BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024043
(273 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QQE|A Chain A, Crystal Structure Of The Vesicular Transport Protein Sec17
Length = 292
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 125/244 (51%), Gaps = 18/244 (7%)
Query: 28 KYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT- 86
K+E+AADL +AA ++L K + AG +++K A+ K ++ EA YV+A C+K
Sbjct: 32 KFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGG 91
Query: 87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE-HNIEQTIVFFEKAADMFQNE 145
+S A+ LE A+ +F G+ A + E+ E+ E++ H+ + I +E A + + +
Sbjct: 92 NSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD 151
Query: 146 EVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLC 205
+ +N+C K A A QY ++ +IY ++ + S+ N L ++ +K + L G+CQL
Sbjct: 152 QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLA 211
Query: 206 KGDVVAITNALERYQ----------------DIAASMDEEDIAKFTDVVKEFDSMTPLDP 249
D VA L+ Q + +++E D + ++ KEFD+ LD
Sbjct: 212 ATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271
Query: 250 WKTT 253
WK T
Sbjct: 272 WKIT 275
>pdb|2IFU|A Chain A, Crystal Structure Of A Gamma-Snap From Danio Rerio
pdb|2IFU|B Chain B, Crystal Structure Of A Gamma-Snap From Danio Rerio
pdb|2IFU|C Chain C, Crystal Structure Of A Gamma-Snap From Danio Rerio
pdb|2IFU|D Chain D, Crystal Structure Of A Gamma-Snap From Danio Rerio
Length = 307
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 96/228 (42%), Gaps = 29/228 (12%)
Query: 29 YEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKK-TS 87
Y+ AA + KAA +FK AK ++A Y++ A H S AA+A+ A K
Sbjct: 32 YDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGXXLKDLQR 91
Query: 88 SNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEV 147
EA+ +E+A + + G AA +L E ++ + + +++AA +F+NEE
Sbjct: 92 XPEAVQYIEKASVXYVENGTPDTAAXALDRAGKLXEP-LDLSKAVHLYQQAAAVFENEER 150
Query: 148 TTSANQC----------KQKVAQYAAELEQ---YHKSIEIYEEIARQSLNNNLLKYGVKG 194
A + +QK + AA L++ +K E Y ++ + L+
Sbjct: 151 LRQAAELIGKASRLLVRQQKFDEAAASLQKEKSXYKEXENYPTCYKKCIAQVLV------ 204
Query: 195 HLLNAGICQLCKGDVVAITNALERYQDIAASMDEEDIAKFTDVVKEFD 242
QL + D VA + I ED A D+++ +D
Sbjct: 205 --------QLHRADYVAAQKCVRESYSIPGFSGSEDCAALEDLLQAYD 244
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 51/106 (48%), Gaps = 9/106 (8%)
Query: 83 YKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMF 142
YK+ +EAI ++A+ ++ + A + + Y + + ++ I +++KA +++
Sbjct: 20 YKQGDYDEAIEYYQKALELYPN------NAEAWYNLGNAYYKQGDYDEAIEYYQKALELY 73
Query: 143 QNE-EVTTSANQCKQKVAQYAAELEQYHKSIEIYEEI--ARQSLNN 185
N E + K Y +E Y K++E+Y A+Q+L N
Sbjct: 74 PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLGN 119
>pdb|3MXZ|A Chain A, Crystal Structure Of Tubulin Folding Cofactor A From
Arabidopsis Thaliana
Length = 116
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 33 ADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLES 68
AD+ DK A+ + L + + G + + + +CH +LES
Sbjct: 39 ADMKDKGADPYDLKQQENVLGESRMMIPDCHKRLES 74
>pdb|2VKJ|A Chain A, Structure Of The Soluble Domain Of The Membrane Protein
Tm1634 From Thermotoga Maritima
pdb|2VKJ|B Chain B, Structure Of The Soluble Domain Of The Membrane Protein
Tm1634 From Thermotoga Maritima
pdb|2VKO|A Chain A, Structure Of The Soluble Domain Of The Membrane Protein
Tm1634 From Thermotoga Maritima
pdb|2VKO|B Chain B, Structure Of The Soluble Domain Of The Membrane Protein
Tm1634 From Thermotoga Maritima
pdb|2VKO|C Chain C, Structure Of The Soluble Domain Of The Membrane Protein
Tm1634 From Thermotoga Maritima
pdb|2VKO|D Chain D, Structure Of The Soluble Domain Of The Membrane Protein
Tm1634 From Thermotoga Maritima
Length = 106
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 4/37 (10%)
Query: 127 NIEQTIVFFEKAADMFQNEEVTTSAN----QCKQKVA 159
N + +VFFEKA ++ NEE+ A+ +C++K+A
Sbjct: 68 NYGEALVFFEKALNLSDNEEIKKIASFYLEECRKKLA 104
>pdb|3B13|A Chain A, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|C Chain C, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 431
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 15/122 (12%)
Query: 86 TSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE 145
TS + +SC +N + D R M RY ++ +L+ N + E A + +
Sbjct: 4 TSKDNRMSCTVNLLNFYKDNNREEMYIRYLYKLRDLHLDCDN------YTEAAYTLLLHT 57
Query: 146 EVTT-SANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQL 204
+ S QC +V Q + Q H+ + +++L ++ Y KG + I L
Sbjct: 58 WLLKWSDEQCASQVMQTGQQHPQTHRQL-------KETLYETIIGYFDKGKMWEEAIS-L 109
Query: 205 CK 206
CK
Sbjct: 110 CK 111
>pdb|1C4T|A Chain A, Catalytic Domain From Trimeric Dihydrolipoamide
Succinyltransferase
pdb|1C4T|B Chain B, Catalytic Domain From Trimeric Dihydrolipoamide
Succinyltransferase
pdb|1C4T|C Chain C, Catalytic Domain From Trimeric Dihydrolipoamide
Succinyltransferase
pdb|1SCZ|A Chain A, Improved Structural Model For The Catalytic Domain Of
E.Coli Dihydrolipoamide Succinyltransferase
pdb|1E2O|A Chain A, Catalytic Domain From Dihydrolipoamide Succinyltransferase
Length = 233
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 41/90 (45%), Gaps = 6/90 (6%)
Query: 146 EVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGV---KGHLLNAGIC 202
E + +++VA+ E + + + E+ + + + +YG K H + G
Sbjct: 4 EKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFM 63
Query: 203 QLCKGDVVAITNALERYQDIAASMDEEDIA 232
V A+ AL+RY ++ AS+D +D+
Sbjct: 64 SFY---VKAVVEALKRYPEVNASIDGDDVV 90
>pdb|3RK3|E Chain E, Truncated Snare Complex With Complexin
Length = 63
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 9/69 (13%)
Query: 23 GLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHC 82
G GSK DAA F++A + + A+ KA + K+E++ EA + + +
Sbjct: 1 GPLGSKLPDAAKKFEEAQEALRQAEEERKA---------KYAKMEAEREAVRQGIRDKYG 51
Query: 83 YKKTSSNEA 91
KK EA
Sbjct: 52 IKKKEEREA 60
>pdb|3TON|A Chain A, Crystral Structure Of The C-Terminal Subunit Of Human
Maltase- Glucoamylase
pdb|3TON|B Chain B, Crystral Structure Of The C-Terminal Subunit Of Human
Maltase- Glucoamylase
pdb|3TOP|A Chain A, Crystral Structure Of The C-Terminal Subunit Of Human
Maltase- Glucoamylase In Complex With Acarbose
pdb|3TOP|B Chain B, Crystral Structure Of The C-Terminal Subunit Of Human
Maltase- Glucoamylase In Complex With Acarbose
Length = 908
Score = 27.7 bits (60), Expect = 7.6, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 5/83 (6%)
Query: 95 LEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADM-----FQNEEVTT 149
L +A F D R S A + +EI ELY + N E+++ F DM F N V+
Sbjct: 424 LYRAYVAFPDFFRNSTAKWWKREIEELYNNPQNPERSLKFDGMWIDMNEPSSFVNGAVSP 483
Query: 150 SANQCKQKVAQYAAELEQYHKSI 172
Y LE + +
Sbjct: 484 GCRDASLNHPPYMPHLESRDRGL 506
>pdb|1N1A|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52
pdb|1N1A|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52
Length = 140
Score = 27.3 bits (59), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 7/50 (14%)
Query: 20 NGWGLFGSKYEDAADLFDKAANSFKLA-----KSWDKAGATYVKLANCHL 64
GW L G+K++ + D DK SF L K+WD A AT CH+
Sbjct: 58 TGWLLDGTKFDSSLDRKDKF--SFDLGKGEVIKAWDIAIATMKVGEVCHI 105
>pdb|1Q1C|A Chain A, Crystal Structure Of N(1-260) Of Human Fkbp52
Length = 280
Score = 27.3 bits (59), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 7/50 (14%)
Query: 20 NGWGLFGSKYEDAADLFDKAANSFKLA-----KSWDKAGATYVKLANCHL 64
GW L G+K++ + D DK SF L K+WD A AT CH+
Sbjct: 78 TGWLLDGTKFDSSLDRKDKF--SFDLGKGEVIKAWDIAIATMKVGEVCHI 125
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.129 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,527,393
Number of Sequences: 62578
Number of extensions: 231983
Number of successful extensions: 936
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 918
Number of HSP's gapped (non-prelim): 27
length of query: 273
length of database: 14,973,337
effective HSP length: 97
effective length of query: 176
effective length of database: 8,903,271
effective search space: 1566975696
effective search space used: 1566975696
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)