Query 024043
Match_columns 273
No_of_seqs 233 out of 1533
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 08:31:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024043.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024043hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1586 Protein required for f 100.0 1.3E-53 2.8E-58 339.3 27.6 265 6-273 2-288 (288)
2 PF14938 SNAP: Soluble NSF att 100.0 2.9E-51 6.2E-56 352.0 26.5 258 6-263 1-282 (282)
3 KOG1585 Protein required for f 100.0 2.2E-29 4.9E-34 202.2 24.0 246 7-255 4-266 (308)
4 PF14938 SNAP: Soluble NSF att 99.8 5.5E-17 1.2E-21 139.5 23.2 197 68-266 30-249 (282)
5 KOG1840 Kinesin light chain [C 99.7 5.8E-15 1.3E-19 134.2 30.2 255 5-262 215-483 (508)
6 KOG4626 O-linked N-acetylgluco 99.7 1.7E-17 3.6E-22 149.1 12.3 206 27-251 232-489 (966)
7 KOG1130 Predicted G-alpha GTPa 99.7 8.3E-17 1.8E-21 138.7 11.7 210 8-220 17-262 (639)
8 KOG4626 O-linked N-acetylgluco 99.7 4.9E-16 1.1E-20 139.8 16.3 237 5-260 166-464 (966)
9 KOG1840 Kinesin light chain [C 99.7 2.6E-14 5.7E-19 129.9 25.0 215 4-220 256-477 (508)
10 KOG1130 Predicted G-alpha GTPa 99.7 1.6E-15 3.4E-20 130.9 13.7 191 27-220 69-302 (639)
11 KOG1586 Protein required for f 99.6 1.1E-12 2.3E-17 105.7 20.3 199 46-265 27-247 (288)
12 TIGR00990 3a0801s09 mitochondr 99.5 1.6E-12 3.4E-17 123.6 19.2 202 35-261 333-551 (615)
13 TIGR00990 3a0801s09 mitochondr 99.5 2.6E-12 5.7E-17 122.1 19.5 177 26-220 344-535 (615)
14 KOG1155 Anaphase-promoting com 99.4 2.1E-11 4.6E-16 106.9 20.0 160 40-224 337-497 (559)
15 COG3063 PilF Tfp pilus assembl 99.4 2.6E-11 5.7E-16 97.8 17.0 170 28-220 30-200 (250)
16 TIGR02521 type_IV_pilW type IV 99.4 4.6E-11 9.9E-16 98.1 19.3 173 27-222 25-198 (234)
17 PRK11788 tetratricopeptide rep 99.4 9.1E-11 2E-15 105.1 22.6 162 40-220 114-276 (389)
18 KOG1585 Protein required for f 99.4 1.2E-10 2.7E-15 94.6 19.9 183 30-218 68-252 (308)
19 KOG1126 DNA-binding cell divis 99.4 1.4E-12 3E-17 118.6 9.4 197 39-263 427-634 (638)
20 TIGR02917 PEP_TPR_lipo putativ 99.3 2.6E-10 5.7E-15 111.4 23.6 190 7-220 21-254 (899)
21 PRK11788 tetratricopeptide rep 99.3 9.4E-10 2E-14 98.6 25.3 179 26-220 48-241 (389)
22 TIGR03302 OM_YfiO outer membra 99.3 2.8E-10 6.1E-15 95.1 19.9 183 27-219 27-229 (235)
23 TIGR02521 type_IV_pilW type IV 99.3 2.9E-10 6.3E-15 93.3 19.8 170 27-219 45-229 (234)
24 COG3063 PilF Tfp pilus assembl 99.3 3.2E-10 6.9E-15 91.6 17.9 162 68-246 30-204 (250)
25 PRK15174 Vi polysaccharide exp 99.3 3.6E-10 7.9E-15 108.0 20.3 169 27-220 191-379 (656)
26 PRK15174 Vi polysaccharide exp 99.3 4.6E-10 1E-14 107.3 21.0 115 87-220 227-345 (656)
27 PRK09782 bacteriophage N4 rece 99.3 3.3E-10 7.2E-15 111.6 20.0 196 27-250 523-743 (987)
28 KOG2003 TPR repeat-containing 99.3 4.6E-10 9.9E-15 98.6 16.9 169 25-218 502-685 (840)
29 PRK11447 cellulose synthase su 99.2 9.8E-10 2.1E-14 111.4 20.9 181 27-220 283-522 (1157)
30 KOG1941 Acetylcholine receptor 99.2 5.9E-09 1.3E-13 89.4 21.9 208 5-219 138-357 (518)
31 PRK09782 bacteriophage N4 rece 99.2 7.1E-10 1.5E-14 109.3 18.5 194 42-262 518-721 (987)
32 PRK12370 invasion protein regu 99.2 8.1E-10 1.7E-14 103.8 17.9 149 48-220 319-468 (553)
33 TIGR02917 PEP_TPR_lipo putativ 99.2 1.6E-09 3.6E-14 105.8 19.5 133 74-220 602-763 (899)
34 PF13424 TPR_12: Tetratricopep 99.2 2.9E-10 6.3E-15 78.2 10.2 74 70-143 2-77 (78)
35 PRK11189 lipoprotein NlpI; Pro 99.2 3.2E-09 6.9E-14 92.0 17.8 131 30-179 61-192 (296)
36 PRK11447 cellulose synthase su 99.1 5.6E-09 1.2E-13 106.0 20.2 134 40-185 276-418 (1157)
37 TIGR03302 OM_YfiO outer membra 99.1 9.5E-09 2.1E-13 85.8 17.5 164 6-180 31-231 (235)
38 KOG1173 Anaphase-promoting com 99.1 2.4E-09 5.2E-14 96.2 14.3 173 1-185 324-522 (611)
39 KOG0548 Molecular co-chaperone 99.1 3.8E-08 8.3E-13 88.2 21.7 219 32-263 223-471 (539)
40 KOG1126 DNA-binding cell divis 99.1 1.9E-09 4.2E-14 98.4 13.6 175 27-220 435-618 (638)
41 KOG1155 Anaphase-promoting com 99.1 6.7E-09 1.5E-13 91.5 16.3 163 5-179 346-534 (559)
42 KOG1173 Anaphase-promoting com 99.1 7E-09 1.5E-13 93.3 15.3 175 27-220 326-516 (611)
43 PRK12370 invasion protein regu 99.0 1.3E-08 2.8E-13 95.6 17.8 165 31-220 257-433 (553)
44 PRK04841 transcriptional regul 99.0 2.3E-07 4.9E-12 92.2 27.5 180 39-221 458-640 (903)
45 PF13424 TPR_12: Tetratricopep 99.0 2.8E-09 6E-14 73.3 9.7 72 109-180 2-74 (78)
46 COG2956 Predicted N-acetylgluc 99.0 5.9E-08 1.3E-12 82.2 19.3 184 24-220 46-276 (389)
47 KOG2002 TPR-containing nuclear 99.0 7.8E-08 1.7E-12 91.4 21.7 208 4-218 251-521 (1018)
48 PRK11189 lipoprotein NlpI; Pro 99.0 4.4E-08 9.6E-13 84.9 18.6 150 47-218 40-190 (296)
49 PF13429 TPR_15: Tetratricopep 99.0 6.2E-09 1.3E-13 89.4 12.7 167 27-218 58-239 (280)
50 KOG1941 Acetylcholine receptor 99.0 4.1E-08 8.8E-13 84.4 16.1 147 39-185 128-281 (518)
51 KOG2002 TPR-containing nuclear 98.9 1.9E-07 4.2E-12 88.8 20.4 173 27-220 178-369 (1018)
52 PRK04841 transcriptional regul 98.9 1.1E-06 2.4E-11 87.4 27.0 140 39-179 497-639 (903)
53 PRK15359 type III secretion sy 98.9 2.6E-08 5.7E-13 77.0 11.7 99 76-186 27-126 (144)
54 KOG0547 Translocase of outer m 98.9 1.2E-07 2.6E-12 84.3 17.0 201 36-255 363-574 (606)
55 KOG1129 TPR repeat-containing 98.9 7.1E-08 1.5E-12 81.9 14.5 169 35-220 225-422 (478)
56 PRK15179 Vi polysaccharide bio 98.9 2.2E-07 4.8E-12 88.7 19.5 164 34-219 50-214 (694)
57 PF09976 TPR_21: Tetratricopep 98.9 5.1E-07 1.1E-11 69.8 17.8 136 29-178 8-144 (145)
58 PRK15359 type III secretion sy 98.8 7.8E-08 1.7E-12 74.3 12.2 106 93-220 14-119 (144)
59 KOG1129 TPR repeat-containing 98.8 1.5E-08 3.2E-13 86.0 8.6 119 87-221 339-457 (478)
60 PRK10370 formate-dependent nit 98.8 2.7E-07 5.8E-12 75.2 15.4 117 87-222 54-173 (198)
61 PRK02603 photosystem I assembl 98.8 6.9E-07 1.5E-11 71.1 17.2 95 106-210 29-123 (172)
62 CHL00033 ycf3 photosystem I as 98.8 4.6E-07 9.9E-12 71.8 15.9 118 105-225 28-145 (168)
63 KOG2003 TPR repeat-containing 98.8 1.6E-06 3.4E-11 76.8 20.3 110 87-215 505-614 (840)
64 PRK15363 pathogenicity island 98.8 4.7E-07 1E-11 69.9 14.6 99 110-221 33-131 (157)
65 CHL00033 ycf3 photosystem I as 98.8 4E-07 8.7E-12 72.1 14.5 113 30-145 32-146 (168)
66 PRK10049 pgaA outer membrane p 98.8 5.3E-07 1.2E-11 88.0 17.7 167 39-220 244-420 (765)
67 PRK10049 pgaA outer membrane p 98.7 1.4E-06 3E-11 85.1 20.3 197 27-240 251-472 (765)
68 PF13429 TPR_15: Tetratricopep 98.7 3.4E-07 7.4E-12 78.6 14.2 150 36-201 113-263 (280)
69 PRK15179 Vi polysaccharide bio 98.7 2.6E-07 5.7E-12 88.2 14.5 158 6-181 46-217 (694)
70 KOG0548 Molecular co-chaperone 98.7 2.3E-06 5.1E-11 76.9 18.9 180 27-220 238-453 (539)
71 cd05804 StaR_like StaR_like; a 98.7 1.1E-06 2.4E-11 77.8 15.8 163 39-219 49-212 (355)
72 PF09976 TPR_21: Tetratricopep 98.7 4.7E-06 1E-10 64.4 17.4 134 72-219 11-144 (145)
73 KOG1125 TPR repeat-containing 98.6 1.9E-06 4.2E-11 78.1 16.5 196 3-222 287-527 (579)
74 COG2956 Predicted N-acetylgluc 98.6 1.1E-05 2.4E-10 68.7 19.8 166 40-219 42-240 (389)
75 PRK10370 formate-dependent nit 98.6 9.8E-07 2.1E-11 71.9 13.2 121 46-184 52-176 (198)
76 KOG0547 Translocase of outer m 98.6 1E-06 2.2E-11 78.5 14.1 164 40-222 401-566 (606)
77 PRK02603 photosystem I assembl 98.6 3.3E-06 7.2E-11 67.1 15.5 105 65-178 27-139 (172)
78 PRK10866 outer membrane biogen 98.6 2.1E-05 4.5E-10 66.2 21.0 177 31-218 31-237 (243)
79 TIGR02795 tol_pal_ybgF tol-pal 98.6 1.5E-06 3.2E-11 64.0 11.6 106 74-185 3-109 (119)
80 PF13414 TPR_11: TPR repeat; P 98.6 4.9E-07 1.1E-11 60.3 7.9 64 112-181 3-67 (69)
81 TIGR02795 tol_pal_ybgF tol-pal 98.5 2.2E-06 4.8E-11 63.1 12.1 101 112-219 2-102 (119)
82 cd05804 StaR_like StaR_like; a 98.5 1.3E-06 2.7E-11 77.4 12.6 145 25-179 55-213 (355)
83 PLN03088 SGT1, suppressor of 98.5 9.4E-07 2E-11 78.5 11.5 91 83-185 13-103 (356)
84 TIGR02552 LcrH_SycD type III s 98.5 1E-06 2.2E-11 66.8 10.1 101 73-185 17-118 (135)
85 PF12895 Apc3: Anaphase-promot 98.5 1.2E-06 2.5E-11 61.1 9.5 81 87-178 4-84 (84)
86 PRK15363 pathogenicity island 98.5 5.3E-06 1.1E-10 64.1 13.7 97 74-182 37-133 (157)
87 KOG1125 TPR repeat-containing 98.5 6.1E-07 1.3E-11 81.2 9.7 123 39-173 436-563 (579)
88 TIGR02552 LcrH_SycD type III s 98.5 1.8E-06 3.8E-11 65.5 10.5 97 112-221 17-113 (135)
89 cd00189 TPR Tetratricopeptide 98.5 8.1E-07 1.7E-11 61.4 8.0 93 75-179 2-95 (100)
90 PF13525 YfiO: Outer membrane 98.5 6.1E-05 1.3E-09 61.6 19.4 171 32-213 5-198 (203)
91 KOG0553 TPR repeat-containing 98.5 1.1E-05 2.5E-10 68.0 15.0 105 70-186 78-183 (304)
92 cd00189 TPR Tetratricopeptide 98.5 2.3E-06 5E-11 59.0 9.5 93 114-219 2-94 (100)
93 PF12688 TPR_5: Tetratrico pep 98.4 1.4E-05 3.1E-10 59.5 13.6 115 113-241 2-116 (120)
94 PF12895 Apc3: Anaphase-promot 98.4 2.8E-06 6.1E-11 59.1 9.3 83 125-219 2-84 (84)
95 PRK10866 outer membrane biogen 98.4 6.3E-05 1.4E-09 63.3 19.0 161 7-178 31-238 (243)
96 PRK10803 tol-pal system protei 98.4 5.6E-06 1.2E-10 70.3 12.7 106 74-185 144-250 (263)
97 PRK14574 hmsH outer membrane p 98.4 1.1E-05 2.3E-10 78.8 15.9 136 28-182 30-166 (822)
98 PLN02789 farnesyltranstransfer 98.4 0.00013 2.8E-09 63.8 21.2 197 41-262 79-317 (320)
99 PF12688 TPR_5: Tetratrico pep 98.4 1.4E-05 3.1E-10 59.4 12.9 100 75-180 3-103 (120)
100 PRK14720 transcript cleavage f 98.4 1.5E-05 3.3E-10 77.5 16.0 62 75-143 118-180 (906)
101 COG5010 TadD Flp pilus assembl 98.4 6.9E-06 1.5E-10 67.9 11.6 155 39-218 72-227 (257)
102 PF13525 YfiO: Outer membrane 98.4 8.6E-05 1.9E-09 60.7 18.2 155 6-171 3-197 (203)
103 PF13414 TPR_11: TPR repeat; P 98.4 7.2E-07 1.6E-11 59.5 4.8 64 73-142 3-68 (69)
104 PLN02789 farnesyltranstransfer 98.4 8.6E-05 1.9E-09 64.9 18.9 140 25-185 32-175 (320)
105 PF04190 DUF410: Protein of un 98.3 0.00068 1.5E-08 57.6 23.6 207 27-264 4-240 (260)
106 KOG2076 RNA polymerase III tra 98.3 6E-05 1.3E-09 71.8 18.5 172 28-221 134-308 (895)
107 PF13432 TPR_16: Tetratricopep 98.3 2.4E-06 5.3E-11 56.2 6.8 63 117-185 2-64 (65)
108 PRK14574 hmsH outer membrane p 98.3 4.3E-05 9.2E-10 74.7 18.1 165 27-217 48-227 (822)
109 KOG0550 Molecular chaperone (D 98.3 1.7E-05 3.7E-10 69.6 13.5 146 114-262 205-367 (486)
110 PLN03218 maturation of RBCL 1; 98.3 0.00028 6E-09 71.0 23.9 211 5-236 523-775 (1060)
111 TIGR00540 hemY_coli hemY prote 98.3 0.00016 3.4E-09 65.7 20.6 107 112-226 263-403 (409)
112 PLN03077 Protein ECB2; Provisi 98.3 0.0011 2.3E-08 66.0 27.8 115 114-238 556-680 (857)
113 PLN03081 pentatricopeptide (PP 98.3 0.00057 1.2E-08 66.3 24.8 198 27-239 273-518 (697)
114 KOG3617 WD40 and TPR repeat-co 98.3 0.0001 2.2E-09 69.9 18.3 143 78-220 972-1172(1416)
115 KOG0553 TPR repeat-containing 98.3 9.2E-06 2E-10 68.5 10.6 98 110-220 79-176 (304)
116 PRK10803 tol-pal system protei 98.3 2.4E-05 5.1E-10 66.5 13.2 100 113-219 143-243 (263)
117 KOG0543 FKBP-type peptidyl-pro 98.3 1.7E-05 3.8E-10 69.5 12.1 110 70-185 205-324 (397)
118 PLN03088 SGT1, suppressor of 98.3 1.5E-05 3.3E-10 70.9 12.1 93 115-220 5-97 (356)
119 KOG0550 Molecular chaperone (D 98.2 2.1E-05 4.5E-10 69.0 12.3 191 40-247 176-373 (486)
120 KOG2076 RNA polymerase III tra 98.2 0.00037 8.1E-09 66.5 21.4 83 7-100 138-235 (895)
121 TIGR00540 hemY_coli hemY prote 98.2 0.00044 9.6E-09 62.7 21.2 21 200-220 270-290 (409)
122 KOG0543 FKBP-type peptidyl-pro 98.2 3.5E-05 7.5E-10 67.6 13.1 134 34-179 209-353 (397)
123 PRK10747 putative protoheme IX 98.2 0.00011 2.4E-09 66.4 16.8 156 14-180 83-291 (398)
124 PLN03218 maturation of RBCL 1; 98.2 0.00056 1.2E-08 68.8 22.8 129 75-219 581-710 (1060)
125 KOG4555 TPR repeat-containing 98.2 4.1E-05 8.9E-10 57.0 11.1 99 73-179 43-142 (175)
126 PRK14720 transcript cleavage f 98.2 0.00014 3.1E-09 70.8 17.5 143 25-185 26-182 (906)
127 PRK15331 chaperone protein Sic 98.1 8.8E-05 1.9E-09 57.7 12.3 99 108-219 33-131 (165)
128 KOG3060 Uncharacterized conser 98.1 0.00023 5E-09 58.9 15.2 125 42-183 95-222 (289)
129 PLN03081 pentatricopeptide (PP 98.1 0.00061 1.3E-08 66.1 20.9 34 27-60 172-216 (697)
130 PF09986 DUF2225: Uncharacteri 98.1 9.7E-05 2.1E-09 60.8 12.9 94 87-180 92-193 (214)
131 PRK10747 putative protoheme IX 98.1 0.0019 4.1E-08 58.4 22.1 134 28-179 80-214 (398)
132 KOG4555 TPR repeat-containing 98.0 0.00026 5.6E-09 52.8 11.9 101 33-141 43-144 (175)
133 PF12862 Apc5: Anaphase-promot 98.0 0.00016 3.5E-09 51.4 10.7 84 79-162 5-91 (94)
134 PRK10153 DNA-binding transcrip 98.0 0.00031 6.6E-09 65.4 14.9 143 27-186 334-487 (517)
135 KOG3024 Uncharacterized conser 98.0 0.0084 1.8E-07 50.5 22.3 231 12-264 6-282 (312)
136 KOG1127 TPR repeat-containing 97.9 0.00026 5.7E-09 68.3 13.9 128 79-218 568-696 (1238)
137 PLN03077 Protein ECB2; Provisi 97.9 0.0049 1.1E-07 61.3 23.6 61 153-219 555-615 (857)
138 KOG3060 Uncharacterized conser 97.9 0.0032 6.9E-08 52.3 18.2 165 31-220 50-218 (289)
139 PF10345 Cohesin_load: Cohesin 97.9 0.02 4.4E-07 54.7 26.2 223 5-228 30-260 (608)
140 KOG1128 Uncharacterized conser 97.9 0.00043 9.3E-09 64.9 14.0 111 92-220 470-580 (777)
141 COG1729 Uncharacterized protei 97.9 0.00018 4E-09 60.2 10.5 98 115-219 144-241 (262)
142 COG5010 TadD Flp pilus assembl 97.9 0.00047 1E-08 57.2 12.7 115 87-220 81-195 (257)
143 KOG1174 Anaphase-promoting com 97.8 0.0076 1.7E-07 53.4 20.4 168 80-259 308-512 (564)
144 PF13432 TPR_16: Tetratricopep 97.8 1.9E-05 4E-10 51.9 3.2 59 79-143 3-62 (65)
145 PLN03098 LPA1 LOW PSII ACCUMUL 97.8 0.00011 2.4E-09 65.8 8.8 67 72-141 74-141 (453)
146 PF12569 NARP1: NMDA receptor- 97.8 0.0051 1.1E-07 57.3 20.0 165 69-245 190-369 (517)
147 COG1729 Uncharacterized protei 97.8 0.00022 4.7E-09 59.8 10.0 106 75-186 144-249 (262)
148 KOG4162 Predicted calmodulin-b 97.8 0.00062 1.3E-08 64.1 13.7 145 29-191 646-793 (799)
149 KOG2581 26S proteasome regulat 97.8 0.018 4E-07 50.9 21.8 215 33-252 124-354 (493)
150 KOG4340 Uncharacterized conser 97.8 0.0013 2.8E-08 55.9 14.0 139 39-185 50-211 (459)
151 KOG0495 HAT repeat protein [RN 97.7 0.0056 1.2E-07 57.2 18.8 85 87-184 633-717 (913)
152 PF13512 TPR_18: Tetratricopep 97.7 0.0012 2.6E-08 50.2 12.3 89 112-207 10-98 (142)
153 KOG3617 WD40 and TPR repeat-co 97.7 0.0015 3.3E-08 62.2 15.3 145 27-178 814-993 (1416)
154 KOG1127 TPR repeat-containing 97.7 0.00055 1.2E-08 66.2 12.4 148 48-218 473-621 (1238)
155 KOG1174 Anaphase-promoting com 97.7 0.0026 5.5E-08 56.3 15.6 140 26-185 313-504 (564)
156 PF13176 TPR_7: Tetratricopept 97.7 8.6E-05 1.9E-09 42.7 4.5 33 114-146 1-33 (36)
157 KOG1156 N-terminal acetyltrans 97.7 0.002 4.3E-08 59.8 15.5 162 33-220 8-170 (700)
158 PF13371 TPR_9: Tetratricopept 97.7 0.00016 3.4E-09 48.5 6.6 61 119-185 2-62 (73)
159 KOG1156 N-terminal acetyltrans 97.7 0.00082 1.8E-08 62.2 12.9 128 73-219 8-135 (700)
160 KOG2376 Signal recognition par 97.7 0.015 3.2E-07 53.7 20.4 134 77-219 83-250 (652)
161 PF04733 Coatomer_E: Coatomer 97.7 0.00039 8.5E-09 60.0 10.1 150 38-219 107-262 (290)
162 KOG0624 dsRNA-activated protei 97.7 0.0081 1.8E-07 52.1 17.6 107 64-183 30-137 (504)
163 KOG4234 TPR repeat-containing 97.7 0.00079 1.7E-08 54.0 10.7 125 8-144 72-200 (271)
164 KOG3616 Selective LIM binding 97.7 0.0018 4E-08 61.0 14.5 106 72-178 660-791 (1636)
165 PF09295 ChAPs: ChAPs (Chs5p-A 97.7 0.0016 3.4E-08 58.5 13.8 150 8-178 138-294 (395)
166 KOG3081 Vesicle coat complex C 97.7 0.0071 1.5E-07 50.6 16.5 174 39-242 114-296 (299)
167 KOG0624 dsRNA-activated protei 97.6 0.0084 1.8E-07 52.0 17.3 97 78-180 111-217 (504)
168 KOG4162 Predicted calmodulin-b 97.6 0.0015 3.3E-08 61.6 13.9 124 78-220 655-781 (799)
169 PF12968 DUF3856: Domain of Un 97.6 0.0047 1E-07 45.3 13.0 109 71-179 5-127 (144)
170 PF09986 DUF2225: Uncharacteri 97.6 0.0017 3.6E-08 53.5 12.1 101 45-145 89-198 (214)
171 KOG1128 Uncharacterized conser 97.6 0.0017 3.6E-08 61.1 13.2 116 86-220 499-614 (777)
172 KOG4234 TPR repeat-containing 97.6 0.0041 9E-08 50.0 13.6 103 75-184 97-200 (271)
173 PLN03098 LPA1 LOW PSII ACCUMUL 97.6 0.00048 1E-08 61.9 9.3 68 31-101 73-141 (453)
174 PF04184 ST7: ST7 protein; In 97.6 0.0034 7.4E-08 56.9 14.5 172 81-265 177-393 (539)
175 KOG0495 HAT repeat protein [RN 97.6 0.0022 4.9E-08 59.7 13.5 147 48-220 633-780 (913)
176 PF14559 TPR_19: Tetratricopep 97.6 0.00011 2.3E-09 48.6 3.9 55 124-184 3-57 (68)
177 KOG3616 Selective LIM binding 97.5 0.006 1.3E-07 57.7 16.1 112 34-146 662-805 (1636)
178 PF00515 TPR_1: Tetratricopept 97.5 0.00024 5.3E-09 40.0 4.4 32 112-143 1-32 (34)
179 COG4783 Putative Zn-dependent 97.5 0.0033 7.2E-08 56.6 13.2 130 71-219 305-434 (484)
180 PRK15331 chaperone protein Sic 97.5 0.0012 2.6E-08 51.5 9.2 94 75-180 40-133 (165)
181 PF12862 Apc5: Anaphase-promot 97.5 0.0028 6.1E-08 45.0 10.6 80 44-123 9-92 (94)
182 PF10602 RPN7: 26S proteasome 97.4 0.037 7.9E-07 44.2 17.4 128 50-180 13-141 (177)
183 PF09295 ChAPs: ChAPs (Chs5p-A 97.4 0.0033 7.1E-08 56.5 12.3 110 87-218 184-293 (395)
184 KOG2376 Signal recognition par 97.4 0.024 5.2E-07 52.4 17.6 73 113-185 176-257 (652)
185 PF07719 TPR_2: Tetratricopept 97.3 0.00052 1.1E-08 38.5 4.5 32 112-143 1-32 (34)
186 PF11817 Foie-gras_1: Foie gra 97.3 0.0058 1.2E-07 51.6 12.4 92 87-178 153-244 (247)
187 KOG2300 Uncharacterized conser 97.3 0.094 2E-06 47.6 20.1 186 27-220 41-239 (629)
188 PF10345 Cohesin_load: Cohesin 97.3 0.19 4.1E-06 48.1 25.2 164 50-219 38-205 (608)
189 PF12968 DUF3856: Domain of Un 97.2 0.013 2.9E-07 43.0 11.7 101 45-145 21-133 (144)
190 KOG2047 mRNA splicing factor [ 97.2 0.021 4.6E-07 53.3 15.5 181 43-239 521-718 (835)
191 PF12569 NARP1: NMDA receptor- 97.2 0.012 2.6E-07 54.8 14.2 99 109-220 191-289 (517)
192 PF13371 TPR_9: Tetratricopept 97.2 0.0012 2.6E-08 44.1 5.7 58 81-144 3-61 (73)
193 PF13181 TPR_8: Tetratricopept 97.2 0.0012 2.6E-08 37.1 4.7 32 112-143 1-32 (34)
194 PF03704 BTAD: Bacterial trans 97.2 0.035 7.6E-07 42.5 14.5 99 119-224 13-127 (146)
195 COG4105 ComL DNA uptake lipopr 97.1 0.12 2.6E-06 43.3 19.1 163 7-180 33-232 (254)
196 KOG4340 Uncharacterized conser 97.1 0.028 6.1E-07 48.0 14.2 161 46-219 23-204 (459)
197 COG0457 NrfG FOG: TPR repeat [ 97.1 0.096 2.1E-06 41.2 17.6 166 35-219 61-228 (291)
198 KOG0551 Hsp90 co-chaperone CNS 97.1 0.029 6.3E-07 48.5 14.0 114 58-179 66-180 (390)
199 PF10300 DUF3808: Protein of u 97.0 0.0086 1.9E-07 55.3 11.7 119 87-219 248-373 (468)
200 COG2976 Uncharacterized protei 97.0 0.048 1E-06 43.7 14.1 101 72-182 88-189 (207)
201 COG4700 Uncharacterized protei 97.0 0.12 2.5E-06 41.4 16.0 100 76-184 92-192 (251)
202 PF14559 TPR_19: Tetratricopep 97.0 0.0023 4.9E-08 42.1 5.8 50 163-219 2-51 (68)
203 COG0457 NrfG FOG: TPR repeat [ 97.0 0.092 2E-06 41.4 16.3 164 36-219 98-262 (291)
204 COG2976 Uncharacterized protei 97.0 0.063 1.4E-06 43.0 14.5 107 103-220 80-186 (207)
205 PF13176 TPR_7: Tetratricopept 97.0 0.0017 3.8E-08 37.2 4.4 26 154-179 1-26 (36)
206 PF10602 RPN7: 26S proteasome 97.0 0.03 6.5E-07 44.7 13.0 133 7-143 11-144 (177)
207 PF13374 TPR_10: Tetratricopep 96.9 0.0024 5.2E-08 37.4 4.8 34 112-145 2-35 (42)
208 PF00515 TPR_1: Tetratricopept 96.9 0.0021 4.7E-08 36.0 4.3 32 152-183 1-32 (34)
209 PRK10153 DNA-binding transcrip 96.9 0.025 5.5E-07 52.8 13.7 116 87-220 357-480 (517)
210 KOG1464 COP9 signalosome, subu 96.9 0.21 4.5E-06 42.3 18.4 147 27-178 24-171 (440)
211 PF07719 TPR_2: Tetratricopept 96.9 0.0027 5.8E-08 35.4 4.6 32 152-183 1-32 (34)
212 COG5159 RPN6 26S proteasome re 96.9 0.23 4.9E-06 42.4 23.1 140 38-178 50-191 (421)
213 PRK11906 transcriptional regul 96.9 0.041 8.9E-07 49.8 14.0 139 29-182 250-402 (458)
214 PF13512 TPR_18: Tetratricopep 96.8 0.035 7.6E-07 42.3 11.3 106 74-185 12-132 (142)
215 COG4783 Putative Zn-dependent 96.7 0.098 2.1E-06 47.4 15.0 119 42-178 315-434 (484)
216 PF03704 BTAD: Bacterial trans 96.7 0.069 1.5E-06 40.8 12.5 61 113-179 63-123 (146)
217 PF04733 Coatomer_E: Coatomer 96.6 0.031 6.6E-07 48.3 11.0 154 76-255 105-276 (290)
218 KOG3785 Uncharacterized conser 96.6 0.2 4.3E-06 44.0 15.6 59 155-220 154-212 (557)
219 KOG4642 Chaperone-dependent E3 96.6 0.062 1.3E-06 44.5 11.9 80 87-178 25-104 (284)
220 COG2909 MalT ATP-dependent tra 96.6 0.8 1.7E-05 44.7 20.8 184 33-218 497-684 (894)
221 PF12739 TRAPPC-Trs85: ER-Golg 96.5 0.44 9.5E-06 43.4 18.5 174 35-222 210-399 (414)
222 KOG3785 Uncharacterized conser 96.5 0.33 7.3E-06 42.6 16.2 161 12-179 20-212 (557)
223 PF13174 TPR_6: Tetratricopept 96.4 0.006 1.3E-07 33.7 3.8 30 154-183 2-31 (33)
224 KOG4648 Uncharacterized conser 96.4 0.011 2.4E-07 51.2 6.8 95 38-144 102-197 (536)
225 KOG0551 Hsp90 co-chaperone CNS 96.4 0.024 5.1E-07 49.0 8.6 111 27-145 75-186 (390)
226 COG2909 MalT ATP-dependent tra 96.4 1.1 2.4E-05 43.8 22.8 210 5-220 431-645 (894)
227 COG4700 Uncharacterized protei 96.3 0.11 2.3E-06 41.6 11.4 123 80-219 63-186 (251)
228 KOG2047 mRNA splicing factor [ 96.3 0.63 1.4E-05 44.0 18.0 38 31-68 246-283 (835)
229 PF11817 Foie-gras_1: Foie gra 96.3 0.13 2.8E-06 43.4 12.9 92 46-137 151-243 (247)
230 COG4235 Cytochrome c biogenesi 96.3 0.2 4.2E-06 42.9 13.7 124 5-147 135-262 (287)
231 KOG1463 26S proteasome regulat 96.3 0.68 1.5E-05 40.4 23.5 224 38-262 53-331 (411)
232 KOG2796 Uncharacterized conser 96.3 0.58 1.2E-05 39.6 18.0 135 74-220 178-313 (366)
233 PF13181 TPR_8: Tetratricopept 96.3 0.015 3.3E-07 32.3 4.9 31 153-183 2-32 (34)
234 KOG4642 Chaperone-dependent E3 96.2 0.016 3.5E-07 47.8 6.6 103 33-147 10-113 (284)
235 PF13428 TPR_14: Tetratricopep 96.2 0.016 3.4E-07 34.7 5.1 30 114-143 3-32 (44)
236 COG4235 Cytochrome c biogenesi 96.2 0.13 2.8E-06 44.0 12.0 97 112-221 156-255 (287)
237 KOG1070 rRNA processing protei 96.2 0.91 2E-05 46.5 19.3 158 43-220 1468-1627(1710)
238 KOG1070 rRNA processing protei 96.1 1.1 2.4E-05 46.0 19.6 151 46-220 1510-1661(1710)
239 PF13431 TPR_17: Tetratricopep 96.1 0.0048 1E-07 34.8 2.3 33 134-172 1-33 (34)
240 PRK11906 transcriptional regul 96.1 0.24 5.2E-06 45.0 13.9 118 87-220 273-399 (458)
241 PF04184 ST7: ST7 protein; In 96.1 0.4 8.6E-06 43.9 15.0 123 44-178 179-321 (539)
242 COG4105 ComL DNA uptake lipopr 96.0 0.74 1.6E-05 38.6 19.4 173 31-214 33-225 (254)
243 PF13431 TPR_17: Tetratricopep 95.9 0.0038 8.2E-08 35.3 1.1 34 94-133 1-34 (34)
244 PF13428 TPR_14: Tetratricopep 95.9 0.018 4E-07 34.4 4.3 34 153-186 2-35 (44)
245 COG4785 NlpI Lipoprotein NlpI, 95.8 0.077 1.7E-06 43.4 8.6 27 153-179 238-264 (297)
246 PF10300 DUF3808: Protein of u 95.8 0.25 5.4E-06 45.7 13.1 99 38-143 272-378 (468)
247 KOG1550 Extracellular protein 95.8 0.64 1.4E-05 44.0 16.0 142 49-219 228-390 (552)
248 KOG3081 Vesicle coat complex C 95.7 1.1 2.3E-05 38.0 15.9 86 120-220 145-234 (299)
249 KOG0545 Aryl-hydrocarbon recep 95.7 0.49 1.1E-05 39.5 13.0 104 110-220 176-291 (329)
250 PF08626 TRAPPC9-Trs120: Trans 95.7 0.44 9.5E-06 49.3 15.7 149 33-181 242-474 (1185)
251 PF13174 TPR_6: Tetratricopept 95.6 0.02 4.3E-07 31.5 3.4 31 114-144 2-32 (33)
252 PF05843 Suf: Suppressor of fo 95.6 0.23 5.1E-06 42.6 11.4 131 76-222 4-136 (280)
253 PF13374 TPR_10: Tetratricopep 95.5 0.043 9.3E-07 31.8 4.8 30 152-181 2-31 (42)
254 COG0790 FOG: TPR repeat, SEL1 95.5 1.1 2.4E-05 38.4 15.4 134 26-180 54-219 (292)
255 KOG4648 Uncharacterized conser 95.4 0.075 1.6E-06 46.3 7.6 98 76-185 100-198 (536)
256 COG3071 HemY Uncharacterized e 95.4 0.57 1.2E-05 41.6 13.0 125 34-179 264-388 (400)
257 KOG0686 COP9 signalosome, subu 95.4 0.86 1.9E-05 40.7 14.0 159 95-257 133-314 (466)
258 KOG2908 26S proteasome regulat 95.3 1.8 3.9E-05 37.8 22.7 190 53-247 58-265 (380)
259 KOG2041 WD40 repeat protein [G 95.3 1.2 2.6E-05 42.6 15.4 109 69-178 792-936 (1189)
260 KOG0545 Aryl-hydrocarbon recep 95.2 0.27 5.9E-06 41.0 9.9 108 30-143 175-295 (329)
261 KOG2610 Uncharacterized conser 95.2 0.44 9.5E-06 41.6 11.4 150 24-183 113-278 (491)
262 KOG2471 TPR repeat-containing 95.0 0.054 1.2E-06 49.2 5.7 88 111-205 282-381 (696)
263 PF11207 DUF2989: Protein of u 94.7 1.2 2.6E-05 36.1 12.1 60 110-172 139-198 (203)
264 PF04190 DUF410: Protein of un 94.6 2.5 5.4E-05 35.9 18.5 114 45-178 2-116 (260)
265 smart00028 TPR Tetratricopepti 94.6 0.043 9.4E-07 28.9 2.8 28 114-141 3-30 (34)
266 KOG2300 Uncharacterized conser 94.6 3.7 7.9E-05 37.8 19.4 153 68-225 41-199 (629)
267 PF10516 SHNi-TPR: SHNi-TPR; 94.6 0.073 1.6E-06 30.8 3.7 32 113-144 2-33 (38)
268 KOG1839 Uncharacterized protei 94.6 0.83 1.8E-05 46.4 13.1 151 28-178 968-1125(1236)
269 KOG2581 26S proteasome regulat 94.5 3.4 7.3E-05 37.1 16.9 172 34-220 170-344 (493)
270 KOG4322 Anaphase-promoting com 94.5 2.7 5.8E-05 38.0 14.8 123 24-146 264-387 (482)
271 PF06552 TOM20_plant: Plant sp 94.5 0.13 2.8E-06 40.8 6.0 52 88-145 51-106 (186)
272 PF05843 Suf: Suppressor of fo 94.3 0.55 1.2E-05 40.3 10.3 130 37-181 5-136 (280)
273 KOG2796 Uncharacterized conser 94.2 2.2 4.9E-05 36.1 13.1 135 40-185 184-319 (366)
274 PF06552 TOM20_plant: Plant sp 93.7 2.8 6.1E-05 33.4 12.2 85 152-243 25-125 (186)
275 PF12739 TRAPPC-Trs85: ER-Golg 93.5 4.8 0.0001 36.7 15.3 128 76-203 211-351 (414)
276 smart00028 TPR Tetratricopepti 93.5 0.15 3.2E-06 26.7 3.5 28 153-180 2-29 (34)
277 KOG2471 TPR repeat-containing 93.4 0.32 7E-06 44.4 7.2 116 41-163 248-380 (696)
278 cd02681 MIT_calpain7_1 MIT: do 93.2 1 2.2E-05 30.5 7.8 34 111-144 5-38 (76)
279 PF10579 Rapsyn_N: Rapsyn N-te 93.0 1.5 3.2E-05 29.8 8.2 58 87-147 21-78 (80)
280 PF04053 Coatomer_WDAD: Coatom 92.9 2.6 5.6E-05 38.8 12.5 74 152-240 347-427 (443)
281 PF10516 SHNi-TPR: SHNi-TPR; 92.7 0.28 6E-06 28.4 3.9 28 153-180 2-29 (38)
282 COG0790 FOG: TPR repeat, SEL1 92.6 6 0.00013 33.8 15.8 145 45-219 53-217 (292)
283 KOG1550 Extracellular protein 92.3 2.8 6E-05 39.8 12.3 147 88-252 228-398 (552)
284 KOG1839 Uncharacterized protei 91.9 14 0.00031 38.0 16.9 185 30-218 930-1124(1236)
285 KOG4507 Uncharacterized conser 91.7 0.12 2.6E-06 48.1 2.3 98 77-185 610-709 (886)
286 PF14853 Fis1_TPR_C: Fis1 C-te 91.7 0.48 1E-05 29.6 4.4 34 153-186 2-35 (53)
287 COG3071 HemY Uncharacterized e 91.5 9.9 0.00021 34.0 20.8 192 40-249 91-328 (400)
288 KOG1538 Uncharacterized conser 91.4 5.1 0.00011 38.2 12.5 28 152-179 804-831 (1081)
289 KOG3364 Membrane protein invol 91.4 2.1 4.6E-05 32.4 8.3 73 110-186 30-105 (149)
290 KOG4507 Uncharacterized conser 91.4 0.35 7.7E-06 45.1 5.0 92 117-220 612-703 (886)
291 KOG2041 WD40 repeat protein [G 91.3 15 0.00032 35.6 22.9 28 34-61 797-824 (1189)
292 KOG1915 Cell cycle control pro 91.2 12 0.00026 34.6 14.1 162 45-220 334-534 (677)
293 KOG1915 Cell cycle control pro 91.1 13 0.00027 34.4 23.3 134 118-257 328-476 (677)
294 PF08631 SPO22: Meiosis protei 91.0 9.3 0.0002 32.7 19.4 83 87-169 8-101 (278)
295 COG5091 SGT1 Suppressor of G2 90.7 1.4 3.1E-05 37.2 7.5 94 73-166 36-133 (368)
296 KOG4814 Uncharacterized conser 90.6 3.8 8.2E-05 39.0 10.8 99 114-220 357-455 (872)
297 PF04212 MIT: MIT (microtubule 90.5 0.92 2E-05 29.9 5.3 33 112-144 5-37 (69)
298 KOG1308 Hsp70-interacting prot 90.4 0.13 2.8E-06 44.8 1.3 120 42-173 123-243 (377)
299 KOG1464 COP9 signalosome, subu 90.3 6.3 0.00014 33.7 10.9 57 87-145 42-98 (440)
300 PF07721 TPR_4: Tetratricopept 89.9 0.45 9.8E-06 24.7 2.7 22 155-176 4-25 (26)
301 PF04781 DUF627: Protein of un 89.9 6.1 0.00013 28.8 9.7 91 42-141 5-107 (111)
302 KOG1497 COP9 signalosome, subu 89.8 6.8 0.00015 34.1 11.0 106 31-137 101-209 (399)
303 PRK10941 hypothetical protein; 89.8 2.5 5.4E-05 36.1 8.5 80 101-186 170-249 (269)
304 PF07721 TPR_4: Tetratricopept 89.7 0.49 1.1E-05 24.6 2.7 24 113-136 2-25 (26)
305 PRK13184 pknD serine/threonine 89.6 1.2 2.5E-05 44.7 7.2 92 91-186 487-586 (932)
306 PF03635 Vps35: Vacuolar prote 89.6 23 0.0005 35.1 16.6 120 28-147 587-720 (762)
307 KOG0985 Vesicle coat protein c 89.5 26 0.00057 35.6 22.7 25 154-178 1222-1246(1666)
308 cd02682 MIT_AAA_Arch MIT: doma 89.4 1.2 2.7E-05 30.0 5.1 35 111-145 5-39 (75)
309 PF15015 NYD-SP12_N: Spermatog 89.4 9.6 0.00021 34.5 11.9 114 27-146 170-296 (569)
310 COG4785 NlpI Lipoprotein NlpI, 88.6 13 0.00028 30.8 11.9 99 69-179 61-160 (297)
311 cd02683 MIT_1 MIT: domain cont 88.5 1.3 2.8E-05 30.1 4.8 33 112-144 6-38 (77)
312 smart00745 MIT Microtubule Int 88.2 1.8 3.9E-05 29.1 5.4 33 112-144 8-40 (77)
313 KOG4814 Uncharacterized conser 87.7 27 0.00058 33.5 17.8 99 39-144 361-460 (872)
314 PF11207 DUF2989: Protein of u 87.7 2 4.3E-05 34.8 6.1 60 72-133 140-199 (203)
315 cd02680 MIT_calpain7_2 MIT: do 87.5 4.4 9.5E-05 27.3 6.8 28 122-149 16-43 (75)
316 cd02678 MIT_VPS4 MIT: domain c 87.4 2.1 4.5E-05 28.8 5.3 31 114-144 8-38 (75)
317 PF08631 SPO22: Meiosis protei 87.4 17 0.00038 31.0 16.7 131 45-180 5-149 (278)
318 COG5187 RPN7 26S proteasome re 87.1 19 0.00041 31.1 16.6 131 46-179 88-219 (412)
319 PRK13184 pknD serine/threonine 87.0 2.1 4.5E-05 43.0 7.1 99 41-146 483-586 (932)
320 cd02679 MIT_spastin MIT: domai 87.0 2 4.2E-05 29.3 5.0 36 110-145 6-41 (79)
321 cd02677 MIT_SNX15 MIT: domain 86.6 2 4.4E-05 29.0 4.8 30 115-144 9-38 (75)
322 KOG0687 26S proteasome regulat 86.6 22 0.00047 31.2 17.4 130 48-180 79-209 (393)
323 PF04053 Coatomer_WDAD: Coatom 86.2 27 0.00058 32.2 13.4 18 37-54 299-316 (443)
324 PF08626 TRAPPC9-Trs120: Trans 85.7 20 0.00043 37.5 13.7 54 70-123 239-293 (1185)
325 cd02656 MIT MIT: domain contai 85.3 3 6.4E-05 27.9 5.2 31 114-144 8-38 (75)
326 KOG3824 Huntingtin interacting 85.3 1.4 3.1E-05 38.1 4.3 70 69-144 113-182 (472)
327 PF10952 DUF2753: Protein of u 85.2 10 0.00022 28.3 8.1 56 87-142 16-80 (140)
328 PF10373 EST1_DNA_bind: Est1 D 85.1 1.9 4E-05 36.6 5.2 43 91-139 1-43 (278)
329 PF13281 DUF4071: Domain of un 84.9 18 0.00039 32.5 11.3 142 27-180 155-333 (374)
330 KOG3824 Huntingtin interacting 84.3 9.5 0.00021 33.2 8.8 62 117-185 122-183 (472)
331 KOG2053 Mitochondrial inherita 84.2 7.6 0.00016 38.3 9.1 57 119-181 50-106 (932)
332 PF02259 FAT: FAT domain; Int 84.0 28 0.0006 30.3 16.5 110 71-182 144-288 (352)
333 KOG1497 COP9 signalosome, subu 83.9 29 0.00063 30.4 16.1 74 112-185 144-217 (399)
334 COG4649 Uncharacterized protei 83.4 21 0.00046 28.5 14.8 98 113-219 95-193 (221)
335 PF09670 Cas_Cas02710: CRISPR- 83.0 35 0.00076 30.7 15.1 58 40-101 138-198 (379)
336 PF10579 Rapsyn_N: Rapsyn N-te 82.6 13 0.00028 25.4 8.8 64 113-179 7-70 (80)
337 cd02684 MIT_2 MIT: domain cont 82.6 4.3 9.3E-05 27.3 5.1 28 117-144 11-38 (75)
338 KOG3807 Predicted membrane pro 82.3 35 0.00075 30.2 14.8 27 153-179 276-302 (556)
339 PF10373 EST1_DNA_bind: Est1 D 81.8 4.7 0.0001 34.1 6.4 43 131-179 1-43 (278)
340 cd02680 MIT_calpain7_2 MIT: do 81.6 5.8 0.00013 26.7 5.4 37 28-65 2-38 (75)
341 COG4976 Predicted methyltransf 81.5 8.6 0.00019 32.0 7.3 58 122-185 5-62 (287)
342 KOG4322 Anaphase-promoting com 81.5 42 0.00092 30.6 12.3 146 34-179 314-469 (482)
343 PF14853 Fis1_TPR_C: Fis1 C-te 81.5 4.5 9.8E-05 25.2 4.5 32 114-145 3-34 (53)
344 PF15015 NYD-SP12_N: Spermatog 81.2 16 0.00035 33.2 9.3 100 74-179 178-289 (569)
345 KOG1538 Uncharacterized conser 80.7 57 0.0012 31.6 14.9 17 161-177 782-798 (1081)
346 PF04212 MIT: MIT (microtubule 80.4 7.8 0.00017 25.3 5.7 33 31-64 4-36 (69)
347 TIGR03504 FimV_Cterm FimV C-te 80.1 3.6 7.7E-05 24.6 3.5 24 156-179 3-26 (44)
348 KOG0687 26S proteasome regulat 79.5 43 0.00094 29.5 16.3 130 5-144 84-213 (393)
349 PF02259 FAT: FAT domain; Int 79.4 41 0.0009 29.2 20.0 75 106-182 140-214 (352)
350 cd02683 MIT_1 MIT: domain cont 79.0 8.1 0.00018 26.1 5.5 34 30-64 4-37 (77)
351 KOG2062 26S proteasome regulat 78.9 57 0.0012 32.0 12.6 160 39-220 65-237 (929)
352 PF13281 DUF4071: Domain of un 78.5 50 0.0011 29.7 12.2 63 74-138 142-208 (374)
353 cd02684 MIT_2 MIT: domain cont 78.5 9.2 0.0002 25.7 5.6 35 29-64 3-37 (75)
354 KOG0376 Serine-threonine phosp 78.2 3.1 6.8E-05 38.0 4.1 87 87-185 19-105 (476)
355 KOG1938 Protein with predicted 78.1 16 0.00035 36.4 9.1 116 22-139 260-382 (960)
356 KOG1920 IkappaB kinase complex 77.6 91 0.002 32.2 14.1 24 156-179 956-979 (1265)
357 cd02679 MIT_spastin MIT: domai 77.6 8.4 0.00018 26.3 5.2 34 71-104 6-40 (79)
358 KOG4014 Uncharacterized conser 77.3 10 0.00022 30.5 6.2 80 54-141 49-141 (248)
359 PRK10941 hypothetical protein; 76.7 34 0.00073 29.3 9.8 85 148-242 177-262 (269)
360 PF12854 PPR_1: PPR repeat 76.7 5.8 0.00013 21.9 3.6 25 153-177 8-32 (34)
361 cd02678 MIT_VPS4 MIT: domain c 76.1 11 0.00024 25.2 5.5 34 30-64 4-37 (75)
362 PF10952 DUF2753: Protein of u 76.0 30 0.00065 25.8 8.3 65 115-179 4-77 (140)
363 PF00244 14-3-3: 14-3-3 protei 75.9 45 0.00098 27.8 16.8 78 106-183 110-200 (236)
364 KOG0376 Serine-threonine phosp 75.7 3.9 8.4E-05 37.4 4.0 92 115-219 7-98 (476)
365 KOG0985 Vesicle coat protein c 75.4 1E+02 0.0022 31.7 19.5 84 42-132 1288-1374(1666)
366 PF07720 TPR_3: Tetratricopept 74.9 8.1 0.00018 21.9 3.9 23 154-176 3-25 (36)
367 KOG1463 26S proteasome regulat 74.9 61 0.0013 28.8 16.0 134 40-173 135-270 (411)
368 KOG1308 Hsp70-interacting prot 74.2 2 4.4E-05 37.6 1.8 90 79-180 121-210 (377)
369 smart00671 SEL1 Sel1-like repe 73.6 7.4 0.00016 21.2 3.6 14 127-140 20-33 (36)
370 cd02681 MIT_calpain7_1 MIT: do 73.1 26 0.00056 23.7 7.9 18 87-104 21-38 (76)
371 KOG0276 Vesicle coat complex C 73.0 58 0.0013 31.2 10.8 67 153-219 667-747 (794)
372 KOG4521 Nuclear pore complex, 72.2 27 0.00058 35.8 8.9 109 40-177 927-1046(1480)
373 KOG1920 IkappaB kinase complex 72.2 88 0.0019 32.4 12.5 107 24-141 930-1042(1265)
374 KOG0686 COP9 signalosome, subu 72.0 78 0.0017 28.8 17.5 147 60-212 137-288 (466)
375 PF05470 eIF-3c_N: Eukaryotic 71.2 1E+02 0.0022 29.7 14.7 57 164-220 468-527 (595)
376 KOG3024 Uncharacterized conser 70.6 69 0.0015 27.6 11.8 131 66-217 19-151 (312)
377 PF00244 14-3-3: 14-3-3 protei 70.3 31 0.00068 28.8 8.0 75 69-143 112-200 (236)
378 PF05053 Menin: Menin; InterP 70.0 66 0.0014 30.5 10.4 91 87-179 252-345 (618)
379 cd02656 MIT MIT: domain contai 69.5 19 0.00042 23.9 5.5 35 30-65 4-38 (75)
380 smart00101 14_3_3 14-3-3 homol 68.6 32 0.00069 28.9 7.7 54 89-142 145-201 (244)
381 smart00745 MIT Microtubule Int 68.4 25 0.00053 23.4 5.9 34 30-64 6-39 (77)
382 COG5187 RPN7 26S proteasome re 67.6 83 0.0018 27.4 12.4 91 89-179 92-182 (412)
383 PHA02537 M terminase endonucle 66.7 75 0.0016 26.5 10.2 103 46-149 96-215 (230)
384 PF01535 PPR: PPR repeat; Int 66.2 9.5 0.00021 19.8 2.9 26 154-179 2-27 (31)
385 cd09240 BRO1_Alix Protein-inte 64.6 84 0.0018 27.9 10.0 38 28-66 115-161 (346)
386 TIGR00756 PPR pentatricopeptid 64.5 13 0.00028 19.6 3.3 26 154-179 2-27 (35)
387 cd09241 BRO1_ScRim20-like Prot 64.1 60 0.0013 28.9 9.1 38 29-66 103-148 (355)
388 COG3898 Uncharacterized membra 63.8 1.2E+02 0.0025 27.7 19.7 131 6-143 101-260 (531)
389 PF10255 Paf67: RNA polymerase 63.8 1.2E+02 0.0025 27.7 16.2 123 114-238 124-264 (404)
390 PF08238 Sel1: Sel1 repeat; I 63.3 24 0.00051 19.5 4.5 28 113-140 2-36 (39)
391 TIGR03504 FimV_Cterm FimV C-te 62.9 17 0.00037 21.6 3.7 25 116-140 3-27 (44)
392 COG5159 RPN6 26S proteasome re 62.9 1E+02 0.0022 26.8 16.1 102 74-179 46-152 (421)
393 cd02677 MIT_SNX15 MIT: domain 62.7 29 0.00062 23.3 5.2 33 31-64 5-37 (75)
394 cd09034 BRO1_Alix_like Protein 62.2 1.1E+02 0.0024 26.9 11.3 39 28-66 107-154 (345)
395 cd02682 MIT_AAA_Arch MIT: doma 62.1 46 0.00099 22.4 7.5 26 40-65 13-38 (75)
396 KOG0890 Protein kinase of the 62.0 1.3E+02 0.0028 33.6 12.0 88 90-185 1647-1735(2382)
397 PF10255 Paf67: RNA polymerase 61.5 1.3E+02 0.0028 27.4 10.6 66 154-220 124-191 (404)
398 KOG3783 Uncharacterized conser 60.4 1.5E+02 0.0033 27.9 14.5 76 104-179 441-518 (546)
399 KOG2561 Adaptor protein NUB1, 60.4 1.4E+02 0.0031 27.5 11.8 138 38-175 168-338 (568)
400 COG4976 Predicted methyltransf 60.2 13 0.00029 30.9 3.8 53 87-145 10-62 (287)
401 COG2178 Predicted RNA-binding 59.9 93 0.002 25.2 10.6 103 118-221 35-149 (204)
402 KOG0292 Vesicle coat complex C 59.7 84 0.0018 31.6 9.4 72 87-176 649-722 (1202)
403 PF09205 DUF1955: Domain of un 59.0 77 0.0017 24.2 7.3 28 152-179 120-147 (161)
404 KOG1914 mRNA cleavage and poly 58.8 1.7E+02 0.0036 27.8 18.6 37 28-64 281-317 (656)
405 COG3118 Thioredoxin domain-con 57.6 1.3E+02 0.0028 26.2 15.4 93 85-184 147-268 (304)
406 COG5091 SGT1 Suppressor of G2 56.6 43 0.00094 28.6 6.2 66 126-191 53-118 (368)
407 cd09246 BRO1_Alix_like_1 Prote 56.3 1.3E+02 0.0028 26.8 9.7 38 28-66 107-153 (353)
408 KOG2053 Mitochondrial inherita 55.7 2.3E+02 0.005 28.5 14.0 155 40-217 50-214 (932)
409 PF13812 PPR_3: Pentatricopept 55.7 26 0.00057 18.5 3.6 26 154-179 3-28 (34)
410 COG3947 Response regulator con 53.8 79 0.0017 27.5 7.4 66 153-225 280-345 (361)
411 PF13041 PPR_2: PPR repeat fam 53.6 27 0.00058 20.8 3.6 29 153-181 4-32 (50)
412 TIGR02710 CRISPR-associated pr 53.6 1.7E+02 0.0037 26.4 14.0 56 40-96 137-195 (380)
413 KOG2908 26S proteasome regulat 53.4 1.6E+02 0.0036 26.1 15.6 84 92-178 58-141 (380)
414 COG3947 Response regulator con 53.4 56 0.0012 28.4 6.5 61 113-179 280-340 (361)
415 KOG2114 Vacuolar assembly/sort 53.1 1.1E+02 0.0025 30.4 9.2 49 94-142 349-398 (933)
416 cd09239 BRO1_HD-PTP_like Prote 51.2 1.7E+02 0.0036 26.2 9.6 38 28-66 110-156 (361)
417 PF08311 Mad3_BUB1_I: Mad3/BUB 48.9 1.1E+02 0.0023 22.7 10.5 117 53-179 5-126 (126)
418 COG3629 DnrI DNA-binding trans 48.2 1.2E+02 0.0026 26.1 7.8 64 152-222 153-216 (280)
419 KOG3783 Uncharacterized conser 48.1 2.5E+02 0.0053 26.6 18.2 72 150-221 447-519 (546)
420 PF14561 TPR_20: Tetratricopep 48.1 91 0.002 21.6 7.0 28 114-141 24-51 (90)
421 PF08969 USP8_dimer: USP8 dime 47.8 56 0.0012 23.7 5.2 37 110-146 36-72 (115)
422 PF04781 DUF627: Protein of un 46.8 1.1E+02 0.0024 22.3 10.2 89 81-179 5-98 (111)
423 smart00101 14_3_3 14-3-3 homol 46.7 1.8E+02 0.0038 24.5 15.6 53 128-181 144-200 (244)
424 KOG3364 Membrane protein invol 46.4 1.1E+02 0.0023 23.5 6.4 65 73-141 32-100 (149)
425 COG4477 EzrA Negative regulato 45.5 2.7E+02 0.0059 26.3 11.4 74 160-244 154-241 (570)
426 PF12309 KBP_C: KIF-1 binding 45.4 2.3E+02 0.005 25.5 15.9 60 5-64 140-206 (371)
427 COG1516 FliS Flagellin-specifi 45.2 1.1E+02 0.0024 23.0 6.3 38 29-67 28-65 (132)
428 KOG1938 Protein with predicted 44.0 2.8E+02 0.0062 28.1 10.4 94 87-181 290-384 (960)
429 KOG0739 AAA+-type ATPase [Post 42.6 48 0.001 29.0 4.5 18 126-143 24-41 (439)
430 KOG4422 Uncharacterized conser 42.5 2.7E+02 0.0059 25.8 9.3 103 131-235 501-607 (625)
431 cd09241 BRO1_ScRim20-like Prot 42.3 1.9E+02 0.0042 25.7 8.7 21 27-47 129-149 (355)
432 cd09240 BRO1_Alix Protein-inte 42.1 2.5E+02 0.0054 24.9 10.2 19 29-47 144-162 (346)
433 PF02609 Exonuc_VII_S: Exonucl 40.8 43 0.00092 20.7 3.1 47 215-262 4-50 (53)
434 cd09247 BRO1_Alix_like_2 Prote 40.5 2.6E+02 0.0057 24.7 11.3 17 129-145 213-229 (346)
435 PF03097 BRO1: BRO1-like domai 40.1 86 0.0019 28.0 6.2 38 28-65 103-148 (377)
436 cd09242 BRO1_ScBro1_like Prote 39.6 2.7E+02 0.0059 24.7 9.6 38 28-65 103-148 (348)
437 COG4259 Uncharacterized protei 39.4 48 0.001 23.8 3.4 33 114-146 74-106 (121)
438 PF02064 MAS20: MAS20 protein 39.2 43 0.00094 24.8 3.4 30 115-144 66-95 (121)
439 PF09797 NatB_MDM20: N-acetylt 39.1 2.6E+02 0.0057 24.8 9.1 49 131-179 195-244 (365)
440 KOG0276 Vesicle coat complex C 38.7 2.1E+02 0.0045 27.7 8.3 78 114-220 616-693 (794)
441 KOG2561 Adaptor protein NUB1, 38.0 3.3E+02 0.0072 25.2 9.5 107 112-220 163-294 (568)
442 PF14561 TPR_20: Tetratricopep 37.8 1.4E+02 0.003 20.7 5.8 31 152-182 22-52 (90)
443 KOG2114 Vacuolar assembly/sort 37.2 4.5E+02 0.0098 26.5 17.7 35 28-62 363-397 (933)
444 PF04353 Rsd_AlgQ: Regulator o 36.6 1.8E+02 0.0039 22.5 6.5 51 75-125 87-139 (153)
445 cd09242 BRO1_ScBro1_like Prote 35.9 3.1E+02 0.0068 24.3 12.9 33 71-103 105-147 (348)
446 KOG4563 Cell cycle-regulated h 35.8 1.6E+02 0.0035 26.4 6.7 64 110-173 39-104 (400)
447 PF01399 PCI: PCI domain; Int 35.6 43 0.00094 23.2 2.9 23 219-241 3-25 (105)
448 cd09246 BRO1_Alix_like_1 Prote 35.0 3.3E+02 0.0071 24.2 10.0 20 28-47 135-154 (353)
449 KOG2709 Uncharacterized conser 34.7 57 0.0012 29.7 3.9 33 112-144 22-54 (560)
450 PF04097 Nic96: Nup93/Nic96; 34.5 4.4E+02 0.0094 25.5 12.9 27 152-178 503-531 (613)
451 PF03097 BRO1: BRO1-like domai 34.0 3.1E+02 0.0066 24.4 8.7 20 27-46 130-149 (377)
452 PF14689 SPOB_a: Sensor_kinase 33.0 1.3E+02 0.0029 19.1 4.8 25 155-179 26-50 (62)
453 KOG0890 Protein kinase of the 31.8 8.3E+02 0.018 27.9 13.2 85 126-219 1643-1728(2382)
454 cd09247 BRO1_Alix_like_2 Prote 31.5 1.9E+02 0.0041 25.6 6.8 38 28-65 109-152 (346)
455 KOG0292 Vesicle coat complex C 30.7 2.9E+02 0.0063 28.0 8.1 42 126-178 657-698 (1202)
456 PF05053 Menin: Menin; InterP 30.7 4.9E+02 0.011 25.0 11.9 107 51-158 255-364 (618)
457 PF07079 DUF1347: Protein of u 30.5 4.6E+02 0.0099 24.5 14.7 139 40-184 13-160 (549)
458 KOG2034 Vacuolar sorting prote 30.1 74 0.0016 31.7 4.2 53 117-178 363-415 (911)
459 PF14287 DUF4368: Domain of un 30.1 67 0.0014 21.3 2.8 33 227-262 9-41 (71)
460 COG4649 Uncharacterized protei 30.0 3E+02 0.0064 22.2 13.4 97 76-180 97-195 (221)
461 KOG1498 26S proteasome regulat 29.3 4.4E+02 0.0096 24.0 22.3 144 111-259 130-279 (439)
462 PF03745 DUF309: Domain of unk 28.9 1.6E+02 0.0035 18.8 5.4 58 158-216 5-62 (62)
463 COG2912 Uncharacterized conser 28.6 2.6E+02 0.0055 24.0 6.7 74 106-185 175-248 (269)
464 cd07645 I-BAR_IMD_BAIAP2L1 Inv 28.2 3.5E+02 0.0075 22.4 7.5 61 27-96 30-92 (226)
465 PF11846 DUF3366: Domain of un 27.9 3E+02 0.0066 21.7 8.9 53 87-143 123-175 (193)
466 cd09243 BRO1_Brox_like Protein 27.9 4.4E+02 0.0096 23.5 13.2 38 28-65 105-153 (353)
467 KOG4703 Uncharacterized conser 27.6 32 0.0007 29.4 1.2 18 245-262 392-409 (431)
468 PF11159 DUF2939: Protein of u 27.3 57 0.0012 22.8 2.3 12 225-236 23-34 (95)
469 PF12753 Nro1: Nuclear pore co 26.6 75 0.0016 28.7 3.3 36 131-167 330-365 (404)
470 PF04910 Tcf25: Transcriptiona 26.3 4.7E+02 0.01 23.3 13.0 103 112-220 40-166 (360)
471 COG3629 DnrI DNA-binding trans 26.1 4.3E+02 0.0093 22.8 12.4 63 112-180 153-215 (280)
472 KOG2709 Uncharacterized conser 26.0 2.6E+02 0.0056 25.7 6.5 28 38-65 27-54 (560)
473 PHA02537 M terminase endonucle 25.8 3.9E+02 0.0085 22.3 9.8 38 70-107 166-213 (230)
474 KOG1107 Membrane coat complex 25.8 3.9E+02 0.0084 26.2 7.9 21 127-147 655-675 (760)
475 KOG1811 Predicted Zn2+-binding 25.4 2.8E+02 0.006 26.9 6.8 52 195-246 589-652 (1141)
476 PF09670 Cas_Cas02710: CRISPR- 25.4 5E+02 0.011 23.3 14.1 61 77-141 136-198 (379)
477 PF04097 Nic96: Nup93/Nic96; 25.3 6.3E+02 0.014 24.5 13.3 21 229-252 536-556 (613)
478 PF03635 Vps35: Vacuolar prote 25.3 7E+02 0.015 25.0 13.6 164 96-261 575-761 (762)
479 TIGR00208 fliS flagellar biosy 25.2 2.8E+02 0.0062 20.4 6.8 38 29-67 28-65 (124)
480 cd09245 BRO1_UmRIM23-like Prot 25.2 3.4E+02 0.0073 24.9 7.4 16 49-64 159-174 (413)
481 KOG1310 WD40 repeat protein [G 24.5 1.5E+02 0.0032 28.2 4.8 51 87-143 426-476 (758)
482 PRK05685 fliS flagellar protei 24.1 3.1E+02 0.0067 20.5 6.5 38 29-67 32-69 (132)
483 PF09577 Spore_YpjB: Sporulati 24.1 2.5E+02 0.0054 23.4 5.8 12 125-136 18-29 (232)
484 PF09613 HrpB1_HrpK: Bacterial 24.0 3.6E+02 0.0077 21.1 12.3 85 112-209 10-94 (160)
485 TIGR02561 HrpB1_HrpK type III 23.7 3.5E+02 0.0076 21.0 9.1 83 114-209 12-94 (153)
486 cd09243 BRO1_Brox_like Protein 23.5 3.9E+02 0.0085 23.8 7.3 32 114-145 250-281 (353)
487 KOG4563 Cell cycle-regulated h 22.4 4.6E+02 0.01 23.6 7.2 38 28-65 36-73 (400)
488 KOG1953 Targeting complex (TRA 22.2 61 0.0013 32.8 2.1 51 111-161 244-294 (1235)
489 PF09613 HrpB1_HrpK: Bacterial 21.9 3.9E+02 0.0085 20.9 9.6 87 70-168 7-94 (160)
490 PF11372 DUF3173: Domain of un 21.8 1.2E+02 0.0026 19.4 2.7 22 5-26 16-39 (59)
491 TIGR00985 3a0801s04tom mitocho 21.8 1.4E+02 0.003 23.1 3.5 30 116-145 94-124 (148)
492 COG3898 Uncharacterized membra 21.6 6.4E+02 0.014 23.2 17.9 124 41-179 92-215 (531)
493 KOG2610 Uncharacterized conser 21.4 6.1E+02 0.013 22.8 15.2 96 114-218 177-272 (491)
494 KOG1310 WD40 repeat protein [G 20.9 4.6E+02 0.0099 25.1 7.2 60 114-179 410-472 (758)
495 smart00386 HAT HAT (Half-A-TPR 20.8 1.1E+02 0.0023 15.5 2.2 17 127-143 2-18 (33)
496 KOG4014 Uncharacterized conser 20.7 4.7E+02 0.01 21.3 11.1 78 94-179 50-139 (248)
497 COG3160 Rsd Regulator of sigma 20.7 3.9E+02 0.0085 20.4 9.6 90 27-125 48-139 (162)
498 cd09034 BRO1_Alix_like Protein 20.7 5.8E+02 0.012 22.3 8.3 33 114-146 253-285 (345)
499 PF12753 Nro1: Nuclear pore co 20.5 2.2E+02 0.0048 25.8 5.1 33 110-144 355-387 (404)
500 KOG0739 AAA+-type ATPase [Post 20.5 4.5E+02 0.0098 23.2 6.7 56 1-62 1-71 (439)
No 1
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-53 Score=339.26 Aligned_cols=265 Identities=55% Similarity=0.940 Sum_probs=253.6
Q ss_pred hhHHHHHHHHHHhhc---cccCCC--CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024043 6 ARAEEFEKKAEKKLN---GWGLFG--SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAA 80 (273)
Q Consensus 6 ~~a~~l~~~Aek~~k---~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~ 80 (273)
.+|..++++|||+++ ||++|| +.|++|+++|.++++.|+..++|+.|+++|.++++++.+.|+.++++.+|..++
T Consensus 2 ~~a~~l~k~AEkK~~~s~gF~lfgg~~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~ 81 (288)
T KOG1586|consen 2 SDAVQLMKKAEKKLNGSGGFLLFGGSNKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAA 81 (288)
T ss_pred ccHHHHHHHHHHhcccCCcccccCCCcchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 589999999999999 355665 799999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHH
Q 024043 81 HCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE-HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVA 159 (273)
Q Consensus 81 ~~~~~~~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~-g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a 159 (273)
+||++.+|.+|++|+++|++||.+.|++..+|+....+|++|+.. .++++|+.+|++|.+.|.......+++.|+.++|
T Consensus 82 ~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA 161 (288)
T KOG1586|consen 82 NCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVA 161 (288)
T ss_pred HHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999997 8999999999999999999988899999999999
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH----------------HHH
Q 024043 160 QYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ----------------DIA 223 (273)
Q Consensus 160 ~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~----------------~ll 223 (273)
..-..+++|.+|+.+|++++..++++++.+|+++.+++++|+||++..|...+++++++|. +|+
T Consensus 162 ~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~ 241 (288)
T KOG1586|consen 162 QYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLL 241 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998 789
Q ss_pred HHHhhcCHhHHHHHHHhhhccCCCchhHHHHHHHHHHhccccccccCCCC
Q 024043 224 ASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKLKAKELEEDDLT 273 (273)
Q Consensus 224 ~a~~~~d~~~~~~~~~~~~~~~~ld~~~~~~l~~~~~~~~~~~~~~~~~~ 273 (273)
++++.+|.+.|++.|++||++++||.|.|+||++||++|++ ++|||+
T Consensus 242 ~aieE~d~e~fte~vkefDsisrLD~W~ttiLlkiK~siq~---~edDL~ 288 (288)
T KOG1586|consen 242 DAIEEQDIEKFTEVVKEFDSISRLDQWKTTILLKIKKSIQG---DEDDLR 288 (288)
T ss_pred HHHhhhhHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHhc---cccccC
Confidence 99999999999999999999999999999999999999984 444664
No 2
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=100.00 E-value=2.9e-51 Score=352.03 Aligned_cols=258 Identities=48% Similarity=0.820 Sum_probs=234.1
Q ss_pred hhHHHHHHHHHHhhcc---c-cCCC---CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024043 6 ARAEEFEKKAEKKLNG---W-GLFG---SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVD 78 (273)
Q Consensus 6 ~~a~~l~~~Aek~~k~---~-~~~~---~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~ 78 (273)
++|++|+++|||++|+ | ++|+ |+|++|+++|.+||++|+..++|++|+++|.++++++.+.+++..++.+|.+
T Consensus 1 ~~a~~l~~~Aek~lk~~~~~~~~f~~~~~~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~ 80 (282)
T PF14938_consen 1 QEAEELIKEAEKKLKKSSGFFSFFGSKKPDYEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEE 80 (282)
T ss_dssp -HHHHHHHHHHHHCS---TCCCHH--SCHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhccccchhhhcCCCCCCHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4899999999999993 2 3343 6999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHhccCCcccHHHHHHH
Q 024043 79 AAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE-HNIEQTIVFFEKAADMFQNEEVTTSANQCKQK 157 (273)
Q Consensus 79 ~~~~~~~~~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~-g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~ 157 (273)
++.+|++.+|++|+++|++|+++|...|++..+|+++.++|.+|+.. |++++|+++|++|+++|+..+.+..+..++.+
T Consensus 81 Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~ 160 (282)
T PF14938_consen 81 AANCYKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLK 160 (282)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH----------------H
Q 024043 158 VAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ----------------D 221 (273)
Q Consensus 158 ~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~----------------~ 221 (273)
+|.++..+|+|++|+++|++++...+++++++++++.+++++++|+|..||++.|++++++|. +
T Consensus 161 ~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~ 240 (282)
T PF14938_consen 161 AADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLED 240 (282)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHH
Confidence 999999999999999999999988888888899999999999999999999999999999987 7
Q ss_pred HHHHHhhcCHhHHHHHHHhhhccCCCchhHHHHHHHHHHhcc
Q 024043 222 IAASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKLK 263 (273)
Q Consensus 222 ll~a~~~~d~~~~~~~~~~~~~~~~ld~~~~~~l~~~~~~~~ 263 (273)
||++++.+|++.|+++|.+||++++||||+|+||++||++|+
T Consensus 241 l~~A~~~~D~e~f~~av~~~d~~~~ld~w~~~~l~~~k~~~~ 282 (282)
T PF14938_consen 241 LLEAYEEGDVEAFTEAVAEYDSISRLDNWKTKMLLKIKKKIE 282 (282)
T ss_dssp HHHHHHTT-CCCHHHHCHHHTTSS---HHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHcccCccHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999999884
No 3
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.2e-29 Score=202.19 Aligned_cols=246 Identities=19% Similarity=0.231 Sum_probs=213.9
Q ss_pred hHHHHHHHHHHhhc-cccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 024043 7 RAEEFEKKAEKKLN-GWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKK 85 (273)
Q Consensus 7 ~a~~l~~~Aek~~k-~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~ 85 (273)
.|.+-+.+|++++. ..++|++||+.|+..|.+|++.|+..++|++|..++.+|.+.++...+++.+|.+|+.++.+.++
T Consensus 4 ~aakki~ea~e~~a~t~~~wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake 83 (308)
T KOG1585|consen 4 DAAKKISEADEMTALTLTRWKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKE 83 (308)
T ss_pred cHHHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 35566666666665 45679999999999999999999999999999999999999999999999999999999999999
Q ss_pred c-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHH
Q 024043 86 T-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAE 164 (273)
Q Consensus 86 ~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~ 164 (273)
. .+.|++.+|++|..+|.+.|.+..++.++.+.|.+++. .+|+.|++.|++++++++..++.+.+...+.+++.++++
T Consensus 84 ~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~len-v~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVr 162 (308)
T KOG1585|consen 84 LSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALEN-VKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVR 162 (308)
T ss_pred HHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhh
Confidence 9 89999999999999999999999999999999999998 899999999999999999999989999999999999999
Q ss_pred hcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH---------------HHHHHHhhc
Q 024043 165 LEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ---------------DIAASMDEE 229 (273)
Q Consensus 165 ~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~---------------~ll~a~~~~ 229 (273)
+.+|++|...+.+.+........ -.+....+..+.++||...|++.|..+++... .||.+++.|
T Consensus 163 l~kf~Eaa~a~lKe~~~~~~~~~-y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd~g 241 (308)
T KOG1585|consen 163 LEKFTEAATAFLKEGVAADKCDA-YNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDEG 241 (308)
T ss_pred hHHhhHHHHHHHHhhhHHHHHhh-cccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhccC
Confidence 99999999999887532221110 01233345667889999999999999998733 799999999
Q ss_pred CHhHHHHHHHhhhccCCCchhHHHHH
Q 024043 230 DIAKFTDVVKEFDSMTPLDPWKTTLL 255 (273)
Q Consensus 230 d~~~~~~~~~~~~~~~~ld~~~~~~l 255 (273)
|+|.++..+.. +.++.+|+--.++-
T Consensus 242 D~E~~~kvl~s-p~~r~MDneya~l~ 266 (308)
T KOG1585|consen 242 DIEEIKKVLSS-PTVRNMDNEYAHLN 266 (308)
T ss_pred CHHHHHHHHcC-hHhhhhhHHHHHHh
Confidence 99999998875 77788887755443
No 4
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.79 E-value=5.5e-17 Score=139.51 Aligned_cols=197 Identities=22% Similarity=0.303 Sum_probs=155.6
Q ss_pred CHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC
Q 024043 68 SKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEE 146 (273)
Q Consensus 68 ~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~ 146 (273)
++.+++..|..+|++|+.. ++++|.++|.+|.+++.+.+++..++.++.+.+.++.. +++++|+.+|++|+++|...|
T Consensus 30 ~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~~~~~A~~~y~~~G 108 (282)
T PF14938_consen 30 DYEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDEAIECYEKAIEIYREAG 108 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHHHHHHHHHHHHHHhcC
Confidence 3455566666666666665 78899999999999999999999999999999999988 499999999999999999999
Q ss_pred CcccHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH-----
Q 024043 147 VTTSANQCKQKVAQYAAEL-EQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ----- 220 (273)
Q Consensus 147 ~~~~~~~~~~~~a~~~~~~-g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~----- 220 (273)
++..++.++.++|.+|... |++++|+++|++++....... .......++.+++.++...|++.+|...|++..
T Consensus 109 ~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~ 187 (282)
T PF14938_consen 109 RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLE 187 (282)
T ss_dssp -HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCC
T ss_pred cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999 999999999999986544433 234566788899999999999999999998754
Q ss_pred --------------HHHHHHhhcCHhHHHHHHHhhhccCC--CchhHHHHHHHHHHhccccc
Q 024043 221 --------------DIAASMDEEDIAKFTDVVKEFDSMTP--LDPWKTTLLLRVKEKLKAKE 266 (273)
Q Consensus 221 --------------~ll~a~~~~d~~~~~~~~~~~~~~~~--ld~~~~~~l~~~~~~~~~~~ 266 (273)
.+|-.+..||+...+.++.+|....+ .++---+++..|-+.++.++
T Consensus 188 ~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D 249 (282)
T PF14938_consen 188 NNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGD 249 (282)
T ss_dssp HCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-
T ss_pred ccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCC
Confidence 45556678999999999999876643 34444578888888887543
No 5
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.75 E-value=5.8e-15 Score=134.18 Aligned_cols=255 Identities=16% Similarity=0.167 Sum_probs=205.3
Q ss_pred HhhHHHHHHHHHHhhc-cccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHH
Q 024043 5 IARAEEFEKKAEKKLN-GWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKL-E-SKHEAAQAYVDAAH 81 (273)
Q Consensus 5 ~~~a~~l~~~Aek~~k-~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~-~-~~~~aa~~~~~~~~ 81 (273)
.++|..+.+.|-..+. ++| -+...-..+....|.+|...+++++|+..|++|+.+.+.. | +....+.++.+++.
T Consensus 215 ~e~A~~l~k~Al~~l~k~~G---~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ 291 (508)
T KOG1840|consen 215 LEKAEPLCKQALRILEKTSG---LKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAV 291 (508)
T ss_pred HHHHHHHHHHHHHHHHHccC---ccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 5678888888888765 543 3444444555578999999999999999999999999844 3 67788999999999
Q ss_pred HHhcc-CHHHHHHHHHHHHHHHHh--cCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc-CC-cccHHHHHH
Q 024043 82 CYKKT-SSNEAISCLEQAVNMFCD--IGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE-EV-TTSANQCKQ 156 (273)
Q Consensus 82 ~~~~~-~~~eA~~~~~~Al~~~~~--~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~-~~-~~~~~~~~~ 156 (273)
+|... ++.+|..|+++|++|+.+ .-+....+..+.+++.++...+++++|..+|+++++++... +. ....+.++.
T Consensus 292 ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~ 371 (508)
T KOG1840|consen 292 LYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYA 371 (508)
T ss_pred HHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHH
Confidence 99777 999999999999999987 24567789999999999999999999999999999999843 22 347789999
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHhccc-hhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcC---Hh
Q 024043 157 KVAQYAAELEQYHKSIEIYEEIARQSLNNN-LLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDIAASMDEED---IA 232 (273)
Q Consensus 157 ~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~ll~a~~~~d---~~ 232 (273)
++|.+|..+|+|.+|.++|++++.+..... ...++....+.+++..+...+.+..|...|.++..|+.++..+. ..
T Consensus 372 nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~ 451 (508)
T KOG1840|consen 372 NLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTY 451 (508)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHH
Confidence 999999999999999999999985532211 12345566777888888888899999999999998887775543 35
Q ss_pred HHHHHHHhhhccCCCchhHH--HHHHHHHHhc
Q 024043 233 KFTDVVKEFDSMTPLDPWKT--TLLLRVKEKL 262 (273)
Q Consensus 233 ~~~~~~~~~~~~~~ld~~~~--~~l~~~~~~~ 262 (273)
.+.....-|+.+.+++.-.+ ..+.++++.-
T Consensus 452 ~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~ 483 (508)
T KOG1840|consen 452 TYLNLAALYRAQGNYEAAEELEEKVLNAREQR 483 (508)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHc
Confidence 68888899999999988765 3344444433
No 6
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.74 E-value=1.7e-17 Score=149.12 Aligned_cols=206 Identities=21% Similarity=0.279 Sum_probs=154.4
Q ss_pred CCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHH--------------HcCCHHHHHH----
Q 024043 27 SKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHL--------------KLESKHEAAQ---- 74 (273)
Q Consensus 27 ~~~~~A~~~~~~a--------------~~~~~~~~~~~~A~~~~~~a~~~~~--------------~~~~~~~aa~---- 74 (273)
|+...|+..|.+| |++|+..+.|+.|+.||++|+.+.. +.|...-+..
T Consensus 232 Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykr 311 (966)
T KOG4626|consen 232 GEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKR 311 (966)
T ss_pred chHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHH
Confidence 6777777777654 8888888888888888888876532 1222222322
Q ss_pred ----------HHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 024043 75 ----------AYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQ 143 (273)
Q Consensus 75 ----------~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~ 143 (273)
+|.++++..++. +..+|+.||.+|+.+.... |.+..|+|.++.++|..++|+.+|.+|++++.
T Consensus 312 al~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~h------adam~NLgni~~E~~~~e~A~~ly~~al~v~p 385 (966)
T KOG4626|consen 312 ALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNH------ADAMNNLGNIYREQGKIEEATRLYLKALEVFP 385 (966)
T ss_pred HHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCcc------HHHHHHHHHHHHHhccchHHHHHHHHHHhhCh
Confidence 356777777666 7788888888887775543 45889999999999999999999999999985
Q ss_pred ccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH---
Q 024043 144 NEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ--- 220 (273)
Q Consensus 144 ~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~--- 220 (273)
. .+....++|.+|.++|++++|+.+|++++...+ ..+..+.++|.++-.+||...|..++.+.-
T Consensus 386 ~------~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P-------~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n 452 (966)
T KOG4626|consen 386 E------FAAAHNNLASIYKQQGNLDDAIMCYKEALRIKP-------TFADALSNMGNTYKEMGDVSAAIQCYTRAIQIN 452 (966)
T ss_pred h------hhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCc-------hHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC
Confidence 3 356788999999999999999999999975433 345678899999999999999999888754
Q ss_pred -HHHHH-----HhhcCHhHHHHHHHhhhccCCCchhH
Q 024043 221 -DIAAS-----MDEEDIAKFTDVVKEFDSMTPLDPWK 251 (273)
Q Consensus 221 -~ll~a-----~~~~d~~~~~~~~~~~~~~~~ld~~~ 251 (273)
.+-+| .-..|..-+.+++..|...-.|+|-+
T Consensus 453 Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDf 489 (966)
T KOG4626|consen 453 PTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDF 489 (966)
T ss_pred cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCC
Confidence 11121 12466667888888888777777654
No 7
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.71 E-value=8.3e-17 Score=138.72 Aligned_cols=210 Identities=13% Similarity=0.216 Sum_probs=179.1
Q ss_pred HHHHHHHHHHhhc-c-----ccCC------C-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Q 024043 8 AEEFEKKAEKKLN-G-----WGLF------G-SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQ 74 (273)
Q Consensus 8 a~~l~~~Aek~~k-~-----~~~~------~-~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~ 74 (273)
-.+|-.++|+++| | ..|| | .|+..-...|.+.|+.|...++|.+|++++.-=+.+.+-+|+..+.|.
T Consensus 17 CleLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAK 96 (639)
T KOG1130|consen 17 CLELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAK 96 (639)
T ss_pred HHHHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccc
Confidence 4577788899888 3 2344 2 466667778999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCC--------------------HHHHHH
Q 024043 75 AYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHN--------------------IEQTIV 133 (273)
Q Consensus 75 ~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~--------------------~~~A~~ 133 (273)
+..++|++++-. .|++|+.|+.+-+.+.++.||....++++.++|.+|...|+ ++.|++
T Consensus 97 ssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~ 176 (639)
T KOG1130|consen 97 SSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVK 176 (639)
T ss_pred ccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHH
Confidence 999999999887 99999999999999999999999999999999999987653 567888
Q ss_pred HHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHH--HHHHhccchhhhchhhHHHHHHHHHHhcCCHHH
Q 024043 134 FFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEI--ARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVA 211 (273)
Q Consensus 134 ~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~ 211 (273)
+|..-+++.+..|+......++-++|..|.-+|+|+.||...+.- +....|+. ...+..+.++|.||...|+++.
T Consensus 177 fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDr---AaeRRA~sNlgN~hiflg~fe~ 253 (639)
T KOG1130|consen 177 FYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDR---AAERRAHSNLGNCHIFLGNFEL 253 (639)
T ss_pred HHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhH---HHHHHhhcccchhhhhhcccHh
Confidence 888888888999988777899999999999999999999877654 35566663 3455677789999999999999
Q ss_pred HHHHHHHHH
Q 024043 212 ITNALERYQ 220 (273)
Q Consensus 212 A~~~~~~~~ 220 (273)
|.+++..-.
T Consensus 254 A~ehYK~tl 262 (639)
T KOG1130|consen 254 AIEHYKLTL 262 (639)
T ss_pred HHHHHHHHH
Confidence 988887643
No 8
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.70 E-value=4.9e-16 Score=139.75 Aligned_cols=237 Identities=14% Similarity=0.197 Sum_probs=169.5
Q ss_pred HhhHHHHHHHHHHhhc------c-cc-CCC--CCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHH
Q 024043 5 IARAEEFEKKAEKKLN------G-WG-LFG--SKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLA 60 (273)
Q Consensus 5 ~~~a~~l~~~Aek~~k------~-~~-~~~--~~~~~A~~~~~~a--------------~~~~~~~~~~~~A~~~~~~a~ 60 (273)
.+.|...+-+|-.+-- + .| +.+ |..++|..+|.+| |.+|..+|+.-.|+..|++|.
T Consensus 166 ~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAv 245 (966)
T KOG4626|consen 166 LELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAV 245 (966)
T ss_pred CcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhh
Confidence 3456666666665332 1 12 223 7899999999987 678999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHH--------------HHhcCChhHHH-------------
Q 024043 61 NCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNM--------------FCDIGRLSMAA------------- 112 (273)
Q Consensus 61 ~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~--------------~~~~g~~~~~a------------- 112 (273)
.+-.. -..+|.++|++|++. .|++|+.||.+|+.+ |-+.|..+.+.
T Consensus 246 kldP~------f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F 319 (966)
T KOG4626|consen 246 KLDPN------FLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNF 319 (966)
T ss_pred cCCCc------chHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCc
Confidence 87432 245788888888887 888888888888663 22334444433
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhc
Q 024043 113 -RYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYG 191 (273)
Q Consensus 113 -~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~ 191 (273)
.++.|+|..+...|+..+|..+|.+|+.+-. .-++++.++|.++.++|++++|+..|++++...++
T Consensus 320 ~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p------~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~------- 386 (966)
T KOG4626|consen 320 PDAYNNLANALKDKGSVTEAVDCYNKALRLCP------NHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE------- 386 (966)
T ss_pred hHHHhHHHHHHHhccchHHHHHHHHHHHHhCC------ccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-------
Confidence 2566788888888888888888888887753 33577888888888888888888888888654333
Q ss_pred hhhHHHHHHHHHHhcCCHHHHHHHHHHHH----HHHHHHhh-cC----HhHHHHHHHhhhccCCCchhHHHHHHHHHH
Q 024043 192 VKGHLLNAGICQLCKGDVVAITNALERYQ----DIAASMDE-ED----IAKFTDVVKEFDSMTPLDPWKTTLLLRVKE 260 (273)
Q Consensus 192 ~~~~~~~~gl~~l~~gd~~~A~~~~~~~~----~ll~a~~~-~d----~~~~~~~~~~~~~~~~ld~~~~~~l~~~~~ 260 (273)
......+++.++..+|++..|..++++.. .+-+++.+ |+ ...++.++.+|...+.+.|-+......+..
T Consensus 387 ~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLas 464 (966)
T KOG4626|consen 387 FAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLAS 464 (966)
T ss_pred hhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHH
Confidence 33456778888888888888888888765 22334422 33 456788888888888888888766665554
No 9
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.68 E-value=2.6e-14 Score=129.93 Aligned_cols=215 Identities=18% Similarity=0.177 Sum_probs=182.1
Q ss_pred hHhhHHHHHHHHHHhhccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH
Q 024043 4 QIARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKL--ESKHEAAQAYVDAAH 81 (273)
Q Consensus 4 ~~~~a~~l~~~Aek~~k~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~aa~~~~~~~~ 81 (273)
.+.+|..++++|=..... .||++.+..+..+...+.+|...|++++|..++++|.+++++. -+....+..+.+++.
T Consensus 256 k~~eAv~ly~~AL~i~e~--~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~ 333 (508)
T KOG1840|consen 256 KYDEAVNLYEEALTIREE--VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAA 333 (508)
T ss_pred cHHHHHHHHHHHHHHHHH--hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHH
Confidence 467888888888887773 4788889999999999999999999999999999999999872 367888889999999
Q ss_pred HHhcc-CHHHHHHHHHHHHHHHHh-cCChh-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCC--cccHHHHHH
Q 024043 82 CYKKT-SSNEAISCLEQAVNMFCD-IGRLS-MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEV--TTSANQCKQ 156 (273)
Q Consensus 82 ~~~~~-~~~eA~~~~~~Al~~~~~-~g~~~-~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~--~~~~~~~~~ 156 (273)
++... ++++|+.++++++.++.. .|... ..+..+.++|.+|..+|+|++|.++|++|+.+.++.+. ....+..+.
T Consensus 334 ~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~ 413 (508)
T KOG1840|consen 334 ILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLN 413 (508)
T ss_pred HHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHH
Confidence 99877 999999999999999974 45555 78999999999999999999999999999999987644 466678899
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043 157 KVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ 220 (273)
Q Consensus 157 ~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~ 220 (273)
++|..+.++++|.+|..+|.+++.........-.++-..+.+++.+|-.+|.++.|.+..+...
T Consensus 414 ~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 414 QLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 9999999999999999999999644321111122455677899999999999999888777654
No 10
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.66 E-value=1.6e-15 Score=130.91 Aligned_cols=191 Identities=15% Similarity=0.174 Sum_probs=162.5
Q ss_pred CCHHHHHHHHHH--------------------HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc
Q 024043 27 SKYEDAADLFDK--------------------AANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT 86 (273)
Q Consensus 27 ~~~~~A~~~~~~--------------------a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~ 86 (273)
+||++|.++... .|+.++..|.|++|+.|..+-+++.+++|+....++++.++|++|...
T Consensus 69 ~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhak 148 (639)
T KOG1130|consen 69 KDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAK 148 (639)
T ss_pred hhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhc
Confidence 799999887653 378999999999999999999999999999999999999999999543
Q ss_pred -------C--------------HHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 024043 87 -------S--------------SNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE 145 (273)
Q Consensus 87 -------~--------------~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~ 145 (273)
. ++.|+++|+.-+++.++.||...+++++-++|..|.-+|+|++|+...+.=++|.++-
T Consensus 149 Gk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~ef 228 (639)
T KOG1130|consen 149 GKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEF 228 (639)
T ss_pred ccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHh
Confidence 1 2467888888888889999999999999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043 146 EVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIA--RQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ 220 (273)
Q Consensus 146 ~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~--~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~ 220 (273)
|+......++.++|.+++-+|+++.|+++|.+.. ...+++.. -.+...+.+|..|....++..|..++++-.
T Consensus 229 GDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~---vEAQscYSLgNtytll~e~~kAI~Yh~rHL 302 (639)
T KOG1130|consen 229 GDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRT---VEAQSCYSLGNTYTLLKEVQKAITYHQRHL 302 (639)
T ss_pred hhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchh---HHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 9988888999999999999999999999999985 55666632 233345666777666667777777776643
No 11
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=1.1e-12 Score=105.74 Aligned_cols=199 Identities=17% Similarity=0.217 Sum_probs=147.1
Q ss_pred cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhc
Q 024043 46 AKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE 125 (273)
Q Consensus 46 ~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~ 125 (273)
.+.+++|.+.|.+|+.+|+-..+ ...|-..|.+|.+++.+.|+.+.+|.++...+.+|..
T Consensus 27 ~~k~eeAadl~~~Aan~yklaK~-------------------w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk- 86 (288)
T KOG1586|consen 27 SNKYEEAAELYERAANMYKLAKN-------------------WSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKK- 86 (288)
T ss_pred CcchHHHHHHHHHHHHHHHHHHh-------------------HHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc-
Confidence 34566666666666666654444 4455555566666667788888889999999999998
Q ss_pred CCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHH
Q 024043 126 HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAE-LEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQL 204 (273)
Q Consensus 126 g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~-~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l 204 (273)
+++.+|+.++++|++||...|+.+.++.....+|.+|.. +.++++||.+|++++.-.-+... ..+...++++....--
T Consensus 87 ~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees-~ssANKC~lKvA~yaa 165 (288)
T KOG1586|consen 87 VDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEES-VSSANKCLLKVAQYAA 165 (288)
T ss_pred cChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhh-hhhHHHHHHHHHHHHH
Confidence 799999999999999999999988888999999999975 48999999999999866555432 2344445555544334
Q ss_pred hcCCHHHHHHHHHHHH-------------------HHHHHHhhcCHhHHHHHHHhhhccCCC--chhHHHHHHHHHHhcc
Q 024043 205 CKGDVVAITNALERYQ-------------------DIAASMDEEDIAKFTDVVKEFDSMTPL--DPWKTTLLLRVKEKLK 263 (273)
Q Consensus 205 ~~gd~~~A~~~~~~~~-------------------~ll~a~~~~d~~~~~~~~~~~~~~~~l--d~~~~~~l~~~~~~~~ 263 (273)
..+++.+|.+.+++-. ..+..+...|+-..+.++..|..+.|- |.=.-++|.++-+.|+
T Consensus 166 ~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~~aie 245 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLLDAIE 245 (288)
T ss_pred HHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHh
Confidence 4567888888777632 445566778888899999999766552 3333489999999887
Q ss_pred cc
Q 024043 264 AK 265 (273)
Q Consensus 264 ~~ 265 (273)
+.
T Consensus 246 E~ 247 (288)
T KOG1586|consen 246 EQ 247 (288)
T ss_pred hh
Confidence 43
No 12
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.50 E-value=1.6e-12 Score=123.59 Aligned_cols=202 Identities=10% Similarity=0.024 Sum_probs=149.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHH
Q 024043 35 LFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAAR 113 (273)
Q Consensus 35 ~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~ 113 (273)
.+...|.++...|++++|+..|.+++++... ...++..+|.++... ++++|+.+|++++++.... +.
T Consensus 333 a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~------~~ 400 (615)
T TIGR00990 333 ALNLRGTFKCLKGKHLEALADLSKSIELDPR------VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSED------PD 400 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HH
Confidence 4455577888899999999999999887432 245677888888777 9999999999998874322 45
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchh
Q 024043 114 YYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVK 193 (273)
Q Consensus 114 ~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~ 193 (273)
++..+|.++...|++++|+.+|++|+++.+.. ...+..+|.++..+|++++|+..|++++...+.+ .
T Consensus 401 ~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~-------~ 467 (615)
T TIGR00990 401 IYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF------IFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEA-------P 467 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCccC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-------h
Confidence 88899999999999999999999999886432 3567889999999999999999999987654443 2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-----------HH-----hhcCHhHHHHHHHhhhccCCCchhHHHHHHH
Q 024043 194 GHLLNAGICQLCKGDVVAITNALERYQDIAA-----------SM-----DEEDIAKFTDVVKEFDSMTPLDPWKTTLLLR 257 (273)
Q Consensus 194 ~~~~~~gl~~l~~gd~~~A~~~~~~~~~ll~-----------a~-----~~~d~~~~~~~~~~~~~~~~ld~~~~~~l~~ 257 (273)
..+..+|.++...|++.+|...+++...+-. .+ .....+.+.+++..|.....+||-....+..
T Consensus 468 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~ 547 (615)
T TIGR00990 468 DVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVAT 547 (615)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 3566778899999999999998888652210 00 0011346677777777777777765555555
Q ss_pred HHHh
Q 024043 258 VKEK 261 (273)
Q Consensus 258 ~~~~ 261 (273)
+...
T Consensus 548 la~~ 551 (615)
T TIGR00990 548 MAQL 551 (615)
T ss_pred HHHH
Confidence 4443
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.49 E-value=2.6e-12 Score=122.10 Aligned_cols=177 Identities=14% Similarity=0.075 Sum_probs=137.6
Q ss_pred CCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHH
Q 024043 26 GSKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNE 90 (273)
Q Consensus 26 ~~~~~~A~~~~~~a--------------~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~e 90 (273)
.+++++|...|.++ |.++...|++++|+.+|.+++++... -..++..+|.++... ++++
T Consensus 344 ~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~ 417 (615)
T TIGR00990 344 KGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE------DPDIYYHRAQLHFIKGEFAQ 417 (615)
T ss_pred cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHH
Confidence 38999999999876 56788899999999999999877321 145788899999877 9999
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHH
Q 024043 91 AISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHK 170 (273)
Q Consensus 91 A~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~ 170 (273)
|+.+|++++.+.... ...+.++|.++..+|++++|+..|++++..+... ..++..+|.++..+|++++
T Consensus 418 A~~~~~kal~l~P~~------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~------~~~~~~lg~~~~~~g~~~~ 485 (615)
T TIGR00990 418 AGKDYQKSIDLDPDF------IFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEA------PDVYNYYGELLLDQNKFDE 485 (615)
T ss_pred HHHHHHHHHHcCccC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHccCHHH
Confidence 999999999886543 3468899999999999999999999999886432 4678899999999999999
Q ss_pred HHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043 171 SIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ 220 (273)
Q Consensus 171 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~ 220 (273)
|++.|++++...++......+....+..++.++...|++.+|...+++..
T Consensus 486 A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl 535 (615)
T TIGR00990 486 AIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKAL 535 (615)
T ss_pred HHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 99999999865444321111222222233344445688888888888754
No 14
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=2.1e-11 Score=106.92 Aligned_cols=160 Identities=18% Similarity=0.223 Sum_probs=133.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 024043 40 ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEI 118 (273)
Q Consensus 40 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~l 118 (273)
||-|...++.++|+.+|.+|+.+.++. ..++.-+|.=|-++ +...|+++|++|+++.+..- ++|..+
T Consensus 337 aNYYSlr~eHEKAv~YFkRALkLNp~~------~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~Dy------RAWYGL 404 (559)
T KOG1155|consen 337 ANYYSLRSEHEKAVMYFKRALKLNPKY------LSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDY------RAWYGL 404 (559)
T ss_pred hhHHHHHHhHHHHHHHHHHHHhcCcch------hHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhH------HHHhhh
Confidence 567888889999999999999886433 34667789999888 99999999999999987654 499999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHH
Q 024043 119 AELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLN 198 (273)
Q Consensus 119 g~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (273)
|+.|..++.+-=|+-+|++|.++-+.+ ...|..+|.||.++++.++|+++|.+++. .++ .....+.+
T Consensus 405 GQaYeim~Mh~YaLyYfqkA~~~kPnD------sRlw~aLG~CY~kl~~~~eAiKCykrai~--~~d-----te~~~l~~ 471 (559)
T KOG1155|consen 405 GQAYEIMKMHFYALYYFQKALELKPND------SRLWVALGECYEKLNRLEEAIKCYKRAIL--LGD-----TEGSALVR 471 (559)
T ss_pred hHHHHHhcchHHHHHHHHHHHhcCCCc------hHHHHHHHHHHHHhccHHHHHHHHHHHHh--ccc-----cchHHHHH
Confidence 999999999999999999999885432 36789999999999999999999999963 122 12346788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHH
Q 024043 199 AGICQLCKGDVVAITNALERYQDIAA 224 (273)
Q Consensus 199 ~gl~~l~~gd~~~A~~~~~~~~~ll~ 224 (273)
++..|-..+|..+|..++++|.....
T Consensus 472 LakLye~l~d~~eAa~~yek~v~~~~ 497 (559)
T KOG1155|consen 472 LAKLYEELKDLNEAAQYYEKYVEVSE 497 (559)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 89999999999999999999985443
No 15
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.41 E-value=2.6e-11 Score=97.80 Aligned_cols=170 Identities=17% Similarity=0.136 Sum_probs=145.0
Q ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcC
Q 024043 28 KYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIG 106 (273)
Q Consensus 28 ~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g 106 (273)
+...|.....+.|.-|...|++..|..-+++|++.-.. -..++.-++.+|... +++.|-+.|++|+.+-...|
T Consensus 30 ~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs------~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~G 103 (250)
T COG3063 30 DRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPS------YYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNG 103 (250)
T ss_pred cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCcc
Confidence 67789999999999999999999999999999988432 234666778888777 99999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccc
Q 024043 107 RLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNN 186 (273)
Q Consensus 107 ~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~ 186 (273)
+ +++|-|.-+..+|+|++|..+|++|++- ......+.++.++|.|..+.|+.+.|.++|++++...++.+
T Consensus 104 d------VLNNYG~FLC~qg~~~eA~q~F~~Al~~----P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~ 173 (250)
T COG3063 104 D------VLNNYGAFLCAQGRPEEAMQQFERALAD----PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFP 173 (250)
T ss_pred c------hhhhhhHHHHhCCChHHHHHHHHHHHhC----CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCC
Confidence 8 9999999999999999999999999864 12234457899999999999999999999999987666554
Q ss_pred hhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043 187 LLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ 220 (273)
Q Consensus 187 ~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~ 220 (273)
. .+..+.-.+...||+..|+-.+++|.
T Consensus 174 ~-------~~l~~a~~~~~~~~y~~Ar~~~~~~~ 200 (250)
T COG3063 174 P-------ALLELARLHYKAGDYAPARLYLERYQ 200 (250)
T ss_pred h-------HHHHHHHHHHhcccchHHHHHHHHHH
Confidence 2 33455566778899999999999987
No 16
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.41 E-value=4.6e-11 Score=98.10 Aligned_cols=173 Identities=15% Similarity=0.134 Sum_probs=139.4
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhc
Q 024043 27 SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI 105 (273)
Q Consensus 27 ~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~ 105 (273)
++.+.....+...|.++...|++++|...+.+++.... .....+..+|.++... ++++|++++++++.+....
T Consensus 25 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 98 (234)
T TIGR02521 25 TDRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDP------DDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNN 98 (234)
T ss_pred ccCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 45566677888889999999999999999999987632 2245777889999777 9999999999999875433
Q ss_pred CChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043 106 GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN 185 (273)
Q Consensus 106 g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~ 185 (273)
...+.++|.++...|++++|+.+|++++.... .......+..+|.++...|++++|...|++++...+++
T Consensus 99 ------~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 168 (234)
T TIGR02521 99 ------GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPL----YPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQR 168 (234)
T ss_pred ------HHHHHHHHHHHHHcccHHHHHHHHHHHHhccc----cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence 24788999999999999999999999997532 12234567889999999999999999999997654433
Q ss_pred chhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 024043 186 NLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDI 222 (273)
Q Consensus 186 ~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~l 222 (273)
...+..++.++...|++++|...++++..+
T Consensus 169 -------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 169 -------PESLLELAELYYLRGQYKDARAYLERYQQT 198 (234)
T ss_pred -------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 234567788999999999999999987543
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.41 E-value=9.1e-11 Score=105.15 Aligned_cols=162 Identities=18% Similarity=0.159 Sum_probs=115.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 024043 40 ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEI 118 (273)
Q Consensus 40 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~l 118 (273)
|.+|...|++++|..+|.++.+.. .....++..++.++... ++++|++.+++++....... ....+..+..+
T Consensus 114 a~~~~~~g~~~~A~~~~~~~l~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~l 186 (389)
T PRK11788 114 GQDYLKAGLLDRAEELFLQLVDEG------DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSL-RVEIAHFYCEL 186 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCC------cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcc-hHHHHHHHHHH
Confidence 556677777777777777776541 11234566677777666 88888888888776543222 12345567788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHH
Q 024043 119 AELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLN 198 (273)
Q Consensus 119 g~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (273)
|.++...|++++|+.+|++++++.+.. ..++..+|.++...|++++|++.|+++....+.. ....+..
T Consensus 187 a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~~ 254 (389)
T PRK11788 187 AQQALARGDLDAARALLKKALAADPQC------VRASILLGDLALAQGDYAAAIEALERVEEQDPEY------LSEVLPK 254 (389)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhHCcCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh------HHHHHHH
Confidence 888888899999999999998875421 3567889999999999999999999987542221 2234556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 024043 199 AGICQLCKGDVVAITNALERYQ 220 (273)
Q Consensus 199 ~gl~~l~~gd~~~A~~~~~~~~ 220 (273)
++.++...|+++.|...+++..
T Consensus 255 l~~~~~~~g~~~~A~~~l~~~~ 276 (389)
T PRK11788 255 LMECYQALGDEAEGLEFLRRAL 276 (389)
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 6778888999999988888754
No 18
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=1.2e-10 Score=94.61 Aligned_cols=183 Identities=17% Similarity=0.152 Sum_probs=140.9
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCChh
Q 024043 30 EDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLS 109 (273)
Q Consensus 30 ~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~eA~~~~~~Al~~~~~~g~~~ 109 (273)
-.|+..|++++-+.+....|.++.++|++|..+|.+.|.+.-++.++..++.+....+|++|+..|++++.++...++..
T Consensus 68 fhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ 147 (308)
T KOG1585|consen 68 FHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQ 147 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHH
Confidence 34444444555666677789999999999999999999999999999999999998899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--Hhccch
Q 024043 110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQ--SLNNNL 187 (273)
Q Consensus 110 ~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~--~~~~~~ 187 (273)
.+-..+..++.++.....+++|...+.+-..++.......+....+...-.++....+|..|-.+|+..-.. ..++
T Consensus 148 ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~s-- 225 (308)
T KOG1585|consen 148 MAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKS-- 225 (308)
T ss_pred HHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccCh--
Confidence 999999999999999999999999999887777766655554455555556666777999999999885211 1111
Q ss_pred hhhchhhHHHHHHHHHHhcCCHHHHHHHHHH
Q 024043 188 LKYGVKGHLLNAGICQLCKGDVVAITNALER 218 (273)
Q Consensus 188 ~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~ 218 (273)
.....+-++ +--...||.+.+...+.-
T Consensus 226 ---ed~r~lenL-L~ayd~gD~E~~~kvl~s 252 (308)
T KOG1585|consen 226 ---EDSRSLENL-LTAYDEGDIEEIKKVLSS 252 (308)
T ss_pred ---HHHHHHHHH-HHHhccCCHHHHHHHHcC
Confidence 111122222 223457898888777664
No 19
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.39 E-value=1.4e-12 Score=118.63 Aligned_cols=197 Identities=17% Similarity=0.229 Sum_probs=156.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHH
Q 024043 39 AANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKE 117 (273)
Q Consensus 39 a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~ 117 (273)
+||+|..+++++.|+.||++|+.+-.. -+.+|..+|.=+... .++.|..+|++|+.+-.+.= ++|..
T Consensus 427 ~GNcfSLQkdh~~Aik~f~RAiQldp~------faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhY------nAwYG 494 (638)
T KOG1126|consen 427 LGNCFSLQKDHDTAIKCFKRAIQLDPR------FAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHY------NAWYG 494 (638)
T ss_pred hcchhhhhhHHHHHHHHHHHhhccCCc------cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhh------HHHHh
Confidence 589999999999999999999988432 245777777666555 89999999999998766554 49999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHH
Q 024043 118 IAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLL 197 (273)
Q Consensus 118 lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (273)
+|.+|.++++++.|.-+|++|+++.... ...+.-+|.++.++|+.++|+.+|++++...+.+++.+ +
T Consensus 495 lG~vy~Kqek~e~Ae~~fqkA~~INP~n------svi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~-------~ 561 (638)
T KOG1126|consen 495 LGTVYLKQEKLEFAEFHFQKAVEINPSN------SVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCK-------Y 561 (638)
T ss_pred hhhheeccchhhHHHHHHHhhhcCCccc------hhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhH-------H
Confidence 9999999999999999999999996533 35688899999999999999999999987777766533 4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH----------HHHHHhhcCHhHHHHHHHhhhccCCCchhHHHHHHHHHHhcc
Q 024043 198 NAGICQLCKGDVVAITNALERYQD----------IAASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKLK 263 (273)
Q Consensus 198 ~~gl~~l~~gd~~~A~~~~~~~~~----------ll~a~~~~d~~~~~~~~~~~~~~~~ld~~~~~~l~~~~~~~~ 263 (273)
..+.++...++++.|...+++... ++.- -..-...-.-++..|.-+..|||-=++ .+||..++
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgk-i~k~~~~~~~Al~~f~~A~~ldpkg~~--i~~k~~~~ 634 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKELVPQESSVFALLGK-IYKRLGNTDLALLHFSWALDLDPKGAQ--IQIKAAIE 634 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHH-HHHHHccchHHHHhhHHHhcCCCccch--hhHHHHhh
Confidence 556777788999999999998651 2211 122234455678888888999999888 66666554
No 20
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.35 E-value=2.6e-10 Score=111.44 Aligned_cols=190 Identities=14% Similarity=0.078 Sum_probs=129.6
Q ss_pred hHHHHHHHHHHhhccccCCCCCHHHHHHHHHH--------------HHHHHHHcCCHHHHHHHHHHHHHHH---------
Q 024043 7 RAEEFEKKAEKKLNGWGLFGSKYEDAADLFDK--------------AANSFKLAKSWDKAGATYVKLANCH--------- 63 (273)
Q Consensus 7 ~a~~l~~~Aek~~k~~~~~~~~~~~A~~~~~~--------------a~~~~~~~~~~~~A~~~~~~a~~~~--------- 63 (273)
.+..++..|...++ .|+|++|+..+.+ .|.+|...|+|++|...+.++....
T Consensus 21 ~~~~~~~~a~~~~~-----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 95 (899)
T TIGR02917 21 SPESLIEAAKSYLQ-----KNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPL 95 (899)
T ss_pred CHHHHHHHHHHHHH-----cCChHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHH
Confidence 45566666666665 2366666655554 3667777788888888777766431
Q ss_pred -----HHcC---------------CHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 024043 64 -----LKLE---------------SKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELY 122 (273)
Q Consensus 64 -----~~~~---------------~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~ 122 (273)
...| +....+..+..+|.++... ++++|+.+|++++...+.. ..++..+|.++
T Consensus 96 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~ 169 (899)
T TIGR02917 96 LARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRS------LYAKLGLAQLA 169 (899)
T ss_pred HHHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------hhhHHHHHHHH
Confidence 1111 3344556677788888766 8999999999988765432 33677888888
Q ss_pred HhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHH
Q 024043 123 ESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGIC 202 (273)
Q Consensus 123 ~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~ 202 (273)
...|++++|+..++++++.... ....+..+|.++...|++++|+..|++++...++++ ..++.++.+
T Consensus 170 ~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~-------~~~~~~~~~ 236 (899)
T TIGR02917 170 LAENRFDEARALIDEVLTADPG------NVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNP-------AVLLALATI 236 (899)
T ss_pred HHCCCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH-------HHHHHHHHH
Confidence 8888888888888888776432 235677778888888888888888888875544332 244556667
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 024043 203 QLCKGDVVAITNALERYQ 220 (273)
Q Consensus 203 ~l~~gd~~~A~~~~~~~~ 220 (273)
++..|++.+|...++...
T Consensus 237 ~~~~g~~~~A~~~~~~~~ 254 (899)
T TIGR02917 237 LIEAGEFEEAEKHADALL 254 (899)
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 777777777777766543
No 21
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.35 E-value=9.4e-10 Score=98.58 Aligned_cols=179 Identities=18% Similarity=0.154 Sum_probs=137.2
Q ss_pred CCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHH
Q 024043 26 GSKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNE 90 (273)
Q Consensus 26 ~~~~~~A~~~~~~a--------------~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~e 90 (273)
.+++++|...|.++ |.++...|++++|+..+.++...- ..........+..+|.+|... ++++
T Consensus 48 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--~~~~~~~~~~~~~La~~~~~~g~~~~ 125 (389)
T PRK11788 48 NEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRP--DLTREQRLLALQELGQDYLKAGLLDR 125 (389)
T ss_pred cCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 36777777777765 678889999999999999877521 112333456788999999777 9999
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHH
Q 024043 91 AISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHK 170 (273)
Q Consensus 91 A~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~ 170 (273)
|+.+|+++++.. .....++..++.++...|++++|++.+++++........ ......+..+|.++...|++++
T Consensus 126 A~~~~~~~l~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 126 AEELFLQLVDEG------DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLR-VEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred HHHHHHHHHcCC------cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcch-HHHHHHHHHHHHHHHhCCCHHH
Confidence 999999998651 123457889999999999999999999999876543322 1234567889999999999999
Q ss_pred HHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043 171 SIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ 220 (273)
Q Consensus 171 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~ 220 (273)
|+.+|++++...+.. ...+..++.++...|++.+|.+.+++..
T Consensus 199 A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~ 241 (389)
T PRK11788 199 ARALLKKALAADPQC-------VRASILLGDLALAQGDYAAAIEALERVE 241 (389)
T ss_pred HHHHHHHHHhHCcCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999997644332 2345677888999999999999888754
No 22
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.34 E-value=2.8e-10 Score=95.09 Aligned_cols=183 Identities=16% Similarity=0.085 Sum_probs=142.3
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhc
Q 024043 27 SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI 105 (273)
Q Consensus 27 ~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~ 105 (273)
|..+...+.+...|..+...|++++|+..|.++...+.. ......++..+|.++... ++++|+..|++++..+...
T Consensus 27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~ 103 (235)
T TIGR03302 27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPF---SPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNH 103 (235)
T ss_pred CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---chhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC
Confidence 356677777778899999999999999999998876532 233445678889999887 9999999999999988754
Q ss_pred CChhHHHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHHHhccCCcccHH-----------HHHHHHHHHHHHhc
Q 024043 106 GRLSMAARYYKEIAELYESE--------HNIEQTIVFFEKAADMFQNEEVTTSAN-----------QCKQKVAQYAAELE 166 (273)
Q Consensus 106 g~~~~~a~~l~~lg~~~~~~--------g~~~~A~~~y~~Al~~~~~~~~~~~~~-----------~~~~~~a~~~~~~g 166 (273)
.. ...++..+|.++... |++++|+..|++++..++.......+- .....+|.++...|
T Consensus 104 ~~---~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g 180 (235)
T TIGR03302 104 PD---ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRG 180 (235)
T ss_pred Cc---hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 43 345678888888765 789999999999999887654321110 11246788999999
Q ss_pred CHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 024043 167 QYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERY 219 (273)
Q Consensus 167 ~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~ 219 (273)
++.+|+..|++++...++++ .....++.+|.++...|++.+|..+++..
T Consensus 181 ~~~~A~~~~~~al~~~p~~~----~~~~a~~~l~~~~~~lg~~~~A~~~~~~l 229 (235)
T TIGR03302 181 AYVAAINRFETVVENYPDTP----ATEEALARLVEAYLKLGLKDLAQDAAAVL 229 (235)
T ss_pred ChHHHHHHHHHHHHHCCCCc----chHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999987666542 23457788999999999999999877764
No 23
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.34 E-value=2.9e-10 Score=93.29 Aligned_cols=170 Identities=14% Similarity=0.087 Sum_probs=132.0
Q ss_pred CCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHH
Q 024043 27 SKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEA 91 (273)
Q Consensus 27 ~~~~~A~~~~~~a--------------~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA 91 (273)
+++++|.+.+.++ |.++...|++++|...|.++....... ...+.++|.++... ++++|
T Consensus 45 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~~~~~~~~~g~~~~A 118 (234)
T TIGR02521 45 GDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNN------GDVLNNYGTFLCQQGKYEQA 118 (234)
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcccHHHH
Confidence 5666666666653 678888999999999999999875322 24677888888777 99999
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHH
Q 024043 92 ISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKS 171 (273)
Q Consensus 92 ~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A 171 (273)
++++++++... ........+.++|.++...|++++|..++.+++...... ...+..+|.++...|++++|
T Consensus 119 ~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 119 MQQFEQAIEDP----LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQR------PESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHHHHHHhcc----ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC------hHHHHHHHHHHHHcCCHHHH
Confidence 99999998642 223345678889999999999999999999999875432 35678999999999999999
Q ss_pred HHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 024043 172 IEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERY 219 (273)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~ 219 (273)
+.+++++...... ....+...+.++...|+...|...++..
T Consensus 189 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 189 RAYLERYQQTYNQ-------TAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHhCCC-------CHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9999998754221 1233445567788899999988877664
No 24
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.32 E-value=3.2e-10 Score=91.63 Aligned_cols=162 Identities=16% Similarity=0.132 Sum_probs=130.9
Q ss_pred CHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC
Q 024043 68 SKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEE 146 (273)
Q Consensus 68 ~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~ 146 (273)
+...++.+...+|.-|... ++..|...+++|+++-+..- .++.-++.+|...|+.+.|-+.|++|+.+....|
T Consensus 30 ~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~------~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~G 103 (250)
T COG3063 30 DRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYY------LAHLVRAHYYQKLGENDLADESYRKALSLAPNNG 103 (250)
T ss_pred cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH------HHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCcc
Confidence 5678889999999999877 99999999999999866543 4888999999999999999999999999987655
Q ss_pred CcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH------
Q 024043 147 VTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ------ 220 (273)
Q Consensus 147 ~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~------ 220 (273)
+++++.|..++.+|+|++|...|++++. +| .-+.....+.|+|+|.+.+|+..+|+..|++..
T Consensus 104 ------dVLNNYG~FLC~qg~~~eA~q~F~~Al~----~P-~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~ 172 (250)
T COG3063 104 ------DVLNNYGAFLCAQGRPEEAMQQFERALA----DP-AYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQF 172 (250)
T ss_pred ------chhhhhhHHHHhCCChHHHHHHHHHHHh----CC-CCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCC
Confidence 6899999999999999999999999963 22 122345678899999999999999999999865
Q ss_pred --HHHH----HHhhcCHhHHHHHHHhhhccCC
Q 024043 221 --DIAA----SMDEEDIAKFTDVVKEFDSMTP 246 (273)
Q Consensus 221 --~ll~----a~~~~d~~~~~~~~~~~~~~~~ 246 (273)
.+++ .++.|+.-.-+--+..|..-..
T Consensus 173 ~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~ 204 (250)
T COG3063 173 PPALLELARLHYKAGDYAPARLYLERYQQRGG 204 (250)
T ss_pred ChHHHHHHHHHHhcccchHHHHHHHHHHhccc
Confidence 1111 2455665555555666665555
No 25
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.29 E-value=3.6e-10 Score=108.00 Aligned_cols=169 Identities=16% Similarity=0.150 Sum_probs=120.9
Q ss_pred CCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHH
Q 024043 27 SKYEDAADLFDKA---------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNE 90 (273)
Q Consensus 27 ~~~~~A~~~~~~a---------------~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~e 90 (273)
+++++|...+.++ +.++...|++++|+..|.+++.... ....++..+|.++... ++++
T Consensus 191 g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p------~~~~~~~~Lg~~l~~~G~~~e 264 (656)
T PRK15174 191 SRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL------DGAALRRSLGLAYYQSGRSRE 264 (656)
T ss_pred CCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHcCCchh
Confidence 5666666655442 3445556777777777777665431 1245566778887666 6664
Q ss_pred ----HHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhc
Q 024043 91 ----AISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE 166 (273)
Q Consensus 91 ----A~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g 166 (273)
|+.+|++++.+... .+.++..+|.++...|++++|+.++++++++.... ..++..+|.++...|
T Consensus 265 A~~~A~~~~~~Al~l~P~------~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~------~~a~~~La~~l~~~G 332 (656)
T PRK15174 265 AKLQAAEHWRHALQFNSD------NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDL------PYVRAMYARALRQVG 332 (656)
T ss_pred hHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCC
Confidence 78888888887543 24688889999999999999999999999875432 356778899999999
Q ss_pred CHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043 167 QYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ 220 (273)
Q Consensus 167 ~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~ 220 (273)
++++|+..|++++...+... ..+..++.++...|++++|...++++.
T Consensus 333 ~~~eA~~~l~~al~~~P~~~-------~~~~~~a~al~~~G~~deA~~~l~~al 379 (656)
T PRK15174 333 QYTAASDEFVQLAREKGVTS-------KWNRYAAAALLQAGKTSEAESVFEHYI 379 (656)
T ss_pred CHHHHHHHHHHHHHhCccch-------HHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999998876544321 233445777888999999999888764
No 26
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.29 E-value=4.6e-10 Score=107.29 Aligned_cols=115 Identities=13% Similarity=0.029 Sum_probs=85.9
Q ss_pred CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHHHhccCCcccHHHHHHHHHHHH
Q 024043 87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQ----TIVFFEKAADMFQNEEVTTSANQCKQKVAQYA 162 (273)
Q Consensus 87 ~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~----A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~ 162 (273)
++++|+..|++++.+... -+.++.++|.++...|++++ |+.+|++|+++.+. ...++..+|.++
T Consensus 227 ~~~eA~~~~~~al~~~p~------~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~------~~~a~~~lg~~l 294 (656)
T PRK15174 227 KYQEAIQTGESALARGLD------GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD------NVRIVTLYADAL 294 (656)
T ss_pred CHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC------CHHHHHHHHHHH
Confidence 666666666666654321 24567788888888888885 78888888887542 246788899999
Q ss_pred HHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043 163 AELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ 220 (273)
Q Consensus 163 ~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~ 220 (273)
..+|++++|+..+++++...+.++ ..+..++.++...|++++|...+++..
T Consensus 295 ~~~g~~~eA~~~l~~al~l~P~~~-------~a~~~La~~l~~~G~~~eA~~~l~~al 345 (656)
T PRK15174 295 IRTGQNEKAIPLLQQSLATHPDLP-------YVRAMYARALRQVGQYTAASDEFVQLA 345 (656)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999999999999886555432 245667888899999999988887654
No 27
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.29 E-value=3.3e-10 Score=111.64 Aligned_cols=196 Identities=14% Similarity=0.078 Sum_probs=137.4
Q ss_pred CCHHHHHHHHHHH-------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-cCHHHHH
Q 024043 27 SKYEDAADLFDKA-------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKK-TSSNEAI 92 (273)
Q Consensus 27 ~~~~~A~~~~~~a-------------~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~-~~~~eA~ 92 (273)
+++++|...|.++ |.++...|++++|..+|.+++..... . ...+..++..... .++++|+
T Consensus 523 Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~--~----~~l~~~La~~l~~~Gr~~eAl 596 (987)
T PRK09782 523 EDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG--D----NALYWWLHAQRYIPGQPELAL 596 (987)
T ss_pred CCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc--c----HHHHHHHHHHHHhCCCHHHHH
Confidence 6677777766643 33456677777777777777654211 1 1222233333333 3899999
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHH
Q 024043 93 SCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSI 172 (273)
Q Consensus 93 ~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~ 172 (273)
.+|++++.+.. . +..+.++|.++...|++++|+.+|++|+++.+.. ..++.++|.++...|++++|+
T Consensus 597 ~~~~~AL~l~P-----~--~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~------~~a~~nLG~aL~~~G~~eeAi 663 (987)
T PRK09782 597 NDLTRSLNIAP-----S--ANAYVARATIYRQRHNVPAAVSDLRAALELEPNN------SNYQAALGYALWDSGDIAQSR 663 (987)
T ss_pred HHHHHHHHhCC-----C--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCCHHHHH
Confidence 99999987754 1 4578899999999999999999999999986432 367899999999999999999
Q ss_pred HHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH-------HHHHHHhhcC----HhHHHHHHHhh
Q 024043 173 EIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ-------DIAASMDEED----IAKFTDVVKEF 241 (273)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~-------~ll~a~~~~d----~~~~~~~~~~~ 241 (273)
.+|++++...++++ ..+.++|.++...|+++.|..++++.. .+.. ..|. ...|+.+...|
T Consensus 664 ~~l~~AL~l~P~~~-------~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~--~~g~~~~~~~~~~~a~~~~ 734 (987)
T PRK09782 664 EMLERAHKGLPDDP-------ALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITP--LTPEQNQQRFNFRRLHEEV 734 (987)
T ss_pred HHHHHHHHhCCCCH-------HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhh--hhhHHHHHHHHHHHHHHHH
Confidence 99999987666542 467888999999999999999999865 1111 1111 12366666666
Q ss_pred hccCCCchh
Q 024043 242 DSMTPLDPW 250 (273)
Q Consensus 242 ~~~~~ld~~ 250 (273)
.....+++-
T Consensus 735 ~r~~~~~~~ 743 (987)
T PRK09782 735 GRRWTFSFD 743 (987)
T ss_pred HHHhhcCcc
Confidence 666655444
No 28
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.25 E-value=4.6e-10 Score=98.63 Aligned_cols=169 Identities=20% Similarity=0.225 Sum_probs=130.9
Q ss_pred CCCCHHHHHHHHHHHH--------------HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHH
Q 024043 25 FGSKYEDAADLFDKAA--------------NSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSN 89 (273)
Q Consensus 25 ~~~~~~~A~~~~~~a~--------------~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~ 89 (273)
-.||+++|++.|.+|. ..+..+|+.++|++||.+...+.. ..+.++..++++|..+ ++.
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~------nn~evl~qianiye~led~a 575 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILL------NNAEVLVQIANIYELLEDPA 575 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHhhCHH
Confidence 3599999999999873 346778999999999999887763 3478999999999888 999
Q ss_pred HHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHH
Q 024043 90 EAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYH 169 (273)
Q Consensus 90 eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~ 169 (273)
+|+++|.++..+.... ..++.++|.+|...|+-.+|.+|+-..-..|... .++...+|..|+...=.+
T Consensus 576 qaie~~~q~~slip~d------p~ilskl~dlydqegdksqafq~~ydsyryfp~n------ie~iewl~ayyidtqf~e 643 (840)
T KOG2003|consen 576 QAIELLMQANSLIPND------PAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCN------IETIEWLAAYYIDTQFSE 643 (840)
T ss_pred HHHHHHHHhcccCCCC------HHHHHHHHHHhhcccchhhhhhhhhhcccccCcc------hHHHHHHHHHHHhhHHHH
Confidence 9999999998776533 3489999999999999999999997766666432 356677888888888889
Q ss_pred HHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHH
Q 024043 170 KSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALER 218 (273)
Q Consensus 170 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~ 218 (273)
+|+.+|+++....+. ...+.+.+.-|....|++.+|-+.+..
T Consensus 644 kai~y~ekaaliqp~-------~~kwqlmiasc~rrsgnyqka~d~yk~ 685 (840)
T KOG2003|consen 644 KAINYFEKAALIQPN-------QSKWQLMIASCFRRSGNYQKAFDLYKD 685 (840)
T ss_pred HHHHHHHHHHhcCcc-------HHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 999999998643332 222334456677888888766555443
No 29
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.23 E-value=9.8e-10 Score=111.43 Aligned_cols=181 Identities=9% Similarity=0.020 Sum_probs=134.2
Q ss_pred CCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHH---H-----HHHHHHHHHHHHh
Q 024043 27 SKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLKLESKH---E-----AAQAYVDAAHCYK 84 (273)
Q Consensus 27 ~~~~~A~~~~~~a--------------~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~---~-----aa~~~~~~~~~~~ 84 (273)
+++++|...|.++ |.++...|++++|+.+|.++++......... . ........|.++.
T Consensus 283 g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~ 362 (1157)
T PRK11447 283 GQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAAL 362 (1157)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHH
Confidence 7888888888875 5778889999999999999887764333211 0 1122334566665
Q ss_pred cc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCc-ccH-----------
Q 024043 85 KT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVT-TSA----------- 151 (273)
Q Consensus 85 ~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~-~~~----------- 151 (273)
.. ++++|+.+|++++.+.... +.++..+|.++...|++++|+++|++|+.+....... ...
T Consensus 363 ~~g~~~eA~~~~~~Al~~~P~~------~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~ 436 (1157)
T PRK11447 363 KANNLAQAERLYQQARQVDNTD------SYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEK 436 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHH
Confidence 55 9999999999999875422 3578899999999999999999999999876543210 000
Q ss_pred ------------------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcC
Q 024043 152 ------------------------NQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKG 207 (273)
Q Consensus 152 ------------------------~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~g 207 (273)
...+...|.++...|++++|++.|++++...++++ ..++.++.++...|
T Consensus 437 A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~-------~~~~~LA~~~~~~G 509 (1157)
T PRK11447 437 ALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSV-------WLTYRLAQDLRQAG 509 (1157)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHcC
Confidence 12234567778889999999999999987666542 35577888999999
Q ss_pred CHHHHHHHHHHHH
Q 024043 208 DVVAITNALERYQ 220 (273)
Q Consensus 208 d~~~A~~~~~~~~ 220 (273)
++.+|...+++..
T Consensus 510 ~~~~A~~~l~~al 522 (1157)
T PRK11447 510 QRSQADALMRRLA 522 (1157)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998864
No 30
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.23 E-value=5.9e-09 Score=89.39 Aligned_cols=208 Identities=17% Similarity=0.123 Sum_probs=156.8
Q ss_pred HhhHHHHHHHHHHhhccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC--CHH--HHHHHHHHHH
Q 024043 5 IARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLE--SKH--EAAQAYVDAA 80 (273)
Q Consensus 5 ~~~a~~l~~~Aek~~k~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~--~aa~~~~~~~ 80 (273)
++.+.+.+++|=|..+. .+|.---.+.+.-.|.+|....++++|+-+..+|+++....+ ++. -.+.++..++
T Consensus 138 fq~~Lesfe~A~~~A~~----~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhma 213 (518)
T KOG1941|consen 138 FQKALESFEKALRYAHN----NDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMA 213 (518)
T ss_pred HHHHHHHHHHHHHHhhc----cCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHH
Confidence 34455555555554441 112222234455568899999999999999999999998665 332 2334455677
Q ss_pred HHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHH
Q 024043 81 HCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVA 159 (273)
Q Consensus 81 ~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a 159 (273)
..++.. +...|.++.++|..+....||....++++.-+|.+|...|+.+.|...|++|..+....|++.....++..+|
T Consensus 214 ValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~A 293 (518)
T KOG1941|consen 214 VALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAA 293 (518)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 777766 9999999999999999999999999999999999999999999999999999999999999988899999999
Q ss_pred HHHHHhcCHHH-----HHHHHHHHH--HHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 024043 160 QYAAELEQYHK-----SIEIYEEIA--RQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERY 219 (273)
Q Consensus 160 ~~~~~~g~y~~-----A~~~~~~~~--~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~ 219 (273)
.+...+.-..+ |++.-++.+ ...+|. ++.+.....++..+|...|+-++-...+.++
T Consensus 294 kc~~~~r~~~k~~~Crale~n~r~levA~~IG~---K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra 357 (518)
T KOG1941|consen 294 KCLETLRLQNKICNCRALEFNTRLLEVASSIGA---KLSVLKLHCRLASIYRSKGLQDELRAHVVRA 357 (518)
T ss_pred HHHHHHHHhhcccccchhHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 98877654444 888777775 335554 3445555566778888888765555554443
No 31
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.22 E-value=7.1e-10 Score=109.35 Aligned_cols=194 Identities=11% Similarity=0.006 Sum_probs=134.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 024043 42 SFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAE 120 (273)
Q Consensus 42 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~ 120 (273)
.+...|++++|+.+|.++.... ..+ ..+..+|.++... ++++|+.+|++++...... ...+..++.
T Consensus 518 al~~~Gr~eeAi~~~rka~~~~--p~~-----~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~------~~l~~~La~ 584 (987)
T PRK09782 518 QAYQVEDYATALAAWQKISLHD--MSN-----EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGD------NALYWWLHA 584 (987)
T ss_pred HHHHCCCHHHHHHHHHHHhccC--CCc-----HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcc------HHHHHHHHH
Confidence 3345666666666666643221 011 1133455555544 7777777777777653111 223334555
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHH
Q 024043 121 LYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAG 200 (273)
Q Consensus 121 ~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 200 (273)
.....|++++|+.+|++|+++.. . ...+.++|.++.++|++++|+..|++++...+++. ..+.++|
T Consensus 585 ~l~~~Gr~~eAl~~~~~AL~l~P------~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~-------~a~~nLG 650 (987)
T PRK09782 585 QRYIPGQPELALNDLTRSLNIAP------S-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNS-------NYQAALG 650 (987)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCC------C-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-------HHHHHHH
Confidence 55566999999999999998864 2 46789999999999999999999999987666553 4677889
Q ss_pred HHHHhcCCHHHHHHHHHHHHHH---------HHHHhhcCHhHHHHHHHhhhccCCCchhHHHHHHHHHHhc
Q 024043 201 ICQLCKGDVVAITNALERYQDI---------AASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKL 262 (273)
Q Consensus 201 l~~l~~gd~~~A~~~~~~~~~l---------l~a~~~~d~~~~~~~~~~~~~~~~ld~~~~~~l~~~~~~~ 262 (273)
.++...|++++|...+++...+ .-+........+.+++..|..+..++|.+.++...+.+..
T Consensus 651 ~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~ 721 (987)
T PRK09782 651 YALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQN 721 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHH
Confidence 9999999999999999986511 1122223345577888899999999999988877666544
No 32
>PRK12370 invasion protein regulator; Provisional
Probab=99.22 E-value=8.1e-10 Score=103.77 Aligned_cols=149 Identities=11% Similarity=-0.087 Sum_probs=107.7
Q ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcC
Q 024043 48 SWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEH 126 (273)
Q Consensus 48 ~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g 126 (273)
++++|..++.+++++... -+.++..+|.++... ++++|+.+|++|+.+.... +.++..+|.++...|
T Consensus 319 ~~~~A~~~~~~Al~ldP~------~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~------~~a~~~lg~~l~~~G 386 (553)
T PRK12370 319 AMIKAKEHAIKATELDHN------NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPIS------ADIKYYYGWNLFMAG 386 (553)
T ss_pred HHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCC
Confidence 477888888888777322 234566778887665 8999999999998875433 347788899999999
Q ss_pred CHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhc
Q 024043 127 NIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCK 206 (273)
Q Consensus 127 ~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~ 206 (273)
++++|+.++++|+++..... .+....+.++...|++++|+..+++++.....+ ....+..+|.++...
T Consensus 387 ~~~eAi~~~~~Al~l~P~~~------~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~------~~~~~~~la~~l~~~ 454 (553)
T PRK12370 387 QLEEALQTINECLKLDPTRA------AAGITKLWITYYHTGIDDAIRLGDELRSQHLQD------NPILLSMQVMFLSLK 454 (553)
T ss_pred CHHHHHHHHHHHHhcCCCCh------hhHHHHHHHHHhccCHHHHHHHHHHHHHhcccc------CHHHHHHHHHHHHhC
Confidence 99999999999998865421 123334555667889999999998876442111 122456778888889
Q ss_pred CCHHHHHHHHHHHH
Q 024043 207 GDVVAITNALERYQ 220 (273)
Q Consensus 207 gd~~~A~~~~~~~~ 220 (273)
|++++|...+.+..
T Consensus 455 G~~~eA~~~~~~~~ 468 (553)
T PRK12370 455 GKHELARKLTKEIS 468 (553)
T ss_pred CCHHHHHHHHHHhh
Confidence 99999999888754
No 33
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.19 E-value=1.6e-09 Score=105.83 Aligned_cols=133 Identities=14% Similarity=0.197 Sum_probs=83.4
Q ss_pred HHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC------
Q 024043 74 QAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEE------ 146 (273)
Q Consensus 74 ~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~------ 146 (273)
..+..+|.++... ++++|+.+|++++...... ...+..+|.++...|++++|+.+|++++.+.+...
T Consensus 602 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 675 (899)
T TIGR02917 602 EAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDS------ALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGL 675 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 3455667777666 8888888888887654322 24677788888888888888888888877644310
Q ss_pred --------C--------------cccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHH
Q 024043 147 --------V--------------TTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQL 204 (273)
Q Consensus 147 --------~--------------~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l 204 (273)
+ .......+..+|.++...|++++|++.|++++...+.+ ..+..++.++.
T Consensus 676 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~--------~~~~~l~~~~~ 747 (899)
T TIGR02917 676 AQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS--------QNAIKLHRALL 747 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc--------hHHHHHHHHHH
Confidence 0 01122345556677777777777777777765433222 23344556666
Q ss_pred hcCCHHHHHHHHHHHH
Q 024043 205 CKGDVVAITNALERYQ 220 (273)
Q Consensus 205 ~~gd~~~A~~~~~~~~ 220 (273)
..|++.+|...++++.
T Consensus 748 ~~g~~~~A~~~~~~~l 763 (899)
T TIGR02917 748 ASGNTAEAVKTLEAWL 763 (899)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 6666666666666543
No 34
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.19 E-value=2.9e-10 Score=78.23 Aligned_cols=74 Identities=24% Similarity=0.437 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 024043 70 HEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSM-AARYYKEIAELYESEHNIEQTIVFFEKAADMFQ 143 (273)
Q Consensus 70 ~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~-~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~ 143 (273)
+..+.++.++|.+|... ++++|+++|++|+.+....|+... .+.++.++|.++..+|++++|+++|++|+++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 34566777777777766 777777777777777666776543 577777777777777777777777777777765
No 35
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.16 E-value=3.2e-09 Score=92.01 Aligned_cols=131 Identities=10% Similarity=-0.057 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCCh
Q 024043 30 EDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRL 108 (273)
Q Consensus 30 ~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~ 108 (273)
+.-...|...|.+|...|++++|...|.+++.+... -..++..+|.++... ++++|+..|++++++....
T Consensus 61 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~------~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~--- 131 (296)
T PRK11189 61 EERAQLHYERGVLYDSLGLRALARNDFSQALALRPD------MADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTY--- 131 (296)
T ss_pred HhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---
Confidence 344456667799999999999999999999987432 246889999999887 9999999999999886544
Q ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 024043 109 SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIA 179 (273)
Q Consensus 109 ~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~ 179 (273)
+.++.++|.++...|++++|++.+++++.+..... . ...+. .+....+++++|+..|.+.+
T Consensus 132 ---~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~--~--~~~~~---~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 132 ---NYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP--Y--RALWL---YLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred ---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--H--HHHHH---HHHHccCCHHHHHHHHHHHH
Confidence 34789999999999999999999999998765432 1 11111 22345678999999887754
No 36
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.12 E-value=5.6e-09 Score=106.00 Aligned_cols=134 Identities=12% Similarity=0.089 Sum_probs=107.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhH--------
Q 024043 40 ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSM-------- 110 (273)
Q Consensus 40 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~-------- 110 (273)
|.++...|++++|+..|.+++...... ..++..+|.+|... ++++|+.+|++++.+.........
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~~------~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~ 349 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPKD------SEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVN 349 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhh
Confidence 677888999999999999999875322 46788899999877 999999999999988765543211
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043 111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN 185 (273)
Q Consensus 111 ~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~ 185 (273)
....+...|.++...|++++|+.+|++|+.+.... ..++..+|.++...|++++|++.|++++...+++
T Consensus 350 ~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~------~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~ 418 (1157)
T PRK11447 350 RYWLLIQQGDAALKANNLAQAERLYQQARQVDNTD------SYAVLGLGDVAMARKDYAAAERYYQQALRMDPGN 418 (1157)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 12234466888889999999999999999985422 3568899999999999999999999998655443
No 37
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.10 E-value=9.5e-09 Score=85.80 Aligned_cols=164 Identities=15% Similarity=0.162 Sum_probs=120.4
Q ss_pred hhHHHHHHHHHHhhccccCCCCCHHHHHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Q 024043 6 ARAEEFEKKAEKKLNGWGLFGSKYEDAADLF-----------------DKAANSFKLAKSWDKAGATYVKLANCHLKLES 68 (273)
Q Consensus 6 ~~a~~l~~~Aek~~k~~~~~~~~~~~A~~~~-----------------~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 68 (273)
..+..++..|...++ .++|++|...| ...|.+|...|++++|+..|.++++.+.....
T Consensus 31 ~~~~~~~~~g~~~~~-----~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 105 (235)
T TIGR03302 31 WPAEELYEEAKEALD-----SGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPD 105 (235)
T ss_pred CCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc
Confidence 356666666666555 12344444443 34477888999999999999999988754332
Q ss_pred HHHHHHHHHHHHHHHhcc---------CHHHHHHHHHHHHHHHHhcCChhHH-----------HHHHHHHHHHHHhcCCH
Q 024043 69 KHEAAQAYVDAAHCYKKT---------SSNEAISCLEQAVNMFCDIGRLSMA-----------ARYYKEIAELYESEHNI 128 (273)
Q Consensus 69 ~~~aa~~~~~~~~~~~~~---------~~~eA~~~~~~Al~~~~~~g~~~~~-----------a~~l~~lg~~~~~~g~~ 128 (273)
...++..+|.++... ++++|++.|++++..++.......+ +.....+|.+|...|++
T Consensus 106 ---~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~ 182 (235)
T TIGR03302 106 ---ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAY 182 (235)
T ss_pred ---hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCh
Confidence 234566777777542 6889999999999887765443211 12234788899999999
Q ss_pred HHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 024043 129 EQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIAR 180 (273)
Q Consensus 129 ~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~ 180 (273)
.+|+..|+++++.+... .....++..+|.++..+|++++|+.+++....
T Consensus 183 ~~A~~~~~~al~~~p~~---~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 183 VAAINRFETVVENYPDT---PATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHHHHHHCCCC---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999998764 23457899999999999999999999888753
No 38
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=2.4e-09 Score=96.23 Aligned_cols=173 Identities=13% Similarity=0.139 Sum_probs=132.1
Q ss_pred CCchHhhHHHHHHHHHHhhcc----ccC----CC--CCHHHHHHHHHHHHH--------------HHHHcCCHHHHHHHH
Q 024043 1 MGDQIARAEEFEKKAEKKLNG----WGL----FG--SKYEDAADLFDKAAN--------------SFKLAKSWDKAGATY 56 (273)
Q Consensus 1 ~~~~~~~a~~l~~~Aek~~k~----~~~----~~--~~~~~A~~~~~~a~~--------------~~~~~~~~~~A~~~~ 56 (273)
|.+..++|+.++-||=-+=++ |-- |. +..|+|..+|..|+. -|...+++.-|-.+|
T Consensus 324 ~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff 403 (611)
T KOG1173|consen 324 MIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFF 403 (611)
T ss_pred HhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHH
Confidence 344567788888777654442 311 22 677888888887743 466677888888888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhH-HHHHHHHHHHHHHhcCCHHHHHHH
Q 024043 57 VKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSM-AARYYKEIAELYESEHNIEQTIVF 134 (273)
Q Consensus 57 ~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~-~a~~l~~lg~~~~~~g~~~~A~~~ 134 (273)
.+|..+...-. -++.++|-++... .+.+|+.+|+.++...+..+.... =.-.+.++|.++.+++.+++|+.+
T Consensus 404 ~~A~ai~P~Dp------lv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 404 KQALAIAPSDP------LVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHhcCCCcc------hhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 88887764322 3567788877655 999999999999977776655332 344689999999999999999999
Q ss_pred HHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043 135 FEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN 185 (273)
Q Consensus 135 y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~ 185 (273)
|++|+.+-... ..++..+|-+|..+|+++.|++.|.+++...+.+
T Consensus 478 ~q~aL~l~~k~------~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n 522 (611)
T KOG1173|consen 478 YQKALLLSPKD------ASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN 522 (611)
T ss_pred HHHHHHcCCCc------hhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence 99999986543 4678899999999999999999999998666655
No 39
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=3.8e-08 Score=88.17 Aligned_cols=219 Identities=12% Similarity=0.196 Sum_probs=156.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhH
Q 024043 32 AADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSM 110 (273)
Q Consensus 32 A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~ 110 (273)
...-..++|+......++..|+.+|.+++++...++.....+.+|..++....-. ..+.|++--++... +...
T Consensus 223 ~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~ra------d~kl 296 (539)
T KOG0548|consen 223 KAHKEKELGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRA------DYKL 296 (539)
T ss_pred hhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHH------HHHH
Confidence 4456667899999999999999999999999866665555555555555443332 33334443333322 3334
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCC--------------------cccHHHHHHHHHHHHHHhcCHHH
Q 024043 111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEV--------------------TTSANQCKQKVAQYAAELEQYHK 170 (273)
Q Consensus 111 ~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~--------------------~~~~~~~~~~~a~~~~~~g~y~~ 170 (273)
.++++..+|..|..+++++.++.+|++++.-++.... ....+.-...-|..++..|+|..
T Consensus 297 Iak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~ 376 (539)
T KOG0548|consen 297 IAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPE 376 (539)
T ss_pred HHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHH
Confidence 7888889999999999999999999999988775110 00112223344777888999999
Q ss_pred HHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH----HHHH-----HHhhcCHhHHHHHHHhh
Q 024043 171 SIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ----DIAA-----SMDEEDIAKFTDVVKEF 241 (273)
Q Consensus 171 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~----~ll~-----a~~~~d~~~~~~~~~~~ 241 (273)
|+..|.+++.+.+.+. ..|-|.++||+..|.+..|....+... ..+. +....-...+..++..|
T Consensus 377 Av~~YteAIkr~P~Da-------~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay 449 (539)
T KOG0548|consen 377 AVKHYTEAIKRDPEDA-------RLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAY 449 (539)
T ss_pred HHHHHHHHHhcCCchh-------HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998777664 256678899999999888877655543 1222 22334456788888889
Q ss_pred hccCCCchhHHHHHHHHHHhcc
Q 024043 242 DSMTPLDPWKTTLLLRVKEKLK 263 (273)
Q Consensus 242 ~~~~~ld~~~~~~l~~~~~~~~ 263 (273)
.....+||-...++..+++-++
T Consensus 450 ~eale~dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 450 QEALELDPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHhcCchhHHHHHHHHHHHH
Confidence 9999999999999999888665
No 40
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.09 E-value=1.9e-09 Score=98.42 Aligned_cols=175 Identities=15% Similarity=0.119 Sum_probs=134.1
Q ss_pred CCHHHHHHHHHHHH-------HHHHHcCCHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHH
Q 024043 27 SKYEDAADLFDKAA-------NSFKLAKSWDKAGATYVKLANCHL-KLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQ 97 (273)
Q Consensus 27 ~~~~~A~~~~~~a~-------~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~ 97 (273)
.|++.|+.+|++|. -.|..+|.-.-+.+-|++|..+|+ .++-...--.++.-+|.+|.+. +++.|.-+|++
T Consensus 435 kdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqk 514 (638)
T KOG1126|consen 435 KDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQK 514 (638)
T ss_pred hHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHh
Confidence 79999999999985 346666654444444444444443 1222233346788999999888 99999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 024043 98 AVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEE 177 (273)
Q Consensus 98 Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~ 177 (273)
|+++...+- ..+..+|.++..+|+.++|+++|++|+.+-..+ .-+....|.++..+++|++|+..+++
T Consensus 515 A~~INP~ns------vi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn------~l~~~~~~~il~~~~~~~eal~~LEe 582 (638)
T KOG1126|consen 515 AVEINPSNS------VILCHIGRIQHQLKRKDKALQLYEKAIHLDPKN------PLCKYHRASILFSLGRYVEALQELEE 582 (638)
T ss_pred hhcCCccch------hHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCC------chhHHHHHHHHHhhcchHHHHHHHHH
Confidence 999987664 378889999999999999999999999885543 25678889999999999999999999
Q ss_pred HHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043 178 IARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ 220 (273)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~ 220 (273)
.-...+.+ ...++-+|.+|-..|....|...|.-..
T Consensus 583 Lk~~vP~e-------s~v~~llgki~k~~~~~~~Al~~f~~A~ 618 (638)
T KOG1126|consen 583 LKELVPQE-------SSVFALLGKIYKRLGNTDLALLHFSWAL 618 (638)
T ss_pred HHHhCcch-------HHHHHHHHHHHHHHccchHHHHhhHHHh
Confidence 85544443 2356778999999999888887776653
No 41
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=6.7e-09 Score=91.50 Aligned_cols=163 Identities=17% Similarity=0.256 Sum_probs=98.0
Q ss_pred HhhHHHHHHHHHHhhcc-ccCC---C------CCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHH
Q 024043 5 IARAEEFEKKAEKKLNG-WGLF---G------SKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLA 60 (273)
Q Consensus 5 ~~~a~~l~~~Aek~~k~-~~~~---~------~~~~~A~~~~~~a--------------~~~~~~~~~~~~A~~~~~~a~ 60 (273)
.++|..+++.|=|+=++ .+.| | .+...|++.|++| |..|...+.+.-|+-+|++|.
T Consensus 346 HEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~ 425 (559)
T KOG1155|consen 346 HEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKAL 425 (559)
T ss_pred HHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHH
Confidence 46666666666665442 1222 2 3555666666655 455666666666666666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043 61 NCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAA 139 (273)
Q Consensus 61 ~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al 139 (273)
.+- -.| .+.+.-+|.||.+. ++++|+.||.+|+..-... +.++..+|.+|++++++.+|..+|++-+
T Consensus 426 ~~k--PnD----sRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte------~~~l~~LakLye~l~d~~eAa~~yek~v 493 (559)
T KOG1155|consen 426 ELK--PND----SRLWVALGECYEKLNRLEEAIKCYKRAILLGDTE------GSALVRLAKLYEELKDLNEAAQYYEKYV 493 (559)
T ss_pred hcC--CCc----hHHHHHHHHHHHHhccHHHHHHHHHHHHhccccc------hHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 552 112 13556677777666 7777777777776654333 3377777777777777777777777777
Q ss_pred HHHhccCCc-ccHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 024043 140 DMFQNEEVT-TSANQCKQKVAQYAAELEQYHKSIEIYEEIA 179 (273)
Q Consensus 140 ~~~~~~~~~-~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~ 179 (273)
+.....|.. .....+..-++.-+.+.++|++|..+..++.
T Consensus 494 ~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 494 EVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred HHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 766444432 1122334446677777777777777666553
No 42
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=7e-09 Score=93.31 Aligned_cols=175 Identities=17% Similarity=0.172 Sum_probs=124.2
Q ss_pred CCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHH
Q 024043 27 SKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEA 91 (273)
Q Consensus 27 ~~~~~A~~~~~~a--------------~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA 91 (273)
+++.+|..+|.++ |..|...+..++|+.+|..|..++....-| +.-+|.=|-.. .+.-|
T Consensus 326 ~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP------~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 326 GKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLP------SLYLGMEYMRTNNLKLA 399 (611)
T ss_pred cCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcch------HHHHHHHHHHhccHHHH
Confidence 4555555555554 345555566666666666666665433322 11233333333 56667
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcc-cHHHHHHHHHHHHHHhcCHHH
Q 024043 92 ISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTT-SANQCKQKVAQYAAELEQYHK 170 (273)
Q Consensus 92 ~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~-~~~~~~~~~a~~~~~~g~y~~ 170 (273)
-.+|.+|+.+.+..- -++..+|.+....+.|.+|..+|+.+++..+...... .-...+.++|-++.++++|++
T Consensus 400 e~Ff~~A~ai~P~Dp------lv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e 473 (611)
T KOG1173|consen 400 EKFFKQALAIAPSDP------LVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE 473 (611)
T ss_pred HHHHHHHHhcCCCcc------hhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence 777777777665432 3788889888878999999999999998887765532 123568999999999999999
Q ss_pred HHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043 171 SIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ 220 (273)
Q Consensus 171 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~ 220 (273)
|+.+|++++...+.+. .++..+|.||...|+++.|...|.+..
T Consensus 474 AI~~~q~aL~l~~k~~-------~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 474 AIDYYQKALLLSPKDA-------STHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHHHHHHHHcCCCch-------hHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 9999999987665542 356678999999999999999999865
No 43
>PRK12370 invasion protein regulator; Provisional
Probab=99.05 E-value=1.3e-08 Score=95.63 Aligned_cols=165 Identities=9% Similarity=0.025 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc----------CHHHHHHHHHHH
Q 024043 31 DAADLFDKAANSFK--LAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT----------SSNEAISCLEQA 98 (273)
Q Consensus 31 ~A~~~~~~a~~~~~--~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~----------~~~eA~~~~~~A 98 (273)
+|..+|-++-..+. ..+++++|+.+|.+|+++.... +.++..+|.+|... ++++|+.++++|
T Consensus 257 da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~------a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~A 330 (553)
T PRK12370 257 DSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNS------IAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKA 330 (553)
T ss_pred HHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCcc------HHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHH
Confidence 44456655432222 2345789999999998774321 34556666655321 479999999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 024043 99 VNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEI 178 (273)
Q Consensus 99 l~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~ 178 (273)
+++-... +.++..+|.++...|++++|+.+|++|+++... ...++..+|.++...|++++|+..|+++
T Consensus 331 l~ldP~~------~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~------~~~a~~~lg~~l~~~G~~~eAi~~~~~A 398 (553)
T PRK12370 331 TELDHNN------PQALGLLGLINTIHSEYIVGSLLFKQANLLSPI------SADIKYYYGWNLFMAGQLEEALQTINEC 398 (553)
T ss_pred HhcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9885443 347888999999999999999999999998543 2457889999999999999999999999
Q ss_pred HHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043 179 ARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ 220 (273)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~ 220 (273)
+...+.++. .....+.++...|++++|...+++..
T Consensus 399 l~l~P~~~~-------~~~~~~~~~~~~g~~eeA~~~~~~~l 433 (553)
T PRK12370 399 LKLDPTRAA-------AGITKLWITYYHTGIDDAIRLGDELR 433 (553)
T ss_pred HhcCCCChh-------hHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 876555421 11223344666889999988887653
No 44
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.05 E-value=2.3e-07 Score=92.19 Aligned_cols=180 Identities=12% Similarity=-0.026 Sum_probs=142.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHH
Q 024043 39 AANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKE 117 (273)
Q Consensus 39 a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~ 117 (273)
.+.++...|++++|...+.++.... ..++....+.+...+|.++... ++++|..++++++......|+....+.++.+
T Consensus 458 ~a~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~ 536 (903)
T PRK04841 458 RAQVAINDGDPEEAERLAELALAEL-PLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQ 536 (903)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcC-CCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHH
Confidence 4567778999999999999998753 2334455566677788888666 9999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhccCCc--ccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhH
Q 024043 118 IAELYESEHNIEQTIVFFEKAADMFQNEEVT--TSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGH 195 (273)
Q Consensus 118 lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~--~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~ 195 (273)
+|.++...|++++|..++++++++.+..+.. .....++..+|.++...|++++|...+++++....... .......
T Consensus 537 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~--~~~~~~~ 614 (903)
T PRK04841 537 QSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQ--PQQQLQC 614 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccC--chHHHHH
Confidence 9999999999999999999999998876532 22234466789999999999999999999864422211 1112234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 024043 196 LLNAGICQLCKGDVVAITNALERYQD 221 (273)
Q Consensus 196 ~~~~gl~~l~~gd~~~A~~~~~~~~~ 221 (273)
+..++.+++..||+..|.+.++....
T Consensus 615 ~~~la~~~~~~G~~~~A~~~l~~a~~ 640 (903)
T PRK04841 615 LAMLAKISLARGDLDNARRYLNRLEN 640 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55677889999999999988887653
No 45
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.04 E-value=2.8e-09 Score=73.28 Aligned_cols=72 Identities=17% Similarity=0.326 Sum_probs=64.1
Q ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCc-ccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 024043 109 SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVT-TSANQCKQKVAQYAAELEQYHKSIEIYEEIAR 180 (273)
Q Consensus 109 ~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~-~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~ 180 (273)
...+.++.++|.+|..+|++++|+.+|++|+++.+..++. ...+.++.++|.++..+|++++|+++|++++.
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3467899999999999999999999999999997777764 45689999999999999999999999999964
No 46
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.04 E-value=5.9e-08 Score=82.19 Aligned_cols=184 Identities=20% Similarity=0.165 Sum_probs=123.8
Q ss_pred CCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHH-----------------------------
Q 024043 24 LFGSKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLA----------------------------- 60 (273)
Q Consensus 24 ~~~~~~~~A~~~~~~a--------------~~~~~~~~~~~~A~~~~~~a~----------------------------- 60 (273)
+.+...++|+++|... |++|+..|..|.|+..++...
T Consensus 46 LLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 46 LLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred HhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 4566778999888763 889999999998888554332
Q ss_pred --HHHHHcCC-HHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 024043 61 --NCHLKLES-KHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFE 136 (273)
Q Consensus 61 --~~~~~~~~-~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~ 136 (273)
+++..+-+ +..+-.++..+..+|... ++++||+.-++-..+-. .......|..+..++..+....+.+.|+..+.
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~-q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGG-QTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCC-ccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 22221111 222333344444455444 55555555444333221 12344567888888888888899999999999
Q ss_pred HHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHH
Q 024043 137 KAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNAL 216 (273)
Q Consensus 137 ~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~ 216 (273)
+|+...... ..+-..+|.+....|+|+.|++.++++....+. -..+.+-.+-.||...|+.......+
T Consensus 205 kAlqa~~~c------vRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~------yl~evl~~L~~~Y~~lg~~~~~~~fL 272 (389)
T COG2956 205 KALQADKKC------VRASIILGRVELAKGDYQKAVEALERVLEQNPE------YLSEVLEMLYECYAQLGKPAEGLNFL 272 (389)
T ss_pred HHHhhCccc------eehhhhhhHHHHhccchHHHHHHHHHHHHhChH------HHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999775433 234567899999999999999999999753332 13345556678999999999988888
Q ss_pred HHHH
Q 024043 217 ERYQ 220 (273)
Q Consensus 217 ~~~~ 220 (273)
.++.
T Consensus 273 ~~~~ 276 (389)
T COG2956 273 RRAM 276 (389)
T ss_pred HHHH
Confidence 8776
No 47
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.03 E-value=7.8e-08 Score=91.37 Aligned_cols=208 Identities=16% Similarity=0.159 Sum_probs=142.4
Q ss_pred hHhhHHHHHHHHHHhhc----------cccCCCCCHHHHHHHHHHH-----------------HHHHHHcCCHHHHHHHH
Q 024043 4 QIARAEEFEKKAEKKLN----------GWGLFGSKYEDAADLFDKA-----------------ANSFKLAKSWDKAGATY 56 (273)
Q Consensus 4 ~~~~a~~l~~~Aek~~k----------~~~~~~~~~~~A~~~~~~a-----------------~~~~~~~~~~~~A~~~~ 56 (273)
....+..++..|.+.=. +-+||++||+.++.++..+ |.+|...|+|++|..+|
T Consensus 251 s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY 330 (1018)
T KOG2002|consen 251 SYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYY 330 (1018)
T ss_pred HHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 35677778888777443 2247889999999988765 77899999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhc--------------C---------------
Q 024043 57 VKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI--------------G--------------- 106 (273)
Q Consensus 57 ~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~--------------g--------------- 106 (273)
.++..+.... -.-.+..+|.+|... +++.|+-||++.+..++.. +
T Consensus 331 ~~s~k~~~d~-----~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K 405 (1018)
T KOG2002|consen 331 MESLKADNDN-----FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGK 405 (1018)
T ss_pred HHHHccCCCC-----ccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHH
Confidence 9998764322 122334445555333 5555555555443322111 0
Q ss_pred ---ChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-
Q 024043 107 ---RLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQS- 182 (273)
Q Consensus 107 ---~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~- 182 (273)
....-..+|..++.+++. +++-.++..|.+|+++++..+.. --..+++++|..++.+|.+.+|.+.|.++....
T Consensus 406 ~~~~~~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~-ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~ 483 (1018)
T KOG2002|consen 406 VLEQTPVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQ-IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLL 483 (1018)
T ss_pred HHhcccccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCC-CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhh
Confidence 011224578899999988 88888899999999999988876 346889999999999999999999999996441
Q ss_pred --hccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHH
Q 024043 183 --LNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALER 218 (273)
Q Consensus 183 --~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~ 218 (273)
.+...++.-.-..-++++.|.-..+++..|.+.+..
T Consensus 484 ~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~ 521 (1018)
T KOG2002|consen 484 EVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKS 521 (1018)
T ss_pred hhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 111110000112346777887788888888776665
No 48
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.02 E-value=4.4e-08 Score=84.88 Aligned_cols=150 Identities=13% Similarity=0.039 Sum_probs=113.7
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhc
Q 024043 47 KSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE 125 (273)
Q Consensus 47 ~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~ 125 (273)
+..+.++..+.+.+.-. --++...+..+.+.|.+|... ++++|+..|++|+.+.... +.++.++|.++...
T Consensus 40 ~~~e~~i~~~~~~l~~~--~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~------~~a~~~lg~~~~~~ 111 (296)
T PRK11189 40 LQQEVILARLNQILASR--DLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDM------ADAYNYLGIYLTQA 111 (296)
T ss_pred hHHHHHHHHHHHHHccc--cCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHC
Confidence 45567777777766432 124456678899999999877 9999999999999986543 46999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHh
Q 024043 126 HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLC 205 (273)
Q Consensus 126 g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~ 205 (273)
|++++|+..|++|+++.... ..++.++|.++...|++++|++.|++++...++++. ...+. .+...
T Consensus 112 g~~~~A~~~~~~Al~l~P~~------~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~-----~~~~~---~l~~~ 177 (296)
T PRK11189 112 GNFDAAYEAFDSVLELDPTY------NYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY-----RALWL---YLAES 177 (296)
T ss_pred CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-----HHHHH---HHHHc
Confidence 99999999999999986432 357899999999999999999999999876665531 11111 12234
Q ss_pred cCCHHHHHHHHHH
Q 024043 206 KGDVVAITNALER 218 (273)
Q Consensus 206 ~gd~~~A~~~~~~ 218 (273)
.+++.+|...+++
T Consensus 178 ~~~~~~A~~~l~~ 190 (296)
T PRK11189 178 KLDPKQAKENLKQ 190 (296)
T ss_pred cCCHHHHHHHHHH
Confidence 5677777777754
No 49
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.00 E-value=6.2e-09 Score=89.41 Aligned_cols=167 Identities=16% Similarity=0.192 Sum_probs=72.6
Q ss_pred CCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHH
Q 024043 27 SKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEA 91 (273)
Q Consensus 27 ~~~~~A~~~~~~a--------------~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA 91 (273)
++++.|...|.++ +.+ ...+++++|+..++++.+- .+++ ..+..+..++... +++++
T Consensus 58 ~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~---~~~~----~~l~~~l~~~~~~~~~~~~ 129 (280)
T PF13429_consen 58 GDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYER---DGDP----RYLLSALQLYYRLGDYDEA 129 (280)
T ss_dssp --------------------------------------------------------------------H-HHHTT-HHHH
T ss_pred cccccccccccccccccccccccccccccc-ccccccccccccccccccc---cccc----chhhHHHHHHHHHhHHHHH
Confidence 6777777777753 333 4667777777777665432 2222 3344455555544 77777
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHH
Q 024043 92 ISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKS 171 (273)
Q Consensus 92 ~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A 171 (273)
.+.+.++.. .......+..+...|.++...|++++|+.+|++|+++.+.+ ..++..++.+++..|+++++
T Consensus 130 ~~~l~~~~~----~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~------~~~~~~l~~~li~~~~~~~~ 199 (280)
T PF13429_consen 130 EELLEKLEE----LPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDD------PDARNALAWLLIDMGDYDEA 199 (280)
T ss_dssp HHHHHHHHH-----T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-------HHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHh----ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHCCChHHH
Confidence 777777553 23333556677778888887788888888888888776543 24566677777777777776
Q ss_pred HHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHH
Q 024043 172 IEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALER 218 (273)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~ 218 (273)
.+.+.......+.++. .+..++.++...|++.+|...+++
T Consensus 200 ~~~l~~~~~~~~~~~~-------~~~~la~~~~~lg~~~~Al~~~~~ 239 (280)
T PF13429_consen 200 REALKRLLKAAPDDPD-------LWDALAAAYLQLGRYEEALEYLEK 239 (280)
T ss_dssp HHHHHHHHHH-HTSCC-------HCHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHHHCcCHHH-------HHHHHHHHhccccccccccccccc
Confidence 6666665443333321 334456667777777777776664
No 50
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.97 E-value=4.1e-08 Score=84.37 Aligned_cols=147 Identities=14% Similarity=0.096 Sum_probs=132.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcC--Chh--HHHH
Q 024043 39 AANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIG--RLS--MAAR 113 (273)
Q Consensus 39 a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g--~~~--~~a~ 113 (273)
.++.|.-.+.++++++.|++|..+...++|+.-.-+++..+|..|-.. |+++|+-+..+|.++....+ |.. -.+.
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 578888899999999999999999999999999999999999999888 99999999999999998765 332 3466
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHHhcc
Q 024043 114 YYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIA--RQSLNN 185 (273)
Q Consensus 114 ~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~--~~~~~~ 185 (273)
++..++..+...|+.-.|.++.++|..+.-..|+....+.|+.-+|+||...|+.+.|..-|+.+. ...+|+
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gd 281 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGD 281 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhh
Confidence 888999999999999999999999999999999988889999999999999999999999999994 335555
No 51
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.93 E-value=1.9e-07 Score=88.81 Aligned_cols=173 Identities=15% Similarity=0.143 Sum_probs=130.3
Q ss_pred CCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc----C
Q 024043 27 SKYEDAADLFDKA---------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT----S 87 (273)
Q Consensus 27 ~~~~~A~~~~~~a---------------~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~----~ 87 (273)
+||-.|..+|..+ |-||...++.+.|+.+|++++.+-. ..+.++.-+|.+-... .
T Consensus 178 kdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp------~~v~alv~L~~~~l~~~d~~s 251 (1018)
T KOG2002|consen 178 KDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDP------TCVSALVALGEVDLNFNDSDS 251 (1018)
T ss_pred ccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcCh------hhHHHHHHHHHHHHHccchHH
Confidence 7888888888875 5688888899999999998888743 3344555555544332 5
Q ss_pred HHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcC
Q 024043 88 SNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQ 167 (273)
Q Consensus 88 ~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~ 167 (273)
+..++..+.+|..+...+-+ +++.++..|.-.|+|..+...+..|+..... ....+..+..+|..|..+|+
T Consensus 252 ~~~~~~ll~~ay~~n~~nP~------~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~---~~~~aes~Y~~gRs~Ha~Gd 322 (1018)
T KOG2002|consen 252 YKKGVQLLQRAYKENNENPV------ALNHLANHFYFKKDYERVWHLAEHAIKNTEN---KSIKAESFYQLGRSYHAQGD 322 (1018)
T ss_pred HHHHHHHHHHHHhhcCCCcH------HHHHHHHHHhhcccHHHHHHHHHHHHHhhhh---hHHHHHHHHHHHHHHHhhcc
Confidence 67788888887776655544 8888888888889999999999988876522 23446778999999999999
Q ss_pred HHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043 168 YHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ 220 (273)
Q Consensus 168 y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~ 220 (273)
|++|..+|.++.....++ .--.++.+|-+++..||+..+..+|+...
T Consensus 323 ~ekA~~yY~~s~k~~~d~------~~l~~~GlgQm~i~~~dle~s~~~fEkv~ 369 (1018)
T KOG2002|consen 323 FEKAFKYYMESLKADNDN------FVLPLVGLGQMYIKRGDLEESKFCFEKVL 369 (1018)
T ss_pred HHHHHHHHHHHHccCCCC------ccccccchhHHHHHhchHHHHHHHHHHHH
Confidence 999999999987543333 11234667888999999999999998754
No 52
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.93 E-value=1.1e-06 Score=87.37 Aligned_cols=140 Identities=11% Similarity=0.042 Sum_probs=119.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCCh--hHHHHHH
Q 024043 39 AANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRL--SMAARYY 115 (273)
Q Consensus 39 a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~--~~~a~~l 115 (273)
.|.++...|++++|...+.++....+..++....+.++..++.++... ++++|..++++++.+....|.. ...+..+
T Consensus 497 lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 576 (903)
T PRK04841 497 LGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLL 576 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHH
Confidence 456677899999999999999999999999888888999999998777 9999999999999999887643 2334556
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 024043 116 KEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIA 179 (273)
Q Consensus 116 ~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~ 179 (273)
..+|.++...|++++|..++.+++++.+..+. .....++..+|.++...|++++|...++++.
T Consensus 577 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~ 639 (903)
T PRK04841 577 RIRAQLLWEWARLDEAEQCARKGLEVLSNYQP-QQQLQCLAMLAKISLARGDLDNARRYLNRLE 639 (903)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhHHhhhccCc-hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77899998899999999999999999886553 3345677889999999999999999998874
No 53
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.91 E-value=2.6e-08 Score=76.97 Aligned_cols=99 Identities=9% Similarity=-0.038 Sum_probs=82.0
Q ss_pred HHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHH
Q 024043 76 YVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQC 154 (273)
Q Consensus 76 ~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~ 154 (273)
+...|.++... ++++|+.+|++++.+-... ..++.++|.++...|++++|+.+|++|+++.... ...
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~------~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~------~~a 94 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWS------WRAHIALAGTWMMLKEYTTAINFYGHALMLDASH------PEP 94 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC------cHH
Confidence 33456666555 9999999999998775433 4689999999999999999999999999875422 467
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhccc
Q 024043 155 KQKVAQYAAELEQYHKSIEIYEEIARQSLNNN 186 (273)
Q Consensus 155 ~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~ 186 (273)
+.++|.++..+|++++|++.|++++...++++
T Consensus 95 ~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~ 126 (144)
T PRK15359 95 VYQTGVCLKMMGEPGLAREAFQTAIKMSYADA 126 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence 99999999999999999999999987766653
No 54
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=1.2e-07 Score=84.32 Aligned_cols=201 Identities=15% Similarity=0.206 Sum_probs=137.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHH
Q 024043 36 FDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARY 114 (273)
Q Consensus 36 ~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~ 114 (273)
|...+.+|....+..+-...|.+|..+-....+ +|..-|.++.-+ ++++|+.-|++|+.+-.+. +-.
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~d------vYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~------~~~ 430 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLDPENPD------VYYHRGQMRFLLQQYEEAIADFQKAISLDPEN------AYA 430 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCc------hhHhHHHHHHHHHHHHHHHHHHHHHhhcChhh------hHH
Confidence 334466677777788888888888877655443 566677777666 8899999999998876554 346
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhh
Q 024043 115 YKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKG 194 (273)
Q Consensus 115 l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~ 194 (273)
+..++-+...++.+++++..|+.+..-|+ ...+++.-.|.++..++++++|++.|..++.........-.+..-
T Consensus 431 ~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP------~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~p 504 (606)
T KOG0547|consen 431 YIQLCCALYRQHKIAESMKTFEEAKKKFP------NCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAP 504 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCC------CCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchh
Confidence 67777777777889999999999888885 445889999999999999999999999998655443222233433
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH----------HHHHHhhcCHhHHHHHHHhhhccCCCchhHHHHH
Q 024043 195 HLLNAGICQLCKGDVVAITNALERYQD----------IAASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLL 255 (273)
Q Consensus 195 ~~~~~gl~~l~~gd~~~A~~~~~~~~~----------ll~a~~~~d~~~~~~~~~~~~~~~~ld~~~~~~l 255 (273)
...++.++..-.+|+.+|.+.+++... -+..++. -.+.++++|.-|.+...|-.-+..|+
T Consensus 505 lV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~l-Q~~~i~eAielFEksa~lArt~~E~~ 574 (606)
T KOG0547|consen 505 LVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFEL-QRGKIDEAIELFEKSAQLARTESEMV 574 (606)
T ss_pred hhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 444454554456889999888887651 1111111 12456667766666555544444333
No 55
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.89 E-value=7.1e-08 Score=81.93 Aligned_cols=169 Identities=8% Similarity=0.091 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHH
Q 024043 35 LFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAAR 113 (273)
Q Consensus 35 ~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~ 113 (273)
+=.+.|.||...|.+.+|-..+..+++-++.. ..|.-++.+|... +|..|+..+.+-++.+. ..-.
T Consensus 225 Wk~Q~gkCylrLgm~r~AekqlqssL~q~~~~-------dTfllLskvY~ridQP~~AL~~~~~gld~fP------~~VT 291 (478)
T KOG1129|consen 225 WKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHP-------DTFLLLSKVYQRIDQPERALLVIGEGLDSFP------FDVT 291 (478)
T ss_pred HHHHHHHHHHHhcChhhhHHHHHHHhhcCCch-------hHHHHHHHHHHHhccHHHHHHHHhhhhhcCC------chhh
Confidence 44577999999999999999999888765432 3677778888777 88888888777766553 2234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHh---------------------------cc-CCcccHHHHHHHHHHHHHHh
Q 024043 114 YYKEIAELYESEHNIEQTIVFFEKAADMFQ---------------------------NE-EVTTSANQCKQKVAQYAAEL 165 (273)
Q Consensus 114 ~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~---------------------------~~-~~~~~~~~~~~~~a~~~~~~ 165 (273)
.+..++.+++.+++++.|+++|+.+++... .. .......+.+.++|.|..-.
T Consensus 292 ~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~ya 371 (478)
T KOG1129|consen 292 YLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYA 371 (478)
T ss_pred hhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhh
Confidence 566677777777777777777777655422 11 00122346677888888888
Q ss_pred cCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043 166 EQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ 220 (273)
Q Consensus 166 g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~ 220 (273)
++|+-++..|+++.....+. ....+.|+++|.+....||+.-|.++|+-..
T Consensus 372 qQ~D~~L~sf~RAlstat~~----~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL 422 (478)
T KOG1129|consen 372 QQIDLVLPSFQRALSTATQP----GQAADVWYNLGFVAVTIGDFNLAKRCFRLAL 422 (478)
T ss_pred cchhhhHHHHHHHHhhccCc----chhhhhhhccceeEEeccchHHHHHHHHHHh
Confidence 88888888888886443322 1355778888888788888888888888654
No 56
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.89 E-value=2.2e-07 Score=88.75 Aligned_cols=164 Identities=13% Similarity=0.082 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHH
Q 024043 34 DLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAA 112 (273)
Q Consensus 34 ~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a 112 (273)
++..++-.+....+....+.+.+-++..+.++..+ -+.++.++|.+.... ++++|..+++.++++..+.-
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~------ 120 (694)
T PRK15179 50 ELLQQARQVLERHAAVHKPAAALPELLDYVRRYPH---TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSS------ 120 (694)
T ss_pred HHHHHHHHHHHHhhhhcchHhhHHHHHHHHHhccc---cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcH------
Confidence 45555555666666666666666666666554332 356777777777666 78888888888887766543
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhch
Q 024043 113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGV 192 (273)
Q Consensus 113 ~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~ 192 (273)
.+..+++.++...+++++|+..+++++..-.. .+..+..+|.++.++|+|++|+++|++++...++ .
T Consensus 121 ~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~------~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~-------~ 187 (694)
T PRK15179 121 EAFILMLRGVKRQQGIEAGRAEIELYFSGGSS------SAREILLEAKSWDEIGQSEQADACFERLSRQHPE-------F 187 (694)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC------CHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCC-------c
Confidence 36777788888888888888888887766432 2456777888888888888888888888652222 2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 024043 193 KGHLLNAGICQLCKGDVVAITNALERY 219 (273)
Q Consensus 193 ~~~~~~~gl~~l~~gd~~~A~~~~~~~ 219 (273)
...+...|.++-..|+.+.|..+|++.
T Consensus 188 ~~~~~~~a~~l~~~G~~~~A~~~~~~a 214 (694)
T PRK15179 188 ENGYVGWAQSLTRRGALWRARDVLQAG 214 (694)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345666677777778888777777765
No 57
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.87 E-value=5.1e-07 Score=69.75 Aligned_cols=136 Identities=17% Similarity=0.160 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCC
Q 024043 29 YEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGR 107 (273)
Q Consensus 29 ~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~ 107 (273)
-++|...|..+-..+. .+++..+...+.+... ..++..-+..+...++.++... ++++|+..|++++.-. .+
T Consensus 8 ~~~a~~~y~~~~~~~~-~~~~~~~~~~~~~l~~---~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~---~d 80 (145)
T PF09976_consen 8 AEQASALYEQALQALQ-AGDPAKAEAAAEQLAK---DYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA---PD 80 (145)
T ss_pred HHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH---HCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---CC
Confidence 4567788888777664 7888887665555443 4455555666777788887666 9999999999998733 56
Q ss_pred hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 024043 108 LSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEI 178 (273)
Q Consensus 108 ~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~ 178 (273)
+.....+..+++.++...|++++|+..++. .......+..+...|+++...|++++|+..|+++
T Consensus 81 ~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-------~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 81 PELKPLARLRLARILLQQGQYDEALATLQQ-------IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-------ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 667778889999999999999999999855 2233345667889999999999999999999986
No 58
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.84 E-value=7.8e-08 Score=74.32 Aligned_cols=106 Identities=12% Similarity=0.093 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHH
Q 024043 93 SCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSI 172 (273)
Q Consensus 93 ~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~ 172 (273)
.++++|+.+-... +...|.++...|++++|+.+|++++.+-.. ...++..+|.++..+|+|++|+
T Consensus 14 ~~~~~al~~~p~~---------~~~~g~~~~~~g~~~~A~~~~~~al~~~P~------~~~a~~~lg~~~~~~g~~~~A~ 78 (144)
T PRK15359 14 DILKQLLSVDPET---------VYASGYASWQEGDYSRAVIDFSWLVMAQPW------SWRAHIALAGTWMMLKEYTTAI 78 (144)
T ss_pred HHHHHHHHcCHHH---------HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHHHhhHHHHH
Confidence 5677777765432 456789999999999999999999977432 3478999999999999999999
Q ss_pred HHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043 173 EIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ 220 (273)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~ 220 (273)
..|++++...+++ ...++++|.|+...|++.+|..+++...
T Consensus 79 ~~y~~Al~l~p~~-------~~a~~~lg~~l~~~g~~~eAi~~~~~Al 119 (144)
T PRK15359 79 NFYGHALMLDASH-------PEPVYQTGVCLKMMGEPGLAREAFQTAI 119 (144)
T ss_pred HHHHHHHhcCCCC-------cHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999998755544 3467899999999999999999999864
No 59
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.84 E-value=1.5e-08 Score=86.02 Aligned_cols=119 Identities=11% Similarity=0.114 Sum_probs=101.3
Q ss_pred CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhc
Q 024043 87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE 166 (273)
Q Consensus 87 ~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g 166 (273)
+|+-|+.+|++.+.+-...+. .+.|+|.|...-+++|-++..+++|+....+.+ .++++|.++|.+.+..|
T Consensus 339 ~PE~AlryYRRiLqmG~~spe------Lf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~---~aaDvWYNlg~vaV~iG 409 (478)
T KOG1129|consen 339 NPEMALRYYRRILQMGAQSPE------LFCNIGLCCLYAQQIDLVLPSFQRALSTATQPG---QAADVWYNLGFVAVTIG 409 (478)
T ss_pred ChHHHHHHHHHHHHhcCCChH------HHhhHHHHHHhhcchhhhHHHHHHHHhhccCcc---hhhhhhhccceeEEecc
Confidence 789999999999887665543 889999999999999999999999999987665 66799999999999999
Q ss_pred CHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 024043 167 QYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQD 221 (273)
Q Consensus 167 ~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~ 221 (273)
++.-|..+|+-++.... ...+.+.+++..-...||+.+|+..++...+
T Consensus 410 D~nlA~rcfrlaL~~d~-------~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 410 DFNLAKRCFRLALTSDA-------QHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred chHHHHHHHHHHhccCc-------chHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 99999999998864322 3456788999888899999999998887653
No 60
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.82 E-value=2.7e-07 Score=75.19 Aligned_cols=117 Identities=9% Similarity=0.138 Sum_probs=96.7
Q ss_pred CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHH-HHh
Q 024043 87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYA-AEL 165 (273)
Q Consensus 87 ~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~-~~~ 165 (273)
++++++..+++++....... ..|..+|.+|...|++++|+..|++|+.+.... ..++..+|.++ ...
T Consensus 54 ~~~~~i~~l~~~L~~~P~~~------~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~------~~~~~~lA~aL~~~~ 121 (198)
T PRK10370 54 TPEAQLQALQDKIRANPQNS------EQWALLGEYYLWRNDYDNALLAYRQALQLRGEN------AELYAALATVLYYQA 121 (198)
T ss_pred hHHHHHHHHHHHHHHCCCCH------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhc
Confidence 77889999999988765543 489999999999999999999999999987543 46788899875 677
Q ss_pred cC--HHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 024043 166 EQ--YHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDI 222 (273)
Q Consensus 166 g~--y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~l 222 (273)
|+ +++|.+.+++++...+++. ..++.+|.++...||+.+|..+|++..++
T Consensus 122 g~~~~~~A~~~l~~al~~dP~~~-------~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 122 GQHMTPQTREMIDKALALDANEV-------TALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred CCCCcHHHHHHHHHHHHhCCCCh-------hHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 77 5999999999987666553 36778899999999999999999987543
No 61
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.81 E-value=6.9e-07 Score=71.07 Aligned_cols=95 Identities=12% Similarity=0.113 Sum_probs=67.6
Q ss_pred CChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043 106 GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN 185 (273)
Q Consensus 106 g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~ 185 (273)
......+.++.++|..+...|++++|+.+|++|+.+..... ....++..+|.++..+|+|++|+..|++++...+..
T Consensus 29 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 105 (172)
T PRK02603 29 NKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPN---DRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ 105 (172)
T ss_pred ccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc---hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 34556677888888888888999999999998888754322 234678888999999999999999988887654433
Q ss_pred chhhhchhhHHHHHHHHHHhcCCHH
Q 024043 186 NLLKYGVKGHLLNAGICQLCKGDVV 210 (273)
Q Consensus 186 ~~~~~~~~~~~~~~gl~~l~~gd~~ 210 (273)
. ..+..+|.++...|+..
T Consensus 106 ~-------~~~~~lg~~~~~~g~~~ 123 (172)
T PRK02603 106 P-------SALNNIAVIYHKRGEKA 123 (172)
T ss_pred H-------HHHHHHHHHHHHcCChH
Confidence 1 23445566666655543
No 62
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.80 E-value=4.6e-07 Score=71.79 Aligned_cols=118 Identities=9% Similarity=-0.037 Sum_probs=81.9
Q ss_pred cCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhc
Q 024043 105 IGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLN 184 (273)
Q Consensus 105 ~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~ 184 (273)
.......+.++..+|.++...|++++|+.+|++|+.+... +.....++.++|.++...|++++|+.+|++++...+.
T Consensus 28 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~---~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~ 104 (168)
T CHL00033 28 TTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID---PYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF 104 (168)
T ss_pred CCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc---chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 3445567889999999999999999999999999998542 2233468999999999999999999999999755333
Q ss_pred cchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 024043 185 NNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDIAAS 225 (273)
Q Consensus 185 ~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~ll~a 225 (273)
...........+..+|..+...|++..|...+++...+.+.
T Consensus 105 ~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 145 (168)
T CHL00033 105 LPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQ 145 (168)
T ss_pred cHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 22111112222333333334778887777776665444433
No 63
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.80 E-value=1.6e-06 Score=76.76 Aligned_cols=110 Identities=15% Similarity=0.102 Sum_probs=83.4
Q ss_pred CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhc
Q 024043 87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE 166 (273)
Q Consensus 87 ~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g 166 (273)
++++|.+.|++|+. +-.....++.++|..++.+|+.++|+++|-+--.+.. ..++++.+++.+|..+.
T Consensus 505 d~dka~~~ykeal~------ndasc~ealfniglt~e~~~~ldeald~f~klh~il~------nn~evl~qianiye~le 572 (840)
T KOG2003|consen 505 DLDKAAEFYKEALN------NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILL------NNAEVLVQIANIYELLE 572 (840)
T ss_pred cHHHHHHHHHHHHc------CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHhh
Confidence 66777777777653 3445667899999999999999999999988776664 34688999999999999
Q ss_pred CHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHH
Q 024043 167 QYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNA 215 (273)
Q Consensus 167 ~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~ 215 (273)
++.+|++.|.++...-+.++. .+-+++..|-..||..+|-+|
T Consensus 573 d~aqaie~~~q~~slip~dp~-------ilskl~dlydqegdksqafq~ 614 (840)
T KOG2003|consen 573 DPAQAIELLMQANSLIPNDPA-------ILSKLADLYDQEGDKSQAFQC 614 (840)
T ss_pred CHHHHHHHHHHhcccCCCCHH-------HHHHHHHHhhcccchhhhhhh
Confidence 999999999988654455432 455667777777777666554
No 64
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.78 E-value=4.7e-07 Score=69.92 Aligned_cols=99 Identities=11% Similarity=0.058 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhh
Q 024043 110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLK 189 (273)
Q Consensus 110 ~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~ 189 (273)
..-..+..+|..+...|++++|...|+-.+.+- +.....+.++|.++..+|+|.+|+..|.+++...++++
T Consensus 33 ~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D------p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp--- 103 (157)
T PRK15363 33 QPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD------AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAP--- 103 (157)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc---
Confidence 334456677777777899999999998877664 23357789999999999999999999999987777664
Q ss_pred hchhhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 024043 190 YGVKGHLLNAGICQLCKGDVVAITNALERYQD 221 (273)
Q Consensus 190 ~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~ 221 (273)
..++++|.|++..|+.+.|+.+|+....
T Consensus 104 ----~~~~~ag~c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 104 ----QAPWAAAECYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred ----hHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3568899999999999999999998643
No 65
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.77 E-value=4e-07 Score=72.12 Aligned_cols=113 Identities=13% Similarity=0.096 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCC-
Q 024043 30 EDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGR- 107 (273)
Q Consensus 30 ~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~- 107 (273)
+..+..+...|.++...|++++|...|.+++.+.. ++...+.++.++|.++... ++++|+.+|++|+.+.+..+.
T Consensus 32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~---~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~ 108 (168)
T CHL00033 32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI---DPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQA 108 (168)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc---cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHH
Confidence 34455666667777778888888888888877632 3334455777788888766 888888888888877544332
Q ss_pred hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 024043 108 LSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE 145 (273)
Q Consensus 108 ~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~ 145 (273)
....+.++.++|..+...|++++|+..+.+|+.+++..
T Consensus 109 ~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a 146 (168)
T CHL00033 109 LNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQA 146 (168)
T ss_pred HHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence 22234444444444447777777777777777777654
No 66
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.75 E-value=5.3e-07 Score=87.99 Aligned_cols=167 Identities=13% Similarity=0.046 Sum_probs=99.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHH
Q 024043 39 AANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKE 117 (273)
Q Consensus 39 a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~ 117 (273)
++.+ ...|++++|+..|+++...... .+.. +..+ ++.+|... ++++|+.+|++++..-. .+....-.....
T Consensus 244 l~~L-l~~g~~~eA~~~~~~ll~~~~~--~P~~-a~~~--la~~yl~~g~~e~A~~~l~~~l~~~p--~~~~~~~~~~~~ 315 (765)
T PRK10049 244 LGAL-LARDRYKDVISEYQRLKAEGQI--IPPW-AQRW--VASAYLKLHQPEKAQSILTELFYHPE--TIADLSDEELAD 315 (765)
T ss_pred HHHH-HHhhhHHHHHHHHHHhhccCCC--CCHH-HHHH--HHHHHHhcCCcHHHHHHHHHHhhcCC--CCCCCChHHHHH
Confidence 3434 3557788888888776544211 1111 1222 35566555 78888888887766432 221111234456
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhc--------cCCcc-cHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchh
Q 024043 118 IAELYESEHNIEQTIVFFEKAADMFQN--------EEVTT-SANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLL 188 (273)
Q Consensus 118 lg~~~~~~g~~~~A~~~y~~Al~~~~~--------~~~~~-~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~ 188 (273)
++.++...|++++|+..++++.+..+. ...+. .....+..+|.++...|++++|++.+++++...+++.
T Consensus 316 L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~-- 393 (765)
T PRK10049 316 LFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQ-- 393 (765)
T ss_pred HHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--
Confidence 666667777777777777777776531 11122 2234566777777777777777777777766555442
Q ss_pred hhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043 189 KYGVKGHLLNAGICQLCKGDVVAITNALERYQ 220 (273)
Q Consensus 189 ~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~ 220 (273)
..++.++.++...|++.+|...+++..
T Consensus 394 -----~l~~~lA~l~~~~g~~~~A~~~l~~al 420 (765)
T PRK10049 394 -----GLRIDYASVLQARGWPRAAENELKKAE 420 (765)
T ss_pred -----HHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 245566777777777777777777644
No 67
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.74 E-value=1.4e-06 Score=85.15 Aligned_cols=197 Identities=8% Similarity=-0.008 Sum_probs=142.7
Q ss_pred CCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHH
Q 024043 27 SKYEDAADLFDKA---------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNE 90 (273)
Q Consensus 27 ~~~~~A~~~~~~a---------------~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~e 90 (273)
+++++|...|.++ +.+|...|++++|+..|.++..... .+..........++.++.+. ++++
T Consensus 251 g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p--~~~~~~~~~~~~L~~a~~~~g~~~e 328 (765)
T PRK10049 251 DRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPE--TIADLSDEELADLFYSLLESENYPG 328 (765)
T ss_pred hhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCC--CCCCCChHHHHHHHHHHHhcccHHH
Confidence 6778888877754 4578889999999999998765321 11111124455667677666 9999
Q ss_pred HHHHHHHHHHHHHhcCChh---------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHH
Q 024043 91 AISCLEQAVNMFCDIGRLS---------MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQY 161 (273)
Q Consensus 91 A~~~~~~Al~~~~~~g~~~---------~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~ 161 (273)
|+..++++.......-... ....++..+|.++...|++++|+..+++++...+.. ...+..+|.+
T Consensus 329 A~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n------~~l~~~lA~l 402 (765)
T PRK10049 329 ALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGN------QGLRIDYASV 402 (765)
T ss_pred HHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHH
Confidence 9999998876533322222 234678899999999999999999999999886433 4689999999
Q ss_pred HHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCHhHHHHHHHh
Q 024043 162 AAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDIAASMDEEDIAKFTDVVKE 240 (273)
Q Consensus 162 ~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~ll~a~~~~d~~~~~~~~~~ 240 (273)
+...|++++|+..+++++...+++. ..++..+.+.+..|++.+|...+++..+.. -++..+..+.....-
T Consensus 403 ~~~~g~~~~A~~~l~~al~l~Pd~~-------~l~~~~a~~al~~~~~~~A~~~~~~ll~~~--Pd~~~~~~~~~~~~~ 472 (765)
T PRK10049 403 LQARGWPRAAENELKKAEVLEPRNI-------NLEVEQAWTALDLQEWRQMDVLTDDVVARE--PQDPGVQRLARARDV 472 (765)
T ss_pred HHhcCCHHHHHHHHHHHHhhCCCCh-------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHh
Confidence 9999999999999999987666653 244566778899999999999888863211 133334455555543
No 68
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.74 E-value=3.4e-07 Score=78.57 Aligned_cols=150 Identities=15% Similarity=0.173 Sum_probs=94.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHH
Q 024043 36 FDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARY 114 (273)
Q Consensus 36 ~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~ 114 (273)
+..+..++...++++++...+.++.. ..........+...|.++.+. ++++|+++|++|+++.+...+ +
T Consensus 113 l~~~l~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~------~ 182 (280)
T PF13429_consen 113 LLSALQLYYRLGDYDEAEELLEKLEE----LPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPD------A 182 (280)
T ss_dssp -----H-HHHTT-HHHHHHHHHHHHH-----T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HH------H
T ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHh----ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH------H
Confidence 34456667778888888888888663 222234466777888888766 888888888888888765433 6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhh
Q 024043 115 YKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKG 194 (273)
Q Consensus 115 l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~ 194 (273)
+..++.++...|+++++.+.+.......+.+. ..+..+|.++..+|++++|+.+|+++....++++........
T Consensus 183 ~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~------~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~ 256 (280)
T PF13429_consen 183 RNALAWLLIDMGDYDEAREALKRLLKAAPDDP------DLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYAD 256 (280)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSC------CHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHHCcCHH------HHHHHHHHHhcccccccccccccccccccccccccccccccc
Confidence 67778888888888886666666555543322 235677888888888888888888888877777655444555
Q ss_pred HHHHHHH
Q 024043 195 HLLNAGI 201 (273)
Q Consensus 195 ~~~~~gl 201 (273)
++...|.
T Consensus 257 ~l~~~g~ 263 (280)
T PF13429_consen 257 ALEQAGR 263 (280)
T ss_dssp HHT----
T ss_pred ccccccc
Confidence 5555443
No 69
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.73 E-value=2.6e-07 Score=88.25 Aligned_cols=158 Identities=13% Similarity=0.065 Sum_probs=125.7
Q ss_pred hhHHHHHHHHHHhhccccCC-------------CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHH
Q 024043 6 ARAEEFEKKAEKKLNGWGLF-------------GSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEA 72 (273)
Q Consensus 6 ~~a~~l~~~Aek~~k~~~~~-------------~~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~a 72 (273)
+-.++++.+++..+..-+.. --+|..=.+.+..+|.+....|++++|...++.++++... -
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd------~ 119 (694)
T PRK15179 46 EAGRELLQQARQVLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD------S 119 (694)
T ss_pred hHHHHHHHHHHHHHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC------c
Confidence 34489999999988721111 1244444566667899999999999999999999988632 2
Q ss_pred HHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccH
Q 024043 73 AQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSA 151 (273)
Q Consensus 73 a~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~ 151 (273)
..+..+.+.+.++. ++++|+..+++++..-... +..+..+|.++...|+|++|+.+|++++. ... ..
T Consensus 120 ~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~------~~~~~~~a~~l~~~g~~~~A~~~y~~~~~--~~p----~~ 187 (694)
T PRK15179 120 SEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSS------AREILLEAKSWDEIGQSEQADACFERLSR--QHP----EF 187 (694)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCC------HHHHHHHHHHHHHhcchHHHHHHHHHHHh--cCC----Cc
Confidence 34566678888776 9999999999999876554 45899999999999999999999999998 221 23
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 024043 152 NQCKQKVAQYAAELEQYHKSIEIYEEIARQ 181 (273)
Q Consensus 152 ~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~ 181 (273)
..++..+|.++...|+.++|...|++++..
T Consensus 188 ~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 188 ENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 478999999999999999999999999754
No 70
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=2.3e-06 Score=76.93 Aligned_cols=180 Identities=13% Similarity=0.081 Sum_probs=128.7
Q ss_pred CCHHHHHHHHHHH-------------HHHHHHcCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHhcc-CHHHH
Q 024043 27 SKYEDAADLFDKA-------------ANSFKLAKSWDKAGATYVKLANCHLKLE-SKHEAAQAYVDAAHCYKKT-SSNEA 91 (273)
Q Consensus 27 ~~~~~A~~~~~~a-------------~~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~aa~~~~~~~~~~~~~-~~~eA 91 (273)
.+++.|...|..+ +..|-..|.+.+.+.....+.+.-.... +..-.+.++..+|+.|.+. +++.+
T Consensus 238 k~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~a 317 (539)
T KOG0548|consen 238 KDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGA 317 (539)
T ss_pred hhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHH
Confidence 3555555555554 4455556666666666666555544332 3344677788888899877 99999
Q ss_pred HHHHHHHHHHHHhc---------------------CChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCccc
Q 024043 92 ISCLEQAVNMFCDI---------------------GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTS 150 (273)
Q Consensus 92 ~~~~~~Al~~~~~~---------------------g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~ 150 (273)
+.+|++++.-++.- -++.. +.-...-|..+...|+|..|+.+|.+|+..-+.
T Consensus 318 i~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~------ 390 (539)
T KOG0548|consen 318 IKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPE------ 390 (539)
T ss_pred HHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCc------
Confidence 99999998877651 11111 334445688888889999999999998877532
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043 151 ANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ 220 (273)
Q Consensus 151 ~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~ 220 (273)
-+..+.+.|.+|.++|.+..|+...+.++...+. ....+++-|.|+..+.++..|.++|++..
T Consensus 391 Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~-------~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 391 DARLYSNRAACYLKLGEYPEALKDAKKCIELDPN-------FIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2467999999999999999999999988754222 22345677888888889999999888765
No 71
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.67 E-value=1.1e-06 Score=77.78 Aligned_cols=163 Identities=12% Similarity=-0.055 Sum_probs=93.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHH
Q 024043 39 AANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKE 117 (273)
Q Consensus 39 a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~ 117 (273)
-+.++...|++++|...++++++... +... ++.. +..+... ++..+.....+++.. ...........+..
T Consensus 49 ~a~~~~~~g~~~~A~~~~~~~l~~~P---~~~~---a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~ 119 (355)
T cd05804 49 EALSAWIAGDLPKALALLEQLLDDYP---RDLL---ALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGM 119 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCC---CcHH---HHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHH
Confidence 35566677888888888888776532 1111 1111 1122111 222222223333332 23344445566667
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHH
Q 024043 118 IAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLL 197 (273)
Q Consensus 118 lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (273)
+|.++...|++++|...+++++++.+.. ..++..+|.++...|++++|+.++++++.....++. .....+.
T Consensus 120 ~a~~~~~~G~~~~A~~~~~~al~~~p~~------~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~---~~~~~~~ 190 (355)
T cd05804 120 LAFGLEEAGQYDRAEEAARRALELNPDD------AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSM---LRGHNWW 190 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCC------cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcc---hhHHHHH
Confidence 7777777788888888888887775433 345677777888888888888888777643322110 1112334
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 024043 198 NAGICQLCKGDVVAITNALERY 219 (273)
Q Consensus 198 ~~gl~~l~~gd~~~A~~~~~~~ 219 (273)
.++.+++..|++++|...+++.
T Consensus 191 ~la~~~~~~G~~~~A~~~~~~~ 212 (355)
T cd05804 191 HLALFYLERGDYEAALAIYDTH 212 (355)
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 5667777788887777777764
No 72
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.67 E-value=4.7e-06 Score=64.36 Aligned_cols=134 Identities=16% Similarity=0.132 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccH
Q 024043 72 AAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSA 151 (273)
Q Consensus 72 aa~~~~~~~~~~~~~~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~ 151 (273)
+...|..+-..+...++..+...+++-+ ...++..-...+...+|.++...|++++|...|+++++-. .++...
T Consensus 11 a~~~y~~~~~~~~~~~~~~~~~~~~~l~---~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~---~d~~l~ 84 (145)
T PF09976_consen 11 ASALYEQALQALQAGDPAKAEAAAEQLA---KDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA---PDPELK 84 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHH---HHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---CCHHHH
Confidence 3444444444444446666555444433 3445555677888899999999999999999999999854 233445
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 024043 152 NQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERY 219 (273)
Q Consensus 152 ~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~ 219 (273)
..+..++|.++...|+|++|+..++.+. +. .+ ........|.+++..||.++|+.+|+..
T Consensus 85 ~~a~l~LA~~~~~~~~~d~Al~~L~~~~----~~---~~-~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 85 PLARLRLARILLQQGQYDEALATLQQIP----DE---AF-KALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhcc----Cc---ch-HHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 6778899999999999999999997642 11 11 1224455799999999999999999863
No 73
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.65 E-value=1.9e-06 Score=78.08 Aligned_cols=196 Identities=15% Similarity=0.143 Sum_probs=124.5
Q ss_pred chHhhHHHHHHHHHHhhc-cccCC------CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 024043 3 DQIARAEEFEKKAEKKLN-GWGLF------GSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQA 75 (273)
Q Consensus 3 ~~~~~a~~l~~~Aek~~k-~~~~~------~~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~ 75 (273)
|+.+++..||+++. +. ....| .|..-+||. .+|.....-++=..|+.++++++++-... -.+
T Consensus 287 dPf~eG~~lm~nG~--L~~A~LafEAAVkqdP~haeAW~---~LG~~qaENE~E~~ai~AL~rcl~LdP~N------lea 355 (579)
T KOG1125|consen 287 DPFKEGCNLMKNGD--LSEAALAFEAAVKQDPQHAEAWQ---KLGITQAENENEQNAISALRRCLELDPTN------LEA 355 (579)
T ss_pred ChHHHHHHHHhcCC--chHHHHHHHHHHhhChHHHHHHH---HhhhHhhhccchHHHHHHHHHHHhcCCcc------HHH
Confidence 45666666666655 32 11111 155455554 35777777778888999999988774221 123
Q ss_pred HHHHHHHHhcc-CHHHHHH----------------------------------HHHHHHHHHHhcCCh---hHHHHHHHH
Q 024043 76 YVDAAHCYKKT-SSNEAIS----------------------------------CLEQAVNMFCDIGRL---SMAARYYKE 117 (273)
Q Consensus 76 ~~~~~~~~~~~-~~~eA~~----------------------------------~~~~Al~~~~~~g~~---~~~a~~l~~ 117 (273)
+..++.+|... .-.+|+. ++....++|.+.... ..-+.+...
T Consensus 356 LmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~ 435 (579)
T KOG1125|consen 356 LMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSG 435 (579)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhh
Confidence 33333333222 1122222 233333333222111 123567888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHH
Q 024043 118 IAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLL 197 (273)
Q Consensus 118 lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (273)
||.+|...|+|++|+.||+.|+..-..+ ...|+++|-++....+..+||..|++++...++-. ...+
T Consensus 436 LGVLy~ls~efdraiDcf~~AL~v~Pnd------~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yV-------R~Ry 502 (579)
T KOG1125|consen 436 LGVLYNLSGEFDRAVDCFEAALQVKPND------YLLWNRLGATLANGNRSEEAISAYNRALQLQPGYV-------RVRY 502 (579)
T ss_pred hHHHHhcchHHHHHHHHHHHHHhcCCch------HHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCee-------eeeh
Confidence 9999999999999999999999774432 46789999999999999999999999986555532 2446
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHH
Q 024043 198 NAGICQLCKGDVVAITNALERYQDI 222 (273)
Q Consensus 198 ~~gl~~l~~gd~~~A~~~~~~~~~l 222 (273)
++|+++.-.|.+.+|..+|-....+
T Consensus 503 NlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 503 NLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 7888888888888887777665433
No 74
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.64 E-value=1.1e-05 Score=68.73 Aligned_cols=166 Identities=18% Similarity=0.228 Sum_probs=110.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHH---------------------------
Q 024043 40 ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEA--------------------------- 91 (273)
Q Consensus 40 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA--------------------------- 91 (273)
|.-|-...+.++|++.|...+.. ..+...+..-+|++|+.. ..+.|
T Consensus 42 GlNfLLs~Q~dKAvdlF~e~l~~------d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~ 115 (389)
T COG2956 42 GLNFLLSNQPDKAVDLFLEMLQE------DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGR 115 (389)
T ss_pred HHHHHhhcCcchHHHHHHHHHhc------CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Confidence 44555667888898888877652 123334444555555433 33333
Q ss_pred ----HHHHHHHHHHHHhcCC-hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhc
Q 024043 92 ----ISCLEQAVNMFCDIGR-LSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE 166 (273)
Q Consensus 92 ----~~~~~~Al~~~~~~g~-~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g 166 (273)
.-.|.+|-++|...-+ +..+-.++..+-.+|....+.++|++..++-+.+-.+. .....+..+..+|..+....
T Consensus 116 Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~-~~~eIAqfyCELAq~~~~~~ 194 (389)
T COG2956 116 DYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQT-YRVEIAQFYCELAQQALASS 194 (389)
T ss_pred HHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcc-chhHHHHHHHHHHHHHhhhh
Confidence 3345566666665555 55566677777788887777777777766655543332 23566788888888888888
Q ss_pred CHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 024043 167 QYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERY 219 (273)
Q Consensus 167 ~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~ 219 (273)
+.++|++.+.+++...+.+. + .-..+|.+.+..||+.+|.+.|+.-
T Consensus 195 ~~d~A~~~l~kAlqa~~~cv------R-Asi~lG~v~~~~g~y~~AV~~~e~v 240 (389)
T COG2956 195 DVDRARELLKKALQADKKCV------R-ASIILGRVELAKGDYQKAVEALERV 240 (389)
T ss_pred hHHHHHHHHHHHHhhCccce------e-hhhhhhHHHHhccchHHHHHHHHHH
Confidence 99999999999876554442 1 2234688899999999999988874
No 75
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.63 E-value=9.8e-07 Score=71.89 Aligned_cols=121 Identities=14% Similarity=0.144 Sum_probs=97.3
Q ss_pred cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH-H
Q 024043 46 AKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELY-E 123 (273)
Q Consensus 46 ~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~-~ 123 (273)
.++.++++..+.+++..... -+..+..+|.+|... ++++|+.+|++|+.+..+.. .++..+|.++ .
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~------~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~------~~~~~lA~aL~~ 119 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ------NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENA------ELYAALATVLYY 119 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHH
Confidence 45667777777777766422 245788899999877 99999999999999886554 4888999875 5
Q ss_pred hcCC--HHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhc
Q 024043 124 SEHN--IEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLN 184 (273)
Q Consensus 124 ~~g~--~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~ 184 (273)
..|+ +++|...+++|+...... ..++..+|..+...|+|++|+.+|++++...+.
T Consensus 120 ~~g~~~~~~A~~~l~~al~~dP~~------~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 120 QAGQHMTPQTREMIDKALALDANE------VTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred hcCCCCcHHHHHHHHHHHHhCCCC------hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 6677 699999999999986543 367899999999999999999999999765443
No 76
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.63 E-value=1e-06 Score=78.52 Aligned_cols=164 Identities=15% Similarity=0.202 Sum_probs=123.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 024043 40 ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEI 118 (273)
Q Consensus 40 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~l 118 (273)
|.++-..+++++|+.-|+++..+- ++-+-.|.+++-+..+. .++++...|+.+..-|+.. ..++.-.
T Consensus 401 gQm~flL~q~e~A~aDF~Kai~L~------pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~------~Evy~~f 468 (606)
T KOG0547|consen 401 GQMRFLLQQYEEAIADFQKAISLD------PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNC------PEVYNLF 468 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcC------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC------chHHHHH
Confidence 666777788999999999998874 23355666666655555 9999999999998876654 5699999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhccCC-cccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHH
Q 024043 119 AELYESEHNIEQTIVFFEKAADMFQNEEV-TTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLL 197 (273)
Q Consensus 119 g~~~~~~g~~~~A~~~y~~Al~~~~~~~~-~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (273)
|+++..++++++|+++|.+|+++-+...- ..+++-...+.-.++...+++.+|+.++++++...+.+.. .+.
T Consensus 469 AeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~-------A~~ 541 (606)
T KOG0547|consen 469 AEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQ-------AYE 541 (606)
T ss_pred HHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHH-------HHH
Confidence 99999999999999999999999776433 2343333333334455678999999999999865444421 345
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHH
Q 024043 198 NAGICQLCKGDVVAITNALERYQDI 222 (273)
Q Consensus 198 ~~gl~~l~~gd~~~A~~~~~~~~~l 222 (273)
.++-+-+.+|+.++|.+.|++...|
T Consensus 542 tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 542 TLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 5677778999999999999986533
No 77
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.61 E-value=3.3e-06 Score=67.14 Aligned_cols=105 Identities=11% Similarity=0.202 Sum_probs=79.9
Q ss_pred HcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 024043 65 KLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQ 143 (273)
Q Consensus 65 ~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~ 143 (273)
........+..+...|.++... ++++|+.+|++++.+.... ...+.++.++|.++...|++++|+.+|.+|+.+..
T Consensus 27 ~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 103 (172)
T PRK02603 27 PINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDP---NDRSYILYNMGIIYASNGEHDKALEYYHQALELNP 103 (172)
T ss_pred ccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc---chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 3445677788899999999776 9999999999999876532 23467899999999999999999999999999864
Q ss_pred ccCCcccHHHHHHHHHHHHHHhcC-------HHHHHHHHHHH
Q 024043 144 NEEVTTSANQCKQKVAQYAAELEQ-------YHKSIEIYEEI 178 (273)
Q Consensus 144 ~~~~~~~~~~~~~~~a~~~~~~g~-------y~~A~~~~~~~ 178 (273)
.. ...+..+|.++...|+ +++|+..|+++
T Consensus 104 ~~------~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A 139 (172)
T PRK02603 104 KQ------PSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKA 139 (172)
T ss_pred cc------HHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHH
Confidence 32 3456667777776655 44454444444
No 78
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.61 E-value=2.1e-05 Score=66.17 Aligned_cols=177 Identities=13% Similarity=0.065 Sum_probs=133.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChh
Q 024043 31 DAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLS 109 (273)
Q Consensus 31 ~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~ 109 (273)
.+...|..+ ..+...|+|++|++.|++....+. ....+..+...+|.+|.+. ++++|+..+++.+..++...+
T Consensus 31 ~~~~~Y~~A-~~~~~~g~y~~Ai~~f~~l~~~yP---~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~-- 104 (243)
T PRK10866 31 PPSEIYATA-QQKLQDGNWKQAITQLEALDNRYP---FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN-- 104 (243)
T ss_pred CHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc--
Confidence 455677764 444558999999999999988764 2345556678899999888 999999999999999886654
Q ss_pred HHHHHHHHHHHHHHhcC---------------C---HHHHHHHHHHHHHHHhccCCcccH-----------HHHHHHHHH
Q 024043 110 MAARYYKEIAELYESEH---------------N---IEQTIVFFEKAADMFQNEEVTTSA-----------NQCKQKVAQ 160 (273)
Q Consensus 110 ~~a~~l~~lg~~~~~~g---------------~---~~~A~~~y~~Al~~~~~~~~~~~~-----------~~~~~~~a~ 160 (273)
...++..+|.++...+ + ..+|+..+++-++.|+.+.-...+ +.--..+|.
T Consensus 105 -~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~ 183 (243)
T PRK10866 105 -IDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAE 183 (243)
T ss_pred -hHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667888887753332 2 346888999999988865422221 122235667
Q ss_pred HHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHH
Q 024043 161 YAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALER 218 (273)
Q Consensus 161 ~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~ 218 (273)
.|.+.|.|.-|+.-++.++...++.+ ...+.+..++.++...|..+.|......
T Consensus 184 ~Y~~~~~y~AA~~r~~~v~~~Yp~t~----~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 184 YYTKRGAYVAVVNRVEQMLRDYPDTQ----ATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHcCchHHHHHHHHHHHHHCCCCc----hHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 78999999999999999998887764 2556788889999999999888877654
No 79
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.57 E-value=1.5e-06 Score=64.03 Aligned_cols=106 Identities=16% Similarity=0.180 Sum_probs=84.5
Q ss_pred HHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHH
Q 024043 74 QAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSAN 152 (273)
Q Consensus 74 ~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~ 152 (273)
..+...|..+... ++++|++.|.+++..+. +......++..+|.++...|++++|+.+|++++..+.... ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~ 76 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYP---KSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSP---KAP 76 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC---CccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCC---ccc
Confidence 4566777777666 99999999999987643 2233456788899999999999999999999998875332 224
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043 153 QCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN 185 (273)
Q Consensus 153 ~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~ 185 (273)
.++..+|.++..+|++++|+.+|++++...+++
T Consensus 77 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 77 DALLKLGMSLQELGDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCC
Confidence 668999999999999999999999998766654
No 80
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.56 E-value=4.9e-07 Score=60.35 Aligned_cols=64 Identities=20% Similarity=0.367 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHH
Q 024043 112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE-QYHKSIEIYEEIARQ 181 (273)
Q Consensus 112 a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g-~y~~A~~~~~~~~~~ 181 (273)
|.++..+|.++...|++++|+.+|.+|+++.. ....++.++|.++..+| ++++|++.+++++..
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p------~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDP------NNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHST------THHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC------CCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 56899999999999999999999999999853 33578999999999999 799999999998753
No 81
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.55 E-value=2.2e-06 Score=63.11 Aligned_cols=101 Identities=14% Similarity=0.151 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhc
Q 024043 112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYG 191 (273)
Q Consensus 112 a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~ 191 (273)
++.+..+|..+...|++++|+..|.+++..+... .....++..+|.++...|+|++|+.+|++++...++.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~---- 74 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKS---TYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPK---- 74 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc---cccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCc----
Confidence 3578889999999999999999999999876432 223467889999999999999999999999866554421
Q ss_pred hhhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 024043 192 VKGHLLNAGICQLCKGDVVAITNALERY 219 (273)
Q Consensus 192 ~~~~~~~~gl~~l~~gd~~~A~~~~~~~ 219 (273)
....++.+|.++...|+...|...+++.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 102 (119)
T TIGR02795 75 APDALLKLGMSLQELGDKEKAKATLQQV 102 (119)
T ss_pred ccHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 2345678899999999999999888876
No 82
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.54 E-value=1.3e-06 Score=77.41 Aligned_cols=145 Identities=12% Similarity=0.102 Sum_probs=107.6
Q ss_pred CCCCHHHHHHHHHHHHH-------------HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHH
Q 024043 25 FGSKYEDAADLFDKAAN-------------SFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNE 90 (273)
Q Consensus 25 ~~~~~~~A~~~~~~a~~-------------~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~e 90 (273)
+.+++++|...+.++.. .+...|++..+.....++... ..+........+...|.++... ++++
T Consensus 55 ~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~ 132 (355)
T cd05804 55 IAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDR 132 (355)
T ss_pred HcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHH
Confidence 34899999999887642 123334444444444444433 2233444556666778888776 9999
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHH
Q 024043 91 AISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHK 170 (273)
Q Consensus 91 A~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~ 170 (273)
|+..+++++++.+.. +.++..+|.++...|++++|+.+++++++..+.. +.....++..+|.++...|++++
T Consensus 133 A~~~~~~al~~~p~~------~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~--~~~~~~~~~~la~~~~~~G~~~~ 204 (355)
T cd05804 133 AEEAARRALELNPDD------AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCS--SMLRGHNWWHLALFYLERGDYEA 204 (355)
T ss_pred HHHHHHHHHhhCCCC------cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCC--cchhHHHHHHHHHHHHHCCCHHH
Confidence 999999999986554 4578899999999999999999999999887652 23334567889999999999999
Q ss_pred HHHHHHHHH
Q 024043 171 SIEIYEEIA 179 (273)
Q Consensus 171 A~~~~~~~~ 179 (273)
|+..|++++
T Consensus 205 A~~~~~~~~ 213 (355)
T cd05804 205 ALAIYDTHI 213 (355)
T ss_pred HHHHHHHHh
Confidence 999999985
No 83
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.54 E-value=9.4e-07 Score=78.54 Aligned_cols=91 Identities=15% Similarity=0.148 Sum_probs=55.6
Q ss_pred HhccCHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHH
Q 024043 83 YKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYA 162 (273)
Q Consensus 83 ~~~~~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~ 162 (273)
+...++++|+++|++|+.+.... +.++.++|.+|..+|++++|+..+++|+.+... ...++..+|.++
T Consensus 13 ~~~~~~~~Ai~~~~~Al~~~P~~------~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~------~~~a~~~lg~~~ 80 (356)
T PLN03088 13 FVDDDFALAVDLYTQAIDLDPNN------AELYADRAQANIKLGNFTEAVADANKAIELDPS------LAKAYLRKGTAC 80 (356)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC------CHHHHHHHHHHH
Confidence 33346666666666666654322 345666667776667777777777777666432 134566667777
Q ss_pred HHhcCHHHHHHHHHHHHHHHhcc
Q 024043 163 AELEQYHKSIEIYEEIARQSLNN 185 (273)
Q Consensus 163 ~~~g~y~~A~~~~~~~~~~~~~~ 185 (273)
..+|+|++|+..|++++...+++
T Consensus 81 ~~lg~~~eA~~~~~~al~l~P~~ 103 (356)
T PLN03088 81 MKLEEYQTAKAALEKGASLAPGD 103 (356)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCC
Confidence 77777777777777666544443
No 84
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.53 E-value=1e-06 Score=66.83 Aligned_cols=101 Identities=13% Similarity=0.057 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccH
Q 024043 73 AQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSA 151 (273)
Q Consensus 73 a~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~ 151 (273)
.......|.++... ++++|++++++++.+.... ...+..+|.++...|++++|+.++++++.+... .
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~------~ 84 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYN------SRYWLGLAACCQMLKEYEEAIDAYALAAALDPD------D 84 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------C
Confidence 45677788888766 9999999999998865432 468899999999999999999999999988533 2
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043 152 NQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN 185 (273)
Q Consensus 152 ~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~ 185 (273)
...+..+|.++...|++++|+..|++++...+++
T Consensus 85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 118 (135)
T TIGR02552 85 PRPYFHAAECLLALGEPESALKALDLAIEICGEN 118 (135)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 4668889999999999999999999997655544
No 85
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.53 E-value=1.2e-06 Score=61.06 Aligned_cols=81 Identities=19% Similarity=0.260 Sum_probs=62.5
Q ss_pred CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhc
Q 024043 87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE 166 (273)
Q Consensus 87 ~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g 166 (273)
++++|+.++++.++.... ++ ....+..+|.++...|+|++|+..+++ ..+-. ....+...+|.++.++|
T Consensus 4 ~y~~Ai~~~~k~~~~~~~--~~--~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~------~~~~~~~l~a~~~~~l~ 72 (84)
T PF12895_consen 4 NYENAIKYYEKLLELDPT--NP--NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP------SNPDIHYLLARCLLKLG 72 (84)
T ss_dssp -HHHHHHHHHHHHHHHCG--TH--HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH------CHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHCCC--Ch--hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC------CCHHHHHHHHHHHHHhC
Confidence 688999999999887764 22 455777899999999999999999988 33332 12455667799999999
Q ss_pred CHHHHHHHHHHH
Q 024043 167 QYHKSIEIYEEI 178 (273)
Q Consensus 167 ~y~~A~~~~~~~ 178 (273)
+|++|+++|+++
T Consensus 73 ~y~eAi~~l~~~ 84 (84)
T PF12895_consen 73 KYEEAIKALEKA 84 (84)
T ss_dssp -HHHHHHHHHHH
T ss_pred CHHHHHHHHhcC
Confidence 999999999874
No 86
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.52 E-value=5.3e-06 Score=64.13 Aligned_cols=97 Identities=12% Similarity=0.088 Sum_probs=78.5
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHH
Q 024043 74 QAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQ 153 (273)
Q Consensus 74 ~~~~~~~~~~~~~~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~ 153 (273)
..|.-+...|...++++|...|+-...+-... +..+.++|.++..+|++.+|+..|.+|+.+-... +.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~------~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~dd------p~ 104 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAWS------FDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDA------PQ 104 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC------ch
Confidence 34444444455559999999999887765433 4589999999999999999999999999886532 35
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 024043 154 CKQKVAQYAAELEQYHKSIEIYEEIARQS 182 (273)
Q Consensus 154 ~~~~~a~~~~~~g~y~~A~~~~~~~~~~~ 182 (273)
.+.+.|.++...|+.+.|.+.|+.++..+
T Consensus 105 ~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 105 APWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 68899999999999999999999998665
No 87
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.52 E-value=6.1e-07 Score=81.23 Aligned_cols=123 Identities=12% Similarity=0.075 Sum_probs=87.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHH
Q 024043 39 AANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKE 117 (273)
Q Consensus 39 a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~ 117 (273)
+|.+|...|+|++|++||+.|+..-.. -...++++|-..-.. +..+||+.|++|+++.+.-= ++..|
T Consensus 436 LGVLy~ls~efdraiDcf~~AL~v~Pn------d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yV------R~RyN 503 (579)
T KOG1125|consen 436 LGVLYNLSGEFDRAVDCFEAALQVKPN------DYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYV------RVRYN 503 (579)
T ss_pred hHHHHhcchHHHHHHHHHHHHHhcCCc------hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCee------eeehh
Confidence 467888888999999999888866321 235778888888777 88899999999988876443 37888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccH----HHHHHHHHHHHHHhcCHHHHHH
Q 024043 118 IAELYESEHNIEQTIVFFEKAADMFQNEEVTTSA----NQCKQKVAQYAAELEQYHKSIE 173 (273)
Q Consensus 118 lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~----~~~~~~~a~~~~~~g~y~~A~~ 173 (273)
||..+..+|.|++|+.+|-.||.+.+........ ..+|..+=.++..+++.+-+.+
T Consensus 504 lgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 504 LGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 8888888899999999999999888774322221 2344444445555555554444
No 88
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.49 E-value=1.8e-06 Score=65.52 Aligned_cols=97 Identities=15% Similarity=0.182 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhc
Q 024043 112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYG 191 (273)
Q Consensus 112 a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~ 191 (273)
......+|..+...|++++|+.++++++.+... ...++..+|.++...|++++|+.+|++++...+.+
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~------ 84 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY------NSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD------ 84 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC------
Confidence 456888999999999999999999999887532 24678999999999999999999999987644332
Q ss_pred hhhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 024043 192 VKGHLLNAGICQLCKGDVVAITNALERYQD 221 (273)
Q Consensus 192 ~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~ 221 (273)
...++.+|.++...|++.+|...++....
T Consensus 85 -~~~~~~la~~~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 85 -PRPYFHAAECLLALGEPESALKALDLAIE 113 (135)
T ss_pred -hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 23567789999999999999998887643
No 89
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.49 E-value=8.1e-07 Score=61.36 Aligned_cols=93 Identities=22% Similarity=0.304 Sum_probs=73.6
Q ss_pred HHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHH
Q 024043 75 AYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQ 153 (273)
Q Consensus 75 ~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~ 153 (273)
++..+|.++... ++++|+..+++++....... .++..+|.++...+++++|+.++++++.+..... .
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~ 69 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNA------DAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA------K 69 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch------h
Confidence 355667776655 88889999888887654332 5788899999998999999999999988764332 5
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH
Q 024043 154 CKQKVAQYAAELEQYHKSIEIYEEIA 179 (273)
Q Consensus 154 ~~~~~a~~~~~~g~y~~A~~~~~~~~ 179 (273)
++..+|.++...|++++|..++.++.
T Consensus 70 ~~~~~~~~~~~~~~~~~a~~~~~~~~ 95 (100)
T cd00189 70 AYYNLGLAYYKLGKYEEALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 68889999999999999999988875
No 90
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.46 E-value=6.1e-05 Score=61.58 Aligned_cols=171 Identities=18% Similarity=0.169 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhH
Q 024043 32 AADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSM 110 (273)
Q Consensus 32 A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~ 110 (273)
+-.+|.. |..+...|+|.+|+..|.+....+... ..+..+...+|.++... ++++|+..+++-+..|+....
T Consensus 5 ~~~lY~~-a~~~~~~g~y~~Ai~~f~~l~~~~P~s---~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~--- 77 (203)
T PF13525_consen 5 AEALYQK-ALEALQQGDYEEAIKLFEKLIDRYPNS---PYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK--- 77 (203)
T ss_dssp HHHHHHH-HHHHHHCT-HHHHHHHHHHHHHH-TTS---TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT---
T ss_pred HHHHHHH-HHHHHHCCCHHHHHHHHHHHHHHCCCC---hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc---
Confidence 3445555 566666889999999999888776433 33455667888888777 999999999999998876543
Q ss_pred HHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHHHhccCCcccH-----------HHHHHHHHHHHHHhcCH
Q 024043 111 AARYYKEIAELYESE-----------HNIEQTIVFFEKAADMFQNEEVTTSA-----------NQCKQKVAQYAAELEQY 168 (273)
Q Consensus 111 ~a~~l~~lg~~~~~~-----------g~~~~A~~~y~~Al~~~~~~~~~~~~-----------~~~~~~~a~~~~~~g~y 168 (273)
...++..+|.++... +...+|+..++.-+..|+.+.-...+ +.--..+|..|.+.|.|
T Consensus 78 ~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y 157 (203)
T PF13525_consen 78 ADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKY 157 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-H
T ss_pred hhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccH
Confidence 456677777765443 33568899999999888876532222 12234456788899999
Q ss_pred HHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHH
Q 024043 169 HKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAIT 213 (273)
Q Consensus 169 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~ 213 (273)
.-|+..|+.++...++.+ ...+.+..++.++...|+...+.
T Consensus 158 ~aA~~r~~~v~~~yp~t~----~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 158 KAAIIRFQYVIENYPDTP----AAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHHHHSTTSH----HHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHHCCCCc----hHHHHHHHHHHHHHHhCChHHHH
Confidence 999999999998877764 24457778888999999876443
No 91
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.45 E-value=1.1e-05 Score=67.97 Aligned_cols=105 Identities=18% Similarity=0.203 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCc
Q 024043 70 HEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVT 148 (273)
Q Consensus 70 ~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~ 148 (273)
...|..+-.=|+-.-+. +|.+|+..|.+|+++-... |..|.+-+.+|.++|.|+.|++-++.|+.+-.
T Consensus 78 ~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~n------AVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp----- 146 (304)
T KOG0553|consen 78 KALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTN------AVYYCNRAAAYSKLGEYEDAVKDCESALSIDP----- 146 (304)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc------chHHHHHHHHHHHhcchHHHHHHHHHHHhcCh-----
Confidence 44555666666655444 9999999999999986544 56888999999999999999999999998843
Q ss_pred ccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccc
Q 024043 149 TSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNN 186 (273)
Q Consensus 149 ~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~ 186 (273)
.-..+|.++|.+|..+|+|.+|++.|++++...+.+.
T Consensus 147 -~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 147 -HYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNE 183 (304)
T ss_pred -HHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcH
Confidence 3457899999999999999999999999987766653
No 92
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.45 E-value=2.3e-06 Score=58.98 Aligned_cols=93 Identities=18% Similarity=0.276 Sum_probs=76.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchh
Q 024043 114 YYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVK 193 (273)
Q Consensus 114 ~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~ 193 (273)
++.++|.++...|++++|+..+++++...... ..++..+|.++...|++++|+++|++++...+.++
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~------- 68 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDN------ADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA------- 68 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCcc------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch-------
Confidence 57788999999999999999999999875432 26788999999999999999999999875443331
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHH
Q 024043 194 GHLLNAGICQLCKGDVVAITNALERY 219 (273)
Q Consensus 194 ~~~~~~gl~~l~~gd~~~A~~~~~~~ 219 (273)
..+..++.++...|++..|...+...
T Consensus 69 ~~~~~~~~~~~~~~~~~~a~~~~~~~ 94 (100)
T cd00189 69 KAYYNLGLAYYKLGKYEEALEAYEKA 94 (100)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 35677888999999998888887764
No 93
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.43 E-value=1.4e-05 Score=59.45 Aligned_cols=115 Identities=14% Similarity=0.183 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhch
Q 024043 113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGV 192 (273)
Q Consensus 113 ~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~ 192 (273)
+++.++|.++...|++++|+.+|++|++. ... ......++..+|..+..+|++++|+.++++.+...++++. ..
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~--gL~-~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~---~~ 75 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAA--GLS-GADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDEL---NA 75 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccc---cH
Confidence 46778889999999999999999999874 221 1233568889999999999999999999988765554321 11
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCHhHHHHHHHhh
Q 024043 193 KGHLLNAGICQLCKGDVVAITNALERYQDIAASMDEEDIAKFTDVVKEF 241 (273)
Q Consensus 193 ~~~~~~~gl~~l~~gd~~~A~~~~~~~~~ll~a~~~~d~~~~~~~~~~~ 241 (273)
. ...-..++....|+..+|...+-.. + ..+...++.++.-|
T Consensus 76 ~-l~~f~Al~L~~~gr~~eAl~~~l~~------l-a~~~~~y~ra~~~y 116 (120)
T PF12688_consen 76 A-LRVFLALALYNLGRPKEALEWLLEA------L-AETLPRYRRAIRFY 116 (120)
T ss_pred H-HHHHHHHHHHHCCCHHHHHHHHHHH------H-HHHHHHHHHHHHHH
Confidence 1 1122345666778777665554332 1 12233566666554
No 94
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.42 E-value=2.8e-06 Score=59.09 Aligned_cols=83 Identities=19% Similarity=0.243 Sum_probs=63.3
Q ss_pred cCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHH
Q 024043 125 EHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQL 204 (273)
Q Consensus 125 ~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l 204 (273)
.|+|++|+.+|++.++..... + ....+..+|.++..+|+|++|++++++ ...... ........|.|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~--~--~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-------~~~~~~l~a~~~~ 69 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTN--P--NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-------NPDIHYLLARCLL 69 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGT--H--HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-------HHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCC--h--hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-------CHHHHHHHHHHHH
Confidence 489999999999999987652 1 345778899999999999999999988 322222 1223345599999
Q ss_pred hcCCHHHHHHHHHHH
Q 024043 205 CKGDVVAITNALERY 219 (273)
Q Consensus 205 ~~gd~~~A~~~~~~~ 219 (273)
.+|++++|..+++++
T Consensus 70 ~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 70 KLGKYEEAIKALEKA 84 (84)
T ss_dssp HTT-HHHHHHHHHHH
T ss_pred HhCCHHHHHHHHhcC
Confidence 999999999999875
No 95
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.42 E-value=6.3e-05 Score=63.27 Aligned_cols=161 Identities=11% Similarity=0.084 Sum_probs=122.9
Q ss_pred hHHHHHHHHHHhhccccCCCCCHHHHHHHHHHH-----------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCH
Q 024043 7 RAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKA-----------------ANSFKLAKSWDKAGATYVKLANCHLKLESK 69 (273)
Q Consensus 7 ~a~~l~~~Aek~~k~~~~~~~~~~~A~~~~~~a-----------------~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 69 (273)
.+++++.+|.+.+. .|+|++|.+.|+.+ |.+|...+++++|+..|++.+..+....+
T Consensus 31 ~~~~~Y~~A~~~~~-----~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~- 104 (243)
T PRK10866 31 PPSEIYATAQQKLQ-----DGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN- 104 (243)
T ss_pred CHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc-
Confidence 67788888888776 34788888888764 56788899999999999999988865543
Q ss_pred HHHHHHHHHHHHHHhcc----------------C---HHHHHHHHHHHHHHHHhcCChhH-----------HHHHHHHHH
Q 024043 70 HEAAQAYVDAAHCYKKT----------------S---SNEAISCLEQAVNMFCDIGRLSM-----------AARYYKEIA 119 (273)
Q Consensus 70 ~~aa~~~~~~~~~~~~~----------------~---~~eA~~~~~~Al~~~~~~g~~~~-----------~a~~l~~lg 119 (273)
+..++...|.++... | ..+|+..+++-+..|+...-... .|.--..+|
T Consensus 105 --~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia 182 (243)
T PRK10866 105 --IDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVA 182 (243)
T ss_pred --hHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777663111 2 24677888888888875533222 244455788
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 024043 120 ELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEI 178 (273)
Q Consensus 120 ~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~ 178 (273)
..|.+.|.|..|+..++..++-|+... ...+++..++..|..+|..++|.......
T Consensus 183 ~~Y~~~~~y~AA~~r~~~v~~~Yp~t~---~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 183 EYYTKRGAYVAVVNRVEQMLRDYPDTQ---ATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHcCchHHHHHHHHHHHHHCCCCc---hHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 889999999999999999999998765 45678999999999999999998876544
No 96
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.42 E-value=5.6e-06 Score=70.29 Aligned_cols=106 Identities=13% Similarity=0.200 Sum_probs=88.0
Q ss_pred HHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHH
Q 024043 74 QAYVDAAHCYK-KTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSAN 152 (273)
Q Consensus 74 ~~~~~~~~~~~-~~~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~ 152 (273)
..|..+..... ..++++|+..|++.+..|+... ....++..+|.+|...|++++|+..|++.+..|.... ...
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~---~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~---~~~ 217 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDST---YQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSP---KAA 217 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCc---chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc---chh
Confidence 34444444434 3499999999999999987543 4556889999999999999999999999999998653 456
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043 153 QCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN 185 (273)
Q Consensus 153 ~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~ 185 (273)
.++.++|.++..+|++++|+..|++++...+++
T Consensus 218 dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 218 DAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 889999999999999999999999998877765
No 97
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.41 E-value=1.1e-05 Score=78.76 Aligned_cols=136 Identities=12% Similarity=0.022 Sum_probs=100.4
Q ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcC
Q 024043 28 KYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIG 106 (273)
Q Consensus 28 ~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g 106 (273)
....+-..|.+ +.+....|+++.|++.|.++++..... ...++ .+..++... +.++|+.++++++ -..
T Consensus 30 ~p~~~~~~y~~-aii~~r~Gd~~~Al~~L~qaL~~~P~~-----~~av~-dll~l~~~~G~~~~A~~~~eka~--~p~-- 98 (822)
T PRK14574 30 NPAMADTQYDS-LIIRARAGDTAPVLDYLQEESKAGPLQ-----SGQVD-DWLQIAGWAGRDQEVIDVYERYQ--SSM-- 98 (822)
T ss_pred CccchhHHHHH-HHHHHhCCCHHHHHHHHHHHHhhCccc-----hhhHH-HHHHHHHHcCCcHHHHHHHHHhc--cCC--
Confidence 44444444544 677778999999999999998775322 11222 566666555 8999999999998 111
Q ss_pred ChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 024043 107 RLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQS 182 (273)
Q Consensus 107 ~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~ 182 (273)
......+..+|.++...|++++|++.|+++++..... ..++..++.++...+++++|++.++++....
T Consensus 99 --n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n------~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d 166 (822)
T PRK14574 99 --NISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTN------PDLISGMIMTQADAGRGGVVLKQATELAERD 166 (822)
T ss_pred --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHhhcCCHHHHHHHHHHhcccC
Confidence 2223456666889999999999999999999887544 3556677899999999999999999986543
No 98
>PLN02789 farnesyltranstransferase
Probab=98.40 E-value=0.00013 Score=63.79 Aligned_cols=197 Identities=8% Similarity=-0.046 Sum_probs=111.5
Q ss_pred HHHHHcC-CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-C--HHHHHHHHHHHHHHHHhcCChhHHHHHHH
Q 024043 41 NSFKLAK-SWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-S--SNEAISCLEQAVNMFCDIGRLSMAARYYK 116 (273)
Q Consensus 41 ~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~--~~eA~~~~~~Al~~~~~~g~~~~~a~~l~ 116 (273)
.++...| +++++++++.+++....+.- .++...+.++... + .+++++++.+++++-.++- .++.
T Consensus 79 ~iL~~L~~~l~eeL~~~~~~i~~npkny------qaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy------~AW~ 146 (320)
T PLN02789 79 LCLEALDADLEEELDFAEDVAEDNPKNY------QIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNY------HAWS 146 (320)
T ss_pred HHHHHcchhHHHHHHHHHHHHHHCCcch------HHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccH------HHHH
Confidence 3444445 45667776666665532211 1233334444333 2 2566777777776655443 3788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHh---cCH----HHHHHHHHHHHHHHhccchhh
Q 024043 117 EIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAEL---EQY----HKSIEIYEEIARQSLNNNLLK 189 (273)
Q Consensus 117 ~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~---g~y----~~A~~~~~~~~~~~~~~~~~~ 189 (273)
..+.++...|+++++++++.+++++-... ..++...+.+...+ |.+ ++++++..+++...+.+..
T Consensus 147 ~R~w~l~~l~~~~eeL~~~~~~I~~d~~N------~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~S-- 218 (320)
T PLN02789 147 HRQWVLRTLGGWEDELEYCHQLLEEDVRN------NSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNES-- 218 (320)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHCCCc------hhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcC--
Confidence 88888888888888888888888774332 34566677666554 333 4677777777766665531
Q ss_pred hchhhHHHHHHHHHHh----cCCHHHHHHHHHHHH-----------HHHHHHhhcC----------------HhHHHHHH
Q 024043 190 YGVKGHLLNAGICQLC----KGDVVAITNALERYQ-----------DIAASMDEED----------------IAKFTDVV 238 (273)
Q Consensus 190 ~~~~~~~~~~gl~~l~----~gd~~~A~~~~~~~~-----------~ll~a~~~~d----------------~~~~~~~~ 238 (273)
.+...+-++.. .+...++...+.+.. -|++-+..+. ......++
T Consensus 219 -----aW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 293 (320)
T PLN02789 219 -----PWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQ 293 (320)
T ss_pred -----HHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHH
Confidence 22333323222 122334555444432 1333333221 11345677
Q ss_pred HhhhccCCCchhHHHHHHHHHHhc
Q 024043 239 KEFDSMTPLDPWKTTLLLRVKEKL 262 (273)
Q Consensus 239 ~~~~~~~~ld~~~~~~l~~~~~~~ 262 (273)
.-|+.+...||....-+.-.+..|
T Consensus 294 ~~~~~l~~~d~ir~~yw~~~~~~~ 317 (320)
T PLN02789 294 AVCSELEVADPMRRNYWAWRKSKL 317 (320)
T ss_pred HHHHHHHhhCcHHHHHHHHHHHhh
Confidence 777777788888888777666655
No 99
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.39 E-value=1.4e-05 Score=59.40 Aligned_cols=100 Identities=16% Similarity=0.156 Sum_probs=77.6
Q ss_pred HHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHH
Q 024043 75 AYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQ 153 (273)
Q Consensus 75 ~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~ 153 (273)
+..+.+.++... ++++|+.+|++|+..- . +.....+++..+|..+..+|++++|+..+++++.-++.... ...
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~g--L-~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~---~~~ 76 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAG--L-SGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDEL---NAA 76 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcC--C-CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccc---cHH
Confidence 456677777666 9999999999998731 1 23345678999999999999999999999999987654332 223
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 024043 154 CKQKVAQYAAELEQYHKSIEIYEEIAR 180 (273)
Q Consensus 154 ~~~~~a~~~~~~g~y~~A~~~~~~~~~ 180 (273)
...-++.++...|++++|++.+-.++.
T Consensus 77 l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 77 LRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345577889999999999999887753
No 100
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.38 E-value=1.5e-05 Score=77.47 Aligned_cols=62 Identities=26% Similarity=0.290 Sum_probs=32.8
Q ss_pred HHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 024043 75 AYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQ 143 (273)
Q Consensus 75 ~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~ 143 (273)
++..+|.||.++ ++++|...|++++.+-. .-+.+++++|-.|... +.++|.+++.+|+..+-
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~------~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i 180 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKADR------DNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFI 180 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCc------ccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH
Confidence 455555555554 55555555555555442 2234555555555555 55555555555555543
No 101
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.37 E-value=6.9e-06 Score=67.93 Aligned_cols=155 Identities=12% Similarity=0.032 Sum_probs=114.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHHHHHhcCChhHHHHHHHH
Q 024043 39 AANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKK-TSSNEAISCLEQAVNMFCDIGRLSMAARYYKE 117 (273)
Q Consensus 39 a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~-~~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~ 117 (273)
..+.+...|+-+.+..+..+++..+.+.. ..+...|..... .++.+|+..++++..+-+..+ +.++.
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~~~~d~------~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~------~~~~~ 139 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIAYPKDR------ELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDW------EAWNL 139 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhccCcccH------HHHHHHHHHHHHhcchHHHHHHHHHHhccCCCCh------hhhhH
Confidence 45556666777766666666554432211 122224444433 399999999999998876655 49999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHH
Q 024043 118 IAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLL 197 (273)
Q Consensus 118 lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (273)
+|-+|.+.|+.++|-.-|.+|++++... ..+..++|..+.-.|+++.|..++.++......++ ....
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~------p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~-------~v~~ 206 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNE------PSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADS-------RVRQ 206 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCC------chhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCch-------HHHH
Confidence 9999999999999999999999998654 36788999999999999999999999854333222 2345
Q ss_pred HHHHHHHhcCCHHHHHHHHHH
Q 024043 198 NAGICQLCKGDVVAITNALER 218 (273)
Q Consensus 198 ~~gl~~l~~gd~~~A~~~~~~ 218 (273)
++.++.-..||+..|+.....
T Consensus 207 NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 207 NLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHHHhhcCChHHHHhhccc
Confidence 777888889999988876554
No 102
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.37 E-value=8.6e-05 Score=60.71 Aligned_cols=155 Identities=21% Similarity=0.250 Sum_probs=112.6
Q ss_pred hhHHHHHHHHHHhhccccCCCCCHHHHHHHHHHH-----------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Q 024043 6 ARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKA-----------------ANSFKLAKSWDKAGATYVKLANCHLKLES 68 (273)
Q Consensus 6 ~~a~~l~~~Aek~~k~~~~~~~~~~~A~~~~~~a-----------------~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 68 (273)
.++..++.+|...+. .|+|.+|+..|... |.++...|+|++|+..|.+-+..+.....
T Consensus 3 ~~~~~lY~~a~~~~~-----~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~ 77 (203)
T PF13525_consen 3 DTAEALYQKALEALQ-----QGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK 77 (203)
T ss_dssp --HHHHHHHHHHHHH-----CT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT
T ss_pred CCHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc
Confidence 367888899988887 34777777777754 67888999999999999999988765543
Q ss_pred HHHHHHHHHHHHHHHhcc------------CHHHHHHHHHHHHHHHHhcCChhHH-----------HHHHHHHHHHHHhc
Q 024043 69 KHEAAQAYVDAAHCYKKT------------SSNEAISCLEQAVNMFCDIGRLSMA-----------ARYYKEIAELYESE 125 (273)
Q Consensus 69 ~~~aa~~~~~~~~~~~~~------------~~~eA~~~~~~Al~~~~~~g~~~~~-----------a~~l~~lg~~~~~~ 125 (273)
...++...|.++... ...+|+..|+..+..|+...-...+ |.--..+|..|...
T Consensus 78 ---~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~ 154 (203)
T PF13525_consen 78 ---ADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKR 154 (203)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred ---hhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344555566654322 3468999999999888776554433 44455788999999
Q ss_pred CCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHH
Q 024043 126 HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKS 171 (273)
Q Consensus 126 g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A 171 (273)
|.|..|+..++..++-|.... ....++..++..+.++|..+.|
T Consensus 155 ~~y~aA~~r~~~v~~~yp~t~---~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 155 GKYKAAIIRFQYVIENYPDTP---AAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp T-HHHHHHHHHHHHHHSTTSH---HHHHHHHHHHHHHHHTT-HHHH
T ss_pred ccHHHHHHHHHHHHHHCCCCc---hHHHHHHHHHHHHHHhCChHHH
Confidence 999999999999999998764 4567899999999999988744
No 103
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.36 E-value=7.2e-07 Score=59.51 Aligned_cols=64 Identities=27% Similarity=0.334 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHH
Q 024043 73 AQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEH-NIEQTIVFFEKAADMF 142 (273)
Q Consensus 73 a~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g-~~~~A~~~y~~Al~~~ 142 (273)
+..+.+.|.++... ++++|+.+|.+|+++... -+.++.++|.++..+| ++++|+.++++|+++.
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~------~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN------NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT------HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 56788888888777 999999999999987432 2458999999999999 7999999999998864
No 104
>PLN02789 farnesyltranstransferase
Probab=98.36 E-value=8.6e-05 Score=64.94 Aligned_cols=140 Identities=10% Similarity=0.093 Sum_probs=111.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc--CHHHHHHHHHHHHHHH
Q 024043 25 FGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT--SSNEAISCLEQAVNMF 102 (273)
Q Consensus 25 ~~~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~--~~~eA~~~~~~Al~~~ 102 (273)
++++|.+|..+|..+ +...+.+++|+..+.+++.+... -..++...+.++... ++++++.++.+++...
T Consensus 32 y~~~~~~a~~~~ra~---l~~~e~serAL~lt~~aI~lnP~------~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n 102 (320)
T PLN02789 32 YTPEFREAMDYFRAV---YASDERSPRALDLTADVIRLNPG------NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN 102 (320)
T ss_pred eCHHHHHHHHHHHHH---HHcCCCCHHHHHHHHHHHHHCch------hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC
Confidence 457899999888765 56688999999999999987432 234555667777666 6899999999999886
Q ss_pred HhcCChhHHHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 024043 103 CDIGRLSMAARYYKEIAELYESEHNI--EQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIAR 180 (273)
Q Consensus 103 ~~~g~~~~~a~~l~~lg~~~~~~g~~--~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~ 180 (273)
.+.-. ++...+.++...|+. ++++.++.+++++.... ..++...+.++..+|+|++|++++.+++.
T Consensus 103 pknyq------aW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkN------y~AW~~R~w~l~~l~~~~eeL~~~~~~I~ 170 (320)
T PLN02789 103 PKNYQ------IWHHRRWLAEKLGPDAANKELEFTRKILSLDAKN------YHAWSHRQWVLRTLGGWEDELEYCHQLLE 170 (320)
T ss_pred CcchH------HhHHHHHHHHHcCchhhHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 65543 788888888888864 78899999999775432 47899999999999999999999999987
Q ss_pred HHhcc
Q 024043 181 QSLNN 185 (273)
Q Consensus 181 ~~~~~ 185 (273)
..+.+
T Consensus 171 ~d~~N 175 (320)
T PLN02789 171 EDVRN 175 (320)
T ss_pred HCCCc
Confidence 66555
No 105
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=98.34 E-value=0.00068 Score=57.57 Aligned_cols=207 Identities=12% Similarity=0.064 Sum_probs=124.5
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc--CHHHHHHHHHHHHHHHHh
Q 024043 27 SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT--SSNEAISCLEQAVNMFCD 104 (273)
Q Consensus 27 ~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~--~~~eA~~~~~~Al~~~~~ 104 (273)
.+|++|+++....+..+-..|++..|.+.-.-.++++.+.+.+.... ...++..+.... .-.+-.++..+|+.-...
T Consensus 4 kky~eAidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~-~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~ 82 (260)
T PF04190_consen 4 KKYDEAIDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEE-SIARLIELISLFPPEEPERKKFIKAAIKWSKF 82 (260)
T ss_dssp T-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHH-HHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhCCCCcchHHHHHHHHHHHHcc
Confidence 57889999999988999999999988888888888888766443332 234566666554 222355556666666645
Q ss_pred cCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhc
Q 024043 105 IGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLN 184 (273)
Q Consensus 105 ~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~ 184 (273)
.+.+.+-......+|..+.+.|++.+|..++-.. +++.. .+...+-......|...+
T Consensus 83 ~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~-------~~~~~--~~~~~ll~~~~~~~~~~e-------------- 139 (260)
T PF04190_consen 83 GSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLG-------TDPSA--FAYVMLLEEWSTKGYPSE-------------- 139 (260)
T ss_dssp SS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS--------HHHH--HHHHHHHHHHHHHTSS----------------
T ss_pred CCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhc-------CChhH--HHHHHHHHHHHHhcCCcc--------------
Confidence 5566677778888888888777777776666321 00000 000000000011111111
Q ss_pred cchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH----------------------------HHHHHHhhcCHhHHHH
Q 024043 185 NNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ----------------------------DIAASMDEEDIAKFTD 236 (273)
Q Consensus 185 ~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~----------------------------~ll~a~~~~d~~~~~~ 236 (273)
.--...++++.+++.++...|...++.|. =|+.+++.++.+.|+.
T Consensus 140 -------~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~~~~~F~~ 212 (260)
T PF04190_consen 140 -------ADLFIARAVLQYLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERDNLPLFKK 212 (260)
T ss_dssp -------HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT-HHHHHH
T ss_pred -------hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcCcHHHHHH
Confidence 11234456677777777777777766655 2566888999999999
Q ss_pred HHHhhhccCCCchhHHHHHHHHHHhccc
Q 024043 237 VVKEFDSMTPLDPWKTTLLLRVKEKLKA 264 (273)
Q Consensus 237 ~~~~~~~~~~ld~~~~~~l~~~~~~~~~ 264 (273)
....|.....=||-..+.|.+|.+..-+
T Consensus 213 L~~~Y~~~L~rd~~~~~~L~~IG~~yFg 240 (260)
T PF04190_consen 213 LCEKYKPSLKRDPSFKEYLDKIGQLYFG 240 (260)
T ss_dssp HHHHTHH---HHHHTHHHHHHHHHHHH-
T ss_pred HHHHhCccccccHHHHHHHHHHHHHHCC
Confidence 9999998766688788899999997665
No 106
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.34 E-value=6e-05 Score=71.77 Aligned_cols=172 Identities=13% Similarity=0.133 Sum_probs=127.4
Q ss_pred CHHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhc
Q 024043 28 KYED-AADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI 105 (273)
Q Consensus 28 ~~~~-A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~ 105 (273)
.... ...++.+|-.+|.. |++++|...+...+..-.. ...+|..+|.||... +.+++..+.-.|..+-+..
T Consensus 134 ~l~~~l~~ll~eAN~lfar-g~~eeA~~i~~EvIkqdp~------~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d 206 (895)
T KOG2076|consen 134 KLAPELRQLLGEANNLFAR-GDLEEAEEILMEVIKQDPR------NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKD 206 (895)
T ss_pred ccCHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhCcc------chhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 4444 45666665555555 9999999999988876432 346799999999887 9999999999888775543
Q ss_pred CChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043 106 GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN 185 (273)
Q Consensus 106 g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~ 185 (273)
- ..|..++....++|++++|.-||.+|+..-... -......+.++.++|++..|.+.|.++....+..
T Consensus 207 ~------e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n------~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~ 274 (895)
T KOG2076|consen 207 Y------ELWKRLADLSEQLGNINQARYCYSRAIQANPSN------WELIYERSSLYQKTGDLKRAMETFLQLLQLDPPV 274 (895)
T ss_pred h------HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcc------hHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCch
Confidence 3 489999999999999999999999999886543 2456778899999999999999999997544421
Q ss_pred chhhhchhhH-HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 024043 186 NLLKYGVKGH-LLNAGICQLCKGDVVAITNALERYQD 221 (273)
Q Consensus 186 ~~~~~~~~~~-~~~~gl~~l~~gd~~~A~~~~~~~~~ 221 (273)
.+.-... ..+....+...++.+.|.+.++.+..
T Consensus 275 ---d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 275 ---DIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred ---hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 1111111 12224455667777888888887643
No 107
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.33 E-value=2.4e-06 Score=56.23 Aligned_cols=63 Identities=14% Similarity=0.207 Sum_probs=53.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043 117 EIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN 185 (273)
Q Consensus 117 ~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~ 185 (273)
.+|..+...|++++|+..|+++++... ....++..+|.++..+|++++|+..|++++...+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P------~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDP------DNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCST------THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 568889999999999999999998873 346889999999999999999999999998766554
No 108
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.33 E-value=4.3e-05 Score=74.65 Aligned_cols=165 Identities=8% Similarity=-0.014 Sum_probs=115.3
Q ss_pred CCHHHHHHHHHHHH--------------HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHH
Q 024043 27 SKYEDAADLFDKAA--------------NSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEA 91 (273)
Q Consensus 27 ~~~~~A~~~~~~a~--------------~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA 91 (273)
|+++.|.+.|.++. .++...|++++|+.+++++. ... ......+..+|.+|... ++++|
T Consensus 48 Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~---~p~---n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 48 GDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ---SSM---NISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred CCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc---cCC---CCCHHHHHHHHHHHHHcCCHHHH
Confidence 78888888888752 56677899999999999988 111 11234444557788776 99999
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHH
Q 024043 92 ISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKS 171 (273)
Q Consensus 92 ~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A 171 (273)
++.|+++++..+... .++..++.++...+++++|++.+++++..... ...+..++.++...+++.+|
T Consensus 122 iely~kaL~~dP~n~------~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~-------~~~~l~layL~~~~~~~~~A 188 (822)
T PRK14574 122 LALWQSSLKKDPTNP------DLISGMIMTQADAGRGGVVLKQATELAERDPT-------VQNYMTLSYLNRATDRNYDA 188 (822)
T ss_pred HHHHHHHHhhCCCCH------HHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc-------hHHHHHHHHHHHhcchHHHH
Confidence 999999998776553 35667789999999999999999998877543 12234445666667888889
Q ss_pred HHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHH
Q 024043 172 IEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALE 217 (273)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~ 217 (273)
++.|++++...+++.. ++.....+....|-...|.+...
T Consensus 189 L~~~ekll~~~P~n~e-------~~~~~~~~l~~~~~~~~a~~l~~ 227 (822)
T PRK14574 189 LQASSEAVRLAPTSEE-------VLKNHLEILQRNRIVEPALRLAK 227 (822)
T ss_pred HHHHHHHHHhCCCCHH-------HHHHHHHHHHHcCCcHHHHHHHH
Confidence 9999999877766531 23333333344444444544444
No 109
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=1.7e-05 Score=69.58 Aligned_cols=146 Identities=14% Similarity=0.117 Sum_probs=101.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCc------ccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccch
Q 024043 114 YYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVT------TSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNL 187 (273)
Q Consensus 114 ~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~------~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~ 187 (273)
++.--|.++...++.+.|+.+|++++.+-+..... ......+..-|.-..+.|+|.+|.++|.+++...+.+.
T Consensus 205 al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~- 283 (486)
T KOG0550|consen 205 ALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNK- 283 (486)
T ss_pred HHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcccc-
Confidence 44444566666688999999999999886643221 12234556667777889999999999999987766652
Q ss_pred hhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH----HH-----HHHHhhcCHhHHHHHHHhhhccCCCchh--HHHHHH
Q 024043 188 LKYGVKGHLLNAGICQLCKGDVVAITNALERYQ----DI-----AASMDEEDIAKFTDVVKEFDSMTPLDPW--KTTLLL 256 (273)
Q Consensus 188 ~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~----~l-----l~a~~~~d~~~~~~~~~~~~~~~~ld~~--~~~~l~ 256 (273)
. .....|.+.+.+.+..|....|..-.+... .+ ..+...-+++++.++|.+|.+..+++.- ..+.|.
T Consensus 284 -~-~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~ 361 (486)
T KOG0550|consen 284 -K-TNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLR 361 (486)
T ss_pred -c-hhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHH
Confidence 2 233466777888888888888877777654 22 3345667889999999999988776443 445555
Q ss_pred HHHHhc
Q 024043 257 RVKEKL 262 (273)
Q Consensus 257 ~~~~~~ 262 (273)
+.+..|
T Consensus 362 ~A~~aL 367 (486)
T KOG0550|consen 362 EAQLAL 367 (486)
T ss_pred HHHHHH
Confidence 555433
No 110
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.32 E-value=0.00028 Score=70.95 Aligned_cols=211 Identities=11% Similarity=0.143 Sum_probs=133.6
Q ss_pred HhhHHHHHHHHHHhh-c-c---c-----cCC-CCCHHHHHHHHHHH-----------------HHHHHHcCCHHHHHHHH
Q 024043 5 IARAEEFEKKAEKKL-N-G---W-----GLF-GSKYEDAADLFDKA-----------------ANSFKLAKSWDKAGATY 56 (273)
Q Consensus 5 ~~~a~~l~~~Aek~~-k-~---~-----~~~-~~~~~~A~~~~~~a-----------------~~~~~~~~~~~~A~~~~ 56 (273)
+++|.+++.+-.+.- + . + ++- .+++++|.++|.+. ...|...|++++|.+.|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 667777777664421 1 0 0 011 16677776666554 23566778888888877
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 024043 57 VKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFF 135 (273)
Q Consensus 57 ~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y 135 (273)
..+.+. | ...-..+|+.+...|.+. ++++|++.|.+.... |-.. -..++..+...+...|++++|.+.+
T Consensus 603 ~~M~e~----g-i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~----Gv~P-D~~TynsLI~a~~k~G~~eeA~~l~ 672 (1060)
T PLN03218 603 QMIHEY----N-IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK----GVKP-DEVFFSALVDVAGHAGDLDKAFEIL 672 (1060)
T ss_pred HHHHHc----C-CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 766543 1 111234677777777666 888888888775432 2111 1346777888888889999999988
Q ss_pred HHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHH
Q 024043 136 EKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNA 215 (273)
Q Consensus 136 ~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~ 215 (273)
.+..+. |-... ..++..+...|.+.|++++|.++|++.......- ....|..+...+...|++++|.+.
T Consensus 673 ~eM~k~----G~~pd-~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P------dvvtyN~LI~gy~k~G~~eeAlel 741 (1060)
T PLN03218 673 QDARKQ----GIKLG-TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP------TVSTMNALITALCEGNQLPKALEV 741 (1060)
T ss_pred HHHHHc----CCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 886643 22222 3578888899999999999999998874321111 122455666778888999999998
Q ss_pred HHHHH------------HHHHHH-hhcCHhHHHH
Q 024043 216 LERYQ------------DIAASM-DEEDIAKFTD 236 (273)
Q Consensus 216 ~~~~~------------~ll~a~-~~~d~~~~~~ 236 (273)
|++.. .++.++ ..|+.+.-..
T Consensus 742 f~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~ 775 (1060)
T PLN03218 742 LSEMKRLGLCPNTITYSILLVASERKDDADVGLD 775 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 88643 556655 3355544333
No 111
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.32 E-value=0.00016 Score=65.68 Aligned_cols=107 Identities=7% Similarity=0.089 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCc------------------------------ccHH--HHHHHHH
Q 024043 112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVT------------------------------TSAN--QCKQKVA 159 (273)
Q Consensus 112 a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~------------------------------~~~~--~~~~~~a 159 (273)
.......+..+...|++++|...++++++........ +... ..+..+|
T Consensus 263 ~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg 342 (409)
T TIGR00540 263 IALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALG 342 (409)
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHH
Confidence 3455556666666677777777766666644322110 0111 3455666
Q ss_pred HHHHHhcCHHHHHHHHHHH--HHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Q 024043 160 QYAAELEQYHKSIEIYEEI--ARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDIAASM 226 (273)
Q Consensus 160 ~~~~~~g~y~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~ll~a~ 226 (273)
.++.+.|+|++|.++|+++ ....++. ..+..++.++...|+..+|.+++++...++-++
T Consensus 343 ~l~~~~~~~~~A~~~le~a~a~~~~p~~--------~~~~~La~ll~~~g~~~~A~~~~~~~l~~~~~~ 403 (409)
T TIGR00540 343 QLLMKHGEFIEAADAFKNVAACKEQLDA--------NDLAMAADAFDQAGDKAEAAAMRQDSLGLMLAI 403 (409)
T ss_pred HHHHHcccHHHHHHHHHHhHHhhcCCCH--------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc
Confidence 6666666666666666642 2221111 122345666666666666666666655444443
No 112
>PLN03077 Protein ECB2; Provisional
Probab=98.31 E-value=0.0011 Score=65.99 Aligned_cols=115 Identities=6% Similarity=0.021 Sum_probs=66.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchh
Q 024043 114 YYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVK 193 (273)
Q Consensus 114 ~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~ 193 (273)
+|+.+...|...|+.++|++.|++..+. |-.+. ..++..+-..+.+.|.+++|.++|++......-.| ..
T Consensus 556 s~n~lI~~~~~~G~~~~A~~lf~~M~~~----g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P-----~~ 625 (857)
T PLN03077 556 SWNILLTGYVAHGKGSMAVELFNRMVES----GVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITP-----NL 625 (857)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCC-----ch
Confidence 3555666666667777777777664432 21111 13355555566777777777777777642211111 11
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHH---------HHHHHHHHh-hcCHhHHHHHH
Q 024043 194 GHLLNAGICQLCKGDVVAITNALER---------YQDIAASMD-EEDIAKFTDVV 238 (273)
Q Consensus 194 ~~~~~~gl~~l~~gd~~~A~~~~~~---------~~~ll~a~~-~~d~~~~~~~~ 238 (273)
..+..++.++...|++++|.+.+++ |..|+.++. .++.+.-+.+.
T Consensus 626 ~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a 680 (857)
T PLN03077 626 KHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAA 680 (857)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Confidence 3455666777788888888888876 336777663 35555444443
No 113
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.28 E-value=0.00057 Score=66.28 Aligned_cols=198 Identities=11% Similarity=0.099 Sum_probs=116.1
Q ss_pred CCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHH
Q 024043 27 SKYEDAADLFDK-----------AANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISC 94 (273)
Q Consensus 27 ~~~~~A~~~~~~-----------a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~ 94 (273)
|++++|...|.. ....|...|++++|.+.|.+.... |-... ..+|..+..++.+. ++++|.+.
T Consensus 273 g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~----g~~pd-~~t~~~ll~a~~~~g~~~~a~~i 347 (697)
T PLN03081 273 GDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDS----GVSID-QFTFSIMIRIFSRLALLEHAKQA 347 (697)
T ss_pred CCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhccchHHHHHH
Confidence 788888887764 356788888888888888876432 21111 12455555555544 66666655
Q ss_pred HHHHH---------------HHHHhcCChhHHH-----------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCc
Q 024043 95 LEQAV---------------NMFCDIGRLSMAA-----------RYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVT 148 (273)
Q Consensus 95 ~~~Al---------------~~~~~~g~~~~~a-----------~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~ 148 (273)
+...+ +.|.+.|+...+- .+|+.+...|...|+.++|++.|++..+. |-.
T Consensus 348 ~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~----g~~ 423 (697)
T PLN03081 348 HAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAE----GVA 423 (697)
T ss_pred HHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCC
Confidence 54432 2333344433332 24556666777777777777777765432 222
Q ss_pred ccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHH---------H
Q 024043 149 TSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALER---------Y 219 (273)
Q Consensus 149 ~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~---------~ 219 (273)
.. ..++..+-..+...|..++|.++|+.......-.+ ....+..++.++...|++++|.+.+++ |
T Consensus 424 Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p-----~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~ 497 (697)
T PLN03081 424 PN-HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKP-----RAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMW 497 (697)
T ss_pred CC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCC-----CccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHH
Confidence 22 24566666677777777777777777643211111 112345556667778888888887775 3
Q ss_pred HHHHHHH-hhcCHhHHHHHHH
Q 024043 220 QDIAASM-DEEDIAKFTDVVK 239 (273)
Q Consensus 220 ~~ll~a~-~~~d~~~~~~~~~ 239 (273)
..++.++ ..|+.+.-..+..
T Consensus 498 ~~Ll~a~~~~g~~~~a~~~~~ 518 (697)
T PLN03081 498 AALLTACRIHKNLELGRLAAE 518 (697)
T ss_pred HHHHHHHHHcCCcHHHHHHHH
Confidence 3667766 4566665544443
No 114
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.28 E-value=0.0001 Score=69.87 Aligned_cols=143 Identities=16% Similarity=0.167 Sum_probs=93.5
Q ss_pred HHHHHHhcc-CHHHHHHHHHHH------HHHHHhcCChhHHHHH--------HHHHHHHHHhcC-CHHHHHHHHHHH---
Q 024043 78 DAAHCYKKT-SSNEAISCLEQA------VNMFCDIGRLSMAARY--------YKEIAELYESEH-NIEQTIVFFEKA--- 138 (273)
Q Consensus 78 ~~~~~~~~~-~~~eA~~~~~~A------l~~~~~~g~~~~~a~~--------l~~lg~~~~~~g-~~~~A~~~y~~A--- 138 (273)
.+|..|... ++.+|+.+|.+| +.+.++++-.++.+.. +...+..|+..| ..+.|+.+|.+|
T Consensus 972 hlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~ 1051 (1416)
T KOG3617|consen 972 HLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMI 1051 (1416)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcch
Confidence 456666655 788888887665 5666666655554432 446677777775 888888888764
Q ss_pred ---------------HHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHH------HHHHHhcc------------
Q 024043 139 ---------------ADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEE------IARQSLNN------------ 185 (273)
Q Consensus 139 ---------------l~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~------~~~~~~~~------------ 185 (273)
+++...+=++.+-+..+.+.++.+....+|++|+.++-. ++..+.+.
T Consensus 1052 ~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~m 1131 (1416)
T KOG3617|consen 1052 GKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELM 1131 (1416)
T ss_pred HHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhc
Confidence 333333333445567889999999999999999976543 33222111
Q ss_pred ------chhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043 186 ------NLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ 220 (273)
Q Consensus 186 ------~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~ 220 (273)
....-..+..+-.++.+++.+|++-.|.+-|.+..
T Consensus 1132 Tp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAG 1172 (1416)
T KOG3617|consen 1132 TPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAG 1172 (1416)
T ss_pred CcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhh
Confidence 01112234556677888999999988888887765
No 115
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.28 E-value=9.2e-06 Score=68.51 Aligned_cols=98 Identities=11% Similarity=0.091 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhh
Q 024043 110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLK 189 (273)
Q Consensus 110 ~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~ 189 (273)
..|..+..=|.-+.+.++|.+|+..|.+||++-..+ +..|.+-|.+|.++|.|+.|++-++.++...+.
T Consensus 79 ~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~n------AVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~----- 147 (304)
T KOG0553|consen 79 ALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTN------AVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH----- 147 (304)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc------chHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-----
Confidence 345667777787888899999999999999996533 356889999999999999999999999754332
Q ss_pred hchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043 190 YGVKGHLLNAGICQLCKGDVVAITNALERYQ 220 (273)
Q Consensus 190 ~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~ 220 (273)
....|.++|++++.+|+++.|.++|.+..
T Consensus 148 --yskay~RLG~A~~~~gk~~~A~~aykKaL 176 (304)
T KOG0553|consen 148 --YSKAYGRLGLAYLALGKYEEAIEAYKKAL 176 (304)
T ss_pred --HHHHHHHHHHHHHccCcHHHHHHHHHhhh
Confidence 22467899999999999999999987754
No 116
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.28 E-value=2.4e-05 Score=66.49 Aligned_cols=100 Identities=9% Similarity=0.130 Sum_probs=82.9
Q ss_pred HHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhc
Q 024043 113 RYYKEIAELY-ESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYG 191 (273)
Q Consensus 113 ~~l~~lg~~~-~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~ 191 (273)
......+..+ ...|+|++|+..|++.+..|.... ....++..+|.+|...|+|++|+..|++++...++++ .
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~---~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~----~ 215 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDST---YQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSP----K 215 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCc---chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc----c
Confidence 4555555554 445999999999999999998653 3457789999999999999999999999998777764 2
Q ss_pred hhhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 024043 192 VKGHLLNAGICQLCKGDVVAITNALERY 219 (273)
Q Consensus 192 ~~~~~~~~gl~~l~~gd~~~A~~~~~~~ 219 (273)
..+.++++|.++...||...|...++..
T Consensus 216 ~~dAl~klg~~~~~~g~~~~A~~~~~~v 243 (263)
T PRK10803 216 AADAMFKVGVIMQDKGDTAKAKAVYQQV 243 (263)
T ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4567889999999999999999988875
No 117
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=1.7e-05 Score=69.46 Aligned_cols=110 Identities=15% Similarity=0.099 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHH---------HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043 70 HEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMA---------ARYYKEIAELYESEHNIEQTIVFFEKAA 139 (273)
Q Consensus 70 ~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~---------a~~l~~lg~~~~~~g~~~~A~~~y~~Al 139 (273)
..+|.....-|+.|.+. +|..|..-|++|+........++.. -.++.|++.++.++++|.+|+++..++|
T Consensus 205 l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvL 284 (397)
T KOG0543|consen 205 LEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVL 284 (397)
T ss_pred HHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHH
Confidence 34444555555555444 5555555555555555532211110 1244555555555555555555555555
Q ss_pred HHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043 140 DMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN 185 (273)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~ 185 (273)
++-..+ ..++.+-|.++..+|+|+.|+..|++++...+++
T Consensus 285 e~~~~N------~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N 324 (397)
T KOG0543|consen 285 ELDPNN------VKALYRRGQALLALGEYDLARDDFQKALKLEPSN 324 (397)
T ss_pred hcCCCc------hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc
Confidence 542211 2445555555555555555555555555444443
No 118
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.25 E-value=1.5e-05 Score=70.88 Aligned_cols=93 Identities=13% Similarity=0.118 Sum_probs=77.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhh
Q 024043 115 YKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKG 194 (273)
Q Consensus 115 l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~ 194 (273)
+...|......|+|++|+++|.+|+++.... ..++..+|.++..+|+|++|+..+++++...+.+ ..
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~------~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~-------~~ 71 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNN------AELYADRAQANIKLGNFTEAVADANKAIELDPSL-------AK 71 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC-------HH
Confidence 4445666666799999999999999875432 4678999999999999999999999998755543 24
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043 195 HLLNAGICQLCKGDVVAITNALERYQ 220 (273)
Q Consensus 195 ~~~~~gl~~l~~gd~~~A~~~~~~~~ 220 (273)
.++++|.++...|++..|...+++..
T Consensus 72 a~~~lg~~~~~lg~~~eA~~~~~~al 97 (356)
T PLN03088 72 AYLRKGTACMKLEEYQTAKAALEKGA 97 (356)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 67888999999999999999998865
No 119
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=2.1e-05 Score=69.00 Aligned_cols=191 Identities=13% Similarity=0.127 Sum_probs=126.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCCh------hHHH
Q 024043 40 ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRL------SMAA 112 (273)
Q Consensus 40 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~------~~~a 112 (273)
+.++...|++++|..--...+.+ +.. -+.++.--|.|+.-. +.+.|+.+|++++.+-+..-+. ...-
T Consensus 176 a~cl~~~~~~~~a~~ea~~ilkl----d~~--n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~l 249 (486)
T KOG0550|consen 176 AECLAFLGDYDEAQSEAIDILKL----DAT--NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKL 249 (486)
T ss_pred hhhhhhcccchhHHHHHHHHHhc----ccc--hhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHH
Confidence 45666677777776633332222 211 122333345555444 8899999999999876543221 1223
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhch
Q 024043 113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGV 192 (273)
Q Consensus 113 ~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~ 192 (273)
..+.+-|.-..+.|+|..|.++|.+||.+-+... ...+.+|.+.|.+...+|+..+|+.....++.... +.
T Consensus 250 e~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~--~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~-------sy 320 (486)
T KOG0550|consen 250 EVKKERGNDAFKNGNYRKAYECYTEALNIDPSNK--KTNAKLYGNRALVNIRLGRLREAISDCNEALKIDS-------SY 320 (486)
T ss_pred HHHHhhhhhHhhccchhHHHHHHHHhhcCCcccc--chhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCH-------HH
Confidence 4455667777777999999999999999987744 34468999999999999999999999999864321 23
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCHhHHHHHHHhhhccCCC
Q 024043 193 KGHLLNAGICQLCKGDVVAITNALERYQDIAASMDEEDIAKFTDVVKEFDSMTPL 247 (273)
Q Consensus 193 ~~~~~~~gl~~l~~gd~~~A~~~~~~~~~ll~a~~~~d~~~~~~~~~~~~~~~~l 247 (273)
...++..+.||+..++++.|.+-++...++-..+ .+-..+.++.....+..+-
T Consensus 321 ikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~--e~r~~l~~A~~aLkkSkRk 373 (486)
T KOG0550|consen 321 IKALLRRANCHLALEKWEEAVEDYEKAMQLEKDC--EIRRTLREAQLALKKSKRK 373 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc--chHHHHHHHHHHHHHhhhh
Confidence 3467788999999999999988888865432221 1223344444444444444
No 120
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.24 E-value=0.00037 Score=66.55 Aligned_cols=83 Identities=14% Similarity=0.201 Sum_probs=54.4
Q ss_pred hHHHHHHHHHHhhccccCCCCCHHHHHHHHHH--------------HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHH
Q 024043 7 RAEEFEKKAEKKLNGWGLFGSKYEDAADLFDK--------------AANSFKLAKSWDKAGATYVKLANCHLKLESKHEA 72 (273)
Q Consensus 7 ~a~~l~~~Aek~~k~~~~~~~~~~~A~~~~~~--------------a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~a 72 (273)
+.+.+|.+|.-++- .|++++|..++.+ .|.+|..+|+..++..++..|+.+..+ ++
T Consensus 138 ~l~~ll~eAN~lfa-----rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~--d~--- 207 (895)
T KOG2076|consen 138 ELRQLLGEANNLFA-----RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK--DY--- 207 (895)
T ss_pred HHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC--Ch---
Confidence 45666666665443 2678888777765 488999999999999999999877532 22
Q ss_pred HHHHHHHHHHHhcc-CHHHHHHHHHHHHH
Q 024043 73 AQAYVDAAHCYKKT-SSNEAISCLEQAVN 100 (273)
Q Consensus 73 a~~~~~~~~~~~~~-~~~eA~~~~~~Al~ 100 (273)
.-+..++....+. ...+|.-||.+|+.
T Consensus 208 -e~W~~ladls~~~~~i~qA~~cy~rAI~ 235 (895)
T KOG2076|consen 208 -ELWKRLADLSEQLGNINQARYCYSRAIQ 235 (895)
T ss_pred -HHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 2233344444444 46666666666654
No 121
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.22 E-value=0.00044 Score=62.71 Aligned_cols=21 Identities=5% Similarity=-0.235 Sum_probs=11.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 024043 200 GICQLCKGDVVAITNALERYQ 220 (273)
Q Consensus 200 gl~~l~~gd~~~A~~~~~~~~ 220 (273)
+..+...|++++|...+++..
T Consensus 270 a~~l~~~g~~~~A~~~l~~~l 290 (409)
T TIGR00540 270 AEHLIDCDDHDSAQEIIFDGL 290 (409)
T ss_pred HHHHHHCCChHHHHHHHHHHH
Confidence 344555566666666555543
No 122
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=3.5e-05 Score=67.63 Aligned_cols=134 Identities=13% Similarity=0.154 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC--CHH-------HHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHH
Q 024043 34 DLFDKAANSFKLAKSWDKAGATYVKLANCHLKLE--SKH-------EAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFC 103 (273)
Q Consensus 34 ~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~-------~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~ 103 (273)
.....-|+.|...|+|..|..-|.+|+.....-. +.. --..++.|++.|+.++ +|.+|+.++.+++++-.
T Consensus 209 ~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~ 288 (397)
T KOG0543|consen 209 DRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP 288 (397)
T ss_pred HHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC
Confidence 3444457888888888888888888887775211 111 2334688999999999 99999999999998755
Q ss_pred hcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCH-HHHHHHHHHHH
Q 024043 104 DIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQY-HKSIEIYEEIA 179 (273)
Q Consensus 104 ~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y-~~A~~~~~~~~ 179 (273)
.+ .++|.+-|.++..+|+|+.|+..|++|+++...+. .+...+..+..+..++ ++..++|.+..
T Consensus 289 ~N------~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nk------a~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 289 NN------VKALYRRGQALLALGEYDLARDDFQKALKLEPSNK------AARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred Cc------hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44 46999999999999999999999999999977553 3344555555554444 44467777764
No 123
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.21 E-value=0.00011 Score=66.43 Aligned_cols=156 Identities=10% Similarity=0.058 Sum_probs=90.2
Q ss_pred HHHHhhc-cc-cCCCCCHHHHHHHHHHHH--------------HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 024043 14 KAEKKLN-GW-GLFGSKYEDAADLFDKAA--------------NSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYV 77 (273)
Q Consensus 14 ~Aek~~k-~~-~~~~~~~~~A~~~~~~a~--------------~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~ 77 (273)
+|.+.+. |+ .++.|||+.|......+. ..-...|+++.|..++.++.+...... .+ ...
T Consensus 83 ~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~----~~-~~l 157 (398)
T PRK10747 83 RARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQ----LP-VEI 157 (398)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcch----HH-HHH
Confidence 4444443 42 234477777776666542 223567788888888888765432111 11 111
Q ss_pred HHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc------------
Q 024043 78 DAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQN------------ 144 (273)
Q Consensus 78 ~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~------------ 144 (273)
..+.++... ++++|+..+++..+..+++. .++.-++.+|...|++++|++.+.+....-..
T Consensus 158 ~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~------~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a 231 (398)
T PRK10747 158 TRVRIQLARNENHAARHGVDKLLEVAPRHP------EVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQA 231 (398)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 235566555 88888888888776654433 36667777777778888777555554421100
Q ss_pred -----------------------c-CCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 024043 145 -----------------------E-EVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIAR 180 (273)
Q Consensus 145 -----------------------~-~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~ 180 (273)
. ............+|..+...|++++|.+..+++..
T Consensus 232 ~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~ 291 (398)
T PRK10747 232 WIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK 291 (398)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 0 00011233455667777788888888888877754
No 124
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.19 E-value=0.00056 Score=68.82 Aligned_cols=129 Identities=7% Similarity=0.023 Sum_probs=82.1
Q ss_pred HHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHH
Q 024043 75 AYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQ 153 (273)
Q Consensus 75 ~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~ 153 (273)
+|..+..+|.+. ++++|.+.|++..+. | ...-..++..+...|.+.|++++|+..|.+.... |-... ..
T Consensus 581 TynaLI~ay~k~G~ldeA~elf~~M~e~----g-i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~----Gv~PD-~~ 650 (1060)
T PLN03218 581 TVGALMKACANAGQVDRAKEVYQMIHEY----N-IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK----GVKPD-EV 650 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHc----C-CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HH
Confidence 444444555444 666666666655432 1 1112346777777777888888888888765432 22222 35
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 024043 154 CKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERY 219 (273)
Q Consensus 154 ~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~ 219 (273)
++..+...+.+.|++++|.+++.+........ ....+..++.+|...|+++.|.+.|++.
T Consensus 651 TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p------d~~tynsLI~ay~k~G~~eeA~~lf~eM 710 (1060)
T PLN03218 651 FFSALVDVAGHAGDLDKAFEILQDARKQGIKL------GTVSYSSLMGACSNAKNWKKALELYEDI 710 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 67788888888899999999888875432111 1124455667788899999999888864
No 125
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.19 E-value=4.1e-05 Score=56.98 Aligned_cols=99 Identities=16% Similarity=0.102 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccH
Q 024043 73 AQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSA 151 (273)
Q Consensus 73 a~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~ 151 (273)
...++.-|.+..+. +.+.|++.|.+|+.+..+. +.+|+|-+..+...|+.++|++-+.+|+++.-.. ...+
T Consensus 43 S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~r------aSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~--trta 114 (175)
T KOG4555|consen 43 SRELELKAIALAEAGDLDGALELFGQALCLAPER------ASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ--TRTA 114 (175)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhcccc------hHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc--chHH
Confidence 34445556666555 9999999999999998765 4599999999999999999999999999997544 4567
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 024043 152 NQCKQKVAQYAAELEQYHKSIEIYEEIA 179 (273)
Q Consensus 152 ~~~~~~~a~~~~~~g~y~~A~~~~~~~~ 179 (273)
.+++.+-|.+|..+|+-+.|..-|+.+.
T Consensus 115 cqa~vQRg~lyRl~g~dd~AR~DFe~AA 142 (175)
T KOG4555|consen 115 CQAFVQRGLLYRLLGNDDAARADFEAAA 142 (175)
T ss_pred HHHHHHHHHHHHHhCchHHHHHhHHHHH
Confidence 7889999999999999999999999985
No 126
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.16 E-value=0.00014 Score=70.84 Aligned_cols=143 Identities=13% Similarity=0.080 Sum_probs=98.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHH
Q 024043 25 FGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFC 103 (273)
Q Consensus 25 ~~~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~ 103 (273)
+.|.+.+|+. +....+...+++++|+.....+++.... ....|.-.|.++... ++.++.-. +++.++.
T Consensus 26 ~~p~n~~a~~---~Li~~~~~~~~~deai~i~~~~l~~~P~------~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~ 94 (906)
T PRK14720 26 YSLSKFKELD---DLIDAYKSENLTDEAKDICEEHLKEHKK------SISALYISGILSLSRRPLNDSNLL--NLIDSFS 94 (906)
T ss_pred CCcchHHHHH---HHHHHHHhcCCHHHHHHHHHHHHHhCCc------ceehHHHHHHHHHhhcchhhhhhh--hhhhhcc
Confidence 3466666654 5677888999999999988866655421 122333344444333 33333222 2222222
Q ss_pred -------------hcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHH
Q 024043 104 -------------DIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHK 170 (273)
Q Consensus 104 -------------~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~ 170 (273)
..|+....-.++..+|.||..+|++++|...|++++++-. .-+.+++++|..|... +.++
T Consensus 95 ~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~------~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 95 QNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADR------DNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred cccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCc------ccHHHHHHHHHHHHHh-hHHH
Confidence 2233334445999999999999999999999999999862 2257899999999999 9999
Q ss_pred HHHHHHHHHHHHhcc
Q 024043 171 SIEIYEEIARQSLNN 185 (273)
Q Consensus 171 A~~~~~~~~~~~~~~ 185 (273)
|.+++.+++.+.+..
T Consensus 168 A~~m~~KAV~~~i~~ 182 (906)
T PRK14720 168 AITYLKKAIYRFIKK 182 (906)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999998766654
No 127
>PRK15331 chaperone protein SicA; Provisional
Probab=98.12 E-value=8.8e-05 Score=57.71 Aligned_cols=99 Identities=13% Similarity=0.107 Sum_probs=75.2
Q ss_pred hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccch
Q 024043 108 LSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNL 187 (273)
Q Consensus 108 ~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~ 187 (273)
+...-......|--+...|++++|...|+--.- + ++ .....+..+|.|+..+++|++|+..|..+....++++.
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~-~----d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~ 106 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCI-Y----DF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYR 106 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-h----Cc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCC
Confidence 333444555666666667999999998864443 2 12 22456899999999999999999999999766666653
Q ss_pred hhhchhhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 024043 188 LKYGVKGHLLNAGICQLCKGDVVAITNALERY 219 (273)
Q Consensus 188 ~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~ 219 (273)
..+.+|.|++..|+...|+.+|+..
T Consensus 107 -------p~f~agqC~l~l~~~~~A~~~f~~a 131 (165)
T PRK15331 107 -------PVFFTGQCQLLMRKAAKARQCFELV 131 (165)
T ss_pred -------ccchHHHHHHHhCCHHHHHHHHHHH
Confidence 3578899999999999999998875
No 128
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.12 E-value=0.00023 Score=58.90 Aligned_cols=125 Identities=17% Similarity=0.164 Sum_probs=74.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 024043 42 SFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAEL 121 (273)
Q Consensus 42 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~ 121 (273)
.+...|+|++|+++|+.-++ .||...+..-..++.+-..+..-+||+....-++.|... ..+|..++++
T Consensus 95 ~lEa~~~~~~A~e~y~~lL~-----ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D------~EAW~eLaei 163 (289)
T KOG3060|consen 95 LLEATGNYKEAIEYYESLLE-----DDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMND------QEAWHELAEI 163 (289)
T ss_pred HHHHhhchhhHHHHHHHHhc-----cCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCc------HHHHHHHHHH
Confidence 34444555555555554332 233333333344444444444456666666666665433 3477888888
Q ss_pred HHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHh
Q 024043 122 YESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE---QYHKSIEIYEEIARQSL 183 (273)
Q Consensus 122 ~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g---~y~~A~~~~~~~~~~~~ 183 (273)
|...|+|++|.-||++-+=+-+ ....++.++|+++.-+| ++.-|.++|.+++...+
T Consensus 164 Y~~~~~f~kA~fClEE~ll~~P------~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 164 YLSEGDFEKAAFCLEELLLIQP------FNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHhHhHHHHHHHHHHHHHHcCC------CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 8888888888888877665532 22456777777766554 67777788888775544
No 129
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.11 E-value=0.00061 Score=66.10 Aligned_cols=34 Identities=24% Similarity=0.236 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHHH
Q 024043 27 SKYEDAADLFDK-----------AANSFKLAKSWDKAGATYVKLA 60 (273)
Q Consensus 27 ~~~~~A~~~~~~-----------a~~~~~~~~~~~~A~~~~~~a~ 60 (273)
|+++.|..+|.+ ....|...|++++|...|.+..
T Consensus 172 g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~ 216 (697)
T PLN03081 172 GMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMW 216 (697)
T ss_pred CCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 677888777654 3456777788888888888764
No 130
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=98.10 E-value=9.7e-05 Score=60.78 Aligned_cols=94 Identities=16% Similarity=0.174 Sum_probs=80.1
Q ss_pred CHHHHHHHHHHHHHHHHhc-CChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc----C---CcccHHHHHHHH
Q 024043 87 SSNEAISCLEQAVNMFCDI-GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE----E---VTTSANQCKQKV 158 (273)
Q Consensus 87 ~~~eA~~~~~~Al~~~~~~-g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~----~---~~~~~~~~~~~~ 158 (273)
.+++|++.|.-|+-.+.-. +++...|.++.++|.+|...|+.++...++++|++.|++. . .......++.-+
T Consensus 92 t~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLi 171 (214)
T PF09986_consen 92 TLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLI 171 (214)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHH
Confidence 7889999999999888754 4777899999999999999999888888888998888742 1 234556788999
Q ss_pred HHHHHHhcCHHHHHHHHHHHHH
Q 024043 159 AQYAAELEQYHKSIEIYEEIAR 180 (273)
Q Consensus 159 a~~~~~~g~y~~A~~~~~~~~~ 180 (273)
|.+..++|++++|+..|.+++.
T Consensus 172 geL~rrlg~~~eA~~~fs~vi~ 193 (214)
T PF09986_consen 172 GELNRRLGNYDEAKRWFSRVIG 193 (214)
T ss_pred HHHHHHhCCHHHHHHHHHHHHc
Confidence 9999999999999999999973
No 131
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.08 E-value=0.0019 Score=58.44 Aligned_cols=134 Identities=11% Similarity=0.046 Sum_probs=94.0
Q ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hccCHHHHHHHHHHHHHHHHhcC
Q 024043 28 KYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCY-KKTSSNEAISCLEQAVNMFCDIG 106 (273)
Q Consensus 28 ~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~-~~~~~~eA~~~~~~Al~~~~~~g 106 (273)
+...+-..+.+ |-+....|+|+.|.....++.+. .+. ....+..++.+. ...++++|..++.+|.+..+...
T Consensus 80 r~~~~~~~~~~-gl~a~~eGd~~~A~k~l~~~~~~----~~~--p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~ 152 (398)
T PRK10747 80 KRRRARKQTEQ-ALLKLAEGDYQQVEKLMTRNADH----AEQ--PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQ 152 (398)
T ss_pred HHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHhc----ccc--hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcch
Confidence 44455555544 66667789999998766665443 111 233456667774 44499999999999976443221
Q ss_pred ChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 024043 107 RLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIA 179 (273)
Q Consensus 107 ~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~ 179 (273)
.+ .....+.++...|++++|...+++..+..+.. ..++..++.+|...|++++|++++.+..
T Consensus 153 ----~~-~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~------~~al~ll~~~~~~~gdw~~a~~~l~~l~ 214 (398)
T PRK10747 153 ----LP-VEITRVRIQLARNENHAARHGVDKLLEVAPRH------PEVLRLAEQAYIRTGAWSSLLDILPSMA 214 (398)
T ss_pred ----HH-HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 11 22234888888999999999999998876433 3668888999999999999998777764
No 132
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.99 E-value=0.00026 Score=52.83 Aligned_cols=101 Identities=20% Similarity=0.180 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHH
Q 024043 33 ADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMA 111 (273)
Q Consensus 33 ~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~ 111 (273)
..-.+.-|......|+.+.|++-|.+++.+..+ .+.+|++-+..++-. ++++|++-+.+|+++.- +....+
T Consensus 43 S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~------raSayNNRAQa~RLq~~~e~ALdDLn~AleLag--~~trta 114 (175)
T KOG4555|consen 43 SRELELKAIALAEAGDLDGALELFGQALCLAPE------RASAYNNRAQALRLQGDDEEALDDLNKALELAG--DQTRTA 114 (175)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhccc------chHhhccHHHHHHHcCChHHHHHHHHHHHHhcC--ccchHH
Confidence 334445588889999999999999999999743 356899999999877 99999999999999863 446677
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 024043 112 ARYYKEIAELYESEHNIEQTIVFFEKAADM 141 (273)
Q Consensus 112 a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~ 141 (273)
..++..-|.+|..+|+-+.|..-|+.|.++
T Consensus 115 cqa~vQRg~lyRl~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 115 CQAFVQRGLLYRLLGNDDAARADFEAAAQL 144 (175)
T ss_pred HHHHHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence 888999999999999999999999998876
No 133
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=97.98 E-value=0.00016 Score=51.40 Aligned_cols=84 Identities=14% Similarity=0.069 Sum_probs=67.9
Q ss_pred HHHHHhccCHHHHHHHHHHHHHHHHhcCChh---HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHH
Q 024043 79 AAHCYKKTSSNEAISCLEQAVNMFCDIGRLS---MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCK 155 (273)
Q Consensus 79 ~~~~~~~~~~~eA~~~~~~Al~~~~~~g~~~---~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~ 155 (273)
..+..+..++.+|++.+.+..+.....+... ....++.++|.++...|++++|+..+++|+.+.++.++......++
T Consensus 5 ~~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al 84 (94)
T PF12862_consen 5 YLNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYAL 84 (94)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 3444555589999999999999888777655 6677788899999999999999999999999999999877777776
Q ss_pred HHHHHHH
Q 024043 156 QKVAQYA 162 (273)
Q Consensus 156 ~~~a~~~ 162 (273)
..+..+.
T Consensus 85 ~~~~~l~ 91 (94)
T PF12862_consen 85 SWLANLL 91 (94)
T ss_pred HHHHHHh
Confidence 6665543
No 134
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.96 E-value=0.00031 Score=65.44 Aligned_cols=143 Identities=15% Similarity=0.066 Sum_probs=97.0
Q ss_pred CCHHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc---C------HHHHHHHH
Q 024043 27 SKYEDAADLFDKAANSFKL--AKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT---S------SNEAISCL 95 (273)
Q Consensus 27 ~~~~~A~~~~~~a~~~~~~--~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~---~------~~eA~~~~ 95 (273)
+.-..|.++|.++-..+.. .+++..|+.+|++|+++-... +.++..++.+|... . ...+.+..
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~------a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~ 407 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDF------TYAQAEKALADIVRHSQQPLDEKQLAALSTEL 407 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 4556899999986433321 234789999999999885332 33444444444222 2 22333333
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHH
Q 024043 96 EQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIY 175 (273)
Q Consensus 96 ~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~ 175 (273)
++++.+- .+... +.++.-+|..+...|++++|...+++|+++-. + ...+..+|.++...|++++|++.|
T Consensus 408 ~~a~al~---~~~~~-~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p------s-~~a~~~lG~~~~~~G~~~eA~~~~ 476 (517)
T PRK10153 408 DNIVALP---ELNVL-PRIYEILAVQALVKGKTDEAYQAINKAIDLEM------S-WLNYVLLGKVYELKGDNRLAADAY 476 (517)
T ss_pred HHhhhcc---cCcCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC------C-HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3333321 12211 36777778888888999999999999999962 2 468999999999999999999999
Q ss_pred HHHHHHHhccc
Q 024043 176 EEIARQSLNNN 186 (273)
Q Consensus 176 ~~~~~~~~~~~ 186 (273)
+++....+..+
T Consensus 477 ~~A~~L~P~~p 487 (517)
T PRK10153 477 STAFNLRPGEN 487 (517)
T ss_pred HHHHhcCCCCc
Confidence 99987666654
No 135
>KOG3024 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.95 E-value=0.0084 Score=50.50 Aligned_cols=231 Identities=14% Similarity=0.135 Sum_probs=161.5
Q ss_pred HHHHHHhhccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCHHHH
Q 024043 12 EKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKTSSNEA 91 (273)
Q Consensus 12 ~~~Aek~~k~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~eA 91 (273)
+++.+.+++- ++-+|+|-+|...|.-..+-|..++.++.|++.....+.++-+.+....++........++.+......
T Consensus 6 ~~R~e~kl~a-~~~~~d~Yeahqm~RTl~fR~~~~K~~~~aieL~~~ga~~ffk~~Q~~saaDl~~~~le~~eka~~ad~ 84 (312)
T KOG3024|consen 6 LQRVEGKLRA-SIELGDYYEAHQMYRTLVFRYTRQKAHEDAIELLYDGALCFFKLKQRGSAADLLVLVLEVLEKAEVADS 84 (312)
T ss_pred HHHHHHHHhh-ccccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhHh
Confidence 3444554441 234579999999999999999999999999999999999998888877788888777777755322111
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHhccC-CcccHHHHHHHHHHHHHHhcCHH
Q 024043 92 ISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHN-IEQTIVFFEKAADMFQNEE-VTTSANQCKQKVAQYAAELEQYH 169 (273)
Q Consensus 92 ~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~-~~~A~~~y~~Al~~~~~~~-~~~~~~~~~~~~a~~~~~~g~y~ 169 (273)
+... .+++.++...+. -.+=..+.++|+.+..+-+ -+.+.+..+.-+|..+..-+++.
T Consensus 85 ~~~~--------------------anl~~ll~e~~~~eper~~~v~raikWS~~~~~~k~G~p~lH~~la~~l~~e~~~~ 144 (312)
T KOG3024|consen 85 LLKV--------------------ANLAELLGEADPSEPERKTFVRRAIKWSKEFGEGKYGHPELHALLADKLWTEDNVE 144 (312)
T ss_pred HHHH--------------------HHHHHHHhhcCCCccHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcccHH
Confidence 1111 233444433322 2234566777888877753 34566788889999999989999
Q ss_pred HHHHHHHHHH------H----HHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH-------------------
Q 024043 170 KSIEIYEEIA------R----QSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ------------------- 220 (273)
Q Consensus 170 ~A~~~~~~~~------~----~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~------------------- 220 (273)
+|..+|-..- . ..+.. ..+...-..+.++.+-++...|...|.+.+..|.
T Consensus 145 ~a~~HFll~~d~s~~a~~ll~y~~~r-~f~~e~d~f~~~aVlq~L~len~~~A~~s~t~yt~~f~~k~~p~~e~~~~~~~ 223 (312)
T KOG3024|consen 145 EARRHFLLSEDGSKFAYMLLEYSMSR-GFKSEPDVFYVQAVLQYLCLENDSSAARSFTTYTSMFNMKDFPMDEIKHKAGT 223 (312)
T ss_pred HHHhHhhhcCChHHHHHHHHHHHhhc-ccccCchHHHHHHHHHHHhhcchHHHHHHHHHHHHhhccccccchhhcccccc
Confidence 9998876541 0 01110 0111112344566777888888889999998887
Q ss_pred ---------------HHHHHHhhcCHhHHHHHHHhhhccCCCchhHHHHHHHHHHhccc
Q 024043 221 ---------------DIAASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKLKA 264 (273)
Q Consensus 221 ---------------~ll~a~~~~d~~~~~~~~~~~~~~~~ld~~~~~~l~~~~~~~~~ 264 (273)
=|+..++.+|...|......|+....-|+-....|.+|.+..-|
T Consensus 224 k~~~~~~~pllNFl~~Ll~t~~~k~~~~f~~L~~~Y~~slkrd~~~~~~L~~IgelyFg 282 (312)
T KOG3024|consen 224 KNPFPFEYPLLNFLHFLLETIQRKDLPLFLMLRVKYQPSLKRDQAYNEYLDRIGELYFG 282 (312)
T ss_pred cCCCccccchHHHHHHHHHHHhccccHHHHHHHHHccchhhhhHHHHHHHHHHHHHHcC
Confidence 26778899999999999999998777787778899999875543
No 136
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.93 E-value=0.00026 Score=68.32 Aligned_cols=128 Identities=12% Similarity=0.099 Sum_probs=90.0
Q ss_pred HHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHH
Q 024043 79 AAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQK 157 (273)
Q Consensus 79 ~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~ 157 (273)
.|-.|.+. ++..|+..|+-|+.+-++. -++|..+|++|-..|+|.-|+..|.+|..+-+. .-.....
T Consensus 568 rG~yyLea~n~h~aV~~fQsALR~dPkD------~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~------s~y~~fk 635 (1238)
T KOG1127|consen 568 RGPYYLEAHNLHGAVCEFQSALRTDPKD------YNLWLGLGEAYPESGRYSHALKVFTKASLLRPL------SKYGRFK 635 (1238)
T ss_pred ccccccCccchhhHHHHHHHHhcCCchh------HHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH------hHHHHHH
Confidence 44455554 7788999999888766544 359999999999999999999999999987432 2344667
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHH
Q 024043 158 VAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALER 218 (273)
Q Consensus 158 ~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~ 218 (273)
.+.+....|+|.+|+..+..++.........+-+..+.+.+....+...|=..+|...++.
T Consensus 636 ~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~ek 696 (1238)
T KOG1127|consen 636 EAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEK 696 (1238)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 7888899999999999999987432222222345556666665555555544445444444
No 137
>PLN03077 Protein ECB2; Provisional
Probab=97.92 E-value=0.0049 Score=61.28 Aligned_cols=61 Identities=7% Similarity=-0.020 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 024043 153 QCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERY 219 (273)
Q Consensus 153 ~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~ 219 (273)
.+|+.+...|...|+.++|+++|++.......- .. ..+..+...+...|++++|.+.|+..
T Consensus 555 ~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P-----d~-~T~~~ll~a~~~~g~v~ea~~~f~~M 615 (857)
T PLN03077 555 VSWNILLTGYVAHGKGSMAVELFNRMVESGVNP-----DE-VTFISLLCACSRSGMVTQGLEYFHSM 615 (857)
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-----Cc-ccHHHHHHHHhhcChHHHHHHHHHHH
Confidence 346666777777888888888888765321110 11 12233334566678888888877754
No 138
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.91 E-value=0.0032 Score=52.31 Aligned_cols=165 Identities=16% Similarity=0.066 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChh
Q 024043 31 DAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLS 109 (273)
Q Consensus 31 ~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~ 109 (273)
+-+.+|++....-.-.|+.+-|-.|+.+...-+.. ++ ++..--|..+... ++++|+++|..-+ ..|+.
T Consensus 50 e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~--S~----RV~~lkam~lEa~~~~~~A~e~y~~lL-----~ddpt 118 (289)
T KOG3060|consen 50 EIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPG--SK----RVGKLKAMLLEATGNYKEAIEYYESLL-----EDDPT 118 (289)
T ss_pred hHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC--Ch----hHHHHHHHHHHHhhchhhHHHHHHHHh-----ccCcc
Confidence 45677888877777788888888888876655522 21 1222223333323 6777777777654 35566
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhh
Q 024043 110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLK 189 (273)
Q Consensus 110 ~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~ 189 (273)
..+---++++.+-.. |+.-+|++....=++.|..+ .++|..++.+|+..|+|.+|+-+|++.+...+-++.
T Consensus 119 ~~v~~KRKlAilka~-GK~l~aIk~ln~YL~~F~~D------~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l-- 189 (289)
T KOG3060|consen 119 DTVIRKRKLAILKAQ-GKNLEAIKELNEYLDKFMND------QEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPL-- 189 (289)
T ss_pred hhHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHhcCc------HHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHH--
Confidence 666666777766665 88889999999999999654 478999999999999999999999999866555432
Q ss_pred hchhhHHHHHHHHHHhcC---CHHHHHHHHHHHH
Q 024043 190 YGVKGHLLNAGICQLCKG---DVVAITNALERYQ 220 (273)
Q Consensus 190 ~~~~~~~~~~gl~~l~~g---d~~~A~~~~~~~~ 220 (273)
++.+++.++..+| ++..++.++.+..
T Consensus 190 -----~f~rlae~~Yt~gg~eN~~~arkyy~~al 218 (289)
T KOG3060|consen 190 -----YFQRLAEVLYTQGGAENLELARKYYERAL 218 (289)
T ss_pred -----HHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3445555544444 4555666666543
No 139
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.88 E-value=0.02 Score=54.73 Aligned_cols=223 Identities=15% Similarity=0.070 Sum_probs=153.8
Q ss_pred HhhHHHHHHHHHHhhcccc-CCC-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 024043 5 IARAEEFEKKAEKKLNGWG-LFG-SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHC 82 (273)
Q Consensus 5 ~~~a~~l~~~Aek~~k~~~-~~~-~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~ 82 (273)
+++=.+|++-|=|.|.... -|+ +...+|.-.++-+..++....+++.|..+..++..+.++.+-..-.-.+-.-++.+
T Consensus 30 l~~Y~kLI~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i 109 (608)
T PF10345_consen 30 LKQYYKLIATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARI 109 (608)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 4444566666666665211 345 56778888888877888899999999999999999998844444445555566888
Q ss_pred HhccCHHHHHHHHHHHHHHHHhcCChhHH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHH
Q 024043 83 YKKTSSNEAISCLEQAVNMFCDIGRLSMA-ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQY 161 (273)
Q Consensus 83 ~~~~~~~eA~~~~~~Al~~~~~~g~~~~~-a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~ 161 (273)
+.+.++..|....+++++.+...+...-. +--+.++...... +++..|++.++....+....+++.....+...-+.+
T Consensus 110 ~~~~~~~~a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~-~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l 188 (608)
T PF10345_consen 110 YFKTNPKAALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQH-KDYNAALENLQSIAQLANQRGDPAVFVLASLSEALL 188 (608)
T ss_pred HHhcCHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHH
Confidence 88887777999999999999875442221 1112222222233 899999999999999998778776655666666778
Q ss_pred HHHhcCHHHHHHHHHHHHHHHhc----cchhhhchhhHHHHH-HHHHHhcCCHHHHHHHHHHHHHHHHHHhh
Q 024043 162 AAELEQYHKSIEIYEEIARQSLN----NNLLKYGVKGHLLNA-GICQLCKGDVVAITNALERYQDIAASMDE 228 (273)
Q Consensus 162 ~~~~g~y~~A~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-gl~~l~~gd~~~A~~~~~~~~~ll~a~~~ 228 (273)
+...+.++++++..+++.....+ .............-+ ..|.+..|++..+...+.+....++....
T Consensus 189 ~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~ 260 (608)
T PF10345_consen 189 HLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKK 260 (608)
T ss_pred HhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhc
Confidence 88888899999999988532211 111111122122222 34578899999999999999888877644
No 140
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.87 E-value=0.00043 Score=64.87 Aligned_cols=111 Identities=14% Similarity=0.047 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHH
Q 024043 92 ISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKS 171 (273)
Q Consensus 92 ~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A 171 (273)
-.+|++|.+++... .+++.+.+|......++|.++.++++.++++.. ....+|..+|-+..+++++..|
T Consensus 470 ~s~yEkawElsn~~-----sarA~r~~~~~~~~~~~fs~~~~hle~sl~~np------lq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 470 PSLYEKAWELSNYI-----SARAQRSLALLILSNKDFSEADKHLERSLEINP------LQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred hHHHHHHHHHhhhh-----hHHHHHhhccccccchhHHHHHHHHHHHhhcCc------cchhHHHhccHHHHHHhhhHHH
Confidence 36788888877543 344667777777778999999999999999864 4457899999999999999999
Q ss_pred HHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043 172 IEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ 220 (273)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~ 220 (273)
...|.+...-.++ ..+.+.|+...|+..|+..+|..++.+..
T Consensus 539 v~aF~rcvtL~Pd-------~~eaWnNls~ayi~~~~k~ra~~~l~EAl 580 (777)
T KOG1128|consen 539 VKAFHRCVTLEPD-------NAEAWNNLSTAYIRLKKKKRAFRKLKEAL 580 (777)
T ss_pred HHHHHHHhhcCCC-------chhhhhhhhHHHHHHhhhHHHHHHHHHHh
Confidence 9999998765554 34578888889999999999999998865
No 141
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.86 E-value=0.00018 Score=60.20 Aligned_cols=98 Identities=10% Similarity=0.084 Sum_probs=80.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhh
Q 024043 115 YKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKG 194 (273)
Q Consensus 115 l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~ 194 (273)
+.+.|.-+...|+|..|..-|..=+.-|.... -...++..+|.++..+|+|+.|...|..++...+.++ ...+
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~---~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~----KApd 216 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNST---YTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSP----KAPD 216 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCc---ccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCC----CChH
Confidence 56666666777999999999998888887654 3356789999999999999999999999987766654 3557
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 024043 195 HLLNAGICQLCKGDVVAITNALERY 219 (273)
Q Consensus 195 ~~~~~gl~~l~~gd~~~A~~~~~~~ 219 (273)
.++++|.|....|+.+.|+..|++.
T Consensus 217 allKlg~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 217 ALLKLGVSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 8899999999999999888888874
No 142
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.86 E-value=0.00047 Score=57.24 Aligned_cols=115 Identities=12% Similarity=0.157 Sum_probs=89.8
Q ss_pred CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhc
Q 024043 87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE 166 (273)
Q Consensus 87 ~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g 166 (273)
+-+.+..+..+++..+.... ..+.-.|......|++.+|+..+++|..+.+.+ ...+..+|.+|.+.|
T Consensus 81 ~a~~~l~~~~~~~~~~~~d~------~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d------~~~~~~lgaaldq~G 148 (257)
T COG5010 81 DADSSLAVLQKSAIAYPKDR------ELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTD------WEAWNLLGAALDQLG 148 (257)
T ss_pred cccchHHHHhhhhccCcccH------HHHHHHHHHHHHhcchHHHHHHHHHHhccCCCC------hhhhhHHHHHHHHcc
Confidence 55555555555554443332 244447888888899999999999999886544 367889999999999
Q ss_pred CHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043 167 QYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ 220 (273)
Q Consensus 167 ~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~ 220 (273)
+.++|...|.+++.-.++++ .+..|+|..++..||+..|+..+....
T Consensus 149 r~~~Ar~ay~qAl~L~~~~p-------~~~nNlgms~~L~gd~~~A~~lll~a~ 195 (257)
T COG5010 149 RFDEARRAYRQALELAPNEP-------SIANNLGMSLLLRGDLEDAETLLLPAY 195 (257)
T ss_pred ChhHHHHHHHHHHHhccCCc-------hhhhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999987666654 367899999999999999999888743
No 143
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=0.0076 Score=53.45 Aligned_cols=168 Identities=11% Similarity=0.032 Sum_probs=97.2
Q ss_pred HHHHhccCHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHH
Q 024043 80 AHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVA 159 (273)
Q Consensus 80 ~~~~~~~~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a 159 (273)
...|...++..|+.+-++++..-.+.- .++..-|.++...|++++|+-.|+.|..+.+ ..-.||..+-
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~~r~~------~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap------~rL~~Y~GL~ 375 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSEPRNH------EALILKGRLLIALERHTQAVIAFRTAQMLAP------YRLEIYRGLF 375 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccCcccc------hHHHhccHHHHhccchHHHHHHHHHHHhcch------hhHHHHHHHH
Confidence 333444477788888888776544332 2566667777777888888888887776642 2235666666
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHHhc---------------cchhhhchh--------------hHHHHHHHHHHhcCCHH
Q 024043 160 QYAAELEQYHKSIEIYEEIARQSLN---------------NNLLKYGVK--------------GHLLNAGICQLCKGDVV 210 (273)
Q Consensus 160 ~~~~~~g~y~~A~~~~~~~~~~~~~---------------~~~~~~~~~--------------~~~~~~gl~~l~~gd~~ 210 (273)
.+|...|++.+|.-+-..+...... ++.++-.++ .....+...++..|...
T Consensus 376 hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~ 455 (564)
T KOG1174|consen 376 HSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTK 455 (564)
T ss_pred HHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccc
Confidence 6666666666666544443211111 111110011 11122233456667777
Q ss_pred HHHHHHHHHHHHHH----HHhhcC----HhHHHHHHHhhhccCCCchhHHHHHHHHH
Q 024043 211 AITNALERYQDIAA----SMDEED----IAKFTDVVKEFDSMTPLDPWKTTLLLRVK 259 (273)
Q Consensus 211 ~A~~~~~~~~~ll~----a~~~~d----~~~~~~~~~~~~~~~~ld~~~~~~l~~~~ 259 (273)
.+...+++|..... ....|| ...+++++..|...-++||...+-+.-+.
T Consensus 456 D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~ 512 (564)
T KOG1174|consen 456 DIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLR 512 (564)
T ss_pred hHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHH
Confidence 77777777761100 011122 35688899999999999999886655443
No 144
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.82 E-value=1.9e-05 Score=51.93 Aligned_cols=59 Identities=15% Similarity=0.247 Sum_probs=46.3
Q ss_pred HHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 024043 79 AAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQ 143 (273)
Q Consensus 79 ~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~ 143 (273)
.|..+... ++++|+++|++++.... .-..++..+|.++..+|++++|+.+|++++++..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P------~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDP------DNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCST------THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 45555555 88999999998876653 3566899999999999999999999999988764
No 145
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.80 E-value=0.00011 Score=65.83 Aligned_cols=67 Identities=13% Similarity=0.043 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 024043 72 AAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADM 141 (273)
Q Consensus 72 aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~ 141 (273)
-+..+.++|.+|... +|++|+.+|++|+++... ...+..++.++|.+|..+|++++|+.++++|+++
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd---~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPN---PDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345555666666555 666666666666665321 1122245666666666666666666666666665
No 146
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.80 E-value=0.0051 Score=57.27 Aligned_cols=165 Identities=11% Similarity=0.106 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCC
Q 024043 69 KHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEV 147 (273)
Q Consensus 69 ~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~ 147 (273)
+....+++.-++..|... ++++|+++.++|+++-+ .....+...|.++...|++.+|.++++.|-.+-..+.
T Consensus 190 p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htP------t~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DR- 262 (517)
T PF12569_consen 190 PSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTP------TLVELYMTKARILKHAGDLKEAAEAMDEARELDLADR- 262 (517)
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhH-
Confidence 344567888899999777 99999999999998743 3456899999999999999999999999988865442
Q ss_pred cccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH--hccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-
Q 024043 148 TTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQS--LNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDIAA- 224 (273)
Q Consensus 148 ~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~ll~- 224 (273)
.+-.+.+..+.+.|++++|.+......... +...+...+...+....|.+|...|++..|...|....+.++
T Consensus 263 -----yiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~ 337 (517)
T PF12569_consen 263 -----YINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDD 337 (517)
T ss_pred -----HHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 345677888999999999999877653211 111222233444555679999999999888765554321111
Q ss_pred -----------HHhhcCHhHHHHHHHhhhccC
Q 024043 225 -----------SMDEEDIAKFTDVVKEFDSMT 245 (273)
Q Consensus 225 -----------a~~~~d~~~~~~~~~~~~~~~ 245 (273)
++..+.+..+-+.+.--|.+.
T Consensus 338 ~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~ 369 (517)
T PF12569_consen 338 FEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLR 369 (517)
T ss_pred HhcccccHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 334555566666555444443
No 147
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.80 E-value=0.00022 Score=59.79 Aligned_cols=106 Identities=12% Similarity=0.189 Sum_probs=89.7
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHH
Q 024043 75 AYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQC 154 (273)
Q Consensus 75 ~~~~~~~~~~~~~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~ 154 (273)
.|..+-..+...+|..|...|..=+.-|.. ....++++.=||+++..+|+|+.|...|..++.-|... ..+.+.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~---s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s---~KApda 217 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPN---STYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKS---PKAPDA 217 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCC---CCChHH
Confidence 576666677777899999999888777753 34567788999999999999999999999988766544 466789
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhccc
Q 024043 155 KQKVAQYAAELEQYHKSIEIYEEIARQSLNNN 186 (273)
Q Consensus 155 ~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~ 186 (273)
+.++|.+...+|+.++|...|++++.+.++.+
T Consensus 218 llKlg~~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 218 LLKLGVSLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 99999999999999999999999999888875
No 148
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.79 E-value=0.00062 Score=64.13 Aligned_cols=145 Identities=14% Similarity=0.082 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCC
Q 024043 29 YEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGR 107 (273)
Q Consensus 29 ~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~ 107 (273)
|..-..+--.++..|...++.+++..|..+|..++ +..+..|...|.++... ...+|.++|..|+.+-+..=
T Consensus 646 ~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~------~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv- 718 (799)
T KOG4162|consen 646 WYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID------PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHV- 718 (799)
T ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc------hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCc-
Confidence 33334455567888999999999999999988776 45567888899998666 99999999999988765432
Q ss_pred hhHHHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043 108 LSMAARYYKEIAELYESEHNIEQTIV--FFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN 185 (273)
Q Consensus 108 ~~~~a~~l~~lg~~~~~~g~~~~A~~--~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~ 185 (273)
.+...+|.++...|+..-|.. +...|+.+-.. -..+|..+|.++..+|+.++|.++|+-++.-...+
T Consensus 719 -----~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~------n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~ 787 (799)
T KOG4162|consen 719 -----PSMTALAELLLELGSPRLAEKRSLLSDALRLDPL------NHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESN 787 (799)
T ss_pred -----HHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCC
Confidence 377888999999998888887 88888887432 24789999999999999999999999998777777
Q ss_pred chhhhc
Q 024043 186 NLLKYG 191 (273)
Q Consensus 186 ~~~~~~ 191 (273)
|..+++
T Consensus 788 PV~pFs 793 (799)
T KOG4162|consen 788 PVLPFS 793 (799)
T ss_pred Cccccc
Confidence 655544
No 149
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=0.018 Score=50.89 Aligned_cols=215 Identities=13% Similarity=0.133 Sum_probs=142.1
Q ss_pred HHHHHHHHHH--HHHcCCHHHHHHHHHHHHHHHHHcCCH----HHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhc
Q 024043 33 ADLFDKAANS--FKLAKSWDKAGATYVKLANCHLKLESK----HEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI 105 (273)
Q Consensus 33 ~~~~~~a~~~--~~~~~~~~~A~~~~~~a~~~~~~~~~~----~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~ 105 (273)
+++|.....+ ....+++.+|..+-...+.-. ..++. .-+|..|.-+..+|... +...-...+..-+....--
T Consensus 124 i~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i-~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLr 202 (493)
T KOG2581|consen 124 IEAYLYLLVLLFLIDQKEYKEADKISDALLASI-SIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLR 202 (493)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-HhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhc
Confidence 4455554332 223467777776655544332 22222 34666666666667555 5444444444444444434
Q ss_pred CChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043 106 GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN 185 (273)
Q Consensus 106 g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~ 185 (273)
.+..+.|...+-+=..|...+.|++|-..-.++. |....+....+..+.-+|.+..-+++|..|.+++-.++...+..
T Consensus 203 hd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~--~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 203 HDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSV--YPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred CcchhHHHHHHHHHHHHhhhHHHHHHHHHhhccc--CccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 4888888888888888888788888877766644 33333333556778889999999999999999999998776654
Q ss_pred chhhhchhhHHHHH-HHHHHhcCCHH--------HHHHHHHHHHHHHHHHhhcCHhHHHHHHHhhhccCCCchhHH
Q 024043 186 NLLKYGVKGHLLNA-GICQLCKGDVV--------AITNALERYQDIAASMDEEDIAKFTDVVKEFDSMTPLDPWKT 252 (273)
Q Consensus 186 ~~~~~~~~~~~~~~-gl~~l~~gd~~--------~A~~~~~~~~~ll~a~~~~d~~~~~~~~~~~~~~~~ld~~~~ 252 (273)
. ..|......++ .++.+.+|+++ ..++++.-|-.|-.|+..||+.+|++.+.+|..--..|...+
T Consensus 281 ~--alGf~q~v~k~~ivv~ll~geiPers~F~Qp~~~ksL~~Yf~Lt~AVr~gdlkkF~~~leq~k~~f~~D~ty~ 354 (493)
T KOG2581|consen 281 A--ALGFRQQVNKLMIVVELLLGEIPERSVFRQPGMRKSLRPYFKLTQAVRLGDLKKFNETLEQFKDKFQADGTYT 354 (493)
T ss_pred h--hhhHHHHHHHHHHHHHHHcCCCcchhhhcCccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhCCcch
Confidence 2 23333333333 45577888765 356778888899999999999999999999976655565544
No 150
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.77 E-value=0.0013 Score=55.89 Aligned_cols=139 Identities=17% Similarity=0.145 Sum_probs=87.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHH------HHhcc-C-HHHHHHHH--HHHHHHHHhcCC
Q 024043 39 AANSFKLAKSWDKAGATYVKLANCHLKLESK-HEAAQAYVDAAH------CYKKT-S-SNEAISCL--EQAVNMFCDIGR 107 (273)
Q Consensus 39 a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-~~aa~~~~~~~~------~~~~~-~-~~eA~~~~--~~Al~~~~~~g~ 107 (273)
.|-||....+|..|.+||++...++.+.... .-.|.++.+++. +.... | +.---++. +.|+. | ..+|
T Consensus 50 LgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIk-Y-se~D 127 (459)
T KOG4340|consen 50 LGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIK-Y-SEGD 127 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHh-c-cccc
Confidence 4678888889999999999888777544321 223333333322 11111 2 11111111 11111 1 1122
Q ss_pred h------------hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHH
Q 024043 108 L------------SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIY 175 (273)
Q Consensus 108 ~------------~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~ 175 (273)
+ .+.|.++.+.|-+..+.|+|++|++-|+.|+++. |-. ...-.+++.++...|+|..|+++.
T Consensus 128 l~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvs---Gyq---pllAYniALaHy~~~qyasALk~i 201 (459)
T KOG4340|consen 128 LPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVS---GYQ---PLLAYNLALAHYSSRQYASALKHI 201 (459)
T ss_pred CcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhc---CCC---chhHHHHHHHHHhhhhHHHHHHHH
Confidence 1 2456778888888888899999999999999874 211 233468899999999999999999
Q ss_pred HHHHHHHhcc
Q 024043 176 EEIARQSLNN 185 (273)
Q Consensus 176 ~~~~~~~~~~ 185 (273)
.+++.+.+.+
T Consensus 202 SEIieRG~r~ 211 (459)
T KOG4340|consen 202 SEIIERGIRQ 211 (459)
T ss_pred HHHHHhhhhc
Confidence 9998665543
No 151
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.74 E-value=0.0056 Score=57.18 Aligned_cols=85 Identities=20% Similarity=0.228 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhc
Q 024043 87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE 166 (273)
Q Consensus 87 ~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g 166 (273)
++++|..++.+|.. ..+..+++.+-+.+...+++.++|++++++++..|..- ...|..+|.++.+++
T Consensus 633 e~eraR~llakar~-------~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f------~Kl~lmlGQi~e~~~ 699 (913)
T KOG0495|consen 633 ELERARDLLAKARS-------ISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDF------HKLWLMLGQIEEQME 699 (913)
T ss_pred cHHHHHHHHHHHhc-------cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCch------HHHHHHHhHHHHHHH
Confidence 45555555555433 23334555555555555566666666666666665422 244555666666666
Q ss_pred CHHHHHHHHHHHHHHHhc
Q 024043 167 QYHKSIEIYEEIARQSLN 184 (273)
Q Consensus 167 ~y~~A~~~~~~~~~~~~~ 184 (273)
+.+.|.+.|..-...+++
T Consensus 700 ~ie~aR~aY~~G~k~cP~ 717 (913)
T KOG0495|consen 700 NIEMAREAYLQGTKKCPN 717 (913)
T ss_pred HHHHHHHHHHhccccCCC
Confidence 666666666554444443
No 152
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.74 E-value=0.0012 Score=50.24 Aligned_cols=89 Identities=17% Similarity=0.130 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhc
Q 024043 112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYG 191 (273)
Q Consensus 112 a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~ 191 (273)
+..+.+-|.-....|+|++|++.++.-..-|.-.. .+..+...++.+|.+.|+|++|+..+++.+...+.++.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~---ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~---- 82 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGE---YAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN---- 82 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCc---ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC----
Confidence 44556666666677999999999988777776543 44578999999999999999999999999987777653
Q ss_pred hhhHHHHHHHHHHhcC
Q 024043 192 VKGHLLNAGICQLCKG 207 (273)
Q Consensus 192 ~~~~~~~~gl~~l~~g 207 (273)
+-..++..|+++..+.
T Consensus 83 vdYa~Y~~gL~~~~~~ 98 (142)
T PF13512_consen 83 VDYAYYMRGLSYYEQD 98 (142)
T ss_pred ccHHHHHHHHHHHHHh
Confidence 4456777888876654
No 153
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.74 E-value=0.0015 Score=62.22 Aligned_cols=145 Identities=16% Similarity=0.197 Sum_probs=79.2
Q ss_pred CCHHHHHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHH--
Q 024043 27 SKYEDAADLFDKA------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQA-- 98 (273)
Q Consensus 27 ~~~~~A~~~~~~a------~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~eA~~~~~~A-- 98 (273)
|-.++|..+|.+. -.+|...|.|++|.+.-+.--.+ +-.-..|+.++.+-.+.|.+.|+++|+++
T Consensus 814 gMlEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~~DRi-------HLr~Tyy~yA~~Lear~Di~~AleyyEK~~~ 886 (1416)
T KOG3617|consen 814 GMLEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAETKDRI-------HLRNTYYNYAKYLEARRDIEAALEYYEKAGV 886 (1416)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhccce-------ehhhhHHHHHHHHHhhccHHHHHHHHHhcCC
Confidence 4667777777764 35666677777666533221111 11122333333333333677777777765
Q ss_pred --HHHHHhcCChhHH----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC------CcccHH--------
Q 024043 99 --VNMFCDIGRLSMA----------ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEE------VTTSAN-------- 152 (273)
Q Consensus 99 --l~~~~~~g~~~~~----------a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~------~~~~~~-------- 152 (273)
.++++-..+...+ -..|.=-|..++..|+.+.|+.+|..|-+.|.... +...++
T Consensus 887 hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd 966 (1416)
T KOG3617|consen 887 HAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGD 966 (1416)
T ss_pred hHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhccc
Confidence 2222211111111 24667778889999999999999999888875421 111110
Q ss_pred -HHHHHHHHHHHHhcCHHHHHHHHHHH
Q 024043 153 -QCKQKVAQYAAELEQYHKSIEIYEEI 178 (273)
Q Consensus 153 -~~~~~~a~~~~~~g~y~~A~~~~~~~ 178 (273)
.+-..+|.-|...|+..+|+..|.++
T Consensus 967 ~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 967 KAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 12233445555566666666666665
No 154
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.72 E-value=0.00055 Score=66.22 Aligned_cols=148 Identities=14% Similarity=0.152 Sum_probs=71.3
Q ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcC
Q 024043 48 SWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEH 126 (273)
Q Consensus 48 ~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g 126 (273)
+...|..+|.+++.+- ..-|.+|.-+|.+|+.. |...|..||++|.++-. +.+.+..-++..|....
T Consensus 473 ~~~~al~ali~alrld------~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa------tdaeaaaa~adtyae~~ 540 (1238)
T KOG1127|consen 473 NSALALHALIRALRLD------VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDA------TDAEAAAASADTYAEES 540 (1238)
T ss_pred hHHHHHHHHHHHHhcc------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc------hhhhhHHHHHHHhhccc
Confidence 4455555555555443 22345666677777776 77777777777766522 11223333344444444
Q ss_pred CHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhc
Q 024043 127 NIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCK 206 (273)
Q Consensus 127 ~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~ 206 (273)
+.+.|..-.-.+.+.... ......+...|..|.+.++..+|+..|+.++...+.+ -+.+..+|.+|...
T Consensus 541 ~we~a~~I~l~~~qka~a----~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD-------~n~W~gLGeAY~~s 609 (1238)
T KOG1127|consen 541 TWEEAFEICLRAAQKAPA----FACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKD-------YNLWLGLGEAYPES 609 (1238)
T ss_pred cHHHHHHHHHHHhhhchH----HHHHhhhhhccccccCccchhhHHHHHHHHhcCCchh-------HHHHHHHHHHHHhc
Confidence 444443332222111110 1111223334445555555555555555554333332 12445556666666
Q ss_pred CCHHHHHHHHHH
Q 024043 207 GDVVAITNALER 218 (273)
Q Consensus 207 gd~~~A~~~~~~ 218 (273)
|.+..|.++|.+
T Consensus 610 Gry~~AlKvF~k 621 (1238)
T KOG1127|consen 610 GRYSHALKVFTK 621 (1238)
T ss_pred CceehHHHhhhh
Confidence 666666665543
No 155
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=0.0026 Score=56.34 Aligned_cols=140 Identities=18% Similarity=0.204 Sum_probs=98.3
Q ss_pred CCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHhcc-CHH
Q 024043 26 GSKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCH-LKLESKHEAAQAYVDAAHCYKKT-SSN 89 (273)
Q Consensus 26 ~~~~~~A~~~~~~a--------------~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~aa~~~~~~~~~~~~~-~~~ 89 (273)
+.++..|..+-.++ |+++...++..+|+-+|..|..+. -++..+. .+..+|... ++.
T Consensus 313 ~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~-------GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 313 EKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYR-------GLFHSYLAQKRFK 385 (564)
T ss_pred hhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHH-------HHHHHHHhhchHH
Confidence 46888887777665 788899999999999999988776 2444333 333333322 333
Q ss_pred ------------------------------------HHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHH
Q 024043 90 ------------------------------------EAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIV 133 (273)
Q Consensus 90 ------------------------------------eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~ 133 (273)
+|..++++++.+-+ .=..+-..+++++...|.+..++.
T Consensus 386 EA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P------~Y~~AV~~~AEL~~~Eg~~~D~i~ 459 (564)
T KOG1174|consen 386 EANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINP------IYTPAVNLIAELCQVEGPTKDIIK 459 (564)
T ss_pred HHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCC------ccHHHHHHHHHHHHhhCccchHHH
Confidence 44444444443211 112345677888888899999999
Q ss_pred HHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043 134 FFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN 185 (273)
Q Consensus 134 ~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~ 185 (273)
.+++++..|.+. ...+.+|+++.....|++|.++|..++...+++
T Consensus 460 LLe~~L~~~~D~-------~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 460 LLEKHLIIFPDV-------NLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred HHHHHHhhcccc-------HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 999999888643 356889999999999999999999998766655
No 156
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.71 E-value=8.6e-05 Score=42.73 Aligned_cols=33 Identities=18% Similarity=0.481 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC
Q 024043 114 YYKEIAELYESEHNIEQTIVFFEKAADMFQNEE 146 (273)
Q Consensus 114 ~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~ 146 (273)
++.+||.+|...|++++|+++|++|+.+..+.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~~ 33 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDPE 33 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence 467788888888888888888888887765543
No 157
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.71 E-value=0.002 Score=59.81 Aligned_cols=162 Identities=11% Similarity=0.171 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHH
Q 024043 33 ADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMA 111 (273)
Q Consensus 33 ~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~ 111 (273)
..+|.++-.+|. .++|...+.+....+.-+.+-| .++.-.|.....+ +.++|.++.+.++..-.+ .
T Consensus 8 ~~lF~~~lk~yE-~kQYkkgLK~~~~iL~k~~eHg------eslAmkGL~L~~lg~~~ea~~~vr~glr~d~~------S 74 (700)
T KOG1156|consen 8 NALFRRALKCYE-TKQYKKGLKLIKQILKKFPEHG------ESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK------S 74 (700)
T ss_pred HHHHHHHHHHHH-HHHHHhHHHHHHHHHHhCCccc------hhHHhccchhhcccchHHHHHHHHHHhccCcc------c
Confidence 346666666665 4577777777777666333333 3444455555444 889999999988873332 3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhc
Q 024043 112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYG 191 (273)
Q Consensus 112 a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~ 191 (273)
-.||.-+|.++....+|++|+.||+.|+.+-... .+++..++.+..++++|+...+.-.+.+...++
T Consensus 75 ~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN------~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~------- 141 (700)
T KOG1156|consen 75 HVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDN------LQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS------- 141 (700)
T ss_pred chhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-------
Confidence 4599999999999999999999999999884322 367999999999999999888876666543333
Q ss_pred hhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043 192 VKGHLLNAGICQLCKGDVVAITNALERYQ 220 (273)
Q Consensus 192 ~~~~~~~~gl~~l~~gd~~~A~~~~~~~~ 220 (273)
....|+...+.+...|++..|...++.|.
T Consensus 142 ~ra~w~~~Avs~~L~g~y~~A~~il~ef~ 170 (700)
T KOG1156|consen 142 QRASWIGFAVAQHLLGEYKMALEILEEFE 170 (700)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466777778888899999988888876
No 158
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.71 E-value=0.00016 Score=48.52 Aligned_cols=61 Identities=16% Similarity=0.276 Sum_probs=52.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043 119 AELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN 185 (273)
Q Consensus 119 g~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~ 185 (273)
..+|...+++++|++++++++.+.+. ....+...|.++..+|++++|++.|++++...+++
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~------~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~ 62 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPD------DPELWLQRARCLFQLGRYEEALEDLERALELSPDD 62 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcc------cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc
Confidence 56788889999999999999999654 24668889999999999999999999998766654
No 159
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.70 E-value=0.00082 Score=62.23 Aligned_cols=128 Identities=12% Similarity=0.160 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHH
Q 024043 73 AQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSAN 152 (273)
Q Consensus 73 a~~~~~~~~~~~~~~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~ 152 (273)
+..+..+..||...+|...+...+..+.-+.+.|+ ++...|..+..+|+-++|..+...++.. + ....
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHge------slAmkGL~L~~lg~~~ea~~~vr~glr~-----d-~~S~ 75 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKKFPEHGE------SLAMKGLTLNCLGKKEEAYELVRLGLRN-----D-LKSH 75 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccch------hHHhccchhhcccchHHHHHHHHHHhcc-----C-cccc
Confidence 34566677777777899999999999887777776 8889999999999999999999988862 2 2234
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 024043 153 QCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERY 219 (273)
Q Consensus 153 ~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~ 219 (273)
.||.-+|.++....+|++|+++|+.++....++. ..+.-+.+.+...+|+.........+
T Consensus 76 vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~-------qilrDlslLQ~QmRd~~~~~~tr~~L 135 (700)
T KOG1156|consen 76 VCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNL-------QILRDLSLLQIQMRDYEGYLETRNQL 135 (700)
T ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcH-------HHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 7999999999999999999999999987665552 24555666677777777665555443
No 160
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.68 E-value=0.015 Score=53.74 Aligned_cols=134 Identities=13% Similarity=0.148 Sum_probs=79.5
Q ss_pred HHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-------------
Q 024043 77 VDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMF------------- 142 (273)
Q Consensus 77 ~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~------------- 142 (273)
.+-+.|..+. .+++|+.++.-+ .... -..+.--|.++..+|+|++|+..|+.-+.-.
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~~~----~~~~-----~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~ 153 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLKGL----DRLD-----DKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLL 153 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHhcc----cccc-----hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 3445565555 888888888711 1111 1244445677777788888888887642111
Q ss_pred -----------hccC-CcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH---hccchh-----hhchhhHHHHHHHH
Q 024043 143 -----------QNEE-VTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQS---LNNNLL-----KYGVKGHLLNAGIC 202 (273)
Q Consensus 143 -----------~~~~-~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~---~~~~~~-----~~~~~~~~~~~gl~ 202 (273)
.... .+...-+.+.+.|-+++..|+|.+|++.++++...+ +.+... .....-+-..+.-+
T Consensus 154 a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayV 233 (652)
T KOG2376|consen 154 AVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYV 233 (652)
T ss_pred HHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHH
Confidence 1111 122334667888899999999999999999994221 111100 01111222344556
Q ss_pred HHhcCCHHHHHHHHHHH
Q 024043 203 QLCKGDVVAITNALERY 219 (273)
Q Consensus 203 ~l~~gd~~~A~~~~~~~ 219 (273)
+..+|+..+|...+...
T Consensus 234 lQ~~Gqt~ea~~iy~~~ 250 (652)
T KOG2376|consen 234 LQLQGQTAEASSIYVDI 250 (652)
T ss_pred HHHhcchHHHHHHHHHH
Confidence 77789998887766654
No 161
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.68 E-value=0.00039 Score=60.01 Aligned_cols=150 Identities=20% Similarity=0.187 Sum_probs=81.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHH
Q 024043 38 KAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYK 116 (273)
Q Consensus 38 ~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~ 116 (273)
-+|.++...|++++|+....+. ++ ..+..-...+|... |++.|.+.++..-++ ++- .++.
T Consensus 107 ~~A~i~~~~~~~~~AL~~l~~~-------~~----lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~----~eD----~~l~ 167 (290)
T PF04733_consen 107 LAATILFHEGDYEEALKLLHKG-------GS----LELLALAVQILLKMNRPDLAEKELKNMQQI----DED----SILT 167 (290)
T ss_dssp HHHHHHCCCCHHHHHHCCCTTT-------TC----HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC----SCC----HHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHcc-------Cc----ccHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCc----HHHH
Confidence 3456666677777766665542 12 12333345566555 777777666554322 221 2344
Q ss_pred HHHHHHHhc----CCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhch
Q 024043 117 EIAELYESE----HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGV 192 (273)
Q Consensus 117 ~lg~~~~~~----g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~ 192 (273)
+++..+... +.+.+|.-.|++-.+.+. ....+++..|.++..+|+|++|.+.+++++...++ .
T Consensus 168 qLa~awv~l~~g~e~~~~A~y~f~El~~~~~------~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-------~ 234 (290)
T PF04733_consen 168 QLAEAWVNLATGGEKYQDAFYIFEELSDKFG------STPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-------D 234 (290)
T ss_dssp HHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-------H
T ss_pred HHHHHHHHHHhCchhHHHHHHHHHHHHhccC------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-------C
Confidence 444444432 356777777766433321 12355777788888888888888887777533222 2
Q ss_pred hhHHHHHHHHHHhcCCH-HHHHHHHHHH
Q 024043 193 KGHLLNAGICQLCKGDV-VAITNALERY 219 (273)
Q Consensus 193 ~~~~~~~gl~~l~~gd~-~~A~~~~~~~ 219 (273)
.+.+.+++.|....|+. +.+.+.+++.
T Consensus 235 ~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 235 PDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 34566777777777765 4455555553
No 162
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.67 E-value=0.0081 Score=52.12 Aligned_cols=107 Identities=6% Similarity=0.008 Sum_probs=66.8
Q ss_pred HHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 024043 64 LKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMF 142 (273)
Q Consensus 64 ~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~ 142 (273)
...+++.+...++ ++|.-+... ++..|+.+|..|++.-..+ =.++.+-|.+|..+|+-..|+.-+.+.+++-
T Consensus 30 ~~~~~~advekhl-ElGk~lla~~Q~sDALt~yHaAve~dp~~------Y~aifrRaT~yLAmGksk~al~Dl~rVlelK 102 (504)
T KOG0624|consen 30 ESTASPADVEKHL-ELGKELLARGQLSDALTHYHAAVEGDPNN------YQAIFRRATVYLAMGKSKAALQDLSRVLELK 102 (504)
T ss_pred HhcCCHHHHHHHH-HHHHHHHHhhhHHHHHHHHHHHHcCCchh------HHHHHHHHHHHhhhcCCccchhhHHHHHhcC
Confidence 3445555555554 355544333 7777777777777643322 1255666777777777777777777777663
Q ss_pred hccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Q 024043 143 QNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSL 183 (273)
Q Consensus 143 ~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~ 183 (273)
. .-..+..+-|.++.++|++++|..-|..++...+
T Consensus 103 p------DF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~ 137 (504)
T KOG0624|consen 103 P------DFMAARIQRGVVLLKQGELEQAEADFDQVLQHEP 137 (504)
T ss_pred c------cHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCC
Confidence 2 2234566777777778888888877777764433
No 163
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.67 E-value=0.00079 Score=53.99 Aligned_cols=125 Identities=18% Similarity=0.207 Sum_probs=93.3
Q ss_pred HHHHHHHHHHhhccccCCCCCHHHHHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 024043 8 AEEFEKKAEKKLNGWGLFGSKYEDAAD---LFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYK 84 (273)
Q Consensus 8 a~~l~~~Aek~~k~~~~~~~~~~~A~~---~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~ 84 (273)
-++||.+-||.+.. ..-+++.. -...-|+-+-.-|+|++|..-|..|+++...... ...+..|.+-|.+..
T Consensus 72 eEeLmae~E~i~~d-----eek~k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~-e~rsIly~Nraaa~i 145 (271)
T KOG4234|consen 72 EEELMAEIEKIFSD-----EEKDKAIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTST-EERSILYSNRAAALI 145 (271)
T ss_pred HHHHHHHHHHhcCc-----HHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH-HHHHHHHhhhHHHHH
Confidence 45788888886651 12222222 2333477777789999999999999998876544 556677888888887
Q ss_pred cc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 024043 85 KT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQN 144 (273)
Q Consensus 85 ~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~ 144 (273)
++ ..+.||+-+.+|+++..... +++.+-+.+|+++..|++|++-|.+.+++-..
T Consensus 146 Kl~k~e~aI~dcsKaiel~pty~------kAl~RRAeayek~ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 146 KLRKWESAIEDCSKAIELNPTYE------KALERRAEAYEKMEKYEEALEDYKKILESDPS 200 (271)
T ss_pred HhhhHHHHHHHHHhhHhcCchhH------HHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcc
Confidence 77 78999999999999876543 37778889999999999999999998887543
No 164
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.66 E-value=0.0018 Score=61.03 Aligned_cols=106 Identities=15% Similarity=0.246 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHhcc-CHHHHHHHHHH------HHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----
Q 024043 72 AAQAYVDAAHCYKKT-SSNEAISCLEQ------AVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAAD---- 140 (273)
Q Consensus 72 aa~~~~~~~~~~~~~-~~~eA~~~~~~------Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~---- 140 (273)
....|..+|.+|.+. +|++|++||++ |+++.+ ..-|...-+.-..-|..++..|+++.|+.+|-+|-.
T Consensus 660 k~elydkagdlfeki~d~dkale~fkkgdaf~kaielar-fafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~ka 738 (1636)
T KOG3616|consen 660 KGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELAR-FAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKA 738 (1636)
T ss_pred hhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHH-hhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHH
Confidence 445678889999888 99999999864 454433 344555566666778888888999999988865432
Q ss_pred ---------------HHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 024043 141 ---------------MFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEI 178 (273)
Q Consensus 141 ---------------~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~ 178 (273)
+.....+...+...+-.+++-|...|+|+.|-++|.++
T Consensus 739 ieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~ 791 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA 791 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc
Confidence 23323333333445556667777778888888877766
No 165
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.66 E-value=0.0016 Score=58.50 Aligned_cols=150 Identities=20% Similarity=0.210 Sum_probs=105.3
Q ss_pred HHHHHHHHHHhhc-cccC-CCCCHHHHH---H-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 024043 8 AEEFEKKAEKKLN-GWGL-FGSKYEDAA---D-LFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAH 81 (273)
Q Consensus 8 a~~l~~~Aek~~k-~~~~-~~~~~~~A~---~-~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~ 81 (273)
+..+++-+++.+. |+.. ..+....+- . +-.-...++...++++.|++.+++...-. +. +..-++.
T Consensus 138 ~~~fi~~~~~~~~~G~~lG~~~~i~~~t~~~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~-----pe----v~~~LA~ 208 (395)
T PF09295_consen 138 LNNFIKLFPKLFERGWKLGSDPEIQVPTIVNNYLVDTLLKYLSLTQRYDEAIELLEKLRERD-----PE----VAVLLAR 208 (395)
T ss_pred HHHHHHHHHHHhhcccccCCCCccCCCCCcchHHHHHHHHHHhhcccHHHHHHHHHHHHhcC-----Cc----HHHHHHH
Confidence 4557777777775 5421 111111110 1 11123466777889999998888855332 21 2334677
Q ss_pred HHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHH
Q 024043 82 CYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQ 160 (273)
Q Consensus 82 ~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~ 160 (273)
++... +..+|++.+.+++...+.. +..+..-+..+...++++.|++..++|+.+.. ....+|..++.
T Consensus 209 v~l~~~~E~~AI~ll~~aL~~~p~d------~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP------~~f~~W~~La~ 276 (395)
T PF09295_consen 209 VYLLMNEEVEAIRLLNEALKENPQD------SELLNLQAEFLLSKKKYELALEIAKKAVELSP------SEFETWYQLAE 276 (395)
T ss_pred HHHhcCcHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc------hhHHHHHHHHH
Confidence 77666 7889999999999543322 67888889999999999999999999999974 44688999999
Q ss_pred HHHHhcCHHHHHHHHHHH
Q 024043 161 YAAELEQYHKSIEIYEEI 178 (273)
Q Consensus 161 ~~~~~g~y~~A~~~~~~~ 178 (273)
+|..+|+|++|+-.+...
T Consensus 277 ~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 277 CYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHhcCCHHHHHHHHhcC
Confidence 999999999999776543
No 166
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.66 E-value=0.0071 Score=50.63 Aligned_cols=174 Identities=17% Similarity=0.121 Sum_probs=90.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHH
Q 024043 39 AANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKE 117 (273)
Q Consensus 39 a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~ 117 (273)
++.+|...+++++|.....+...+ .+...-..|+.+. +.+-|..-.++..++-.+. ++..
T Consensus 114 aa~i~~~~~~~deAl~~~~~~~~l-----------E~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~--------tLtQ 174 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLGENL-----------EAAALNVQILLKMHRFDLAEKELKKMQQIDEDA--------TLTQ 174 (299)
T ss_pred hhHHhhcCCChHHHHHHHhccchH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH--------HHHH
Confidence 455555566666655544442211 1111112233333 5555665555555443322 5556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhccCC-cccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHH
Q 024043 118 IAELYESEHNIEQTIVFFEKAADMFQNEEV-TTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHL 196 (273)
Q Consensus 118 lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~-~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (273)
+|..|... -..-+-++.|.=+|++... ...-..+++..+.|+..+|+|++|...++.++.+..+++ +.+
T Consensus 175 LA~awv~l---a~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dp-------etL 244 (299)
T KOG3081|consen 175 LAQAWVKL---ATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDP-------ETL 244 (299)
T ss_pred HHHHHHHH---hccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCH-------HHH
Confidence 66666554 0001113344444444322 222345677888888899999999999988886655543 456
Q ss_pred HHHHHHHHhcCCH-HHHHHHHHHHH------HHHHHHhhcCHhHHHHHHHhhh
Q 024043 197 LNAGICQLCKGDV-VAITNALERYQ------DIAASMDEEDIAKFTDVVKEFD 242 (273)
Q Consensus 197 ~~~gl~~l~~gd~-~~A~~~~~~~~------~ll~a~~~~d~~~~~~~~~~~~ 242 (273)
.|+..+-+..|-. +--.+.+.+.. .+++.++.. ...|.+.+.+|+
T Consensus 245 ~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~vk~~~ek-eaeFDrl~~qy~ 296 (299)
T KOG3081|consen 245 ANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFVKHLNEK-EAEFDRLVLQYD 296 (299)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHHHHHHHH-HHHHHHHHHHhc
Confidence 7776666666633 22333444332 444443222 345666666664
No 167
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.65 E-value=0.0084 Score=52.04 Aligned_cols=97 Identities=10% Similarity=0.023 Sum_probs=62.9
Q ss_pred HHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHH---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCC
Q 024043 78 DAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMA---------ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEV 147 (273)
Q Consensus 78 ~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~---------a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~ 147 (273)
+-|.++.+. .+++|..-|+..+..-...|....+ -..+......+...|++..|+++..+-+++-
T Consensus 111 QRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~----- 185 (504)
T KOG0624|consen 111 QRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ----- 185 (504)
T ss_pred HhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-----
Confidence 334445444 6778888888777655443322211 1223333333344588888888888888774
Q ss_pred cccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 024043 148 TTSANQCKQKVAQYAAELEQYHKSIEIYEEIAR 180 (273)
Q Consensus 148 ~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~ 180 (273)
.+.+..+..-+.+|+..|++..||.-++.+..
T Consensus 186 -~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~ask 217 (504)
T KOG0624|consen 186 -PWDASLRQARAKCYIAEGEPKKAIHDLKQASK 217 (504)
T ss_pred -cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 35566777888999999999999998887753
No 168
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.64 E-value=0.0015 Score=61.59 Aligned_cols=124 Identities=18% Similarity=0.119 Sum_probs=98.7
Q ss_pred HHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHH
Q 024043 78 DAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQ 156 (273)
Q Consensus 78 ~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~ 156 (273)
.++..+... ..++|..|..+|..++ ...+..++..|.++...|...+|.+.|.-|+.+-+.. ..++.
T Consensus 655 laa~~~~~~~~~~~a~~CL~Ea~~~~------~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~h------v~s~~ 722 (799)
T KOG4162|consen 655 LAADLFLLSGNDDEARSCLLEASKID------PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDH------VPSMT 722 (799)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhcc------hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCC------cHHHH
Confidence 445555555 6677888888887766 3456789999999999999999999999999886432 36788
Q ss_pred HHHHHHHHhcCHHHHHH--HHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043 157 KVAQYAAELEQYHKSIE--IYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ 220 (273)
Q Consensus 157 ~~a~~~~~~g~y~~A~~--~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~ 220 (273)
.+|.++.+.|+..-|.. ++..++...+. ..++|+.+|.+.-..||..+|.+||+...
T Consensus 723 Ala~~lle~G~~~la~~~~~L~dalr~dp~-------n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~ 781 (799)
T KOG4162|consen 723 ALAELLLELGSPRLAEKRSLLSDALRLDPL-------NHEAWYYLGEVFKKLGDSKQAAECFQAAL 781 (799)
T ss_pred HHHHHHHHhCCcchHHHHHHHHHHHhhCCC-------CHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 99999999998877776 77777654433 34688999999999999999999998764
No 169
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.60 E-value=0.0047 Score=45.28 Aligned_cols=109 Identities=12% Similarity=0.114 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHhcc---CHHHHHHHHHHHHHHHHhcCC---hh---HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 024043 71 EAAQAYVDAAHCYKKT---SSNEAISCLEQAVNMFCDIGR---LS---MAARYYKEIAELYESEHNIEQTIVFFEKAADM 141 (273)
Q Consensus 71 ~aa~~~~~~~~~~~~~---~~~eA~~~~~~Al~~~~~~g~---~~---~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~ 141 (273)
..+.+|..++..-++. -|++|...|++|.++.+..-. ++ --|-|+..++..+..+|+|++++....+|+-+
T Consensus 5 eVa~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~Y 84 (144)
T PF12968_consen 5 EVAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRY 84 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 4455666666655544 788888888888888765421 11 23778999999999999999999999999999
Q ss_pred HhccCCc-ccHH----HHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 024043 142 FQNEEVT-TSAN----QCKQKVAQYAAELEQYHKSIEIYEEIA 179 (273)
Q Consensus 142 ~~~~~~~-~~~~----~~~~~~a~~~~~~g~y~~A~~~~~~~~ 179 (273)
|..-|.. .... .+-.+-|..+..+|++++|+..|+.+.
T Consensus 85 FNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ag 127 (144)
T PF12968_consen 85 FNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAG 127 (144)
T ss_dssp HHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 9765542 2222 223445667788999999999999986
No 170
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.59 E-value=0.0017 Score=53.52 Aligned_cols=101 Identities=14% Similarity=0.127 Sum_probs=75.3
Q ss_pred HcCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhc-------CChhHHHHHH
Q 024043 45 LAKSWDKAGATYVKLANCHLKLE-SKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI-------GRLSMAARYY 115 (273)
Q Consensus 45 ~~~~~~~A~~~~~~a~~~~~~~~-~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~-------g~~~~~a~~l 115 (273)
....+++|++.|..|+-++.-.+ .+...|..+..++-+|+.. +.+....++++|++.|.+. +.......++
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 34467777777777777776444 5667778888888888877 6666666666666666542 3455668899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 024043 116 KEIAELYESEHNIEQTIVFFEKAADMFQNE 145 (273)
Q Consensus 116 ~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~ 145 (273)
.-+|.+....|++++|+.+|.+.+..-...
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 999999999999999999999988765443
No 171
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.58 E-value=0.0017 Score=61.05 Aligned_cols=116 Identities=9% Similarity=0.028 Sum_probs=91.4
Q ss_pred cCHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHh
Q 024043 86 TSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAEL 165 (273)
Q Consensus 86 ~~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~ 165 (273)
.++.++..+++.+++++.-. -.+|...|-+..+++++..|+++|.+.+.+-. ..+..|++++..|...
T Consensus 499 ~~fs~~~~hle~sl~~nplq------~~~wf~~G~~ALqlek~q~av~aF~rcvtL~P------d~~eaWnNls~ayi~~ 566 (777)
T KOG1128|consen 499 KDFSEADKHLERSLEINPLQ------LGTWFGLGCAALQLEKEQAAVKAFHRCVTLEP------DNAEAWNNLSTAYIRL 566 (777)
T ss_pred hhHHHHHHHHHHHhhcCccc------hhHHHhccHHHHHHhhhHHHHHHHHHHhhcCC------CchhhhhhhhHHHHHH
Confidence 38999999999999987533 34899999999999999999999999887743 2347899999999999
Q ss_pred cCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043 166 EQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ 220 (273)
Q Consensus 166 g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~ 220 (273)
|+-.+|...+.+++.-..+ .-..+-|-.++....|..++|.+++.+-.
T Consensus 567 ~~k~ra~~~l~EAlKcn~~-------~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 567 KKKKRAFRKLKEALKCNYQ-------HWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred hhhHHHHHHHHHHhhcCCC-------CCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 9999999999999743322 22344455566667788888888877754
No 172
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.58 E-value=0.0041 Score=49.96 Aligned_cols=103 Identities=17% Similarity=0.162 Sum_probs=75.2
Q ss_pred HHHHHHHHH-hccCHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHH
Q 024043 75 AYVDAAHCY-KKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQ 153 (273)
Q Consensus 75 ~~~~~~~~~-~~~~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~ 153 (273)
.+-.-|+-+ ...+|.+|..-|..|+++...... .....+|.+-|-++.+++..+.|+.-+.+|+++... -..
T Consensus 97 ~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~-e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt------y~k 169 (271)
T KOG4234|consen 97 SLKKEGNELFKNGDYEEANSKYQEALESCPSTST-EERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT------YEK 169 (271)
T ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH-HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch------hHH
Confidence 333344433 344888888888888888766543 455667888888888888888888888888888542 235
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhc
Q 024043 154 CKQKVAQYAAELEQYHKSIEIYEEIARQSLN 184 (273)
Q Consensus 154 ~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~ 184 (273)
++.+.|.+|.++.+|++|++-|.++....++
T Consensus 170 Al~RRAeayek~ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 170 ALERRAEAYEKMEKYEEALEDYKKILESDPS 200 (271)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhCcc
Confidence 6777788888888888888888888654443
No 173
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.57 E-value=0.00048 Score=61.87 Aligned_cols=68 Identities=21% Similarity=0.168 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHH
Q 024043 31 DAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNM 101 (273)
Q Consensus 31 ~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~ 101 (273)
.-.+.+...|..|...|+|++|+.+|++|+++ ..+...+..++.++|.||..+ ++++|+.++++|+++
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL---~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL---NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34678888999999999999999999999987 444444457899999999888 999999999999997
No 174
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.56 E-value=0.0034 Score=56.85 Aligned_cols=172 Identities=15% Similarity=0.167 Sum_probs=102.5
Q ss_pred HHHhccCHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc-C-------------
Q 024043 81 HCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE-E------------- 146 (273)
Q Consensus 81 ~~~~~~~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~-~------------- 146 (273)
.+.++.++..-+++-++|++++...-+ +|.-+++= ......+|.++|++|++.-+.. +
T Consensus 177 ~AWRERnp~aRIkaA~eALei~pdCAd------AYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e 248 (539)
T PF04184_consen 177 KAWRERNPQARIKAAKEALEINPDCAD------AYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWE 248 (539)
T ss_pred HHHhcCCHHHHHHHHHHHHHhhhhhhH------HHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhh
Confidence 344455788888888888888765533 44333321 1134677778888877765431 0
Q ss_pred -----CcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH-
Q 024043 147 -----VTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ- 220 (273)
Q Consensus 147 -----~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~- 220 (273)
+..-...+..++|.+..++|+.++|+++|+..+...+.. +.-....++..++|..+.+.+++..+.+|.
T Consensus 249 ~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~-----~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 249 AWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNL-----DNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCcc-----chhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 000113455778888889999999999999887543321 112244566778888888888888888887
Q ss_pred -------------HHHHHHhhcCH---h---------HHHHHHHhhhccCCCchhHHHHHHHHHHhcccc
Q 024043 221 -------------DIAASMDEEDI---A---------KFTDVVKEFDSMTPLDPWKTTLLLRVKEKLKAK 265 (273)
Q Consensus 221 -------------~ll~a~~~~d~---~---------~~~~~~~~~~~~~~ld~~~~~~l~~~~~~~~~~ 265 (273)
.|+++-..+|. + .-..++.-....-..+|..-+-|+..|..+.|+
T Consensus 324 i~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~LilPP 393 (539)
T PF04184_consen 324 ISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKSLILPP 393 (539)
T ss_pred ccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCCCCCCh
Confidence 34443323321 0 111122222223335666677888888776653
No 175
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.56 E-value=0.0022 Score=59.70 Aligned_cols=147 Identities=14% Similarity=0.132 Sum_probs=108.0
Q ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcC
Q 024043 48 SWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEH 126 (273)
Q Consensus 48 ~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g 126 (273)
.++.|...|.+|-. ..+..+++..-+.+-+.+ ..++|+.++++++..|..... .+..+|++++..+
T Consensus 633 e~eraR~llakar~-------~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~K------l~lmlGQi~e~~~ 699 (913)
T KOG0495|consen 633 ELERARDLLAKARS-------ISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHK------LWLMLGQIEEQME 699 (913)
T ss_pred cHHHHHHHHHHHhc-------cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHH------HHHHHhHHHHHHH
Confidence 44544444444432 344566777777776666 889999999999999886654 8999999999999
Q ss_pred CHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhc
Q 024043 127 NIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCK 206 (273)
Q Consensus 127 ~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~ 206 (273)
+.+.|.+.|..-+.... ...-.|..++.+-.+.|...+|..+++++..+.+++. ..++...-.-+..
T Consensus 700 ~ie~aR~aY~~G~k~cP------~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~-------~lwle~Ir~ElR~ 766 (913)
T KOG0495|consen 700 NIEMAREAYLQGTKKCP------NSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNA-------LLWLESIRMELRA 766 (913)
T ss_pred HHHHHHHHHHhccccCC------CCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcc-------hhHHHHHHHHHHc
Confidence 99999999976554432 3345688899999999999999999999976666553 2344455556788
Q ss_pred CCHHHHHHHHHHHH
Q 024043 207 GDVVAITNALERYQ 220 (273)
Q Consensus 207 gd~~~A~~~~~~~~ 220 (273)
|....|.....+..
T Consensus 767 gn~~~a~~lmakAL 780 (913)
T KOG0495|consen 767 GNKEQAELLMAKAL 780 (913)
T ss_pred CCHHHHHHHHHHHH
Confidence 98888877666543
No 176
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.55 E-value=0.00011 Score=48.61 Aligned_cols=55 Identities=20% Similarity=0.307 Sum_probs=45.7
Q ss_pred hcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhc
Q 024043 124 SEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLN 184 (273)
Q Consensus 124 ~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~ 184 (273)
..|++++|+..|++++..++.. ..++..+|.++...|++++|...++++....++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDN------PEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTS------HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred hccCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 4599999999999999987643 467889999999999999999999998754444
No 177
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.53 E-value=0.006 Score=57.70 Aligned_cols=112 Identities=23% Similarity=0.355 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH------HHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHH-----------
Q 024043 34 DLFDKAANSFKLAKSWDKAGATYVK------LANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCL----------- 95 (273)
Q Consensus 34 ~~~~~a~~~~~~~~~~~~A~~~~~~------a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~----------- 95 (273)
++|.+||.+|....++++|++||.+ |+++.+ ..-|......-..-|.-.... +++.|+.+|
T Consensus 662 elydkagdlfeki~d~dkale~fkkgdaf~kaielar-fafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaie 740 (1636)
T KOG3616|consen 662 ELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELAR-FAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIE 740 (1636)
T ss_pred HHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHH-hhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHH
Confidence 5777888888888899999887654 444432 111222222222222222222 344444433
Q ss_pred --------HHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHH------HHHHHhccC
Q 024043 96 --------EQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEK------AADMFQNEE 146 (273)
Q Consensus 96 --------~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~------Al~~~~~~~ 146 (273)
.+|+.+.....|...+...|-.++..|...|+|+.|-+.|.+ |+.+|.+.+
T Consensus 741 aai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k~~ 805 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADLFKDAIDMYGKAG 805 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcchhHHHHHHHhccc
Confidence 344555555555556666777888888888999988887754 677776655
No 178
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.50 E-value=0.00024 Score=40.03 Aligned_cols=32 Identities=16% Similarity=0.366 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 024043 112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQ 143 (273)
Q Consensus 112 a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~ 143 (273)
|.++.++|.+|..+|++++|+.+|++|+++.+
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 45777888888888888888888888887754
No 179
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.48 E-value=0.0033 Score=56.59 Aligned_cols=130 Identities=14% Similarity=0.058 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCccc
Q 024043 71 EAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTS 150 (273)
Q Consensus 71 ~aa~~~~~~~~~~~~~~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~ 150 (273)
+.+.-|-.+-..|...++++|...++.-+.-.+ ++ ...+.-.+.++...+++.+|.+.+++|+.+....
T Consensus 305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P--~N----~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~----- 373 (484)
T COG4783 305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAAQP--DN----PYYLELAGDILLEANKAKEAIERLKKALALDPNS----- 373 (484)
T ss_pred chHHHHHHHHHHHHhcccchHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc-----
Confidence 334444444444555577777777777443333 22 3467778999999999999999999999987543
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 024043 151 ANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERY 219 (273)
Q Consensus 151 ~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~ 219 (273)
.-...++|..+.+.|++.+|+..+.+.....+.++ ..|..++-+|-.+||..++..+..+.
T Consensus 374 -~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp-------~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 374 -PLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDP-------NGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred -cHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCc-------hHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 35578999999999999999999999876666654 24455667778888888887777664
No 180
>PRK15331 chaperone protein SicA; Provisional
Probab=97.47 E-value=0.0012 Score=51.47 Aligned_cols=94 Identities=13% Similarity=0.135 Sum_probs=68.5
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHH
Q 024043 75 AYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQC 154 (273)
Q Consensus 75 ~~~~~~~~~~~~~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~ 154 (273)
.|..+-+.|..+++++|...|+-...+-. .+ .+.+..+|.++...++|++|+..|..|..+-..+..|
T Consensus 40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~--~n----~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p------ 107 (165)
T PRK15331 40 LYAHAYEFYNQGRLDEAETFFRFLCIYDF--YN----PDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRP------ 107 (165)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCc--Cc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCc------
Confidence 34444455555588888888775544221 11 3478899999999999999999999988876544333
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH
Q 024043 155 KQKVAQYAAELEQYHKSIEIYEEIAR 180 (273)
Q Consensus 155 ~~~~a~~~~~~g~y~~A~~~~~~~~~ 180 (273)
....|.|+..+|+...|..+|+.++.
T Consensus 108 ~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 108 VFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred cchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 55678899999999999999988865
No 181
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=97.47 E-value=0.0028 Score=45.00 Aligned_cols=80 Identities=16% Similarity=0.142 Sum_probs=67.0
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 024043 44 KLAKSWDKAGATYVKLANCHLKLESKH---EAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIA 119 (273)
Q Consensus 44 ~~~~~~~~A~~~~~~a~~~~~~~~~~~---~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg 119 (273)
...|+|..|.+.+.+..+.....++.. ....++.+++.++... ++++|+..+++|+.+.++.+|....+.++.-+.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~~~ 88 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSWLA 88 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 346889999999999888887666544 5666677888888777 999999999999999999999999999988887
Q ss_pred HHHH
Q 024043 120 ELYE 123 (273)
Q Consensus 120 ~~~~ 123 (273)
.+..
T Consensus 89 ~l~~ 92 (94)
T PF12862_consen 89 NLLK 92 (94)
T ss_pred HHhh
Confidence 7654
No 182
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=97.41 E-value=0.037 Score=44.19 Aligned_cols=128 Identities=12% Similarity=0.034 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCH
Q 024043 50 DKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNI 128 (273)
Q Consensus 50 ~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~ 128 (273)
.+-++-++.-++-++......+...++..+|..|.+. +.++|+++|.++.+.. -.+......+.++-.+....+++
T Consensus 13 ~~~~~~Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~---~~~~~~id~~l~~irv~i~~~d~ 89 (177)
T PF10602_consen 13 AEELEKLEAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYC---TSPGHKIDMCLNVIRVAIFFGDW 89 (177)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc---CCHHHHHHHHHHHHHHHHHhCCH
Confidence 3444555555566665666677788899999999887 9999999999977753 33444555555566666666999
Q ss_pred HHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 024043 129 EQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIAR 180 (273)
Q Consensus 129 ~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~ 180 (273)
.....+..+|-.+.+..++....+....--|..+...++|.+|.+.|-.+..
T Consensus 90 ~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 90 SHVEKYIEKAESLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCc
Confidence 9999999999999988776444444455556667778999999999988853
No 183
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.39 E-value=0.0033 Score=56.46 Aligned_cols=110 Identities=17% Similarity=0.149 Sum_probs=87.2
Q ss_pred CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhc
Q 024043 87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE 166 (273)
Q Consensus 87 ~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g 166 (273)
++++|++.+++-.... + .+...++.++...++..+|++...+++.....+ ...+..-+..+...+
T Consensus 184 ~~~~ai~lle~L~~~~-----p----ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d------~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 184 RYDEAIELLEKLRERD-----P----EVAVLLARVYLLMNEEVEAIRLLNEALKENPQD------SELLNLQAEFLLSKK 248 (395)
T ss_pred cHHHHHHHHHHHHhcC-----C----cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcC
Confidence 7788888777754332 2 245568888888899999999999999544322 677888899999999
Q ss_pred CHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHH
Q 024043 167 QYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALER 218 (273)
Q Consensus 167 ~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~ 218 (273)
+|+.|+++.+++....+.+ ...|+.++.||...||++.|.-+++-
T Consensus 249 ~~~lAL~iAk~av~lsP~~-------f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 249 KYELALEIAKKAVELSPSE-------FETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred CHHHHHHHHHHHHHhCchh-------HHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 9999999999998655543 34678899999999999999888874
No 184
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.37 E-value=0.024 Score=52.37 Aligned_cols=73 Identities=18% Similarity=0.227 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc----cC-----CcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Q 024043 113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQN----EE-----VTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSL 183 (273)
Q Consensus 113 ~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~----~~-----~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~ 183 (273)
..+.|.+-++...|+|.+|++.+++|+.+-++ .. -....+.+..+++-++..+|+-.+|.++|...+....
T Consensus 176 el~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~ 255 (652)
T KOG2376|consen 176 ELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNP 255 (652)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcC
Confidence 45778888888889999999999999666542 11 1234567889999999999999999999999875544
Q ss_pred cc
Q 024043 184 NN 185 (273)
Q Consensus 184 ~~ 185 (273)
-+
T Consensus 256 ~D 257 (652)
T KOG2376|consen 256 AD 257 (652)
T ss_pred CC
Confidence 33
No 185
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.35 E-value=0.00052 Score=38.49 Aligned_cols=32 Identities=28% Similarity=0.385 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 024043 112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQ 143 (273)
Q Consensus 112 a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~ 143 (273)
|.++..+|.++..+|++++|+++|++|+.+.+
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 45677777777777777777777777777654
No 186
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=97.32 E-value=0.0058 Score=51.55 Aligned_cols=92 Identities=22% Similarity=0.227 Sum_probs=83.8
Q ss_pred CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhc
Q 024043 87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE 166 (273)
Q Consensus 87 ~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g 166 (273)
.....++++.+|.+.|...+..+....+...+|.-|...|++++|+.+|+.+...|+.+|...-...++..+-.|...+|
T Consensus 153 hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~ 232 (247)
T PF11817_consen 153 HSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG 232 (247)
T ss_pred hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 44678999999999999999999999999999999999999999999999999999999998888899999999999999
Q ss_pred CHHHHHHHHHHH
Q 024043 167 QYHKSIEIYEEI 178 (273)
Q Consensus 167 ~y~~A~~~~~~~ 178 (273)
+.+..+.+.-+.
T Consensus 233 ~~~~~l~~~leL 244 (247)
T PF11817_consen 233 DVEDYLTTSLEL 244 (247)
T ss_pred CHHHHHHHHHHH
Confidence 998888765443
No 187
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.31 E-value=0.094 Score=47.65 Aligned_cols=186 Identities=16% Similarity=0.045 Sum_probs=125.6
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHhcc--CHHHHHHHHHHHHHHHH
Q 024043 27 SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESK-HEAAQAYVDAAHCYKKT--SSNEAISCLEQAVNMFC 103 (273)
Q Consensus 27 ~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-~~aa~~~~~~~~~~~~~--~~~eA~~~~~~Al~~~~ 103 (273)
|+--+|..-..-...+|...++.+.|....++|..+...+++. ...-.++.-++.+|... .+..+....++|+++..
T Consensus 41 s~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq 120 (629)
T KOG2300|consen 41 SFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQ 120 (629)
T ss_pred hHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhc
Confidence 6667788777777788999999999999999999999999976 55556667778888655 67788889999999864
Q ss_pred hcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHH------HHHHHhcCHH---HHHHH
Q 024043 104 DIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVA------QYAAELEQYH---KSIEI 174 (273)
Q Consensus 104 ~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a------~~~~~~g~y~---~A~~~ 174 (273)
+.+--..+.+..+++++....++.-|++...--. ...++. ...+.++. .++...-+.. ++...
T Consensus 121 --~~p~wsckllfQLaql~~idkD~~sA~elLavga----~sAd~~--~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~ 192 (629)
T KOG2300|consen 121 --SVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGA----ESADHI--CFPYLRMLFTLSMLMLLIMERDDYDVEKLLQR 192 (629)
T ss_pred --CCchhhHHHHHHHHHHHhhhccchhHHHHHhccc----cccchh--hhHHHHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 5567888999999999999999999998842211 111211 12222222 2222222333 33344
Q ss_pred HHHHHHHHhccchhhhchhhHHHHHHHH-HHhcCCHHHHHHHHHHHH
Q 024043 175 YEEIARQSLNNNLLKYGVKGHLLNAGIC-QLCKGDVVAITNALERYQ 220 (273)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~gl~-~l~~gd~~~A~~~~~~~~ 220 (273)
..++.....+++..+-..+..|+++-++ |+..|....++.++++.+
T Consensus 193 ~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ 239 (629)
T KOG2300|consen 193 CGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQ 239 (629)
T ss_pred HHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHH
Confidence 4444344444443333344555566555 577888888888887765
No 188
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.27 E-value=0.19 Score=48.14 Aligned_cols=164 Identities=15% Similarity=0.086 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-c-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCC
Q 024043 50 DKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKK-T-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHN 127 (273)
Q Consensus 50 ~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~-~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~ 127 (273)
.-|+.|++-+.. ...=.+...+.++.++|.++.. . ++++|..++.+++.+..+.+-.+.--.+..-++.++...+.
T Consensus 38 ~~ai~CL~~~~~--~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~ 115 (608)
T PF10345_consen 38 ATAIKCLEAVLK--QFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNP 115 (608)
T ss_pred HHHHHHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCH
Confidence 345555555443 1112577888999999999864 4 99999999999999998866555556667777999999665
Q ss_pred HHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH--hccchhhhchhhHHHHHHHHHHh
Q 024043 128 IEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQS--LNNNLLKYGVKGHLLNAGICQLC 205 (273)
Q Consensus 128 ~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~gl~~l~ 205 (273)
.. |.....++++.++..+...+.-.+..--.......+++..|++.++...... .+++.. ..-..+--+++++.
T Consensus 116 ~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~---~v~~~l~~~~l~l~ 191 (608)
T PF10345_consen 116 KA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV---FVLASLSEALLHLR 191 (608)
T ss_pred HH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH---HHHHHHHHHHHHhc
Confidence 55 9999999999999866543332222211333333489999999999986443 344211 11111222566777
Q ss_pred cCCHHHHHHHHHHH
Q 024043 206 KGDVVAITNALERY 219 (273)
Q Consensus 206 ~gd~~~A~~~~~~~ 219 (273)
.+....+.+.+++.
T Consensus 192 ~~~~~d~~~~l~~~ 205 (608)
T PF10345_consen 192 RGSPDDVLELLQRA 205 (608)
T ss_pred CCCchhHHHHHHHH
Confidence 77555555555543
No 189
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.24 E-value=0.013 Score=42.96 Aligned_cols=101 Identities=15% Similarity=0.127 Sum_probs=73.5
Q ss_pred HcCCHHHHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHH-----H
Q 024043 45 LAKSWDKAGATYVKLANCHLKLES------KHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMA-----A 112 (273)
Q Consensus 45 ~~~~~~~A~~~~~~a~~~~~~~~~------~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~-----a 112 (273)
..|.|++|...+.+|.++.+.+.. ..--+-++.-++..+..+ +|++++..-.+|+..|.+.|...+. .
T Consensus 21 ~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWI 100 (144)
T PF12968_consen 21 QDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWI 100 (144)
T ss_dssp HHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHH
Confidence 356788888888888888875542 223566777788888777 9999999999999999887764332 3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 024043 113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQNE 145 (273)
Q Consensus 113 ~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~ 145 (273)
.+..+-+..+..+|++++|+..|+.|.++..+-
T Consensus 101 aaVfsra~Al~~~Gr~~eA~~~fr~agEMiaER 133 (144)
T PF12968_consen 101 AAVFSRAVALEGLGRKEEALKEFRMAGEMIAER 133 (144)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Confidence 344567788899999999999999999998653
No 190
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.22 E-value=0.021 Score=53.33 Aligned_cols=181 Identities=12% Similarity=0.098 Sum_probs=97.8
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 024043 43 FKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAEL 121 (273)
Q Consensus 43 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~ 121 (273)
+....-++++..+|++.+.++ +..+..+.-..|..-..--..+ .++.|...|++|++ |-+...++.+.-+=-.
T Consensus 521 LEeh~yfeesFk~YErgI~LF-k~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-----~Cpp~~aKtiyLlYA~ 594 (835)
T KOG2047|consen 521 LEEHKYFEESFKAYERGISLF-KWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-----GCPPEHAKTIYLLYAK 594 (835)
T ss_pred HHhhHHHHHHHHHHHcCCccC-CCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHH
Confidence 334445677777777777776 3334444444443322222222 88999999999997 3345555555544444
Q ss_pred HHh-cCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHH
Q 024043 122 YES-EHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAG 200 (273)
Q Consensus 122 ~~~-~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 200 (273)
+++ -|-...|+..|++|..-.........-.-+..+.+.+|.- ..-.++|++++...+++ ..++..++-.
T Consensus 595 lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv----~~TR~iYekaIe~Lp~~-----~~r~mclrFA 665 (835)
T KOG2047|consen 595 LEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGV----PRTREIYEKAIESLPDS-----KAREMCLRFA 665 (835)
T ss_pred HHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCC----cccHHHHHHHHHhCChH-----HHHHHHHHHH
Confidence 433 3777777777777654433322222222233344444322 23345666666543333 2334444444
Q ss_pred HHHHhcCCHHHHHHHHHHHH---------------HHHHHHhhcCHhHHHHHHH
Q 024043 201 ICQLCKGDVVAITNALERYQ---------------DIAASMDEEDIAKFTDVVK 239 (273)
Q Consensus 201 l~~l~~gd~~~A~~~~~~~~---------------~ll~a~~~~d~~~~~~~~~ 239 (273)
..-...|..++|+..+.... ..++ +.+||.+.+.+-+.
T Consensus 666 dlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FE-vrHGnedT~keMLR 718 (835)
T KOG2047|consen 666 DLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFE-VRHGNEDTYKEMLR 718 (835)
T ss_pred HHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHH-HhcCCHHHHHHHHH
Confidence 44556778888877666433 2232 56777777666553
No 191
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.20 E-value=0.012 Score=54.80 Aligned_cols=99 Identities=13% Similarity=0.134 Sum_probs=77.0
Q ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchh
Q 024043 109 SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLL 188 (273)
Q Consensus 109 ~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~ 188 (273)
...-.++.-++..|...|++++|+++.++|++.- +...+.+..-|.++-..|++.+|.+.++.+-.....++
T Consensus 191 ~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht------Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DR-- 262 (517)
T PF12569_consen 191 STLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT------PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADR-- 262 (517)
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhH--
Confidence 3345688999999999999999999999999884 34468899999999999999999999999854333331
Q ss_pred hhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043 189 KYGVKGHLLNAGICQLCKGDVVAITNALERYQ 220 (273)
Q Consensus 189 ~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~ 220 (273)
+ ...++.-.++..|+++.|...+..|.
T Consensus 263 -y----iNsK~aKy~LRa~~~e~A~~~~~~Ft 289 (517)
T PF12569_consen 263 -Y----INSKCAKYLLRAGRIEEAEKTASLFT 289 (517)
T ss_pred -H----HHHHHHHHHHHCCCHHHHHHHHHhhc
Confidence 1 22234555678888988888877665
No 192
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.18 E-value=0.0012 Score=44.11 Aligned_cols=58 Identities=19% Similarity=0.218 Sum_probs=47.2
Q ss_pred HHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 024043 81 HCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQN 144 (273)
Q Consensus 81 ~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~ 144 (273)
.+|... ++++|++++++++.+.+.. ...+...|.++..+|++.+|+..++++++..+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDD------PELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCccc------chhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 455555 8999999999998886653 458888999999999999999999999977653
No 193
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.18 E-value=0.0012 Score=37.06 Aligned_cols=32 Identities=28% Similarity=0.548 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 024043 112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQ 143 (273)
Q Consensus 112 a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~ 143 (273)
|+++..+|.+|..+|++++|+.+|++++++.+
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 45778888888888888888888888888765
No 194
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.16 E-value=0.035 Score=42.47 Aligned_cols=99 Identities=12% Similarity=0.126 Sum_probs=65.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhccC-----C-c----------ccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 024043 119 AELYESEHNIEQTIVFFEKAADMFQNEE-----V-T----------TSANQCKQKVAQYAAELEQYHKSIEIYEEIARQS 182 (273)
Q Consensus 119 g~~~~~~g~~~~A~~~y~~Al~~~~~~~-----~-~----------~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~ 182 (273)
|......|+.+.++..+++|+.+|...- . + .....++..++..+...|++++|+..+++++...
T Consensus 13 a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d 92 (146)
T PF03704_consen 13 ARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALD 92 (146)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Confidence 4444445777777778888877776421 1 0 1112566677778888999999999999998665
Q ss_pred hccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 024043 183 LNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDIAA 224 (273)
Q Consensus 183 ~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~ll~ 224 (273)
+-+. ..+..+..++...|+...|.+.++++...+.
T Consensus 93 P~~E-------~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~ 127 (146)
T PF03704_consen 93 PYDE-------EAYRLLMRALAAQGRRAEALRVYERYRRRLR 127 (146)
T ss_dssp TT-H-------HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred CCCH-------HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 5432 2345567788999999999999999986554
No 195
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.14 E-value=0.12 Score=43.30 Aligned_cols=163 Identities=15% Similarity=0.146 Sum_probs=115.3
Q ss_pred hHHHHHHHHHHhhccccCCCCCHHHHHHHHHHH-----------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCH
Q 024043 7 RAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKA-----------------ANSFKLAKSWDKAGATYVKLANCHLKLESK 69 (273)
Q Consensus 7 ~a~~l~~~Aek~~k~~~~~~~~~~~A~~~~~~a-----------------~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 69 (273)
.|.+|..++.+.|. +|+|++|.+.|+.. +-.+...+++++|+....+-..++...
T Consensus 33 p~~~LY~~g~~~L~-----~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~--- 104 (254)
T COG4105 33 PASELYNEGLTELQ-----KGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTH--- 104 (254)
T ss_pred CHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC---
Confidence 67888999988887 35888998888865 456777899999999988888776543
Q ss_pred HHHHHHHHHHHHHHhcc------CH---HHHHHHHHHHHHHHHhcCCh-----------hHHHHHHHHHHHHHHhcCCHH
Q 024043 70 HEAAQAYVDAAHCYKKT------SS---NEAISCLEQAVNMFCDIGRL-----------SMAARYYKEIAELYESEHNIE 129 (273)
Q Consensus 70 ~~aa~~~~~~~~~~~~~------~~---~eA~~~~~~Al~~~~~~g~~-----------~~~a~~l~~lg~~~~~~g~~~ 129 (273)
..+.-++.-.|.++... |+ .+|+.-++.-+.-|+...-. ...|.--..+|..|.+.|.+.
T Consensus 105 ~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~ 184 (254)
T COG4105 105 PNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYV 184 (254)
T ss_pred CChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChH
Confidence 34556666667666544 33 34555555555554433211 123455667889999999999
Q ss_pred HHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 024043 130 QTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIAR 180 (273)
Q Consensus 130 ~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~ 180 (273)
.|+..+++.++-|+... .....+-.+...|..+|-.++|-..-.=+..
T Consensus 185 AA~nR~~~v~e~y~~t~---~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 185 AAINRFEEVLENYPDTS---AVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHHHHhcccccc---chHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 99999999998887654 3446788888899999988888775444333
No 196
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.12 E-value=0.028 Score=48.00 Aligned_cols=161 Identities=8% Similarity=0.072 Sum_probs=89.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChh-HHHHHHHHHHH---
Q 024043 46 AKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLS-MAARYYKEIAE--- 120 (273)
Q Consensus 46 ~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~-~~a~~l~~lg~--- 120 (273)
-.+|.+|+++...-.+...+ .. ..+.-+|.||... ++..|.+||++-..++++..... -.|..+.+.+.
T Consensus 23 d~ry~DaI~~l~s~~Er~p~----~r--AgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~AD 96 (459)
T KOG4340|consen 23 DARYADAIQLLGSELERSPR----SR--AGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYAD 96 (459)
T ss_pred HhhHHHHHHHHHHHHhcCcc----ch--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHH
Confidence 34567777665544333211 11 2345577787766 78888888887766555432211 11222222110
Q ss_pred ---HHHhcCC---HHHHHHHHHHHHHHHhcc---------CCc-ccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhc
Q 024043 121 ---LYESEHN---IEQTIVFFEKAADMFQNE---------EVT-TSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLN 184 (273)
Q Consensus 121 ---~~~~~g~---~~~A~~~y~~Al~~~~~~---------~~~-~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~ 184 (273)
+....++ .-.-.-..+.|+...+.+ ..+ .+.+.+.++.|-+..+.|+|+.|+.-|+.+....--
T Consensus 97 ALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGy 176 (459)
T KOG4340|consen 97 ALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGY 176 (459)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCC
Confidence 1111122 111112233344333221 011 244577888888999999999999999998643222
Q ss_pred cchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 024043 185 NNLLKYGVKGHLLNAGICQLCKGDVVAITNALERY 219 (273)
Q Consensus 185 ~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~ 219 (273)
++ ..-+++.+||...|++..|.+...+-
T Consensus 177 qp-------llAYniALaHy~~~qyasALk~iSEI 204 (459)
T KOG4340|consen 177 QP-------LLAYNLALAHYSSRQYASALKHISEI 204 (459)
T ss_pred Cc-------hhHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 11 13367889999999999998877654
No 197
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.09 E-value=0.096 Score=41.23 Aligned_cols=166 Identities=17% Similarity=0.138 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHH
Q 024043 35 LFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAAR 113 (273)
Q Consensus 35 ~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~ 113 (273)
.+...+..+...+.+..+...+...... .........+...+.++... ++.+++..+.+++....... .
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-- 130 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALEL----ELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD----L-- 130 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhh----hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc----h--
Confidence 3444566677777777777777777664 12233345566666666555 67777777777766544331 1
Q ss_pred HHHHHHH-HHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhch
Q 024043 114 YYKEIAE-LYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGV 192 (273)
Q Consensus 114 ~l~~lg~-~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~ 192 (273)
.....+. ++...|+++.|+..|.+++..... ...........+..+...+++++|+..+.++....... .
T Consensus 131 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~------~ 201 (291)
T COG0457 131 AEALLALGALYELGDYEEALELYEKALELDPE---LNELAEALLALGALLEALGRYEEALELLEKALKLNPDD------D 201 (291)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc------c
Confidence 2222222 677778899999999888552211 11233445555666777888888888888886443331 1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 024043 193 KGHLLNAGICQLCKGDVVAITNALERY 219 (273)
Q Consensus 193 ~~~~~~~gl~~l~~gd~~~A~~~~~~~ 219 (273)
...+..++.++...+++..|...+...
T Consensus 202 ~~~~~~~~~~~~~~~~~~~a~~~~~~~ 228 (291)
T COG0457 202 AEALLNLGLLYLKLGKYEEALEYYEKA 228 (291)
T ss_pred hHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 223455666777777777776666654
No 198
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.029 Score=48.48 Aligned_cols=114 Identities=16% Similarity=0.148 Sum_probs=96.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 024043 58 KLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFE 136 (273)
Q Consensus 58 ~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~ 136 (273)
+++..-..-|++++.|..|-.=|+-|.+. +|..|+.+|.+.+. .+.+|+.--|.+|.|-+-+....|+|..|+.-..
T Consensus 66 qslK~da~E~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk--~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs 143 (390)
T KOG0551|consen 66 QSLKADAEEGEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLK--KKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCS 143 (390)
T ss_pred HHhhhccccCChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHh--hcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 33444446678999999999999988777 99999999999876 5678999999999999999999999999999999
Q ss_pred HHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 024043 137 KAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIA 179 (273)
Q Consensus 137 ~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~ 179 (273)
+|+.+-. .-..++.+-|.++..+.++.+|+...+...
T Consensus 144 ~al~~~P------~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 144 AALKLKP------THLKAYIRGAKCLLELERFAEAVNWCEEGL 180 (390)
T ss_pred HHHhcCc------chhhhhhhhhHHHHHHHHHHHHHHHHhhhh
Confidence 9987743 234678888999999999999998887764
No 199
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.05 E-value=0.0086 Score=55.29 Aligned_cols=119 Identities=18% Similarity=0.188 Sum_probs=88.8
Q ss_pred CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhc
Q 024043 87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE 166 (273)
Q Consensus 87 ~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g 166 (273)
+.+.|.+.+......|++ .+-.+...|.++...|+.++|++.|++|++.-. ..+.-..-|+..+|.++.-+.
T Consensus 248 ~~~~a~~lL~~~~~~yP~------s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~--~~~Ql~~l~~~El~w~~~~~~ 319 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRYPN------SALFLFFEGRLERLKGNLEEAIESFERAIESQS--EWKQLHHLCYFELAWCHMFQH 319 (468)
T ss_pred CHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchh--hHHhHHHHHHHHHHHHHHHHc
Confidence 345566666666655553 345788889999999999999999999994332 223444578999999999999
Q ss_pred CHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCH-------HHHHHHHHHH
Q 024043 167 QYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDV-------VAITNALERY 219 (273)
Q Consensus 167 ~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~-------~~A~~~~~~~ 219 (273)
+|++|.++|.+.... ..++..-+.+-.+.|++..|+. .+|...+.+.
T Consensus 320 ~w~~A~~~f~~L~~~------s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 320 DWEEAAEYFLRLLKE------SKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred hHHHHHHHHHHHHhc------cccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 999999999998642 2466666777789999999988 5555555543
No 200
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.05 E-value=0.048 Score=43.70 Aligned_cols=101 Identities=12% Similarity=0.069 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCccc
Q 024043 72 AAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTS 150 (273)
Q Consensus 72 aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~ 150 (273)
+.-....++..+.+. ++++|+..++.++.. ..|...-+-+-.+++.+...+|.+++|+..+. ....+..
T Consensus 88 a~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~-------t~~~~~w 157 (207)
T COG2976 88 AVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLD-------TIKEESW 157 (207)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHh-------ccccccH
Confidence 333444556666555 999999999988753 44555666777889999999999998877663 4444456
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 024043 151 ANQCKQKVAQYAAELEQYHKSIEIYEEIARQS 182 (273)
Q Consensus 151 ~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~ 182 (273)
.+......|+++...|+-.+|...|++++...
T Consensus 158 ~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 158 AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 66777888999999999999999999997654
No 201
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.04 E-value=0.12 Score=41.42 Aligned_cols=100 Identities=13% Similarity=0.052 Sum_probs=73.1
Q ss_pred HHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHH
Q 024043 76 YVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQC 154 (273)
Q Consensus 76 ~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~ 154 (273)
...+++...+. ++.||..+|++|+ .|-+...+..+..++......+++..|...+++-.+....-.+ .+.
T Consensus 92 r~rLa~al~elGr~~EA~~hy~qal-----sG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~----pd~ 162 (251)
T COG4700 92 RYRLANALAELGRYHEAVPHYQQAL-----SGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRS----PDG 162 (251)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHh-----ccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCC----CCc
Confidence 34455555555 8888999998886 4555556677888888888888888888888877666533332 244
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhc
Q 024043 155 KQKVAQYAAELEQYHKSIEIYEEIARQSLN 184 (273)
Q Consensus 155 ~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~ 184 (273)
..-+|.++..+|+|.+|...|+.++.-.+|
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ypg 192 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYYPG 192 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhCCC
Confidence 677888888899999999888888755444
No 202
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.03 E-value=0.0023 Score=42.09 Aligned_cols=50 Identities=24% Similarity=0.339 Sum_probs=41.7
Q ss_pred HHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 024043 163 AELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERY 219 (273)
Q Consensus 163 ~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~ 219 (273)
...|+|++|++.|++++...+++. ...+.++.|++..|++++|...+++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNP-------EARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSH-------HHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred hhccCHHHHHHHHHHHHHHCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 568999999999999987777653 35678899999999999999999875
No 203
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.02 E-value=0.092 Score=41.36 Aligned_cols=164 Identities=18% Similarity=0.190 Sum_probs=103.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHH
Q 024043 36 FDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARY 114 (273)
Q Consensus 36 ~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~ 114 (273)
+...+..+...+++..++..+.++....... .....+...+ ++... ++++|+.+|.+++..... .......
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~ 169 (291)
T COG0457 98 LLNLGLLLEALGKYEEALELLEKALALDPDP----DLAEALLALG-ALYELGDYEEALELYEKALELDPE---LNELAEA 169 (291)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc----chHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCC---ccchHHH
Confidence 3344555555666666666666665543222 1112222222 55555 999999999999442111 1334445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhh
Q 024043 115 YKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKG 194 (273)
Q Consensus 115 l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~ 194 (273)
+...+..+...+++++++..+.+++...... ....+..++..+...+++.+|+..+..+....... ..
T Consensus 170 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~ 237 (291)
T COG0457 170 LLALGALLEALGRYEEALELLEKALKLNPDD-----DAEALLNLGLLYLKLGKYEEALEYYEKALELDPDN-------AE 237 (291)
T ss_pred HHHhhhHHHHhcCHHHHHHHHHHHHhhCccc-----chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCccc-------HH
Confidence 5555666777799999999999999998654 34668888999999999999999999987543321 11
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 024043 195 HLLNAGICQLCKGDVVAITNALERY 219 (273)
Q Consensus 195 ~~~~~gl~~l~~gd~~~A~~~~~~~ 219 (273)
.+...+..+...|+...+...+.+.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (291)
T COG0457 238 ALYNLALLLLELGRYEEALEALEKA 262 (291)
T ss_pred HHhhHHHHHHHcCCHHHHHHHHHHH
Confidence 2333444444556676666666654
No 204
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.01 E-value=0.063 Score=43.05 Aligned_cols=107 Identities=16% Similarity=0.130 Sum_probs=79.8
Q ss_pred HhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 024043 103 CDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQS 182 (273)
Q Consensus 103 ~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~ 182 (273)
..+|...-+.-+...++..+...+++++|...++.++..-.+. ..-+-+-.++|.+...+|++++|+..+.......
T Consensus 80 ~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De---~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~ 156 (207)
T COG2976 80 QANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDE---NLKALAALRLARVQLQQKKADAALKTLDTIKEES 156 (207)
T ss_pred hhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhH---HHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc
Confidence 3455666677778888999999999999999999998654332 2334556899999999999999999987763211
Q ss_pred hccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043 183 LNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ 220 (273)
Q Consensus 183 ~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~ 220 (273)
| .......-|.+++..||..+|+..|+...
T Consensus 157 -------w-~~~~~elrGDill~kg~k~~Ar~ay~kAl 186 (207)
T COG2976 157 -------W-AAIVAELRGDILLAKGDKQEARAAYEKAL 186 (207)
T ss_pred -------H-HHHHHHHhhhHHHHcCchHHHHHHHHHHH
Confidence 1 11122234889999999999999999863
No 205
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.01 E-value=0.0017 Score=37.17 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH
Q 024043 154 CKQKVAQYAAELEQYHKSIEIYEEIA 179 (273)
Q Consensus 154 ~~~~~a~~~~~~g~y~~A~~~~~~~~ 179 (273)
++.++|.+|..+|+|++|+++|++++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47899999999999999999999975
No 206
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=97.01 E-value=0.03 Score=44.68 Aligned_cols=133 Identities=11% Similarity=0.053 Sum_probs=98.5
Q ss_pred hHHHHHHHHHHhhccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc
Q 024043 7 RAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT 86 (273)
Q Consensus 7 ~a~~l~~~Aek~~k~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~ 86 (273)
+..+-+.+=+..++.- .=+.-=++....+...|..|...|+.++|+++|.++.+- .-.+......+.+...+....
T Consensus 11 ~~~~~~~~Le~elk~~-~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~---~~~~~~~id~~l~~irv~i~~ 86 (177)
T PF10602_consen 11 KNAEELEKLEAELKDA-KSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDY---CTSPGHKIDMCLNVIRVAIFF 86 (177)
T ss_pred HHHHHHHHHHHHHHHH-HhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh---cCCHHHHHHHHHHHHHHHHHh
Confidence 4444445555555410 001222667788889999999999999999999996553 445666677777777776555
Q ss_pred -CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 024043 87 -SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQ 143 (273)
Q Consensus 87 -~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~ 143 (273)
++.....+..+|-.+....|++....+...--|..+...++|.+|.+.|-.+..-|.
T Consensus 87 ~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~~ 144 (177)
T PF10602_consen 87 GDWSHVEKYIEKAESLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTFT 144 (177)
T ss_pred CCHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCCC
Confidence 999999999999999999999888887777777777777899998888877665443
No 207
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.95 E-value=0.0024 Score=37.43 Aligned_cols=34 Identities=18% Similarity=0.333 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 024043 112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE 145 (273)
Q Consensus 112 a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~ 145 (273)
+.++.++|.+|...|++++|..++++++++.+..
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 35 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERL 35 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHH
Confidence 5678899999999999999999999999888765
No 208
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.93 E-value=0.0021 Score=36.01 Aligned_cols=32 Identities=13% Similarity=0.232 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Q 024043 152 NQCKQKVAQYAAELEQYHKSIEIYEEIARQSL 183 (273)
Q Consensus 152 ~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~ 183 (273)
+.++.++|.++..+|+|++|+..|++++...+
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 35789999999999999999999999986543
No 209
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.93 E-value=0.025 Score=52.83 Aligned_cols=116 Identities=13% Similarity=0.006 Sum_probs=78.5
Q ss_pred CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhc---C-----CHHHHHHHHHHHHHHHhccCCcccHHHHHHHH
Q 024043 87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE---H-----NIEQTIVFFEKAADMFQNEEVTTSANQCKQKV 158 (273)
Q Consensus 87 ~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~---g-----~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~ 158 (273)
++.+|+++|++|+++-... +.++..++.++... + +..++.+...+++.+-. .+.. ..++.-+
T Consensus 357 ~~~~A~~lle~Ai~ldP~~------a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~---~~~~-~~~~~al 426 (517)
T PRK10153 357 SLNKASDLLEEILKSEPDF------TYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPE---LNVL-PRIYEIL 426 (517)
T ss_pred HHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhccc---CcCC-hHHHHHH
Confidence 5789999999999886544 33444445544332 1 12334444444443311 1112 3567778
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043 159 AQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ 220 (273)
Q Consensus 159 a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~ 220 (273)
|.++...|++++|...+++++...+. ...+..+|.++...|+.++|.+.+++..
T Consensus 427 a~~~~~~g~~~~A~~~l~rAl~L~ps--------~~a~~~lG~~~~~~G~~~eA~~~~~~A~ 480 (517)
T PRK10153 427 AVQALVKGKTDEAYQAINKAIDLEMS--------WLNYVLLGKVYELKGDNRLAADAYSTAF 480 (517)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88888899999999999999764431 2356778999999999999999998864
No 210
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.92 E-value=0.21 Score=42.31 Aligned_cols=147 Identities=10% Similarity=0.099 Sum_probs=97.9
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhc
Q 024043 27 SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI 105 (273)
Q Consensus 27 ~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~ 105 (273)
||.+---++|+.-|-. ...+++|+..|.+.+++--+-|++.- .++-.+..++.+. ++++-++.|.+.+...+..
T Consensus 24 pdVDlENQYYnsK~l~---e~~p~~Al~sF~kVlelEgEKgeWGF--KALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSA 98 (440)
T KOG1464|consen 24 PDVDLENQYYNSKGLK---EDEPKEALSSFQKVLELEGEKGEWGF--KALKQMIKINFRLGNYKEMMERYKQLLTYIKSA 98 (440)
T ss_pred CCcchHhhhhcccccc---ccCHHHHHHHHHHHHhcccccchhHH--HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 5555555555543322 34789999999999998766665533 4566667777666 8999999999888776543
Q ss_pred CChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 024043 106 GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEI 178 (273)
Q Consensus 106 g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~ 178 (273)
--..-.-++.+.+-.......+.+--.++|+..++..+...+.+.-..+-.++|.+++..|+|.+-.+++.+.
T Consensus 99 VTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqL 171 (440)
T KOG1464|consen 99 VTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQL 171 (440)
T ss_pred HhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHH
Confidence 2222233344444444444466666778899888888877654444466678899988888887766666554
No 211
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.90 E-value=0.0027 Score=35.44 Aligned_cols=32 Identities=19% Similarity=0.220 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Q 024043 152 NQCKQKVAQYAAELEQYHKSIEIYEEIARQSL 183 (273)
Q Consensus 152 ~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~ 183 (273)
+.++..+|.++..+|+|++|+++|++++...+
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 35788999999999999999999999986544
No 212
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.23 Score=42.35 Aligned_cols=140 Identities=7% Similarity=0.006 Sum_probs=94.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc--CHHHHHHHHHHHHHHHHhcCChhHHHHHH
Q 024043 38 KAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT--SSNEAISCLEQAVNMFCDIGRLSMAARYY 115 (273)
Q Consensus 38 ~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~--~~~eA~~~~~~Al~~~~~~g~~~~~a~~l 115 (273)
..+.+|...|++..-++.-...-+.......+ ..+.....+-.-+... .++.-+..+...++...+-.+....-..-
T Consensus 50 el~~lyv~~g~~~~l~~~i~~sre~m~~ftk~-k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le 128 (421)
T COG5159 50 ELFKLYVSKGDYCSLGDTITSSREAMEDFTKP-KITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELE 128 (421)
T ss_pred HHHHHHHhcCCcchHHHHHHhhHHHHHHhcch-hHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888888888888777777776654332 2334444444444333 67777888888877766555544444455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 024043 116 KEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEI 178 (273)
Q Consensus 116 ~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~ 178 (273)
.++..++...|.|..|+....--+.-+..-++......++.--..+|....+..++...+..+
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaA 191 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAA 191 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHH
Confidence 567777777899999999988877777776665555566666677787777777766655544
No 213
>PRK11906 transcriptional regulator; Provisional
Probab=96.89 E-value=0.041 Score=49.83 Aligned_cols=139 Identities=12% Similarity=0.046 Sum_probs=96.2
Q ss_pred HHHHH--HHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc----------CHHHHHHH
Q 024043 29 YEDAA--DLFDKAANSFKLA--KSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT----------SSNEAISC 94 (273)
Q Consensus 29 ~~~A~--~~~~~a~~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~----------~~~eA~~~ 94 (273)
+..|+ ++|.++-..+... ...+.|...|.+|.....- ..+-+.+|.-++.|+... +..+|+++
T Consensus 250 ~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~l---dp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~ 326 (458)
T PRK11906 250 YKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDI---QTLKTECYCLLAECHMSLALHGKSELELAAQKALEL 326 (458)
T ss_pred cccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccC---CcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence 34777 7777754333322 1345666677777732211 122344555555555322 34678888
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHH
Q 024043 95 LEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEI 174 (273)
Q Consensus 95 ~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~ 174 (273)
.++|+++-... +.++..+|.++...++++.|+..+++|+.+.. +.+.++...|.+..-.|+.++|++.
T Consensus 327 A~rAveld~~D------a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~P------n~A~~~~~~~~~~~~~G~~~~a~~~ 394 (458)
T PRK11906 327 LDYVSDITTVD------GKILAIMGLITGLSGQAKVSHILFEQAKIHST------DIASLYYYRALVHFHNEKIEEARIC 394 (458)
T ss_pred HHHHHhcCCCC------HHHHHHHHHHHHhhcchhhHHHHHHHHhhcCC------ccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888765433 45888889988888999999999999999964 4568899999999999999999999
Q ss_pred HHHHHHHH
Q 024043 175 YEEIARQS 182 (273)
Q Consensus 175 ~~~~~~~~ 182 (273)
.++++..+
T Consensus 395 i~~alrLs 402 (458)
T PRK11906 395 IDKSLQLE 402 (458)
T ss_pred HHHHhccC
Confidence 99987543
No 214
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.83 E-value=0.035 Score=42.35 Aligned_cols=106 Identities=16% Similarity=0.184 Sum_probs=79.1
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHH
Q 024043 74 QAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQ 153 (273)
Q Consensus 74 ~~~~~~~~~~~~~~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~ 153 (273)
..|..+-..+...+|.+|++.++....-|.-. .-+..+...++-+|...+++++|+..+++=+.++.... .+..
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g---~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp---~vdY 85 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEALDTRYPFG---EYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP---NVDY 85 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC---cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC---CccH
Confidence 34444455555568888888888766655422 23446788899999999999999999999888887664 4456
Q ss_pred HHHHHHHHHHHhcC---------------HHHHHHHHHHHHHHHhcc
Q 024043 154 CKQKVAQYAAELEQ---------------YHKSIEIYEEIARQSLNN 185 (273)
Q Consensus 154 ~~~~~a~~~~~~g~---------------y~~A~~~~~~~~~~~~~~ 185 (273)
++...|.++..+.. ..+|...|++.+...+++
T Consensus 86 a~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S 132 (142)
T PF13512_consen 86 AYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNS 132 (142)
T ss_pred HHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCC
Confidence 78888888877765 778889999988877776
No 215
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=96.71 E-value=0.098 Score=47.41 Aligned_cols=119 Identities=16% Similarity=0.041 Sum_probs=87.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 024043 42 SFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAE 120 (273)
Q Consensus 42 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~ 120 (273)
.+...|.+++|...+...+.... +| .....-++.++.+. ++.+|.+.+++++.+.... .....+.|.
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~P--~N----~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~------~~l~~~~a~ 382 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQP--DN----PYYLELAGDILLEANKAKEAIERLKKALALDPNS------PLLQLNLAQ 382 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc------cHHHHHHHH
Confidence 34446677777777777333221 23 34555678888777 9999999999999887654 347889999
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 024043 121 LYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEI 178 (273)
Q Consensus 121 ~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~ 178 (273)
.+...|++.+|+....+.+.-.. .-...|..+|..|..+|+-.+|...+-+.
T Consensus 383 all~~g~~~eai~~L~~~~~~~p------~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDP------EDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCC------CCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 99999999999998887654322 22467888999999999888888776554
No 216
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.68 E-value=0.069 Score=40.81 Aligned_cols=61 Identities=11% Similarity=0.205 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 024043 113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIA 179 (273)
Q Consensus 113 ~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~ 179 (273)
.++..++..+...|++++|+..+++++.+.+-+ -.++..+-.++...|++.+|++.|++..
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~------E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYD------EEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-------HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 367778888888899999999999999986532 3567888899999999999999999884
No 217
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=96.62 E-value=0.031 Score=48.33 Aligned_cols=154 Identities=14% Similarity=0.167 Sum_probs=95.6
Q ss_pred HHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHH
Q 024043 76 YVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQC 154 (273)
Q Consensus 76 ~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~ 154 (273)
..-+|.++... ++++|++.+.+. ++. .+..-.-.++...++++.|...++..-++.+ . .+
T Consensus 105 ~~~~A~i~~~~~~~~~AL~~l~~~-------~~l----E~~al~Vqi~L~~~R~dlA~k~l~~~~~~~e------D--~~ 165 (290)
T PF04733_consen 105 QLLAATILFHEGDYEEALKLLHKG-------GSL----ELLALAVQILLKMNRPDLAEKELKNMQQIDE------D--SI 165 (290)
T ss_dssp HHHHHHHHCCCCHHHHHHCCCTTT-------TCH----HHHHHHHHHHHHTT-HHHHHHHHHHHHCCSC------C--HH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHcc-------Ccc----cHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------c--HH
Confidence 34455566544 777777776542 222 2333455677788999999988877654421 1 23
Q ss_pred HHHHHH--HHHHhc--CHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH----------
Q 024043 155 KQKVAQ--YAAELE--QYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ---------- 220 (273)
Q Consensus 155 ~~~~a~--~~~~~g--~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~---------- 220 (273)
+.+++. +....| +|.+|..+|++...+... ....+...+.|++.+|++++|...+++..
T Consensus 166 l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~-------t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~L 238 (290)
T PF04733_consen 166 LTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGS-------TPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTL 238 (290)
T ss_dssp HHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS---------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHH
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCC-------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHH
Confidence 444444 444444 799999999997532211 22345567889999999999999998854
Q ss_pred -HHHH-HHhhcCH-hHHHHHHHhhhccCCCchhHHHHH
Q 024043 221 -DIAA-SMDEEDI-AKFTDVVKEFDSMTPLDPWKTTLL 255 (273)
Q Consensus 221 -~ll~-a~~~~d~-~~~~~~~~~~~~~~~ld~~~~~~l 255 (273)
.++- +...|+. +..++.+.......|-.||...+-
T Consensus 239 aNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~~~ 276 (290)
T PF04733_consen 239 ANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVKDLA 276 (290)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHHHHH
Confidence 2222 2334554 667777777777788888876543
No 218
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.61 E-value=0.2 Score=43.96 Aligned_cols=59 Identities=14% Similarity=0.216 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043 155 KQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ 220 (273)
Q Consensus 155 ~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~ 220 (273)
...+|.++.-.-.|.+||++|.+++...+. +.. .-..+.+|+...+-++-+.+.+..|.
T Consensus 154 qLSLAsvhYmR~HYQeAIdvYkrvL~dn~e-----y~a--lNVy~ALCyyKlDYydvsqevl~vYL 212 (557)
T KOG3785|consen 154 QLSLASVHYMRMHYQEAIDVYKRVLQDNPE-----YIA--LNVYMALCYYKLDYYDVSQEVLKVYL 212 (557)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhcChh-----hhh--hHHHHHHHHHhcchhhhHHHHHHHHH
Confidence 455667777677899999999998743222 111 22346788888876666777777775
No 219
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.062 Score=44.46 Aligned_cols=80 Identities=16% Similarity=0.203 Sum_probs=36.7
Q ss_pred CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhc
Q 024043 87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE 166 (273)
Q Consensus 87 ~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g 166 (273)
+|+.|+.+|.+|+.+... .+..+.|-+.+|.++.+++.+.+-..+|+++.. +......-+|.+.....
T Consensus 25 ~y~~ai~~y~raI~~nP~------~~~Y~tnralchlk~~~~~~v~~dcrralql~~------N~vk~h~flg~~~l~s~ 92 (284)
T KOG4642|consen 25 RYDDAIDCYSRAICINPT------VASYYTNRALCHLKLKHWEPVEEDCRRALQLDP------NLVKAHYFLGQWLLQSK 92 (284)
T ss_pred hhchHHHHHHHHHhcCCC------cchhhhhHHHHHHHhhhhhhhhhhHHHHHhcCh------HHHHHHHHHHHHHHhhc
Confidence 444555555554443321 122444444555444555555555555554432 22233444444445555
Q ss_pred CHHHHHHHHHHH
Q 024043 167 QYHKSIEIYEEI 178 (273)
Q Consensus 167 ~y~~A~~~~~~~ 178 (273)
.|++||..++++
T Consensus 93 ~~~eaI~~Lqra 104 (284)
T KOG4642|consen 93 GYDEAIKVLQRA 104 (284)
T ss_pred cccHHHHHHHHH
Confidence 555555555554
No 220
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.58 E-value=0.8 Score=44.72 Aligned_cols=184 Identities=10% Similarity=-0.024 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc---CHHHHHHHHHHHHHHHHhcCChh
Q 024043 33 ADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT---SSNEAISCLEQAVNMFCDIGRLS 109 (273)
Q Consensus 33 ~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~---~~~eA~~~~~~Al~~~~~~g~~~ 109 (273)
+.++...|.++...|++++|..+..++.+..++.+.+.-+..+...-+.+.... -+.+....|..--....... +.
T Consensus 497 ~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~-~~ 575 (894)
T COG2909 497 IVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQK-PR 575 (894)
T ss_pred hhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhc-cc
Confidence 445556688999999999999999999999999998888888877777777554 23333333332222211111 11
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCC-cccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchh
Q 024043 110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEV-TTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLL 188 (273)
Q Consensus 110 ~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~-~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~ 188 (273)
..-..... +.++...-+++.+..-..+++++-..... +....-.+..++.++...|++++|.....+.-....+...-
T Consensus 576 ~~f~~~~r-~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~ 654 (894)
T COG2909 576 HEFLVRIR-AQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYH 654 (894)
T ss_pred chhHHHHH-HHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCC
Confidence 11111112 22222222366666666666666544332 22222333589999999999999999988875333332100
Q ss_pred hhchhhHHHHHHHHHHhcCCHHHHHHHHHH
Q 024043 189 KYGVKGHLLNAGICQLCKGDVVAITNALER 218 (273)
Q Consensus 189 ~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~ 218 (273)
.+-.+....--.+.++.+||...+..-+.+
T Consensus 655 ~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 655 VDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred chHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 111111111113446778998877665554
No 221
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=96.55 E-value=0.44 Score=43.41 Aligned_cols=174 Identities=14% Similarity=0.020 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc--C------HHHHHHHHHHHHHHHHhc-
Q 024043 35 LFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT--S------SNEAISCLEQAVNMFCDI- 105 (273)
Q Consensus 35 ~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~--~------~~eA~~~~~~Al~~~~~~- 105 (273)
...++|...-..++|+-|...|..+..=+..-+.+.-.|.+++-++.+.... . .++...+++.|+..|...
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~ 289 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSA 289 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhh
Confidence 4557899999999999999999999988876666777777888888777555 2 247888899999999883
Q ss_pred ----CChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh-ccCCcccHHHHHHHHHHHH--HHhcCHHHHHHHHHHH
Q 024043 106 ----GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQ-NEEVTTSANQCKQKVAQYA--AELEQYHKSIEIYEEI 178 (273)
Q Consensus 106 ----g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~-~~~~~~~~~~~~~~~a~~~--~~~g~y~~A~~~~~~~ 178 (273)
..+..+.++..-.++++...|.+.+|...+-+.....- ..-.+.+.+-.+-++|.++ ........-..-++
T Consensus 290 ~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~~~~~~~~~~~~~~r~R-- 367 (414)
T PF12739_consen 290 LPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCYASLRSNRPSPGLTRFR-- 367 (414)
T ss_pred ccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhhcccccCCCCccchhhH--
Confidence 33457888888999999999999888888777775532 1111112444555555555 11100000000000
Q ss_pred HHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 024043 179 ARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDI 222 (273)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~l 222 (273)
...-.+.-+|.-|...|....|.+|+.....+
T Consensus 368 ------------K~af~~vLAg~~~~~~~~~~~a~rcy~~a~~v 399 (414)
T PF12739_consen 368 ------------KYAFHMVLAGHRYSKAGQKKHALRCYKQALQV 399 (414)
T ss_pred ------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 11122334566788889998888888876543
No 222
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.48 E-value=0.33 Score=42.61 Aligned_cols=161 Identities=19% Similarity=0.171 Sum_probs=89.0
Q ss_pred HHHHHHhhc-cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 024043 12 EKKAEKKLN-GWGLFGSKYEDAADLFDKA---------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQA 75 (273)
Q Consensus 12 ~~~Aek~~k-~~~~~~~~~~~A~~~~~~a---------------~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~ 75 (273)
.++|.|.=+ --++-+.||..|+.+.+.. +-++...|+|++|++.|.-+.+- .+.. +..
T Consensus 20 ~kkarK~P~Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~----~~~~--~el 93 (557)
T KOG3785|consen 20 IKKARKMPELEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK----DDAP--AEL 93 (557)
T ss_pred chhhhcCchHHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc----CCCC--ccc
Confidence 566666443 1122236888888887753 56778888999888888766541 1111 223
Q ss_pred HHHHHHHHhcc-CHHHHHHHHHHH----------HHHHHhcCChhHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHH
Q 024043 76 YVDAAHCYKKT-SSNEAISCLEQA----------VNMFCDIGRLSMAARYYKEIAELYESE---HNIEQTIVFFEKAADM 141 (273)
Q Consensus 76 ~~~~~~~~~~~-~~~eA~~~~~~A----------l~~~~~~g~~~~~a~~l~~lg~~~~~~---g~~~~A~~~y~~Al~~ 141 (273)
-.+++-|+.-. .|.+|.....+| ..+..+.+|-...-....+++...+.+ ....=...+|++|+++
T Consensus 94 ~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdv 173 (557)
T KOG3785|consen 94 GVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDV 173 (557)
T ss_pred chhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34455555444 666666555444 223344455444444444444444321 0011123456667777
Q ss_pred Hhcc--CCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 024043 142 FQNE--EVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIA 179 (273)
Q Consensus 142 ~~~~--~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~ 179 (273)
|... .++ .--..-..+|.||.++.-|+-+.+.+.--+
T Consensus 174 YkrvL~dn~-ey~alNVy~ALCyyKlDYydvsqevl~vYL 212 (557)
T KOG3785|consen 174 YKRVLQDNP-EYIALNVYMALCYYKLDYYDVSQEVLKVYL 212 (557)
T ss_pred HHHHHhcCh-hhhhhHHHHHHHHHhcchhhhHHHHHHHHH
Confidence 7653 222 222344678899999998887777655444
No 223
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.44 E-value=0.006 Score=33.67 Aligned_cols=30 Identities=17% Similarity=0.358 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Q 024043 154 CKQKVAQYAAELEQYHKSIEIYEEIARQSL 183 (273)
Q Consensus 154 ~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~ 183 (273)
++.++|.++...|++++|++.|++++...+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 466777777777777777777777765444
No 224
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=96.40 E-value=0.011 Score=51.25 Aligned_cols=95 Identities=16% Similarity=0.037 Sum_probs=74.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHH
Q 024043 38 KAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYK 116 (273)
Q Consensus 38 ~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~ 116 (273)
+-|+-|-.+|.|++|++||.+++.++.... ..+.+-+.+|.+. ++..|..-+..|+.+-+. -.++|.
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia~~P~Np------V~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~------Y~KAYS 169 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIAVYPHNP------VYHINRALAYLKQKSFAQAEEDCEAAIALDKL------YVKAYS 169 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhccCCCCc------cchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH------HHHHHH
Confidence 348889999999999999999998875332 3566777778777 888888888888876543 245777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 024043 117 EIAELYESEHNIEQTIVFFEKAADMFQN 144 (273)
Q Consensus 117 ~lg~~~~~~g~~~~A~~~y~~Al~~~~~ 144 (273)
.-|..-..+|...+|-+-|+.++++-..
T Consensus 170 RR~~AR~~Lg~~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 170 RRMQARESLGNNMEAKKDCETVLALEPK 197 (536)
T ss_pred HHHHHHHHHhhHHHHHHhHHHHHhhCcc
Confidence 7788888889999999999999887543
No 225
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.39 E-value=0.024 Score=49.02 Aligned_cols=111 Identities=13% Similarity=0.120 Sum_probs=93.2
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhc
Q 024043 27 SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI 105 (273)
Q Consensus 27 ~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~ 105 (273)
++.++-++-|..-||-|...++|..|.++|.+++.. +.+++.--+..|.|-+-|.... +|..|++-+.+|+.+-..
T Consensus 75 ~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~--kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~- 151 (390)
T KOG0551|consen 75 GEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKK--KCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPT- 151 (390)
T ss_pred CChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhh--cCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcc-
Confidence 566778888999999999999999999999998764 7888888899999988888777 899999999888876443
Q ss_pred CChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 024043 106 GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE 145 (273)
Q Consensus 106 g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~ 145 (273)
-.+++.+-+.++..+.++..|+.+.+..+.+..+.
T Consensus 152 -----h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~ 186 (390)
T KOG0551|consen 152 -----HLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEA 186 (390)
T ss_pred -----hhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 24578888899999899999999999887776543
No 226
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.39 E-value=1.1 Score=43.82 Aligned_cols=210 Identities=12% Similarity=-0.023 Sum_probs=127.6
Q ss_pred HhhHHHHHHHHHHhhccccCCC-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 024043 5 IARAEEFEKKAEKKLNGWGLFG-SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCY 83 (273)
Q Consensus 5 ~~~a~~l~~~Aek~~k~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~ 83 (273)
..||..++.++++-++-.+-+. ++..-.+.. -.+.+-...|++++|.+.-..+.....+.- +..-+.++..+|.+.
T Consensus 431 ~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~a--L~a~val~~~~~e~a~~lar~al~~L~~~~-~~~r~~~~sv~~~a~ 507 (894)
T COG2909 431 LAEAETLIARLEHFLKAPMHSRQGDLLAEFQA--LRAQVALNRGDPEEAEDLARLALVQLPEAA-YRSRIVALSVLGEAA 507 (894)
T ss_pred hHHHHHHHHHHHHHhCcCcccchhhHHHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHhccccc-chhhhhhhhhhhHHH
Confidence 6799999999999888212222 333222222 235566678999999999888887765443 344455677777777
Q ss_pred h-ccCHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc--cC-CcccHHHHHHHHH
Q 024043 84 K-KTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQN--EE-VTTSANQCKQKVA 159 (273)
Q Consensus 84 ~-~~~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~--~~-~~~~~~~~~~~~a 159 (273)
- ++++++|..+.+++.++.+..+....+..+...-+.++..+|+...|.. .++-...+. .. .+....-......
T Consensus 508 ~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~--~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 508 HIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQ--EKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHH--HHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 4 4499999999999999999999999999999999999999993333222 222222221 11 1222222223322
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043 160 QYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ 220 (273)
Q Consensus 160 ~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~ 220 (273)
...... +++.+..-................-..-.+..+..+....||.++|...+++..
T Consensus 586 ll~~~~-r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~ 645 (894)
T COG2909 586 LLRAWL-RLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELE 645 (894)
T ss_pred HHHHHH-HHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 222222 255555544443211111100011111222355667888999999998888765
No 227
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.35 E-value=0.11 Score=41.61 Aligned_cols=123 Identities=7% Similarity=0.049 Sum_probs=86.5
Q ss_pred HHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHH
Q 024043 80 AHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKV 158 (273)
Q Consensus 80 ~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~ 158 (273)
+...+.. ||+..+.-..+.+++.....+ ...+|..+.+.|++.+|..+|++|+.-.= ......+..+
T Consensus 63 ~~a~~q~ldP~R~~Rea~~~~~~ApTvqn-------r~rLa~al~elGr~~EA~~hy~qalsG~f-----A~d~a~lLgl 130 (251)
T COG4700 63 LMALQQKLDPERHLREATEELAIAPTVQN-------RYRLANALAELGRYHEAVPHYQQALSGIF-----AHDAAMLLGL 130 (251)
T ss_pred HHHHHHhcChhHHHHHHHHHHhhchhHHH-------HHHHHHHHHHhhhhhhhHHHHHHHhcccc-----CCCHHHHHHH
Confidence 3334444 888777777776666654443 45677777778999999999999885322 2224678899
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 024043 159 AQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERY 219 (273)
Q Consensus 159 a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~ 219 (273)
+...+..+++..|...+++.....+.. ......+-.+-++-..|.+.+|+..|+..
T Consensus 131 A~Aqfa~~~~A~a~~tLe~l~e~~pa~-----r~pd~~Ll~aR~laa~g~~a~Aesafe~a 186 (251)
T COG4700 131 AQAQFAIQEFAAAQQTLEDLMEYNPAF-----RSPDGHLLFARTLAAQGKYADAESAFEVA 186 (251)
T ss_pred HHHHHhhccHHHHHHHHHHHhhcCCcc-----CCCCchHHHHHHHHhcCCchhHHHHHHHH
Confidence 999999999999999999986433221 11223344567778889999899888864
No 228
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.34 E-value=0.63 Score=43.96 Aligned_cols=38 Identities=13% Similarity=0.176 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Q 024043 31 DAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLES 68 (273)
Q Consensus 31 ~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 68 (273)
+..-+...++..|-..|.+++|.+.|++++.--....|
T Consensus 246 q~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrD 283 (835)
T KOG2047|consen 246 QLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRD 283 (835)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhh
Confidence 44445555666666777777777777777655444444
No 229
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=96.33 E-value=0.13 Score=43.36 Aligned_cols=92 Identities=14% Similarity=0.059 Sum_probs=83.0
Q ss_pred cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHh
Q 024043 46 AKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYES 124 (273)
Q Consensus 46 ~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~ 124 (273)
...-...++.+.+|.+.+.+.+...-.......+|.-|... ++++|+++|+.+...|++.|-......++..+-.|...
T Consensus 151 ~~hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~ 230 (247)
T PF11817_consen 151 VDHSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKR 230 (247)
T ss_pred cchHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 44556789999999999999999888888999999999877 99999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHH
Q 024043 125 EHNIEQTIVFFEK 137 (273)
Q Consensus 125 ~g~~~~A~~~y~~ 137 (273)
.|+.+..+.+.-+
T Consensus 231 ~~~~~~~l~~~le 243 (247)
T PF11817_consen 231 LGDVEDYLTTSLE 243 (247)
T ss_pred hCCHHHHHHHHHH
Confidence 9999987776543
No 230
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.30 E-value=0.2 Score=42.85 Aligned_cols=124 Identities=11% Similarity=0.038 Sum_probs=88.2
Q ss_pred HhhHHHHHHHHHHhhccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 024043 5 IARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYK 84 (273)
Q Consensus 5 ~~~a~~l~~~Aek~~k~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~ 84 (273)
.++.+.++...+.++.. .|+--+-|. ..|.+|...|+++.|..+|.+|..+.-+.. ..+...|+++.
T Consensus 135 ~~~~~~l~a~Le~~L~~----nP~d~egW~---~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~------~~~~g~aeaL~ 201 (287)
T COG4235 135 EQEMEALIARLETHLQQ----NPGDAEGWD---LLGRAYMALGRASDALLAYRNALRLAGDNP------EILLGLAEALY 201 (287)
T ss_pred cccHHHHHHHHHHHHHh----CCCCchhHH---HHHHHHHHhcchhHHHHHHHHHHHhCCCCH------HHHHHHHHHHH
Confidence 35678888888888862 233334443 358899999999999999999998853322 23333444432
Q ss_pred cc----CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCC
Q 024043 85 KT----SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEV 147 (273)
Q Consensus 85 ~~----~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~ 147 (273)
.. ...++...+++++..-. ...+++.-+|..+...|+|.+|+...+.-++.......
T Consensus 202 ~~a~~~~ta~a~~ll~~al~~D~------~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 202 YQAGQQMTAKARALLRQALALDP------ANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HhcCCcccHHHHHHHHHHHhcCC------ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 22 67888899998886532 23467888888998899999999999988888766554
No 231
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=96.29 E-value=0.68 Score=40.42 Aligned_cols=224 Identities=9% Similarity=0.080 Sum_probs=147.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc--CHHHHHHHHHHHHHHHHhcCChhHHHHHH
Q 024043 38 KAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT--SSNEAISCLEQAVNMFCDIGRLSMAARYY 115 (273)
Q Consensus 38 ~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~--~~~eA~~~~~~Al~~~~~~g~~~~~a~~l 115 (273)
+.|.++...|+..+-.+.....-..+...+. ..++.....+...+... ..+.-+..+..+++-..+..+....-..-
T Consensus 53 el~~ll~~~~~~~~lr~li~~~Rpf~~~v~K-akaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Le 131 (411)
T KOG1463|consen 53 ELGDLLAKEGDAEELRDLITSLRPFLSSVSK-AKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLE 131 (411)
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4578889999999888887777777665543 44566666777777665 67788888888888887777766666677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HHhccch------
Q 024043 116 KEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIAR--QSLNNNL------ 187 (273)
Q Consensus 116 ~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~--~~~~~~~------ 187 (273)
.++..+|...++|.+|+.....-+.-+...++.....++..-=..+|..+.+..+|...+..+-. ...-.|+
T Consensus 132 arli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~l 211 (411)
T KOG1463|consen 132 ARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATL 211 (411)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHH
Confidence 78888999999999999999888877777666555555666666777888788887776655421 1111110
Q ss_pred -----------hhhchh-hHHHHHHHHHHhcCCHHHHHHHHHHHH---------------------------------HH
Q 024043 188 -----------LKYGVK-GHLLNAGICQLCKGDVVAITNALERYQ---------------------------------DI 222 (273)
Q Consensus 188 -----------~~~~~~-~~~~~~gl~~l~~gd~~~A~~~~~~~~---------------------------------~l 222 (273)
..|.+. .+++.+..-+-..++.++|...+.... .+
T Consensus 212 DLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~Amkav 291 (411)
T KOG1463|consen 212 DLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAV 291 (411)
T ss_pred HHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHH
Confidence 011111 122222221222233333333332211 45
Q ss_pred HHHHhhcCHhHHHHHHHhhhccCCCchhHHHHHHHHHHhc
Q 024043 223 AASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKL 262 (273)
Q Consensus 223 l~a~~~~d~~~~~~~~~~~~~~~~ld~~~~~~l~~~~~~~ 262 (273)
-+|+.++++..|..++.+|..-..-||....=|..+-+++
T Consensus 292 AeA~~nRSLkdF~~AL~~yk~eL~~D~ivr~Hl~~Lyd~l 331 (411)
T KOG1463|consen 292 AEAFGNRSLKDFEKALADYKKELAEDPIVRSHLQSLYDNL 331 (411)
T ss_pred HHHhcCCcHHHHHHHHHHhHHHHhcChHHHHHHHHHHHHH
Confidence 6688899999999999999988888998876555555444
No 232
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.29 E-value=0.58 Score=39.56 Aligned_cols=135 Identities=12% Similarity=0.134 Sum_probs=99.5
Q ss_pred HHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHH
Q 024043 74 QAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSAN 152 (273)
Q Consensus 74 ~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~ 152 (273)
.+.+.+..|+.-. .|.-+++.+.+.++ .++.........+|.+-.+-||.+.|-.++++.-......+......
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~-----~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~ 252 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIK-----YYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKI 252 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHH-----hCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhH
Confidence 3444555555544 77888888888877 34455567888899999889999999999986555444445556667
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043 153 QCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ 220 (273)
Q Consensus 153 ~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~ 220 (273)
.+..+.+.++....+|.+|...|.+++.....++ .+..+-.+|.+..|+...|.+.++...
T Consensus 253 ~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~-------~a~NnKALcllYlg~l~DAiK~~e~~~ 313 (366)
T KOG2796|consen 253 MVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNA-------VANNNKALCLLYLGKLKDALKQLEAMV 313 (366)
T ss_pred HHHhhhhhheecccchHHHHHHHhhccccCCCch-------hhhchHHHHHHHHHHHHHHHHHHHHHh
Confidence 7888889999999999999999999875433332 234556788899999988888777654
No 233
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.27 E-value=0.015 Score=32.34 Aligned_cols=31 Identities=13% Similarity=0.296 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Q 024043 153 QCKQKVAQYAAELEQYHKSIEIYEEIARQSL 183 (273)
Q Consensus 153 ~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~ 183 (273)
.++..+|.++..+|++++|+++|++++...+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5788999999999999999999999976543
No 234
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.016 Score=47.78 Aligned_cols=103 Identities=14% Similarity=0.160 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHH
Q 024043 33 ADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMA 111 (273)
Q Consensus 33 ~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~ 111 (273)
++-...-|+.+..-..|+.|+++|.+|+.+.. -.+..|.+-+.||.+. +++.+..-.++|+++-. ..
T Consensus 10 a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP------~~~~Y~tnralchlk~~~~~~v~~dcrralql~~------N~ 77 (284)
T KOG4642|consen 10 AEQLKEQGNKCFIPKRYDDAIDCYSRAICINP------TVASYYTNRALCHLKLKHWEPVEEDCRRALQLDP------NL 77 (284)
T ss_pred HHHHHhccccccchhhhchHHHHHHHHHhcCC------CcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcCh------HH
Confidence 33444457778888899999999999997742 2245688889999888 89999999999998754 45
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCC
Q 024043 112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEV 147 (273)
Q Consensus 112 a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~ 147 (273)
++....+|..+.....|++|+..+++|..+++...-
T Consensus 78 vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~ 113 (284)
T KOG4642|consen 78 VKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPF 113 (284)
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCC
Confidence 678889999999999999999999999999987654
No 235
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.24 E-value=0.016 Score=34.68 Aligned_cols=30 Identities=10% Similarity=0.141 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 024043 114 YYKEIAELYESEHNIEQTIVFFEKAADMFQ 143 (273)
Q Consensus 114 ~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~ 143 (273)
++..+|.+|..+|++++|++.|+++++...
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P 32 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDP 32 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 455666666666666666666666666654
No 236
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.19 E-value=0.13 Score=43.97 Aligned_cols=97 Identities=11% Similarity=0.073 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHhccchh
Q 024043 112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE---QYHKSIEIYEEIARQSLNNNLL 188 (273)
Q Consensus 112 a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g---~y~~A~~~~~~~~~~~~~~~~~ 188 (273)
++.|..||.+|..+|+++.|...|.+|+.+.... .+.+..+|.++..+. .-.++..++++++...+.+.
T Consensus 156 ~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n------~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~i-- 227 (287)
T COG4235 156 AEGWDLLGRAYMALGRASDALLAYRNALRLAGDN------PEILLGLAEALYYQAGQQMTAKARALLRQALALDPANI-- 227 (287)
T ss_pred chhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccH--
Confidence 5589999999999999999999999999986433 366778888776543 45788899999986555442
Q ss_pred hhchhhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 024043 189 KYGVKGHLLNAGICQLCKGDVVAITNALERYQD 221 (273)
Q Consensus 189 ~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~ 221 (273)
..+.-++..+..+||+.+|...|+...+
T Consensus 228 -----ral~lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 228 -----RALSLLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred -----HHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 2445567778899999999999988643
No 237
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.19 E-value=0.91 Score=46.50 Aligned_cols=158 Identities=11% Similarity=0.066 Sum_probs=106.7
Q ss_pred HHHcCCHHHHHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 024043 43 FKLAKSWDKAGATYVKLANCH--LKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAE 120 (273)
Q Consensus 43 ~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~aa~~~~~~~~~~~~~~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~ 120 (273)
+-..++.++|...+++|+... ++-........+|.|+-+.|.. -+.-.+.|++|..+.. +-.++..|..
T Consensus 1468 ~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~--eesl~kVFeRAcqycd-------~~~V~~~L~~ 1538 (1710)
T KOG1070|consen 1468 HLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGT--EESLKKVFERACQYCD-------AYTVHLKLLG 1538 (1710)
T ss_pred HhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCc--HHHHHHHHHHHHHhcc-------hHHHHHHHHH
Confidence 445778899999999988664 1111223344566676666652 2334455666655432 2347788889
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHH
Q 024043 121 LYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAG 200 (273)
Q Consensus 121 ~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 200 (273)
+|...+.+++|.++|+.-+.-|.+ ...+|..+|..+....+-+.|.+++.+++...+.. .+.+..-+-.
T Consensus 1539 iy~k~ek~~~A~ell~~m~KKF~q------~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~-----eHv~~IskfA 1607 (1710)
T KOG1070|consen 1539 IYEKSEKNDEADELLRLMLKKFGQ------TRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQ-----EHVEFISKFA 1607 (1710)
T ss_pred HHHHhhcchhHHHHHHHHHHHhcc------hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchh-----hhHHHHHHHH
Confidence 999989999999999988888762 24678999999999888888889999887544432 2333333344
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 024043 201 ICQLCKGDVVAITNALERYQ 220 (273)
Q Consensus 201 l~~l~~gd~~~A~~~~~~~~ 220 (273)
..-...||.++++..|+...
T Consensus 1608 qLEFk~GDaeRGRtlfEgll 1627 (1710)
T KOG1070|consen 1608 QLEFKYGDAERGRTLFEGLL 1627 (1710)
T ss_pred HHHhhcCCchhhHHHHHHHH
Confidence 45567889888888877543
No 238
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.15 E-value=1.1 Score=45.98 Aligned_cols=151 Identities=12% Similarity=0.132 Sum_probs=110.6
Q ss_pred cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHh
Q 024043 46 AKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYES 124 (273)
Q Consensus 46 ~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~ 124 (273)
-|.-+.-.+.|++|.... ++-.+|..+.-+|... .+++|.++|+.-+.-|. +.-.+|...|..+..
T Consensus 1510 yG~eesl~kVFeRAcqyc-------d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~------q~~~vW~~y~~fLl~ 1576 (1710)
T KOG1070|consen 1510 YGTEESLKKVFERACQYC-------DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG------QTRKVWIMYADFLLR 1576 (1710)
T ss_pred hCcHHHHHHHHHHHHHhc-------chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc------chhhHHHHHHHHHhc
Confidence 344445555666665543 3456888888888877 89999999998777665 345689999999999
Q ss_pred cCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHH
Q 024043 125 EHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQL 204 (273)
Q Consensus 125 ~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l 204 (273)
..+-+.|.....+|+...+.. ...+...+.|.+-++.|+.+++..+|+-.+...+.. .+.|.-....-.
T Consensus 1577 ~ne~~aa~~lL~rAL~~lPk~----eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKR-------tDlW~VYid~ei 1645 (1710)
T KOG1070|consen 1577 QNEAEAARELLKRALKSLPKQ----EHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKR-------TDLWSVYIDMEI 1645 (1710)
T ss_pred ccHHHHHHHHHHHHHhhcchh----hhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccc-------hhHHHHHHHHHH
Confidence 888899999999999988762 334678899999999999999999999887544332 122332233345
Q ss_pred hcCCHHHHHHHHHHHH
Q 024043 205 CKGDVVAITNALERYQ 220 (273)
Q Consensus 205 ~~gd~~~A~~~~~~~~ 220 (273)
..||..-.+..|++..
T Consensus 1646 k~~~~~~vR~lfeRvi 1661 (1710)
T KOG1070|consen 1646 KHGDIKYVRDLFERVI 1661 (1710)
T ss_pred ccCCHHHHHHHHHHHH
Confidence 6678778888888754
No 239
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.14 E-value=0.0048 Score=34.84 Aligned_cols=33 Identities=18% Similarity=0.344 Sum_probs=25.4
Q ss_pred HHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHH
Q 024043 134 FFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSI 172 (273)
Q Consensus 134 ~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~ 172 (273)
+|++|+++.+.. ..++.++|.++...|++++|+
T Consensus 1 ~y~kAie~~P~n------~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNN------AEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCC------HHHHHHHHHHHHHCcCHHhhc
Confidence 477888876432 467888999999999988886
No 240
>PRK11906 transcriptional regulator; Provisional
Probab=96.11 E-value=0.24 Score=45.03 Aligned_cols=118 Identities=10% Similarity=0.072 Sum_probs=85.0
Q ss_pred CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHHHhccCCcccHHHHHHH
Q 024043 87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE---------HNIEQTIVFFEKAADMFQNEEVTTSANQCKQK 157 (273)
Q Consensus 87 ~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~---------g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~ 157 (273)
+...|+.+|.+|+....-. ..-+.++..++.++... .+..+|.+..++|+++-..+ +.++..
T Consensus 273 ~~~~Al~lf~ra~~~~~ld---p~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~D------a~a~~~ 343 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQ---TLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVD------GKILAI 343 (458)
T ss_pred HHHHHHHHHHHHhhcccCC---cccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCC------HHHHHH
Confidence 6678888999988322111 11234555566665543 24567788888888875433 477889
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043 158 VAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ 220 (273)
Q Consensus 158 ~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~ 220 (273)
+|.++...++++.|+..|+++....++. ...++..|.++...|+.++|.+.+++..
T Consensus 344 ~g~~~~~~~~~~~a~~~f~rA~~L~Pn~-------A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 344 MGLITGLSGQAKVSHILFEQAKIHSTDI-------ASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred HHHHHHhhcchhhHHHHHHHHhhcCCcc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 9999999999999999999997655544 3355667888889999999999999865
No 241
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.06 E-value=0.4 Score=43.93 Aligned_cols=123 Identities=15% Similarity=0.123 Sum_probs=85.1
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhc----------CCh----
Q 024043 44 KLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI----------GRL---- 108 (273)
Q Consensus 44 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~----------g~~---- 108 (273)
....++..-+.+-.+|+++... -+.+|.-++. ... ...+|.++|++|++.-+.. |..
T Consensus 179 WRERnp~aRIkaA~eALei~pd------CAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~ 250 (539)
T PF04184_consen 179 WRERNPQARIKAAKEALEINPD------CADAYILLAE--EEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAW 250 (539)
T ss_pred HhcCCHHHHHHHHHHHHHhhhh------hhHHHhhccc--ccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhh
Confidence 3456777888888888887632 2334433321 111 4678888888887765432 111
Q ss_pred -----hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 024043 109 -----SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEI 178 (273)
Q Consensus 109 -----~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~ 178 (273)
.--..+...+|++..++|+.++|++.++.-+..+... ..-.+..++..++..++.|.++..++.+-
T Consensus 251 ~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~----~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 251 HRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNL----DNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred hccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCcc----chhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 1124456789999999999999999999887766532 22357889999999999999999988775
No 242
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.05 E-value=0.74 Score=38.61 Aligned_cols=173 Identities=16% Similarity=0.183 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChh
Q 024043 31 DAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLS 109 (273)
Q Consensus 31 ~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~ 109 (273)
.+..+|.+ |..-...|+|++|++.|+....-+ -..+.. =++...++.++.+. ++++|+...++=+.+|....+
T Consensus 33 p~~~LY~~-g~~~L~~gn~~~A~~~fe~l~~~~--p~s~~~-~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-- 106 (254)
T COG4105 33 PASELYNE-GLTELQKGNYEEAIKYFEALDSRH--PFSPYS-EQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-- 106 (254)
T ss_pred CHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHcC--CCCccc-HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC--
Confidence 57788888 555566899999999999877333 333333 44555566666555 999999999998888765544
Q ss_pred HHHHHHHHHHHHHHhc-----CC---HHHHHHHHHHHHHHHhccCCccc-----------HHHHHHHHHHHHHHhcCHHH
Q 024043 110 MAARYYKEIAELYESE-----HN---IEQTIVFFEKAADMFQNEEVTTS-----------ANQCKQKVAQYAAELEQYHK 170 (273)
Q Consensus 110 ~~a~~l~~lg~~~~~~-----g~---~~~A~~~y~~Al~~~~~~~~~~~-----------~~~~~~~~a~~~~~~g~y~~ 170 (273)
+.-++.-.|.++... .| ..+|+.-+++-+.-|+.+.-... .+.--..+|..|.+.|.|.-
T Consensus 107 -~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~A 185 (254)
T COG4105 107 -ADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVA 185 (254)
T ss_pred -hhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHH
Confidence 455566666665543 22 34566666666666665432111 12223456778999999999
Q ss_pred HHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHH
Q 024043 171 SIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITN 214 (273)
Q Consensus 171 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~ 214 (273)
|+..+++++......+ .+.+.+..+..++...|-.+.|..
T Consensus 186 A~nR~~~v~e~y~~t~----~~~eaL~~l~eaY~~lgl~~~a~~ 225 (254)
T COG4105 186 AINRFEEVLENYPDTS----AVREALARLEEAYYALGLTDEAKK 225 (254)
T ss_pred HHHHHHHHHhcccccc----chHHHHHHHHHHHHHhCChHHHHH
Confidence 9999999986644432 355677777778888876655544
No 243
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.92 E-value=0.0038 Score=35.29 Aligned_cols=34 Identities=24% Similarity=0.516 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHH
Q 024043 94 CLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIV 133 (273)
Q Consensus 94 ~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~ 133 (273)
+|++|+++.+... .++.++|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~------~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNA------EAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCH------HHHHHHHHHHHHCcCHHhhcC
Confidence 4788888877664 499999999999999999863
No 244
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.90 E-value=0.018 Score=34.39 Aligned_cols=34 Identities=9% Similarity=0.005 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccc
Q 024043 153 QCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNN 186 (273)
Q Consensus 153 ~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~ 186 (273)
.++..+|.+|..+|++++|++.|++++...++++
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~ 35 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDP 35 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 4678899999999999999999999998877764
No 245
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.83 E-value=0.077 Score=43.42 Aligned_cols=27 Identities=7% Similarity=0.182 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 024043 153 QCKQKVAQYAAELEQYHKSIEIYEEIA 179 (273)
Q Consensus 153 ~~~~~~a~~~~~~g~y~~A~~~~~~~~ 179 (273)
+++.-+|..+...|+.++|..+|.-++
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLai 264 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAV 264 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 445555555555555556655555554
No 246
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.78 E-value=0.25 Score=45.71 Aligned_cols=99 Identities=13% Similarity=0.055 Sum_probs=65.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHH
Q 024043 38 KAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYK 116 (273)
Q Consensus 38 ~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~ 116 (273)
..|.++...|+.++|++.|+++.......+. -..-++.+++.++--. ++++|.+++.+..+. +.+.-|-...
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Q--l~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~-----s~WSka~Y~Y 344 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIESQSEWKQ--LHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE-----SKWSKAFYAY 344 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccchhhHHh--HHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc-----cccHHHHHHH
Confidence 4588888888999999999888854433332 2345677778777655 888888888776552 2334556666
Q ss_pred HHHHHHHhcCCH-------HHHHHHHHHHHHHHh
Q 024043 117 EIAELYESEHNI-------EQTIVFFEKAADMFQ 143 (273)
Q Consensus 117 ~lg~~~~~~g~~-------~~A~~~y~~Al~~~~ 143 (273)
-.|-++...|+. ++|.+++.++-.+..
T Consensus 345 ~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 345 LAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred HHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 677777777777 555555555555444
No 247
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.76 E-value=0.64 Score=44.00 Aligned_cols=142 Identities=17% Similarity=0.194 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc------CHHHHHHHHHHHHHHHH---hcCChhHHHHHHHHHH
Q 024043 49 WDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT------SSNEAISCLEQAVNMFC---DIGRLSMAARYYKEIA 119 (273)
Q Consensus 49 ~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~------~~~eA~~~~~~Al~~~~---~~g~~~~~a~~l~~lg 119 (273)
...|...|..+++.- -..+...+|.||... |++.|+.+|+.|..-+. ..| -..+...+|
T Consensus 228 ~~~a~~~~~~~a~~g--------~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~----~~~a~~~lg 295 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG--------HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG----LPPAQYGLG 295 (552)
T ss_pred hhHHHHHHHHHHhhc--------chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc----CCccccHHH
Confidence 345555665555432 234556678887554 89999999999988422 122 223577889
Q ss_pred HHHHhcC-----CHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHhccchhhhc
Q 024043 120 ELYESEH-----NIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE---QYHKSIEIYEEIARQSLNNNLLKYG 191 (273)
Q Consensus 120 ~~~~~~g-----~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g---~y~~A~~~~~~~~~~~~~~~~~~~~ 191 (273)
.+|.... ++..|+.+|.+|.+. +. ..+...+|.++..-. ++.+|.++|..+.. .|
T Consensus 296 ~~Y~~g~~~~~~d~~~A~~~~~~aA~~----g~----~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~---------~G 358 (552)
T KOG1550|consen 296 RLYLQGLGVEKIDYEKALKLYTKAAEL----GN----PDAQYLLGVLYETGTKERDYRRAFEYYSLAAK---------AG 358 (552)
T ss_pred HHHhcCCCCccccHHHHHHHHHHHHhc----CC----chHHHHHHHHHHcCCccccHHHHHHHHHHHHH---------cC
Confidence 9988842 677888888888765 22 355777888876544 67899999999863 23
Q ss_pred hhhHHHHHHHHHHh-c---CCHHHHHHHHHHH
Q 024043 192 VKGHLLNAGICQLC-K---GDVVAITNALERY 219 (273)
Q Consensus 192 ~~~~~~~~gl~~l~-~---gd~~~A~~~~~~~ 219 (273)
....++++++|+.. . -+...|...+.+.
T Consensus 359 ~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~a 390 (552)
T KOG1550|consen 359 HILAIYRLALCYELGLGVERNLELAFAYYKKA 390 (552)
T ss_pred ChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHH
Confidence 44456677777543 2 2566666555553
No 248
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.74 E-value=1.1 Score=37.98 Aligned_cols=86 Identities=16% Similarity=0.189 Sum_probs=55.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHhccchhhhchhhH
Q 024043 120 ELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAE----LEQYHKSIEIYEEIARQSLNNNLLKYGVKGH 195 (273)
Q Consensus 120 ~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~----~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~ 195 (273)
.++.++.+.+-|....++..++-+ -.++.++|..++. .+++..|.-+|++.-.+.... ...
T Consensus 145 qI~lk~~r~d~A~~~lk~mq~ide--------d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T-------~~l 209 (299)
T KOG3081|consen 145 QILLKMHRFDLAEKELKKMQQIDE--------DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPT-------PLL 209 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHccch--------HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCC-------hHH
Confidence 344444566666666666555533 2345566665544 347999999999875432222 223
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043 196 LLNAGICQLCKGDVVAITNALERYQ 220 (273)
Q Consensus 196 ~~~~gl~~l~~gd~~~A~~~~~~~~ 220 (273)
+.....||+.+|+++.|...++...
T Consensus 210 lnG~Av~~l~~~~~eeAe~lL~eaL 234 (299)
T KOG3081|consen 210 LNGQAVCHLQLGRYEEAESLLEEAL 234 (299)
T ss_pred HccHHHHHHHhcCHHHHHHHHHHHH
Confidence 4455678999999999999888754
No 249
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.73 E-value=0.49 Score=39.54 Aligned_cols=104 Identities=13% Similarity=0.057 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc------CCcccH------HHHHHHHHHHHHHhcCHHHHHHHHHH
Q 024043 110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE------EVTTSA------NQCKQKVAQYAAELEQYHKSIEIYEE 177 (273)
Q Consensus 110 ~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~------~~~~~~------~~~~~~~a~~~~~~g~y~~A~~~~~~ 177 (273)
.+..++..-|.-+...|+|.+|...|..|+...+.. +++.+. .-.+.+++.|+...|+|-++++....
T Consensus 176 kav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~se 255 (329)
T KOG0545|consen 176 KAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSE 255 (329)
T ss_pred hhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHH
Confidence 345567777888888899999999999999887642 333222 34578888999999999999999999
Q ss_pred HHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043 178 IARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ 220 (273)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~ 220 (273)
++...+++ ++ ++++-+-+|....+..+|+.-|....
T Consensus 256 iL~~~~~n------vK-A~frRakAhaa~Wn~~eA~~D~~~vL 291 (329)
T KOG0545|consen 256 ILRHHPGN------VK-AYFRRAKAHAAVWNEAEAKADLQKVL 291 (329)
T ss_pred HHhcCCch------HH-HHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 98765554 33 56777777777778888877776654
No 250
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=95.71 E-value=0.44 Score=49.31 Aligned_cols=149 Identities=16% Similarity=0.110 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-----C--------------------
Q 024043 33 ADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-----S-------------------- 87 (273)
Q Consensus 33 ~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-----~-------------------- 87 (273)
.......|++|..+|+|.+|+..|..|+++.+..+|+-..|.+++.++.|..-. +
T Consensus 242 gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~~~~ 321 (1185)
T PF08626_consen 242 GRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSSTSSS 321 (1185)
T ss_pred hhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCccCcc
Confidence 455666799999999999999999999999999999999999998877653111 1
Q ss_pred --------------------------------HHHHHHHHHHHHHHHHhcC-------ChhHHHHHHHHHHHHHHhcC--
Q 024043 88 --------------------------------SNEAISCLEQAVNMFCDIG-------RLSMAARYYKEIAELYESEH-- 126 (273)
Q Consensus 88 --------------------------------~~eA~~~~~~Al~~~~~~g-------~~~~~a~~l~~lg~~~~~~g-- 126 (273)
+..-.+.+++++.+|.+.. -..-...+..+++.++....
T Consensus 322 s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~~~~ 401 (1185)
T PF08626_consen 322 SPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQHLS 401 (1185)
T ss_pred CcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHhhcc
Confidence 1122234555566655543 22234566667777776666
Q ss_pred ------------------CHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 024043 127 ------------------NIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQ 181 (273)
Q Consensus 127 ------------------~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~ 181 (273)
.-.++.++..+|..+.-..=.......++..+|.+|..+|-..++.=+.+.++..
T Consensus 402 ~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~ 474 (1185)
T PF08626_consen 402 DNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDLSVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQ 474 (1185)
T ss_pred cchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 6788888888888876533234555688899999999999887777777666533
No 251
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.62 E-value=0.02 Score=31.47 Aligned_cols=31 Identities=13% Similarity=0.326 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 024043 114 YYKEIAELYESEHNIEQTIVFFEKAADMFQN 144 (273)
Q Consensus 114 ~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~ 144 (273)
++.++|.++...|++++|+..|++.++-|+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 6778899999999999999999999887764
No 252
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=95.58 E-value=0.23 Score=42.62 Aligned_cols=131 Identities=11% Similarity=0.136 Sum_probs=82.9
Q ss_pred HHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHhccCCcccHHH
Q 024043 76 YVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYES-EHNIEQTIVFFEKAADMFQNEEVTTSANQ 153 (273)
Q Consensus 76 ~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~-~g~~~~A~~~y~~Al~~~~~~~~~~~~~~ 153 (273)
|.......++. ..+.|...|.+|. +.+. ..-.+|...|.+-.. .++.+.|...|+.++..|... ..
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~----~~~~--~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~------~~ 71 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRAR----KDKR--CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSD------PD 71 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----CCCC--S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-------HH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHH----cCCC--CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCC------HH
Confidence 33444444444 6677888888885 2222 222467777888444 577888999999999998654 35
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 024043 154 CKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDI 222 (273)
Q Consensus 154 ~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~l 222 (273)
.+..+.+.+...++.+.|..+|++++...... ...+..|.+...--...||........+++..+
T Consensus 72 ~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~----~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 72 FWLEYLDFLIKLNDINNARALFERAISSLPKE----KQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCH----HHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcCch----hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 67788888999999999999999997432221 112223333333334568888888887777543
No 253
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.52 E-value=0.043 Score=31.85 Aligned_cols=30 Identities=17% Similarity=0.248 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 024043 152 NQCKQKVAQYAAELEQYHKSIEIYEEIARQ 181 (273)
Q Consensus 152 ~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~ 181 (273)
+.++.++|.+|..+|+|++|..++++++..
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 467999999999999999999999999643
No 254
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=95.48 E-value=1.1 Score=38.36 Aligned_cols=134 Identities=19% Similarity=0.242 Sum_probs=91.9
Q ss_pred CCCHHHHHHHHHHHHH------------HHHH----cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc---
Q 024043 26 GSKYEDAADLFDKAAN------------SFKL----AKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT--- 86 (273)
Q Consensus 26 ~~~~~~A~~~~~~a~~------------~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~--- 86 (273)
.+++..+...+..+.. +|.. ..++.+|++.|..+++. | ......++|.+|...
T Consensus 54 ~~~~~~a~~~~~~a~~~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~----g----~~~a~~~lg~~~~~G~gv 125 (292)
T COG0790 54 PPDYAKALKSYEKAAELGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAAD----G----LAEALFNLGLMYANGRGV 125 (292)
T ss_pred cccHHHHHHHHHHhhhcCChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhc----c----cHHHHHhHHHHHhcCCCc
Confidence 4899999999988763 1111 23466677766643322 2 234566789998774
Q ss_pred --CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHHHhccCCcccHHHHHHH
Q 024043 87 --SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEH-------NIEQTIVFFEKAADMFQNEEVTTSANQCKQK 157 (273)
Q Consensus 87 --~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g-------~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~ 157 (273)
|+.+|..+|++|... |+... +.+...+|.+|..-. +..+|+.+|.+|.+.. ...+...
T Consensus 126 ~~d~~~A~~~~~~Aa~~----g~~~a-~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--------~~~a~~~ 192 (292)
T COG0790 126 PLDLVKALKYYEKAAKL----GNVEA-ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--------NPDAQLL 192 (292)
T ss_pred ccCHHHHHHHHHHHHHc----CChhH-HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--------CHHHHHH
Confidence 899999999999764 44333 556788888888721 2336777777777664 3466788
Q ss_pred HHHHHHH----hcCHHHHHHHHHHHHH
Q 024043 158 VAQYAAE----LEQYHKSIEIYEEIAR 180 (273)
Q Consensus 158 ~a~~~~~----~g~y~~A~~~~~~~~~ 180 (273)
+|.+|.. ..++.+|+..|.++..
T Consensus 193 lg~~y~~G~Gv~~d~~~A~~wy~~Aa~ 219 (292)
T COG0790 193 LGRMYEKGLGVPRDLKKAFRWYKKAAE 219 (292)
T ss_pred HHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 8887765 2389999999999964
No 255
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=95.40 E-value=0.075 Score=46.30 Aligned_cols=98 Identities=17% Similarity=0.131 Sum_probs=77.0
Q ss_pred HHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHH
Q 024043 76 YVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQC 154 (273)
Q Consensus 76 ~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~ 154 (273)
+-+-|+-|.+. .|++|++||.+++.++.-+- ..+.|-+..|..+..+..|-.-+..|+.+-+ .-..+
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~Np------V~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~------~Y~KA 167 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNP------VYHINRALAYLKQKSFAQAEEDCEAAIALDK------LYVKA 167 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCc------cchhhHHHHHHHHHHHHHHHHhHHHHHHhhH------HHHHH
Confidence 44567777666 99999999999999887443 3677788888888899999999999988854 33466
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043 155 KQKVAQYAAELEQYHKSIEIYEEIARQSLNN 185 (273)
Q Consensus 155 ~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~ 185 (273)
|.+.+.....+|...+|-+-++.++...+.+
T Consensus 168 YSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 168 YSRRMQARESLGNNMEAKKDCETVLALEPKN 198 (536)
T ss_pred HHHHHHHHHHHhhHHHHHHhHHHHHhhCccc
Confidence 7788888888999999999998887554443
No 256
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=95.40 E-value=0.57 Score=41.56 Aligned_cols=125 Identities=10% Similarity=-0.002 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCChhHHHH
Q 024043 34 DLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAAR 113 (273)
Q Consensus 34 ~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~eA~~~~~~Al~~~~~~g~~~~~a~ 113 (273)
++-...+.-+-.+|+.++|.+....++.- ..++. +.....+..-.++..=+...++.+.-. ++.. .
T Consensus 264 ~l~~~~a~~li~l~~~~~A~~~i~~~Lk~---~~D~~-----L~~~~~~l~~~d~~~l~k~~e~~l~~h---~~~p---~ 329 (400)
T COG3071 264 ELVVAYAERLIRLGDHDEAQEIIEDALKR---QWDPR-----LCRLIPRLRPGDPEPLIKAAEKWLKQH---PEDP---L 329 (400)
T ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHh---ccChh-----HHHHHhhcCCCCchHHHHHHHHHHHhC---CCCh---h
Confidence 33344456667778888887777666543 33332 222222222225665555555555433 3222 6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 024043 114 YYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIA 179 (273)
Q Consensus 114 ~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~ 179 (273)
.+..+|.++...+.+.+|..+++.|+..- .....+..+|.++.++|+..+|-.++++++
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~-------~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLR-------PSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcC-------CChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 89999999999999999999999888763 224568889999999999999999999986
No 257
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.36 E-value=0.86 Score=40.69 Aligned_cols=159 Identities=12% Similarity=0.145 Sum_probs=100.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHH
Q 024043 95 LEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEI 174 (273)
Q Consensus 95 ~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~ 174 (273)
++.=++-|+.++-....-+++..+|..|...|+.+.|+++|-++-+.-...+ .....+.++-.|.+.+|+|..-..+
T Consensus 133 L~~eLk~yK~n~iKEsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~k---hvInm~ln~i~VSI~~~nw~hv~sy 209 (466)
T KOG0686|consen 133 LDNELKSYKDNLIKESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAK---HVINMCLNLILVSIYMGNWGHVLSY 209 (466)
T ss_pred HHHHHHHhhcchhhHHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchH---HHHHHHHHHHHHHHhhcchhhhhhH
Confidence 4444566666666666678899999999999999999999999877765443 3345667777888889999887777
Q ss_pred HHHHHHHH-hccchh-hhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH------------------HHHHHHhhcCHhHH
Q 024043 175 YEEIARQS-LNNNLL-KYGVKGHLLNAGICQLCKGDVVAITNALERYQ------------------DIAASMDEEDIAKF 234 (273)
Q Consensus 175 ~~~~~~~~-~~~~~~-~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~------------------~ll~a~~~~d~~~~ 234 (273)
-.++.... ....+. ....+ ..--+|++++..+++..|..+|-... ..+.|+..-|...+
T Consensus 210 ~~~A~st~~~~~~~~q~v~~k-l~C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~L 288 (466)
T KOG0686|consen 210 ISKAESTPDANENLAQEVPAK-LKCAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDL 288 (466)
T ss_pred HHHHHhCchhhhhHHHhcCcc-hHHHHHHHHHHHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHH
Confidence 76664220 000010 11111 22235888999888887766654311 23445545555444
Q ss_pred HHHH---HhhhccCCCchhHHHHHHH
Q 024043 235 TDVV---KEFDSMTPLDPWKTTLLLR 257 (273)
Q Consensus 235 ~~~~---~~~~~~~~ld~~~~~~l~~ 257 (273)
...+ ..|..+..|+|-+..+|-+
T Consensus 289 k~~vi~n~~Fk~flel~Pqlr~il~~ 314 (466)
T KOG0686|consen 289 KLNVIKNESFKLFLELEPQLREILFK 314 (466)
T ss_pred HHHHHcchhhhhHHhcChHHHHHHHH
Confidence 4222 4466667777777655543
No 258
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=95.31 E-value=1.8 Score=37.83 Aligned_cols=190 Identities=11% Similarity=0.149 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHH
Q 024043 53 GATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQT 131 (273)
Q Consensus 53 ~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A 131 (273)
.+.|..-..-++..=++......+.... +.. |.++|+++.++..+-......+.....+...+|.++...|+..++
T Consensus 58 l~lY~NFvsefe~kINplslvei~l~~~---~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~ 134 (380)
T KOG2908|consen 58 LQLYLNFVSEFETKINPLSLVEILLVVS---EQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEI 134 (380)
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHH---HHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHH
Confidence 3444444444443334544444433222 222 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCC-cccHHHHHHHHHHHHH-HhcCHHHHHHHHHHHH-HHHhccchhhhchhhHHHHHHHHHHhcCC
Q 024043 132 IVFFEKAADMFQNEEV-TTSANQCKQKVAQYAA-ELEQYHKSIEIYEEIA-RQSLNNNLLKYGVKGHLLNAGICQLCKGD 208 (273)
Q Consensus 132 ~~~y~~Al~~~~~~~~-~~~~~~~~~~~a~~~~-~~g~y~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~gl~~l~~gd 208 (273)
.+.....-.+...... +...-..+..++.-|. ..|++...-...-+-+ ...+.+ .+...-....+-+|+.-+ .||
T Consensus 135 kk~ldd~~~~ld~~~~v~~~Vh~~fY~lssqYyk~~~d~a~yYr~~L~YL~~~d~~~-l~~se~~~lA~~L~~aAL-LGe 212 (380)
T KOG2908|consen 135 KKLLDDLKSMLDSLDGVTSNVHSSFYSLSSQYYKKIGDFASYYRHALLYLGCSDIDD-LSESEKQDLAFDLSLAAL-LGE 212 (380)
T ss_pred HHHHHHHHHHHhcccCCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHhccccccc-cCHHHHHHHHHHHHHHHH-hcc
Confidence 9999988887776554 3435555666665444 4566655444333322 111111 111111111222333211 222
Q ss_pred ----HHH--HHHHHHH--------HHHHHHHHhhcCHhHHHHHHHhhhccCCC
Q 024043 209 ----VVA--ITNALER--------YQDIAASMDEEDIAKFTDVVKEFDSMTPL 247 (273)
Q Consensus 209 ----~~~--A~~~~~~--------~~~ll~a~~~~d~~~~~~~~~~~~~~~~l 247 (273)
+.. +.-.++. ..+++-|++.||..+|.+....+..+--|
T Consensus 213 ~iyNfGELL~HPilesL~gT~~eWL~dll~Afn~Gdl~~f~~l~~~~~~~p~L 265 (380)
T KOG2908|consen 213 NIYNFGELLAHPILESLKGTNREWLKDLLIAFNSGDLKRFESLKGVWGKQPDL 265 (380)
T ss_pred ccccHHHHHhhHHHHHhcCCcHHHHHHHHHHhccCCHHHHHHHHHHhccCchH
Confidence 111 1112222 22788899999999999999988773334
No 259
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.28 E-value=1.2 Score=42.57 Aligned_cols=109 Identities=15% Similarity=0.156 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHH------HH---HhcCChhHHHH-------HHHHHHHHHHhcCCHHHH
Q 024043 69 KHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVN------MF---CDIGRLSMAAR-------YYKEIAELYESEHNIEQT 131 (273)
Q Consensus 69 ~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~------~~---~~~g~~~~~a~-------~l~~lg~~~~~~g~~~~A 131 (273)
..+.-.++.++|..+... ..++|.++|.+.-. .+ ...|+....++ .+-.+|..+...|.-++|
T Consensus 792 D~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qA 871 (1189)
T KOG2041|consen 792 DEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQA 871 (1189)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHH
Confidence 445556677778777666 77777777765411 11 11122222222 344666667666777777
Q ss_pred HHHHHH-------------------HHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 024043 132 IVFFEK-------------------AADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEI 178 (273)
Q Consensus 132 ~~~y~~-------------------Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~ 178 (273)
++.|-+ |+++.....-+ .....+-+-+.-+...++.-+||+.++++
T Consensus 872 V~a~Lr~s~pkaAv~tCv~LnQW~~avelaq~~~l~-qv~tliak~aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 872 VEAYLRRSLPKAAVHTCVELNQWGEAVELAQRFQLP-QVQTLIAKQAAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred HHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhccch-hHHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence 766643 44444433222 22222233334455567888888888776
No 260
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.21 E-value=0.27 Score=41.01 Aligned_cols=108 Identities=12% Similarity=0.132 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc------CCHH------HHHHHHHHHHHHHhcc-CHHHHHHHHH
Q 024043 30 EDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKL------ESKH------EAAQAYVDAAHCYKKT-SSNEAISCLE 96 (273)
Q Consensus 30 ~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~------~aa~~~~~~~~~~~~~-~~~eA~~~~~ 96 (273)
-+|.....+-||-+...|+|.+|..+|..|+.+.+.+ |++. -..-.+.|...|+... +|-+++++..
T Consensus 175 mkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~s 254 (329)
T KOG0545|consen 175 MKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCS 254 (329)
T ss_pred hhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHH
Confidence 4577888888999999999999999999999988743 2322 1223456777777666 7888888777
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 024043 97 QAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQ 143 (273)
Q Consensus 97 ~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~ 143 (273)
..+..+..+ -++|..-|.++..-=+..+|..-+.+++++-.
T Consensus 255 eiL~~~~~n------vKA~frRakAhaa~Wn~~eA~~D~~~vL~ldp 295 (329)
T KOG0545|consen 255 EILRHHPGN------VKAYFRRAKAHAAVWNEAEAKADLQKVLELDP 295 (329)
T ss_pred HHHhcCCch------HHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCh
Confidence 776655433 34677777777666677777777777777644
No 261
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.17 E-value=0.44 Score=41.62 Aligned_cols=150 Identities=17% Similarity=0.077 Sum_probs=98.0
Q ss_pred CCC-CCHHHHHHHHHHHH--------------HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-C
Q 024043 24 LFG-SKYEDAADLFDKAA--------------NSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-S 87 (273)
Q Consensus 24 ~~~-~~~~~A~~~~~~a~--------------~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~ 87 (273)
.|+ |++.+|+....+.. ..+...|+.+.-.+.+++.+.-. ..+.+--.-+.--.+.+..+. -
T Consensus 113 ~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w--n~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW--NADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc--CCCCcHHHHHHHHHHhhHHHhcc
Confidence 476 77777777666653 23444566666666555544321 111111111222233344444 7
Q ss_pred HHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcC
Q 024043 88 SNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQ 167 (273)
Q Consensus 88 ~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~ 167 (273)
|++|.+.-++|+++.+-. +.+-...+.+++..|++.++.++..+.-+..++.. ..+...+-..|.++++.+.
T Consensus 191 y~dAEk~A~ralqiN~~D------~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~--mlasHNyWH~Al~~iE~ae 262 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRFD------CWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSW--MLASHNYWHTALFHIEGAE 262 (491)
T ss_pred chhHHHHHHhhccCCCcc------hHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhh--HHHhhhhHHHHHhhhcccc
Confidence 899999999999886532 33555678888888999999999988776666322 3455677888999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 024043 168 YHKSIEIYEEIARQSL 183 (273)
Q Consensus 168 y~~A~~~~~~~~~~~~ 183 (273)
|+.|+++|.+-+-.++
T Consensus 263 ye~aleIyD~ei~k~l 278 (491)
T KOG2610|consen 263 YEKALEIYDREIWKRL 278 (491)
T ss_pred hhHHHHHHHHHHHHHh
Confidence 9999999999874433
No 262
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.99 E-value=0.054 Score=49.22 Aligned_cols=88 Identities=8% Similarity=-0.001 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh-cc--C---------CcccHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 024043 111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQ-NE--E---------VTTSANQCKQKVAQYAAELEQYHKSIEIYEEI 178 (273)
Q Consensus 111 ~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~-~~--~---------~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~ 178 (273)
....++|+|-++...|.|.-++.+|.+|+.-+. +. | .......++.++|..|...|++-.|.++|.++
T Consensus 282 ~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~a 361 (696)
T KOG2471|consen 282 SCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKA 361 (696)
T ss_pred hheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHH
Confidence 345678999999999999999999999996222 11 1 01123478899999999999999999999999
Q ss_pred HHHHhccchhhhchhhHHHHHHHHHHh
Q 024043 179 ARQSLNNNLLKYGVKGHLLNAGICQLC 205 (273)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~gl~~l~ 205 (273)
......+|. .|+++..|+..
T Consensus 362 v~vfh~nPr-------lWLRlAEcCim 381 (696)
T KOG2471|consen 362 VHVFHRNPR-------LWLRLAECCIM 381 (696)
T ss_pred HHHHhcCcH-------HHHHHHHHHHH
Confidence 877666653 56777666543
No 263
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=94.67 E-value=1.2 Score=36.08 Aligned_cols=60 Identities=17% Similarity=0.266 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHH
Q 024043 110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSI 172 (273)
Q Consensus 110 ~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~ 172 (273)
..+.....+|..|.+ -++++++..+.++++++....+.. .+++..++.++..+|+++.|-
T Consensus 139 ~t~elq~aLAtyY~k-rD~~Kt~~ll~~~L~l~~~~~~~n--~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 139 ETAELQYALATYYTK-RDPEKTIQLLLRALELSNPDDNFN--PEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CCHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhcCCCCCCC--HHHHHHHHHHHHHhcchhhhh
Confidence 347788899999987 899999999999999998775433 578999999999999999874
No 264
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=94.62 E-value=2.5 Score=35.92 Aligned_cols=114 Identities=13% Similarity=-0.020 Sum_probs=72.7
Q ss_pred HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHh
Q 024043 45 LAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYES 124 (273)
Q Consensus 45 ~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~ 124 (273)
.+++|++|++.....+...-+.+....++..-.-+.++|.+. +...... ...++..++..
T Consensus 2 ~~kky~eAidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~-------------------~~~~~~~-~~~rl~~l~~~ 61 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSGALILLKHGQYGSGADLALLLIEVYEKS-------------------EDPVDEE-SIARLIELISL 61 (260)
T ss_dssp HTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-------------------T---SHH-HHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHc-------------------CCCCCHH-HHHHHHHHHHh
Confidence 467899999999998888888887766666665556666543 2211111 22344555554
Q ss_pred cCC-HHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 024043 125 EHN-IEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEI 178 (273)
Q Consensus 125 ~g~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~ 178 (273)
... -.+-..+..+|+......+.+.+....+..+|..+.+-|+|.+|..+|-..
T Consensus 62 ~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~ 116 (260)
T PF04190_consen 62 FPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLG 116 (260)
T ss_dssp S-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS
T ss_pred CCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhc
Confidence 422 223567778888888444556788899999999999999999999888554
No 265
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=94.61 E-value=0.043 Score=28.92 Aligned_cols=28 Identities=14% Similarity=0.377 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 024043 114 YYKEIAELYESEHNIEQTIVFFEKAADM 141 (273)
Q Consensus 114 ~l~~lg~~~~~~g~~~~A~~~y~~Al~~ 141 (273)
++..+|.++...+++++|+.+|++++.+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 4556666666666666666666666654
No 266
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.60 E-value=3.7 Score=37.78 Aligned_cols=153 Identities=16% Similarity=0.121 Sum_probs=104.3
Q ss_pred CHHHHHHHHHHHHHHHhc-c-CHHHHHHHHHHHHHHHHhcCCh-hHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHh
Q 024043 68 SKHEAAQAYVDAAHCYKK-T-SSNEAISCLEQAVNMFCDIGRL-SMAARYYKEIAELYESEH-NIEQTIVFFEKAADMFQ 143 (273)
Q Consensus 68 ~~~~aa~~~~~~~~~~~~-~-~~~eA~~~~~~Al~~~~~~g~~-~~~a~~l~~lg~~~~~~g-~~~~A~~~y~~Al~~~~ 143 (273)
...-.|++..++|.+... . +.+.|..++++|..+....+.+ +---.+..-++.+|.... ....+....++|+++.+
T Consensus 41 s~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq 120 (629)
T KOG2300|consen 41 SFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQ 120 (629)
T ss_pred hHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhc
Confidence 344566667777776644 4 8899999999999999999998 666778888899998888 77888999999998865
Q ss_pred ccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHH--HHHHHHhcCCHHHHHHHHHHHHH
Q 024043 144 NEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLN--AGICQLCKGDVVAITNALERYQD 221 (273)
Q Consensus 144 ~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~--~gl~~l~~gd~~~A~~~~~~~~~ 221 (273)
+.+.+....+.+++.++.-..++..|++++.- +....+.....| . ..++. .+.++....|...-...++....
T Consensus 121 --~~p~wsckllfQLaql~~idkD~~sA~elLav-ga~sAd~~~~~y-l-r~~ftls~~~ll~me~d~~dV~~ll~~~~q 195 (629)
T KOG2300|consen 121 --SVPYWSCKLLFQLAQLHIIDKDFPSALELLAV-GAESADHICFPY-L-RMLFTLSMLMLLIMERDDYDVEKLLQRCGQ 195 (629)
T ss_pred --CCchhhHHHHHHHHHHHhhhccchhHHHHHhc-cccccchhhhHH-H-HHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 45888888889999999999999999998432 111111000001 0 11222 23344445565566666666655
Q ss_pred HHHH
Q 024043 222 IAAS 225 (273)
Q Consensus 222 ll~a 225 (273)
+.+.
T Consensus 196 i~~n 199 (629)
T KOG2300|consen 196 IWQN 199 (629)
T ss_pred HHhc
Confidence 5543
No 267
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=94.59 E-value=0.073 Score=30.82 Aligned_cols=32 Identities=28% Similarity=0.399 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 024043 113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQN 144 (273)
Q Consensus 113 ~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~ 144 (273)
.++..+|.+-...++|++|++-|++|+++.++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~ 33 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEE 33 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 35556666666666666666666666666543
No 268
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=94.56 E-value=0.83 Score=46.38 Aligned_cols=151 Identities=12% Similarity=0.061 Sum_probs=118.1
Q ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHH-
Q 024043 28 KYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLE--SKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFC- 103 (273)
Q Consensus 28 ~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~- 103 (273)
...+-..+|...+.++...+++++|+..-.+|.-+.++.- +....+..|.+++...... ....|+..+.++..+..
T Consensus 968 ~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~L 1047 (1236)
T KOG1839|consen 968 LHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLL 1047 (1236)
T ss_pred cchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhcc
Confidence 3445667788889999999999999999999998887543 6677888888888766555 78888888888877653
Q ss_pred hcC-ChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCC--cccHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 024043 104 DIG-RLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEV--TTSANQCKQKVAQYAAELEQYHKSIEIYEEI 178 (273)
Q Consensus 104 ~~g-~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~--~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~ 178 (273)
..| +....+..-.+++.++...++++.|+.+.+.|+.+.....- ...-+.++..++.++...+++..|+......
T Consensus 1048 s~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t 1125 (1236)
T KOG1839|consen 1048 SSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVT 1125 (1236)
T ss_pred ccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhH
Confidence 222 46667778899999988889999999999999998776532 2344577788888888888888888777665
No 269
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=94.53 E-value=3.4 Score=37.09 Aligned_cols=172 Identities=12% Similarity=0.126 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHH
Q 024043 34 DLFDKAANSFKLAKSWDKAGATYVKLANCHLKLE-SKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMA 111 (273)
Q Consensus 34 ~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~ 111 (273)
.+|.-...+|...++...-..++..-+... .++ +..+.+...+-+..+|..- .|+.|-..-.++ .|.+.......
T Consensus 170 k~~fy~~l~~E~~~~l~~~rs~l~~~lrtA-tLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~--~~pe~~snne~ 246 (493)
T KOG2581|consen 170 KLYFYLYLSYELEGRLADIRSFLHALLRTA-TLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKS--VYPEAASNNEW 246 (493)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHh-hhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcc--cCccccccHHH
Confidence 344445667777777666555555554443 444 6777888888788888655 566666555443 24444555588
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHH-HHHHhccchhhh
Q 024043 112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEI-ARQSLNNNLLKY 190 (273)
Q Consensus 112 a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~-~~~~~~~~~~~~ 190 (273)
|+.+.-+|.+..-+++|..|.+++.+|+....+.......-.+...+-.+-.-+|++++=.- |.+. ..++
T Consensus 247 ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf~q~v~k~~ivv~ll~geiPers~-F~Qp~~~ks-------- 317 (493)
T KOG2581|consen 247 ARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGFRQQVNKLMIVVELLLGEIPERSV-FRQPGMRKS-------- 317 (493)
T ss_pred HHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhHHHHHHHHHHHHHHHcCCCcchhh-hcCccHHHH--------
Confidence 99999999999999999999999999998887643221111222222233345677664322 2221 1111
Q ss_pred chhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043 191 GVKGHLLNAGICQLCKGDVVAITNALERYQ 220 (273)
Q Consensus 191 ~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~ 220 (273)
.. .|+.+.- -...||..+....+++|.
T Consensus 318 -L~-~Yf~Lt~-AVr~gdlkkF~~~leq~k 344 (493)
T KOG2581|consen 318 -LR-PYFKLTQ-AVRLGDLKKFNETLEQFK 344 (493)
T ss_pred -HH-HHHHHHH-HHHHhhHHHHHHHHHHHH
Confidence 11 1222211 124678888888888876
No 270
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.49 E-value=2.7 Score=37.95 Aligned_cols=123 Identities=11% Similarity=-0.010 Sum_probs=101.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHH
Q 024043 24 LFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMF 102 (273)
Q Consensus 24 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~ 102 (273)
.+|+++..-++-.-+-+.++....++..|.....+..--..+..+....+.++..++.++.+. .+-.+..+.-.++...
T Consensus 264 ~~g~d~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k~~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~ 343 (482)
T KOG4322|consen 264 WFGGDYQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDKGCNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKR 343 (482)
T ss_pred hhcchHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 456788888876666788888888899999988888877777778888888999999999877 6677777777777777
Q ss_pred HhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC
Q 024043 103 CDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEE 146 (273)
Q Consensus 103 ~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~ 146 (273)
.+-......+..-..++..+.-+|.+++|+.....|+...-..|
T Consensus 344 sey~ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~G 387 (482)
T KOG4322|consen 344 SEYSLDYLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQG 387 (482)
T ss_pred HHhccchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhcc
Confidence 77777788888888899999999999999999999998876554
No 271
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=94.48 E-value=0.13 Score=40.83 Aligned_cols=52 Identities=25% Similarity=0.316 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHhcc
Q 024043 88 SNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE----HNIEQTIVFFEKAADMFQNE 145 (273)
Q Consensus 88 ~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~----g~~~~A~~~y~~Al~~~~~~ 145 (273)
+++|++-|++|+.+-+...+ ++..+|.+|..+ .+..+|-++|++|.+.|+..
T Consensus 51 iedAisK~eeAL~I~P~~hd------Alw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkA 106 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHD------ALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKA 106 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HH------HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHH------HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHH
Confidence 45666667777766655443 677777777665 45667777788877777653
No 272
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=94.32 E-value=0.55 Score=40.31 Aligned_cols=130 Identities=11% Similarity=0.145 Sum_probs=90.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-c-CHHHHHHHHHHHHHHHHhcCChhHHHHH
Q 024043 37 DKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKK-T-SSNEAISCLEQAVNMFCDIGRLSMAARY 114 (273)
Q Consensus 37 ~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~-~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~ 114 (273)
.+..+..+..+..+.|...|.+|.. .+. ..-.+|...|.+-.. . ++..|...|+.++..|....+ .
T Consensus 5 i~~m~~~~r~~g~~~aR~vF~~a~~----~~~--~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~------~ 72 (280)
T PF05843_consen 5 IQYMRFMRRTEGIEAARKVFKRARK----DKR--CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPD------F 72 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC----CCC--S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HH------H
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHc----CCC--CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHH------H
Confidence 3445566666678899999999862 111 122467777777433 3 888899999999999876654 4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 024043 115 YKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQ 181 (273)
Q Consensus 115 l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~ 181 (273)
+..-...+...++.+.|...|++++...... .....+|......-..-|+.+....++++....
T Consensus 73 ~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~---~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 73 WLEYLDFLIKLNDINNARALFERAISSLPKE---KQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHCCTSSCH---HHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhcCch---hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4444456667799999999999999773322 213467888888888899999999999888644
No 273
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.25 E-value=2.2 Score=36.13 Aligned_cols=135 Identities=13% Similarity=0.079 Sum_probs=96.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 024043 40 ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEI 118 (273)
Q Consensus 40 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~l 118 (273)
.+++.-.|.|.-..+.+.+..+- ++...-.....+|.+--.. |.+.|..++++.-..............+..+.
T Consensus 184 ~~~llG~kEy~iS~d~~~~vi~~-----~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 184 ANCLLGMKEYVLSVDAYHSVIKY-----YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHhcchhhhhhHHHHHHHHHh-----CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 45555666777777777766652 2222233445566665444 88888888887776666667777778889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043 119 AELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN 185 (273)
Q Consensus 119 g~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~ 185 (273)
+.+|.-..++..|...|.+.+..-. +-...-++-|.|..-+|+...|++..+.+..+.++.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~------~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDP------RNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhheecccchHHHHHHHhhccccCC------CchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 9999999999999999987665422 113456788899999999999999999987655543
No 274
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=93.75 E-value=2.8 Score=33.36 Aligned_cols=85 Identities=12% Similarity=0.127 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHhcCH---HHHHHHHHH-------HHHHHhccchhhhchhhHHHHHHHHHHh----cCCHHHHHHHHH
Q 024043 152 NQCKQKVAQYAAELEQY---HKSIEIYEE-------IARQSLNNNLLKYGVKGHLLNAGICQLC----KGDVVAITNALE 217 (273)
Q Consensus 152 ~~~~~~~a~~~~~~g~y---~~A~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~gl~~l~----~gd~~~A~~~~~ 217 (273)
.+.+.+-|.++.++.++ .++.++++. ++...+.. .+.+.++|.++.. .+|..+|...|+
T Consensus 25 adnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~-------hdAlw~lGnA~ts~A~l~~d~~~A~~~F~ 97 (186)
T PF06552_consen 25 ADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNK-------HDALWCLGNAYTSLAFLTPDTAEAEEYFE 97 (186)
T ss_dssp HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT--------HHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCch-------HHHHHHHHHHHHHHHhhcCChHHHHHHHH
Confidence 57788888877766433 344445544 44444332 2456677777654 357777888888
Q ss_pred HHHHHHHH-H-hhcCHhHHHHHHHhhhc
Q 024043 218 RYQDIAAS-M-DEEDIAKFTDVVKEFDS 243 (273)
Q Consensus 218 ~~~~ll~a-~-~~~d~~~~~~~~~~~~~ 243 (273)
+....+.. + .+.+.+.++..+.-..+
T Consensus 98 kA~~~FqkAv~~~P~ne~Y~ksLe~~~k 125 (186)
T PF06552_consen 98 KATEYFQKAVDEDPNNELYRKSLEMAAK 125 (186)
T ss_dssp HHHHHHHHHHHH-TT-HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHh
Confidence 76644442 2 33555677777766544
No 275
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=93.51 E-value=4.8 Score=36.66 Aligned_cols=128 Identities=14% Similarity=0.060 Sum_probs=93.8
Q ss_pred HHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCH-------HHHHHHHHHHHHHHhcc--
Q 024043 76 YVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNI-------EQTIVFFEKAADMFQNE-- 145 (273)
Q Consensus 76 ~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~-------~~A~~~y~~Al~~~~~~-- 145 (273)
...+|+++.-. ||+-|...|+-+..=|....-+...|-++..+|.++...+.. +....+++.|+..|...
T Consensus 211 ~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~~ 290 (414)
T PF12739_consen 211 MRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSAL 290 (414)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhhc
Confidence 34677777666 999999999999998887777888888888888888877633 47778899999999883
Q ss_pred ---CCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHH
Q 024043 146 ---EVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQ 203 (273)
Q Consensus 146 ---~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~ 203 (273)
..+..+..+....+.++...|.|.+|...+-+.....+.......+..-.+-+++.|+
T Consensus 291 ~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~ 351 (414)
T PF12739_consen 291 PRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCY 351 (414)
T ss_pred cccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhh
Confidence 2234666788888888889999999998888776553322111222333444667777
No 276
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=93.46 E-value=0.15 Score=26.65 Aligned_cols=28 Identities=18% Similarity=0.348 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 024043 153 QCKQKVAQYAAELEQYHKSIEIYEEIAR 180 (273)
Q Consensus 153 ~~~~~~a~~~~~~g~y~~A~~~~~~~~~ 180 (273)
.++..+|.++..+|++++|+..|++++.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 4578899999999999999999998864
No 277
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.39 E-value=0.32 Score=44.40 Aligned_cols=116 Identities=11% Similarity=0.033 Sum_probs=75.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcC-C-HHH--HHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHH---hcC------
Q 024043 41 NSFKLAKSWDKAGATYVKLANCHLKLE-S-KHE--AAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFC---DIG------ 106 (273)
Q Consensus 41 ~~~~~~~~~~~A~~~~~~a~~~~~~~~-~-~~~--aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~---~~g------ 106 (273)
+.+...|++.+|...+...-- ....| - ... .....+++|-++... .|.-+.-+|.+|+.-++ ..|
T Consensus 248 q~eY~~gn~~kA~KlL~~sni-~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~ 326 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNI-HKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKT 326 (696)
T ss_pred HHHHHhcchHHHHHHHHhccc-ccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcc
Confidence 455556666666555443321 11111 0 011 111236788888777 88889999999996332 223
Q ss_pred ---ChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHH
Q 024043 107 ---RLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAA 163 (273)
Q Consensus 107 ---~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~ 163 (273)
........+.|.|..|...|++-.|.+||.+|+..|.... ..|.++|.+.+
T Consensus 327 ~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nP------rlWLRlAEcCi 380 (696)
T KOG2471|consen 327 FTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNP------RLWLRLAECCI 380 (696)
T ss_pred eehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCc------HHHHHHHHHHH
Confidence 1122356899999999999999999999999999997543 56778887643
No 278
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=93.19 E-value=1 Score=30.50 Aligned_cols=34 Identities=15% Similarity=0.331 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 024043 111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQN 144 (273)
Q Consensus 111 ~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~ 144 (273)
.|..+...|.-....|+|++|+.+|.+|++++..
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 3445555666677779999999999999999865
No 279
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=92.96 E-value=1.5 Score=29.85 Aligned_cols=58 Identities=10% Similarity=0.068 Sum_probs=35.1
Q ss_pred CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCC
Q 024043 87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEV 147 (273)
Q Consensus 87 ~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~ 147 (273)
...+|+..++++++-.++ +...=.++.-+..+|...|+|.+.+.+..+=+++.++.++
T Consensus 21 ~~~~Al~~W~~aL~k~~~---~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~eled 78 (80)
T PF10579_consen 21 ETQQALQKWRKALEKITD---REDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELED 78 (80)
T ss_pred hHHHHHHHHHHHHhhcCC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 556666666666655443 2234445556666666667777777766666666665544
No 280
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.85 E-value=2.6 Score=38.76 Aligned_cols=74 Identities=12% Similarity=0.110 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH-------HHHH
Q 024043 152 NQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ-------DIAA 224 (273)
Q Consensus 152 ~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~-------~ll~ 224 (273)
...|.++|+.....|+++-|.++|+++. .+-.+.+.|+..||.+.-.+..+... .+..
T Consensus 347 ~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~n~af~~ 411 (443)
T PF04053_consen 347 PEKWKQLGDEALRQGNIELAEECYQKAK---------------DFSGLLLLYSSTGDREKLSKLAKIAEERGDINIAFQA 411 (443)
T ss_dssp HHHHHHHHHHHHHTTBHHHHHHHHHHCT----------------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhc---------------CccccHHHHHHhCCHHHHHHHHHHHHHccCHHHHHHH
Confidence 3589999999999999999999999873 12345566777888766555554433 4455
Q ss_pred HHhhcCHhHHHHHHHh
Q 024043 225 SMDEEDIAKFTDVVKE 240 (273)
Q Consensus 225 a~~~~d~~~~~~~~~~ 240 (273)
++-.||.+..-+.+.+
T Consensus 412 ~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 412 ALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHT-HHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHH
Confidence 5666777766666654
No 281
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=92.73 E-value=0.28 Score=28.39 Aligned_cols=28 Identities=21% Similarity=0.342 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 024043 153 QCKQKVAQYAAELEQYHKSIEIYEEIAR 180 (273)
Q Consensus 153 ~~~~~~a~~~~~~g~y~~A~~~~~~~~~ 180 (273)
.++..+|.+....++|++|++-|++++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5789999999999999999999999964
No 282
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=92.58 E-value=6 Score=33.80 Aligned_cols=145 Identities=17% Similarity=0.135 Sum_probs=93.5
Q ss_pred HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-----CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 024043 45 LAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-----SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIA 119 (273)
Q Consensus 45 ~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-----~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg 119 (273)
..+++..+...+.++.. .++. .....++.+|... ++.+|+.+|+.+.+ .| .+....++|
T Consensus 53 ~~~~~~~a~~~~~~a~~----~~~~----~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~----~g----~~~a~~~lg 116 (292)
T COG0790 53 YPPDYAKALKSYEKAAE----LGDA----AALALLGQMYGAGKGVSRDKTKAADWYRCAAA----DG----LAEALFNLG 116 (292)
T ss_pred ccccHHHHHHHHHHhhh----cCCh----HHHHHHHHHHHhccCccccHHHHHHHHHHHhh----cc----cHHHHHhHH
Confidence 45677888888877776 2222 6777888888766 78889998884432 22 244667799
Q ss_pred HHHHhc----CCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHh----c-C--HHHHHHHHHHHHHHHhccchh
Q 024043 120 ELYESE----HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAEL----E-Q--YHKSIEIYEEIARQSLNNNLL 188 (273)
Q Consensus 120 ~~~~~~----g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~----g-~--y~~A~~~~~~~~~~~~~~~~~ 188 (273)
.+|..- .++.+|..+|.+|.+.--... ..+...+|.+|..- + . ...|+..|.++....
T Consensus 117 ~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a-----~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~------ 185 (292)
T COG0790 117 LMYANGRGVPLDLVKALKYYEKAAKLGNVEA-----ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG------ 185 (292)
T ss_pred HHHhcCCCcccCHHHHHHHHHHHHHcCChhH-----HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc------
Confidence 999883 389999999999987632111 34466777776653 2 2 337888888885322
Q ss_pred hhchhhHHHHHHHHHHh----cCCHHHHHHHHHHH
Q 024043 189 KYGVKGHLLNAGICQLC----KGDVVAITNALERY 219 (273)
Q Consensus 189 ~~~~~~~~~~~gl~~l~----~gd~~~A~~~~~~~ 219 (273)
.....+++|.+|.. .-|..+|..-+...
T Consensus 186 ---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~A 217 (292)
T COG0790 186 ---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKA 217 (292)
T ss_pred ---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHH
Confidence 22345666766533 22666666665553
No 283
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.27 E-value=2.8 Score=39.78 Aligned_cols=147 Identities=12% Similarity=0.142 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHH
Q 024043 88 SNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE-----HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYA 162 (273)
Q Consensus 88 ~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~-----g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~ 162 (273)
..+|..+|+.+.+. |+ ......+|.+|..- .+.+.|+.+++.|++-+...-. ..-..+...+|.+|
T Consensus 228 ~~~a~~~~~~~a~~----g~----~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~-~~~~~a~~~lg~~Y 298 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL----GH----SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAAT-KGLPPAQYGLGRLY 298 (552)
T ss_pred hhHHHHHHHHHHhh----cc----hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHh-hcCCccccHHHHHH
Confidence 35677777766543 33 33556677777663 4899999999999984222111 01123567788888
Q ss_pred HHh----c-CHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcC---CHHHHHHHHHHHH---------HHHHH
Q 024043 163 AEL----E-QYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKG---DVVAITNALERYQ---------DIAAS 225 (273)
Q Consensus 163 ~~~----g-~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~g---d~~~A~~~~~~~~---------~ll~a 225 (273)
.+. . ++..|+.+|.++... +.....+.+|.++..-. |+.+|.+.+.... .+-..
T Consensus 299 ~~g~~~~~~d~~~A~~~~~~aA~~---------g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~ 369 (552)
T KOG1550|consen 299 LQGLGVEKIDYEKALKLYTKAAEL---------GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALC 369 (552)
T ss_pred hcCCCCccccHHHHHHHHHHHHhc---------CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 874 2 789999999998632 23345567787776544 5666666666543 11112
Q ss_pred Hhh--cCHhHHHHHHHhhhccCCCchhHH
Q 024043 226 MDE--EDIAKFTDVVKEFDSMTPLDPWKT 252 (273)
Q Consensus 226 ~~~--~d~~~~~~~~~~~~~~~~ld~~~~ 252 (273)
+.. |-......++.-|.++-...+|.+
T Consensus 370 y~~G~gv~r~~~~A~~~~k~aA~~g~~~A 398 (552)
T KOG1550|consen 370 YELGLGVERNLELAFAYYKKAAEKGNPSA 398 (552)
T ss_pred HHhCCCcCCCHHHHHHHHHHHHHccChhh
Confidence 222 344455566666666666555554
No 284
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=91.92 E-value=14 Score=37.99 Aligned_cols=185 Identities=12% Similarity=0.017 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HcC-CHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhc-
Q 024043 30 EDAADLFDKAANSFKLAKSWDKAGATYVKLANCHL-KLE-SKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI- 105 (273)
Q Consensus 30 ~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~-~~~-~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~- 105 (273)
.+|-+.+ +.|..-...|.|.++.+ .-+++.++. ..| -..+.+.+|..++.++... +.++|+..-++|.-+..+.
T Consensus 930 ~~a~~~~-e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~ 1007 (1236)
T KOG1839|consen 930 SEAKDSP-EQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVL 1007 (1236)
T ss_pred chhhhhh-hhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhc
Confidence 3443333 34666666778888888 777777775 333 2467788999999998777 9999999999998888654
Q ss_pred -CChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc-C-CcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-
Q 024043 106 -GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE-E-VTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQ- 181 (273)
Q Consensus 106 -g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~-~-~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~- 181 (273)
-+.......+.+++......+....|+..+.+|+.+.--. + ++..-+.+..+++.++...++++.|+++.+.+...
T Consensus 1008 g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1008 GKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred cCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3567778899999988888889999999999998875422 1 23444567789999999999999999999999632
Q ss_pred --HhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHH
Q 024043 182 --SLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALER 218 (273)
Q Consensus 182 --~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~ 218 (273)
..+..... ....+..++..+-+.+|+..|......
T Consensus 1088 ~~v~g~~~l~--~~~~~~~~a~l~~s~~dfr~al~~ek~ 1124 (1236)
T KOG1839|consen 1088 KKVLGPKELE--TALSYHALARLFESMKDFRNALEHEKV 1124 (1236)
T ss_pred hhhcCccchh--hhhHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 22221111 112222334445556666655554443
No 285
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=91.68 E-value=0.12 Score=48.08 Aligned_cols=98 Identities=15% Similarity=0.120 Sum_probs=77.4
Q ss_pred HHHHHHHhcc--CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHH
Q 024043 77 VDAAHCYKKT--SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQC 154 (273)
Q Consensus 77 ~~~~~~~~~~--~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~ 154 (273)
.+.+-+|.+. ++..|+.|+.+|+..-....+ ..+.+++.++...|-.-.|-.++.+++.+.- +..-.
T Consensus 610 ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~-----v~~v~la~~~~~~~~~~da~~~l~q~l~~~~------sepl~ 678 (886)
T KOG4507|consen 610 LNEAGLYWRAVGNSTFAIACLQRALNLAPLQQD-----VPLVNLANLLIHYGLHLDATKLLLQALAINS------SEPLT 678 (886)
T ss_pred eecccceeeecCCcHHHHHHHHHHhccChhhhc-----ccHHHHHHHHHHhhhhccHHHHHHHHHhhcc------cCchH
Confidence 3444455544 999999999999876554433 5678999999988988999999999999972 22356
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043 155 KQKVAQYAAELEQYHKSIEIYEEIARQSLNN 185 (273)
Q Consensus 155 ~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~ 185 (273)
+..+|..+..+.+.+.|++.|+.+.....++
T Consensus 679 ~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~ 709 (886)
T KOG4507|consen 679 FLSLGNAYLALKNISGALEAFRQALKLTTKC 709 (886)
T ss_pred HHhcchhHHHHhhhHHHHHHHHHHHhcCCCC
Confidence 7888999999999999999999998665554
No 286
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=91.67 E-value=0.48 Score=29.62 Aligned_cols=34 Identities=18% Similarity=0.239 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccc
Q 024043 153 QCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNN 186 (273)
Q Consensus 153 ~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~ 186 (273)
+|+..+|..+.++|+|++|..+.+.++...++++
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~ 35 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNR 35 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-H
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcH
Confidence 5778888899999999999999999988877764
No 287
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=91.51 E-value=9.9 Score=33.98 Aligned_cols=192 Identities=14% Similarity=0.129 Sum_probs=117.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 024043 40 ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEI 118 (273)
Q Consensus 40 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~l 118 (273)
|-.-...|+|.+|-....++.+.. ..-..+|.-++.+.... |.+.+-.+..++.+. .|+.... ++...
T Consensus 91 gl~~l~eG~~~qAEkl~~rnae~~------e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~---~~~~~l~--v~ltr 159 (400)
T COG3071 91 GLLKLFEGDFQQAEKLLRRNAEHG------EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAEL---AGDDTLA--VELTR 159 (400)
T ss_pred HHHHHhcCcHHHHHHHHHHhhhcC------cchHHHHHHHHHHHHhcccHHHHHHHHHHHhcc---CCCchHH--HHHHH
Confidence 444455678887777666655443 22345666677777655 888888888887654 2332222 45566
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-----------------
Q 024043 119 AELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQ----------------- 181 (273)
Q Consensus 119 g~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~----------------- 181 (273)
+.+....|+++.|..-..+++++-... ..++.-...+|+.+|+|.....+..+....
T Consensus 160 arlll~~~d~~aA~~~v~~ll~~~pr~------~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~ 233 (400)
T COG3071 160 ARLLLNRRDYPAARENVDQLLEMTPRH------PEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWE 233 (400)
T ss_pred HHHHHhCCCchhHHHHHHHHHHhCcCC------hHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHH
Confidence 778888899999999998888775432 355666677888888888777655443110
Q ss_pred -----HhccchhhhchhhHHH--------------HHHHHHHhcCCHHHHHHHHHHHH---------HHHHHHhhcCHhH
Q 024043 182 -----SLNNNLLKYGVKGHLL--------------NAGICQLCKGDVVAITNALERYQ---------DIAASMDEEDIAK 233 (273)
Q Consensus 182 -----~~~~~~~~~~~~~~~~--------------~~gl~~l~~gd~~~A~~~~~~~~---------~ll~a~~~~d~~~ 233 (273)
...+. ..-+.+..|- ....-+...||.+.|.+.+.+.. .++..+.-+|.+.
T Consensus 234 glL~q~~~~~-~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~ 312 (400)
T COG3071 234 GLLQQARDDN-GSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEP 312 (400)
T ss_pred HHHHHHhccc-cchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchH
Confidence 00000 0001111111 11112345678888877776633 5666667788888
Q ss_pred HHHHHHhhhccCCCch
Q 024043 234 FTDVVKEFDSMTPLDP 249 (273)
Q Consensus 234 ~~~~~~~~~~~~~ld~ 249 (273)
...++....+-.+-||
T Consensus 313 l~k~~e~~l~~h~~~p 328 (400)
T COG3071 313 LIKAAEKWLKQHPEDP 328 (400)
T ss_pred HHHHHHHHHHhCCCCh
Confidence 8887777777777666
No 288
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=91.45 E-value=5.1 Score=38.22 Aligned_cols=28 Identities=14% Similarity=0.313 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 024043 152 NQCKQKVAQYAAELEQYHKSIEIYEEIA 179 (273)
Q Consensus 152 ~~~~~~~a~~~~~~g~y~~A~~~~~~~~ 179 (273)
..++...|..+.+..++++|.+.|-+++
T Consensus 804 ~dVy~pyaqwLAE~DrFeEAqkAfhkAG 831 (1081)
T KOG1538|consen 804 DDVYMPYAQWLAENDRFEEAQKAFHKAG 831 (1081)
T ss_pred ccccchHHHHhhhhhhHHHHHHHHHHhc
Confidence 3556666766777777777777776664
No 289
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=91.44 E-value=2.1 Score=32.40 Aligned_cols=73 Identities=16% Similarity=0.226 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccc
Q 024043 110 MAARYYKEIAELYESE---HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNN 186 (273)
Q Consensus 110 ~~a~~l~~lg~~~~~~---g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~ 186 (273)
-...+..+++.++... .+..+-+.+++..+. ...+....+|+.-+|.-+.++++|++++.+....+...++++
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~----~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLK----SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR 105 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhh----hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH
Confidence 3445778888888775 345667777766554 334455568999999999999999999999999887766654
No 290
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=91.36 E-value=0.35 Score=45.09 Aligned_cols=92 Identities=11% Similarity=0.099 Sum_probs=70.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHH
Q 024043 117 EIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHL 196 (273)
Q Consensus 117 ~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (273)
..|..+...|++..|+.|+..|+-...... ...+.++|.++++.|-...|-..+.+++......++ .+
T Consensus 612 ~aglywr~~gn~~~a~~cl~~a~~~~p~~~-----~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl-------~~ 679 (886)
T KOG4507|consen 612 EAGLYWRAVGNSTFAIACLQRALNLAPLQQ-----DVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPL-------TF 679 (886)
T ss_pred cccceeeecCCcHHHHHHHHHHhccChhhh-----cccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCch-------HH
Confidence 344444556999999999999997765433 345789999999999889999999888755433333 45
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 024043 197 LNAGICQLCKGDVVAITNALERYQ 220 (273)
Q Consensus 197 ~~~gl~~l~~gd~~~A~~~~~~~~ 220 (273)
+..|..++...|+.+|.++|.+..
T Consensus 680 ~~~g~~~l~l~~i~~a~~~~~~a~ 703 (886)
T KOG4507|consen 680 LSLGNAYLALKNISGALEAFRQAL 703 (886)
T ss_pred HhcchhHHHHhhhHHHHHHHHHHH
Confidence 567888899999999999998865
No 291
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=91.32 E-value=15 Score=35.63 Aligned_cols=28 Identities=21% Similarity=0.472 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 024043 34 DLFDKAANSFKLAKSWDKAGATYVKLAN 61 (273)
Q Consensus 34 ~~~~~a~~~~~~~~~~~~A~~~~~~a~~ 61 (273)
+.++..|.-|.....|++|.++|.+...
T Consensus 797 ~A~r~ig~~fa~~~~We~A~~yY~~~~~ 824 (1189)
T KOG2041|consen 797 DAFRNIGETFAEMMEWEEAAKYYSYCGD 824 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4555667777777788888888776543
No 292
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=91.15 E-value=12 Score=34.57 Aligned_cols=162 Identities=12% Similarity=0.083 Sum_probs=91.3
Q ss_pred HcCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHH-HHhcc---CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 024043 45 LAKSWDKAGATYVKLANCHLKLE-SKHEAAQAYVDAAH-CYKKT---SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIA 119 (273)
Q Consensus 45 ~~~~~~~A~~~~~~a~~~~~~~~-~~~~aa~~~~~~~~-~~~~~---~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg 119 (273)
..|+.+.-.+.|++|+.-..... .....--.|.=+-. +|.+. |++.+.+.|+.++++.+... ..-|+.+..-|
T Consensus 334 ~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkk--FtFaKiWlmyA 411 (677)
T KOG1915|consen 334 SVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKK--FTFAKIWLMYA 411 (677)
T ss_pred hcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCccc--chHHHHHHHHH
Confidence 35677777777777764332211 11111122222222 23333 88899999999998765332 22223332222
Q ss_pred HHHHh---------------------------------cCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhc
Q 024043 120 ELYES---------------------------------EHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE 166 (273)
Q Consensus 120 ~~~~~---------------------------------~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g 166 (273)
..... +++++.....|++=++.. +....++.+.|.+-..+|
T Consensus 412 ~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~------Pe~c~~W~kyaElE~~Lg 485 (677)
T KOG1915|consen 412 QFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS------PENCYAWSKYAELETSLG 485 (677)
T ss_pred HHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC------hHhhHHHHHHHHHHHHhh
Confidence 22222 244555555555544442 234577888898888999
Q ss_pred CHHHHHHHHHHHHHHHhccchhhhchhhHHHHH-HHHHHhcCCHHHHHHHHHHHH
Q 024043 167 QYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNA-GICQLCKGDVVAITNALERYQ 220 (273)
Q Consensus 167 ~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gl~~l~~gd~~~A~~~~~~~~ 220 (273)
+.+.|..+|+-++.... ....+.+.+. ..--...|.+++|+..++++.
T Consensus 486 dtdRaRaifelAi~qp~------ldmpellwkaYIdFEi~~~E~ekaR~LYerlL 534 (677)
T KOG1915|consen 486 DTDRARAIFELAISQPA------LDMPELLWKAYIDFEIEEGEFEKARALYERLL 534 (677)
T ss_pred hHHHHHHHHHHHhcCcc------cccHHHHHHHhhhhhhhcchHHHHHHHHHHHH
Confidence 99999999988863211 1123333333 222356788999999999876
No 293
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=91.11 E-value=13 Score=34.43 Aligned_cols=134 Identities=10% Similarity=0.059 Sum_probs=75.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhccCC-cccHHHHHHHHHHHH---HHhcCHHHHHHHHHHHHHHHhccchhhhchh
Q 024043 118 IAELYESEHNIEQTIVFFEKAADMFQNEEV-TTSANQCKQKVAQYA---AELEQYHKSIEIYEEIARQSLNNNLLKYGVK 193 (273)
Q Consensus 118 lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~-~~~~~~~~~~~a~~~---~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~ 193 (273)
.-.+.+..|+.++-.+.|++|+.-.+.... ..+...++.-+--++ ....+.+.+..+|+.++..-+.. ++...
T Consensus 328 ylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHk---kFtFa 404 (677)
T KOG1915|consen 328 YLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHK---KFTFA 404 (677)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcc---cchHH
Confidence 334445568999999999999976654321 222223333332222 34578999999999998643332 44444
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHH------HHHHHH-----hhcCHhHHHHHHHhhhccCCCchhHHHHHHH
Q 024043 194 GHLLNAGICQLCKGDVVAITNALERYQ------DIAASM-----DEEDIAKFTDVVKEFDSMTPLDPWKTTLLLR 257 (273)
Q Consensus 194 ~~~~~~gl~~l~~gd~~~A~~~~~~~~------~ll~a~-----~~~d~~~~~~~~~~~~~~~~ld~~~~~~l~~ 257 (273)
..++....--+.+.|...|++.+...- +++..+ ..+..+.++..-..| ...+|-.-..+.+
T Consensus 405 KiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkf---le~~Pe~c~~W~k 476 (677)
T KOG1915|consen 405 KIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKF---LEFSPENCYAWSK 476 (677)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHH---HhcChHhhHHHHH
Confidence 444444444456678888888877643 333322 334455555544444 4444444444443
No 294
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=90.97 E-value=9.3 Score=32.68 Aligned_cols=83 Identities=16% Similarity=0.187 Sum_probs=45.1
Q ss_pred CHHHHHHHHHHHHHHHH--hcCChhHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhc-c---CCc----ccHHHHH
Q 024043 87 SSNEAISCLEQAVNMFC--DIGRLSMAARYYKEIAELYESEH-NIEQTIVFFEKAADMFQN-E---EVT----TSANQCK 155 (273)
Q Consensus 87 ~~~eA~~~~~~Al~~~~--~~g~~~~~a~~l~~lg~~~~~~g-~~~~A~~~y~~Al~~~~~-~---~~~----~~~~~~~ 155 (273)
|++.|..++.|+-.+.. ........+..+.++|.-....+ +++.|+.++++|.++.+. . ... .....++
T Consensus 8 ~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL 87 (278)
T PF08631_consen 8 DLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSIL 87 (278)
T ss_pred CHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHH
Confidence 55555555555554442 11122334556666666666666 777777777777777533 1 110 1223556
Q ss_pred HHHHHHHHHhcCHH
Q 024043 156 QKVAQYAAELEQYH 169 (273)
Q Consensus 156 ~~~a~~~~~~g~y~ 169 (273)
..++.++...+.++
T Consensus 88 ~~La~~~l~~~~~~ 101 (278)
T PF08631_consen 88 RLLANAYLEWDTYE 101 (278)
T ss_pred HHHHHHHHcCCChH
Confidence 66666666665543
No 295
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=90.73 E-value=1.4 Score=37.17 Aligned_cols=94 Identities=12% Similarity=0.105 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHhcc----CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCc
Q 024043 73 AQAYVDAAHCYKKT----SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVT 148 (273)
Q Consensus 73 a~~~~~~~~~~~~~----~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~ 148 (273)
+.+++.+-.|+... -+..|.++..+|+-.....||....+-+-..-+..|....+|+-|.-||.+|..++..+.-+
T Consensus 36 a~~lEk~~~~Fs~~~s~~~~~n~~e~~d~ALm~Ae~r~D~~~IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~d~L~ 115 (368)
T COG5091 36 AACLEKLYFGFSDWHSDATMENAKELLDKALMTAEGRGDRSKIGLVNFRYFVHFFNIKDYELAQSYFKKAKNLYVDDTLP 115 (368)
T ss_pred hhhHHHHHhhhhhhhcccChhhHHHHHHHHHHhhhccCCcceeeeehhhhHHHhhhHHHHHHHHHHHHHHHHHhhcccch
Confidence 44555555555444 68899999999999999999999999999999999999999999999999999999888777
Q ss_pred ccHHHHHHHHHHHHHHhc
Q 024043 149 TSANQCKQKVAQYAAELE 166 (273)
Q Consensus 149 ~~~~~~~~~~a~~~~~~g 166 (273)
.+..+.-..+-...-++.
T Consensus 116 ~We~rLet~L~~~~kkQ~ 133 (368)
T COG5091 116 LWEDRLETKLNKKNKKQK 133 (368)
T ss_pred HHHHHHHHHHhHhhHhhc
Confidence 666555555555555543
No 296
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.60 E-value=3.8 Score=38.96 Aligned_cols=99 Identities=13% Similarity=0.233 Sum_probs=68.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchh
Q 024043 114 YYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVK 193 (273)
Q Consensus 114 ~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~ 193 (273)
.|+..+..+.. .+|.-++++|...+..+..+.....-+...+.++.||..+.+.++|.++++++-.-.+.++.. .
T Consensus 357 LWn~A~~~F~~-~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~----q 431 (872)
T KOG4814|consen 357 LWNTAKKLFKM-EKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLC----Q 431 (872)
T ss_pred HHHhhHHHHHH-HHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHH----H
Confidence 34444555444 889999999999999888765544447888999999999999999999999985433333221 1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043 194 GHLLNAGICQLCKGDVVAITNALERYQ 220 (273)
Q Consensus 194 ~~~~~~gl~~l~~gd~~~A~~~~~~~~ 220 (273)
-+.+ -+-+..|.-.+|..+.....
T Consensus 432 ~~~~---~~~~~E~~Se~AL~~~~~~~ 455 (872)
T KOG4814|consen 432 LLML---QSFLAEDKSEEALTCLQKIK 455 (872)
T ss_pred HHHH---HHHHHhcchHHHHHHHHHHH
Confidence 1112 22345677777777666543
No 297
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=90.53 E-value=0.92 Score=29.87 Aligned_cols=33 Identities=15% Similarity=0.169 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 024043 112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQN 144 (273)
Q Consensus 112 a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~ 144 (273)
|..+.+.|.-....|++++|+.+|.+|++.+..
T Consensus 5 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~ 37 (69)
T PF04212_consen 5 AIELIKKAVEADEAGNYEEALELYKEAIEYLMQ 37 (69)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 344555566667778888888888888888754
No 298
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.44 E-value=0.13 Score=44.77 Aligned_cols=120 Identities=16% Similarity=0.103 Sum_probs=80.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 024043 42 SFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAE 120 (273)
Q Consensus 42 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~ 120 (273)
-+...|.++.|++.|..++++. ...+..|..-+.++.++ .+..|+.-|..|+++-.+.- .-+.--|.
T Consensus 123 eAln~G~~~~ai~~~t~ai~ln------p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa------~~ykfrg~ 190 (377)
T KOG1308|consen 123 EALNDGEFDTAIELFTSAIELN------PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSA------KGYKFRGY 190 (377)
T ss_pred HHhcCcchhhhhcccccccccC------CchhhhcccccceeeeccCCchhhhhhhhhhccCcccc------cccchhhH
Confidence 3445677888888888888774 34566788888888888 89999999999988865442 24555566
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHH
Q 024043 121 LYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIE 173 (273)
Q Consensus 121 ~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~ 173 (273)
....+|+.++|...+..|+.+--..........+.-+.+.+-...++|+++.+
T Consensus 191 A~rllg~~e~aa~dl~~a~kld~dE~~~a~lKeV~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 191 AERLLGNWEEAAHDLALACKLDYDEANSATLKEVFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred HHHHhhchHHHHHHHHHHHhccccHHHHHHHHHhccchhhhhhchhHHHHHHH
Confidence 66777889999999988887643322223333444444445445555555554
No 299
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.27 E-value=6.3 Score=33.68 Aligned_cols=57 Identities=11% Similarity=0.208 Sum_probs=48.6
Q ss_pred CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 024043 87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE 145 (273)
Q Consensus 87 ~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~ 145 (273)
.|++|+..|++.+++-.+.|.+. -+++..+-.+...+|+|++-++.|.+-+......
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWG--FKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSA 98 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWG--FKALKQMIKINFRLGNYKEMMERYKQLLTYIKSA 98 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhH--HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 89999999999999887766643 4578888889999999999999999999887653
No 300
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.92 E-value=0.45 Score=24.74 Aligned_cols=22 Identities=5% Similarity=0.015 Sum_probs=12.5
Q ss_pred HHHHHHHHHHhcCHHHHHHHHH
Q 024043 155 KQKVAQYAAELEQYHKSIEIYE 176 (273)
Q Consensus 155 ~~~~a~~~~~~g~y~~A~~~~~ 176 (273)
...+|.++..+|++++|...++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 4455566666666666655543
No 301
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=89.86 E-value=6.1 Score=28.80 Aligned_cols=91 Identities=16% Similarity=0.109 Sum_probs=50.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-----CHH-------HHHHHHHHHHHHHHhcCChh
Q 024043 42 SFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-----SSN-------EAISCLEQAVNMFCDIGRLS 109 (273)
Q Consensus 42 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-----~~~-------eA~~~~~~Al~~~~~~g~~~ 109 (273)
-+...|++-+|++..+.....+.+..+. .-.+..-|.++.+. +|+ -+++||.++..+.+.
T Consensus 5 ~~~~rGnhiKAL~iied~i~~h~~~~~~---~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~----- 76 (111)
T PF04781_consen 5 DYFARGNHIKALEIIEDLISRHGEDESS---WLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPD----- 76 (111)
T ss_pred HHHHccCHHHHHHHHHHHHHHccCCCch---HHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChh-----
Confidence 3445677777777777666555433321 13333344444322 443 355555555554433
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 024043 110 MAARYYKEIAELYESEHNIEQTIVFFEKAADM 141 (273)
Q Consensus 110 ~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~ 141 (273)
.|..+..+|.-+...-.|++++.-.++++.+
T Consensus 77 -~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 77 -SAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred -HHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 3778888877766655566666666666544
No 302
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.84 E-value=6.8 Score=34.14 Aligned_cols=106 Identities=12% Similarity=0.147 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCC
Q 024043 31 DAADLFDKAANSFKLAKSWDKAGATYVKLANCH--LKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGR 107 (273)
Q Consensus 31 ~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~ 107 (273)
..+.+-.+.+.+|..-++|..|...+.-. ... .+..+.......+..++.+|.+. +..+|..+-.++.-+.....+
T Consensus 101 qv~~irl~LAsiYE~Eq~~~~aaq~L~~I-~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~N 179 (399)
T KOG1497|consen 101 QVASIRLHLASIYEKEQNWRDAAQVLVGI-PLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSN 179 (399)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcc-CcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccC
Confidence 44445556677777777777776654321 111 12223344555667778888777 678888887777666655555
Q ss_pred hhHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 024043 108 LSMAARYYKEIAELYESEHNIEQTIVFFEK 137 (273)
Q Consensus 108 ~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~ 137 (273)
.......-.--|.++...+++-+|.++|.+
T Consensus 180 e~Lqie~kvc~ARvlD~krkFlEAAqrYye 209 (399)
T KOG1497|consen 180 EQLQIEYKVCYARVLDYKRKFLEAAQRYYE 209 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555544444445555555666666666654
No 303
>PRK10941 hypothetical protein; Provisional
Probab=89.75 E-value=2.5 Score=36.08 Aligned_cols=80 Identities=9% Similarity=0.054 Sum_probs=67.1
Q ss_pred HHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 024043 101 MFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIAR 180 (273)
Q Consensus 101 ~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~ 180 (273)
.+....+..-..+.+.++-.+|...++++.|+.+.+..+.+...+- .-+...|.+|.++|.+..|+.-++..+.
T Consensus 170 ~L~~a~~~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp------~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 170 DLDEADNIEVIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDP------YEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 3444556667788999999999999999999999999999876442 3366789999999999999999999988
Q ss_pred HHhccc
Q 024043 181 QSLNNN 186 (273)
Q Consensus 181 ~~~~~~ 186 (273)
.+++++
T Consensus 244 ~~P~dp 249 (269)
T PRK10941 244 QCPEDP 249 (269)
T ss_pred hCCCch
Confidence 887775
No 304
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.66 E-value=0.49 Score=24.59 Aligned_cols=24 Identities=8% Similarity=0.084 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHH
Q 024043 113 RYYKEIAELYESEHNIEQTIVFFE 136 (273)
Q Consensus 113 ~~l~~lg~~~~~~g~~~~A~~~y~ 136 (273)
.+...+|.++...|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 466788999999999999988775
No 305
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=89.64 E-value=1.2 Score=44.71 Aligned_cols=92 Identities=13% Similarity=-0.015 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHhcCChh----HHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHH
Q 024043 91 AISCLEQAVNMFCDIGRLS----MAARYYKEIAELYESE----HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYA 162 (273)
Q Consensus 91 A~~~~~~Al~~~~~~g~~~----~~a~~l~~lg~~~~~~----g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~ 162 (273)
|-..|.+|+..|++.+... .--.+...+|..+... |+. +-|.+|+.-|+.......+.--|..-|.+|
T Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (932)
T PRK13184 487 AEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDP----RDFTQALSEFSYLHGGVGAPLEYLGKALVY 562 (932)
T ss_pred hhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCCh----HHHHHHHHHHHHhcCCCCCchHHHhHHHHH
Confidence 4445555555555543311 1123455556555443 333 678888888888776666666677788888
Q ss_pred HHhcCHHHHHHHHHHHHHHHhccc
Q 024043 163 AELEQYHKSIEIYEEIARQSLNNN 186 (273)
Q Consensus 163 ~~~g~y~~A~~~~~~~~~~~~~~~ 186 (273)
.++|+|++=+++|.-++.+..+.|
T Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~ 586 (932)
T PRK13184 563 QRLGEYNEEIKSLLLALKRYSQHP 586 (932)
T ss_pred HHhhhHHHHHHHHHHHHHhcCCCC
Confidence 999999999998888876655554
No 306
>PF03635 Vps35: Vacuolar protein sorting-associated protein 35 ; InterPro: IPR005378 The movement of lipid and protein components between intracellular organelles requires the regulated interactions of many molecules. Vacuolar protein sorting-associated protein (Vps)5 is a yeast protein that is a subunit of a large multimeric complex, termed the retromer complex, involved in retrograde transport of proteins from endosomes to the trans-Golgi network. Sorting nexin (SNX) 1 and SNX2 are its mammalian orthologs []. To carry out its biological functions, Vps5 forms the retromer complex with at least four other proteins: Vps17, Vps26, Vps29, and Vps35.Vps35 contains a central region of weaker sequence similarity, thought to indicate the presence of at least three domains [].; PDB: 2R17_C.
Probab=89.58 E-value=23 Score=35.06 Aligned_cols=120 Identities=15% Similarity=0.024 Sum_probs=82.6
Q ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHhcc-C-HHHHHH-HHHHHHHHHH
Q 024043 28 KYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHL-KLESKHEAAQAYVDAAHCYKKT-S-SNEAIS-CLEQAVNMFC 103 (273)
Q Consensus 28 ~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~aa~~~~~~~~~~~~~-~-~~eA~~-~~~~Al~~~~ 103 (273)
..+.|..+|-++|.+-...+--+-|-++|.+|..+|+ ...+...+-.+...+.....+. . .++-.+ .-.++.....
T Consensus 587 ~~~lalkL~Lq~A~~AD~~~~e~iaYEFf~QAf~iYEE~IsDSk~Q~~aL~~ii~tL~~~r~~~~Enyd~L~tk~t~yas 666 (762)
T PF03635_consen 587 SSELALKLYLQAAIVADQCGLEEIAYEFFSQAFTIYEEEISDSKAQFQALTLIIGTLQKTRSFSEENYDTLITKCTLYAS 666 (762)
T ss_dssp --HHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHH--SHHHHHHHHHHHHHHHCC-----HHHHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHH
Confidence 4688999999999888888866678899999999998 6778888888887777777655 1 222222 3334444445
Q ss_pred hcCChhHHHHHHHHHHHHHHhcC----------CHHHHHHHHHHHHHHHhccCC
Q 024043 104 DIGRLSMAARYYKEIAELYESEH----------NIEQTIVFFEKAADMFQNEEV 147 (273)
Q Consensus 104 ~~g~~~~~a~~l~~lg~~~~~~g----------~~~~A~~~y~~Al~~~~~~~~ 147 (273)
+.=+...++++....+.+++... +....++|++||+.+....-+
T Consensus 667 KLLKK~DQCRaV~~CSHLfW~~~~~~~~~~~~rd~krVlECLQKaLriAds~md 720 (762)
T PF03635_consen 667 KLLKKPDQCRAVYLCSHLFWSTEISEETGSFYRDGKRVLECLQKALRIADSCMD 720 (762)
T ss_dssp C-SSHHHHHHHHHHCHHHHHT-B-TTTTT-B---HHHHHHHHHHHHHHHHCSSS
T ss_pred HhcCcHHHHHHHHHHHHHHhCCCCCccccccccChHHHHHHHHHHHHHHHHHhC
Confidence 55566677888888888888753 678899999999999877654
No 307
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.47 E-value=26 Score=35.57 Aligned_cols=25 Identities=16% Similarity=0.190 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH
Q 024043 154 CKQKVAQYAAELEQYHKSIEIYEEI 178 (273)
Q Consensus 154 ~~~~~a~~~~~~g~y~~A~~~~~~~ 178 (273)
.+.+++..+..+|+|..|+..-+++
T Consensus 1222 N~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1222 NFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4566777777778887777655554
No 308
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=89.45 E-value=1.2 Score=29.97 Aligned_cols=35 Identities=31% Similarity=0.315 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 024043 111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE 145 (273)
Q Consensus 111 ~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~ 145 (273)
.|..+...|.-+...|++.+|+.+|++|++++.+.
T Consensus 5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~ 39 (75)
T cd02682 5 MARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQI 39 (75)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 34555666677777799999999999998887654
No 309
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=89.40 E-value=9.6 Score=34.55 Aligned_cols=114 Identities=13% Similarity=0.056 Sum_probs=75.3
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc---CC-----HH----HHHHHHHHHHHHHhcc-CHHHHHH
Q 024043 27 SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKL---ES-----KH----EAAQAYVDAAHCYKKT-SSNEAIS 93 (273)
Q Consensus 27 ~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~-----~~----~aa~~~~~~~~~~~~~-~~~eA~~ 93 (273)
|..|+=.+.--+=+..+..++.|..|+--|..|+++..+- +. .. -+...-..+..||.+. +|+-|+.
T Consensus 170 PqiDkwl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALn 249 (569)
T PF15015_consen 170 PQIDKWLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALN 249 (569)
T ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHH
Confidence 6666655444444445555677888877787777776532 11 11 2333456889999888 9999999
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC
Q 024043 94 CLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEE 146 (273)
Q Consensus 94 ~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~ 146 (273)
+-.+++.+....=. -...-|.++..+.+|.+|...+--|.=+|--.|
T Consensus 250 h~hrsI~lnP~~fr------nHLrqAavfR~LeRy~eAarSamia~ymywl~g 296 (569)
T PF15015_consen 250 HSHRSINLNPSYFR------NHLRQAAVFRRLERYSEAARSAMIADYMYWLSG 296 (569)
T ss_pred HHhhhhhcCcchhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999876543211 122335566666889999888888888887665
No 310
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=88.56 E-value=13 Score=30.83 Aligned_cols=99 Identities=12% Similarity=0.066 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCC
Q 024043 69 KHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEV 147 (273)
Q Consensus 69 ~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~ 147 (273)
+...|..+.+-|..|... -..-|.--|.+++.+.++. +.+.+-+|..+...|+++.|.+.|...+++-..
T Consensus 61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m------~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~--- 131 (297)
T COG4785 61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDM------PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT--- 131 (297)
T ss_pred hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCc------HHHHHHHHHHHHhcccchHHHHHhhhHhccCCc---
Confidence 344444455555555444 4445555555555555443 335666666666666666666666655555321
Q ss_pred cccHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 024043 148 TTSANQCKQKVAQYAAELEQYHKSIEIYEEIA 179 (273)
Q Consensus 148 ~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~ 179 (273)
-.-+..+.|..+.--|+|+-|.+-+.+.-
T Consensus 132 ---y~Ya~lNRgi~~YY~gR~~LAq~d~~~fY 160 (297)
T COG4785 132 ---YNYAHLNRGIALYYGGRYKLAQDDLLAFY 160 (297)
T ss_pred ---chHHHhccceeeeecCchHhhHHHHHHHH
Confidence 12334455555555566666665555443
No 311
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=88.52 E-value=1.3 Score=30.06 Aligned_cols=33 Identities=15% Similarity=0.288 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 024043 112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQN 144 (273)
Q Consensus 112 a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~ 144 (273)
|.-+..-|.-....|+|++|+.+|.+|++.+..
T Consensus 6 a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~ 38 (77)
T cd02683 6 AKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQ 38 (77)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 334444455566668899999999988888764
No 312
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=88.17 E-value=1.8 Score=29.10 Aligned_cols=33 Identities=15% Similarity=0.208 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 024043 112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQN 144 (273)
Q Consensus 112 a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~ 144 (273)
|..+..-|.-....|++++|+.+|.+|++.+..
T Consensus 8 A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~ 40 (77)
T smart00745 8 AKELISKALKADEAGDYEEALELYKKAIEYLLE 40 (77)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 334445556666678999999999999888765
No 313
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.71 E-value=27 Score=33.53 Aligned_cols=99 Identities=13% Similarity=0.086 Sum_probs=67.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHH
Q 024043 39 AANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKE 117 (273)
Q Consensus 39 a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~ 117 (273)
|...|+ ..+|..+++.|...+.-+..-.....-+.....+.-||... +.+.|++++++|-+.-++.- -+...
T Consensus 361 A~~~F~-~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~------l~q~~ 433 (872)
T KOG4814|consen 361 AKKLFK-MEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSP------LCQLL 433 (872)
T ss_pred hHHHHH-HHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccH------HHHHH
Confidence 344444 45789999999998887764443344488899999999888 99999999999876543221 12233
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 024043 118 IAELYESEHNIEQTIVFFEKAADMFQN 144 (273)
Q Consensus 118 lg~~~~~~g~~~~A~~~y~~Al~~~~~ 144 (273)
+-.+....|.-++|+.+..+....+.+
T Consensus 434 ~~~~~~~E~~Se~AL~~~~~~~s~~~~ 460 (872)
T KOG4814|consen 434 MLQSFLAEDKSEEALTCLQKIKSSEDE 460 (872)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhhhcc
Confidence 334444458888999888876665543
No 314
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=87.67 E-value=2 Score=34.84 Aligned_cols=60 Identities=22% Similarity=0.303 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHH
Q 024043 72 AAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIV 133 (273)
Q Consensus 72 aa~~~~~~~~~~~~~~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~ 133 (273)
.+.....+|..|.+.|+++++..+-++++++....++. ...+..|+.++..+|++++|--
T Consensus 140 t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n--~eil~sLas~~~~~~~~e~AYi 199 (203)
T PF11207_consen 140 TAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFN--PEILKSLASIYQKLKNYEQAYI 199 (203)
T ss_pred CHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCC--HHHHHHHHHHHHHhcchhhhhh
Confidence 35667788888988899999999999999998765555 5589999999999999998854
No 315
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=87.49 E-value=4.4 Score=27.33 Aligned_cols=28 Identities=21% Similarity=0.342 Sum_probs=22.0
Q ss_pred HHhcCCHHHHHHHHHHHHHHHhccCCcc
Q 024043 122 YESEHNIEQTIVFFEKAADMFQNEEVTT 149 (273)
Q Consensus 122 ~~~~g~~~~A~~~y~~Al~~~~~~~~~~ 149 (273)
-...|+|++|+++|..|++.|-...++.
T Consensus 16 eD~~gny~eA~~lY~~ale~~~~ekn~~ 43 (75)
T cd02680 16 EDEKGNAEEAIELYTEAVELCINTSNET 43 (75)
T ss_pred hhHhhhHHHHHHHHHHHHHHHHHhcChh
Confidence 3344999999999999999998754443
No 316
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=87.43 E-value=2.1 Score=28.79 Aligned_cols=31 Identities=16% Similarity=0.230 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 024043 114 YYKEIAELYESEHNIEQTIVFFEKAADMFQN 144 (273)
Q Consensus 114 ~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~ 144 (273)
.+..-|.-....|+|++|+.+|.+|++.+..
T Consensus 8 ~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~ 38 (75)
T cd02678 8 ELVKKAIEEDNAGNYEEALRLYQHALEYFMH 38 (75)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 3444455556668899999999988888754
No 317
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=87.40 E-value=17 Score=31.00 Aligned_cols=131 Identities=15% Similarity=0.112 Sum_probs=82.4
Q ss_pred HcCCHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHH-hcc-CHHHHHHHHHHHHHHHHh---cCC-----hhHH
Q 024043 45 LAKSWDKAGATYVKLANCHLKLES---KHEAAQAYVDAAHCY-KKT-SSNEAISCLEQAVNMFCD---IGR-----LSMA 111 (273)
Q Consensus 45 ~~~~~~~A~~~~~~a~~~~~~~~~---~~~aa~~~~~~~~~~-~~~-~~~eA~~~~~~Al~~~~~---~g~-----~~~~ 111 (273)
..|+++.|..++.|+-.... ..+ ....+..+.+.|... .+. ++++|+.++++|.++... .+. ....
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~-~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLN-SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHh-cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 45777777777777776653 222 345566777777765 455 899999999999999744 211 2456
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc-CCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 024043 112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE-EVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIAR 180 (273)
Q Consensus 112 a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~-~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~ 180 (273)
..++..++.+|...+.++-. .-..++++..+.. +++... .+.++- +..+.++.+.+.+.+.+.+.
T Consensus 84 ~~iL~~La~~~l~~~~~~~~-~ka~~~l~~l~~e~~~~~~~--~~L~l~-il~~~~~~~~~~~~L~~mi~ 149 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESV-EKALNALRLLESEYGNKPEV--FLLKLE-ILLKSFDEEEYEEILMRMIR 149 (278)
T ss_pred HHHHHHHHHHHHcCCChHHH-HHHHHHHHHHHHhCCCCcHH--HHHHHH-HHhccCChhHHHHHHHHHHH
Confidence 78999999999987776533 2244455555433 332221 112222 22336778888887777753
No 318
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=87.11 E-value=19 Score=31.13 Aligned_cols=131 Identities=10% Similarity=0.038 Sum_probs=84.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHh
Q 024043 46 AKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYES 124 (273)
Q Consensus 46 ~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~ 124 (273)
.+..++-++-+.+.++-.+..+-....+.+..++|..|... |.+.+.+.+++.+.-....|-.-..--+...+|.+|..
T Consensus 88 ~kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d 167 (412)
T COG5187 88 LKKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGD 167 (412)
T ss_pred HHhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhcc
Confidence 33455666666555555444444567788999999999887 99999999998888777777666666677778887754
Q ss_pred cCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 024043 125 EHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIA 179 (273)
Q Consensus 125 ~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~ 179 (273)
-.=.-+..+.+-.+++..|+-...+..-.-.|.......++.+|..++..++
T Consensus 168 ---~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l 219 (412)
T COG5187 168 ---RKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDIL 219 (412)
T ss_pred ---HHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 3333445556667777776522222222223333334457777777766665
No 319
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=87.03 E-value=2.1 Score=42.96 Aligned_cols=99 Identities=16% Similarity=0.135 Sum_probs=72.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-----CHHHHHHHHHHHHHHHHhcCChhHHHHHH
Q 024043 41 NSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-----SSNEAISCLEQAVNMFCDIGRLSMAARYY 115 (273)
Q Consensus 41 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-----~~~eA~~~~~~Al~~~~~~g~~~~~a~~l 115 (273)
+.|-..+.|+.|+..|.+...-+. .+.+--.+...+|....+. ++ +-|.+|+.-|....+..++.--|
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 555 (932)
T PRK13184 483 DAFLAEKLYDQALIFYRRIRESFP---GRKEGYEAQFRLGITLLEKASEQGDP----RDFTQALSEFSYLHGGVGAPLEY 555 (932)
T ss_pred HHHHhhHHHHHHHHHHHHHhhcCC---CcccchHHHHHhhHHHHHHHHhcCCh----HHHHHHHHHHHHhcCCCCCchHH
Confidence 455566667777777777665552 1122223555666665443 33 77888999998888888888889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhccC
Q 024043 116 KEIAELYESEHNIEQTIVFFEKAADMFQNEE 146 (273)
Q Consensus 116 ~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~ 146 (273)
..-|.+|..+|+|++=+++|.-|+.-|.+..
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (932)
T PRK13184 556 LGKALVYQRLGEYNEEIKSLLLALKRYSQHP 586 (932)
T ss_pred HhHHHHHHHhhhHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999999887643
No 320
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=87.02 E-value=2 Score=29.34 Aligned_cols=36 Identities=14% Similarity=0.002 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 024043 110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE 145 (273)
Q Consensus 110 ~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~ 145 (273)
..|....+.|..+.+.|+.++|+.+|++++.+..+.
T Consensus 6 ~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg 41 (79)
T cd02679 6 KQAFEEISKALRADEWGDKEQALAHYRKGLRELEEG 41 (79)
T ss_pred HHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHH
Confidence 344556666777788899999999999999887754
No 321
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=86.56 E-value=2 Score=28.96 Aligned_cols=30 Identities=20% Similarity=0.310 Sum_probs=21.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 024043 115 YKEIAELYESEHNIEQTIVFFEKAADMFQN 144 (273)
Q Consensus 115 l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~ 144 (273)
+...|.-....|+|++|..+|..+++.+..
T Consensus 9 l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~ 38 (75)
T cd02677 9 LIRLALEKEEEGDYEAAFEFYRAGVDLLLK 38 (75)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 333344444458899999999998888864
No 322
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=86.56 E-value=22 Score=31.25 Aligned_cols=130 Identities=12% Similarity=0.137 Sum_probs=89.6
Q ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcC
Q 024043 48 SWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEH 126 (273)
Q Consensus 48 ~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g 126 (273)
..++-++-+.+..+-.+++--..+...+..+.+..|.+. |-+.|.+.+++..+--...|..-..--+...+|..|.
T Consensus 79 ~neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~--- 155 (393)
T KOG0687|consen 79 ANEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYL--- 155 (393)
T ss_pred hhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhc---
Confidence 344555556666655554433566778888889888777 9999999999988877778877777777888888874
Q ss_pred CHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 024043 127 NIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIAR 180 (273)
Q Consensus 127 ~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~ 180 (273)
+.+---+..++|-.++++.|+=...+..-.--|.......++.+|..+|..++.
T Consensus 156 D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 156 DHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred cHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcc
Confidence 466666777888888888876322222222333333445678888887777653
No 323
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=86.18 E-value=27 Score=32.22 Aligned_cols=18 Identities=11% Similarity=-0.160 Sum_probs=9.7
Q ss_pred HHHHHHHHHcCCHHHHHH
Q 024043 37 DKAANSFKLAKSWDKAGA 54 (273)
Q Consensus 37 ~~a~~~~~~~~~~~~A~~ 54 (273)
......+...|-++.|+.
T Consensus 299 ~~i~~fL~~~G~~e~AL~ 316 (443)
T PF04053_consen 299 QSIARFLEKKGYPELALQ 316 (443)
T ss_dssp HHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHCCCHHHHHh
Confidence 344555666666666555
No 324
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=85.73 E-value=20 Score=37.48 Aligned_cols=54 Identities=11% Similarity=-0.001 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHH
Q 024043 70 HEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYE 123 (273)
Q Consensus 70 ~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~ 123 (273)
...++..-.+|+.|... ++.+|+.+|..|+++.+..+|.--.|.++..++.+..
T Consensus 239 r~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~ 293 (1185)
T PF08626_consen 239 RCKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLL 293 (1185)
T ss_pred hhhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHH
Confidence 35666777788888766 9999999999999999999999999999988876553
No 325
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=85.29 E-value=3 Score=27.91 Aligned_cols=31 Identities=16% Similarity=0.223 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 024043 114 YYKEIAELYESEHNIEQTIVFFEKAADMFQN 144 (273)
Q Consensus 114 ~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~ 144 (273)
.+..-|.-....|++++|+.+|..|++.+..
T Consensus 8 ~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~ 38 (75)
T cd02656 8 ELIKQAVKEDEDGNYEEALELYKEALDYLLQ 38 (75)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 3444555566668888888888888888764
No 326
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=85.28 E-value=1.4 Score=38.09 Aligned_cols=70 Identities=19% Similarity=0.162 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 024043 69 KHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQN 144 (273)
Q Consensus 69 ~~~aa~~~~~~~~~~~~~~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~ 144 (273)
..++..++..++..++.+..++|...|+.|+.+....-+ ++..+|...+...+.-+|-+||-+|+.+...
T Consensus 113 ~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~------~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ 182 (472)
T KOG3824|consen 113 VKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQ------ILIEMGQFREMHNEIVEADQCYVKALTISPG 182 (472)
T ss_pred hHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHH------HHHHHhHHHHhhhhhHhhhhhhheeeeeCCC
Confidence 456667778888888888889999999999988766544 8899999999888899999999999988654
No 327
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=85.17 E-value=10 Score=28.29 Aligned_cols=56 Identities=13% Similarity=0.236 Sum_probs=27.9
Q ss_pred CHHHHHHHHHHHHHHHHhcCChhH---------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 024043 87 SSNEAISCLEQAVNMFCDIGRLSM---------AARYYKEIAELYESEHNIEQTIVFFEKAADMF 142 (273)
Q Consensus 87 ~~~eA~~~~~~Al~~~~~~g~~~~---------~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~ 142 (273)
++-.++-+|++|+.+..+.+.... -.....|+|..++..|+.+=.+.|++-|.+..
T Consensus 16 ~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~V 80 (140)
T PF10952_consen 16 DPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKV 80 (140)
T ss_pred cHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 555666666666655554421111 01123455555555555555555555554443
No 328
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=85.06 E-value=1.9 Score=36.56 Aligned_cols=43 Identities=14% Similarity=0.258 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043 91 AISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAA 139 (273)
Q Consensus 91 A~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al 139 (273)
|..+|.+|+.+.+..|+ .++.+|.+....|+.=.|+=+|-+++
T Consensus 1 A~~~Y~~A~~l~P~~G~------p~nQLAvl~~~~~~~l~avy~y~Rsl 43 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGN------PYNQLAVLASYQGDDLDAVYYYIRSL 43 (278)
T ss_dssp HHHHHHHHHHH-TTBSH------HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCC------cccchhhhhccccchHHHHHHHHHHH
Confidence 45566666666666654 55566666666566666665555555
No 329
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=84.89 E-value=18 Score=32.45 Aligned_cols=142 Identities=13% Similarity=0.093 Sum_probs=78.7
Q ss_pred CCHHHHHHHHHHHH------------------HHHHH---cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 024043 27 SKYEDAADLFDKAA------------------NSFKL---AKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKK 85 (273)
Q Consensus 27 ~~~~~A~~~~~~a~------------------~~~~~---~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~ 85 (273)
.||+.=+.+.+..- -++.. .|+.++|.+.+..++.-. .......+--+|.+|+.
T Consensus 155 qdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~-----~~~~~d~~gL~GRIyKD 229 (374)
T PF13281_consen 155 QDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESD-----ENPDPDTLGLLGRIYKD 229 (374)
T ss_pred hhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhcc-----CCCChHHHHHHHHHHHH
Confidence 57777777766542 23333 788888888887764332 11234577778888876
Q ss_pred c----------CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HHHhccCCcccH
Q 024043 86 T----------SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAA----DMFQNEEVTTSA 151 (273)
Q Consensus 86 ~----------~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al----~~~~~~~~~~~~ 151 (273)
. ..++|+.+|+++.++-... -.-.|++.++...|...+...-.++-. .+.-..+.....
T Consensus 230 ~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-------Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 230 LFLESNFTDRESLDKAIEWYRKGFEIEPDY-------YSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHcCccchHHHHHHHHHHHHHHcCCccc-------cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 5 2467777777776654211 122344555555554333332222222 222222322222
Q ss_pred HHHH--HHHHHHHHHhcCHHHHHHHHHHHHH
Q 024043 152 NQCK--QKVAQYAAELEQYHKSIEIYEEIAR 180 (273)
Q Consensus 152 ~~~~--~~~a~~~~~~g~y~~A~~~~~~~~~ 180 (273)
...| -.++.+.+-.|++++|+..++++..
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFK 333 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 2222 3344566778999999999999863
No 330
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=84.31 E-value=9.5 Score=33.20 Aligned_cols=62 Identities=15% Similarity=0.188 Sum_probs=49.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043 117 EIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN 185 (273)
Q Consensus 117 ~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~ 185 (273)
..+..+ ..|+.++|...|+.|+.+.... .+++..+|.+.....+.-+|-.+|-+++...+++
T Consensus 122 ~A~~~~-~~Gk~ekA~~lfeHAlalaP~~------p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~n 183 (472)
T KOG3824|consen 122 AAGRSR-KDGKLEKAMTLFEHALALAPTN------PQILIEMGQFREMHNEIVEADQCYVKALTISPGN 183 (472)
T ss_pred HHHHHH-hccchHHHHHHHHHHHhcCCCC------HHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCc
Confidence 333433 3499999999999999997533 4789999999888889999999999998766665
No 331
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=84.15 E-value=7.6 Score=38.28 Aligned_cols=57 Identities=12% Similarity=0.139 Sum_probs=27.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 024043 119 AELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQ 181 (273)
Q Consensus 119 g~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~ 181 (273)
|.++.++|++++|..+.+ |++.-... --.++.-+-.||..+|++++|..+|+++...
T Consensus 50 aLsl~r~gk~~ea~~~Le-~~~~~~~~-----D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~ 106 (932)
T KOG2053|consen 50 ALSLFRLGKGDEALKLLE-ALYGLKGT-----DDLTLQFLQNVYRDLGKLDEAVHLYERANQK 106 (932)
T ss_pred HHHHHHhcCchhHHHHHh-hhccCCCC-----chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Confidence 334445566666664332 22221111 1234445555666666666666666666543
No 332
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=84.00 E-value=28 Score=30.30 Aligned_cols=110 Identities=19% Similarity=0.233 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-HHhcc---
Q 024043 71 EAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAAD-MFQNE--- 145 (273)
Q Consensus 71 ~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~-~~~~~--- 145 (273)
..+.++...+.+.++. .++.|..++.++.......+.. ...+...-+.++...|+..+|+...+..+. .....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~--~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL--LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC--CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence 4444445555555444 5555555555544333211111 223444445666677899999999988887 33322
Q ss_pred ------------------------CCcccHHHHHHHHHHHHHHh------cCHHHHHHHHHHHHHHH
Q 024043 146 ------------------------EVTTSANQCKQKVAQYAAEL------EQYHKSIEIYEEIARQS 182 (273)
Q Consensus 146 ------------------------~~~~~~~~~~~~~a~~~~~~------g~y~~A~~~~~~~~~~~ 182 (273)
......+.++..+|.....+ +.+++++..|.++....
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~ 288 (352)
T PF02259_consen 222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLD 288 (352)
T ss_pred ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhC
Confidence 11234457777777777777 78888888998886443
No 333
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.90 E-value=29 Score=30.40 Aligned_cols=74 Identities=12% Similarity=0.158 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043 112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN 185 (273)
Q Consensus 112 a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~ 185 (273)
...+.++|.+|.+.++..+|..+-.+|.=+.....++......-.-.|.++-..+++-+|...|-+...+...+
T Consensus 144 l~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels~~ki~~ 217 (399)
T KOG1497|consen 144 LLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELSQRKIVD 217 (399)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33456888999998999999999888876655554443333334445566667788888888877776554444
No 334
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.43 E-value=21 Score=28.50 Aligned_cols=98 Identities=12% Similarity=0.153 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcc-cHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhc
Q 024043 113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTT-SANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYG 191 (273)
Q Consensus 113 ~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~-~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~ 191 (273)
-+...+|.+..+.|+-..|+.+|.++..-- ..|. ....+..+.+.++...|.|+.-....+-.. ...+..+++
T Consensus 95 LA~mr~at~~a~kgdta~AV~aFdeia~dt---~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa---~d~n~mR~s 168 (221)
T COG4649 95 LARMRAATLLAQKGDTAAAVAAFDEIAADT---SIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLA---GDGNPMRHS 168 (221)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHhccC---CCcchhhHHHHHHHHHHHhccccHHHHHHHhhhcc---CCCChhHHH
Confidence 356778888888899999999998765432 2221 223456777888889999988776655442 112234555
Q ss_pred hhhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 024043 192 VKGHLLNAGICQLCKGDVVAITNALERY 219 (273)
Q Consensus 192 ~~~~~~~~gl~~l~~gd~~~A~~~~~~~ 219 (273)
.++. +|+.-+..||+..|+.-|...
T Consensus 169 ArEA---LglAa~kagd~a~A~~~F~qi 193 (221)
T COG4649 169 AREA---LGLAAYKAGDFAKAKSWFVQI 193 (221)
T ss_pred HHHH---HhHHHHhccchHHHHHHHHHH
Confidence 6654 478888999999999888774
No 335
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=83.02 E-value=35 Score=30.71 Aligned_cols=58 Identities=22% Similarity=0.257 Sum_probs=39.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc---CHHHHHHHHHHHHHH
Q 024043 40 ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT---SSNEAISCLEQAVNM 101 (273)
Q Consensus 40 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~---~~~eA~~~~~~Al~~ 101 (273)
+.-+...++|..|...+.....- +..... ...+..+..+|... ++.+|.++++..+..
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r---l~~~~~-~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR---LPGREE-YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh---CCchhh-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34444678888888888876643 332222 56677777777665 889999998876654
No 336
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=82.61 E-value=13 Score=25.36 Aligned_cols=64 Identities=11% Similarity=0.071 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 024043 113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIA 179 (273)
Q Consensus 113 ~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~ 179 (273)
+-...-|.-+....+..+|+....+|++..... .....++.-+..+|...|+|.+.+++--+-+
T Consensus 7 k~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~---~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~ 70 (80)
T PF10579_consen 7 KQQIEKGLKLYHQNETQQALQKWRKALEKITDR---EDRFRVLGYLIQAHMEWGKYREMLAFALQQL 70 (80)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhhcCCh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455688999999999999887653 3445677778889999999999998765543
No 337
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=82.56 E-value=4.3 Score=27.33 Aligned_cols=28 Identities=11% Similarity=0.106 Sum_probs=20.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 024043 117 EIAELYESEHNIEQTIVFFEKAADMFQN 144 (273)
Q Consensus 117 ~lg~~~~~~g~~~~A~~~y~~Al~~~~~ 144 (273)
.-|.-....|+|++|+.+|..|++.+..
T Consensus 11 ~~Av~~D~~g~y~eA~~lY~~ale~~~~ 38 (75)
T cd02684 11 VQAVKKDQRGDAAAALSLYCSALQYFVP 38 (75)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 3344455558899999999988888764
No 338
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=82.34 E-value=35 Score=30.18 Aligned_cols=27 Identities=19% Similarity=0.386 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 024043 153 QCKQKVAQYAAELEQYHKSIEIYEEIA 179 (273)
Q Consensus 153 ~~~~~~a~~~~~~g~y~~A~~~~~~~~ 179 (273)
.+-.+++.|-.++|+..+|++.++...
T Consensus 276 YIKRRLAMCARklGrlrEA~K~~RDL~ 302 (556)
T KOG3807|consen 276 YIKRRLAMCARKLGRLREAVKIMRDLM 302 (556)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 445778888889999999999988774
No 339
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=81.84 E-value=4.7 Score=34.06 Aligned_cols=43 Identities=12% Similarity=0.121 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 024043 131 TIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIA 179 (273)
Q Consensus 131 A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~ 179 (273)
|..+|.+|+.+.+..| ..++++|.++...|+.-.|+-+|-|++
T Consensus 1 A~~~Y~~A~~l~P~~G------~p~nQLAvl~~~~~~~l~avy~y~Rsl 43 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNG------NPYNQLAVLASYQGDDLDAVYYYIRSL 43 (278)
T ss_dssp HHHHHHHHHHH-TTBS------HHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCC------CcccchhhhhccccchHHHHHHHHHHH
Confidence 6889999999999887 458899999999999999999998886
No 340
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=81.64 E-value=5.8 Score=26.73 Aligned_cols=37 Identities=16% Similarity=0.056 Sum_probs=24.1
Q ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 024043 28 KYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLK 65 (273)
Q Consensus 28 ~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~ 65 (273)
+.+.|+.+..+| .---..|+|++|++.|..|++.+..
T Consensus 2 ~l~kai~Lv~~A-~~eD~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 2 DLERAHFLVTQA-FDEDEKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred CHHHHHHHHHHH-HHhhHhhhHHHHHHHHHHHHHHHHH
Confidence 345666666654 4445567777777777777777754
No 341
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=81.54 E-value=8.6 Score=32.02 Aligned_cols=58 Identities=10% Similarity=0.243 Sum_probs=48.0
Q ss_pred HHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043 122 YESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN 185 (273)
Q Consensus 122 ~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~ 185 (273)
..+.++.+.+.+.|.+|+++..+ + ...|.++|....+.|+.+.|...|++.+...+.+
T Consensus 5 ~~~~~D~~aaaely~qal~lap~-----w-~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPE-----W-AAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCch-----h-hhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 34459999999999999999753 3 3568899999999999999999999998665554
No 342
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=81.48 E-value=42 Score=30.59 Aligned_cols=146 Identities=12% Similarity=0.007 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHH
Q 024043 34 DLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAA 112 (273)
Q Consensus 34 ~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a 112 (273)
...--.+.+++..+..-.+.-....+.....+...+...+..-..++....-. .|++|+.....|+....-.|-...-|
T Consensus 314 sVLL~~ae~~~~g~~a~l~lplaL~~~~~~sey~ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~dra 393 (482)
T KOG4322|consen 314 SVLLTIAEARESGDTACLNLPLALMFEFKRSEYSLDYLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDRA 393 (482)
T ss_pred HHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHhccchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhcc
Confidence 33334455666566666666666666666556665555555555555555444 88999999999998887777655554
Q ss_pred HHHHHHHHHHH------hcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCH---HHHHHHHHHHH
Q 024043 113 RYYKEIAELYE------SEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQY---HKSIEIYEEIA 179 (273)
Q Consensus 113 ~~l~~lg~~~~------~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y---~~A~~~~~~~~ 179 (273)
++..-.+.|+. ...+.+.+.++.++|..++...+-...+.++..-.+..|-..|+- +++...|++..
T Consensus 394 ra~fvfanC~lA~a~s~~~e~ld~~~~~L~~A~~~f~kL~~he~ildv~yf~A~~yn~lGd~~eRn~~AslFrk~~ 469 (482)
T KOG4322|consen 394 RAIFVFANCTLAFALSCANESLDGFPRYLDLAQSIFYKLGCHEKILDVTYFSAYQYNHLGDSPERNLLASLFRKAW 469 (482)
T ss_pred eeEEEEEeeeecchhhhhhhhHHhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHH
Confidence 44332222221 226788899999999999998887666777777778888888764 56677777774
No 343
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=81.48 E-value=4.5 Score=25.21 Aligned_cols=32 Identities=6% Similarity=-0.063 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 024043 114 YYKEIAELYESEHNIEQTIVFFEKAADMFQNE 145 (273)
Q Consensus 114 ~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~ 145 (273)
++..+|..+..+|+|++|..+.+.++++-+..
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N 34 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDN 34 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc
Confidence 67788999999999999999999999885543
No 344
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=81.16 E-value=16 Score=33.18 Aligned_cols=100 Identities=13% Similarity=0.137 Sum_probs=71.7
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHhc-----------CChhHH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 024043 74 QAYVDAAHCYKKTSSNEAISCLEQAVNMFCDI-----------GRLSMA-ARYYKEIAELYESEHNIEQTIVFFEKAADM 141 (273)
Q Consensus 74 ~~~~~~~~~~~~~~~~eA~~~~~~Al~~~~~~-----------g~~~~~-a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~ 141 (273)
.++..+..+|+...|..|.--|+-|+++..+. ||.... .-+..++..||..+++++-|+.+-.+.+-+
T Consensus 178 vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~l 257 (569)
T PF15015_consen 178 VALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINL 257 (569)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhc
Confidence 35667777777777777777777777776432 332322 345678999999999999999999988877
Q ss_pred HhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 024043 142 FQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIA 179 (273)
Q Consensus 142 ~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~ 179 (273)
.... ...+..-|.|+..+.+|.+|...+.-+.
T Consensus 258 nP~~------frnHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 258 NPSY------FRNHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred Ccch------hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5422 2345566778888999999988766553
No 345
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=80.74 E-value=57 Score=31.58 Aligned_cols=17 Identities=12% Similarity=0.354 Sum_probs=9.9
Q ss_pred HHHHhcCHHHHHHHHHH
Q 024043 161 YAAELEQYHKSIEIYEE 177 (273)
Q Consensus 161 ~~~~~g~y~~A~~~~~~ 177 (273)
++++.+++++|..+-++
T Consensus 782 lHve~~~W~eAFalAe~ 798 (1081)
T KOG1538|consen 782 LHVETQRWDEAFALAEK 798 (1081)
T ss_pred heeecccchHhHhhhhh
Confidence 34555666666665544
No 346
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=80.41 E-value=7.8 Score=25.35 Aligned_cols=33 Identities=21% Similarity=0.232 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 024043 31 DAADLFDKAANSFKLAKSWDKAGATYVKLANCHL 64 (273)
Q Consensus 31 ~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~ 64 (273)
.|..+..+ |.-+-..|++++|+++|.++++.+.
T Consensus 4 ~A~~~~~~-Av~~D~~g~~~~A~~~Y~~ai~~l~ 36 (69)
T PF04212_consen 4 KAIELIKK-AVEADEAGNYEEALELYKEAIEYLM 36 (69)
T ss_dssp HHHHHHHH-HHHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 44444444 4445557777777777777776654
No 347
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=80.08 E-value=3.6 Score=24.59 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=22.2
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHH
Q 024043 156 QKVAQYAAELEQYHKSIEIYEEIA 179 (273)
Q Consensus 156 ~~~a~~~~~~g~y~~A~~~~~~~~ 179 (273)
..+|..|+.+|+++.|.+.+++++
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHH
Confidence 578999999999999999999997
No 348
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=79.47 E-value=43 Score=29.46 Aligned_cols=130 Identities=15% Similarity=0.120 Sum_probs=90.1
Q ss_pred HhhHHHHHHHHHHhhccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 024043 5 IARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYK 84 (273)
Q Consensus 5 ~~~a~~l~~~Aek~~k~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~ 84 (273)
+++=.+.+++||+-+- .. +..+....-+..|.+.|+-+.|.+.+.+..+-.-.+|..-+..-+...+|..|-
T Consensus 84 i~eld~~iedaeenlG-------E~-ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~ 155 (393)
T KOG0687|consen 84 IKELDEKIEDAEENLG-------ES-EVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYL 155 (393)
T ss_pred HHHHHHHHHHHHHhcc-------hH-HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhc
Confidence 4455555566665321 21 233444456788899999999999999988877788887777778888888876
Q ss_pred ccCHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 024043 85 KTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQN 144 (273)
Q Consensus 85 ~~~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~ 144 (273)
. .+---+..++|-.++.+-||+.+--+.-.--|.......++.+|...+-.++.-|..
T Consensus 156 D--~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS 213 (393)
T KOG0687|consen 156 D--HDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFTS 213 (393)
T ss_pred c--HHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccccc
Confidence 4 455556677888899999998887666555555555556667776666666665554
No 349
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=79.37 E-value=41 Score=29.19 Aligned_cols=75 Identities=11% Similarity=0.051 Sum_probs=60.6
Q ss_pred CChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 024043 106 GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQS 182 (273)
Q Consensus 106 g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~ 182 (273)
..+...+.++...+.+....|.++.|.....++.......... ...+....+.++...|+..+|+..++..+...
T Consensus 140 ~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~--~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~ 214 (352)
T PF02259_consen 140 LLPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL--LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCR 214 (352)
T ss_pred cchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC--CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 3477788899999999999999999999999888766444321 34567778899999999999999998887633
No 350
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=79.04 E-value=8.1 Score=26.13 Aligned_cols=34 Identities=12% Similarity=0.157 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 024043 30 EDAADLFDKAANSFKLAKSWDKAGATYVKLANCHL 64 (273)
Q Consensus 30 ~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~ 64 (273)
..|.++..+ |.-.-..|++++|+.+|.++++.+.
T Consensus 4 ~~a~~l~~~-Ave~D~~g~y~eAl~~Y~~aie~l~ 37 (77)
T cd02683 4 LAAKEVLKR-AVELDQEGRFQEALVCYQEGIDLLM 37 (77)
T ss_pred HHHHHHHHH-HHHHHHhccHHHHHHHHHHHHHHHH
Confidence 345555544 3555667777777777777777664
No 351
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=78.86 E-value=57 Score=31.97 Aligned_cols=160 Identities=11% Similarity=0.111 Sum_probs=84.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHhccCHHHHHHH-HHHHHHHHHhcC-----ChhHH
Q 024043 39 AANSFKLAKSWDKAGATYVKLANCHLKLE-SKHEAAQAYVDAAHCYKKTSSNEAISC-LEQAVNMFCDIG-----RLSMA 111 (273)
Q Consensus 39 a~~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~aa~~~~~~~~~~~~~~~~eA~~~-~~~Al~~~~~~g-----~~~~~ 111 (273)
+..+|..+|+|++|+++-..|...+.-.. +.... ..+ .+.++. .+++.+.|...+ |....
T Consensus 65 ~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~e-------tiv------ak~id~yi~~~~~~~~~~~~~~~iD~rL~ 131 (929)
T KOG2062|consen 65 ASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVE-------TIV------AKCIDMYIETASETYKNPEQKSPIDQRLR 131 (929)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccccccCccchhh-------HHH------HHHHHHHHHHHHHHhcCccccCCCCHHHH
Confidence 56889999999999999988876654222 11111 111 122332 356666666556 77777
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHH--HHHHHHhcc----CCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043 112 ARYYKEIAELYESEHNIEQTIVFFE--KAADMFQNE----EVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN 185 (273)
Q Consensus 112 a~~l~~lg~~~~~~g~~~~A~~~y~--~Al~~~~~~----~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~ 185 (273)
.-+...++.++.. +++.+|+-..- +.+++++.. .+.......+..+.........+ =.+.++..+...+..
T Consensus 132 ~iv~rmi~kcl~d-~e~~~aiGia~E~~rld~ie~Ail~~d~~~~~~~yll~l~~s~v~~~ef--R~~vlr~lv~~y~~~ 208 (929)
T KOG2062|consen 132 DIVERMIQKCLDD-NEYKQAIGIAFETRRLDIIEEAILKSDSVIGNLTYLLELLISLVNNREF--RNKVLRLLVKTYLKL 208 (929)
T ss_pred HHHHHHHHHhhhh-hHHHHHHhHHhhhhhHHHHHHHhccccccchHHHHHHHHHHHHHhhHHH--HHHHHHHHHHHHccC
Confidence 8888888888877 66766664432 234444431 11111111222222222221111 111222222222222
Q ss_pred chhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043 186 NLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ 220 (273)
Q Consensus 186 ~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~ 220 (273)
+ .-.+++++.|+....|...+...+++..
T Consensus 209 ~------~PDy~~vc~c~v~Ldd~~~va~ll~kL~ 237 (929)
T KOG2062|consen 209 P------SPDYFSVCQCYVFLDDAEAVADLLEKLV 237 (929)
T ss_pred C------CCCeeeeeeeeEEcCCHHHHHHHHHHHH
Confidence 1 1134667778888889888888777653
No 352
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=78.50 E-value=50 Score=29.67 Aligned_cols=63 Identities=8% Similarity=0.057 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHh---cCCHHHHHHHHHHH
Q 024043 74 QAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYES---EHNIEQTIVFFEKA 138 (273)
Q Consensus 74 ~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~---~g~~~~A~~~y~~A 138 (273)
....++-.+|+.. +|+.-++..+..-.+- .. +......+....|.++.. .|+.++|+..+..+
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p-~~-~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~ 208 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALP-TC-DVANQHNIKFQYAFALNRRNKPGDREKALQILLPV 208 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccC-cc-chhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHH
Confidence 3344455555555 5554444444332220 00 011112233344444444 35555555555554
No 353
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=78.47 E-value=9.2 Score=25.69 Aligned_cols=35 Identities=17% Similarity=0.038 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 024043 29 YEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHL 64 (273)
Q Consensus 29 ~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~ 64 (273)
.++|+.+..+| .-....|++++|..+|..+++.+.
T Consensus 3 l~~Ai~lv~~A-v~~D~~g~y~eA~~lY~~ale~~~ 37 (75)
T cd02684 3 LEKAIALVVQA-VKKDQRGDAAAALSLYCSALQYFV 37 (75)
T ss_pred HHHHHHHHHHH-HHHHHhccHHHHHHHHHHHHHHHH
Confidence 45566666654 555667777777777777777764
No 354
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=78.22 E-value=3.1 Score=37.98 Aligned_cols=87 Identities=13% Similarity=0.093 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhc
Q 024043 87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE 166 (273)
Q Consensus 87 ~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g 166 (273)
+++.|+..|.+|+++-..+ |..+.+-+..+...+++..|+.-..+|+++-. ....++..-|.....++
T Consensus 19 ~fd~avdlysKaI~ldpnc------a~~~anRa~a~lK~e~~~~Al~Da~kaie~dP------~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 19 VFDVAVDLYSKAIELDPNC------AIYFANRALAHLKVESFGGALHDALKAIELDP------TYIKAYVRRGTAVMALG 86 (476)
T ss_pred hHHHHHHHHHHHHhcCCcc------eeeechhhhhheeechhhhHHHHHHhhhhcCc------hhhheeeeccHHHHhHH
Confidence 7777777777777764422 33455556666777888888888887777642 33466777777777788
Q ss_pred CHHHHHHHHHHHHHHHhcc
Q 024043 167 QYHKSIEIYEEIARQSLNN 185 (273)
Q Consensus 167 ~y~~A~~~~~~~~~~~~~~ 185 (273)
++.+|...|+......+++
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd 105 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPND 105 (476)
T ss_pred HHHHHHHHHHHhhhcCcCc
Confidence 8888888887775444444
No 355
>KOG1938 consensus Protein with predicted involvement in meiosis (GSG1) [Cell cycle control, cell division, chromosome partitioning]
Probab=78.07 E-value=16 Score=36.41 Aligned_cols=116 Identities=16% Similarity=0.071 Sum_probs=77.1
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHHhcc-CHHHHHHH
Q 024043 22 WGLFGSKYEDAADLFDKAANSFKLA----KSWDKAGATYVKLANCHL--KLESKHEAAQAYVDAAHCYKKT-SSNEAISC 94 (273)
Q Consensus 22 ~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~A~~~~~~a~~~~~--~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~ 94 (273)
.++++++.+.....|.+++..+-.. +++..|+- .++++.++. +...++..+-+..-+|..+... .+..|++|
T Consensus 260 c~l~~aei~k~~~lh~eaa~~~~r~~see~dl~~all-leqaal~f~~tkp~m~~ktffHpVLal~r~s~anqp~ha~R~ 338 (960)
T KOG1938|consen 260 CVLNSAEILKFLGLHKEAAEALARETSEEGDLLSALL-LEQAALCFGSTKPPMPRKTFFHPVLALIRFSSANQPKHALRC 338 (960)
T ss_pred hccCchHHHHHHHHHHHHHHHHHHhhCcCchhhhHHH-HHHHHHHhhcCCCCccchhhcceeehhhhcccCCChhHHHHH
Confidence 4566677778887777776555443 33444443 344444555 4455666677777777777666 78889999
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043 95 LEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAA 139 (273)
Q Consensus 95 ~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al 139 (273)
|.+|+..|...+-....-..+..++..|.- -..+.|.+.+.+.+
T Consensus 339 y~~ai~v~~~~~ws~~edh~~f~i~~~y~l-~~~D~a~~~f~~~i 382 (960)
T KOG1938|consen 339 YRQAIPVLKKPTWSFAEDHLYFTILHVYLL-CQEDDADEEFSKLI 382 (960)
T ss_pred HHHHhhhcCCCCcchhHHhHHHhHHHhhhh-hcchhHHHHHHHHH
Confidence 999999998888777777788888885543 33455555555544
No 356
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=77.61 E-value=91 Score=32.25 Aligned_cols=24 Identities=17% Similarity=0.281 Sum_probs=15.4
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHH
Q 024043 156 QKVAQYAAELEQYHKSIEIYEEIA 179 (273)
Q Consensus 156 ~~~a~~~~~~g~y~~A~~~~~~~~ 179 (273)
...|..|...|+.++|++.|+..+
T Consensus 956 ~~Aal~Ye~~GklekAl~a~~~~~ 979 (1265)
T KOG1920|consen 956 DEAALMYERCGKLEKALKAYKECG 979 (1265)
T ss_pred cHHHHHHHHhccHHHHHHHHHHhc
Confidence 344556666677777777776653
No 357
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=77.61 E-value=8.4 Score=26.25 Aligned_cols=34 Identities=9% Similarity=0.081 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHh
Q 024043 71 EAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCD 104 (273)
Q Consensus 71 ~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~ 104 (273)
..|..+.+-|..+.+. ++++|+.+|++++.+..+
T Consensus 6 ~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~e 40 (79)
T cd02679 6 KQAFEEISKALRADEWGDKEQALAHYRKGLRELEE 40 (79)
T ss_pred HHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHH
Confidence 3344444445455444 677777777777766643
No 358
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=77.25 E-value=10 Score=30.48 Aligned_cols=80 Identities=11% Similarity=0.086 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc------CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhc--
Q 024043 54 ATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT------SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE-- 125 (273)
Q Consensus 54 ~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~------~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~-- 125 (273)
.-|+.|..++...-+..+-+.+....|.-+... ++..|+++|..+.+. .+ ..+-..+|.++..-
T Consensus 49 knF~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~----n~----~~aC~~~gLl~~~g~~ 120 (248)
T KOG4014|consen 49 KNFQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA----NI----PQACRYLGLLHWNGEK 120 (248)
T ss_pred HHHHHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc----CC----HHHHhhhhhhhccCcC
Confidence 367777778877766666667777777766543 789999999988762 22 23556677777652
Q ss_pred ---C--CHHHHHHHHHHHHHH
Q 024043 126 ---H--NIEQTIVFFEKAADM 141 (273)
Q Consensus 126 ---g--~~~~A~~~y~~Al~~ 141 (273)
+ +..+|.+++.+|.++
T Consensus 121 ~r~~dpd~~Ka~~y~traCdl 141 (248)
T KOG4014|consen 121 DRKADPDSEKAERYMTRACDL 141 (248)
T ss_pred CccCCCCcHHHHHHHHHhccC
Confidence 2 367899999998876
No 359
>PRK10941 hypothetical protein; Provisional
Probab=76.69 E-value=34 Score=29.26 Aligned_cols=85 Identities=6% Similarity=0.039 Sum_probs=62.9
Q ss_pred cccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH-
Q 024043 148 TTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDIAASM- 226 (273)
Q Consensus 148 ~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~ll~a~- 226 (273)
..-....+.++=.++.+.++++.|+.+.++.+...++++. -+.--|+++...|-+..|..-++.| ++.+
T Consensus 177 ~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~-------e~RDRGll~~qL~c~~~A~~DL~~f---l~~~P 246 (269)
T PRK10941 177 IEVIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPY-------EIRDRGLIYAQLDCEHVALSDLSYF---VEQCP 246 (269)
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHcCCcHHHHHHHHHH---HHhCC
Confidence 3344566777888899999999999999999877777642 1233588899999998888888888 4444
Q ss_pred hhcCHhHHHHHHHhhh
Q 024043 227 DEEDIAKFTDVVKEFD 242 (273)
Q Consensus 227 ~~~d~~~~~~~~~~~~ 242 (273)
+..+.+.++..+...+
T Consensus 247 ~dp~a~~ik~ql~~l~ 262 (269)
T PRK10941 247 EDPISEMIRAQIHSIE 262 (269)
T ss_pred CchhHHHHHHHHHHHh
Confidence 5566666766666544
No 360
>PF12854 PPR_1: PPR repeat
Probab=76.66 E-value=5.8 Score=21.95 Aligned_cols=25 Identities=8% Similarity=0.189 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHH
Q 024043 153 QCKQKVAQYAAELEQYHKSIEIYEE 177 (273)
Q Consensus 153 ~~~~~~a~~~~~~g~y~~A~~~~~~ 177 (273)
.+|..+-..+.+.|+.++|.++|++
T Consensus 8 ~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 8 VTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 4677888888999999999988865
No 361
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=76.09 E-value=11 Score=25.23 Aligned_cols=34 Identities=21% Similarity=0.214 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 024043 30 EDAADLFDKAANSFKLAKSWDKAGATYVKLANCHL 64 (273)
Q Consensus 30 ~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~ 64 (273)
+.|..+..+| .-.-..|++++|+.+|.+|++.+.
T Consensus 4 ~~A~~l~~~A-v~~D~~g~y~eA~~~Y~~aie~l~ 37 (75)
T cd02678 4 QKAIELVKKA-IEEDNAGNYEEALRLYQHALEYFM 37 (75)
T ss_pred HHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHH
Confidence 3455555553 555667777777777777777764
No 362
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=76.03 E-value=30 Score=25.83 Aligned_cols=65 Identities=8% Similarity=0.071 Sum_probs=49.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCc--ccH-------HHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 024043 115 YKEIAELYESEHNIEQTIVFFEKAADMFQNEEVT--TSA-------NQCKQKVAQYAAELEQYHKSIEIYEEIA 179 (273)
Q Consensus 115 l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~--~~~-------~~~~~~~a~~~~~~g~y~~A~~~~~~~~ 179 (273)
+..+|....+.+++-.++-+|++|+.+.++.... ... .....++|..+...|+.+=.++|++-+.
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlAS 77 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLAS 77 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHH
Confidence 4566777778899999999999999999876311 111 1334678888899999999999988774
No 363
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=75.92 E-value=45 Score=27.81 Aligned_cols=78 Identities=15% Similarity=0.160 Sum_probs=47.7
Q ss_pred CChhHHHHHHHHHHHHHHhc-----C-----CHHHHHHHHHHHHHHHhc-cCC-cccHHHHHHHHHHHH-HHhcCHHHHH
Q 024043 106 GRLSMAARYYKEIAELYESE-----H-----NIEQTIVFFEKAADMFQN-EEV-TTSANQCKQKVAQYA-AELEQYHKSI 172 (273)
Q Consensus 106 g~~~~~a~~l~~lg~~~~~~-----g-----~~~~A~~~y~~Al~~~~~-~~~-~~~~~~~~~~~a~~~-~~~g~y~~A~ 172 (273)
.+.....-.+...|..|... | -.++|...|++|.++... ... .+..-....+.+..+ ..+|+.++|+
T Consensus 110 ~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~ 189 (236)
T PF00244_consen 110 TSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAI 189 (236)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHH
T ss_pred cchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 34444444455556555443 2 237899999999999987 332 122234445555554 4589999999
Q ss_pred HHHHHHHHHHh
Q 024043 173 EIYEEIARQSL 183 (273)
Q Consensus 173 ~~~~~~~~~~~ 183 (273)
++.+++....+
T Consensus 190 ~ia~~afd~a~ 200 (236)
T PF00244_consen 190 EIAKQAFDEAI 200 (236)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998865433
No 364
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=75.67 E-value=3.9 Score=37.40 Aligned_cols=92 Identities=13% Similarity=0.098 Sum_probs=57.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhh
Q 024043 115 YKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKG 194 (273)
Q Consensus 115 l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~ 194 (273)
+.+-+.-.....+++.|+..|.+|+++-... +..+.+-+..+++.++|..|+.-..+++...+. ..+
T Consensus 7 ~k~ean~~l~~~~fd~avdlysKaI~ldpnc------a~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~------~~K- 73 (476)
T KOG0376|consen 7 LKNEANEALKDKVFDVAVDLYSKAIELDPNC------AIYFANRALAHLKVESFGGALHDALKAIELDPT------YIK- 73 (476)
T ss_pred hhhHHhhhcccchHHHHHHHHHHHHhcCCcc------eeeechhhhhheeechhhhHHHHHHhhhhcCch------hhh-
Confidence 3344444555589999999999999986422 233445557788888999999988888754322 122
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 024043 195 HLLNAGICQLCKGDVVAITNALERY 219 (273)
Q Consensus 195 ~~~~~gl~~l~~gd~~~A~~~~~~~ 219 (273)
.|++-|.++...+.+.+|...|+..
T Consensus 74 ~Y~rrg~a~m~l~~~~~A~~~l~~~ 98 (476)
T KOG0376|consen 74 AYVRRGTAVMALGEFKKALLDLEKV 98 (476)
T ss_pred eeeeccHHHHhHHHHHHHHHHHHHh
Confidence 2233344445555555555555543
No 365
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.36 E-value=1e+02 Score=31.66 Aligned_cols=84 Identities=13% Similarity=0.158 Sum_probs=47.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHH---HHHHHhcCChhHHHHHHHHH
Q 024043 42 SFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQA---VNMFCDIGRLSMAARYYKEI 118 (273)
Q Consensus 42 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~eA~~~~~~A---l~~~~~~g~~~~~a~~l~~l 118 (273)
.|...|-+++-+..++.++ |-.+.-.-.+.+++.+|.+-.|++-.++++-- +.+ .+.=+...++..|..+
T Consensus 1288 ~Yq~rGyFeElIsl~Ea~L------GLERAHMgmfTELaiLYskykp~km~EHl~LFwsRvNi-pKviRA~eqahlW~El 1360 (1666)
T KOG0985|consen 1288 YYQDRGYFEELISLLEAGL------GLERAHMGMFTELAILYSKYKPEKMMEHLKLFWSRVNI-PKVIRAAEQAHLWSEL 1360 (1666)
T ss_pred HHHhcCcHHHHHHHHHhhh------chhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHH
Confidence 3445555555555555444 33344455788999999887777766665421 111 1111223456677777
Q ss_pred HHHHHhcCCHHHHH
Q 024043 119 AELYESEHNIEQTI 132 (273)
Q Consensus 119 g~~~~~~g~~~~A~ 132 (273)
-.+|.+-..|+.|.
T Consensus 1361 vfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1361 VFLYDKYEEYDNAA 1374 (1666)
T ss_pred HHHHHhhhhhhHHH
Confidence 77776655555543
No 366
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=74.93 E-value=8.1 Score=21.89 Aligned_cols=23 Identities=13% Similarity=0.208 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHH
Q 024043 154 CKQKVAQYAAELEQYHKSIEIYE 176 (273)
Q Consensus 154 ~~~~~a~~~~~~g~y~~A~~~~~ 176 (273)
.+..+|-.+...|+|++|+..|+
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHH
Confidence 46678889999999999999955
No 367
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=74.90 E-value=61 Score=28.77 Aligned_cols=134 Identities=15% Similarity=0.075 Sum_probs=86.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhc-CChhHHHHHHHH
Q 024043 40 ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI-GRLSMAARYYKE 117 (273)
Q Consensus 40 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~-g~~~~~a~~l~~ 117 (273)
..+|...++|.+|+..-...+.=.+++++......++..-..+|... +..+|...+.-|-...-.. -.|..+|..-..
T Consensus 135 i~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLq 214 (411)
T KOG1463|consen 135 IRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQ 214 (411)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHh
Confidence 45677778888888877777766677777655555554445555544 4555555444332211111 145666777777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHH
Q 024043 118 IAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIE 173 (273)
Q Consensus 118 lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~ 173 (273)
-|.+|....+|.-|..||-+|.|-|...+++..+..++.-+-.+-+-++..++--.
T Consensus 215 SGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~ 270 (411)
T KOG1463|consen 215 SGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAA 270 (411)
T ss_pred ccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 77888777899999999999999998888776666666655555555555554443
No 368
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=74.21 E-value=2 Score=37.61 Aligned_cols=90 Identities=11% Similarity=0.053 Sum_probs=67.2
Q ss_pred HHHHHhccCHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHH
Q 024043 79 AAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKV 158 (273)
Q Consensus 79 ~~~~~~~~~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~ 158 (273)
+...+....+++|+++|..|+.+.. ..|..+.+-+.++..+..+..|+.-|..|+++-.+.... +---
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~lnp------~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~------ykfr 188 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIELNP------PLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKG------YKFR 188 (377)
T ss_pred HHHHhcCcchhhhhcccccccccCC------chhhhcccccceeeeccCCchhhhhhhhhhccCcccccc------cchh
Confidence 3444445578999999999987754 445688888999999999999999999999998765432 2222
Q ss_pred HHHHHHhcCHHHHHHHHHHHHH
Q 024043 159 AQYAAELEQYHKSIEIYEEIAR 180 (273)
Q Consensus 159 a~~~~~~g~y~~A~~~~~~~~~ 180 (273)
|....-+|++.+|...+..+..
T Consensus 189 g~A~rllg~~e~aa~dl~~a~k 210 (377)
T KOG1308|consen 189 GYAERLLGNWEEAAHDLALACK 210 (377)
T ss_pred hHHHHHhhchHHHHHHHHHHHh
Confidence 4445667788888888887753
No 369
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=73.57 E-value=7.4 Score=21.19 Aligned_cols=14 Identities=29% Similarity=0.802 Sum_probs=7.5
Q ss_pred CHHHHHHHHHHHHH
Q 024043 127 NIEQTIVFFEKAAD 140 (273)
Q Consensus 127 ~~~~A~~~y~~Al~ 140 (273)
++.+|+.+|++|.+
T Consensus 20 d~~~A~~~~~~Aa~ 33 (36)
T smart00671 20 DLEKALEYYKKAAE 33 (36)
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555555543
No 370
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=73.05 E-value=26 Score=23.65 Aligned_cols=18 Identities=17% Similarity=0.217 Sum_probs=12.3
Q ss_pred CHHHHHHHHHHHHHHHHh
Q 024043 87 SSNEAISCLEQAVNMFCD 104 (273)
Q Consensus 87 ~~~eA~~~~~~Al~~~~~ 104 (273)
++++|+.+|..|++.+..
T Consensus 21 ~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 21 RYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 677777777777776644
No 371
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.95 E-value=58 Score=31.19 Aligned_cols=67 Identities=13% Similarity=-0.023 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHH--------HHHhccch--hhh----chhhHHHHHHHHHHhcCCHHHHHHHHHH
Q 024043 153 QCKQKVAQYAAELEQYHKSIEIYEEIA--------RQSLNNNL--LKY----GVKGHLLNAGICQLCKGDVVAITNALER 218 (273)
Q Consensus 153 ~~~~~~a~~~~~~g~y~~A~~~~~~~~--------~~~~~~~~--~~~----~~~~~~~~~gl~~l~~gd~~~A~~~~~~ 218 (273)
.=|.++|++....|++..|.++|.++- ....|+.. ... ........+.+|++..||+++..+.+..
T Consensus 667 ~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 667 VKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHcCCHHHHHHHHHh
Confidence 348899999999999999999999872 11222210 000 0001122345677778887766665555
Q ss_pred H
Q 024043 219 Y 219 (273)
Q Consensus 219 ~ 219 (273)
-
T Consensus 747 t 747 (794)
T KOG0276|consen 747 T 747 (794)
T ss_pred c
Confidence 3
No 372
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=72.22 E-value=27 Score=35.83 Aligned_cols=109 Identities=10% Similarity=0.038 Sum_probs=65.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-------hcc----CHHHHHHHHHHHHHHHHhcCCh
Q 024043 40 ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCY-------KKT----SSNEAISCLEQAVNMFCDIGRL 108 (273)
Q Consensus 40 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~-------~~~----~~~eA~~~~~~Al~~~~~~g~~ 108 (273)
|.+|...|...+|++||.+|..-.- . ...+..+..-. .++ -...|+.||.+++.++.+.
T Consensus 927 g~~yl~tge~~kAl~cF~~a~Sg~g---e----~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~h--- 996 (1480)
T KOG4521|consen 927 GIAYLGTGEPVKALNCFQSALSGFG---E----GNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEH--- 996 (1480)
T ss_pred heeeecCCchHHHHHHHHHHhhccc---c----HHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHh---
Confidence 5566677888888888888875532 1 12333332220 011 2345677888877776554
Q ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 024043 109 SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEE 177 (273)
Q Consensus 109 ~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~ 177 (273)
+..+.+++...+|++....+. .+.+.+...+=.-+..+|.+-+|.+..-+
T Consensus 997 -----------------n~~E~vcQlA~~AIe~l~dd~--ps~a~~~t~vFnhhldlgh~~qAy~ai~~ 1046 (1480)
T KOG4521|consen 997 -----------------NHAEEVCQLAVKAIENLPDDN--PSVALISTTVFNHHLDLGHWFQAYKAILR 1046 (1480)
T ss_pred -----------------ccHHHHHHHHHHHHHhCCCcc--hhHHHHHHHHHHhhhchhhHHHHHHHHHc
Confidence 556777777777777665443 23344445555556677888877765433
No 373
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=72.20 E-value=88 Score=32.35 Aligned_cols=107 Identities=16% Similarity=0.174 Sum_probs=48.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HHHHHcCCHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Q 024043 24 LFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLA------NCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQ 97 (273)
Q Consensus 24 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~------~~~~~~~~~~~aa~~~~~~~~~~~~~~~~eA~~~~~~ 97 (273)
+++++.+.=-..|.-=+.-+...+.|++|+-+|++++ .+++..+++.++......+.. .-++-..+-+.
T Consensus 930 ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql~~-----~~de~~~~a~~ 1004 (1265)
T KOG1920|consen 930 LYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKLEKALKAYKECGDWREALSLAAQLSE-----GKDELVILAEE 1004 (1265)
T ss_pred eeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccHHHHHHHHHHhccHHHHHHHHHhhcC-----CHHHHHHHHHH
Confidence 3445544444444444444555555555555554333 333344444443332221110 23333333344
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 024043 98 AVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADM 141 (273)
Q Consensus 98 Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~ 141 (273)
-+....+.+.+..+|+++. +..+++++|+..|-+|-++
T Consensus 1005 L~s~L~e~~kh~eAa~il~------e~~sd~~~av~ll~ka~~~ 1042 (1265)
T KOG1920|consen 1005 LVSRLVEQRKHYEAAKILL------EYLSDPEEAVALLCKAKEW 1042 (1265)
T ss_pred HHHHHHHcccchhHHHHHH------HHhcCHHHHHHHHhhHhHH
Confidence 4444445555444444332 2236666666666555444
No 374
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=71.97 E-value=78 Score=28.76 Aligned_cols=147 Identities=12% Similarity=0.097 Sum_probs=83.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 024043 60 ANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKA 138 (273)
Q Consensus 60 ~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~A 138 (273)
++-++...-....-.++..+|.-|... +.+.|+++|-++-+.....+. ....+.++=.+-...|++.....+-.+|
T Consensus 137 Lk~yK~n~iKEsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~kh---vInm~ln~i~VSI~~~nw~hv~sy~~~A 213 (466)
T KOG0686|consen 137 LKSYKDNLIKESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKH---VINMCLNLILVSIYMGNWGHVLSYISKA 213 (466)
T ss_pred HHHhhcchhhHHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHH---HHHHHHHHHHHHHhhcchhhhhhHHHHH
Confidence 333333333455567788899988866 999999999997777665554 3444444444445557777666666666
Q ss_pred HHHH---hccCC-cccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHH
Q 024043 139 ADMF---QNEEV-TTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAI 212 (273)
Q Consensus 139 l~~~---~~~~~-~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A 212 (273)
...- +.... ... ....-.|.....+++|..|..+|-.+....-..+ .-....+.-...|+|-++.=|..+-
T Consensus 214 ~st~~~~~~~~q~v~~--kl~C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~-~ivtpsdv~iYggLcALAtfdr~~L 288 (466)
T KOG0686|consen 214 ESTPDANENLAQEVPA--KLKCAAGLANLLLKKYKSAAKYFLLAEFDHCDYP-EIVTPSDVAIYGGLCALATFDRQDL 288 (466)
T ss_pred HhCchhhhhHHHhcCc--chHHHHHHHHHHHHHHHHHHHHHHhCCCCccCcc-ceecchhhHHHHhhHhhccCCHHHH
Confidence 5442 11111 111 2333445556667799999999987742111110 0011112223457777776665443
No 375
>PF05470 eIF-3c_N: Eukaryotic translation initiation factor 3 subunit 8 N-terminus; InterPro: IPR008905 The largest of the mammalian translation initiation factors, eIF3, consists of at least eight subunits ranging in mass from 35 to 170 kDa. eIF3 binds to the 40 S ribosome in an early step of translation initiation and promotes the binding of methionyl-tRNAi and mRNA [].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation, 0005852 eukaryotic translation initiation factor 3 complex
Probab=71.17 E-value=1e+02 Score=29.70 Aligned_cols=57 Identities=11% Similarity=0.194 Sum_probs=38.4
Q ss_pred HhcCHHHHHHHHHHHH-HHHhc--cchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043 164 ELEQYHKSIEIYEEIA-RQSLN--NNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ 220 (273)
Q Consensus 164 ~~g~y~~A~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~ 220 (273)
--|+|.+|..++.... ...+. +..++.-....+..+|+|....|.+.+|..++.+.+
T Consensus 468 L~d~~~~ARDllLmShlqe~I~~~D~~tQILyNR~~vQLGLcAFR~G~I~eah~~L~el~ 527 (595)
T PF05470_consen 468 LHDRYYEARDLLLMSHLQESIQHSDISTQILYNRAMVQLGLCAFRAGLIKEAHQCLSELC 527 (595)
T ss_pred HHhhHHHHHHHHHHhHHHHhhhccCHHHHHHHhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3478999998877663 22222 222222223344568999999999999999999865
No 376
>KOG3024 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.60 E-value=69 Score=27.59 Aligned_cols=131 Identities=16% Similarity=0.138 Sum_probs=65.3
Q ss_pred cCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 024043 66 LESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQN 144 (273)
Q Consensus 66 ~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~ 144 (273)
.|++.++=..|.-+..-|-.. .++.|++..-..+..+-+.+....++.....+..+++. ..+....-...+..++.
T Consensus 19 ~~d~Yeahqm~RTl~fR~~~~K~~~~aieL~~~ga~~ffk~~Q~~saaDl~~~~le~~ek-a~~ad~~~~~anl~~ll-- 95 (312)
T KOG3024|consen 19 LGDYYEAHQMYRTLVFRYTRQKAHEDAIELLYDGALCFFKLKQRGSAADLLVLVLEVLEK-AEVADSLLKVANLAELL-- 95 (312)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHH-HHhhHhHHHHHHHHHHH--
Confidence 446666666666666666554 66777776555555555555555566666666666555 11221222222233333
Q ss_pred cCCcccHHHHHHHHHHHHHHhcCHHHHHH-HHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHH
Q 024043 145 EEVTTSANQCKQKVAQYAAELEQYHKSIE-IYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALE 217 (273)
Q Consensus 145 ~~~~~~~~~~~~~~a~~~~~~g~y~~A~~-~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~ 217 (273)
...+.-+.... +.++++.-+.+-...++|......-++.....-+++..|+++|-
T Consensus 96 ------------------~e~~~~eper~~~v~raikWS~~~~~~k~G~p~lH~~la~~l~~e~~~~~a~~HFl 151 (312)
T KOG3024|consen 96 ------------------GEADPSEPERKTFVRRAIKWSKEFGEGKYGHPELHALLADKLWTEDNVEEARRHFL 151 (312)
T ss_pred ------------------hhcCCCccHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcccHHHHHhHhh
Confidence 33322222222 22333322222112355666555555666666677777777654
No 377
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=70.26 E-value=31 Score=28.78 Aligned_cols=75 Identities=15% Similarity=0.076 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHhcc---C--------HHHHHHHHHHHHHHHHh---cCChhHHHHHHHHHHHHHHhcCCHHHHHHH
Q 024043 69 KHEAAQAYVDAAHCYKKT---S--------SNEAISCLEQAVNMFCD---IGRLSMAARYYKEIAELYESEHNIEQTIVF 134 (273)
Q Consensus 69 ~~~aa~~~~~~~~~~~~~---~--------~~eA~~~~~~Al~~~~~---~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~ 134 (273)
....+-.+..-|+.|+-. . .++|.++|++|.++... .-+|...+-+++-.-..|+..|++++|++.
T Consensus 112 ~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~i 191 (236)
T PF00244_consen 112 PESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEI 191 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHH
T ss_pred hhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 333333344456666544 1 26799999999999987 346777788888877788888999999999
Q ss_pred HHHHHHHHh
Q 024043 135 FEKAADMFQ 143 (273)
Q Consensus 135 y~~Al~~~~ 143 (273)
.++|++-.-
T Consensus 192 a~~afd~a~ 200 (236)
T PF00244_consen 192 AKQAFDEAI 200 (236)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887654
No 378
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=69.95 E-value=66 Score=30.47 Aligned_cols=91 Identities=15% Similarity=0.173 Sum_probs=67.4
Q ss_pred CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHhccCC-cccHHHHHHHHHHHHH
Q 024043 87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE--HNIEQTIVFFEKAADMFQNEEV-TTSANQCKQKVAQYAA 163 (273)
Q Consensus 87 ~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~--g~~~~A~~~y~~Al~~~~~~~~-~~~~~~~~~~~a~~~~ 163 (273)
+-.+-...-++-+-+.-+.|....=..++.++|.+-+.. ..-..+++.|.+|+...+.--+ .+- .-|.-+|..+.
T Consensus 252 d~~e~~~lqq~lLw~lyd~ghl~~YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~Hv--YPYty~gg~~y 329 (618)
T PF05053_consen 252 DSVELAQLQQDLLWLLYDMGHLARYPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHHV--YPYTYLGGYYY 329 (618)
T ss_dssp EEHHHHHHHHHHHHHHHHTTTTTT-HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT--S--HHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhcCchhhCchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCcc--ccceehhhHHH
Confidence 556777777888888888898888888899999888765 3345679999999988776532 222 34677888899
Q ss_pred HhcCHHHHHHHHHHHH
Q 024043 164 ELEQYHKSIEIYEEIA 179 (273)
Q Consensus 164 ~~g~y~~A~~~~~~~~ 179 (273)
+.++|.+|+..+-.+.
T Consensus 330 R~~~~~eA~~~Wa~aa 345 (618)
T PF05053_consen 330 RHKRYREALRSWAEAA 345 (618)
T ss_dssp HTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999888875
No 379
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=69.49 E-value=19 Score=23.88 Aligned_cols=35 Identities=17% Similarity=0.219 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 024043 30 EDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLK 65 (273)
Q Consensus 30 ~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~ 65 (273)
+.|..+..+ |.-.-..|++++|+.+|..|++.+..
T Consensus 4 ~~a~~l~~~-Av~~D~~g~~~~Al~~Y~~a~e~l~~ 38 (75)
T cd02656 4 QQAKELIKQ-AVKEDEDGNYEEALELYKEALDYLLQ 38 (75)
T ss_pred HHHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 445554433 45555667777777777777777653
No 380
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=68.57 E-value=32 Score=28.95 Aligned_cols=54 Identities=9% Similarity=-0.025 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHh---cCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 024043 89 NEAISCLEQAVNMFCD---IGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMF 142 (273)
Q Consensus 89 ~eA~~~~~~Al~~~~~---~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~ 142 (273)
++|.++|+.|.++... .-+|.+.+-+|+---..|+-++++++|++..++|.+-.
T Consensus 145 ~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~A 201 (244)
T smart00101 145 ENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA 201 (244)
T ss_pred HHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 4678888888887654 44566667677766667777788888887776666543
No 381
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=68.37 E-value=25 Score=23.40 Aligned_cols=34 Identities=26% Similarity=0.250 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 024043 30 EDAADLFDKAANSFKLAKSWDKAGATYVKLANCHL 64 (273)
Q Consensus 30 ~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~ 64 (273)
+.|..+..+ |.-.-..|++++|+.+|.++++.+.
T Consensus 6 ~~A~~li~~-Av~~d~~g~~~eAl~~Y~~a~e~l~ 39 (77)
T smart00745 6 SKAKELISK-ALKADEAGDYEEALELYKKAIEYLL 39 (77)
T ss_pred HHHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 444444433 3445556667777777766666654
No 382
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=67.63 E-value=83 Score=27.36 Aligned_cols=91 Identities=14% Similarity=0.189 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCH
Q 024043 89 NEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQY 168 (273)
Q Consensus 89 ~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y 168 (273)
++-++-+.+.+.-....+--...+.++.++|..|.+.++.+.+.++..+.+.-.-..|-.....-|..++|.+|..+.=.
T Consensus 92 eeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV 171 (412)
T COG5187 92 EEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVV 171 (412)
T ss_pred HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHH
Confidence 44555565555555554445667889999999999999999999999998887777777667777888889888776555
Q ss_pred HHHHHHHHHHH
Q 024043 169 HKSIEIYEEIA 179 (273)
Q Consensus 169 ~~A~~~~~~~~ 179 (273)
.+.++.....+
T Consensus 172 ~e~lE~~~~~i 182 (412)
T COG5187 172 EESLEVADDII 182 (412)
T ss_pred HHHHHHHHHHH
Confidence 55555444443
No 383
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=66.65 E-value=75 Score=26.47 Aligned_cols=103 Identities=15% Similarity=0.130 Sum_probs=56.6
Q ss_pred cCCHHHHHHHHHHHHHHHHHcCCHHH------HHHHHHHHHHHH-hccCHHHHHHHHHHHHHHHHhcCCh-hHHHHHHHH
Q 024043 46 AKSWDKAGATYVKLANCHLKLESKHE------AAQAYVDAAHCY-KKTSSNEAISCLEQAVNMFCDIGRL-SMAARYYKE 117 (273)
Q Consensus 46 ~~~~~~A~~~~~~a~~~~~~~~~~~~------aa~~~~~~~~~~-~~~~~~eA~~~~~~Al~~~~~~g~~-~~~a~~l~~ 117 (273)
.|+|+.|++...-|++.-..+.+... .+.-....+... ....+-+ ..+.+....+-..-.-+ .-.|+.+.-
T Consensus 96 ~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e-~~~~~~~~~l~~~~dmpd~vrAKl~K~ 174 (230)
T PHA02537 96 IGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVE-PYFLRVFLDLTTEWDMPDEVRAKLYKA 174 (230)
T ss_pred ccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 57888888888888777655543211 111122222222 1111111 01222222232222222 234777888
Q ss_pred HHHHH---------HhcCCHHHHHHHHHHHHHHHhccCCcc
Q 024043 118 IAELY---------ESEHNIEQTIVFFEKAADMFQNEEVTT 149 (273)
Q Consensus 118 lg~~~---------~~~g~~~~A~~~y~~Al~~~~~~~~~~ 149 (273)
+|..+ ...+++.+|+.++++|+++....|-..
T Consensus 175 ~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~GVK~ 215 (230)
T PHA02537 175 AGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCGVKK 215 (230)
T ss_pred HHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCChHH
Confidence 88877 344788999999999999998877543
No 384
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=66.16 E-value=9.5 Score=19.77 Aligned_cols=26 Identities=12% Similarity=0.388 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH
Q 024043 154 CKQKVAQYAAELEQYHKSIEIYEEIA 179 (273)
Q Consensus 154 ~~~~~a~~~~~~g~y~~A~~~~~~~~ 179 (273)
++..+-..+.+.|++++|.+.|++..
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHh
Confidence 35667778888999999999988764
No 385
>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains. This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f
Probab=64.55 E-value=84 Score=27.87 Aligned_cols=38 Identities=24% Similarity=0.199 Sum_probs=22.5
Q ss_pred CHHHHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHHHHHc
Q 024043 28 KYEDAADLFDKAANSFKLAK---------SWDKAGATYVKLANCHLKL 66 (273)
Q Consensus 28 ~~~~A~~~~~~a~~~~~~~~---------~~~~A~~~~~~a~~~~~~~ 66 (273)
.||.|.-+|+-++. +...+ ....|..+|++|+-++.-+
T Consensus 115 ~fEka~vlfNiaal-~s~la~~~~~~~~eglK~A~~~fq~AAG~F~~l 161 (346)
T cd09240 115 GYEKVCVLFNIAAL-QSQIAAEQNLDTDEGLKLAAKLFQQAAGIFNHL 161 (346)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 45666666665432 22211 1567888888888887643
No 386
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=64.48 E-value=13 Score=19.65 Aligned_cols=26 Identities=8% Similarity=0.234 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH
Q 024043 154 CKQKVAQYAAELEQYHKSIEIYEEIA 179 (273)
Q Consensus 154 ~~~~~a~~~~~~g~y~~A~~~~~~~~ 179 (273)
+++.+-..+.+.|++++|.++|.+..
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~ 27 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEML 27 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 35566778899999999999998864
No 387
>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 (also known as PalA) and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Bro1, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind comp
Probab=64.15 E-value=60 Score=28.89 Aligned_cols=38 Identities=21% Similarity=0.293 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHHHHHc
Q 024043 29 YEDAADLFDKAANSFKL--------AKSWDKAGATYVKLANCHLKL 66 (273)
Q Consensus 29 ~~~A~~~~~~a~~~~~~--------~~~~~~A~~~~~~a~~~~~~~ 66 (273)
||.|.-+|+-++..-.. .....+|..+|++|+-++.-+
T Consensus 103 fEka~VLfNigal~sq~a~~~~~~~~~glK~A~~~fq~AAG~F~~l 148 (355)
T cd09241 103 FERANILYNLGALYSQLALSENRYTDEGLKRACSYFQASAGCFEYI 148 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 67777666654332111 123677888888888887643
No 388
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=63.78 E-value=1.2e+02 Score=27.68 Aligned_cols=131 Identities=16% Similarity=0.033 Sum_probs=74.2
Q ss_pred hhHHHHHHHHHHhhcc----c--------cCCCCCHHHHHHHHHHH---------H--HH---HHHcCCHHHHHHHHHHH
Q 024043 6 ARAEEFEKKAEKKLNG----W--------GLFGSKYEDAADLFDKA---------A--NS---FKLAKSWDKAGATYVKL 59 (273)
Q Consensus 6 ~~a~~l~~~Aek~~k~----~--------~~~~~~~~~A~~~~~~a---------~--~~---~~~~~~~~~A~~~~~~a 59 (273)
..|.++-+++.|++.+ + ...-|+|+.|-.-|+.. | .+ -+..|..+-|..+-+.+
T Consensus 101 ~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~A 180 (531)
T COG3898 101 SLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERA 180 (531)
T ss_pred HHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHH
Confidence 4566777777776652 1 12348999999888853 1 12 23567888888887777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 024043 60 ANCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGR---LSMAARYYKEIAELYESEHNIEQTIVFFE 136 (273)
Q Consensus 60 ~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~eA~~~~~~Al~~~~~~g~---~~~~a~~l~~lg~~~~~~g~~~~A~~~y~ 136 (273)
......+. .++.+ -+...+...|.+.|++..+.......-..+ ...+ ..+.--+..... .++..|...-.
T Consensus 181 a~~Ap~l~---WA~~A--tLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rA-vLLtAkA~s~ld-adp~~Ar~~A~ 253 (531)
T COG3898 181 AEKAPQLP---WAARA--TLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRA-VLLTAKAMSLLD-ADPASARDDAL 253 (531)
T ss_pred HhhccCCc---hHHHH--HHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHH-HHHHHHHHHHhc-CChHHHHHHHH
Confidence 76654443 22222 234445556788888887666554432222 2222 222222222222 56777777777
Q ss_pred HHHHHHh
Q 024043 137 KAADMFQ 143 (273)
Q Consensus 137 ~Al~~~~ 143 (273)
+|+.+-.
T Consensus 254 ~a~KL~p 260 (531)
T COG3898 254 EANKLAP 260 (531)
T ss_pred HHhhcCC
Confidence 7666643
No 389
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=63.76 E-value=1.2e+02 Score=27.69 Aligned_cols=123 Identities=15% Similarity=0.161 Sum_probs=68.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc---CCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---HHh---c
Q 024043 114 YYKEIAELYESEHNIEQTIVFFEKAADMFQNE---EVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIAR---QSL---N 184 (273)
Q Consensus 114 ~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~---~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~---~~~---~ 184 (273)
++..+..++..+|||..|++..+- +++-... ..+.-...++..+|-+|.-+++|.+|++.|..++. +.- .
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~ 202 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYH 202 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 455667788888999999987642 2221110 11122235678889999999999999999999851 111 0
Q ss_pred cch------hhhchhhHHHHHHHHHH-hcCCHHH--HHHHHHHHHHHHHHHhhcCHhHHHHHH
Q 024043 185 NNL------LKYGVKGHLLNAGICQL-CKGDVVA--ITNALERYQDIAASMDEEDIAKFTDVV 238 (273)
Q Consensus 185 ~~~------~~~~~~~~~~~~gl~~l-~~gd~~~--A~~~~~~~~~ll~a~~~~d~~~~~~~~ 238 (273)
... .+...+ .+.-+.+|+. +-...++ ....-++|.+=+..+..||.+.|++.-
T Consensus 203 ~~~~q~d~i~K~~eq-MyaLlAic~~l~p~~lde~i~~~lkeky~ek~~kmq~gd~~~f~elF 264 (404)
T PF10255_consen 203 QRSYQYDQINKKNEQ-MYALLAICLSLCPQRLDESISSQLKEKYGEKMEKMQRGDEEAFEELF 264 (404)
T ss_pred cccchhhHHHhHHHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 000 011111 1112233432 2221211 122333455555667889999998854
No 390
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=63.32 E-value=24 Score=19.50 Aligned_cols=28 Identities=21% Similarity=0.406 Sum_probs=16.4
Q ss_pred HHHHHHH--HHHHhc-----CCHHHHHHHHHHHHH
Q 024043 113 RYYKEIA--ELYESE-----HNIEQTIVFFEKAAD 140 (273)
Q Consensus 113 ~~l~~lg--~~~~~~-----g~~~~A~~~y~~Al~ 140 (273)
.+...+| .+|..- .++++|+.+|++|.+
T Consensus 2 ~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~ 36 (39)
T PF08238_consen 2 EAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAE 36 (39)
T ss_dssp HHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhhhccCCccccccchHHHHHHHHH
Confidence 3455666 444442 146777777777765
No 391
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=62.90 E-value=17 Score=21.65 Aligned_cols=25 Identities=16% Similarity=0.290 Sum_probs=22.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 024043 116 KEIAELYESEHNIEQTIVFFEKAAD 140 (273)
Q Consensus 116 ~~lg~~~~~~g~~~~A~~~y~~Al~ 140 (273)
.+++..|...|+++.|.+..++.+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4688999999999999999998884
No 392
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=62.87 E-value=1e+02 Score=26.77 Aligned_cols=102 Identities=10% Similarity=0.173 Sum_probs=65.3
Q ss_pred HHHHHHHHHHhcc-C---HHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHhccCCc
Q 024043 74 QAYVDAAHCYKKT-S---SNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE-HNIEQTIVFFEKAADMFQNEEVT 148 (273)
Q Consensus 74 ~~~~~~~~~~~~~-~---~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~-g~~~~A~~~y~~Al~~~~~~~~~ 148 (273)
.+..+++.+|-.. + ..+-+...+.+.+-+.. ...+++...+-+-+... ..++..+......+++.......
T Consensus 46 ~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk----~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~ 121 (421)
T COG5159 46 ATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTK----PKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRK 121 (421)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcc----hhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888554 3 44455555555444432 23455555555555443 56888899999999888776553
Q ss_pred ccHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 024043 149 TSANQCKQKVAQYAAELEQYHKSIEIYEEIA 179 (273)
Q Consensus 149 ~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~ 179 (273)
...-..-.++..++.+.|+|.+|+......+
T Consensus 122 fLr~~Le~Kli~l~y~~~~YsdalalIn~ll 152 (421)
T COG5159 122 FLRLELECKLIYLLYKTGKYSDALALINPLL 152 (421)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 3333344677888999999999998766654
No 393
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=62.69 E-value=29 Score=23.31 Aligned_cols=33 Identities=21% Similarity=0.107 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 024043 31 DAADLFDKAANSFKLAKSWDKAGATYVKLANCHL 64 (273)
Q Consensus 31 ~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~ 64 (273)
+|+.+..+| .-.-..|+|++|..+|..+++.+.
T Consensus 5 ~A~~l~~~A-ve~d~~~~y~eA~~~Y~~~i~~~~ 37 (75)
T cd02677 5 QAAELIRLA-LEKEEEGDYEAAFEFYRAGVDLLL 37 (75)
T ss_pred HHHHHHHHH-HHHHHHhhHHHHHHHHHHHHHHHH
Confidence 344444443 223334556666666666665553
No 394
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=62.22 E-value=1.1e+02 Score=26.87 Aligned_cols=39 Identities=28% Similarity=0.230 Sum_probs=23.4
Q ss_pred CHHHHHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHHHHHc
Q 024043 28 KYEDAADLFDKAANSFKL---------AKSWDKAGATYVKLANCHLKL 66 (273)
Q Consensus 28 ~~~~A~~~~~~a~~~~~~---------~~~~~~A~~~~~~a~~~~~~~ 66 (273)
.||.+.-+|+-++..... ......|..+|.+|+-++.-+
T Consensus 107 ~fE~~~vLfn~aa~~s~~a~~~~~~~~~~~~k~A~~~fq~AAG~F~~l 154 (345)
T cd09034 107 RYELLSILFNLAALASQLANEKLITGSEEDLKQAIKSLQKAAGYFEYL 154 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 456666666554332221 134677888888888887643
No 395
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=62.12 E-value=46 Score=22.42 Aligned_cols=26 Identities=15% Similarity=0.018 Sum_probs=17.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHH
Q 024043 40 ANSFKLAKSWDKAGATYVKLANCHLK 65 (273)
Q Consensus 40 ~~~~~~~~~~~~A~~~~~~a~~~~~~ 65 (273)
+.-+-..|++.+|+.+|..++++..+
T Consensus 13 AVe~D~~gr~~eAi~~Y~~aIe~L~q 38 (75)
T cd02682 13 AVKAEKEGNAEDAITNYKKAIEVLSQ 38 (75)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 45556667777777777777766653
No 396
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=61.99 E-value=1.3e+02 Score=33.63 Aligned_cols=88 Identities=9% Similarity=0.047 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHhc-CChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCH
Q 024043 90 EAISCLEQAVNMFCDI-GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQY 168 (273)
Q Consensus 90 eA~~~~~~Al~~~~~~-g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y 168 (273)
+-+-.+++++-..... +-..+.+++|.+.|.+-+..|+++.|..+.-+|.+.- .+.+....|......|+-
T Consensus 1647 epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--------~~~i~~E~AK~lW~~gd~ 1718 (2382)
T KOG0890|consen 1647 EPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--------LPEIVLERAKLLWQTGDE 1718 (2382)
T ss_pred hHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--------cchHHHHHHHHHHhhccH
Confidence 4444455554433333 5577889999999999999999999999988877652 456788899999999999
Q ss_pred HHHHHHHHHHHHHHhcc
Q 024043 169 HKSIEIYEEIARQSLNN 185 (273)
Q Consensus 169 ~~A~~~~~~~~~~~~~~ 185 (273)
..|+..+++.+.....+
T Consensus 1719 ~~Al~~Lq~~l~~~~~~ 1735 (2382)
T KOG0890|consen 1719 LNALSVLQEILSKNFPD 1735 (2382)
T ss_pred HHHHHHHHHHHHhhccc
Confidence 99999999998665544
No 397
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=61.54 E-value=1.3e+02 Score=27.43 Aligned_cols=66 Identities=11% Similarity=0.135 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH--HHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043 154 CKQKVAQYAAELEQYHKSIEIYEEIA--RQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ 220 (273)
Q Consensus 154 ~~~~~a~~~~~~g~y~~A~~~~~~~~--~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~ 220 (273)
++..+..+++-+|+|..|++..+-+- ...+=... .......++.+|-+|+.++.+..|.+.|..-.
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V-~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKV-PACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccC-cchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555568889999999999987762 11110000 01122345678999999999999999998855
No 398
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.40 E-value=1.5e+02 Score=27.90 Aligned_cols=76 Identities=9% Similarity=-0.035 Sum_probs=64.6
Q ss_pred hcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc-CCcccHHHHHHHHHHHHHHhcC-HHHHHHHHHHHH
Q 024043 104 DIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE-EVTTSANQCKQKVAQYAAELEQ-YHKSIEIYEEIA 179 (273)
Q Consensus 104 ~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~-~~~~~~~~~~~~~a~~~~~~g~-y~~A~~~~~~~~ 179 (273)
...|.+...--+.-+|.++..+|+...|..+|...++-.... .++.-.+.++..+|.++..+|. ..++.+++.++-
T Consensus 441 ~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr 518 (546)
T KOG3783|consen 441 KIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAR 518 (546)
T ss_pred CCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHH
Confidence 445888888889999999999999999999999999774433 3456667899999999999988 999999999984
No 399
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=60.38 E-value=1.4e+02 Score=27.50 Aligned_cols=138 Identities=11% Similarity=0.031 Sum_probs=78.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHH-HH----HHHHHHHHHHHhcc-----------CHHHHHHHHHHHH--
Q 024043 38 KAANSFKLAKSWDKAGATYVKLANCHLKLESKH-EA----AQAYVDAAHCYKKT-----------SSNEAISCLEQAV-- 99 (273)
Q Consensus 38 ~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~a----a~~~~~~~~~~~~~-----------~~~eA~~~~~~Al-- 99 (273)
.-|..+.....|++|+.++..|-+.|-..+... +. +-.-..+..||... +...|..+|.++.
T Consensus 168 ekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~syGe 247 (568)
T KOG2561|consen 168 EKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFERSYGE 247 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhhhhhh
Confidence 447888888999999999999988886554321 11 11112334455433 2344555555442
Q ss_pred ---HHHH-hcCChhHHHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHH--------HHHH
Q 024043 100 ---NMFC-DIGRLSMAAR---YYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQ--------YAAE 164 (273)
Q Consensus 100 ---~~~~-~~g~~~~~a~---~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~--------~~~~ 164 (273)
.++. +-|+....|- .+.-=|.+...+|+-++|.++++.|...+-+..-+...-..+..+|. +...
T Consensus 248 nl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~elki~d~~lsllv~mGfeesdaRlaLRsc 327 (568)
T KOG2561|consen 248 NLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLELKINDETLSLLVGMGFEESDARLALRSC 327 (568)
T ss_pred hhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHeeccchHHHHHHHcCCCchHHHHHHHhc
Confidence 1222 2233333322 23344777778899999999999999887765433222233333331 2223
Q ss_pred hcCHHHHHHHH
Q 024043 165 LEQYHKSIEIY 175 (273)
Q Consensus 165 ~g~y~~A~~~~ 175 (273)
.|+.+.|+.+.
T Consensus 328 ~g~Vd~AvqfI 338 (568)
T KOG2561|consen 328 NGDVDSAVQFI 338 (568)
T ss_pred cccHHHHHHHH
Confidence 46777777655
No 400
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=60.16 E-value=13 Score=30.93 Aligned_cols=53 Identities=13% Similarity=0.199 Sum_probs=42.9
Q ss_pred CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 024043 87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE 145 (273)
Q Consensus 87 ~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~ 145 (273)
|.+-|.+.|.+|+++..+- +..|..+|...++.|+.+.|...|++.+++-..+
T Consensus 10 D~~aaaely~qal~lap~w------~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 10 DAEAAAELYNQALELAPEW------AAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred ChHHHHHHHHHHhhcCchh------hhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 7788888888888876543 3478889999999999999999999998886544
No 401
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=59.89 E-value=93 Score=25.24 Aligned_cols=103 Identities=15% Similarity=0.107 Sum_probs=59.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhch--hhH
Q 024043 118 IAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGV--KGH 195 (273)
Q Consensus 118 lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~--~~~ 195 (273)
.+......|++++|...+++|.+......+....-.-+...|.+-..+..|-+|.-.|.-.-.....++ ...++ ..+
T Consensus 35 ~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~~~ps~-~EL~V~~~~Y 113 (204)
T COG2178 35 EAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDGRLPSP-EELGVPPIAY 113 (204)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCCH-HHcCCCHHHH
Confidence 344445558999999999999998887653222222233445555566789999887765532222211 01111 122
Q ss_pred HHH----------HHHHHHhcCCHHHHHHHHHHHHH
Q 024043 196 LLN----------AGICQLCKGDVVAITNALERYQD 221 (273)
Q Consensus 196 ~~~----------~gl~~l~~gd~~~A~~~~~~~~~ 221 (273)
++. ..+.-+..|+++.|.+.++-..+
T Consensus 114 ilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 114 ILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 222 22233557888888888776543
No 402
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.75 E-value=84 Score=31.56 Aligned_cols=72 Identities=13% Similarity=0.143 Sum_probs=46.4
Q ss_pred CHHHHHHH--HHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHH
Q 024043 87 SSNEAISC--LEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAE 164 (273)
Q Consensus 87 ~~~eA~~~--~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~ 164 (273)
+++-|++| ++-|++..++.++ ..+|..+|+.-..+|+..-|..+|++-- .+.++.-+|.-
T Consensus 649 RF~LaLe~gnle~ale~akkldd----~d~w~rLge~Al~qgn~~IaEm~yQ~~k--------------nfekLsfLYli 710 (1202)
T KOG0292|consen 649 RFELALECGNLEVALEAAKKLDD----KDVWERLGEEALRQGNHQIAEMCYQRTK--------------NFEKLSFLYLI 710 (1202)
T ss_pred heeeehhcCCHHHHHHHHHhcCc----HHHHHHHHHHHHHhcchHHHHHHHHHhh--------------hhhheeEEEEE
Confidence 56667776 4667777777766 4578888888888888888888886532 23344445555
Q ss_pred hcCHHHHHHHHH
Q 024043 165 LEQYHKSIEIYE 176 (273)
Q Consensus 165 ~g~y~~A~~~~~ 176 (273)
.|+.++=.++..
T Consensus 711 Tgn~eKL~Km~~ 722 (1202)
T KOG0292|consen 711 TGNLEKLSKMMK 722 (1202)
T ss_pred eCCHHHHHHHHH
Confidence 555555444433
No 403
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=59.01 E-value=77 Score=24.22 Aligned_cols=28 Identities=18% Similarity=0.183 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 024043 152 NQCKQKVAQYAAELEQYHKSIEIYEEIA 179 (273)
Q Consensus 152 ~~~~~~~a~~~~~~g~y~~A~~~~~~~~ 179 (273)
+..+.++|..|.++|+-.+|-+++.++-
T Consensus 120 p~~L~kia~Ay~klg~~r~~~ell~~AC 147 (161)
T PF09205_consen 120 PEFLVKIANAYKKLGNTREANELLKEAC 147 (161)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 4567777777777777777777777774
No 404
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=58.83 E-value=1.7e+02 Score=27.85 Aligned_cols=37 Identities=8% Similarity=-0.099 Sum_probs=21.5
Q ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 024043 28 KYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHL 64 (273)
Q Consensus 28 ~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~ 64 (273)
-|-++..++...+.++...|+..+|-..=.++..+++
T Consensus 281 iWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yE 317 (656)
T KOG1914|consen 281 IWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYE 317 (656)
T ss_pred HHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHH
Confidence 4556666666667777776665555444444444444
No 405
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=57.63 E-value=1.3e+02 Score=26.15 Aligned_cols=93 Identities=12% Similarity=0.098 Sum_probs=55.3
Q ss_pred ccCHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHH---------------HHHHHhccC---
Q 024043 85 KTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEK---------------AADMFQNEE--- 146 (273)
Q Consensus 85 ~~~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~---------------Al~~~~~~~--- 146 (273)
..++.+|...+..++....+.++ +...++.+|...|+.+.|...+.. .+++..+..
T Consensus 147 ~e~~~~a~~~~~~al~~~~~~~~------~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 147 AEDFGEAAPLLKQALQAAPENSE------AKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred ccchhhHHHHHHHHHHhCcccch------HHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 33666777777777666655543 555666666666666554443322 133332211
Q ss_pred -----------CcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhc
Q 024043 147 -----------VTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLN 184 (273)
Q Consensus 147 -----------~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~ 184 (273)
++ .-.+.-..+|..+...|+++.|++.+-..+.+..+
T Consensus 221 ~~~~l~~~~aadP-dd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~ 268 (304)
T COG3118 221 EIQDLQRRLAADP-DDVEAALALADQLHLVGRNEAALEHLLALLRRDRG 268 (304)
T ss_pred CHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 11 11256678888888899999999888777655443
No 406
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=56.60 E-value=43 Score=28.60 Aligned_cols=66 Identities=8% Similarity=0.098 Sum_probs=55.6
Q ss_pred CCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhc
Q 024043 126 HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYG 191 (273)
Q Consensus 126 g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~ 191 (273)
-.+..|.++..+|+-..+.-+++..++-|-...+..|+...+|+-|..+|..+......+.++.+.
T Consensus 53 ~~~~n~~e~~d~ALm~Ae~r~D~~~IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~d~L~~We 118 (368)
T COG5091 53 ATMENAKELLDKALMTAEGRGDRSKIGLVNFRYFVHFFNIKDYELAQSYFKKAKNLYVDDTLPLWE 118 (368)
T ss_pred cChhhHHHHHHHHHHhhhccCCcceeeeehhhhHHHhhhHHHHHHHHHHHHHHHHHhhcccchHHH
Confidence 457889999999999999999888888888899999999999999999999997666555444443
No 407
>cd09246 BRO1_Alix_like_1 Protein-interacting, N-terminal, Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro
Probab=56.27 E-value=1.3e+02 Score=26.81 Aligned_cols=38 Identities=24% Similarity=0.246 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHc
Q 024043 28 KYEDAADLFDKAANSFKLA---------KSWDKAGATYVKLANCHLKL 66 (273)
Q Consensus 28 ~~~~A~~~~~~a~~~~~~~---------~~~~~A~~~~~~a~~~~~~~ 66 (273)
.||.+.-+|+-++. +... ....+|..+|++|+-++.-+
T Consensus 107 ~fEka~vlfNiaal-~s~~a~~~~~~~~~glK~A~~~fq~AAG~F~~l 153 (353)
T cd09246 107 HFEKAAVLFNLGAL-SSQLGLQQDRTTAEGIKQACHAFQAAAGAFAHL 153 (353)
T ss_pred HHHHHHHHHHHHHH-HHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 57777777766433 2221 13678888888888888644
No 408
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=55.70 E-value=2.3e+02 Score=28.52 Aligned_cols=155 Identities=11% Similarity=0.026 Sum_probs=82.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 024043 40 ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEI 118 (273)
Q Consensus 40 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~l 118 (273)
+-.+-++|+.++|..+.+ +.......+ -..+.-+-.||++. ++++|+.+|++++.-|.. -..+..+
T Consensus 50 aLsl~r~gk~~ea~~~Le-~~~~~~~~D-----~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-------eell~~l 116 (932)
T KOG2053|consen 50 ALSLFRLGKGDEALKLLE-ALYGLKGTD-----DLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-------EELLYHL 116 (932)
T ss_pred HHHHHHhcCchhHHHHHh-hhccCCCCc-----hHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-------HHHHHHH
Confidence 345556888998884443 333322222 24566778899988 999999999999877654 1345555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHH---------HHHHHHHHHHHHhccchhh
Q 024043 119 AELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHK---------SIEIYEEIARQSLNNNLLK 189 (273)
Q Consensus 119 g~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~---------A~~~~~~~~~~~~~~~~~~ 189 (273)
=++|...+.|.+- =+-|+.+|...+.. .-..|.-+..++......+. |-.+.++.+... | . -
T Consensus 117 FmayvR~~~yk~q---Qkaa~~LyK~~pk~--~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~-g-k--~ 187 (932)
T KOG2053|consen 117 FMAYVREKSYKKQ---QKAALQLYKNFPKR--AYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKK-G-K--I 187 (932)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHhCCcc--cchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccC-C-c--c
Confidence 5666665666542 23355566554432 22333444444433333322 233344433222 1 1 1
Q ss_pred hchhhHHHHHHHHHHhcCCHHHHHHHHH
Q 024043 190 YGVKGHLLNAGICQLCKGDVVAITNALE 217 (273)
Q Consensus 190 ~~~~~~~~~~gl~~l~~gd~~~A~~~~~ 217 (273)
-+..+..+. .++...+|++.+|.+.+.
T Consensus 188 ~s~aE~~Ly-l~iL~~~~k~~eal~~l~ 214 (932)
T KOG2053|consen 188 ESEAEIILY-LLILELQGKYQEALEFLA 214 (932)
T ss_pred chHHHHHHH-HHHHHhcccHHHHHHHHH
Confidence 122222221 234456778888877763
No 409
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=55.68 E-value=26 Score=18.47 Aligned_cols=26 Identities=8% Similarity=0.250 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH
Q 024043 154 CKQKVAQYAAELEQYHKSIEIYEEIA 179 (273)
Q Consensus 154 ~~~~~a~~~~~~g~y~~A~~~~~~~~ 179 (273)
+|..+-..+.+.|+++.|..+|+.-.
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~ 28 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMK 28 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 56677788888999999999888764
No 410
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=53.79 E-value=79 Score=27.53 Aligned_cols=66 Identities=15% Similarity=0.123 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 024043 153 QCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDIAAS 225 (273)
Q Consensus 153 ~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~ll~a 225 (273)
..+...+..|...|.|.+|+++.++++.-.+=+. . .+..+..++-..||-..+...+++|...+++
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~e---~----~nk~lm~~la~~gD~is~~khyerya~vlea 345 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSE---Q----DNKGLMASLATLGDEISAIKHYERYAEVLEA 345 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhh---H----HHHHHHHHHHHhccchhhhhHHHHHHHHHHH
Confidence 4456667788899999999999999974322111 0 1122233455689988999999999866654
No 411
>PF13041 PPR_2: PPR repeat family
Probab=53.58 E-value=27 Score=20.83 Aligned_cols=29 Identities=3% Similarity=0.274 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 024043 153 QCKQKVAQYAAELEQYHKSIEIYEEIARQ 181 (273)
Q Consensus 153 ~~~~~~a~~~~~~g~y~~A~~~~~~~~~~ 181 (273)
.+++.+-..+.+.|++++|.++|++....
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 35777788899999999999999998643
No 412
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=53.56 E-value=1.7e+02 Score=26.39 Aligned_cols=56 Identities=20% Similarity=0.087 Sum_probs=40.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc---CHHHHHHHHH
Q 024043 40 ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT---SSNEAISCLE 96 (273)
Q Consensus 40 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~---~~~eA~~~~~ 96 (273)
+..+...++|..|...|..+..-- -.++....-..+..+..+|..+ ++.+|.++++
T Consensus 137 ~r~l~n~~dy~aA~~~~~~L~~r~-l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 137 ARRAINAFDYLFAHARLETLLRRL-LSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHHHhcChHHHHHHHHHHHhcc-cChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 345666789999999888887542 1123344566777888888666 8999999998
No 413
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=53.37 E-value=1.6e+02 Score=26.10 Aligned_cols=84 Identities=10% Similarity=0.117 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHH
Q 024043 92 ISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKS 171 (273)
Q Consensus 92 ~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A 171 (273)
++.|..-+.-+...=++.......... .++.++.++|+++.++-++-......+.....+...+|.++...|+..++
T Consensus 58 l~lY~NFvsefe~kINplslvei~l~~---~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~ 134 (380)
T KOG2908|consen 58 LQLYLNFVSEFETKINPLSLVEILLVV---SEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEI 134 (380)
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHH---HHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHH
Confidence 344444444443333444433333322 23336899999999999999988877767778888999999999999999
Q ss_pred HHHHHHH
Q 024043 172 IEIYEEI 178 (273)
Q Consensus 172 ~~~~~~~ 178 (273)
.+.....
T Consensus 135 kk~ldd~ 141 (380)
T KOG2908|consen 135 KKLLDDL 141 (380)
T ss_pred HHHHHHH
Confidence 9887776
No 414
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=53.36 E-value=56 Score=28.39 Aligned_cols=61 Identities=20% Similarity=0.217 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 024043 113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIA 179 (273)
Q Consensus 113 ~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~ 179 (273)
+.+...+..|...|.+.+|+++.++++.+.+-.. ..+..+-.++..+|+--.|++.|++..
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~e------~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSE------QDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhh------HHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3566778888888999999999999998865332 345556677888899889999888874
No 415
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.15 E-value=1.1e+02 Score=30.37 Aligned_cols=49 Identities=6% Similarity=0.050 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhcCChhHH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 024043 94 CLEQAVNMFCDIGRLSMA-ARYYKEIAELYESEHNIEQTIVFFEKAADMF 142 (273)
Q Consensus 94 ~~~~Al~~~~~~g~~~~~-a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~ 142 (273)
.|.-|+.+....+..... +.+...-|..+...|++++|+.+|-+++...
T Consensus 349 ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l 398 (933)
T KOG2114|consen 349 LYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL 398 (933)
T ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC
Confidence 344555555555444332 4444455555555555555555555554443
No 416
>cd09239 BRO1_HD-PTP_like Protein-interacting, N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP) and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. HD-PTP participates in cell migration and endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-l
Probab=51.24 E-value=1.7e+02 Score=26.22 Aligned_cols=38 Identities=21% Similarity=0.175 Sum_probs=22.0
Q ss_pred CHHHHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHHHHHc
Q 024043 28 KYEDAADLFDKAANSFKLAK---------SWDKAGATYVKLANCHLKL 66 (273)
Q Consensus 28 ~~~~A~~~~~~a~~~~~~~~---------~~~~A~~~~~~a~~~~~~~ 66 (273)
.||.|.-+|+-++ +|.+.+ ....|..+|++|+-++.-+
T Consensus 110 ~fEka~vlfNiga-l~sq~a~~~~r~~~~glK~A~~~fq~AAG~F~~l 156 (361)
T cd09239 110 KFEEASVLYNIGA-LHSQLGASDKRDSEEGMKVACTHFQCAAWAFAYL 156 (361)
T ss_pred HHHHHHHHHHHHH-HHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHH
Confidence 5666666665533 233222 2566777888877777543
No 417
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=48.91 E-value=1.1e+02 Score=22.71 Aligned_cols=117 Identities=13% Similarity=0.122 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcc-CHHHHHHHHHHHHHHHHhcCCh---hHHHHHHHHHHHHHHhcCC
Q 024043 53 GATYVKLANCHLKLESKHEAAQAYVDAAHCY-KKT-SSNEAISCLEQAVNMFCDIGRL---SMAARYYKEIAELYESEHN 127 (273)
Q Consensus 53 ~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~-~~~-~~~eA~~~~~~Al~~~~~~g~~---~~~a~~l~~lg~~~~~~g~ 127 (273)
...|++.+..+...+||...-.-|..-..=. ... ....-...+++++..+...... .+--+++...+... .
T Consensus 5 r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~---~- 80 (126)
T PF08311_consen 5 RQEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLS---S- 80 (126)
T ss_dssp HHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTB---S-
T ss_pred HHHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHc---c-
Confidence 3445555555543445544444443333222 221 3344556777777777544222 22223333333321 2
Q ss_pred HHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 024043 128 IEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIA 179 (273)
Q Consensus 128 ~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~ 179 (273)
.+.+.|... ...+-....+..+...|.++...|++.+|.++|+..+
T Consensus 81 --~~~~if~~l----~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 --DPREIFKFL----YSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp --HHHHHHHHH----HHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred --CHHHHHHHH----HHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 334444321 1222234556788999999999999999999998753
No 418
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=48.22 E-value=1.2e+02 Score=26.13 Aligned_cols=64 Identities=16% Similarity=0.081 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 024043 152 NQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDI 222 (273)
Q Consensus 152 ~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~l 222 (273)
..++.+++..+...|+++.+++.+++.+...+-+ .. .+..+...+...|+...|.+.+++...+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~------E~-~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYD------EP-AYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccc------hH-HHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 4667788888888889999999988887544332 21 3455666788889988888888886643
No 419
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.12 E-value=2.5e+02 Score=26.59 Aligned_cols=72 Identities=7% Similarity=-0.044 Sum_probs=52.8
Q ss_pred cHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCC-HHHHHHHHHHHHH
Q 024043 150 SANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGD-VVAITNALERYQD 221 (273)
Q Consensus 150 ~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd-~~~A~~~~~~~~~ 221 (273)
...--+.-+|.++..+|+...|..+|..............|-...+++.++..++..|. ..+++..+.+.++
T Consensus 447 d~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~ 519 (546)
T KOG3783|consen 447 DEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKARE 519 (546)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHh
Confidence 33344577889999999999999999998755433333346666778888888888777 7778877777654
No 420
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=48.05 E-value=91 Score=21.60 Aligned_cols=28 Identities=7% Similarity=-0.003 Sum_probs=13.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 024043 114 YYKEIAELYESEHNIEQTIVFFEKAADM 141 (273)
Q Consensus 114 ~l~~lg~~~~~~g~~~~A~~~y~~Al~~ 141 (273)
+...+|..+...|++++|++.+-+.+..
T Consensus 24 ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 24 ARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4444455555555555555555444433
No 421
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=47.75 E-value=56 Score=23.72 Aligned_cols=37 Identities=22% Similarity=0.228 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC
Q 024043 110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEE 146 (273)
Q Consensus 110 ~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~ 146 (273)
+.|..+...|..+...|+.+.|..+|-+.+.+++...
T Consensus 36 rsa~~l~~~A~~~~~egd~E~AYvl~~R~~~L~~ki~ 72 (115)
T PF08969_consen 36 RSANKLLREAEEYRQEGDEEQAYVLYMRYLTLVEKIP 72 (115)
T ss_dssp HHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCHC
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh
Confidence 3455677778999999999999999999999995443
No 422
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=46.82 E-value=1.1e+02 Score=22.29 Aligned_cols=89 Identities=9% Similarity=0.181 Sum_probs=46.1
Q ss_pred HHHhccCHHHHHHHHHHHHHHHHhcCCh----hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCC-cccHHHHH
Q 024043 81 HCYKKTSSNEAISCLEQAVNMFCDIGRL----SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEV-TTSANQCK 155 (273)
Q Consensus 81 ~~~~~~~~~eA~~~~~~Al~~~~~~g~~----~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~-~~~~~~~~ 155 (273)
.++.++++-+|++..+..+....+..+. ..++.....+|... .+++-=..++.-+++-|.+... .+..+..+
T Consensus 5 ~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~t---en~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 5 DYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKT---ENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred HHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhc---cCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 3455568888999888887766555442 22333444444433 3455445555555555554332 12334444
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHH
Q 024043 156 QKVAQYAAELEQYHKSIEIYEEIA 179 (273)
Q Consensus 156 ~~~a~~~~~~g~y~~A~~~~~~~~ 179 (273)
..+| +--....+|++++
T Consensus 82 ~~la-------~~l~s~~~Ykk~v 98 (111)
T PF04781_consen 82 FELA-------SQLGSVKYYKKAV 98 (111)
T ss_pred HHHH-------HHhhhHHHHHHHH
Confidence 4444 4444444555443
No 423
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=46.67 E-value=1.8e+02 Score=24.52 Aligned_cols=53 Identities=11% Similarity=0.103 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHhc-cC--CcccHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHH
Q 024043 128 IEQTIVFFEKAADMFQN-EE--VTTSANQCKQKVAQYAA-ELEQYHKSIEIYEEIARQ 181 (273)
Q Consensus 128 ~~~A~~~y~~Al~~~~~-~~--~~~~~~~~~~~~a~~~~-~~g~y~~A~~~~~~~~~~ 181 (273)
.++|.+.|++|.++... .. +|... ....+.+..|. -++++++|+++-+++...
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirL-gLaLN~SVF~yEI~~~~~~A~~lAk~afd~ 200 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRL-GLALNFSVFYYEILNSPDRACNLAKQAFDE 200 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46899999999999775 22 23222 33445555444 469999999888877543
No 424
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=46.45 E-value=1.1e+02 Score=23.45 Aligned_cols=65 Identities=11% Similarity=0.084 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhcc----CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 024043 73 AQAYVDAAHCYKKT----SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADM 141 (273)
Q Consensus 73 a~~~~~~~~~~~~~----~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~ 141 (273)
..+..+++.+.-.. +..+.+.+++..+. ...+...-.++.-++..+..+++|+.++.|...-++.
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~----~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLK----SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhh----hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 34455666666444 67788888887654 4555666678888999999999999999998766554
No 425
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=45.48 E-value=2.7e+02 Score=26.31 Aligned_cols=74 Identities=18% Similarity=0.197 Sum_probs=45.1
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH--------------HHHHH
Q 024043 160 QYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ--------------DIAAS 225 (273)
Q Consensus 160 ~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~--------------~ll~a 225 (273)
++....+.|.+++..+++-+...- .-++.....-..||+.+|++.+.... .|+.-
T Consensus 154 ~vl~n~~~~Ge~~~~lEk~Le~i~-----------~~l~qf~~lt~~Gd~ieA~evl~~~ee~~~~L~~~~e~IP~L~~e 222 (570)
T COG4477 154 DVLANRHQYGEAAPELEKKLENIE-----------EELSQFVELTSSGDYIEAREVLEEAEEHMIALRSIMERIPSLLAE 222 (570)
T ss_pred HHHHhhhhhhhhhHHHHHHHHHHH-----------HHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777777776542211 11233344566789999988887654 45555
Q ss_pred HhhcCHhHHHHHHHhhhcc
Q 024043 226 MDEEDIAKFTDVVKEFDSM 244 (273)
Q Consensus 226 ~~~~d~~~~~~~~~~~~~~ 244 (273)
++..-|+.+++.-.-|..+
T Consensus 223 ~~~~lP~ql~~Lk~Gyr~m 241 (570)
T COG4477 223 LQTELPGQLQDLKAGYRDM 241 (570)
T ss_pred HHhhchHHHHHHHHHHHHH
Confidence 6666667777766666544
No 426
>PF12309 KBP_C: KIF-1 binding protein C terminal; InterPro: IPR022083 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein.
Probab=45.38 E-value=2.3e+02 Score=25.48 Aligned_cols=60 Identities=17% Similarity=0.102 Sum_probs=34.2
Q ss_pred HhhHHHHHHHHHHhhc-cccCCC--CCHHHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHH
Q 024043 5 IARAEEFEKKAEKKLN-GWGLFG--SKYEDAADLFDKAANSFKLA----KSWDKAGATYVKLANCHL 64 (273)
Q Consensus 5 ~~~a~~l~~~Aek~~k-~~~~~~--~~~~~A~~~~~~a~~~~~~~----~~~~~A~~~~~~a~~~~~ 64 (273)
.++|..++..+.+.++ ...+|. |...+-+++....+.+|+.. ++.+.-+..+.+-+++.+
T Consensus 140 f~dAr~vF~~~~~~l~~A~~yf~ld~~~t~hv~I~qd~S~lYk~LafFE~~~~r~~kmhkRR~d~Le 206 (371)
T PF12309_consen 140 FDDAREVFLNGQKWLNKAKEYFVLDGFVTDHVQILQDISELYKYLAFFEEDPDRQIKMHKRRADLLE 206 (371)
T ss_pred hHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Confidence 5677777777777776 222333 44444444444555555543 456666666666666655
No 427
>COG1516 FliS Flagellin-specific chaperone FliS [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=45.16 E-value=1.1e+02 Score=23.02 Aligned_cols=38 Identities=16% Similarity=0.199 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Q 024043 29 YEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLE 67 (273)
Q Consensus 29 ~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 67 (273)
|+.+.+.+.+ +......+++.+..+...++.++...+.
T Consensus 28 yeg~l~~l~~-A~~aie~~~i~~k~~~i~ka~~Ii~eL~ 65 (132)
T COG1516 28 YEGALKFLKR-AKEAIEQEDIEEKNESIDKAIDIITELR 65 (132)
T ss_pred HHHHHHHHHH-HHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 4455554444 4445556677777777777777776443
No 428
>KOG1938 consensus Protein with predicted involvement in meiosis (GSG1) [Cell cycle control, cell division, chromosome partitioning]
Probab=44.00 E-value=2.8e+02 Score=28.14 Aligned_cols=94 Identities=6% Similarity=-0.055 Sum_probs=57.6
Q ss_pred CHHHHHHHHHHHHHHH-HhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHh
Q 024043 87 SSNEAISCLEQAVNMF-CDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAEL 165 (273)
Q Consensus 87 ~~~eA~~~~~~Al~~~-~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~ 165 (273)
++..|+-.+..++..- .+.+.+...+.-..-.|..+..-|.+..|+.+|.+|+..+...+........+..++..|.-.
T Consensus 290 dl~~allleqaal~f~~tkp~m~~ktffHpVLal~r~s~anqp~ha~R~y~~ai~v~~~~~ws~~edh~~f~i~~~y~l~ 369 (960)
T KOG1938|consen 290 DLLSALLLEQAALCFGSTKPPMPRKTFFHPVLALIRFSSANQPKHALRCYRQAIPVLKKPTWSFAEDHLYFTILHVYLLC 369 (960)
T ss_pred hhhhHHHHHHHHHHhhcCCCCccchhhcceeehhhhcccCCChhHHHHHHHHHhhhcCCCCcchhHHhHHHhHHHhhhhh
Confidence 4555655555554433 134444444444455566666667899999999999999987765444445556666644332
Q ss_pred cCHHHHHHHHHHHHHH
Q 024043 166 EQYHKSIEIYEEIARQ 181 (273)
Q Consensus 166 g~y~~A~~~~~~~~~~ 181 (273)
.-+.|.+.+.+.+..
T Consensus 370 -~~D~a~~~f~~~i~~ 384 (960)
T KOG1938|consen 370 -QEDDADEEFSKLIAD 384 (960)
T ss_pred -cchhHHHHHHHHHhh
Confidence 336677777776543
No 429
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=42.60 E-value=48 Score=28.99 Aligned_cols=18 Identities=22% Similarity=0.540 Sum_probs=13.6
Q ss_pred CCHHHHHHHHHHHHHHHh
Q 024043 126 HNIEQTIVFFEKAADMFQ 143 (273)
Q Consensus 126 g~~~~A~~~y~~Al~~~~ 143 (273)
++|++|..+|+.|+++|.
T Consensus 24 ~nY~eA~~lY~~aleYF~ 41 (439)
T KOG0739|consen 24 KNYEEALRLYQNALEYFL 41 (439)
T ss_pred hchHHHHHHHHHHHHHHH
Confidence 777777777777777764
No 430
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.53 E-value=2.7e+02 Score=25.82 Aligned_cols=103 Identities=8% Similarity=-0.002 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHH
Q 024043 131 TIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVV 210 (273)
Q Consensus 131 A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~ 210 (273)
|..+.+..-.--........-+..+..++.++.+.|++++|-+++.... .-++....+...+++..+...-....++-
T Consensus 501 aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~--~~~~~ip~~p~lnAm~El~d~a~~~~sps 578 (625)
T KOG4422|consen 501 AADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFL--RKHNKIPRSPLLNAMAELMDSAKVSNSPS 578 (625)
T ss_pred HHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHH--hcCCcCCCCcchhhHHHHHHHHHhcCCHH
Q ss_pred HHHHHHHHHH----HHHHHHhhcCHhHHH
Q 024043 211 AITNALERYQ----DIAASMDEEDIAKFT 235 (273)
Q Consensus 211 ~A~~~~~~~~----~ll~a~~~~d~~~~~ 235 (273)
+|..+++-.. ...+.+-++-.++|.
T Consensus 579 qA~~~lQ~a~~~n~~~~E~La~RI~e~f~ 607 (625)
T KOG4422|consen 579 QAIEVLQLASAFNLPICEGLAQRIMEDFA 607 (625)
T ss_pred HHHHHHHHHHHcCchhhhHHHHHHHHhcC
No 431
>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 (also known as PalA) and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Bro1, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind comp
Probab=42.26 E-value=1.9e+02 Score=25.66 Aligned_cols=21 Identities=19% Similarity=0.322 Sum_probs=15.7
Q ss_pred CCHHHHHHHHHHHHHHHHHcC
Q 024043 27 SKYEDAADLFDKAANSFKLAK 47 (273)
Q Consensus 27 ~~~~~A~~~~~~a~~~~~~~~ 47 (273)
.....|..+|.+|+.+|....
T Consensus 129 ~glK~A~~~fq~AAG~F~~l~ 149 (355)
T cd09241 129 EGLKRACSYFQASAGCFEYIL 149 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 457788888888888877654
No 432
>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains. This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f
Probab=42.08 E-value=2.5e+02 Score=24.90 Aligned_cols=19 Identities=42% Similarity=0.478 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHcC
Q 024043 29 YEDAADLFDKAANSFKLAK 47 (273)
Q Consensus 29 ~~~A~~~~~~a~~~~~~~~ 47 (273)
...|..+|.+|+.+|....
T Consensus 144 lK~A~~~fq~AAG~F~~l~ 162 (346)
T cd09240 144 LKLAAKLFQQAAGIFNHLK 162 (346)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5678888888888876643
No 433
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=40.76 E-value=43 Score=20.66 Aligned_cols=47 Identities=17% Similarity=0.317 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhhcCHhHHHHHHHhhhccCCCchhHHHHHHHHHHhc
Q 024043 215 ALERYQDIAASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKL 262 (273)
Q Consensus 215 ~~~~~~~ll~a~~~~d~~~~~~~~~~~~~~~~ld~~~~~~l~~~~~~~ 262 (273)
++.+...++..+++++.. +.+++..|.....|-....+.|..+...+
T Consensus 4 ~~~~Le~Iv~~Le~~~~s-Ldes~~lyeeg~~l~~~c~~~L~~~e~~i 50 (53)
T PF02609_consen 4 AMERLEEIVEKLESGELS-LDESLKLYEEGMELIKKCQERLEEAEQKI 50 (53)
T ss_dssp HHHHHHHHHHHHHTT-S--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444556666665554 66666666655555555555555554443
No 434
>cd09247 BRO1_Alix_like_2 Protein-interacting Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro1 function in
Probab=40.50 E-value=2.6e+02 Score=24.74 Aligned_cols=17 Identities=18% Similarity=0.315 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHhcc
Q 024043 129 EQTIVFFEKAADMFQNE 145 (273)
Q Consensus 129 ~~A~~~y~~Al~~~~~~ 145 (273)
-++.++|++|.......
T Consensus 213 ~~~~~~y~~A~~~l~~~ 229 (346)
T cd09247 213 YGATQFLEEAKNVLRSL 229 (346)
T ss_pred HHHHHHHHHHHHHHHcc
Confidence 45667888888777653
No 435
>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome. The BRO1 domain of fungal and mammalian proteins binds with multivesicular body components (ESCRT-III proteins) such as yeast Snf7 and mammalian CHMP4b, and can function to target BRO1 domain-containing proteins to endosomes [, , ]. The BRO1 domain has a boomerang shape composed of 14 alpha-helices and 3 beta-sheets. It contains a TPR-like substructure in the central part []. The C terminus is less conserved. This domain is found in a number of signal transduction proteins. The Saccharomyces cerevisiae protein Bro1p is required for sorting endocytic cargo to the lumen of multivesicular bodies (MVBs). Alix appears to be the mammalian orthologue of Bro1p []. Alix is also involved in the ESCRT pathway, which facilitates membrane fission events during enveloped virus budding, multivesicular body formation, and cytokinesis. To promote HIV budding and cytokinesis, the ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex. The Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins [, ]. Likewise, the Homo sapiens Brox protein has a Bro1 domain. CHMP4 proteins are components of endosomal sorting complex required for transport III, via their Bro1 domains and to play roles in sorting of ubiquitinated cargoes []. Alix also binds to the nucleocapsid (NC) domain of HIV-1 Gag. Alix and the Bro1 domain can be specifically packaged into viral particles via the NC []. Myopic is the Drosophila homologue of the Bro1-domain tyrosine phosphatase HD-PTP, and it promotes the epidermal growth factor receptor (EGFR) signalling []. The Caenorhabditis elegans Bro1-domain protein, ALX-1, interacts with LIN-12/Notch. The EGO-2 protein also contains a Bro1 domain. Notch-type signalling mediates numerous inductive events during development [].; PDB: 2VSV_A 1ZB1_A 3UM3_A 3ULY_A 3R9M_A 3ZXP_A 3UM2_A 3UM0_A 3UM1_D 3RAU_B ....
Probab=40.09 E-value=86 Score=27.96 Aligned_cols=38 Identities=24% Similarity=0.230 Sum_probs=26.4
Q ss_pred CHHHHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHHHHH
Q 024043 28 KYEDAADLFDKAANSFKL--------AKSWDKAGATYVKLANCHLK 65 (273)
Q Consensus 28 ~~~~A~~~~~~a~~~~~~--------~~~~~~A~~~~~~a~~~~~~ 65 (273)
.||.|.-+|+-++..... ......|..+|.+|+-++.-
T Consensus 103 ~fE~a~vL~N~aa~~s~~a~~~~~~~~~~~k~A~~~fq~AAg~f~~ 148 (377)
T PF03097_consen 103 AFEKACVLFNIAALYSQLAASQNRSTDEGLKEACNYFQRAAGIFQY 148 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHH
Confidence 788999888876543332 23467788888888888753
No 436
>cd09242 BRO1_ScBro1_like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Rim20 (also known as PalA), Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1 participates in endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: Snf7 in the
Probab=39.64 E-value=2.7e+02 Score=24.67 Aligned_cols=38 Identities=24% Similarity=0.276 Sum_probs=26.9
Q ss_pred CHHHHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHHHHH
Q 024043 28 KYEDAADLFDKAANSFKL--------AKSWDKAGATYVKLANCHLK 65 (273)
Q Consensus 28 ~~~~A~~~~~~a~~~~~~--------~~~~~~A~~~~~~a~~~~~~ 65 (273)
.||.|.-+|+-++..-.. ......|..+|++|+-++.-
T Consensus 103 ~fEka~VLfNiaal~s~~A~~~~~~~~~~~K~A~~~fq~AAG~f~~ 148 (348)
T cd09242 103 AFEKASVLFNIGALLSQLAAEKYREDEDDLKEAITNLQQAAGCFQY 148 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHH
Confidence 678888888765432211 23589999999999998863
No 437
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.36 E-value=48 Score=23.80 Aligned_cols=33 Identities=24% Similarity=0.393 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC
Q 024043 114 YYKEIAELYESEHNIEQTIVFFEKAADMFQNEE 146 (273)
Q Consensus 114 ~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~ 146 (273)
....+|.+|...|+.++|++-|+.--.+|.+++
T Consensus 74 ~HAhLGlLys~~G~~e~a~~eFetEKalFPES~ 106 (121)
T COG4259 74 YHAHLGLLYSNSGKDEQAVREFETEKALFPESG 106 (121)
T ss_pred HHHHHHHHHhhcCChHHHHHHHHHhhhhCccch
Confidence 567899999999999999999999888888765
No 438
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=39.25 E-value=43 Score=24.83 Aligned_cols=30 Identities=13% Similarity=0.168 Sum_probs=24.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 024043 115 YKEIAELYESEHNIEQTIVFFEKAADMFQN 144 (273)
Q Consensus 115 l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~ 144 (273)
-..+|+.+...|++++|+.++-+|+.++.+
T Consensus 66 qV~lGE~L~~~G~~~~aa~hf~nAl~V~~q 95 (121)
T PF02064_consen 66 QVQLGEQLLAQGDYEEAAEHFYNALKVCPQ 95 (121)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 346788888889999999999999988854
No 439
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=39.08 E-value=2.6e+02 Score=24.79 Aligned_cols=49 Identities=14% Similarity=0.183 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhcc-CCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 024043 131 TIVFFEKAADMFQNE-EVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIA 179 (273)
Q Consensus 131 A~~~y~~Al~~~~~~-~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~ 179 (273)
.....-+|+-+.+.. ...+.-..+...+..+|..+|-.+.|.+.|...-
T Consensus 195 ~~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~ 244 (365)
T PF09797_consen 195 DSEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESLD 244 (365)
T ss_pred CHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhcC
Confidence 344455555554432 1112234677888899999999999999998873
No 440
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.70 E-value=2.1e+02 Score=27.65 Aligned_cols=78 Identities=15% Similarity=0.210 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchh
Q 024043 114 YYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVK 193 (273)
Q Consensus 114 ~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~ 193 (273)
...+++..++.+| +.++|+++......+ . .+..++|+++.|..+..++- +.
T Consensus 616 ~rt~va~Fle~~g-------~~e~AL~~s~D~d~r---F-------elal~lgrl~iA~~la~e~~-----s~------- 666 (794)
T KOG0276|consen 616 IRTKVAHFLESQG-------MKEQALELSTDPDQR---F-------ELALKLGRLDIAFDLAVEAN-----SE------- 666 (794)
T ss_pred hhhhHHhHhhhcc-------chHhhhhcCCChhhh---h-------hhhhhcCcHHHHHHHHHhhc-----ch-------
Confidence 3455666666655 445555565443321 1 34467788888888766651 11
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043 194 GHLLNAGICQLCKGDVVAITNALERYQ 220 (273)
Q Consensus 194 ~~~~~~gl~~l~~gd~~~A~~~~~~~~ 220 (273)
.-+-.+|.+.+..|++.-|.+|+.+..
T Consensus 667 ~Kw~~Lg~~al~~~~l~lA~EC~~~a~ 693 (794)
T KOG0276|consen 667 VKWRQLGDAALSAGELPLASECFLRAR 693 (794)
T ss_pred HHHHHHHHHHhhcccchhHHHHHHhhc
Confidence 012344555566666666666666543
No 441
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=37.96 E-value=3.3e+02 Score=25.21 Aligned_cols=107 Identities=13% Similarity=0.104 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcc-----cHHHHHHHHHHHHHHhcC----------HHHHHHHHH
Q 024043 112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTT-----SANQCKQKVAQYAAELEQ----------YHKSIEIYE 176 (273)
Q Consensus 112 a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~-----~~~~~~~~~a~~~~~~g~----------y~~A~~~~~ 176 (273)
+..+...|.+......|++|+.++-.|=+.|..-++.. +-+-.-..+-+||+.+.+ ...|.+.|.
T Consensus 163 glg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~ 242 (568)
T KOG2561|consen 163 GLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFE 242 (568)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhh
Confidence 45566777777777899999999999988887644321 112223455677777653 334555555
Q ss_pred HHH-H---H--HhccchhhhchhhHHHH----HHHHHHhcCCHHHHHHHHHHHH
Q 024043 177 EIA-R---Q--SLNNNLLKYGVKGHLLN----AGICQLCKGDVVAITNALERYQ 220 (273)
Q Consensus 177 ~~~-~---~--~~~~~~~~~~~~~~~~~----~gl~~l~~gd~~~A~~~~~~~~ 220 (273)
+.- . + .+..+. ...+..+++ -|.+..++|.-++|-++++...
T Consensus 243 ~syGenl~Rl~~lKg~~--spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~ 294 (568)
T KOG2561|consen 243 RSYGENLSRLRSLKGGQ--SPERALILRLELLQGVVAYHQGQRDEAYEALESAH 294 (568)
T ss_pred hhhhhhhHhhhhccCCC--ChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 541 1 1 111111 112222333 3677788898889999888755
No 442
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=37.83 E-value=1.4e+02 Score=20.70 Aligned_cols=31 Identities=13% Similarity=0.248 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 024043 152 NQCKQKVAQYAAELEQYHKSIEIYEEIARQS 182 (273)
Q Consensus 152 ~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~ 182 (273)
......+|..+...|+|++|++.+-.++...
T Consensus 22 ~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 22 LDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3678999999999999999999999987443
No 443
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.19 E-value=4.5e+02 Score=26.49 Aligned_cols=35 Identities=14% Similarity=0.223 Sum_probs=24.9
Q ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 024043 28 KYEDAADLFDKAANSFKLAKSWDKAGATYVKLANC 62 (273)
Q Consensus 28 ~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~ 62 (273)
+-+.-.++..+.|+-+...|++++|...|.+++..
T Consensus 363 d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 363 DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 44555667777777777788888888877776643
No 444
>PF04353 Rsd_AlgQ: Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ; InterPro: IPR007448 This family includes bacterial transcriptional regulators that are thought to act through an interaction with the conserved region 4 of the sigma(70) subunit of RNA polymerase. The Pseudomonas aeruginosa homologue, AlgQ, positively regulates virulence gene expression and is associated with the mucoid phenotype observed in P. aeruginosa isolates from cystic fibrosis patients.; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_A.
Probab=36.64 E-value=1.8e+02 Score=22.54 Aligned_cols=51 Identities=16% Similarity=0.186 Sum_probs=33.9
Q ss_pred HHHHHHHHHhcc--CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhc
Q 024043 75 AYVDAAHCYKKT--SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE 125 (273)
Q Consensus 75 ~~~~~~~~~~~~--~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~ 125 (273)
....+..+|-+. ..+.++++..+-.+.-....+...-..-+..+|+++..+
T Consensus 87 ~l~la~~lyp~i~~tTe~~l~FnDky~~~~~d~~~~~~l~~dLS~lGe~Le~R 139 (153)
T PF04353_consen 87 ALALANQLYPRIEETTEQALDFNDKYAEAAIDEDNLEELDQDLSRLGEALEER 139 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCccccchhHHHHHHHHHHHHHHHHHHH
Confidence 455566667655 567777777777776555566777777788888887764
No 445
>cd09242 BRO1_ScBro1_like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Rim20 (also known as PalA), Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1 participates in endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: Snf7 in the
Probab=35.85 E-value=3.1e+02 Score=24.28 Aligned_cols=33 Identities=27% Similarity=0.302 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHhcc----------CHHHHHHHHHHHHHHHH
Q 024043 71 EAAQAYVDAAHCYKKT----------SSNEAISCLEQAVNMFC 103 (273)
Q Consensus 71 ~aa~~~~~~~~~~~~~----------~~~eA~~~~~~Al~~~~ 103 (273)
+.+.++.++|-++... ...+|..+|++|..+|.
T Consensus 105 Eka~VLfNiaal~s~~A~~~~~~~~~~~K~A~~~fq~AAG~f~ 147 (348)
T cd09242 105 EKASVLFNIGALLSQLAAEKYREDEDDLKEAITNLQQAAGCFQ 147 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH
Confidence 5666666666666433 46789999999988875
No 446
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=35.78 E-value=1.6e+02 Score=26.40 Aligned_cols=64 Identities=6% Similarity=-0.004 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC-C-cccHHHHHHHHHHHHHHhcCHHHHHH
Q 024043 110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEE-V-TTSANQCKQKVAQYAAELEQYHKSIE 173 (273)
Q Consensus 110 ~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~-~-~~~~~~~~~~~a~~~~~~g~y~~A~~ 173 (273)
....-+...|.-+...++++.|...|..|..+..... . +..-+..+.-+|..+++.++....+-
T Consensus 39 ~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL 104 (400)
T KOG4563|consen 39 KTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVL 104 (400)
T ss_pred HHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444566667777777888888888888888876652 2 23445677778888877776665553
No 447
>PF01399 PCI: PCI domain; InterPro: IPR000717 A homology domain of unclear function, occurs in the C-terminal region of several regulatory components of the 26S proteasome as well as in other proteins. This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) []. Apparently, all of the characterised proteins containing PCI domains are parts of larger multi-protein complexes. Proteins with PCI domains include budding yeast proteasome regulatory components Rpn3(Sun2), Rpn5, Rpn6, Rpn7and Rpn9 []; mammalian proteasome regulatory components p55, p58 and p44.5, and translation initiation factor 3 complex subunits p110 and INT6 [, ]; Arabidopsis COP9 and FUS6/COP11 []; mammalian G-protein pathway suppressor GPS1, and several uncharacterised ORFs from plant, nematodes and mammals. The complete homology domain comprises approx. 200 residues, the highest conservation is found in the C-terminal half. Several of the proteins mentioned above have no detectable homology to the N-terminal half of the domain.; GO: 0005515 protein binding; PDB: 3TXM_A 3TXN_A 1UFM_A 3CHM_A 3T5X_A 3T5V_B.
Probab=35.63 E-value=43 Score=23.21 Aligned_cols=23 Identities=13% Similarity=0.520 Sum_probs=15.6
Q ss_pred HHHHHHHHhhcCHhHHHHHHHhh
Q 024043 219 YQDIAASMDEEDIAKFTDVVKEF 241 (273)
Q Consensus 219 ~~~ll~a~~~~d~~~~~~~~~~~ 241 (273)
|..+++++..||...|.+.+..+
T Consensus 3 ~~~l~~~~~~~~~~~~~~~l~~~ 25 (105)
T PF01399_consen 3 YSELLRAFRSGDLQEFEEFLEKH 25 (105)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHH
Confidence 34567777777777777777776
No 448
>cd09246 BRO1_Alix_like_1 Protein-interacting, N-terminal, Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro
Probab=34.97 E-value=3.3e+02 Score=24.23 Aligned_cols=20 Identities=25% Similarity=0.375 Sum_probs=15.5
Q ss_pred CHHHHHHHHHHHHHHHHHcC
Q 024043 28 KYEDAADLFDKAANSFKLAK 47 (273)
Q Consensus 28 ~~~~A~~~~~~a~~~~~~~~ 47 (273)
....|..+|.+|+.+|....
T Consensus 135 glK~A~~~fq~AAG~F~~l~ 154 (353)
T cd09246 135 GIKQACHAFQAAAGAFAHLR 154 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 57788888888888887654
No 449
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.73 E-value=57 Score=29.67 Aligned_cols=33 Identities=18% Similarity=0.295 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 024043 112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQN 144 (273)
Q Consensus 112 a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~ 144 (273)
|-+..+.|.+|.+.++.++|+.+|++++.+..+
T Consensus 22 A~~~V~~gl~~dE~~~~e~a~~~Ye~gl~~i~~ 54 (560)
T KOG2709|consen 22 AYASVEQGLCYDEVNDWENALAMYEKGLNLIVE 54 (560)
T ss_pred HHHHHHhhcchhhhcCHHHHHHHHHHHHHHHHh
Confidence 446678899999999999999999999998876
No 450
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=34.46 E-value=4.4e+02 Score=25.52 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=17.6
Q ss_pred HHHHHHHHHHH--HHhcCHHHHHHHHHHH
Q 024043 152 NQCKQKVAQYA--AELEQYHKSIEIYEEI 178 (273)
Q Consensus 152 ~~~~~~~a~~~--~~~g~y~~A~~~~~~~ 178 (273)
...+..+..++ ...|+|++|++..++.
T Consensus 503 ~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L 531 (613)
T PF04097_consen 503 FQLLLDLAEFFDLYHAGQYEQALDIIEKL 531 (613)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 34455555543 5678999999888776
No 451
>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome. The BRO1 domain of fungal and mammalian proteins binds with multivesicular body components (ESCRT-III proteins) such as yeast Snf7 and mammalian CHMP4b, and can function to target BRO1 domain-containing proteins to endosomes [, , ]. The BRO1 domain has a boomerang shape composed of 14 alpha-helices and 3 beta-sheets. It contains a TPR-like substructure in the central part []. The C terminus is less conserved. This domain is found in a number of signal transduction proteins. The Saccharomyces cerevisiae protein Bro1p is required for sorting endocytic cargo to the lumen of multivesicular bodies (MVBs). Alix appears to be the mammalian orthologue of Bro1p []. Alix is also involved in the ESCRT pathway, which facilitates membrane fission events during enveloped virus budding, multivesicular body formation, and cytokinesis. To promote HIV budding and cytokinesis, the ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex. The Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins [, ]. Likewise, the Homo sapiens Brox protein has a Bro1 domain. CHMP4 proteins are components of endosomal sorting complex required for transport III, via their Bro1 domains and to play roles in sorting of ubiquitinated cargoes []. Alix also binds to the nucleocapsid (NC) domain of HIV-1 Gag. Alix and the Bro1 domain can be specifically packaged into viral particles via the NC []. Myopic is the Drosophila homologue of the Bro1-domain tyrosine phosphatase HD-PTP, and it promotes the epidermal growth factor receptor (EGFR) signalling []. The Caenorhabditis elegans Bro1-domain protein, ALX-1, interacts with LIN-12/Notch. The EGO-2 protein also contains a Bro1 domain. Notch-type signalling mediates numerous inductive events during development [].; PDB: 2VSV_A 1ZB1_A 3UM3_A 3ULY_A 3R9M_A 3ZXP_A 3UM2_A 3UM0_A 3UM1_D 3RAU_B ....
Probab=34.03 E-value=3.1e+02 Score=24.39 Aligned_cols=20 Identities=25% Similarity=0.491 Sum_probs=12.5
Q ss_pred CCHHHHHHHHHHHHHHHHHc
Q 024043 27 SKYEDAADLFDKAANSFKLA 46 (273)
Q Consensus 27 ~~~~~A~~~~~~a~~~~~~~ 46 (273)
.+...|...|.+|+.+|...
T Consensus 130 ~~~k~A~~~fq~AAg~f~~l 149 (377)
T PF03097_consen 130 EGLKEACNYFQRAAGIFQYL 149 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 45566667777776666543
No 452
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=33.00 E-value=1.3e+02 Score=19.12 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHH
Q 024043 155 KQKVAQYAAELEQYHKSIEIYEEIA 179 (273)
Q Consensus 155 ~~~~a~~~~~~g~y~~A~~~~~~~~ 179 (273)
...+-.-+..+|+|++|.++..+..
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444555788999999999998885
No 453
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=31.80 E-value=8.3e+02 Score=27.94 Aligned_cols=85 Identities=13% Similarity=0.172 Sum_probs=57.2
Q ss_pred CCHHHHHHHHHHHHHHHhcc-CCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHH
Q 024043 126 HNIEQTIVFFEKAADMFQNE-EVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQL 204 (273)
Q Consensus 126 g~~~~A~~~y~~Al~~~~~~-~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l 204 (273)
.+..+-+-.+++++-..... +-....++||.+.|.+-...|+++.|..+.-.+...... +....-.-..+
T Consensus 1643 ~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~---------~i~~E~AK~lW 1713 (2382)
T KOG0890|consen 1643 FRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESRLP---------EIVLERAKLLW 1713 (2382)
T ss_pred HHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcccc---------hHHHHHHHHHH
Confidence 33455555566665444333 445678899999999999999999999988887543221 22233344456
Q ss_pred hcCCHHHHHHHHHHH
Q 024043 205 CKGDVVAITNALERY 219 (273)
Q Consensus 205 ~~gd~~~A~~~~~~~ 219 (273)
..||...|...++.-
T Consensus 1714 ~~gd~~~Al~~Lq~~ 1728 (2382)
T KOG0890|consen 1714 QTGDELNALSVLQEI 1728 (2382)
T ss_pred hhccHHHHHHHHHHH
Confidence 788888887777764
No 454
>cd09247 BRO1_Alix_like_2 Protein-interacting Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro1 function in
Probab=31.47 E-value=1.9e+02 Score=25.64 Aligned_cols=38 Identities=16% Similarity=0.095 Sum_probs=23.6
Q ss_pred CHHHHHHHHHHHHHHHHH----c--CCHHHHHHHHHHHHHHHHH
Q 024043 28 KYEDAADLFDKAANSFKL----A--KSWDKAGATYVKLANCHLK 65 (273)
Q Consensus 28 ~~~~A~~~~~~a~~~~~~----~--~~~~~A~~~~~~a~~~~~~ 65 (273)
.||.+.-+|+-+...-.. . .....|..+|.+|+-++.-
T Consensus 109 ~fE~~~vLfn~aa~~s~~A~~~~~~e~~K~A~~~l~~AAG~f~~ 152 (346)
T cd09247 109 RFELGMVLFLYGAALRERASEVLPTEDFKEAATHLRRAAGVFEF 152 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 566666666654322111 1 2477888999999988863
No 455
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.74 E-value=2.9e+02 Score=28.03 Aligned_cols=42 Identities=10% Similarity=0.072 Sum_probs=32.0
Q ss_pred CCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 024043 126 HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEI 178 (273)
Q Consensus 126 g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~ 178 (273)
|+.+.|++.. ...++ ..+|.++|..-..+|+.+-|--+|++.
T Consensus 657 gnle~ale~a-------kkldd----~d~w~rLge~Al~qgn~~IaEm~yQ~~ 698 (1202)
T KOG0292|consen 657 GNLEVALEAA-------KKLDD----KDVWERLGEEALRQGNHQIAEMCYQRT 698 (1202)
T ss_pred CCHHHHHHHH-------HhcCc----HHHHHHHHHHHHHhcchHHHHHHHHHh
Confidence 5555555544 34433 578999999999999999999999886
No 456
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=30.66 E-value=4.9e+02 Score=24.96 Aligned_cols=107 Identities=8% Similarity=0.040 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc---CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCC
Q 024043 51 KAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT---SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHN 127 (273)
Q Consensus 51 ~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~---~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~ 127 (273)
+-...-++.+.+....|....=--++.++|.+-.-. +-..+++.|.+|+...+..=+- ...-=|.-+|..|...++
T Consensus 255 e~~~lqq~lLw~lyd~ghl~~YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n-~HvYPYty~gg~~yR~~~ 333 (618)
T PF05053_consen 255 ELAQLQQDLLWLLYDMGHLARYPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNN-HHVYPYTYLGGYYYRHKR 333 (618)
T ss_dssp HHHHHHHHHHHHHHHTTTTTT-HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT---SHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHhcCchhhCchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcC-CccccceehhhHHHHHHH
Confidence 333344444444444443211122334444443322 4566788888888776654331 122235566666777799
Q ss_pred HHHHHHHHHHHHHHHhccCCcccHHHHHHHH
Q 024043 128 IEQTIVFFEKAADMFQNEEVTTSANQCKQKV 158 (273)
Q Consensus 128 ~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~ 158 (273)
|.+|+.+.-+|.++.+.-+-.+.-.++|..+
T Consensus 334 ~~eA~~~Wa~aa~Vi~~YnY~reDeEiYKEf 364 (618)
T PF05053_consen 334 YREALRSWAEAADVIRKYNYSREDEEIYKEF 364 (618)
T ss_dssp HHHHHHHHHHHHHHHTTSB--GGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcccCccHHHHHHHH
Confidence 9999999999999887654322223444433
No 457
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=30.47 E-value=4.6e+02 Score=24.53 Aligned_cols=139 Identities=8% Similarity=0.000 Sum_probs=0.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 024043 40 ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIA 119 (273)
Q Consensus 40 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg 119 (273)
|-+...++++.+|-..|.+..+-..........-.....+-++| +-+.++..+.-+...++.-- ..+....-.|
T Consensus 13 gf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAf----fl~nld~Me~~l~~l~~~~~--~s~~l~LF~~ 86 (549)
T PF07079_consen 13 GFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAF----FLNNLDLMEKQLMELRQQFG--KSAYLPLFKA 86 (549)
T ss_pred hHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHH----HHhhHHHHHHHHHHHHHhcC--CchHHHHHHH
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHH---------HHHHhcCHHHHHHHHHHHHHHHhc
Q 024043 120 ELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQ---------YAAELEQYHKSIEIYEEIARQSLN 184 (273)
Q Consensus 120 ~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~---------~~~~~g~y~~A~~~~~~~~~~~~~ 184 (273)
.+..+.+.|++|++.+..--+-......+.....+...+.+ +++++|+|.++..++.+.+.+.+.
T Consensus 87 L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llk 160 (549)
T PF07079_consen 87 LVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLK 160 (549)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhh
No 458
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.11 E-value=74 Score=31.72 Aligned_cols=53 Identities=15% Similarity=0.286 Sum_probs=36.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 024043 117 EIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEI 178 (273)
Q Consensus 117 ~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~ 178 (273)
.+-.+|...|+|+.|+++.... |.....++.+-|+.+++.++|..|.++|-+.
T Consensus 363 ~vWk~yLd~g~y~kAL~~ar~~---------p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t 415 (911)
T KOG2034|consen 363 DVWKTYLDKGEFDKALEIARTR---------PDALETVLLKQADFLFQDKEYLRAAEIYAET 415 (911)
T ss_pred HHHHHHHhcchHHHHHHhccCC---------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 4556777778887777765432 2333467788888888888888888766543
No 459
>PF14287 DUF4368: Domain of unknown function (DUF4368)
Probab=30.08 E-value=67 Score=21.30 Aligned_cols=33 Identities=27% Similarity=0.636 Sum_probs=25.4
Q ss_pred hhcCHhHHHHHHHhhhccCCCchhHHHHHHHHHHhc
Q 024043 227 DEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKL 262 (273)
Q Consensus 227 ~~~d~~~~~~~~~~~~~~~~ld~~~~~~l~~~~~~~ 262 (273)
...|.+.|-+.+.+|..+..|+|- ||+.+-+.|
T Consensus 9 ~~~d~~~Fi~~i~kYt~i~ELt~~---il~elIdkI 41 (71)
T PF14287_consen 9 KSEDVDKFIELIRKYTDITELTPE---ILNELIDKI 41 (71)
T ss_pred HHhhHHHHHHHHHHhCChhhCCHH---HHHHHHHeE
Confidence 457789999999999999999987 444444443
No 460
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.95 E-value=3e+02 Score=22.22 Aligned_cols=97 Identities=10% Similarity=0.090 Sum_probs=61.7
Q ss_pred HHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHH
Q 024043 76 YVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMA-ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQ 153 (273)
Q Consensus 76 ~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~-a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~ 153 (273)
...++.+.... +...|+.+|.++..-- .-|... -.+..+.+.++...|.|++.....+ -...++++. ...
T Consensus 97 ~mr~at~~a~kgdta~AV~aFdeia~dt---~~P~~~rd~ARlraa~lLvD~gsy~dV~srve----pLa~d~n~m-R~s 168 (221)
T COG4649 97 RMRAATLLAQKGDTAAAVAAFDEIAADT---SIPQIGRDLARLRAAYLLVDNGSYDDVSSRVE----PLAGDGNPM-RHS 168 (221)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHhccC---CCcchhhHHHHHHHHHHHhccccHHHHHHHhh----hccCCCChh-HHH
Confidence 34556665444 8899999998764322 111111 1234556777777798887655432 122344432 234
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 024043 154 CKQKVAQYAAELEQYHKSIEIYEEIAR 180 (273)
Q Consensus 154 ~~~~~a~~~~~~g~y~~A~~~~~~~~~ 180 (273)
+...+|..-.+.|++.+|...|..+..
T Consensus 169 ArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 169 AREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 567788888999999999999999864
No 461
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=29.31 E-value=4.4e+02 Score=24.01 Aligned_cols=144 Identities=17% Similarity=0.190 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhh
Q 024043 111 AARYYKEIAELYESEHNIEQTIVFFEK-AADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLK 189 (273)
Q Consensus 111 ~a~~l~~lg~~~~~~g~~~~A~~~y~~-Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~ 189 (273)
.|+.-..++.+++..|+.++|...... .++-|..-....-..-.+-++-.+ ...++|-.|--+-.++-.+....+. .
T Consensus 130 RarlTk~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKO-G~~~D~vra~i~skKI~~K~F~~~~-~ 207 (439)
T KOG1498|consen 130 RARLTKMLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLC-LLRLDYVRAQIISKKINKKFFEKPD-V 207 (439)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHhhHHhcCCcc-H
Confidence 467778899999999999998876643 455554332222222333333222 3346888888877777655554432 1
Q ss_pred hchhhHHHH-HHHHHHhcCCHHHHHHHHHHHHHHHHHH-hhcCHhHHHHHHH---hhhccCCCchhHHHHHHHHH
Q 024043 190 YGVKGHLLN-AGICQLCKGDVVAITNALERYQDIAASM-DEEDIAKFTDVVK---EFDSMTPLDPWKTTLLLRVK 259 (273)
Q Consensus 190 ~~~~~~~~~-~gl~~l~~gd~~~A~~~~~~~~~ll~a~-~~~d~~~~~~~~~---~~~~~~~ld~~~~~~l~~~~ 259 (273)
...+--|+. +.-.+++.+.+ ......|.++.+.- ...|+++-...+. .|-.+.|-|+-+-.++.+|-
T Consensus 208 ~~lKlkyY~lmI~l~lh~~~Y---l~v~~~Yraiy~t~~vk~d~~kw~~vL~~iv~f~~LAp~dneQsdll~~is 279 (439)
T KOG1498|consen 208 QELKLKYYELMIRLGLHDRAY---LNVCRSYRAIYDTGNVKEDPEKWIEVLRSIVSFCVLAPHDNEQSDLLARIS 279 (439)
T ss_pred HHHHHHHHHHHHHhcccccch---hhHHHHHHHHhcccccccChhhhhhhhhhheeEEeecCCCcHHHHHHHHHh
Confidence 223322222 23334444444 34444455444422 2234444444443 35567777888888888876
No 462
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=28.90 E-value=1.6e+02 Score=18.81 Aligned_cols=58 Identities=12% Similarity=0.107 Sum_probs=33.1
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHH
Q 024043 158 VAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNAL 216 (273)
Q Consensus 158 ~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~ 216 (273)
-|.-+...|+|=+|-+.++..=....+... ..-..-+....+..++..|+...|.+.+
T Consensus 5 ~~~~l~n~g~f~EaHEvlE~~W~~~~~~~~-~~lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 5 EGIELFNAGDFFEAHEVLEELWKAAPGPER-DFLQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHCCCT-CCHH-HHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred HHHHHHcCCCHHHhHHHHHHHHHHCCcchH-HHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence 345567788999999999887221111110 1111122333466788899998887754
No 463
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=28.59 E-value=2.6e+02 Score=23.97 Aligned_cols=74 Identities=14% Similarity=0.153 Sum_probs=58.2
Q ss_pred CChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043 106 GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN 185 (273)
Q Consensus 106 g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~ 185 (273)
.+..-..+.+.++=..+...++.+.|..+-++.+.+...+-. -+..-|.+|.++|.+.-|++.++..+..++.+
T Consensus 175 ~~~~il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~------eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~ 248 (269)
T COG2912 175 SNREILSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPY------EIRDRGLIYAQLGCYHVALEDLSYFVEHCPDD 248 (269)
T ss_pred cHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChh------hccCcHHHHHhcCCchhhHHHHHHHHHhCCCc
Confidence 344455677788888888889999999999999998765432 24456899999999999999999977666665
No 464
>cd07645 I-BAR_IMD_BAIAP2L1 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. BAIAP2L1 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1) is also known as IRTKS (Insulin Receptor Tyrosine Kinase Substrate). It is widely expressed, serves as a substrate for the insulin receptor, and binds the small GTPase Rac. It plays a role in regulating the actin cytoskeleton and colocalizes with F-actin, cortactin, VASP, and vinculin. BAIAP2L1 expression leads to the formation of short actin bundles, distinct from filopodia-like protrusions induced by the expression of the related protein IRSp53. It contains an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The IMD domain of
Probab=28.23 E-value=3.5e+02 Score=22.43 Aligned_cols=61 Identities=16% Similarity=0.194 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc--CHHHHHHHHH
Q 024043 27 SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT--SSNEAISCLE 96 (273)
Q Consensus 27 ~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~--~~~eA~~~~~ 96 (273)
.+|++|......|+..|. +++.+.++.....+-..+.+.++.+++.++++. +.++-+..|.
T Consensus 30 k~Y~KA~~a~~~A~~~y~---------dal~Kige~A~~s~~SkeLG~~L~qi~ev~r~i~~~le~~lK~Fh 92 (226)
T cd07645 30 KNYEKAVNAMVLAGKAYY---------DGVAKIGEIAAVSPVSKELGHVLMEISDVHKKLNDSLEENFKKFH 92 (226)
T ss_pred hHHHHHHHHHHHHHHHHH---------HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555444444442 233444444444454567777888888888766 4444444443
No 465
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=27.94 E-value=3e+02 Score=21.70 Aligned_cols=53 Identities=11% Similarity=0.120 Sum_probs=37.0
Q ss_pred CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 024043 87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQ 143 (273)
Q Consensus 87 ~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~ 143 (273)
+++......+.+.+......+ +.++.+.+.++...|+.++|.+...++..+|.
T Consensus 123 ~~~~l~~~~~~a~~~l~~~P~----~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 123 DPEMLEAYIEWAERLLRRRPD----PNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CHHHHHHHHHHHHHHHHhCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 444444444444444433333 56788888999989999999999999999887
No 466
>cd09243 BRO1_Brox_like Protein-interacting Bro1-like domain of human Brox1 and related proteins. This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (
Probab=27.86 E-value=4.4e+02 Score=23.53 Aligned_cols=38 Identities=24% Similarity=0.083 Sum_probs=22.8
Q ss_pred CHHHHHHHHHHHHHHHH----Hc-------CCHHHHHHHHHHHHHHHHH
Q 024043 28 KYEDAADLFDKAANSFK----LA-------KSWDKAGATYVKLANCHLK 65 (273)
Q Consensus 28 ~~~~A~~~~~~a~~~~~----~~-------~~~~~A~~~~~~a~~~~~~ 65 (273)
.||.+.-+|+-++.... .. ....+|..+|++|+-++.-
T Consensus 105 ~fEk~sVLfNigal~s~~As~~~~~~~~s~e~~K~A~~~fq~AAG~F~~ 153 (353)
T cd09243 105 IFELASMLFNVALWYTKHASKLAGKEDITEDEAKDVHKSLRTAAGIFQF 153 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 56777777765443311 11 1256777788888888753
No 467
>KOG4703 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.62 E-value=32 Score=29.42 Aligned_cols=18 Identities=39% Similarity=0.660 Sum_probs=15.3
Q ss_pred CCCchhHHHHHHHHHHhc
Q 024043 245 TPLDPWKTTLLLRVKEKL 262 (273)
Q Consensus 245 ~~ld~~~~~~l~~~~~~~ 262 (273)
.+-|||+|++|+||..+|
T Consensus 392 g~kd~~cTTkllkiqqnI 409 (431)
T KOG4703|consen 392 GPKDPICTTKLLKIQQNI 409 (431)
T ss_pred CCCCchhhhhHHhhhhhh
Confidence 345899999999999876
No 468
>PF11159 DUF2939: Protein of unknown function (DUF2939); InterPro: IPR021330 This bacterial family of proteins has no known function.
Probab=27.33 E-value=57 Score=22.78 Aligned_cols=12 Identities=17% Similarity=0.365 Sum_probs=5.2
Q ss_pred HHhhcCHhHHHH
Q 024043 225 SMDEEDIAKFTD 236 (273)
Q Consensus 225 a~~~~d~~~~~~ 236 (273)
|++.+|.+.|.+
T Consensus 23 Ai~~~D~~~l~~ 34 (95)
T PF11159_consen 23 AIQAHDAAALAR 34 (95)
T ss_pred HHHHcCHHHHHH
Confidence 344444444444
No 469
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=26.62 E-value=75 Score=28.71 Aligned_cols=36 Identities=14% Similarity=0.162 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcC
Q 024043 131 TIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQ 167 (273)
Q Consensus 131 A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~ 167 (273)
|..+..+|++..+...+ ...+.+|.++|.+++.+|+
T Consensus 330 a~~l~~~Al~yL~kA~d-~ddPetWv~vAEa~I~LGN 365 (404)
T PF12753_consen 330 AQELIKKALEYLKKAQD-EDDPETWVDVAEAMIDLGN 365 (404)
T ss_dssp HHHHHHHHHHHHHHHHH-S--TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhc-cCChhHHHHHHHHHhhhhc
Confidence 55666666666554321 1223456666666666553
No 470
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=26.29 E-value=4.7e+02 Score=23.34 Aligned_cols=103 Identities=15% Similarity=0.093 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh------------ccCC-----------cccHHHHHHHHHHHHHHhcCH
Q 024043 112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQ------------NEEV-----------TTSANQCKQKVAQYAAELEQY 168 (273)
Q Consensus 112 a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~------------~~~~-----------~~~~~~~~~~~a~~~~~~g~y 168 (273)
..++..+++++..+|++..|.++.++|+=.++ .... .+....++.+....+.+.|-+
T Consensus 40 idtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~ 119 (360)
T PF04910_consen 40 IDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCW 119 (360)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcH
Q ss_pred HHHHHHHHHHHHHHhc-cchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043 169 HKSIEIYEEIARQSLN-NNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ 220 (273)
Q Consensus 169 ~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~ 220 (273)
.-|.+..+-...-.+. ++. ..++.+-..-+..+++.=-.+..+.+.
T Consensus 120 rTAlE~~KlLlsLdp~~DP~------g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 120 RTALEWCKLLLSLDPDEDPL------GVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred HHHHHHHHHHHhcCCCCCcc------hhHHHHHHHHHhcCCHHHHHHHHHhHh
No 471
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=26.12 E-value=4.3e+02 Score=22.79 Aligned_cols=63 Identities=11% Similarity=0.152 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 024043 112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIAR 180 (273)
Q Consensus 112 a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~ 180 (273)
..++..+++.+...|+++.+++..++-+++..-.. ..+..+-..|...|+...|+..|++.-.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E------~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDE------PAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccch------HHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 45888899999999999999999988777654332 4567777889999999999999998843
No 472
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.05 E-value=2.6e+02 Score=25.67 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=23.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 024043 38 KAANSFKLAKSWDKAGATYVKLANCHLK 65 (273)
Q Consensus 38 ~a~~~~~~~~~~~~A~~~~~~a~~~~~~ 65 (273)
..|.+|...++|++|+.+|++++.+..+
T Consensus 27 ~~gl~~dE~~~~e~a~~~Ye~gl~~i~~ 54 (560)
T KOG2709|consen 27 EQGLCYDEVNDWENALAMYEKGLNLIVE 54 (560)
T ss_pred HhhcchhhhcCHHHHHHHHHHHHHHHHh
Confidence 3477888899999999999999988764
No 473
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=25.84 E-value=3.9e+02 Score=22.27 Aligned_cols=38 Identities=18% Similarity=0.156 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHh---------cc-CHHHHHHHHHHHHHHHHhcCC
Q 024043 70 HEAAQAYVDAAHCYK---------KT-SSNEAISCLEQAVNMFCDIGR 107 (273)
Q Consensus 70 ~~aa~~~~~~~~~~~---------~~-~~~eA~~~~~~Al~~~~~~g~ 107 (273)
.-.|+.|--+|..+. .. ++..|+.++++|+.+..+.|=
T Consensus 166 ~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~GV 213 (230)
T PHA02537 166 EVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCGV 213 (230)
T ss_pred HHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCCh
Confidence 456777888888772 33 788999999999999988874
No 474
>KOG1107 consensus Membrane coat complex Retromer, subunit VPS35 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.82 E-value=3.9e+02 Score=26.19 Aligned_cols=21 Identities=14% Similarity=0.071 Sum_probs=15.5
Q ss_pred CHHHHHHHHHHHHHHHhccCC
Q 024043 127 NIEQTIVFFEKAADMFQNEEV 147 (273)
Q Consensus 127 ~~~~A~~~y~~Al~~~~~~~~ 147 (273)
+-+..++|+++|+.+..+--+
T Consensus 655 dGkRVleCLkkAlkIA~qcmd 675 (760)
T KOG1107|consen 655 DGKRVLECLKKALKIAQQCMD 675 (760)
T ss_pred chHHHHHHHHHHHHHHHHHHh
Confidence 457788899999888865433
No 475
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=25.40 E-value=2.8e+02 Score=26.92 Aligned_cols=52 Identities=15% Similarity=0.172 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH------------HHHHHHhhcCHhHHHHHHHhhhccCC
Q 024043 195 HLLNAGICQLCKGDVVAITNALERYQ------------DIAASMDEEDIAKFTDVVKEFDSMTP 246 (273)
Q Consensus 195 ~~~~~gl~~l~~gd~~~A~~~~~~~~------------~ll~a~~~~d~~~~~~~~~~~~~~~~ 246 (273)
.|...|++.+..+++..|+.-|.+.- +++..++-|.+..++....-|+++-+
T Consensus 589 aW~AWGlA~Lk~e~~aaAR~KFkqafklkgedipdvi~diin~ieGgpp~dVq~Vrem~dhlak 652 (1141)
T KOG1811|consen 589 AWHAWGLACLKAENLAAAREKFKQAFKLKGEDIPDVIFDIINLIEGGPPRDVQDVREMLDHLAK 652 (1141)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCccchHHHHHHHhhcCCCcchHHHHHHHHHHhcc
Confidence 45566999999999999999998854 55665555555566666666665544
No 476
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=25.36 E-value=5e+02 Score=23.34 Aligned_cols=61 Identities=20% Similarity=0.305 Sum_probs=39.6
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHH
Q 024043 77 VDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYES--EHNIEQTIVFFEKAADM 141 (273)
Q Consensus 77 ~~~~~~~~~~~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~--~g~~~~A~~~y~~Al~~ 141 (273)
..+-.+|...+|..|.+.+.....- -.++.. -..+..++..|.. .-++.+|.+++++.+..
T Consensus 136 ~~a~~l~n~~~y~aA~~~l~~l~~r--l~~~~~--~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 136 RRAKELFNRYDYGAAARILEELLRR--LPGREE--YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHh--CCchhh--HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3444445445888898888887653 122222 4567777776654 48899999999876653
No 477
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=25.34 E-value=6.3e+02 Score=24.45 Aligned_cols=21 Identities=19% Similarity=0.189 Sum_probs=10.4
Q ss_pred cCHhHHHHHHHhhhccCCCchhHH
Q 024043 229 EDIAKFTDVVKEFDSMTPLDPWKT 252 (273)
Q Consensus 229 ~d~~~~~~~~~~~~~~~~ld~~~~ 252 (273)
.|.+.++..+..| ..+++-.+
T Consensus 536 ~~~~~V~~~a~~f---~~l~~~V~ 556 (613)
T PF04097_consen 536 LDPSEVRRCAENF---RQLDDEVR 556 (613)
T ss_dssp S-HHHHHHHHHCG---CCS-HHHH
T ss_pred CCHHHHHHHHHHH---hcCCHHHH
Confidence 5556666666655 33555444
No 478
>PF03635 Vps35: Vacuolar protein sorting-associated protein 35 ; InterPro: IPR005378 The movement of lipid and protein components between intracellular organelles requires the regulated interactions of many molecules. Vacuolar protein sorting-associated protein (Vps)5 is a yeast protein that is a subunit of a large multimeric complex, termed the retromer complex, involved in retrograde transport of proteins from endosomes to the trans-Golgi network. Sorting nexin (SNX) 1 and SNX2 are its mammalian orthologs []. To carry out its biological functions, Vps5 forms the retromer complex with at least four other proteins: Vps17, Vps26, Vps29, and Vps35.Vps35 contains a central region of weaker sequence similarity, thought to indicate the presence of at least three domains [].; PDB: 2R17_C.
Probab=25.27 E-value=7e+02 Score=24.97 Aligned_cols=164 Identities=15% Similarity=0.197 Sum_probs=80.3
Q ss_pred HHHHHHHHhcCC-hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc-CCcccHHHHHHHHHHHHHHhcCHHHHHH
Q 024043 96 EQAVNMFCDIGR-LSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE-EVTTSANQCKQKVAQYAAELEQYHKSIE 173 (273)
Q Consensus 96 ~~Al~~~~~~g~-~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~-~~~~~~~~~~~~~a~~~~~~g~y~~A~~ 173 (273)
.+.+........ +..+=+.+...|.+-...|-.+-|.+++.+|..+|++. .+......++..+...+.+...+. -+
T Consensus 575 ~~~i~~L~~~~~~~~lalkL~Lq~A~~AD~~~~e~iaYEFf~QAf~iYEE~IsDSk~Q~~aL~~ii~tL~~~r~~~--~E 652 (762)
T PF03635_consen 575 HQCISALYQIHPSSELALKLYLQAAIVADQCGLEEIAYEFFSQAFTIYEEEISDSKAQFQALTLIIGTLQKTRSFS--EE 652 (762)
T ss_dssp HHHHHHHHHTT---HHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHH--SHHHHHHHHHHHHHHHCC-------HH
T ss_pred HHHHHHHHhccCchhhhHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhcCCC--hh
Confidence 344444433333 55566666677777776665566889999999999964 334445567777776665554333 33
Q ss_pred HHHHHHHHH--hccchh-hhchhhHHHHHHHHHHhc----------CCHHHHHHHHHHHHHHHHHHh--hcCHhHHHHHH
Q 024043 174 IYEEIARQS--LNNNLL-KYGVKGHLLNAGICQLCK----------GDVVAITNALERYQDIAASMD--EEDIAKFTDVV 238 (273)
Q Consensus 174 ~~~~~~~~~--~~~~~~-~~~~~~~~~~~gl~~l~~----------gd~~~A~~~~~~~~~ll~a~~--~~d~~~~~~~~ 238 (273)
.|+..+.+. .++.+. +...+.........++.. .|..+..+|+++...+-+++- ....+-|-+.+
T Consensus 653 nyd~L~tk~t~yasKLLKK~DQCRaV~~CSHLfW~~~~~~~~~~~~rd~krVlECLQKaLriAds~md~~~~~~LfveIL 732 (762)
T PF03635_consen 653 NYDTLITKCTLYASKLLKKPDQCRAVYLCSHLFWSTEISEETGSFYRDGKRVLECLQKALRIADSCMDPSQSVQLFVEIL 732 (762)
T ss_dssp HHHHHHHHHHHHHHC-SSHHHHHHHHHHCHHHHHT-B-TTTTT-B---HHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCCccccccccChHHHHHHHHHHHHHHHHHhCcchhHHHHHHHH
Confidence 454443221 111111 111111222222222221 366777888888877777663 23345566665
Q ss_pred Hhh----hcc-CCC-chhHHHHHHHHHHh
Q 024043 239 KEF----DSM-TPL-DPWKTTLLLRVKEK 261 (273)
Q Consensus 239 ~~~----~~~-~~l-d~~~~~~l~~~~~~ 261 (273)
+.| +.- ..+ ..+...++..|+++
T Consensus 733 n~ylyf~~~~~~~vt~~~in~LIelI~~~ 761 (762)
T PF03635_consen 733 NRYLYFFEKGNEEVTVKYINGLIELIKEN 761 (762)
T ss_dssp HHHHHHHTTT-TTS-HCHHHHHHHHHHCC
T ss_pred HHHHHhhhcCCCccCHHHHHHHHHHHhcC
Confidence 544 221 111 24444566666544
No 479
>TIGR00208 fliS flagellar biosynthetic protein FliS. The function of this protein in flagellar biosynthesis is unknown, but appears to be regulatory. The member of this family in Vibrio parahaemolyticus is designated FlaJ (creating a synonym for FliS) and was shown essential for flagellin biosynthesis.
Probab=25.23 E-value=2.8e+02 Score=20.44 Aligned_cols=38 Identities=13% Similarity=0.169 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Q 024043 29 YEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLE 67 (273)
Q Consensus 29 ~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 67 (273)
|+.++..... +...-..|+++++.....+|..+...+.
T Consensus 28 ydg~i~~l~~-a~~ai~~~d~~~~~~~i~ka~~Ii~eL~ 65 (124)
T TIGR00208 28 YNGCLKFIRL-AAQAIENDDIERKNENLIKAQNIIQELN 65 (124)
T ss_pred HHHHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 4445544433 3444456788888888888887776443
No 480
>cd09245 BRO1_UmRIM23-like Protein-interacting, Bro1-like domain of Ustilago maydis Rim23 (PalC), and related domains. This family contains the Bro1-like domain of Ustilago maydis Rim23 (also known as PalC), and related proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Through its Bro1-like domain, Rim23 allows the interaction between the endosomal and plasma membrane complexes. Bro1-like domains are boomerang-shape, and part of the domain is a tetratricop
Probab=25.20 E-value=3.4e+02 Score=24.86 Aligned_cols=16 Identities=19% Similarity=-0.026 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 024043 49 WDKAGATYVKLANCHL 64 (273)
Q Consensus 49 ~~~A~~~~~~a~~~~~ 64 (273)
+..|..+|.+|+-++.
T Consensus 159 lK~A~~~l~~AAGvf~ 174 (413)
T cd09245 159 LKAATKLLCKAAGIFD 174 (413)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6788888888888885
No 481
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=24.50 E-value=1.5e+02 Score=28.20 Aligned_cols=51 Identities=12% Similarity=-0.016 Sum_probs=32.8
Q ss_pred CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 024043 87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQ 143 (273)
Q Consensus 87 ~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~ 143 (273)
+.-.|+.-...|+.+-... -+++..|+.++.+++++.+|+++..-+.-.+.
T Consensus 426 d~~~AlrDch~Alrln~s~------~kah~~la~aL~el~r~~eal~~~~alq~~~P 476 (758)
T KOG1310|consen 426 DSYLALRDCHVALRLNPSI------QKAHFRLARALNELTRYLEALSCHWALQMSFP 476 (758)
T ss_pred cHHHHHHhHHhhccCChHH------HHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCc
Confidence 5555666666665543322 23677788888888888888887765555544
No 482
>PRK05685 fliS flagellar protein FliS; Validated
Probab=24.14 E-value=3.1e+02 Score=20.47 Aligned_cols=38 Identities=21% Similarity=0.154 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Q 024043 29 YEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLE 67 (273)
Q Consensus 29 ~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 67 (273)
|+.+......| ......++++++.....+|..+...+.
T Consensus 32 ydgai~~l~~A-~~ai~~~~~~~~~~~l~ka~~Ii~eL~ 69 (132)
T PRK05685 32 YEGALSFLAQA-KLAIEQGDIEAKGEYLSKAINIINGLR 69 (132)
T ss_pred HHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 44555544443 334455778877777777777776443
No 483
>PF09577 Spore_YpjB: Sporulation protein YpjB (SpoYpjB); InterPro: IPR014231 Proteins in thie entry, typified by YpjB, are restricted to a subset of the endospore-forming bacteria which includes Bacillus species, but not species. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon []. Sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect, but this gene is not, however, a part of the endospore formation minimal gene set.
Probab=24.09 E-value=2.5e+02 Score=23.44 Aligned_cols=12 Identities=17% Similarity=0.288 Sum_probs=5.8
Q ss_pred cCCHHHHHHHHH
Q 024043 125 EHNIEQTIVFFE 136 (273)
Q Consensus 125 ~g~~~~A~~~y~ 136 (273)
.|+|++|.+...
T Consensus 18 ~~~yeeA~q~l~ 29 (232)
T PF09577_consen 18 QGKYEEAKQLLE 29 (232)
T ss_pred cccHHHHHHHHH
Confidence 355555554443
No 484
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=23.99 E-value=3.6e+02 Score=21.13 Aligned_cols=85 Identities=7% Similarity=0.059 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhc
Q 024043 112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYG 191 (273)
Q Consensus 112 a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~ 191 (273)
-..+..+..+-...++.+.+...+ .|+.+.+ +.....-.--|.+++..|++.+|+.+++.+.....+.+
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL-~ALrvLR-----P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p----- 78 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALL-DALRVLR-----PEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFP----- 78 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHH-HHHHHhC-----CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCh-----
Confidence 345555556656667777766555 4555543 22345556678899999999999999999854443332
Q ss_pred hhhHHHHHHHHHHhcCCH
Q 024043 192 VKGHLLNAGICQLCKGDV 209 (273)
Q Consensus 192 ~~~~~~~~gl~~l~~gd~ 209 (273)
.... -+..|....||.
T Consensus 79 ~~kA--LlA~CL~~~~D~ 94 (160)
T PF09613_consen 79 YAKA--LLALCLYALGDP 94 (160)
T ss_pred HHHH--HHHHHHHHcCCh
Confidence 1111 235566777875
No 485
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=23.74 E-value=3.5e+02 Score=20.98 Aligned_cols=83 Identities=11% Similarity=0.075 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchh
Q 024043 114 YYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVK 193 (273)
Q Consensus 114 ~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~ 193 (273)
.+..+...-...++++.+-.... |+.+.+-. ....-.--|.+++..|+|.+|+.+++++.......+ ..
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLd-ALrvLrP~-----~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p-----~~ 80 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLD-ALRVLRPN-----LKELDMFDGWLLIARGNYDEAARILRELLSSAGAPP-----YG 80 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHH-HHHHhCCC-----ccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCch-----HH
Confidence 33333333334577777655553 44444322 123344457889999999999999999854322211 11
Q ss_pred hHHHHHHHHHHhcCCH
Q 024043 194 GHLLNAGICQLCKGDV 209 (273)
Q Consensus 194 ~~~~~~gl~~l~~gd~ 209 (273)
. --+..|....||.
T Consensus 81 k--AL~A~CL~al~Dp 94 (153)
T TIGR02561 81 K--ALLALCLNAKGDA 94 (153)
T ss_pred H--HHHHHHHHhcCCh
Confidence 1 1224566677885
No 486
>cd09243 BRO1_Brox_like Protein-interacting Bro1-like domain of human Brox1 and related proteins. This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (
Probab=23.54 E-value=3.9e+02 Score=23.84 Aligned_cols=32 Identities=9% Similarity=0.178 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 024043 114 YYKEIAELYESEHNIEQTIVFFEKAADMFQNE 145 (273)
Q Consensus 114 ~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~ 145 (273)
++...|..+...+++-+|+.+++.|.+.+...
T Consensus 250 A~y~~a~~l~e~~k~GeaIa~L~~A~~~~k~a 281 (353)
T cd09243 250 AYCYHGETLLAKDKCGEAIRSLQESEKLYNKA 281 (353)
T ss_pred HHHHHHHHhHhcchHHHHHHHHHHHHHHHHHH
Confidence 44444555555566777777777777666554
No 487
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=22.37 E-value=4.6e+02 Score=23.63 Aligned_cols=38 Identities=13% Similarity=0.029 Sum_probs=32.2
Q ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 024043 28 KYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLK 65 (273)
Q Consensus 28 ~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~ 65 (273)
+.+.++.-...+|+-+...+++++|.+.|..|..+..+
T Consensus 36 ~~~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~e 73 (400)
T KOG4563|consen 36 QKEKTLEELVQAGRRALCNNDIDKAVDALSEATELSDE 73 (400)
T ss_pred hHHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHH
Confidence 56677778888899999999999999999999988763
No 488
>KOG1953 consensus Targeting complex (TRAPP) subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.15 E-value=61 Score=32.83 Aligned_cols=51 Identities=10% Similarity=0.076 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHH
Q 024043 111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQY 161 (273)
Q Consensus 111 ~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~ 161 (273)
.+++...+|..+...|++..|++.|..|++.....|+..+.+.++.....|
T Consensus 244 LGR~~Kq~gdy~LLAGrpvdAl~~fs~AIe~lk~t~DyLWlg~AldG~tVC 294 (1235)
T KOG1953|consen 244 LGRIEKQFGDYYLLAGRPVDALKHFSTAIELLKATGDYLWLGLALDGFTVC 294 (1235)
T ss_pred HHHHHHhhcceeeecCCchHHHHHHHHHHHHHHhhhhheeehhhccchhHH
Confidence 456777888888888999999999999999999999887777666554443
No 489
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=21.91 E-value=3.9e+02 Score=20.88 Aligned_cols=87 Identities=8% Similarity=0.004 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCc
Q 024043 70 HEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVT 148 (273)
Q Consensus 70 ~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~ 148 (273)
......+.++..+-... +++++...+...--+.++. +..-.--|.++...|++.+|+..++...+- .
T Consensus 7 ~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~------~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~------~ 74 (160)
T PF09613_consen 7 DEIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEF------PELDLFDGWLHIVRGDWDDALRLLRELEER------A 74 (160)
T ss_pred HHHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHHhCCHHHHHHHHHHHhcc------C
Confidence 34444555555555444 6666655555433333222 235555688888889999999999874221 1
Q ss_pred ccHHHHHHHHHHHHHHhcCH
Q 024043 149 TSANQCKQKVAQYAAELEQY 168 (273)
Q Consensus 149 ~~~~~~~~~~a~~~~~~g~y 168 (273)
.....+---++.|+..+|++
T Consensus 75 ~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 75 PGFPYAKALLALCLYALGDP 94 (160)
T ss_pred CCChHHHHHHHHHHHHcCCh
Confidence 22233444556667666654
No 490
>PF11372 DUF3173: Domain of unknown function (DUF3173); InterPro: IPR021512 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=21.79 E-value=1.2e+02 Score=19.42 Aligned_cols=22 Identities=18% Similarity=0.413 Sum_probs=18.1
Q ss_pred HhhHHHHHHHHHHhhc--cccCCC
Q 024043 5 IARAEEFEKKAEKKLN--GWGLFG 26 (273)
Q Consensus 5 ~~~a~~l~~~Aek~~k--~~~~~~ 26 (273)
...|.+++++|...+- |++||.
T Consensus 16 ~~tA~~IIrqAK~~lV~~G~~~Y~ 39 (59)
T PF11372_consen 16 ESTARDIIRQAKALLVQKGFSFYN 39 (59)
T ss_pred HHHHHHHHHHHHHHHHHcCCCccc
Confidence 5689999999999985 777775
No 491
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=21.77 E-value=1.4e+02 Score=23.09 Aligned_cols=30 Identities=17% Similarity=0.331 Sum_probs=24.3
Q ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHHHHhcc
Q 024043 116 KEIAELYESEH-NIEQTIVFFEKAADMFQNE 145 (273)
Q Consensus 116 ~~lg~~~~~~g-~~~~A~~~y~~Al~~~~~~ 145 (273)
..+|+.+...| +.++++.++-+|+.++.+.
T Consensus 94 V~~GE~L~~~g~~~~ega~hf~nAl~Vc~qP 124 (148)
T TIGR00985 94 VQLGEELMAQGTNVDEGAVHFYNALKVYPQP 124 (148)
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHhCCCH
Confidence 46788888887 8999999999999888643
No 492
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=21.62 E-value=6.4e+02 Score=23.20 Aligned_cols=124 Identities=9% Similarity=-0.039 Sum_probs=75.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 024043 41 NSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAE 120 (273)
Q Consensus 41 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~ 120 (273)
-+-.-.|+-..|...-.++..+...- .+.-.++..+-....+++++.|.+-|+--+ +++..---.+..+=.
T Consensus 92 liAagAGda~lARkmt~~~~~llssD---qepLIhlLeAQaal~eG~~~~Ar~kfeAMl------~dPEtRllGLRgLyl 162 (531)
T COG3898 92 LIAAGAGDASLARKMTARASKLLSSD---QEPLIHLLEAQAALLEGDYEDARKKFEAML------DDPETRLLGLRGLYL 162 (531)
T ss_pred hhhhccCchHHHHHHHHHHHhhhhcc---chHHHHHHHHHHHHhcCchHHHHHHHHHHh------cChHHHHHhHHHHHH
Confidence 34444667777777666666554221 222223333333444558888888887543 454444333443333
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 024043 121 LYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIA 179 (273)
Q Consensus 121 ~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~ 179 (273)
--..+|+.+.|.+|-++|.+...... ++.. ..-.-.+..|+++.|+++.+...
T Consensus 163 eAqr~GareaAr~yAe~Aa~~Ap~l~---WA~~---AtLe~r~~~gdWd~AlkLvd~~~ 215 (531)
T COG3898 163 EAQRLGAREAARHYAERAAEKAPQLP---WAAR---ATLEARCAAGDWDGALKLVDAQR 215 (531)
T ss_pred HHHhcccHHHHHHHHHHHHhhccCCc---hHHH---HHHHHHHhcCChHHHHHHHHHHH
Confidence 33445999999999999998887654 2222 22234567899999999987764
No 493
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.36 E-value=6.1e+02 Score=22.83 Aligned_cols=96 Identities=6% Similarity=-0.078 Sum_probs=63.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchh
Q 024043 114 YYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVK 193 (273)
Q Consensus 114 ~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~ 193 (273)
+....+..+++.|-|++|-+...+|+++.+-+- =+-...+-|+.-.|++.++.+...+.-..-..+ -...+.
T Consensus 177 v~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~------Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s-~mlasH- 248 (491)
T KOG2610|consen 177 VHGMYAFGLEECGIYDDAEKQADRALQINRFDC------WASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQS-WMLASH- 248 (491)
T ss_pred HHHHHHhhHHHhccchhHHHHHHhhccCCCcch------HHHHHHHHHHHhcchhhhHHHHHHhcccchhhh-hHHHhh-
Confidence 334567778888999999999999999976432 123456667777899999999877653111111 011111
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHH
Q 024043 194 GHLLNAGICQLCKGDVVAITNALER 218 (273)
Q Consensus 194 ~~~~~~gl~~l~~gd~~~A~~~~~~ 218 (273)
++ -...++|+.-+.++.|.+.|++
T Consensus 249 Ny-WH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 249 NY-WHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred hh-HHHHHhhhcccchhHHHHHHHH
Confidence 12 2345778888889888887776
No 494
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=20.91 E-value=4.6e+02 Score=25.10 Aligned_cols=60 Identities=12% Similarity=0.067 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhc---CCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 024043 114 YYKEIAELYESE---HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIA 179 (273)
Q Consensus 114 ~l~~lg~~~~~~---g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~ 179 (273)
+|.+-+.++.+. |+.-.|+.-...|+.+- .....++..++.++.++++|.+|+++...+.
T Consensus 410 ~l~nraa~lmkRkW~~d~~~AlrDch~Alrln------~s~~kah~~la~aL~el~r~~eal~~~~alq 472 (758)
T KOG1310|consen 410 LLENRAAALMKRKWRGDSYLALRDCHVALRLN------PSIQKAHFRLARALNELTRYLEALSCHWALQ 472 (758)
T ss_pred HHHhHHHHHHhhhccccHHHHHHhHHhhccCC------hHHHHHHHHHHHHHHHHhhHHHhhhhHHHHh
Confidence 344444444443 77777887777777664 3445778999999999999999999877664
No 495
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=20.83 E-value=1.1e+02 Score=15.45 Aligned_cols=17 Identities=29% Similarity=0.579 Sum_probs=9.5
Q ss_pred CHHHHHHHHHHHHHHHh
Q 024043 127 NIEQTIVFFEKAADMFQ 143 (273)
Q Consensus 127 ~~~~A~~~y~~Al~~~~ 143 (273)
+++.+...|++++..+.
T Consensus 2 ~~~~~r~i~e~~l~~~~ 18 (33)
T smart00386 2 DIERARKIYERALEKFP 18 (33)
T ss_pred cHHHHHHHHHHHHHHCC
Confidence 45555566666665543
No 496
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=20.71 E-value=4.7e+02 Score=21.31 Aligned_cols=78 Identities=10% Similarity=0.026 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHh---
Q 024043 94 CLEQAVNMFCDIGRLSMAARYYKEIAELYES-----EHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAEL--- 165 (273)
Q Consensus 94 ~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~-----~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~--- 165 (273)
-|+.|..+|..+=+-.+-++.-.+.|..+.. .+++..|+++|..|.+. .....-..+|.++..-
T Consensus 50 nF~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~--------n~~~aC~~~gLl~~~g~~~ 121 (248)
T KOG4014|consen 50 NFQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA--------NIPQACRYLGLLHWNGEKD 121 (248)
T ss_pred HHHHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc--------CCHHHHhhhhhhhccCcCC
Confidence 4777777887776666666777777776654 25799999999999873 2234455667666532
Q ss_pred --c--CHHHHHHHHHHHH
Q 024043 166 --E--QYHKSIEIYEEIA 179 (273)
Q Consensus 166 --g--~y~~A~~~~~~~~ 179 (273)
+ +.++|.+++.++-
T Consensus 122 r~~dpd~~Ka~~y~traC 139 (248)
T KOG4014|consen 122 RKADPDSEKAERYMTRAC 139 (248)
T ss_pred ccCCCCcHHHHHHHHHhc
Confidence 2 3689999999873
No 497
>COG3160 Rsd Regulator of sigma D [Transcription]
Probab=20.68 E-value=3.9e+02 Score=20.41 Aligned_cols=90 Identities=13% Similarity=0.122 Sum_probs=56.1
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc--CHHHHHHHHHHHHHHHHh
Q 024043 27 SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT--SSNEAISCLEQAVNMFCD 104 (273)
Q Consensus 27 ~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~--~~~eA~~~~~~Al~~~~~ 104 (273)
|--.+|.+.|.+...-|-..|.|. .|++...-.+..|++ .+..++.+|-.. ..+.++.+.....+.-.+
T Consensus 48 plnakaL~~FCq~LvDYlSaGHF~----iYe~i~~k~~~~g~~-----~l~la~kI~p~l~a~Tq~imnfnD~~~n~~~d 118 (162)
T COG3160 48 PLNAKALDDFCQSLVDYLSAGHFS----IYERILHKLEGNGDR-----QLALAAKIWPQLEANTQQIMNFNDSSLNTAID 118 (162)
T ss_pred CCCHHHHHHHHHHHHHHHhccchH----HHHHHHHHHhccCcH-----HHHHHHHHHHHHHhhHHHHHhhcchhhccccC
Confidence 445778888888777777788776 677776666666653 344555666544 555566666655555555
Q ss_pred cCChhHHHHHHHHHHHHHHhc
Q 024043 105 IGRLSMAARYYKEIAELYESE 125 (273)
Q Consensus 105 ~g~~~~~a~~l~~lg~~~~~~ 125 (273)
.+.-...-+.+..+|+.+..+
T Consensus 119 ~d~cle~qqaLs~ige~Le~R 139 (162)
T COG3160 119 HDNCLEFQQALSDIGEALEAR 139 (162)
T ss_pred chHHHHHHHHHHHHHHHHHHH
Confidence 554444445666666666554
No 498
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=20.65 E-value=5.8e+02 Score=22.30 Aligned_cols=33 Identities=15% Similarity=0.241 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC
Q 024043 114 YYKEIAELYESEHNIEQTIVFFEKAADMFQNEE 146 (273)
Q Consensus 114 ~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~ 146 (273)
++..+|..+...+++-+|+.+++.|...++...
T Consensus 253 a~~~~a~~~~e~~~~G~aia~L~~A~~~~~~~~ 285 (345)
T cd09034 253 AYYYHGLKLDEANKIGEAIARLQAALELLKESE 285 (345)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHHHHHH
Confidence 444445555555677777777777777777664
No 499
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=20.53 E-value=2.2e+02 Score=25.81 Aligned_cols=33 Identities=12% Similarity=0.307 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 024043 110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQN 144 (273)
Q Consensus 110 ~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~ 144 (273)
..|.++..+|.+|.. +-.+--.+|.+|-++...
T Consensus 355 ~vAEa~I~LGNL~d~--eS~eQe~~Y~eAE~iL~k 387 (404)
T PF12753_consen 355 DVAEAMIDLGNLYDN--ESKEQEKAYKEAEKILKK 387 (404)
T ss_dssp HHHHHHHHHHHH-SS--HHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhccccc--chHHHHHHHHHHHHHHHH
Confidence 344455555555432 223345667666666654
No 500
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=20.46 E-value=4.5e+02 Score=23.24 Aligned_cols=56 Identities=25% Similarity=0.317 Sum_probs=0.0
Q ss_pred CCch--HhhHHHHHHHHHHhhc-cccCCCCCHHHHHHHHHHHHHHHHHcCCHH------------HHHHHHHHHHHH
Q 024043 1 MGDQ--IARAEEFEKKAEKKLN-GWGLFGSKYEDAADLFDKAANSFKLAKSWD------------KAGATYVKLANC 62 (273)
Q Consensus 1 ~~~~--~~~a~~l~~~Aek~~k-~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~------------~A~~~~~~a~~~ 62 (273)
||.. .++|-+|.++|-..=+ + +|++|..+|..+...|...=.|+ +-.+++.+|-++
T Consensus 1 ms~~~~l~kaI~lv~kA~~eD~a~------nY~eA~~lY~~aleYF~~~lKYE~~~~kaKd~IraK~~EYLdRAEkL 71 (439)
T KOG0739|consen 1 MSNGSFLQKAIDLVKKAIDEDNAK------NYEEALRLYQNALEYFLHALKYEANNKKAKDSIRAKFTEYLDRAEKL 71 (439)
T ss_pred CCcchHHHHHHHHHHHHhhhcchh------chHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHH
Done!