --------------~~~~~~glg~~~~-~~~--~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~~ps~ 272 (273)
..+++.|+..+-+ |.. +.....++++.|+|+|+++|+++|+++|||+++++|
T Consensus 498 ~~~~~~~~~g~~~~~~sia~gl~~~gvg~~~~~~~~~~~~~~v~Vtd~ea~~a~~~La~~eGi~~~~ss 566 (610)
T PRK13803 498 MTYLMQDENGQILEPHSISAGLDYPGIGPMHANLFETGRAIYTSVTDEEALDAFKLLAKLEGIIPALES 566 (610)
T ss_pred eeeeecccCCcccCCceeeccCCCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHcCCccCcHH
Confidence 1123344443221 211 223445689999999999999999999999999987
No 79
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=4.3e-41 Score=304.82 Aligned_cols=254 Identities=24% Similarity=0.225 Sum_probs=218.2
Q ss_pred HHhhccCCCcceecccccCCCCc---eEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHH
Q 024040 10 DVTELIGHTPMVYLNNVVDGCVA---RIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAF 86 (273)
Q Consensus 10 ~i~~~~~~TPl~~~~~l~~~~g~---~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~ 86 (273)
...+..+.||+++.+++...++. ++|+|.|++|||||||||++..+++.+.+.|. .+|+++||||+|.|+|+
T Consensus 69 ~~~l~eg~tp~~~~~~~~~~l~~~~~~lyvk~~~~nPT~SFKDrg~~~~~~~~~~~g~-----~~I~~ASSGnTgAs~aa 143 (411)
T COG0498 69 AVSLGEGGTPLYKAPALAAPLGVLNDNLYVKELGHNPTGSFKDRGMTVLVSLAKELGA-----KTILCASSGNTGASAAA 143 (411)
T ss_pred hhhhhhccCccccCcccchhhccCCcceehhhhccCCCcchhhhhHHHHHHHHHHhcC-----CEEEEeCCchHHHHHHH
Confidence 45778899999999888887763 59999999999999999999999999999883 24999999999999999
Q ss_pred HHHHcCCeEEEEecCC-CCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhchHH
Q 024040 87 IAASRGYKLIIIMPST-YSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGP 165 (273)
Q Consensus 87 ~a~~~g~~~~i~~p~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~ 165 (273)
++.+.|++|+|++|.. ++..|+.+|..+||+++.+++ +||+|.+.+++++++. ++++....-||..+ .|+.|+++
T Consensus 144 ya~rag~~v~Vl~P~g~vs~~k~~q~~~~ga~~i~v~G--~fDda~~~vk~~~~~~-~~~~~~nsiNp~rl-egq~t~~f 219 (411)
T COG0498 144 YAARAGLKVFVLYPKGKVSPGKLAQMLTLGAHVIAVDG--NFDDAQELVKEAANRE-GLLSAVNSINPYRL-EGQKTYAF 219 (411)
T ss_pred HhccCCCeEEEEecCCCCCHHHHHHHHhcCCEEEEEcC--cHHHHHHHHHHHHhhC-CceeeccccCHHHh-hhhhhhHh
Confidence 9999999999999997 999999999999999999996 4999999999999865 55777777788888 59999999
Q ss_pred HHHHhhC-CCcCEEEEecCCCccHHHHHHHHHhhCCC------cEEEEEecCCCccccCCC-----CCCccccccCCCCC
Q 024040 166 EIWNDSG-GKVDAFIAGIGTGGTVTGAGRFLKEKNPN------IKVYGIEPSESAVLNGGQ-----PGKHLIQGIGAGVI 233 (273)
Q Consensus 166 Ei~~q~~-~~~d~iv~p~G~Gg~~~Gi~~~~k~~~~~------~~vigVe~~~~~~~~~~~-----~~~~~~~glg~~~~ 233 (273)
||++|++ ..||+|++|+|+||++.|++++|++..+. +++.+||++++.++.... ...+.+..|..+ .
T Consensus 220 e~~~ql~~~~p~~v~vPvGn~gni~a~~~g~~~~~~~g~i~~~p~~~~vqaeg~~p~~~~~~~~~~~~~T~a~am~I~-~ 298 (411)
T COG0498 220 EIAEQLGWKAPDHVVVPVGNGGNLLAIYKGFKEGLPIGKIDKAPNMNGVQAEGFSPGVYAWKEGRETPETIAPAMDIG-N 298 (411)
T ss_pred HHHHHhCCCCCCeEEEeCCchHHHHHHHHHHHhcccccchhcCchhhhhhHhhccchhhhcccccccccccccccccC-C
Confidence 9999997 47999999999999999999999987653 788999999987765321 234455566555 3
Q ss_pred ccccc------ccCCCeEEEeCHHHHHHHHHHHHHHcCceecccCC
Q 024040 234 PPVLD------VAMLDEVITVSSEEAIETSKLLALKEGLLRQLLYE 273 (273)
Q Consensus 234 ~~~~~------~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~~ps~~ 273 (273)
|.++. ++..+..+.|+|+|+++++++++++||++++|+|.
T Consensus 299 p~n~~r~l~a~~es~g~~~~vsdeEi~~a~~~l~~~eG~~~eP~sA 344 (411)
T COG0498 299 PSNWERALFALRESGGLAVAVSDEEILEAIKLLAEREGILIEPHSA 344 (411)
T ss_pred CCCHHHHHHHHHhcCCceEEeCHHHHHHHHHHHHHhCCcccCccHH
Confidence 44432 23346699999999999999999999999999873
No 80
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=100.00 E-value=6.6e-33 Score=237.32 Aligned_cols=256 Identities=22% Similarity=0.284 Sum_probs=194.1
Q ss_pred Hhhcc-CCCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHH
Q 024040 11 VTELI-GHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAA 89 (273)
Q Consensus 11 i~~~~-~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~ 89 (273)
+..+. ++|||+..++|++.+|.+||+|+|++|.||++|...+...+.-|++.|+ ++.|.+...|.||.|.|.+|+
T Consensus 49 l~~Y~GRptpLy~a~~Lt~~~gakiyLKREDL~HtGAHKiNN~lGQ~LLAkrMGK----~riIAETGAGQHGVAtAta~A 124 (396)
T COG0133 49 LKDYAGRPTPLYFAERLTEHLGAKIYLKREDLNHTGAHKINNALGQALLAKRMGK----TRIIAETGAGQHGVATATAAA 124 (396)
T ss_pred HHHhCCCCChhHHHHHHHHhhCceEEEehhhhcccchhhHHHHHHHHHHHHHhCC----ceEEeecCCCcccHHHHHHHH
Confidence 33344 4699999999999999999999999999999999999999999999997 665667777999999999999
Q ss_pred HcCCeEEEEecC-CC--CHHHHHHHHHcCCEEEEeCC-CCChhHHHHHH-HHHHHhCCCeEeeC-----CCCCCcchHhh
Q 024040 90 SRGYKLIIIMPS-TY--SIERRIILRALGAEVYLADP-AVGFEGFVKKG-EEILNRTPNGYILG-----QFENPANPEIH 159 (273)
Q Consensus 90 ~~g~~~~i~~p~-~~--~~~~~~~~~~~Ga~v~~~~~-~~~~~~~~~~a-~~~~~~~~~~~~~~-----~~~~~~~~~~g 159 (273)
++|++|+|||.. ++ +..++.+|+.+||+|+.|.. +.+..++.+.| +.+...-+..+|+- |.--|..+...
T Consensus 125 ~fgl~C~iYMGa~Dv~RQ~~NVfRM~LlGA~V~pV~sGs~TLKDA~neAlRdWvtn~~~ThY~iGsa~GPHPyP~iVRdF 204 (396)
T COG0133 125 LFGLECVIYMGAEDVERQALNVFRMRLLGAEVVPVTSGSGTLKDAINEALRDWVTNVEDTHYLIGSAAGPHPYPTIVRDF 204 (396)
T ss_pred HhCCceEEEecchhhhhcccchhhhhhcCceEEEeccCCchHHHHHHHHHHHHHhccccceEEEeeccCCCCchHHHHHH
Confidence 999999999975 33 34568899999999999864 45677776665 55666655666652 22224445567
Q ss_pred hhchHHHHHHhh----CCCcCEEEEecCCCccHHHHHHHHHhhCCCcEEEEEecCCC--------ccccCCCCC------
Q 024040 160 YETTGPEIWNDS----GGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSES--------AVLNGGQPG------ 221 (273)
Q Consensus 160 ~~t~~~Ei~~q~----~~~~d~iv~p~G~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~--------~~~~~~~~~------ 221 (273)
+..|+.|..+|+ +.-||+||.++|+|++..|++..|... +++++||||+.+. +++..|+++
T Consensus 205 Q~vIG~E~k~Qile~egrlPD~vvACVGGGSNAiG~F~~Fi~d-~~V~LiGvEaaG~Gi~t~~HaAtl~~G~~GvlhG~~ 283 (396)
T COG0133 205 QSVIGEEAKAQILEKEGRLPDAVVACVGGGSNAIGIFHPFIDD-ESVRLIGVEAAGKGIETGKHAATLTAGRPGVLHGMK 283 (396)
T ss_pred HHHHhHHHHHHHHHHhCCCCCeEEEeccCCcchhhhcccccCC-CCceEEEeccCcCccCCCccceeecCCCceeeeccc
Confidence 899999998886 345999999999999999999888653 6799999999764 234444431
Q ss_pred --------------CccccccCCCCC-ccc--ccccCCCeEEEeCHHHHHHHHHHHHHHcCceeccc
Q 024040 222 --------------KHLIQGIGAGVI-PPV--LDVAMLDEVITVSSEEAIETSKLLALKEGLLRQLL 271 (273)
Q Consensus 222 --------------~~~~~glg~~~~-~~~--~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~~ps 271 (273)
.++..||..+-+ |.. +.....-+.+.|+|+|+++|.+.|.+.|||+.--.
T Consensus 284 tyllQd~~GQi~e~hSISAGLDYPgVGPeha~l~~~gRa~y~~itD~EAl~af~~L~r~EGIIPALE 350 (396)
T COG0133 284 TYLLQDEDGQILESHSISAGLDYPGVGPEHAYLKDIGRAEYVSITDEEALEAFQLLSRLEGIIPALE 350 (396)
T ss_pred ceeeEcCCCCEeeeeeeccCCCCCCCChhHHHHHhcCceeEEecChHHHHHHHHHHHHhcCcchhhh
Confidence 111223322111 221 11122237789999999999999999999986543
No 81
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=100.00 E-value=6.7e-33 Score=236.74 Aligned_cols=263 Identities=22% Similarity=0.239 Sum_probs=208.0
Q ss_pred hhhhHHHhhccCCCcceecccccCCCCceEEEEeCCCCC--CCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCC--ChH
Q 024040 5 CEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQP--CSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTS--GNT 80 (273)
Q Consensus 5 ~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~p--tGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ss--GN~ 80 (273)
+.-++|+....++|||.+++++++.+|.+||+||||+.+ .|.+|.|+..+++.+|+.+|. + ++|++.+ +||
T Consensus 3 l~rf~R~~l~~~pTPiq~L~rls~~lg~eiYiKRDD~t~l~~gGNK~RKLefll~eal~~g~----d-TlvT~GgiQSNh 77 (323)
T COG2515 3 LSRFPRMELIFGPTPIQKLPRLSAHLGVEIYIKRDDLTGLAFGGNKIRKLEFLLGEALRKGA----D-TLVTYGGIQSNH 77 (323)
T ss_pred cccCCccccCCCCChhhhHHHHHHhcCeEEEEEcccccccccCccHHHHHHHHHhhhhhcCC----c-EEEEecccchhH
Confidence 456789999999999999999999999999999999966 689999999999999999986 4 4999855 999
Q ss_pred HHHHHHHHHHcCCeEEEEecCCC----CHHHHHHHHHcCCEEEEeCCCCCh--hHHHHHHHHHHHhCCC-eEeeCCC-CC
Q 024040 81 GIGLAFIAASRGYKLIIIMPSTY----SIERRIILRALGAEVYLADPAVGF--EGFVKKGEEILNRTPN-GYILGQF-EN 152 (273)
Q Consensus 81 g~a~A~~a~~~g~~~~i~~p~~~----~~~~~~~~~~~Ga~v~~~~~~~~~--~~~~~~a~~~~~~~~~-~~~~~~~-~~ 152 (273)
.+++|++|+++|++|+.++.... -..++...+.+|+++..++...++ +...+..++..++.++ .|.+... .|
T Consensus 78 ~r~tAavA~~lGl~~v~ile~~~~~y~~ngn~Ll~~l~G~~~~~~~~~~d~~~~~~~~~~~e~~~~~g~kpyvIp~GG~~ 157 (323)
T COG2515 78 VRQTAAVAAKLGLKCVLILENIEANYLLNGNLLLSKLMGAEVRAVDAGTDIGINASAEELAEEVRKQGGKPYVIPEGGSS 157 (323)
T ss_pred HHHHHHHHHhcCCcEEEEEeccccccccccchhhhhhcCceEEEecCCCChhhchhhHHHHHHHHhcCCCCcEeccCCcC
Confidence 99999999999999999997654 123566677899999999876554 3333333333333333 3333333 46
Q ss_pred CcchHhhhhchHHHHHHhhC--CCcCEEEEecCCCccHHHHHHHHHhhCCCcEEEEEecCCCccccCCCC---CCccccc
Q 024040 153 PANPEIHYETTGPEIWNDSG--GKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQP---GKHLIQG 227 (273)
Q Consensus 153 ~~~~~~g~~t~~~Ei~~q~~--~~~d~iv~p~G~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~~~~---~~~~~~g 227 (273)
|... .||...+.||.+|.. -.+|+|||++|||||.||+..++...+++.+|||+.....+.....+. ....++.
T Consensus 158 ~~g~-lGyv~~a~Ei~~Q~~~~~~fD~vVva~gs~gT~AGl~~g~~~~~~~~~ViG~~v~~~~~~~~~qv~~L~~~~a~~ 236 (323)
T COG2515 158 PLGA-LGYVRLALEIAEQAEQLLKFDSVVVAPGSGGTHAGLLVGLAQLGPDVEVIGIDVSADPEKLKEQVLNLAQATAEL 236 (323)
T ss_pred cccc-ccHHHHHHHHHHHHhhccCCCEEEEeCCCcchHHHHHHHhhhccCCCceEEEeecCCHHHHHHHHHHHHHHHHHH
Confidence 6555 599999999999986 579999999999999999999999999999999999887764332111 2333444
Q ss_pred cCCC-CCcccccccCCCeEEEeCHHHHHHHHHHHHHHcCceecccCC
Q 024040 228 IGAG-VIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLRQLLYE 273 (273)
Q Consensus 228 lg~~-~~~~~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~~ps~~ 273 (273)
++.+ ...+.++.++.-..+.++.+|.+++++.+++.|||+.+|-+|
T Consensus 237 ~~~~~~~~v~~~~dy~~~~Yg~p~~e~~e~i~~~~~~eGillDpVYt 283 (323)
T COG2515 237 LGLGSEADVLLSDDYHHPGYGKPNEEDIEAIKLLARLEGILLDPVYT 283 (323)
T ss_pred cCCCCCceEEEEecccCCccCCcCHHHHHHHHHHHHhhCcccccccc
Confidence 4443 223345667778889999999999999999999999999875
No 82
>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only]
Probab=99.97 E-value=7.4e-31 Score=225.23 Aligned_cols=261 Identities=21% Similarity=0.231 Sum_probs=203.7
Q ss_pred hhhHHHhhccCCCcceecccccCCCC--ceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEee-CCChHHH
Q 024040 6 EIKKDVTELIGHTPMVYLNNVVDGCV--ARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIEL-TSGNTGI 82 (273)
Q Consensus 6 ~~~~~i~~~~~~TPl~~~~~l~~~~g--~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~-ssGN~g~ 82 (273)
++.+.....-++|||++..+|.+.++ ++||+|.|...||||||...|......+...|. .. ++|- ..|.||.
T Consensus 67 Ev~e~Y~~~gRPTPL~RA~~LE~~L~tparIYyK~Eg~tptGSHKiNTAlAqaYyak~eg~----~r-l~TETGAGQWGs 141 (432)
T COG1350 67 EVREAYLQIGRPTPLIRAKNLEEALGTPARIYYKYEGVTPTGSHKINTALAQAYYAKKEGA----KR-LTTETGAGQWGS 141 (432)
T ss_pred HHHHHHHHhCCCCchhhhhhHHHHhCCCcEEEEEecccCCCCCCCcchHHHHHHHHHhcCc----ee-eecccCCchHHH
Confidence 45555666668999999999998776 799999999999999999999999999999986 44 5554 5599999
Q ss_pred HHHHHHHHcCCeEEEEecCCC---CHHHHHHHHHcCCEEEEeCCCCC----------------hhHHHHHHHHHHHhCCC
Q 024040 83 GLAFIAASRGYKLIIIMPSTY---SIERRIILRALGAEVYLADPAVG----------------FEGFVKKGEEILNRTPN 143 (273)
Q Consensus 83 a~A~~a~~~g~~~~i~~p~~~---~~~~~~~~~~~Ga~v~~~~~~~~----------------~~~~~~~a~~~~~~~~~ 143 (273)
|++++|+.+|++|+|||-... .+.+..+|+.+||+|+..+.+.+ .-=++..|.+.+-++++
T Consensus 142 AlslA~alf~lk~~V~Mvr~Sy~qKpyRk~lM~~yGa~V~pSPS~~Te~Grk~l~e~p~hPGSLGIAISEAiE~al~~~~ 221 (432)
T COG1350 142 ALSLAAALFGLKATVFMVRVSYYQKPYRKYLMELYGAEVVPSPSELTEFGRKILKEDPDHPGSLGIAISEAIEYALKNEN 221 (432)
T ss_pred HHHHHHHHhCceeEEEEEehhhhcchHHHHHHHHhCCeecCCCcchhHHHHHHHhcCCCCCchhHHHHHHHHHHHHhCCC
Confidence 999999999999999997632 45678899999999998764321 11266777777777666
Q ss_pred eEeeCCCCCCcchHhhhhchHHHHHHhh---CCCcCEEEEecCCCccHHHHHHHHHhh---C-CCcEEEEEecCCCcccc
Q 024040 144 GYILGQFENPANPEIHYETTGPEIWNDS---GGKVDAFIAGIGTGGTVTGAGRFLKEK---N-PNIKVYGIEPSESAVLN 216 (273)
Q Consensus 144 ~~~~~~~~~~~~~~~g~~t~~~Ei~~q~---~~~~d~iv~p~G~Gg~~~Gi~~~~k~~---~-~~~~vigVe~~~~~~~~ 216 (273)
..|....--.... .|+..+|.|..+|+ ++.||++|-+||+|++++|+..-|-.. + ...++|+|+|..|+.+.
T Consensus 222 ~kY~lGSVlnhvl-lhQTViGlEakkQle~~~e~PDv~igcvGGGSNfag~~yPfi~d~l~g~~~~~fiAvep~a~P~lT 300 (432)
T COG1350 222 TKYSLGSVLNHVL-LHQTVIGLEAKKQLEQAGEDPDVIIGCVGGGSNFAGLTYPFIGDKLRGKKETRFIAVEPKACPKLT 300 (432)
T ss_pred ceecchhHHHHHH-HHHHHHhHHHHHHHHhcCCCCCEEEEeccCCCccccccchhhhhhhcCCceeEEEEeCCccCCccc
Confidence 6665444333334 59999999996665 567999999999999999999887432 2 23899999999999987
Q ss_pred CCCCC----------C-ccccccCCCCCccccc-----------------ccCCCeEEEeCHHHHHHHHHHHHHHcCcee
Q 024040 217 GGQPG----------K-HLIQGIGAGVIPPVLD-----------------VAMLDEVITVSSEEAIETSKLLALKEGLLR 268 (273)
Q Consensus 217 ~~~~~----------~-~~~~glg~~~~~~~~~-----------------~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~ 268 (273)
.|... + -.+-.||..++|+.+. +..+-+.+.++.+|+++|.+.|++.|||+.
T Consensus 301 ~GeY~YD~gDtagltPllKMyTlGhd~vpPpihAgGLRYHG~aPtls~L~~~Giv~a~ay~Q~Evfeaa~lFa~~EGiVP 380 (432)
T COG1350 301 KGEYRYDFGDTAGLTPLLKMYTLGHDYVPPPIHAGGLRYHGVAPTLSLLVKEGIVEARAYDQEEVFEAAVLFARTEGIVP 380 (432)
T ss_pred cceeeccCCchhccchhhhhhccCCCccCCCcccccccccCcChHHHHHHHcCcccceecChHHHHHHHHHHHHhcCCcc
Confidence 66431 1 1234566666655442 233447889999999999999999999999
Q ss_pred cccC
Q 024040 269 QLLY 272 (273)
Q Consensus 269 ~ps~ 272 (273)
.|.|
T Consensus 381 APEs 384 (432)
T COG1350 381 APES 384 (432)
T ss_pred CCcc
Confidence 9976
No 83
>PRK09225 threonine synthase; Validated
Probab=99.97 E-value=6.3e-30 Score=236.76 Aligned_cols=238 Identities=17% Similarity=0.120 Sum_probs=183.2
Q ss_pred CCcceecccccCCCCceEEEEeCCCCCCCchhhHHHHH---HHHHHHHcCCCCCCCeEEEeeCCChHHHHH-HHHHHHcC
Q 024040 17 HTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYS---MIKDAEDKGLITPGKTVLIELTSGNTGIGL-AFIAASRG 92 (273)
Q Consensus 17 ~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~---~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~-A~~a~~~g 92 (273)
.+||.+++ .++|+.--+++||||||||++.. ++.++.+ +. ...|+++||||+|.|+ |.++.+.|
T Consensus 88 ~~pl~~l~-------~~~~~lELfhGPT~sFKD~a~~~l~~~l~~a~~-~~----~~~Il~ATSGdtG~Aa~aaf~~~~g 155 (462)
T PRK09225 88 IAPLVQLD-------DNLYVLELFHGPTLAFKDFALQFLAQLLEYVLK-GE----KITILGATSGDTGSAAAEAFRGKPN 155 (462)
T ss_pred ccceEEeC-------CCceeHhhccCCccchhhhHHHHHHHHHHHHHh-CC----CcEEEEcCCCcHHHHHHHHHhCcCC
Confidence 47887764 26999999999999999999988 8888887 42 3459999999999998 78899999
Q ss_pred CeEEEEecCC-CCHHHHHHHHHc-CCEE--EEeCCCCChhHHHHHHHHHHHhC-----CCeEeeCCCCCCcchHhhhhch
Q 024040 93 YKLIIIMPST-YSIERRIILRAL-GAEV--YLADPAVGFEGFVKKGEEILNRT-----PNGYILGQFENPANPEIHYETT 163 (273)
Q Consensus 93 ~~~~i~~p~~-~~~~~~~~~~~~-Ga~v--~~~~~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~~~~~~~~g~~t~ 163 (273)
++|+|++|++ ++..+..+|..+ |++| +.|+ ++||+|...++++..+. -+++-.+.. |+..+ .||.++
T Consensus 156 i~~~V~~P~g~vs~~q~~Qm~t~~g~nv~vi~V~--G~fDD~q~~vk~~~~d~~~~~~~~l~saNSi-N~~Ri-~gQ~~y 231 (462)
T PRK09225 156 VRVVILYPKGKVSPVQEKQMTTLQGDNIHVVAVE--GNFDDCQALVKAAFNDEELKEKLKLSSANSI-NIGRL-LAQIVY 231 (462)
T ss_pred CEEEEEEcCCCCCHHHHHHHHhhcCCCeEEEEeC--CCHHHHHHHHHHHhhchhhhhcCceEEEecc-CHHHH-HHHHHH
Confidence 9999999985 999999999999 9987 4555 56999999988876541 144445554 88888 599999
Q ss_pred HHHHHHhhCC---CcCEEEEecCCCccHHHHHHHHHhhCCCcEEEEEecCCCccc----cCCCC-----CCccccccCCC
Q 024040 164 GPEIWNDSGG---KVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVL----NGGQP-----GKHLIQGIGAG 231 (273)
Q Consensus 164 ~~Ei~~q~~~---~~d~iv~p~G~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~----~~~~~-----~~~~~~glg~~ 231 (273)
++|+++|+.. .||+|+||+|+||++.|.+.+.+.-.|-+|+|+++. .++.+ ..|.. ..+.+.+|..+
T Consensus 232 yfea~~ql~~~~~~p~~~vVPtGnfgni~a~~~Ak~mGlpi~kli~A~n-~n~~l~~~~~~G~y~~~~~~~T~s~amdI~ 310 (462)
T PRK09225 232 YFYAYLQLGIEAGEKVNFSVPSGNFGNILAGYYAKKMGLPIKRLIVATN-ENDVLTRFLKTGVYDPRPTVATLSPAMDIS 310 (462)
T ss_pred HHHHHHHhccccCCCCEEEEECCcHHHHHHHHHHHHcCCCcceEEEEec-CChHHHHHHHcCCCccCCCCCCcCchhhcC
Confidence 9999999964 389999999999999999999444446679999983 33332 23322 23344444443
Q ss_pred CCcccccc---------------------cCCC---------------eEEEeCHHHHHHHHHHHHHHcCceecccC
Q 024040 232 VIPPVLDV---------------------AMLD---------------EVITVSSEEAIETSKLLALKEGLLRQLLY 272 (273)
Q Consensus 232 ~~~~~~~~---------------------~~~d---------------~~v~v~d~e~~~a~~~l~~~eGi~~~ps~ 272 (273)
. |.++.+ +.-. ..+.|+|+|+.++++.+++++|++++|++
T Consensus 311 ~-psn~eR~l~~~~~~~~~~v~~~m~~l~~~gg~~~~~~~~~~~~~~f~a~~vsD~ei~~ai~~~~~~~G~~~dPht 386 (462)
T PRK09225 311 V-SSNFERLLFDLLGRDAAAVEELMEDLEEKGEYDLSDEELAALREDFSAGSVSDEETLATIREVYEEYGYLIDPHT 386 (462)
T ss_pred C-CCcHHHHHHHhcCCcHHHHHHHHHHHHHcCCcccCHHHHHHhhhcceEEEECHHHHHHHHHHHHHhCCEEECchH
Confidence 2 333222 0011 56889999999999999999999999986
No 84
>cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis. The conversion of O-phosphohomoserine into threonine and inorganic phosphate is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD includes members from higher plants, cyanobacteria, archaebacteria and eubacterial groups. This CD, Thr-synth_2, includes enzymes from fungi and eubacterial groups, as well as, metazoan threonine synthase-like proteins.
Probab=99.97 E-value=6.5e-29 Score=230.14 Aligned_cols=240 Identities=15% Similarity=0.091 Sum_probs=183.0
Q ss_pred CcceecccccCCCCceEEEEeCCCCCCCchhhHHHHHH---HHHHHHcCCCCCCCeEEEeeCCChHHHH-HHHHHHHcCC
Q 024040 18 TPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSM---IKDAEDKGLITPGKTVLIELTSGNTGIG-LAFIAASRGY 93 (273)
Q Consensus 18 TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~---~~~a~~~g~~~~g~~~vv~~ssGN~g~a-~A~~a~~~g~ 93 (273)
+||.++. .++|++-.+++||||||||++..+ +.++.++.. +...|+++||||+|.| ++.++.+.|+
T Consensus 88 ~pl~~l~-------~~~~~lELfhGPT~sFKD~a~~~l~~l~~~~~~~~~---~~~~Il~ATSGdTG~Aa~aaf~~~~gi 157 (460)
T cd01560 88 APLVQLG-------DNLYVLELFHGPTLAFKDMALQFLGRLLEYFLKRRN---ERITILVATSGDTGSAAIEGFRGKPNV 157 (460)
T ss_pred cceEEeC-------CCcEEeeeeeCCCcchHHhHHHHHHHHHHHHHHhcC---CCeEEEEcCCCcHHHHHHHHHhCcCCC
Confidence 7877764 269999999999999999999876 677765411 1456999999999999 4888999999
Q ss_pred eEEEEecCC-CCHHHHHHHHHcCC---EEEEeCCCCChhHHHHHHHHHHHhC-----CCeEeeCCCCCCcchHhhhhchH
Q 024040 94 KLIIIMPST-YSIERRIILRALGA---EVYLADPAVGFEGFVKKGEEILNRT-----PNGYILGQFENPANPEIHYETTG 164 (273)
Q Consensus 94 ~~~i~~p~~-~~~~~~~~~~~~Ga---~v~~~~~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~~~~~~~~g~~t~~ 164 (273)
+|+|++|++ +++.+..+|..+|+ +++.+++ +||+|...++++..+. -+++-.+.. |+.++ .+|.+++
T Consensus 158 ~v~Vl~P~g~vs~~Q~~Qm~t~g~~Nv~vi~V~G--~fDd~q~~vk~~~~d~~~~~~~~l~saNSi-N~~Ri-~~Q~~yy 233 (460)
T cd01560 158 DVVVLYPKGGVSPIQELQMTTLPADNVHVVAVEG--DFDDCQSLVKALFADEDFNKKLKLSSANSI-NWARI-LAQIVYY 233 (460)
T ss_pred EEEEEEcCCCCCHHHHHHHHhhCCCceEEEEEcC--CHHHHHHHHHHHhcChhhHhcceEEEEecc-CHHHH-HHHHHHH
Confidence 999999985 99999999999996 7888885 5999999888876542 134444443 77777 5999999
Q ss_pred HHHHHhhCC----CcCEEEEecCCCccHHHHHHHHHhhCCCcEEEEEecCCCcc---ccCCCC------CCccccccCCC
Q 024040 165 PEIWNDSGG----KVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAV---LNGGQP------GKHLIQGIGAG 231 (273)
Q Consensus 165 ~Ei~~q~~~----~~d~iv~p~G~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~---~~~~~~------~~~~~~glg~~ 231 (273)
+|+++|+.. .|+.|+||+|+||.+.|++.+.+--.|-.|+|+++.++... +..|.. ..+...+|..+
T Consensus 234 f~a~~ql~~~~~~~p~~~vVPtGnfgni~a~~~Ak~mGlpi~kli~a~n~n~il~~~~~~G~y~~~~~~~~T~spamdI~ 313 (460)
T cd01560 234 FYAYLQLLKRGEGEKVEFSVPTGNFGNILAGYYAKKMGLPIKKLIVATNENDVLRRFFKTGRYDRRESLKQTLSPAMDIL 313 (460)
T ss_pred HHHHHHhccccCCCCCEEEEECCcHHHHHHHHHHHHcCCCCccEEEEeCCChHHHHHHHcCCCcCCCCCCCCcCchhhcC
Confidence 999999963 58999999999999999999976555667999976554321 122322 12334444443
Q ss_pred CCcccccc---c--CCC-------------------------------eEEEeCHHHHHHHHHHHHHHcCceecccC
Q 024040 232 VIPPVLDV---A--MLD-------------------------------EVITVSSEEAIETSKLLALKEGLLRQLLY 272 (273)
Q Consensus 232 ~~~~~~~~---~--~~d-------------------------------~~v~v~d~e~~~a~~~l~~~eGi~~~ps~ 272 (273)
.|.++.+ . .-| ..+.|+|+|+.++++.+++++|++++|++
T Consensus 314 -~psn~eR~L~~l~~~~g~~~~~~m~~~~~~g~~~~~~~~l~~~~~~f~a~~vsD~ei~~~i~~~~~~~G~~vdPht 389 (460)
T cd01560 314 -KSSNFERLLFLLAGRDRTKVKMLMEEFEATGFLSLPKEELKKLREDFSSGSVSDEETLETIREVYEETGYLIDPHT 389 (460)
T ss_pred -CCCCHHHHHHHHhCCCHHHHHHHHHHHHhcCCEecCHHHHHhhhccceEEEECHHHHHHHHHHHHHhcCEEECchH
Confidence 2333211 0 001 46889999999999999999999999986
No 85
>KOG1395 consensus Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=99.96 E-value=9.5e-28 Score=207.78 Aligned_cols=255 Identities=22% Similarity=0.255 Sum_probs=180.6
Q ss_pred hccCCCcceecccccCCC--CceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHH
Q 024040 13 ELIGHTPMVYLNNVVDGC--VARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAAS 90 (273)
Q Consensus 13 ~~~~~TPl~~~~~l~~~~--g~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~ 90 (273)
-.-++|||++.+||.+.+ |.+||+|+|++||+||+|...|...+..+.+.|+ ...|.+...|.||.|+|.+|++
T Consensus 118 y~gRpspL~~AkRLte~~q~ga~IylKrEdlnh~GsHKiNnav~QallakrlGk----knviaETGAGQhGvatA~a~a~ 193 (477)
T KOG1395|consen 118 YLGRPSPLIRAKRLTEHCQTGARIYLKREDLNHTGSHKINNAVAQALLAKRLGK----KNVIAETGAGQHGVATATACAK 193 (477)
T ss_pred HcCCCchhHHHHHHHHHhCCCCEEEEEecCCCccccCCcccHHHHHHHHHHhcc----cceeeccCCCccchHHHHHHHH
Confidence 445679999999998765 5899999999999999999999999999999987 5545566779999999999999
Q ss_pred cCCeEEEEecCC---CCHHHHHHHHHcCCEEEEeCCC-CChhHHHHHHHHH-HHhCCCeEeeC-----CCCCCcchHhhh
Q 024040 91 RGYKLIIIMPST---YSIERRIILRALGAEVYLADPA-VGFEGFVKKGEEI-LNRTPNGYILG-----QFENPANPEIHY 160 (273)
Q Consensus 91 ~g~~~~i~~p~~---~~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~-~~~~~~~~~~~-----~~~~~~~~~~g~ 160 (273)
+|++|+|+|-.. ....++.+||.+||+|+.+... .+.+++-..+.++ ....+-..|+- ++--|.....-+
T Consensus 194 FGl~C~v~mgAed~~rqalnvfrmrllGAkV~pv~sGt~tLrda~sea~r~wvt~~ett~y~~gs~~gphp~pt~vr~fh 273 (477)
T KOG1395|consen 194 FGLDCTVYMGAEDYRRQALNVFRMRLLGAKVHPVTSGTRTLRDATSEAGRLWVTNSETTHYAAGSAIGPHPYPTVVRTFH 273 (477)
T ss_pred hCCceEEEechhHHHHHHHHHHHHHHhCceEeecCCCceehhcccchhhhhhhhhhheeeeeecccCCCCCcHHHHHHHH
Confidence 999999999753 3556889999999999998742 2344443333322 22222233331 111222333457
Q ss_pred hchHHHHHHhh----CCCcCEEEEecCCCccHHHHHHHHHhhCCCcEEEEEecCCCcc--------ccCCCCC-------
Q 024040 161 ETTGPEIWNDS----GGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAV--------LNGGQPG------- 221 (273)
Q Consensus 161 ~t~~~Ei~~q~----~~~~d~iv~p~G~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~--------~~~~~~~------- 221 (273)
.+|+.|-..|. +..||.||.++|+|++.+|+..-|... ..++.|+|+..+... +..++.+
T Consensus 274 svIg~Et~~Q~me~~g~~PD~vvaCvGGGSN~~Glf~pF~~d-k~v~~igveaagdg~dtp~hsatltagd~Gv~hG~~t 352 (477)
T KOG1395|consen 274 SVIGKETKIQQMEKFGKLPDAVVACVGGGSNSAGLFSPFIRD-KSVGMIGVEAAGDGVDTPKHSATLTAGDVGVFHGVTT 352 (477)
T ss_pred HHHhHHHHHHHHHHhCCCCCeEEEeccCCCccccccchhhcc-chhheeeeeecccccCCcchhceeeccccccccccee
Confidence 88888877665 346999999999999999999988764 347888888765431 2222221
Q ss_pred ------------C-ccccccCCCCC-ccc--ccccCCCeEEEeCHHHHHHHHHHHHHHcCceecccC
Q 024040 222 ------------K-HLIQGIGAGVI-PPV--LDVAMLDEVITVSSEEAIETSKLLALKEGLLRQLLY 272 (273)
Q Consensus 222 ------------~-~~~~glg~~~~-~~~--~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~~ps~ 272 (273)
+ ++..||...-+ |.. +.....-+++.|+|.|++++.++|++.|||+..+.+
T Consensus 353 y~lq~~dGqi~~phsIsAGLdYpGvgPels~~k~~grae~isitd~eclegfk~~srlEGIIPAlEs 419 (477)
T KOG1395|consen 353 YVLQDTDGQIFDPHSISAGLDYPGVGPELSHLKETGRAEFISITDAECLEGFKQLSRLEGIIPALES 419 (477)
T ss_pred eeeeccCCccccCCccccCCCCCCCChhHHHHHhcCceeEEecChHHHHHHHHHHHHhcccccCCch
Confidence 1 11122222111 211 112234489999999999999999999999987765
No 86
>COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism]
Probab=99.93 E-value=9.6e-25 Score=186.19 Aligned_cols=257 Identities=19% Similarity=0.224 Sum_probs=209.2
Q ss_pred hccCCCcceeccccc----CC----CCceEEEEeCCCCC-CCchhhHHHHHHHHH-----HHHcCCCCCCCe--------
Q 024040 13 ELIGHTPMVYLNNVV----DG----CVARIAAKLEMMQP-CSSVKDRIAYSMIKD-----AEDKGLITPGKT-------- 70 (273)
Q Consensus 13 ~~~~~TPl~~~~~l~----~~----~g~~l~~K~E~~~p-tGS~K~R~a~~~~~~-----a~~~g~~~~g~~-------- 70 (273)
.++-.+||++.+.+. ++ ...++|+|+|+.-| +||+|.||..+-+.. |++.|.+.-.+.
T Consensus 74 ~GiIES~lv~i~~mq~~Le~~Y~~~i~G~llLK~DshLpIsGSIKARGGIYEVL~hAE~LAle~Gll~~~DDYs~L~~~~ 153 (443)
T COG3048 74 GGIIESPLVEIPAMQKRLEKEYQQPIPGRLLLKKDSHLPISGSIKARGGIYEVLKHAEKLALEAGLLTLEDDYSILLSEE 153 (443)
T ss_pred CCeeccchhhhHHHHHHHHHHhcCCCCcceeeeccCCCCcccceeccccHHHHHHHHHHHHHhcCcccccchHHHhhcHH
Confidence 356678888876543 22 33589999999999 899999987776643 445665443211
Q ss_pred --------EEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCC
Q 024040 71 --------VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTP 142 (273)
Q Consensus 71 --------~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~ 142 (273)
.|...|+||.|.++....+.+|.++++-|..++.++|.+.+|+.|.+|+.... +|..+.+.-++-++..+
T Consensus 154 f~~FFs~ysIaVGSTGNLGlSIGI~sA~lGF~vtVHMSADAr~WKKd~LRs~gV~ViEYe~--DY~~AVeeGRk~a~~DP 231 (443)
T COG3048 154 FKDFFSRYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADARAWKKDKLRSHGVTVVEYEQ--DYGVAVEEGRKEAESDP 231 (443)
T ss_pred HHHHHHhheEeecccCccceehhhhhhhhcceEEEEecchHHHHHHHHHHhcCceEEEecc--hhhHHHHHhhhhhccCC
Confidence 57778999999999999999999999999999999999999999999999984 58899999999999888
Q ss_pred CeEeeCCCCCCcchHhhhhchHHHHHHhhCC--------CcCEEEEecCCCccHHHHHHHHHhhC-CCcEEEEEecCCCc
Q 024040 143 NGYILGQFENPANPEIHYETTGPEIWNDSGG--------KVDAFIAGIGTGGTVTGAGRFLKEKN-PNIKVYGIEPSESA 213 (273)
Q Consensus 143 ~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~--------~~d~iv~p~G~Gg~~~Gi~~~~k~~~-~~~~vigVe~~~~~ 213 (273)
..||++.-.+.... .||...+.-|..|++. .|-.|..|||-||.-.|++.++|... .++.++-+||..+|
T Consensus 232 ~c~FiDDE~S~~LF-LGYaVAa~Rlk~Q~d~~gi~vd~ehPLfVylPCGVGGgPGGVafGLKl~fgd~VhcfFaEPthsP 310 (443)
T COG3048 232 NCFFIDDENSRTLF-LGYAVAAQRLKKQFDEQGIVVDAEHPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSP 310 (443)
T ss_pred ceEEecccchhhhh-hhHHHHHHHHHHHHHhcCceecCCCceEEEeecCCCCCcchhhhhhHhhhcCceEEEEecCCCCh
Confidence 99999776555555 5999999999999852 36788899999999999999999765 56999999999999
Q ss_pred cccCCC---------------CCCccccccCCCCCcccc---cccCCCeEEEeCHHHHHHHHHHHHHHcCceecccC
Q 024040 214 VLNGGQ---------------PGKHLIQGIGAGVIPPVL---DVAMLDEVITVSSEEAIETSKLLALKEGLLRQLLY 272 (273)
Q Consensus 214 ~~~~~~---------------~~~~~~~glg~~~~~~~~---~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~~ps~ 272 (273)
++.-|. ...+.++|+..+..+..+ ....+|..++|+|+..++...+|++.||+.++||+
T Consensus 311 cMlLGv~tGlHe~ISVqdiGidn~TaADGLAVgRpSgfVgr~me~lL~G~~TvdD~~ly~lL~~L~~~e~~rlEPSa 387 (443)
T COG3048 311 CMLLGVYTGLHEQISVQDIGIDNLTAADGLAVGRPSGFVGRAMERLLDGYYTVDDQTLYDLLGWLAQEEGIRLEPSA 387 (443)
T ss_pred HHHHhhhhccccceeeEeecccccccccceeecCccchHHHHHHHHhCCcEEechHHHHHHHHHHHHhcCcccCchh
Confidence 875221 123556788877544332 35678999999999999999999999999999985
No 87
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=91.75 E-value=1.5 Score=35.64 Aligned_cols=101 Identities=19% Similarity=0.175 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHcCCeE-EEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHh
Q 024040 80 TGIGLAFIAASRGYKL-IIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEI 158 (273)
Q Consensus 80 ~g~a~A~~a~~~g~~~-~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 158 (273)
-|..+.++++.+|.++ .-+.+.+.-..-++.+...|-+|.+++++ -+...+.+..+.++.++.-.+..++-+... .
T Consensus 12 DG~~i~~~~~~~g~~~~~rv~g~dl~~~l~~~~~~~~~~ifllG~~--~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~-~ 88 (172)
T PF03808_consen 12 DGMPIVWAARLLGRPLPERVTGSDLFPDLLRRAEQRGKRIFLLGGS--EEVLEKAAANLRRRYPGLRIVGYHHGYFDE-E 88 (172)
T ss_pred CCHHHHHHHHHcCCCCCcccCHHHHHHHHHHHHHHcCCeEEEEeCC--HHHHHHHHHHHHHHCCCeEEEEecCCCCCh-h
Confidence 4678899999999886 22222222334466667788999999865 234455566677777655444333222221 1
Q ss_pred hhhchHHHHHHhhC-CCcCEEEEecCCCcc
Q 024040 159 HYETTGPEIWNDSG-GKVDAFIAGIGTGGT 187 (273)
Q Consensus 159 g~~t~~~Ei~~q~~-~~~d~iv~p~G~Gg~ 187 (273)
-.. +|++++. ..||.|++..|+---
T Consensus 89 ~~~----~i~~~I~~~~pdiv~vglG~PkQ 114 (172)
T PF03808_consen 89 EEE----AIINRINASGPDIVFVGLGAPKQ 114 (172)
T ss_pred hHH----HHHHHHHHcCCCEEEEECCCCHH
Confidence 222 3333332 368999999998643
No 88
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=88.18 E-value=4.2 Score=36.62 Aligned_cols=54 Identities=19% Similarity=0.257 Sum_probs=41.5
Q ss_pred CCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 024040 65 ITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (273)
Q Consensus 65 ~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 119 (273)
..+|.+ |+...+|..|...+..++.+|.+++++.+...++.|++.++.+|++.+
T Consensus 170 ~~~g~~-vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v 223 (355)
T cd08230 170 TWNPRR-ALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYV 223 (355)
T ss_pred cCCCCE-EEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEe
Confidence 345666 555567999999999999999986666554446788999999999864
No 89
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=86.33 E-value=15 Score=30.80 Aligned_cols=50 Identities=34% Similarity=0.440 Sum_probs=41.5
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeC
Q 024040 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLAD 122 (273)
Q Consensus 72 vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~ 122 (273)
+|+..+|+.|..++.+....+.++.+++.+. +....+.++..|++++..+
T Consensus 2 ~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~-~~~~~~~l~~~g~~vv~~d 51 (233)
T PF05368_consen 2 LVTGATGNQGRSVVRALLSAGFSVRALVRDP-SSDRAQQLQALGAEVVEAD 51 (233)
T ss_dssp EEETTTSHHHHHHHHHHHHTTGCEEEEESSS-HHHHHHHHHHTTTEEEES-
T ss_pred EEECCccHHHHHHHHHHHhCCCCcEEEEecc-chhhhhhhhcccceEeecc
Confidence 5777899999999999988999999999865 4456777888999998655
No 90
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=85.95 E-value=8.5 Score=31.13 Aligned_cols=120 Identities=22% Similarity=0.206 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHcCCeEEEEecC-CCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHh
Q 024040 80 TGIGLAFIAASRGYKLIIIMPS-TYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEI 158 (273)
Q Consensus 80 ~g~a~A~~a~~~g~~~~i~~p~-~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 158 (273)
-|..+.++++.+|.+..--++. +.-..-++.+...+.+|.++++. -+...+.++.+.++.++...+..++.+....
T Consensus 10 DG~~l~~~~~~~~~~~~~r~~g~dl~~~ll~~~~~~~~~v~llG~~--~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~- 86 (171)
T cd06533 10 DGIGVVWAARLLGGPLPERVTGSDLMPALLELAAQKGLRVFLLGAK--PEVLEKAAERLRARYPGLKIVGYHHGYFGPE- 86 (171)
T ss_pred CcHHHHHHHHHcCCCCCcccCcHHHHHHHHHHHHHcCCeEEEECCC--HHHHHHHHHHHHHHCCCcEEEEecCCCCChh-
Confidence 3578899999999882222221 11123355556678999999864 2334444456666666654443222222221
Q ss_pred hhhchHHHHHHhhC-CCcCEEEEecCCCccHHHHHHHHHhhCCCcEEEEE
Q 024040 159 HYETTGPEIWNDSG-GKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGI 207 (273)
Q Consensus 159 g~~t~~~Ei~~q~~-~~~d~iv~p~G~Gg~~~Gi~~~~k~~~~~~~vigV 207 (273)
. -.++.+++. ..||.|++++|+---=.= ....+...+..-+++|
T Consensus 87 ~----~~~i~~~I~~~~pdiv~vglG~PkQE~~-~~~~~~~l~~~v~~~v 131 (171)
T cd06533 87 E----EEEIIERINASGADILFVGLGAPKQELW-IARHKDRLPVPVAIGV 131 (171)
T ss_pred h----HHHHHHHHHHcCCCEEEEECCCCHHHHH-HHHHHHHCCCCEEEEe
Confidence 1 112444442 359999999997543221 2223333344445554
No 91
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=85.93 E-value=6.8 Score=34.01 Aligned_cols=59 Identities=22% Similarity=0.247 Sum_probs=41.7
Q ss_pred HHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 024040 59 AEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (273)
Q Consensus 59 a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 120 (273)
+.+.....++++ |+....|..|..++..|+.+|.+.++++ ..++.|++..+.+|++.+.
T Consensus 112 al~~~~~~~g~~-VlV~G~G~vG~~~~~~ak~~G~~~Vi~~--~~~~~r~~~a~~~Ga~~~i 170 (280)
T TIGR03366 112 ALEAAGDLKGRR-VLVVGAGMLGLTAAAAAAAAGAARVVAA--DPSPDRRELALSFGATALA 170 (280)
T ss_pred HHHhccCCCCCE-EEEECCCHHHHHHHHHHHHcCCCEEEEE--CCCHHHHHHHHHcCCcEec
Confidence 333333446766 5555678899999999999999855555 3456788888999996543
No 92
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=85.78 E-value=12 Score=33.48 Aligned_cols=58 Identities=19% Similarity=0.302 Sum_probs=41.7
Q ss_pred HHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEe
Q 024040 60 EDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLA 121 (273)
Q Consensus 60 ~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~ 121 (273)
.....+.+|.+ |+....|..|.+++..|+.+|.+++++ ..++.|++.++.+|++.+..
T Consensus 159 ~~~~~~~~g~~-VlV~G~G~vG~~a~~~a~~~G~~vi~~---~~~~~~~~~~~~~Ga~~~i~ 216 (349)
T TIGR03201 159 AVQAGLKKGDL-VIVIGAGGVGGYMVQTAKAMGAAVVAI---DIDPEKLEMMKGFGADLTLN 216 (349)
T ss_pred HHhcCCCCCCE-EEEECCCHHHHHHHHHHHHcCCeEEEE---cCCHHHHHHHHHhCCceEec
Confidence 33445677777 555555999999999999999974433 23567888889999975543
No 93
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=84.18 E-value=12 Score=33.69 Aligned_cols=57 Identities=26% Similarity=0.465 Sum_probs=43.4
Q ss_pred cCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEe
Q 024040 62 KGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLA 121 (273)
Q Consensus 62 ~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~ 121 (273)
...+++|++-+|...+|.-|..+.-.|+.+|...++.+. +..|.+.++.+||+.+..
T Consensus 137 ~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~---s~~k~~~~~~lGAd~vi~ 193 (326)
T COG0604 137 RAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVS---SSEKLELLKELGADHVIN 193 (326)
T ss_pred hcCCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEec---CHHHHHHHHhcCCCEEEc
Confidence 466778888788888898999988999999984343332 346677999999977664
No 94
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=83.65 E-value=17 Score=31.95 Aligned_cols=58 Identities=24% Similarity=0.271 Sum_probs=42.9
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEe
Q 024040 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLA 121 (273)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~ 121 (273)
+...+.+|.+-+|...+|..|.++...|+.+|.+++++. .+..+.+.++.+|++-+.-
T Consensus 137 ~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~---~s~~~~~~l~~~Ga~~vi~ 194 (329)
T cd08294 137 EICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCA---GSDDKVAWLKELGFDAVFN 194 (329)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEe---CCHHHHHHHHHcCCCEEEe
Confidence 345567777755665678899999999999999865543 2457888889999965443
No 95
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=83.51 E-value=19 Score=33.24 Aligned_cols=56 Identities=23% Similarity=0.275 Sum_probs=42.0
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 024040 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (273)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 119 (273)
+...+.+|++ |+...+|.-|..++..|+.+|.+.+++.. ..+.+++..+.+|++.+
T Consensus 179 ~~~~~~~g~~-VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d--~~~~r~~~a~~~Ga~~v 234 (393)
T TIGR02819 179 VTAGVGPGST-VYIAGAGPVGLAAAASAQLLGAAVVIVGD--LNPARLAQARSFGCETV 234 (393)
T ss_pred HhcCCCCCCE-EEEECCCHHHHHHHHHHHHcCCceEEEeC--CCHHHHHHHHHcCCeEE
Confidence 3445677777 44477788999999999999998766442 24678999999999853
No 96
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=83.37 E-value=2.7 Score=38.18 Aligned_cols=86 Identities=22% Similarity=0.179 Sum_probs=51.9
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCC-CChhHHHHHHHH-HHHhCCCeEeeC
Q 024040 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPA-VGFEGFVKKGEE-ILNRTPNGYILG 148 (273)
Q Consensus 71 ~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~-~~~~~~~~~~~~ 148 (273)
.++..+||..|+-+|+.+-.++-.-.|++|.-+...-...+...|+++++++-+ .++.=..+...+ +.++..-.+.++
T Consensus 42 ~~~~~~sgt~Al~~al~~l~~~~gdeVi~p~~t~~~~~~ai~~~G~~pv~~Di~~~~~~id~~~~~~~i~~~t~ai~~~h 121 (363)
T PF01041_consen 42 YAVAVSSGTSALHLALRALGLGPGDEVIVPAYTFPATASAILWAGAEPVFVDIDPETLNIDPEALEKAITPKTKAILVVH 121 (363)
T ss_dssp EEEEESSHHHHHHHHHHHTTGGTTSEEEEESSS-THHHHHHHHTT-EEEEE-BETTTSSB-HHHHHHHHHTTEEEEEEE-
T ss_pred eEEEeCChhHHHHHHHHhcCCCcCceEecCCCcchHHHHHHHHhccEEEEEeccCCcCCcCHHHHHHHhccCccEEEEec
Confidence 488899999999999888433333788899988889999999999999999854 232211222222 222222234456
Q ss_pred CCCCCcch
Q 024040 149 QFENPANP 156 (273)
Q Consensus 149 ~~~~~~~~ 156 (273)
.+.++..+
T Consensus 122 ~~G~~~d~ 129 (363)
T PF01041_consen 122 LFGNPADM 129 (363)
T ss_dssp GGGB---H
T ss_pred CCCCcccH
Confidence 66666654
No 97
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=82.36 E-value=2.9 Score=33.25 Aligned_cols=42 Identities=19% Similarity=0.215 Sum_probs=34.0
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCC
Q 024040 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGA 116 (273)
Q Consensus 72 vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga 116 (273)
|....+||+|.|+|...+..|.+++++.++. ...+.++..+-
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~~---~~~~~i~~~~~ 43 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGHEVTLWGRDE---EQIEEINETRQ 43 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTEEEEEETSCH---HHHHHHHHHTS
T ss_pred EEEECcCHHHHHHHHHHHHcCCEEEEEeccH---HHHHHHHHhCC
Confidence 6678999999999999999999999998753 55666665443
No 98
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=82.26 E-value=13 Score=33.07 Aligned_cols=87 Identities=24% Similarity=0.297 Sum_probs=60.9
Q ss_pred eEEEEeCCCCC-----CCchhhHHHHHHHHHHHHcCCCCCCCeEEEee-CCChHHHHHHHHHHHcCCeEEEEecCCCC-H
Q 024040 33 RIAAKLEMMQP-----CSSVKDRIAYSMIKDAEDKGLITPGKTVLIEL-TSGNTGIGLAFIAASRGYKLIIIMPSTYS-I 105 (273)
Q Consensus 33 ~l~~K~E~~~p-----tGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~-ssGN~g~a~A~~a~~~g~~~~i~~p~~~~-~ 105 (273)
+-++|.++.-| |-+.---.|+-|+.+-.+-. +|+. |+-- +.+--|+++--.|+.+|++.+-++++... +
T Consensus 124 ~~Li~vd~~~pl~~AAT~~VNP~TAyrmL~dfv~L~---~GD~-vIQNganS~VG~~ViQlaka~GiktinvVRdR~~ie 199 (354)
T KOG0025|consen 124 SDLIKVDKDIPLASAATLSVNPCTAYRMLKDFVQLN---KGDS-VIQNGANSGVGQAVIQLAKALGIKTINVVRDRPNIE 199 (354)
T ss_pred cceEEcCCcCChhhhheeccCchHHHHHHHHHHhcC---CCCe-eeecCcccHHHHHHHHHHHHhCcceEEEeecCccHH
Confidence 57788887555 44445556777787766533 4554 5533 22446677788899999999999987554 3
Q ss_pred HHHHHHHHcCCEEEEeCC
Q 024040 106 ERRIILRALGAEVYLADP 123 (273)
Q Consensus 106 ~~~~~~~~~Ga~v~~~~~ 123 (273)
+-.++++.+||+-++.+.
T Consensus 200 el~~~Lk~lGA~~ViTee 217 (354)
T KOG0025|consen 200 ELKKQLKSLGATEVITEE 217 (354)
T ss_pred HHHHHHHHcCCceEecHH
Confidence 456788999999988763
No 99
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=81.89 E-value=23 Score=28.65 Aligned_cols=104 Identities=17% Similarity=0.117 Sum_probs=64.8
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCC
Q 024040 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQF 150 (273)
Q Consensus 71 ~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 150 (273)
+|..-..|+-|+++|..++.+|++++.+-|...+.. .....+.+. . ++++. .++. +...++--
T Consensus 38 tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~---~~~~~~~~~--~----~l~el-------l~~a-Div~~~~p 100 (178)
T PF02826_consen 38 TVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEE---GADEFGVEY--V----SLDEL-------LAQA-DIVSLHLP 100 (178)
T ss_dssp EEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHH---HHHHTTEEE--S----SHHHH-------HHH--SEEEE-SS
T ss_pred EEEEEEEcCCcCeEeeeeecCCceeEEecccCChhh---hccccccee--e----ehhhh-------cchh-hhhhhhhc
Confidence 488889999999999999999999999887643222 233444422 1 13332 2332 44443222
Q ss_pred CCCcchHhhhhchHHHHHHhhCCCcCEEEEecCCCccHHH--HHHHHHh
Q 024040 151 ENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGGTVTG--AGRFLKE 197 (273)
Q Consensus 151 ~~~~~~~~g~~t~~~Ei~~q~~~~~d~iv~p~G~Gg~~~G--i~~~~k~ 197 (273)
.++. -...+..|.++++ +++.+++-++-|+++-- +..++++
T Consensus 101 lt~~----T~~li~~~~l~~m--k~ga~lvN~aRG~~vde~aL~~aL~~ 143 (178)
T PF02826_consen 101 LTPE----TRGLINAEFLAKM--KPGAVLVNVARGELVDEDALLDALES 143 (178)
T ss_dssp SSTT----TTTSBSHHHHHTS--TTTEEEEESSSGGGB-HHHHHHHHHT
T ss_pred cccc----cceeeeeeeeecc--ccceEEEeccchhhhhhhHHHHHHhh
Confidence 2332 2356788889998 47899999999998753 4444443
No 100
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=81.31 E-value=21 Score=29.63 Aligned_cols=66 Identities=24% Similarity=0.174 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHHHc---CCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHH-HcCCEE
Q 024040 49 DRIAYSMIKDAEDK---GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILR-ALGAEV 118 (273)
Q Consensus 49 ~R~a~~~~~~a~~~---g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~-~~Ga~v 118 (273)
-+|..+.+..+.+. +.-..|. +++....||.|..+|......|.+++++ . ....+++.+. .+|++.
T Consensus 6 g~Gv~~~~~~~~~~~~~~~~l~gk-~v~I~G~G~vG~~~A~~L~~~G~~Vvv~-D--~~~~~~~~~~~~~g~~~ 75 (200)
T cd01075 6 AYGVFLGMKAAAEHLLGTDSLEGK-TVAVQGLGKVGYKLAEHLLEEGAKLIVA-D--INEEAVARAAELFGATV 75 (200)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCC-EEEEECCCHHHHHHHHHHHHCCCEEEEE-c--CCHHHHHHHHHHcCCEE
Confidence 46777777777655 3323333 4888888999999999999999987743 2 2334444443 346553
No 101
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=80.49 E-value=18 Score=29.57 Aligned_cols=97 Identities=15% Similarity=0.164 Sum_probs=53.9
Q ss_pred HHHHHHHHHHcCCeEEEEecC-CCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhh
Q 024040 81 GIGLAFIAASRGYKLIIIMPS-TYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIH 159 (273)
Q Consensus 81 g~a~A~~a~~~g~~~~i~~p~-~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g 159 (273)
|..+.++++.+|.+..--++. +.-..-++.....|..|.++++. -+...+.++.+.++.++..... ++.+.... -
T Consensus 13 G~~iv~~~r~~g~~~~~Rv~G~dl~~~l~~~~~~~~~~vfllG~~--~~v~~~~~~~l~~~yP~l~i~g-~~g~f~~~-~ 88 (177)
T TIGR00696 13 GIGVVWGLKLLGYPQQSRVAGPDLMEELCQRAGKEKLPIFLYGGK--PDVLQQLKVKLIKEYPKLKIVG-AFGPLEPE-E 88 (177)
T ss_pred cHHHHHHHHHcCCCCCCccChHHHHHHHHHHHHHcCCeEEEECCC--HHHHHHHHHHHHHHCCCCEEEE-ECCCCChH-H
Confidence 567889999998763211111 11123344455678899999864 2344555666667766544332 12222111 1
Q ss_pred hhchHHHHHHhhC-CCcCEEEEecCCC
Q 024040 160 YETTGPEIWNDSG-GKVDAFIAGIGTG 185 (273)
Q Consensus 160 ~~t~~~Ei~~q~~-~~~d~iv~p~G~G 185 (273)
-.+|.+++. ..+|.++|+.|+=
T Consensus 89 ----~~~i~~~I~~s~~dil~VglG~P 111 (177)
T TIGR00696 89 ----RKAALAKIARSGAGIVFVGLGCP 111 (177)
T ss_pred ----HHHHHHHHHHcCCCEEEEEcCCc
Confidence 123444442 3599999999864
No 102
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=78.90 E-value=31 Score=30.42 Aligned_cols=58 Identities=26% Similarity=0.340 Sum_probs=43.0
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEe
Q 024040 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLA 121 (273)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~ 121 (273)
+.+.+++|.+-+|...+|--|.+++..|+.+|.++++... +..+.+.++.+|++.+.-
T Consensus 132 ~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~---s~~~~~~~~~lGa~~vi~ 189 (325)
T TIGR02825 132 EICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAG---SDEKVAYLKKLGFDVAFN 189 (325)
T ss_pred HHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCEEEe
Confidence 4456778877455555788999999999999998665543 457888889999965543
No 103
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=78.57 E-value=26 Score=31.51 Aligned_cols=57 Identities=23% Similarity=0.211 Sum_probs=41.1
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 024040 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (273)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 120 (273)
+.+.+++|.+.+|. .+|--|.+++..|+.+|.+.++.+. .++.|++.++.+|++-++
T Consensus 170 ~~~~~~~g~~VlV~-G~g~vG~~a~~~ak~~G~~~Vi~~~--~~~~~~~~~~~~Ga~~~i 226 (358)
T TIGR03451 170 NTGGVKRGDSVAVI-GCGGVGDAAIAGAALAGASKIIAVD--IDDRKLEWAREFGATHTV 226 (358)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEc--CCHHHHHHHHHcCCceEE
Confidence 44556778774554 5788999999999999987454443 246788888999996443
No 104
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=78.57 E-value=27 Score=31.57 Aligned_cols=57 Identities=19% Similarity=0.389 Sum_probs=40.9
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 024040 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (273)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 120 (273)
+...+++|.+.+| ..+|..|..++..|+.+|.+.++++. .++.|++.++.+|++.+.
T Consensus 185 ~~~~i~~g~~VlV-~G~G~vG~~a~~lak~~G~~~Vi~~~--~~~~r~~~a~~~Ga~~~i 241 (371)
T cd08281 185 NTAGVRPGQSVAV-VGLGGVGLSALLGAVAAGASQVVAVD--LNEDKLALARELGATATV 241 (371)
T ss_pred hccCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCCcEEEEc--CCHHHHHHHHHcCCceEe
Confidence 3455677777455 55788999999999999995444443 356788888999996544
No 105
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=78.10 E-value=23 Score=31.64 Aligned_cols=59 Identities=17% Similarity=0.144 Sum_probs=41.1
Q ss_pred HHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEe
Q 024040 60 EDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLA 121 (273)
Q Consensus 60 ~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~ 121 (273)
.++....+|++ |+...+|..|++.+..|+.+|.+.++++. .++.+++..+.+||+.+.-
T Consensus 162 l~~~~~~~g~~-VlV~G~G~vG~~aiqlak~~G~~~Vi~~~--~~~~~~~~a~~lGa~~vi~ 220 (343)
T PRK09880 162 AHQAGDLQGKR-VFVSGVGPIGCLIVAAVKTLGAAEIVCAD--VSPRSLSLAREMGADKLVN 220 (343)
T ss_pred HHhcCCCCCCE-EEEECCCHHHHHHHHHHHHcCCcEEEEEe--CCHHHHHHHHHcCCcEEec
Confidence 33333446666 44455689999999999999986554443 2467888889999976543
No 106
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=77.82 E-value=23 Score=30.90 Aligned_cols=68 Identities=16% Similarity=0.160 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHcCCCCCCCeEEEee-CCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcC-CEEEEeC
Q 024040 50 RIAYSMIKDAEDKGLITPGKTVLIEL-TSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALG-AEVYLAD 122 (273)
Q Consensus 50 R~a~~~~~~a~~~g~~~~g~~~vv~~-ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~G-a~v~~~~ 122 (273)
+|....+.++.+.|. +. ++.. --=.+...+-.+|+++|++.+.+++++++..+++.+.... .-|+.+.
T Consensus 109 ~Gie~F~~~~~~~Gv----dG-livpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a~GFiY~vs 178 (265)
T COG0159 109 YGIEKFLRRAKEAGV----DG-LLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPDERLKKIAEAASGFIYYVS 178 (265)
T ss_pred hhHHHHHHHHHHcCC----CE-EEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEe
Confidence 566667778887775 33 4443 3344666777788888888888888888888888877765 5566554
No 107
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=77.82 E-value=32 Score=30.54 Aligned_cols=57 Identities=23% Similarity=0.250 Sum_probs=42.4
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH-cCCEEEE
Q 024040 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRA-LGAEVYL 120 (273)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~-~Ga~v~~ 120 (273)
+...+++|++-+|...+|.-|.+++..|+.+|.++++..+ +..|.+.++. +|++-+.
T Consensus 145 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~---~~~~~~~~~~~lGa~~vi 202 (338)
T cd08295 145 EVCKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAG---SDEKVDLLKNKLGFDDAF 202 (338)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHhcCCceeE
Confidence 3455778888666666799999999999999998555433 4578888887 9996443
No 108
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=77.69 E-value=45 Score=31.76 Aligned_cols=124 Identities=13% Similarity=0.134 Sum_probs=73.9
Q ss_pred HHHHHHHHcCCeEEEEe-----------cCCCCHHHHHHHHHcCCEEEEeCCCC---Ch-hHHHHHHHHHHHhCCCeE--
Q 024040 83 GLAFIAASRGYKLIIIM-----------PSTYSIERRIILRALGAEVYLADPAV---GF-EGFVKKGEEILNRTPNGY-- 145 (273)
Q Consensus 83 a~A~~a~~~g~~~~i~~-----------p~~~~~~~~~~~~~~Ga~v~~~~~~~---~~-~~~~~~a~~~~~~~~~~~-- 145 (273)
-+..+|+.+|+++.+.. |..+....+......|++.+....+. .| .++.+...+.+++-+..+
T Consensus 261 ~ii~aaraag~pvi~atqmLeSM~~~p~PTRAe~~dv~~~v~~G~d~v~ls~eta~G~yP~~~v~~m~~I~~~~E~~~~~ 340 (473)
T TIGR01064 261 KMIRKCNRAGKPVITATQMLDSMIKNPRPTRAEVSDVANAILDGTDAVMLSGETAKGKYPVEAVKMMAKIAKEAEKALAY 340 (473)
T ss_pred HHHHHHHHcCCCEEEEChhhhhhhcCCCCCcccHHHHHHHHHcCCCEEEEcchhhcCCCHHHHHHHHHHHHHHHHhccch
Confidence 34667889999988765 33345566777777899998876431 22 355555555544322111
Q ss_pred ---eeCCCC-CC--cchHhhhhchHHHHHHhhCCCcCEEEEecCCCccHHHHHHHHHhhCCCcEEEEEecCCC
Q 024040 146 ---ILGQFE-NP--ANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSES 212 (273)
Q Consensus 146 ---~~~~~~-~~--~~~~~g~~t~~~Ei~~q~~~~~d~iv~p~G~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~ 212 (273)
|-.+.. .. ..........+.++.+.+ +.++||+..-+|.++--+++ ..|.+.|+++.|...
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~ia~~a~~~a~~~--~akaIVv~T~SG~TA~~vSr----~rp~~PIiAvT~~~~ 407 (473)
T TIGR01064 341 LTNFNDRKNSDPKPSTITEAIALSAVEAAEKL--DAKAIVVLTESGRTARLLSK----YRPNAPIIAVTPNER 407 (473)
T ss_pred hhhhhhhhcccccCCChHHHHHHHHHHHHhhc--CCCEEEEEcCChHHHHHHHh----hCCCCCEEEEcCCHH
Confidence 101100 00 011123344455666666 47899999999998765554 478899999987544
No 109
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=77.58 E-value=16 Score=33.04 Aligned_cols=61 Identities=26% Similarity=0.300 Sum_probs=45.8
Q ss_pred HHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeC
Q 024040 58 DAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLAD 122 (273)
Q Consensus 58 ~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~ 122 (273)
+++.+-.+.||+. |....-|-.|.....+|+.+|.+++.+- .++.|++..+.+||+.+...
T Consensus 157 ~alk~~~~~pG~~-V~I~G~GGlGh~avQ~Aka~ga~Via~~---~~~~K~e~a~~lGAd~~i~~ 217 (339)
T COG1064 157 RALKKANVKPGKW-VAVVGAGGLGHMAVQYAKAMGAEVIAIT---RSEEKLELAKKLGADHVINS 217 (339)
T ss_pred eehhhcCCCCCCE-EEEECCcHHHHHHHHHHHHcCCeEEEEe---CChHHHHHHHHhCCcEEEEc
Confidence 4555556788877 7777777677777777888897777774 46788888899999887764
No 110
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=77.31 E-value=13 Score=27.88 Aligned_cols=39 Identities=26% Similarity=0.267 Sum_probs=23.6
Q ss_pred HHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeC
Q 024040 81 GIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLAD 122 (273)
Q Consensus 81 g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~ 122 (273)
|+..+..|+.+|.+++++.+ ++.|++.++.+||+.+...
T Consensus 3 G~~a~q~ak~~G~~vi~~~~---~~~k~~~~~~~Ga~~~~~~ 41 (130)
T PF00107_consen 3 GLMAIQLAKAMGAKVIATDR---SEEKLELAKELGADHVIDY 41 (130)
T ss_dssp HHHHHHHHHHTTSEEEEEES---SHHHHHHHHHTTESEEEET
T ss_pred HHHHHHHHHHcCCEEEEEEC---CHHHHHHHHhhcccccccc
Confidence 55566667777744444433 4567777777776655544
No 111
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=77.24 E-value=16 Score=32.62 Aligned_cols=59 Identities=24% Similarity=0.227 Sum_probs=43.5
Q ss_pred cCCCCCCCeEEEeeCC---ChHHHHHHHHHHHcCCeEEEEecCCC--CHHHHHHHHHcCCEEEEeC
Q 024040 62 KGLITPGKTVLIELTS---GNTGIGLAFIAASRGYKLIIIMPSTY--SIERRIILRALGAEVYLAD 122 (273)
Q Consensus 62 ~g~~~~g~~~vv~~ss---GN~g~a~A~~a~~~g~~~~i~~p~~~--~~~~~~~~~~~Ga~v~~~~ 122 (273)
.|.+. |.+ |+-... +|.+++++..++++|++++++.|+.. ++..++.++..|+++...+
T Consensus 145 ~g~l~-g~~-va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~ 208 (301)
T TIGR00670 145 FGRLD-GLK-IALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETE 208 (301)
T ss_pred hCCCC-CCE-EEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEEC
Confidence 45432 334 555544 69999999999999999999999864 5455666777899887765
No 112
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=77.07 E-value=13 Score=33.20 Aligned_cols=57 Identities=21% Similarity=0.162 Sum_probs=40.9
Q ss_pred HHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 024040 60 EDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (273)
Q Consensus 60 ~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 120 (273)
.+...+++|.+ |+....|..|.+++..|+.+|.+++++.+ ++.|++.++.+||+.+.
T Consensus 158 ~~~~~~~~g~~-VlV~G~g~iG~~a~~~a~~~G~~vi~~~~---~~~~~~~a~~~Ga~~vi 214 (329)
T TIGR02822 158 LLRASLPPGGR-LGLYGFGGSAHLTAQVALAQGATVHVMTR---GAAARRLALALGAASAG 214 (329)
T ss_pred HHhcCCCCCCE-EEEEcCCHHHHHHHHHHHHCCCeEEEEeC---ChHHHHHHHHhCCceec
Confidence 34456778877 55555688898888899999987544332 45688999999997644
No 113
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=76.79 E-value=21 Score=24.44 Aligned_cols=49 Identities=29% Similarity=0.248 Sum_probs=37.0
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecCCC-----CH----HHHHHHHHcCCEEEE
Q 024040 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTY-----SI----ERRIILRALGAEVYL 120 (273)
Q Consensus 72 vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~-----~~----~~~~~~~~~Ga~v~~ 120 (273)
++...+|..|.-+|.+.+.+|.+++++.+... ++ .-.+.++..|.+++.
T Consensus 2 vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~ 59 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHT 59 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEE
T ss_pred EEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEe
Confidence 67788999999999999999999999987532 12 124456667777664
No 114
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=76.76 E-value=42 Score=29.92 Aligned_cols=57 Identities=26% Similarity=0.360 Sum_probs=42.3
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 024040 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (273)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 120 (273)
+...+.++.+ |+...+|..|.+++..|+.+|...++.+.. ++.+.+.++.+|++.+.
T Consensus 168 ~~~~~~~g~~-vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~~v~ 224 (350)
T cd08256 168 DRANIKFDDV-VVLAGAGPLGLGMIGAARLKNPKKLIVLDL--KDERLALARKFGADVVL 224 (350)
T ss_pred HhcCCCCCCE-EEEECCCHHHHHHHHHHHHcCCcEEEEEcC--CHHHHHHHHHcCCcEEe
Confidence 4455677776 444667899999999999999886666543 45777888889986544
No 115
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=76.59 E-value=13 Score=35.79 Aligned_cols=52 Identities=21% Similarity=0.220 Sum_probs=41.5
Q ss_pred CCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeC
Q 024040 67 PGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLAD 122 (273)
Q Consensus 67 ~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~ 122 (273)
|+.+ |+....|..|++.+..|+.+|-+++++ +..+.++++.+.+||+.+.++
T Consensus 164 pg~k-VlViGaG~iGL~Ai~~Ak~lGA~V~a~---D~~~~rle~aeslGA~~v~i~ 215 (509)
T PRK09424 164 PPAK-VLVIGAGVAGLAAIGAAGSLGAIVRAF---DTRPEVAEQVESMGAEFLELD 215 (509)
T ss_pred CCCE-EEEECCcHHHHHHHHHHHHCCCEEEEE---eCCHHHHHHHHHcCCeEEEec
Confidence 4555 889999999999999999999863333 346788999999999966554
No 116
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=76.22 E-value=31 Score=30.60 Aligned_cols=57 Identities=30% Similarity=0.454 Sum_probs=41.4
Q ss_pred HHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 024040 60 EDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (273)
Q Consensus 60 ~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 120 (273)
.+...+.++.+-+|...+|..|.+++..|+.+|.+++++... . +.+.++.+|++.+.
T Consensus 170 ~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~---~-~~~~~~~~g~~~~~ 226 (350)
T cd08274 170 LERAGVGAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGA---A-KEEAVRALGADTVI 226 (350)
T ss_pred HhhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCc---h-hhHHHHhcCCeEEE
Confidence 344557777775565666999999999999999996655432 2 67777889997443
No 117
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=76.10 E-value=44 Score=29.81 Aligned_cols=58 Identities=28% Similarity=0.372 Sum_probs=40.4
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEe
Q 024040 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLA 121 (273)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~ 121 (273)
+...+.++.+-+|. .+|..|.+++..|+.+|.+.++++. .+..+.+.++.+|++.+..
T Consensus 166 ~~~~~~~g~~vlI~-g~g~vG~~a~q~a~~~G~~~v~~~~--~~~~~~~~~~~~ga~~~i~ 223 (351)
T cd08233 166 RRSGFKPGDTALVL-GAGPIGLLTILALKAAGASKIIVSE--PSEARRELAEELGATIVLD 223 (351)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEC--CCHHHHHHHHHhCCCEEEC
Confidence 44456677764444 5688999999999999995444443 3556777778889876543
No 118
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=75.73 E-value=7.1 Score=37.84 Aligned_cols=54 Identities=22% Similarity=0.269 Sum_probs=41.1
Q ss_pred CCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCC------------------CCHHHHHHHHHcCCEEEE
Q 024040 66 TPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPST------------------YSIERRIILRALGAEVYL 120 (273)
Q Consensus 66 ~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~------------------~~~~~~~~~~~~Ga~v~~ 120 (273)
.+|.+ |+...+|-.|++.|.+++++|.+++++=... ....+++.++.+|++++.
T Consensus 135 ~~g~~-V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~ 206 (564)
T PRK12771 135 DTGKR-VAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRL 206 (564)
T ss_pred CCCCE-EEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEe
Confidence 45555 9999999999999999999999977763211 123567778889998765
No 119
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=75.05 E-value=17 Score=29.91 Aligned_cols=61 Identities=25% Similarity=0.299 Sum_probs=38.7
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhC
Q 024040 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRT 141 (273)
Q Consensus 72 vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~ 141 (273)
|--.|||-+|.++|-++...|-+++++..+..-+. -.+.+++.+.. .++-.+...+...+.
T Consensus 23 ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~~~~------p~~~~~i~v~s---a~em~~~~~~~~~~~ 83 (185)
T PF04127_consen 23 ITNRSSGKMGAALAEEAARRGAEVTLIHGPSSLPP------PPGVKVIRVES---AEEMLEAVKELLPSA 83 (185)
T ss_dssp EEES--SHHHHHHHHHHHHTT-EEEEEE-TTS----------TTEEEEE-SS---HHHHHHHHHHHGGGG
T ss_pred ecCCCcCHHHHHHHHHHHHCCCEEEEEecCccccc------cccceEEEecc---hhhhhhhhccccCcc
Confidence 33459999999999999999999999997632111 24777877763 456666666665554
No 120
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=74.94 E-value=34 Score=25.97 Aligned_cols=98 Identities=12% Similarity=0.051 Sum_probs=50.2
Q ss_pred HHHHHHHcCCeEEEEecCCCCHHHHHH-HHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhc
Q 024040 84 LAFIAASRGYKLIIIMPSTYSIERRII-LRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYET 162 (273)
Q Consensus 84 ~A~~a~~~g~~~~i~~p~~~~~~~~~~-~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t 162 (273)
++...+..+.+..|+..........+. ....+.+++.=.+ .++.+++..+.+.+.+.-....+-..|-|.... .+-.
T Consensus 2 l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Q~g-~dLG~Rm~~a~~~~~~g~~~vvliGsD~P~l~~-~~l~ 79 (122)
T PF09837_consen 2 LAALAQADGADVVLAYTPDGDHAAFRQLWLPSGFSFFPQQG-GDLGERMANAFQQAARGYEPVVLIGSDCPDLTP-DDLE 79 (122)
T ss_dssp ------TSSSEEEEEE----TTHHHHHHHH-TTSEEEE--S-SSHHHHHHHHHHHHHTT-SEEEEE-SS-TT--H-HHHH
T ss_pred ccccccCCCcCEEEEEcCCccHHHHhccccCCCCEEeecCC-CCHHHHHHHHHHHHHcCCCcEEEEcCCCCCCCH-HHHH
Confidence 345566778888888865444443333 4455666655433 568899988877773333455555667776552 3333
Q ss_pred hHHHHHHhhCCCcCEEEEecCCCcc
Q 024040 163 TGPEIWNDSGGKVDAFIAGIGTGGT 187 (273)
Q Consensus 163 ~~~Ei~~q~~~~~d~iv~p~G~Gg~ 187 (273)
-+++.++ ..|.|+.|+-=||.
T Consensus 80 ~A~~~L~----~~d~VlgPa~DGGy 100 (122)
T PF09837_consen 80 QAFEALQ----RHDVVLGPAEDGGY 100 (122)
T ss_dssp HHHHHTT----T-SEEEEEBTTSSE
T ss_pred HHHHHhc----cCCEEEeeccCCCE
Confidence 3444333 34999999987774
No 121
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=74.27 E-value=54 Score=29.43 Aligned_cols=57 Identities=19% Similarity=0.202 Sum_probs=41.4
Q ss_pred cCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHH-HcCCEEEEe
Q 024040 62 KGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILR-ALGAEVYLA 121 (273)
Q Consensus 62 ~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~-~~Ga~v~~~ 121 (273)
.+.+.+|++-+|...+|.-|..+...|+.+|.++++.. .+..|.+.++ .+|++-+.-
T Consensus 153 ~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~---~~~~k~~~~~~~lGa~~vi~ 210 (348)
T PLN03154 153 VCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSA---GSSQKVDLLKNKLGFDEAFN 210 (348)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEc---CCHHHHHHHHHhcCCCEEEE
Confidence 45577887755666668899999999999999855443 2457788776 799975543
No 122
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=74.19 E-value=49 Score=29.30 Aligned_cols=58 Identities=29% Similarity=0.401 Sum_probs=39.1
Q ss_pred cCCCCCC--CeEEEeeCCChHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHH-cCCEEEEeC
Q 024040 62 KGLITPG--KTVLIELTSGNTGIGLAFIAASRGY-KLIIIMPSTYSIERRIILRA-LGAEVYLAD 122 (273)
Q Consensus 62 ~g~~~~g--~~~vv~~ssGN~g~a~A~~a~~~g~-~~~i~~p~~~~~~~~~~~~~-~Ga~v~~~~ 122 (273)
.+.++++ ++-+|...+|..|.++...|+.+|. +++++.+ ++.+.+.++. +|++-+...
T Consensus 147 ~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~---s~~~~~~~~~~lGa~~vi~~ 208 (345)
T cd08293 147 KGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICG---SDEKCQLLKSELGFDAAINY 208 (345)
T ss_pred hccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcC---CHHHHHHHHHhcCCcEEEEC
Confidence 3445555 5645555668899998889999998 5555433 4567777765 999765443
No 123
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=73.60 E-value=33 Score=28.86 Aligned_cols=109 Identities=14% Similarity=0.156 Sum_probs=58.9
Q ss_pred HHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCH---HHHHHHHHcCC-EEEEeCCCCChhH
Q 024040 54 SMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSI---ERRIILRALGA-EVYLADPAVGFEG 129 (273)
Q Consensus 54 ~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~---~~~~~~~~~Ga-~v~~~~~~~~~~~ 129 (273)
+++....+.=.++|+++ |.+-.+| .|-..|..|+..+ .|+.-+..+. .=.+.++.+|- +|...-+++.
T Consensus 59 ~~vA~m~~~L~~~~g~~-VLEIGtG-sGY~aAvla~l~~---~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~--- 130 (209)
T COG2518 59 HMVARMLQLLELKPGDR-VLEIGTG-SGYQAAVLARLVG---RVVSIERIEELAEQARRNLETLGYENVTVRHGDGS--- 130 (209)
T ss_pred HHHHHHHHHhCCCCCCe-EEEECCC-chHHHHHHHHHhC---eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcc---
Confidence 33444444334567766 8888888 7788888888888 4443332222 12333666776 4544433211
Q ss_pred HHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhchHHHHHHhhCCCcCEEEEecCC
Q 024040 130 FVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGT 184 (273)
Q Consensus 130 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~iv~p~G~ 184 (273)
. +|--..|||--... ++..++=.-+++|+. .--.+|+|+|+
T Consensus 131 -----------~-G~~~~aPyD~I~Vt-aaa~~vP~~Ll~QL~-~gGrlv~PvG~ 171 (209)
T COG2518 131 -----------K-GWPEEAPYDRIIVT-AAAPEVPEALLDQLK-PGGRLVIPVGS 171 (209)
T ss_pred -----------c-CCCCCCCcCEEEEe-eccCCCCHHHHHhcc-cCCEEEEEEcc
Confidence 0 22222344332222 344445556788984 23468889984
No 124
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=73.38 E-value=19 Score=32.37 Aligned_cols=63 Identities=19% Similarity=0.266 Sum_probs=51.6
Q ss_pred HHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeC
Q 024040 57 KDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLAD 122 (273)
Q Consensus 57 ~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~ 122 (273)
-+|-+.+.+++|.+ ++....|--|+..-.+|+.+|-+=++++. ..+.+++..+.+||+++.-.
T Consensus 159 ~HAcr~~~vk~Gs~-vLV~GAGPIGl~t~l~Aka~GA~~VVi~d--~~~~Rle~Ak~~Ga~~~~~~ 221 (354)
T KOG0024|consen 159 VHACRRAGVKKGSK-VLVLGAGPIGLLTGLVAKAMGASDVVITD--LVANRLELAKKFGATVTDPS 221 (354)
T ss_pred hhhhhhcCcccCCe-EEEECCcHHHHHHHHHHHHcCCCcEEEee--cCHHHHHHHHHhCCeEEeec
Confidence 34566777888877 88899999999999999999988777764 46788999999999987654
No 125
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=72.44 E-value=50 Score=30.14 Aligned_cols=81 Identities=15% Similarity=0.114 Sum_probs=43.9
Q ss_pred CCCCCchhhHHHHHHHHHHHHcCC---CCCCCeEEEeeCCChHHHHHHHHHHH-cCCeEEEEecCCCCHHHHHHHHHcCC
Q 024040 41 MQPCSSVKDRIAYSMIKDAEDKGL---ITPGKTVLIELTSGNTGIGLAFIAAS-RGYKLIIIMPSTYSIERRIILRALGA 116 (273)
Q Consensus 41 ~~ptGS~K~R~a~~~~~~a~~~g~---~~~g~~~vv~~ssGN~g~a~A~~a~~-~g~~~~i~~p~~~~~~~~~~~~~~Ga 116 (273)
-.+.|.-..|-+..-..... .|. +.+.. .|+..+++..++.++..+-. -|=...|++|.-.-..-....+..|+
T Consensus 61 ~~~~G~~~lr~aia~~~~~~-~~~~~~~~~~~-~i~it~Ga~~al~~~~~~l~~~gd~~~vlv~~P~y~~~~~~~~~~g~ 138 (393)
T TIGR03538 61 PTTKGLPELRQAIARWLERR-FDLPTGVDPER-HVLPVNGTREALFAFAQAVINPGQAPLVVMPNPFYQIYEGAALLAGA 138 (393)
T ss_pred CCCCCCHHHHHHHHHHHHHh-hCCcccCCCCc-eEEECCCcHHHHHHHHHHHcCCCCcceEEecCCCCcchHHHHHhcCC
Confidence 34567767775544332221 121 23322 37777777787776654422 24333566665332333445678999
Q ss_pred EEEEeCC
Q 024040 117 EVYLADP 123 (273)
Q Consensus 117 ~v~~~~~ 123 (273)
+++.++-
T Consensus 139 ~~~~v~~ 145 (393)
T TIGR03538 139 EPYFLNC 145 (393)
T ss_pred eEEEeec
Confidence 9998864
No 126
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=71.92 E-value=28 Score=31.08 Aligned_cols=58 Identities=22% Similarity=0.223 Sum_probs=41.7
Q ss_pred HHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 024040 60 EDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (273)
Q Consensus 60 ~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 120 (273)
.+...+.++.+-+|. .+|..|.+++..|+.+|.+.++.+. .+..+++.++.+|++-++
T Consensus 153 ~~~~~~~~g~~vlV~-G~g~vG~~~~~~a~~~G~~~v~~~~--~~~~~~~~~~~~Ga~~~i 210 (347)
T PRK10309 153 FHLAQGCEGKNVIII-GAGTIGLLAIQCAVALGAKSVTAID--INSEKLALAKSLGAMQTF 210 (347)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEC--CCHHHHHHHHHcCCceEe
Confidence 344456677774444 6799999999999999998555543 255778888899996543
No 127
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=71.79 E-value=33 Score=30.38 Aligned_cols=58 Identities=28% Similarity=0.341 Sum_probs=40.6
Q ss_pred HHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 024040 60 EDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (273)
Q Consensus 60 ~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 120 (273)
.+...+.+|.+.+|. .+|-.|.+++..|+.+|.+-++++. .++.|++.++.+|++.+.
T Consensus 156 l~~~~~~~g~~vlV~-G~G~vG~~~~~~ak~~G~~~vi~~~--~~~~~~~~~~~~ga~~~i 213 (339)
T cd08239 156 LRRVGVSGRDTVLVV-GAGPVGLGALMLARALGAEDVIGVD--PSPERLELAKALGADFVI 213 (339)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEC--CCHHHHHHHHHhCCCEEE
Confidence 344446777774554 5688999999999999998333332 345778888899996544
No 128
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=71.59 E-value=19 Score=33.54 Aligned_cols=53 Identities=21% Similarity=0.251 Sum_probs=41.0
Q ss_pred CCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 024040 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (273)
Q Consensus 63 g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 119 (273)
+...+|.+ |+....|.-|+.+|..++.+|.+++++ +.++.+....+.+|+++.
T Consensus 197 ~~~l~Gkt-VvViG~G~IG~~va~~ak~~Ga~ViV~---d~d~~R~~~A~~~G~~~~ 249 (413)
T cd00401 197 DVMIAGKV-AVVAGYGDVGKGCAQSLRGQGARVIVT---EVDPICALQAAMEGYEVM 249 (413)
T ss_pred CCCCCCCE-EEEECCCHHHHHHHHHHHHCCCEEEEE---ECChhhHHHHHhcCCEEc
Confidence 44556666 999999999999999999999975553 234567777788999654
No 129
>PLN02740 Alcohol dehydrogenase-like
Probab=71.33 E-value=29 Score=31.64 Aligned_cols=57 Identities=19% Similarity=0.251 Sum_probs=40.8
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 024040 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (273)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 120 (273)
+...+++|++ |+....|.-|.+++..|+.+|.+-++.+. .++.|++.++.+|++.+.
T Consensus 192 ~~~~~~~g~~-VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~--~~~~r~~~a~~~Ga~~~i 248 (381)
T PLN02740 192 NTANVQAGSS-VAIFGLGAVGLAVAEGARARGASKIIGVD--INPEKFEKGKEMGITDFI 248 (381)
T ss_pred hccCCCCCCE-EEEECCCHHHHHHHHHHHHCCCCcEEEEc--CChHHHHHHHHcCCcEEE
Confidence 3455777877 55556799999999999999985344332 245788888999997543
No 130
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=71.24 E-value=78 Score=28.43 Aligned_cols=146 Identities=18% Similarity=0.211 Sum_probs=72.9
Q ss_pred HHHHHHHHHcCCCCCCCeEEEeeC-CChHHHHHHHHHHHcCCeEEEEecCC--------C---CH---HHH--HHH-HHc
Q 024040 53 YSMIKDAEDKGLITPGKTVLIELT-SGNTGIGLAFIAASRGYKLIIIMPST--------Y---SI---ERR--IIL-RAL 114 (273)
Q Consensus 53 ~~~~~~a~~~g~~~~g~~~vv~~s-sGN~g~a~A~~a~~~g~~~~i~~p~~--------~---~~---~~~--~~~-~~~ 114 (273)
...+..+++++. +. |+... ..+.-......++..|+|++.+-... + .. ... +.+ +.+
T Consensus 70 ~~~i~~li~~~v----dg-Iiv~~~d~~al~~~l~~a~~~gIpVV~~d~~~~~~~~~~~V~~~~~~~~G~~~~~~l~~~l 144 (336)
T PRK15408 70 VQLINNFVNQGY----NA-IIVSAVSPDGLCPALKRAMQRGVKVLTWDSDTKPECRSYYINQGTPEQLGSMLVEMAAKQV 144 (336)
T ss_pred HHHHHHHHHcCC----CE-EEEecCCHHHHHHHHHHHHHCCCeEEEeCCCCCCccceEEEecCCHHHHHHHHHHHHHHhc
Confidence 356667777775 34 44432 33332344455777899988874321 0 01 111 111 223
Q ss_pred C---CEEEEeCCCCCh---hHHHHHHHH-HHHhCCCeEeeCC-CCCCcchHhhhhchHHHHHHhhCCCcCEEEEecCCCc
Q 024040 115 G---AEVYLADPAVGF---EGFVKKGEE-ILNRTPNGYILGQ-FENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGG 186 (273)
Q Consensus 115 G---a~v~~~~~~~~~---~~~~~~a~~-~~~~~~~~~~~~~-~~~~~~~~~g~~t~~~Ei~~q~~~~~d~iv~p~G~Gg 186 (273)
| .+|..+.+..+. .+..+-.++ +.++.++...+.. +.+. ....++ ..+.++++.- +++|.||++ +..
T Consensus 145 ~~g~gki~il~g~~~~~~~~~r~~g~~~~l~~~~p~~~vv~~~~~~~-d~~~a~-~~~~~lL~~~-pdi~aI~~~--~~~ 219 (336)
T PRK15408 145 GKDKAKVAFFYSSPTVTDQNQWVKEAKAKIAKEHPGWEIVTTQFGYN-DATKSL-QTAEGILKAY-PDLDAIIAP--DAN 219 (336)
T ss_pred CCCCCEEEEEECCCCCccHHHHHHHHHHHHHhhCCCCEEEeecCCCC-cHHHHH-HHHHHHHHHC-CCCcEEEEC--CCc
Confidence 3 577555432211 111122222 2234444444432 2222 222233 3455666554 578999987 444
Q ss_pred cHHHHHHHHHhhCC-CcEEEEEe
Q 024040 187 TVTGAGRFLKEKNP-NIKVYGIE 208 (273)
Q Consensus 187 ~~~Gi~~~~k~~~~-~~~vigVe 208 (273)
.+.|+..++++.+. +++|+|..
T Consensus 220 ~~~Ga~~Al~~~g~~~v~VvG~D 242 (336)
T PRK15408 220 ALPAAAQAAENLKRDKVAIVGFS 242 (336)
T ss_pred cHHHHHHHHHhCCCCCEEEEEeC
Confidence 45588899987653 67888876
No 131
>PRK14030 glutamate dehydrogenase; Provisional
Probab=70.69 E-value=32 Score=32.44 Aligned_cols=53 Identities=19% Similarity=0.072 Sum_probs=39.3
Q ss_pred hhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEec
Q 024040 48 KDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMP 100 (273)
Q Consensus 48 K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p 100 (273)
=-||..+.+..+.+.........+|+.-..||-|..+|.....+|.+++.+..
T Consensus 207 Tg~Gv~~~~~~~~~~~g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD 259 (445)
T PRK14030 207 TGFGALYFVHQMLETKGIDIKGKTVAISGFGNVAWGAATKATELGAKVVTISG 259 (445)
T ss_pred cHHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEc
Confidence 35678888877665432333345588889999999999999999999888654
No 132
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=70.52 E-value=46 Score=29.80 Aligned_cols=58 Identities=26% Similarity=0.355 Sum_probs=45.8
Q ss_pred HHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH-cCCEEEE
Q 024040 60 EDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRA-LGAEVYL 120 (273)
Q Consensus 60 ~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~-~Ga~v~~ 120 (273)
++-|..++|.+-+|++.+|-.|.-+--.|+..|.+++-+.. ..+|.+.+.. +|-+...
T Consensus 143 l~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaG---g~eK~~~l~~~lGfD~~i 201 (340)
T COG2130 143 LDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAG---GAEKCDFLTEELGFDAGI 201 (340)
T ss_pred HHhcCCCCCCEEEEEecccccchHHHHHHHhhCCeEEEecC---CHHHHHHHHHhcCCceee
Confidence 34666778888888889999998888889999999888765 4688888887 6666544
No 133
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=70.51 E-value=36 Score=30.68 Aligned_cols=57 Identities=19% Similarity=0.219 Sum_probs=40.2
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 024040 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (273)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 120 (273)
+...+.+|.+ |+...+|..|.+++..|+.+|...++++.. ...+++.++.+|++.+.
T Consensus 181 ~~~~~~~g~~-VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~--~~~~~~~~~~~Ga~~~i 237 (369)
T cd08301 181 NVAKVKKGST-VAIFGLGAVGLAVAEGARIRGASRIIGVDL--NPSKFEQAKKFGVTEFV 237 (369)
T ss_pred hhcCCCCCCE-EEEECCCHHHHHHHHHHHHcCCCeEEEEcC--CHHHHHHHHHcCCceEE
Confidence 3345677777 444567999999999999999843344422 35788888999996544
No 134
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=70.11 E-value=55 Score=28.89 Aligned_cols=54 Identities=26% Similarity=0.333 Sum_probs=38.8
Q ss_pred CCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 024040 64 LITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (273)
Q Consensus 64 ~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 120 (273)
.+.++...+|...++..|.+++..|+.+|.++++..+ ++.+.+.++.+|++-+.
T Consensus 162 ~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~v~ 215 (341)
T cd08297 162 GLKPGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDV---GDEKLELAKELGADAFV 215 (341)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeC---CHHHHHHHHHcCCcEEE
Confidence 4666777555556677999999999999998666543 34667777888876443
No 135
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=69.90 E-value=31 Score=31.17 Aligned_cols=57 Identities=21% Similarity=0.289 Sum_probs=40.4
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 024040 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (273)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 120 (273)
+...+++|.+.+|. .+|..|.+++..|+.+|.+.++.+. .++.|++.++.+|++.++
T Consensus 180 ~~~~~~~g~~VlV~-G~G~vG~~a~~~ak~~G~~~vi~~~--~~~~~~~~~~~lGa~~~i 236 (368)
T cd08300 180 NTAKVEPGSTVAVF-GLGAVGLAVIQGAKAAGASRIIGID--INPDKFELAKKFGATDCV 236 (368)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEe--CCHHHHHHHHHcCCCEEE
Confidence 34556777774555 5789999999999999995344442 245778888889997544
No 136
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=69.57 E-value=19 Score=26.86 Aligned_cols=83 Identities=20% Similarity=0.273 Sum_probs=47.9
Q ss_pred HHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhchHHHHHHhhCC-CcCEEEEecCCCc
Q 024040 108 RIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGG-KVDAFIAGIGTGG 186 (273)
Q Consensus 108 ~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~-~~d~iv~p~G~Gg 186 (273)
++..+.+|++|+.++.+ ++..+.+ ++.+-..+++.. +.. ...+|.+..++ .+|.+|-++|++.
T Consensus 7 ~q~ak~~G~~vi~~~~~---~~k~~~~----~~~Ga~~~~~~~-~~~--------~~~~i~~~~~~~~~d~vid~~g~~~ 70 (130)
T PF00107_consen 7 IQLAKAMGAKVIATDRS---EEKLELA----KELGADHVIDYS-DDD--------FVEQIRELTGGRGVDVVIDCVGSGD 70 (130)
T ss_dssp HHHHHHTTSEEEEEESS---HHHHHHH----HHTTESEEEETT-TSS--------HHHHHHHHTTTSSEEEEEESSSSHH
T ss_pred HHHHHHcCCEEEEEECC---HHHHHHH----Hhhccccccccc-ccc--------cccccccccccccceEEEEecCcHH
Confidence 56778899999998854 3344444 444212223222 222 33445454443 6999999999876
Q ss_pred cHHHHHHHHHhhCCCcEEEEEec
Q 024040 187 TVTGAGRFLKEKNPNIKVYGIEP 209 (273)
Q Consensus 187 ~~~Gi~~~~k~~~~~~~vigVe~ 209 (273)
++. .+++.+.+.-+++.+--
T Consensus 71 ~~~---~~~~~l~~~G~~v~vg~ 90 (130)
T PF00107_consen 71 TLQ---EAIKLLRPGGRIVVVGV 90 (130)
T ss_dssp HHH---HHHHHEEEEEEEEEESS
T ss_pred HHH---HHHHHhccCCEEEEEEc
Confidence 554 44555555556665543
No 137
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=69.52 E-value=54 Score=28.55 Aligned_cols=56 Identities=29% Similarity=0.340 Sum_probs=38.7
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 024040 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (273)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 119 (273)
+...+.+|.+.+|...+|..|.+++..|+.+|.+.+++... ..+.+.++.+|++-+
T Consensus 133 ~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~---~~~~~~~~~~g~~~~ 188 (324)
T cd08292 133 DFLGVKPGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRR---DAGVAELRALGIGPV 188 (324)
T ss_pred HhhCCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecC---HHHHHHHHhcCCCEE
Confidence 33456677774444556889999999999999987666543 345666666787543
No 138
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=69.31 E-value=40 Score=29.43 Aligned_cols=50 Identities=24% Similarity=0.302 Sum_probs=35.5
Q ss_pred CCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 024040 68 GKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (273)
Q Consensus 68 g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 120 (273)
+.+.+|...+|..|.+++..|+.+|.++++... +..+.+.++.+|++-+.
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~v~ 196 (326)
T cd08289 147 QGPVLVTGATGGVGSLAVSILAKLGYEVVASTG---KADAADYLKKLGAKEVI 196 (326)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCeEEEEec---CHHHHHHHHHcCCCEEE
Confidence 445445555699999999999999998655433 34677777889985443
No 139
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=69.30 E-value=98 Score=28.78 Aligned_cols=57 Identities=21% Similarity=0.260 Sum_probs=36.4
Q ss_pred CCCCCCchhhHHHHHHHHHHHHcCCCCCC-CeEEEeeCCChHHHH--HHHHHHHcCCeEEEEe
Q 024040 40 MMQPCSSVKDRIAYSMIKDAEDKGLITPG-KTVLIELTSGNTGIG--LAFIAASRGYKLIIIM 99 (273)
Q Consensus 40 ~~~ptGS~K~R~a~~~~~~a~~~g~~~~g-~~~vv~~ssGN~g~a--~A~~a~~~g~~~~i~~ 99 (273)
+.+|.|.-+ .....+.+...+|.+..| ...+|+..++..|+| +|.+. ..|.+.+++.
T Consensus 14 ~~hp~gc~~--~v~~qi~~~~~~~~~~~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~ 73 (398)
T PRK13656 14 TAHPVGCEA--NVKEQIEYVKAQGPIANGPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVF 73 (398)
T ss_pred CCCCHHHHH--HHHHHHHHHHhcCCcCCCCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEe
Confidence 456777643 346677777777776444 455666666666666 45556 6788877665
No 140
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=68.84 E-value=37 Score=30.67 Aligned_cols=57 Identities=21% Similarity=0.279 Sum_probs=40.7
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 024040 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (273)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 120 (273)
+.+.+.+|.+.+|. .+|..|.+++..|+.+|...++++.. ...|++.++.+|++-+.
T Consensus 178 ~~~~~~~g~~vlV~-G~g~vG~~~~~~a~~~G~~~Vi~~~~--~~~~~~~~~~~ga~~~i 234 (365)
T cd08277 178 NTAKVEPGSTVAVF-GLGAVGLSAIMGAKIAGASRIIGVDI--NEDKFEKAKEFGATDFI 234 (365)
T ss_pred hhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHcCCCcEe
Confidence 44567788774554 67999999999999999854444432 45788888889986443
No 141
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=68.72 E-value=69 Score=29.69 Aligned_cols=80 Identities=18% Similarity=0.155 Sum_probs=43.6
Q ss_pred EEEeeCCChHHHHHHHHHHH-cCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCC-ChhHHHHHHHHHHHhCCCeEeeC
Q 024040 71 VLIELTSGNTGIGLAFIAAS-RGYKLIIIMPSTYSIERRIILRALGAEVYLADPAV-GFEGFVKKGEEILNRTPNGYILG 148 (273)
Q Consensus 71 ~vv~~ssGN~g~a~A~~a~~-~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~ 148 (273)
.|+..++++.++.++..+-. -| + .|+++.-+-..-...++.+|++++.++-+. +++ .+...+..++....+|+.
T Consensus 143 ~Iiit~G~~~al~~~~~~l~~pg-d-~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~g~~--~~~l~~~~~~~~k~i~~~ 218 (431)
T PRK15481 143 EIDLTSGAIDAIERLLCAHLLPG-D-SVAVEDPCFLSSINMLRYAGFSASPVSVDAEGMQ--PEKLERALAQGARAVILT 218 (431)
T ss_pred eEEEecCcHHHHHHHHHHhCCCC-C-EEEEeCCCcHHHHHHHHHcCCeEEeeccCCCCCC--HHHHHHHHhcCCCEEEEC
Confidence 38888888888876665432 23 3 334443333445677788999999886421 222 122222222333566765
Q ss_pred -CCCCCc
Q 024040 149 -QFENPA 154 (273)
Q Consensus 149 -~~~~~~ 154 (273)
...||.
T Consensus 219 p~p~NPT 225 (431)
T PRK15481 219 PRAHNPT 225 (431)
T ss_pred CCCCCCC
Confidence 334443
No 142
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=68.72 E-value=78 Score=27.95 Aligned_cols=54 Identities=28% Similarity=0.454 Sum_probs=39.3
Q ss_pred cCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 024040 62 KGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEV 118 (273)
Q Consensus 62 ~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v 118 (273)
...+.++.+-+| ..+|..|.+++..|+..|.+.++.+.. .+.+.+.++.+|++-
T Consensus 163 ~~~~~~g~~vlI-~g~g~vg~~~~~lak~~G~~~v~~~~~--~~~~~~~~~~~ga~~ 216 (345)
T cd08287 163 SAGVRPGSTVVV-VGDGAVGLCAVLAAKRLGAERIIAMSR--HEDRQALAREFGATD 216 (345)
T ss_pred hcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCCEEEEECC--CHHHHHHHHHcCCce
Confidence 344566666455 568999999999999999986555543 346777888899853
No 143
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=68.51 E-value=67 Score=28.37 Aligned_cols=53 Identities=25% Similarity=0.329 Sum_probs=38.3
Q ss_pred CCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 024040 64 LITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (273)
Q Consensus 64 ~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 120 (273)
.+.++.+ |+...+|..|.+++..|+.+|.+.+++.+ +..++..++.+|++-+.
T Consensus 160 ~~~~~~~-vlV~g~g~iG~~~~~~a~~~G~~vi~~~~---~~~~~~~~~~~g~~~~i 212 (333)
T cd08296 160 GAKPGDL-VAVQGIGGLGHLAVQYAAKMGFRTVAISR---GSDKADLARKLGAHHYI 212 (333)
T ss_pred CCCCCCE-EEEECCcHHHHHHHHHHHHCCCeEEEEeC---ChHHHHHHHHcCCcEEe
Confidence 4566666 44444899999999999999998555433 34677777889985443
No 144
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=68.41 E-value=44 Score=30.25 Aligned_cols=57 Identities=19% Similarity=0.201 Sum_probs=40.5
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 024040 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (273)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 120 (273)
+...+++|.+.+|. .+|.-|.+++..|+.+|.+.++.+. .++.|++.++.+|++.+.
T Consensus 179 ~~~~~~~g~~VlV~-G~G~iG~~a~q~Ak~~G~~~Vi~~~--~~~~~~~~a~~~Ga~~~i 235 (368)
T TIGR02818 179 NTAKVEEGDTVAVF-GLGGIGLSVIQGARMAKASRIIAID--INPAKFELAKKLGATDCV 235 (368)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEc--CCHHHHHHHHHhCCCeEE
Confidence 34556777774444 5788999999999999984344432 356788888999996544
No 145
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=67.90 E-value=63 Score=26.66 Aligned_cols=155 Identities=14% Similarity=0.126 Sum_probs=69.1
Q ss_pred eEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecC-CCCHHHHHHH
Q 024040 33 RIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPS-TYSIERRIIL 111 (273)
Q Consensus 33 ~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~-~~~~~~~~~~ 111 (273)
++|...|..++|-- -+|.. .+++ + .++||+. ++.-.+|.-++++-++...-..+++.+=.+ ..-..-.+..
T Consensus 7 ~~F~~~~~~p~TK~-EIRal--~ls~-L---~~~~g~~-l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~ 78 (187)
T COG2242 7 ELFERDEGGPMTKE-EIRAL--TLSK-L---RPRPGDR-LWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNA 78 (187)
T ss_pred hhhccCCCCCCcHH-HHHHH--HHHh-h---CCCCCCE-EEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHH
Confidence 45666666655511 13322 2222 2 2445554 888888777777777622233444443222 1112223444
Q ss_pred HHcCCE-EEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhchHHHH-HHhhCCCcCEEEEecCCCccHH
Q 024040 112 RALGAE-VYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEI-WNDSGGKVDAFIAGIGTGGTVT 189 (273)
Q Consensus 112 ~~~Ga~-v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei-~~q~~~~~d~iv~p~G~Gg~~~ 189 (273)
+.||.+ +..+.++. .++. ..+. .++..|+....+-.. -.|. ++-+ ..-..+|+-+-+=-+++
T Consensus 79 ~~fg~~n~~vv~g~A--p~~L---~~~~--~~daiFIGGg~~i~~--------ile~~~~~l-~~ggrlV~naitlE~~~ 142 (187)
T COG2242 79 ARFGVDNLEVVEGDA--PEAL---PDLP--SPDAIFIGGGGNIEE--------ILEAAWERL-KPGGRLVANAITLETLA 142 (187)
T ss_pred HHhCCCcEEEEeccc--hHhh---cCCC--CCCEEEECCCCCHHH--------HHHHHHHHc-CcCCeEEEEeecHHHHH
Confidence 556653 44444321 1111 1111 245666644422111 1111 1122 12245555555555566
Q ss_pred HHHHHHHhhCCCcEEEEEecCCC
Q 024040 190 GAGRFLKEKNPNIKVYGIEPSES 212 (273)
Q Consensus 190 Gi~~~~k~~~~~~~vigVe~~~~ 212 (273)
-+...+++++-. .|+-++-...
T Consensus 143 ~a~~~~~~~g~~-ei~~v~is~~ 164 (187)
T COG2242 143 KALEALEQLGGR-EIVQVQISRG 164 (187)
T ss_pred HHHHHHHHcCCc-eEEEEEeecc
Confidence 666666666554 5555554443
No 146
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=67.71 E-value=41 Score=30.76 Aligned_cols=56 Identities=29% Similarity=0.355 Sum_probs=40.8
Q ss_pred CCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEe
Q 024040 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLA 121 (273)
Q Consensus 63 g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~ 121 (273)
..+.++.+.+|...+|..|.+++..|+.+|.+.+++. .+..+...++.+|++.+.-
T Consensus 185 ~~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~~vi~~~---~~~~~~~~~~~~g~~~~v~ 240 (398)
T TIGR01751 185 ATVKPGDNVLIWGAAGGLGSYATQLARAGGGNPVAVV---SSPEKAEYCRELGAEAVID 240 (398)
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCeEEEEc---CCHHHHHHHHHcCCCEEec
Confidence 3456666645555669999999999999999875543 2456778888899875543
No 147
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=67.38 E-value=68 Score=28.56 Aligned_cols=57 Identities=26% Similarity=0.202 Sum_probs=40.3
Q ss_pred HHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 024040 60 EDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (273)
Q Consensus 60 ~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 119 (273)
.+...++++.+.+|. .+|..|.+++..|+.+|.+.++.+.. +..+.+..+.+|++.+
T Consensus 159 ~~~~~~~~g~~vlI~-g~g~iG~~~~~lak~~G~~~v~~~~~--~~~~~~~~~~~g~~~~ 215 (351)
T cd08285 159 AELANIKLGDTVAVF-GIGPVGLMAVAGARLRGAGRIIAVGS--RPNRVELAKEYGATDI 215 (351)
T ss_pred HHccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHcCCceE
Confidence 344556777774554 57889999999999999975555433 3567788888998544
No 148
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=67.25 E-value=49 Score=27.93 Aligned_cols=72 Identities=22% Similarity=0.275 Sum_probs=43.6
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCC-CChhHHHHHHHHHHHh
Q 024040 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPA-VGFEGFVKKGEEILNR 140 (273)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~ 140 (273)
.+.+|+..+|.-|.++|......|.+++++-.........+.++..|.++..+..+ .+.++..+...+..++
T Consensus 9 k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (260)
T PRK12823 9 KVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSELVHEVAAELRAAGGEALALTADLETYAGAQAAMAAAVEA 81 (260)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchHHHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHHH
Confidence 34588888888999999998889998877654321122334455667777654432 2233344444444333
No 149
>PRK06348 aspartate aminotransferase; Provisional
Probab=67.22 E-value=99 Score=28.07 Aligned_cols=78 Identities=10% Similarity=0.069 Sum_probs=42.6
Q ss_pred CCCCCchhhHHHHHHHHHHHHcCC-CCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 024040 41 MQPCSSVKDRIAYSMIKDAEDKGL-ITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (273)
Q Consensus 41 ~~ptGS~K~R~a~~~~~~a~~~g~-~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 119 (273)
..+.|..-.|.+....... +.|. +.++ .|+..+++.+|..++..+-. +-.-.|+++.-+-..-...++..|++++
T Consensus 63 ~~~~G~~~lr~~ia~~~~~-~~~~~~~~~--~i~it~G~~~al~~~~~~~~-~~gd~vlv~~p~y~~~~~~~~~~g~~~~ 138 (384)
T PRK06348 63 TDSGGDVELIEEIIKYYSK-NYDLSFKRN--EIMATVGACHGMYLALQSIL-DPGDEVIIHEPYFTPYKDQIEMVGGKPI 138 (384)
T ss_pred CCCCCcHHHHHHHHHHHHH-HhCCCCChh--hEEEcCChHHHHHHHHHHhc-CCCCEEEEeCCCCcchHHHHHHcCCEEE
Confidence 3446665555443332221 1221 3332 37777888888776665432 2222455554333445666777899998
Q ss_pred EeC
Q 024040 120 LAD 122 (273)
Q Consensus 120 ~~~ 122 (273)
.++
T Consensus 139 ~~~ 141 (384)
T PRK06348 139 ILE 141 (384)
T ss_pred Eec
Confidence 875
No 150
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=67.10 E-value=54 Score=28.65 Aligned_cols=57 Identities=28% Similarity=0.401 Sum_probs=40.7
Q ss_pred HHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 024040 60 EDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (273)
Q Consensus 60 ~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 120 (273)
.+.+.+.++.+.+|. .+|-.|.+++..|+.+|.+.+++. .+..+.+.++.+|+....
T Consensus 148 ~~~~~~~~g~~vlV~-g~g~vg~~~~q~a~~~G~~vi~~~---~~~~~~~~~~~~g~~~~~ 204 (319)
T cd08242 148 LEQVPITPGDKVAVL-GDGKLGLLIAQVLALTGPDVVLVG---RHSEKLALARRLGVETVL 204 (319)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCeEEEEc---CCHHHHHHHHHcCCcEEe
Confidence 345567777774555 578899999999999999954432 235778888889987543
No 151
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=66.56 E-value=28 Score=31.36 Aligned_cols=60 Identities=28% Similarity=0.414 Sum_probs=43.4
Q ss_pred HHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 024040 60 EDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (273)
Q Consensus 60 ~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 123 (273)
.+.| +.||...-|..-+| .|.---.+|+.+|++++++-.. +..|.+.++.+||+.+....
T Consensus 175 k~~g-~~pG~~vgI~GlGG-LGh~aVq~AKAMG~rV~vis~~--~~kkeea~~~LGAd~fv~~~ 234 (360)
T KOG0023|consen 175 KRSG-LGPGKWVGIVGLGG-LGHMAVQYAKAMGMRVTVISTS--SKKKEEAIKSLGADVFVDST 234 (360)
T ss_pred HHcC-CCCCcEEEEecCcc-cchHHHHHHHHhCcEEEEEeCC--chhHHHHHHhcCcceeEEec
Confidence 3455 55887633444445 7776677899999999988643 44788899999999988753
No 152
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=66.32 E-value=48 Score=29.38 Aligned_cols=52 Identities=29% Similarity=0.341 Sum_probs=37.8
Q ss_pred CCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 024040 66 TPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (273)
Q Consensus 66 ~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 120 (273)
.+|.+.+| ...|..|.++...|+.+|.+.++++ ..++.+.+.++.+|++.+.
T Consensus 162 ~~g~~vlV-~~~g~vg~~~~~la~~~G~~~v~~~--~~~~~~~~~~~~lg~~~~~ 213 (341)
T PRK05396 162 LVGEDVLI-TGAGPIGIMAAAVAKHVGARHVVIT--DVNEYRLELARKMGATRAV 213 (341)
T ss_pred CCCCeEEE-ECCCHHHHHHHHHHHHcCCCEEEEE--cCCHHHHHHHHHhCCcEEe
Confidence 45666455 4568899999999999999644444 3456788888889996544
No 153
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=66.32 E-value=41 Score=35.02 Aligned_cols=31 Identities=19% Similarity=0.388 Sum_probs=28.0
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEec
Q 024040 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMP 100 (273)
Q Consensus 70 ~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p 100 (273)
+.|+...+|-.|++.|+..++.|++++||=.
T Consensus 307 kkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~ 337 (944)
T PRK12779 307 PPIAVVGSGPSGLINAYLLAVEGFPVTVFEA 337 (944)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEee
Confidence 4599999999999999999999999999843
No 154
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=66.30 E-value=29 Score=32.63 Aligned_cols=51 Identities=18% Similarity=0.175 Sum_probs=39.7
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecCC-----CCHHHHHHHHHcCCEEEEe
Q 024040 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPST-----YSIERRIILRALGAEVYLA 121 (273)
Q Consensus 71 ~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~-----~~~~~~~~~~~~Ga~v~~~ 121 (273)
.|+...+||.|+-+|..+.++|.+++++.... .....++.++..|.+++.-
T Consensus 274 ~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~l~~~GV~~~~~ 329 (449)
T TIGR01316 274 SVVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDMTARVEEIAHAEEEGVKFHFL 329 (449)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHhCCCEEEec
Confidence 49999999999999999999999999887642 1233446677788887653
No 155
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=65.73 E-value=21 Score=28.47 Aligned_cols=45 Identities=20% Similarity=0.303 Sum_probs=35.4
Q ss_pred ChHHHHHHHHHHHcCCeEEEEecCC--CCH--HHH----HHHHHcCCEEEEeC
Q 024040 78 GNTGIGLAFIAASRGYKLIIIMPST--YSI--ERR----IILRALGAEVYLAD 122 (273)
Q Consensus 78 GN~g~a~A~~a~~~g~~~~i~~p~~--~~~--~~~----~~~~~~Ga~v~~~~ 122 (273)
+|.+.|++..++++|..++++.|+. .+. ..+ +..+..|.++..++
T Consensus 13 ~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ 65 (158)
T PF00185_consen 13 NRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITD 65 (158)
T ss_dssp SHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEES
T ss_pred ChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEe
Confidence 8999999999999999999999987 454 223 23344589888884
No 156
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=65.66 E-value=48 Score=31.37 Aligned_cols=52 Identities=12% Similarity=-0.064 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEec
Q 024040 49 DRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMP 100 (273)
Q Consensus 49 ~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p 100 (273)
-+|..+.+..+.+........++|+....||-|..+|.....+|.+++.+..
T Consensus 217 G~Gv~~~~~~~l~~~~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD 268 (454)
T PTZ00079 217 GYGLVYFVLEVLKKLNDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSD 268 (454)
T ss_pred HHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEc
Confidence 4577888877665332222234588899999999999999999988876654
No 157
>PRK07550 hypothetical protein; Provisional
Probab=65.65 E-value=1.1e+02 Score=27.84 Aligned_cols=76 Identities=18% Similarity=0.165 Sum_probs=43.8
Q ss_pred CCchhhHHHHHHHHHHHHcCC-CCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeC
Q 024040 44 CSSVKDRIAYSMIKDAEDKGL-ITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLAD 122 (273)
Q Consensus 44 tGS~K~R~a~~~~~~a~~~g~-~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~ 122 (273)
.|....|.+..-..... .|. +.+. .|+..++++.+..++..+- .+-.-.|++|.-.-..-...++..|++++.++
T Consensus 67 ~G~~~lr~~ia~~~~~~-~g~~~~~~--~i~~t~G~~~al~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~ 142 (386)
T PRK07550 67 EGLPELREAYAAHYSRL-YGAAISPE--QVHITSGCNQAFWAAMVTL-AGAGDEVILPLPWYFNHKMWLDMLGIRPVYLP 142 (386)
T ss_pred CCCHHHHHHHHHHHHHH-hCCCCCcc--eEEEecCcHHHHHHHHHHh-cCCCCEEEEcCCCCcchHHHHHhcCCEEEEEe
Confidence 57766775444322211 232 3332 3777777778876665543 33344566665333344556788999999887
Q ss_pred C
Q 024040 123 P 123 (273)
Q Consensus 123 ~ 123 (273)
.
T Consensus 143 ~ 143 (386)
T PRK07550 143 C 143 (386)
T ss_pred c
Confidence 5
No 158
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=65.13 E-value=62 Score=25.00 Aligned_cols=54 Identities=30% Similarity=0.321 Sum_probs=38.0
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCH----HHHHHHHHcCCEEEEeCCC
Q 024040 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSI----ERRIILRALGAEVYLADPA 124 (273)
Q Consensus 71 ~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~----~~~~~~~~~Ga~v~~~~~~ 124 (273)
.+|+..++.-|+++|..-.+.|-..++++..+.+. .....++..|.++..+..+
T Consensus 3 ~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D 60 (167)
T PF00106_consen 3 VLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECD 60 (167)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESE
T ss_pred EEEECCCCHHHHHHHHHHHhcCceEEEEeeeccccccccccccccccccccccccccc
Confidence 47788889999999999888877666666554222 2345567788988877643
No 159
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=64.95 E-value=32 Score=33.07 Aligned_cols=49 Identities=20% Similarity=0.188 Sum_probs=39.8
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeC
Q 024040 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLAD 122 (273)
Q Consensus 71 ~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~ 122 (273)
.++....|..|++.+..++.+|..++++- ....++++.+.+|++.+.++
T Consensus 166 kVlViGaG~iGl~Aa~~ak~lGA~V~v~d---~~~~rle~a~~lGa~~v~v~ 214 (511)
T TIGR00561 166 KVLVIGAGVAGLAAIGAANSLGAIVRAFD---TRPEVKEQVQSMGAEFLELD 214 (511)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEe---CCHHHHHHHHHcCCeEEecc
Confidence 37788899999999999999998855543 24567888899999987776
No 160
>PRK08628 short chain dehydrogenase; Provisional
Probab=64.94 E-value=70 Score=26.91 Aligned_cols=55 Identities=22% Similarity=0.170 Sum_probs=38.2
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 024040 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (273)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 123 (273)
...+|+..+|--|.++|..-.+.|.+++++............++..|.++..+..
T Consensus 8 ~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 62 (258)
T PRK08628 8 KVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDDEFAEELRALQPRAEFVQV 62 (258)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhHHHHHHHHhcCCceEEEEc
Confidence 3557888888899999999888999988776543222334555667777765543
No 161
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=64.89 E-value=85 Score=26.45 Aligned_cols=90 Identities=16% Similarity=0.106 Sum_probs=55.9
Q ss_pred HHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHH
Q 024040 52 AYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFV 131 (273)
Q Consensus 52 a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~ 131 (273)
+.-+.....+.|. ...=|+..|=-...+....++.++ ++.|=.-.-.++...++....||+.+..++- +
T Consensus 27 a~~~a~Ali~gGi----~~IEITl~sp~a~e~I~~l~~~~p-~~lIGAGTVL~~~q~~~a~~aGa~fiVsP~~---~--- 95 (211)
T COG0800 27 ALPLAKALIEGGI----PAIEITLRTPAALEAIRALAKEFP-EALIGAGTVLNPEQARQAIAAGAQFIVSPGL---N--- 95 (211)
T ss_pred HHHHHHHHHHcCC----CeEEEecCCCCHHHHHHHHHHhCc-ccEEccccccCHHHHHHHHHcCCCEEECCCC---C---
Confidence 3444444555554 222355677678888888888888 6655444445778888888999999888853 1
Q ss_pred HHHHHHHHhCCCeEeeCCCCCC
Q 024040 132 KKGEEILNRTPNGYILGQFENP 153 (273)
Q Consensus 132 ~~a~~~~~~~~~~~~~~~~~~~ 153 (273)
....+.+.++ +..|++...+|
T Consensus 96 ~ev~~~a~~~-~ip~~PG~~Tp 116 (211)
T COG0800 96 PEVAKAANRY-GIPYIPGVATP 116 (211)
T ss_pred HHHHHHHHhC-CCcccCCCCCH
Confidence 2233344444 55555444443
No 162
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=64.18 E-value=73 Score=25.46 Aligned_cols=74 Identities=19% Similarity=0.299 Sum_probs=50.3
Q ss_pred CCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecC---------CCCHHHHHHHHH
Q 024040 43 PCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPS---------TYSIERRIILRA 113 (273)
Q Consensus 43 ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~---------~~~~~~~~~~~~ 113 (273)
|.--+-++.....+.+|.+.|- ..-||..|+|-+++-++-+..- .+++++|.-. ..+++-.+.++.
T Consensus 7 pG~eNT~~tle~a~erA~elgi----k~~vVAS~tG~tA~k~lemveg-~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~e 81 (186)
T COG1751 7 PGKENTDETLEIAVERAKELGI----KHIVVASSTGYTALKALEMVEG-DLKVVVVTHHAGFEEKGTQEMDEEVRKELKE 81 (186)
T ss_pred CcccchHHHHHHHHHHHHhcCc----ceEEEEecccHHHHHHHHhccc-CceEEEEEeecccccCCceecCHHHHHHHHH
Confidence 4445668888888899998874 4434555668888765554432 3888777632 235667788888
Q ss_pred cCCEEEEe
Q 024040 114 LGAEVYLA 121 (273)
Q Consensus 114 ~Ga~v~~~ 121 (273)
.|++|..-
T Consensus 82 rGa~v~~~ 89 (186)
T COG1751 82 RGAKVLTQ 89 (186)
T ss_pred cCceeeee
Confidence 99998764
No 163
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=63.57 E-value=73 Score=26.88 Aligned_cols=54 Identities=24% Similarity=0.274 Sum_probs=36.6
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeC
Q 024040 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLAD 122 (273)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~ 122 (273)
.+.+|+..+|.-|.++|..-...|.+++++......+...+.+...|.++..+.
T Consensus 16 k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (258)
T PRK06935 16 KVAIVTGGNTGLGQGYAVALAKAGADIIITTHGTNWDETRRLIEKEGRKVTFVQ 69 (258)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhcCCceEEEE
Confidence 455788888889999999988899998887654211222334455676665554
No 164
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=63.55 E-value=72 Score=26.77 Aligned_cols=55 Identities=15% Similarity=0.057 Sum_probs=38.8
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCC-CHHHHHHHHHcCCEEEEeCC
Q 024040 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTY-SIERRIILRALGAEVYLADP 123 (273)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~-~~~~~~~~~~~Ga~v~~~~~ 123 (273)
.+.+|+..+|.-|.++|....+.|.+++++..... .....+.++..|+++..+..
T Consensus 8 ~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 63 (262)
T PRK13394 8 KTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGGKAIGVAM 63 (262)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEEC
Confidence 45588888899999999999999998776655321 12234455667888766553
No 165
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=63.53 E-value=34 Score=31.19 Aligned_cols=54 Identities=33% Similarity=0.375 Sum_probs=40.1
Q ss_pred CCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 024040 64 LITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (273)
Q Consensus 64 ~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 120 (273)
.+.++.+-+|...+|..|.+++..|+.+|.+.+++. .+..+.+.++.+|++.+.
T Consensus 190 ~~~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~---~s~~~~~~~~~~G~~~~i 243 (393)
T cd08246 190 TVKPGDNVLIWGASGGLGSMAIQLARAAGANPVAVV---SSEEKAEYCRALGAEGVI 243 (393)
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEe---CCHHHHHHHHHcCCCEEE
Confidence 456666644555568999999999999999976554 356788888889986543
No 166
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=63.43 E-value=65 Score=28.08 Aligned_cols=51 Identities=25% Similarity=0.308 Sum_probs=37.5
Q ss_pred CCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 024040 67 PGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (273)
Q Consensus 67 ~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 120 (273)
++.+-+|...+|..|.+++..|+.+|.+++++.. ++.|.+.++.+|++-++
T Consensus 146 ~~~~vlI~ga~g~vg~~~~~~A~~~G~~vi~~~~---~~~~~~~~~~~g~~~~~ 196 (324)
T cd08288 146 GDGPVLVTGAAGGVGSVAVALLARLGYEVVASTG---RPEEADYLRSLGASEII 196 (324)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeC---CHHHHHHHHhcCCCEEE
Confidence 4455455555699999999999999998665543 45778888899985443
No 167
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=63.40 E-value=41 Score=28.42 Aligned_cols=57 Identities=30% Similarity=0.346 Sum_probs=38.5
Q ss_pred HHHHHcCCCCCCCeEEEee-CCC---hHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCC
Q 024040 57 KDAEDKGLITPGKTVLIEL-TSG---NTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGA 116 (273)
Q Consensus 57 ~~a~~~g~~~~g~~~vv~~-ssG---N~g~a~A~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga 116 (273)
..|+..|.. .+.+|++ |.| .+.+|||.+|++-|=+.++++|+..+ ..-.+.|..+|.
T Consensus 33 ISAlAAG~n---AkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~ 94 (218)
T PF07279_consen 33 ISALAAGWN---AKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGL 94 (218)
T ss_pred HHHHhcccc---ceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccc
Confidence 345556652 2335555 554 36899999999999999999998554 344555655664
No 168
>PLN02827 Alcohol dehydrogenase-like
Probab=63.28 E-value=65 Score=29.31 Aligned_cols=57 Identities=19% Similarity=0.289 Sum_probs=40.6
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 024040 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (273)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 120 (273)
+...+.+|.+ |+...+|--|.+++..|+.+|.+.++.+.. ++.|.+.++.+|++-+.
T Consensus 187 ~~~~~~~g~~-VlV~G~G~vG~~~iqlak~~G~~~vi~~~~--~~~~~~~a~~lGa~~~i 243 (378)
T PLN02827 187 NVADVSKGSS-VVIFGLGTVGLSVAQGAKLRGASQIIGVDI--NPEKAEKAKTFGVTDFI 243 (378)
T ss_pred hhcCCCCCCE-EEEECCCHHHHHHHHHHHHcCCCeEEEECC--CHHHHHHHHHcCCcEEE
Confidence 3455677777 444456889999899999999865554432 45788888899996543
No 169
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=63.21 E-value=78 Score=26.71 Aligned_cols=53 Identities=21% Similarity=0.243 Sum_probs=37.2
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeC
Q 024040 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLAD 122 (273)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~ 122 (273)
...+|+..++.-|.++|....+.|.+++++-... .+...+.++..|.++..+.
T Consensus 9 k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~-~~~~~~~~~~~~~~~~~~~ 61 (251)
T PRK12481 9 KVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAE-APETQAQVEALGRKFHFIT 61 (251)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCch-HHHHHHHHHHcCCeEEEEE
Confidence 4558888888899999999889999988764432 2233445566787776554
No 170
>PRK07109 short chain dehydrogenase; Provisional
Probab=63.09 E-value=54 Score=29.32 Aligned_cols=55 Identities=24% Similarity=0.215 Sum_probs=37.8
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCC-CHHHHHHHHHcCCEEEEeCC
Q 024040 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTY-SIERRIILRALGAEVYLADP 123 (273)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~-~~~~~~~~~~~Ga~v~~~~~ 123 (273)
...+|+..+|--|.++|......|.+++++..... -....+.++..|+++..+..
T Consensus 9 k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~ 64 (334)
T PRK07109 9 QVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVA 64 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEe
Confidence 34577888888999999998889998877665321 11224456677888876543
No 171
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=63.03 E-value=55 Score=28.69 Aligned_cols=54 Identities=22% Similarity=0.239 Sum_probs=39.0
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 024040 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEV 118 (273)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v 118 (273)
+...++++.+.+| ..+|..|.+++..|+..|++.+++.+. ..+.+.++.+|++-
T Consensus 161 ~~~~~~~~~~vlV-~g~g~vg~~~~~la~~~g~~v~~~~~~---~~~~~~~~~~g~~~ 214 (329)
T cd08298 161 KLAGLKPGQRLGL-YGFGASAHLALQIARYQGAEVFAFTRS---GEHQELARELGADW 214 (329)
T ss_pred HhhCCCCCCEEEE-ECCcHHHHHHHHHHHHCCCeEEEEcCC---hHHHHHHHHhCCcE
Confidence 4555677777455 567889999999999999887665543 35677778888853
No 172
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=63.03 E-value=1e+02 Score=28.46 Aligned_cols=129 Identities=14% Similarity=0.107 Sum_probs=73.3
Q ss_pred CCchhhHHHHHHHHHHH----HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 024040 44 CSSVKDRIAYSMIKDAE----DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (273)
Q Consensus 44 tGS~K~R~a~~~~~~a~----~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 119 (273)
.|.+..-.|.+.+...+ ..|....|. +|-.-.-||-|..+|..++.+|+++..+=|..... +....
T Consensus 88 pg~na~aVAE~~~~~lL~l~r~~g~~L~gk-tvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~~---------~~~~~ 157 (378)
T PRK15438 88 PGCNAIAVVEYVFSSLLMLAERDGFSLHDR-TVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADR---------GDEGD 157 (378)
T ss_pred CCcCchHHHHHHHHHHHHHhccCCCCcCCC-EEEEECcCHHHHHHHHHHHHCCCEEEEECCccccc---------ccccc
Confidence 35566666666665433 334333444 48888889999999999999999998885532100 11100
Q ss_pred EeCCCCChhHHHHHHHHHHHhCCCeEee-CCCCCCcchHhhhhchHHHHHHhhCCCcCEEEEecCCCccHH--HHHHHHH
Q 024040 120 LADPAVGFEGFVKKGEEILNRTPNGYIL-GQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGGTVT--GAGRFLK 196 (273)
Q Consensus 120 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~iv~p~G~Gg~~~--Gi~~~~k 196 (273)
+.+ ..++.++. +...+ -|....... .-+.-+..+.+.++ +++.+++-+|-|+.+- .+..+++
T Consensus 158 -------~~~----L~ell~~s-DiI~lh~PLt~~g~~-~T~~li~~~~l~~m--k~gailIN~aRG~vVDe~AL~~aL~ 222 (378)
T PRK15438 158 -------FRS----LDELVQEA-DILTFHTPLFKDGPY-KTLHLADEKLIRSL--KPGAILINACRGAVVDNTALLTCLN 222 (378)
T ss_pred -------cCC----HHHHHhhC-CEEEEeCCCCCCccc-ccccccCHHHHhcC--CCCcEEEECCCchhcCHHHHHHHHH
Confidence 111 22233333 44433 232221111 12345667888888 4789999999999864 3344444
Q ss_pred h
Q 024040 197 E 197 (273)
Q Consensus 197 ~ 197 (273)
.
T Consensus 223 ~ 223 (378)
T PRK15438 223 E 223 (378)
T ss_pred h
Confidence 3
No 173
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=62.99 E-value=59 Score=29.95 Aligned_cols=87 Identities=18% Similarity=0.146 Sum_probs=57.1
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCC-Chh-HHHHHHHHHHHhCCCeEee
Q 024040 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAV-GFE-GFVKKGEEILNRTPNGYIL 147 (273)
Q Consensus 70 ~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~-~~~-~~~~~a~~~~~~~~~~~~~ 147 (273)
+..+..+||..++.+|+.+--.|=--.|++|.-+-......+...||+.+++|-+. ++. +....-..+..+....+.+
T Consensus 50 k~ava~~sgT~AL~laL~al~ig~GDeVI~ps~TfvATan~i~~~Ga~PVFvDid~~T~nid~~~ie~aIt~~tKAIipV 129 (374)
T COG0399 50 KYAVAVSSGTAALHLALLALAIGPGDEVIVPSFTFVATANAVLLVGAKPVFVDIDPDTLNIDPDLIEAAITPRTKAIIPV 129 (374)
T ss_pred CeEEEecChHHHHHHHHHhcCCCCCCEEEecCCchHHHHHHHHHcCCeEEEEecCCcccCCCHHHHHHHcccCCeEEEEe
Confidence 44788899989888888754466667888999888889999999999999998542 221 1111111122222233455
Q ss_pred CCCCCCcch
Q 024040 148 GQFENPANP 156 (273)
Q Consensus 148 ~~~~~~~~~ 156 (273)
+-+.++...
T Consensus 130 hl~G~~~dm 138 (374)
T COG0399 130 HLAGQPCDM 138 (374)
T ss_pred hhccCCCCH
Confidence 666666655
No 174
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=62.94 E-value=54 Score=28.95 Aligned_cols=53 Identities=28% Similarity=0.305 Sum_probs=37.5
Q ss_pred CCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 024040 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEV 118 (273)
Q Consensus 63 g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v 118 (273)
..+.++.+.+|. .+|..|.+++..|+.+|+..++++ ..++.+...++.+|+.+
T Consensus 163 ~~~~~~~~vlI~-g~g~vg~~~~~~a~~~g~~~v~~~--~~~~~~~~~~~~~g~~~ 215 (344)
T cd08284 163 AQVRPGDTVAVI-GCGPVGLCAVLSAQVLGAARVFAV--DPVPERLERAAALGAEP 215 (344)
T ss_pred cCCccCCEEEEE-CCcHHHHHHHHHHHHcCCceEEEE--cCCHHHHHHHHHhCCeE
Confidence 345566664555 678999999999999998433444 33457777788899864
No 175
>PRK12743 oxidoreductase; Provisional
Probab=62.60 E-value=57 Score=27.56 Aligned_cols=71 Identities=14% Similarity=0.212 Sum_probs=44.3
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCH--HHHHHHHHcCCEEEEeCCCC-ChhHHHHHHHHHHHh
Q 024040 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSI--ERRIILRALGAEVYLADPAV-GFEGFVKKGEEILNR 140 (273)
Q Consensus 70 ~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~--~~~~~~~~~Ga~v~~~~~~~-~~~~~~~~a~~~~~~ 140 (273)
+.+|+..+|.-|.++|......|.+++++....... ...+.++.+|.++..+..+. +.++..+...++.++
T Consensus 4 ~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 77 (256)
T PRK12743 4 VAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQR 77 (256)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 447888888899999999999999887765433221 22455666788776654322 233333444444433
No 176
>PRK08226 short chain dehydrogenase; Provisional
Probab=62.34 E-value=69 Score=27.05 Aligned_cols=54 Identities=26% Similarity=0.146 Sum_probs=35.6
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeC
Q 024040 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLAD 122 (273)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~ 122 (273)
.+.+|+..+|.-|.++|......|.+++++-...........+...|.++..+.
T Consensus 7 ~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~ 60 (263)
T PRK08226 7 KTALITGALQGIGEGIARVFARHGANLILLDISPEIEKLADELCGRGHRCTAVV 60 (263)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhCCceEEEE
Confidence 355888888999999999988899997766543211122334444566765544
No 177
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=61.96 E-value=30 Score=34.23 Aligned_cols=52 Identities=25% Similarity=0.346 Sum_probs=40.2
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCC--------------C----HHHHHHHHHcCCEEEEe
Q 024040 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTY--------------S----IERRIILRALGAEVYLA 121 (273)
Q Consensus 70 ~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~--------------~----~~~~~~~~~~Ga~v~~~ 121 (273)
..|+...+|-.|++.|+..++.|.+++||-.... + ....+.++.+|.+++.-
T Consensus 311 kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~ 380 (639)
T PRK12809 311 EKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLN 380 (639)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcC
Confidence 3488999999999999999999999998854321 1 12466778899988653
No 178
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=61.62 E-value=51 Score=29.36 Aligned_cols=56 Identities=21% Similarity=0.233 Sum_probs=39.4
Q ss_pred CCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCH--HHHHH----HHHcCCEEEEeCC
Q 024040 68 GKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSI--ERRII----LRALGAEVYLADP 123 (273)
Q Consensus 68 g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~--~~~~~----~~~~Ga~v~~~~~ 123 (273)
|.+-+.+.-+.|.+.++-.+|+++|+++++..|+...+ .-+.. .+..|+++..+..
T Consensus 153 g~k~a~vGDgNNv~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~t~d 214 (310)
T COG0078 153 GLKLAYVGDGNNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKESGGKITLTED 214 (310)
T ss_pred CcEEEEEcCcchHHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEEecC
Confidence 34433344557899999999999999999999986533 22222 2345889988863
No 179
>PRK08589 short chain dehydrogenase; Validated
Probab=61.54 E-value=65 Score=27.57 Aligned_cols=54 Identities=17% Similarity=0.099 Sum_probs=35.9
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeC
Q 024040 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLAD 122 (273)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~ 122 (273)
.+.+|+..++--|.++|......|.+++++-.........+.++..|.++..+.
T Consensus 7 k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~ 60 (272)
T PRK08589 7 KVAVITGASTGIGQASAIALAQEGAYVLAVDIAEAVSETVDKIKSNGGKAKAYH 60 (272)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHhcCCeEEEEE
Confidence 455788888888999998888889988877554111122445556676665544
No 180
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=61.45 E-value=87 Score=27.69 Aligned_cols=48 Identities=19% Similarity=0.269 Sum_probs=35.7
Q ss_pred CCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 024040 68 GKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (273)
Q Consensus 68 g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 119 (273)
+.+ +.....|+.|++++..++.+|.+++++-+. ..+....+.+|++.+
T Consensus 152 g~k-vlViG~G~iG~~~a~~L~~~Ga~V~v~~r~---~~~~~~~~~~G~~~~ 199 (296)
T PRK08306 152 GSN-VLVLGFGRTGMTLARTLKALGANVTVGARK---SAHLARITEMGLSPF 199 (296)
T ss_pred CCE-EEEECCcHHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHcCCeee
Confidence 444 777788999999999999999877776443 345666777887754
No 181
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=61.05 E-value=96 Score=25.80 Aligned_cols=54 Identities=22% Similarity=0.207 Sum_probs=37.2
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 024040 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (273)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 123 (273)
.+.+|+..+|.-|.++|......|.+++++.... .....+.++..+.++..+..
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~-~~~~~~~~~~~~~~~~~~~~ 59 (248)
T TIGR01832 6 KVALVTGANTGLGQGIAVGLAEAGADIVGAGRSE-PSETQQQVEALGRRFLSLTA 59 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCch-HHHHHHHHHhcCCceEEEEC
Confidence 4557788888899999999988999877765432 22334555667776655543
No 182
>PRK06139 short chain dehydrogenase; Provisional
Probab=60.98 E-value=55 Score=29.30 Aligned_cols=54 Identities=30% Similarity=0.272 Sum_probs=36.6
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeC
Q 024040 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLAD 122 (273)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~ 122 (273)
...+|+..+|--|.++|......|.+++++...... ....+.++..|+++..+.
T Consensus 8 k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~ 62 (330)
T PRK06139 8 AVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAEVLVVP 62 (330)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEE
Confidence 355777777889999999988999997776543211 122345666788876554
No 183
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=60.94 E-value=1.3e+02 Score=27.87 Aligned_cols=123 Identities=15% Similarity=0.161 Sum_probs=68.9
Q ss_pred CCchhhHHHHHHHHH----HHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 024040 44 CSSVKDRIAYSMIKD----AEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (273)
Q Consensus 44 tGS~K~R~a~~~~~~----a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 119 (273)
.|.+..-.|.+.+.. +...|....|. +|..-..||-|..+|..++.+|+++.++=|..... -+. +.
T Consensus 88 pg~na~aVAE~v~~~lL~l~r~~g~~l~gk-tvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~--------~~~-~~ 157 (381)
T PRK00257 88 PGCNARGVVDYVLGSLLTLAEREGVDLAER-TYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEA--------EGD-GD 157 (381)
T ss_pred CCcChHHHHHHHHHHHHHHhcccCCCcCcC-EEEEECCCHHHHHHHHHHHHCCCEEEEECCccccc--------ccC-cc
Confidence 355555556665543 23344333443 47778889999999999999999998875532100 010 00
Q ss_pred EeCCCCChhHHHHHHHHHHHhCCCeEee-CCCCCCcchHhhhhchHHHHHHhhCCCcCEEEEecCCCccHHHH
Q 024040 120 LADPAVGFEGFVKKGEEILNRTPNGYIL-GQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGGTVTGA 191 (273)
Q Consensus 120 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~iv~p~G~Gg~~~Gi 191 (273)
+. ...++.++- +...+ -|. ++.....-+.-+..|.+.++ +++.+++-++-|+.+---
T Consensus 158 -------~~----~l~ell~~a-DiV~lh~Pl-t~~g~~~T~~li~~~~l~~m--k~gailIN~aRG~vVde~ 215 (381)
T PRK00257 158 -------FV----SLERILEEC-DVISLHTPL-TKEGEHPTRHLLDEAFLASL--RPGAWLINASRGAVVDNQ 215 (381)
T ss_pred -------cc----CHHHHHhhC-CEEEEeCcC-CCCccccccccCCHHHHhcC--CCCeEEEECCCCcccCHH
Confidence 11 122333333 33333 222 22100012345677888888 578999999999987543
No 184
>PRK08703 short chain dehydrogenase; Provisional
Probab=60.82 E-value=96 Score=25.71 Aligned_cols=32 Identities=28% Similarity=0.320 Sum_probs=25.5
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEec
Q 024040 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMP 100 (273)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p 100 (273)
.+.+|+.++|.-|.++|......|.+++++.+
T Consensus 7 k~vlItG~sggiG~~la~~l~~~g~~V~~~~r 38 (239)
T PRK08703 7 KTILVTGASQGLGEQVAKAYAAAGATVILVAR 38 (239)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeC
Confidence 35578888899999999998888988766544
No 185
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=60.76 E-value=1.4e+02 Score=27.64 Aligned_cols=127 Identities=19% Similarity=0.250 Sum_probs=65.4
Q ss_pred EEeeCCC-hHHHHHHHHHHHcCCeEEEEecC-CCC----HHHHHHHHHcCC-EEEEeCCCCChhHHHHHHHHHHHhCCCe
Q 024040 72 LIELTSG-NTGIGLAFIAASRGYKLIIIMPS-TYS----IERRIILRALGA-EVYLADPAVGFEGFVKKGEEILNRTPNG 144 (273)
Q Consensus 72 vv~~ssG-N~g~a~A~~a~~~g~~~~i~~p~-~~~----~~~~~~~~~~Ga-~v~~~~~~~~~~~~~~~a~~~~~~~~~~ 144 (273)
|+.+|+| .+...+.+.-.+.+.+++.|.-+ .-+ ..-.+....+|| +++.++....|- .+.....-+. +.
T Consensus 1 VLAySGGLDTS~~l~~L~e~~~~~Via~~aDlGq~~~d~~~i~~kA~~~Ga~~~~vvD~r~ef~--~~~i~~aI~a--nA 76 (388)
T PF00764_consen 1 VLAYSGGLDTSVILKWLKEEGGYEVIAVTADLGQPDEDLEAIEEKALKLGASKHIVVDARDEFA--EDYIFPAIKA--NA 76 (388)
T ss_dssp EEE--SSHHHHHHHHHHHHTTTEEEEEEEEESSST-S-HHHHHHHHHHHT-SEEEEEE-HHHHH--HHTHHHHHHT--T-
T ss_pred CeeeCCChHHHHHHHHHHhhcCceEEEEEEECCCcHHHHHHHHHHHHhcCCceeeecchHHHHH--HHHHHHHHHH--HH
Confidence 4566777 35556666677677998888743 112 122334566899 999987531111 1111122122 34
Q ss_pred EeeCCCCC---CcchHhhhhchHHHHHHhhCCCcCEEEEe-cCCCccHHHHHHHHHhhCCCcEEEE
Q 024040 145 YILGQFEN---PANPEIHYETTGPEIWNDSGGKVDAFIAG-IGTGGTVTGAGRFLKEKNPNIKVYG 206 (273)
Q Consensus 145 ~~~~~~~~---~~~~~~g~~t~~~Ei~~q~~~~~d~iv~p-~G~Gg~~~Gi~~~~k~~~~~~~vig 206 (273)
.|-+.|-. ..++. -.....|++++. ..++|... .|-|--..=.-.+++.+.|+.+|++
T Consensus 77 ~Yeg~YpL~tsl~Rpl--Ia~~~v~~A~~~--ga~~vaHG~TgkGNDqvRFe~~~~al~P~l~via 138 (388)
T PF00764_consen 77 LYEGRYPLSTSLARPL--IAKKLVEVAREE--GADAVAHGCTGKGNDQVRFELSIRALAPELKVIA 138 (388)
T ss_dssp -BTTTB--CCCCHHHH--HHHHHHHHHHHH--T-SEEE----TTSSHHHHHHHHHHHHSTTSEEE-
T ss_pred HhCCCccccccchHHH--HHHHHHHHHHHc--CCeEEeccCCcCCCchhHHHHHHHHhCcCCcEec
Confidence 55443321 11111 223344566665 46788874 5777777777788889999998884
No 186
>PRK12831 putative oxidoreductase; Provisional
Probab=60.59 E-value=45 Score=31.53 Aligned_cols=51 Identities=18% Similarity=0.159 Sum_probs=38.8
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecCC---C--CHHHHHHHHHcCCEEEEe
Q 024040 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPST---Y--SIERRIILRALGAEVYLA 121 (273)
Q Consensus 71 ~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~---~--~~~~~~~~~~~Ga~v~~~ 121 (273)
.|+...+||.|.-+|..+.++|.+++++.... . ....++.++..|.+++.-
T Consensus 283 ~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~~~e~~~a~~eGV~i~~~ 338 (464)
T PRK12831 283 KVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPARVEEVHHAKEEGVIFDLL 338 (464)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHHcCCEEEec
Confidence 49999999999999999999999988887542 1 223445566778887643
No 187
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=60.58 E-value=1.1e+02 Score=26.52 Aligned_cols=69 Identities=22% Similarity=0.185 Sum_probs=37.0
Q ss_pred hhHHHHHHHHHHHHcCCCCCCCeEEEeeC-CChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcC-CEEEEe
Q 024040 48 KDRIAYSMIKDAEDKGLITPGKTVLIELT-SGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALG-AEVYLA 121 (273)
Q Consensus 48 K~R~a~~~~~~a~~~g~~~~g~~~vv~~s-sGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~G-a~v~~~ 121 (273)
.-+|....+.++.+.|. .+++..- .=.....+.-.|+..|++.+-+++++++..+++.+.... .=|+.+
T Consensus 100 ~~~G~e~F~~~~~~aGv-----dGlIipDLP~ee~~~~~~~~~~~gl~~I~lv~p~t~~~Ri~~i~~~a~gFiY~v 170 (259)
T PF00290_consen 100 FQYGIERFFKEAKEAGV-----DGLIIPDLPPEESEELREAAKKHGLDLIPLVAPTTPEERIKKIAKQASGFIYLV 170 (259)
T ss_dssp HHH-HHHHHHHHHHHTE-----EEEEETTSBGGGHHHHHHHHHHTT-EEEEEEETTS-HHHHHHHHHH-SSEEEEE
T ss_pred hccchHHHHHHHHHcCC-----CEEEEcCCChHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhCCcEEEee
Confidence 44566666666666553 2244331 122344555667777777777777777777777765543 334443
No 188
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=60.50 E-value=70 Score=27.54 Aligned_cols=94 Identities=12% Similarity=0.120 Sum_probs=46.4
Q ss_pred HHHHHHHHHHc--CCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEe---eCCCCCCcc
Q 024040 81 GIGLAFIAASR--GYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYI---LGQFENPAN 155 (273)
Q Consensus 81 g~a~A~~a~~~--g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~ 155 (273)
|..+.++++.+ |.+..-+-..+.-..-++.....|-.|.++++.. ....+.++.+.++. +.-. .++|.+
T Consensus 69 G~gvv~~~~~~~~~~~~~Rv~G~dl~~~ll~~~~~~~~~v~llG~~~--~v~~~a~~~l~~~y-~l~i~g~~~Gyf~--- 142 (243)
T PRK03692 69 GISVVRSIRKKYPQAQVSRVAGADLWEALMARAGKEGTPVFLVGGKP--EVLAQTEAKLRTQW-NVNIVGSQDGYFT--- 142 (243)
T ss_pred CHHHHHHHHHhcCCCCCCeeChHHHHHHHHHHHHhcCCeEEEECCCH--HHHHHHHHHHHHHh-CCEEEEEeCCCCC---
Confidence 45677777666 4331111111111223444456788999998642 23334444454544 3222 233322
Q ss_pred hHhhhhchHHHHHHhhC-CCcCEEEEecCCC
Q 024040 156 PEIHYETTGPEIWNDSG-GKVDAFIAGIGTG 185 (273)
Q Consensus 156 ~~~g~~t~~~Ei~~q~~-~~~d~iv~p~G~G 185 (273)
.. - ..+|.+++. ..+|.++|+.|.-
T Consensus 143 ~~-e----~~~i~~~I~~s~~dil~VglG~P 168 (243)
T PRK03692 143 PE-Q----RQALFERIHASGAKIVTVAMGSP 168 (243)
T ss_pred HH-H----HHHHHHHHHhcCCCEEEEECCCc
Confidence 11 1 123444442 3599999999864
No 189
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=60.43 E-value=84 Score=27.30 Aligned_cols=52 Identities=13% Similarity=-0.056 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEec
Q 024040 49 DRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMP 100 (273)
Q Consensus 49 ~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p 100 (273)
-||..+.+..+.+.........+|+.-.-||-|..+|.....+|.+++.+..
T Consensus 18 g~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD 69 (254)
T cd05313 18 GYGLVYFVEEMLKDRNETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSD 69 (254)
T ss_pred HHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 4677777777665433332234599899999999999999999988887665
No 190
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=60.29 E-value=1.2e+02 Score=26.53 Aligned_cols=55 Identities=24% Similarity=0.204 Sum_probs=39.4
Q ss_pred cCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 024040 62 KGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (273)
Q Consensus 62 ~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 119 (273)
.+.+.+|.+-+|...+|..|.+++..|+.+|++.+.+.+ +..+...++.+|++-+
T Consensus 135 ~~~~~~g~~vlI~g~~g~ig~~~~~lak~~G~~v~~~~~---~~~~~~~~~~~g~~~~ 189 (327)
T PRK10754 135 TYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVG---SAQKAQRAKKAGAWQV 189 (327)
T ss_pred hcCCCCCCEEEEEeCCcHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHCCCCEE
Confidence 455677777445446788999999999999998665543 3456677788888543
No 191
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=59.88 E-value=83 Score=27.83 Aligned_cols=52 Identities=23% Similarity=0.296 Sum_probs=37.4
Q ss_pred CCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 024040 65 ITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (273)
Q Consensus 65 ~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 119 (273)
+.++.+.+|. .+|-.|.+++..|+.+|.+.++++ ..++.+.+.++.+|++.+
T Consensus 159 ~~~g~~vlI~-~~g~vg~~a~~la~~~G~~~v~~~--~~~~~~~~~~~~~g~~~~ 210 (340)
T TIGR00692 159 PISGKSVLVT-GAGPIGLMAIAVAKASGAYPVIVS--DPNEYRLELAKKMGATYV 210 (340)
T ss_pred CCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEE--CCCHHHHHHHHHhCCcEE
Confidence 4566665554 467888888889999998845555 346778888888998543
No 192
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=59.85 E-value=75 Score=28.77 Aligned_cols=52 Identities=17% Similarity=0.079 Sum_probs=33.4
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 024040 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (273)
Q Consensus 72 vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 123 (273)
|+..+++..++.++..+....-+-.|+++.-+-..-...++.+|++++.++.
T Consensus 94 I~it~Ga~~al~~~~~~~~~~g~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~ 145 (374)
T PRK02610 94 ISVGNGSDELIRSLLIATCLGGEGSILVAEPTFSMYGILAQTLGIPVVRVGR 145 (374)
T ss_pred EEEcCChHHHHHHHHHHHcCCCCCeEEEcCCChHHHHHHHHHcCCEEEEecC
Confidence 7777777777765555443332224556554444556777889999998874
No 193
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=59.81 E-value=47 Score=27.81 Aligned_cols=48 Identities=23% Similarity=0.222 Sum_probs=31.4
Q ss_pred CCChHHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeCC
Q 024040 76 TSGNTGIGLAFIAASRGYKLIIIMPSTYS--IERRIILRALGAEVYLADP 123 (273)
Q Consensus 76 ssGN~g~a~A~~a~~~g~~~~i~~p~~~~--~~~~~~~~~~Ga~v~~~~~ 123 (273)
+++.-|.++|....+.|.++++.-..... ....+..+.+|.+++.++-
T Consensus 4 ~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~ 53 (241)
T PF13561_consen 4 SSSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKEYGAEVIQCDL 53 (241)
T ss_dssp STSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHTTSEEEESCT
T ss_pred CCCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHcCCceEeecC
Confidence 45668888888888889888877654321 1123344567888766664
No 194
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=59.45 E-value=1.2e+02 Score=26.36 Aligned_cols=56 Identities=27% Similarity=0.335 Sum_probs=41.4
Q ss_pred CCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEe
Q 024040 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLA 121 (273)
Q Consensus 63 g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~ 121 (273)
+.+.++.+.+|...+|..|.+++..|+.+|.+.+++.. +..+.+.++.+|++.+..
T Consensus 136 ~~~~~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~~~~ 191 (334)
T PTZ00354 136 GDVKKGQSVLIHAGASGVGTAAAQLAEKYGAATIITTS---SEEKVDFCKKLAAIILIR 191 (334)
T ss_pred cCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCcEEEe
Confidence 55667777556556799999999999999998765433 456777778899864443
No 195
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=59.43 E-value=1.2e+02 Score=27.33 Aligned_cols=56 Identities=21% Similarity=0.268 Sum_probs=39.7
Q ss_pred cCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 024040 62 KGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (273)
Q Consensus 62 ~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 120 (273)
...+.++.+-+|. .+|..|.+++..|+.+|.+.++.+.. +..|.+.++.+|++.++
T Consensus 181 ~~~~~~g~~vlI~-g~g~vG~~~~~la~~~G~~~v~~~~~--~~~k~~~~~~~g~~~~i 236 (365)
T cd08278 181 VLKPRPGSSIAVF-GAGAVGLAAVMAAKIAGCTTIIAVDI--VDSRLELAKELGATHVI 236 (365)
T ss_pred hcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHcCCcEEe
Confidence 3456677774454 67889999999999999975444433 45778888889986444
No 196
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=59.12 E-value=88 Score=26.94 Aligned_cols=55 Identities=27% Similarity=0.364 Sum_probs=39.1
Q ss_pred CCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 024040 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (273)
Q Consensus 63 g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 120 (273)
+.+.+|.+-+|...+|..|.+++..|+..|.+++.+.+ +..+.+.++.+|++-+.
T Consensus 138 ~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~~~ 192 (320)
T cd08243 138 LGLQPGDTLLIRGGTSSVGLAALKLAKALGATVTATTR---SPERAALLKELGADEVV 192 (320)
T ss_pred cCCCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHhcCCcEEE
Confidence 34566667455555699999999999999999655543 34667777888985544
No 197
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=59.04 E-value=82 Score=30.58 Aligned_cols=49 Identities=24% Similarity=0.233 Sum_probs=32.2
Q ss_pred eEEEeeCCChHH---HHHHHHHHHcCCeEEEEecCCCCHH----HHHHHHHcCCEE
Q 024040 70 TVLIELTSGNTG---IGLAFIAASRGYKLIIIMPSTYSIE----RRIILRALGAEV 118 (273)
Q Consensus 70 ~~vv~~ssGN~g---~a~A~~a~~~g~~~~i~~p~~~~~~----~~~~~~~~Ga~v 118 (273)
+.+|.+..||.| ..+|......|.++.|++|...... ..++++.+|..+
T Consensus 137 ~VlVlcGpGNNGGDGLVaAR~L~~~G~~V~V~~~~~~~~~~~~~~~~~~~~~gi~~ 192 (544)
T PLN02918 137 RVLAICGPGNNGGDGLVAARHLHHFGYKPFVCYPKRTAKPLYTGLVTQLESLSVPF 192 (544)
T ss_pred EEEEEECCCcCHHHHHHHHHHHHHCCCceEEEEcCCCCcHHHHHHHHHHHHcCCCe
Confidence 446777777765 4555556667999999997644332 245566677654
No 198
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=59.00 E-value=44 Score=26.68 Aligned_cols=49 Identities=29% Similarity=0.282 Sum_probs=39.6
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeC
Q 024040 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLAD 122 (273)
Q Consensus 71 ~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~ 122 (273)
.|+...+||-|.+.+..+..+|.+.+++- ....+++..+..++..+.++
T Consensus 22 ~vvv~G~G~vg~gA~~~~~~lGa~v~~~d---~~~~~~~~~~~~~~~~i~~~ 70 (168)
T PF01262_consen 22 KVVVTGAGRVGQGAAEIAKGLGAEVVVPD---ERPERLRQLESLGAYFIEVD 70 (168)
T ss_dssp EEEEESTSHHHHHHHHHHHHTT-EEEEEE---SSHHHHHHHHHTTTEESEET
T ss_pred EEEEECCCHHHHHHHHHHhHCCCEEEecc---CCHHHHHhhhcccCceEEEc
Confidence 38888999999999999999999877652 34677888889999888775
No 199
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=58.88 E-value=43 Score=30.56 Aligned_cols=52 Identities=29% Similarity=0.322 Sum_probs=35.9
Q ss_pred CCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 024040 66 TPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (273)
Q Consensus 66 ~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 120 (273)
++|++ |+...+|..|.+++..|+.+|.+.+++.+. +..+.+.++.+|++.+.
T Consensus 177 ~~g~~-VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~--~~~~~~~a~~lGa~~~i 228 (375)
T PLN02178 177 ESGKR-LGVNGLGGLGHIAVKIGKAFGLRVTVISRS--SEKEREAIDRLGADSFL 228 (375)
T ss_pred CCCCE-EEEEcccHHHHHHHHHHHHcCCeEEEEeCC--hHHhHHHHHhCCCcEEE
Confidence 45666 555566889999999999999985554332 23446677789996543
No 200
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=58.50 E-value=70 Score=28.88 Aligned_cols=55 Identities=31% Similarity=0.402 Sum_probs=36.1
Q ss_pred CCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 024040 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (273)
Q Consensus 63 g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 120 (273)
+.+.+|++ |+...+|.-|.+++..|+.+|.+.+++... +..+.+..+.+|++-+.
T Consensus 179 ~~~~~g~~-VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~--~~~~~~~~~~~Ga~~vi 233 (360)
T PLN02586 179 GMTEPGKH-LGVAGLGGLGHVAVKIGKAFGLKVTVISSS--SNKEDEAINRLGADSFL 233 (360)
T ss_pred cccCCCCE-EEEECCCHHHHHHHHHHHHCCCEEEEEeCC--cchhhhHHHhCCCcEEE
Confidence 33456666 555667889999999999999875554332 22334555678986444
No 201
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=58.45 E-value=1.1e+02 Score=25.70 Aligned_cols=54 Identities=20% Similarity=0.179 Sum_probs=38.0
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 024040 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (273)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 123 (273)
...+|+..+|.-|.++|......|.+++++-. .......+.++..+.++..+..
T Consensus 11 k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~-~~~~~~~~~~~~~~~~~~~~~~ 64 (253)
T PRK08993 11 KVAVVTGCDTGLGQGMALGLAEAGCDIVGINI-VEPTETIEQVTALGRRFLSLTA 64 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEecC-cchHHHHHHHHhcCCeEEEEEC
Confidence 35588888899999999999999998776532 2234445566666777765543
No 202
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=58.43 E-value=76 Score=27.84 Aligned_cols=51 Identities=24% Similarity=0.328 Sum_probs=35.7
Q ss_pred CeEEEe-eCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeC
Q 024040 69 KTVLIE-LTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLAD 122 (273)
Q Consensus 69 ~~~vv~-~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~ 122 (273)
...++. ..+|..|.++...|+.+|.+.+++.+ +..|.+.++.+|++-+...
T Consensus 144 ~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~---~~~~~~~~~~~g~~~~i~~ 195 (324)
T cd08291 144 AKAVVHTAAASALGRMLVRLCKADGIKVINIVR---RKEQVDLLKKIGAEYVLNS 195 (324)
T ss_pred CcEEEEccCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCcEEEEC
Confidence 343443 56788888888889999997554433 4577888888999765543
No 203
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=57.79 E-value=87 Score=26.53 Aligned_cols=55 Identities=22% Similarity=0.056 Sum_probs=36.3
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCC
Q 024040 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLADP 123 (273)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~~ 123 (273)
.+.+|+..+|.-|.++|......|.+++++-..... ......++..|++++.+..
T Consensus 11 k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (265)
T PRK07097 11 KIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGIEAHGYVC 66 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEc
Confidence 355888888999999999988899987766332111 1123345556777765543
No 204
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=57.23 E-value=68 Score=25.80 Aligned_cols=53 Identities=26% Similarity=0.223 Sum_probs=35.5
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecCC-----CCHHHHHHHHHcCCEEEEeCCC
Q 024040 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPST-----YSIERRIILRALGAEVYLADPA 124 (273)
Q Consensus 72 vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~-----~~~~~~~~~~~~Ga~v~~~~~~ 124 (273)
+|+...|..|..+|..-...+-.-++++... .....++.++..|++|.....+
T Consensus 4 litGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~D 61 (181)
T PF08659_consen 4 LITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCD 61 (181)
T ss_dssp EEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--
T ss_pred EEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccC
Confidence 6777789999999988666665555555433 2235688889999999877643
No 205
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=56.89 E-value=1e+02 Score=26.36 Aligned_cols=55 Identities=22% Similarity=0.166 Sum_probs=36.9
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCC-CHHHHHHHHHcCCEEEEeCC
Q 024040 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTY-SIERRIILRALGAEVYLADP 123 (273)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~-~~~~~~~~~~~Ga~v~~~~~ 123 (273)
...+|+..+|.-|.++|......|.+++++..... .+.....++..|.++..+..
T Consensus 11 k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 66 (278)
T PRK08277 11 KVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVKA 66 (278)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEC
Confidence 34577888888999999998889998777655321 11223445556777765543
No 206
>PRK10083 putative oxidoreductase; Provisional
Probab=56.89 E-value=1.3e+02 Score=26.41 Aligned_cols=58 Identities=16% Similarity=0.186 Sum_probs=40.9
Q ss_pred HHcCCCCCCCeEEEeeCCChHHHHHHHHHHH-cCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 024040 60 EDKGLITPGKTVLIELTSGNTGIGLAFIAAS-RGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (273)
Q Consensus 60 ~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~-~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 120 (273)
.+...+.+|.+ |+...+|--|.+++..|+. +|.+.++.+.. ++.|.+.++.+|++-+.
T Consensus 153 ~~~~~~~~g~~-vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~--~~~~~~~~~~~Ga~~~i 211 (339)
T PRK10083 153 TGRTGPTEQDV-ALIYGAGPVGLTIVQVLKGVYNVKAVIVADR--IDERLALAKESGADWVI 211 (339)
T ss_pred HHhcCCCCCCE-EEEECCCHHHHHHHHHHHHhCCCCEEEEEcC--CHHHHHHHHHhCCcEEe
Confidence 34556777777 4445478788888888886 69886666543 56888888899996544
No 207
>PLN00175 aminotransferase family protein; Provisional
Probab=56.59 E-value=1.7e+02 Score=27.09 Aligned_cols=51 Identities=10% Similarity=0.046 Sum_probs=31.1
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 024040 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (273)
Q Consensus 72 vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 123 (273)
|+..+++..|..++..+- ++-.-.|++++-.-..-...++.+|++++.++-
T Consensus 118 I~vt~G~~~al~~~~~~l-~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~ 168 (413)
T PLN00175 118 VTVTSGCTEAIAATILGL-INPGDEVILFAPFYDSYEATLSMAGAKIKTVTL 168 (413)
T ss_pred EEEeCCHHHHHHHHHHHh-CCCCCEEEEeCCCchhHHHHHHHcCCEEEEEEC
Confidence 666677777776665543 332233444443333445667889999998863
No 208
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=56.58 E-value=1.5e+02 Score=26.72 Aligned_cols=50 Identities=22% Similarity=0.298 Sum_probs=41.3
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH-cCCEEEEeC
Q 024040 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRA-LGAEVYLAD 122 (273)
Q Consensus 71 ~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~-~Ga~v~~~~ 122 (273)
+++....|.-|+..+..++.+|...+|++. .++.|++..+. .|++++.-.
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d--~~~~Rl~~A~~~~g~~~~~~~ 221 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVD--RSPERLELAKEAGGADVVVNP 221 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeC--CCHHHHHHHHHhCCCeEeecC
Confidence 489999999999999999999999998884 46788888877 777766654
No 209
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=56.58 E-value=68 Score=27.59 Aligned_cols=68 Identities=19% Similarity=0.198 Sum_probs=33.3
Q ss_pred HHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhchHHHHHHhhCCCcCEEEEecC
Q 024040 109 IILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIG 183 (273)
Q Consensus 109 ~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~iv~p~G 183 (273)
+.+...||++.+.--. +...++.++++++. +..++.+.|-.. - +.-..+..+|-++. +++|.+|.+++
T Consensus 26 k~l~~~GAeL~fTy~~---e~l~krv~~la~~~-~s~~v~~cDV~~-d-~~i~~~f~~i~~~~-g~lD~lVHsIa 93 (259)
T COG0623 26 KALAEQGAELAFTYQG---ERLEKRVEELAEEL-GSDLVLPCDVTN-D-ESIDALFATIKKKW-GKLDGLVHSIA 93 (259)
T ss_pred HHHHHcCCEEEEEecc---HHHHHHHHHHHhhc-cCCeEEecCCCC-H-HHHHHHHHHHHHhh-CcccEEEEEec
Confidence 4455667777665421 23344555666655 233333332111 1 23344445555555 46677776665
No 210
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=56.52 E-value=64 Score=27.17 Aligned_cols=52 Identities=21% Similarity=0.074 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecC
Q 024040 50 RIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPS 101 (273)
Q Consensus 50 R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~ 101 (273)
||..+.+..+.+.-.......+|+...-||-|..+|......|.+.+.+...
T Consensus 4 ~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~ 55 (217)
T cd05211 4 YGVVVAMKAAMKHLGDSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDP 55 (217)
T ss_pred hHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcC
Confidence 5666666665543212222345888999999999999999999888887754
No 211
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=56.49 E-value=90 Score=28.23 Aligned_cols=55 Identities=25% Similarity=0.366 Sum_probs=39.3
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 024040 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEV 118 (273)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v 118 (273)
+...+.+|.+.+| ...|..|.+++..|+.+|...++++. .+..|.+.++.+|+..
T Consensus 170 ~~~~~~~g~~vlI-~g~g~vg~~~~~~a~~~G~~~vi~~~--~~~~~~~~~~~~g~~~ 224 (375)
T cd08282 170 ELAGVQPGDTVAV-FGAGPVGLMAAYSAILRGASRVYVVD--HVPERLDLAESIGAIP 224 (375)
T ss_pred HhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCCEEEEEC--CCHHHHHHHHHcCCeE
Confidence 3444667777455 56788999999999999985444443 3568888888899854
No 212
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=56.41 E-value=93 Score=26.78 Aligned_cols=51 Identities=31% Similarity=0.473 Sum_probs=37.0
Q ss_pred CCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 024040 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAE 117 (273)
Q Consensus 63 g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~ 117 (273)
+.+.++.+.+|...+|..|.+++..|+..|.+.+.+.+. .+.+.++.+|++
T Consensus 139 ~~~~~g~~vli~g~~g~~g~~~~~la~~~g~~v~~~~~~----~~~~~~~~~g~~ 189 (319)
T cd08267 139 GKVKPGQRVLINGASGGVGTFAVQIAKALGAHVTGVCST----RNAELVRSLGAD 189 (319)
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCH----HHHHHHHHcCCC
Confidence 345666774555556899999999999999986665532 566677788874
No 213
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=56.03 E-value=93 Score=27.22 Aligned_cols=55 Identities=25% Similarity=0.329 Sum_probs=38.8
Q ss_pred CCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEe
Q 024040 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLA 121 (273)
Q Consensus 63 g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~ 121 (273)
..+.++.+.+|. ..|..|.+++..|+.+|++++++.+ +..+.+.++.+|++.+..
T Consensus 158 ~~~~~~~~vlI~-g~g~iG~~~~~~a~~~G~~v~~~~~---~~~~~~~~~~~g~~~~~~ 212 (330)
T cd08245 158 AGPRPGERVAVL-GIGGLGHLAVQYARAMGFETVAITR---SPDKRELARKLGADEVVD 212 (330)
T ss_pred hCCCCCCEEEEE-CCCHHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHhCCcEEec
Confidence 446666664555 5666999999999999998766543 346677778888765543
No 214
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=55.83 E-value=1.4e+02 Score=26.03 Aligned_cols=54 Identities=26% Similarity=0.428 Sum_probs=36.9
Q ss_pred cCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 024040 62 KGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAE 117 (273)
Q Consensus 62 ~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~ 117 (273)
.+.+.++.+-+| ..+|..|.+++..|+.+|.++++ +....+..+.+.++.+|++
T Consensus 159 ~~~~~~g~~vlI-~g~g~~g~~~~~la~~~G~~v~~-~~~~~~~~~~~~~~~~g~~ 212 (306)
T cd08258 159 RSGIRPGDTVVV-FGPGPIGLLAAQVAKLQGATVVV-VGTEKDEVRLDVAKELGAD 212 (306)
T ss_pred hcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCEEEE-ECCCCCHHHHHHHHHhCCc
Confidence 344566666555 44688999999999999988543 3223345677777888874
No 215
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=55.79 E-value=97 Score=25.55 Aligned_cols=33 Identities=27% Similarity=0.281 Sum_probs=27.7
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecC
Q 024040 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPS 101 (273)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~ 101 (273)
.+.+|+.++|.-|.+++......|.+++++...
T Consensus 6 ~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~ 38 (238)
T PRK05786 6 KKVAIIGVSEGLGYAVAYFALKEGAQVCINSRN 38 (238)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 455788888999999999999999998887654
No 216
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=55.67 E-value=1.6e+02 Score=26.75 Aligned_cols=78 Identities=13% Similarity=0.111 Sum_probs=41.6
Q ss_pred CCCchhhHHHHHHHHHHHHcCC--CCCCCeEEEeeCCChHHHHHHHHHHHcCC---eEEEEecCCCCHHHHHHHHHcCCE
Q 024040 43 PCSSVKDRIAYSMIKDAEDKGL--ITPGKTVLIELTSGNTGIGLAFIAASRGY---KLIIIMPSTYSIERRIILRALGAE 117 (273)
Q Consensus 43 ptGS~K~R~a~~~~~~a~~~g~--~~~g~~~vv~~ssGN~g~a~A~~a~~~g~---~~~i~~p~~~~~~~~~~~~~~Ga~ 117 (273)
+.|.-+.|-+....... ..|. +.+.. .|+..+++..++.++..+-. +- .-.|++|.-.-..-....+.+|++
T Consensus 64 ~~G~~~lr~~ia~~~~~-~~g~~~~~~~~-~i~it~G~~~al~~~~~~l~-~~~~~gd~vlv~~P~y~~~~~~~~~~g~~ 140 (396)
T PRK09147 64 TAGLPALREAIAAWLER-RYGLPALDPAT-QVLPVNGSREALFAFAQTVI-DRDGPGPLVVCPNPFYQIYEGAALLAGAE 140 (396)
T ss_pred CCCCHHHHHHHHHHHHH-HhCCCcCCccc-eEEECCChHHHHHHHHHHHc-CCCCCCCEEEEcCCCccchHHHHHhcCCE
Confidence 45666777544332221 2242 33322 37777777777766555332 21 223444432323345567789999
Q ss_pred EEEeCC
Q 024040 118 VYLADP 123 (273)
Q Consensus 118 v~~~~~ 123 (273)
++.++-
T Consensus 141 ~~~vp~ 146 (396)
T PRK09147 141 PYFLNC 146 (396)
T ss_pred EEEecc
Confidence 998864
No 217
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=55.05 E-value=1.3e+02 Score=26.04 Aligned_cols=55 Identities=31% Similarity=0.472 Sum_probs=38.3
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 024040 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEV 118 (273)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v 118 (273)
+...++++...+|...+|..|.+++..|+.+|.+.+.+.+ ...+.+.++.+|++-
T Consensus 136 ~~~~~~~~~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~---~~~~~~~~~~~g~~~ 190 (324)
T cd08244 136 DLATLTPGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAG---GPAKTALVRALGADV 190 (324)
T ss_pred HhcCCCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHcCCCE
Confidence 3455667777555556788999999999999998655432 345566667788753
No 218
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=54.89 E-value=1.6e+02 Score=31.04 Aligned_cols=30 Identities=17% Similarity=0.142 Sum_probs=27.5
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEec
Q 024040 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMP 100 (273)
Q Consensus 71 ~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p 100 (273)
.|+.-.+|-.|++.|...++.|++++||=.
T Consensus 432 kVaIIG~GPAGLsaA~~La~~G~~VtV~E~ 461 (1006)
T PRK12775 432 KVAICGSGPAGLAAAADLVKYGVDVTVYEA 461 (1006)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCcEEEEec
Confidence 499999999999999999999999999854
No 219
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=54.61 E-value=1.5e+02 Score=26.16 Aligned_cols=51 Identities=18% Similarity=0.241 Sum_probs=36.1
Q ss_pred CCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 024040 66 TPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (273)
Q Consensus 66 ~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 119 (273)
.++.. |+...+|..|.+++..|+.+|.+.++++. .+..+...++.+|++.+
T Consensus 174 ~~~~~-vlI~g~g~vg~~~~~~a~~~G~~~v~~~~--~~~~~~~~~~~~g~~~~ 224 (350)
T cd08240 174 VADEP-VVIIGAGGLGLMALALLKALGPANIIVVD--IDEAKLEAAKAAGADVV 224 (350)
T ss_pred CCCCE-EEEECCcHHHHHHHHHHHHcCCCeEEEEe--CCHHHHHHHHHhCCcEE
Confidence 35555 55556788999999999999996555543 34667777788888643
No 220
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=54.53 E-value=1.6e+02 Score=26.26 Aligned_cols=53 Identities=30% Similarity=0.412 Sum_probs=37.2
Q ss_pred CCCCCCCeEEEeeCCChHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHHcCCEEE
Q 024040 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGY-KLIIIMPSTYSIERRIILRALGAEVY 119 (273)
Q Consensus 63 g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~-~~~i~~p~~~~~~~~~~~~~~Ga~v~ 119 (273)
+...++.+-+|. .+|..|.+++..|+.+|. +++++. .+..+...++.+|++-+
T Consensus 173 ~~~~~g~~vlI~-g~g~vG~~~~~lak~~G~~~v~~~~---~~~~~~~~~~~~g~~~v 226 (361)
T cd08231 173 GPVGAGDTVVVQ-GAGPLGLYAVAAAKLAGARRVIVID---GSPERLELAREFGADAT 226 (361)
T ss_pred cCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEc---CCHHHHHHHHHcCCCeE
Confidence 434466664555 579999999999999999 554442 24567777788898543
No 221
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=54.42 E-value=1.1e+02 Score=25.77 Aligned_cols=54 Identities=19% Similarity=0.115 Sum_probs=35.5
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeC
Q 024040 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLAD 122 (273)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~ 122 (273)
.+.+|+..+|.-|.++|......|.+++++-..... ......++..|.++..+.
T Consensus 11 k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~ 65 (255)
T PRK07523 11 RRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALA 65 (255)
T ss_pred CEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEE
Confidence 455788888999999999988889987665433111 122334555677776654
No 222
>PRK08862 short chain dehydrogenase; Provisional
Probab=54.39 E-value=1e+02 Score=25.70 Aligned_cols=54 Identities=20% Similarity=0.154 Sum_probs=35.2
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeC
Q 024040 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLAD 122 (273)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~ 122 (273)
...+|+..++.-|.++|....+.|.+++++-..... ....+.++..|.+++.+.
T Consensus 6 k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~ 60 (227)
T PRK08862 6 SIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDNVYSFQ 60 (227)
T ss_pred eEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEEE
Confidence 345777777778999999999999997776443211 112344566677765543
No 223
>PRK06114 short chain dehydrogenase; Provisional
Probab=54.24 E-value=1.3e+02 Score=25.23 Aligned_cols=54 Identities=15% Similarity=0.117 Sum_probs=36.8
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeC
Q 024040 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS--IERRIILRALGAEVYLAD 122 (273)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~--~~~~~~~~~~Ga~v~~~~ 122 (273)
...+|+..+|--|.++|......|.++++....... ....+.++..|.++..+.
T Consensus 9 k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~ 64 (254)
T PRK06114 9 QVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGRRAIQIA 64 (254)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCceEEEE
Confidence 455888888889999999888899988877653221 223445666677766554
No 224
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=54.14 E-value=1.2e+02 Score=24.88 Aligned_cols=54 Identities=20% Similarity=0.185 Sum_probs=37.1
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeCC
Q 024040 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS--IERRIILRALGAEVYLADP 123 (273)
Q Consensus 70 ~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~--~~~~~~~~~~Ga~v~~~~~ 123 (273)
+.+|+.++|..|.+++....+.|.+++++.....+ ....+.++..+.++..+..
T Consensus 7 ~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (248)
T PRK05557 7 VALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIGALGGKALAVQG 62 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEc
Confidence 45888888999999999988889987666654322 1223345556778777654
No 225
>PLN02702 L-idonate 5-dehydrogenase
Probab=54.10 E-value=1.2e+02 Score=27.05 Aligned_cols=57 Identities=26% Similarity=0.362 Sum_probs=41.3
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 024040 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (273)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 120 (273)
+...+.++.+.+|. ..|..|.++...++.+|.+.++.+.. +..|.+.++.+|++...
T Consensus 175 ~~~~~~~g~~vlI~-g~g~vG~~~~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~~~~ 231 (364)
T PLN02702 175 RRANIGPETNVLVM-GAGPIGLVTMLAARAFGAPRIVIVDV--DDERLSVAKQLGADEIV 231 (364)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEECC--CHHHHHHHHHhCCCEEE
Confidence 34446667664554 67889999999999999986555543 46778888889987654
No 226
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=53.86 E-value=1.5e+02 Score=25.97 Aligned_cols=57 Identities=19% Similarity=0.199 Sum_probs=39.7
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHH-cCCeEEEEecCCCCHHHHHHHHHcCCEEEEe
Q 024040 61 DKGLITPGKTVLIELTSGNTGIGLAFIAAS-RGYKLIIIMPSTYSIERRIILRALGAEVYLA 121 (273)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~-~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~ 121 (273)
+...++++.+.+|.. +|-.|.+++..|+. .|.+.+++.+ ++.+.+.++.+|++.+..
T Consensus 156 ~~~~~~~g~~vlV~g-~g~vG~~~~~la~~~~g~~v~~~~~---~~~~~~~~~~~g~~~v~~ 213 (338)
T PRK09422 156 KVSGIKPGQWIAIYG-AGGLGNLALQYAKNVFNAKVIAVDI---NDDKLALAKEVGADLTIN 213 (338)
T ss_pred HhcCCCCCCEEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC---ChHHHHHHHHcCCcEEec
Confidence 444567777755555 68888888888887 4987655533 446788888899865543
No 227
>PRK06172 short chain dehydrogenase; Provisional
Probab=53.74 E-value=1.1e+02 Score=25.57 Aligned_cols=55 Identities=20% Similarity=0.245 Sum_probs=37.2
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCC
Q 024040 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLADP 123 (273)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~~ 123 (273)
.+.+|+..+|.-|.++|....+.|.+++++...... +.....++..|.++..+..
T Consensus 8 k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 63 (253)
T PRK06172 8 KVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVAC 63 (253)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEc
Confidence 355788888999999999988899987776543211 1224455667777765543
No 228
>PRK12939 short chain dehydrogenase; Provisional
Probab=53.74 E-value=1.2e+02 Score=25.16 Aligned_cols=55 Identities=18% Similarity=0.091 Sum_probs=35.5
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCC-CHHHHHHHHHcCCEEEEeCC
Q 024040 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTY-SIERRIILRALGAEVYLADP 123 (273)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~-~~~~~~~~~~~Ga~v~~~~~ 123 (273)
.+.+|+..+|.-|.++|....+.|.+++++..... .......++..++++..+..
T Consensus 8 ~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 63 (250)
T PRK12939 8 KRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAA 63 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEc
Confidence 45577888899999999998889998766633211 11223344556766665543
No 229
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=53.70 E-value=59 Score=30.32 Aligned_cols=97 Identities=24% Similarity=0.255 Sum_probs=57.1
Q ss_pred CCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCC
Q 024040 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTP 142 (273)
Q Consensus 63 g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~ 142 (273)
+....|.+ |+....|+-|+.+|..++.+|.+++++=. .+.+.......|+++. + .++ ..+..
T Consensus 190 ~~~l~Gk~-VvViG~G~IG~~vA~~ak~~Ga~ViV~d~---dp~r~~~A~~~G~~v~--~----lee-------al~~a- 251 (406)
T TIGR00936 190 NLLIAGKT-VVVAGYGWCGKGIAMRARGMGARVIVTEV---DPIRALEAAMDGFRVM--T----MEE-------AAKIG- 251 (406)
T ss_pred CCCCCcCE-EEEECCCHHHHHHHHHHhhCcCEEEEEeC---ChhhHHHHHhcCCEeC--C----HHH-------HHhcC-
Confidence 33345555 99999999999999999999998665422 2234444455687553 1 122 11222
Q ss_pred CeEeeCCCCCCcchHhhhhchHHHHHHhhCCCcCEEEEecCCCcc
Q 024040 143 NGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGGT 187 (273)
Q Consensus 143 ~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~iv~p~G~Gg~ 187 (273)
+.++. --.+ ...+..+.++.+ ++..+++-+|.+..
T Consensus 252 DVVIt-aTG~-------~~vI~~~~~~~m--K~GailiN~G~~~~ 286 (406)
T TIGR00936 252 DIFIT-ATGN-------KDVIRGEHFENM--KDGAIVANIGHFDV 286 (406)
T ss_pred CEEEE-CCCC-------HHHHHHHHHhcC--CCCcEEEEECCCCc
Confidence 33322 1111 223445566666 45678888887765
No 230
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=53.69 E-value=1.7e+02 Score=26.43 Aligned_cols=83 Identities=17% Similarity=0.270 Sum_probs=48.2
Q ss_pred EEEeeCCChHHHHHHHHHHHc--CCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCh-hHHHHHHHHHHHhCCCeEee
Q 024040 71 VLIELTSGNTGIGLAFIAASR--GYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGF-EGFVKKGEEILNRTPNGYIL 147 (273)
Q Consensus 71 ~vv~~ssGN~g~a~A~~a~~~--g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~ 147 (273)
+++.+++|..|.-.|+ +..+ |=++.++.--.-.+.-.++.+.+||+|..++.+.+- -.-.+....+++..++.+|+
T Consensus 70 tf~isgsGh~g~E~al-~N~lePgd~vLv~~~G~wg~ra~D~~~r~ga~V~~v~~~~G~~~~le~i~~~lsqh~p~~vfv 148 (385)
T KOG2862|consen 70 TFVISGSGHSGWEAAL-VNLLEPGDNVLVVSTGTWGQRAADCARRYGAEVDVVEADIGQAVPLEEITEKLSQHKPKAVFV 148 (385)
T ss_pred eEEEecCCcchHHHHH-HhhcCCCCeEEEEEechHHHHHHHHHHhhCceeeEEecCcccCccHHHHHHHHHhcCCceEEE
Confidence 4777888866655444 3433 333444433333555677788899999888643210 12234455566666678887
Q ss_pred CCCCCCc
Q 024040 148 GQFENPA 154 (273)
Q Consensus 148 ~~~~~~~ 154 (273)
-+.+...
T Consensus 149 ~hgdsST 155 (385)
T KOG2862|consen 149 THGDSST 155 (385)
T ss_pred EecCccc
Confidence 7765543
No 231
>PRK10490 sensor protein KdpD; Provisional
Probab=53.33 E-value=2.8e+02 Score=28.75 Aligned_cols=107 Identities=15% Similarity=0.070 Sum_probs=61.5
Q ss_pred eEEEeeCCChHH----HHHHHHHHHcCCeEEEEecCC-----CCH-------HHHHHHHHcCCEEEEeCCCCChhHHHHH
Q 024040 70 TVLIELTSGNTG----IGLAFIAASRGYKLIIIMPST-----YSI-------ERRIILRALGAEVYLADPAVGFEGFVKK 133 (273)
Q Consensus 70 ~~vv~~ssGN~g----~a~A~~a~~~g~~~~i~~p~~-----~~~-------~~~~~~~~~Ga~v~~~~~~~~~~~~~~~ 133 (273)
+.+|+-|++-++ +..+-.|.+++-+.+++.-++ .+. ..++..+.+||+++.+.++ +..+.
T Consensus 252 riLV~v~~~~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~~~~~~~~~l~~~~~lA~~lGa~~~~~~~~----dva~~ 327 (895)
T PRK10490 252 AILLCIGHNTGSEKLVRTAARLAARLGSVWHAVYVETPRLHRLPEKKRRAILSALRLAQELGAETATLSDP----AEEKA 327 (895)
T ss_pred eEEEEECCCcchHHHHHHHHHHHHhcCCCEEEEEEecCCcCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCC----CHHHH
Confidence 435555665555 333455677787776654221 111 1234556799999888763 23334
Q ss_pred HHHHHHhCC-CeEeeCCCCCCcchHhhhhchHHHHHHhhCCCcCEEEEecC
Q 024040 134 GEEILNRTP-NGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIG 183 (273)
Q Consensus 134 a~~~~~~~~-~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~iv~p~G 183 (273)
-.+++++++ ..+.+....... + ...+++...+++.. +++|..|+|..
T Consensus 328 i~~~A~~~~vt~IViG~s~~~~-~-~~~~s~~~~l~r~~-~~idi~iv~~~ 375 (895)
T PRK10490 328 VLRYAREHNLGKIIIGRRASRR-W-WRRESFADRLARLG-PDLDLVIVALD 375 (895)
T ss_pred HHHHHHHhCCCEEEECCCCCCC-C-ccCCCHHHHHHHhC-CCCCEEEEeCC
Confidence 445666553 334554443322 2 23457888888887 57888888744
No 232
>PRK05826 pyruvate kinase; Provisional
Probab=53.31 E-value=1.9e+02 Score=27.59 Aligned_cols=125 Identities=12% Similarity=0.102 Sum_probs=71.0
Q ss_pred HHHHHHHHcCCeEEEE-----------ecCCCCHHHHHHHHHcCCEEEEeCCC---CCh-hHHHHHHHHHHHhCCCeEee
Q 024040 83 GLAFIAASRGYKLIII-----------MPSTYSIERRIILRALGAEVYLADPA---VGF-EGFVKKGEEILNRTPNGYIL 147 (273)
Q Consensus 83 a~A~~a~~~g~~~~i~-----------~p~~~~~~~~~~~~~~Ga~v~~~~~~---~~~-~~~~~~a~~~~~~~~~~~~~ 147 (273)
-+...|++.|.++.+- .|..+....+...-..|++-+...++ +.| .++.+...+.+++.+..++.
T Consensus 263 ~Ii~~c~~~gKpvi~ATqmLeSM~~~p~PTRAEvsDVanav~dG~D~vmLS~ETA~G~yPveaV~~m~~I~~~aE~~~~~ 342 (465)
T PRK05826 263 KIIRKAREAGKPVITATQMLESMIENPRPTRAEVSDVANAVLDGTDAVMLSGETAAGKYPVEAVEAMARICKGAEKEFSI 342 (465)
T ss_pred HHHHHHHHcCCCEEEECHHHHHHhhCCCCchhhhhhHHHHHHcCCcEEEeccccccCcCHHHHHHHHHHHHHHHHhccch
Confidence 3455688899998874 23333334455555679988776543 122 35555555554433221111
Q ss_pred ----CCCCCC-cchHhhhhchHHHHHHhhCCCcCEEEEecCCCccHHHHHHHHHhhCCCcEEEEEecCCC
Q 024040 148 ----GQFENP-ANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSES 212 (273)
Q Consensus 148 ----~~~~~~-~~~~~g~~t~~~Ei~~q~~~~~d~iv~p~G~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~ 212 (273)
...... ..........+.++.++++ ..+.||+..-+|.++--++ ...|.+.|+++.+...
T Consensus 343 ~~~~~~~~~~~~~~~~~ia~aa~~~a~~l~-~a~~Ivv~T~sG~ta~~is----k~RP~~pI~~~t~~~~ 407 (465)
T PRK05826 343 NLSKHRLDRQFDRIDEAIAMSAMYAANHLK-GVKAIVALTESGRTARLIS----RFRPGAPIFAVTRDEK 407 (465)
T ss_pred hhhhhhccccccchHHHHHHHHHHHHHhcC-CCCEEEEECCCcHHHHHHH----hhCCCCCEEEEcCCHH
Confidence 000010 1111244555667777772 2678999998988765544 4478889999986543
No 233
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=53.08 E-value=1.5e+02 Score=25.60 Aligned_cols=54 Identities=28% Similarity=0.298 Sum_probs=37.3
Q ss_pred cCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 024040 62 KGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEV 118 (273)
Q Consensus 62 ~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v 118 (273)
.+.+.++.+-+|...+|..|.+++..|+.+|.+.++.... ..+.+.++.+|++-
T Consensus 133 ~~~~~~~~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~ 186 (323)
T cd05282 133 YLKLPPGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRR---DEQVEELKALGADE 186 (323)
T ss_pred hccCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecC---hHHHHHHHhcCCCE
Confidence 3445666664455566889999999999999987665443 35566667788743
No 234
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=53.06 E-value=1.2e+02 Score=26.29 Aligned_cols=53 Identities=32% Similarity=0.449 Sum_probs=39.1
Q ss_pred CCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 024040 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEV 118 (273)
Q Consensus 63 g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v 118 (273)
..+.++.+.+|...+|..|.+++..++..|.+++++.. +..+.+.++.+|++-
T Consensus 158 ~~~~~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~~~~~ 210 (332)
T cd08259 158 AGVKKGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTR---SPEKLKILKELGADY 210 (332)
T ss_pred hCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeC---CHHHHHHHHHcCCcE
Confidence 55667777566667789999999999999999776653 235566667778743
No 235
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=52.58 E-value=1.1e+02 Score=27.14 Aligned_cols=51 Identities=29% Similarity=0.398 Sum_probs=36.5
Q ss_pred CCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 024040 66 TPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (273)
Q Consensus 66 ~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 119 (273)
.++.+-+|. .+|..|.+++..|+.+|.+.+++. ..+..|....+.+|++-+
T Consensus 162 ~~g~~vlV~-g~g~vg~~~~~la~~~G~~~v~~~--~~~~~~~~~~~~~g~~~~ 212 (341)
T cd05281 162 VSGKSVLIT-GCGPIGLMAIAVAKAAGASLVIAS--DPNPYRLELAKKMGADVV 212 (341)
T ss_pred CCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEE--CCCHHHHHHHHHhCccee
Confidence 456665554 468899999999999998644555 345677788888998543
No 236
>PRK05993 short chain dehydrogenase; Provisional
Probab=52.54 E-value=1.5e+02 Score=25.37 Aligned_cols=52 Identities=25% Similarity=0.252 Sum_probs=38.3
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 024040 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (273)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 123 (273)
...+|+..+|.-|.++|......|.+++++... ..+++.++..|.+++.++-
T Consensus 5 k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~---~~~~~~l~~~~~~~~~~Dl 56 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQSDGWRVFATCRK---EEDVAALEAEGLEAFQLDY 56 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHCCceEEEccC
Confidence 345788888999999999988899988776543 3455666666777766664
No 237
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=52.43 E-value=1.7e+02 Score=26.33 Aligned_cols=54 Identities=22% Similarity=0.361 Sum_probs=39.3
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 024040 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAE 117 (273)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~ 117 (273)
+...+.+|.+-+| ..+|..|.+++..|+.+|.+.++.+.. +..+.+.++.+|++
T Consensus 177 ~~~~~~~g~~vlI-~g~g~vG~~a~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~ 230 (365)
T cd05279 177 NTAKVTPGSTCAV-FGLGGVGLSVIMGCKAAGASRIIAVDI--NKDKFEKAKQLGAT 230 (365)
T ss_pred hccCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHhCCC
Confidence 3445677777455 467899999999999999875555432 55778888889984
No 238
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=52.38 E-value=1.4e+02 Score=26.44 Aligned_cols=58 Identities=24% Similarity=0.311 Sum_probs=39.6
Q ss_pred HHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 024040 60 EDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (273)
Q Consensus 60 ~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 120 (273)
.+...+.++.+-+|. .+|-.|.+++..|+.+|.+.++++.. +..+...++.+|++-+.
T Consensus 155 ~~~~~~~~g~~vlI~-g~g~vG~~a~~lak~~G~~~v~~~~~--~~~~~~~~~~~g~~~vi 212 (343)
T cd05285 155 CRRAGVRPGDTVLVF-GAGPIGLLTAAVAKAFGATKVVVTDI--DPSRLEFAKELGATHTV 212 (343)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHHHcCCcEEe
Confidence 356667788875664 56778888888999999984333322 34666777778886544
No 239
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=52.34 E-value=1.3e+02 Score=26.34 Aligned_cols=56 Identities=16% Similarity=0.102 Sum_probs=38.0
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCC--CHHHHHHHHHcCCEEEEeCCC
Q 024040 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTY--SIERRIILRALGAEVYLADPA 124 (273)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~--~~~~~~~~~~~Ga~v~~~~~~ 124 (273)
...+|+..+|.-|.++|..-...|.++++.-.... .....+.++..|.+++.+..+
T Consensus 13 k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~D 70 (306)
T PRK07792 13 KVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAGAKAVAVAGD 70 (306)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcCCeEEEEeCC
Confidence 35588888888999999888888998776543221 122345566778888766543
No 240
>PRK12937 short chain dehydrogenase; Provisional
Probab=52.32 E-value=1.3e+02 Score=24.77 Aligned_cols=55 Identities=16% Similarity=0.191 Sum_probs=38.4
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeCC
Q 024040 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS--IERRIILRALGAEVYLADP 123 (273)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~--~~~~~~~~~~Ga~v~~~~~ 123 (273)
.+.+|+..+|.-|.++|..-.+.|.+++++.....+ ....+.++.++.++..+..
T Consensus 6 ~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (245)
T PRK12937 6 KVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAGGRAIAVQA 62 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcCCeEEEEEC
Confidence 345788888999999999988899988776543321 1234455667888877654
No 241
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=52.27 E-value=1.2e+02 Score=26.44 Aligned_cols=53 Identities=26% Similarity=0.386 Sum_probs=37.6
Q ss_pred CCCCC-eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 024040 65 ITPGK-TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (273)
Q Consensus 65 ~~~g~-~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 120 (273)
+.++. +-+|...+|..|.+++..|+.+|.+.++.... ..+.+.++.+|++-+.
T Consensus 142 ~~~~~~~vlI~g~~g~vg~~~~~la~~~G~~vi~~~~~---~~~~~~~~~~g~~~~~ 195 (323)
T TIGR02823 142 LTPEDGPVLVTGATGGVGSLAVAILSKLGYEVVASTGK---AEEEDYLKELGASEVI 195 (323)
T ss_pred CCCCCceEEEEcCCcHHHHHHHHHHHHcCCeEEEEeCC---HHHHHHHHhcCCcEEE
Confidence 56666 64555556999999999999999986655432 3555777888985433
No 242
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=52.18 E-value=1.1e+02 Score=27.73 Aligned_cols=54 Identities=22% Similarity=0.326 Sum_probs=38.5
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 024040 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAE 117 (273)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~ 117 (273)
+...++++.+.+|. .+|.-|.+++..|+.+|.+-++++. ....+++.++.+|++
T Consensus 184 ~~~~~~~g~~VlV~-G~g~vG~~~~~~a~~~G~~~Vi~~~--~~~~~~~~a~~lGa~ 237 (373)
T cd08299 184 NTAKVTPGSTCAVF-GLGGVGLSAIMGCKAAGASRIIAVD--INKDKFAKAKELGAT 237 (373)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEc--CCHHHHHHHHHcCCc
Confidence 44556777764444 6788999999999999994344443 245778888889985
No 243
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=52.16 E-value=48 Score=30.15 Aligned_cols=54 Identities=17% Similarity=0.114 Sum_probs=38.4
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCC
Q 024040 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPA 124 (273)
Q Consensus 71 ~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~ 124 (273)
.++..++|..|..+++.+...+-.-.|++|..+-......++..|++++.++-+
T Consensus 48 ~~v~~~sgt~al~~~l~~~~~~~Gd~Viv~~~t~~~~~~~~~~~G~~~v~~d~d 101 (375)
T PRK11706 48 KVLLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDIR 101 (375)
T ss_pred eEEEECCHHHHHHHHHHHhCCCCCCEEEECCCCcHHHHHHHHHcCCEEEEEecC
Confidence 477788888887666554333333467778766667778888899999998743
No 244
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=51.80 E-value=1.6e+02 Score=25.36 Aligned_cols=54 Identities=33% Similarity=0.451 Sum_probs=37.5
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCe-EEEEecCCCCHHHHHHHHHcCCEE
Q 024040 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYK-LIIIMPSTYSIERRIILRALGAEV 118 (273)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~-~~i~~p~~~~~~~~~~~~~~Ga~v 118 (273)
+...+.++.+.+|. .+|-.|.+++..|+.+|.+ .+++ .. .+.+...++.+|++-
T Consensus 123 ~~~~~~~~~~vlI~-g~g~vg~~~~~la~~~g~~~v~~~-~~--~~~~~~~~~~~g~~~ 177 (312)
T cd08269 123 RRGWIRAGKTVAVI-GAGFIGLLFLQLAAAAGARRVIAI-DR--RPARLALARELGATE 177 (312)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEE-CC--CHHHHHHHHHhCCce
Confidence 34556677775555 4677999999999999998 5443 22 345667778888753
No 245
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=51.70 E-value=1.6e+02 Score=25.51 Aligned_cols=54 Identities=26% Similarity=0.351 Sum_probs=38.1
Q ss_pred CCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 024040 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (273)
Q Consensus 63 g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 120 (273)
..+.+|.. |+...+|..|.+++..|+..|.++++..+ +..+.+.++.+|++-++
T Consensus 156 ~~~~~g~~-vli~g~g~~g~~~~~~a~~~G~~v~~~~~---~~~~~~~~~~~g~~~~~ 209 (336)
T cd08276 156 GPLKPGDT-VLVQGTGGVSLFALQFAKAAGARVIATSS---SDEKLERAKALGADHVI 209 (336)
T ss_pred cCCCCCCE-EEEECCcHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCEEE
Confidence 45667766 54456788999999999999998655543 44667777777876543
No 246
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=51.33 E-value=1.1e+02 Score=26.81 Aligned_cols=49 Identities=35% Similarity=0.473 Sum_probs=33.9
Q ss_pred cCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 024040 62 KGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAE 117 (273)
Q Consensus 62 ~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~ 117 (273)
...++++.+.+|...+|..|.+++..|+.+|.+++++. +.+..+.+|++
T Consensus 157 ~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G~~v~~~~-------~~~~~~~~g~~ 205 (325)
T cd08264 157 TAGLGPGETVVVFGASGNTGIFAVQLAKMMGAEVIAVS-------RKDWLKEFGAD 205 (325)
T ss_pred hcCCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEe-------HHHHHHHhCCC
Confidence 35567777745555569999999999999999865543 12444567764
No 247
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=51.31 E-value=1.4e+02 Score=24.75 Aligned_cols=55 Identities=22% Similarity=0.305 Sum_probs=37.8
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCH--HHHHHHHHcCCEEEEeCC
Q 024040 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSI--ERRIILRALGAEVYLADP 123 (273)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~--~~~~~~~~~Ga~v~~~~~ 123 (273)
.+.+|+..+|.-|.++|..-...|.+++++....... ...+.++..|.++..+..
T Consensus 5 ~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 61 (250)
T PRK08063 5 KVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGRKALAVKA 61 (250)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEc
Confidence 4558888889999999999888999877654332221 223456667888776654
No 248
>PRK12828 short chain dehydrogenase; Provisional
Probab=51.20 E-value=1.4e+02 Score=24.49 Aligned_cols=55 Identities=22% Similarity=0.068 Sum_probs=38.1
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCC
Q 024040 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLADP 123 (273)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~~ 123 (273)
.+.+|+.++|--|.++|....+.|.+++++.....+ ......+...+.+++.++-
T Consensus 8 k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~ 63 (239)
T PRK12828 8 KVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPADALRIGGIDL 63 (239)
T ss_pred CEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhhcCceEEEeec
Confidence 456888888999999999888889997776653211 1233445566777776654
No 249
>PRK06182 short chain dehydrogenase; Validated
Probab=51.17 E-value=1.5e+02 Score=25.12 Aligned_cols=67 Identities=19% Similarity=0.186 Sum_probs=43.6
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHH
Q 024040 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILN 139 (273)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~ 139 (273)
...+|+.++|--|.++|......|.+++++... ..+++.+...+.+++.++-. +.++..+...+..+
T Consensus 4 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~---~~~l~~~~~~~~~~~~~Dv~-~~~~~~~~~~~~~~ 70 (273)
T PRK06182 4 KVALVTGASSGIGKATARRLAAQGYTVYGAARR---VDKMEDLASLGVHPLSLDVT-DEASIKAAVDTIIA 70 (273)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHhCCCeEEEeeCC-CHHHHHHHHHHHHH
Confidence 345788888889999999988899988876543 34555555567777766642 23333333444433
No 250
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=50.96 E-value=1.4e+02 Score=24.64 Aligned_cols=54 Identities=19% Similarity=0.200 Sum_probs=35.9
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCC
Q 024040 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLADP 123 (273)
Q Consensus 70 ~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~~ 123 (273)
+.+|+..+|..|.+++......|.+++++...... ......++..|.+++.+..
T Consensus 9 ~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 63 (239)
T PRK07666 9 NALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIATA 63 (239)
T ss_pred EEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEEC
Confidence 45788888889999999888889987776654211 1123344556777765543
No 251
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=50.92 E-value=73 Score=30.12 Aligned_cols=50 Identities=26% Similarity=0.363 Sum_probs=38.5
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecCCC---------C---------HHHHHHHHHcCCEEEE
Q 024040 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTY---------S---------IERRIILRALGAEVYL 120 (273)
Q Consensus 71 ~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~---------~---------~~~~~~~~~~Ga~v~~ 120 (273)
.|+...+|-.|++.|..+++.|.+++++-.... + ....+.++.+|.+++.
T Consensus 143 ~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~ 210 (467)
T TIGR01318 143 RVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHL 210 (467)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEEC
Confidence 499999999999999999999999888743221 1 1345677889998764
No 252
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=50.77 E-value=1.3e+02 Score=24.86 Aligned_cols=54 Identities=28% Similarity=0.173 Sum_probs=35.6
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCC-CHHHHHHHHHcCCEEEEeC
Q 024040 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTY-SIERRIILRALGAEVYLAD 122 (273)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~-~~~~~~~~~~~Ga~v~~~~ 122 (273)
.+.+|+..+|.-|.++|......|.+++++..... .....+.++..|+++..+.
T Consensus 6 ~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~ 60 (253)
T PRK08217 6 KVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGTEVRGYA 60 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEE
Confidence 45577778899999999998888988766544321 1123344556688776554
No 253
>PRK06181 short chain dehydrogenase; Provisional
Probab=50.70 E-value=1.2e+02 Score=25.44 Aligned_cols=53 Identities=23% Similarity=0.216 Sum_probs=35.3
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeC
Q 024040 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLAD 122 (273)
Q Consensus 70 ~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~ 122 (273)
+.+|+..+|.-|.+++......|.+++++...... ....+.++..|.++..+.
T Consensus 3 ~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~ 56 (263)
T PRK06181 3 VVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGGEALVVP 56 (263)
T ss_pred EEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 34778888889999999888899987777653211 122334555677776554
No 254
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=50.69 E-value=84 Score=29.68 Aligned_cols=50 Identities=22% Similarity=0.198 Sum_probs=38.8
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecCCC--------------C----HHHHHHHHHcCCEEEE
Q 024040 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTY--------------S----IERRIILRALGAEVYL 120 (273)
Q Consensus 71 ~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~--------------~----~~~~~~~~~~Ga~v~~ 120 (273)
.|+...+|-.|++.|..+++.|.++++|-.... + ...++.++.+|.+++.
T Consensus 145 ~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~ 212 (471)
T PRK12810 145 KVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRT 212 (471)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEe
Confidence 599999999999999999999999998864321 1 1235667888988764
No 255
>PRK07478 short chain dehydrogenase; Provisional
Probab=50.63 E-value=1.4e+02 Score=25.06 Aligned_cols=72 Identities=18% Similarity=0.040 Sum_probs=42.3
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCCC-CChhHHHHHHHHHHHh
Q 024040 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLADPA-VGFEGFVKKGEEILNR 140 (273)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~ 140 (273)
.+.+|+..+|.-|.++|..-.+.|.+++++...... ..-...++..|.++..+..+ .+.++..+...+..++
T Consensus 7 k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (254)
T PRK07478 7 KVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVER 80 (254)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 345777788889999999888899987776543111 11233455667777655432 2233344444444443
No 256
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=50.61 E-value=1.9e+02 Score=25.89 Aligned_cols=52 Identities=13% Similarity=0.045 Sum_probs=30.1
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCC
Q 024040 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPA 124 (273)
Q Consensus 72 vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~ 124 (273)
|+..+++..++.++..+- ++-.-.|+++.-+-..-....+..|++++.++.+
T Consensus 79 i~it~G~~~~l~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~ 130 (351)
T PRK14807 79 IFVGNGSDEIIHLIMLAF-INKGDVVIYPHPSFAMYSVYSKIAGAVEIPVKLK 130 (351)
T ss_pred EEEecCHHHHHHHHHHHh-cCCCCEEEEeCCChHHHHHHHHHcCCeEEEeecC
Confidence 666666666666555442 2222334454433234455668899999988643
No 257
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=50.59 E-value=1.8e+02 Score=25.64 Aligned_cols=83 Identities=14% Similarity=0.093 Sum_probs=47.8
Q ss_pred CCceEE--EEeCCCCCCCchhhHHHHHHHHHHHHc-CCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHH
Q 024040 30 CVARIA--AKLEMMQPCSSVKDRIAYSMIKDAEDK-GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIE 106 (273)
Q Consensus 30 ~g~~l~--~K~E~~~ptGS~K~R~a~~~~~~a~~~-g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~ 106 (273)
.|+.++ +++|+. ..-+-+=.+...+..+.+. +.-..|. +++....|+.|.++|..++.+|.+++++-+. ..
T Consensus 112 ~gi~v~~~~~~~~v--a~~n~~~~Ae~ai~~al~~~~~~l~gk-~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~---~~ 185 (287)
T TIGR02853 112 AGVKLIELFERDDV--AIYNSIPTAEGAIMMAIEHTDFTIHGS-NVMVLGFGRTGMTIARTFSALGARVFVGARS---SA 185 (287)
T ss_pred CCCeEEEEEeccce--EEEccHhHHHHHHHHHHHhcCCCCCCC-EEEEEcChHHHHHHHHHHHHCCCEEEEEeCC---HH
Confidence 454444 444433 2222233455555555543 2112233 4888888999999999999999977766443 23
Q ss_pred HHHHHHHcCCEE
Q 024040 107 RRIILRALGAEV 118 (273)
Q Consensus 107 ~~~~~~~~Ga~v 118 (273)
+......+|.+.
T Consensus 186 ~~~~~~~~g~~~ 197 (287)
T TIGR02853 186 DLARITEMGLIP 197 (287)
T ss_pred HHHHHHHCCCee
Confidence 444555566553
No 258
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=50.42 E-value=1.6e+02 Score=25.93 Aligned_cols=55 Identities=29% Similarity=0.514 Sum_probs=39.7
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 024040 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEV 118 (273)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v 118 (273)
+...+.++.+.+|. .+|-.|.+++..|+.+|.+.++.+. .+..+...++.+|++-
T Consensus 155 ~~~~~~~g~~VlI~-g~g~vg~~~~~la~~~G~~~v~~~~--~~~~~~~~~~~~g~~~ 209 (341)
T cd08262 155 RRARLTPGEVALVI-GCGPIGLAVIAALKARGVGPIVASD--FSPERRALALAMGADI 209 (341)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEEC--CCHHHHHHHHHcCCcE
Confidence 45556777775555 4688888888899999988655543 3567788888899853
No 259
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=50.41 E-value=2.2e+02 Score=26.73 Aligned_cols=78 Identities=22% Similarity=0.157 Sum_probs=46.1
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHH----HHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEee
Q 024040 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRI----ILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYIL 147 (273)
Q Consensus 72 vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~----~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 147 (273)
.+..+||-.|+.++..+- ++---.|++|..+-..... .++.+|+++.+++...+. +..+.+ + .++...+|+
T Consensus 79 av~~~SG~aAi~~al~al-l~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~~~d~-~~l~~~--I-~~~Tk~I~~ 153 (432)
T PRK06702 79 AVATASGQAAIMLAVLNI-CSSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNPNLTA-DEIVAL--A-NDKTKLVYA 153 (432)
T ss_pred EEEECCHHHHHHHHHHHh-cCCCCEEEECCCchHHHHHHHHHHHHHCCCEEEEECCCCCH-HHHHHh--C-CcCCeEEEE
Confidence 677888988888877654 3333456666543322222 267899999999753222 222222 2 223367777
Q ss_pred CCCCCCc
Q 024040 148 GQFENPA 154 (273)
Q Consensus 148 ~~~~~~~ 154 (273)
+...||.
T Consensus 154 e~pgnP~ 160 (432)
T PRK06702 154 ESLGNPA 160 (432)
T ss_pred EcCCCcc
Confidence 7777776
No 260
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=50.20 E-value=59 Score=27.15 Aligned_cols=99 Identities=19% Similarity=0.203 Sum_probs=48.4
Q ss_pred CCCcchHhhhhchHHHHH----HhhC------CCcCEEEEecC-CCccHHHHHHH----HHhhCCCcEEEEEecCCCccc
Q 024040 151 ENPANPEIHYETTGPEIW----NDSG------GKVDAFIAGIG-TGGTVTGAGRF----LKEKNPNIKVYGIEPSESAVL 215 (273)
Q Consensus 151 ~~~~~~~~g~~t~~~Ei~----~q~~------~~~d~iv~p~G-~Gg~~~Gi~~~----~k~~~~~~~vigVe~~~~~~~ 215 (273)
+.-.++..||.+.+.+++ +++. ..+|.|++..| +|||=+|++.. +++.+|+..++.+-...+..
T Consensus 90 g~g~n~~~G~~~~~~~~~~~~~~~ir~~~e~~d~~~~~~i~~slgGGTGSG~~~~l~~~l~~~y~~~~~~~~~ilP~~~- 168 (216)
T PF00091_consen 90 GSGNNWAVGYYTFGEEALEEILEQIRKEIEKCDSLDGFFIVHSLGGGTGSGLGPVLAEMLREEYPKKPIISFSILPFSS- 168 (216)
T ss_dssp TSTTSHHHHHHHHHHHHHHHHHHHHHHHHHTSTTESEEEEEEESSSSHHHHHHHHHHHHHHHTSTTSEEEEEEEE-CGG-
T ss_pred cccccccccccccccccccccccccchhhccccccccceecccccceeccccccccchhhhccccccceeecccccccc-
Confidence 344455568876544443 2221 35777777655 45555555544 45666666665554322211
Q ss_pred cCCCCCCccccccCCCCCcccccccCCCeEEEeCHHHHHHHH
Q 024040 216 NGGQPGKHLIQGIGAGVIPPVLDVAMLDEVITVSSEEAIETS 257 (273)
Q Consensus 216 ~~~~~~~~~~~glg~~~~~~~~~~~~~d~~v~v~d~e~~~a~ 257 (273)
.+...+ ........-..++.|.++.++.+...+.+
T Consensus 169 -e~~~~~------~Na~~~l~~l~~~~d~~i~~dN~~l~~~~ 203 (216)
T PF00091_consen 169 -EGVVEP------YNALLSLSELQEYADSVILFDNDALYKIC 203 (216)
T ss_dssp -GSHHHH------HHHHHHHHHHHHTSSEEEEEEHHHHHHHH
T ss_pred -cccccc------ceehhHHHHHHHhCCEEEEEcHHHHHHHH
Confidence 000000 00001111234678888888876666544
No 261
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=50.15 E-value=1.5e+02 Score=24.62 Aligned_cols=56 Identities=20% Similarity=0.211 Sum_probs=37.0
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeCCC
Q 024040 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS--IERRIILRALGAEVYLADPA 124 (273)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~--~~~~~~~~~~Ga~v~~~~~~ 124 (273)
.+.+|+..+|--|.++|......|.++++....... +.....++..|.++..+..+
T Consensus 7 ~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D 64 (247)
T PRK12935 7 KVAIVTGGAKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGKEGHDVYAVQAD 64 (247)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCEEEEEcCCcHHHHHHHHHHHHhcCCeEEEEECC
Confidence 355788888889999999888889887765432211 12234455678888766543
No 262
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=50.10 E-value=1.7e+02 Score=25.39 Aligned_cols=54 Identities=30% Similarity=0.350 Sum_probs=37.1
Q ss_pred CCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH-cCCEEE
Q 024040 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRA-LGAEVY 119 (273)
Q Consensus 63 g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~-~Ga~v~ 119 (273)
+.+.++.+.+|...+|-.|.+++..|+.+|.+.+++.+ +..+...++. +|++-+
T Consensus 141 ~~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~---~~~~~~~~~~~~g~~~~ 195 (329)
T cd05288 141 GKPKPGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAG---SDEKCRWLVEELGFDAA 195 (329)
T ss_pred cCCCCCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHhhcCCceE
Confidence 44566666455555788999999999999997655543 3456666666 887533
No 263
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=50.06 E-value=1.5e+02 Score=27.08 Aligned_cols=52 Identities=23% Similarity=0.298 Sum_probs=34.1
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 024040 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (273)
Q Consensus 72 vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 123 (273)
++..++|..|..+|..+-..+-.-.|++|..+-......+...|++++.++-
T Consensus 51 ~v~~~sgt~al~lal~al~~~~Gd~Viv~~~~~~~~~~~~~~~G~~~v~vd~ 102 (379)
T PRK11658 51 AIAVSSATAGMHITLMALGIGPGDEVITPSLTWVSTLNMIVLLGATPVMVDV 102 (379)
T ss_pred EEEECCHHHHHHHHHHHcCCCCCCEEEECCCcHHHHHHHHHHcCCEEEEEec
Confidence 5666777777666665432222245667765555566777889999999874
No 264
>PLN02527 aspartate carbamoyltransferase
Probab=49.98 E-value=1.1e+02 Score=27.34 Aligned_cols=51 Identities=20% Similarity=0.196 Sum_probs=35.0
Q ss_pred EEeeCC---ChHHHHHHHHHHHc-CCeEEEEecCCC--CHHHHHHHHHcCCEEEEeC
Q 024040 72 LIELTS---GNTGIGLAFIAASR-GYKLIIIMPSTY--SIERRIILRALGAEVYLAD 122 (273)
Q Consensus 72 vv~~ss---GN~g~a~A~~a~~~-g~~~~i~~p~~~--~~~~~~~~~~~Ga~v~~~~ 122 (273)
|+-... +|.+.+++.+++++ |+.++++.|+.. +....+.++..|.++....
T Consensus 154 va~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~ 210 (306)
T PLN02527 154 VGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEESS 210 (306)
T ss_pred EEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEEc
Confidence 554443 35789988887776 899999998763 4444555666677776654
No 265
>PRK07454 short chain dehydrogenase; Provisional
Probab=49.92 E-value=1.3e+02 Score=24.90 Aligned_cols=70 Identities=21% Similarity=0.196 Sum_probs=41.1
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCCCC-ChhHHHHHHHHHHH
Q 024040 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLADPAV-GFEGFVKKGEEILN 139 (273)
Q Consensus 70 ~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~~~~-~~~~~~~~a~~~~~ 139 (273)
..+|+.++|..|.+++......|.+++++...... ......++..+.++..+..+. +.++..+...+..+
T Consensus 8 ~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 79 (241)
T PRK07454 8 RALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLE 79 (241)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 44777788999999999999999988777643211 112233445566665554332 23333333444433
No 266
>PRK07890 short chain dehydrogenase; Provisional
Probab=49.89 E-value=1.4e+02 Score=24.92 Aligned_cols=54 Identities=20% Similarity=0.190 Sum_probs=35.2
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeC
Q 024040 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLAD 122 (273)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~ 122 (273)
.+.+|+..+|.-|.++|......|.+++++-..... ......++..|.++..+.
T Consensus 6 k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 60 (258)
T PRK07890 6 KVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGRRALAVP 60 (258)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEe
Confidence 455888888999999999999999987766543211 112233444566665544
No 267
>PRK08643 acetoin reductase; Validated
Probab=49.82 E-value=1.5e+02 Score=24.72 Aligned_cols=54 Identities=15% Similarity=0.152 Sum_probs=35.4
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCH-HHHHHHHHcCCEEEEeCC
Q 024040 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSI-ERRIILRALGAEVYLADP 123 (273)
Q Consensus 70 ~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~-~~~~~~~~~Ga~v~~~~~ 123 (273)
..+|+..+|.-|.++|....+.|.+++++....... .....++..|.++..+..
T Consensus 4 ~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 58 (256)
T PRK08643 4 VALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVKA 58 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEC
Confidence 447888888899999999888999877665432111 122334556777766543
No 268
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=49.76 E-value=2.1e+02 Score=26.54 Aligned_cols=56 Identities=16% Similarity=0.206 Sum_probs=38.3
Q ss_pred CCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 024040 68 GKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (273)
Q Consensus 68 g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 123 (273)
+.+.+|+..+|.-|.++|....+.|.+++++-.+.......+..+..+++.+.++-
T Consensus 210 g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv 265 (450)
T PRK08261 210 GKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAAGEALAAVANRVGGTALALDI 265 (450)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHHHHHcCCeEEEEeC
Confidence 34557788888899999999888999977765432222333334456777777764
No 269
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=49.74 E-value=1.7e+02 Score=25.09 Aligned_cols=57 Identities=26% Similarity=0.340 Sum_probs=39.8
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 024040 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (273)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 120 (273)
+...+.++.+.+|...+|..|.+++..++.+|.+.+++.+ +..+.+.++.+|++.+.
T Consensus 133 ~~~~~~~~~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~~~ 189 (325)
T TIGR02824 133 QRGGLKAGETVLIHGGASGIGTTAIQLAKAFGARVFTTAG---SDEKCAACEALGADIAI 189 (325)
T ss_pred HhcCCCCCCEEEEEcCcchHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCcEEE
Confidence 4456777777566666788999999999999998665543 23455566778875443
No 270
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=49.59 E-value=1.9e+02 Score=25.76 Aligned_cols=73 Identities=23% Similarity=0.241 Sum_probs=50.4
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEe-cCCCCHHHHHHHHHcC-CEEEEeCCCCChhHHHHHHHHHHHhCC
Q 024040 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIM-PSTYSIERRIILRALG-AEVYLADPAVGFEGFVKKGEEILNRTP 142 (273)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~-p~~~~~~~~~~~~~~G-a~v~~~~~~~~~~~~~~~a~~~~~~~~ 142 (273)
...+||.+++--|+++|.--++.|.+.++.= -+....+..+.++..| ++-+.|+-+ +.++..+.+.+..++.+
T Consensus 39 ~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis-~~eei~~~a~~Vk~e~G 113 (300)
T KOG1201|consen 39 EIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDIS-DREEIYRLAKKVKKEVG 113 (300)
T ss_pred CEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcCceeEEEecCC-CHHHHHHHHHHHHHhcC
Confidence 4557777777789999999888888554432 2334456677777667 444566653 46788888888888774
No 271
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=49.48 E-value=35 Score=33.80 Aligned_cols=51 Identities=24% Similarity=0.307 Sum_probs=38.4
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCC---------C---------HHHHHHHHHcCCEEEE
Q 024040 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTY---------S---------IERRIILRALGAEVYL 120 (273)
Q Consensus 70 ~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~---------~---------~~~~~~~~~~Ga~v~~ 120 (273)
..|+...+|-.|++.|+..++.|.+++||=.... + ....+.++.+|.+++.
T Consensus 328 ~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~ 396 (654)
T PRK12769 328 KRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFEL 396 (654)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEEC
Confidence 3499999999999999999999999888843211 1 1235567788988764
No 272
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase. This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).
Probab=49.36 E-value=1.1e+02 Score=27.92 Aligned_cols=54 Identities=17% Similarity=0.095 Sum_probs=35.7
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCC
Q 024040 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPA 124 (273)
Q Consensus 71 ~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~ 124 (273)
.++..++|..|+.+++.+-..+-.-.|++|..+-......+...|++++.++-+
T Consensus 48 ~~v~~~sgt~aL~~~l~al~~~pGd~Viv~~~t~~~~~~~~~~~G~~~v~vd~d 101 (376)
T TIGR02379 48 KALLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDIR 101 (376)
T ss_pred eEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHHHHcCCEEEEEecC
Confidence 477777777776665544322223456677766666677778889999999753
No 273
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=49.25 E-value=1.4e+02 Score=26.72 Aligned_cols=55 Identities=33% Similarity=0.317 Sum_probs=36.1
Q ss_pred CCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 024040 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (273)
Q Consensus 63 g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 120 (273)
+...+|.+ ++...+|-.|.+++..|+.+|.+.+++... +..+...++.+|++.+.
T Consensus 176 ~~~~~g~~-vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~--~~~~~~~~~~~Ga~~~i 230 (357)
T PLN02514 176 GLKQSGLR-GGILGLGGVGHMGVKIAKAMGHHVTVISSS--DKKREEALEHLGADDYL 230 (357)
T ss_pred ccCCCCCe-EEEEcccHHHHHHHHHHHHCCCeEEEEeCC--HHHHHHHHHhcCCcEEe
Confidence 44456666 444467889999999999999986555432 22333455679997443
No 274
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=49.17 E-value=1.4e+02 Score=25.82 Aligned_cols=48 Identities=27% Similarity=0.340 Sum_probs=34.7
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 024040 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (273)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 119 (273)
.+.+|...+|..|.+++..|+.+|.+++++.+ +..+.+.++.+|++-+
T Consensus 148 ~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~~ 195 (325)
T cd05280 148 GPVLVTGATGGVGSIAVAILAKLGYTVVALTG---KEEQADYLKSLGASEV 195 (325)
T ss_pred CEEEEECCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHhcCCcEE
Confidence 35344455699999999999999999554433 4567777888998544
No 275
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=49.16 E-value=1.8e+02 Score=25.32 Aligned_cols=54 Identities=30% Similarity=0.379 Sum_probs=38.6
Q ss_pred CCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 024040 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (273)
Q Consensus 63 g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 119 (273)
+.+.++...+|...+|-.|.+++..|+.+|.+.+++.. +..+...++.+|++-+
T Consensus 135 ~~~~~~~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~v 188 (329)
T cd08250 135 GEMKSGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCS---SDEKAEFLKSLGCDRP 188 (329)
T ss_pred cCCCCCCEEEEEeCccHHHHHHHHHHHHcCCeEEEEeC---cHHHHHHHHHcCCceE
Confidence 45667777566666788999999999999998655543 3456666677887443
No 276
>PRK08303 short chain dehydrogenase; Provisional
Probab=49.02 E-value=1.7e+02 Score=25.77 Aligned_cols=72 Identities=19% Similarity=0.116 Sum_probs=41.9
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCC-----------CHHHHHHHHHcCCEEEEeCCC-CChhHHHHHHHH
Q 024040 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTY-----------SIERRIILRALGAEVYLADPA-VGFEGFVKKGEE 136 (273)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~-----------~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~ 136 (273)
...+|+..++--|.++|..-.+.|.+++++-.... -....+.++..|.+++.+..+ .+.++..+...+
T Consensus 9 k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~ 88 (305)
T PRK08303 9 KVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRALVER 88 (305)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHH
Confidence 34577777777888888888889998777654311 012234556677776554332 223344444444
Q ss_pred HHHh
Q 024040 137 ILNR 140 (273)
Q Consensus 137 ~~~~ 140 (273)
..++
T Consensus 89 ~~~~ 92 (305)
T PRK08303 89 IDRE 92 (305)
T ss_pred HHHH
Confidence 4443
No 277
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=48.99 E-value=1.5e+02 Score=24.62 Aligned_cols=54 Identities=13% Similarity=0.182 Sum_probs=36.8
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeC
Q 024040 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS--IERRIILRALGAEVYLAD 122 (273)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~--~~~~~~~~~~Ga~v~~~~ 122 (273)
...+|+..+|.-|.++|......|.+++++...... ......++..|.++....
T Consensus 4 k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (246)
T PRK12938 4 RIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNSPRRVKWLEDQKALGFDFIASE 59 (246)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHhcCCcEEEEE
Confidence 345888888999999999999999887765533221 123455566788776544
No 278
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=48.88 E-value=70 Score=27.58 Aligned_cols=48 Identities=27% Similarity=0.301 Sum_probs=28.5
Q ss_pred eEEEeeCCChHH---HHHHHHHHHcCCeEEEEecCCCCH----HHHHHHHHcCCE
Q 024040 70 TVLIELTSGNTG---IGLAFIAASRGYKLIIIMPSTYSI----ERRIILRALGAE 117 (273)
Q Consensus 70 ~~vv~~ssGN~g---~a~A~~a~~~g~~~~i~~p~~~~~----~~~~~~~~~Ga~ 117 (273)
+.+|.+..||.| .++|...+..|+++.+|+++..+. ...+.++.+|..
T Consensus 62 ~V~VlcG~GNNGGDGlv~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~g~~ 116 (246)
T PLN03050 62 RVLLVCGPGNNGGDGLVAARHLAHFGYEVTVCYPKQSSKPHYENLVTQCEDLGIP 116 (246)
T ss_pred eEEEEECCCCCchhHHHHHHHHHHCCCeEEEEEcCCCChHHHHHHHHHHHHcCCC
Confidence 445666767654 555556666799999998653221 123344555544
No 279
>PRK06836 aspartate aminotransferase; Provisional
Probab=48.71 E-value=2.1e+02 Score=26.02 Aligned_cols=51 Identities=14% Similarity=0.191 Sum_probs=30.6
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 024040 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (273)
Q Consensus 72 vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 123 (273)
|+..++++.++.++..+- ..-.-.|+++...-..-...++.+|++++.++.
T Consensus 99 i~~t~G~~~al~~~~~~l-~~~gd~Vli~~p~~~~~~~~~~~~g~~v~~v~~ 149 (394)
T PRK06836 99 IVMTCGAAGALNVALKAI-LNPGDEVIVFAPYFVEYRFYVDNHGGKLVVVPT 149 (394)
T ss_pred EEEeCChHHHHHHHHHHh-cCCCCEEEEcCCCCccHHHHHHHcCCEEEEEec
Confidence 776777777766555432 222234455543333345567789999998864
No 280
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=48.69 E-value=35 Score=27.74 Aligned_cols=41 Identities=29% Similarity=0.378 Sum_probs=30.6
Q ss_pred hchHHHHHHhhCCCcCEEEEecCCCccHHHHHHHHHhhCCCcEEEEE
Q 024040 161 ETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGI 207 (273)
Q Consensus 161 ~t~~~Ei~~q~~~~~d~iv~p~G~Gg~~~Gi~~~~k~~~~~~~vigV 207 (273)
...+.++.++ +-.||.|+.-.|=|.+ +++|+.+|++++++-
T Consensus 54 ~~a~~~L~~~-Gf~PDvI~~H~GWGe~-----Lflkdv~P~a~li~Y 94 (171)
T PF12000_consen 54 ARAARQLRAQ-GFVPDVIIAHPGWGET-----LFLKDVFPDAPLIGY 94 (171)
T ss_pred HHHHHHHHHc-CCCCCEEEEcCCcchh-----hhHHHhCCCCcEEEE
Confidence 3444555555 4579999888887775 479999999999985
No 281
>PRK06194 hypothetical protein; Provisional
Probab=48.62 E-value=1.7e+02 Score=24.95 Aligned_cols=55 Identities=29% Similarity=0.279 Sum_probs=36.0
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCC
Q 024040 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLADP 123 (273)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~~ 123 (273)
.+.+|+..+|.-|.++|......|.+++++-..... ......+...|.++..+..
T Consensus 7 k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 62 (287)
T PRK06194 7 KVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRT 62 (287)
T ss_pred CEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEEC
Confidence 345888888889999999888889987766432111 1223344455777766554
No 282
>PRK05876 short chain dehydrogenase; Provisional
Probab=48.57 E-value=1.6e+02 Score=25.34 Aligned_cols=55 Identities=18% Similarity=0.082 Sum_probs=35.6
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCC
Q 024040 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLADP 123 (273)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~~ 123 (273)
...+|+..+|--|.++|..-...|.+++++...... ....+.++..|.++..+..
T Consensus 7 k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~ 62 (275)
T PRK05876 7 RGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMC 62 (275)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeC
Confidence 445888888889999999988899987665432111 1123345556777765543
No 283
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=48.51 E-value=95 Score=30.01 Aligned_cols=51 Identities=16% Similarity=0.025 Sum_probs=39.5
Q ss_pred EEeeCC---ChHHHHHHHHHHHcC-CeEEEEecCCC--CHHHHHHHHHcCCEEEEeC
Q 024040 72 LIELTS---GNTGIGLAFIAASRG-YKLIIIMPSTY--SIERRIILRALGAEVYLAD 122 (273)
Q Consensus 72 vv~~ss---GN~g~a~A~~a~~~g-~~~~i~~p~~~--~~~~~~~~~~~Ga~v~~~~ 122 (273)
|+-... +|.+.|++..++.+| ++++++.|+.. +...++.++..|+.+..+.
T Consensus 177 Va~vGD~~~~rva~Sl~~~l~~~g~~~v~l~~P~~~~~p~~~~~~a~~~G~~v~i~~ 233 (525)
T PRK13376 177 IALVGDLLHGRTVHSKVNGLKIFKNVKVDLIAPEELAMPEHYVEKMKKNGFEVRIFS 233 (525)
T ss_pred EEEECCCCCCcHHHHHHHHHHhcCCcEEEEECCccccCCHHHHHHHHHcCCeEEEEc
Confidence 555544 689999999999998 99999999864 4445566667888887664
No 284
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=48.37 E-value=1.6e+02 Score=24.48 Aligned_cols=33 Identities=15% Similarity=0.220 Sum_probs=27.7
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecCCC
Q 024040 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTY 103 (273)
Q Consensus 71 ~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~ 103 (273)
.++...+|..|..-+......|-+++|+-|+..
T Consensus 11 ~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~ 43 (205)
T TIGR01470 11 AVLVVGGGDVALRKARLLLKAGAQLRVIAEELE 43 (205)
T ss_pred eEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence 388889999999888888889999998888644
No 285
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=48.28 E-value=1.4e+02 Score=31.46 Aligned_cols=31 Identities=16% Similarity=0.229 Sum_probs=28.1
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEec
Q 024040 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMP 100 (273)
Q Consensus 70 ~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p 100 (273)
+.|+...+|-.|.++|++.++.|.++++|=.
T Consensus 384 KKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~ 414 (1028)
T PRK06567 384 YNILVTGLGPAGFSLSYYLLRSGHNVTAIDG 414 (1028)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCeEEEEcc
Confidence 3499999999999999999999999999964
No 286
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=48.26 E-value=35 Score=27.74 Aligned_cols=30 Identities=27% Similarity=0.461 Sum_probs=24.8
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecC
Q 024040 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPS 101 (273)
Q Consensus 72 vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~ 101 (273)
|....+|..|.++|+.+.+.|++++++-+.
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~ 31 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRS 31 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SS
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 555678999999999999999999999764
No 287
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=48.06 E-value=80 Score=30.57 Aligned_cols=51 Identities=24% Similarity=0.212 Sum_probs=40.1
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 024040 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (273)
Q Consensus 70 ~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 123 (273)
.+++.+..|+.|+.+|-.-+..|.+++++=. ++++.+.++.+|.+++.-+.
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~---d~~~~~~~~~~g~~~i~GD~ 468 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIET---SRTRVDELRERGIRAVLGNA 468 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEEC---CHHHHHHHHHCCCeEEEcCC
Confidence 3589999999999999999999999876643 45677777778877776654
No 288
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=47.96 E-value=1.6e+02 Score=24.34 Aligned_cols=55 Identities=15% Similarity=0.184 Sum_probs=37.3
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCC
Q 024040 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLADP 123 (273)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~~ 123 (273)
.+.+|+..+|.-|.+++....+.|.+++++...... ....+.++..+.++..+..
T Consensus 7 ~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~ 62 (251)
T PRK12826 7 RVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQV 62 (251)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEC
Confidence 355788888999999999988889987776654211 2234455666777665543
No 289
>PRK08278 short chain dehydrogenase; Provisional
Probab=47.95 E-value=1.8e+02 Score=24.88 Aligned_cols=55 Identities=22% Similarity=0.237 Sum_probs=37.3
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCH--------HHHHHHHHcCCEEEEeCC
Q 024040 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSI--------ERRIILRALGAEVYLADP 123 (273)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~--------~~~~~~~~~Ga~v~~~~~ 123 (273)
.+.+|+..+|--|.++|....+.|.+++++.....+. ...+.++..|.+++.+..
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 69 (273)
T PRK08278 7 KTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVG 69 (273)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEe
Confidence 3457777888899999999989999988876543211 112345567877766543
No 290
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=47.91 E-value=1.5e+02 Score=25.15 Aligned_cols=51 Identities=24% Similarity=0.257 Sum_probs=35.8
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCe-EEEEecCCCCHHHHHHHHHcC
Q 024040 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYK-LIIIMPSTYSIERRIILRALG 115 (273)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~-~~i~~p~~~~~~~~~~~~~~G 115 (273)
....+.++.+-+|. ..|..|.++...|+.+|.+ ++++. .+..+....+.+|
T Consensus 91 ~~~~~~~g~~vlI~-g~g~vg~~~i~~a~~~g~~~vi~~~---~~~~~~~~~~~~g 142 (277)
T cd08255 91 RDAEPRLGERVAVV-GLGLVGLLAAQLAKAAGAREVVGVD---PDAARRELAEALG 142 (277)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCcEEEEC---CCHHHHHHHHHcC
Confidence 34556777774444 5788899999999999988 44432 2456677777787
No 291
>PRK05866 short chain dehydrogenase; Provisional
Probab=47.89 E-value=1.4e+02 Score=25.94 Aligned_cols=53 Identities=15% Similarity=0.088 Sum_probs=34.6
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeC
Q 024040 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLAD 122 (273)
Q Consensus 70 ~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~ 122 (273)
+.+|+..+|.-|.++|......|.+++++...... ....+.+...|.++..+.
T Consensus 42 ~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~ 95 (293)
T PRK05866 42 RILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAMAVP 95 (293)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEE
Confidence 44788888889999999988889988777654211 112233444566665544
No 292
>PRK01688 histidinol-phosphate aminotransferase; Provisional
Probab=47.81 E-value=1.1e+02 Score=27.35 Aligned_cols=52 Identities=13% Similarity=0.047 Sum_probs=30.1
Q ss_pred EEeeCCChHHHHHHHHHHHcCCe-EEEEecCCCCHHHHHHHHHcCCEEEEeCCC
Q 024040 72 LIELTSGNTGIGLAFIAASRGYK-LIIIMPSTYSIERRIILRALGAEVYLADPA 124 (273)
Q Consensus 72 vv~~ssGN~g~a~A~~a~~~g~~-~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~ 124 (273)
|+...++..++.++..+- .+-. -.|+++.-+-..-....+.+|++++.++-+
T Consensus 77 I~~~~Gs~e~i~~~~~~~-~~~g~~~vli~~P~y~~y~~~~~~~G~~~~~v~~~ 129 (351)
T PRK01688 77 VLVSRGADEGIELLIRAF-CEPGKDAILYCPPTYGMYSVSAETIGVEIRTVPTL 129 (351)
T ss_pred EEEcCCHHHHHHHHHHHh-cCCCCCEEEEcCCCHHHHHHHHHHcCCEEEEeecC
Confidence 776667777776666443 2221 234444322233455667899999988643
No 293
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=47.78 E-value=1.7e+02 Score=25.60 Aligned_cols=50 Identities=24% Similarity=0.245 Sum_probs=35.1
Q ss_pred CCeEEEeeCCChHHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 024040 68 GKTVLIELTSGNTGIGLAFIAASR-GYKLIIIMPSTYSIERRIILRALGAEVYL 120 (273)
Q Consensus 68 g~~~vv~~ssGN~g~a~A~~a~~~-g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 120 (273)
+.+.+|...+|..|.+++..|+.+ |.+++.+.. +..+.+.++.+|++-+.
T Consensus 149 g~~vlV~ga~g~vg~~~~~~ak~~~G~~vi~~~~---~~~~~~~l~~~g~~~~~ 199 (336)
T TIGR02817 149 KRALLIIGGAGGVGSILIQLARQLTGLTVIATAS---RPESQEWVLELGAHHVI 199 (336)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHhCCCEEEEEcC---cHHHHHHHHHcCCCEEE
Confidence 566455555688998888889987 988766543 24567777788885443
No 294
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=47.53 E-value=1.6e+02 Score=24.18 Aligned_cols=54 Identities=28% Similarity=0.270 Sum_probs=36.7
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCH-HHHHHHHHcCCEEEEeC
Q 024040 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSI-ERRIILRALGAEVYLAD 122 (273)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~-~~~~~~~~~Ga~v~~~~ 122 (273)
.+.+|+..+|..|..++......|.+++++....... .....++..|.++..+.
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 60 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGEARVLV 60 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCCceEEEE
Confidence 3457888889999999999888899976655432221 12344556787777654
No 295
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=47.37 E-value=1.8e+02 Score=24.78 Aligned_cols=120 Identities=20% Similarity=0.096 Sum_probs=64.7
Q ss_pred HHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHc---CCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchH
Q 024040 81 GIGLAFIAASRGYKLIIIMPSTYSIERRIILRAL---GAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPE 157 (273)
Q Consensus 81 g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~---Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 157 (273)
|-+.|-+.+.+|+++.++-++..+...+..+..+ |.+|....+... +......+.+..-....+..|.+-...
T Consensus 86 G~~Ta~~l~~~G~~~~~~p~~~~~~~l~~~l~~~~~~~~~vl~~~~~~~---r~~l~~~L~~~G~~v~~~~~Y~~~~~~- 161 (248)
T COG1587 86 GEKTAEALRKLGIKVDFIPEDGDSEGLLEELPELLKGGKRVLILRGNGG---REVLEEKLEERGAEVREVEVYRTEPPP- 161 (248)
T ss_pred cHHHHHHHHHhCCCCCcCCCccchHHHHHHhhhhccCCCeEEEEcCCCc---hHHHHHHHHhCCCEEEEEeeeeecCCC-
Confidence 5677888899999988765656677777777777 678776654422 122233343332233445555432221
Q ss_pred hhhhchHHHHHHhhCCCcCEEEEecCCCccHHHHHHHHHhhCC----CcEEEEEec
Q 024040 158 IHYETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNP----NIKVYGIEP 209 (273)
Q Consensus 158 ~g~~t~~~Ei~~q~~~~~d~iv~p~G~Gg~~~Gi~~~~k~~~~----~~~vigVe~ 209 (273)
+. ...++.......+|+|+...+ .++-.+...+..... +.+++.+-|
T Consensus 162 --~~-~~~~~~~~~~~~~d~v~ftS~--~~v~~~~~~~~~~~~~~~~~~~v~~IG~ 212 (248)
T COG1587 162 --LD-EATLIELLKLGEVDAVVFTSS--SAVRALLALAPESGIEFLERKRVASIGP 212 (248)
T ss_pred --cc-HHHHHHHHHhCCCCEEEEeCH--HHHHHHHHHccccchhHhhCceEEEecH
Confidence 22 111111111256899988854 445555555544443 245555543
No 296
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=47.32 E-value=1.3e+02 Score=26.52 Aligned_cols=48 Identities=25% Similarity=0.293 Sum_probs=34.5
Q ss_pred CCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 024040 68 GKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (273)
Q Consensus 68 g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 119 (273)
|.+.+|...+|..|.+++..|+.+|+++++.... .+.+.++.+|++-+
T Consensus 163 g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~----~~~~~~~~~g~~~~ 210 (350)
T cd08248 163 GKRVLILGGSGGVGTFAIQLLKAWGAHVTTTCST----DAIPLVKSLGADDV 210 (350)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCc----chHHHHHHhCCceE
Confidence 6664555557899999999999999986655432 36667777887533
No 297
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=47.31 E-value=1e+02 Score=28.96 Aligned_cols=52 Identities=25% Similarity=0.247 Sum_probs=38.9
Q ss_pred CCeEEEeeCCChHHHHHHHHHHHcCC-eEEEEecCC-----CCHHHHHHHHHcCCEEEE
Q 024040 68 GKTVLIELTSGNTGIGLAFIAASRGY-KLIIIMPST-----YSIERRIILRALGAEVYL 120 (273)
Q Consensus 68 g~~~vv~~ssGN~g~a~A~~a~~~g~-~~~i~~p~~-----~~~~~~~~~~~~Ga~v~~ 120 (273)
+.+ |+...+||.|.-+|..+.++|. +++++.+.. ......+.++..|.+++.
T Consensus 273 g~~-VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~~~~~~~~~~~GV~i~~ 330 (457)
T PRK11749 273 GKR-VVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPASEEEVEHAKEEGVEFEW 330 (457)
T ss_pred CCe-EEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHCCCEEEe
Confidence 344 8888999999999999999998 788876532 133445667778888765
No 298
>PRK14031 glutamate dehydrogenase; Provisional
Probab=47.30 E-value=86 Score=29.62 Aligned_cols=52 Identities=13% Similarity=-0.045 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEec
Q 024040 49 DRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMP 100 (273)
Q Consensus 49 ~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p 100 (273)
-||..+.+..+.+...+....++|+.-..||-|..+|.....+|.+++.+.+
T Consensus 208 g~Gv~~~~~~~~~~~g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD 259 (444)
T PRK14031 208 GYGNIYFLMEMLKTKGTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSD 259 (444)
T ss_pred HHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 4677777777654332333344588899999999999999999999998877
No 299
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=47.28 E-value=1.6e+02 Score=24.40 Aligned_cols=55 Identities=18% Similarity=0.104 Sum_probs=36.0
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCH-HHHHHHHHcCCEEEEeCC
Q 024040 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSI-ERRIILRALGAEVYLADP 123 (273)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~-~~~~~~~~~Ga~v~~~~~ 123 (273)
.+.+|+..+|.-|.++|......|.+++++....... .....++..+.++..+..
T Consensus 4 ~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 59 (250)
T TIGR03206 4 KTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGGNAQAFAC 59 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEEc
Confidence 3458888889999999999888899877765432111 112334555666665554
No 300
>cd01011 nicotinamidase Nicotinamidase/pyrazinamidase (PZase). Nicotinamidase, a ubiquitous enzyme in prokaryotes, converts nicotinamide to nicotinic acid (niacin) and ammonia, which in turn can be recycled to make nicotinamide adenine dinucleotide (NAD). The same enzyme is also called pyrazinamidase, because in converts the tuberculosis drug pyrazinamide (PZA) into its active form pyrazinoic acid (POA).
Probab=47.25 E-value=1.2e+02 Score=24.94 Aligned_cols=60 Identities=10% Similarity=0.128 Sum_probs=38.2
Q ss_pred HHHHHHcCCCCCCCeEEEeeCCChHHH-HHHHHHHHcCCeEEEEecCCC--C----HHHHHHHHHcCCEEE
Q 024040 56 IKDAEDKGLITPGKTVLIELTSGNTGI-GLAFIAASRGYKLIIIMPSTY--S----IERRIILRALGAEVY 119 (273)
Q Consensus 56 ~~~a~~~g~~~~g~~~vv~~ssGN~g~-a~A~~a~~~g~~~~i~~p~~~--~----~~~~~~~~~~Ga~v~ 119 (273)
...+.+.|. ++-+|+.-..|.+. +.|..|...|++++++..-.. + ..-++.|+..|++|+
T Consensus 130 ~~~L~~~~i----~~lii~G~~t~~CV~~T~~~a~~~g~~v~v~~Da~~~~~~~~~~~al~~~~~~G~~i~ 196 (196)
T cd01011 130 AEYLRERGI----DRVDVVGLATDYCVKATALDALKAGFEVRVLEDACRAVDPETIERAIEEMKEAGVVLV 196 (196)
T ss_pred HHHHHHCCC----CEEEEEEecccHHHHHHHHHHHHCCCEEEEeccccCCCCHHHHHHHHHHHHHccCEEC
Confidence 344445564 45456666677774 566778889999888876432 2 223666777788763
No 301
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=47.04 E-value=78 Score=26.77 Aligned_cols=55 Identities=16% Similarity=0.155 Sum_probs=39.3
Q ss_pred CCCCCCCeEEEeeCCCh----HHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 024040 63 GLITPGKTVLIELTSGN----TGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAE 117 (273)
Q Consensus 63 g~~~~g~~~vv~~ssGN----~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~ 117 (273)
|.+.+|...+|+...|. .+..+++.+.+.|-++..|.-+..+..-++.++.+|-+
T Consensus 16 GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i~~~~~~~g~~ 74 (237)
T TIGR03877 16 GGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQVRRNMAQFGWD 74 (237)
T ss_pred CCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHHHHHHHHhCCC
Confidence 44677777677775554 45555666667799998888777777778888888864
No 302
>PRK05867 short chain dehydrogenase; Provisional
Probab=46.71 E-value=1.7e+02 Score=24.47 Aligned_cols=54 Identities=19% Similarity=0.092 Sum_probs=34.5
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeC
Q 024040 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLAD 122 (273)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~ 122 (273)
...+|+..+|.-|.++|..-...|.+++++-..... +...+.++..|.++..+.
T Consensus 10 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~ 64 (253)
T PRK05867 10 KRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVC 64 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 345788888889999999888889987665432111 112334455676765544
No 303
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=46.69 E-value=1.6e+02 Score=25.96 Aligned_cols=54 Identities=28% Similarity=0.274 Sum_probs=36.5
Q ss_pred cCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 024040 62 KGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEV 118 (273)
Q Consensus 62 ~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v 118 (273)
...+.++.+.+| ..+|-.|.++...|+.+|...++.+ ..+..+.+.++.+|++-
T Consensus 162 ~~~~~~~~~VlI-~g~g~vg~~~iqlak~~g~~~v~~~--~~~~~~~~~~~~~g~~~ 215 (347)
T cd05278 162 LAGIKPGSTVAV-IGAGPVGLCAVAGARLLGAARIIAV--DSNPERLDLAKEAGATD 215 (347)
T ss_pred hcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCCEEEEE--eCCHHHHHHHHHhCCcE
Confidence 345667777555 4567788888888999997434444 23457777778888654
No 304
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=46.58 E-value=1.2e+02 Score=28.45 Aligned_cols=51 Identities=20% Similarity=0.176 Sum_probs=37.6
Q ss_pred EEeeCC---ChHHHHHHHHHHHc-CCeEEEEecCCC--CHHHHHHHHHcCCEEEEeC
Q 024040 72 LIELTS---GNTGIGLAFIAASR-GYKLIIIMPSTY--SIERRIILRALGAEVYLAD 122 (273)
Q Consensus 72 vv~~ss---GN~g~a~A~~a~~~-g~~~~i~~p~~~--~~~~~~~~~~~Ga~v~~~~ 122 (273)
|+-... +|.+.+++..++.+ |++++++.|+.. +...++.++..|+++..+.
T Consensus 244 Ia~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~~~ 300 (429)
T PRK11891 244 IALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQTD 300 (429)
T ss_pred EEEECcCCCChHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEEEc
Confidence 555544 68999999996665 999999999864 3444566666788887765
No 305
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=46.52 E-value=1.6e+02 Score=25.96 Aligned_cols=52 Identities=23% Similarity=0.288 Sum_probs=37.1
Q ss_pred CCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 024040 65 ITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (273)
Q Consensus 65 ~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 120 (273)
+.++.+.+| ...|..|.+++..|+.+|++.+++.+ +..+.+.++.+|++-+.
T Consensus 167 ~~~g~~vlV-~g~g~vG~~~~~~a~~~G~~v~~~~~---~~~~~~~~~~~g~~~vi 218 (337)
T cd05283 167 VGPGKRVGV-VGIGGLGHLAVKFAKALGAEVTAFSR---SPSKKEDALKLGADEFI 218 (337)
T ss_pred CCCCCEEEE-ECCcHHHHHHHHHHHHcCCeEEEEcC---CHHHHHHHHHcCCcEEe
Confidence 566777555 45788999999999999997655543 34566777778876544
No 306
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=46.45 E-value=1.6e+02 Score=24.53 Aligned_cols=54 Identities=17% Similarity=0.156 Sum_probs=35.1
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeC
Q 024040 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLAD 122 (273)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~ 122 (273)
.+.+|+..+|.-|.++|......|.+++++...... ..-...++..|.++..+.
T Consensus 12 k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 66 (256)
T PRK06124 12 QVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGAAEALA 66 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEE
Confidence 455778888889999999888889987776553211 122333455676555544
No 307
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=46.44 E-value=45 Score=25.69 Aligned_cols=35 Identities=34% Similarity=0.469 Sum_probs=21.9
Q ss_pred CCCCCeEEEeeCCChHHH--HHHHHHHHcCCeEEEEe
Q 024040 65 ITPGKTVLIELTSGNTGI--GLAFIAASRGYKLIIIM 99 (273)
Q Consensus 65 ~~~g~~~vv~~ssGN~g~--a~A~~a~~~g~~~~i~~ 99 (273)
++||+--|+.++|||+.. ..+..|+..|++++.+.
T Consensus 101 ~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIalT 137 (138)
T PF13580_consen 101 IRPGDVLIVISNSGNSPNVIEAAEEAKERGMKVIALT 137 (138)
T ss_dssp --TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 456666566667788774 45666999999998764
No 308
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=46.31 E-value=1.2e+02 Score=27.52 Aligned_cols=54 Identities=13% Similarity=0.190 Sum_probs=39.3
Q ss_pred CCeEEEeeCC---ChHHHHHHHH-HHHcCCeEEEEecCCC--CHHHHHHHHHcCCEEEEeC
Q 024040 68 GKTVLIELTS---GNTGIGLAFI-AASRGYKLIIIMPSTY--SIERRIILRALGAEVYLAD 122 (273)
Q Consensus 68 g~~~vv~~ss---GN~g~a~A~~-a~~~g~~~~i~~p~~~--~~~~~~~~~~~Ga~v~~~~ 122 (273)
|.+ |+-... +|.+.+++.. ++.+|++++++.|+.. +..-++.++..|+++..+.
T Consensus 159 g~k-ia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~ 218 (338)
T PRK08192 159 GMH-IAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKITITD 218 (338)
T ss_pred CCE-EEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEEEEc
Confidence 344 555555 6889999976 6677999999999864 4455666777888887765
No 309
>cd08251 polyketide_synthase polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a
Probab=46.19 E-value=1.8e+02 Score=24.56 Aligned_cols=55 Identities=22% Similarity=0.354 Sum_probs=39.8
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 024040 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEV 118 (273)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v 118 (273)
+.+.+.++.+-+|...+|..|.+++..++.+|++.+.+.+. ..+.+.++.+|++-
T Consensus 114 ~~~~~~~g~~vli~~~~~~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~ 168 (303)
T cd08251 114 ARAGLAKGEHILIQTATGGTGLMAVQLARLKGAEIYATASS---DDKLEYLKQLGVPH 168 (303)
T ss_pred HhcCCCCCCEEEEecCCcHHHHHHHHHHHHcCCEEEEEcCC---HHHHHHHHHcCCCE
Confidence 45667777775555667889999999999999986655433 45677777888753
No 310
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=46.00 E-value=1.7e+02 Score=24.22 Aligned_cols=52 Identities=33% Similarity=0.498 Sum_probs=34.2
Q ss_pred CCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 024040 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEV 118 (273)
Q Consensus 63 g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v 118 (273)
..+.++.+.+|...++ .|.+++..++..|.+.+++.+. +.+.+.++.+|++.
T Consensus 130 ~~~~~~~~vli~g~~~-~G~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~ 181 (271)
T cd05188 130 GVLKPGDTVLVLGAGG-VGLLAAQLAKAAGARVIVTDRS---DEKLELAKELGADH 181 (271)
T ss_pred cCCCCCCEEEEECCCH-HHHHHHHHHHHcCCeEEEEcCC---HHHHHHHHHhCCce
Confidence 3345666645555555 9999999999999776665443 35566667677643
No 311
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=45.91 E-value=1.1e+02 Score=22.35 Aligned_cols=92 Identities=23% Similarity=0.160 Sum_probs=49.6
Q ss_pred HHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC--CCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhh
Q 024040 82 IGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP--AVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIH 159 (273)
Q Consensus 82 ~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g 159 (273)
..+|.+.++.|.++.++=.......-.+.++.+..+++.+.. ..++....+.++...+..++...+- .|
T Consensus 18 ~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~---------GG 88 (121)
T PF02310_consen 18 LYLAAYLRKAGHEVDILDANVPPEELVEALRAERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVV---------GG 88 (121)
T ss_dssp HHHHHHHHHTTBEEEEEESSB-HHHHHHHHHHTTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEE---------EE
T ss_pred HHHHHHHHHCCCeEEEECCCCCHHHHHHHHhcCCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEE---------EC
Confidence 455666777899988763332234556778888888887753 2234445555555433333322221 12
Q ss_pred -hhchHHH-HHHhhCCCcCEEEEecC
Q 024040 160 -YETTGPE-IWNDSGGKVDAFIAGIG 183 (273)
Q Consensus 160 -~~t~~~E-i~~q~~~~~d~iv~p~G 183 (273)
+.+..+| +++.. ...|+++..=|
T Consensus 89 ~~~t~~~~~~l~~~-~~~D~vv~Geg 113 (121)
T PF02310_consen 89 PHATADPEEILREY-PGIDYVVRGEG 113 (121)
T ss_dssp SSSGHHHHHHHHHH-HTSEEEEEETT
T ss_pred CchhcChHHHhccC-cCcceecCCCh
Confidence 2244444 34432 24688877654
No 312
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=45.83 E-value=2.4e+02 Score=25.72 Aligned_cols=81 Identities=12% Similarity=0.040 Sum_probs=44.2
Q ss_pred CCCCCCchhhHHHHHHHHHHHHcCC--CCCCCeEEEeeCCChHHHHHHHHHHH-cCCeEEEEecCCCCHHHHHHHHHcCC
Q 024040 40 MMQPCSSVKDRIAYSMIKDAEDKGL--ITPGKTVLIELTSGNTGIGLAFIAAS-RGYKLIIIMPSTYSIERRIILRALGA 116 (273)
Q Consensus 40 ~~~ptGS~K~R~a~~~~~~a~~~g~--~~~g~~~vv~~ssGN~g~a~A~~a~~-~g~~~~i~~p~~~~~~~~~~~~~~Ga 116 (273)
+..+.|....|-+..... ...+. +.++.-.++..+++..|+.++..+-. ..---.|++|.-+-..-...++.+|+
T Consensus 65 Y~~~~G~~~lR~aia~~~--~~~~~~~~~~~~i~v~iT~Ga~~al~~~~~~l~~~~pGd~Vlv~~P~y~~~~~~~~~~g~ 142 (396)
T PRK09257 65 YLPIEGLAAYRQAVQELL--FGADSPALAAGRVATVQTPGGTGALRVGADFLKRAFPDAKVWVSDPTWPNHRAIFEAAGL 142 (396)
T ss_pred cCCCCCCHHHHHHHHHHh--cCCCCcccccCeEEEEecCCccHHHHHHHHHHHHhCCCCeEEECCCCcccHHHHHHHcCC
Confidence 334568777775544332 22221 23321113667777888877753221 11112455554333445667788999
Q ss_pred EEEEeC
Q 024040 117 EVYLAD 122 (273)
Q Consensus 117 ~v~~~~ 122 (273)
+++.++
T Consensus 143 ~~v~v~ 148 (396)
T PRK09257 143 EVKTYP 148 (396)
T ss_pred cEEEEe
Confidence 999886
No 313
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=45.83 E-value=1.7e+02 Score=26.36 Aligned_cols=71 Identities=18% Similarity=0.125 Sum_probs=49.5
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEe--cCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCC
Q 024040 72 LIELTSGNTGIGLAFIAASRGYKLIIIM--PSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTP 142 (273)
Q Consensus 72 vv~~ssGN~g~a~A~~a~~~g~~~~i~~--p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~ 142 (273)
|++..=|-.--++-.-=..++=+-++++ |..+++.-..+++.+|..|.+.++...++.+.+.+..+.++.+
T Consensus 55 Vlttpwg~ynes~~~eI~~lnpd~VLIIGGp~AVs~~yE~~Lks~GitV~RigG~nR~ETa~~v~~~~~~~yp 127 (337)
T COG2247 55 VLTTPWGIYNESVLDEIIELNPDLVLIIGGPIAVSPNYENALKSLGITVKRIGGANRYETAEKVAKFFREDYP 127 (337)
T ss_pred eEecCcccccHHHHHHHHhhCCceEEEECCCCcCChhHHHHHHhCCcEEEEecCcchHHHHHHHHHHHHhhch
Confidence 5533324444555555555666666666 4567788888999999999999988778888888877765543
No 314
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=45.82 E-value=1.8e+02 Score=24.23 Aligned_cols=55 Identities=18% Similarity=0.204 Sum_probs=37.0
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCH-HHHHHHHHcCCEEEEeCC
Q 024040 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSI-ERRIILRALGAEVYLADP 123 (273)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~-~~~~~~~~~Ga~v~~~~~ 123 (273)
.+.+|+..+|..|.++|..-...|.+++++....... .....++..+.++..+..
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 60 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAM 60 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEc
Confidence 3457888889999999999888899887776542221 223445556777655543
No 315
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=45.74 E-value=1.7e+02 Score=25.13 Aligned_cols=119 Identities=16% Similarity=0.145 Sum_probs=61.0
Q ss_pred HHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCh-h--HHHHHHHHHHHhCCCeEeeCCC----CCCcc
Q 024040 83 GLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGF-E--GFVKKGEEILNRTPNGYILGQF----ENPAN 155 (273)
Q Consensus 83 a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~-~--~~~~~a~~~~~~~~~~~~~~~~----~~~~~ 155 (273)
+++.+-++.|-++.++ .-++--.+++.+ +|.+=..|-.--+. + ...+.|.---+..++.++++-. .|...
T Consensus 22 nig~aLA~~GkKv~li-D~DiGLRNLDli--mGlE~RiVYd~vdVi~g~~~l~QALIkDKr~~nL~lLPAsQtrdKdalt 98 (272)
T COG2894 22 NIGTALAQLGKKVVLI-DFDIGLRNLDLI--MGLENRIVYDLVDVIEGEATLNQALIKDKRLENLFLLPASQTRDKDALT 98 (272)
T ss_pred HHHHHHHHcCCeEEEE-ecCcCchhhhhh--hcccceeeeeehhhhcCccchhhHhhccccCCceEecccccccCcccCC
Confidence 3444445678887664 444444556655 67765544210000 0 1122221111222344443222 12333
Q ss_pred hHhhhhchHHHHHHhhCCCcCEEEEecCCCccHHHHHHHHHhh--CCCcEEEEEecCCCc
Q 024040 156 PEIHYETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEK--NPNIKVYGIEPSESA 213 (273)
Q Consensus 156 ~~~g~~t~~~Ei~~q~~~~~d~iv~p~G~Gg~~~Gi~~~~k~~--~~~~~vigVe~~~~~ 213 (273)
. ++...+..|+.+ ..+|||+|=+ -+||=+||+.. .-+--++.+.|+-|+
T Consensus 99 ~-E~v~~vv~eL~~---~~fDyIi~Ds-----PAGIE~G~~~A~~~Ad~AiVVtnPEvSs 149 (272)
T COG2894 99 P-EGVKKVVNELKA---MDFDYIIIDS-----PAGIEQGFKNAVYFADEAIVVTNPEVSS 149 (272)
T ss_pred H-HHHHHHHHHHHh---cCCCEEEecC-----cchHHHHHHhhhhccceEEEEcCCCccc
Confidence 4 466666555544 3699999854 56888888753 234567777777665
No 316
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=45.74 E-value=48 Score=26.27 Aligned_cols=46 Identities=24% Similarity=0.241 Sum_probs=35.8
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeC
Q 024040 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLAD 122 (273)
Q Consensus 72 vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~ 122 (273)
+|...+|+.|..++....+.|.+++++++... +.+. ..+.+++..+
T Consensus 2 ~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~---~~~~--~~~~~~~~~d 47 (183)
T PF13460_consen 2 LVFGATGFVGRALAKQLLRRGHEVTALVRSPS---KAED--SPGVEIIQGD 47 (183)
T ss_dssp EEETTTSHHHHHHHHHHHHTTSEEEEEESSGG---GHHH--CTTEEEEESC
T ss_pred EEECCCChHHHHHHHHHHHCCCEEEEEecCch---hccc--ccccccceee
Confidence 56778899999999999999999999998743 3333 5666666655
No 317
>PRK06949 short chain dehydrogenase; Provisional
Probab=45.69 E-value=1.5e+02 Score=24.78 Aligned_cols=33 Identities=24% Similarity=0.312 Sum_probs=26.5
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecC
Q 024040 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPS 101 (273)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~ 101 (273)
.+.+|+..+|.-|.++|....+.|.+++++...
T Consensus 10 k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~ 42 (258)
T PRK06949 10 KVALVTGASSGLGARFAQVLAQAGAKVVLASRR 42 (258)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 455788888999999999998899987766543
No 318
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=45.67 E-value=2.3e+02 Score=25.61 Aligned_cols=108 Identities=14% Similarity=0.102 Sum_probs=50.8
Q ss_pred CCCchhhHHHHHHHHHHHHcCC-CCCCCeEEEeeCCChHHHHHHHHHHH-cCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 024040 43 PCSSVKDRIAYSMIKDAEDKGL-ITPGKTVLIELTSGNTGIGLAFIAAS-RGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (273)
Q Consensus 43 ptGS~K~R~a~~~~~~a~~~g~-~~~g~~~vv~~ssGN~g~a~A~~a~~-~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 120 (273)
+.|....|-+..-... ...|. +.|... |+..+++..++.++..+-. -| +. |+++.-+-..-...++..|++++.
T Consensus 67 ~~G~~~lr~aia~~~~-~~~g~~~~~~~~-I~it~Gs~~al~~~~~~l~~~g-d~-Vlv~~P~y~~~~~~~~~~g~~~~~ 142 (388)
T PRK07366 67 FHGTLDFREAAAQWYE-QRFGLAVDPETE-VLPLIGSQEGTAHLPLAVLNPG-DF-ALLLDPGYPSHAGGVYLAGGQIYP 142 (388)
T ss_pred CCCCHHHHHHHHHHHH-HhhCCcCCCcCe-EEECCCcHHHHHHHHHHhCCCC-CE-EEEcCCCCcchHHHHHhcCCEEEE
Confidence 3566666644332221 12232 333322 7766777777766654321 23 22 333332222335566779999998
Q ss_pred eCCC--CChhHHHHHHHHHHHhCCCeEeeCCCCCCc
Q 024040 121 ADPA--VGFEGFVKKGEEILNRTPNGYILGQFENPA 154 (273)
Q Consensus 121 ~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 154 (273)
++-+ ..+..-.+...+........+|+....||.
T Consensus 143 v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~p~NPT 178 (388)
T PRK07366 143 MPLRAENDFLPVFADIPTEVLAQARLMVLSYPHNPT 178 (388)
T ss_pred EECCCccCCCCCHHHHHHhhcccceEEEEeCCCCCC
Confidence 8642 122211112222222223667776555554
No 319
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=45.65 E-value=1.6e+02 Score=25.91 Aligned_cols=52 Identities=25% Similarity=0.233 Sum_probs=36.0
Q ss_pred CCCCCCeEEEeeCCChHHHHHHHHHHHcC-CeEEEEecCCCCHHHHHHHHHcCCEEE
Q 024040 64 LITPGKTVLIELTSGNTGIGLAFIAASRG-YKLIIIMPSTYSIERRIILRALGAEVY 119 (273)
Q Consensus 64 ~~~~g~~~vv~~ssGN~g~a~A~~a~~~g-~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 119 (273)
.+.++.+.+|.. +|..|.+++..|+.+| .+++++.. ++.+.+.++.+|++-+
T Consensus 164 ~~~~~~~vlI~g-~~~vg~~~~~~a~~~g~~~v~~~~~---~~~~~~~~~~~g~~~~ 216 (340)
T cd05284 164 YLDPGSTVVVIG-VGGLGHIAVQILRALTPATVIAVDR---SEEALKLAERLGADHV 216 (340)
T ss_pred cCCCCCEEEEEc-CcHHHHHHHHHHHHhCCCcEEEEeC---CHHHHHHHHHhCCcEE
Confidence 345566645554 6669999999999999 77665433 3467777888997543
No 320
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=45.52 E-value=2.1e+02 Score=25.08 Aligned_cols=53 Identities=34% Similarity=0.547 Sum_probs=38.0
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 024040 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAE 117 (273)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~ 117 (273)
+...+.++.+.+|. .+|..|.+++..|+.+|+++++... +..+...++.+|++
T Consensus 153 ~~~~l~~g~~vLI~-g~g~vG~~a~~lA~~~g~~v~~~~~---s~~~~~~~~~~g~~ 205 (337)
T cd08261 153 RRAGVTAGDTVLVV-GAGPIGLGVIQVAKARGARVIVVDI---DDERLEFARELGAD 205 (337)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCeEEEECC---CHHHHHHHHHhCCC
Confidence 34556777774555 5677899999999999999766533 35677777888864
No 321
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=45.48 E-value=1.7e+02 Score=26.09 Aligned_cols=52 Identities=13% Similarity=0.062 Sum_probs=31.8
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCC
Q 024040 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPA 124 (273)
Q Consensus 72 vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~ 124 (273)
|+..++++.++.++..+- .+-.-.|++|.-+-..-....+.+|++++.++-+
T Consensus 84 I~~t~G~~~~i~~~~~~~-~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~ 135 (356)
T PRK04870 84 VLLGNGSDELIQLLALAC-AKPGATVLAPEPGFVMYRMSAKLAGLEFVGVPLT 135 (356)
T ss_pred EEEcCCHHHHHHHHHHHh-cCCCCEEEECCCCHHHHHHHHHHcCCEEEEecCC
Confidence 666666667766555432 2222345555444445566778899999998743
No 322
>PRK13243 glyoxylate reductase; Reviewed
Probab=45.45 E-value=2.3e+02 Score=25.49 Aligned_cols=96 Identities=21% Similarity=0.187 Sum_probs=60.3
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCC
Q 024040 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQF 150 (273)
Q Consensus 71 ~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 150 (273)
+|....-|+-|.++|..++.+|++++++-+.. ... ....+|+.. . +++ ++.++. +...++-.
T Consensus 152 tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~-~~~---~~~~~~~~~--~----~l~-------ell~~a-DiV~l~lP 213 (333)
T PRK13243 152 TIGIIGFGRIGQAVARRAKGFGMRILYYSRTR-KPE---AEKELGAEY--R----PLE-------ELLRES-DFVSLHVP 213 (333)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCEEEEECCCC-Chh---hHHHcCCEe--c----CHH-------HHHhhC-CEEEEeCC
Confidence 47778889999999999999999987765532 221 123345421 1 122 223333 44444332
Q ss_pred CCCcchHhhhhchHHHHHHhhCCCcCEEEEecCCCccHHH
Q 024040 151 ENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGGTVTG 190 (273)
Q Consensus 151 ~~~~~~~~g~~t~~~Ei~~q~~~~~d~iv~p~G~Gg~~~G 190 (273)
... .-...+..|.++.+ +++.+++-++.|+.+--
T Consensus 214 ---~t~-~T~~~i~~~~~~~m--k~ga~lIN~aRg~~vd~ 247 (333)
T PRK13243 214 ---LTK-ETYHMINEERLKLM--KPTAILVNTARGKVVDT 247 (333)
T ss_pred ---CCh-HHhhccCHHHHhcC--CCCeEEEECcCchhcCH
Confidence 222 13345667888887 57899999999998753
No 323
>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase. This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).
Probab=45.33 E-value=2.9e+02 Score=26.68 Aligned_cols=82 Identities=15% Similarity=0.063 Sum_probs=41.2
Q ss_pred CCCCchhhHHHHHHHHHHHHc-CCCCCCC-eEEEeeCCChHHHHHHHHHH----Hc--CCeEEEEecCCCCHHHHHHHHH
Q 024040 42 QPCSSVKDRIAYSMIKDAEDK-GLITPGK-TVLIELTSGNTGIGLAFIAA----SR--GYKLIIIMPSTYSIERRIILRA 113 (273)
Q Consensus 42 ~ptGS~K~R~a~~~~~~a~~~-g~~~~g~-~~vv~~ssGN~g~a~A~~a~----~~--g~~~~i~~p~~~~~~~~~~~~~ 113 (273)
.|.|....|-+...-....+. +...+.. ..|+..+++..|+.++..+- .+ |=++.+..|--..-...-.+..
T Consensus 126 ~p~g~~~~~e~iv~~y~~~~~~~~~~~~~~~~V~it~Gat~al~~~~~~l~~~~ll~pGD~Vlv~~P~y~~y~~~~~l~~ 205 (521)
T TIGR03801 126 VPDRMLPHSEKIVHQYLIQEMCGNKPPPGEFDLFAVEGGTAAMCYIFDSLKANELLKKGDKIALMTPIFTPYLEIPELPR 205 (521)
T ss_pred CCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHHHHhHhhcCCCCCEEEEeCCCcHHHHHHHHHhc
Confidence 467777766433321111221 2222222 14888888888888776541 22 3333333343322222333455
Q ss_pred cCCEEEEeCC
Q 024040 114 LGAEVYLADP 123 (273)
Q Consensus 114 ~Ga~v~~~~~ 123 (273)
+|++++.++.
T Consensus 206 ~g~~vv~i~~ 215 (521)
T TIGR03801 206 YDFEVVRIKA 215 (521)
T ss_pred CCcEEEEeec
Confidence 6888887754
No 324
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=45.30 E-value=1.6e+02 Score=24.42 Aligned_cols=54 Identities=15% Similarity=0.108 Sum_probs=36.2
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeCC
Q 024040 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS--IERRIILRALGAEVYLADP 123 (273)
Q Consensus 70 ~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~--~~~~~~~~~~Ga~v~~~~~ 123 (273)
+.+|+.++|--|.+++......|.++++....... ......++..|.++..+..
T Consensus 8 ~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (252)
T PRK06077 8 VVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKENGGEGIGVLA 63 (252)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHcCCeeEEEEe
Confidence 45777788889999998888889987765533221 2234556667777665543
No 325
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=45.26 E-value=1.8e+02 Score=24.21 Aligned_cols=54 Identities=28% Similarity=0.328 Sum_probs=36.2
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeCC
Q 024040 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS--IERRIILRALGAEVYLADP 123 (273)
Q Consensus 70 ~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~--~~~~~~~~~~Ga~v~~~~~ 123 (273)
..+|+..+|.-|.++|..-...|.+++++.....+ ....+.++..+.++..+..
T Consensus 4 ~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (256)
T PRK12745 4 VALVTGGRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRALGVEVIFFPA 59 (256)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEecCchhHHHHHHHHHHhcCCceEEEEe
Confidence 34788888999999999888889988776643221 2234445556776665543
No 326
>PRK08068 transaminase; Reviewed
Probab=45.21 E-value=2.4e+02 Score=25.59 Aligned_cols=77 Identities=12% Similarity=-0.037 Sum_probs=40.9
Q ss_pred CCchhhHHHHHHHHHHHHcCC-CCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeC
Q 024040 44 CSSVKDRIAYSMIKDAEDKGL-ITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLAD 122 (273)
Q Consensus 44 tGS~K~R~a~~~~~~a~~~g~-~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~ 122 (273)
.|.-..|.+....... ..|. +.++.. |+..+++..+..++..+ ..+-.-.|++|.-+-..-...++.+|++++.++
T Consensus 70 ~g~~~lr~aia~~~~~-~~g~~~~~~~~-i~it~G~~~~l~~~~~~-~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~ 146 (389)
T PRK08068 70 RGYPFLKEAAADFYKR-EYGVTLDPETE-VAILFGGKAGLVELPQC-LMNPGDTILVPDPGYPDYLSGVALARAQFETMP 146 (389)
T ss_pred CCCHHHHHHHHHHHHH-HhCCCCCCCcc-EEEcCCcHHHHHHHHHH-hCCCCCEEEEcCCCCcchHHHHHhcCCEEEEee
Confidence 5665666444433221 1232 333322 66667777776665332 233333455654333334555678999998886
Q ss_pred C
Q 024040 123 P 123 (273)
Q Consensus 123 ~ 123 (273)
-
T Consensus 147 ~ 147 (389)
T PRK08068 147 L 147 (389)
T ss_pred c
Confidence 4
No 327
>PRK08912 hypothetical protein; Provisional
Probab=45.17 E-value=2.4e+02 Score=25.55 Aligned_cols=78 Identities=13% Similarity=0.058 Sum_probs=42.7
Q ss_pred CCCchhhHHHHHHHHHHHHcCC-CCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEe
Q 024040 43 PCSSVKDRIAYSMIKDAEDKGL-ITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLA 121 (273)
Q Consensus 43 ptGS~K~R~a~~~~~~a~~~g~-~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~ 121 (273)
+.|....|.+...... ...|. ..|.. .|+..+++..+..++..+-. +-.-.|+++.-.-..-...++.+|++++.+
T Consensus 62 ~~G~~~lr~~ia~~~~-~~~g~~~~~~~-~i~~t~G~~~al~~~~~~~~-~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~ 138 (387)
T PRK08912 62 MMGLPELRQAVAAHYA-RFQGLDLDPET-EVMVTSGATEALAAALLALV-EPGDEVVLFQPLYDAYLPLIRRAGGVPRLV 138 (387)
T ss_pred CCCcHHHHHHHHHHHH-HHhCCCCCCcc-cEEEeCCcHHHHHHHHHHhc-CCCCEEEEeCCCchhhHHHHHHcCCEEEEE
Confidence 4566666654443222 11232 23321 37777788888766655442 222345555433334455678899999877
Q ss_pred CC
Q 024040 122 DP 123 (273)
Q Consensus 122 ~~ 123 (273)
+-
T Consensus 139 ~~ 140 (387)
T PRK08912 139 RL 140 (387)
T ss_pred ec
Confidence 64
No 328
>PRK13984 putative oxidoreductase; Provisional
Probab=45.15 E-value=94 Score=30.38 Aligned_cols=50 Identities=22% Similarity=0.378 Sum_probs=37.9
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecCCC--------------C----HHHHHHHHHcCCEEEE
Q 024040 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTY--------------S----IERRIILRALGAEVYL 120 (273)
Q Consensus 71 ~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~--------------~----~~~~~~~~~~Ga~v~~ 120 (273)
.|+...+|-.|.+.|...++.|++++|+=.+.. + ....+.++.+|.+++.
T Consensus 285 ~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~ 352 (604)
T PRK13984 285 KVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHL 352 (604)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEEC
Confidence 377778999999999999999999998843221 1 2345678889988754
No 329
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=45.07 E-value=1.6e+02 Score=25.89 Aligned_cols=59 Identities=25% Similarity=0.259 Sum_probs=38.8
Q ss_pred CCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCC-CHHHHHHHHHcCCEEEEe
Q 024040 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTY-SIERRIILRALGAEVYLA 121 (273)
Q Consensus 63 g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~-~~~~~~~~~~~Ga~v~~~ 121 (273)
..+.++.+-+|...+|..|.+++..|+.+|.++++...... -..+.+.++.+|++-+..
T Consensus 142 ~~~~~g~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~ 201 (341)
T cd08290 142 VKLQPGDWVIQNGANSAVGQAVIQLAKLLGIKTINVVRDRPDLEELKERLKALGADHVLT 201 (341)
T ss_pred cccCCCCEEEEccchhHHHHHHHHHHHHcCCeEEEEEcCCCcchhHHHHHHhcCCCEEEe
Confidence 34566666344445688999999999999998777665321 124566667788865443
No 330
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=44.97 E-value=2e+02 Score=24.57 Aligned_cols=54 Identities=28% Similarity=0.324 Sum_probs=37.8
Q ss_pred CCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 024040 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (273)
Q Consensus 63 g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 119 (273)
+.+.++.+.+|...+|..|.+++..++..|.+.++..+. ..+.+.++.+|++-+
T Consensus 140 ~~~~~g~~vlI~g~~~~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~~ 193 (325)
T cd08253 140 AGAKAGETVLVHGGSGAVGHAAVQLARWAGARVIATASS---AEGAELVRQAGADAV 193 (325)
T ss_pred hCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHHcCCCEE
Confidence 445666675666667889999999999999886655442 356666677787543
No 331
>PRK06128 oxidoreductase; Provisional
Probab=44.94 E-value=2.1e+02 Score=24.86 Aligned_cols=55 Identities=16% Similarity=0.137 Sum_probs=38.0
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCC-C--CHHHHHHHHHcCCEEEEeCC
Q 024040 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPST-Y--SIERRIILRALGAEVYLADP 123 (273)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~-~--~~~~~~~~~~~Ga~v~~~~~ 123 (273)
.+.+|+..+|--|.++|..-.+.|.++++..... . .......++..|.+++.+..
T Consensus 56 k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (300)
T PRK06128 56 RKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPG 113 (300)
T ss_pred CEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEec
Confidence 3558888888899999999888999887654321 1 12234556667887766543
No 332
>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]
Probab=44.89 E-value=3e+02 Score=26.59 Aligned_cols=91 Identities=19% Similarity=0.135 Sum_probs=63.9
Q ss_pred eEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHH
Q 024040 33 RIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILR 112 (273)
Q Consensus 33 ~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~ 112 (273)
.+-++.|....|+|-=.-.+..+..-.+..| |++|++.-|.++..-+=.-..++|++.|+-.+-+=|.--+.+....|+
T Consensus 68 a~Vf~~eg~R~Tf~~~~~ev~slAaGll~lG-L~kGDrVgvwgpN~~~w~l~~lA~A~AG~v~v~~NP~Yq~~elr~~L~ 146 (596)
T KOG1177|consen 68 AAVFDHEGIRLTFSEFVSEVESLAAGLLSLG-LKKGDRVGVWGPNSYEWVLCQLACARAGLVLVNLNPAYQSEELRYVLK 146 (596)
T ss_pred EEEEeeccchhhHHHHHHHHHHHHhhHHhhc-CCCCCEEEEecCChHHHHHHHHHHHHhceEEeccCcccccHHHHHHHh
Confidence 5777888777666533334455555555566 677776444445444556778889999987777767766778888899
Q ss_pred HcCCEEEEeCCC
Q 024040 113 ALGAEVYLADPA 124 (273)
Q Consensus 113 ~~Ga~v~~~~~~ 124 (273)
..|.++.+.+..
T Consensus 147 k~~~k~l~~p~~ 158 (596)
T KOG1177|consen 147 KVGCKALFAPPQ 158 (596)
T ss_pred hcCeEEEEccch
Confidence 999999998863
No 333
>PRK09134 short chain dehydrogenase; Provisional
Probab=44.76 E-value=1.9e+02 Score=24.28 Aligned_cols=54 Identities=17% Similarity=0.244 Sum_probs=36.3
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCH--HHHHHHHHcCCEEEEeC
Q 024040 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSI--ERRIILRALGAEVYLAD 122 (273)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~--~~~~~~~~~Ga~v~~~~ 122 (273)
.+.+|+..+|.-|.++|....+.|.+++++....... .-...++..|.++..+.
T Consensus 10 k~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (258)
T PRK09134 10 RAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRDEAEALAAEIRALGRRAVALQ 65 (258)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 3558888889999999999999999887765432211 11233444577776554
No 334
>PRK12744 short chain dehydrogenase; Provisional
Probab=44.66 E-value=1.8e+02 Score=24.35 Aligned_cols=54 Identities=28% Similarity=0.182 Sum_probs=35.1
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCC-CCH----HHHHHHHHcCCEEEEeCC
Q 024040 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPST-YSI----ERRIILRALGAEVYLADP 123 (273)
Q Consensus 70 ~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~-~~~----~~~~~~~~~Ga~v~~~~~ 123 (273)
..+|+..+|.-|.++|..-...|.+++++.... ... ...+.++..|.++..+..
T Consensus 10 ~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 68 (257)
T PRK12744 10 VVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQA 68 (257)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEec
Confidence 457777888899999988888899966665321 111 223445556777765543
No 335
>PRK07035 short chain dehydrogenase; Provisional
Probab=44.52 E-value=1.9e+02 Score=24.14 Aligned_cols=53 Identities=17% Similarity=0.114 Sum_probs=34.7
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeC
Q 024040 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLAD 122 (273)
Q Consensus 70 ~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~ 122 (273)
+.+|+..+|.-|.+++....+.|.+++++-..... ....+.+...|.++..+.
T Consensus 10 ~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~ 63 (252)
T PRK07035 10 IALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGGKAEALA 63 (252)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 45888888889999999988899987776543211 122334445566665443
No 336
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=44.44 E-value=2e+02 Score=24.57 Aligned_cols=51 Identities=31% Similarity=0.341 Sum_probs=37.4
Q ss_pred CCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 024040 67 PGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (273)
Q Consensus 67 ~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 120 (273)
++.+-+|...+|..|.+++..|+.+|.+.+...+ +..+...++.+|+....
T Consensus 132 ~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~~~ 182 (305)
T cd08270 132 LGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVG---SPARAEGLRELGAAEVV 182 (305)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCcEEE
Confidence 4666555566689999999999999998555433 45778888889986433
No 337
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=44.37 E-value=1.5e+02 Score=26.16 Aligned_cols=50 Identities=32% Similarity=0.359 Sum_probs=36.1
Q ss_pred CCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 024040 66 TPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (273)
Q Consensus 66 ~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 119 (273)
.++.+-+|...+|..|.+++..|+.+|.+.+... +..+.+.++.+|++-+
T Consensus 153 ~~~~~vlI~ga~g~vg~~~~~~a~~~G~~v~~~~----~~~~~~~~~~~g~~~v 202 (339)
T cd08249 153 SKGKPVLIWGGSSSVGTLAIQLAKLAGYKVITTA----SPKNFDLVKSLGADAV 202 (339)
T ss_pred CCCCEEEEEcChhHHHHHHHHHHHHcCCeEEEEE----CcccHHHHHhcCCCEE
Confidence 4666645555568899999999999999866554 2267777788998433
No 338
>PRK07814 short chain dehydrogenase; Provisional
Probab=44.37 E-value=1.8e+02 Score=24.52 Aligned_cols=54 Identities=17% Similarity=0.196 Sum_probs=34.1
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeC
Q 024040 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLAD 122 (273)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~ 122 (273)
.+.+|+.++|--|.++|......|.+++++...... ......++..|.++..+.
T Consensus 11 ~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~ 65 (263)
T PRK07814 11 QVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGRRAHVVA 65 (263)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 455888888889999998888889988776543111 112233444566665443
No 339
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=44.22 E-value=2e+02 Score=24.42 Aligned_cols=56 Identities=30% Similarity=0.402 Sum_probs=38.6
Q ss_pred cCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 024040 62 KGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (273)
Q Consensus 62 ~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 120 (273)
.+.+.++.+.+|...+|..|.+++..++.+|.+.+++.. +..+.+.++.+|++-+.
T Consensus 131 ~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~~~ 186 (320)
T cd05286 131 TYPVKPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVS---SEEKAELARAAGADHVI 186 (320)
T ss_pred hcCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcC---CHHHHHHHHHCCCCEEE
Confidence 345666666455555788999999999999988655532 44667777778875443
No 340
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=44.13 E-value=1.5e+02 Score=27.77 Aligned_cols=49 Identities=20% Similarity=0.186 Sum_probs=34.2
Q ss_pred CCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 024040 66 TPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEV 118 (273)
Q Consensus 66 ~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v 118 (273)
.+|.+ ++....|+-|+.+|..++.+|.+++++-. ++.+.......|.++
T Consensus 210 l~Gk~-VlViG~G~IG~~vA~~lr~~Ga~ViV~d~---dp~ra~~A~~~G~~v 258 (425)
T PRK05476 210 IAGKV-VVVAGYGDVGKGCAQRLRGLGARVIVTEV---DPICALQAAMDGFRV 258 (425)
T ss_pred CCCCE-EEEECCCHHHHHHHHHHHhCCCEEEEEcC---CchhhHHHHhcCCEe
Confidence 34555 88889999999999999999997555422 234444444457764
No 341
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=44.04 E-value=1.6e+02 Score=29.20 Aligned_cols=55 Identities=25% Similarity=0.273 Sum_probs=38.0
Q ss_pred CCCCCeEEEeeCCChHHHHHHHHHHHcCCe-EEEEecCC---C--CHHHHHHHHHcCCEEEE
Q 024040 65 ITPGKTVLIELTSGNTGIGLAFIAASRGYK-LIIIMPST---Y--SIERRIILRALGAEVYL 120 (273)
Q Consensus 65 ~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~-~~i~~p~~---~--~~~~~~~~~~~Ga~v~~ 120 (273)
...+.+ ||...+||.|.-+|..+.++|.+ ++++.+.. . ....+......|.+++.
T Consensus 320 ~~~gk~-VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mpa~~~ei~~a~~eGV~i~~ 380 (652)
T PRK12814 320 LHPGKK-VVVIGGGNTAIDAARTALRLGAESVTILYRRTREEMPANRAEIEEALAEGVSLRE 380 (652)
T ss_pred ccCCCe-EEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHcCCcEEe
Confidence 334445 88899999999999999999974 77776532 1 22334444557887765
No 342
>PRK07677 short chain dehydrogenase; Provisional
Probab=43.91 E-value=1.9e+02 Score=24.13 Aligned_cols=53 Identities=19% Similarity=0.204 Sum_probs=33.6
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeC
Q 024040 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLAD 122 (273)
Q Consensus 70 ~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~ 122 (273)
+.+|+..+|.-|.++|......|.+++++...... ......++..+.+++.+.
T Consensus 3 ~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~ 56 (252)
T PRK07677 3 VVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQ 56 (252)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 44788888889999999988899977665433111 112223444566665554
No 343
>PRK07324 transaminase; Validated
Probab=43.48 E-value=2e+02 Score=26.09 Aligned_cols=51 Identities=18% Similarity=-0.008 Sum_probs=30.3
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 024040 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (273)
Q Consensus 72 vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 123 (273)
|+..+++..+..++..+- ++-.-.|+++.-.-..-....+.+|++++.++-
T Consensus 83 vi~t~G~~~al~~~~~~l-~~~gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~~ 133 (373)
T PRK07324 83 ILQTNGATGANFLVLYAL-VEPGDHVISVYPTYQQLYDIPESLGAEVDYWQL 133 (373)
T ss_pred EEEcCChHHHHHHHHHHh-CCCCCEEEEcCCCchhHHHHHHHcCCEEEEEec
Confidence 676677777766665543 232223444432223345667889999998864
No 344
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=43.46 E-value=2.6e+02 Score=25.45 Aligned_cols=115 Identities=19% Similarity=0.206 Sum_probs=74.8
Q ss_pred cCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhC
Q 024040 62 KGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRT 141 (273)
Q Consensus 62 ~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~ 141 (273)
-..++||.+ ++...-|--|+|++.-|+..|-.=+|=+. ..+.|.+.-+.+||+=. +.
T Consensus 187 ~Akv~~Gst-vAVfGLG~VGLav~~Gaka~GAsrIIgvD--iN~~Kf~~ak~fGaTe~-iN------------------- 243 (375)
T KOG0022|consen 187 TAKVEPGST-VAVFGLGGVGLAVAMGAKAAGASRIIGVD--INPDKFEKAKEFGATEF-IN------------------- 243 (375)
T ss_pred hcccCCCCE-EEEEecchHHHHHHHhHHhcCcccEEEEe--cCHHHHHHHHhcCccee-cC-------------------
Confidence 334667766 88888899999999999998876665553 45677777777777522 21
Q ss_pred CCeEeeCCCCCCcchHhhhhchHHHHHHhhCCCcCEEEEecCCCccHHHHHHHHHhhCCCcEEEEEecCCCc
Q 024040 142 PNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESA 213 (273)
Q Consensus 142 ~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~iv~p~G~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~ 213 (273)
|-+-. ..+-.-|.|..++.+|+-|=++|+=.++.-.....+.-+-..-++||.+.+..
T Consensus 244 -------p~d~~-------~~i~evi~EmTdgGvDysfEc~G~~~~m~~al~s~h~GwG~sv~iGv~~~~~~ 301 (375)
T KOG0022|consen 244 -------PKDLK-------KPIQEVIIEMTDGGVDYSFECIGNVSTMRAALESCHKGWGKSVVIGVAAAGQE 301 (375)
T ss_pred -------hhhcc-------ccHHHHHHHHhcCCceEEEEecCCHHHHHHHHHHhhcCCCeEEEEEecCCCcc
Confidence 11000 01111233344566888888888777766666666666667788999887764
No 345
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=43.37 E-value=85 Score=30.99 Aligned_cols=50 Identities=22% Similarity=0.294 Sum_probs=42.1
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 024040 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (273)
Q Consensus 71 ~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 123 (273)
+++.+..|..|+.+|..-+..|++++++ +.++.+.+.++.+|.+++.-|.
T Consensus 402 ~vII~G~Gr~G~~va~~L~~~g~~vvvI---D~d~~~v~~~~~~g~~v~~GDa 451 (621)
T PRK03562 402 RVIIAGFGRFGQIVGRLLLSSGVKMTVL---DHDPDHIETLRKFGMKVFYGDA 451 (621)
T ss_pred cEEEEecChHHHHHHHHHHhCCCCEEEE---ECCHHHHHHHHhcCCeEEEEeC
Confidence 4999999999999999999999998776 3356788888889998877764
No 346
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=43.20 E-value=2.3e+02 Score=24.74 Aligned_cols=54 Identities=28% Similarity=0.356 Sum_probs=37.9
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 024040 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAE 117 (273)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~ 117 (273)
+...+.++.+.+|. .+|..|.+++..|+.+|++.++++.. +..+...++.+|+.
T Consensus 153 ~~~~~~~g~~vlI~-g~g~vg~~~~~la~~~G~~~v~~~~~--~~~~~~~~~~~g~~ 206 (334)
T cd08234 153 DLLGIKPGDSVLVF-GAGPIGLLLAQLLKLNGASRVTVAEP--NEEKLELAKKLGAT 206 (334)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHHHhCCe
Confidence 34456677764454 57888999999999999884444432 45677777888886
No 347
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=43.19 E-value=2.5e+02 Score=25.35 Aligned_cols=45 Identities=18% Similarity=0.141 Sum_probs=32.6
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 024040 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEV 118 (273)
Q Consensus 72 vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v 118 (273)
|.....||.|.++|...+..|++++++.+..... ....+..|.++
T Consensus 20 IgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s--~~~A~~~G~~~ 64 (330)
T PRK05479 20 VAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKS--WKKAEADGFEV 64 (330)
T ss_pred EEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhh--HHHHHHCCCee
Confidence 7777889999999999999999988876653222 22334567653
No 348
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=42.93 E-value=1e+02 Score=31.06 Aligned_cols=52 Identities=23% Similarity=0.279 Sum_probs=38.6
Q ss_pred CCeEEEeeCCChHHHHHHHHHHHcCCe-EEEEecCC---C--CHHHHHHHHHcCCEEEE
Q 024040 68 GKTVLIELTSGNTGIGLAFIAASRGYK-LIIIMPST---Y--SIERRIILRALGAEVYL 120 (273)
Q Consensus 68 g~~~vv~~ssGN~g~a~A~~a~~~g~~-~~i~~p~~---~--~~~~~~~~~~~Ga~v~~ 120 (273)
|.+ ||...+||.|+-+|..+.++|.+ ++++.+.. . ....++.++..|.+++.
T Consensus 570 gk~-VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~~~~e~~~~~~~GV~i~~ 627 (752)
T PRK12778 570 GKK-VAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPARLEEVKHAKEEGIEFLT 627 (752)
T ss_pred CCc-EEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHcCCEEEe
Confidence 344 89999999999999999999997 88887542 1 12334456777888764
No 349
>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=42.86 E-value=2.2e+02 Score=24.43 Aligned_cols=56 Identities=29% Similarity=0.436 Sum_probs=39.6
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 024040 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (273)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 120 (273)
+.+.+.++...+|...+|..|.+++..++.+|.++++..+ + .+.+.++.+|++-+.
T Consensus 138 ~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~---~-~~~~~~~~~g~~~~~ 193 (326)
T cd08272 138 DRAAVQAGQTVLIHGGAGGVGHVAVQLAKAAGARVYATAS---S-EKAAFARSLGADPII 193 (326)
T ss_pred HhcCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEec---h-HHHHHHHHcCCCEEE
Confidence 4456667777555555788999999999999998766543 2 556666778875443
No 350
>PRK11609 nicotinamidase/pyrazinamidase; Provisional
Probab=42.85 E-value=1.9e+02 Score=23.84 Aligned_cols=53 Identities=15% Similarity=0.145 Sum_probs=37.5
Q ss_pred CeEEEeeCCChHH-HHHHHHHHHcCCeEEEEecCCCC--------HHHHHHHHHcCCEEEEe
Q 024040 69 KTVLIELTSGNTG-IGLAFIAASRGYKLIIIMPSTYS--------IERRIILRALGAEVYLA 121 (273)
Q Consensus 69 ~~~vv~~ssGN~g-~a~A~~a~~~g~~~~i~~p~~~~--------~~~~~~~~~~Ga~v~~~ 121 (273)
.+-+++.-..|.+ .+.|..|..+|++++|+.+-..+ ..-++.|+..|++|+..
T Consensus 143 ~~lii~G~~T~~CV~~Ta~dA~~~gy~v~v~~Da~a~~~~~~~~~~~al~~~~~~~~~v~t~ 204 (212)
T PRK11609 143 TELIVMGLATDYCVKFTVLDALALGYQVNVITDGCRGVNLQPQDSAHAFMEMSAAGATLYTL 204 (212)
T ss_pred CEEEEEEeccCHHHHHHHHHHHHCCCEEEEEeeccCCCCCCchhHHHHHHHHHHCCCEEEEH
Confidence 4546666667777 57788899999999988764322 22467777889888754
No 351
>PLN02342 ornithine carbamoyltransferase
Probab=42.70 E-value=1.4e+02 Score=27.22 Aligned_cols=59 Identities=17% Similarity=0.293 Sum_probs=38.5
Q ss_pred cCCCCCCCeEEEee-CCChHHHHHHHHHHHcCCeEEEEecCCC--CHHHHHHHHHcCC-EEEEeC
Q 024040 62 KGLITPGKTVLIEL-TSGNTGIGLAFIAASRGYKLIIIMPSTY--SIERRIILRALGA-EVYLAD 122 (273)
Q Consensus 62 ~g~~~~g~~~vv~~-ssGN~g~a~A~~a~~~g~~~~i~~p~~~--~~~~~~~~~~~Ga-~v~~~~ 122 (273)
.|.+. |.+ |+-. -..|.+.+++.+++++|++++++.|+.. +...++..+..|. ++....
T Consensus 189 ~G~l~-glk-va~vGD~~nva~Sli~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~~ 251 (348)
T PLN02342 189 IGRLE-GTK-VVYVGDGNNIVHSWLLLAAVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEITN 251 (348)
T ss_pred hCCcC-CCE-EEEECCCchhHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEEc
Confidence 45432 344 4433 3357889999999999999999999853 3344555566674 665543
No 352
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=42.51 E-value=2.5e+02 Score=25.03 Aligned_cols=79 Identities=11% Similarity=-0.063 Sum_probs=41.9
Q ss_pred CCCCchhhHHHHHHHHHHHHcCC-CCCCCeEEEeeCCChHHHHHHHHHHHcCCe---EEEEecCCCCHHHHHHHHHcCCE
Q 024040 42 QPCSSVKDRIAYSMIKDAEDKGL-ITPGKTVLIELTSGNTGIGLAFIAASRGYK---LIIIMPSTYSIERRIILRALGAE 117 (273)
Q Consensus 42 ~ptGS~K~R~a~~~~~~a~~~g~-~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~---~~i~~p~~~~~~~~~~~~~~Ga~ 117 (273)
.|.|.-..|.+..-... ...|. +.++.. |+..+++..++-++..+- ++-. -.|++|.-.-..-....+.+|++
T Consensus 34 ~~~G~~~lr~aia~~~~-~~~g~~~~~~~~-Iiit~Gs~~ai~~~~~~~-~~~g~~~d~Vl~~~p~y~~~~~~~~~~g~~ 110 (350)
T TIGR03537 34 SALGTKALREAISGWFE-RRFGVKLDPDAQ-VLPSAGSKEAIFHFPLVF-IDPEEDRRRVIFGTPGYPVYERGALFAGGE 110 (350)
T ss_pred CCCCCHHHHHHHHHHHH-HHhCCCCCCCCc-EEEcCChHHHHHHHHHHH-cCCCCCCceEEEcCCCCcchHHHHHhcCCE
Confidence 44676677754443322 12242 233223 776766666655443322 2321 25555543434455566789999
Q ss_pred EEEeCC
Q 024040 118 VYLADP 123 (273)
Q Consensus 118 v~~~~~ 123 (273)
++.++-
T Consensus 111 ~~~v~~ 116 (350)
T TIGR03537 111 PTAVKL 116 (350)
T ss_pred EEEccc
Confidence 998864
No 353
>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional
Probab=42.50 E-value=2.3e+02 Score=26.51 Aligned_cols=53 Identities=19% Similarity=0.055 Sum_probs=37.0
Q ss_pred EEEeeCCChHHHHHHHHHHH------cCC--eEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 024040 71 VLIELTSGNTGIGLAFIAAS------RGY--KLIIIMPSTYSIERRIILRALGAEVYLADP 123 (273)
Q Consensus 71 ~vv~~ssGN~g~a~A~~a~~------~g~--~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 123 (273)
.++..++|..+..+|+.+.. .++ .-.|++|..+-......+...|++++.++-
T Consensus 80 ~~v~~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~~v~~~G~~pv~vdv 140 (438)
T PRK15407 80 YALLVNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFPTTVNPIIQNGLVPVFVDV 140 (438)
T ss_pred eEEEECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcHHHHHHHHHcCCEEEEEec
Confidence 37777778888777776541 133 235777776666677788889999998874
No 354
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=42.42 E-value=1.7e+02 Score=26.33 Aligned_cols=52 Identities=12% Similarity=-0.108 Sum_probs=29.6
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCC
Q 024040 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPA 124 (273)
Q Consensus 72 vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~ 124 (273)
|+..+++..++.++..+- ..-.-.|+++.-+-..-....+.+|++++.++.+
T Consensus 91 i~~t~G~~~~l~~~~~~~-~~~gd~vli~~P~y~~~~~~~~~~g~~~~~v~~~ 142 (371)
T PRK05166 91 IILGNGSEDLIAVICRAV-LRPGDRVVTLYPSFPLHEDYPTMMGARVERVTVT 142 (371)
T ss_pred EEEcCCHHHHHHHHHHHh-cCCCCEEEEcCCChHHHHHHHHHcCCeEEEeecC
Confidence 666666666666554332 2222234444323334456678899999988653
No 355
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=42.41 E-value=1.8e+02 Score=25.90 Aligned_cols=85 Identities=13% Similarity=0.056 Sum_probs=49.5
Q ss_pred HHHHHHHHcCCeEEEEec---CC-CCHH----HHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCC-CeEeeCCCCCC
Q 024040 83 GLAFIAASRGYKLIIIMP---ST-YSIE----RRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTP-NGYILGQFENP 153 (273)
Q Consensus 83 a~A~~a~~~g~~~~i~~p---~~-~~~~----~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~ 153 (273)
++.|.++++|++..-++. +. .+.. -++.++..+.+++++..... -+.++.++++.+ ...+++++...
T Consensus 212 af~Yf~~~ygl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e~~~~----~~~~~~la~e~g~~v~~ldpl~~~ 287 (311)
T PRK09545 212 AYGYFEKHYGLTPLGHFTVNPEIQPGAQRLHEIRTQLVEQKATCVFAEPQFR----PAVIESVAKGTSVRMGTLDPLGTN 287 (311)
T ss_pred hHHHHHHhCCCceeeeeccCCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCC----hHHHHHHHHhcCCeEEEecccccc
Confidence 789999999999765442 21 2222 35667788999999986422 234555555553 22345666543
Q ss_pred cchH-hhhhchHHHHHHhh
Q 024040 154 ANPE-IHYETTGPEIWNDS 171 (273)
Q Consensus 154 ~~~~-~g~~t~~~Ei~~q~ 171 (273)
.... ..|..+..+.++++
T Consensus 288 ~~~~~~~Y~~~m~~n~~~l 306 (311)
T PRK09545 288 IKLGKDSYSEFLSQLANQY 306 (311)
T ss_pred ccCCHhHHHHHHHHHHHHH
Confidence 3221 24655555555544
No 356
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=42.35 E-value=2e+02 Score=23.89 Aligned_cols=53 Identities=15% Similarity=0.135 Sum_probs=35.6
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCC
Q 024040 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLADP 123 (273)
Q Consensus 71 ~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~~ 123 (273)
.+|+..+|.-|.++|....+.|.+++++-..... ....+.++..|.++..+..
T Consensus 3 ~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~ 56 (254)
T TIGR02415 3 ALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGGKAVAYKL 56 (254)
T ss_pred EEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEc
Confidence 3778888889999999988999987666543111 1223455667877765543
No 357
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=42.32 E-value=1.6e+02 Score=26.26 Aligned_cols=46 Identities=24% Similarity=0.304 Sum_probs=32.8
Q ss_pred CChHHHHHHHHHHHcCCeEEEEecCCCC--HHHHHH-HHHcCCEEEEeC
Q 024040 77 SGNTGIGLAFIAASRGYKLIIIMPSTYS--IERRII-LRALGAEVYLAD 122 (273)
Q Consensus 77 sGN~g~a~A~~a~~~g~~~~i~~p~~~~--~~~~~~-~~~~Ga~v~~~~ 122 (273)
.+|.+++++..++++|++++++.|+.-. ...++. .+..|.++...+
T Consensus 161 ~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~ 209 (304)
T PRK00779 161 GNNVANSLLLAAALLGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTH 209 (304)
T ss_pred CCccHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEEc
Confidence 4789999999999999999999987532 222222 455788776654
No 358
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=42.27 E-value=2e+02 Score=23.96 Aligned_cols=54 Identities=26% Similarity=0.135 Sum_probs=34.8
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeC
Q 024040 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLAD 122 (273)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~ 122 (273)
...+|+..+|.-|.++|....+.|.+++++...... ......++..+.++..+.
T Consensus 10 k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~ 64 (254)
T PRK08085 10 KNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGIKAHAAP 64 (254)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEe
Confidence 345888888999999999988889887765432111 112234445566665554
No 359
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=42.25 E-value=93 Score=30.56 Aligned_cols=50 Identities=18% Similarity=0.303 Sum_probs=40.8
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 024040 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (273)
Q Consensus 71 ~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 123 (273)
+++.+..|..|+.+|..-...|++++++= .++.+.+.++.+|.+++.-+.
T Consensus 402 ~vII~G~Gr~G~~va~~L~~~g~~vvvID---~d~~~v~~~~~~g~~v~~GDa 451 (601)
T PRK03659 402 QVIIVGFGRFGQVIGRLLMANKMRITVLE---RDISAVNLMRKYGYKVYYGDA 451 (601)
T ss_pred CEEEecCchHHHHHHHHHHhCCCCEEEEE---CCHHHHHHHHhCCCeEEEeeC
Confidence 48999999999999999999999987763 345778888888888777654
No 360
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=42.19 E-value=56 Score=31.09 Aligned_cols=50 Identities=18% Similarity=0.174 Sum_probs=38.0
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecCC--------------CCH----HHHHHHHHcCCEEEE
Q 024040 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPST--------------YSI----ERRIILRALGAEVYL 120 (273)
Q Consensus 71 ~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~--------------~~~----~~~~~~~~~Ga~v~~ 120 (273)
.|+...+|-.|.+.|...++.|.++++|-... .+. ..++.++.+|.+++.
T Consensus 145 ~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~ 212 (485)
T TIGR01317 145 KVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVT 212 (485)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEEC
Confidence 48889999999999999999999999985321 111 234567778988864
No 361
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=42.06 E-value=2.3e+02 Score=24.52 Aligned_cols=45 Identities=20% Similarity=0.152 Sum_probs=31.2
Q ss_pred hHHHHHHhhCCCcCEEEEecCCCccHHHHHHHHHhhC----CCcEEEEEecC
Q 024040 163 TGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKN----PNIKVYGIEPS 210 (273)
Q Consensus 163 ~~~Ei~~q~~~~~d~iv~p~G~Gg~~~Gi~~~~k~~~----~~~~vigVe~~ 210 (273)
...+++++- .++|+|++. +...+.|+..++++.+ .++.|+|.+-.
T Consensus 192 ~~~~~l~~~-~~~~ai~~~--~d~~A~g~~~al~~~g~~vp~di~vig~D~~ 240 (305)
T cd06324 192 QAENLLKRY-PDVRLIWAA--NDQMAFGALRAAKEAGRKPGRDVLFGGVNWS 240 (305)
T ss_pred HHHHHHHHC-CCccEEEEC--CchHHHHHHHHHHHcCCCcCCCEEEEecCCC
Confidence 445555543 468988864 5667779999998876 35788888644
No 362
>PRK07806 short chain dehydrogenase; Provisional
Probab=42.04 E-value=2e+02 Score=23.82 Aligned_cols=55 Identities=20% Similarity=0.171 Sum_probs=36.1
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCH--HHHHHHHHcCCEEEEeCC
Q 024040 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSI--ERRIILRALGAEVYLADP 123 (273)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~--~~~~~~~~~Ga~v~~~~~ 123 (273)
.+.+|+..+|.-|.+++......|.+++++....... .-...++..|.++..+..
T Consensus 7 k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~ 63 (248)
T PRK07806 7 KTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGA 63 (248)
T ss_pred cEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEc
Confidence 3557888888899999999888899988776532111 112334556776655543
No 363
>PRK09414 glutamate dehydrogenase; Provisional
Probab=41.95 E-value=1.2e+02 Score=28.59 Aligned_cols=53 Identities=13% Similarity=-0.063 Sum_probs=38.4
Q ss_pred hhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEec
Q 024040 48 KDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMP 100 (273)
Q Consensus 48 K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p 100 (273)
--||..+.+..+.+.........+|+...-||-|..+|.....+|.+++.+..
T Consensus 211 Tg~Gv~~~~~~~~~~~~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsD 263 (445)
T PRK09414 211 TGYGLVYFAEEMLKARGDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSD 263 (445)
T ss_pred ccHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEc
Confidence 34677777777765433333334588889999999999998888888777655
No 364
>PRK07791 short chain dehydrogenase; Provisional
Probab=41.93 E-value=2.3e+02 Score=24.46 Aligned_cols=72 Identities=14% Similarity=0.171 Sum_probs=42.4
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCC----------CCHHHHHHHHHcCCEEEEeCCC-CChhHHHHHHHHH
Q 024040 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPST----------YSIERRIILRALGAEVYLADPA-VGFEGFVKKGEEI 137 (273)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~----------~~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~ 137 (273)
...+|+..++.-|.++|....+.|.+++++.... ......+.++..|.++..+..+ .+.++..+...+.
T Consensus 7 k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 86 (286)
T PRK07791 7 RVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANLVDAA 86 (286)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHHHHHH
Confidence 4557888888888999988888999877764321 0112234455567776655432 2334444444444
Q ss_pred HHh
Q 024040 138 LNR 140 (273)
Q Consensus 138 ~~~ 140 (273)
.++
T Consensus 87 ~~~ 89 (286)
T PRK07791 87 VET 89 (286)
T ss_pred HHh
Confidence 444
No 365
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=41.75 E-value=2.4e+02 Score=24.55 Aligned_cols=56 Identities=30% Similarity=0.464 Sum_probs=38.9
Q ss_pred cCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEe
Q 024040 62 KGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLA 121 (273)
Q Consensus 62 ~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~ 121 (273)
...+.++.+.+| ..+|..|.+++..|+.+|.++++..+ +..+.+.++.+|++-+..
T Consensus 160 ~~~~~~~~~vli-~g~g~vG~~~~~la~~~G~~V~~~~~---s~~~~~~~~~~g~~~~~~ 215 (338)
T cd08254 160 AGEVKPGETVLV-IGLGGLGLNAVQIAKAMGAAVIAVDI---KEEKLELAKELGADEVLN 215 (338)
T ss_pred ccCCCCCCEEEE-ECCcHHHHHHHHHHHHcCCEEEEEcC---CHHHHHHHHHhCCCEEEc
Confidence 344667767555 45678899999999999998554433 456777778888854443
No 366
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=41.70 E-value=37 Score=32.36 Aligned_cols=42 Identities=24% Similarity=0.336 Sum_probs=31.1
Q ss_pred CCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 024040 76 TSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (273)
Q Consensus 76 ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 123 (273)
|||-+|.++|.++...|-+++++..+... . .-.|.+++.+..
T Consensus 280 SSGkmG~alA~aa~~~GA~VtlI~Gp~~~----~--~p~~v~~i~V~t 321 (475)
T PRK13982 280 SSGKQGFAIAAAAAAAGAEVTLISGPVDL----A--DPQGVKVIHVES 321 (475)
T ss_pred CchHHHHHHHHHHHHCCCcEEEEeCCcCC----C--CCCCceEEEecC
Confidence 78999999999999999999999844211 0 124667776653
No 367
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=41.61 E-value=2.9e+02 Score=26.45 Aligned_cols=85 Identities=19% Similarity=0.198 Sum_probs=44.8
Q ss_pred chhhHHHHHHHHHHHHcCCCCCCCeEEEee-CCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHH-HcCCEEEEeCC
Q 024040 46 SVKDRIAYSMIKDAEDKGLITPGKTVLIEL-TSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILR-ALGAEVYLADP 123 (273)
Q Consensus 46 S~K~R~a~~~~~~a~~~g~~~~g~~~vv~~-ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~-~~Ga~v~~~~~ 123 (273)
++++..+...+..|.+-+. .. ||++ .+|.+++.+|.+ +-..+.+++.+.. ...+++. .+|..-+.++.
T Consensus 358 ~~~~aia~sAv~~A~~l~a----ka-IVv~T~SG~TA~~lS~~--RP~~pIiavT~~~---~~~r~l~l~~GV~p~~~~~ 427 (480)
T cd00288 358 STTEAVAMSAVRAAFELGA----KA-IVVLTTSGRTARLVSKY--RPNAPIIAVTRNE---QTARQLHLYRGVYPVLFEE 427 (480)
T ss_pred ChHHHHHHHHHHHHHhcCC----CE-EEEECCCcHHHHHHHhh--CCCCCEEEEcCCH---HHhhheeeccCcEEEEecc
Confidence 3455566666666665543 33 5555 558777766554 3457777776652 2222222 34766666553
Q ss_pred C-----CChhHHHHHHHHHHHh
Q 024040 124 A-----VGFEGFVKKGEEILNR 140 (273)
Q Consensus 124 ~-----~~~~~~~~~a~~~~~~ 140 (273)
. .+.++..+.+.+.+.+
T Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~ 449 (480)
T cd00288 428 PKPGWQEDTDARLKAAVNVAKE 449 (480)
T ss_pred cccccCCCHHHHHHHHHHHHHH
Confidence 2 2334445555555444
No 368
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=41.60 E-value=1.7e+02 Score=26.53 Aligned_cols=51 Identities=22% Similarity=0.276 Sum_probs=35.4
Q ss_pred EEeeCCC--hHHHHHHHHHHHcCCeEEEEecCCC--CHHHHHH----HHHcCCEEEEeC
Q 024040 72 LIELTSG--NTGIGLAFIAASRGYKLIIIMPSTY--SIERRII----LRALGAEVYLAD 122 (273)
Q Consensus 72 vv~~ssG--N~g~a~A~~a~~~g~~~~i~~p~~~--~~~~~~~----~~~~Ga~v~~~~ 122 (273)
|+-...+ |.+.+++..++++|++++++.|+.. ++..++. .+..|.++...+
T Consensus 158 va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 216 (331)
T PRK02102 158 LAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITITE 216 (331)
T ss_pred EEEECCCcccHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEc
Confidence 5544443 7899999999999999999999854 2223322 244688877664
No 369
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=41.53 E-value=1.7e+02 Score=24.18 Aligned_cols=54 Identities=28% Similarity=0.287 Sum_probs=35.8
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeCC
Q 024040 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS--IERRIILRALGAEVYLADP 123 (273)
Q Consensus 70 ~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~--~~~~~~~~~~Ga~v~~~~~ 123 (273)
+.+|+..+|.-|.++|..-.+.|.++++....... ......++..+.+++.+..
T Consensus 4 ~ilItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (248)
T PRK06947 4 VVLITGASRGIGRATAVLAAARGWSVGINYARDAAAAEETADAVRAAGGRACVVAG 59 (248)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEe
Confidence 34778888889999999988889887665433211 1223445667777766543
No 370
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=41.51 E-value=1.8e+02 Score=25.83 Aligned_cols=45 Identities=20% Similarity=0.286 Sum_probs=31.8
Q ss_pred ChHHHHHHHHHHHcCCeEEEEecCCC--CHHHHHH----HHHcCCEEEEeC
Q 024040 78 GNTGIGLAFIAASRGYKLIIIMPSTY--SIERRII----LRALGAEVYLAD 122 (273)
Q Consensus 78 GN~g~a~A~~a~~~g~~~~i~~p~~~--~~~~~~~----~~~~Ga~v~~~~ 122 (273)
+|.++|++..++++|++++++.|+.. +....+. .+..|+++...+
T Consensus 158 ~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 208 (304)
T TIGR00658 158 NNVCNSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTH 208 (304)
T ss_pred CchHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 68889999999999999999888753 2233333 245688776654
No 371
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=41.37 E-value=3.4e+02 Score=26.22 Aligned_cols=103 Identities=27% Similarity=0.279 Sum_probs=64.6
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCC
Q 024040 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQF 150 (273)
Q Consensus 71 ~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 150 (273)
+|..-.-|+-|..+|..++.+|++++.+=|.. +..+ ...+|.+.. + ++ ++.++. +...++--
T Consensus 142 tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~-~~~~---~~~~g~~~~--~----l~-------ell~~a-DiV~l~lP 203 (526)
T PRK13581 142 TLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYI-SPER---AAQLGVELV--S----LD-------ELLARA-DFITLHTP 203 (526)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEECCCC-ChhH---HHhcCCEEE--c----HH-------HHHhhC-CEEEEccC
Confidence 47777889999999999999999988886642 2222 234565432 1 22 233333 44444332
Q ss_pred CCCcchHhhhhchHHHHHHhhCCCcCEEEEecCCCccHH--HHHHHHHh
Q 024040 151 ENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGGTVT--GAGRFLKE 197 (273)
Q Consensus 151 ~~~~~~~~g~~t~~~Ei~~q~~~~~d~iv~p~G~Gg~~~--Gi~~~~k~ 197 (273)
.++. -...+..|.++++ +++.+++-++.|+.+- .+..+++.
T Consensus 204 ~t~~----t~~li~~~~l~~m--k~ga~lIN~aRG~~vde~aL~~aL~~ 246 (526)
T PRK13581 204 LTPE----TRGLIGAEELAKM--KPGVRIINCARGGIIDEAALAEALKS 246 (526)
T ss_pred CChH----hhcCcCHHHHhcC--CCCeEEEECCCCceeCHHHHHHHHhc
Confidence 2322 2334567888888 5789999999999864 34444443
No 372
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=41.16 E-value=44 Score=29.28 Aligned_cols=31 Identities=23% Similarity=0.310 Sum_probs=25.9
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecC
Q 024040 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPS 101 (273)
Q Consensus 71 ~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~ 101 (273)
.|+...+|-.|.++|.+.++.|++++||=..
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~ 33 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERR 33 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESS
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhc
Confidence 3888999999999999999999999998653
No 373
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=41.11 E-value=2.3e+02 Score=25.68 Aligned_cols=82 Identities=16% Similarity=0.291 Sum_probs=49.9
Q ss_pred CCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecC---CCCHH-HHHHHHHcCCEEEEe--CCC-CC-hhHHHHHHH
Q 024040 64 LITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPS---TYSIE-RRIILRALGAEVYLA--DPA-VG-FEGFVKKGE 135 (273)
Q Consensus 64 ~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~---~~~~~-~~~~~~~~Ga~v~~~--~~~-~~-~~~~~~~a~ 135 (273)
.+.||+. ++..+.|-+|.-.|=.++++|.++.++--+ ..+-+ -.+.+..+--+++++ ..+ .+ .++-.+...
T Consensus 88 ~lePgd~-vLv~~~G~wg~ra~D~~~r~ga~V~~v~~~~G~~~~le~i~~~lsqh~p~~vfv~hgdsSTgV~q~~~~~~g 166 (385)
T KOG2862|consen 88 LLEPGDN-VLVVSTGTWGQRAADCARRYGAEVDVVEADIGQAVPLEEITEKLSQHKPKAVFVTHGDSSTGVLQDLLAISG 166 (385)
T ss_pred hcCCCCe-EEEEEechHHHHHHHHHHhhCceeeEEecCcccCccHHHHHHHHHhcCCceEEEEecCccccccchHHHHHH
Confidence 3557777 899999999999999999999999988322 22222 233344444444443 222 11 234455566
Q ss_pred HHHHhCCCeEee
Q 024040 136 EILNRTPNGYIL 147 (273)
Q Consensus 136 ~~~~~~~~~~~~ 147 (273)
+++.+. ..+++
T Consensus 167 ~lc~k~-~~lll 177 (385)
T KOG2862|consen 167 ELCHKH-EALLL 177 (385)
T ss_pred HHhhcC-CeEEE
Confidence 666655 45543
No 374
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=41.10 E-value=2.4e+02 Score=26.84 Aligned_cols=49 Identities=27% Similarity=0.210 Sum_probs=30.1
Q ss_pred eEEEeeCCChHH---HHHHHHHHHcCCeEEEEecCCCC-H---HHHHHHHHcCCEE
Q 024040 70 TVLIELTSGNTG---IGLAFIAASRGYKLIIIMPSTYS-I---ERRIILRALGAEV 118 (273)
Q Consensus 70 ~~vv~~ssGN~g---~a~A~~a~~~g~~~~i~~p~~~~-~---~~~~~~~~~Ga~v 118 (273)
+.+|.+..||.| ..+|......|.++.|+++.... . ...++++.+|..+
T Consensus 61 ~VlVlcG~GNNGGDGlv~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~g~~~ 116 (462)
T PLN03049 61 RVLALCGPGNNGGDGLVAARHLHHFGYKPSICYPKRTDKPLYNGLVTQLESLSVPF 116 (462)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHCCCceEEEEECCCCCHHHHHHHHHHHHcCCce
Confidence 446777777765 45566666679999999865322 1 1234455566443
No 375
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=41.03 E-value=1.8e+02 Score=23.46 Aligned_cols=95 Identities=20% Similarity=0.217 Sum_probs=52.1
Q ss_pred CCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCC
Q 024040 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTP 142 (273)
Q Consensus 63 g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~ 142 (273)
+.+..|.. ++...=|+-|.++|..++.+|.+++|+- +.+.+..+-...|=++... ++ ...+.
T Consensus 18 ~~~l~Gk~-vvV~GYG~vG~g~A~~lr~~Ga~V~V~e---~DPi~alqA~~dGf~v~~~------~~-------a~~~a- 79 (162)
T PF00670_consen 18 NLMLAGKR-VVVIGYGKVGKGIARALRGLGARVTVTE---IDPIRALQAAMDGFEVMTL------EE-------ALRDA- 79 (162)
T ss_dssp -S--TTSE-EEEE--SHHHHHHHHHHHHTT-EEEEE----SSHHHHHHHHHTT-EEE-H------HH-------HTTT--
T ss_pred ceeeCCCE-EEEeCCCcccHHHHHHHhhCCCEEEEEE---CChHHHHHhhhcCcEecCH------HH-------HHhhC-
Confidence 34444544 8889999999999999999998887763 4556655555567666432 11 12222
Q ss_pred CeEeeCCCCCCcchHhhhhchHHHHHHhhCCCcCEEEEecCCC
Q 024040 143 NGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTG 185 (273)
Q Consensus 143 ~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~iv~p~G~G 185 (273)
+ +++.--.+.. .+-.|.++|++ -+.|++.+|.-
T Consensus 80 d-i~vtaTG~~~-------vi~~e~~~~mk--dgail~n~Gh~ 112 (162)
T PF00670_consen 80 D-IFVTATGNKD-------VITGEHFRQMK--DGAILANAGHF 112 (162)
T ss_dssp S-EEEE-SSSSS-------SB-HHHHHHS---TTEEEEESSSS
T ss_pred C-EEEECCCCcc-------ccCHHHHHHhc--CCeEEeccCcC
Confidence 3 3332222222 24557788883 47888888753
No 376
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=41.01 E-value=1.3e+02 Score=27.00 Aligned_cols=51 Identities=20% Similarity=0.107 Sum_probs=37.6
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCe-EEEEecCC-----CCHHHHHHHHHcCCEEEEe
Q 024040 71 VLIELTSGNTGIGLAFIAASRGYK-LIIIMPST-----YSIERRIILRALGAEVYLA 121 (273)
Q Consensus 71 ~vv~~ssGN~g~a~A~~a~~~g~~-~~i~~p~~-----~~~~~~~~~~~~Ga~v~~~ 121 (273)
.++...+|+.|.-+|......|.+ ++++.+.. .....++.++..|.+++.-
T Consensus 174 ~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~~~~~~~~~~~l~~~gi~i~~~ 230 (352)
T PRK12770 174 KVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINEAPAGKYEIERLIARGVEFLEL 230 (352)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhhCCCCHHHHHHHHHcCCEEeec
Confidence 488899999999999887888997 88886532 1234456677888877653
No 377
>PRK08264 short chain dehydrogenase; Validated
Probab=40.82 E-value=1.5e+02 Score=24.35 Aligned_cols=33 Identities=21% Similarity=0.203 Sum_probs=26.4
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCC-eEEEEecC
Q 024040 69 KTVLIELTSGNTGIGLAFIAASRGY-KLIIIMPS 101 (273)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~-~~~i~~p~ 101 (273)
.+.+|+..+|.-|.++|....+.|. +++++...
T Consensus 7 ~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~ 40 (238)
T PRK08264 7 KVVLVTGANRGIGRAFVEQLLARGAAKVYAAARD 40 (238)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCcccEEEEecC
Confidence 3457888889999999999999998 77666543
No 378
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=40.63 E-value=67 Score=29.45 Aligned_cols=50 Identities=20% Similarity=0.234 Sum_probs=36.5
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecCCC------CHH----HHHHHHHcCCEEEE
Q 024040 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTY------SIE----RRIILRALGAEVYL 120 (273)
Q Consensus 71 ~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~------~~~----~~~~~~~~Ga~v~~ 120 (273)
.++...+|..|.-+|...+.+|.+++++.+... ++. ..+.++..|.+++.
T Consensus 146 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~ 205 (396)
T PRK09754 146 SVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILL 205 (396)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEEEe
Confidence 388888999999999999999999999876421 221 23345667777654
No 379
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=40.49 E-value=2.6e+02 Score=24.63 Aligned_cols=52 Identities=25% Similarity=0.413 Sum_probs=36.7
Q ss_pred cCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 024040 62 KGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAE 117 (273)
Q Consensus 62 ~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~ 117 (273)
...+.++.+-+|.. .|..|.+++..|+.+|++.+++.. +..+.+.++.+|++
T Consensus 160 ~~~~~~~~~vlV~g-~g~vg~~~~~~a~~~G~~vi~~~~---~~~~~~~~~~~g~~ 211 (345)
T cd08260 160 QARVKPGEWVAVHG-CGGVGLSAVMIASALGARVIAVDI---DDDKLELARELGAV 211 (345)
T ss_pred ccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEEeC---CHHHHHHHHHhCCC
Confidence 34456666655555 788999999999999998665543 34566777778873
No 380
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=40.44 E-value=1.2e+02 Score=31.97 Aligned_cols=51 Identities=14% Similarity=0.248 Sum_probs=38.5
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCC--------------CCH----HHHHHHHHcCCEEEE
Q 024040 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPST--------------YSI----ERRIILRALGAEVYL 120 (273)
Q Consensus 70 ~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~--------------~~~----~~~~~~~~~Ga~v~~ 120 (273)
+.|+.-.+|..|++.|+..++.|.+++||=... .+. ..++.++.+|.+++.
T Consensus 540 KkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~~ 608 (1019)
T PRK09853 540 KKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEF 608 (1019)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHcCCEEEe
Confidence 348999999999999999999999999886432 111 224567778888765
No 381
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=40.38 E-value=43 Score=25.98 Aligned_cols=30 Identities=27% Similarity=0.506 Sum_probs=25.5
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecC
Q 024040 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPS 101 (273)
Q Consensus 72 vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~ 101 (273)
++...+|.-+.+++..++.+|++++++=|.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r 30 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPR 30 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCC
Confidence 456788999999999999999999999876
No 382
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=40.33 E-value=2.3e+02 Score=23.92 Aligned_cols=59 Identities=19% Similarity=0.130 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHH
Q 024040 50 RIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILR 112 (273)
Q Consensus 50 R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~ 112 (273)
||-.+.+..+.+.|. ..-+|.---=--+..+=..|+..|+..+.++.++++.++.+.+.
T Consensus 110 yG~e~~iq~ak~aGa----nGfiivDlPpEEa~~~Rne~~k~gislvpLvaPsTtdeRmell~ 168 (268)
T KOG4175|consen 110 YGVENYIQVAKNAGA----NGFIIVDLPPEEAETLRNEARKHGISLVPLVAPSTTDERMELLV 168 (268)
T ss_pred hhHHHHHHHHHhcCC----CceEeccCChHHHHHHHHHHHhcCceEEEeeCCCChHHHHHHHH
Confidence 455666666666654 11122222233455566667777777777666666666665554
No 383
>CHL00194 ycf39 Ycf39; Provisional
Probab=40.24 E-value=1.3e+02 Score=26.53 Aligned_cols=31 Identities=19% Similarity=0.339 Sum_probs=26.6
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecC
Q 024040 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPS 101 (273)
Q Consensus 71 ~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~ 101 (273)
.+|+..+|.-|..++......|.++++++..
T Consensus 3 IlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~ 33 (317)
T CHL00194 3 LLVIGATGTLGRQIVRQALDEGYQVRCLVRN 33 (317)
T ss_pred EEEECCCcHHHHHHHHHHHHCCCeEEEEEcC
Confidence 4788889999999999988889998888764
No 384
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=40.20 E-value=47 Score=22.16 Aligned_cols=27 Identities=22% Similarity=0.522 Sum_probs=21.8
Q ss_pred CCChHHHHHHHHHHHcCCeEEEEecCC
Q 024040 76 TSGNTGIGLAFIAASRGYKLIIIMPST 102 (273)
Q Consensus 76 ssGN~g~a~A~~a~~~g~~~~i~~p~~ 102 (273)
.+|=.|++.|+..++.|.+++|+=...
T Consensus 3 GaG~sGl~aA~~L~~~g~~v~v~E~~~ 29 (68)
T PF13450_consen 3 GAGISGLAAAYYLAKAGYRVTVFEKND 29 (68)
T ss_dssp S-SHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred eeCHHHHHHHHHHHHCCCcEEEEecCc
Confidence 468899999999999999999886543
No 385
>PRK06847 hypothetical protein; Provisional
Probab=40.13 E-value=43 Score=30.10 Aligned_cols=30 Identities=13% Similarity=0.195 Sum_probs=27.0
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEec
Q 024040 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMP 100 (273)
Q Consensus 71 ~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p 100 (273)
.|+...+|-.|.++|...++.|++++|+=.
T Consensus 6 ~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~ 35 (375)
T PRK06847 6 KVLIVGGGIGGLSAAIALRRAGIAVDLVEI 35 (375)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCEEEEec
Confidence 388899999999999999999999988853
No 386
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=40.11 E-value=1.1e+02 Score=27.14 Aligned_cols=71 Identities=18% Similarity=0.180 Sum_probs=42.0
Q ss_pred CCC-ceEEEEeCCCCCCCchhhHHHH-HHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecC
Q 024040 29 GCV-ARIAAKLEMMQPCSSVKDRIAY-SMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPS 101 (273)
Q Consensus 29 ~~g-~~l~~K~E~~~ptGS~K~R~a~-~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~ 101 (273)
..| +|-..+.++-.-.|-+.|=... ..|... .-+...++.+ ++...+|-.++|++++....|.+-+.++..
T Consensus 86 ~iGAVNTl~~~~~g~l~G~NTD~~G~~~~L~~~-~~~~~~~~~~-vlilGAGGAarAv~~aL~~~g~~~i~V~NR 158 (283)
T COG0169 86 LIGAVNTLVREDDGKLRGYNTDGIGFLRALKEF-GLPVDVTGKR-VLILGAGGAARAVAFALAEAGAKRITVVNR 158 (283)
T ss_pred HhCCceEEEEccCCEEEEEcCCHHHHHHHHHhc-CCCcccCCCE-EEEECCcHHHHHHHHHHHHcCCCEEEEEeC
Confidence 356 5766666555556777775332 222221 1112223344 777788889999999999999754444443
No 387
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=40.10 E-value=42 Score=31.27 Aligned_cols=31 Identities=26% Similarity=0.449 Sum_probs=24.4
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecCC
Q 024040 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPST 102 (273)
Q Consensus 72 vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~ 102 (273)
||...+|-.|.+.|.+|++.|.++.++=+..
T Consensus 2 VVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~ 32 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIAAARAGAKVLLIEKGG 32 (428)
T ss_dssp EEEE--SHHHHHHHHHHHHTTS-EEEE-SSS
T ss_pred EEEECccHHHHHHHHHHHHCCCEEEEEECCc
Confidence 7888999999999999999999999987654
No 388
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=39.98 E-value=1.9e+02 Score=25.42 Aligned_cols=31 Identities=19% Similarity=0.300 Sum_probs=22.8
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecC
Q 024040 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPS 101 (273)
Q Consensus 71 ~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~ 101 (273)
+++...+|-.++|++++....|++-+.++..
T Consensus 126 ~vlvlGaGGaarAi~~~l~~~g~~~i~i~nR 156 (288)
T PRK12749 126 TMVLLGAGGASTAIGAQGAIEGLKEIKLFNR 156 (288)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence 3666677778999999888889865555544
No 389
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=39.90 E-value=2.3e+02 Score=23.82 Aligned_cols=54 Identities=20% Similarity=0.145 Sum_probs=37.1
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeC
Q 024040 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS--IERRIILRALGAEVYLAD 122 (273)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~--~~~~~~~~~~Ga~v~~~~ 122 (273)
...+|+..+|.-|.++|....+.|.++++......+ ....+.++..|.++..+.
T Consensus 8 k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~ 63 (261)
T PRK08936 8 KVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEIKKAGGEAIAVK 63 (261)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEE
Confidence 455788888889999999988999988776553322 122445556677776554
No 390
>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A.
Probab=39.89 E-value=1.1e+02 Score=28.00 Aligned_cols=86 Identities=14% Similarity=0.195 Sum_probs=50.8
Q ss_pred HHHHHHcC-CEEEEeCCCCCh-hHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhchHHHHHHhhCCCcCEEEEecCCC
Q 024040 108 RIILRALG-AEVYLADPAVGF-EGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTG 185 (273)
Q Consensus 108 ~~~~~~~G-a~v~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~iv~p~G~G 185 (273)
...++.+| .++.+++.+.-| .+..+.++++.++.++...-..| -|... .-+..+..+|.+. +||.|+-.+ .|
T Consensus 126 ~~~~~~~G~~r~~lvGSdYv~pre~Nri~r~~l~~~GgevvgE~Y-~plg~-td~~~ii~~I~~~---~Pd~V~stl-vG 199 (363)
T PF13433_consen 126 DYLLENFGAKRFYLVGSDYVYPRESNRIIRDLLEARGGEVVGERY-LPLGA-TDFDPIIAEIKAA---KPDFVFSTL-VG 199 (363)
T ss_dssp HHHHHHS--SEEEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEEE-E-S-H-HHHHHHHHHHHHH---T-SEEEEE---T
T ss_pred HHHHhccCCceEEEecCCccchHHHHHHHHHHHHHcCCEEEEEEE-ecCCc-hhHHHHHHHHHhh---CCCEEEEeC-cC
Confidence 45678899 999999865322 36778888888887544332222 12222 2355666666555 588666555 45
Q ss_pred ccHHHHHHHHHhhC
Q 024040 186 GTVTGAGRFLKEKN 199 (273)
Q Consensus 186 g~~~Gi~~~~k~~~ 199 (273)
......++.+++.+
T Consensus 200 ~s~~aF~r~~~~aG 213 (363)
T PF13433_consen 200 DSNVAFYRAYAAAG 213 (363)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHcC
Confidence 66667888888764
No 391
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=39.86 E-value=1.9e+02 Score=25.08 Aligned_cols=118 Identities=17% Similarity=0.146 Sum_probs=59.6
Q ss_pred HHHHHHHHH-HHcCCeEEEEecC-CCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchH
Q 024040 80 TGIGLAFIA-ASRGYKLIIIMPS-TYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPE 157 (273)
Q Consensus 80 ~g~a~A~~a-~~~g~~~~i~~p~-~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 157 (273)
-|+++-+++ +.+|-+...-++- +.-..-.+.+..-|-.|.+.++.. +-..+.+..+.++.++..++..++
T Consensus 71 DG~gvV~~ar~~~g~~~~~rv~G~Dl~~~Ll~~a~~~~~~vfllGgkp--~V~~~a~~~l~~~~p~l~ivg~h~------ 142 (253)
T COG1922 71 DGIGVVRAARRLLGQPLPERVAGTDLVEALLKRAAEEGKRVFLLGGKP--GVAEQAAAKLRAKYPGLKIVGSHD------ 142 (253)
T ss_pred CchhHHHHHHHHhCccCcccCChHHHHHHHHHHhCccCceEEEecCCH--HHHHHHHHHHHHHCCCceEEEecC------
Confidence 467788888 6677665433322 111222333333466788888642 234445566666665444443322
Q ss_pred hhhhchHH--HHHHhhC-CCcCEEEEecCCCccHHHHHHHHHhhCCCcEEEEE
Q 024040 158 IHYETTGP--EIWNDSG-GKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGI 207 (273)
Q Consensus 158 ~g~~t~~~--Ei~~q~~-~~~d~iv~p~G~Gg~~~Gi~~~~k~~~~~~~vigV 207 (273)
||-+-.. .|++.+. ..||.++|+.|.-.-=-=|...... .+..=.+||
T Consensus 143 -GYf~~~e~~~i~~~I~~s~pdil~VgmG~P~QE~wi~~~~~~-~~~~v~igV 193 (253)
T COG1922 143 -GYFDPEEEEAIVERIAASGPDILLVGMGVPRQEIWIARNRQQ-LPVAVAIGV 193 (253)
T ss_pred -CCCChhhHHHHHHHHHhcCCCEEEEeCCCchhHHHHHHhHHh-cCCceEEec
Confidence 2222222 2444442 3699999999976543333333222 233334554
No 392
>PLN02623 pyruvate kinase
Probab=39.80 E-value=3.8e+02 Score=26.37 Aligned_cols=123 Identities=16% Similarity=0.085 Sum_probs=70.6
Q ss_pred HHHHHHHHHcCCeEEEEe---------cC--CCCHHHHHHHHHcCCEEEEeCCC---CCh-hHHHHHHHHHHHhCCCeE-
Q 024040 82 IGLAFIAASRGYKLIIIM---------PS--TYSIERRIILRALGAEVYLADPA---VGF-EGFVKKGEEILNRTPNGY- 145 (273)
Q Consensus 82 ~a~A~~a~~~g~~~~i~~---------p~--~~~~~~~~~~~~~Ga~v~~~~~~---~~~-~~~~~~a~~~~~~~~~~~- 145 (273)
.-+...|++.|.++.+.. |. .+....+......|++.+....+ +.| .++.+...+.+++-+..+
T Consensus 366 k~Ii~~~~~~gKpvivaTQMLESMi~~~~PTRAEv~Dva~av~dG~d~vmLs~Eta~G~yPveaV~~m~~I~~~aE~~~~ 445 (581)
T PLN02623 366 EEIIRRCRSMGKPVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTEATLP 445 (581)
T ss_pred HHHHHHHHHhCCCEEEECchhhhcccCCCCCchhHHHHHHHHHcCCCEEEecchhhcCcCHHHHHHHHHHHHHHHHhhcc
Confidence 345567999999998543 32 12234566667789999888753 122 345555555443322111
Q ss_pred ee------CCCCCCcchHhhhhchHHHHHHhhCCCcCEEEEecCCCccHHHHHHHHHhhCCCcEEEEEecCCC
Q 024040 146 IL------GQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSES 212 (273)
Q Consensus 146 ~~------~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~iv~p~G~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~ 212 (273)
+. ....+. ....-....+.++.+.++ .. ||+..-+|.++--++ ...|.+.|+++.+...
T Consensus 446 ~~~~~~~~~~~~~~-~~~~~ia~sA~~~A~~l~--a~-Ivv~T~sG~tA~~lS----r~RP~~pI~avT~~~~ 510 (581)
T PLN02623 446 EGTTPPNLGQAFKN-HMSEMFAFHATMMANTLG--TS-IIVFTRTGFMAILLS----HYRPSGTIFAFTNEKR 510 (581)
T ss_pred cchhhhhhccccCC-ChHHHHHHHHHHHHHhcC--Cc-EEEECCCcHHHHHHH----hhCCCCCEEEECCCHH
Confidence 10 010111 111234455567777774 34 888988888865544 4478899999986543
No 393
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=39.69 E-value=1.7e+02 Score=27.64 Aligned_cols=49 Identities=24% Similarity=0.244 Sum_probs=35.6
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecCCC--CHHHHHHHHHcCCEEEE
Q 024040 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTY--SIERRIILRALGAEVYL 120 (273)
Q Consensus 72 vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~--~~~~~~~~~~~Ga~v~~ 120 (273)
++....|..|+++|.+.+..|.+++++-.... .....+.++..|.+++.
T Consensus 19 v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~ 69 (480)
T PRK01438 19 VVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRL 69 (480)
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEE
Confidence 77788899999999999999999887643322 12234567777877653
No 394
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=39.66 E-value=2.3e+02 Score=23.75 Aligned_cols=55 Identities=22% Similarity=0.242 Sum_probs=35.1
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCC
Q 024040 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLADP 123 (273)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~~ 123 (273)
.+.+|+..+|--|.++|......|.+++++...... +.....++..+.++..+..
T Consensus 13 k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~ 68 (259)
T PRK08213 13 KTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGIDALWIAA 68 (259)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEc
Confidence 355788888889999998888889987665443111 1122334556777766554
No 395
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=39.62 E-value=1.5e+02 Score=25.34 Aligned_cols=49 Identities=14% Similarity=0.053 Sum_probs=34.4
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecCC---CCHHHHHHHHHc-CCEEE
Q 024040 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPST---YSIERRIILRAL-GAEVY 119 (273)
Q Consensus 71 ~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~---~~~~~~~~~~~~-Ga~v~ 119 (273)
.++...+|+.|.-+|...+..+.+++++.+.. ..+...+.++.. |.+++
T Consensus 143 ~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~~~~~~~~~l~~~~gv~~~ 195 (300)
T TIGR01292 143 EVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFRAEKILLDRLRKNPNIEFL 195 (300)
T ss_pred EEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccCcCHHHHHHHHhCCCeEEE
Confidence 38888999999999999998999999888643 122333444444 55544
No 396
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=39.51 E-value=2.3e+02 Score=23.72 Aligned_cols=54 Identities=15% Similarity=0.186 Sum_probs=34.8
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeC
Q 024040 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLAD 122 (273)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~ 122 (273)
.+.+|+..+|.-|.++|......|.+++++.+.... +.-...++..|.++..+.
T Consensus 12 k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~ 66 (255)
T PRK06113 12 KCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACR 66 (255)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 355778888889999999888889987776543211 111233455676665544
No 397
>PRK09291 short chain dehydrogenase; Provisional
Probab=39.44 E-value=1.3e+02 Score=25.09 Aligned_cols=32 Identities=25% Similarity=0.261 Sum_probs=27.2
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecC
Q 024040 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPS 101 (273)
Q Consensus 70 ~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~ 101 (273)
+.+|+..+|.-|.+++......|.+++++...
T Consensus 4 ~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~ 35 (257)
T PRK09291 4 TILITGAGSGFGREVALRLARKGHNVIAGVQI 35 (257)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 45888899999999999999999998887654
No 398
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=39.41 E-value=2e+02 Score=25.28 Aligned_cols=53 Identities=28% Similarity=0.448 Sum_probs=37.0
Q ss_pred cCCCCCCCeEEEeeCCChHHHHHHHHHHHcC-CeEEEEecCCCCHHHHHHHHHcCCEE
Q 024040 62 KGLITPGKTVLIELTSGNTGIGLAFIAASRG-YKLIIIMPSTYSIERRIILRALGAEV 118 (273)
Q Consensus 62 ~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g-~~~~i~~p~~~~~~~~~~~~~~Ga~v 118 (273)
...+.++.+.+| ..+|..|.+++..|+.+| .++++ +. .+..|...++.+|++-
T Consensus 161 ~~~~~~g~~vlI-~g~g~~g~~~~~~a~~~G~~~v~~-~~--~~~~~~~~~~~~g~~~ 214 (345)
T cd08286 161 NGKVKPGDTVAI-VGAGPVGLAALLTAQLYSPSKIIM-VD--LDDNRLEVAKKLGATH 214 (345)
T ss_pred hcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCCeEEE-Ec--CCHHHHHHHHHhCCCc
Confidence 334566667555 456999999999999999 55444 32 3557777888889843
No 399
>PRK04148 hypothetical protein; Provisional
Probab=39.37 E-value=1.6e+02 Score=22.83 Aligned_cols=48 Identities=21% Similarity=0.318 Sum_probs=36.1
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeC
Q 024040 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLAD 122 (273)
Q Consensus 71 ~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~ 122 (273)
.+++-..| +|.++|..-++.|.+++.+ +.++..++.++..+.+++..+
T Consensus 19 kileIG~G-fG~~vA~~L~~~G~~ViaI---Di~~~aV~~a~~~~~~~v~dD 66 (134)
T PRK04148 19 KIVELGIG-FYFKVAKKLKESGFDVIVI---DINEKAVEKAKKLGLNAFVDD 66 (134)
T ss_pred EEEEEEec-CCHHHHHHHHHCCCEEEEE---ECCHHHHHHHHHhCCeEEECc
Confidence 38888888 8888888877889877665 345566777888888777665
No 400
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=39.35 E-value=2.6e+02 Score=24.29 Aligned_cols=81 Identities=14% Similarity=0.140 Sum_probs=42.6
Q ss_pred EEEEeCCCCCCC-chhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-----HHH
Q 024040 34 IAAKLEMMQPCS-SVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-----IER 107 (273)
Q Consensus 34 l~~K~E~~~ptG-S~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~-----~~~ 107 (273)
|.+..|.-.-.| .|=.|.. .+.....++|. .-.+++-..++... -.-+..|+++..+ |+... ..-
T Consensus 2 i~ir~Da~~~iG~GHv~Rcl-~LA~~l~~~g~----~v~f~~~~~~~~~~---~~i~~~g~~v~~~-~~~~~~~~d~~~~ 72 (279)
T TIGR03590 2 ILFRADASSEIGLGHVMRCL-TLARALHAQGA----EVAFACKPLPGDLI---DLLLSAGFPVYEL-PDESSRYDDALEL 72 (279)
T ss_pred EEEEecCCccccccHHHHHH-HHHHHHHHCCC----EEEEEeCCCCHHHH---HHHHHcCCeEEEe-cCCCchhhhHHHH
Confidence 455555554444 4555543 22233334553 22244444333322 2346788886664 54321 134
Q ss_pred HHHHHHcCCEEEEeCC
Q 024040 108 RIILRALGAEVYLADP 123 (273)
Q Consensus 108 ~~~~~~~Ga~v~~~~~ 123 (273)
...++..+.+++.++.
T Consensus 73 ~~~l~~~~~d~vV~D~ 88 (279)
T TIGR03590 73 INLLEEEKFDILIVDH 88 (279)
T ss_pred HHHHHhcCCCEEEEcC
Confidence 5667777889999986
No 401
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=39.30 E-value=2.3e+02 Score=23.84 Aligned_cols=30 Identities=30% Similarity=0.379 Sum_probs=25.6
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecC
Q 024040 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPS 101 (273)
Q Consensus 72 vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~ 101 (273)
+....+||-|.++|......|.+++|--..
T Consensus 4 ~~i~GtGniG~alA~~~a~ag~eV~igs~r 33 (211)
T COG2085 4 IAIIGTGNIGSALALRLAKAGHEVIIGSSR 33 (211)
T ss_pred EEEeccChHHHHHHHHHHhCCCeEEEecCC
Confidence 566788999999999999999998887544
No 402
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=39.12 E-value=1.3e+02 Score=27.59 Aligned_cols=58 Identities=22% Similarity=0.208 Sum_probs=37.6
Q ss_pred CCCCCCCeEEEeeCCChHHHHHHHHHHHcCC--eEEEEecCCCCHHHHHHHHHc--------CCEEEEeC
Q 024040 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGY--KLIIIMPSTYSIERRIILRAL--------GAEVYLAD 122 (273)
Q Consensus 63 g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~--~~~i~~p~~~~~~~~~~~~~~--------Ga~v~~~~ 122 (273)
..+++|.+.+|...+|--|..++..|+.+|. ..++++ ..++.|++..+.+ ||+...++
T Consensus 171 ~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~--~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~ 238 (410)
T cd08238 171 MGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVT--DVNDERLARAQRLFPPEAASRGIELLYVN 238 (410)
T ss_pred cCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEE--cCCHHHHHHHHHhccccccccCceEEEEC
Confidence 4567777745554578899998888998875 223333 2356777777776 66644443
No 403
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=38.92 E-value=63 Score=29.87 Aligned_cols=34 Identities=24% Similarity=0.452 Sum_probs=22.7
Q ss_pred CCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecC
Q 024040 67 PGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPS 101 (273)
Q Consensus 67 ~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~ 101 (273)
||++ |+..+.|.+|.-.+-.++++|.++.++-.+
T Consensus 79 pgdk-VLv~~nG~FG~R~~~ia~~~g~~v~~~~~~ 112 (383)
T COG0075 79 PGDK-VLVVVNGKFGERFAEIAERYGAEVVVLEVE 112 (383)
T ss_pred CCCe-EEEEeCChHHHHHHHHHHHhCCceEEEeCC
Confidence 4444 666677777777777777777777766654
No 404
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=38.79 E-value=1.5e+02 Score=26.81 Aligned_cols=55 Identities=27% Similarity=0.442 Sum_probs=38.9
Q ss_pred CCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 024040 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (273)
Q Consensus 63 g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 120 (273)
..+.+|.+.+|. ..|..|.+++..|+.+|...++.+.. +..|.+.++.+|++-+.
T Consensus 199 ~~~~~g~~VlV~-g~g~vG~~ai~lA~~~G~~~vi~~~~--~~~~~~~~~~~g~~~~v 253 (384)
T cd08265 199 GGFRPGAYVVVY-GAGPIGLAAIALAKAAGASKVIAFEI--SEERRNLAKEMGADYVF 253 (384)
T ss_pred CCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEcC--CHHHHHHHHHcCCCEEE
Confidence 456777775555 67899999999999999854444432 34578888889985443
No 405
>PRK09126 hypothetical protein; Provisional
Probab=38.78 E-value=42 Score=30.46 Aligned_cols=29 Identities=24% Similarity=0.433 Sum_probs=26.6
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEec
Q 024040 72 LIELTSGNTGIGLAFIAASRGYKLIIIMP 100 (273)
Q Consensus 72 vv~~ssGN~g~a~A~~a~~~g~~~~i~~p 100 (273)
|+...+|-.|.++|.+.++.|++++|+=.
T Consensus 6 viIvGgG~aGl~~A~~L~~~G~~v~v~E~ 34 (392)
T PRK09126 6 IVVVGAGPAGLSFARSLAGSGLKVTLIER 34 (392)
T ss_pred EEEECcCHHHHHHHHHHHhCCCcEEEEeC
Confidence 88899999999999999999999998853
No 406
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=38.69 E-value=41 Score=23.30 Aligned_cols=31 Identities=19% Similarity=0.224 Sum_probs=23.7
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecC
Q 024040 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPS 101 (273)
Q Consensus 70 ~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~ 101 (273)
..||+..+|-+..+ |..|+.+|+|+++=++.
T Consensus 32 ~Giv~~~Gg~~SH~-aIlAr~~giP~ivg~~~ 62 (80)
T PF00391_consen 32 AGIVTEEGGPTSHA-AILARELGIPAIVGVGD 62 (80)
T ss_dssp SEEEESSSSTTSHH-HHHHHHTT-EEEESTTT
T ss_pred EEEEEEcCCccchH-HHHHHHcCCCEEEeecc
Confidence 34888888777665 88899999999987653
No 407
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=38.65 E-value=1.9e+02 Score=26.13 Aligned_cols=51 Identities=18% Similarity=0.163 Sum_probs=33.8
Q ss_pred EEeeCC--ChHHHHHHHHHHHcCCeEEEEecCCC--CHHHHHH----HHHcCCEEEEeC
Q 024040 72 LIELTS--GNTGIGLAFIAASRGYKLIIIMPSTY--SIERRII----LRALGAEVYLAD 122 (273)
Q Consensus 72 vv~~ss--GN~g~a~A~~a~~~g~~~~i~~p~~~--~~~~~~~----~~~~Ga~v~~~~ 122 (273)
|+-... .|.++|++.+++++|++++++.|+.. +...+.. .+..|+++....
T Consensus 158 ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 216 (332)
T PRK04284 158 FTYVGDGRNNVANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITD 216 (332)
T ss_pred EEEecCCCcchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 444443 48889999999999999999988753 2222322 335788776654
No 408
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=38.61 E-value=2.2e+02 Score=23.92 Aligned_cols=32 Identities=16% Similarity=0.184 Sum_probs=24.1
Q ss_pred CeEEEeeCC--ChHHHHHHHHHHHcCCeEEEEec
Q 024040 69 KTVLIELTS--GNTGIGLAFIAASRGYKLIIIMP 100 (273)
Q Consensus 69 ~~~vv~~ss--GN~g~a~A~~a~~~g~~~~i~~p 100 (273)
...+|+..+ +.-|.++|....+.|.++++.-.
T Consensus 8 k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r 41 (252)
T PRK06079 8 KKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQ 41 (252)
T ss_pred CEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecC
Confidence 344666665 57999999998889999776644
No 409
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=38.60 E-value=63 Score=26.92 Aligned_cols=55 Identities=20% Similarity=0.261 Sum_probs=37.1
Q ss_pred CCCCCCCeEEEeeCCCh----HHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHHHcCCE
Q 024040 63 GLITPGKTVLIELTSGN----TGIGLAFIAASR-GYKLIIIMPSTYSIERRIILRALGAE 117 (273)
Q Consensus 63 g~~~~g~~~vv~~ssGN----~g~a~A~~a~~~-g~~~~i~~p~~~~~~~~~~~~~~Ga~ 117 (273)
|.+.+|...+|+..+|. .+..+++.+.+. |-+|..|.-+..+..-++.++.+|.+
T Consensus 14 GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d 73 (226)
T PF06745_consen 14 GGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWD 73 (226)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-
T ss_pred CCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCc
Confidence 44666777677776654 666667666666 99998888777777778888888753
No 410
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=38.44 E-value=3.3e+02 Score=26.24 Aligned_cols=104 Identities=26% Similarity=0.286 Sum_probs=64.6
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCC
Q 024040 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQF 150 (273)
Q Consensus 71 ~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 150 (273)
+|....-|+-|.++|..++.+|++++.+=|. .+..+ ...+|.+. ++ +++ ++.++. +...++-.
T Consensus 140 tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~-~~~~~---~~~~g~~~--~~---~l~-------ell~~a-DvV~l~lP 202 (525)
T TIGR01327 140 TLGVIGLGRIGSIVAKRAKAFGMKVLAYDPY-ISPER---AEQLGVEL--VD---DLD-------ELLARA-DFITVHTP 202 (525)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEECCC-CChhH---HHhcCCEE--cC---CHH-------HHHhhC-CEEEEccC
Confidence 4777888999999999999999998887664 22222 23455432 21 122 233333 44444332
Q ss_pred CCCcchHhhhhchHHHHHHhhCCCcCEEEEecCCCccHH--HHHHHHHh
Q 024040 151 ENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGGTVT--GAGRFLKE 197 (273)
Q Consensus 151 ~~~~~~~~g~~t~~~Ei~~q~~~~~d~iv~p~G~Gg~~~--Gi~~~~k~ 197 (273)
.++.+ ...+..+.++++ +++.+++-++.|+.+- .+..+++.
T Consensus 203 lt~~T----~~li~~~~l~~m--k~ga~lIN~aRG~~vde~aL~~aL~~ 245 (525)
T TIGR01327 203 LTPET----RGLIGAEELAKM--KKGVIIVNCARGGIIDEAALYEALEE 245 (525)
T ss_pred CChhh----ccCcCHHHHhcC--CCCeEEEEcCCCceeCHHHHHHHHHc
Confidence 23322 234566778887 5789999999999874 44444443
No 411
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=38.40 E-value=2.4e+02 Score=23.79 Aligned_cols=51 Identities=33% Similarity=0.475 Sum_probs=35.8
Q ss_pred CCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 024040 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAE 117 (273)
Q Consensus 63 g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~ 117 (273)
+.+.++.+.+|...+|..|.+++..++..|.+.+++.+. . +.+.++.+|++
T Consensus 140 ~~~~~~~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~---~-~~~~~~~~g~~ 190 (309)
T cd05289 140 GGLKAGQTVLIHGAAGGVGSFAVQLAKARGARVIATASA---A-NADFLRSLGAD 190 (309)
T ss_pred cCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEecc---h-hHHHHHHcCCC
Confidence 446677664454456889999999999999997766543 2 45556778863
No 412
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=38.40 E-value=1.6e+02 Score=21.73 Aligned_cols=65 Identities=15% Similarity=0.104 Sum_probs=35.2
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHH-HcCCEEEEeCCCC-ChhHHHHHHHHHHHhC
Q 024040 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILR-ALGAEVYLADPAV-GFEGFVKKGEEILNRT 141 (273)
Q Consensus 72 vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~-~~Ga~v~~~~~~~-~~~~~~~~a~~~~~~~ 141 (273)
|+-..+|++++.+|.+= -..|.+++.|.. .-.+++. .+|..-+..+... +.++..+.+.+.+.+.
T Consensus 21 vv~T~sG~ta~~isk~R--P~~pIiavt~~~---~~~r~l~l~~GV~p~~~~~~~~~~~~~~~~a~~~~~~~ 87 (117)
T PF02887_consen 21 VVFTESGRTARLISKYR--PKVPIIAVTPNE---SVARQLSLYWGVYPVLIEEFDKDTEELIAEALEYAKER 87 (117)
T ss_dssp EEE-SSSHHHHHHHHT---TSSEEEEEESSH---HHHHHGGGSTTEEEEECSSHSHSHHHHHHHHHHHHHHT
T ss_pred EEECCCchHHHHHHhhC--CCCeEEEEcCcH---HHHhhhhcccceEEEEeccccccHHHHHHHHHHHHHHc
Confidence 33445687777766532 346666666642 2233332 3566666665543 4556666666666554
No 413
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=38.34 E-value=2e+02 Score=26.09 Aligned_cols=51 Identities=24% Similarity=0.384 Sum_probs=34.7
Q ss_pred EEeeCC-ChHHHHHHHHHHHcCCeEEEEecCCC--CHHHHHHHH----HcCCEEEEeC
Q 024040 72 LIELTS-GNTGIGLAFIAASRGYKLIIIMPSTY--SIERRIILR----ALGAEVYLAD 122 (273)
Q Consensus 72 vv~~ss-GN~g~a~A~~a~~~g~~~~i~~p~~~--~~~~~~~~~----~~Ga~v~~~~ 122 (273)
|+-... .|.+.+++..++++|++++++.|+.. +...+..++ ..|+++....
T Consensus 157 v~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 214 (338)
T PRK02255 157 VVFVGDATQVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTD 214 (338)
T ss_pred EEEECCCchHHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEEc
Confidence 443333 68889999999999999999998853 333333333 3588877654
No 414
>PRK09275 aspartate aminotransferase; Provisional
Probab=38.28 E-value=3.8e+02 Score=25.96 Aligned_cols=115 Identities=15% Similarity=0.050 Sum_probs=53.2
Q ss_pred CCCCCCchhhHHHHHHHHHHHHc-CCCCC-CCeEEEeeCCChHHHHHHHHH----HHcCCeEEEEecCCCCHHHHHH--H
Q 024040 40 MMQPCSSVKDRIAYSMIKDAEDK-GLITP-GKTVLIELTSGNTGIGLAFIA----ASRGYKLIIIMPSTYSIERRII--L 111 (273)
Q Consensus 40 ~~~ptGS~K~R~a~~~~~~a~~~-g~~~~-g~~~vv~~ssGN~g~a~A~~a----~~~g~~~~i~~p~~~~~~~~~~--~ 111 (273)
+-.|.|-...|-+...-....+. +...+ +...|+...++..++..+..+ ..++---.|++|.-+-..-... +
T Consensus 130 Y~~~~g~~~lreaia~~~~~~~~~~~~~~~~~~~I~vT~Ga~~al~~~~~aL~~~~ll~pGD~Vlv~~P~y~~Y~~~~~l 209 (527)
T PRK09275 130 YPVPDRMLKHTEKIVKDYLRQEMCGGRPPKGEFDLFAVEGGTAAMCYIFDSLKENGLLKAGDKIALMTPIFTPYLEIPEL 209 (527)
T ss_pred CCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHHHHhhhhcCCCCCEEEEeCCChHHHHHHHHH
Confidence 34457777888655442222221 22112 122488788888888877665 1233223344443222222333 3
Q ss_pred HHcCCEEEEeCC--CCChhHHHHHHHHHHHhCCCeEeeCCCCCCc
Q 024040 112 RALGAEVYLADP--AVGFEGFVKKGEEILNRTPNGYILGQFENPA 154 (273)
Q Consensus 112 ~~~Ga~v~~~~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 154 (273)
..+|++++.++. ..+|+--.+...++...+...+++..-+||.
T Consensus 210 ~g~~~~~v~v~~~~~~~f~~d~~~l~~~~~~~tkai~l~nP~NPT 254 (527)
T PRK09275 210 PRYDLEVVHINADEENEWQYPDSELEKLRDPSIKALFLVNPSNPP 254 (527)
T ss_pred cCCCeEEEEeecCcccCCCCCHHHHHhhcCCCCCEEEEeCCcCCc
Confidence 345677776642 2233322222333333333566764333443
No 415
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=38.21 E-value=2.4e+02 Score=25.53 Aligned_cols=56 Identities=27% Similarity=0.288 Sum_probs=38.2
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHc-CCEEE
Q 024040 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRAL-GAEVY 119 (273)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~-Ga~v~ 119 (273)
+...+.++.+ |+...+|-.|.+++..|+.+|...++++.. ++.+.+.++.+ |++++
T Consensus 178 ~~~~~~~g~~-VlV~g~G~vG~~~~~la~~~g~~~vi~~~~--~~~~~~~~~~~~~~~vi 234 (386)
T cd08283 178 ELAEVKPGDT-VAVWGCGPVGLFAARSAKLLGAERVIAIDR--VPERLEMARSHLGAETI 234 (386)
T ss_pred hhccCCCCCE-EEEECCCHHHHHHHHHHHHcCCCEEEEEcC--CHHHHHHHHHcCCcEEE
Confidence 3455667766 444466878999999999999864444432 35778888887 66543
No 416
>PRK06753 hypothetical protein; Provisional
Probab=38.12 E-value=50 Score=29.71 Aligned_cols=29 Identities=14% Similarity=0.253 Sum_probs=26.4
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEec
Q 024040 72 LIELTSGNTGIGLAFIAASRGYKLIIIMP 100 (273)
Q Consensus 72 vv~~ssGN~g~a~A~~a~~~g~~~~i~~p 100 (273)
|+...+|-.|.++|...++.|++++|+=.
T Consensus 3 V~IvGgG~aGl~~A~~L~~~g~~v~v~E~ 31 (373)
T PRK06753 3 IAIIGAGIGGLTAAALLQEQGHEVKVFEK 31 (373)
T ss_pred EEEECCCHHHHHHHHHHHhCCCcEEEEec
Confidence 78889999999999999999999988854
No 417
>PRK05973 replicative DNA helicase; Provisional
Probab=38.07 E-value=1.4e+02 Score=25.50 Aligned_cols=54 Identities=31% Similarity=0.398 Sum_probs=38.9
Q ss_pred CCCCCCCeEEEeeCC--Ch--HHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCC
Q 024040 63 GLITPGKTVLIELTS--GN--TGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGA 116 (273)
Q Consensus 63 g~~~~g~~~vv~~ss--GN--~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga 116 (273)
|.+.+|...+|.+.+ |- .+..+|+.+.+.|-++..|.-+..+..-.+.+..+|.
T Consensus 59 GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~~i~~R~~s~g~ 116 (237)
T PRK05973 59 SQLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQDVRDRLRALGA 116 (237)
T ss_pred CCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHcCC
Confidence 457788776777744 44 4445566666679999988888777777888888875
No 418
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=37.98 E-value=1.3e+02 Score=26.74 Aligned_cols=45 Identities=20% Similarity=0.190 Sum_probs=29.6
Q ss_pred ChHHHHHHHHHHHcCCeEEEEecCCCC--HHHHH----HHHHcCCEEEEeC
Q 024040 78 GNTGIGLAFIAASRGYKLIIIMPSTYS--IERRI----ILRALGAEVYLAD 122 (273)
Q Consensus 78 GN~g~a~A~~a~~~g~~~~i~~p~~~~--~~~~~----~~~~~Ga~v~~~~ 122 (273)
-|.+.|++.+++++|++++++.|+... ...++ ..+..|+++..++
T Consensus 157 ~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~ 207 (302)
T PRK14805 157 NNVTHSLMYGAAILGATMTVICPPGHFPDGQIVAEAQELAAKSGGKLVLTS 207 (302)
T ss_pred CccHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCEEEEEc
Confidence 466788888888888888888887532 22221 2345677776654
No 419
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=37.85 E-value=46 Score=30.52 Aligned_cols=30 Identities=23% Similarity=0.434 Sum_probs=24.6
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecC
Q 024040 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPS 101 (273)
Q Consensus 72 vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~ 101 (273)
||...+|..|.+.|..|+..|.+++++-..
T Consensus 2 VvVIG~G~AGl~AA~~Aae~G~~V~lvek~ 31 (417)
T PF00890_consen 2 VVVIGGGLAGLAAAIEAAEAGAKVLLVEKG 31 (417)
T ss_dssp EEEE-SSHHHHHHHHHHHHTTT-EEEEESS
T ss_pred EEEECCCHHHHHHHHHHhhhcCeEEEEEee
Confidence 777889999999999999999998887643
No 420
>PRK07392 threonine-phosphate decarboxylase; Validated
Probab=37.71 E-value=2.8e+02 Score=24.76 Aligned_cols=50 Identities=16% Similarity=0.038 Sum_probs=32.6
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 024040 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (273)
Q Consensus 72 vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 123 (273)
|+..+++..++.++..+-.-| + .|+++.-+-..-...++.+|++++.++-
T Consensus 77 I~it~G~~~~i~~~~~~l~~g-~-~vlv~~P~y~~~~~~~~~~g~~~~~v~~ 126 (360)
T PRK07392 77 ILPGNGAAELLTWAGRELAQL-R-AVYLITPAFGDYRRALRAFGATVKELPL 126 (360)
T ss_pred EEECCCHHHHHHHHHHHhCCC-C-eEEEECCCcHHHHHHHHHcCCeEEEEec
Confidence 777777778877665542223 3 4455543444556777889999988864
No 421
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=37.67 E-value=1e+02 Score=27.77 Aligned_cols=55 Identities=27% Similarity=0.390 Sum_probs=34.1
Q ss_pred EEEeeCCChHHHHHHHHHHHc----CCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhC
Q 024040 71 VLIELTSGNTGIGLAFIAASR----GYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRT 141 (273)
Q Consensus 71 ~vv~~ssGN~g~a~A~~a~~~----g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~ 141 (273)
-+++..+=|++-|+|++|... |=...+|+|.+ |.+.....|.++.+.|.+++++.
T Consensus 80 illEP~gRnTApAIA~aa~~~~~~~~d~~~lVlpsD----------------H~I~d~~af~~av~~A~~~A~~g 138 (333)
T COG0836 80 IILEPEGRNTAPAIALAALSATAEGGDALVLVLPSD----------------HVIADEEAFLNAVKKAEKAAEEG 138 (333)
T ss_pred eEeccCCCCcHHHHHHHHHHHHHhCCCcEEEEecCc----------------ceeccHHHHHHHHHHHHHHHHcC
Confidence 477788888888877776543 32355666653 12222223667788888888774
No 422
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=37.61 E-value=2.4e+02 Score=25.39 Aligned_cols=100 Identities=15% Similarity=0.151 Sum_probs=59.2
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCC
Q 024040 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQF 150 (273)
Q Consensus 71 ~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 150 (273)
+|..-..|+.|.++|..++.+|.+++++-+... ..... +..+ .+. .++.++. +...++-
T Consensus 148 ~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~--~~~~~-------~~~~---~~l-------~ell~~a-DiVil~l- 206 (330)
T PRK12480 148 TVAIIGTGRIGAATAKIYAGFGATITAYDAYPN--KDLDF-------LTYK---DSV-------KEAIKDA-DIISLHV- 206 (330)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEeCChh--Hhhhh-------hhcc---CCH-------HHHHhcC-CEEEEeC-
Confidence 377778999999999999999999988865421 11100 0011 111 2223333 4444322
Q ss_pred CCCcchHhhhhchHHHHHHhhCCCcCEEEEecCCCccHH--HHHHHHH
Q 024040 151 ENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGGTVT--GAGRFLK 196 (273)
Q Consensus 151 ~~~~~~~~g~~t~~~Ei~~q~~~~~d~iv~p~G~Gg~~~--Gi~~~~k 196 (273)
|... .-...+..++++++ +++.+++-+|-|+.+- .+..+++
T Consensus 207 --P~t~-~t~~li~~~~l~~m--k~gavlIN~aRG~~vd~~aL~~aL~ 249 (330)
T PRK12480 207 --PANK-ESYHLFDKAMFDHV--KKGAILVNAARGAVINTPDLIAAVN 249 (330)
T ss_pred --CCcH-HHHHHHhHHHHhcC--CCCcEEEEcCCccccCHHHHHHHHH
Confidence 2222 12344567888887 4788999999999873 3344444
No 423
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=37.57 E-value=2.1e+02 Score=22.81 Aligned_cols=31 Identities=35% Similarity=0.504 Sum_probs=19.1
Q ss_pred CeEEEeeCCChHH---HHHHHHHHHcCCeEEEEe
Q 024040 69 KTVLIELTSGNTG---IGLAFIAASRGYKLIIIM 99 (273)
Q Consensus 69 ~~~vv~~ssGN~g---~a~A~~a~~~g~~~~i~~ 99 (273)
.+.+|-++.||.| .++|..-++.|+++++++
T Consensus 26 ~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~ 59 (169)
T PF03853_consen 26 PRVLILCGPGNNGGDGLVAARHLANRGYNVTVYL 59 (169)
T ss_dssp -EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CeEEEEECCCCChHHHHHHHHHHHHCCCeEEEEE
Confidence 4556677778766 444555556788888844
No 424
>PRK07985 oxidoreductase; Provisional
Probab=37.42 E-value=2.8e+02 Score=24.09 Aligned_cols=54 Identities=17% Similarity=0.178 Sum_probs=34.9
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCC-C--HHHHHHHHHcCCEEEEeC
Q 024040 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTY-S--IERRIILRALGAEVYLAD 122 (273)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~-~--~~~~~~~~~~Ga~v~~~~ 122 (273)
.+.+|+..+|.-|.++|......|.++++.-.... . ......++..|.+++.+.
T Consensus 50 k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (294)
T PRK07985 50 RKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLP 106 (294)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEE
Confidence 35588888888999999998899999876543211 1 112223445677765544
No 425
>PLN02477 glutamate dehydrogenase
Probab=37.31 E-value=2.7e+02 Score=25.99 Aligned_cols=51 Identities=18% Similarity=0.160 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHH-cCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEec
Q 024040 49 DRIAYSMIKDAED-KGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMP 100 (273)
Q Consensus 49 ~R~a~~~~~~a~~-~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p 100 (273)
-||..+.+..+.+ .|.-..| .+|+.-.-||-|..+|......|.+++.+..
T Consensus 186 g~Gv~~~~~~~~~~~g~~l~g-~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD 237 (410)
T PLN02477 186 GRGVVFATEALLAEHGKSIAG-QTFVIQGFGNVGSWAAQLIHEKGGKIVAVSD 237 (410)
T ss_pred hHHHHHHHHHHHHHcCCCccC-CEEEEECCCHHHHHHHHHHHHcCCEEEEEEC
Confidence 4677777777664 3332233 4488888999999999999999988776654
No 426
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=37.29 E-value=3e+02 Score=24.54 Aligned_cols=53 Identities=26% Similarity=0.331 Sum_probs=36.1
Q ss_pred cCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 024040 62 KGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAE 117 (273)
Q Consensus 62 ~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~ 117 (273)
...+.++.+.+|. ..|..|.+++..|+.+|.+.++++.. +..+...++.+|++
T Consensus 177 ~~~~~~g~~vLI~-g~g~vG~a~i~lak~~G~~~Vi~~~~--~~~~~~~~~~~g~~ 229 (363)
T cd08279 177 TARVRPGDTVAVI-GCGGVGLNAIQGARIAGASRIIAVDP--VPEKLELARRFGAT 229 (363)
T ss_pred ccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCcEEEEcC--CHHHHHHHHHhCCe
Confidence 3446677775555 56889999999999999873444322 44566677778874
No 427
>PRK12414 putative aminotransferase; Provisional
Probab=37.18 E-value=3.2e+02 Score=24.75 Aligned_cols=50 Identities=20% Similarity=0.116 Sum_probs=28.5
Q ss_pred EEeeCCChHHHHHHHHHH-HcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 024040 72 LIELTSGNTGIGLAFIAA-SRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (273)
Q Consensus 72 vv~~ssGN~g~a~A~~a~-~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 123 (273)
++..++|..++.++..+- .-|=+ |+++.-.-..-...++.+|++++.++-
T Consensus 93 i~it~g~~~al~~~~~~l~~~gd~--Vlv~~p~y~~~~~~~~~~g~~~~~v~~ 143 (384)
T PRK12414 93 VTVIASASEGLYAAISALVHPGDE--VIYFEPSFDSYAPIVRLQGATPVAIKL 143 (384)
T ss_pred EEEECChHHHHHHHHHHhcCCCCE--EEEeCCCccchHHHHHHcCCEEEEEec
Confidence 676777777776665433 12323 334432222334456668999988864
No 428
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=37.16 E-value=1.7e+02 Score=27.16 Aligned_cols=56 Identities=30% Similarity=0.414 Sum_probs=38.3
Q ss_pred CCchhhHHHHHHHHHHHHcCCCCCCCeEEEee--CCChHHHHHHHHHHHcC--CeEEEEecC
Q 024040 44 CSSVKDRIAYSMIKDAEDKGLITPGKTVLIEL--TSGNTGIGLAFIAASRG--YKLIIIMPS 101 (273)
Q Consensus 44 tGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~--ssGN~g~a~A~~a~~~g--~~~~i~~p~ 101 (273)
-|-.|.|-|..++.+..++|++. |..-+++. ++|-+++|+|. |+.+| +|++.....
T Consensus 27 VGQ~~AReAagiiv~mIk~~K~a-Gr~iLiaGppGtGKTAlA~~i-a~eLG~~~PF~~isgS 86 (398)
T PF06068_consen 27 VGQEKAREAAGIIVDMIKEGKIA-GRAILIAGPPGTGKTALAMAI-AKELGEDVPFVSISGS 86 (398)
T ss_dssp ES-HHHHHHHHHHHHHHHTT--T-T-EEEEEE-TTSSHHHHHHHH-HHHCTTTS-EEEEEGG
T ss_pred cChHHHHHHHHHHHHHHhccccc-CcEEEEeCCCCCCchHHHHHH-HHHhCCCCCeeEcccc
Confidence 57889999999999999988754 33323333 66888888776 67777 788877653
No 429
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=37.15 E-value=1.5e+02 Score=20.85 Aligned_cols=54 Identities=15% Similarity=0.194 Sum_probs=37.4
Q ss_pred EEEeeCCChHHHHH--HHHHHHcCCeEEEEecCCCCHHHHHHHHHc-CCEEEEeCCCC
Q 024040 71 VLIELTSGNTGIGL--AFIAASRGYKLIIIMPSTYSIERRIILRAL-GAEVYLADPAV 125 (273)
Q Consensus 71 ~vv~~ssGN~g~a~--A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~-Ga~v~~~~~~~ 125 (273)
.++.+++-|+.-++ +..|.+.+.|..++- ...+......++.+ .-+|+.+++..
T Consensus 27 ~v~ia~g~~~~Dalsa~~~a~~~~~PIll~~-~~l~~~~~~~l~~~~~~~v~iiGg~~ 83 (92)
T PF04122_consen 27 KVYIASGDNFADALSASPLAAKNNAPILLVN-NSLPSSVKAFLKSLNIKKVYIIGGEG 83 (92)
T ss_pred EEEEEeCcchhhhhhhHHHHHhcCCeEEEEC-CCCCHHHHHHHHHcCCCEEEEECCCC
Confidence 37777776655444 445677788877665 77787778888877 56778887653
No 430
>PLN02494 adenosylhomocysteinase
Probab=37.14 E-value=1.5e+02 Score=28.28 Aligned_cols=96 Identities=17% Similarity=0.211 Sum_probs=57.4
Q ss_pred CCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCC
Q 024040 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTP 142 (273)
Q Consensus 63 g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~ 142 (273)
+....|.+ ++....|+-|+++|..++.+|.+++++=. ++.+.......|.++. + .++ ..++.
T Consensus 249 ~i~LaGKt-VvViGyG~IGr~vA~~aka~Ga~VIV~e~---dp~r~~eA~~~G~~vv--~----leE-------al~~A- 310 (477)
T PLN02494 249 DVMIAGKV-AVICGYGDVGKGCAAAMKAAGARVIVTEI---DPICALQALMEGYQVL--T----LED-------VVSEA- 310 (477)
T ss_pred CCccCCCE-EEEECCCHHHHHHHHHHHHCCCEEEEEeC---CchhhHHHHhcCCeec--c----HHH-------HHhhC-
Confidence 33344555 89999999999999999999998555422 2334334455677643 1 222 12222
Q ss_pred CeEeeCCCCCCcchHhhhhchHHHHHHhhCCCcCEEEEecCCCc
Q 024040 143 NGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGG 186 (273)
Q Consensus 143 ~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~iv~p~G~Gg 186 (273)
+.++... .+ ...+..+.++++ ++..+++-+|..+
T Consensus 311 DVVI~tT-Gt-------~~vI~~e~L~~M--K~GAiLiNvGr~~ 344 (477)
T PLN02494 311 DIFVTTT-GN-------KDIIMVDHMRKM--KNNAIVCNIGHFD 344 (477)
T ss_pred CEEEECC-CC-------ccchHHHHHhcC--CCCCEEEEcCCCC
Confidence 4443311 11 123445667777 4678999988854
No 431
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=36.88 E-value=1.7e+02 Score=28.99 Aligned_cols=51 Identities=22% Similarity=0.290 Sum_probs=39.8
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecCCC--------------C----HHHHHHHHHcCCEEEEe
Q 024040 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTY--------------S----IERRIILRALGAEVYLA 121 (273)
Q Consensus 71 ~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~--------------~----~~~~~~~~~~Ga~v~~~ 121 (273)
.|+...+|-.|++.|+..++.|.++++|-.... + ...++.++.+|.++..-
T Consensus 195 ~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~ 263 (652)
T PRK12814 195 KVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFN 263 (652)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeC
Confidence 499999999999999999999999999864321 1 12366778899988653
No 432
>PRK06701 short chain dehydrogenase; Provisional
Probab=36.82 E-value=2.8e+02 Score=23.99 Aligned_cols=55 Identities=20% Similarity=0.217 Sum_probs=37.6
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeCC
Q 024040 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS--IERRIILRALGAEVYLADP 123 (273)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~--~~~~~~~~~~Ga~v~~~~~ 123 (273)
.+.+|+..+|--|.++|....+.|.+++++...... ......++..|.++..+..
T Consensus 47 k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (290)
T PRK06701 47 KVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPG 103 (290)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEc
Confidence 345788888889999999988899998776554222 2234455666777766543
No 433
>PRK08017 oxidoreductase; Provisional
Probab=36.67 E-value=2.5e+02 Score=23.34 Aligned_cols=51 Identities=25% Similarity=0.321 Sum_probs=37.4
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 024040 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (273)
Q Consensus 70 ~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 123 (273)
+.+|+..+|.-|.++|....+.|.+++++... ..+++.++..|++.+.++-
T Consensus 4 ~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~---~~~~~~~~~~~~~~~~~D~ 54 (256)
T PRK08017 4 SVLITGCSSGIGLEAALELKRRGYRVLAACRK---PDDVARMNSLGFTGILLDL 54 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCC---HHHhHHHHhCCCeEEEeec
Confidence 34778888999999999988889987665442 3555666667887777663
No 434
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=36.64 E-value=1.3e+02 Score=27.14 Aligned_cols=51 Identities=22% Similarity=0.298 Sum_probs=32.7
Q ss_pred EEeeCCC--hHHHHHHHHHHHcCCeEEEEecCCCC--HHHHH----HHHHcCCEEEEeC
Q 024040 72 LIELTSG--NTGIGLAFIAASRGYKLIIIMPSTYS--IERRI----ILRALGAEVYLAD 122 (273)
Q Consensus 72 vv~~ssG--N~g~a~A~~a~~~g~~~~i~~p~~~~--~~~~~----~~~~~Ga~v~~~~ 122 (273)
|.-...+ |.+.|++.+++++|++++++.|+... ...+. ..+..|+++....
T Consensus 159 ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~ 217 (334)
T PRK01713 159 YVYIGDARNNMGNSLLLIGAKLGMDVRICAPKALLPEASLVEMCEKFAKESGARITVTD 217 (334)
T ss_pred EEEECCCccCHHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 4444443 67888888889999999988887532 22221 2244688876654
No 435
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=36.63 E-value=1.6e+02 Score=21.24 Aligned_cols=48 Identities=27% Similarity=0.322 Sum_probs=31.8
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeC
Q 024040 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLAD 122 (273)
Q Consensus 72 vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~ 122 (273)
|+.+..|+.|..++-.-+..+.+++++-. .+.+.+.++..|.+++.-+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~---d~~~~~~~~~~~~~~i~gd 48 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDR---DPERVEELREEGVEVIYGD 48 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEES---SHHHHHHHHHTTSEEEES-
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEEC---CcHHHHHHHhccccccccc
Confidence 35566788888888888886666666643 4566777777776665544
No 436
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=36.60 E-value=1.7e+02 Score=27.02 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=13.3
Q ss_pred HHHHHHhhCCCcCEEEEecCCCccH
Q 024040 164 GPEIWNDSGGKVDAFIAGIGTGGTV 188 (273)
Q Consensus 164 ~~Ei~~q~~~~~d~iv~p~G~Gg~~ 188 (273)
+.+++++. ++| +|+++|||+.+
T Consensus 98 ~~~~~r~~--~~D-~IiavGGGS~i 119 (395)
T PRK15454 98 AVAQLRES--GCD-GVIAFGGGSVL 119 (395)
T ss_pred HHHHHHhc--CcC-EEEEeCChHHH
Confidence 34444443 466 56788877754
No 437
>PRK08636 aspartate aminotransferase; Provisional
Probab=36.49 E-value=3.3e+02 Score=24.80 Aligned_cols=77 Identities=13% Similarity=0.044 Sum_probs=42.8
Q ss_pred CCCchhhHHHHHHHHHHHHcCC-CCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEe
Q 024040 43 PCSSVKDRIAYSMIKDAEDKGL-ITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLA 121 (273)
Q Consensus 43 ptGS~K~R~a~~~~~~a~~~g~-~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~ 121 (273)
+.|..-.|.+..-..... .|. ..+.. .|+..+++++|+.++..+- +.-.-.|+++.-+-..-...++..|++++.+
T Consensus 70 ~~G~~~lR~~ia~~l~~~-~~~~~~~~~-~I~it~G~~~al~~~~~~l-~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v 146 (403)
T PRK08636 70 SKGIYKLRLAICNWYKRK-YNVDLDPET-EVVATMGSKEGYVHLVQAI-TNPGDVAIVPDPAYPIHSQAFILAGGNVHKM 146 (403)
T ss_pred CCCCHHHHHHHHHHHHHH-hCCCCCCCC-eEEECCChHHHHHHHHHHh-CCCCCEEEEcCCCCcchHHHHHhcCCEEEEE
Confidence 457766775444332222 232 23321 3777778888877666543 2323345555433334455677899999887
Q ss_pred C
Q 024040 122 D 122 (273)
Q Consensus 122 ~ 122 (273)
+
T Consensus 147 ~ 147 (403)
T PRK08636 147 P 147 (403)
T ss_pred e
Confidence 5
No 438
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=36.46 E-value=2.6e+02 Score=23.51 Aligned_cols=51 Identities=18% Similarity=0.150 Sum_probs=33.9
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH-cCCEEEEeC
Q 024040 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRA-LGAEVYLAD 122 (273)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~-~Ga~v~~~~ 122 (273)
...+|+..+|.-|.++|....+.|.+++++-.. ..+.+.+.. +|.++..+.
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~---~~~~~~l~~~~~~~~~~~~ 57 (262)
T TIGR03325 6 EVVLVTGGASGLGRAIVDRFVAEGARVAVLDKS---AAGLQELEAAHGDAVVGVE 57 (262)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHhhcCCceEEEE
Confidence 455888888889999999988999987765432 234444433 455565443
No 439
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=36.34 E-value=3e+02 Score=24.13 Aligned_cols=54 Identities=31% Similarity=0.434 Sum_probs=36.1
Q ss_pred cCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 024040 62 KGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEV 118 (273)
Q Consensus 62 ~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v 118 (273)
...+.++...+|. .+|-.|.+++..|+.+|.+.+++.. .+..+...++.+|++-
T Consensus 160 ~~~~~~g~~VlV~-g~g~vg~~~~~la~~~g~~~v~~~~--~s~~~~~~~~~~g~~~ 213 (343)
T cd08235 160 KAGIKPGDTVLVI-GAGPIGLLHAMLAKASGARKVIVSD--LNEFRLEFAKKLGADY 213 (343)
T ss_pred hcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEEC--CCHHHHHHHHHhCCcE
Confidence 3456777775555 4677888888899999999433332 2445666667777743
No 440
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=35.98 E-value=2e+02 Score=26.04 Aligned_cols=51 Identities=20% Similarity=0.265 Sum_probs=34.3
Q ss_pred EEeeCC--ChHHHHHHHHHHHcCCeEEEEecCCCC--HHHHH----HHHHcCCEEEEeC
Q 024040 72 LIELTS--GNTGIGLAFIAASRGYKLIIIMPSTYS--IERRI----ILRALGAEVYLAD 122 (273)
Q Consensus 72 vv~~ss--GN~g~a~A~~a~~~g~~~~i~~p~~~~--~~~~~----~~~~~Ga~v~~~~ 122 (273)
|.-... -|.+.+++..++++|++++++.|+... ...++ ..+..|+++....
T Consensus 159 va~vGD~~~~v~~S~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 217 (334)
T PRK12562 159 LVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTE 217 (334)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEEEEc
Confidence 444444 378999999999999999999998632 22222 2344688776654
No 441
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=35.79 E-value=1.7e+02 Score=26.33 Aligned_cols=33 Identities=18% Similarity=0.368 Sum_probs=17.2
Q ss_pred CcCEEEEecCCCccHHHHHHHHHhhCCCcEEEEEec
Q 024040 174 KVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEP 209 (273)
Q Consensus 174 ~~d~iv~p~G~Gg~~~Gi~~~~k~~~~~~~vigVe~ 209 (273)
++| +|+++|||.. .=+++++.... ..++|.|-+
T Consensus 77 ~~d-~IIavGGGs~-~D~aK~ia~~~-~~p~i~VPT 109 (349)
T cd08550 77 EAD-VIIGVGGGKT-LDTAKAVADRL-DKPIVIVPT 109 (349)
T ss_pred CCC-EEEEecCcHH-HHHHHHHHHHc-CCCEEEeCC
Confidence 355 5677776553 34555554322 245566544
No 442
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=35.77 E-value=3e+02 Score=24.54 Aligned_cols=51 Identities=27% Similarity=0.319 Sum_probs=33.7
Q ss_pred CCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 024040 64 LITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAE 117 (273)
Q Consensus 64 ~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~ 117 (273)
.+.++.+.+|. .+|..|.+++..|+.+|.+.++++.. +..+.+.++.+|++
T Consensus 184 ~~~~g~~VlI~-g~g~vG~~~~~lak~~G~~~vi~~~~--s~~~~~~~~~~g~~ 234 (367)
T cd08263 184 DVRPGETVAVI-GVGGVGSSAIQLAKAFGASPIIAVDV--RDEKLAKAKELGAT 234 (367)
T ss_pred cCCCCCEEEEE-CCcHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHhCCc
Confidence 34566664555 57888899888999999884444422 34566666777764
No 443
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=35.61 E-value=53 Score=29.87 Aligned_cols=29 Identities=21% Similarity=0.250 Sum_probs=26.9
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEec
Q 024040 72 LIELTSGNTGIGLAFIAASRGYKLIIIMP 100 (273)
Q Consensus 72 vv~~ssGN~g~a~A~~a~~~g~~~~i~~p 100 (273)
|+...+|-.|.++|.+.++.|++++||=.
T Consensus 6 v~IvGgG~aGl~~A~~L~~~G~~v~l~E~ 34 (384)
T PRK08849 6 IAVVGGGMVGAATALGFAKQGRSVAVIEG 34 (384)
T ss_pred EEEECcCHHHHHHHHHHHhCCCcEEEEcC
Confidence 88899999999999999999999999863
No 444
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=35.59 E-value=3.3e+02 Score=24.49 Aligned_cols=51 Identities=22% Similarity=0.148 Sum_probs=28.9
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 024040 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (273)
Q Consensus 72 vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 123 (273)
|+..+++..++.++..+- .+-.-.|++|.-+-..-....+.+|++++.++-
T Consensus 94 vi~t~G~~~~l~~~~~~~-~~~gd~vlv~~P~y~~~~~~~~~~G~~v~~v~~ 144 (383)
T TIGR03540 94 VLSLIGSKEGIAHIPLAF-VNPGDIVLVPDPGYPVYRIGTLFAGGEPYEMPL 144 (383)
T ss_pred EEECCCcHHHHHHHHHHh-CCCCCEEEEeCCCCcchHHHHHhcCCEEEEEec
Confidence 666666677766665442 222233444432222334456789999988764
No 445
>PRK09072 short chain dehydrogenase; Provisional
Probab=35.58 E-value=2.7e+02 Score=23.40 Aligned_cols=33 Identities=33% Similarity=0.433 Sum_probs=26.6
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecC
Q 024040 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPS 101 (273)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~ 101 (273)
.+.+|+.++|-.|.++|......|.+++++...
T Consensus 6 ~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~ 38 (263)
T PRK09072 6 KRVLLTGASGGIGQALAEALAAAGARLLLVGRN 38 (263)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECC
Confidence 355788888889999999988899987777643
No 446
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=35.57 E-value=3.1e+02 Score=24.46 Aligned_cols=103 Identities=18% Similarity=0.124 Sum_probs=61.3
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCC
Q 024040 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQF 150 (273)
Q Consensus 71 ~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 150 (273)
+|..-.-||-|..+|..++.+|++++.+-+..... -+.+. +.. .+ ...++.++. +...++-
T Consensus 138 tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~--------~~~~~--~~~---~~----~l~e~l~~a-Dvvv~~l- 198 (312)
T PRK15469 138 TIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSW--------PGVQS--FAG---RE----ELSAFLSQT-RVLINLL- 198 (312)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCC--------CCcee--ecc---cc----cHHHHHhcC-CEEEECC-
Confidence 47778999999999999999999998876532110 02221 111 11 122333333 4443322
Q ss_pred CCCcchHhhhhchHHHHHHhhCCCcCEEEEecCCCccHH--HHHHHHHh
Q 024040 151 ENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGGTVT--GAGRFLKE 197 (273)
Q Consensus 151 ~~~~~~~~g~~t~~~Ei~~q~~~~~d~iv~p~G~Gg~~~--Gi~~~~k~ 197 (273)
|... .-...+..+.++++ +++.+++-+|-|+.+- .+..++++
T Consensus 199 --Plt~-~T~~li~~~~l~~m--k~ga~lIN~aRG~vVde~aL~~aL~~ 242 (312)
T PRK15469 199 --PNTP-ETVGIINQQLLEQL--PDGAYLLNLARGVHVVEDDLLAALDS 242 (312)
T ss_pred --CCCH-HHHHHhHHHHHhcC--CCCcEEEECCCccccCHHHHHHHHhc
Confidence 2222 23345667888888 4689999999999864 34444443
No 447
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=35.44 E-value=2.6e+02 Score=23.15 Aligned_cols=53 Identities=17% Similarity=0.218 Sum_probs=34.7
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHH-HHHHHHcCCEEEEeC
Q 024040 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIER-RIILRALGAEVYLAD 122 (273)
Q Consensus 70 ~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~-~~~~~~~Ga~v~~~~ 122 (273)
+.+|+..+|-.|.+++....+.|.+++++........+ ...++..+.++..+.
T Consensus 3 ~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 56 (255)
T TIGR01963 3 TALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAGGSVIYLV 56 (255)
T ss_pred EEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEE
Confidence 34788888999999999888889987777654211111 223344566766554
No 448
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=35.25 E-value=1.5e+02 Score=20.57 Aligned_cols=47 Identities=26% Similarity=0.299 Sum_probs=32.7
Q ss_pred EEeeCCChHHHHHHHHHHHcC---CeEEEEecCCCCHHHHHHH-HHcCCEEEE
Q 024040 72 LIELTSGNTGIGLAFIAASRG---YKLIIIMPSTYSIERRIIL-RALGAEVYL 120 (273)
Q Consensus 72 vv~~ssGN~g~a~A~~a~~~g---~~~~i~~p~~~~~~~~~~~-~~~Ga~v~~ 120 (273)
|..-.+||.|.+++......| .++.++... ++++.+.+ +.++.++..
T Consensus 2 I~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r--~~~~~~~~~~~~~~~~~~ 52 (96)
T PF03807_consen 2 IGIIGAGNMGSALARGLLASGIKPHEVIIVSSR--SPEKAAELAKEYGVQATA 52 (96)
T ss_dssp EEEESTSHHHHHHHHHHHHTTS-GGEEEEEEES--SHHHHHHHHHHCTTEEES
T ss_pred EEEECCCHHHHHHHHHHHHCCCCceeEEeeccC--cHHHHHHHHHhhcccccc
Confidence 334488999999999999999 677765433 34555554 667766654
No 449
>PLN02928 oxidoreductase family protein
Probab=35.24 E-value=3.4e+02 Score=24.61 Aligned_cols=115 Identities=21% Similarity=0.129 Sum_probs=63.5
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE-eCCCCChhHHHHHHHHHHHhCCCeEeeC
Q 024040 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL-ADPAVGFEGFVKKGEEILNRTPNGYILG 148 (273)
Q Consensus 70 ~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 148 (273)
+++....-|+-|+.+|..++.+|++++++-|.. +......+...-..+.. +.....+ ....++.++. +...++
T Consensus 160 ktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~L~ell~~a-DiVvl~ 233 (347)
T PLN02928 160 KTVFILGYGAIGIELAKRLRPFGVKLLATRRSW-TSEPEDGLLIPNGDVDDLVDEKGGH----EDIYEFAGEA-DIVVLC 233 (347)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCC-ChhhhhhhccccccccccccccCcc----cCHHHHHhhC-CEEEEC
Confidence 348888999999999999999999988875532 11111100000000000 0000011 1122333443 444443
Q ss_pred CCCCCcchHhhhhchHHHHHHhhCCCcCEEEEecCCCccHH--HHHHHHH
Q 024040 149 QFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGGTVT--GAGRFLK 196 (273)
Q Consensus 149 ~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~iv~p~G~Gg~~~--Gi~~~~k 196 (273)
- |.+. .-..-+..|.++++ ++..+++-+|-|+.+- .+..+++
T Consensus 234 l---Plt~-~T~~li~~~~l~~M--k~ga~lINvaRG~lVde~AL~~AL~ 277 (347)
T PLN02928 234 C---TLTK-ETAGIVNDEFLSSM--KKGALLVNIARGGLLDYDAVLAALE 277 (347)
T ss_pred C---CCCh-HhhcccCHHHHhcC--CCCeEEEECCCccccCHHHHHHHHH
Confidence 2 2333 23456678888888 5789999999999873 4444444
No 450
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=35.22 E-value=2e+02 Score=26.35 Aligned_cols=18 Identities=22% Similarity=0.516 Sum_probs=11.6
Q ss_pred CcCEEEEecCCCccHHHHHH
Q 024040 174 KVDAFIAGIGTGGTVTGAGR 193 (273)
Q Consensus 174 ~~d~iv~p~G~Gg~~~Gi~~ 193 (273)
++| +|+++|||..+ =+++
T Consensus 87 ~~D-~IIaiGGGS~i-D~aK 104 (382)
T PRK10624 87 GAD-YLIAIGGGSPQ-DTCK 104 (382)
T ss_pred CCC-EEEEeCChHHH-HHHH
Confidence 567 67888877654 3444
No 451
>PRK06202 hypothetical protein; Provisional
Probab=35.15 E-value=45 Score=28.02 Aligned_cols=37 Identities=19% Similarity=0.368 Sum_probs=26.8
Q ss_pred CEEEEecCCCccHHHHHHHHHhhCCCcEEEEEecCCC
Q 024040 176 DAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSES 212 (273)
Q Consensus 176 d~iv~p~G~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~ 212 (273)
..+=+++|+|.+..-++..++..++..+|+||++...
T Consensus 63 ~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~ 99 (232)
T PRK06202 63 TLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPR 99 (232)
T ss_pred EEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHH
Confidence 4555678888776666666666667789999998754
No 452
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=35.12 E-value=2.6e+02 Score=23.07 Aligned_cols=33 Identities=21% Similarity=0.314 Sum_probs=27.0
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecC
Q 024040 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPS 101 (273)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~ 101 (273)
.+.+|+.++|..|.+++......|.+++++...
T Consensus 6 ~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~ 38 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFAAEGARVVVTDRN 38 (251)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 355888888999999999988899997776554
No 453
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=35.09 E-value=1.6e+02 Score=23.20 Aligned_cols=44 Identities=32% Similarity=0.330 Sum_probs=33.2
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 024040 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEV 118 (273)
Q Consensus 72 vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v 118 (273)
|--..-|+.|..+|......|++++++= ..+.+.+.+...|+++
T Consensus 4 Ig~IGlG~mG~~~a~~L~~~g~~v~~~d---~~~~~~~~~~~~g~~~ 47 (163)
T PF03446_consen 4 IGFIGLGNMGSAMARNLAKAGYEVTVYD---RSPEKAEALAEAGAEV 47 (163)
T ss_dssp EEEE--SHHHHHHHHHHHHTTTEEEEEE---SSHHHHHHHHHTTEEE
T ss_pred EEEEchHHHHHHHHHHHHhcCCeEEeec---cchhhhhhhHHhhhhh
Confidence 4555779999999999999999999884 3567788777777444
No 454
>PRK02731 histidinol-phosphate aminotransferase; Validated
Probab=34.98 E-value=2.4e+02 Score=25.19 Aligned_cols=51 Identities=18% Similarity=-0.003 Sum_probs=27.9
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 024040 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (273)
Q Consensus 72 vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 123 (273)
|+..+++..+..+...+- .+-.-.|+++...-..-....+.+|++++.++.
T Consensus 87 i~~t~G~~~~l~~~~~~l-~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~ 137 (367)
T PRK02731 87 IILGNGSDEILELLARAY-LGPGDEVIYSEHGFAVYPIAAQAVGAKPVEVPA 137 (367)
T ss_pred EEEcCCHHHHHHHHHHHh-cCCCCEEEEecCCHHHHHHHHHHcCCeEEEecc
Confidence 665665565555443322 222234555543323334446779999998874
No 455
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=34.84 E-value=2.6e+02 Score=24.52 Aligned_cols=52 Identities=21% Similarity=0.147 Sum_probs=32.5
Q ss_pred EEeeCCChHHHHHHHHHHHc-------------CCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 024040 72 LIELTSGNTGIGLAFIAASR-------------GYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (273)
Q Consensus 72 vv~~ssGN~g~a~A~~a~~~-------------g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 123 (273)
++..++|..+..+|..+.+. +-+.+|+++...-......++.+|++++.++.
T Consensus 60 ~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~h~~~~~~~~~~g~~~~~v~~ 124 (345)
T cd06450 60 GVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHVSVEKAAAYLDVKVRLVPV 124 (345)
T ss_pred EEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcCcchhHHHHHHHHHhcCeEEeee
Confidence 56667777777766665432 12456677665444455556667888888763
No 456
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=34.65 E-value=1.8e+02 Score=25.65 Aligned_cols=58 Identities=17% Similarity=0.202 Sum_probs=39.5
Q ss_pred CCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCH----HHHHHHHHcCCEEEEeCC
Q 024040 65 ITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSI----ERRIILRALGAEVYLADP 123 (273)
Q Consensus 65 ~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~----~~~~~~~~~Ga~v~~~~~ 123 (273)
+.+|.. |.|.+.+.+..++-..|...|.++.+++.++-|. .-.+.+...|-.+..+..
T Consensus 107 I~~g~~-ILTh~~S~tv~~~l~~A~~~gk~~~V~v~EsrP~~qG~~la~eL~~~GI~vtlI~D 168 (275)
T PRK08335 107 IDDGDV-IITHSFSSAVLEILKTAKRKGKRFKVILTESAPDYEGLALANELEFLGIEFEVITD 168 (275)
T ss_pred cCCCCE-EEEECCcHHHHHHHHHHHHcCCceEEEEecCCCchhHHHHHHHHHHCCCCEEEEec
Confidence 344454 7777755566666666788888888888776552 235567778988887764
No 457
>PRK06500 short chain dehydrogenase; Provisional
Probab=34.62 E-value=2.6e+02 Score=23.02 Aligned_cols=51 Identities=20% Similarity=0.135 Sum_probs=34.4
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHH-HHHHcCCEEEEeC
Q 024040 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRI-ILRALGAEVYLAD 122 (273)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~-~~~~~Ga~v~~~~ 122 (273)
.+.+|+..+|.-|.++|......|.+++++... ..+.. ..+..|.++..+.
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~---~~~~~~~~~~~~~~~~~~~ 58 (249)
T PRK06500 7 KTALITGGTSGIGLETARQFLAEGARVAITGRD---PASLEAARAELGESALVIR 58 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCC---HHHHHHHHHHhCCceEEEE
Confidence 455788888999999999988899987665432 23322 2344577765543
No 458
>PRK06425 histidinol-phosphate aminotransferase; Validated
Probab=34.57 E-value=3.3e+02 Score=24.09 Aligned_cols=49 Identities=10% Similarity=-0.185 Sum_probs=31.2
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 024040 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (273)
Q Consensus 72 vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 123 (273)
|+..+++..++.++... ++-. .++++.-+-..-....+.+|++++.++-
T Consensus 60 I~it~Gs~~~l~~~~~~--~~~~-~vv~~~P~y~~y~~~~~~~G~~v~~vp~ 108 (332)
T PRK06425 60 VLIGPGLTHFIYRLLSY--INVG-NIIIVEPNFNEYKGYAFTHGIRISALPF 108 (332)
T ss_pred EEECCCHHHHHHHHHHH--hCCC-cEEEeCCChHHHHHHHHHcCCeEEEEeC
Confidence 77777777787766642 3322 3444433334556667889999998874
No 459
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=34.52 E-value=2.9e+02 Score=23.47 Aligned_cols=55 Identities=31% Similarity=0.478 Sum_probs=36.6
Q ss_pred cCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 024040 62 KGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (273)
Q Consensus 62 ~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 119 (273)
...+.++...+|...+|..|.+++..++.+|.+.+++... ..+.+.++.+|++..
T Consensus 134 ~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~~ 188 (323)
T cd08241 134 RARLQPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASS---EEKLALARALGADHV 188 (323)
T ss_pred hcCCCCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCC---HHHHHHHHHcCCcee
Confidence 3445666664555556889999999999999885554332 355666666776443
No 460
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein
Probab=34.43 E-value=1.8e+02 Score=25.58 Aligned_cols=52 Identities=25% Similarity=0.270 Sum_probs=31.6
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 024040 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (273)
Q Consensus 72 vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 123 (273)
++..++|..+..++..+-..+-.-.|++|...-......++..|++++.++-
T Consensus 36 ~~~~~sgt~al~~~l~~l~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~ 87 (352)
T cd00616 36 AVAVSSGTAALHLALRALGIGPGDEVIVPSFTFVATANAILLLGATPVFVDI 87 (352)
T ss_pred EEEECCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHHHHHHHcCCeEEEEec
Confidence 4555666666555544432223345667766556666777778888888764
No 461
>PRK07538 hypothetical protein; Provisional
Probab=34.36 E-value=58 Score=29.96 Aligned_cols=29 Identities=21% Similarity=0.416 Sum_probs=26.4
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEec
Q 024040 72 LIELTSGNTGIGLAFIAASRGYKLIIIMP 100 (273)
Q Consensus 72 vv~~ssGN~g~a~A~~a~~~g~~~~i~~p 100 (273)
|+...+|-.|.++|.+.++.|++++||=.
T Consensus 3 V~IVGaG~aGl~~A~~L~~~G~~v~v~E~ 31 (413)
T PRK07538 3 VLIAGGGIGGLTLALTLHQRGIEVVVFEA 31 (413)
T ss_pred EEEECCCHHHHHHHHHHHhCCCcEEEEEc
Confidence 78889999999999999999999998854
No 462
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=34.34 E-value=1.7e+02 Score=30.57 Aligned_cols=50 Identities=20% Similarity=0.199 Sum_probs=36.4
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecCC---CC--HHHHHHHHHcCCEEEE
Q 024040 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPST---YS--IERRIILRALGAEVYL 120 (273)
Q Consensus 71 ~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~---~~--~~~~~~~~~~Ga~v~~ 120 (273)
.|+...+||+|.-+|..+.++|.+++++.... .+ ...++.....|.+++.
T Consensus 449 ~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~~~mpa~~~e~~~a~eeGV~~~~ 503 (944)
T PRK12779 449 EVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTKSEMPARVEELHHALEEGINLAV 503 (944)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCEEEEEEecCcccccccHHHHHHHHHCCCEEEe
Confidence 48899999999999999999999988887542 12 2223334456777654
No 463
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=34.27 E-value=1.5e+02 Score=23.75 Aligned_cols=66 Identities=20% Similarity=0.207 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCC--CCHHH--HHHHHHcC---CEEEEeCC
Q 024040 51 IAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPST--YSIER--RIILRALG---AEVYLADP 123 (273)
Q Consensus 51 ~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~--~~~~~--~~~~~~~G---a~v~~~~~ 123 (273)
++...+..+.+.|. + ++..|+.|. ......++++|+.-.++.... .|..| .+.++.++ .+|..+++
T Consensus 131 ~~~~~l~~L~~~Gi-----~-~~i~TGD~~-~~a~~~~~~lgi~~~~v~a~~~~kP~~k~~~~~i~~l~~~~~~v~~vGD 203 (215)
T PF00702_consen 131 GAKEALQELKEAGI-----K-VAILTGDNE-STASAIAKQLGIFDSIVFARVIGKPEPKIFLRIIKELQVKPGEVAMVGD 203 (215)
T ss_dssp THHHHHHHHHHTTE-----E-EEEEESSEH-HHHHHHHHHTTSCSEEEEESHETTTHHHHHHHHHHHHTCTGGGEEEEES
T ss_pred hhhhhhhhhhccCc-----c-eeeeecccc-ccccccccccccccccccccccccccchhHHHHHHHHhcCCCEEEEEcc
Confidence 46677777777774 2 555664444 455666889999655555555 67888 88888766 36777764
No 464
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=34.19 E-value=2.6e+02 Score=24.68 Aligned_cols=57 Identities=23% Similarity=0.248 Sum_probs=38.3
Q ss_pred HHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHH-HHHHHHHcCCE
Q 024040 59 AEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIE-RRIILRALGAE 117 (273)
Q Consensus 59 a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~-~~~~~~~~Ga~ 117 (273)
..++=.++||.+ |....+| +|.-+-++|+++|.+++-+.=...... -.+.++..|-+
T Consensus 64 ~~~kl~L~~G~~-lLDiGCG-WG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~ 121 (283)
T COG2230 64 ILEKLGLKPGMT-LLDIGCG-WGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLE 121 (283)
T ss_pred HHHhcCCCCCCE-EEEeCCC-hhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCC
Confidence 344556888877 9999999 887778889999999887743211111 13345566665
No 465
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=34.17 E-value=96 Score=23.01 Aligned_cols=84 Identities=24% Similarity=0.336 Sum_probs=49.2
Q ss_pred hHHHHHHhhCCCcCEEEEecCCCccHHHHHHHHHhhCCCcEEEEEecCCCccccCCCCCCccccccCCCCCcccccccCC
Q 024040 163 TGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAML 242 (273)
Q Consensus 163 ~~~Ei~~q~~~~~d~iv~p~G~Gg~~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~~~~~~~~~~glg~~~~~~~~~~~~~ 242 (273)
.+.++.+++ +..+||+..-+|.++- .+....|.+.|+++.+.....- . -.+-.|..|..+.....
T Consensus 7 aa~~~A~~~--~ak~Ivv~T~sG~ta~----~isk~RP~~pIiavt~~~~~~r--------~-l~l~~GV~p~~~~~~~~ 71 (117)
T PF02887_consen 7 AAVELAEDL--NAKAIVVFTESGRTAR----LISKYRPKVPIIAVTPNESVAR--------Q-LSLYWGVYPVLIEEFDK 71 (117)
T ss_dssp HHHHHHHHH--TESEEEEE-SSSHHHH----HHHHT-TSSEEEEEESSHHHHH--------H-GGGSTTEEEEECSSHSH
T ss_pred HHHHHHHhc--CCCEEEEECCCchHHH----HHHhhCCCCeEEEEcCcHHHHh--------h-hhcccceEEEEeccccc
Confidence 355777777 3789999999998764 4455579999999987654210 0 01223333322221111
Q ss_pred CeEEEeCHHHHHHHHHHHHHHcCce
Q 024040 243 DEVITVSSEEAIETSKLLALKEGLL 267 (273)
Q Consensus 243 d~~v~v~d~e~~~a~~~l~~~eGi~ 267 (273)
| .++.++....++++.|++
T Consensus 72 ~------~~~~~~~a~~~~~~~g~~ 90 (117)
T PF02887_consen 72 D------TEELIAEALEYAKERGLL 90 (117)
T ss_dssp S------HHHHHHHHHHHHHHTTSS
T ss_pred c------HHHHHHHHHHHHHHcCCC
Confidence 2 566666666677777873
No 466
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=34.08 E-value=1.4e+02 Score=27.44 Aligned_cols=34 Identities=12% Similarity=0.136 Sum_probs=27.4
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcC-------CeEEEEecCC
Q 024040 69 KTVLIELTSGNTGIGLAFIAASRG-------YKLIIIMPST 102 (273)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g-------~~~~i~~p~~ 102 (273)
...|..-.+|+||.|+|......| -++.++..+.
T Consensus 11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~ 51 (365)
T PTZ00345 11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEE 51 (365)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecc
Confidence 334888899999999999988876 5888887653
No 467
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=34.08 E-value=1.5e+02 Score=27.59 Aligned_cols=45 Identities=16% Similarity=0.173 Sum_probs=33.4
Q ss_pred ChHHHHHHHHHHHcCCeEEEEecCCC--CHHHHHH----HHHcCCEEEEeC
Q 024040 78 GNTGIGLAFIAASRGYKLIIIMPSTY--SIERRII----LRALGAEVYLAD 122 (273)
Q Consensus 78 GN~g~a~A~~a~~~g~~~~i~~p~~~--~~~~~~~----~~~~Ga~v~~~~ 122 (273)
.|.+.+++..++++|++++++.|+.. .+..++. .+..|+++....
T Consensus 204 ~~Va~Sl~~~~~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~~~~ 254 (395)
T PRK07200 204 LSVPQGIIGLMTRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFRQVN 254 (395)
T ss_pred chHHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 37789999999999999999999854 3333333 456788877654
No 468
>PRK06290 aspartate aminotransferase; Provisional
Probab=33.90 E-value=3.8e+02 Score=24.68 Aligned_cols=51 Identities=12% Similarity=0.011 Sum_probs=30.8
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 024040 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (273)
Q Consensus 72 vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 123 (273)
|+..+++..++.++..+- .+-.-.|++|.-.-..-...++.+|++++.++-
T Consensus 109 I~it~Gs~~al~~~~~~~-~~~gd~Vlv~~P~y~~~~~~~~~~g~~v~~v~~ 159 (410)
T PRK06290 109 VIHSIGSKPALAMLPSCF-INPGDVTLMTVPGYPVTGTHTKYYGGEVYNLPL 159 (410)
T ss_pred EEEccCHHHHHHHHHHHh-CCCCCEEEEeCCCCccHHHHHHHcCCEEEEEec
Confidence 777777778776665433 222223444432333345667789999998864
No 469
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=33.85 E-value=1.5e+02 Score=26.86 Aligned_cols=50 Identities=16% Similarity=0.216 Sum_probs=36.9
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecCCC------CH----HHHHHHHHcCCEEEE
Q 024040 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTY------SI----ERRIILRALGAEVYL 120 (273)
Q Consensus 71 ~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~------~~----~~~~~~~~~Ga~v~~ 120 (273)
.++...+|+.|.-+|...+..|.+++++.+... ++ .-.+.++..|.+++.
T Consensus 143 ~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gV~i~~ 202 (377)
T PRK04965 143 RVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLL 202 (377)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccchhCCHHHHHHHHHHHHhCCCEEEE
Confidence 378888999999999999999999999986431 21 123456667777654
No 470
>PRK05868 hypothetical protein; Validated
Probab=33.80 E-value=64 Score=29.35 Aligned_cols=29 Identities=14% Similarity=0.332 Sum_probs=26.3
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEec
Q 024040 72 LIELTSGNTGIGLAFIAASRGYKLIIIMP 100 (273)
Q Consensus 72 vv~~ssGN~g~a~A~~a~~~g~~~~i~~p 100 (273)
|+...+|-.|.++|...++.|++++|+=.
T Consensus 4 V~IvGgG~aGl~~A~~L~~~G~~v~viE~ 32 (372)
T PRK05868 4 VVVSGASVAGTAAAYWLGRHGYSVTMVER 32 (372)
T ss_pred EEEECCCHHHHHHHHHHHhCCCCEEEEcC
Confidence 78889999999999999999999998853
No 471
>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative. This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.
Probab=33.77 E-value=2.7e+02 Score=22.87 Aligned_cols=52 Identities=21% Similarity=0.185 Sum_probs=35.3
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeCC
Q 024040 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS--IERRIILRALGAEVYLADP 123 (273)
Q Consensus 72 vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~--~~~~~~~~~~Ga~v~~~~~ 123 (273)
+|+..+|.-|.++|....+.|.+++++.....+ ....+.++..+.++..+..
T Consensus 2 lItGas~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 55 (239)
T TIGR01831 2 LVTGASRGIGRAIANRLAADGFEICVHYHSGRSDAESVVSAIQAQGGNARLLQF 55 (239)
T ss_pred EEeCCCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEc
Confidence 677778889999999998899997766543221 1223445566777766553
No 472
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=33.77 E-value=2.3e+02 Score=25.12 Aligned_cols=57 Identities=19% Similarity=0.207 Sum_probs=35.2
Q ss_pred CCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCH----HHHHHHHHcCCEEEEeC
Q 024040 65 ITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSI----ERRIILRALGAEVYLAD 122 (273)
Q Consensus 65 ~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~----~~~~~~~~~Ga~v~~~~ 122 (273)
+..|.. |.|.+.+.+...+-..|...|.++.+++.++-|. ...+.+...|-++..+.
T Consensus 113 i~~g~~-ILT~~~S~tv~~~l~~a~~~~~~f~V~v~EsrP~~~G~~~a~~L~~~gI~vtlI~ 173 (301)
T TIGR00511 113 IRDGDV-VMTHCNSEAALSVIKTAFEQGKDIEVIATETRPRKQGHITAKELRDYGIPVTLIV 173 (301)
T ss_pred cCCCCE-EEEECCcHHHHHHHHHHHHcCCcEEEEEecCCCcchHHHHHHHHHHCCCCEEEEe
Confidence 344454 8888766666666666777888888888776542 22344444555555543
No 473
>PRK05650 short chain dehydrogenase; Provisional
Probab=33.67 E-value=2.8e+02 Score=23.40 Aligned_cols=53 Identities=21% Similarity=0.268 Sum_probs=35.7
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCC
Q 024040 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLADP 123 (273)
Q Consensus 71 ~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~~ 123 (273)
.+|+..+|.-|.++|......|.+++++...... +.....++..|.++..+..
T Consensus 3 vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~ 56 (270)
T PRK05650 3 VMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGGDGFYQRC 56 (270)
T ss_pred EEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEc
Confidence 3788888889999999988889998776543211 1223345566777765543
No 474
>PRK06436 glycerate dehydrogenase; Provisional
Probab=33.65 E-value=3.4e+02 Score=24.07 Aligned_cols=94 Identities=14% Similarity=0.092 Sum_probs=59.1
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCC
Q 024040 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQ 149 (273)
Q Consensus 70 ~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 149 (273)
++|..-.-||-|+++|..++.+|++++.+-+...+ .|+... .. +. .++.++. +...++-
T Consensus 123 ktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~---------~~~~~~-~~---~l-------~ell~~a-Div~~~l 181 (303)
T PRK06436 123 KSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN---------DGISSI-YM---EP-------EDIMKKS-DFVLISL 181 (303)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc---------cCcccc-cC---CH-------HHHHhhC-CEEEECC
Confidence 34777788999999999999999999887654211 132211 11 12 2333333 4554433
Q ss_pred CCCCcchHhhhhchHHHHHHhhCCCcCEEEEecCCCccHHH
Q 024040 150 FENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGGTVTG 190 (273)
Q Consensus 150 ~~~~~~~~~g~~t~~~Ei~~q~~~~~d~iv~p~G~Gg~~~G 190 (273)
-.++. -+..+..+.++++ ++..+++-+|.|+..--
T Consensus 182 p~t~~----T~~li~~~~l~~m--k~ga~lIN~sRG~~vd~ 216 (303)
T PRK06436 182 PLTDE----TRGMINSKMLSLF--RKGLAIINVARADVVDK 216 (303)
T ss_pred CCCch----hhcCcCHHHHhcC--CCCeEEEECCCccccCH
Confidence 22332 3445667888888 46899999999998753
No 475
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=33.58 E-value=2.5e+02 Score=23.53 Aligned_cols=34 Identities=24% Similarity=0.353 Sum_probs=21.0
Q ss_pred eEEEeeCCChHH---HHHHHHHHHcCCeEEEEecCCC
Q 024040 70 TVLIELTSGNTG---IGLAFIAASRGYKLIIIMPSTY 103 (273)
Q Consensus 70 ~~vv~~ssGN~g---~a~A~~a~~~g~~~~i~~p~~~ 103 (273)
+.+|.+.+||.| ..+|...+..|.+++++...+.
T Consensus 51 ~v~vlcG~GnNGGDG~VaAR~L~~~G~~V~v~~~~~~ 87 (203)
T COG0062 51 RVLVLCGPGNNGGDGLVAARHLKAAGYAVTVLLLGDP 87 (203)
T ss_pred EEEEEECCCCccHHHHHHHHHHHhCCCceEEEEeCCC
Confidence 346666666654 4445555666888888885533
No 476
>PRK12747 short chain dehydrogenase; Provisional
Probab=33.50 E-value=2.8e+02 Score=23.10 Aligned_cols=54 Identities=19% Similarity=0.144 Sum_probs=34.6
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeC
Q 024040 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS--IERRIILRALGAEVYLAD 122 (273)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~--~~~~~~~~~~Ga~v~~~~ 122 (273)
...+|+..+|--|.++|....+.|.++++....... ......++..|.++..+.
T Consensus 5 k~~lItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (252)
T PRK12747 5 KVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSIG 60 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHHhcCCceEEEe
Confidence 455888888889999999988899987775322111 122334555566655443
No 477
>PRK05854 short chain dehydrogenase; Provisional
Probab=33.41 E-value=3.3e+02 Score=23.85 Aligned_cols=72 Identities=19% Similarity=0.238 Sum_probs=39.7
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHc--CCEEEEeCCC-CChhHHHHHHHHHHHh
Q 024040 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRAL--GAEVYLADPA-VGFEGFVKKGEEILNR 140 (273)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~--Ga~v~~~~~~-~~~~~~~~~a~~~~~~ 140 (273)
.+.||+..++--|.++|..-.+.|.+++++...... ....+.++.. +.++..+..+ .+.++..+.+.++.++
T Consensus 15 k~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~ 90 (313)
T PRK05854 15 KRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAE 90 (313)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHh
Confidence 345777777778888888888889887776553211 1112233322 3455444322 2345555555555444
No 478
>PF11814 DUF3335: Peptidase_C39 like family; InterPro: IPR021770 This family of proteins are functionally uncharacterised. This family is only found in bacteria. This presumed domain is typically between 226 to 230 amino acids in length.
Probab=33.38 E-value=1.2e+02 Score=25.50 Aligned_cols=31 Identities=29% Similarity=0.515 Sum_probs=22.0
Q ss_pred EEeeC--CChHHHHHHHHHHHcCCeEEEEecCC
Q 024040 72 LIELT--SGNTGIGLAFIAASRGYKLIIIMPST 102 (273)
Q Consensus 72 vv~~s--sGN~g~a~A~~a~~~g~~~~i~~p~~ 102 (273)
|...| +|-+-.+||.+|++.|+++.+++...
T Consensus 45 ifmtsGhGGC~P~GLAlAA~rrG~~vev~~~~~ 77 (207)
T PF11814_consen 45 IFMTSGHGGCGPFGLALAAARRGFKVEVWVSTD 77 (207)
T ss_pred ecccCCCCCcChHHHHHHHHHcCCceEEEECCC
Confidence 55444 24455677777888899999999754
No 479
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=33.34 E-value=3.1e+02 Score=23.44 Aligned_cols=32 Identities=25% Similarity=0.221 Sum_probs=23.8
Q ss_pred CeEEEeeCCC--hHHHHHHHHHHHcCCeEEEEec
Q 024040 69 KTVLIELTSG--NTGIGLAFIAASRGYKLIIIMP 100 (273)
Q Consensus 69 ~~~vv~~ssG--N~g~a~A~~a~~~g~~~~i~~p 100 (273)
...||+..++ .-|.++|....+.|.+++++-.
T Consensus 8 k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r 41 (271)
T PRK06505 8 KRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQ 41 (271)
T ss_pred CEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecC
Confidence 3447777664 6888999888889998877643
No 480
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=33.27 E-value=2.6e+02 Score=22.56 Aligned_cols=32 Identities=25% Similarity=0.416 Sum_probs=22.4
Q ss_pred CCeEEEeeCCChHHHHHHHHHHHcCCeEEEEe
Q 024040 68 GKTVLIELTSGNTGIGLAFIAASRGYKLIIIM 99 (273)
Q Consensus 68 g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~ 99 (273)
+.+.+|...+|..|+++|....+.|.+++++-
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~ 59 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAREGARVVLVG 59 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEc
Confidence 34545555569999988888887887666654
No 481
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=33.25 E-value=1.6e+02 Score=26.73 Aligned_cols=51 Identities=22% Similarity=0.237 Sum_probs=33.9
Q ss_pred EEeeCCC--hHHHHHHHHHHHcCCeEEEEecCCCC--HHHH----HHHHHcCCEEEEeC
Q 024040 72 LIELTSG--NTGIGLAFIAASRGYKLIIIMPSTYS--IERR----IILRALGAEVYLAD 122 (273)
Q Consensus 72 vv~~ssG--N~g~a~A~~a~~~g~~~~i~~p~~~~--~~~~----~~~~~~Ga~v~~~~ 122 (273)
|.-...+ |.+.++..+++++|++++++.|+... ...+ +..+..|+++...+
T Consensus 159 ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~ 217 (336)
T PRK03515 159 LAYAGDARNNMGNSLLEAAALTGLDLRLVAPKACWPEAALVTECRALAQKNGGNITLTE 217 (336)
T ss_pred EEEeCCCcCcHHHHHHHHHHHcCCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEEEEc
Confidence 4444443 67899999999999999999987532 2222 22344688877664
No 482
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=33.22 E-value=1.7e+02 Score=26.00 Aligned_cols=48 Identities=27% Similarity=0.236 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHcCCCCCCCeEEEee-C-CChHHHHHHHHHHHcCCeEEEEecC
Q 024040 50 RIAYSMIKDAEDKGLITPGKTVLIEL-T-SGNTGIGLAFIAASRGYKLIIIMPS 101 (273)
Q Consensus 50 R~a~~~~~~a~~~g~~~~g~~~vv~~-s-sGN~g~a~A~~a~~~g~~~~i~~p~ 101 (273)
+.+...+..|.++|+ .-.|+.. | -.+.|+.+|...++.|++++++...
T Consensus 126 ~tv~~~l~~a~~~~~----~f~V~v~EsrP~~~G~~~a~~L~~~gI~vtlI~Ds 175 (301)
T TIGR00511 126 EAALSVIKTAFEQGK----DIEVIATETRPRKQGHITAKELRDYGIPVTLIVDS 175 (301)
T ss_pred HHHHHHHHHHHHcCC----cEEEEEecCCCcchHHHHHHHHHHCCCCEEEEehh
Confidence 667777788877765 2224444 3 3888999999999999999987654
No 483
>PRK06138 short chain dehydrogenase; Provisional
Probab=33.19 E-value=2.8e+02 Score=22.90 Aligned_cols=53 Identities=9% Similarity=0.173 Sum_probs=33.8
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeC
Q 024040 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLAD 122 (273)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~ 122 (273)
.+.+|+..+|--|.++|......|.+++++...... ......++ .+.++..+.
T Consensus 6 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~ 59 (252)
T PRK06138 6 RVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA-AGGRAFARQ 59 (252)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh-cCCeEEEEE
Confidence 355888888999999999888889887666543211 11222333 466665554
No 484
>PLN03026 histidinol-phosphate aminotransferase; Provisional
Probab=33.14 E-value=3e+02 Score=24.99 Aligned_cols=52 Identities=15% Similarity=-0.100 Sum_probs=28.1
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCC
Q 024040 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPA 124 (273)
Q Consensus 72 vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~ 124 (273)
|+..+++..++.++..+- ..-.-.|+++.-.-..-....+.+|++++.++.+
T Consensus 106 I~~t~Ga~~~i~~~~~~~-~~~gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~ 157 (380)
T PLN03026 106 ILVGCGADELIDLLMRCV-LDPGDKIIDCPPTFGMYVFDAAVNGAEVIKVPRT 157 (380)
T ss_pred EEEcCCHHHHHHHHHHHh-cCCCCEEEEcCCChHHHHHHHHHcCCEEEEeecC
Confidence 666666666666554332 1211234444322233344566799999988653
No 485
>PRK07060 short chain dehydrogenase; Provisional
Probab=33.03 E-value=2.5e+02 Score=23.06 Aligned_cols=52 Identities=25% Similarity=0.224 Sum_probs=35.6
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHH-HHcCCEEEEeCC
Q 024040 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIIL-RALGAEVYLADP 123 (273)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~-~~~Ga~v~~~~~ 123 (273)
.+.+|+..+|.-|..++......|.+++++... ..+.+.+ +..+.+++.++-
T Consensus 10 ~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~---~~~~~~~~~~~~~~~~~~D~ 62 (245)
T PRK07060 10 KSVLVTGASSGIGRACAVALAQRGARVVAAARN---AAALDRLAGETGCEPLRLDV 62 (245)
T ss_pred CEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHHhCCeEEEecC
Confidence 355777788899999999999999987665543 2333333 345677766653
No 486
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=32.96 E-value=2.2e+02 Score=25.40 Aligned_cols=29 Identities=24% Similarity=0.251 Sum_probs=23.2
Q ss_pred CCChHHHHHHHHHHHcCCeEEEEecCCCC
Q 024040 76 TSGNTGIGLAFIAASRGYKLIIIMPSTYS 104 (273)
Q Consensus 76 ssGN~g~a~A~~a~~~g~~~~i~~p~~~~ 104 (273)
-.+|.+.+++..++++|++++++.|+..+
T Consensus 161 d~~rv~~Sl~~~~~~~G~~v~~~~P~~~~ 189 (311)
T PRK14804 161 VHNNVVNSLIGITAALGIHLTLVTPIAAK 189 (311)
T ss_pred CCCcHHHHHHHHHHHcCCEEEEECCCCcc
Confidence 34788888888888888888888887643
No 487
>PRK06101 short chain dehydrogenase; Provisional
Probab=32.93 E-value=2.8e+02 Score=22.92 Aligned_cols=46 Identities=24% Similarity=0.254 Sum_probs=31.9
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 024040 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (273)
Q Consensus 71 ~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 119 (273)
.+|+..+|.-|.++|..-...|.+++++... ..+.+.+...+.++.
T Consensus 4 vlItGas~giG~~la~~L~~~G~~V~~~~r~---~~~~~~~~~~~~~~~ 49 (240)
T PRK06101 4 VLITGATSGIGKQLALDYAKQGWQVIACGRN---QSVLDELHTQSANIF 49 (240)
T ss_pred EEEEcCCcHHHHHHHHHHHhCCCEEEEEECC---HHHHHHHHHhcCCCe
Confidence 4788888889999998888889997776543 345555544443443
No 488
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=32.89 E-value=2.6e+02 Score=22.45 Aligned_cols=70 Identities=17% Similarity=0.132 Sum_probs=39.3
Q ss_pred HHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCcchHhhhhchHHHHHHhhCCCcCEEEEecCCCc
Q 024040 111 LRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGG 186 (273)
Q Consensus 111 ~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~iv~p~G~Gg 186 (273)
...+|.+++.-+. .+...+++.+.+.......++++-+.|.|.... .+-.++++++. ..+.+++|.-.||
T Consensus 61 ~~~~~v~~i~~~~-~G~~~si~~al~~~~~~~~~vlv~~~D~P~l~~----~~i~~l~~~~~-~~~~vi~p~~~GG 130 (195)
T TIGR03552 61 ARNLGAPVLRDPG-PGLNNALNAALAEAREPGGAVLILMADLPLLTP----RELKRLLAAAT-EGDVVIAPDRGGG 130 (195)
T ss_pred HHhcCCEEEecCC-CCHHHHHHHHHHHhhccCCeEEEEeCCCCCCCH----HHHHHHHHhcc-cCCEEEEecCCCC
Confidence 3445666543322 245566766665543322467777778887542 12234555552 4578889886664
No 489
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=32.84 E-value=3.9e+02 Score=24.48 Aligned_cols=60 Identities=20% Similarity=0.300 Sum_probs=44.9
Q ss_pred HHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEe
Q 024040 59 AEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLA 121 (273)
Q Consensus 59 a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~ 121 (273)
+.+..+.+||.+ ++...-|--|+|.-..|+..|-.-+|-+.. .+.|++.-+.|||+=.+-
T Consensus 177 v~nta~v~~G~t-vaV~GlGgVGlaaI~gA~~agA~~IiAvD~--~~~Kl~~A~~fGAT~~vn 236 (366)
T COG1062 177 VVNTAKVEPGDT-VAVFGLGGVGLAAIQGAKAAGAGRIIAVDI--NPEKLELAKKFGATHFVN 236 (366)
T ss_pred hhhcccCCCCCe-EEEEeccHhHHHHHHHHHHcCCceEEEEeC--CHHHHHHHHhcCCceeec
Confidence 445566778776 888888888888888888888887777753 568888888888874443
No 490
>PRK07904 short chain dehydrogenase; Provisional
Probab=32.83 E-value=3e+02 Score=23.16 Aligned_cols=53 Identities=13% Similarity=0.134 Sum_probs=32.3
Q ss_pred CeEEEeeCCChHHHHHHHHHHHc-CCeEEEEecCCCC--HHHHHHHHHcCC-EEEEe
Q 024040 69 KTVLIELTSGNTGIGLAFIAASR-GYKLIIIMPSTYS--IERRIILRALGA-EVYLA 121 (273)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~-g~~~~i~~p~~~~--~~~~~~~~~~Ga-~v~~~ 121 (273)
.+.+|+..+|--|.++|....+. |.+++++...... ....+.++..|. +++.+
T Consensus 9 ~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~ 65 (253)
T PRK07904 9 QTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVI 65 (253)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEE
Confidence 34577777787888888876666 4888877654322 122344555553 55444
No 491
>PRK08265 short chain dehydrogenase; Provisional
Probab=32.81 E-value=3e+02 Score=23.16 Aligned_cols=52 Identities=13% Similarity=0.155 Sum_probs=33.4
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeC
Q 024040 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLAD 122 (273)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~ 122 (273)
.+.+|+..+|--|.++|......|.+++++-... ....+..+..+.++..+.
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~~ 58 (261)
T PRK08265 7 KVAIVTGGATLIGAAVARALVAAGARVAIVDIDA--DNGAAVAASLGERARFIA 58 (261)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHhCCeeEEEE
Confidence 3457787888899999999888999877664321 112223334466665554
No 492
>smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group.
Probab=32.67 E-value=2.2e+02 Score=21.54 Aligned_cols=52 Identities=35% Similarity=0.337 Sum_probs=32.2
Q ss_pred EEeeCCChHHHHHHHHHHHcCCe-EEEEecCCCCHH----HHHHHHHcCCEEEEeCC
Q 024040 72 LIELTSGNTGIGLAFIAASRGYK-LIIIMPSTYSIE----RRIILRALGAEVYLADP 123 (273)
Q Consensus 72 vv~~ssGN~g~a~A~~a~~~g~~-~~i~~p~~~~~~----~~~~~~~~Ga~v~~~~~ 123 (273)
+|+..+|..|.+++....+.|.. ++++.....+.. .+..++..|.++..+..
T Consensus 4 li~Ga~~~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (180)
T smart00822 4 LITGGLGGLGLELARWLAERGARHLVLLSRSGPDAPGAAELLAELEALGAEVTVVAC 60 (180)
T ss_pred EEEcCCChHHHHHHHHHHHhhCCeEEEEeCCCCCCccHHHHHHHHHhcCCeEEEEEC
Confidence 67777788999998888888875 444433222111 13555666777766543
No 493
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=32.52 E-value=3.2e+02 Score=23.67 Aligned_cols=72 Identities=19% Similarity=0.239 Sum_probs=33.9
Q ss_pred hhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChH----HH-HHHHHHHHcCCeEEEEecCCC--CHHHHHHHHHcCCEEEE
Q 024040 48 KDRIAYSMIKDAEDKGLITPGKTVLIELTSGNT----GI-GLAFIAASRGYKLIIIMPSTY--SIERRIILRALGAEVYL 120 (273)
Q Consensus 48 K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~----g~-a~A~~a~~~g~~~~i~~p~~~--~~~~~~~~~~~Ga~v~~ 120 (273)
+....+.++...+++.. ... ++..+--|- |. .+.-.|+..|++-.++.+-.. ...-...++.+|-+.+.
T Consensus 72 ~~~~~~~~~~~~r~~~~---~~p-~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~~~gl~~I~ 147 (258)
T PRK13111 72 TLADVFELVREIREKDP---TIP-IVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAAKKHGLDLIF 147 (258)
T ss_pred CHHHHHHHHHHHHhcCC---CCC-EEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHcCCcEEE
Confidence 34445555555443321 122 455555553 21 234456667777777632111 11234455667766654
Q ss_pred -eCC
Q 024040 121 -ADP 123 (273)
Q Consensus 121 -~~~ 123 (273)
+.+
T Consensus 148 lvap 151 (258)
T PRK13111 148 LVAP 151 (258)
T ss_pred EeCC
Confidence 544
No 494
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=32.44 E-value=1.2e+02 Score=25.54 Aligned_cols=46 Identities=28% Similarity=0.293 Sum_probs=26.7
Q ss_pred hHHHHHHhhCCCcCEEEE-ecCCCccHHHHHHHHHhhCCCcEEEEEecC
Q 024040 163 TGPEIWNDSGGKVDAFIA-GIGTGGTVTGAGRFLKEKNPNIKVYGIEPS 210 (273)
Q Consensus 163 ~~~Ei~~q~~~~~d~iv~-p~G~Gg~~~Gi~~~~k~~~~~~~vigVe~~ 210 (273)
...||+-++ +||.|+= .+-.||.+.=.+.-++..+++.+|+||+-.
T Consensus 23 ~~qeli~~~--kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDId 69 (206)
T PF04989_consen 23 AYQELIWEL--KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDID 69 (206)
T ss_dssp HHHHHHHHH----SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-
T ss_pred HHHHHHHHh--CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCC
Confidence 456888887 5787763 455666655444456666788999999984
No 495
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.
Probab=32.34 E-value=2.8e+02 Score=22.61 Aligned_cols=52 Identities=27% Similarity=0.200 Sum_probs=35.1
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeCC
Q 024040 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS--IERRIILRALGAEVYLADP 123 (273)
Q Consensus 72 vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~--~~~~~~~~~~Ga~v~~~~~ 123 (273)
+|+.++|-.|..+|......|.+++++.....+ ......++..|+++..+..
T Consensus 2 lItG~~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (239)
T TIGR01830 2 LVTGASRGIGRAIALKLAKEGAKVIITYRSSEEGAEEVVEELKAYGVKALGVVC 55 (239)
T ss_pred EEECCCcHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEe
Confidence 677888889999998888889987666543211 1233455667877765543
No 496
>PRK08163 salicylate hydroxylase; Provisional
Probab=32.34 E-value=67 Score=29.13 Aligned_cols=30 Identities=20% Similarity=0.345 Sum_probs=27.2
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEec
Q 024040 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMP 100 (273)
Q Consensus 71 ~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p 100 (273)
.|+...+|-.|.++|.+.++.|++++|+=.
T Consensus 6 ~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er 35 (396)
T PRK08163 6 PVLIVGGGIGGLAAALALARQGIKVKLLEQ 35 (396)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCcEEEEee
Confidence 388899999999999999999999999854
No 497
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=32.25 E-value=3.5e+02 Score=23.68 Aligned_cols=69 Identities=30% Similarity=0.383 Sum_probs=44.6
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHH-----HHcCCEEEEeCCCC-ChhHHHHHHHHHHHh
Q 024040 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIIL-----RALGAEVYLADPAV-GFEGFVKKGEEILNR 140 (273)
Q Consensus 69 ~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~-----~~~Ga~v~~~~~~~-~~~~~~~~a~~~~~~ 140 (273)
.+.|||..|+.-|.++|..-++.|.+++++.+.. .|+..+ +.+|.+|...+-+. +.++..+...++..+
T Consensus 7 ~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~---~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~ 81 (265)
T COG0300 7 KTALITGASSGIGAELAKQLARRGYNLILVARRE---DKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKER 81 (265)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcH---HHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhc
Confidence 4558888888899999999999999999998753 443333 23566665554332 223444444444443
No 498
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=32.17 E-value=5.8e+02 Score=26.30 Aligned_cols=97 Identities=14% Similarity=0.133 Sum_probs=53.9
Q ss_pred HHHHHHHHHcCCeEEEEe---cCC--CC-H------HHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCC-CeEeeC
Q 024040 82 IGLAFIAASRGYKLIIIM---PST--YS-I------ERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTP-NGYILG 148 (273)
Q Consensus 82 ~a~A~~a~~~g~~~~i~~---p~~--~~-~------~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~-~~~~~~ 148 (273)
+..+-.|.+++.+.+++. |+. .+ . ..++..+.+||+++.+.+. +..+...++++.++ ..+.+.
T Consensus 266 R~a~RlA~~~~a~~~av~v~~~~~~~~~~~~~~~l~~~~~Lae~lGae~~~l~~~----dv~~~i~~ya~~~~~TkiViG 341 (890)
T COG2205 266 RRAARLASRLHAKWTAVYVETPELHRLSEKEARRLHENLRLAEELGAEIVTLYGG----DVAKAIARYAREHNATKIVIG 341 (890)
T ss_pred HHHHHHHHHhCCCeEEEEEeccccccccHHHHHHHHHHHHHHHHhCCeEEEEeCC----cHHHHHHHHHHHcCCeeEEeC
Confidence 444556777888877663 332 11 1 2245567899999999763 23333445555543 233443
Q ss_pred CCCCCcchHhhhhchHHHHHHhhCCCcCEEEEecC
Q 024040 149 QFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIG 183 (273)
Q Consensus 149 ~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~iv~p~G 183 (273)
............+.+..-++++. +.+|..++|..
T Consensus 342 ~~~~~rw~~~~~~~l~~~L~~~~-~~idv~ii~~~ 375 (890)
T COG2205 342 RSRRSRWRRLFKGSLADRLAREA-PGIDVHIVALD 375 (890)
T ss_pred CCcchHHHHHhcccHHHHHHhcC-CCceEEEeeCC
Confidence 33222211223466676777666 46787777764
No 499
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=32.14 E-value=59 Score=29.44 Aligned_cols=30 Identities=20% Similarity=0.431 Sum_probs=27.1
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecC
Q 024040 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPS 101 (273)
Q Consensus 72 vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~ 101 (273)
|+...+|-.|.++|+..++.|++++|+=..
T Consensus 10 ViIVGaG~~Gl~~A~~L~~~G~~v~liE~~ 39 (388)
T PRK07494 10 IAVIGGGPAGLAAAIALARAGASVALVAPE 39 (388)
T ss_pred EEEECcCHHHHHHHHHHhcCCCeEEEEeCC
Confidence 888999999999999999999999888643
No 500
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=32.08 E-value=3.4e+02 Score=24.88 Aligned_cols=51 Identities=16% Similarity=0.122 Sum_probs=29.9
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 024040 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (273)
Q Consensus 72 vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 123 (273)
|+..+++..++.++..+-. +-.-.|+++.-+-..-....+.+|++++.++-
T Consensus 107 i~it~G~~~al~~~~~~~~-~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~ 157 (412)
T PTZ00433 107 VVLCSGVSHAILMALTALC-DEGDNILVPAPGFPHYETVCKAYGIEMRFYNC 157 (412)
T ss_pred EEEeCChHHHHHHHHHHhc-CCCCEEEEccCCcccHHHHHHHcCCEEEEEec
Confidence 7767777777776655432 22223444432223345567889999988764
Done!