Query 024043
Match_columns 273
No_of_seqs 233 out of 1533
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 17:12:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024043.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024043hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qqe_A Vesicular transport pro 100.0 5.2E-41 1.8E-45 288.5 29.5 266 5-273 1-292 (292)
2 2ifu_A Gamma-SNAP; membrane fu 100.0 9.9E-36 3.4E-40 257.3 30.2 256 1-259 2-275 (307)
3 3ulq_A Response regulator aspa 99.9 3.3E-19 1.1E-23 157.5 29.5 206 5-218 119-331 (383)
4 3q15_A PSP28, response regulat 99.9 1.1E-18 3.9E-23 154.0 29.3 205 6-217 118-327 (378)
5 2ifu_A Gamma-SNAP; membrane fu 99.9 3.3E-19 1.1E-23 153.5 24.3 189 27-220 70-258 (307)
6 3ulq_A Response regulator aspa 99.8 1.6E-18 5.3E-23 153.2 28.8 220 39-260 109-347 (383)
7 1qqe_A Vesicular transport pro 99.8 7.4E-19 2.5E-23 150.3 24.6 214 4-220 32-264 (292)
8 3q15_A PSP28, response regulat 99.8 2.8E-18 9.6E-23 151.5 28.7 217 39-260 107-344 (378)
9 3sf4_A G-protein-signaling mod 99.8 1.1E-17 3.7E-22 147.2 28.5 215 5-220 25-294 (406)
10 3edt_B KLC 2, kinesin light ch 99.8 1.5E-17 5.1E-22 138.9 25.8 213 5-219 17-278 (283)
11 3sf4_A G-protein-signaling mod 99.8 2.2E-17 7.4E-22 145.3 27.6 220 5-225 63-339 (406)
12 4a1s_A PINS, partner of inscut 99.8 1.7E-17 5.9E-22 147.0 27.0 221 5-226 102-376 (411)
13 4a1s_A PINS, partner of inscut 99.8 2.7E-17 9.4E-22 145.6 28.2 217 4-221 63-331 (411)
14 3ro2_A PINS homolog, G-protein 99.8 3.9E-17 1.3E-21 139.2 27.8 218 5-223 21-293 (338)
15 3ro2_A PINS homolog, G-protein 99.8 2.5E-17 8.5E-22 140.4 26.1 218 5-223 59-333 (338)
16 4b4t_Q 26S proteasome regulato 99.8 4.5E-17 1.5E-21 145.4 27.6 183 36-218 58-241 (434)
17 3nf1_A KLC 1, kinesin light ch 99.8 1.2E-16 4.1E-21 135.5 27.1 215 5-221 43-306 (311)
18 3ro3_A PINS homolog, G-protein 99.8 7.5E-17 2.6E-21 123.2 22.9 155 27-181 3-158 (164)
19 3gw4_A Uncharacterized protein 99.8 1.3E-16 4.3E-21 127.5 22.4 151 31-181 24-176 (203)
20 3nf1_A KLC 1, kinesin light ch 99.8 1.8E-16 6.3E-21 134.3 23.8 197 26-222 20-224 (311)
21 3gw4_A Uncharacterized protein 99.8 8.2E-16 2.8E-20 122.8 24.4 192 46-246 5-198 (203)
22 2qfc_A PLCR protein; TPR, HTH, 99.8 1.7E-16 5.9E-21 135.3 21.1 193 35-228 77-272 (293)
23 3u3w_A Transcriptional activat 99.7 2.3E-16 7.8E-21 134.6 21.1 194 33-227 75-271 (293)
24 3uq3_A Heat shock protein STI1 99.7 5.3E-15 1.8E-19 121.9 28.0 200 6-223 3-237 (258)
25 3uq3_A Heat shock protein STI1 99.7 1.5E-15 5.1E-20 125.2 23.5 216 32-261 4-256 (258)
26 3u3w_A Transcriptional activat 99.7 4E-16 1.4E-20 133.0 20.0 148 33-180 115-265 (293)
27 3ro3_A PINS homolog, G-protein 99.7 1.1E-15 3.8E-20 116.6 20.5 157 66-223 2-159 (164)
28 3edt_B KLC 2, kinesin light ch 99.7 2.4E-15 8.4E-20 125.3 23.4 218 45-262 13-262 (283)
29 2qfc_A PLCR protein; TPR, HTH, 99.7 1.4E-15 4.7E-20 129.7 19.7 142 39-180 121-265 (293)
30 1hz4_A MALT regulatory protein 99.7 4.4E-14 1.5E-18 123.8 28.8 184 34-218 54-240 (373)
31 2pl2_A Hypothetical conserved 99.7 1.3E-15 4.4E-20 124.4 16.4 166 27-218 19-210 (217)
32 3vtx_A MAMA; tetratricopeptide 99.7 3.4E-15 1.2E-19 117.9 17.9 164 32-220 4-168 (184)
33 4gyw_A UDP-N-acetylglucosamine 99.7 1.5E-15 5.2E-20 144.9 17.7 166 33-223 9-175 (723)
34 4eqf_A PEX5-related protein; a 99.7 2.7E-15 9.4E-20 130.9 16.8 177 27-220 79-274 (365)
35 1hz4_A MALT regulatory protein 99.6 9.3E-14 3.2E-18 121.7 24.7 186 32-220 13-201 (373)
36 4eqf_A PEX5-related protein; a 99.6 1.1E-14 3.8E-19 127.0 18.2 201 5-222 81-310 (365)
37 2pl2_A Hypothetical conserved 99.6 7.9E-15 2.7E-19 119.7 16.0 160 35-220 7-178 (217)
38 3hym_B Cell division cycle pro 99.6 5.7E-14 1.9E-18 119.8 21.4 240 5-262 38-314 (330)
39 1w3b_A UDP-N-acetylglucosamine 99.6 2.6E-14 8.7E-19 125.8 19.2 237 5-262 83-383 (388)
40 3u4t_A TPR repeat-containing p 99.6 8.9E-15 3.1E-19 122.0 14.4 211 27-259 17-262 (272)
41 1w3b_A UDP-N-acetylglucosamine 99.6 4.3E-14 1.5E-18 124.4 18.8 238 5-261 49-348 (388)
42 4i17_A Hypothetical protein; T 99.6 3.6E-15 1.2E-19 121.9 11.0 207 34-260 8-225 (228)
43 2ho1_A Type 4 fimbrial biogene 99.6 3.4E-13 1.2E-17 111.2 21.9 171 27-220 31-202 (252)
44 2vq2_A PILW, putative fimbrial 99.6 7.5E-13 2.6E-17 106.6 23.4 166 32-220 7-174 (225)
45 1fch_A Peroxisomal targeting s 99.6 4.5E-14 1.5E-18 122.8 16.9 164 38-220 69-278 (368)
46 2h6f_A Protein farnesyltransfe 99.6 2.6E-14 8.9E-19 126.9 15.0 213 27-264 111-365 (382)
47 3hym_B Cell division cycle pro 99.6 1.1E-13 3.6E-18 118.2 17.8 196 5-219 72-296 (330)
48 1fch_A Peroxisomal targeting s 99.6 2.3E-13 8E-18 118.2 19.5 177 27-222 78-314 (368)
49 3qky_A Outer membrane assembly 99.6 3.1E-13 1.1E-17 112.8 18.7 171 5-186 12-229 (261)
50 3qky_A Outer membrane assembly 99.6 5.6E-13 1.9E-17 111.2 20.1 171 36-219 18-221 (261)
51 1ouv_A Conserved hypothetical 99.6 7.6E-13 2.6E-17 110.9 21.0 161 27-220 20-213 (273)
52 3ieg_A DNAJ homolog subfamily 99.6 3.2E-13 1.1E-17 116.2 19.1 236 5-255 53-343 (359)
53 3ieg_A DNAJ homolog subfamily 99.6 1.7E-12 5.7E-17 111.7 23.3 244 5-260 19-314 (359)
54 2q7f_A YRRB protein; TPR, prot 99.5 1.3E-13 4.3E-18 112.8 15.3 158 38-220 62-220 (243)
55 3fp2_A TPR repeat-containing p 99.5 8.2E-13 2.8E-17 120.5 22.3 197 5-220 259-489 (537)
56 2ho1_A Type 4 fimbrial biogene 99.5 1.1E-12 3.8E-17 108.1 21.1 171 27-220 51-236 (252)
57 3fp2_A TPR repeat-containing p 99.5 8.4E-13 2.9E-17 120.4 21.3 230 6-261 212-471 (537)
58 2xpi_A Anaphase-promoting comp 99.5 8.9E-13 3E-17 122.1 21.3 238 5-262 321-594 (597)
59 4abn_A Tetratricopeptide repea 99.5 2.9E-13 1E-17 123.3 17.3 188 35-245 104-319 (474)
60 3cv0_A Peroxisome targeting si 99.5 2.5E-12 8.4E-17 109.4 21.3 162 40-220 62-267 (327)
61 2vq2_A PILW, putative fimbrial 99.5 8.9E-12 3.1E-16 100.2 23.5 170 27-219 22-208 (225)
62 3as5_A MAMA; tetratricopeptide 99.5 3.8E-13 1.3E-17 104.8 14.8 167 30-221 5-172 (186)
63 2yhc_A BAMD, UPF0169 lipoprote 99.5 1.9E-12 6.4E-17 106.0 19.5 172 38-219 9-210 (225)
64 2h6f_A Protein farnesyltransfe 99.5 2.5E-13 8.7E-18 120.5 15.1 155 33-212 97-254 (382)
65 2y4t_A DNAJ homolog subfamily 99.5 4.6E-12 1.6E-16 113.1 23.4 178 27-219 74-283 (450)
66 4b4t_Q 26S proteasome regulato 99.5 1.9E-12 6.3E-17 115.3 20.5 174 46-220 17-202 (434)
67 1ouv_A Conserved hypothetical 99.5 3.7E-12 1.3E-16 106.7 20.5 182 35-249 8-217 (273)
68 2y4t_A DNAJ homolog subfamily 99.5 1.8E-12 6.1E-17 115.8 19.2 233 5-254 76-365 (450)
69 3u4t_A TPR repeat-containing p 99.5 2.5E-12 8.6E-17 107.0 18.1 198 4-220 18-248 (272)
70 2xpi_A Anaphase-promoting comp 99.5 2.6E-12 8.9E-17 118.9 19.6 197 5-220 355-577 (597)
71 2q7f_A YRRB protein; TPR, prot 99.5 8.1E-13 2.8E-17 107.9 14.4 166 30-220 20-186 (243)
72 4ga2_A E3 SUMO-protein ligase 99.5 1.1E-13 3.7E-18 106.5 8.4 130 39-186 3-134 (150)
73 4gcn_A Protein STI-1; structur 99.5 7.1E-13 2.4E-17 99.0 12.2 106 70-181 5-112 (127)
74 3vtx_A MAMA; tetratricopeptide 99.5 1.8E-12 6E-17 102.1 14.8 162 72-252 4-175 (184)
75 4i17_A Hypothetical protein; T 99.5 2.2E-12 7.4E-17 105.2 15.8 164 7-185 6-213 (228)
76 4g1t_A Interferon-induced prot 99.4 1.1E-12 3.7E-17 118.1 14.4 174 33-219 51-239 (472)
77 4gyw_A UDP-N-acetylglucosamine 99.4 3.8E-12 1.3E-16 121.5 18.7 133 69-220 5-138 (723)
78 2gw1_A Mitochondrial precursor 99.4 1.2E-11 4.1E-16 111.9 21.3 133 74-220 187-331 (514)
79 4abn_A Tetratricopeptide repea 99.4 5.6E-13 1.9E-17 121.4 12.0 168 27-217 116-316 (474)
80 4gcn_A Protein STI-1; structur 99.4 5.2E-12 1.8E-16 94.2 14.6 109 29-143 4-114 (127)
81 4g1t_A Interferon-induced prot 99.4 3.5E-13 1.2E-17 121.3 9.4 155 58-219 36-201 (472)
82 3cv0_A Peroxisome targeting si 99.4 1.3E-11 4.3E-16 105.0 18.6 168 34-220 22-233 (327)
83 3n71_A Histone lysine methyltr 99.4 1.3E-11 4.3E-16 112.8 19.2 146 40-185 316-468 (490)
84 2gw1_A Mitochondrial precursor 99.4 3.4E-12 1.2E-16 115.5 15.3 174 27-219 251-441 (514)
85 3urz_A Uncharacterized protein 99.4 4.4E-12 1.5E-16 102.6 14.1 162 38-219 9-183 (208)
86 3as5_A MAMA; tetratricopeptide 99.4 1.1E-11 3.9E-16 96.2 15.2 134 34-185 43-177 (186)
87 1xnf_A Lipoprotein NLPI; TPR, 99.4 6.4E-11 2.2E-15 98.3 20.6 181 5-218 21-202 (275)
88 2hr2_A Hypothetical protein; a 99.4 1.5E-11 5.1E-16 95.0 14.6 115 72-186 10-136 (159)
89 1hh8_A P67PHOX, NCF-2, neutrop 99.4 1.5E-11 5E-16 98.8 15.0 138 30-183 4-152 (213)
90 1xnf_A Lipoprotein NLPI; TPR, 99.4 4.2E-11 1.5E-15 99.4 18.1 153 46-220 18-171 (275)
91 2yhc_A BAMD, UPF0169 lipoprote 99.4 3.2E-11 1.1E-15 98.6 16.9 140 38-183 46-215 (225)
92 4gco_A Protein STI-1; structur 99.4 8.7E-12 3E-16 92.9 11.8 104 70-185 10-114 (126)
93 3urz_A Uncharacterized protein 99.3 4.8E-11 1.6E-15 96.4 16.1 167 74-259 5-200 (208)
94 3mkr_A Coatomer subunit epsilo 99.3 1E-10 3.4E-15 99.7 18.9 127 75-219 132-261 (291)
95 3rjv_A Putative SEL1 repeat pr 99.3 1.9E-10 6.6E-15 93.2 19.2 156 36-219 21-194 (212)
96 2hr2_A Hypothetical protein; a 99.3 2.1E-10 7.2E-15 88.5 17.2 113 35-147 13-137 (159)
97 1xi4_A Clathrin heavy chain; a 99.3 3.1E-10 1.1E-14 112.6 22.6 221 4-249 1064-1347(1630)
98 4ga2_A E3 SUMO-protein ligase 99.3 1E-11 3.4E-16 95.3 9.7 123 78-219 2-126 (150)
99 1hh8_A P67PHOX, NCF-2, neutrop 99.3 1.1E-10 3.9E-15 93.6 16.1 153 72-242 5-167 (213)
100 2pzi_A Probable serine/threoni 99.3 2.3E-11 7.8E-16 115.7 13.8 189 44-252 402-610 (681)
101 2pzi_A Probable serine/threoni 99.3 1.1E-11 3.7E-16 117.9 10.7 146 37-208 437-583 (681)
102 1a17_A Serine/threonine protei 99.3 2.8E-10 9.7E-15 87.1 16.8 138 71-225 11-149 (166)
103 2xm6_A Protein corresponding t 99.3 6.7E-10 2.3E-14 101.1 21.9 160 27-219 57-249 (490)
104 4gco_A Protein STI-1; structur 99.3 5.8E-11 2E-15 88.4 11.3 111 33-161 13-124 (126)
105 2vsy_A XCC0866; transferase, g 99.3 3.9E-11 1.3E-15 111.4 12.6 123 40-180 30-156 (568)
106 3gyz_A Chaperone protein IPGC; 99.2 5.6E-11 1.9E-15 91.5 11.1 103 70-184 33-136 (151)
107 2fo7_A Synthetic consensus TPR 99.2 2.8E-10 9.5E-15 83.3 14.2 129 35-181 3-132 (136)
108 1a17_A Serine/threonine protei 99.2 2.7E-10 9.2E-15 87.2 14.7 134 30-179 10-144 (166)
109 2xm6_A Protein corresponding t 99.2 1.7E-09 5.7E-14 98.4 21.8 151 5-179 59-250 (490)
110 1p5q_A FKBP52, FK506-binding p 99.2 1.6E-10 5.6E-15 100.4 14.4 136 32-179 146-292 (336)
111 1p5q_A FKBP52, FK506-binding p 99.2 2.8E-10 9.7E-15 98.9 15.8 155 46-219 126-291 (336)
112 3mkr_A Coatomer subunit epsilo 99.2 2.8E-09 9.4E-14 90.8 21.1 161 34-220 66-227 (291)
113 3n71_A Histone lysine methyltr 99.2 9.5E-10 3.3E-14 100.4 18.1 133 85-219 322-461 (490)
114 3upv_A Heat shock protein STI1 99.2 3.8E-10 1.3E-14 83.1 12.6 97 74-182 5-102 (126)
115 3rkv_A Putative peptidylprolyl 99.2 3.4E-10 1.2E-14 87.3 12.7 104 32-141 10-126 (162)
116 3gyz_A Chaperone protein IPGC; 99.2 6.8E-10 2.3E-14 85.4 14.1 100 109-221 33-132 (151)
117 2vsy_A XCC0866; transferase, g 99.2 2.4E-10 8.2E-15 106.0 13.7 133 1-145 1-161 (568)
118 3rkv_A Putative peptidylprolyl 99.2 3.8E-10 1.3E-14 87.1 12.6 111 69-185 7-130 (162)
119 3sz7_A HSC70 cochaperone (SGT) 99.2 3.3E-10 1.1E-14 87.6 12.2 104 70-185 8-112 (164)
120 2fo7_A Synthetic consensus TPR 99.2 1.4E-09 4.8E-14 79.5 14.9 127 74-219 2-129 (136)
121 3rjv_A Putative SEL1 repeat pr 99.2 1.2E-09 4.1E-14 88.5 15.4 155 6-180 3-196 (212)
122 3upv_A Heat shock protein STI1 99.1 5.9E-10 2E-14 82.1 12.2 120 32-163 3-123 (126)
123 2vyi_A SGTA protein; chaperone 99.1 1.9E-09 6.3E-14 78.6 14.6 123 68-209 7-130 (131)
124 2ond_A Cleavage stimulation fa 99.1 4.9E-09 1.7E-13 89.6 18.9 199 35-256 101-301 (308)
125 2fbn_A 70 kDa peptidylprolyl i 99.1 7.7E-10 2.6E-14 88.2 12.6 131 70-213 35-176 (198)
126 2vgx_A Chaperone SYCD; alterna 99.1 1.1E-09 3.9E-14 83.6 12.4 105 70-186 18-123 (148)
127 2xcb_A PCRH, regulatory protei 99.1 2.7E-09 9.2E-14 80.5 14.3 105 70-186 15-120 (142)
128 1xi4_A Clathrin heavy chain; a 99.1 5.7E-09 2E-13 103.7 20.2 161 27-218 1063-1246(1630)
129 2lni_A Stress-induced-phosphop 99.1 1.7E-09 5.9E-14 79.4 12.3 118 71-207 14-132 (133)
130 2fbn_A 70 kDa peptidylprolyl i 99.1 4.4E-10 1.5E-14 89.7 9.6 131 30-172 35-176 (198)
131 2r5s_A Uncharacterized protein 99.1 4.3E-10 1.5E-14 88.1 9.2 160 36-219 9-170 (176)
132 1kt0_A FKBP51, 51 kDa FK506-bi 99.1 2.1E-09 7.2E-14 97.3 15.0 150 47-215 248-407 (457)
133 3qou_A Protein YBBN; thioredox 99.1 7.3E-10 2.5E-14 94.1 11.2 161 36-219 120-281 (287)
134 2r5s_A Uncharacterized protein 99.1 3.2E-10 1.1E-14 88.9 8.2 150 9-180 7-172 (176)
135 1ihg_A Cyclophilin 40; ppiase 99.1 3.5E-09 1.2E-13 93.3 15.3 128 73-213 223-361 (370)
136 1kt0_A FKBP51, 51 kDa FK506-bi 99.1 3E-09 1E-13 96.3 15.1 135 32-178 267-412 (457)
137 1elr_A TPR2A-domain of HOP; HO 99.1 7.1E-09 2.4E-13 75.6 14.5 104 72-181 3-108 (131)
138 1ihg_A Cyclophilin 40; ppiase 99.1 1.6E-09 5.6E-14 95.5 13.0 129 33-173 223-362 (370)
139 1elr_A TPR2A-domain of HOP; HO 99.1 6.8E-09 2.3E-13 75.7 14.2 121 32-165 3-125 (131)
140 2ond_A Cleavage stimulation fa 99.0 6.3E-09 2.2E-13 88.9 16.0 152 45-220 69-230 (308)
141 3sz7_A HSC70 cochaperone (SGT) 99.0 4.6E-09 1.6E-13 81.0 13.7 103 106-221 5-107 (164)
142 1na0_A Designed protein CTPR3; 99.0 4.4E-09 1.5E-13 75.9 12.4 117 71-206 7-124 (125)
143 2vyi_A SGTA protein; chaperone 99.0 7E-09 2.4E-13 75.5 13.3 121 30-168 9-130 (131)
144 3qww_A SET and MYND domain-con 99.0 4.3E-09 1.5E-13 94.6 14.3 101 45-145 310-415 (433)
145 2vgx_A Chaperone SYCD; alterna 99.0 1.6E-08 5.5E-13 77.1 15.1 100 109-221 18-117 (148)
146 2lni_A Stress-induced-phosphop 99.0 4.1E-09 1.4E-13 77.3 11.4 119 31-167 14-133 (133)
147 3qwp_A SET and MYND domain-con 99.0 7.1E-09 2.4E-13 93.2 14.9 136 29-165 284-426 (429)
148 3qww_A SET and MYND domain-con 99.0 7.5E-09 2.6E-13 93.0 15.0 95 87-181 313-411 (433)
149 3q49_B STIP1 homology and U bo 99.0 4.1E-09 1.4E-13 78.2 10.9 100 73-184 9-109 (137)
150 3qou_A Protein YBBN; thioredox 99.0 2.8E-09 9.7E-14 90.4 11.1 152 9-181 118-284 (287)
151 2xcb_A PCRH, regulatory protei 99.0 2E-08 6.8E-13 75.7 14.1 100 110-222 16-115 (142)
152 2c2l_A CHIP, carboxy terminus 99.0 1.4E-09 4.9E-14 92.0 8.3 101 34-146 5-106 (281)
153 2xev_A YBGF; tetratricopeptide 99.0 6.9E-09 2.4E-13 76.1 10.9 105 75-185 4-109 (129)
154 3e4b_A ALGK; tetratricopeptide 99.0 2.4E-08 8.1E-13 90.2 16.6 85 40-139 183-278 (452)
155 1hxi_A PEX5, peroxisome target 98.9 3.1E-09 1.1E-13 78.3 8.4 96 76-183 20-116 (121)
156 3q49_B STIP1 homology and U bo 98.9 5.4E-08 1.9E-12 72.0 15.3 99 111-222 8-106 (137)
157 1b89_A Protein (clathrin heavy 98.9 3.2E-09 1.1E-13 94.9 9.4 190 27-249 46-274 (449)
158 2e2e_A Formate-dependent nitri 98.9 2.5E-09 8.7E-14 83.4 7.8 123 45-185 22-148 (177)
159 2e2e_A Formate-dependent nitri 98.9 5.4E-09 1.8E-13 81.5 9.6 115 87-220 25-142 (177)
160 3k9i_A BH0479 protein; putativ 98.9 3.3E-09 1.1E-13 77.3 7.3 91 87-186 5-95 (117)
161 3qwp_A SET and MYND domain-con 98.9 3.2E-08 1.1E-12 88.9 15.2 108 74-181 289-400 (429)
162 2c2l_A CHIP, carboxy terminus 98.9 4.4E-08 1.5E-12 82.8 15.3 101 73-185 4-105 (281)
163 1elw_A TPR1-domain of HOP; HOP 98.9 2.1E-08 7.2E-13 71.6 11.5 100 73-184 4-104 (118)
164 1wao_1 Serine/threonine protei 98.9 1.1E-09 3.6E-14 99.9 5.4 125 74-217 7-134 (477)
165 3e4b_A ALGK; tetratricopeptide 98.9 1.6E-07 5.4E-12 84.8 19.6 156 28-219 194-384 (452)
166 2l6j_A TPR repeat-containing p 98.9 1.2E-09 4E-14 78.1 4.3 99 73-177 4-103 (111)
167 2xev_A YBGF; tetratricopeptide 98.9 3.2E-08 1.1E-12 72.5 12.2 100 114-220 4-103 (129)
168 1na0_A Designed protein CTPR3; 98.9 4E-08 1.4E-12 70.7 11.9 117 32-166 8-125 (125)
169 2dba_A Smooth muscle cell asso 98.9 6.7E-08 2.3E-12 72.1 13.4 104 73-185 28-132 (148)
170 2if4_A ATFKBP42; FKBP-like, al 98.9 4E-09 1.4E-13 91.7 7.5 142 32-185 178-332 (338)
171 1wao_1 Serine/threonine protei 98.8 1.3E-09 4.5E-14 99.3 4.0 120 39-176 12-134 (477)
172 1hxi_A PEX5, peroxisome target 98.8 4E-08 1.4E-12 72.2 11.3 94 114-220 19-112 (121)
173 1elw_A TPR1-domain of HOP; HOP 98.8 1.3E-07 4.4E-12 67.3 13.4 96 111-219 3-98 (118)
174 2kck_A TPR repeat; tetratricop 98.8 3.1E-09 1E-13 75.4 4.3 98 74-181 7-106 (112)
175 2if4_A ATFKBP42; FKBP-like, al 98.8 6.6E-09 2.3E-13 90.3 7.3 110 70-185 176-297 (338)
176 1klx_A Cysteine rich protein B 98.8 5.7E-08 2E-12 73.2 11.7 108 47-180 9-125 (138)
177 1b89_A Protein (clathrin heavy 98.8 4.5E-08 1.6E-12 87.4 12.6 189 5-228 48-281 (449)
178 2ooe_A Cleavage stimulation fa 98.8 1.4E-07 4.9E-12 86.4 16.4 164 40-223 328-493 (530)
179 3txn_A 26S proteasome regulato 98.8 2.1E-05 7E-10 69.4 29.2 220 36-259 22-299 (394)
180 4f3v_A ESX-1 secretion system 98.8 6.4E-08 2.2E-12 81.7 11.9 139 32-184 101-240 (282)
181 2dba_A Smooth muscle cell asso 98.8 1.3E-07 4.6E-12 70.4 12.2 103 33-144 28-131 (148)
182 3k9i_A BH0479 protein; putativ 98.7 2E-08 7E-13 73.0 7.0 92 45-145 2-94 (117)
183 2kck_A TPR repeat; tetratricop 98.7 5.6E-08 1.9E-12 68.7 9.0 96 113-219 7-103 (112)
184 1klx_A Cysteine rich protein B 98.7 6.4E-07 2.2E-11 67.3 14.1 114 87-233 10-131 (138)
185 2l6j_A TPR repeat-containing p 98.7 5.6E-08 1.9E-12 69.1 7.7 95 111-212 3-97 (111)
186 2ooe_A Cleavage stimulation fa 98.7 2.6E-07 8.9E-12 84.7 13.7 151 46-220 292-452 (530)
187 1na3_A Designed protein CTPR2; 98.7 3.2E-07 1.1E-11 62.6 11.0 86 108-206 5-90 (91)
188 3lpz_A GET4 (YOR164C homolog); 98.6 5.6E-05 1.9E-09 64.9 26.0 230 7-264 11-294 (336)
189 1zu2_A Mitochondrial import re 98.6 3.2E-08 1.1E-12 76.2 3.8 89 44-144 13-123 (158)
190 4f3v_A ESX-1 secretion system 98.6 2.4E-07 8.2E-12 78.2 9.3 194 26-240 19-249 (282)
191 1zu2_A Mitochondrial import re 98.5 1.4E-07 4.7E-12 72.6 5.7 87 87-185 17-124 (158)
192 2kat_A Uncharacterized protein 98.5 2.8E-07 9.7E-12 66.4 7.1 82 90-183 3-84 (115)
193 1na3_A Designed protein CTPR2; 98.5 5.4E-07 1.8E-11 61.4 8.0 85 70-166 6-91 (91)
194 3ma5_A Tetratricopeptide repea 98.5 1.1E-06 3.7E-11 62.0 9.2 65 75-145 9-74 (100)
195 2wpv_A GET4, UPF0363 protein Y 98.4 0.00026 9E-09 60.3 23.9 229 7-264 12-290 (312)
196 3ma5_A Tetratricopeptide repea 98.4 2.3E-06 7.9E-11 60.2 9.4 66 112-183 7-72 (100)
197 2kat_A Uncharacterized protein 98.3 1E-06 3.4E-11 63.4 6.8 85 51-147 3-88 (115)
198 3dra_A Protein farnesyltransfe 98.3 3.2E-05 1.1E-09 66.1 16.1 203 40-263 74-304 (306)
199 3mv2_B Coatomer subunit epsilo 98.3 4.8E-05 1.6E-09 64.9 16.5 190 37-242 104-307 (310)
200 2v5f_A Prolyl 4-hydroxylase su 98.2 1.2E-05 4E-10 57.2 10.4 73 113-185 6-79 (104)
201 3dss_A Geranylgeranyl transfer 98.1 0.00024 8.2E-09 61.3 17.5 188 49-262 90-319 (331)
202 4b4t_P 26S proteasome regulato 98.1 0.0021 7.3E-08 57.7 23.7 107 111-218 136-243 (445)
203 3ly7_A Transcriptional activat 98.0 7.2E-05 2.5E-09 65.2 12.4 146 27-185 191-343 (372)
204 2kc7_A BFR218_protein; tetratr 98.0 1.1E-05 3.8E-10 55.9 5.3 87 78-184 5-93 (99)
205 3ffl_A Anaphase-promoting comp 97.9 0.00063 2.2E-08 52.1 14.8 102 77-178 25-148 (167)
206 2kc7_A BFR218_protein; tetratr 97.9 5.6E-05 1.9E-09 52.3 7.7 64 116-185 4-68 (99)
207 1dce_A Protein (RAB geranylger 97.9 0.00017 5.9E-09 66.8 13.0 139 30-186 46-226 (567)
208 2v5f_A Prolyl 4-hydroxylase su 97.8 0.00012 4.1E-09 51.8 8.9 71 74-144 6-78 (104)
209 4b4t_S RPN3, 26S proteasome re 97.7 0.00012 4.2E-09 66.3 9.3 161 95-259 214-384 (523)
210 3q7a_A Farnesyltransferase alp 97.7 0.00061 2.1E-08 59.1 13.3 140 25-185 49-200 (349)
211 3mv2_B Coatomer subunit epsilo 97.7 0.0015 5.2E-08 55.6 15.2 129 76-218 103-236 (310)
212 1dce_A Protein (RAB geranylger 97.6 0.0005 1.7E-08 63.7 12.5 123 45-185 40-177 (567)
213 3dra_A Protein farnesyltransfe 97.6 0.0067 2.3E-07 51.6 18.3 140 25-185 28-179 (306)
214 4e6h_A MRNA 3'-END-processing 97.6 0.0071 2.4E-07 57.2 19.5 195 40-252 350-578 (679)
215 3txn_A 26S proteasome regulato 97.5 0.036 1.2E-06 48.8 22.2 150 31-180 56-209 (394)
216 3dss_A Geranylgeranyl transfer 97.4 0.0029 9.9E-08 54.5 13.1 123 45-185 41-178 (331)
217 4e6h_A MRNA 3'-END-processing 97.4 0.021 7.2E-07 53.9 19.7 179 27-220 357-568 (679)
218 4g26_A Pentatricopeptide repea 97.3 0.029 9.8E-07 51.1 19.2 187 5-220 6-202 (501)
219 3ffl_A Anaphase-promoting comp 97.3 0.0066 2.3E-07 46.5 12.4 99 120-218 28-147 (167)
220 1pc2_A Mitochondria fission pr 97.2 0.0039 1.3E-07 47.2 10.2 72 111-186 31-105 (152)
221 3ly7_A Transcriptional activat 97.0 0.014 4.8E-07 50.8 13.7 150 87-255 214-369 (372)
222 3q7a_A Farnesyltransferase alp 97.0 0.0043 1.5E-07 53.8 10.2 161 82-261 63-251 (349)
223 3bee_A Putative YFRE protein; 97.0 0.0032 1.1E-07 43.5 7.7 66 112-183 6-74 (93)
224 4b4t_R RPN7, 26S proteasome re 96.8 0.05 1.7E-06 48.4 15.8 192 54-250 111-321 (429)
225 3u64_A Protein TP_0956; tetrat 96.6 0.0039 1.3E-07 52.4 6.6 86 87-181 178-269 (301)
226 4b4t_P 26S proteasome regulato 96.6 0.11 3.7E-06 46.5 16.6 118 32-149 136-255 (445)
227 1pc2_A Mitochondria fission pr 96.6 0.026 8.9E-07 42.7 10.5 82 128-220 14-98 (152)
228 3mkq_A Coatomer beta'-subunit; 96.6 0.17 5.9E-06 47.9 18.9 86 74-177 682-774 (814)
229 3u64_A Protein TP_0956; tetrat 96.5 0.28 9.7E-06 41.1 20.7 84 127-220 178-267 (301)
230 3bee_A Putative YFRE protein; 96.4 0.016 5.4E-07 39.9 7.5 65 74-144 7-75 (93)
231 2wpv_A GET4, UPF0363 protein Y 96.3 0.42 1.5E-05 40.5 22.1 196 27-224 47-275 (312)
232 4g26_A Pentatricopeptide repea 96.1 0.45 1.5E-05 43.1 17.6 151 76-242 29-202 (501)
233 4b4t_R RPN7, 26S proteasome re 95.9 0.13 4.5E-06 45.7 13.2 106 38-146 136-242 (429)
234 1nzn_A CGI-135 protein, fissio 95.7 0.12 4.1E-06 37.6 9.8 71 112-186 35-108 (126)
235 3mkq_A Coatomer beta'-subunit; 95.6 1 3.5E-05 42.5 18.6 26 113-138 682-707 (814)
236 2uy1_A Cleavage stimulation fa 95.4 1.5 5E-05 39.6 18.5 64 112-182 286-350 (493)
237 2uy1_A Cleavage stimulation fa 94.5 2.5 8.7E-05 38.0 19.5 46 127-178 335-380 (493)
238 4h7y_A Dual specificity protei 94.2 1.3 4.4E-05 33.3 12.6 120 114-245 15-142 (161)
239 3lpz_A GET4 (YOR164C homolog); 94.0 2.5 8.7E-05 36.0 23.5 195 27-224 49-275 (336)
240 3t5x_A PCI domain-containing p 93.9 0.32 1.1E-05 38.5 8.7 88 152-242 14-106 (203)
241 3mkq_B Coatomer subunit alpha; 93.8 1.3 4.5E-05 34.1 11.8 43 125-178 18-60 (177)
242 1ya0_A SMG-7 transcript varian 93.4 0.33 1.1E-05 44.0 8.9 62 112-179 152-213 (497)
243 1y8m_A FIS1; mitochondria, unk 93.1 0.95 3.3E-05 33.6 9.4 73 109-186 36-111 (144)
244 2ff4_A Probable regulatory pro 93.0 2.3 7.8E-05 37.0 13.6 93 125-224 128-236 (388)
245 3o48_A Mitochondria fission 1 92.9 1.3 4.5E-05 32.4 9.8 71 111-186 39-112 (134)
246 2wm9_A Dedicator of cytokinesi 92.3 1.7 5.8E-05 38.5 11.9 95 30-124 8-140 (428)
247 2yin_A DOCK2, dedicator of cyt 92.2 4.4 0.00015 35.9 14.4 128 35-164 17-145 (436)
248 4gns_B Protein CSD3, chitin bi 92.2 3.6 0.00012 39.1 14.6 58 114-177 339-396 (754)
249 3mkq_B Coatomer subunit alpha; 92.1 3.2 0.00011 31.9 13.9 95 95-219 21-115 (177)
250 1ya0_A SMG-7 transcript varian 92.1 0.31 1.1E-05 44.1 7.0 62 74-141 153-215 (497)
251 2r17_C Vacuolar protein sortin 92.1 4.7 0.00016 33.7 19.2 120 27-146 93-229 (298)
252 3o48_A Mitochondria fission 1 92.1 1.8 6.1E-05 31.7 9.6 63 152-220 40-105 (134)
253 4h7y_A Dual specificity protei 91.7 3.3 0.00011 31.1 11.2 49 87-141 75-123 (161)
254 3t5v_B Nuclear mRNA export pro 91.2 3.2 0.00011 37.1 12.4 130 113-243 177-323 (455)
255 4b4t_O 26S proteasome regulato 90.8 2.3 7.8E-05 37.2 11.0 155 87-241 91-273 (393)
256 2ff4_A Probable regulatory pro 90.8 1 3.6E-05 39.2 8.8 60 114-179 173-232 (388)
257 1nzn_A CGI-135 protein, fissio 90.6 0.69 2.4E-05 33.6 6.2 81 129-220 18-101 (126)
258 4fhn_B Nucleoporin NUP120; pro 90.3 2.7 9.3E-05 42.0 12.4 128 35-171 845-990 (1139)
259 1y8m_A FIS1; mitochondria, unk 90.1 3.2 0.00011 30.7 9.5 63 152-220 39-104 (144)
260 2crb_A Nuclear receptor bindin 90.0 0.81 2.8E-05 31.0 5.6 39 107-145 10-48 (97)
261 2w2u_A Hypothetical P60 katani 88.7 1 3.5E-05 30.0 5.5 30 115-144 22-51 (83)
262 4b4t_S RPN3, 26S proteasome re 88.6 1.6 5.5E-05 39.5 8.3 142 68-222 226-370 (523)
263 2yin_A DOCK2, dedicator of cyt 88.3 4.4 0.00015 35.9 10.9 98 27-124 29-145 (436)
264 2v6x_A Vacuolar protein sortin 87.9 1.4 4.7E-05 29.4 5.8 34 111-144 12-45 (85)
265 2v6y_A AAA family ATPase, P60 87.5 1.4 4.7E-05 29.4 5.5 29 116-144 15-43 (83)
266 4a5x_A MITD1, MIT domain-conta 87.5 1.4 4.6E-05 29.7 5.5 34 111-144 15-48 (86)
267 2cpt_A SKD1 protein, vacuolar 87.0 0.92 3.2E-05 32.4 4.7 31 114-144 20-50 (117)
268 1wfd_A Hypothetical protein 15 86.3 1.9 6.6E-05 29.4 5.9 33 112-144 15-47 (93)
269 4fhn_B Nucleoporin NUP120; pro 84.4 4.3 0.00015 40.6 9.7 100 77-177 846-963 (1139)
270 3spa_A Mtrpol, DNA-directed RN 80.7 27 0.00092 34.6 13.2 102 111-220 126-228 (1134)
271 2crb_A Nuclear receptor bindin 79.4 4.7 0.00016 27.3 5.3 32 33-64 15-46 (97)
272 2w2u_A Hypothetical P60 katani 78.1 6.2 0.00021 26.1 5.8 34 30-64 17-50 (83)
273 2v6y_A AAA family ATPase, P60 76.5 7.3 0.00025 25.8 5.8 32 31-63 10-41 (83)
274 4gns_B Protein CSD3, chitin bi 72.6 25 0.00085 33.4 10.4 85 127-218 300-396 (754)
275 1wfd_A Hypothetical protein 15 71.9 10 0.00036 25.6 5.8 37 27-64 10-46 (93)
276 3kae_A CDC27, possible protein 71.8 32 0.0011 26.5 10.5 65 115-179 65-141 (242)
277 2cpt_A SKD1 protein, vacuolar 71.3 9.6 0.00033 27.0 5.7 35 29-64 15-49 (117)
278 4a5x_A MITD1, MIT domain-conta 68.6 12 0.00042 24.9 5.4 37 27-64 11-47 (86)
279 4gq2_M Nucleoporin NUP120; bet 66.9 25 0.00085 34.4 9.4 66 78-143 845-928 (950)
280 2dl1_A Spartin; SPG20, MIT, st 65.7 8.5 0.00029 27.2 4.2 27 117-143 27-53 (116)
281 2v6x_A Vacuolar protein sortin 62.8 27 0.00093 22.9 6.3 35 29-64 10-44 (85)
282 4gq4_A Menin; tumor suppressor 61.7 31 0.001 30.3 7.8 92 87-180 237-331 (489)
283 3ax2_A Mitochondrial import re 60.8 9.4 0.00032 24.6 3.5 30 116-145 21-50 (73)
284 2o8p_A 14-3-3 domain containin 60.6 34 0.0012 27.3 7.4 56 87-142 140-198 (227)
285 2br9_A 14-3-3E, 14-3-3 protein 60.2 41 0.0014 26.9 8.0 53 89-141 147-202 (234)
286 3spa_A Mtrpol, DNA-directed RN 59.5 1.4E+02 0.0049 29.6 13.1 103 71-180 125-229 (1134)
287 3kae_A CDC27, possible protein 57.2 64 0.0022 24.8 9.5 64 78-141 67-143 (242)
288 4gq2_M Nucleoporin NUP120; bet 56.9 44 0.0015 32.6 9.1 65 116-180 844-925 (950)
289 2rpa_A Katanin P60 ATPase-cont 56.4 10 0.00035 24.8 3.1 27 117-143 17-43 (78)
290 2wm9_A Dedicator of cytokinesi 56.3 1E+02 0.0035 26.9 12.0 35 47-81 5-39 (428)
291 1o9d_A 14-3-3-like protein C; 55.7 52 0.0018 26.8 8.0 53 89-141 152-207 (260)
292 3efz_A 14-3-3 protein; 14-3-3, 55.3 48 0.0017 27.1 7.6 53 89-141 169-226 (268)
293 1wy6_A Hypothetical protein ST 54.0 64 0.0022 23.9 7.6 28 152-179 125-152 (172)
294 2wb7_A PT26-6P; extra chromoso 53.7 74 0.0025 28.5 9.0 27 114-141 490-516 (526)
295 1om2_A Protein (mitochondrial 53.6 16 0.00055 24.8 3.8 29 116-144 24-52 (95)
296 3iqu_A 14-3-3 protein sigma; s 53.6 64 0.0022 25.8 8.0 52 89-140 150-204 (236)
297 3uzd_A 14-3-3 protein gamma; s 51.6 72 0.0025 25.7 8.1 54 89-142 148-204 (248)
298 3re2_A Predicted protein; meni 50.8 1.2E+02 0.0042 26.1 10.3 80 152-236 255-341 (472)
299 3u84_A Menin; MLL, JUND, ledgf 50.3 1.1E+02 0.0037 26.9 9.3 88 89-179 254-345 (550)
300 2ijq_A Hypothetical protein; s 49.6 79 0.0027 23.6 8.2 84 156-239 36-125 (161)
301 2npm_A 14-3-3 domain containin 48.4 81 0.0028 25.6 8.0 53 89-141 173-227 (260)
302 2xze_A STAM-binding protein; h 45.5 38 0.0013 24.9 5.1 33 111-143 39-71 (146)
303 3u84_A Menin; MLL, JUND, ledgf 40.5 1.9E+02 0.0066 25.4 10.2 66 170-240 297-367 (550)
304 2wvi_A Mitotic checkpoint seri 40.4 1.1E+02 0.0039 22.8 8.2 80 92-181 43-125 (164)
305 4b4t_O 26S proteasome regulato 40.3 1.8E+02 0.006 25.0 15.2 124 91-218 58-194 (393)
306 3ubw_A 14-3-3E, 14-3-3 protein 40.1 1.5E+02 0.0051 24.1 10.8 52 128-179 172-226 (261)
307 3re2_A Predicted protein; meni 39.7 1.8E+02 0.0063 25.0 12.3 90 89-180 232-324 (472)
308 4a1g_A Mitotic checkpoint seri 39.1 1.1E+02 0.0039 22.5 10.0 116 55-181 12-130 (152)
309 1zb1_A BRO1 protein; AIP1, BRO 38.8 1.9E+02 0.0064 24.8 10.3 17 130-146 217-233 (392)
310 4gq4_A Menin; tumor suppressor 38.4 1.4E+02 0.005 26.1 8.2 71 75-146 264-337 (489)
311 3rau_A Tyrosine-protein phosph 37.5 1.9E+02 0.0065 24.5 10.3 37 28-65 113-158 (363)
312 2wb7_A PT26-6P; extra chromoso 35.5 2.4E+02 0.0084 25.2 10.7 19 129-147 449-467 (526)
313 2dl1_A Spartin; SPG20, MIT, st 35.2 56 0.0019 23.0 4.4 13 50-62 20-32 (116)
314 2cwy_A Hypothetical protein TT 35.2 1E+02 0.0034 20.6 6.1 66 158-226 7-72 (94)
315 3eab_A Spastin; spastin, MIT, 34.9 34 0.0012 22.9 3.1 16 126-141 33-48 (89)
316 2npm_A 14-3-3 domain containin 34.6 1.8E+02 0.0063 23.5 16.8 80 105-184 139-230 (260)
317 1col_A Colicin A; antibacteria 32.8 1.7E+02 0.0058 22.7 7.1 56 208-263 55-126 (204)
318 2ymb_A MITD1, MIT domain-conta 32.6 9.3 0.00032 31.2 0.0 34 112-145 23-56 (257)
319 3ubw_A 14-3-3E, 14-3-3 protein 32.1 2E+02 0.007 23.3 14.8 29 35-63 33-61 (261)
320 2br9_A 14-3-3E, 14-3-3 protein 28.5 2.2E+02 0.0076 22.6 15.2 56 128-183 146-204 (234)
321 1wy6_A Hypothetical protein ST 28.0 1.7E+02 0.0057 21.7 6.0 36 106-141 119-154 (172)
322 1zb1_A BRO1 protein; AIP1, BRO 27.9 2.9E+02 0.0098 23.6 11.1 39 28-66 119-162 (392)
323 4aez_C MAD3, mitotic spindle c 27.8 2.2E+02 0.0077 22.4 12.0 123 49-181 51-179 (223)
324 4a1g_A Mitotic checkpoint seri 26.5 1.3E+02 0.0044 22.2 5.3 38 104-141 93-130 (152)
325 1o9d_A 14-3-3-like protein C; 25.7 2.7E+02 0.0091 22.5 15.8 77 105-181 118-207 (260)
326 3t5x_A PCI domain-containing p 25.6 2.1E+02 0.0073 21.9 6.9 96 109-220 11-106 (203)
327 4ady_A RPN2, 26S proteasome re 25.0 5E+02 0.017 25.4 15.7 43 132-179 215-257 (963)
328 3myv_A SUSD superfamily protei 23.8 1.9E+02 0.0067 25.2 7.0 54 128-181 164-219 (454)
329 3kez_A Putative sugar binding 22.0 2.3E+02 0.0077 24.8 7.1 54 128-181 170-225 (461)
330 3iqc_A FLIS, flagellar protein 22.0 2.2E+02 0.0075 20.2 9.1 36 30-66 34-69 (131)
331 2a9u_A Ubiquitin carboxyl-term 21.8 2.4E+02 0.0081 20.5 8.2 40 110-149 40-79 (144)
332 2zan_A Vacuolar protein sortin 21.4 20 0.00068 31.6 0.0 25 120-144 19-43 (444)
333 3efz_A 14-3-3 protein; 14-3-3, 20.2 3.5E+02 0.012 22.0 7.9 53 49-101 168-226 (268)
No 1
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=100.00 E-value=5.2e-41 Score=288.48 Aligned_cols=266 Identities=33% Similarity=0.550 Sum_probs=239.8
Q ss_pred HhhHHHHHHHHHHhhcc----ccCCC---CC-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024043 5 IARAEEFEKKAEKKLNG----WGLFG---SK-YEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAY 76 (273)
Q Consensus 5 ~~~a~~l~~~Aek~~k~----~~~~~---~~-~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~ 76 (273)
|++|++++++|+|++|+ |++|+ |+ +++|+++|.++|++|...|+|++|+++|.+|++++.+.+++...+.++
T Consensus 1 ~~~a~~~~~~a~k~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~ 80 (292)
T 1qqe_A 1 ISDPVELLKRAEKKGVPSSGFMKLFSGSDSYKFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTY 80 (292)
T ss_dssp CCCHHHHHHHHHHHSSCCCTHHHHHSCCSHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhCcCCCcchhcCCCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 46899999999999983 12333 44 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHhccCCcccHHHH
Q 024043 77 VDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE-HNIEQTIVFFEKAADMFQNEEVTTSANQC 154 (273)
Q Consensus 77 ~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~-g~~~~A~~~y~~Al~~~~~~~~~~~~~~~ 154 (273)
.++|.+|... ++++|+.+|++|+.+++..|++..++.++.++|.+|... |++++|+.+|++|+++++..+++.....+
T Consensus 81 ~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~ 160 (292)
T 1qqe_A 81 VEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKC 160 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHH
Confidence 9999999888 999999999999999999999999999999999999996 99999999999999999988877777889
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH--------------
Q 024043 155 KQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ-------------- 220 (273)
Q Consensus 155 ~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~-------------- 220 (273)
+.++|.++..+|+|++|+++|++++...+..+...++....++++|.|++..||++.|..+++++.
T Consensus 161 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~ 240 (292)
T 1qqe_A 161 FIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNF 240 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHH
Confidence 999999999999999999999999877666554445666788999999999999999999998754
Q ss_pred --HHHHHHhhcCHhHHHHHHHhhhccCCCchhHHHHHHHHHHhccccccccCCCC
Q 024043 221 --DIAASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKLKAKELEEDDLT 273 (273)
Q Consensus 221 --~ll~a~~~~d~~~~~~~~~~~~~~~~ld~~~~~~l~~~~~~~~~~~~~~~~~~ 273 (273)
.+..++..+|.+.+++++..|+.+.++|||.+.++++||+.+++ +++|||
T Consensus 241 l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~~~~~---~~~~~~ 292 (292)
T 1qqe_A 241 LKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKESIQQ---QEDDLL 292 (292)
T ss_dssp HHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHH---HHCC--
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhhc---cccccC
Confidence 35667777899999999999999999999999999999999963 456775
No 2
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=100.00 E-value=9.9e-36 Score=257.32 Aligned_cols=256 Identities=23% Similarity=0.288 Sum_probs=232.7
Q ss_pred CCc-hHhhHHHHHHHHHHhhc-cccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024043 1 MGD-QIARAEEFEKKAEKKLN-GWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVD 78 (273)
Q Consensus 1 ~~~-~~~~a~~l~~~Aek~~k-~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~ 78 (273)
|++ ..++|.+++++|+|+++ +++.|+|+|++|+.+|.+++.+|...|+|++|+++|.++++++.+.+++..++.++.+
T Consensus 2 ~~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~ 81 (307)
T 2ifu_A 2 IAAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQ 81 (307)
T ss_dssp -CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 666 58899999999999998 4544679999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHH
Q 024043 79 AAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQK 157 (273)
Q Consensus 79 ~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~ 157 (273)
+|.+|... ++++|+.+|++|++++...|++...+.++.++|.+|.. |++++|+.+|++|+++++..+++.....++.+
T Consensus 82 lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~ 160 (307)
T 2ifu_A 82 AGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGK 160 (307)
T ss_dssp HHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 99999988 99999999999999999999999999999999999999 99999999999999999998887788899999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH---------------HH
Q 024043 158 VAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ---------------DI 222 (273)
Q Consensus 158 ~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~---------------~l 222 (273)
+|.++..+|+|++|+++|++++......+. .+.....++++|.+++..||+..|..+++++. .+
T Consensus 161 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~p~~~~~~e~~~l~~l 239 (307)
T 2ifu_A 161 ASRLLVRQQKFDEAAASLQKEKSMYKEMEN-YPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSGSEDCAALEDL 239 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTSTTSHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence 999999999999999999999876555432 34455678889999999999999999998853 56
Q ss_pred HHHHhhcCHhHHHHHHHhhhccCCCchhHHHHHHHHH
Q 024043 223 AASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVK 259 (273)
Q Consensus 223 l~a~~~~d~~~~~~~~~~~~~~~~ld~~~~~~l~~~~ 259 (273)
+.+++.+|.+.+++ +..|+.+.+||||+++++.+++
T Consensus 240 ~~~~~~~d~~~~~~-~~~~~~~~~ld~~~~~~~~~l~ 275 (307)
T 2ifu_A 240 LQAYDEQDEEQLLR-VCRSPLVTYMDNDYAKLAISLK 275 (307)
T ss_dssp HHHHHTTCHHHHHH-HTTSHHHHTSCHHHHHHHHTCC
T ss_pred HHHHHhcCHHHHHH-HHhCchhhhhhHHHHHHHHhCC
Confidence 77788899999999 7779999999999999887664
No 3
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.87 E-value=3.3e-19 Score=157.54 Aligned_cols=206 Identities=20% Similarity=0.129 Sum_probs=167.9
Q ss_pred HhhHHHHHHHHHHhhccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHH
Q 024043 5 IARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLES-KHEAAQAYVDAAHCY 83 (273)
Q Consensus 5 ~~~a~~l~~~Aek~~k~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~aa~~~~~~~~~~ 83 (273)
.++|.+++++|.+.++. .++...-+..+...|.+|...|++++|+.++.+|++++.+.++ ....+.++.++|.+|
T Consensus 119 ~~~A~~~~~~al~~~~~----~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~ 194 (383)
T 3ulq_A 119 YLSAIKFFKKAESKLIF----VKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNF 194 (383)
T ss_dssp HHHHHHHHHHHHTTGGG----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh----CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHH
Confidence 34555555555554442 1344444556666689999999999999999999999999987 889999999999999
Q ss_pred hcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHH
Q 024043 84 KKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYA 162 (273)
Q Consensus 84 ~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~ 162 (273)
... ++++|+.+|++|+++.+..++....+.++.++|.+|..+|++++|+.+|++|+++++..++......++..+|.++
T Consensus 195 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 274 (383)
T 3ulq_A 195 LDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIH 274 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHH
Confidence 888 9999999999999999999999999999999999999999999999999999999999887556689999999999
Q ss_pred HHhcCHHHHHHHHHHHHHHH--hccchhhhchhhHHHHHHHHHHhcCC---HHHHHHHHHH
Q 024043 163 AELEQYHKSIEIYEEIARQS--LNNNLLKYGVKGHLLNAGICQLCKGD---VVAITNALER 218 (273)
Q Consensus 163 ~~~g~y~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~gl~~l~~gd---~~~A~~~~~~ 218 (273)
..+|++++|+++|++++... .+++. + . ..+..++.++...|+ +.+|...+++
T Consensus 275 ~~~g~~~~A~~~~~~al~~~~~~~~~~--~-~-~~~~~l~~~~~~~~~~~~~~~al~~~~~ 331 (383)
T 3ulq_A 275 YKLGKIDKAHEYHSKGMAYSQKAGDVI--Y-L-SEFEFLKSLYLSGPDEEAIQGFFDFLES 331 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHH--H-H-HHHHHHHHHHTSSCCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHcCCHH--H-H-HHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 99999999999999997443 33321 1 1 124557888888888 4444444443
No 4
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.85 E-value=1.1e-18 Score=154.01 Aligned_cols=205 Identities=18% Similarity=0.104 Sum_probs=161.8
Q ss_pred hhHHHHHHHHHHhhccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHh
Q 024043 6 ARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLES-KHEAAQAYVDAAHCYK 84 (273)
Q Consensus 6 ~~a~~l~~~Aek~~k~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~aa~~~~~~~~~~~ 84 (273)
.+|.+.+++|.+.++. .++....+..+...|.+|...|++++|+.++.+|++++.+.++ ....+.++.++|.+|.
T Consensus 118 ~~A~~~~~~al~~~~~----~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~ 193 (378)
T 3q15_A 118 VEAIGYYREAEKELPF----VSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYD 193 (378)
T ss_dssp HHHHHHHHHHHTTGGG----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh----CCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHH
Confidence 3445555555544431 1233444455555688999999999999999999999998886 6789999999999998
Q ss_pred cc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHH
Q 024043 85 KT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAA 163 (273)
Q Consensus 85 ~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~ 163 (273)
.. ++++|+++|++|+.+....++....+.++.++|.+|...|++++|+.+|++|+++++..+++.. ..++..+|.++.
T Consensus 194 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~la~~~~ 272 (378)
T 3q15_A 194 DFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL-PKVLFGLSWTLC 272 (378)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH-HHHHHHHHHHHH
Confidence 88 9999999999999999999999999999999999999999999999999999999998887766 889999999999
Q ss_pred HhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCC---HHHHHHHHH
Q 024043 164 ELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGD---VVAITNALE 217 (273)
Q Consensus 164 ~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd---~~~A~~~~~ 217 (273)
.+|++++|+.++++++......+...+ ...+..++.++...|+ +.+|...++
T Consensus 273 ~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~l~~ly~~~~~~~~~~~al~~~~ 327 (378)
T 3q15_A 273 KAGQTQKAFQFIEEGLDHITARSHKFY--KELFLFLQAVYKETVDERKIHDLLSYFE 327 (378)
T ss_dssp HTTCHHHHHHHHHHHHHHCCTTCCSCH--HHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHHcCCHHH--HHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 999999999999999755332111111 1123445556666777 444444444
No 5
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.85 E-value=3.3e-19 Score=153.52 Aligned_cols=189 Identities=15% Similarity=0.057 Sum_probs=157.6
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcC
Q 024043 27 SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIG 106 (273)
Q Consensus 27 ~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~eA~~~~~~Al~~~~~~g 106 (273)
++...++..|..+|.+|...|++++|+.+|.+|++++...|++...+.++.++|.+|...++++|+.+|++|+++++..|
T Consensus 70 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~g~~~~A~~~~~~Al~~~~~~~ 149 (307)
T 2ifu_A 70 RSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEE 149 (307)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC
Confidence 45556666777778889999999999999999999999999999999999999999976899999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccc
Q 024043 107 RLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNN 186 (273)
Q Consensus 107 ~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~ 186 (273)
++...+.++.++|.+|..+|+|++|+.+|++|+++++..+.......++..+|.++..+|++++|+.+|++++ ..+...
T Consensus 150 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~ 228 (307)
T 2ifu_A 150 RLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFS 228 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTST
T ss_pred ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCC
Confidence 9999999999999999999999999999999999999887766667789999999999999999999999997 444322
Q ss_pred hhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043 187 LLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ 220 (273)
Q Consensus 187 ~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~ 220 (273)
. ......+..++.+ ...||.+.+.. +..|.
T Consensus 229 ~--~~e~~~l~~l~~~-~~~~d~~~~~~-~~~~~ 258 (307)
T 2ifu_A 229 G--SEDCAALEDLLQA-YDEQDEEQLLR-VCRSP 258 (307)
T ss_dssp T--SHHHHHHHHHHHH-HHTTCHHHHHH-HTTSH
T ss_pred C--CHHHHHHHHHHHH-HHhcCHHHHHH-HHhCc
Confidence 1 1111222333333 35788877777 33343
No 6
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.85 E-value=1.6e-18 Score=153.19 Aligned_cols=220 Identities=11% Similarity=0.050 Sum_probs=181.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCC-hhHHHHHHH
Q 024043 39 AANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGR-LSMAARYYK 116 (273)
Q Consensus 39 a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~-~~~~a~~l~ 116 (273)
.|..+...|++++|+.+|.+|..+....+++...+.++..+|.+|... ++++|+.++++|++++...++ ....+.++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 578888999999999999999999999999999999999999999888 999999999999999999998 889999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHH
Q 024043 117 EIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHL 196 (273)
Q Consensus 117 ~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (273)
++|.++...|++++|+.+|++|+++++..+++...+.++.++|.++..+|+|++|+++|++++........ .......+
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 267 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI-LPSLPQAY 267 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-GGGHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc-chhHHHHH
Confidence 99999999999999999999999999999888888899999999999999999999999999754322211 12345678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHH-----------------hhcCHhHHHHHHHhhhccCCCchhHHHHHHHHH
Q 024043 197 LNAGICQLCKGDVVAITNALERYQDIAASM-----------------DEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVK 259 (273)
Q Consensus 197 ~~~gl~~l~~gd~~~A~~~~~~~~~ll~a~-----------------~~~d~~~~~~~~~~~~~~~~ld~~~~~~l~~~~ 259 (273)
.++|.++...|+++.|...+++...+.... ..++.+.+.+++.-+... ...|....++..+.
T Consensus 268 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la 346 (383)
T 3ulq_A 268 FLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVA 346 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHH
Confidence 899999999999999999998866432211 224445566666666655 33344444444444
Q ss_pred H
Q 024043 260 E 260 (273)
Q Consensus 260 ~ 260 (273)
.
T Consensus 347 ~ 347 (383)
T 3ulq_A 347 K 347 (383)
T ss_dssp H
T ss_pred H
Confidence 3
No 7
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.84 E-value=7.4e-19 Score=150.27 Aligned_cols=214 Identities=11% Similarity=0.064 Sum_probs=163.1
Q ss_pred hHhhHHHHHHHHHHhhccccCC----------------CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Q 024043 4 QIARAEEFEKKAEKKLNGWGLF----------------GSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLE 67 (273)
Q Consensus 4 ~~~~a~~l~~~Aek~~k~~~~~----------------~~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 67 (273)
..++|.+++.+|-..+...+.| .++...++..|..+|.+|...|++++|+.+|.+|+.++...|
T Consensus 32 ~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g 111 (292)
T 1qqe_A 32 KFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRG 111 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC
Confidence 3677778888876655411111 023344445555667888899999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhc--cCHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 024043 68 SKHEAAQAYVDAAHCYKK--TSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE 145 (273)
Q Consensus 68 ~~~~aa~~~~~~~~~~~~--~~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~ 145 (273)
++..++.++.++|.+|.. .++++|+.+|++|+.+++..++....+.++.++|.++..+|+|++|+.+|++++++....
T Consensus 112 ~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 191 (292)
T 1qqe_A 112 QFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN 191 (292)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSC
T ss_pred CHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcC
Confidence 999999999999999987 499999999999999999999999999999999999999999999999999999998776
Q ss_pred CCc-ccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043 146 EVT-TSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ 220 (273)
Q Consensus 146 ~~~-~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~ 220 (273)
+.. .....++.++|.++..+|++++|+.+|++++...++.... .....+..++.++ ..+|.....+++..|.
T Consensus 192 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~--~~~~~l~~l~~~~-~~~~~~~~~~A~~~~~ 264 (292)
T 1qqe_A 192 RLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS--RESNFLKSLIDAV-NEGDSEQLSEHCKEFD 264 (292)
T ss_dssp TTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHH-HTTCTTTHHHHHHHHT
T ss_pred CcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc--HHHHHHHHHHHHH-HcCCHHHHHHHHHHhc
Confidence 653 3566789999999999999999999999996433332110 1112233334333 3455555555655553
No 8
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.84 E-value=2.8e-18 Score=151.48 Aligned_cols=217 Identities=12% Similarity=0.074 Sum_probs=180.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCC-hhHHHHHHH
Q 024043 39 AANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGR-LSMAARYYK 116 (273)
Q Consensus 39 a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~-~~~~a~~l~ 116 (273)
.|..+...|++++|+.+|.+|..+....+++...+.++.++|.+|... ++++|+.++++|++++...++ ....+.++.
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 477788999999999999999999999999999999999999999888 999999999999999999887 668999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh--ccchhhhchhh
Q 024043 117 EIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSL--NNNLLKYGVKG 194 (273)
Q Consensus 117 ~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~--~~~~~~~~~~~ 194 (273)
++|.++...|++++|+++|++|+++++..+++...+.++.++|.++..+|++++|+++|++++.... +++ . ...
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~---~-~~~ 262 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPD---L-LPK 262 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGG---G-HHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCh---h-HHH
Confidence 9999999999999999999999999999888888889999999999999999999999999975332 332 2 255
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH---------------HHHH--hhcCHhHHHHHHHhhhccCCCchhHHHHHHH
Q 024043 195 HLLNAGICQLCKGDVVAITNALERYQDI---------------AASM--DEEDIAKFTDVVKEFDSMTPLDPWKTTLLLR 257 (273)
Q Consensus 195 ~~~~~gl~~l~~gd~~~A~~~~~~~~~l---------------l~a~--~~~d~~~~~~~~~~~~~~~~ld~~~~~~l~~ 257 (273)
.+.++|.++...|+++.|...+++...+ +..+ ..++.+.+.+++.-+... ...|....+...
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~ 341 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHH
Confidence 7788999999999999999999986532 2211 334555677777766653 333444444444
Q ss_pred HHH
Q 024043 258 VKE 260 (273)
Q Consensus 258 ~~~ 260 (273)
+..
T Consensus 342 la~ 344 (378)
T 3q15_A 342 AAA 344 (378)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 9
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.83 E-value=1.1e-17 Score=147.18 Aligned_cols=215 Identities=12% Similarity=0.096 Sum_probs=176.5
Q ss_pred HhhHHHHHHHHHHhhcc-------------ccCC-CCCHHHHHHHHHHH--------------------HHHHHHcCCHH
Q 024043 5 IARAEEFEKKAEKKLNG-------------WGLF-GSKYEDAADLFDKA--------------------ANSFKLAKSWD 50 (273)
Q Consensus 5 ~~~a~~l~~~Aek~~k~-------------~~~~-~~~~~~A~~~~~~a--------------------~~~~~~~~~~~ 50 (273)
.++|..++.+|-+.-.. ..++ .+++++|..+|.++ |.+|...|+++
T Consensus 25 ~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 104 (406)
T 3sf4_A 25 CRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFD 104 (406)
T ss_dssp HHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHH
Confidence 56777777777665321 0112 27778887776654 56777889999
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-C--------------------HHHHHHHHHHHHHHHHhcCChh
Q 024043 51 KAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-S--------------------SNEAISCLEQAVNMFCDIGRLS 109 (273)
Q Consensus 51 ~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~--------------------~~eA~~~~~~Al~~~~~~g~~~ 109 (273)
+|+.+|.+++.+....+++...+.++..+|.+|... + +++|+.+|++++.+....++..
T Consensus 105 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~ 184 (406)
T 3sf4_A 105 EAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRA 184 (406)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcH
Confidence 999999999999999999999999999999999777 8 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhh
Q 024043 110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLK 189 (273)
Q Consensus 110 ~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~ 189 (273)
..+.++.++|.++...|++++|+.++++|+++++..+++.....++..+|.++..+|++++|+.+|++++......+ ..
T Consensus 185 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~ 263 (406)
T 3sf4_A 185 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK-DR 263 (406)
T ss_dssp HHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCc-Cc
Confidence 99999999999999999999999999999999998887777788899999999999999999999999875443321 12
Q ss_pred hchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043 190 YGVKGHLLNAGICQLCKGDVVAITNALERYQ 220 (273)
Q Consensus 190 ~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~ 220 (273)
......+..+|.++...|++..|...+++..
T Consensus 264 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 294 (406)
T 3sf4_A 264 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 294 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 3345567788899999999999988888765
No 10
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.82 E-value=1.5e-17 Score=138.86 Aligned_cols=213 Identities=15% Similarity=0.160 Sum_probs=175.6
Q ss_pred HhhHHHHHHHHHHhhccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHH
Q 024043 5 IARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKL--ESKHEAAQAYVDAAHC 82 (273)
Q Consensus 5 ~~~a~~l~~~Aek~~k~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~aa~~~~~~~~~ 82 (273)
+.+|.+++++|-+.++.. .+++...-...+...|.+|...|++++|+.+|.+++.+..+. ++....+.++..+|.+
T Consensus 17 ~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~ 94 (283)
T 3edt_B 17 RGSAVPLCKQALEDLEKT--SGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVL 94 (283)
T ss_dssp SSSHHHHHHHHHHHHHHH--HCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence 679999999999988731 234445566778888999999999999999999999999887 6778889999999999
Q ss_pred Hhcc-CHHHHHHHHHHHHHHHHhcCC--hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC--CcccHHHHHHH
Q 024043 83 YKKT-SSNEAISCLEQAVNMFCDIGR--LSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEE--VTTSANQCKQK 157 (273)
Q Consensus 83 ~~~~-~~~eA~~~~~~Al~~~~~~g~--~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~--~~~~~~~~~~~ 157 (273)
|... ++++|+++|++++.++.+.+. ....+.++.++|.++...|++++|+.+|++++++++... +......++..
T Consensus 95 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 174 (283)
T 3edt_B 95 YGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNN 174 (283)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 9888 999999999999999987633 467889999999999999999999999999999987652 23456788999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhccch------------------------------------------hhhchhhH
Q 024043 158 VAQYAAELEQYHKSIEIYEEIARQSLNNNL------------------------------------------LKYGVKGH 195 (273)
Q Consensus 158 ~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~------------------------------------------~~~~~~~~ 195 (273)
+|.++..+|++++|+.+|++++........ ........
T Consensus 175 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (283)
T 3edt_B 175 LASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTT 254 (283)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 999999999999999999999754222100 01223345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 024043 196 LLNAGICQLCKGDVVAITNALERY 219 (273)
Q Consensus 196 ~~~~gl~~l~~gd~~~A~~~~~~~ 219 (273)
+..+|.++...|++.+|...+++.
T Consensus 255 ~~~la~~~~~~g~~~~A~~~~~~a 278 (283)
T 3edt_B 255 LRSLGALYRRQGKLEAAHTLEDCA 278 (283)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 667788888899998888888775
No 11
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.81 E-value=2.2e-17 Score=145.26 Aligned_cols=220 Identities=14% Similarity=0.121 Sum_probs=186.3
Q ss_pred HhhHHHHHHHHHHhhc---------------cccCC-CCCHHHHHHHHHHH--------------------HHHHHHcCC
Q 024043 5 IARAEEFEKKAEKKLN---------------GWGLF-GSKYEDAADLFDKA--------------------ANSFKLAKS 48 (273)
Q Consensus 5 ~~~a~~l~~~Aek~~k---------------~~~~~-~~~~~~A~~~~~~a--------------------~~~~~~~~~ 48 (273)
.++|.+++.+|-+... +..++ .|++++|..+|.++ |.+|...|+
T Consensus 63 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 142 (406)
T 3sf4_A 63 YAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 142 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCC
Confidence 5677777777765532 10112 37888888877754 566777888
Q ss_pred --------------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCC
Q 024043 49 --------------------WDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGR 107 (273)
Q Consensus 49 --------------------~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~ 107 (273)
+++|+..|.++..+..+.++....+.++.++|.+|... ++++|+.++++++.+....++
T Consensus 143 ~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 222 (406)
T 3sf4_A 143 SFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD 222 (406)
T ss_dssp TCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999877 999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccch
Q 024043 108 LSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNL 187 (273)
Q Consensus 108 ~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~ 187 (273)
....+.++.++|.++...|++++|+.+|++|+++.+..+++.....++..+|.++...|++++|+.+|++++.......
T Consensus 223 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~- 301 (406)
T 3sf4_A 223 KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELN- 301 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-
T ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC-
Confidence 9999999999999999999999999999999999999888777789999999999999999999999999975433321
Q ss_pred hhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 024043 188 LKYGVKGHLLNAGICQLCKGDVVAITNALERYQDIAAS 225 (273)
Q Consensus 188 ~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~ll~a 225 (273)
........+..+|.++...|++.+|...+++...+...
T Consensus 302 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 339 (406)
T 3sf4_A 302 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 339 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 12334557778899999999999999999998765543
No 12
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.81 E-value=1.7e-17 Score=146.95 Aligned_cols=221 Identities=12% Similarity=0.093 Sum_probs=187.2
Q ss_pred HhhHHHHHHHHHHhhc---------------cccC-CCCCHHHHHHHHHHH--------------------HHHHHHcCC
Q 024043 5 IARAEEFEKKAEKKLN---------------GWGL-FGSKYEDAADLFDKA--------------------ANSFKLAKS 48 (273)
Q Consensus 5 ~~~a~~l~~~Aek~~k---------------~~~~-~~~~~~~A~~~~~~a--------------------~~~~~~~~~ 48 (273)
.++|.+++.+|-+... +..+ ..|++++|..+|.++ |.+|...|+
T Consensus 102 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 181 (411)
T 4a1s_A 102 YNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGK 181 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCc
Confidence 5677777777776642 0011 237888888887765 556777889
Q ss_pred -----------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhH
Q 024043 49 -----------------WDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSM 110 (273)
Q Consensus 49 -----------------~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~ 110 (273)
+++|+.+|.++..+....++....+.++..+|.+|... ++++|+.+|++++.+....++...
T Consensus 182 ~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 261 (411)
T 4a1s_A 182 HLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAA 261 (411)
T ss_dssp HHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred ccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHH
Confidence 99999999999999999999999999999999999887 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhh
Q 024043 111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKY 190 (273)
Q Consensus 111 ~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~ 190 (273)
.+.++.++|.++...|++++|+.+|++|+++....++......++..+|.++...|++++|+.+|++++....... ...
T Consensus 262 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~ 340 (411)
T 4a1s_A 262 ERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG-DRI 340 (411)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-CHH
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChH
Confidence 9999999999999999999999999999999998888777789999999999999999999999999975433221 123
Q ss_pred chhhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Q 024043 191 GVKGHLLNAGICQLCKGDVVAITNALERYQDIAASM 226 (273)
Q Consensus 191 ~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~ll~a~ 226 (273)
.....+..++.++...|++.+|...+++...+.+.+
T Consensus 341 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 376 (411)
T 4a1s_A 341 GEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXX 376 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhc
Confidence 345577888999999999999999999987665544
No 13
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.81 E-value=2.7e-17 Score=145.64 Aligned_cols=217 Identities=11% Similarity=0.124 Sum_probs=183.3
Q ss_pred hHhhHHHHHHHHHHhhcc-------------ccCCC-CCHHHHHHHHHHH--------------------HHHHHHcCCH
Q 024043 4 QIARAEEFEKKAEKKLNG-------------WGLFG-SKYEDAADLFDKA--------------------ANSFKLAKSW 49 (273)
Q Consensus 4 ~~~~a~~l~~~Aek~~k~-------------~~~~~-~~~~~A~~~~~~a--------------------~~~~~~~~~~ 49 (273)
..++|.+++.+|-+.-.+ ..++. +++++|..+|.++ |.+|...|++
T Consensus 63 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 142 (411)
T 4a1s_A 63 DCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRF 142 (411)
T ss_dssp CHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCH
Confidence 367888888888876431 01122 8888988887765 5567788999
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-C-----------------HHHHHHHHHHHHHHHHhcCChhHH
Q 024043 50 DKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-S-----------------SNEAISCLEQAVNMFCDIGRLSMA 111 (273)
Q Consensus 50 ~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~-----------------~~eA~~~~~~Al~~~~~~g~~~~~ 111 (273)
++|..+|.+++.+....++....+.++..+|.+|... + +++|+.++++++.+....++....
T Consensus 143 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~ 222 (411)
T 4a1s_A 143 DEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQ 222 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999999999999999999999877 8 999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhc
Q 024043 112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYG 191 (273)
Q Consensus 112 a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~ 191 (273)
+.++.++|.++...|++++|+.+|++|+++....++......++..+|.++..+|++++|+.+|++++....... ....
T Consensus 223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~ 301 (411)
T 4a1s_A 223 GRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELG-EREV 301 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTT-CHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC-CHHH
Confidence 999999999999999999999999999999998887777778999999999999999999999999975443321 1223
Q ss_pred hhhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 024043 192 VKGHLLNAGICQLCKGDVVAITNALERYQD 221 (273)
Q Consensus 192 ~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~ 221 (273)
....+..+|.++...|++.+|...+++...
T Consensus 302 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 331 (411)
T 4a1s_A 302 EAQSCYSLGNTYTLLHEFNTAIEYHNRHLA 331 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455677889999999999999999888653
No 14
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.81 E-value=3.9e-17 Score=139.19 Aligned_cols=218 Identities=12% Similarity=0.101 Sum_probs=175.6
Q ss_pred HhhHHHHHHHHHHhhccc-------------cCC-CCCHHHHHHHHHHH--------------------HHHHHHcCCHH
Q 024043 5 IARAEEFEKKAEKKLNGW-------------GLF-GSKYEDAADLFDKA--------------------ANSFKLAKSWD 50 (273)
Q Consensus 5 ~~~a~~l~~~Aek~~k~~-------------~~~-~~~~~~A~~~~~~a--------------------~~~~~~~~~~~ 50 (273)
.++|..++.+|-+.-.+. .++ .+++++|..+|.++ |.+|...|+++
T Consensus 21 ~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 100 (338)
T 3ro2_A 21 CRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFD 100 (338)
T ss_dssp HHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHH
Confidence 567778888777653210 111 36777777776653 56777889999
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-C--------------------HHHHHHHHHHHHHHHHhcCChh
Q 024043 51 KAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-S--------------------SNEAISCLEQAVNMFCDIGRLS 109 (273)
Q Consensus 51 ~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~--------------------~~eA~~~~~~Al~~~~~~g~~~ 109 (273)
+|..++.++..+..+.+++...+.++..+|.+|... + +++|+.++++++.+....++..
T Consensus 101 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~ 180 (338)
T 3ro2_A 101 EAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRA 180 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 999999999999999998888899999999999777 7 8999999999999999999989
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhh
Q 024043 110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLK 189 (273)
Q Consensus 110 ~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~ 189 (273)
..+.++..+|.++...|++++|+.++++++++.+..+++.....++..+|.++...|++++|+.+|++++......+ ..
T Consensus 181 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~ 259 (338)
T 3ro2_A 181 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK-DR 259 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT-CH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhc-ch
Confidence 99999999999999999999999999999999988877777778899999999999999999999999875433321 12
Q ss_pred hchhhHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 024043 190 YGVKGHLLNAGICQLCKGDVVAITNALERYQDIA 223 (273)
Q Consensus 190 ~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~ll 223 (273)
......+..+|.++...|++..|...+++...+.
T Consensus 260 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 293 (338)
T 3ro2_A 260 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 293 (338)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 2344566778888999999999998888876443
No 15
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.81 E-value=2.5e-17 Score=140.41 Aligned_cols=218 Identities=14% Similarity=0.125 Sum_probs=183.2
Q ss_pred HhhHHHHHHHHHHhhc--c-------------ccC-CCCCHHHHHHHHHHH--------------------HHHHHHcCC
Q 024043 5 IARAEEFEKKAEKKLN--G-------------WGL-FGSKYEDAADLFDKA--------------------ANSFKLAKS 48 (273)
Q Consensus 5 ~~~a~~l~~~Aek~~k--~-------------~~~-~~~~~~~A~~~~~~a--------------------~~~~~~~~~ 48 (273)
.++|.+++.+|-+..+ + ..+ ..+++++|...|.++ |.+|...|+
T Consensus 59 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 138 (338)
T 3ro2_A 59 YAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 138 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCc
Confidence 5677777777665532 0 011 237888888877764 556777888
Q ss_pred --------------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCC
Q 024043 49 --------------------WDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGR 107 (273)
Q Consensus 49 --------------------~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~ 107 (273)
+++|..++.++..+....++....+.++..+|.++... ++++|+.++++++.+....++
T Consensus 139 ~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 218 (338)
T 3ro2_A 139 SFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD 218 (338)
T ss_dssp TSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred ccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999877 999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccch
Q 024043 108 LSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNL 187 (273)
Q Consensus 108 ~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~ 187 (273)
....+.++..+|.++...|++++|+.++++++++....+++.....++..+|.++...|++++|+.+|++++.......
T Consensus 219 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~- 297 (338)
T 3ro2_A 219 KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK- 297 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC-
Confidence 9999999999999999999999999999999999999888778889999999999999999999999999975433221
Q ss_pred hhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 024043 188 LKYGVKGHLLNAGICQLCKGDVVAITNALERYQDIA 223 (273)
Q Consensus 188 ~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~ll 223 (273)
........+..++.++...|++.+|...+++...+.
T Consensus 298 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 298 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 123345567788999999999999999999876544
No 16
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.80 E-value=4.5e-17 Score=145.44 Aligned_cols=183 Identities=10% Similarity=0.009 Sum_probs=159.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHH
Q 024043 36 FDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARY 114 (273)
Q Consensus 36 ~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~ 114 (273)
+...|.+|...|+|++|.+++.++.......++......+...++.++... ++++|+.++++++.+....++....+++
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 456789999999999999999999999999988888888889999998777 9999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhh
Q 024043 115 YKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKG 194 (273)
Q Consensus 115 l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~ 194 (273)
+.++|.+|...|+|++|+.++++++......++......++...|.++..+|+|++|..+|+++.......+........
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 99999999999999999999999999999888877888999999999999999999999999997544333211222345
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHH
Q 024043 195 HLLNAGICQLCKGDVVAITNALER 218 (273)
Q Consensus 195 ~~~~~gl~~l~~gd~~~A~~~~~~ 218 (273)
.+...|.++...|++.+|...+.+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~ 241 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFE 241 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Confidence 666778899999999998776654
No 17
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.79 E-value=1.2e-16 Score=135.48 Aligned_cols=215 Identities=16% Similarity=0.174 Sum_probs=174.3
Q ss_pred HhhHHHHHHHHHHhhccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHH
Q 024043 5 IARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKL--ESKHEAAQAYVDAAHC 82 (273)
Q Consensus 5 ~~~a~~l~~~Aek~~k~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~aa~~~~~~~~~ 82 (273)
.++|.+++.++-+..... .+++...-...+...|.+|...|++++|..+|.+++.+..+. ++....+.++..+|.+
T Consensus 43 ~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~ 120 (311)
T 3nf1_A 43 YEVAVPLCKQALEDLEKT--SGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVL 120 (311)
T ss_dssp HHHHHHHHHHHHHHHHHH--HCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 456777777776665521 123445556677778999999999999999999999999877 6777888999999999
Q ss_pred Hhcc-CHHHHHHHHHHHHHHHHhc--CChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc--CCcccHHHHHHH
Q 024043 83 YKKT-SSNEAISCLEQAVNMFCDI--GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE--EVTTSANQCKQK 157 (273)
Q Consensus 83 ~~~~-~~~eA~~~~~~Al~~~~~~--g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~--~~~~~~~~~~~~ 157 (273)
|... ++++|+.+|++++.++... ++....+.++.++|.++...|++++|+.+|++++++++.. ++......++..
T Consensus 121 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 200 (311)
T 3nf1_A 121 YGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNN 200 (311)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 9888 9999999999999999887 7778889999999999999999999999999999998876 334566788999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhccch------------------------------------------hhhchhhH
Q 024043 158 VAQYAAELEQYHKSIEIYEEIARQSLNNNL------------------------------------------LKYGVKGH 195 (273)
Q Consensus 158 ~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~------------------------------------------~~~~~~~~ 195 (273)
+|.++..+|++++|+++|++++........ ........
T Consensus 201 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 280 (311)
T 3nf1_A 201 LASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTT 280 (311)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHH
Confidence 999999999999999999999754222100 01223456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 024043 196 LLNAGICQLCKGDVVAITNALERYQD 221 (273)
Q Consensus 196 ~~~~gl~~l~~gd~~~A~~~~~~~~~ 221 (273)
+..+|.++...|++++|...+++...
T Consensus 281 ~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 281 LKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77788899999999999988887643
No 18
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.79 E-value=7.5e-17 Score=123.18 Aligned_cols=155 Identities=11% Similarity=0.082 Sum_probs=145.7
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhc
Q 024043 27 SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI 105 (273)
Q Consensus 27 ~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~ 105 (273)
+|...-+..+...|.+|...|++++|+.++.++.++..+.+++...+.++..+|.++... ++++|+.++++++.++...
T Consensus 3 ~d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 82 (164)
T 3ro3_A 3 GSRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL 82 (164)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 466677788889999999999999999999999999999999999999999999999887 9999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 024043 106 GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQ 181 (273)
Q Consensus 106 g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~ 181 (273)
+++...+.++.++|.++...|++++|+.++++++++.+..+++.....++..+|.++...|++++|++++++++..
T Consensus 83 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 83 KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998887788899999999999999999999999998743
No 19
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.77 E-value=1.3e-16 Score=127.52 Aligned_cols=151 Identities=11% Similarity=0.068 Sum_probs=141.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcC-Ch
Q 024043 31 DAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIG-RL 108 (273)
Q Consensus 31 ~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g-~~ 108 (273)
.....+...|.++...|++++|..+|.++..+.++.+++...+.++.++|.+|... ++++|+.++++++.++...+ ++
T Consensus 24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 103 (203)
T 3gw4_A 24 TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDP 103 (203)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccH
Confidence 34556777899999999999999999999999999999999999999999999888 99999999999999999999 56
Q ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 024043 109 SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQ 181 (273)
Q Consensus 109 ~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~ 181 (273)
...+.++.++|.++...|++++|+.++++|+++.+..+++.....++..+|.++...|++++|+.++++++..
T Consensus 104 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 104 LAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999998888778888999999999999999999999999743
No 20
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.77 E-value=1.8e-16 Score=134.32 Aligned_cols=197 Identities=11% Similarity=0.069 Sum_probs=168.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHH
Q 024043 26 GSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLE--SKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMF 102 (273)
Q Consensus 26 ~~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~ 102 (273)
+++...-+..+...|.++...|++++|+.+|.++..+..+.+ +....+.++..+|.+|... ++++|+.+|++++.++
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 99 (311)
T 3nf1_A 20 GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR 99 (311)
T ss_dssp CTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 456677788888999999999999999999999999998776 6677889999999999887 9999999999999999
Q ss_pred Hhc--CChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc--CCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 024043 103 CDI--GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE--EVTTSANQCKQKVAQYAAELEQYHKSIEIYEEI 178 (273)
Q Consensus 103 ~~~--g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~--~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~ 178 (273)
... ++....+.++..+|.++...|++++|+.+|++++++++.. ++......++..+|.++...|++++|+++|+++
T Consensus 100 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 179 (311)
T 3nf1_A 100 EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRA 179 (311)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 887 7788899999999999999999999999999999999776 455666788999999999999999999999999
Q ss_pred HHHHhccc-hhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 024043 179 ARQSLNNN-LLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDI 222 (273)
Q Consensus 179 ~~~~~~~~-~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~l 222 (273)
+....... .........+..++.++...|++.+|...+++...+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 180 LEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR 224 (311)
T ss_dssp HHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 75422110 001233456778899999999999999999987644
No 21
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.75 E-value=8.2e-16 Score=122.77 Aligned_cols=192 Identities=14% Similarity=0.108 Sum_probs=152.6
Q ss_pred cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHh
Q 024043 46 AKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYES 124 (273)
Q Consensus 46 ~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~ 124 (273)
.|++++|...+... .+++...+.++..+|.++... ++++|+.++++++.++...++....+.++.++|.++..
T Consensus 5 ~g~~~~A~~~~~~~------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 78 (203)
T 3gw4_A 5 AHDYALAERQAQAL------LAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERM 78 (203)
T ss_dssp --CHHHHHHHHHHH------HTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHh------cCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 56666666633222 235556788999999999877 99999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHhccC-CcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHH
Q 024043 125 EHNIEQTIVFFEKAADMFQNEE-VTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQ 203 (273)
Q Consensus 125 ~g~~~~A~~~y~~Al~~~~~~~-~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~ 203 (273)
.|++++|+.++++|+++++..+ ++.....++..+|.++..+|++++|+.++++++....... ........+..+|.++
T Consensus 79 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~ 157 (203)
T 3gw4_A 79 AGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQAD-DQVAIACAFRGLGDLA 157 (203)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHH
Confidence 9999999999999999999888 4447788999999999999999999999999974432221 1233445667889999
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHHhhcCHhHHHHHHHhhhccCC
Q 024043 204 LCKGDVVAITNALERYQDIAASMDEEDIAKFTDVVKEFDSMTP 246 (273)
Q Consensus 204 l~~gd~~~A~~~~~~~~~ll~a~~~~d~~~~~~~~~~~~~~~~ 246 (273)
...|++.+|..++++...+.. ..++......+......+.+
T Consensus 158 ~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~~~~~~~~~~~~ 198 (203)
T 3gw4_A 158 QQEKNLLEAQQHWLRARDIFA--ELEDSEAVNELMTRLNGLEH 198 (203)
T ss_dssp HHTTCHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCC
T ss_pred HHCcCHHHHHHHHHHHHHHHH--HcCCHHHHHHHHhcccchhh
Confidence 999999999999999876654 34666655555555544444
No 22
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.75 E-value=1.7e-16 Score=135.35 Aligned_cols=193 Identities=12% Similarity=-0.018 Sum_probs=158.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHH
Q 024043 35 LFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAAR 113 (273)
Q Consensus 35 ~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~ 113 (273)
.+...+..+...|+|++|.+.+.++++......+.......+..+|.++... ++++|+.+|++|+.+.....+....+.
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3445577888899999999999999887554444445566677789998777 999999999999999888888888999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCccc-HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhch
Q 024043 114 YYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTS-ANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGV 192 (273)
Q Consensus 114 ~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~-~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~ 192 (273)
++.++|.+|...|++++|+.+|++|+++++....... ...++.++|.++..+|+|++|+++|++++....... ..+..
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~-~~~~~ 235 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN-SMALI 235 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-BCSSH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcC-cHHHH
Confidence 9999999999999999999999999999887654332 337899999999999999999999999975543221 12345
Q ss_pred hhHHHHHHHHHHhcCCHHHH-HHHHHHHHHHHHHHhh
Q 024043 193 KGHLLNAGICQLCKGDVVAI-TNALERYQDIAASMDE 228 (273)
Q Consensus 193 ~~~~~~~gl~~l~~gd~~~A-~~~~~~~~~ll~a~~~ 228 (273)
...++++|.++...|++++| ..++++...+.+.+..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~~ 272 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEM 272 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhCc
Confidence 66788999999999999999 8889988777665533
No 23
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.75 E-value=2.3e-16 Score=134.57 Aligned_cols=194 Identities=12% Similarity=0.004 Sum_probs=159.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHH
Q 024043 33 ADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMA 111 (273)
Q Consensus 33 ~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~ 111 (273)
...+......+...|++++|...+.++........+....+..+..+|.++... ++++|+.+|++|+.+....++....
T Consensus 75 ~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~ 154 (293)
T 3u3w_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHH
Confidence 344445567778899999999999999875432222333355667789999777 9999999999999988888888899
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc-CCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhh
Q 024043 112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE-EVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKY 190 (273)
Q Consensus 112 a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~-~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~ 190 (273)
+.++.++|.+|...|++++|+.+|++|+++++.. ++......++.++|.++..+|+|++|++++++++....... ..+
T Consensus 155 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~-~~~ 233 (293)
T 3u3w_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN-SMA 233 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-BCT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcC-cHH
Confidence 9999999999999999999999999999999887 55667778999999999999999999999999975543332 133
Q ss_pred chhhHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHh
Q 024043 191 GVKGHLLNAGICQLCKG-DVVAITNALERYQDIAASMD 227 (273)
Q Consensus 191 ~~~~~~~~~gl~~l~~g-d~~~A~~~~~~~~~ll~a~~ 227 (273)
.....++++|.++...| ++++|...+++...+.+...
T Consensus 234 ~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~~ 271 (293)
T 3u3w_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILE 271 (293)
T ss_dssp THHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 45678889999999999 56999999999887776543
No 24
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.74 E-value=5.3e-15 Score=121.87 Aligned_cols=200 Identities=10% Similarity=0.122 Sum_probs=145.4
Q ss_pred hhHHHHHHHHHHhhccccCCCCCHHHHHHHHHHH-------------HHHHHHcCCHHHHHHHHHHHHHHHHHcC-CHHH
Q 024043 6 ARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKA-------------ANSFKLAKSWDKAGATYVKLANCHLKLE-SKHE 71 (273)
Q Consensus 6 ~~a~~l~~~Aek~~k~~~~~~~~~~~A~~~~~~a-------------~~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~ 71 (273)
++|+.+...|.-.++ .++|++|..+|.++ |.++...|++++|+.+|.+++.+....+ +...
T Consensus 3 ~~a~~~~~~g~~~~~-----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 77 (258)
T 3uq3_A 3 SMADKEKAEGNKFYK-----ARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKV 77 (258)
T ss_dssp HHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred hHHHHHHHHHHHHHH-----hccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHH
Confidence 345555555555444 24667777666654 6678888889999999999888887664 5556
Q ss_pred HHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHH------hcC--------------ChhHHHHHHHHHHHHHHhcCCHHH
Q 024043 72 AAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFC------DIG--------------RLSMAARYYKEIAELYESEHNIEQ 130 (273)
Q Consensus 72 aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~------~~g--------------~~~~~a~~l~~lg~~~~~~g~~~~ 130 (273)
.+.++..+|.++... ++++|+.+|++++.+.. ..| .....+.++..+|.++...|++++
T Consensus 78 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (258)
T 3uq3_A 78 ISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPN 157 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHH
Confidence 678888888888777 88888888888887421 111 234456778888888888888888
Q ss_pred HHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHH
Q 024043 131 TIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVV 210 (273)
Q Consensus 131 A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~ 210 (273)
|+.+|++++++.+.. ..++..+|.++...|++++|+.+|++++...+.+ ...+..+|.++...|++.
T Consensus 158 A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-------~~~~~~l~~~~~~~g~~~ 224 (258)
T 3uq3_A 158 AVKAYTEMIKRAPED------ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF-------VRAYIRKATAQIAVKEYA 224 (258)
T ss_dssp HHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhcCccc------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHH-------HHHHHHHHHHHHHHhhHH
Confidence 888888888875432 3678888888888888888888888887644332 235677788888888888
Q ss_pred HHHHHHHHHHHHH
Q 024043 211 AITNALERYQDIA 223 (273)
Q Consensus 211 ~A~~~~~~~~~ll 223 (273)
.|...+++...+-
T Consensus 225 ~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 225 SALETLDAARTKD 237 (258)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC
Confidence 8888888775544
No 25
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.73 E-value=1.5e-15 Score=125.20 Aligned_cols=216 Identities=13% Similarity=0.157 Sum_probs=167.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcC-Chh
Q 024043 32 AADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIG-RLS 109 (273)
Q Consensus 32 A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g-~~~ 109 (273)
.++.+...|.++...|++++|+.+|.+++... .+ ..++..+|.++... ++++|+.++++++.+.+..+ +..
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~---~~----~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 76 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH---KD----ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK 76 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CC----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh---cc----HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH
Confidence 45677788999999999999999999999886 32 46888999999887 99999999999999998875 666
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC--------------------CcccHHHHHHHHHHHHHHhcCHH
Q 024043 110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEE--------------------VTTSANQCKQKVAQYAAELEQYH 169 (273)
Q Consensus 110 ~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~--------------------~~~~~~~~~~~~a~~~~~~g~y~ 169 (273)
..+.++..+|.++...|++++|+.+|++++.+..... .......++..+|.++...|+++
T Consensus 77 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (258)
T 3uq3_A 77 VISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWP 156 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHH
Confidence 6689999999999999999999999999999543210 22345678999999999999999
Q ss_pred HHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHHHH---------HHHHhhcCHhHHHHHHHh
Q 024043 170 KSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDI---------AASMDEEDIAKFTDVVKE 240 (273)
Q Consensus 170 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~l---------l~a~~~~d~~~~~~~~~~ 240 (273)
+|+.+|++++...+.+ ...+..+|.++...|++..|...+++...+ .-+........+.+++..
T Consensus 157 ~A~~~~~~a~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 157 NAVKAYTEMIKRAPED-------ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALET 229 (258)
T ss_dssp HHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCccc-------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999998655443 246778899999999999999999986511 001111112345556666
Q ss_pred hhccCCCc------hhHHHHHHHHHHh
Q 024043 241 FDSMTPLD------PWKTTLLLRVKEK 261 (273)
Q Consensus 241 ~~~~~~ld------~~~~~~l~~~~~~ 261 (273)
|..+..++ |....++..+.+.
T Consensus 230 ~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 230 LDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 66666666 6666666555543
No 26
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.73 E-value=4e-16 Score=133.05 Aligned_cols=148 Identities=12% Similarity=0.032 Sum_probs=135.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhc-CChhH
Q 024043 33 ADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI-GRLSM 110 (273)
Q Consensus 33 ~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~-g~~~~ 110 (273)
..++...|.++...+++++|+.+|.+++.+....+++...+.++.++|.+|... ++++|+.+|++|+.++... ++...
T Consensus 115 ~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 194 (293)
T 3u3w_A 115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEF 194 (293)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHH
T ss_pred HHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhH
Confidence 445555677888888999999999999998777778788899999999999888 9999999999999999988 78899
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHH
Q 024043 111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE-QYHKSIEIYEEIAR 180 (273)
Q Consensus 111 ~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g-~y~~A~~~~~~~~~ 180 (273)
.+.++.++|.+|..+|+|++|+.++++|+++.+..++....+.++..+|.++..+| .+++|+++|++++.
T Consensus 195 ~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 195 DVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998888888899999999999999 57999999999963
No 27
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.73 E-value=1.1e-15 Score=116.60 Aligned_cols=157 Identities=13% Similarity=0.099 Sum_probs=137.0
Q ss_pred cCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 024043 66 LESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQN 144 (273)
Q Consensus 66 ~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~ 144 (273)
.+++...+.++..+|.++... ++++|+.++++++.+....++....+.++..+|.++...|++++|+.++++|+++++.
T Consensus 2 ~~d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 81 (164)
T 3ro3_A 2 PGSRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 81 (164)
T ss_dssp --CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 578889999999999999877 9999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 024043 145 EEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDIA 223 (273)
Q Consensus 145 ~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~ll 223 (273)
.+++.....++..+|.++...|++++|++++++++....... ........+..++.++...|++..|...+++...+.
T Consensus 82 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 82 LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK-DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred hCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcc-chHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 888777788999999999999999999999999975432221 123345567788999999999999999999875543
No 28
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.72 E-value=2.4e-15 Score=125.27 Aligned_cols=218 Identities=12% Similarity=0.030 Sum_probs=157.9
Q ss_pred HcCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhc--CChhHHHHHHHHHH
Q 024043 45 LAKSWDKAGATYVKLANCHLKLE--SKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI--GRLSMAARYYKEIA 119 (273)
Q Consensus 45 ~~~~~~~A~~~~~~a~~~~~~~~--~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~--g~~~~~a~~l~~lg 119 (273)
..|++++|+..|.+|++++.+.. +....+.++..+|.+|... ++++|+.+|++++.+.... ++....+.++.++|
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 35666677777777777776543 4467788999999999887 9999999999999999887 77888999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHhccCC--cccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc-chhhhchhhHH
Q 024043 120 ELYESEHNIEQTIVFFEKAADMFQNEEV--TTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN-NLLKYGVKGHL 196 (273)
Q Consensus 120 ~~~~~~g~~~~A~~~y~~Al~~~~~~~~--~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~-~~~~~~~~~~~ 196 (273)
.++...|++++|+.+|++|+++++.... ......++..+|.++..+|++++|+.+|++++...... ..........+
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999999999999877532 35567889999999999999999999999997542110 00012344567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhh------------------------cCHhHHHHHHHhhhccCCCchhHH
Q 024043 197 LNAGICQLCKGDVVAITNALERYQDIAASMDE------------------------EDIAKFTDVVKEFDSMTPLDPWKT 252 (273)
Q Consensus 197 ~~~gl~~l~~gd~~~A~~~~~~~~~ll~a~~~------------------------~d~~~~~~~~~~~~~~~~ld~~~~ 252 (273)
..+|.++...|++.+|...+++...+...... .....+..+...+..+...+|...
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVN 252 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHH
Confidence 78899999999999999999987654332111 112234445555555555566666
Q ss_pred HHHHHHHHhc
Q 024043 253 TLLLRVKEKL 262 (273)
Q Consensus 253 ~~l~~~~~~~ 262 (273)
..+..+...+
T Consensus 253 ~~~~~la~~~ 262 (283)
T 3edt_B 253 TTLRSLGALY 262 (283)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555444
No 29
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.70 E-value=1.4e-15 Score=129.70 Aligned_cols=142 Identities=13% Similarity=0.035 Sum_probs=126.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhH-HHHHHH
Q 024043 39 AANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSM-AARYYK 116 (273)
Q Consensus 39 a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~-~a~~l~ 116 (273)
.|.++...|++++|+.+|.+++.+..+..++...+.++.++|.+|... ++++|+.+|++|+.++...++... .+.++.
T Consensus 121 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~ 200 (293)
T 2qfc_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHH
Confidence 456677889999999999999988877777777899999999999888 999999999999999988765444 448999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHH-HHHHHHHHH
Q 024043 117 EIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKS-IEIYEEIAR 180 (273)
Q Consensus 117 ~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A-~~~~~~~~~ 180 (273)
++|.+|..+|+|++|+.+|++|+++....++....+.++.++|.++..+|++++| ..+|++++.
T Consensus 201 nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 9999999999999999999999999987777777789999999999999999999 778999863
No 30
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.69 E-value=4.4e-14 Score=123.79 Aligned_cols=184 Identities=10% Similarity=-0.006 Sum_probs=147.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCCh--hH
Q 024043 34 DLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRL--SM 110 (273)
Q Consensus 34 ~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~--~~ 110 (273)
..+...|.++...|++++|...+.++..+....+++...+.++..+|.++... ++++|+.++++++.+....++. ..
T Consensus 54 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~ 133 (373)
T 1hz4_A 54 VATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPM 133 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcH
Confidence 34455678889999999999999999999999999999999999999999877 9999999999999999998876 67
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhh
Q 024043 111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKY 190 (273)
Q Consensus 111 ~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~ 190 (273)
.+.++.++|.++...|++++|..++++++++.+..+.+. ...++..+|.++...|++++|..+++++............
T Consensus 134 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~ 212 (373)
T 1hz4_A 134 HEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ-QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSD 212 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG-GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchh
Confidence 888999999999999999999999999999998877654 4578899999999999999999999998644222110000
Q ss_pred chhhHHHHHHHHHHhcCCHHHHHHHHHH
Q 024043 191 GVKGHLLNAGICQLCKGDVVAITNALER 218 (273)
Q Consensus 191 ~~~~~~~~~gl~~l~~gd~~~A~~~~~~ 218 (273)
.........+.+++..|++..|...+++
T Consensus 213 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 240 (373)
T 1hz4_A 213 WISNANKVRVIYWQMTGDKAAAANWLRH 240 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 0000001122335567777777666554
No 31
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.68 E-value=1.3e-15 Score=124.44 Aligned_cols=166 Identities=14% Similarity=0.124 Sum_probs=115.9
Q ss_pred CCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh-c------
Q 024043 27 SKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYK-K------ 85 (273)
Q Consensus 27 ~~~~~A~~~~~~a--------------~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~-~------ 85 (273)
|++++|...|.++ |.++...|++++|+.+|.+++++... -..++..+|.++. .
T Consensus 19 g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~------~~~a~~~lg~~~~~~~~~~~~ 92 (217)
T 2pl2_A 19 GRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR------YLGGYMVLSEAYVALYRQAED 92 (217)
T ss_dssp TCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHhhhhhhh
Confidence 4666666666654 67888889999999999998887422 2345667777763 3
Q ss_pred -----cCHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHH
Q 024043 86 -----TSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQ 160 (273)
Q Consensus 86 -----~~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~ 160 (273)
.++++|+.+|++++.+.+.. +.++.++|.++...|++++|+.+|++|+++. ++ ..++..+|.
T Consensus 93 ~~~~~g~~~~A~~~~~~al~~~P~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---~~----~~~~~~la~ 159 (217)
T 2pl2_A 93 RERGKGYLEQALSVLKDAERVNPRY------APLHLQRGLVYALLGERDKAEASLKQALALE---DT----PEIRSALAE 159 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CC----HHHHHHHHH
T ss_pred hcccccCHHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcc---cc----hHHHHHHHH
Confidence 47888999999998875432 3578889999999999999999999999886 11 356888999
Q ss_pred HHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHH
Q 024043 161 YAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALER 218 (273)
Q Consensus 161 ~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~ 218 (273)
++..+|++++|+..|++++...++++ ..+.+++.++...|++++|...+++
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~~P~~~-------~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQAPKDL-------DLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTCH-------HHHHHHHHHHTC-------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCh-------HHHHHHHHHHHHccCHHHHHHHHHH
Confidence 99999999999999999887655542 3566778888888988888877765
No 32
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.68 E-value=3.4e-15 Score=117.86 Aligned_cols=164 Identities=14% Similarity=0.118 Sum_probs=140.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhH
Q 024043 32 AADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSM 110 (273)
Q Consensus 32 A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~ 110 (273)
-...|...|.+|...|++++|+.+|++++++... -..++..+|.+|... ++++|+.++.+++......
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~----- 72 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN------NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS----- 72 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC-----
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchh-----
Confidence 3567889999999999999999999999988432 246788999999888 9999999999998765433
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhh
Q 024043 111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKY 190 (273)
Q Consensus 111 ~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~ 190 (273)
..++..+|.++...++++.|+..+.+|+.+.+.. ..++..+|.++..+|+|++|++.|++++...+.+
T Consensus 73 -~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~------~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~----- 140 (184)
T 3vtx_A 73 -AEAYYILGSANFMIDEKQAAIDALQRAIALNTVY------ADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGF----- 140 (184)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc------hHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchh-----
Confidence 4578899999999999999999999999886432 3678899999999999999999999998765543
Q ss_pred chhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043 191 GVKGHLLNAGICQLCKGDVVAITNALERYQ 220 (273)
Q Consensus 191 ~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~ 220 (273)
...+.++|.++...|++++|..++++..
T Consensus 141 --~~~~~~lg~~~~~~g~~~~A~~~~~~al 168 (184)
T 3vtx_A 141 --IRAYQSIGLAYEGKGLRDEAVKYFKKAL 168 (184)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred --hhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 2467889999999999999999998863
No 33
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.67 E-value=1.5e-15 Score=144.92 Aligned_cols=166 Identities=14% Similarity=0.168 Sum_probs=143.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHH
Q 024043 33 ADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMA 111 (273)
Q Consensus 33 ~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~ 111 (273)
++.+...|.+|...|++++|+.+|++|+++... -+.++.++|.+|... ++++|+.+|++|+++....
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~------~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~------ 76 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPE------FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF------ 76 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------
Confidence 456778899999999999999999999988532 256899999999888 9999999999999986443
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhc
Q 024043 112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYG 191 (273)
Q Consensus 112 a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~ 191 (273)
+.++.++|.++..+|++++|+++|++|+++... ...++.++|.++..+|++++|++.|++++...+++
T Consensus 77 ~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~------~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~------ 144 (723)
T 4gyw_A 77 ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA------FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF------ 144 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------
Confidence 568999999999999999999999999998542 24789999999999999999999999998765554
Q ss_pred hhhHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 024043 192 VKGHLLNAGICQLCKGDVVAITNALERYQDIA 223 (273)
Q Consensus 192 ~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~ll 223 (273)
...+.++|.++...|++.+|.+.+++...+.
T Consensus 145 -~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~ 175 (723)
T 4gyw_A 145 -PDAYCNLAHCLQIVCDWTDYDERMKKLVSIV 175 (723)
T ss_dssp -HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred -hHHHhhhhhHHHhcccHHHHHHHHHHHHHhC
Confidence 3467889999999999999999999876544
No 34
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.66 E-value=2.7e-15 Score=130.88 Aligned_cols=177 Identities=9% Similarity=0.020 Sum_probs=100.7
Q ss_pred CCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHH
Q 024043 27 SKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEA 91 (273)
Q Consensus 27 ~~~~~A~~~~~~a--------------~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA 91 (273)
+++++|..+|.++ |.+|...|++++|+.+|.+++.+... ...++..+|.+|... ++++|
T Consensus 79 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~A 152 (365)
T 4eqf_A 79 GDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN------NLKALMALAVSYTNTSHQQDA 152 (365)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHccccHHHH
Confidence 4666666666654 56677777888888888877766321 145677777777666 77777
Q ss_pred HHHHHHHHHHHHhcCChh----HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcC
Q 024043 92 ISCLEQAVNMFCDIGRLS----MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQ 167 (273)
Q Consensus 92 ~~~~~~Al~~~~~~g~~~----~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~ 167 (273)
+.+|++++.+.+...... +.+..+..+|.++...|++++|+.+|++++++.+... ...++..+|.++...|+
T Consensus 153 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~~~l~~~~~~~g~ 228 (365)
T 4eqf_A 153 CEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMI----DPDLQTGLGVLFHLSGE 228 (365)
T ss_dssp HHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSC----CHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCcc----CHHHHHHHHHHHHHCCC
Confidence 777777777665543322 2234445556666666666666666666666543211 13456666666666666
Q ss_pred HHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043 168 YHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ 220 (273)
Q Consensus 168 y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~ 220 (273)
+++|+.+|++++...+.+ ...+.++|.++...|++.+|...+++..
T Consensus 229 ~~~A~~~~~~al~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al 274 (365)
T 4eqf_A 229 FNRAIDAFNAALTVRPED-------YSLWNRLGATLANGDRSEEAVEAYTRAL 274 (365)
T ss_dssp HHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 666666666665443332 1245556666666666666666666543
No 35
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.64 E-value=9.3e-14 Score=121.68 Aligned_cols=186 Identities=11% Similarity=-0.035 Sum_probs=157.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhH
Q 024043 32 AADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSM 110 (273)
Q Consensus 32 A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~ 110 (273)
..+.....|.++...|++++|...+.+++... ..+++...+.++..+|.++... ++++|+.++++++.+.+..|++..
T Consensus 13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 91 (373)
T 1hz4_A 13 HAEFNALRAQVAINDGNPDEAERLAKLALEEL-PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY 91 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHH
Confidence 34555566888889999999999999999876 3445666778889999999766 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCc--ccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchh
Q 024043 111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVT--TSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLL 188 (273)
Q Consensus 111 ~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~--~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~ 188 (273)
.+.++.++|.++...|++++|+.+|++++++.+..+.+ .....++..+|.++...|++++|..++++++........
T Consensus 92 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~- 170 (373)
T 1hz4_A 92 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP- 170 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG-
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCc-
Confidence 99999999999999999999999999999999987664 456678899999999999999999999999765443211
Q ss_pred hhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043 189 KYGVKGHLLNAGICQLCKGDVVAITNALERYQ 220 (273)
Q Consensus 189 ~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~ 220 (273)
.. ....+..++.++...|++.+|...+++..
T Consensus 171 ~~-~~~~~~~la~~~~~~g~~~~A~~~l~~a~ 201 (373)
T 1hz4_A 171 QQ-QLQCLAMLIQCSLARGDLDNARSQLNRLE 201 (373)
T ss_dssp GG-GHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 11 23456778899999999999999888764
No 36
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.64 E-value=1.1e-14 Score=127.02 Aligned_cols=201 Identities=11% Similarity=0.050 Sum_probs=152.1
Q ss_pred HhhHHHHHHHHHHhhcc----c-----cCCC-CCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHH
Q 024043 5 IARAEEFEKKAEKKLNG----W-----GLFG-SKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLA 60 (273)
Q Consensus 5 ~~~a~~l~~~Aek~~k~----~-----~~~~-~~~~~A~~~~~~a--------------~~~~~~~~~~~~A~~~~~~a~ 60 (273)
.++|.++++++-+.-.. + .++. +++++|..+|.++ |.+|...|++++|+.+|.+++
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 160 (365)
T 4eqf_A 81 LPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWI 160 (365)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHH
Confidence 56788888888765431 1 1223 8999999999876 678999999999999999999
Q ss_pred HHHHHcCCHH----HHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 024043 61 NCHLKLESKH----EAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFF 135 (273)
Q Consensus 61 ~~~~~~~~~~----~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y 135 (273)
.+........ +.+..+..+|.++... ++++|+.+|++++.+.....+ +.++.++|.++...|++++|+.+|
T Consensus 161 ~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~~~l~~~~~~~g~~~~A~~~~ 236 (365)
T 4eqf_A 161 KQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMID----PDLQTGLGVLFHLSGEFNRAIDAF 236 (365)
T ss_dssp HHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCC----HHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccC----HHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9876433221 3456667789999888 999999999999998654322 458899999999999999999999
Q ss_pred HHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHH
Q 024043 136 EKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNA 215 (273)
Q Consensus 136 ~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~ 215 (273)
++++++.+.. ..++..+|.++...|++++|+.+|++++...+++ ...+.++|.++...|++.+|...
T Consensus 237 ~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~ 303 (365)
T 4eqf_A 237 NAALTVRPED------YSLWNRLGATLANGDRSEEAVEAYTRALEIQPGF-------IRSRYNLGISCINLGAYREAVSN 303 (365)
T ss_dssp HHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-------hHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999986432 4689999999999999999999999998664443 34678889999999999999999
Q ss_pred HHHHHHH
Q 024043 216 LERYQDI 222 (273)
Q Consensus 216 ~~~~~~l 222 (273)
+++...+
T Consensus 304 ~~~al~~ 310 (365)
T 4eqf_A 304 FLTALSL 310 (365)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9987644
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.64 E-value=7.9e-15 Score=119.71 Aligned_cols=160 Identities=12% Similarity=-0.018 Sum_probs=136.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHH
Q 024043 35 LFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAAR 113 (273)
Q Consensus 35 ~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~ 113 (273)
.+...|.++...|++++|+..|.+++..... -..++..+|.++... ++++|+.+|++++.+.+.. +.
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~------~~ 74 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFERALKENPQ------DPEALYWLARTQLKLGLVNPALENGKTLVARTPRY------LG 74 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HH
Confidence 4556799999999999999999999876422 246788999999877 9999999999999986543 45
Q ss_pred HHHHHHHHHHhc-----------CCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 024043 114 YYKEIAELYESE-----------HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQS 182 (273)
Q Consensus 114 ~l~~lg~~~~~~-----------g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~ 182 (273)
++.++|.++... |++++|+..|++|+++.+. ...++..+|.++..+|++++|+..|++++...
T Consensus 75 a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 148 (217)
T 2pl2_A 75 GYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR------YAPLHLQRGLVYALLGERDKAEASLKQALALE 148 (217)
T ss_dssp HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc
Confidence 889999999999 9999999999999998543 24678999999999999999999999998655
Q ss_pred hccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043 183 LNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ 220 (273)
Q Consensus 183 ~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~ 220 (273)
++ ...++++|.++...|++++|...+++..
T Consensus 149 -~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al 178 (217)
T 2pl2_A 149 -DT-------PEIRSALAELYLSMGRLDEALAQYAKAL 178 (217)
T ss_dssp -CC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred -cc-------hHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33 2467889999999999999999999865
No 38
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.63 E-value=5.7e-14 Score=119.84 Aligned_cols=240 Identities=11% Similarity=0.030 Sum_probs=177.5
Q ss_pred HhhHHHHHHHHHHhhc-cc--------cCCC-CCHHHHHHHHHHH--------------HHHHHHcC-CHHHHHHHHHHH
Q 024043 5 IARAEEFEKKAEKKLN-GW--------GLFG-SKYEDAADLFDKA--------------ANSFKLAK-SWDKAGATYVKL 59 (273)
Q Consensus 5 ~~~a~~l~~~Aek~~k-~~--------~~~~-~~~~~A~~~~~~a--------------~~~~~~~~-~~~~A~~~~~~a 59 (273)
.++|.+++.++-+.-. .. .++. +++++|..++.++ |.++...| ++++|+.+|.++
T Consensus 38 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a 117 (330)
T 3hym_B 38 FKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKA 117 (330)
T ss_dssp HHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 5677777777765443 11 0123 7888888888765 56778888 899999999998
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 024043 60 ANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKA 138 (273)
Q Consensus 60 ~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~A 138 (273)
+.+.... ..++..+|.++... ++++|+.+|++++.+..... ..+..+|.++...|++++|+.+|+++
T Consensus 118 ~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~a 185 (330)
T 3hym_B 118 TTLEKTY------GPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCH------LPMLYIGLEYGLTNNSKLAERFFSQA 185 (330)
T ss_dssp HTTCTTC------THHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCS------HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhCCcc------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccH------HHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 8764322 34678889998777 99999999999998876543 36777999999999999999999999
Q ss_pred HHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccc--hhhhchhhHHHHHHHHHHhcCCHHHHHHHH
Q 024043 139 ADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNN--LLKYGVKGHLLNAGICQLCKGDVVAITNAL 216 (273)
Q Consensus 139 l~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~--~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~ 216 (273)
+++.+.. ..++..+|.++...|++++|+.+|++++....... .........+..+|.++...|+++.|...+
T Consensus 186 l~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 259 (330)
T 3hym_B 186 LSIAPED------PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYH 259 (330)
T ss_dssp HTTCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhCCCC------hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9886432 46789999999999999999999999986543211 111122357788999999999999999999
Q ss_pred HHHHHH-------H--HHHhhcCHhHHHHHHHhhhccCCCchhHHHHHHHHHHhc
Q 024043 217 ERYQDI-------A--ASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKL 262 (273)
Q Consensus 217 ~~~~~l-------l--~a~~~~d~~~~~~~~~~~~~~~~ld~~~~~~l~~~~~~~ 262 (273)
++...+ . -+........+.+++..|..+..++|-....+..+...+
T Consensus 260 ~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 260 RQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHH
T ss_pred HHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHH
Confidence 986511 0 011112244577888888888888887776666666655
No 39
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.62 E-value=2.6e-14 Score=125.84 Aligned_cols=237 Identities=15% Similarity=0.170 Sum_probs=131.5
Q ss_pred HhhHHHHHHHHHHhhccc---------cCCC-CCHHHHHHHHHH--------------HHHHHHHcCCHHHHHHHHHHHH
Q 024043 5 IARAEEFEKKAEKKLNGW---------GLFG-SKYEDAADLFDK--------------AANSFKLAKSWDKAGATYVKLA 60 (273)
Q Consensus 5 ~~~a~~l~~~Aek~~k~~---------~~~~-~~~~~A~~~~~~--------------a~~~~~~~~~~~~A~~~~~~a~ 60 (273)
.++|.+++++|-+.-... .++. |++++|...|.+ .|.++...|++++|..+|.+++
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 456666666665532210 1122 666777666654 3667777777777777777766
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhc--------------CChhH--------------H
Q 024043 61 NCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI--------------GRLSM--------------A 111 (273)
Q Consensus 61 ~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~--------------g~~~~--------------~ 111 (273)
.... ..+.++.++|.++... ++++|+.+|++++.+.+.. |++.. .
T Consensus 163 ~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 236 (388)
T 1w3b_A 163 ETQP------NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH 236 (388)
T ss_dssp HHCT------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTC
T ss_pred HhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCC
Confidence 5421 1123444555555444 5555555555554432111 11111 1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhc
Q 024043 112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYG 191 (273)
Q Consensus 112 a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~ 191 (273)
..++.++|.++...|++++|+.+|++++++.+. ...++..+|.++...|++++|+++|++++...+.+
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------ 304 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH------FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH------ 304 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS------CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTC------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc------
Confidence 345566666666667777777777766665321 12456667777777777777777777776543332
Q ss_pred hhhHHHHHHHHHHhcCCHHHHHHHHHHHH-----------HHHHHHhhcCHhHHHHHHHhhhccCCCchhHHHHHHHHHH
Q 024043 192 VKGHLLNAGICQLCKGDVVAITNALERYQ-----------DIAASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKE 260 (273)
Q Consensus 192 ~~~~~~~~gl~~l~~gd~~~A~~~~~~~~-----------~ll~a~~~~d~~~~~~~~~~~~~~~~ld~~~~~~l~~~~~ 260 (273)
...+..++.++...|++++|...+++.. .+...+ .....+.+++..|..+..++|.....+..+..
T Consensus 305 -~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~--~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~ 381 (388)
T 1w3b_A 305 -ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVL--QQQGKLQEALMHYKEAIRISPTFADAYSNMGN 381 (388)
T ss_dssp -HHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH--HTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH--HHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHH
Confidence 2345566667777777777777766643 111111 12334556666666666677766666665554
Q ss_pred hc
Q 024043 261 KL 262 (273)
Q Consensus 261 ~~ 262 (273)
.+
T Consensus 382 ~~ 383 (388)
T 1w3b_A 382 TL 383 (388)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 40
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.61 E-value=8.9e-15 Score=122.02 Aligned_cols=211 Identities=14% Similarity=0.101 Sum_probs=149.0
Q ss_pred CCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHH
Q 024043 27 SKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEA 91 (273)
Q Consensus 27 ~~~~~A~~~~~~a--------------~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA 91 (273)
+++++|...|.++ |.+|...|++++|+.+|.+++.. .+++...+.++..+|.++... ++++|
T Consensus 17 ~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~lg~~~~~~~~~~~A 93 (272)
T 3u4t_A 17 NNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK---VNATKAKSADFEYYGKILMKKGQDSLA 93 (272)
T ss_dssp TCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT---SCTTTCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---cCchhHHHHHHHHHHHHHHHcccHHHH
Confidence 4667777766654 67888999999999999999872 244444577788999999877 99999
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHH
Q 024043 92 ISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKS 171 (273)
Q Consensus 92 ~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A 171 (273)
+.+|++++.+..... .++..+|.++...|++++|+.+|++++++.+ ....++..+|......+++++|
T Consensus 94 ~~~~~~a~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 94 IQQYQAAVDRDTTRL------DMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT------TDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHHHHHHHHSTTCT------HHHHHHHHHHHHTTCHHHHHHHHGGGCCSSC------CCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhcCcccH------HHHHHHHHHHHHccCHHHHHHHHHHHhhcCC------CcHHHHHHHHHHHHHHHHHHHH
Confidence 999999998765443 4889999999999999999999999988722 2246788889444445599999
Q ss_pred HHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHHh-----------------hcCH
Q 024043 172 IEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGD---VVAITNALERYQDIAASMD-----------------EEDI 231 (273)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd---~~~A~~~~~~~~~ll~a~~-----------------~~d~ 231 (273)
+++|++++...+.+ ...+..+|.++...|+ +..|...+++...+..... ....
T Consensus 162 ~~~~~~a~~~~p~~-------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 234 (272)
T 3u4t_A 162 DSSFVKVLELKPNI-------YIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTIN 234 (272)
T ss_dssp HHHHHHHHHHSTTC-------HHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCccc-------hHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHc
Confidence 99999998655443 2345667777777777 6667777776554331110 0112
Q ss_pred hHHHHHHHhhhccCCCchhHHHHHHHHH
Q 024043 232 AKFTDVVKEFDSMTPLDPWKTTLLLRVK 259 (273)
Q Consensus 232 ~~~~~~~~~~~~~~~ld~~~~~~l~~~~ 259 (273)
..+.+++..|..+..+||-.......+.
T Consensus 235 ~~~~~A~~~~~~al~~~p~~~~a~~~l~ 262 (272)
T 3u4t_A 235 RDKVKADAAWKNILALDPTNKKAIDGLK 262 (272)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHC
T ss_pred CCHHHHHHHHHHHHhcCccHHHHHHHhh
Confidence 3456666666666666666554444433
No 41
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.61 E-value=4.3e-14 Score=124.40 Aligned_cols=238 Identities=15% Similarity=0.125 Sum_probs=157.3
Q ss_pred HhhHHHHHHHHHHhhcc----c-----cCCC-CCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHH
Q 024043 5 IARAEEFEKKAEKKLNG----W-----GLFG-SKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLA 60 (273)
Q Consensus 5 ~~~a~~l~~~Aek~~k~----~-----~~~~-~~~~~A~~~~~~a--------------~~~~~~~~~~~~A~~~~~~a~ 60 (273)
.++|..++.++-+.-.. + .++. |++++|..+|.++ |.++...|++++|+..|.+++
T Consensus 49 ~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 128 (388)
T 1w3b_A 49 LDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSAL 128 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45666666666554321 1 1223 8999999888764 889999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043 61 NCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAA 139 (273)
Q Consensus 61 ~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al 139 (273)
.+... ....+..+|.++... ++++|+++|++++...+. .+.++.++|.++...|++++|+.+|++|+
T Consensus 129 ~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al 196 (388)
T 1w3b_A 129 QYNPD------LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN------FAVAWSNLGCVFNAQGEIWLAIHHFEKAV 196 (388)
T ss_dssp HHCTT------CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HhCCC------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 87432 245677899999887 999999999999886432 23466677777777777777777777766
Q ss_pred HHHhcc--------------CC--------------cccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhc
Q 024043 140 DMFQNE--------------EV--------------TTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYG 191 (273)
Q Consensus 140 ~~~~~~--------------~~--------------~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~ 191 (273)
.+.+.. ++ .+....++..+|.++...|++++|++.|++++...+..
T Consensus 197 ~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------ 270 (388)
T 1w3b_A 197 TLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF------ 270 (388)
T ss_dssp HHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC------
T ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------
Confidence 553211 00 01113456677777777777777777777776543332
Q ss_pred hhhHHHHHHHHHHhcCCHHHHHHHHHHHHHH-------HH--HHhhcCHhHHHHHHHhhhccCCCchhHHHHHHHHHHh
Q 024043 192 VKGHLLNAGICQLCKGDVVAITNALERYQDI-------AA--SMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEK 261 (273)
Q Consensus 192 ~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~l-------l~--a~~~~d~~~~~~~~~~~~~~~~ld~~~~~~l~~~~~~ 261 (273)
...+..+|.++...|++++|...+++...+ +. +.-......+.+++..|..+..++|.....+..+...
T Consensus 271 -~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 348 (388)
T 1w3b_A 271 -PDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASV 348 (388)
T ss_dssp -HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 234667778888888888888888775411 00 1111223456677777887777777666555555443
No 42
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.61 E-value=3.6e-15 Score=121.94 Aligned_cols=207 Identities=16% Similarity=0.158 Sum_probs=147.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHH
Q 024043 34 DLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAA 112 (273)
Q Consensus 34 ~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a 112 (273)
+.+...|.++...|++++|+.+|.+++.+... .+. .++..+|.++... ++++|+.+|++++.+... -.
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~----~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~ 76 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNN-QDS----VTAYNCGVCADNIKKYKEAADYFDIAIKKNYN------LA 76 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT-CCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS------HH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCC-CCc----HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc------hH
Confidence 45667799999999999999999999988531 122 4666699999887 999999999999975432 46
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCC-cccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhc
Q 024043 113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEV-TTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYG 191 (273)
Q Consensus 113 ~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~-~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~ 191 (273)
.++..+|.++..+|++++|+.+|++++++.+.... ......++..+|.++..+|++++|++.|++++...+.+ +
T Consensus 77 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~- 151 (228)
T 4i17_A 77 NAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKK----W- 151 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHH----H-
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCc----c-
Confidence 68999999999999999999999999999875432 12344789999999999999999999999997543320 0
Q ss_pred hhhHHHHHHHHHHhcCCH--HHHHHH----HHHHHHHHHHHhhcCHhHHHHHHHhhhccCCCchhHH---HHHHHHHH
Q 024043 192 VKGHLLNAGICQLCKGDV--VAITNA----LERYQDIAASMDEEDIAKFTDVVKEFDSMTPLDPWKT---TLLLRVKE 260 (273)
Q Consensus 192 ~~~~~~~~gl~~l~~gd~--~~A~~~----~~~~~~ll~a~~~~d~~~~~~~~~~~~~~~~ld~~~~---~~l~~~~~ 260 (273)
....+.++|.++...|+. ..+... ...|.... ..-.+.+.+++..|.....++|-.. .+|..|+.
T Consensus 152 ~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 152 KTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEK----AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH----HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 234677888888777654 111111 11122111 1123346677777776666666554 44444443
No 43
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.59 E-value=3.4e-13 Score=111.21 Aligned_cols=171 Identities=11% Similarity=0.090 Sum_probs=138.9
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhc
Q 024043 27 SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI 105 (273)
Q Consensus 27 ~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~ 105 (273)
.+.......+...|.++...|++++|+.+|.++...... ...++..+|.++... ++++|+++|++++.+....
T Consensus 31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 104 (252)
T 2ho1_A 31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS------SADAHAALAVVFQTEMEPKLADEEYRKALASDSRN 104 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc
Confidence 456666778888899999999999999999999877421 246788889999777 9999999999999875432
Q ss_pred CChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043 106 GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN 185 (273)
Q Consensus 106 g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~ 185 (273)
..++..+|.++...|++++|+.+|++++. .+.......++..+|.++...|++++|+.+|++++...+.+
T Consensus 105 ------~~~~~~la~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 174 (252)
T 2ho1_A 105 ------ARVLNNYGGFLYEQKRYEEAYQRLLEASQ----DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQ 174 (252)
T ss_dssp ------HHHHHHHHHHHHHTTCHHHHHHHHHHHTT----CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC
T ss_pred ------HHHHHHHHHHHHHHhHHHHHHHHHHHHHh----CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccc
Confidence 46889999999999999999999999987 22223456788999999999999999999999997654432
Q ss_pred chhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043 186 NLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ 220 (273)
Q Consensus 186 ~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~ 220 (273)
...+..++.++...|++..|...+++..
T Consensus 175 -------~~~~~~la~~~~~~g~~~~A~~~~~~~~ 202 (252)
T 2ho1_A 175 -------PSVALEMADLLYKEREYVPARQYYDLFA 202 (252)
T ss_dssp -------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2356778889999999999999988864
No 44
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.59 E-value=7.5e-13 Score=106.55 Aligned_cols=166 Identities=12% Similarity=0.134 Sum_probs=132.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhH
Q 024043 32 AADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSM 110 (273)
Q Consensus 32 A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~ 110 (273)
-...+...|.++...|++++|+.+|.++....... ..++..+|.++... ++++|+++|++++.+....
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----- 75 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKN------ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDS----- 75 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccc------hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-----
Confidence 34566677899999999999999999998864321 45778889988777 9999999999998875432
Q ss_pred HHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhh
Q 024043 111 AARYYKEIAELYESE-HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLK 189 (273)
Q Consensus 111 ~a~~l~~lg~~~~~~-g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~ 189 (273)
..++..+|.++... |++++|+.+|+++++ .+.......++..+|.++...|++++|+.+|++++...+.+
T Consensus 76 -~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---- 146 (225)
T 2vq2_A 76 -AEINNNYGWFLCGRLNRPAESMAYFDKALA----DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQF---- 146 (225)
T ss_dssp -HHHHHHHHHHHHTTTCCHHHHHHHHHHHHT----STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----
T ss_pred -hHHHHHHHHHHHHhcCcHHHHHHHHHHHHc----CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----
Confidence 45788999999999 999999999999988 22223445788999999999999999999999987654433
Q ss_pred hchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043 190 YGVKGHLLNAGICQLCKGDVVAITNALERYQ 220 (273)
Q Consensus 190 ~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~ 220 (273)
...+..++.++...|++..|...+++..
T Consensus 147 ---~~~~~~la~~~~~~~~~~~A~~~~~~~~ 174 (225)
T 2vq2_A 147 ---PPAFKELARTKMLAGQLGDADYYFKKYQ 174 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred ---chHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2356778888999999999998888764
No 45
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.59 E-value=4.5e-14 Score=122.77 Aligned_cols=164 Identities=10% Similarity=-0.006 Sum_probs=119.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHH
Q 024043 38 KAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYK 116 (273)
Q Consensus 38 ~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~ 116 (273)
..|.++...|++++|+.+|.+++..... ...++..+|.++... ++++|+.+|++++.+.+.. ..++.
T Consensus 69 ~~~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~ 136 (368)
T 1fch_A 69 EEGLRRLQEGDLPNAVLLFEAAVQQDPK------HMEAWQYLGTTQAENEQELLAISALRRCLELKPDN------QTALM 136 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCC------HHHHH
Confidence 4577888888888888888888765321 245677788888766 8888888888888765332 44777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhccCCccc---------------------------------------------H
Q 024043 117 EIAELYESEHNIEQTIVFFEKAADMFQNEEVTTS---------------------------------------------A 151 (273)
Q Consensus 117 ~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~---------------------------------------------~ 151 (273)
.+|.++...|++++|+.+|++++.+.+....... .
T Consensus 137 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 216 (368)
T 1fch_A 137 ALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSID 216 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCccc
Confidence 7888888888888888888877766544322111 2
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043 152 NQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ 220 (273)
Q Consensus 152 ~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~ 220 (273)
..++..+|.++...|++++|+.+|++++...+.+ ...+..+|.++...|++..|...+++..
T Consensus 217 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al 278 (368)
T 1fch_A 217 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND-------YLLWNKLGATLANGNQSEEAVAAYRRAL 278 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4677888888889999999999998887654433 2356778888888899888888888754
No 46
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.58 E-value=2.6e-14 Score=126.88 Aligned_cols=213 Identities=8% Similarity=0.017 Sum_probs=142.4
Q ss_pred CCHHHHHHHHHHH--------------HHHHHHcCC-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHH
Q 024043 27 SKYEDAADLFDKA--------------ANSFKLAKS-WDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNE 90 (273)
Q Consensus 27 ~~~~~A~~~~~~a--------------~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~e 90 (273)
+++++|..+|.++ |.++...|+ +++|+.+|.+++.+..+ -..++.++|.++... ++++
T Consensus 111 g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~------~~~a~~~~g~~~~~~g~~~e 184 (382)
T 2h6f_A 111 ERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK------NYQVWHHRRVLVEWLRDPSQ 184 (382)
T ss_dssp CCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCCTT
T ss_pred CChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHccCHHH
Confidence 3466666666654 556666775 77777777777766422 234666777777666 7777
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHH-hcCHH
Q 024043 91 AISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAE-LEQYH 169 (273)
Q Consensus 91 A~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~-~g~y~ 169 (273)
|+.+|++|+.+.... ..++.++|.++..+|++++|+.+|++|+++.... ..++..+|.++.. .|.++
T Consensus 185 Al~~~~kal~ldP~~------~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~------~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 185 ELEFIADILNQDAKN------YHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN------NSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCSCS
T ss_pred HHHHHHHHHHhCccC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCcch
Confidence 777777777765433 3477788888888888888888888888775422 3567788888887 44446
Q ss_pred HH-----HHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcC--CHHHHHHHHHHHH----------HHHHHHhh-c--
Q 024043 170 KS-----IEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKG--DVVAITNALERYQ----------DIAASMDE-E-- 229 (273)
Q Consensus 170 ~A-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~g--d~~~A~~~~~~~~----------~ll~a~~~-~-- 229 (273)
+| +++|++++...+++. ..+++++.++...| ++.+|.+.+.+.. .+...+.. +
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~-------~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~ 325 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNE-------SAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLEN 325 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCH-------HHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHCCCCH-------HHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcc
Confidence 66 477777776555442 35667777777777 6778877776541 22222222 1
Q ss_pred ---CHh-HHHHHHHhhhcc-CCCchhHHHHHHHHHHhccc
Q 024043 230 ---DIA-KFTDVVKEFDSM-TPLDPWKTTLLLRVKEKLKA 264 (273)
Q Consensus 230 ---d~~-~~~~~~~~~~~~-~~ld~~~~~~l~~~~~~~~~ 264 (273)
+.. .+.+++.-|..+ ..+||.....+......+..
T Consensus 326 ~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 326 QCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 222 468999999999 89999998888877776653
No 47
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.58 E-value=1.1e-13 Score=118.17 Aligned_cols=196 Identities=15% Similarity=0.126 Sum_probs=158.3
Q ss_pred HhhHHHHHHHHHHhhcc----c---c--CC-CC-CHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHH
Q 024043 5 IARAEEFEKKAEKKLNG----W---G--LF-GS-KYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKL 59 (273)
Q Consensus 5 ~~~a~~l~~~Aek~~k~----~---~--~~-~~-~~~~A~~~~~~a--------------~~~~~~~~~~~~A~~~~~~a 59 (273)
.++|..++.++-+.-.. + + ++ .+ ++++|..+|.++ |.++...|++++|+.+|.++
T Consensus 72 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 151 (330)
T 3hym_B 72 ANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTA 151 (330)
T ss_dssp HHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 46777777777664431 1 1 12 26 899999998875 67899999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 024043 60 ANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKA 138 (273)
Q Consensus 60 ~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~A 138 (273)
....... ...+..+|.+|... ++++|+.++++++.+.... ..++..+|.++...|++++|+.+++++
T Consensus 152 ~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a 219 (330)
T 3hym_B 152 AQLMKGC------HLPMLYIGLEYGLTNNSKLAERFFSQALSIAPED------PFVMHEVGVVAFQNGEWKTAEKWFLDA 219 (330)
T ss_dssp HHHTTTC------SHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhcccc------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 9886432 23566689999877 9999999999999875433 468999999999999999999999999
Q ss_pred HHHHhccCCc---ccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHH
Q 024043 139 ADMFQNEEVT---TSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNA 215 (273)
Q Consensus 139 l~~~~~~~~~---~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~ 215 (273)
+.+.+..+.. .....++..+|.++...|++++|+.+|++++...+.+ ...+..+|.++...|++.+|...
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~ 292 (330)
T 3hym_B 220 LEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQN-------ASTYSAIGYIHSLMGNFENAVDY 292 (330)
T ss_dssp HHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-------SHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccc-------hHHHHHHHHHHHHhccHHHHHHH
Confidence 9999776543 2224689999999999999999999999998654443 24677889999999999999999
Q ss_pred HHHH
Q 024043 216 LERY 219 (273)
Q Consensus 216 ~~~~ 219 (273)
+++.
T Consensus 293 ~~~a 296 (330)
T 3hym_B 293 FHTA 296 (330)
T ss_dssp HHTT
T ss_pred HHHH
Confidence 8875
No 48
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.57 E-value=2.3e-13 Score=118.19 Aligned_cols=177 Identities=12% Similarity=0.073 Sum_probs=130.1
Q ss_pred CCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHH
Q 024043 27 SKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEA 91 (273)
Q Consensus 27 ~~~~~A~~~~~~a--------------~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA 91 (273)
+++++|..+|.++ |.++...|++++|+.+|.+++.+... ...++..+|.+|... ++++|
T Consensus 78 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~l~~~~~~~g~~~~A 151 (368)
T 1fch_A 78 GDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD------NQTALMALAVSFTNESLQRQA 151 (368)
T ss_dssp TCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCHHHH
Confidence 5777777776654 66778888888888888888766421 133555556666554 66666
Q ss_pred HHHHHHHHHHHHhcCChh-------------------------------------------H--HHHHHHHHHHHHHhcC
Q 024043 92 ISCLEQAVNMFCDIGRLS-------------------------------------------M--AARYYKEIAELYESEH 126 (273)
Q Consensus 92 ~~~~~~Al~~~~~~g~~~-------------------------------------------~--~a~~l~~lg~~~~~~g 126 (273)
+.+|++++.+.+...... . .+.++..+|.++...|
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g 231 (368)
T 1fch_A 152 CEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSG 231 (368)
T ss_dssp HHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcC
Confidence 666655554332211111 0 3678899999999999
Q ss_pred CHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhc
Q 024043 127 NIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCK 206 (273)
Q Consensus 127 ~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~ 206 (273)
++++|+.+|++++.+.+.. ..++..+|.++...|++++|+.+|++++...+.+ ...+..+|.++...
T Consensus 232 ~~~~A~~~~~~al~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~~l~~~~~~~ 298 (368)
T 1fch_A 232 EYDKAVDCFTAALSVRPND------YLLWNKLGATLANGNQSEEAVAAYRRALELQPGY-------IRSRYNLGISCINL 298 (368)
T ss_dssp CHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHC
Confidence 9999999999999985422 4679999999999999999999999998654433 24678889999999
Q ss_pred CCHHHHHHHHHHHHHH
Q 024043 207 GDVVAITNALERYQDI 222 (273)
Q Consensus 207 gd~~~A~~~~~~~~~l 222 (273)
|++..|...+++...+
T Consensus 299 g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 299 GAHREAVEHFLEALNM 314 (368)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999987544
No 49
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.56 E-value=3.1e-13 Score=112.78 Aligned_cols=171 Identities=22% Similarity=0.286 Sum_probs=133.5
Q ss_pred HhhHHHHHHHHHHhhccccCCCCCHHHHHHHHH-----------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Q 024043 5 IARAEEFEKKAEKKLNGWGLFGSKYEDAADLFD-----------------KAANSFKLAKSWDKAGATYVKLANCHLKLE 67 (273)
Q Consensus 5 ~~~a~~l~~~Aek~~k~~~~~~~~~~~A~~~~~-----------------~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 67 (273)
+..+..++..|...++ .++|++|...|. ..|.+|...|+|++|+..|.+++..+....
T Consensus 12 ~~~~~~~~~~a~~~~~-----~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~ 86 (261)
T 3qky_A 12 HSSPQEAFERAMEFYN-----QGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDP 86 (261)
T ss_dssp CSSHHHHHHHHHHHHH-----TTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred CCCHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCc
Confidence 3467777777777666 134555554444 457889999999999999999998864332
Q ss_pred CHHHHHHHHHHHHHHHhc--------c-CHHHHHHHHHHHHHHHHhcCChhHH-----------HHHHHHHHHHHHhcCC
Q 024043 68 SKHEAAQAYVDAAHCYKK--------T-SSNEAISCLEQAVNMFCDIGRLSMA-----------ARYYKEIAELYESEHN 127 (273)
Q Consensus 68 ~~~~aa~~~~~~~~~~~~--------~-~~~eA~~~~~~Al~~~~~~g~~~~~-----------a~~l~~lg~~~~~~g~ 127 (273)
....++..+|.++.. . ++++|+..|++++..++.......+ +..+..+|.+|...|+
T Consensus 87 ---~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~ 163 (261)
T 3qky_A 87 ---RVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERREL 163 (261)
T ss_dssp ---THHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ---hhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 345678899999977 6 9999999999999988765443322 1223889999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHh----------cCHHHHHHHHHHHHHHHhccc
Q 024043 128 IEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAEL----------EQYHKSIEIYEEIARQSLNNN 186 (273)
Q Consensus 128 ~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~----------g~y~~A~~~~~~~~~~~~~~~ 186 (273)
+++|+..|+++++.++... ....++..+|.++..+ |++++|+..|++++...++++
T Consensus 164 ~~~A~~~~~~~l~~~p~~~---~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 229 (261)
T 3qky_A 164 YEAAAVTYEAVFDAYPDTP---WADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSP 229 (261)
T ss_dssp HHHHHHHHHHHHHHCTTST---THHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHHHHHCCCCc---hHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCCh
Confidence 9999999999999886542 3457899999999977 999999999999988777653
No 50
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.56 E-value=5.6e-13 Score=111.21 Aligned_cols=171 Identities=17% Similarity=0.110 Sum_probs=135.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHH
Q 024043 36 FDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARY 114 (273)
Q Consensus 36 ~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~ 114 (273)
+...|..+...|+|++|+..|.+++.... +......++..+|.+|... ++++|+.+|++++.+++... ....+
T Consensus 18 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~a 91 (261)
T 3qky_A 18 AFERAMEFYNQGKYDRAIEYFKAVFTYGR---THEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDP---RVPQA 91 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHGGGCS---CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT---THHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCC---CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCc---hhHHH
Confidence 33458888899999999999999987653 2223467889999999887 99999999999999876443 34578
Q ss_pred HHHHHHHHHh--------cCCHHHHHHHHHHHHHHHhccCCcccHHHHH--------------HHHHHHHHHhcCHHHHH
Q 024043 115 YKEIAELYES--------EHNIEQTIVFFEKAADMFQNEEVTTSANQCK--------------QKVAQYAAELEQYHKSI 172 (273)
Q Consensus 115 l~~lg~~~~~--------~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~--------------~~~a~~~~~~g~y~~A~ 172 (273)
+..+|.++.. .|++++|+..|+++++.++.... ...++ ..+|.++...|+|++|+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~---~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 168 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHEL---VDDATQKIRELRAKLARKQYEAARLYERRELYEAAA 168 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTT---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 9999999999 99999999999999999876543 22333 88999999999999999
Q ss_pred HHHHHHHHHHhccchhhhchhhHHHHHHHHHHhc----------CCHHHHHHHHHHH
Q 024043 173 EIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCK----------GDVVAITNALERY 219 (273)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~----------gd~~~A~~~~~~~ 219 (273)
..|++++...++++ .....++.+|.++... |++.+|...+++.
T Consensus 169 ~~~~~~l~~~p~~~----~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~ 221 (261)
T 3qky_A 169 VTYEAVFDAYPDTP----WADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERL 221 (261)
T ss_dssp HHHHHHHHHCTTST----THHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCc----hHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHH
Confidence 99999987666542 1345678888888876 6666666666654
No 51
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.56 E-value=7.6e-13 Score=110.95 Aligned_cols=161 Identities=15% Similarity=0.224 Sum_probs=122.9
Q ss_pred CCHHHHHHHHHHH------------HHHHHH----cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc----c
Q 024043 27 SKYEDAADLFDKA------------ANSFKL----AKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKK----T 86 (273)
Q Consensus 27 ~~~~~A~~~~~~a------------~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~----~ 86 (273)
+++++|..+|.++ |.+|.. .+++++|+.+|.++++. + ...++..+|.+|.. .
T Consensus 20 ~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~----~~~a~~~lg~~~~~g~~~~ 91 (273)
T 1ouv_A 20 KDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL----N----YSNGCHLLGNLYYSGQGVS 91 (273)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----T----CHHHHHHHHHHHHHTSSSC
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC----C----CHHHHHHHHHHHhCCCCcc
Confidence 4666666666654 667888 88899999999888765 2 24677788888876 5
Q ss_pred -CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHH
Q 024043 87 -SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYES----EHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQY 161 (273)
Q Consensus 87 -~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~----~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~ 161 (273)
++++|+.+|++|++. + .+.++.++|.+|.. .+++++|+.+|++|++.- ...++..+|.+
T Consensus 92 ~~~~~A~~~~~~a~~~----~----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--------~~~a~~~lg~~ 155 (273)
T 1ouv_A 92 QNTNKALQYYSKACDL----K----YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--------DGDGCTILGSL 155 (273)
T ss_dssp CCHHHHHHHHHHHHHT----T----CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--------CHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHc----C----CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--------cHHHHHHHHHH
Confidence 889999999988864 2 25678888888888 889999999999888752 13567888888
Q ss_pred HHH----hcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHh----cCCHHHHHHHHHHHH
Q 024043 162 AAE----LEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLC----KGDVVAITNALERYQ 220 (273)
Q Consensus 162 ~~~----~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~----~gd~~~A~~~~~~~~ 220 (273)
+.. .+++++|+.+|++++.. + ....++.+|.++.. .+|+.+|...+++..
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~--~-------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~ 213 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDL--K-------DSPGCFNAGNMYHHGEGATKNFKEALARYSKAC 213 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHT--T-------CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHH
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHC--C-------CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHH
Confidence 888 88999999999888642 2 12356778888888 888888888887754
No 52
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.55 E-value=3.2e-13 Score=116.20 Aligned_cols=236 Identities=14% Similarity=0.058 Sum_probs=168.3
Q ss_pred HhhHHHHHHHHHHhhcc----c-----cCCC-CCHHHHHHHHHHH-----------------------------HHHHHH
Q 024043 5 IARAEEFEKKAEKKLNG----W-----GLFG-SKYEDAADLFDKA-----------------------------ANSFKL 45 (273)
Q Consensus 5 ~~~a~~l~~~Aek~~k~----~-----~~~~-~~~~~A~~~~~~a-----------------------------~~~~~~ 45 (273)
.++|.+.+.++-+.-.. + .++. +++++|...|.++ +.++..
T Consensus 53 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 132 (359)
T 3ieg_A 53 SKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFD 132 (359)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777664331 1 1122 7888888888766 578888
Q ss_pred cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHh
Q 024043 46 AKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYES 124 (273)
Q Consensus 46 ~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~ 124 (273)
.|++++|+.+|.++...... ...++..+|.++... ++++|+.++++++.+.+.. ..++..+|.++..
T Consensus 133 ~~~~~~A~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~ 200 (359)
T 3ieg_A 133 GADYTAAITFLDKILEVCVW------DAELRELRAECFIKEGEPRKAISDLKAASKLKSDN------TEAFYKISTLYYQ 200 (359)
T ss_dssp TTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCC------HHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCC------chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH
Confidence 99999999999999877432 236788899999887 9999999999998864322 3689999999999
Q ss_pred cCCHHHHHHHHHHHHHHHhccCCcccH------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHH
Q 024043 125 EHNIEQTIVFFEKAADMFQNEEVTTSA------NQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLN 198 (273)
Q Consensus 125 ~g~~~~A~~~y~~Al~~~~~~~~~~~~------~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (273)
.|++++|+.+|++++++.+........ .......|.++...|++++|+..|++++...+.++. .....+..
T Consensus 201 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~~~ 277 (359)
T 3ieg_A 201 LGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAE---YTVRSKER 277 (359)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHH---HHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchH---HHHHHHHH
Confidence 999999999999999887654321100 112345688999999999999999999876555421 12234567
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHH---------HHHHhhcCHhHHHHHHHhhhccCCCchhHHHHH
Q 024043 199 AGICQLCKGDVVAITNALERYQDI---------AASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLL 255 (273)
Q Consensus 199 ~gl~~l~~gd~~~A~~~~~~~~~l---------l~a~~~~d~~~~~~~~~~~~~~~~ld~~~~~~l 255 (273)
+|.++...|++.+|...+++...+ .-+........+.+++..|..+..++|-...+.
T Consensus 278 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~ 343 (359)
T 3ieg_A 278 ICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIR 343 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHH
Confidence 889999999999999999986511 001111123346667777776666666544333
No 53
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.55 E-value=1.7e-12 Score=111.69 Aligned_cols=244 Identities=14% Similarity=0.064 Sum_probs=158.7
Q ss_pred HhhHHHHHHHHHHhhcc----c-----cCCC-CCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHH
Q 024043 5 IARAEEFEKKAEKKLNG----W-----GLFG-SKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLA 60 (273)
Q Consensus 5 ~~~a~~l~~~Aek~~k~----~-----~~~~-~~~~~A~~~~~~a--------------~~~~~~~~~~~~A~~~~~~a~ 60 (273)
.++|.+++.++-+.-.. + .++. +++++|...|.++ |.++...|++++|+.+|.++.
T Consensus 19 ~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 98 (359)
T 3ieg_A 19 LADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVL 98 (359)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 56777777777664421 1 1122 7888888877765 567777888888888888877
Q ss_pred HHHHHcCCHHHH---------HHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHH
Q 024043 61 NCHLKLESKHEA---------AQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQ 130 (273)
Q Consensus 61 ~~~~~~~~~~~a---------a~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~ 130 (273)
.+....++.... ...+...|.++... ++++|+.++++++...+.. ..++..+|.++...|++++
T Consensus 99 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 172 (359)
T 3ieg_A 99 KSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWD------AELRELRAECFIKEGEPRK 172 (359)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHH
T ss_pred hcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHHCCCHHH
Confidence 653200011111 11123336677666 8899999999888775432 4588899999999999999
Q ss_pred HHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhc-----hhhHHHHHHHHHHh
Q 024043 131 TIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYG-----VKGHLLNAGICQLC 205 (273)
Q Consensus 131 A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~gl~~l~ 205 (273)
|+.++++++.+.+. ...++..+|.++...|++++|+..|++++...+..+..... ........+.++..
T Consensus 173 A~~~~~~~~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 246 (359)
T 3ieg_A 173 AISDLKAASKLKSD------NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIR 246 (359)
T ss_dssp HHHHHHHHHTTCSC------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999987432 23678999999999999999999999998665544211000 00112345778899
Q ss_pred cCCHHHHHHHHHHHHHH--------HH-----HHhhcCHhHHHHHHHhhhccCCCchhHHHHHHHHHH
Q 024043 206 KGDVVAITNALERYQDI--------AA-----SMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKE 260 (273)
Q Consensus 206 ~gd~~~A~~~~~~~~~l--------l~-----a~~~~d~~~~~~~~~~~~~~~~ld~~~~~~l~~~~~ 260 (273)
.|++.+|...+++...+ .. +........+.+++..|+.+..++|-...++..+..
T Consensus 247 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 314 (359)
T 3ieg_A 247 DGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAE 314 (359)
T ss_dssp TTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 99999999999876510 00 111112334566666666666666655555554444
No 54
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.55 E-value=1.3e-13 Score=112.79 Aligned_cols=158 Identities=16% Similarity=0.207 Sum_probs=114.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHH
Q 024043 38 KAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYK 116 (273)
Q Consensus 38 ~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~ 116 (273)
..|.++...|++++|+.+|.++...... ...++..+|.++... ++++|+.++++++.+.... ..++.
T Consensus 62 ~la~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~ 129 (243)
T 2q7f_A 62 NFANLLSSVNELERALAFYDKALELDSS------AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN------GDLFY 129 (243)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCS------HHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCc------chHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC------HHHHH
Confidence 3467788888888888888888776422 245677778887766 8888888888887765432 34677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHH
Q 024043 117 EIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHL 196 (273)
Q Consensus 117 ~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (273)
.+|.++...|++++|+.++++++++.... ..++..+|.++...|++++|+.+|++++...+.+ ...+
T Consensus 130 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~ 196 (243)
T 2q7f_A 130 MLGTVLVKLEQPKLALPYLQRAVELNEND------TEARFQFGMCLANEGMLDEALSQFAAVTEQDPGH-------ADAF 196 (243)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTC-------HHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCcc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-------HHHH
Confidence 88888888888888888888888775422 3567788888888888888888888876543332 2356
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 024043 197 LNAGICQLCKGDVVAITNALERYQ 220 (273)
Q Consensus 197 ~~~gl~~l~~gd~~~A~~~~~~~~ 220 (273)
..++.++...|++..|...+++..
T Consensus 197 ~~la~~~~~~~~~~~A~~~~~~~~ 220 (243)
T 2q7f_A 197 YNAGVTYAYKENREKALEMLDKAI 220 (243)
T ss_dssp HHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHH
Confidence 677788888888888887777753
No 55
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.55 E-value=8.2e-13 Score=120.51 Aligned_cols=197 Identities=12% Similarity=0.114 Sum_probs=158.4
Q ss_pred HhhHHHHHHHHHHhhcc--------ccCCC-CCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHH
Q 024043 5 IARAEEFEKKAEKKLNG--------WGLFG-SKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLAN 61 (273)
Q Consensus 5 ~~~a~~l~~~Aek~~k~--------~~~~~-~~~~~A~~~~~~a--------------~~~~~~~~~~~~A~~~~~~a~~ 61 (273)
.++|.+.+.++-+.-.. ..++. +++++|...|.++ |.++...|++++|+..|.++..
T Consensus 259 ~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 338 (537)
T 3fp2_A 259 LLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQS 338 (537)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 46777777777664321 11233 8899999888875 6788889999999999999998
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 024043 62 CHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAAD 140 (273)
Q Consensus 62 ~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~ 140 (273)
..... ..++..+|.++... ++++|+.++++++.+.... ..++..+|.++...|++++|+.+|+++++
T Consensus 339 ~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 406 (537)
T 3fp2_A 339 LNPEN------VYPYIQLACLLYKQGKFTESEAFFNETKLKFPTL------PEVPTFFAEILTDRGDFDTAIKQYDIAKR 406 (537)
T ss_dssp HCTTC------SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------THHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 75332 25678899999777 9999999999999886544 34888999999999999999999999999
Q ss_pred HHhccCCcccHHHHHHHHHHHHHHh----------cCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHH
Q 024043 141 MFQNEEVTTSANQCKQKVAQYAAEL----------EQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVV 210 (273)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~a~~~~~~----------g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~ 210 (273)
+.+...........+...|.++... |++++|+.+|++++...+++ ...+..+|.++...|++.
T Consensus 407 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~-------~~~~~~l~~~~~~~g~~~ 479 (537)
T 3fp2_A 407 LEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRS-------EQAKIGLAQLKLQMEKID 479 (537)
T ss_dssp HHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHH
T ss_pred cCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhccHH
Confidence 9987766544445677888999998 99999999999998665543 246788899999999999
Q ss_pred HHHHHHHHHH
Q 024043 211 AITNALERYQ 220 (273)
Q Consensus 211 ~A~~~~~~~~ 220 (273)
+|...+++..
T Consensus 480 ~A~~~~~~al 489 (537)
T 3fp2_A 480 EAIELFEDSA 489 (537)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999875
No 56
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.55 E-value=1.1e-12 Score=108.05 Aligned_cols=171 Identities=16% Similarity=0.091 Sum_probs=138.6
Q ss_pred CCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHH
Q 024043 27 SKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEA 91 (273)
Q Consensus 27 ~~~~~A~~~~~~a--------------~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA 91 (273)
+++++|..+|.++ |.+|...|++++|..+|.++...... ...++..+|.++... ++++|
T Consensus 51 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~~g~~~~A 124 (252)
T 2ho1_A 51 GNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR------NARVLNNYGGFLYEQKRYEEA 124 (252)
T ss_dssp TCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHH
T ss_pred CChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC------cHHHHHHHHHHHHHHhHHHHH
Confidence 4666666666654 77899999999999999999987432 246788899999777 99999
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHH
Q 024043 92 ISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKS 171 (273)
Q Consensus 92 ~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A 171 (273)
+.+|++++. .+.......++..+|.++...|++++|+.+|++++++.... ..++..+|.++...|++++|
T Consensus 125 ~~~~~~~~~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 125 YQRLLEASQ----DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQ------PSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHHHHHHTT----CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC------HHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHh----CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHcCCHHHH
Confidence 999999987 33445567899999999999999999999999999885422 46789999999999999999
Q ss_pred HHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043 172 IEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ 220 (273)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~ 220 (273)
+.+|++++...+.+ ...+..++.++...|++..|.+.+++..
T Consensus 195 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 236 (252)
T 2ho1_A 195 RQYYDLFAQGGGQN-------ARSLLLGIRLAKVFEDRDTAASYGLQLK 236 (252)
T ss_dssp HHHHHHHHTTSCCC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCc-------HHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 99999987533322 2355677888899999999999888863
No 57
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.54 E-value=8.4e-13 Score=120.44 Aligned_cols=230 Identities=13% Similarity=0.063 Sum_probs=169.4
Q ss_pred hhHHHHHHHHHHhhccccCCCCCHH----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 024043 6 ARAEEFEKKAEKKLNGWGLFGSKYE----DAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAH 81 (273)
Q Consensus 6 ~~a~~l~~~Aek~~k~~~~~~~~~~----~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~ 81 (273)
.++...+.+|.+.+....-..|+.. .-+..+...|.++...|++++|+.+|.++..... + ..++..+|.
T Consensus 212 ~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~---~----~~~~~~l~~ 284 (537)
T 3fp2_A 212 LVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHP---T----PNSYIFLAL 284 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC---C----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC---C----chHHHHHHH
Confidence 3455566666666652111123322 2345667778999999999999999999998632 2 467888999
Q ss_pred HHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHH
Q 024043 82 CYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQ 160 (273)
Q Consensus 82 ~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~ 160 (273)
++... ++++|+.+|++++.+.... +.++..+|.++...|++++|+.+|++++.+.... ..++..+|.
T Consensus 285 ~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~ 352 (537)
T 3fp2_A 285 TLADKENSQEFFKFFQKAVDLNPEY------PPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN------VYPYIQLAC 352 (537)
T ss_dssp HTCCSSCCHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------SHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHhccCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHH
Confidence 99877 9999999999999876542 4579999999999999999999999999986443 256889999
Q ss_pred HHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH---------------
Q 024043 161 YAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDIAAS--------------- 225 (273)
Q Consensus 161 ~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~ll~a--------------- 225 (273)
++...|++++|+.+|++++...+.+ ...+..+|.++...|++..|...+++...+...
T Consensus 353 ~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a 425 (537)
T 3fp2_A 353 LLYKQGKFTESEAFFNETKLKFPTL-------PEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKA 425 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTC-------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHH
Confidence 9999999999999999998665443 235677899999999999999999886532110
Q ss_pred HhhcCH----------hHHHHHHHhhhccCCCchhHHHHHHHHHHh
Q 024043 226 MDEEDI----------AKFTDVVKEFDSMTPLDPWKTTLLLRVKEK 261 (273)
Q Consensus 226 ~~~~d~----------~~~~~~~~~~~~~~~ld~~~~~~l~~~~~~ 261 (273)
...... ..+.+++..|..+..++|....++..+...
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 471 (537)
T 3fp2_A 426 TILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQL 471 (537)
T ss_dssp HHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 001111 677888888887777777666555555443
No 58
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.53 E-value=8.9e-13 Score=122.08 Aligned_cols=238 Identities=12% Similarity=0.030 Sum_probs=164.1
Q ss_pred HhhHHHHHHHHHHhhc-ccc--------CCC-CCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHH
Q 024043 5 IARAEEFEKKAEKKLN-GWG--------LFG-SKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLA 60 (273)
Q Consensus 5 ~~~a~~l~~~Aek~~k-~~~--------~~~-~~~~~A~~~~~~a--------------~~~~~~~~~~~~A~~~~~~a~ 60 (273)
.++|.+++.++-+.-. ... +.. |++++|...|.++ +.+|...|++++|..+|.++.
T Consensus 321 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 400 (597)
T 2xpi_A 321 FIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSS 400 (597)
T ss_dssp HHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4566666666654322 110 112 6666666666543 466777788888888888777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043 61 NCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAA 139 (273)
Q Consensus 61 ~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al 139 (273)
++... -..++..++.+|... ++++|+++|++++.+.... ..++..+|.++...|++++|+++|++++
T Consensus 401 ~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 468 (597)
T 2xpi_A 401 TMDPQ------FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGT------HLPYLFLGMQHMQLGNILLANEYLQSSY 468 (597)
T ss_dssp HHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTC------SHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc------hHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 65321 134677788888666 8999999999888765432 3578889999999999999999999999
Q ss_pred HHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 024043 140 DMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERY 219 (273)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~ 219 (273)
++... ...++..+|.++...|++++|+++|++++......+.........+..+|.++...|+++.|...+++.
T Consensus 469 ~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 542 (597)
T 2xpi_A 469 ALFQY------DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQG 542 (597)
T ss_dssp HHCCC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhCCC------ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 87533 236789999999999999999999999976543311111112457788899999999999999999886
Q ss_pred H-----------HHHHHHhhcCHhHHHHHHHhhhccCCCchhHHHHHHHHHHhc
Q 024043 220 Q-----------DIAASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKL 262 (273)
Q Consensus 220 ~-----------~ll~a~~~~d~~~~~~~~~~~~~~~~ld~~~~~~l~~~~~~~ 262 (273)
. .+...+. ....+.+++..|..+..++|-.......+.+.+
T Consensus 543 ~~~~p~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 543 LLLSTNDANVHTAIALVYL--HKKIPGLAITHLHESLAISPNEIMASDLLKRAL 594 (597)
T ss_dssp HHHSSCCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTT
T ss_pred HHhCCCChHHHHHHHHHHH--HhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 4 2222221 123456666667777777777666666665554
No 59
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.53 E-value=2.9e-13 Score=123.33 Aligned_cols=188 Identities=9% Similarity=0.085 Sum_probs=149.4
Q ss_pred HHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHH
Q 024043 35 LFDKAANSFKLAKSW-DKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAA 112 (273)
Q Consensus 35 ~~~~a~~~~~~~~~~-~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a 112 (273)
.+...|.++...|++ ++|+.+|.+++++... .+.++..+|.+|... ++++|+.+|++|+.+. +. +
T Consensus 104 ~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~--~ 170 (474)
T 4abn_A 104 ALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE------LVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC-----KN--K 170 (474)
T ss_dssp HHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC-----CC--H
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CC--H
Confidence 334458889999999 9999999999988532 246889999999887 9999999999999874 23 4
Q ss_pred HHHHHHHHHHHhc---------CCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHh--------cCHHHHHHHH
Q 024043 113 RYYKEIAELYESE---------HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAEL--------EQYHKSIEIY 175 (273)
Q Consensus 113 ~~l~~lg~~~~~~---------g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~--------g~y~~A~~~~ 175 (273)
.++.++|.++... |++++|+.+|++|+++.... ..++..+|.++..+ |+|++|+..|
T Consensus 171 ~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~ 244 (474)
T 4abn_A 171 VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD------GRSWYILGNAYLSLYFNTGQNPKISQQALSAY 244 (474)
T ss_dssp HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHhhccccchHHHHHHHH
Confidence 8999999999999 99999999999999986432 46799999999999 9999999999
Q ss_pred HHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHHHH-------HH--HHhhcCHhHHHHHHHhhhccC
Q 024043 176 EEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDI-------AA--SMDEEDIAKFTDVVKEFDSMT 245 (273)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~l-------l~--a~~~~d~~~~~~~~~~~~~~~ 245 (273)
++++...+.. ......++++|.++...|++.+|...+++...+ .. +.-......+.+++..|..+.
T Consensus 245 ~~al~~~p~~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~~ 319 (474)
T 4abn_A 245 AQAEKVDRKA----SSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKTK 319 (474)
T ss_dssp HHHHHHCGGG----GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHhCCCc----ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9998765411 123357788999999999999999999987521 00 111233457778888776663
No 60
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.52 E-value=2.5e-12 Score=109.45 Aligned_cols=162 Identities=11% Similarity=0.024 Sum_probs=107.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcC------------
Q 024043 40 ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIG------------ 106 (273)
Q Consensus 40 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g------------ 106 (273)
|.++...|++++|+.+|.++..+... ...++..+|.++... ++++|+.++++++.......
T Consensus 62 ~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (327)
T 3cv0_A 62 GLTQAENEKDGLAIIALNHARMLDPK------DIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVD 135 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC----------
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCcC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHH
Confidence 56677777777777777777765321 123455555555444 56666666655554321111
Q ss_pred -----------------ChhH--------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHH
Q 024043 107 -----------------RLSM--------------AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCK 155 (273)
Q Consensus 107 -----------------~~~~--------------~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~ 155 (273)
++.. ...++..+|.++...|++++|+.++++++++.+. ...++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~ 209 (327)
T 3cv0_A 136 IDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD------DAQLW 209 (327)
T ss_dssp ----------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHH
T ss_pred HHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC------cHHHH
Confidence 1111 1456778888888888888888888888877432 13567
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043 156 QKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ 220 (273)
Q Consensus 156 ~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~ 220 (273)
..+|.++...|++++|+.+|++++...+.+ ...+..++.++...|++..|...+++..
T Consensus 210 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 267 (327)
T 3cv0_A 210 NKLGATLANGNRPQEALDAYNRALDINPGY-------VRVMYNMAVSYSNMSQYDLAAKQLVRAI 267 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 888888888888888888888887544332 2355677888888888888888887764
No 61
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.52 E-value=8.9e-12 Score=100.16 Aligned_cols=170 Identities=9% Similarity=0.037 Sum_probs=134.1
Q ss_pred CCHHHHHHHHHH--------------HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc--cCHHH
Q 024043 27 SKYEDAADLFDK--------------AANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKK--TSSNE 90 (273)
Q Consensus 27 ~~~~~A~~~~~~--------------a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~--~~~~e 90 (273)
+++++|..+|.+ .|.+|...|++++|..+|.++...... ...++..+|.++.. .++++
T Consensus 22 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~~~~~~~ 95 (225)
T 2vq2_A 22 QDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD------SAEINNNYGWFLCGRLNRPAE 95 (225)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHTTTCCHHH
T ss_pred hhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHhcCcHHH
Confidence 455566555554 477899999999999999999987432 23567888888854 49999
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHH
Q 024043 91 AISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHK 170 (273)
Q Consensus 91 A~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~ 170 (273)
|+.++++++. .+.......++..+|.++...|++++|+.+|+++++..... ..++..+|.++...|++++
T Consensus 96 A~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 96 SMAYFDKALA----DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQF------PPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HHHHHHHHHT----STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHc----CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------chHHHHHHHHHHHcCCHHH
Confidence 9999999987 33444456789999999999999999999999999875432 4678999999999999999
Q ss_pred HHHHHHHHHHHHh-ccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 024043 171 SIEIYEEIARQSL-NNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERY 219 (273)
Q Consensus 171 A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~ 219 (273)
|+.+|++++...+ .+. ..+..++.++...|+...|...++..
T Consensus 166 A~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQA-------DDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp HHHHHHHHHHHHCSCCH-------HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCH-------HHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 9999999987655 332 23455667788899998887777664
No 62
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.52 E-value=3.8e-13 Score=104.79 Aligned_cols=167 Identities=10% Similarity=0.071 Sum_probs=137.9
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCCh
Q 024043 30 EDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRL 108 (273)
Q Consensus 30 ~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~ 108 (273)
+.....+...|.++...|++++|+..|.++...... ...++..+|.++... ++++|+.++++++.+...
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---- 74 (186)
T 3as5_A 5 DIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAF------DVDVALHLGIAYVKTGAVDRGTELLERSLADAPD---- 74 (186)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----
T ss_pred chhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----
Confidence 455677888899999999999999999998765321 256788899999777 999999999999987432
Q ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchh
Q 024043 109 SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLL 188 (273)
Q Consensus 109 ~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~ 188 (273)
...++..+|.++...|++++|+.++++++.+.... ..++..+|.++...|++++|+++|++++...+.+
T Consensus 75 --~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--- 143 (186)
T 3as5_A 75 --NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN------FNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE--- 143 (186)
T ss_dssp --CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---
T ss_pred --CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHh------HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccc---
Confidence 24688999999999999999999999999885432 3678999999999999999999999997654433
Q ss_pred hhchhhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 024043 189 KYGVKGHLLNAGICQLCKGDVVAITNALERYQD 221 (273)
Q Consensus 189 ~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~ 221 (273)
...+..++.++...|++.+|...+++...
T Consensus 144 ----~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 144 ----GKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 24567889999999999999999988643
No 63
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.51 E-value=1.9e-12 Score=105.96 Aligned_cols=172 Identities=13% Similarity=0.036 Sum_probs=135.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHH
Q 024043 38 KAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYK 116 (273)
Q Consensus 38 ~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~ 116 (273)
..|..+...|+|++|+..|.+++..+... .....++..+|.+|... ++++|+..|++++..++.... ...++.
T Consensus 9 ~~a~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~---~~~a~~ 82 (225)
T 2yhc_A 9 ATAQQKLQDGNWRQAITQLEALDNRYPFG---PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN---IDYVMY 82 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTS---TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT---HHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc---HHHHHH
Confidence 44788888999999999999999865322 23456788899999877 999999999999998875443 345667
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHHHHHHhccCCcccH-----------HHHHHHHHHHHHHhcC
Q 024043 117 EIAELYES------------------EHNIEQTIVFFEKAADMFQNEEVTTSA-----------NQCKQKVAQYAAELEQ 167 (273)
Q Consensus 117 ~lg~~~~~------------------~g~~~~A~~~y~~Al~~~~~~~~~~~~-----------~~~~~~~a~~~~~~g~ 167 (273)
.+|.++.. .|++++|+..|+++++.++.......+ ......+|.++...|+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~ 162 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGA 162 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 77777654 579999999999999998876532211 1122577889999999
Q ss_pred HHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 024043 168 YHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERY 219 (273)
Q Consensus 168 y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~ 219 (273)
|++|+..|++++...++++ .....++.+|.++...|++..|...++..
T Consensus 163 ~~~A~~~~~~~l~~~p~~~----~~~~a~~~l~~~~~~~g~~~~A~~~~~~l 210 (225)
T 2yhc_A 163 WVAVVNRVEGMLRDYPDTQ----ATRDALPLMENAYRQMQMNAQAEKVAKII 210 (225)
T ss_dssp HHHHHHHHHHHHHHSTTSH----HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCcCCC----ccHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 9999999999998777653 23457888999999999999999888763
No 64
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.51 E-value=2.5e-13 Score=120.49 Aligned_cols=155 Identities=9% Similarity=0.033 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-C-HHHHHHHHHHHHHHHHhcCChhH
Q 024043 33 ADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-S-SNEAISCLEQAVNMFCDIGRLSM 110 (273)
Q Consensus 33 ~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~-~~eA~~~~~~Al~~~~~~g~~~~ 110 (273)
.+.+...|.++...|++++|+.+|.+++.+... -..++...|.++... + +++|+.+|++|+.+..+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~------~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~----- 165 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA------NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN----- 165 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC-----
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc------CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCC-----
Confidence 456677899999999999999999999987532 246888999999877 5 999999999999987654
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhh
Q 024043 111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKY 190 (273)
Q Consensus 111 ~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~ 190 (273)
..+|.++|.++..+|++++|+.+|++|+++.... ..++..+|.++..+|++++|+.+|++++...+.+.
T Consensus 166 -~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~------~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~---- 234 (382)
T 2h6f_A 166 -YQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN------YHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNN---- 234 (382)
T ss_dssp -HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCH----
T ss_pred -HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH----
Confidence 4589999999999999999999999999985432 47899999999999999999999999987666542
Q ss_pred chhhHHHHHHHHHHh-cCCHHHH
Q 024043 191 GVKGHLLNAGICQLC-KGDVVAI 212 (273)
Q Consensus 191 ~~~~~~~~~gl~~l~-~gd~~~A 212 (273)
..+++.|.++.. .|....|
T Consensus 235 ---~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 235 ---SVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp ---HHHHHHHHHHHHTTCSCSHH
T ss_pred ---HHHHHHHHHHHHhcCcchHH
Confidence 367788888887 5554666
No 65
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.51 E-value=4.6e-12 Score=113.06 Aligned_cols=178 Identities=16% Similarity=0.104 Sum_probs=111.9
Q ss_pred CCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHH---HH---------HHHHHHHH
Q 024043 27 SKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLKLESKH---EA---------AQAYVDAA 80 (273)
Q Consensus 27 ~~~~~A~~~~~~a--------------~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~---~a---------a~~~~~~~ 80 (273)
+++++|...|.++ |.+|...|++++|..+|.++..+.. +.. .. ...+...|
T Consensus 74 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a 150 (450)
T 2y4t_A 74 GKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP---SENEEKEAQSQLIKSDEMQRLRSQA 150 (450)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCC---CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---CChhhHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666553 4456666666666666666654321 111 00 11123335
Q ss_pred HHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHH
Q 024043 81 HCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVA 159 (273)
Q Consensus 81 ~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a 159 (273)
.++... ++++|+.+|++++.+... ...++..+|.+|...|++++|+.+|++++++.+.. ..++..+|
T Consensus 151 ~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~l~ 218 (450)
T 2y4t_A 151 LNAFGSGDYTAAIAFLDKILEVCVW------DAELRELRAECFIKEGEPRKAISDLKAASKLKNDN------TEAFYKIS 218 (450)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSC------HHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHH
Confidence 555544 777777777777765432 23578889999999999999999999999886432 46789999
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHHhccchhhhch-----hhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 024043 160 QYAAELEQYHKSIEIYEEIARQSLNNNLLKYGV-----KGHLLNAGICQLCKGDVVAITNALERY 219 (273)
Q Consensus 160 ~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~gl~~l~~gd~~~A~~~~~~~ 219 (273)
.++...|++++|+..|++++...+++....... .......+.++...|++..|...+++.
T Consensus 219 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 283 (450)
T 2y4t_A 219 TLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESV 283 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999999999975544332100000 001122355566666666666666554
No 66
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.51 E-value=1.9e-12 Score=115.35 Aligned_cols=174 Identities=12% Similarity=0.162 Sum_probs=140.9
Q ss_pred cCCHHHHHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHH
Q 024043 46 AKSWDKAGATYVKLANCHLKLES-----------KHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAAR 113 (273)
Q Consensus 46 ~~~~~~A~~~~~~a~~~~~~~~~-----------~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~ 113 (273)
.|+|++|++.|.++++..+..++ ......++.++|.+|... ++++|++++.+++.+....++....+.
T Consensus 17 ~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 96 (434)
T 4b4t_Q 17 EKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKV 96 (434)
T ss_dssp HTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHH
Confidence 34555555555555544332221 123445678899999877 999999999999999999999888999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchh
Q 024043 114 YYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVK 193 (273)
Q Consensus 114 ~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~ 193 (273)
+...+|.++...|++++|+.++++++.+....++......++.++|.++...|+|.+|+.+++++.....+.. .+....
T Consensus 97 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~-~~~~~~ 175 (434)
T 4b4t_Q 97 LKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD-DKPSLV 175 (434)
T ss_dssp HHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS-CSTHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc-cchhHH
Confidence 9999999999999999999999999999999888777889999999999999999999999999975433322 233455
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043 194 GHLLNAGICQLCKGDVVAITNALERYQ 220 (273)
Q Consensus 194 ~~~~~~gl~~l~~gd~~~A~~~~~~~~ 220 (273)
..+...|.++...||+.+|...+++..
T Consensus 176 ~~~~~~~~~~~~~~~~~~A~~~~~~al 202 (434)
T 4b4t_Q 176 DVHLLESKVYHKLRNLAKSKASLTAAR 202 (434)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 678888999999999999999988755
No 67
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.50 E-value=3.7e-12 Score=106.69 Aligned_cols=182 Identities=12% Similarity=0.178 Sum_probs=143.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc----c-CHHHHHHHHHHHHHHHHhcCChh
Q 024043 35 LFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKK----T-SSNEAISCLEQAVNMFCDIGRLS 109 (273)
Q Consensus 35 ~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~----~-~~~eA~~~~~~Al~~~~~~g~~~ 109 (273)
.+...|.++...|++++|+.+|.++++ .++ ..++..+|.+|.. . ++++|+.+|++|+++ +
T Consensus 8 a~~~lg~~~~~~~~~~~A~~~~~~a~~----~~~----~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~--- 72 (273)
T 1ouv_A 8 ELVGLGAKSYKEKDFTQAKKYFEKACD----LKE----NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL----N--- 72 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH----TTC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----T---
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH----CCC----HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC----C---
Confidence 455679999999999999999999987 334 3578889999987 6 999999999999876 3
Q ss_pred HHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHH
Q 024043 110 MAARYYKEIAELYES----EHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAE----LEQYHKSIEIYEEIARQ 181 (273)
Q Consensus 110 ~~a~~l~~lg~~~~~----~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~----~g~y~~A~~~~~~~~~~ 181 (273)
.+.++.++|.+|.. .+++++|+.+|++|++. + ...++..+|.++.. .+++++|+++|++++..
T Consensus 73 -~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~ 143 (273)
T 1ouv_A 73 -YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL----K----YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL 143 (273)
T ss_dssp -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----T----CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT
T ss_pred -CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc----C----CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc
Confidence 35789999999999 99999999999999986 2 24679999999999 99999999999999752
Q ss_pred HhccchhhhchhhHHHHHHHHHHh----cCCHHHHHHHHHHHH---------HHHHHHhh--cCHhHHHHHHHhhhccCC
Q 024043 182 SLNNNLLKYGVKGHLLNAGICQLC----KGDVVAITNALERYQ---------DIAASMDE--EDIAKFTDVVKEFDSMTP 246 (273)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~gl~~l~----~gd~~~A~~~~~~~~---------~ll~a~~~--~d~~~~~~~~~~~~~~~~ 246 (273)
+ ....+.++|.++.. .+|+.+|...+++.. .+-..+.. +....+.+++..|.....
T Consensus 144 --~-------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~ 214 (273)
T 1ouv_A 144 --N-------DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACE 214 (273)
T ss_dssp --T-------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHH
T ss_pred --C-------cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHh
Confidence 2 22356788988887 899999999998754 11112222 124456666666666666
Q ss_pred Cch
Q 024043 247 LDP 249 (273)
Q Consensus 247 ld~ 249 (273)
++|
T Consensus 215 ~~~ 217 (273)
T 1ouv_A 215 LEN 217 (273)
T ss_dssp TTC
T ss_pred CCC
Confidence 555
No 68
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.49 E-value=1.8e-12 Score=115.79 Aligned_cols=233 Identities=15% Similarity=0.082 Sum_probs=166.8
Q ss_pred HhhHHHHHHHHHHhhccc---------cCC-CCCHHHHHHHHHHH-----------------------------HHHHHH
Q 024043 5 IARAEEFEKKAEKKLNGW---------GLF-GSKYEDAADLFDKA-----------------------------ANSFKL 45 (273)
Q Consensus 5 ~~~a~~l~~~Aek~~k~~---------~~~-~~~~~~A~~~~~~a-----------------------------~~~~~~ 45 (273)
.++|.+++.++-+.-... .+. .+++++|...|.++ |.++..
T Consensus 76 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 155 (450)
T 2y4t_A 76 SKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFG 155 (450)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777776654210 112 37888888888765 445888
Q ss_pred cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHh
Q 024043 46 AKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYES 124 (273)
Q Consensus 46 ~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~ 124 (273)
.|++++|+.+|.++...... ...++..+|.+|... ++++|+.+|++++...... ..++..+|.++..
T Consensus 156 ~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~ 223 (450)
T 2y4t_A 156 SGDYTAAIAFLDKILEVCVW------DAELRELRAECFIKEGEPRKAISDLKAASKLKNDN------TEAFYKISTLYYQ 223 (450)
T ss_dssp HTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSC------HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH
Confidence 99999999999999876421 246788899999877 9999999999999885432 4689999999999
Q ss_pred cCCHHHHHHHHHHHHHHHhccCCcccH------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHH
Q 024043 125 EHNIEQTIVFFEKAADMFQNEEVTTSA------NQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLN 198 (273)
Q Consensus 125 ~g~~~~A~~~y~~Al~~~~~~~~~~~~------~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (273)
.|++++|+.+|++++.+.......... ...+..+|.++...|++++|+.+|++++...+.++. .....+..
T Consensus 224 ~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~---~~~~~~~~ 300 (450)
T 2y4t_A 224 LGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAE---YTVRSKER 300 (450)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHH---HHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchH---HHHHHHHH
Confidence 999999999999999875543211100 011244599999999999999999999875554321 12346678
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH-----------HHHHHHhhcCHhHHHHHHHhhhccCCCchhHHHH
Q 024043 199 AGICQLCKGDVVAITNALERYQ-----------DIAASMDEEDIAKFTDVVKEFDSMTPLDPWKTTL 254 (273)
Q Consensus 199 ~gl~~l~~gd~~~A~~~~~~~~-----------~ll~a~~~~d~~~~~~~~~~~~~~~~ld~~~~~~ 254 (273)
+|.++...|++..|...+++.. .+...+ .....+.+++..|..+..++|-...+
T Consensus 301 l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~--~~~~~~~~A~~~~~~al~~~p~~~~~ 365 (450)
T 2y4t_A 301 ICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAY--LIEEMYDEAIQDYETAQEHNENDQQI 365 (450)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH--HHTTCHHHHHHHHHHHHTTSSSCHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH--HHhcCHHHHHHHHHHHHHhCcchHHH
Confidence 8999999999999999988864 122222 11234566666666666665554433
No 69
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.48 E-value=2.5e-12 Score=107.01 Aligned_cols=198 Identities=14% Similarity=0.031 Sum_probs=155.0
Q ss_pred hHhhHHHHHHHHHHhhcc-c-c-------CC-CCCHHHHHHHHHHH-----------------HHHHHHcCCHHHHHHHH
Q 024043 4 QIARAEEFEKKAEKKLNG-W-G-------LF-GSKYEDAADLFDKA-----------------ANSFKLAKSWDKAGATY 56 (273)
Q Consensus 4 ~~~~a~~l~~~Aek~~k~-~-~-------~~-~~~~~~A~~~~~~a-----------------~~~~~~~~~~~~A~~~~ 56 (273)
..++|.+++.++-+.-.. . . ++ .+++++|...|.++ |.+|...|++++|+.+|
T Consensus 18 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~ 97 (272)
T 3u4t_A 18 NYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQY 97 (272)
T ss_dssp CHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 367888888888775531 1 1 12 38899998888764 67888999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHH-HHHHhcCCHHHHHHH
Q 024043 57 VKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIA-ELYESEHNIEQTIVF 134 (273)
Q Consensus 57 ~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg-~~~~~~g~~~~A~~~ 134 (273)
.++.+..... ..++..+|.+|... ++++|+.+|++++.+.. ....++.++| .++.. +++++|+.+
T Consensus 98 ~~a~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~l~~~~~~~-~~~~~A~~~ 164 (272)
T 3u4t_A 98 QAAVDRDTTR------LDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT------TDPKVFYELGQAYYYN-KEYVKADSS 164 (272)
T ss_dssp HHHHHHSTTC------THHHHHHHHHHHHTTCHHHHHHHHGGGCCSSC------CCHHHHHHHHHHHHHT-TCHHHHHHH
T ss_pred HHHHhcCccc------HHHHHHHHHHHHHccCHHHHHHHHHHHhhcCC------CcHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 9999875432 35788999999887 99999999999988722 2256889999 66666 799999999
Q ss_pred HHHHHHHHhccCCcccHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHhccchh-hhchhhHHHHHHHHHHhcCCHH
Q 024043 135 FEKAADMFQNEEVTTSANQCKQKVAQYAAELEQ---YHKSIEIYEEIARQSLNNNLL-KYGVKGHLLNAGICQLCKGDVV 210 (273)
Q Consensus 135 y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~---y~~A~~~~~~~~~~~~~~~~~-~~~~~~~~~~~gl~~l~~gd~~ 210 (273)
|++++++.+.. ..++..+|.++..+|+ +++|+..|++++......+.. .......+..+|.++...|++.
T Consensus 165 ~~~a~~~~p~~------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 165 FVKVLELKPNI------YIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHSTTC------HHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhCccc------hHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 99999986543 4678889999999998 999999999998654332211 1223457778899999999999
Q ss_pred HHHHHHHHHH
Q 024043 211 AITNALERYQ 220 (273)
Q Consensus 211 ~A~~~~~~~~ 220 (273)
+|...+++..
T Consensus 239 ~A~~~~~~al 248 (272)
T 3u4t_A 239 KADAAWKNIL 248 (272)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999864
No 70
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.48 E-value=2.6e-12 Score=118.94 Aligned_cols=197 Identities=14% Similarity=0.117 Sum_probs=157.8
Q ss_pred HhhHHHHHHHHHHhhcc----c-----cCC-CCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHH
Q 024043 5 IARAEEFEKKAEKKLNG----W-----GLF-GSKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLA 60 (273)
Q Consensus 5 ~~~a~~l~~~Aek~~k~----~-----~~~-~~~~~~A~~~~~~a--------------~~~~~~~~~~~~A~~~~~~a~ 60 (273)
.++|.+++.++-+.... + .++ .|++++|..+|.++ +.+|...|++++|+..|.++.
T Consensus 355 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 434 (597)
T 2xpi_A 355 KNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAA 434 (597)
T ss_dssp HHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 56778888777654321 1 122 38999999999875 567888999999999999998
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043 61 NCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAA 139 (273)
Q Consensus 61 ~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al 139 (273)
..... -..++..++.+|... ++++|+++|++++++... -..++..+|.++...|++++|+++|++++
T Consensus 435 ~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 502 (597)
T 2xpi_A 435 RLFQG------THLPYLFLGMQHMQLGNILLANEYLQSSYALFQY------DPLLLNELGVVAFNKSDMQTAINHFQNAL 502 (597)
T ss_dssp HTTTT------CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhCcc------chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 76432 235778889998777 999999999999987432 23579999999999999999999999999
Q ss_pred HHHhccCC-cccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHH
Q 024043 140 DMFQNEEV-TTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALER 218 (273)
Q Consensus 140 ~~~~~~~~-~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~ 218 (273)
++.+..+. +.....++..+|.++...|++++|++.|++++...+.+ ...+..++.++...|++++|.+.+++
T Consensus 503 ~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~ 575 (597)
T 2xpi_A 503 LLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTND-------ANVHTAIALVYLHKKIPGLAITHLHE 575 (597)
T ss_dssp HHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCC-------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 99887543 33336789999999999999999999999998655443 24677889999999999999999988
Q ss_pred HH
Q 024043 219 YQ 220 (273)
Q Consensus 219 ~~ 220 (273)
..
T Consensus 576 ~l 577 (597)
T 2xpi_A 576 SL 577 (597)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 71
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.47 E-value=8.1e-13 Score=107.91 Aligned_cols=166 Identities=14% Similarity=0.146 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCCh
Q 024043 30 EDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRL 108 (273)
Q Consensus 30 ~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~ 108 (273)
+-....+...|..+...|++++|+..|.+++..... ...++..+|.++... ++++|+.+|++++.+...
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---- 89 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE------DAIPYINFANLLSSVNELERALAFYDKALELDSS---- 89 (243)
T ss_dssp ----------------------CCTTHHHHHTTCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc----
Confidence 344556667799999999999999999999874321 256788899999777 999999999999987543
Q ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchh
Q 024043 109 SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLL 188 (273)
Q Consensus 109 ~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~ 188 (273)
...++..+|.++...|++++|+.+|++++++.... ..++..+|.++...|++++|+.+|++++...+.+
T Consensus 90 --~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--- 158 (243)
T 2q7f_A 90 --AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN------GDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND--- 158 (243)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCS------HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC---
T ss_pred --chHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc---
Confidence 25688999999999999999999999999986432 3578999999999999999999999998654433
Q ss_pred hhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043 189 KYGVKGHLLNAGICQLCKGDVVAITNALERYQ 220 (273)
Q Consensus 189 ~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~ 220 (273)
...+..+|.++...|++..|...+++..
T Consensus 159 ----~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 186 (243)
T 2q7f_A 159 ----TEARFQFGMCLANEGMLDEALSQFAAVT 186 (243)
T ss_dssp ----HHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2356778999999999999999998864
No 72
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.47 E-value=1.1e-13 Score=106.50 Aligned_cols=130 Identities=11% Similarity=0.079 Sum_probs=106.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHH
Q 024043 39 AANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKE 117 (273)
Q Consensus 39 a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~ 117 (273)
.|.+++..|++++|+..+.++.... ......+..+|.+|... ++++|+++|++++++.+.. +.++.+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~------p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~------~~a~~~ 70 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP------RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD------PKAHRF 70 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH------HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHH
Confidence 5778888899999999998877643 44456777899999887 9999999999999986543 569999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHH-HHHHHHHhccc
Q 024043 118 IAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIY-EEIARQSLNNN 186 (273)
Q Consensus 118 lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~-~~~~~~~~~~~ 186 (273)
+|.++...|++++|+.+|++|+++.+.. ..++.++|.++...|++++|++.| ++++...++++
T Consensus 71 lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~ 134 (150)
T 4ga2_A 71 LGLLYELEENTDKAVECYRRSVELNPTQ------KDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSP 134 (150)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHcCchHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCH
Confidence 9999999999999999999999985432 468999999999999999988865 88887766653
No 73
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.47 E-value=7.1e-13 Score=98.97 Aligned_cols=106 Identities=14% Similarity=0.184 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCC-
Q 024043 70 HEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEV- 147 (273)
Q Consensus 70 ~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~- 147 (273)
.+.|.++.++|+++... ++++|+++|++|+++.+.. +.++.++|.+|..+|++++|+++|++|+++.+....
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~------~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 78 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSN------ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRAD 78 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchh
Confidence 45677778888887666 8888888888888775432 457888888888888888888888888888776543
Q ss_pred cccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 024043 148 TTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQ 181 (273)
Q Consensus 148 ~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~ 181 (273)
....+.++.++|.++..+|+|++|+++|++++..
T Consensus 79 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 79 YKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3455677888888888888888888888887643
No 74
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.46 E-value=1.8e-12 Score=102.10 Aligned_cols=162 Identities=11% Similarity=0.078 Sum_probs=129.7
Q ss_pred HHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCccc
Q 024043 72 AAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTS 150 (273)
Q Consensus 72 aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~ 150 (273)
.+.+|.++|.+|... ++++|+++|++++++.+.. +.++..+|.++...|++++|+..+.+++......
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~----- 72 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNN------VETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS----- 72 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC-----
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchh-----
Confidence 467899999999877 9999999999999986543 4689999999999999999999999998875432
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHHHH--------
Q 024043 151 ANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDI-------- 222 (273)
Q Consensus 151 ~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~l-------- 222 (273)
..++..+|.++...++++.|++.+.++....+.+ ...+..+|.++...|++++|...+++...+
T Consensus 73 -~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 144 (184)
T 3vtx_A 73 -AEAYYILGSANFMIDEKQAAIDALQRAIALNTVY-------ADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAY 144 (184)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-------hHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHH
Confidence 4678899999999999999999999998655543 235678899999999999999999986511
Q ss_pred -HHHHhhcCHhHHHHHHHhhhccCCCchhHH
Q 024043 223 -AASMDEEDIAKFTDVVKEFDSMTPLDPWKT 252 (273)
Q Consensus 223 -l~a~~~~d~~~~~~~~~~~~~~~~ld~~~~ 252 (273)
.-+........+.+++..|.....+||-..
T Consensus 145 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 145 QSIGLAYEGKGLRDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhCCccCH
Confidence 001112224457788888888888888654
No 75
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.46 E-value=2.2e-12 Score=105.21 Aligned_cols=164 Identities=15% Similarity=0.218 Sum_probs=125.8
Q ss_pred hHHHHHHHHHHhhccccCCCCCHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHH
Q 024043 7 RAEEFEKKAEKKLNGWGLFGSKYEDAADLFDK---------------AANSFKLAKSWDKAGATYVKLANCHLKLESKHE 71 (273)
Q Consensus 7 ~a~~l~~~Aek~~k~~~~~~~~~~~A~~~~~~---------------a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 71 (273)
+|..++..|.-.++ .++|++|...|.+ .|.++...|++++|+.+|.+++.... .
T Consensus 6 ~~~~~~~~g~~~~~-----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p------~ 74 (228)
T 4i17_A 6 DPNQLKNEGNDALN-----AKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY------N 74 (228)
T ss_dssp CHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC------S
T ss_pred CHHHHHHHHHHHHH-----ccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc------c
Confidence 45556666655544 2355555555554 47788899999999999999996532 2
Q ss_pred HHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcc
Q 024043 72 AAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGR-LSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTT 149 (273)
Q Consensus 72 aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~-~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~ 149 (273)
...++..+|.+|... ++++|+.+|++++.+.+.... ....+.++.++|.++...|++++|+.+|++|+++.+. .
T Consensus 75 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----~ 150 (228)
T 4i17_A 75 LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSK----K 150 (228)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCH----H
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCC----c
Confidence 456788999999888 999999999999998765432 2345678999999999999999999999999987321 0
Q ss_pred cHHHHHHHHHHHHHHhcCH---------------------------HHHHHHHHHHHHHHhcc
Q 024043 150 SANQCKQKVAQYAAELEQY---------------------------HKSIEIYEEIARQSLNN 185 (273)
Q Consensus 150 ~~~~~~~~~a~~~~~~g~y---------------------------~~A~~~~~~~~~~~~~~ 185 (273)
....++..+|.++...|+. ++|+.+|++++...+++
T Consensus 151 ~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~ 213 (228)
T 4i17_A 151 WKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNR 213 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 0357888999999888887 88888888887665554
No 76
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.45 E-value=1.1e-12 Score=118.13 Aligned_cols=174 Identities=11% Similarity=-0.017 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCCh
Q 024043 33 ADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLES---KHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRL 108 (273)
Q Consensus 33 ~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~ 108 (273)
+..|+..|.++...|++++|+++|.+|+++.+.... ....+.+|.++|.+|... ++++|+.+|++++.+.+....+
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 456778899999999999999999999999876542 345677899999999888 9999999999999999887653
Q ss_pred h--HHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHH---HhcCHHHHHHHHHHHHHH
Q 024043 109 S--MAARYYKEIAELYESE--HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAA---ELEQYHKSIEIYEEIARQ 181 (273)
Q Consensus 109 ~--~~a~~l~~lg~~~~~~--g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~---~~g~y~~A~~~~~~~~~~ 181 (273)
. ..+.++.++|.++... ++|++|+++|++|+++.+.. ..++..+|.++. ..+++++|++.|++++..
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~------~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l 204 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKN------PEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL 204 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc
Confidence 2 3467788888777654 57999999999999985432 244556665544 346777888888888755
Q ss_pred HhccchhhhchhhHHHHHHHHH----HhcCCHHHHHHHHHHH
Q 024043 182 SLNNNLLKYGVKGHLLNAGICQ----LCKGDVVAITNALERY 219 (273)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~gl~~----l~~gd~~~A~~~~~~~ 219 (273)
.+.+. ..+..+|.++ ...|++..|..++++.
T Consensus 205 ~p~~~-------~~~~~l~~~~~~~~~~~~~~~~a~~~~~~a 239 (472)
T 4g1t_A 205 NPDNQ-------YLKVLLALKLHKMREEGEEEGEGEKLVEEA 239 (472)
T ss_dssp CSSCH-------HHHHHHHHHHHHCC------CHHHHHHHHH
T ss_pred CCcch-------HHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 44332 1222333322 2344556666666654
No 77
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.44 E-value=3.8e-12 Score=121.55 Aligned_cols=133 Identities=10% Similarity=0.159 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCC
Q 024043 69 KHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEV 147 (273)
Q Consensus 69 ~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~ 147 (273)
...-+.+|.++|.+|... ++++|+.+|++|+++.... +.++.++|.+|..+|++++|+.+|++|+++...
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~------~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~--- 75 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF------AAAHSNLASVLQQQGKLQEALMHYKEAIRISPT--- 75 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---
Confidence 345678999999999888 9999999999999986543 568999999999999999999999999998543
Q ss_pred cccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043 148 TTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ 220 (273)
Q Consensus 148 ~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~ 220 (273)
...++.++|.++..+|++++|++.|++++...+++ ...+.++|.++...|++++|..++++..
T Consensus 76 ---~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~-------~~a~~~Lg~~~~~~g~~~eAi~~~~~Al 138 (723)
T 4gyw_A 76 ---FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF-------ADAHSNLASIHKDSGNIPEAIASYRTAL 138 (723)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 25789999999999999999999999998765543 3467899999999999999999999865
No 78
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.44 E-value=1.2e-11 Score=111.86 Aligned_cols=133 Identities=10% Similarity=0.039 Sum_probs=92.2
Q ss_pred HHHHHHHHHHhc---c-CHHHHHHHHHHHHHHHHhc-----CC---hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 024043 74 QAYVDAAHCYKK---T-SSNEAISCLEQAVNMFCDI-----GR---LSMAARYYKEIAELYESEHNIEQTIVFFEKAADM 141 (273)
Q Consensus 74 ~~~~~~~~~~~~---~-~~~eA~~~~~~Al~~~~~~-----g~---~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~ 141 (273)
..+...|.++.. . ++++|+.+|++++..+... ++ ....+.++..+|.++...|++++|+.+|+++++.
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 266 (514)
T 2gw1_A 187 DKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL 266 (514)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 344444554432 3 7788888888888754322 11 1456778888888888888888888888888876
Q ss_pred HhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043 142 FQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ 220 (273)
Q Consensus 142 ~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~ 220 (273)
... ..++..+|.++...|++++|+..|++++...+.+ ...+..++.++...|++..|...+++..
T Consensus 267 ~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 331 (514)
T 2gw1_A 267 FPR-------VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNN-------SSVYYHRGQMNFILQNYDQAGKDFDKAK 331 (514)
T ss_dssp CCC-------HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTC-------THHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred Ccc-------HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCC-------HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 432 5677788888888888888888888876433322 2355667778888888888888877754
No 79
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.44 E-value=5.6e-13 Score=121.45 Aligned_cols=168 Identities=12% Similarity=0.076 Sum_probs=137.3
Q ss_pred CCH-HHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc------
Q 024043 27 SKY-EDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKK------ 85 (273)
Q Consensus 27 ~~~-~~A~~~~~~a--------------~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~------ 85 (273)
++| ++|..+|.++ |.+|...|++++|+.+|.+++++. .+ ..++.++|.++..
T Consensus 116 g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~----~~~~~~lg~~~~~~~~~~~ 188 (474)
T 4abn_A 116 PDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC---KN----KVSLQNLSMVLRQLQTDSG 188 (474)
T ss_dssp SSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC---CC----HHHHHHHHHHHTTCCCSCH
T ss_pred cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CC----HHHHHHHHHHHHHhccCCh
Confidence 899 9999999876 678999999999999999999874 22 3788999999965
Q ss_pred ----cCHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHHHhccCCcccHHH
Q 024043 86 ----TSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE--------HNIEQTIVFFEKAADMFQNEEVTTSANQ 153 (273)
Q Consensus 86 ----~~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~--------g~~~~A~~~y~~Al~~~~~~~~~~~~~~ 153 (273)
.++++|+.+|++|+.+.... +.++.++|.++... |++++|+.+|++|+++.... .....
T Consensus 189 ~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~ 259 (474)
T 4abn_A 189 DEHSRHVMDSVRQAKLAVQMDVLD------GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKA---SSNPD 259 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGG---GGCHH
T ss_pred hhhhhhHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCc---ccCHH
Confidence 47899999999999986543 45899999999998 99999999999999985421 13357
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHH
Q 024043 154 CKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALE 217 (273)
Q Consensus 154 ~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~ 217 (273)
++.++|.++..+|+|++|++.|++++...+++. ..+..++.++...|++.+|.+.+.
T Consensus 260 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-------~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 260 LHLNRATLHKYEESYGEALEGFSQAAALDPAWP-------EPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-------HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 899999999999999999999999987655542 356677777777777666655443
No 80
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.43 E-value=5.2e-12 Score=94.19 Aligned_cols=109 Identities=17% Similarity=0.239 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcC-
Q 024043 29 YEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIG- 106 (273)
Q Consensus 29 ~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g- 106 (273)
..+++..+...|+.+...|+|++|+.+|.+|+++... -+.++.++|.+|... ++++|+++|++|+++.+...
T Consensus 4 ~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~------~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~ 77 (127)
T 4gcn_A 4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS------NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRA 77 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccch
Confidence 3456677888999999999999999999999988432 256899999999888 99999999999999998764
Q ss_pred ChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 024043 107 RLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQ 143 (273)
Q Consensus 107 ~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~ 143 (273)
.....+.++.++|.++..+|++++|+++|++|+.+.+
T Consensus 78 ~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 78 DYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFR 114 (127)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 5677899999999999999999999999999998754
No 81
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.42 E-value=3.5e-13 Score=121.33 Aligned_cols=155 Identities=9% Similarity=0.040 Sum_probs=113.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHHHHhcCCHHHHHH
Q 024043 58 KLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGR---LSMAARYYKEIAELYESEHNIEQTIV 133 (273)
Q Consensus 58 ~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~---~~~~a~~l~~lg~~~~~~g~~~~A~~ 133 (273)
..+....+..+....+..|+.+|.++... ++++|+++|++|+++.+..+. ....+.++.++|.+|..+|++++|+.
T Consensus 36 ~~~~~~~~~~~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~ 115 (472)
T 4g1t_A 36 DKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQI 115 (472)
T ss_dssp HHHHHHTTSCC---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHH
Confidence 33333334555666788999999999777 999999999999999886543 33457789999999999999999999
Q ss_pred HHHHHHHHHhccCCc--ccHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHh---c
Q 024043 134 FFEKAADMFQNEEVT--TSANQCKQKVAQYAAELE--QYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLC---K 206 (273)
Q Consensus 134 ~y~~Al~~~~~~~~~--~~~~~~~~~~a~~~~~~g--~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~---~ 206 (273)
+|++++++.+....+ ...+.++...|.++...| +|++|+++|++++...++++ ..+..++.++.. .
T Consensus 116 ~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~-------~~~~~~~~~~~~l~~~ 188 (472)
T 4g1t_A 116 YVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNP-------EFTSGLAIASYRLDNW 188 (472)
T ss_dssp HHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCH-------HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHhcCc
Confidence 999999999876432 344677888888777654 79999999999987766553 234444544333 3
Q ss_pred CCHHHHHHHHHHH
Q 024043 207 GDVVAITNALERY 219 (273)
Q Consensus 207 gd~~~A~~~~~~~ 219 (273)
++...|.+.+++.
T Consensus 189 ~~~~~al~~~~~a 201 (472)
T 4g1t_A 189 PPSQNAIDPLRQA 201 (472)
T ss_dssp CCCCCTHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 5555555555543
No 82
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.42 E-value=1.3e-11 Score=104.99 Aligned_cols=168 Identities=10% Similarity=-0.011 Sum_probs=132.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHH
Q 024043 34 DLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAA 112 (273)
Q Consensus 34 ~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a 112 (273)
+.+...|..+...|++++|+..|.++...... ...++..+|.++... ++++|+.++++++.+.... .
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------~ 89 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPE------REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD------I 89 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------H
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCC------H
Confidence 34445688899999999999999999886422 346777889999877 9999999999999874332 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCc-------------------------------------------c
Q 024043 113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVT-------------------------------------------T 149 (273)
Q Consensus 113 ~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~-------------------------------------------~ 149 (273)
.++..+|.++...|++++|+.+|+++++..+..... .
T Consensus 90 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 169 (327)
T 3cv0_A 90 AVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP 169 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC
Confidence 588899999999999999999999988764332111 0
Q ss_pred cHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043 150 SANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ 220 (273)
Q Consensus 150 ~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~ 220 (273)
....++..+|.++...|++++|+.+|++++...+.+ ...+..+|.++...|++.+|...+++..
T Consensus 170 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 233 (327)
T 3cv0_A 170 NDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDD-------AQLWNKLGATLANGNRPQEALDAYNRAL 233 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 113567888999999999999999999997654433 2356788999999999999999988864
No 83
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.41 E-value=1.3e-11 Score=112.80 Aligned_cols=146 Identities=10% Similarity=0.021 Sum_probs=127.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHH-cC-CHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhc--CChhHHHHH
Q 024043 40 ANSFKLAKSWDKAGATYVKLANCHLK-LE-SKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI--GRLSMAARY 114 (273)
Q Consensus 40 ~~~~~~~~~~~~A~~~~~~a~~~~~~-~~-~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~--g~~~~~a~~ 114 (273)
+..++..|+|++|...|++++++.++ +| +....+.++.++|.+|... ++++|+.+++++++++.+. .+....|..
T Consensus 316 a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~ 395 (490)
T 3n71_A 316 IDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMA 395 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 34577899999999999999999874 45 5678999999999999887 9999999999999999764 456778999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc-C-CcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043 115 YKEIAELYESEHNIEQTIVFFEKAADMFQNE-E-VTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN 185 (273)
Q Consensus 115 l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~-~-~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~ 185 (273)
++++|.+|..+|++++|..+|++|+++++.. | ++.....++..++.++.+++.|.+|...|.++......+
T Consensus 396 l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~ 468 (490)
T 3n71_A 396 VMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNN 468 (490)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999875 4 356677888999999999999999999999986544443
No 84
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.41 E-value=3.4e-12 Score=115.52 Aligned_cols=174 Identities=14% Similarity=0.098 Sum_probs=91.0
Q ss_pred CCHHHHHHHHHHH-------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHH
Q 024043 27 SKYEDAADLFDKA-------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAI 92 (273)
Q Consensus 27 ~~~~~A~~~~~~a-------------~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~ 92 (273)
+++++|..+|.++ |.++...|++++|+..|.++....... ..++..+|.++... ++++|+
T Consensus 251 ~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~ 324 (514)
T 2gw1_A 251 NDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNN------SSVYYHRGQMNFILQNYDQAG 324 (514)
T ss_dssp SCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTC------THHHHHHHHHHHHTTCTTHHH
T ss_pred CCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCC------HHHHHHHHHHHHHhCCHHHHH
Confidence 6777777766653 777777777777777777766543211 22455555555544 556666
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHH
Q 024043 93 SCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSI 172 (273)
Q Consensus 93 ~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~ 172 (273)
.+|++++.+.... ..++..+|.++...|++++|+.+|+++++..... ..++..+|.++...|++++|+
T Consensus 325 ~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~ 392 (514)
T 2gw1_A 325 KDFDKAKELDPEN------IFPYIQLACLAYRENKFDDCETLFSEAKRKFPEA------PEVPNFFAEILTDKNDFDKAL 392 (514)
T ss_dssp HHHHHHHHTCSSC------SHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTC------SHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhChhh------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccC------HHHHHHHHHHHHHCCCHHHHH
Confidence 6666655543221 1245555555555555555555555555543321 134555555555555555555
Q ss_pred HHHHHHHHHHhccchhhhchhhHHHHHHHHHHh---cCCHHHHHHHHHHH
Q 024043 173 EIYEEIARQSLNNNLLKYGVKGHLLNAGICQLC---KGDVVAITNALERY 219 (273)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~---~gd~~~A~~~~~~~ 219 (273)
.+|++++...+.++...... ..+..+|.++.. .|++..|...+++.
T Consensus 393 ~~~~~a~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~A~~~~~~a 441 (514)
T 2gw1_A 393 KQYDLAIELENKLDGIYVGI-APLVGKATLLTRNPTVENFIEATNLLEKA 441 (514)
T ss_dssp HHHHHHHHHHHTSSSCSSCS-HHHHHHHHHHHTSCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccchHHHHH-HHHHHHHHHHhhhhhcCCHHHHHHHHHHH
Confidence 55555554433332211111 123444555555 55555555555543
No 85
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.41 E-value=4.4e-12 Score=102.57 Aligned_cols=162 Identities=11% Similarity=0.102 Sum_probs=111.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcC
Q 024043 38 KAANSFKLAKSWDKAGATYVKLANCHLKLES----------KHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIG 106 (273)
Q Consensus 38 ~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~----------~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g 106 (273)
.-|..+...|++++|+.+|.+++.+...... .........++|.+|... ++++|+.+|++++.+.+..
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~- 87 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNN- 87 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC-
Confidence 3466677778888888888888776432110 001111222388888777 9999999999999886543
Q ss_pred ChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHhc
Q 024043 107 RLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQ--YHKSIEIYEEIARQSLN 184 (273)
Q Consensus 107 ~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~--y~~A~~~~~~~~~~~~~ 184 (273)
..++.++|.++...|++++|+.+|++++++.+.. ..++..+|.++...|+ ...+...|.++..
T Consensus 88 -----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~------~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~---- 152 (208)
T 3urz_A 88 -----VDCLEACAEMQVCRGQEKDALRMYEKILQLEADN------LAANIFLGNYYYLTAEQEKKKLETDYKKLSS---- 152 (208)
T ss_dssp -----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHHHHHHHHHHHHC---C----
T ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC----
Confidence 4588899999999999999999999999885432 4678889988877664 4556666666531
Q ss_pred cchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 024043 185 NNLLKYGVKGHLLNAGICQLCKGDVVAITNALERY 219 (273)
Q Consensus 185 ~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~ 219 (273)
.+ .....+++.|+++...|++.+|..+|++.
T Consensus 153 ~~----~~~~a~~~~g~~~~~~~~~~~A~~~~~~a 183 (208)
T 3urz_A 153 PT----KMQYARYRDGLSKLFTTRYEKARNSLQKV 183 (208)
T ss_dssp CC----HHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred CC----chhHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 10 11123456788888888888888888875
No 86
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.39 E-value=1.1e-11 Score=96.23 Aligned_cols=134 Identities=8% Similarity=0.026 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHH
Q 024043 34 DLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAA 112 (273)
Q Consensus 34 ~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a 112 (273)
..+...|.++...|++++|..++.++...... ...++..+|.++... ++++|+.++++++.+.... .
T Consensus 43 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------~ 110 (186)
T 3as5_A 43 DVALHLGIAYVKTGAVDRGTELLERSLADAPD------NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN------F 110 (186)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------H
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHh------H
Confidence 34555688999999999999999999887421 245778889998777 9999999999999875432 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043 113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN 185 (273)
Q Consensus 113 ~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~ 185 (273)
.++..+|.++...|++++|+.+++++++..... ..++..+|.++...|++++|+.+|++++...+++
T Consensus 111 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 177 (186)
T 3as5_A 111 NVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE------GKVHRAIAFSYEQMGRHEEALPHFKKANELDEGA 177 (186)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccc------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 688999999999999999999999999885322 4678999999999999999999999998766655
No 87
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.39 E-value=6.4e-11 Score=98.33 Aligned_cols=181 Identities=6% Similarity=-0.112 Sum_probs=127.0
Q ss_pred HhhHHHHHHHHHHhhccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 024043 5 IARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYK 84 (273)
Q Consensus 5 ~~~a~~l~~~Aek~~k~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~ 84 (273)
.++|.+++.++-+... .+...-...+...|.++...|++++|+.+|.+++.+... ...++..+|.+|.
T Consensus 21 ~~~A~~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~ 88 (275)
T 1xnf_A 21 QEVILARMEQILASRA------LTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD------MPEVFNYLGIYLT 88 (275)
T ss_dssp HHHHHHHHHHHHTSSC------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccc------ccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC------cHHHHHHHHHHHH
Confidence 4555555555544321 123344566777899999999999999999999987422 2457888999998
Q ss_pred cc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHH
Q 024043 85 KT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAA 163 (273)
Q Consensus 85 ~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~ 163 (273)
.. ++++|+.+|++++.+.... ..++..+|.++...|++++|+.+|++++++.+... .....+ .+..
T Consensus 89 ~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~------~~~~~~-~~~~ 155 (275)
T 1xnf_A 89 QAGNFDAAYEAFDSVLELDPTY------NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP------FRSLWL-YLAE 155 (275)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTC------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHH-HHHH
T ss_pred HccCHHHHHHHHHHHHhcCccc------cHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh------HHHHHH-HHHH
Confidence 77 9999999999999986543 36899999999999999999999999999765332 122222 2346
Q ss_pred HhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHH
Q 024043 164 ELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALER 218 (273)
Q Consensus 164 ~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~ 218 (273)
..|++++|+..|++++.....+. .....+.+++..++...|...+++
T Consensus 156 ~~~~~~~A~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~a~~~~~~ 202 (275)
T 1xnf_A 156 QKLDEKQAKEVLKQHFEKSDKEQ--------WGWNIVEFYLGNISEQTLMERLKA 202 (275)
T ss_dssp HHHCHHHHHHHHHHHHHHSCCCS--------THHHHHHHHTTSSCHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCCcch--------HHHHHHHHHHHhcCHHHHHHHHHH
Confidence 67899999999988875433321 112234445556666555555543
No 88
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.38 E-value=1.5e-11 Score=94.97 Aligned_cols=115 Identities=11% Similarity=0.070 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcC------ChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 024043 72 AAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIG------RLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQN 144 (273)
Q Consensus 72 aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g------~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~ 144 (273)
.+..+.+.|+.+... ++++|+.+|++|+.+-+... ....-+.+|.++|.++..+|+|++|+.+|.+|+++|..
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 455666777777666 88888888888888877621 11123559999999999999999999999999999655
Q ss_pred cCC-cccHHHHH----HHHHHHHHHhcCHHHHHHHHHHHHHHHhccc
Q 024043 145 EEV-TTSANQCK----QKVAQYAAELEQYHKSIEIYEEIARQSLNNN 186 (273)
Q Consensus 145 ~~~-~~~~~~~~----~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~ 186 (273)
.+. .+.-..+| .+.|.++..+|+|++|+..|++++...+++.
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~ 136 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK 136 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcH
Confidence 433 23445778 9999999999999999999999998777764
No 89
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.37 E-value=1.5e-11 Score=98.85 Aligned_cols=138 Identities=15% Similarity=0.141 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCCh
Q 024043 30 EDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRL 108 (273)
Q Consensus 30 ~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~ 108 (273)
.++..+|. .|..+...|++++|+.+|.++. .. .+.++.++|.+|... ++++|+.+|++++.+...
T Consensus 4 ~~~~~~~~-~g~~~~~~~~~~~A~~~~~~a~------~~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---- 69 (213)
T 1hh8_A 4 VEAISLWN-EGVLAADKKDWKGALDAFSAVQ------DP---HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH---- 69 (213)
T ss_dssp HHHHHHHH-HHHHHHHTTCHHHHHHHHHTSS------SC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----
T ss_pred HHHHHHHH-HHHHHHHhCCHHHHHHHHHHHc------CC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc----
Confidence 45555554 5888889999999999999984 11 246899999999877 999999999999988533
Q ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC----------CcccHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 024043 109 SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEE----------VTTSANQCKQKVAQYAAELEQYHKSIEIYEEI 178 (273)
Q Consensus 109 ~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~----------~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~ 178 (273)
.+.++.++|.++...|++++|+.+|++++++.+... .......++..+|.++..+|++++|++.|+++
T Consensus 70 --~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 70 --LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 256899999999999999999999999999887655 44556788999999999999999999999999
Q ss_pred HHHHh
Q 024043 179 ARQSL 183 (273)
Q Consensus 179 ~~~~~ 183 (273)
+...+
T Consensus 148 l~~~p 152 (213)
T 1hh8_A 148 TSMKS 152 (213)
T ss_dssp HTTCC
T ss_pred HHcCc
Confidence 75443
No 90
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.37 E-value=4.2e-11 Score=99.42 Aligned_cols=153 Identities=11% Similarity=-0.029 Sum_probs=121.0
Q ss_pred cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHh
Q 024043 46 AKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYES 124 (273)
Q Consensus 46 ~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~ 124 (273)
.|++++|+..|.++++.. ..++...+.++..+|.++... ++++|+.+|++++.+... -..++..+|.++..
T Consensus 18 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~ 89 (275)
T 1xnf_A 18 TLQQEVILARMEQILASR--ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD------MPEVFNYLGIYLTQ 89 (275)
T ss_dssp CHHHHHHHHHHHHHHTSS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhcc--cccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHH
Confidence 467888888888887652 234567788999999999887 999999999999997543 24589999999999
Q ss_pred cCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHH
Q 024043 125 EHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQL 204 (273)
Q Consensus 125 ~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l 204 (273)
.|++++|+.+|++|+++.+.. ..++..+|.++...|++++|+.+|++++...+.++ ......+ +..
T Consensus 90 ~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~-------~~~~~~~-~~~ 155 (275)
T 1xnf_A 90 AGNFDAAYEAFDSVLELDPTY------NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP-------FRSLWLY-LAE 155 (275)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-------HHHHHHH-HHH
T ss_pred ccCHHHHHHHHHHHHhcCccc------cHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh-------HHHHHHH-HHH
Confidence 999999999999999986432 36789999999999999999999999987555442 1112223 235
Q ss_pred hcCCHHHHHHHHHHHH
Q 024043 205 CKGDVVAITNALERYQ 220 (273)
Q Consensus 205 ~~gd~~~A~~~~~~~~ 220 (273)
..|++..|...+++..
T Consensus 156 ~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 156 QKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHCHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHH
Confidence 6689999999887654
No 91
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.37 E-value=3.2e-11 Score=98.60 Aligned_cols=140 Identities=11% Similarity=0.050 Sum_probs=109.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc------------------c-CHHHHHHHHHHH
Q 024043 38 KAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKK------------------T-SSNEAISCLEQA 98 (273)
Q Consensus 38 ~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~------------------~-~~~eA~~~~~~A 98 (273)
..|.+|...|+|++|+..|.+++..+..... +..++..+|.++.. . ++++|+..|+++
T Consensus 46 ~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~---~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 122 (225)
T 2yhc_A 46 DLIYAYYKNADLPLAQAAIDRFIRLNPTHPN---IDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKL 122 (225)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT---HHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc---HHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHH
Confidence 3477888999999999999999988754433 33455666666542 3 799999999999
Q ss_pred HHHHHhcCChhHH-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcC
Q 024043 99 VNMFCDIGRLSMA-----------ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQ 167 (273)
Q Consensus 99 l~~~~~~g~~~~~-----------a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~ 167 (273)
+..++.......+ +.....+|.+|...|++++|+..|+++++.++... ....++..+|.++.++|+
T Consensus 123 l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~a~~~l~~~~~~~g~ 199 (225)
T 2yhc_A 123 VRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQ---ATRDALPLMENAYRQMQM 199 (225)
T ss_dssp HTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSH---HHHHHHHHHHHHHHHTTC
T ss_pred HHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCC---ccHHHHHHHHHHHHHcCC
Confidence 9988766543321 22335788999999999999999999999987542 345789999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 024043 168 YHKSIEIYEEIARQSL 183 (273)
Q Consensus 168 y~~A~~~~~~~~~~~~ 183 (273)
+++|++.++++....+
T Consensus 200 ~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 200 NAQAEKVAKIIAANSS 215 (225)
T ss_dssp HHHHHHHHHHHHHCCS
T ss_pred cHHHHHHHHHHHhhCC
Confidence 9999999998865433
No 92
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.36 E-value=8.7e-12 Score=92.92 Aligned_cols=104 Identities=15% Similarity=0.111 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCc
Q 024043 70 HEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVT 148 (273)
Q Consensus 70 ~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~ 148 (273)
+..+..+.+.|++|.+. ++++|+++|++|+++.+.. +.++.++|.++..+|++++|+..|++|+++.+.
T Consensus 10 P~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---- 79 (126)
T 4gco_A 10 PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN------AILYSNRAACLTKLMEFQRALDDCDTCIRLDSK---- 79 (126)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh----
Confidence 45677888899998777 9999999999999875433 468999999999999999999999999998432
Q ss_pred ccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043 149 TSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN 185 (273)
Q Consensus 149 ~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~ 185 (273)
...++..+|.++..+|+|++|++.|++++...+++
T Consensus 80 --~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~ 114 (126)
T 4gco_A 80 --FIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSN 114 (126)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred --hhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCC
Confidence 24679999999999999999999999998776665
No 93
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.34 E-value=4.8e-11 Score=96.41 Aligned_cols=167 Identities=12% Similarity=0.195 Sum_probs=117.3
Q ss_pred HHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHH----------------HHHHHHhcCCHHHHHHHHH
Q 024043 74 QAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKE----------------IAELYESEHNIEQTIVFFE 136 (273)
Q Consensus 74 ~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~----------------lg~~~~~~g~~~~A~~~y~ 136 (273)
..+...|..+... ++++|+.+|++++.+.+.. +.++.. +|.++...|++++|+.+|+
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 78 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDR------TEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYK 78 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHH------HHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------hHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3445566666555 9999999999999876543 234445 9999999999999999999
Q ss_pred HHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCH--HHHHH
Q 024043 137 KAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDV--VAITN 214 (273)
Q Consensus 137 ~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~--~~A~~ 214 (273)
+|+++.+.. ..++..+|.++..+|++++|+.+|++++...+++. ..++++|.++...|+. ..+..
T Consensus 79 ~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~-------~a~~~lg~~~~~~~~~~~~~~~~ 145 (208)
T 3urz_A 79 ELLQKAPNN------VDCLEACAEMQVCRGQEKDALRMYEKILQLEADNL-------AANIFLGNYYYLTAEQEKKKLET 145 (208)
T ss_dssp HHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH-------HHHHHHHHHHHHHhHHHHHHHHH
Confidence 999986532 47899999999999999999999999987766553 3667888887666543 23333
Q ss_pred HHHHHH--------HHHHHHhhcCHhHHHHHHHhhhccCCCchhHH--HHHHHHH
Q 024043 215 ALERYQ--------DIAASMDEEDIAKFTDVVKEFDSMTPLDPWKT--TLLLRVK 259 (273)
Q Consensus 215 ~~~~~~--------~ll~a~~~~d~~~~~~~~~~~~~~~~ld~~~~--~~l~~~~ 259 (273)
.+.... .....+..-....+.+++..|++...++|-.. +.|.+|+
T Consensus 146 ~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~i~ 200 (208)
T 3urz_A 146 DYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDKIL 200 (208)
T ss_dssp HHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHHHH
T ss_pred HHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 332211 00111111224567889999999999988543 4455543
No 94
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.34 E-value=1e-10 Score=99.75 Aligned_cols=127 Identities=12% Similarity=0.064 Sum_probs=58.7
Q ss_pred HHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCCh-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHH
Q 024043 75 AYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRL-SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSAN 152 (273)
Q Consensus 75 ~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~-~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~ 152 (273)
++..+|.++... ++++|+.+|++++.+... +. ...+.++. .++...|++++|+.+|+++++.+.. ..
T Consensus 132 ~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~--~~~~~l~~a~~---~l~~~~~~~~eA~~~~~~~l~~~p~------~~ 200 (291)
T 3mkr_A 132 CMAMTVQILLKLDRLDLARKELKKMQDQDED--ATLTQLATAWV---SLAAGGEKLQDAYYIFQEMADKCSP------TL 200 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHH---HHHHCTTHHHHHHHHHHHHHHHSCC------CH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcC--cHHHHHHHHHH---HHHhCchHHHHHHHHHHHHHHhCCC------cH
Confidence 444455555444 555555555555554211 10 00111111 1122235555566555555555321 12
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHH-HHHHHHHH
Q 024043 153 QCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVA-ITNALERY 219 (273)
Q Consensus 153 ~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~-A~~~~~~~ 219 (273)
.++..+|.++..+|++++|.+.|++++...++++ ..+.++|.++...|+... +.+++++.
T Consensus 201 ~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~-------~~l~~l~~~~~~~g~~~eaa~~~~~~~ 261 (291)
T 3mkr_A 201 LLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHP-------ETLINLVVLSQHLGKPPEVTNRYLSQL 261 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-------HHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4455555566666666666666665554433331 234455555555555433 34444443
No 95
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.33 E-value=1.9e-10 Score=93.23 Aligned_cols=156 Identities=15% Similarity=0.034 Sum_probs=125.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc----CHHHHHHHHHHHHHHHHhcCChhHH
Q 024043 36 FDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT----SSNEAISCLEQAVNMFCDIGRLSMA 111 (273)
Q Consensus 36 ~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~----~~~eA~~~~~~Al~~~~~~g~~~~~ 111 (273)
+...|.+|...+++++|+.+|.++++. ++ +.++.++|.+|... ++++|+.+|++|++ .|+
T Consensus 21 ~~~lg~~~~~~~~~~~A~~~~~~a~~~----g~----~~a~~~lg~~y~~~g~~~~~~~A~~~~~~A~~----~g~---- 84 (212)
T 3rjv_A 21 QYYLADTWVSSGDYQKAEYWAQKAAAQ----GD----GDALALLAQLKIRNPQQADYPQARQLAEKAVE----AGS---- 84 (212)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHT----TC----HHHHHHHHHHTTSSTTSCCHHHHHHHHHHHHH----TTC----
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH----CCC----
Confidence 445688888899999999999999763 44 46788999999777 89999999999964 344
Q ss_pred HHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHh
Q 024043 112 ARYYKEIAELYES----EHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAE----LEQYHKSIEIYEEIARQSL 183 (273)
Q Consensus 112 a~~l~~lg~~~~~----~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~----~g~y~~A~~~~~~~~~~~~ 183 (273)
+.++.++|.+|.. .+++++|+.+|++|++.- .......++.++|.+|.. .+++++|+.+|++++.. .
T Consensus 85 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~----~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~ 159 (212)
T 3rjv_A 85 KSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS----ESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-S 159 (212)
T ss_dssp HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST----TSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-S
T ss_pred HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC----CCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-C
Confidence 5688999999987 789999999999998652 211335789999999999 88999999999999753 2
Q ss_pred ccchhhhchhhHHHHHHHHHHhc-C-----CHHHHHHHHHHH
Q 024043 184 NNNLLKYGVKGHLLNAGICQLCK-G-----DVVAITNALERY 219 (273)
Q Consensus 184 ~~~~~~~~~~~~~~~~gl~~l~~-g-----d~~~A~~~~~~~ 219 (273)
++ ...++++|.+|..- | |+..|...+++.
T Consensus 160 ~~-------~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A 194 (212)
T 3rjv_A 160 RT-------GYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVS 194 (212)
T ss_dssp CT-------THHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHH
T ss_pred CC-------HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Confidence 22 23567888887643 3 899999988875
No 96
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.31 E-value=2.1e-10 Score=88.52 Aligned_cols=113 Identities=17% Similarity=0.157 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCC
Q 024043 35 LFDKAANSFKLAKSWDKAGATYVKLANCHLKL------ESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGR 107 (273)
Q Consensus 35 ~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~ 107 (273)
.+...|+.+...|+|++|+.+|.+|+++.... .....-+.+|.+.|.++..+ ++++|+.+|++|+++|-+.+.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 34455888888999999999999999997652 11223455999999999888 999999999999999655443
Q ss_pred h-hHHHHHH----HHHHHHHHhcCCHHHHHHHHHHHHHHHhccCC
Q 024043 108 L-SMAARYY----KEIAELYESEHNIEQTIVFFEKAADMFQNEEV 147 (273)
Q Consensus 108 ~-~~~a~~l----~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~ 147 (273)
. ..-+.+| .+.|.++..+|++++|+.+|++|+++..+...
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~ 137 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG 137 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence 2 2345677 99999999999999999999999999887654
No 97
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.31 E-value=3.1e-10 Score=112.60 Aligned_cols=221 Identities=12% Similarity=0.139 Sum_probs=150.9
Q ss_pred hHhhHHHHHHHHHHhhcccc-CC-C-CCHHHHHHHHHH---------HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHH
Q 024043 4 QIARAEEFEKKAEKKLNGWG-LF-G-SKYEDAADLFDK---------AANSFKLAKSWDKAGATYVKLANCHLKLESKHE 71 (273)
Q Consensus 4 ~~~~a~~l~~~Aek~~k~~~-~~-~-~~~~~A~~~~~~---------a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 71 (273)
+.+||-.++++++...+... +. . ++|++|.+++.+ .|..+...|++++|+++|.+| ++
T Consensus 1064 lyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA-------dD--- 1133 (1630)
T 1xi4_A 1064 LFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DD--- 1133 (1630)
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-------CC---
Confidence 36777777777765444211 11 2 678888877754 477788888888888888775 33
Q ss_pred HHHHHHHHHHHHhcc-CHHHHHHHHHHHHHH-------------HHhcCChhHHHH--------HHHHHHHHHHhcCCHH
Q 024043 72 AAQAYVDAAHCYKKT-SSNEAISCLEQAVNM-------------FCDIGRLSMAAR--------YYKEIAELYESEHNIE 129 (273)
Q Consensus 72 aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~-------------~~~~g~~~~~a~--------~l~~lg~~~~~~g~~~ 129 (273)
...|.+.+.++.+. ++++|+++|..|... |.+.++...... .+.++|..+...|+|+
T Consensus 1134 -~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~Ye 1212 (1630)
T 1xi4_A 1134 -PSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYD 1212 (1630)
T ss_pred -hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHH
Confidence 24667788888777 899999999877632 222333332221 3567999999999999
Q ss_pred HHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh---------ccchh----hhc-----
Q 024043 130 QTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSL---------NNNLL----KYG----- 191 (273)
Q Consensus 130 ~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~---------~~~~~----~~~----- 191 (273)
+|..+|.+| ..|.++|.++.++|+|++|++.++++..... +.... ..+
T Consensus 1213 eA~~~Y~kA--------------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv 1278 (1630)
T 1xi4_A 1213 AAKLLYNNV--------------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV 1278 (1630)
T ss_pred HHHHHHHhh--------------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhc
Confidence 999999885 3688999999999999999999999842211 00000 000
Q ss_pred hhhHHHHHHHHHHhcCCHHHHHHHHHHHH-----------HHHHHHhhcCHhHHHHHHHhhhccCCCch
Q 024043 192 VKGHLLNAGICQLCKGDVVAITNALERYQ-----------DIAASMDEEDIAKFTDVVKEFDSMTPLDP 249 (273)
Q Consensus 192 ~~~~~~~~gl~~l~~gd~~~A~~~~~~~~-----------~ll~a~~~~d~~~~~~~~~~~~~~~~ld~ 249 (273)
..+.+..++..|...|.+++|.+.++... .+-..+..-.++++.+.++-|-+-..+.|
T Consensus 1279 ~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k 1347 (1630)
T 1xi4_A 1279 HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPK 1347 (1630)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccch
Confidence 12233455666777888888888887653 33344566678888888888887777777
No 98
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.30 E-value=1e-11 Score=95.33 Aligned_cols=123 Identities=10% Similarity=0.031 Sum_probs=97.3
Q ss_pred HHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHH
Q 024043 78 DAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQ 156 (273)
Q Consensus 78 ~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~ 156 (273)
.+|.+++.. ++++|+..+++++...+ .....+..+|.+|...|++++|+++|++|+++.+.. ..++.
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p------~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~------~~a~~ 69 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPR------QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD------PKAHR 69 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHH------HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCc------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHH
Confidence 467888777 99999999999876544 345578899999999999999999999999985432 47899
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHH-HHHH
Q 024043 157 KVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNA-LERY 219 (273)
Q Consensus 157 ~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~-~~~~ 219 (273)
.+|.++..+|++++|+..|++++...+++ ...++++|.++...|++.+|.+. +++.
T Consensus 70 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~~~~~~aa~~~~~~a 126 (150)
T 4ga2_A 70 FLGLLYELEENTDKAVECYRRSVELNPTQ-------KDLVLKIAELLCKNDVTDGRAKYWVERA 126 (150)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHCSSSSHHHHHHHHH
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 99999999999999999999998766554 24678899999999988665554 4554
No 99
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.30 E-value=1.1e-10 Score=93.58 Aligned_cols=153 Identities=14% Similarity=0.065 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCccc
Q 024043 72 AAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTS 150 (273)
Q Consensus 72 aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~ 150 (273)
.+..+.+.|.++... ++++|+.+|++++. + .+.++.++|.++...|++++|+.+|++|+.+...
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~-------~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~------ 69 (213)
T 1hh8_A 5 EAISLWNEGVLAADKKDWKGALDAFSAVQD-------P--HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH------ 69 (213)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSSS-------C--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHcC-------C--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc------
Confidence 344566788888766 99999999999851 1 2569999999999999999999999999998532
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccch---------hhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 024043 151 ANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNL---------LKYGVKGHLLNAGICQLCKGDVVAITNALERYQD 221 (273)
Q Consensus 151 ~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~ 221 (273)
...++..+|.++..+|+|++|++.|++++...++++. ........++++|.++...|++..|...+++...
T Consensus 70 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 70 LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 2467999999999999999999999999865544320 0112346778999999999999999999998743
Q ss_pred HHHHHhhcCHhHHHHHHHhhh
Q 024043 222 IAASMDEEDIAKFTDVVKEFD 242 (273)
Q Consensus 222 ll~a~~~~d~~~~~~~~~~~~ 242 (273)
+ ........+..++..+.
T Consensus 150 ~---~p~~~~~~~~~a~~~~~ 167 (213)
T 1hh8_A 150 M---KSEPRHSKIDKAMECVW 167 (213)
T ss_dssp T---CCSGGGGHHHHHHHHHH
T ss_pred c---CcccccchHHHHHHHHH
Confidence 2 11222345666666554
No 100
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.30 E-value=2.3e-11 Score=115.66 Aligned_cols=189 Identities=11% Similarity=0.033 Sum_probs=144.7
Q ss_pred HHcCCHHHHHHHHHHHHHHH-H-HcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 024043 44 KLAKSWDKAGATYVKLANCH-L-KLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAE 120 (273)
Q Consensus 44 ~~~~~~~~A~~~~~~a~~~~-~-~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~ 120 (273)
...|++++|+++|.++++.. . ........+.++..+|.++... ++++|+..|++++.+.... +.++.++|.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~lg~ 475 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWR------WRLVWYRAV 475 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC------HHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcch------HHHHHHHHH
Confidence 56789999999999998211 1 0011122346788889998777 9999999999999886543 468999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHH
Q 024043 121 LYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAG 200 (273)
Q Consensus 121 ~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 200 (273)
++...|++++|+..|++|+++.... ..++.++|.++..+|+|++ ++.|++++...+++ ...++++|
T Consensus 476 ~~~~~g~~~~A~~~~~~al~l~P~~------~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~-------~~a~~~lg 541 (681)
T 2pzi_A 476 AELLTGDYDSATKHFTEVLDTFPGE------LAPKLALAATAELAGNTDE-HKFYQTVWSTNDGV-------ISAAFGLA 541 (681)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTC------SHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTC-------HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCch-------HHHHHHHH
Confidence 9999999999999999999987543 3678899999999999999 99999998765554 23678899
Q ss_pred HHHHhcCCHHHHHHHHHHHH-----------HHHHHHhh-c-----CHhHHHHHHHhhhccCCCchhHH
Q 024043 201 ICQLCKGDVVAITNALERYQ-----------DIAASMDE-E-----DIAKFTDVVKEFDSMTPLDPWKT 252 (273)
Q Consensus 201 l~~l~~gd~~~A~~~~~~~~-----------~ll~a~~~-~-----d~~~~~~~~~~~~~~~~ld~~~~ 252 (273)
.++...|++++|...+++.. .+-.++-. + +.+.+.+++..+..+...++-..
T Consensus 542 ~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~ 610 (681)
T 2pzi_A 542 RARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVL 610 (681)
T ss_dssp HHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTHH
T ss_pred HHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHH
Confidence 99999999999999988643 22222222 2 25889999999988876555433
No 101
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.28 E-value=1.1e-11 Score=117.88 Aligned_cols=146 Identities=12% Similarity=-0.014 Sum_probs=117.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHH
Q 024043 37 DKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYY 115 (273)
Q Consensus 37 ~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l 115 (273)
...|.++...|++++|+..|.++++.... + +.++..+|.++... ++++|+.+|++|+.+.... +.++
T Consensus 437 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~--~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~------~~~~ 504 (681)
T 2pzi_A 437 LMEVRALLDLGDVAKATRKLDDLAERVGW--R----WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGE------LAPK 504 (681)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCC--C----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC------SHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccCcc--h----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------hHHH
Confidence 34467888999999999999999987532 2 46888999999877 9999999999999987655 3588
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhH
Q 024043 116 KEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGH 195 (273)
Q Consensus 116 ~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~ 195 (273)
.++|.++..+|++++ +.+|++|+++.... ..++.++|.++..+|++++|++.|++++...+. ....
T Consensus 505 ~~lg~~~~~~g~~~~-~~~~~~al~~~P~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-------~~~a 570 (681)
T 2pzi_A 505 LALAATAELAGNTDE-HKFYQTVWSTNDGV------ISAAFGLARARSAEGDRVGAVRTLDEVPPTSRH-------FTTA 570 (681)
T ss_dssp HHHHHHHHHHTCCCT-TCHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTT-------HHHH
T ss_pred HHHHHHHHHcCChHH-HHHHHHHHHhCCch------HHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcc-------cHHH
Confidence 999999999999999 99999999985432 357999999999999999999999998643332 2345
Q ss_pred HHHHHHHHHhcCC
Q 024043 196 LLNAGICQLCKGD 208 (273)
Q Consensus 196 ~~~~gl~~l~~gd 208 (273)
+++++.+++..++
T Consensus 571 ~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 571 RLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHTC----
T ss_pred HHHHHHHHHccCC
Confidence 6778888776555
No 102
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.28 E-value=2.8e-10 Score=87.12 Aligned_cols=138 Identities=14% Similarity=0.083 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcc
Q 024043 71 EAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTT 149 (273)
Q Consensus 71 ~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~ 149 (273)
..+..+..+|.++... ++++|+.+|++++.+.... ..++.++|.++...|++++|+.+|++++.+....
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~---- 80 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN------AIYYGNRSLAYLRTECYGYALGDATRAIELDKKY---- 80 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc----
Confidence 4556677777777665 7888888888877764432 4577788888888888888888888888775321
Q ss_pred cHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 024043 150 SANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDIAAS 225 (273)
Q Consensus 150 ~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~ll~a 225 (273)
..++..+|.++..+|++++|+.+|++++...+.+.. ....+..+..++..|++.+|...+.....+++.
T Consensus 81 --~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~-----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 149 (166)
T 1a17_A 81 --IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKD-----AKMKYQECNKIVKQKAFERAIAGDEHKRSVVDS 149 (166)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHHHHHHHHHHHHcccchHHHhcc
Confidence 356778888888888888888888887755444321 111233344466677777777777766555443
No 103
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.28 E-value=6.7e-10 Score=101.08 Aligned_cols=160 Identities=15% Similarity=0.125 Sum_probs=101.9
Q ss_pred CCHHHHHHHHHHH------------HHHHHH----cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc----c
Q 024043 27 SKYEDAADLFDKA------------ANSFKL----AKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKK----T 86 (273)
Q Consensus 27 ~~~~~A~~~~~~a------------~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~----~ 86 (273)
+++++|..+|.++ |.+|.. .+++++|+.+|.++++. ++ ..++..+|.+|.. .
T Consensus 57 ~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~g~~ 128 (490)
T 2xm6_A 57 KDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK----GL----PQAQQNLGVMYHEGNGVK 128 (490)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHTSSSC
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHHcCCCCC
Confidence 6777887777765 456666 77788888888887653 33 3456667777765 3
Q ss_pred -CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHH
Q 024043 87 -SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYES----EHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQY 161 (273)
Q Consensus 87 -~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~----~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~ 161 (273)
++++|+.+|++|++. |+ +.++.++|.+|.. .+++++|+++|++|++. ++ ..++..+|.+
T Consensus 129 ~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~----~~----~~a~~~Lg~~ 192 (490)
T 2xm6_A 129 VDKAESVKWFRLAAEQ----GR----DSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ----GN----VWSCNQLGYM 192 (490)
T ss_dssp CCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TC----HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CC----HHHHHHHHHH
Confidence 777777777777653 33 4567777777776 56777777777777654 21 3556677777
Q ss_pred HHH----hcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHh----cCCHHHHHHHHHHH
Q 024043 162 AAE----LEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLC----KGDVVAITNALERY 219 (273)
Q Consensus 162 ~~~----~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~----~gd~~~A~~~~~~~ 219 (273)
|.. .+++++|+++|++++.. ++ ...++.+|.++.. .+|+.+|...+++.
T Consensus 193 y~~g~g~~~~~~~A~~~~~~a~~~--~~-------~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a 249 (490)
T 2xm6_A 193 YSRGLGVERNDAISAQWYRKSATS--GD-------ELGQLHLADMYYFGIGVTQDYTQSRVLFSQS 249 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHT--TC-------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HhcCCCCCcCHHHHHHHHHHHHHC--CC-------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 776 66777777777776531 11 1234455555553 55666665555543
No 104
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.26 E-value=5.8e-11 Score=88.38 Aligned_cols=111 Identities=14% Similarity=0.151 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHH
Q 024043 33 ADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMA 111 (273)
Q Consensus 33 ~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~ 111 (273)
++.+...|+.|...|+|++|+.+|.+++++... -+.++.++|.+|... ++++|+.+|++|+++....
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------ 80 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE------NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF------ 80 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh------
Confidence 345556799999999999999999999987432 256889999999888 9999999999999885433
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHH
Q 024043 112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQY 161 (273)
Q Consensus 112 a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~ 161 (273)
..++.++|.++..+|++++|+++|++|+++.+.. ..++..++.+
T Consensus 81 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~------~~a~~~l~~~ 124 (126)
T 4gco_A 81 IKGYIRKAACLVAMREWSKAQRAYEDALQVDPSN------EEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCC------HHHHHHHHHh
Confidence 4589999999999999999999999999986533 2445555554
No 105
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.25 E-value=3.9e-11 Score=111.35 Aligned_cols=123 Identities=11% Similarity=0.011 Sum_probs=54.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 024043 40 ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEI 118 (273)
Q Consensus 40 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~l 118 (273)
|.++...|++++|..+|.+++++... ...++.++|.+|... ++++|+.+|++++.+.... +.++.++
T Consensus 30 g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l 97 (568)
T 2vsy_A 30 ADAELGMGDTTAGEMAVQRGLALHPG------HPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEH------PGIALWL 97 (568)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHTTSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC------HHHHHHH
Confidence 44444444444444444444443211 123444444444443 4444555554444442211 2344444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHH
Q 024043 119 AELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAEL---EQYHKSIEIYEEIAR 180 (273)
Q Consensus 119 g~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~---g~y~~A~~~~~~~~~ 180 (273)
|.++...|++++|+++|++|+++.... ..++..+|.++..+ |++++|++.|++++.
T Consensus 98 a~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 98 GHALEDAGQAEAAAAAYTRAHQLLPEE------PYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 444444445555555554444442211 23344444444444 444445544444443
No 106
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.25 E-value=5.6e-11 Score=91.55 Aligned_cols=103 Identities=15% Similarity=0.103 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCc
Q 024043 70 HEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVT 148 (273)
Q Consensus 70 ~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~ 148 (273)
+....++..+|.++... ++++|+.+|++++.+.+.. +.++.++|.++...|++++|+.+|++|+.+.+..
T Consensus 33 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~------~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~--- 103 (151)
T 3gyz_A 33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN------VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND--- 103 (151)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC---
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC---
Confidence 45566788888888777 9999999999999886543 4589999999999999999999999999997543
Q ss_pred ccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhc
Q 024043 149 TSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLN 184 (273)
Q Consensus 149 ~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~ 184 (273)
..++.++|.++..+|++++|+..|++++...++
T Consensus 104 ---~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 104 ---YTPVFHTGQCQLRLKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp ---CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred ---cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 257899999999999999999999999865544
No 107
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.24 E-value=2.8e-10 Score=83.33 Aligned_cols=129 Identities=18% Similarity=0.294 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHH
Q 024043 35 LFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAAR 113 (273)
Q Consensus 35 ~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~ 113 (273)
.+...|.++...|++++|...|.++...... + ...+..+|.++... ++++|+.++++++..... ...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~ 70 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR--S----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR------SAE 70 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc--c----hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC------chH
Confidence 4556788999999999999999999876321 2 45677888888766 999999999999887432 245
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 024043 114 YYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQ 181 (273)
Q Consensus 114 ~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~ 181 (273)
++..+|.++...|++++|+.++++++...... ..++..+|.++...|++++|+.+|++++..
T Consensus 71 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 71 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRS------AEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 78899999999999999999999999875422 467889999999999999999999998753
No 108
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.24 E-value=2.7e-10 Score=87.24 Aligned_cols=134 Identities=14% Similarity=0.123 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCCh
Q 024043 30 EDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRL 108 (273)
Q Consensus 30 ~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~ 108 (273)
.+.+..+...|.++...|++++|+..|.+++...... ..++..+|.++... ++++|+.++++++.+....
T Consensus 10 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~--- 80 (166)
T 1a17_A 10 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN------AIYYGNRSLAYLRTECYGYALGDATRAIELDKKY--- 80 (166)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---
Confidence 3445666777999999999999999999999874322 56788999999877 9999999999999985432
Q ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 024043 109 SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIA 179 (273)
Q Consensus 109 ~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~ 179 (273)
..++..+|.++...|++++|+.+|++++++..... ........+..+...|++++|++.+.+..
T Consensus 81 ---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~----~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 81 ---IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK----DAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 46899999999999999999999999999865332 12334556666888999999999999875
No 109
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.23 E-value=1.7e-09 Score=98.42 Aligned_cols=151 Identities=15% Similarity=0.155 Sum_probs=99.0
Q ss_pred HhhHHHHHHHHHHhhc-------ccc-CC----CCCHHHHHHHHHHH------------HHHHHH----cCCHHHHHHHH
Q 024043 5 IARAEEFEKKAEKKLN-------GWG-LF----GSKYEDAADLFDKA------------ANSFKL----AKSWDKAGATY 56 (273)
Q Consensus 5 ~~~a~~l~~~Aek~~k-------~~~-~~----~~~~~~A~~~~~~a------------~~~~~~----~~~~~~A~~~~ 56 (273)
.++|.+++++|-+.-. |.. .. .+|+++|..+|.++ |.+|.. .+++++|+..|
T Consensus 59 ~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 138 (490)
T 2xm6_A 59 LTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWF 138 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 5667777777765421 100 11 36888888888876 456666 67888888888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhc----c-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHh----cCC
Q 024043 57 VKLANCHLKLESKHEAAQAYVDAAHCYKK----T-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYES----EHN 127 (273)
Q Consensus 57 ~~a~~~~~~~~~~~~aa~~~~~~~~~~~~----~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~----~g~ 127 (273)
+++++. ++ ..++..+|.+|.. . ++++|+.+|+++++. |+ +.++..+|.+|.. .++
T Consensus 139 ~~a~~~----~~----~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~g~~~~ 202 (490)
T 2xm6_A 139 RLAAEQ----GR----DSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ----GN----VWSCNQLGYMYSRGLGVERN 202 (490)
T ss_dssp HHHHHT----TC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHTSSSCCC
T ss_pred HHHHHC----CC----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHhcCCCCCcC
Confidence 888653 33 3567778888865 2 788888888888753 33 4567777777776 577
Q ss_pred HHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHH----hcCHHHHHHHHHHHH
Q 024043 128 IEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAE----LEQYHKSIEIYEEIA 179 (273)
Q Consensus 128 ~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~----~g~y~~A~~~~~~~~ 179 (273)
+++|+.+|++|++. ++ ..++..+|.++.. .+++++|+.+|++++
T Consensus 203 ~~~A~~~~~~a~~~----~~----~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~ 250 (490)
T 2xm6_A 203 DAISAQWYRKSATS----GD----ELGQLHLADMYYFGIGVTQDYTQSRVLFSQSA 250 (490)
T ss_dssp HHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC----CC----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 77777777777653 11 2345556666654 556666666666554
No 110
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.23 E-value=1.6e-10 Score=100.45 Aligned_cols=136 Identities=13% Similarity=0.165 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHH
Q 024043 32 AADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLES---------KHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNM 101 (273)
Q Consensus 32 A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~ 101 (273)
-+..+...|.++...|+|++|+.+|.+++.+...... ....+.++.++|.||... ++++|+.+|++|+.+
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3445667799999999999999999999998765431 223368899999999888 999999999999998
Q ss_pred HHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHH-HHHHHHHH
Q 024043 102 FCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKS-IEIYEEIA 179 (273)
Q Consensus 102 ~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A-~~~~~~~~ 179 (273)
.... +.++.++|.+|..+|++++|+.+|++|+++.... ..++..++.++..+|++++| ...|++..
T Consensus 226 ~p~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~------~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 226 DSNN------EKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN------KAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp CTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCc------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6432 5689999999999999999999999999985432 36789999999999999999 45777765
No 111
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.23 E-value=2.8e-10 Score=98.94 Aligned_cols=155 Identities=12% Similarity=0.093 Sum_probs=122.7
Q ss_pred cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCC---------hhHHHHHH
Q 024043 46 AKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGR---------LSMAARYY 115 (273)
Q Consensus 46 ~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~---------~~~~a~~l 115 (273)
.+++++|++.|.++.... ...+..+.++|.++... ++++|+.+|++|+.+.....+ ....+.++
T Consensus 126 L~~~~~A~~~~~~a~~~~------p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~ 199 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEK------LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASH 199 (336)
T ss_dssp EEEEECCCCGGGCCHHHH------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHH------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHH
Confidence 455666666666665542 44577889999999777 999999999999999876542 12236899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhH
Q 024043 116 KEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGH 195 (273)
Q Consensus 116 ~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~ 195 (273)
.++|.++..+|++++|+.+|++|+++... ...++.++|.++..+|+|++|+..|++++...+++. ..
T Consensus 200 ~nla~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~-------~a 266 (336)
T 1p5q_A 200 LNLAMCHLKLQAFSAAIESCNKALELDSN------NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNK-------AA 266 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCH-------HH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH-------HH
Confidence 99999999999999999999999998543 246899999999999999999999999987655542 35
Q ss_pred HHHHHHHHHhcCCHHHHH-HHHHHH
Q 024043 196 LLNAGICQLCKGDVVAIT-NALERY 219 (273)
Q Consensus 196 ~~~~gl~~l~~gd~~~A~-~~~~~~ 219 (273)
+..++.++...|++.+|. ..+...
T Consensus 267 ~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 267 KTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888899888774 344443
No 112
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.21 E-value=2.8e-09 Score=90.77 Aligned_cols=161 Identities=14% Similarity=0.093 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHH
Q 024043 34 DLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAA 112 (273)
Q Consensus 34 ~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a 112 (273)
..+...+..+...+++++|+..+++.+... . + +.....+..+|.++... ++++|++++++ .+ -.
T Consensus 66 ~a~~~la~~~~~~~~~~~A~~~l~~ll~~~--~-~-P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~----~~ 130 (291)
T 3mkr_A 66 QAVRMFAEYLASHSRRDAIVAELDREMSRS--V-D-VTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GD----SL 130 (291)
T ss_dssp HHHHHHHHHHHCSTTHHHHHHHHHHHHHSC--C-C-CSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CC----SH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHhcc--c-C-CCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CC----CH
Confidence 344455677777788888888877765421 0 1 11234577788888766 99999998887 12 23
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhch
Q 024043 113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGV 192 (273)
Q Consensus 113 ~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~ 192 (273)
.++..+|.++..+|++++|+..|++++++.+.. ...........++...|++++|+.+|++++...+.+
T Consensus 131 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~----~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~------- 199 (291)
T 3mkr_A 131 ECMAMTVQILLKLDRLDLARKELKKMQDQDEDA----TLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPT------- 199 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCC-------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCc----HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCc-------
Confidence 578889999999999999999999999885321 111111112233345589999999999998765543
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043 193 KGHLLNAGICQLCKGDVVAITNALERYQ 220 (273)
Q Consensus 193 ~~~~~~~gl~~l~~gd~~~A~~~~~~~~ 220 (273)
...+.++|.++...|++++|...+++..
T Consensus 200 ~~~~~~la~~~~~~g~~~eA~~~l~~al 227 (291)
T 3mkr_A 200 LLLLNGQAACHMAQGRWEAAEGVLQEAL 227 (291)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2467788999999999999999999865
No 113
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.19 E-value=9.5e-10 Score=100.37 Aligned_cols=133 Identities=5% Similarity=-0.097 Sum_probs=108.6
Q ss_pred ccCHHHHHHHHHHHHHHHHh-cC-ChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc-C-CcccHHHHHHHHHH
Q 024043 85 KTSSNEAISCLEQAVNMFCD-IG-RLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE-E-VTTSANQCKQKVAQ 160 (273)
Q Consensus 85 ~~~~~eA~~~~~~Al~~~~~-~g-~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~-~-~~~~~~~~~~~~a~ 160 (273)
..++++|+.+|++++++..+ .| +....+.++.++|.+|..+|+|++|..+|++|+++++.. | ++...+.++.++|.
T Consensus 322 qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 401 (490)
T 3n71_A 322 EGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGL 401 (490)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 34999999999999999976 34 456789999999999999999999999999999999875 3 35677899999999
Q ss_pred HHHHhcCHHHHHHHHHHHHHH---HhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 024043 161 YAAELEQYHKSIEIYEEIARQ---SLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERY 219 (273)
Q Consensus 161 ~~~~~g~y~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~ 219 (273)
+|..+|+|++|..+|++++.. .+|.. -..+......++.++..++.+.+|...+.+.
T Consensus 402 ~~~~~G~~~eA~~~~~~Al~i~~~~lG~~--Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~ 461 (490)
T 3n71_A 402 TNWHAGHIEVGHGMICKAYAILLVTHGPS--HPITKDLEAMRMQTEMELRMFRQNEFMYHKM 461 (490)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999633 33432 1234555566677888888888887777664
No 114
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.18 E-value=3.8e-10 Score=83.11 Aligned_cols=97 Identities=13% Similarity=0.089 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHH
Q 024043 74 QAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSAN 152 (273)
Q Consensus 74 ~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~ 152 (273)
..+.+.|.++... ++++|+.+|++++.+.... +.++.++|.++...|++++|+.+|++|+++.... .
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~ 72 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED------ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF------V 72 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------H
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc------H
Confidence 3444444444333 5555555555555443221 2345555555555555555555555555543211 2
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 024043 153 QCKQKVAQYAAELEQYHKSIEIYEEIARQS 182 (273)
Q Consensus 153 ~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~ 182 (273)
.++..+|.++..+|++++|+..|++++...
T Consensus 73 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 73 RAYIRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 345555555555555555555555554443
No 115
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.18 E-value=3.4e-10 Score=87.31 Aligned_cols=104 Identities=11% Similarity=0.083 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHHHhcc-CHHHHHHHHHHH
Q 024043 32 AADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLES------------KHEAAQAYVDAAHCYKKT-SSNEAISCLEQA 98 (273)
Q Consensus 32 A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~------------~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~A 98 (273)
.+..+...|+.+...|+|++|+.+|.+++.+...... ....+.++.++|.||... ++++|+.+++++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3455566677777788888888888888877543210 122233444444444443 444444444444
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 024043 99 VNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADM 141 (273)
Q Consensus 99 l~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~ 141 (273)
+.+.+.. +.++..+|.++..+|++++|+.+|++|+++
T Consensus 90 l~~~p~~------~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 90 LKREETN------EKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhcCCcc------hHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 4442111 234444444444444444444444444444
No 116
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.18 E-value=6.8e-10 Score=85.44 Aligned_cols=100 Identities=16% Similarity=0.115 Sum_probs=86.7
Q ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchh
Q 024043 109 SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLL 188 (273)
Q Consensus 109 ~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~ 188 (273)
..-+.++.++|.++...|++++|+.+|++++.+.+.. ..++..+|.++..+|+|++|+..|++++...++++
T Consensus 33 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~------~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~-- 104 (151)
T 3gyz_A 33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN------VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDY-- 104 (151)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCC--
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCc--
Confidence 3346688999999999999999999999999985432 46799999999999999999999999988776653
Q ss_pred hhchhhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 024043 189 KYGVKGHLLNAGICQLCKGDVVAITNALERYQD 221 (273)
Q Consensus 189 ~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~ 221 (273)
..++++|.|+...|+++.|..+|++...
T Consensus 105 -----~~~~~lg~~~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 105 -----TPVFHTGQCQLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp -----HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3678999999999999999999998743
No 117
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.18 E-value=2.4e-10 Score=106.00 Aligned_cols=133 Identities=8% Similarity=0.024 Sum_probs=84.3
Q ss_pred CCchHhhHHHHHHHHHHhhcc----c-----cCCC-CCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHH
Q 024043 1 MGDQIARAEEFEKKAEKKLNG----W-----GLFG-SKYEDAADLFDKA--------------ANSFKLAKSWDKAGATY 56 (273)
Q Consensus 1 ~~~~~~~a~~l~~~Aek~~k~----~-----~~~~-~~~~~A~~~~~~a--------------~~~~~~~~~~~~A~~~~ 56 (273)
|+...++|.+++++|-+.-.. + .++. +++++|...|.++ |.+|...|++++|..+|
T Consensus 1 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 1 MTADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 344556777777776553321 0 1222 7888888888875 66788888888888888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhc---CCHHHHH
Q 024043 57 VKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE---HNIEQTI 132 (273)
Q Consensus 57 ~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~---g~~~~A~ 132 (273)
.+++++... ...++.++|.+|... ++++|+++|++++++.... ..++.++|.++... |++++|+
T Consensus 81 ~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~g~~~~A~ 148 (568)
T 2vsy_A 81 QQASDAAPE------HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE------PYITAQLLNWRRRLCDWRALDVLS 148 (568)
T ss_dssp HHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCCTTHHHHH
T ss_pred HHHHhcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhccccHHHHH
Confidence 888877422 145778888888777 8888888888888775432 35788888888888 8888888
Q ss_pred HHHHHHHHHHhcc
Q 024043 133 VFFEKAADMFQNE 145 (273)
Q Consensus 133 ~~y~~Al~~~~~~ 145 (273)
++|+++++.....
T Consensus 149 ~~~~~al~~~p~~ 161 (568)
T 2vsy_A 149 AQVRAAVAQGVGA 161 (568)
T ss_dssp HHHHHHHHHTCCC
T ss_pred HHHHHHHhcCCcc
Confidence 8888888876543
No 118
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.17 E-value=3.8e-10 Score=87.07 Aligned_cols=111 Identities=10% Similarity=0.028 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCC------------hhHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 024043 69 KHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGR------------LSMAARYYKEIAELYESEHNIEQTIVFF 135 (273)
Q Consensus 69 ~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~------------~~~~a~~l~~lg~~~~~~g~~~~A~~~y 135 (273)
....+..+.+.|..+... ++++|+.+|.+|+.+...... ....+.++.++|.+|..+|++++|+.++
T Consensus 7 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~ 86 (162)
T 3rkv_A 7 KLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETS 86 (162)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 345678888999999777 999999999999999754321 3345679999999999999999999999
Q ss_pred HHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043 136 EKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN 185 (273)
Q Consensus 136 ~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~ 185 (273)
.+|+++.+. ...++..+|.++..+|+|++|+..|++++...+++
T Consensus 87 ~~al~~~p~------~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~ 130 (162)
T 3rkv_A 87 SEVLKREET------NEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAA 130 (162)
T ss_dssp HHHHHHSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHHhcCCc------chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCC
Confidence 999998432 24689999999999999999999999998766654
No 119
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.17 E-value=3.3e-10 Score=87.63 Aligned_cols=104 Identities=14% Similarity=0.101 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCc
Q 024043 70 HEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVT 148 (273)
Q Consensus 70 ~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~ 148 (273)
...+..+..+|.++... ++++|+.+|++++.+.... +.++.++|.+|...|++++|+.+|++|+++....
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--- 78 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPAN------PIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY--- 78 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---
Confidence 44567778888888766 8889999999888876443 4688899999999999999999999999885432
Q ss_pred ccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043 149 TSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN 185 (273)
Q Consensus 149 ~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~ 185 (273)
..++..+|.++..+|+|++|+.+|++++...+++
T Consensus 79 ---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 112 (164)
T 3sz7_A 79 ---SKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNG 112 (164)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSS
T ss_pred ---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Confidence 4678889999999999999999999988766655
No 120
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.17 E-value=1.4e-09 Score=79.46 Aligned_cols=127 Identities=16% Similarity=0.261 Sum_probs=103.6
Q ss_pred HHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHH
Q 024043 74 QAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSAN 152 (273)
Q Consensus 74 ~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~ 152 (273)
.++..+|.++... ++++|+.++++++..... ...++..+|.++...|++++|+.++++++.+... ..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~ 69 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPR------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR------SA 69 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc------chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC------ch
Confidence 3567788888666 999999999999876432 2457889999999999999999999999987532 13
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 024043 153 QCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERY 219 (273)
Q Consensus 153 ~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~ 219 (273)
.++..+|.++...|++++|+.++++++...+.+ ...+..++.++...|++.+|...+++.
T Consensus 70 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~ 129 (136)
T 2fo7_A 70 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS-------AEAWYNLGNAYYKQGDYDEAIEYYQKA 129 (136)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 578899999999999999999999997654332 235667888999999999999988875
No 121
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.16 E-value=1.2e-09 Score=88.51 Aligned_cols=155 Identities=12% Similarity=0.065 Sum_probs=120.9
Q ss_pred hhHHHHHHHHHHhhc--cc---c--CC-CCCHHHHHHHHHHH------------HHHHHHcC----CHHHHHHHHHHHHH
Q 024043 6 ARAEEFEKKAEKKLN--GW---G--LF-GSKYEDAADLFDKA------------ANSFKLAK----SWDKAGATYVKLAN 61 (273)
Q Consensus 6 ~~a~~l~~~Aek~~k--~~---~--~~-~~~~~~A~~~~~~a------------~~~~~~~~----~~~~A~~~~~~a~~ 61 (273)
++|.+++++|-+.-. .+ + ++ .+++++|..+|.++ |.+|.. + ++++|+.+|+++++
T Consensus 3 ~eA~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~ 81 (212)
T 3rjv_A 3 TEPGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE 81 (212)
T ss_dssp -CTTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH
Confidence 467777877776533 11 1 22 38999999999987 345555 6 89999999999964
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHhc----c-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHh----cCCHHHHH
Q 024043 62 CHLKLESKHEAAQAYVDAAHCYKK----T-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYES----EHNIEQTI 132 (273)
Q Consensus 62 ~~~~~~~~~~aa~~~~~~~~~~~~----~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~----~g~~~~A~ 132 (273)
.++ ..++.++|.+|.. . ++++|+.+|++|++ .|+....+.++.++|.+|.. .+++++|+
T Consensus 82 ----~g~----~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~----~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~ 149 (212)
T 3rjv_A 82 ----AGS----KSGEIVLARVLVNRQAGATDVAHAITLLQDAAR----DSESDAAVDAQMLLGLIYASGVHGPEDDVKAS 149 (212)
T ss_dssp ----TTC----HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS----STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHH
T ss_pred ----CCC----HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH----cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 344 4678899999986 3 99999999999985 35444567899999999999 78999999
Q ss_pred HHHHHHHHHHhccCCcccHHHHHHHHHHHHHHh-c-----CHHHHHHHHHHHHH
Q 024043 133 VFFEKAADMFQNEEVTTSANQCKQKVAQYAAEL-E-----QYHKSIEIYEEIAR 180 (273)
Q Consensus 133 ~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~-g-----~y~~A~~~~~~~~~ 180 (273)
.+|++|++. .++ ..++.++|.+|... | ++++|+.+|++++.
T Consensus 150 ~~~~~A~~~---~~~----~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~ 196 (212)
T 3rjv_A 150 EYFKGSSSL---SRT----GYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCL 196 (212)
T ss_dssp HHHHHHHHT---SCT----THHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHc---CCC----HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 999999977 122 23688999999864 3 89999999999974
No 122
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.15 E-value=5.9e-10 Score=82.07 Aligned_cols=120 Identities=17% Similarity=0.138 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhH
Q 024043 32 AADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSM 110 (273)
Q Consensus 32 A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~ 110 (273)
-++.+...|..+...|+|++|+.+|.+++.+... -..++.++|.+|... ++++|+.+|++++.+....
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----- 71 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE------DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF----- 71 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc-----
Confidence 4577888999999999999999999999988532 247899999999888 9999999999999985433
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHH
Q 024043 111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAA 163 (273)
Q Consensus 111 ~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~ 163 (273)
..++.++|.++..+|++++|+.+|++++++.+..++......++..++.+..
T Consensus 72 -~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 72 -VRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 5689999999999999999999999999998665443444556666665544
No 123
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.14 E-value=1.9e-09 Score=78.64 Aligned_cols=123 Identities=14% Similarity=0.107 Sum_probs=94.8
Q ss_pred CHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC
Q 024043 68 SKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEE 146 (273)
Q Consensus 68 ~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~ 146 (273)
.....+..+..+|.++... ++++|+.+|++++...... +.++..+|.++...|++++|+.++.+++.+....
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~- 79 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN------AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY- 79 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC-
Confidence 3455667788888888766 8999999999998874332 5688899999999999999999999999874322
Q ss_pred CcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCH
Q 024043 147 VTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDV 209 (273)
Q Consensus 147 ~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~ 209 (273)
..++..+|.++..+|++++|+.+|++++...+++. ..+..++.++...|++
T Consensus 80 -----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~-------~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 80 -----SKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNE-------TYKSNLKIAELKLREA 130 (131)
T ss_dssp -----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH-------HHHHHHHHHHHHHTTC
T ss_pred -----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccch-------HHHHHHHHHHHHHhcC
Confidence 46788999999999999999999999876544432 3456677777776654
No 124
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.13 E-value=4.9e-09 Score=89.59 Aligned_cols=199 Identities=12% Similarity=0.082 Sum_probs=137.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHH
Q 024043 35 LFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAAR 113 (273)
Q Consensus 35 ~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~ 113 (273)
++...|.++...|++++|...|++++.+... +. ..++...|.++... ++++|+..|++|+.+.... ..
T Consensus 101 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~ 169 (308)
T 2ond_A 101 LYFAYADYEESRMKYEKVHSIYNRLLAIEDI--DP---TLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR------HH 169 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS--CT---HHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC------TH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcccc--Cc---cHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC------HH
Confidence 4455678888999999999999999986321 11 12778888888776 9999999999998754321 34
Q ss_pred HHHHHHHHHH-hcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhch
Q 024043 114 YYKEIAELYE-SEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGV 192 (273)
Q Consensus 114 ~l~~lg~~~~-~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~ 192 (273)
++...+.+.. ..|++++|+..|++|++.+... ...+..+|.++..+|++++|+.+|++++....-.+ ...
T Consensus 170 ~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p---~~~ 240 (308)
T 2ond_A 170 VYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI------PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP---EKS 240 (308)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTC------HHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG---GGC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCH---HHH
Confidence 4555555533 3699999999999999997642 46789999999999999999999999975311010 012
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCHhHHHHHHHhhhccCCCchhHHHHHH
Q 024043 193 KGHLLNAGICQLCKGDVVAITNALERYQDIAASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLL 256 (273)
Q Consensus 193 ~~~~~~~gl~~l~~gd~~~A~~~~~~~~~ll~a~~~~d~~~~~~~~~~~~~~~~ld~~~~~~l~ 256 (273)
...+...+......|+...|...+++...+.- +..+...+...+..| .+..++|-....|.
T Consensus 241 ~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p--~~~~~~~~~~~~~r~-~~l~~~P~~~~~ln 301 (308)
T 2ond_A 241 GEIWARFLAFESNIGDLASILKVEKRRFTAFR--EEYEGKETALLVDRY-KFMDLYPCSASELK 301 (308)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT--TTTSSCHHHHHHTTT-CBTTBCSSCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc--cccccchHHHHHHHH-HhcccCCCCHHHHH
Confidence 23455666667778999999988888643321 111111233334444 55557776665554
No 125
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.12 E-value=7.7e-10 Score=88.20 Aligned_cols=131 Identities=15% Similarity=0.082 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhH----------HHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 024043 70 HEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSM----------AARYYKEIAELYESEHNIEQTIVFFEKA 138 (273)
Q Consensus 70 ~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~----------~a~~l~~lg~~~~~~g~~~~A~~~y~~A 138 (273)
...+..+...|.++... ++++|+.+|++++.+.....+... ...++.++|.++...|++++|+.+|++|
T Consensus 35 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 114 (198)
T 2fbn_A 35 VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV 114 (198)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 34456677777777655 888888888888776655432221 2578999999999999999999999999
Q ss_pred HHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHH
Q 024043 139 ADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAIT 213 (273)
Q Consensus 139 l~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~ 213 (273)
+.+... ...++..+|.++..+|+|++|+..|++++...+.+. ..+..++.++...++..++.
T Consensus 115 l~~~p~------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 115 LKIDKN------NVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNL-------DIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHSTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCH-------HHHHHHHHHHHHHHHHHC--
T ss_pred HHhCcc------cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcH-------HHHHHHHHHHHHHHHHHHHH
Confidence 998432 246799999999999999999999999987655442 24455666666655554443
No 126
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.11 E-value=1.1e-09 Score=83.59 Aligned_cols=105 Identities=9% Similarity=-0.002 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCc
Q 024043 70 HEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVT 148 (273)
Q Consensus 70 ~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~ 148 (273)
......+..+|.++... ++++|+.+|++++.+.... +.++.++|.++...|++++|+.+|++|+.+....
T Consensus 18 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~--- 88 (148)
T 2vgx_A 18 SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD------SRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE--- 88 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---
T ss_pred HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCccc------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC---
Confidence 34456777888888776 9999999999999875433 4588999999999999999999999999986533
Q ss_pred ccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccc
Q 024043 149 TSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNN 186 (273)
Q Consensus 149 ~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~ 186 (273)
..++..+|.++..+|++++|+..|++++...++++
T Consensus 89 ---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 123 (148)
T 2vgx_A 89 ---PRFPFHAAECLLQXGELAEAESGLFLAQELIANXP 123 (148)
T ss_dssp ---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCG
T ss_pred ---chHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 35689999999999999999999999987766553
No 127
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.10 E-value=2.7e-09 Score=80.55 Aligned_cols=105 Identities=12% Similarity=0.042 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCc
Q 024043 70 HEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVT 148 (273)
Q Consensus 70 ~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~ 148 (273)
......+...|.++... ++++|+.+|++++.+.... ..++..+|.++...|++++|+.+|++|+.+.+..
T Consensus 15 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--- 85 (142)
T 2xcb_A 15 EDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD------ARYFLGLGACRQSLGLYEQALQSYSYGALMDINE--- 85 (142)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCcc------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC---
Confidence 34455667788888666 9999999999999875433 4588999999999999999999999999986533
Q ss_pred ccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccc
Q 024043 149 TSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNN 186 (273)
Q Consensus 149 ~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~ 186 (273)
..++..+|.++..+|++++|+..|++++...++++
T Consensus 86 ---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 120 (142)
T 2xcb_A 86 ---PRFPFHAAECHLQLGDLDGAESGFYSARALAAAQP 120 (142)
T ss_dssp ---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCG
T ss_pred ---cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 25688999999999999999999999987766553
No 128
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.10 E-value=5.7e-09 Score=103.75 Aligned_cols=161 Identities=12% Similarity=0.149 Sum_probs=104.2
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhc
Q 024043 27 SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI 105 (273)
Q Consensus 27 ~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~ 105 (273)
+.|++|..+|++++......+-+-+++..+.+|.+..++..+ -.++.++|.++... ++++|+++|.+|
T Consensus 1063 glyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~----p~vWsqLAKAql~~G~~kEAIdsYiKA------- 1131 (1630)
T 1xi4_A 1063 ELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNE----PAVWSQLAKAQLQKGMVKEAIDSYIKA------- 1131 (1630)
T ss_pred CCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCC----HHHHHHHHHHHHhCCCHHHHHHHHHhc-------
Confidence 566666666665432222222222233334444444444443 35677888888777 999999999886
Q ss_pred CChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc-------------CC---------cccHHHHHHHHHHHHH
Q 024043 106 GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE-------------EV---------TTSANQCKQKVAQYAA 163 (273)
Q Consensus 106 g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~-------------~~---------~~~~~~~~~~~a~~~~ 163 (273)
++ ...+.++|.++...|++++|+++|..|.+.-+.. ++ .... ..+.++|..+.
T Consensus 1132 dD----~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~-ad~~~iGd~le 1206 (1630)
T 1xi4_A 1132 DD----PSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNN-AHIQQVGDRCY 1206 (1630)
T ss_pred CC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCH-HHHHHHHHHHH
Confidence 33 3467789999999999999999998877543211 11 1111 23557888888
Q ss_pred HhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHH
Q 024043 164 ELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALER 218 (273)
Q Consensus 164 ~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~ 218 (273)
..|+|++|+.+|.++. .+.+++.|+...|++..|.+++.+
T Consensus 1207 ~eg~YeeA~~~Y~kA~---------------ny~rLA~tLvkLge~q~AIEaarK 1246 (1630)
T 1xi4_A 1207 DEKMYDAAKLLYNNVS---------------NFGRLASTLVHLGEYQAAVDGARK 1246 (1630)
T ss_pred hcCCHHHHHHHHHhhh---------------HHHHHHHHHHHhCCHHHHHHHHHH
Confidence 8888888888888762 345666777777777777666654
No 129
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.09 E-value=1.7e-09 Score=79.38 Aligned_cols=118 Identities=12% Similarity=0.113 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcc
Q 024043 71 EAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTT 149 (273)
Q Consensus 71 ~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~ 149 (273)
.....+..+|.++... ++++|+.+|++++...... ..++..+|.++...|++++|+.++++++++...
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~----- 82 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD------AKLYSNRAACYTKLLEFQLALKDCEECIQLEPT----- 82 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC------HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-----
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-----
Confidence 3455677777777666 8888888888887654322 567888888888889999999999998887532
Q ss_pred cHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcC
Q 024043 150 SANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKG 207 (273)
Q Consensus 150 ~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~g 207 (273)
...++..+|.++..+|++++|+.+|++++...+.+ ...+..++.++...|
T Consensus 83 -~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 83 -FIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSC-------KEAADGYQRCMMAQY 132 (133)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG-------THHHHHHHHHHHHHT
T ss_pred -chHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCc-------hHHHHHHHHHHHHhc
Confidence 23578888889999999999999998887654433 124455666665554
No 130
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.09 E-value=4.4e-10 Score=89.66 Aligned_cols=131 Identities=15% Similarity=0.110 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHHhcc-CHHHHHHHHHHH
Q 024043 30 EDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESK----------HEAAQAYVDAAHCYKKT-SSNEAISCLEQA 98 (273)
Q Consensus 30 ~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~----------~~aa~~~~~~~~~~~~~-~~~eA~~~~~~A 98 (273)
...+..+...|..+...|+|++|+.+|.+++.+.....+. .-...++.++|.+|... ++++|+.+++++
T Consensus 35 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 114 (198)
T 2fbn_A 35 VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV 114 (198)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3455667777999999999999999999999876543321 11257889999999887 999999999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHH
Q 024043 99 VNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSI 172 (273)
Q Consensus 99 l~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~ 172 (273)
+.+.... ..++..+|.++..+|++++|+.+|++|+++.... ..++..++.++..++++.++.
T Consensus 115 l~~~p~~------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 115 LKIDKNN------VKALYKLGVANMYFGFLEEAKENLYKAASLNPNN------LDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHSTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHHHHHHC--
T ss_pred HHhCccc------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHHHHHHHHHH
Confidence 9985432 4689999999999999999999999999985432 467888999999888888777
No 131
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.08 E-value=4.3e-10 Score=88.11 Aligned_cols=160 Identities=13% Similarity=0.031 Sum_probs=117.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHH
Q 024043 36 FDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARY 114 (273)
Q Consensus 36 ~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~ 114 (273)
+...|..+...|++++|+..|.+++..... ...++..+|.++... ++++|+.++++++.... ++ ..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~------~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p---~~----~~ 75 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQS------RGDVKLAKADCLLETKQFELAQELLATIPLEYQ---DN----SY 75 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHT------SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC---CH----HH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC------cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC---Ch----HH
Confidence 345678888899999999999999987643 246788899999877 99999999999876543 22 12
Q ss_pred HHHHHHHH-HhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchh
Q 024043 115 YKEIAELY-ESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVK 193 (273)
Q Consensus 115 l~~lg~~~-~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~ 193 (273)
....+.+. ...+...+|+..+++|+++.+.. ..++..+|.++...|++++|+..|++++...++. ...
T Consensus 76 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-----~~~ 144 (176)
T 2r5s_A 76 KSLIAKLELHQQAAESPELKRLEQELAANPDN------FELACELAVQYNQVGRDEEALELLWNILKVNLGA-----QDG 144 (176)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT-----TTT
T ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc-----ChH
Confidence 22223221 12233345799999999876432 4678999999999999999999999997544332 122
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHH
Q 024043 194 GHLLNAGICQLCKGDVVAITNALERY 219 (273)
Q Consensus 194 ~~~~~~gl~~l~~gd~~~A~~~~~~~ 219 (273)
..+..++.++...|+.+.|...+++.
T Consensus 145 ~a~~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 145 EVKKTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp HHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 35677888999999999888888775
No 132
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.08 E-value=2.1e-09 Score=97.35 Aligned_cols=150 Identities=14% Similarity=0.111 Sum_probs=111.4
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCC---------hhHHHHHHH
Q 024043 47 KSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGR---------LSMAARYYK 116 (273)
Q Consensus 47 ~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~---------~~~~a~~l~ 116 (273)
+++++|+..|.++.... ...+..+.+.|.++... ++++|+.+|++|+.+...... ....+.++.
T Consensus 248 ~~~~~A~~~~~~~~~~~------~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~ 321 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEK------LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFL 321 (457)
T ss_dssp EEEECCCCGGGSCHHHH------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHH------HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHH
Confidence 34455555555544432 34567788888888777 899999999999988765431 223367999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHH
Q 024043 117 EIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHL 196 (273)
Q Consensus 117 ~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (273)
++|.+|..+|++++|+.+|.+|+++.... ..++.++|.++..+|+|++|+..|++++...+++ ...+
T Consensus 322 nla~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~-------~~a~ 388 (457)
T 1kt0_A 322 NLAMCYLKLREYTKAVECCDKALGLDSAN------EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN-------KAAR 388 (457)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----------CHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCcc------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-------HHHH
Confidence 99999999999999999999999986432 4679999999999999999999999997654443 2356
Q ss_pred HHHHHHHHhcCCHHHHHHH
Q 024043 197 LNAGICQLCKGDVVAITNA 215 (273)
Q Consensus 197 ~~~gl~~l~~gd~~~A~~~ 215 (273)
..++.++...+++.++.+.
T Consensus 389 ~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 389 LQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6778888888877766543
No 133
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.08 E-value=7.3e-10 Score=94.08 Aligned_cols=161 Identities=9% Similarity=-0.063 Sum_probs=127.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHH
Q 024043 36 FDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARY 114 (273)
Q Consensus 36 ~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~ 114 (273)
+...|..+...|++++|...|.+++...... ..++..+|.++... ++++|+.++++++.... + ....
T Consensus 120 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~------~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p---~---~~~~ 187 (287)
T 3qou_A 120 XAQQAMQLMQESNYTDALPLLXDAWQLSNQN------GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ---D---TRYQ 187 (287)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTTSC------HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC---S---HHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCcc------hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc---c---hHHH
Confidence 3456888889999999999999999875322 46788899999877 99999999999976543 1 2234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhh
Q 024043 115 YKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKG 194 (273)
Q Consensus 115 l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~ 194 (273)
....+..+...++.++|+..|++|++..... ..++..+|.++...|++++|+..|++++...++. ....
T Consensus 188 ~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~------~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~-----~~~~ 256 (287)
T 3qou_A 188 GLVAQIELLXQAADTPEIQQLQQQVAENPED------AALATQLALQLHQVGRNEEALELLFGHLRXDLTA-----ADGQ 256 (287)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG-----GGGH
T ss_pred HHHHHHHHHhhcccCccHHHHHHHHhcCCcc------HHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc-----ccch
Confidence 5566666667788999999999999986532 4679999999999999999999999998765543 1234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 024043 195 HLLNAGICQLCKGDVVAITNALERY 219 (273)
Q Consensus 195 ~~~~~gl~~l~~gd~~~A~~~~~~~ 219 (273)
.+.+++.++...|+.+.|...+++.
T Consensus 257 a~~~l~~~~~~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 257 TRXTFQEILAALGTGDALASXYRRQ 281 (287)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 5678888899999988888877764
No 134
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.07 E-value=3.2e-10 Score=88.87 Aligned_cols=150 Identities=13% Similarity=0.082 Sum_probs=109.3
Q ss_pred HHHHHHHHHhhccccCCCCCHHHHHHHHHH--------------HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Q 024043 9 EEFEKKAEKKLNGWGLFGSKYEDAADLFDK--------------AANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQ 74 (273)
Q Consensus 9 ~~l~~~Aek~~k~~~~~~~~~~~A~~~~~~--------------a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~ 74 (273)
+.++..|...+. .|++++|...|.+ .|.++...|++++|+.+|.++..... ++ .
T Consensus 7 ~~~~~~a~~~~~-----~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p---~~----~ 74 (176)
T 2r5s_A 7 EQLLKQVSELLQ-----QGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ---DN----S 74 (176)
T ss_dssp TTHHHHHHHHHH-----TTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC---CH----H
T ss_pred HHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC---Ch----H
Confidence 345555555444 2466677766664 37889999999999999999876542 22 1
Q ss_pred HHHHHHHHH-hc-cCHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHH
Q 024043 75 AYVDAAHCY-KK-TSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSAN 152 (273)
Q Consensus 75 ~~~~~~~~~-~~-~~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~ 152 (273)
.....+.+. .. .+..+|+.++++++.+.+.. ..++..+|.++...|++++|+.+|++++.+.+...+ .
T Consensus 75 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~----~ 144 (176)
T 2r5s_A 75 YKSLIAKLELHQQAAESPELKRLEQELAANPDN------FELACELAVQYNQVGRDEEALELLWNILKVNLGAQD----G 144 (176)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTT----T
T ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccCh----H
Confidence 122223222 12 24456899999999876543 468999999999999999999999999988543321 2
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 024043 153 QCKQKVAQYAAELEQYHKSIEIYEEIAR 180 (273)
Q Consensus 153 ~~~~~~a~~~~~~g~y~~A~~~~~~~~~ 180 (273)
.++..+|.++..+|++++|+..|++++.
T Consensus 145 ~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 145 EVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 5688999999999999999999999864
No 135
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.06 E-value=3.5e-09 Score=93.35 Aligned_cols=128 Identities=8% Similarity=-0.021 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcC----------ChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 024043 73 AQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIG----------RLSMAARYYKEIAELYESEHNIEQTIVFFEKAADM 141 (273)
Q Consensus 73 a~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g----------~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~ 141 (273)
+..+...|.++... ++++|+.+|++|+.+..... .....+.++.++|.++..+|++++|+.+|++|+++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 33455555555444 66666666666666544321 33455678889999999999999999999999987
Q ss_pred HhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHH
Q 024043 142 FQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAIT 213 (273)
Q Consensus 142 ~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~ 213 (273)
... ...++..+|.++..+|+|++|+..|++++...+++. ..+..++.++...++..++.
T Consensus 303 ~p~------~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~-------~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 303 DPS------NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDK-------AIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp CTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred Cch------hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHHHHHHHHH
Confidence 432 246788899999999999999999999876555432 23344555555555555443
No 136
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.06 E-value=3e-09 Score=96.34 Aligned_cols=135 Identities=14% Similarity=0.181 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHH
Q 024043 32 AADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLES---------KHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNM 101 (273)
Q Consensus 32 A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~ 101 (273)
.+..+...|+.+...|+|++|+.+|.+|+.+...... ....+.++.++|.||... ++++|+.+|++|+.+
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 3445667799999999999999999999998765421 223468899999999888 999999999999998
Q ss_pred HHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHH-HHHHH
Q 024043 102 FCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIE-IYEEI 178 (273)
Q Consensus 102 ~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~-~~~~~ 178 (273)
.... +.++.++|.+|..+|++++|+.+|++|+++.... ..++..++.++..++++.+|.. .|++.
T Consensus 347 ~p~~------~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~------~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 347 DSAN------EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN------KAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp STTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----------CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCcc------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6543 5789999999999999999999999999985433 2568899999999999988875 34433
No 137
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.06 E-value=7.1e-09 Score=75.56 Aligned_cols=104 Identities=13% Similarity=0.143 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCC-cc
Q 024043 72 AAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEV-TT 149 (273)
Q Consensus 72 aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~-~~ 149 (273)
.+..+..+|.++... ++++|+.+|++++...... ..++.++|.++...|++++|+.+|++++.+...... ..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 76 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN------MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYR 76 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc------HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHH
Confidence 456677788888666 8888888888888764322 467888899988889999999999999988876432 23
Q ss_pred cHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 024043 150 SANQCKQKVAQYAAELEQYHKSIEIYEEIARQ 181 (273)
Q Consensus 150 ~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~ 181 (273)
....++..+|.++...|++++|+++|++++..
T Consensus 77 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 77 QIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 33677888999999999999999999888754
No 138
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.06 E-value=1.6e-09 Score=95.46 Aligned_cols=129 Identities=12% Similarity=0.174 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHH
Q 024043 33 ADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLE----------SKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNM 101 (273)
Q Consensus 33 ~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~----------~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~ 101 (273)
+..+...|+.+...|+|++|+.+|.+++.+..... .....+.++.++|.+|... ++++|+.+|++|+++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 34566779999999999999999999999766531 4456778999999999888 999999999999986
Q ss_pred HHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHH
Q 024043 102 FCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIE 173 (273)
Q Consensus 102 ~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~ 173 (273)
... -+.++.++|.+|..+|++++|+.+|++|+++.... ..++..++.++..+++++++..
T Consensus 303 ~p~------~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~------~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 303 DPS------NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED------KAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp CTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred Cch------hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHHHHHH
Confidence 432 36789999999999999999999999999986532 3567888899988888887765
No 139
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.05 E-value=6.8e-09 Score=75.67 Aligned_cols=121 Identities=19% Similarity=0.160 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhc-CChh
Q 024043 32 AADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI-GRLS 109 (273)
Q Consensus 32 A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~-g~~~ 109 (273)
....+...|.++...|++++|+.+|.+++..... ...++..+|.++... ++++|+.++++++.+.... ++..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 76 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPT------NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYR 76 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc------cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHH
Confidence 4556777899999999999999999999987422 246788999999777 9999999999999999875 5555
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHh
Q 024043 110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAEL 165 (273)
Q Consensus 110 ~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~ 165 (273)
..+.++.++|.++...|++++|+.+|++++++... ......++.+...+
T Consensus 77 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-------~~~~~~l~~~~~~~ 125 (131)
T 1elr_A 77 QIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-------PDVLKKCQQAEKIL 125 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-------HHHHHHHHHHHHHH
Confidence 56889999999999999999999999999997531 23455555555443
No 140
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.05 E-value=6.3e-09 Score=88.88 Aligned_cols=152 Identities=11% Similarity=0.008 Sum_probs=116.8
Q ss_pred HcCCH-------HHHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHH
Q 024043 45 LAKSW-------DKAGATYVKLAN-CHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYY 115 (273)
Q Consensus 45 ~~~~~-------~~A~~~~~~a~~-~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l 115 (273)
..|++ ++|..+|++|+. +.. .....+...|.++... ++++|...|++++.+... ++ ..++
T Consensus 69 ~~g~~~~~~~~~~~A~~~~~rAl~~~~p------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~---~~~~ 137 (308)
T 2ond_A 69 EKGDMNNAKLFSDEAANIYERAISTLLK------KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI--DP---TLVY 137 (308)
T ss_dssp HTSCCHHHHHHHHHHHHHHHHHHTTTTT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS--CT---HHHH
T ss_pred hccchhhcccchHHHHHHHHHHHHHhCc------ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc--Cc---cHHH
Confidence 45775 899999999998 432 1235677888888766 999999999999985432 21 1288
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHhccchhhhchhh
Q 024043 116 KEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAA-ELEQYHKSIEIYEEIARQSLNNNLLKYGVKG 194 (273)
Q Consensus 116 ~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~-~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~ 194 (273)
.++|.++...|++++|+..|++|++..... ..++...+.+.. ..|++++|+.+|++++...+.+ ..
T Consensus 138 ~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~-------~~ 204 (308)
T 2ond_A 138 IQYMKFARRAEGIKSGRMIFKKAREDARTR------HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI-------PE 204 (308)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHTSTTCC------THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTC-------HH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------HH
Confidence 999999999999999999999999864321 244555555533 3799999999999998766654 24
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043 195 HLLNAGICQLCKGDVVAITNALERYQ 220 (273)
Q Consensus 195 ~~~~~gl~~l~~gd~~~A~~~~~~~~ 220 (273)
.+...+..+...|++.+|+..|++..
T Consensus 205 ~~~~~~~~~~~~g~~~~A~~~~~~al 230 (308)
T 2ond_A 205 YVLAYIDYLSHLNEDNNTRVLFERVL 230 (308)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 56777888889999999999998864
No 141
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.05 E-value=4.6e-09 Score=81.03 Aligned_cols=103 Identities=12% Similarity=0.012 Sum_probs=88.8
Q ss_pred CChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043 106 GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN 185 (273)
Q Consensus 106 g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~ 185 (273)
++....+..+..+|.++...|++++|+.+|++|+++.... ..++..+|.++..+|+|++|+..|++++...+.+
T Consensus 5 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 78 (164)
T 3sz7_A 5 MAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPAN------PIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY 78 (164)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred chhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 4456678899999999999999999999999999986532 4789999999999999999999999998765543
Q ss_pred chhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 024043 186 NLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQD 221 (273)
Q Consensus 186 ~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~ 221 (273)
...++++|.++...|++..|..+|++...
T Consensus 79 -------~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 79 -------SKAWSRLGLARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp -------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34678899999999999999999998743
No 142
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.03 E-value=4.4e-09 Score=75.91 Aligned_cols=117 Identities=19% Similarity=0.304 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcc
Q 024043 71 EAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTT 149 (273)
Q Consensus 71 ~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~ 149 (273)
..+.++..+|.++... ++++|+++|++++..... ...++..+|.++...|++++|+.++++++.+....
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---- 76 (125)
T 1na0_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN------NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN---- 76 (125)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc----
Confidence 3466778888888776 999999999999876432 14578899999999999999999999999874321
Q ss_pred cHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhc
Q 024043 150 SANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCK 206 (273)
Q Consensus 150 ~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~ 206 (273)
..++..+|.++...|++++|+.+|++++...+.++ ..+..++.++...
T Consensus 77 --~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~ 124 (125)
T 1na0_A 77 --AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA-------EAKQNLGNAKQKQ 124 (125)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-------HHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH-------HHHHHHHHHHHhc
Confidence 35788999999999999999999999876554432 2344555555443
No 143
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.03 E-value=7e-09 Score=75.48 Aligned_cols=121 Identities=15% Similarity=0.188 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCCh
Q 024043 30 EDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRL 108 (273)
Q Consensus 30 ~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~ 108 (273)
..-...+...|..+...|++++|+..|.+++..... + ..++..+|.++... ++++|+.++++++.+....
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--- 79 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPA--N----AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY--- 79 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---
T ss_pred hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC--C----HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC---
Confidence 344566777899999999999999999999987432 1 56788899999777 9999999999999874332
Q ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCH
Q 024043 109 SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQY 168 (273)
Q Consensus 109 ~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y 168 (273)
..++..+|.++...|++++|+.+|++++++.... ..++..+|.++..+|++
T Consensus 80 ---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 80 ---SKAYGRMGLALSSLNKHVEAVAYYKKALELDPDN------ETYKSNLKIAELKLREA 130 (131)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHHTTC
T ss_pred ---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccc------hHHHHHHHHHHHHHhcC
Confidence 5689999999999999999999999999985432 35788999999988875
No 144
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=99.02 E-value=4.3e-09 Score=94.59 Aligned_cols=101 Identities=12% Similarity=-0.023 Sum_probs=86.5
Q ss_pred HcCCHHHHHHHHHHHHHHHHH-cC-CHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhc--CChhHHHHHHHHHH
Q 024043 45 LAKSWDKAGATYVKLANCHLK-LE-SKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI--GRLSMAARYYKEIA 119 (273)
Q Consensus 45 ~~~~~~~A~~~~~~a~~~~~~-~~-~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~--g~~~~~a~~l~~lg 119 (273)
..|+|++|...|++++++.++ +| +....+.++.++|.+|... ++++|+.+|++++.++.+. .+....|..++++|
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457899999999999999874 44 4567889999999999877 9999999999999999764 45777889999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHhcc
Q 024043 120 ELYESEHNIEQTIVFFEKAADMFQNE 145 (273)
Q Consensus 120 ~~~~~~g~~~~A~~~y~~Al~~~~~~ 145 (273)
.+|..+|++++|..+|++|+++++..
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~ 415 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVA 415 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998864
No 145
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.01 E-value=1.6e-08 Score=77.13 Aligned_cols=100 Identities=15% Similarity=0.115 Sum_probs=85.4
Q ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchh
Q 024043 109 SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLL 188 (273)
Q Consensus 109 ~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~ 188 (273)
.....++.++|.++...|++++|+.+|++++.+.... ..++..+|.++..+|+|++|+..|++++...++++
T Consensus 18 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-- 89 (148)
T 2vgx_A 18 SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD------SRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEP-- 89 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT--
T ss_pred HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCccc------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc--
Confidence 3456688899999999999999999999999885432 46789999999999999999999999987665543
Q ss_pred hhchhhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 024043 189 KYGVKGHLLNAGICQLCKGDVVAITNALERYQD 221 (273)
Q Consensus 189 ~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~ 221 (273)
..++++|.++...|++..|..+|++...
T Consensus 90 -----~~~~~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 90 -----RFPFHAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp -----HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----hHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3678899999999999999999988744
No 146
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.01 E-value=4.1e-09 Score=77.30 Aligned_cols=119 Identities=17% Similarity=0.193 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChh
Q 024043 31 DAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLS 109 (273)
Q Consensus 31 ~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~ 109 (273)
.-...+...|.++...|++++|+.+|.+++..... ...++..+|.++... ++++|+.++++++.+...
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~----- 82 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK------DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT----- 82 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT------CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-----
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-----
Confidence 33445556789999999999999999999876422 256788999999887 999999999999987543
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcC
Q 024043 110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQ 167 (273)
Q Consensus 110 ~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~ 167 (273)
...++..+|.++...|++++|+.+|++++.+.... ..++..++.++..+|+
T Consensus 83 -~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 83 -FIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSC------KEAADGYQRCMMAQYN 133 (133)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG------THHHHHHHHHHHHHTC
T ss_pred -chHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHHhcC
Confidence 24689999999999999999999999999986533 3567888888887764
No 147
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=99.00 E-value=7.1e-09 Score=93.16 Aligned_cols=136 Identities=10% Similarity=0.087 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-cC-CHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhc
Q 024043 29 YEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLK-LE-SKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI 105 (273)
Q Consensus 29 ~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~-~~-~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~ 105 (273)
|..+.++.... .-+...|+|++|...+++++++..+ +| +....+.++.+++.+|... ++++|+.++++++.++.+.
T Consensus 284 ~~~~~~ll~~i-e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~ 362 (429)
T 3qwp_A 284 WKEVQESLKKI-EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIF 362 (429)
T ss_dssp HHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHH-HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHH
Confidence 34444444443 3455678999999999999988763 34 4567899999999999877 9999999999999999864
Q ss_pred --CChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc-CC-cccHHHHHHHHHHHHHHh
Q 024043 106 --GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE-EV-TTSANQCKQKVAQYAAEL 165 (273)
Q Consensus 106 --g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~-~~-~~~~~~~~~~~a~~~~~~ 165 (273)
.+....|..+.++|.+|..+|++++|+.+|++|+++++.. |. +.....++.+++.+...+
T Consensus 363 lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 363 FPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp SCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 5677789999999999999999999999999999999875 43 456667778888777654
No 148
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=99.00 E-value=7.5e-09 Score=93.00 Aligned_cols=95 Identities=8% Similarity=0.036 Sum_probs=85.4
Q ss_pred CHHHHHHHHHHHHHHHHhc-C-ChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc-C-CcccHHHHHHHHHHHH
Q 024043 87 SSNEAISCLEQAVNMFCDI-G-RLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE-E-VTTSANQCKQKVAQYA 162 (273)
Q Consensus 87 ~~~eA~~~~~~Al~~~~~~-g-~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~-~-~~~~~~~~~~~~a~~~ 162 (273)
+|++|+..|++++++..+. | +....+.++.++|.+|..+|+|++|+.+|++|+++++.. | ++...+..++++|.+|
T Consensus 313 ~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~ 392 (433)
T 3qww_A 313 SPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLY 392 (433)
T ss_dssp CHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Confidence 8999999999999999763 4 456789999999999999999999999999999999975 3 4577889999999999
Q ss_pred HHhcCHHHHHHHHHHHHHH
Q 024043 163 AELEQYHKSIEIYEEIARQ 181 (273)
Q Consensus 163 ~~~g~y~~A~~~~~~~~~~ 181 (273)
..+|+|++|..+|++++..
T Consensus 393 ~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 393 MGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHH
Confidence 9999999999999999643
No 149
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.99 E-value=4.1e-09 Score=78.20 Aligned_cols=100 Identities=19% Similarity=0.184 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccH
Q 024043 73 AQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSA 151 (273)
Q Consensus 73 a~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~ 151 (273)
+..+..+|.++... ++++|+.+|++++.+.... +.++.++|.++...|++++|+.+|++++.+.+. .
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~------~ 76 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV------AVYYTNRALCYLKMQQPEQALADCRRALELDGQ------S 76 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------C
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCc------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch------h
Confidence 56777888888776 9999999999998875443 458999999999999999999999999988643 2
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhc
Q 024043 152 NQCKQKVAQYAAELEQYHKSIEIYEEIARQSLN 184 (273)
Q Consensus 152 ~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~ 184 (273)
..++..+|.++..+|++++|+..|++++...++
T Consensus 77 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 77 VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 467899999999999999999999999866555
No 150
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.98 E-value=2.8e-09 Score=90.39 Aligned_cols=152 Identities=15% Similarity=0.061 Sum_probs=116.7
Q ss_pred HHHHHHHHHhhccccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Q 024043 9 EEFEKKAEKKLNGWGLFGSKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQ 74 (273)
Q Consensus 9 ~~l~~~Aek~~k~~~~~~~~~~~A~~~~~~a--------------~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~ 74 (273)
+.++..|...+. .|++++|...|.++ |.++...|++++|...+.++..... +. ..
T Consensus 118 ~~~~~~a~~~~~-----~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p---~~---~~ 186 (287)
T 3qou_A 118 ELXAQQAMQLMQ-----ESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ---DT---RY 186 (287)
T ss_dssp HHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC---SH---HH
T ss_pred hhHHHHHHHHHh-----CCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc---ch---HH
Confidence 344444444443 36888888888875 6789999999999999999876532 21 23
Q ss_pred HHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHH
Q 024043 75 AYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQ 153 (273)
Q Consensus 75 ~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~ 153 (273)
....++..+... +.++|+..|++++...... ..++.++|.++...|++++|+..|.+++....... ...
T Consensus 187 ~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~------~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~----~~~ 256 (287)
T 3qou_A 187 QGLVAQIELLXQAADTPEIQQLQQQVAENPED------AALATQLALQLHQVGRNEEALELLFGHLRXDLTAA----DGQ 256 (287)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGG----GGH
T ss_pred HHHHHHHHHHhhcccCccHHHHHHHHhcCCcc------HHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccc----cch
Confidence 344445445444 7888999999999886543 34899999999999999999999999999865442 136
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 024043 154 CKQKVAQYAAELEQYHKSIEIYEEIARQ 181 (273)
Q Consensus 154 ~~~~~a~~~~~~g~y~~A~~~~~~~~~~ 181 (273)
++..++.++..+|+.++|+..|++++..
T Consensus 257 a~~~l~~~~~~~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 257 TRXTFQEILAALGTGDALASXYRRQLYA 284 (287)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 7899999999999999999999998643
No 151
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.97 E-value=2e-08 Score=75.67 Aligned_cols=100 Identities=11% Similarity=0.109 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhh
Q 024043 110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLK 189 (273)
Q Consensus 110 ~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~ 189 (273)
.....+..+|.++...|++++|+.+|++++.+.+.. ..++..+|.++..+|+|++|+..|++++...+.++
T Consensus 16 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--- 86 (142)
T 2xcb_A 16 DTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD------ARYFLGLGACRQSLGLYEQALQSYSYGALMDINEP--- 86 (142)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT---
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCcc------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc---
Confidence 345678889999999999999999999999875422 46789999999999999999999999987666543
Q ss_pred hchhhHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 024043 190 YGVKGHLLNAGICQLCKGDVVAITNALERYQDI 222 (273)
Q Consensus 190 ~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~l 222 (273)
..++++|.++...|++..|...+++...+
T Consensus 87 ----~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 87 ----RFPFHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp ----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35688999999999999999999987543
No 152
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.96 E-value=1.4e-09 Score=92.01 Aligned_cols=101 Identities=14% Similarity=0.206 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHH
Q 024043 34 DLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAA 112 (273)
Q Consensus 34 ~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a 112 (273)
..+...|..+...|++++|+.+|.+++..... ....+.++|.+|... ++++|+.+|++++.+.... .
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~ 72 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPL------VAVYYTNRALCYLKMQQPEQALADCRRALELDGQS------V 72 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC------H
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------H
Confidence 34556789999999999999999999987432 246888999999887 9999999999999874322 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC
Q 024043 113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQNEE 146 (273)
Q Consensus 113 ~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~ 146 (273)
.++.++|.++..+|++++|+.+|++|+++.....
T Consensus 73 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 106 (281)
T 2c2l_A 73 KAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR 106 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch
Confidence 6899999999999999999999999999987653
No 153
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.95 E-value=6.9e-09 Score=76.12 Aligned_cols=105 Identities=10% Similarity=0.068 Sum_probs=86.1
Q ss_pred HHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHH
Q 024043 75 AYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQ 153 (273)
Q Consensus 75 ~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~ 153 (273)
.+...|.++... ++++|+.+|++++..+... .....++..+|.++...|++++|+.+|++++..+.... ....
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~ 77 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNG---VYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHD---KAAG 77 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSS---TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTST---THHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC---cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCc---ccHH
Confidence 345677777666 9999999999998876532 33457899999999999999999999999999875442 3457
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043 154 CKQKVAQYAAELEQYHKSIEIYEEIARQSLNN 185 (273)
Q Consensus 154 ~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~ 185 (273)
++..+|.++..+|++++|+..|++++...+++
T Consensus 78 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 109 (129)
T 2xev_A 78 GLLKLGLSQYGEGKNTEAQQTLQQVATQYPGS 109 (129)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 89999999999999999999999998766554
No 154
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.95 E-value=2.4e-08 Score=90.24 Aligned_cols=85 Identities=15% Similarity=0.173 Sum_probs=39.8
Q ss_pred HHHHHHcC---CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-----CHHHHHHHHHHHHHHHHhcCChhHH
Q 024043 40 ANSFKLAK---SWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-----SSNEAISCLEQAVNMFCDIGRLSMA 111 (273)
Q Consensus 40 ~~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-----~~~eA~~~~~~Al~~~~~~g~~~~~ 111 (273)
|.+|...| ++++|+..|.++++.- + ..+..+.++|.+|... ++++|+.+|+++. .|+
T Consensus 183 g~~~~~~g~~~~~~~A~~~~~~aa~~g----~--~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-----~g~---- 247 (452)
T 3e4b_A 183 ATVYQKKQQPEQQAELLKQMEAGVSRG----T--VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-----PGY---- 247 (452)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHTT----C--SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-----GGS----
T ss_pred HHHHHHcCCcccHHHHHHHHHHHHHCC----C--HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-----CCC----
Confidence 44555555 5566666666555431 1 1122334455555432 4555555555554 111
Q ss_pred HHHHHHHHHH-H--HhcCCHHHHHHHHHHHH
Q 024043 112 ARYYKEIAEL-Y--ESEHNIEQTIVFFEKAA 139 (273)
Q Consensus 112 a~~l~~lg~~-~--~~~g~~~~A~~~y~~Al 139 (273)
+.++.++|.+ + ...+++++|+.+|++|+
T Consensus 248 ~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa 278 (452)
T 3e4b_A 248 PASWVSLAQLLYDFPELGDVEQMMKYLDNGR 278 (452)
T ss_dssp THHHHHHHHHHHHSGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 2344555554 2 22355555555555554
No 155
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.94 E-value=3.1e-09 Score=78.27 Aligned_cols=96 Identities=7% Similarity=-0.002 Sum_probs=75.5
Q ss_pred HHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHH
Q 024043 76 YVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQC 154 (273)
Q Consensus 76 ~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~ 154 (273)
+...|.++... ++++|+.+|++++.+.... +.++..+|.++...|++++|+.+|++|+++.... ..+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~------~~~ 87 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPER------EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD------IAV 87 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHH
Confidence 44566666555 8889999999888875543 4588899999999999999999999999885432 357
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Q 024043 155 KQKVAQYAAELEQYHKSIEIYEEIARQSL 183 (273)
Q Consensus 155 ~~~~a~~~~~~g~y~~A~~~~~~~~~~~~ 183 (273)
+..+|.++..+|++++|+..|++++...+
T Consensus 88 ~~~la~~~~~~g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 88 HAALAVSHTNEHNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 88999999999999999999999875433
No 156
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.93 E-value=5.4e-08 Score=72.01 Aligned_cols=99 Identities=12% Similarity=0.029 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhh
Q 024043 111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKY 190 (273)
Q Consensus 111 ~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~ 190 (273)
.+..+..+|.++...|++++|+.+|++++.+.... ..++..+|.++..+|+|++|+..|++++...+++
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~----- 76 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV------AVYYTNRALCYLKMQQPEQALADCRRALELDGQS----- 76 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCc------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh-----
Confidence 36788999999999999999999999999986432 4689999999999999999999999998755443
Q ss_pred chhhHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 024043 191 GVKGHLLNAGICQLCKGDVVAITNALERYQDI 222 (273)
Q Consensus 191 ~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~l 222 (273)
...++.+|.++...|++..|...+++...+
T Consensus 77 --~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 77 --VKAHFFLGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 246788999999999999999999887543
No 157
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.92 E-value=3.2e-09 Score=94.87 Aligned_cols=190 Identities=11% Similarity=0.084 Sum_probs=71.9
Q ss_pred CCHHHHHHHHHHH---------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHH
Q 024043 27 SKYEDAADLFDKA---------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLE 96 (273)
Q Consensus 27 ~~~~~A~~~~~~a---------~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~ 96 (273)
+++++|++.|.++ +..+...|+|++|+.++..+.+. .++ +.+...++.+|.+. ++.++.++++
T Consensus 46 g~~~eAIdsfika~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~---~~~----~~i~~~Li~~Y~Klg~l~e~e~f~~ 118 (449)
T 1b89_A 46 GMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKK---ARE----SYVETELIFALAKTNRLAELEEFIN 118 (449)
T ss_dssp ----------------------------------------------------------------------CHHHHTTTTT
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---Ccc----chhHHHHHHHHHHhCCHHHHHHHHc
Confidence 5666666666654 33445566666666655555542 111 23344455555554 5555554443
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 024043 97 QAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYE 176 (273)
Q Consensus 97 ~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~ 176 (273)
. +.. .++.++|..+...|.+++|..+|.++ ..+.++|.++.++|+|++|++.|+
T Consensus 119 ~----------pn~--~a~~~IGd~~~~~g~yeeA~~~Y~~a--------------~n~~~LA~~L~~Lg~yq~AVea~~ 172 (449)
T 1b89_A 119 G----------PNN--AHIQQVGDRCYDEKMYDAAKLLYNNV--------------SNFGRLASTLVHLGEYQAAVDGAR 172 (449)
T ss_dssp C----------C------------------CTTTHHHHHHHT--------------TCHHHHHHHHHTTTCHHHHHHHHH
T ss_pred C----------CcH--HHHHHHHHHHHHcCCHHHHHHHHHHh--------------hhHHHHHHHHHHhccHHHHHHHHH
Confidence 1 111 27888888888888888888888765 247778888888888888888888
Q ss_pred HHHHH---------Hhccc---------hhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH-----------HHHHHHh
Q 024043 177 EIARQ---------SLNNN---------LLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ-----------DIAASMD 227 (273)
Q Consensus 177 ~~~~~---------~~~~~---------~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~-----------~ll~a~~ 227 (273)
++... +.... ..-....+.+..++.+|...|.+++|...++... .+--++.
T Consensus 173 KA~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ 252 (449)
T 1b89_A 173 KANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYS 252 (449)
T ss_dssp HHTCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred HcCCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 77311 00000 0000001112234456677777777777777643 2222345
Q ss_pred hcCHhHHHHHHHhhhccCCCch
Q 024043 228 EEDIAKFTDVVKEFDSMTPLDP 249 (273)
Q Consensus 228 ~~d~~~~~~~~~~~~~~~~ld~ 249 (273)
+=.++++.+.++.|-+-..+.|
T Consensus 253 ky~p~k~~ehl~~~~~~ini~k 274 (449)
T 1b89_A 253 KFKPQKMREHLELFWSRVNIPK 274 (449)
T ss_dssp TTCHHHHHHHHHHHSTTSCHHH
T ss_pred hcCHHHHHHHHHHHHHHhcCcH
Confidence 5667888888888877777766
No 158
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.92 E-value=2.5e-09 Score=83.36 Aligned_cols=123 Identities=15% Similarity=0.164 Sum_probs=95.6
Q ss_pred HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHH-H
Q 024043 45 LAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAEL-Y 122 (273)
Q Consensus 45 ~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~-~ 122 (273)
..|++++|+..+.+++.... .+ ..++..+|.+|... ++++|+.+|++++.+.... ..++..+|.+ +
T Consensus 22 ~~~~~~~A~~~~~~al~~~p--~~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~l~ 89 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANP--QN----SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN------AELYAALATVLY 89 (177)
T ss_dssp -----CCCCHHHHHHHHHCC--SC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC------HHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCC--Cc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHH
Confidence 35667777777777776532 11 35788899999777 9999999999999987543 4588999999 7
Q ss_pred HhcCCH--HHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043 123 ESEHNI--EQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN 185 (273)
Q Consensus 123 ~~~g~~--~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~ 185 (273)
...|++ ++|+.+|++++++.... ..++..+|.++...|++++|+..|++++...+.+
T Consensus 90 ~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 90 YQASQHMTAQTRAMIDKALALDSNE------ITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHTTTCCCHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HhcCCcchHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 788999 99999999999985422 4678999999999999999999999998655443
No 159
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.92 E-value=5.4e-09 Score=81.48 Aligned_cols=115 Identities=7% Similarity=0.100 Sum_probs=95.6
Q ss_pred CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHH-HHHh
Q 024043 87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQY-AAEL 165 (273)
Q Consensus 87 ~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~-~~~~ 165 (273)
++++|+.++++++...... +.++..+|.++...|++++|+.+|++++.+.... ..++..+|.+ +...
T Consensus 25 ~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~l~~~~ 92 (177)
T 2e2e_A 25 NPEAQLQALQDKIRANPQN------SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN------AELYAALATVLYYQA 92 (177)
T ss_dssp --CCCCHHHHHHHHHCCSC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC------HHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHhc
Confidence 7889999999999875432 4589999999999999999999999999987532 4678899999 8899
Q ss_pred cCH--HHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043 166 EQY--HKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ 220 (273)
Q Consensus 166 g~y--~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~ 220 (273)
|++ ++|+.+|++++...+.+ ...++.+|.++...|++..|...+++..
T Consensus 93 ~~~~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al 142 (177)
T 2e2e_A 93 SQHMTAQTRAMIDKALALDSNE-------ITALMLLASDAFMQANYAQAIELWQKVM 142 (177)
T ss_dssp TTCCCHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 999 99999999998765543 2356788999999999999999988864
No 160
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.90 E-value=3.3e-09 Score=77.27 Aligned_cols=91 Identities=13% Similarity=0.181 Sum_probs=73.4
Q ss_pred CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhc
Q 024043 87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE 166 (273)
Q Consensus 87 ~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g 166 (273)
++++|+.+|++++.+. .+....+.++.++|.++...|++++|+.+|++|+++.+.. ..++..+|.++..+|
T Consensus 5 ~~~~A~~~~~~al~~~---~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g 75 (117)
T 3k9i_A 5 LEAQAVPYYEKAIASG---LQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH------QALRVFYAMVLYNLG 75 (117)
T ss_dssp --CCCHHHHHHHHSSC---CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHcC---CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHHcC
Confidence 6788999999998752 1123456789999999999999999999999999986543 467889999999999
Q ss_pred CHHHHHHHHHHHHHHHhccc
Q 024043 167 QYHKSIEIYEEIARQSLNNN 186 (273)
Q Consensus 167 ~y~~A~~~~~~~~~~~~~~~ 186 (273)
++++|+..|++++...++++
T Consensus 76 ~~~~A~~~~~~al~~~p~~~ 95 (117)
T 3k9i_A 76 RYEQGVELLLKIIAETSDDE 95 (117)
T ss_dssp CHHHHHHHHHHHHHHHCCCH
T ss_pred CHHHHHHHHHHHHHhCCCcH
Confidence 99999999999987666553
No 161
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.90 E-value=3.2e-08 Score=88.91 Aligned_cols=108 Identities=3% Similarity=-0.048 Sum_probs=91.0
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHhc-C-ChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc--CCcc
Q 024043 74 QAYVDAAHCYKKTSSNEAISCLEQAVNMFCDI-G-RLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE--EVTT 149 (273)
Q Consensus 74 ~~~~~~~~~~~~~~~~eA~~~~~~Al~~~~~~-g-~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~--~~~~ 149 (273)
..+..+..++...++++|+..|++++++..+. | +....+.++.++|.+|..+|++++|+.+|++++++++.. .++.
T Consensus 289 ~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp 368 (429)
T 3qwp_A 289 ESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHP 368 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCCh
Confidence 34444555555569999999999999987543 3 455689999999999999999999999999999999874 3457
Q ss_pred cHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 024043 150 SANQCKQKVAQYAAELEQYHKSIEIYEEIARQ 181 (273)
Q Consensus 150 ~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~ 181 (273)
..+..+.++|.+|..+|+|++|+.+|++++..
T Consensus 369 ~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 369 VRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 77899999999999999999999999999643
No 162
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.90 E-value=4.4e-08 Score=82.78 Aligned_cols=101 Identities=19% Similarity=0.185 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccH
Q 024043 73 AQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSA 151 (273)
Q Consensus 73 a~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~ 151 (273)
+..+...|.++... ++++|+.+|++++.+.... +.++.++|.++..+|++++|+..|++|+++... .
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~ 71 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV------AVYYTNRALCYLKMQQPEQALADCRRALELDGQ------S 71 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT------C
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------C
Confidence 45677888888777 9999999999999975432 568999999999999999999999999987432 2
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043 152 NQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN 185 (273)
Q Consensus 152 ~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~ 185 (273)
..++..+|.++..+|++++|+..|++++...+++
T Consensus 72 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 72 VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 4678999999999999999999999998766655
No 163
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.90 E-value=2.1e-08 Score=71.58 Aligned_cols=100 Identities=13% Similarity=0.160 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccH
Q 024043 73 AQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSA 151 (273)
Q Consensus 73 a~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~ 151 (273)
+..+...|.++... ++++|+.+|++++...... ..++..+|.++...|++++|+.++++++++... .
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~ 71 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN------HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD------W 71 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------C
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc------c
Confidence 45677788888766 9999999999998875432 458899999999999999999999999988542 2
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhc
Q 024043 152 NQCKQKVAQYAAELEQYHKSIEIYEEIARQSLN 184 (273)
Q Consensus 152 ~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~ 184 (273)
..++..+|.++..+|++++|+..|++++...++
T Consensus 72 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 104 (118)
T 1elw_A 72 GKGYSRKAAALEFLNRFEEAKRTYEEGLKHEAN 104 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence 467899999999999999999999998754443
No 164
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.89 E-value=1.1e-09 Score=99.91 Aligned_cols=125 Identities=14% Similarity=0.129 Sum_probs=72.9
Q ss_pred HHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHH
Q 024043 74 QAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSAN 152 (273)
Q Consensus 74 ~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~ 152 (273)
..+.++|.++... ++++|+++|++|+++.... +.++.++|.++..+|++++|+.+|++|+++... ..
T Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~------~~ 74 (477)
T 1wao_1 7 EELKTQANDYFKAKDYENAIKFYSQAIELNPSN------AIYYGNRSLAYLRTECYGYALGDATRAIELDKK------YI 74 (477)
T ss_dssp TTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT------CH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------CH
Confidence 3444455555544 7777777777777663322 456777777777777777777777777766321 13
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHH--HHhcCCHHHHHHHHH
Q 024043 153 QCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGIC--QLCKGDVVAITNALE 217 (273)
Q Consensus 153 ~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~--~l~~gd~~~A~~~~~ 217 (273)
.++.++|.++..+|+|++|++.|++++...+++. ..+..++.+ +...|++.+|...++
T Consensus 75 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~-------~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 75 KGYYRRAASNMALGKFRAALRDYETVVKVKPHDK-------DAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCT-------THHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 5566777777777777777777777765444332 123344444 555666666666655
No 165
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.89 E-value=1.6e-07 Score=84.82 Aligned_cols=156 Identities=14% Similarity=0.049 Sum_probs=121.0
Q ss_pred CHHHHHHHHHHH--------------HHHHHHc----CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh---cc
Q 024043 28 KYEDAADLFDKA--------------ANSFKLA----KSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYK---KT 86 (273)
Q Consensus 28 ~~~~A~~~~~~a--------------~~~~~~~----~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~---~~ 86 (273)
++++|..+|.++ |.+|... +++++|+.+|.+++ .|+ ..++.++|.+|. ..
T Consensus 194 ~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-----~g~----~~a~~~Lg~~~~~~~~~ 264 (452)
T 3e4b_A 194 QQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-----PGY----PASWVSLAQLLYDFPEL 264 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-----GGS----THHHHHHHHHHHHSGGG
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-----CCC----HHHHHHHHHHHHhCCCC
Confidence 899999999876 3444433 69999999999987 233 467889999843 23
Q ss_pred -CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHH
Q 024043 87 -SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEH-----NIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQ 160 (273)
Q Consensus 87 -~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g-----~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~ 160 (273)
++++|+.+|++|++ .|+ +.++.++|.+|.. | ++++|+.+|++|+ .++ ..++.++|.
T Consensus 265 ~d~~~A~~~~~~Aa~----~g~----~~A~~~Lg~~y~~-G~g~~~d~~~A~~~~~~Aa-----~g~----~~A~~~Lg~ 326 (452)
T 3e4b_A 265 GDVEQMMKYLDNGRA----ADQ----PRAELLLGKLYYE-GKWVPADAKAAEAHFEKAV-----GRE----VAADYYLGQ 326 (452)
T ss_dssp CCHHHHHHHHHHHHH----TTC----HHHHHHHHHHHHH-CSSSCCCHHHHHHHHHTTT-----TTC----HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH----CCC----HHHHHHHHHHHHc-CCCCCCCHHHHHHHHHHHh-----CCC----HHHHHHHHH
Confidence 99999999999984 443 5688999999995 6 9999999999998 222 467899999
Q ss_pred HHHH----hcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHh----cCCHHHHHHHHHHH
Q 024043 161 YAAE----LEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLC----KGDVVAITNALERY 219 (273)
Q Consensus 161 ~~~~----~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~----~gd~~~A~~~~~~~ 219 (273)
+|.. ..++++|+.+|++++. .+ .....+++|.+|.. ..|+..|...++..
T Consensus 327 ~y~~G~g~~~d~~~A~~~~~~Aa~--~g-------~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 384 (452)
T 3e4b_A 327 IYRRGYLGKVYPQKALDHLLTAAR--NG-------QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLA 384 (452)
T ss_dssp HHHTTTTSSCCHHHHHHHHHHHHT--TT-------CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHH
T ss_pred HHHCCCCCCcCHHHHHHHHHHHHh--hC-------hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 8887 3499999999999964 22 23466788888764 45888888888775
No 166
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.89 E-value=1.2e-09 Score=78.05 Aligned_cols=99 Identities=11% Similarity=0.074 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccH
Q 024043 73 AQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSA 151 (273)
Q Consensus 73 a~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~ 151 (273)
+..+..+|.++... ++++|+++|++++.+.... +.++.++|.++..+|++++|+.+|++|+++.+..+.....
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 77 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQN------PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIR 77 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHH
Confidence 56778889888777 9999999999999875433 5689999999999999999999999999998776555555
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHH
Q 024043 152 NQCKQKVAQYAAELEQYHKSIEIYEE 177 (273)
Q Consensus 152 ~~~~~~~a~~~~~~g~y~~A~~~~~~ 177 (273)
..++..+|.++..+|+++.|++.+++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 78 SKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 78889999999999988887766544
No 167
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.88 E-value=3.2e-08 Score=72.46 Aligned_cols=100 Identities=10% Similarity=0.136 Sum_probs=83.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchh
Q 024043 114 YYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVK 193 (273)
Q Consensus 114 ~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~ 193 (273)
.+..+|.++...|++++|+..|++++..++.. .....++..+|.++...|+|++|+..|++++...++++ ...
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~----~~~ 76 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNG---VYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHD----KAA 76 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSS---TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTST----THH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC---cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCc----ccH
Confidence 56788999999999999999999999887643 23457899999999999999999999999987655542 124
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043 194 GHLLNAGICQLCKGDVVAITNALERYQ 220 (273)
Q Consensus 194 ~~~~~~gl~~l~~gd~~~A~~~~~~~~ 220 (273)
..++.+|.++...|++..|...+++..
T Consensus 77 ~~~~~la~~~~~~g~~~~A~~~~~~~~ 103 (129)
T 2xev_A 77 GGLLKLGLSQYGEGKNTEAQQTLQQVA 103 (129)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 567889999999999999999988763
No 168
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.86 E-value=4e-08 Score=70.73 Aligned_cols=117 Identities=19% Similarity=0.306 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhH
Q 024043 32 AADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSM 110 (273)
Q Consensus 32 A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~ 110 (273)
....+...|.++...|++++|...|.++...... ...++..+|.++... ++++|+.++++++.+....
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----- 76 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN------NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN----- 76 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc-----
Confidence 3556677899999999999999999999876421 235778899999777 9999999999999874322
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhc
Q 024043 111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE 166 (273)
Q Consensus 111 ~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g 166 (273)
..++..+|.++...|++++|+.+|++++.+.... ..++..+|.++...|
T Consensus 77 -~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 77 -AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN------AEAKQNLGNAKQKQG 125 (125)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHhcc
Confidence 4578899999999999999999999999885422 356777888776654
No 169
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.86 E-value=6.7e-08 Score=72.13 Aligned_cols=104 Identities=11% Similarity=0.010 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccH
Q 024043 73 AQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSA 151 (273)
Q Consensus 73 a~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~ 151 (273)
+..+...|.++... ++++|+.+|++++.+. .+......++.++|.++...|++++|+.+|++++.+....
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------ 98 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLD---ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD------ 98 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC---CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc---ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC------
Confidence 45666777777666 8888888888887653 2233346788899999999999999999999999875322
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043 152 NQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN 185 (273)
Q Consensus 152 ~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~ 185 (273)
..++..+|.++..+|++++|+.+|++++...+.+
T Consensus 99 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 132 (148)
T 2dba_A 99 VKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKN 132 (148)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 4678889999999999999999999987655443
No 170
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.85 E-value=4e-09 Score=91.70 Aligned_cols=142 Identities=16% Similarity=0.112 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC------CHHH-----HHHHHHHHHHHHhcc-CHHHHHHHHHHHH
Q 024043 32 AADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLE------SKHE-----AAQAYVDAAHCYKKT-SSNEAISCLEQAV 99 (273)
Q Consensus 32 A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~------~~~~-----aa~~~~~~~~~~~~~-~~~eA~~~~~~Al 99 (273)
.+..+...|+.+...|+|++|+.+|.+++.+..... .... ...++.++|.||... ++++|+.+|++++
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444555668888888899999999998887643211 0111 113788899999887 9999999999999
Q ss_pred HHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Q 024043 100 NMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYA-AELEQYHKSIEIYEEI 178 (273)
Q Consensus 100 ~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~-~~~g~y~~A~~~~~~~ 178 (273)
.+.... ..++.++|.+|..+|++++|+.+|++|+++.... ..++..++.+. ...+.++++...|.++
T Consensus 258 ~~~p~~------~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~------~~a~~~L~~l~~~~~~~~~~a~~~~~~~ 325 (338)
T 2if4_A 258 TEEEKN------PKALFRRGKAKAELGQMDSARDDFRKAQKYAPDD------KAIRRELRALAEQEKALYQKQKEMYKGI 325 (338)
T ss_dssp HHCTTC------HHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------------------
T ss_pred HhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 875432 4688999999999999999999999998886543 24456666663 3456778888888887
Q ss_pred HHHHhcc
Q 024043 179 ARQSLNN 185 (273)
Q Consensus 179 ~~~~~~~ 185 (273)
+...+.+
T Consensus 326 l~~~p~~ 332 (338)
T 2if4_A 326 FKGKDEG 332 (338)
T ss_dssp -------
T ss_pred hCCCCCC
Confidence 6544443
No 171
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.84 E-value=1.3e-09 Score=99.27 Aligned_cols=120 Identities=16% Similarity=0.159 Sum_probs=93.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHH
Q 024043 39 AANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKE 117 (273)
Q Consensus 39 a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~ 117 (273)
.|..+...|+|++|+.+|.+++++... .+.++.++|.+|... ++++|+++|++|+++... -+.++.+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~------~~~~~~~ 79 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPS------NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK------YIKGYYR 79 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT------CHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCc------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------CHHHHHH
Confidence 355666778888888888888877422 267889999999888 999999999999987432 2568999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHH--HHHhcCHHHHHHHHH
Q 024043 118 IAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQY--AAELEQYHKSIEIYE 176 (273)
Q Consensus 118 lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~--~~~~g~y~~A~~~~~ 176 (273)
+|.+|..+|++++|+.+|++|+++..... .++..++.+ +...|++++|++.++
T Consensus 80 lg~~~~~~g~~~eA~~~~~~al~~~p~~~------~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 80 RAASNMALGKFRAALRDYETVVKVKPHDK------DAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCT------THHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999865432 345666766 888999999999999
No 172
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.84 E-value=4e-08 Score=72.19 Aligned_cols=94 Identities=11% Similarity=0.004 Sum_probs=80.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchh
Q 024043 114 YYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVK 193 (273)
Q Consensus 114 ~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~ 193 (273)
.+..+|..+...|++++|+..|++|+.+.... ..++..+|.++..+|++++|+..|++++...+++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~------- 85 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPER------EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI------- 85 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-------
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------
Confidence 46778999999999999999999999986432 46789999999999999999999999987666542
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043 194 GHLLNAGICQLCKGDVVAITNALERYQ 220 (273)
Q Consensus 194 ~~~~~~gl~~l~~gd~~~A~~~~~~~~ 220 (273)
..+..+|.++...|++.+|...+++..
T Consensus 86 ~~~~~la~~~~~~g~~~~A~~~~~~al 112 (121)
T 1hxi_A 86 AVHAALAVSHTNEHNANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 366788999999999999999888753
No 173
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.82 E-value=1.3e-07 Score=67.35 Aligned_cols=96 Identities=11% Similarity=-0.011 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhh
Q 024043 111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKY 190 (273)
Q Consensus 111 ~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~ 190 (273)
.+..+..+|.++...|++++|+.+|++++...+.. ..++..+|.++...|++++|+..+++++...+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----- 71 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN------HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW----- 71 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-----
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc-----
Confidence 35678899999999999999999999999886432 4678999999999999999999999998654433
Q ss_pred chhhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 024043 191 GVKGHLLNAGICQLCKGDVVAITNALERY 219 (273)
Q Consensus 191 ~~~~~~~~~gl~~l~~gd~~~A~~~~~~~ 219 (273)
...+..+|.++...|++..|...+++.
T Consensus 72 --~~~~~~~a~~~~~~~~~~~A~~~~~~~ 98 (118)
T 1elw_A 72 --GKGYSRKAAALEFLNRFEEAKRTYEEG 98 (118)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 245678899999999999999988876
No 174
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.81 E-value=3.1e-09 Score=75.45 Aligned_cols=98 Identities=9% Similarity=0.076 Sum_probs=80.0
Q ss_pred HHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHH
Q 024043 74 QAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSAN 152 (273)
Q Consensus 74 ~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~ 152 (273)
..+..+|.++... ++++|+.+|++++.+.... ..++.++|.++...|++++|+.+|++++++.... ...
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~ 76 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEE------SKYWLMKGKALYNLERYEEAVDCYNYVINVIEDE----YNK 76 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCT----TCH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccc----chH
Confidence 3456778888776 9999999999998875322 4578899999999999999999999999885430 124
Q ss_pred HHHHHHHHHHHHh-cCHHHHHHHHHHHHHH
Q 024043 153 QCKQKVAQYAAEL-EQYHKSIEIYEEIARQ 181 (273)
Q Consensus 153 ~~~~~~a~~~~~~-g~y~~A~~~~~~~~~~ 181 (273)
.++..+|.++..+ |++++|++++++++..
T Consensus 77 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 77 DVWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 6789999999999 9999999999998643
No 175
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.81 E-value=6.6e-09 Score=90.35 Aligned_cols=110 Identities=14% Similarity=0.044 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcC------ChhHH-----HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 024043 70 HEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIG------RLSMA-----ARYYKEIAELYESEHNIEQTIVFFEK 137 (273)
Q Consensus 70 ~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g------~~~~~-----a~~l~~lg~~~~~~g~~~~A~~~y~~ 137 (273)
...+..+...|.++... ++++|+.+|++|+.+..... +...+ ..++.++|.+|..+|++++|+.+|++
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~ 255 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI 255 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34567788899999877 99999999999998754321 11111 13899999999999999999999999
Q ss_pred HHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043 138 AADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN 185 (273)
Q Consensus 138 Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~ 185 (273)
|+++... ...++.++|.++..+|+|++|+..|++++...+++
T Consensus 256 al~~~p~------~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~ 297 (338)
T 2if4_A 256 VLTEEEK------NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDD 297 (338)
T ss_dssp HHHHCTT------CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----
T ss_pred HHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 9998542 24679999999999999999999999997554443
No 176
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.81 E-value=5.7e-08 Score=73.18 Aligned_cols=108 Identities=13% Similarity=0.238 Sum_probs=88.3
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHh-
Q 024043 47 KSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYES- 124 (273)
Q Consensus 47 ~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~- 124 (273)
+++++|+..|.++++. |++.. . +|.+|... .+++|+++|++|.+. |+ +.+..++|.+|..
T Consensus 9 ~d~~~A~~~~~~aa~~----g~~~a----~--lg~~y~~g~~~~~A~~~~~~Aa~~----g~----~~a~~~Lg~~y~~G 70 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL----NEMFG----C--LSLVSNSQINKQKLFQYLSKACEL----NS----GNGCRFLGDFYENG 70 (138)
T ss_dssp HHHHHHHHHHHHHHHT----TCTTH----H--HHHHTCTTSCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHcC----CCHhh----h--HHHHHHcCCCHHHHHHHHHHHHcC----CC----HHHHHHHHHHHHcC
Confidence 4677788888887754 34322 2 89999887 888899999999874 44 5788999999998
Q ss_pred ---cCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHH
Q 024043 125 ---EHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAE----LEQYHKSIEIYEEIAR 180 (273)
Q Consensus 125 ---~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~----~g~y~~A~~~~~~~~~ 180 (273)
.+++++|+.+|++|++. ++ ..++.++|.+|.. .+++++|+++|+++..
T Consensus 71 ~g~~~d~~~A~~~~~~Aa~~----g~----~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 71 KYVKKDLRKAAQYYSKACGL----ND----QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp SSSCCCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHcC----CC----HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence 78999999999999875 32 4678999999999 8999999999999964
No 177
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.80 E-value=4.5e-08 Score=87.42 Aligned_cols=189 Identities=8% Similarity=0.032 Sum_probs=84.8
Q ss_pred HhhHHHHHHHHHHhhcccc-----CCC-CCHHHHHHHHHHHH-------------HHHHHcCCHHHHHHHHHHHHHHHHH
Q 024043 5 IARAEEFEKKAEKKLNGWG-----LFG-SKYEDAADLFDKAA-------------NSFKLAKSWDKAGATYVKLANCHLK 65 (273)
Q Consensus 5 ~~~a~~l~~~Aek~~k~~~-----~~~-~~~~~A~~~~~~a~-------------~~~~~~~~~~~A~~~~~~a~~~~~~ 65 (273)
+++|.+.+-+++-.- ++. .-. |+|++|..++..+- .+|...|+++++.+++..
T Consensus 48 ~~eAIdsfika~D~~-~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~------- 119 (449)
T 1b89_A 48 VKEAIDSYIKADDPS-SYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFING------- 119 (449)
T ss_dssp --------------------------------------------------------------CHHHHTTTTTC-------
T ss_pred HHHHHHHHHcCCCHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHcC-------
Confidence 566666666554322 211 111 78888888776542 367777777776665532
Q ss_pred cCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH--
Q 024043 66 LESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMF-- 142 (273)
Q Consensus 66 ~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~-- 142 (273)
++ . .++..+|..+... .+++|+.+|.++ ..+.++|.++..+|++++|++.|++|...-
T Consensus 120 -pn--~--~a~~~IGd~~~~~g~yeeA~~~Y~~a--------------~n~~~LA~~L~~Lg~yq~AVea~~KA~~~~~W 180 (449)
T 1b89_A 120 -PN--N--AHIQQVGDRCYDEKMYDAAKLLYNNV--------------SNFGRLASTLVHLGEYQAAVDGARKANSTRTW 180 (449)
T ss_dssp -C--------------------CTTTHHHHHHHT--------------TCHHHHHHHHHTTTCHHHHHHHHHHHTCHHHH
T ss_pred -Cc--H--HHHHHHHHHHHHcCCHHHHHHHHHHh--------------hhHHHHHHHHHHhccHHHHHHHHHHcCCchhH
Confidence 11 1 2778888888666 888888888866 257788888888888888888888873220
Q ss_pred h-------ccCC----------cccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHh
Q 024043 143 Q-------NEEV----------TTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLC 205 (273)
Q Consensus 143 ~-------~~~~----------~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~ 205 (273)
. ..++ ....+.-+..+..+|.+.|++++|+.+++.++... ......+..+++++..
T Consensus 181 k~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-------~ah~~~ftel~il~~k 253 (449)
T 1b89_A 181 KEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-------RAHMGMFTELAILYSK 253 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-------TCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-------HHHHHHHHHHHHHHHh
Confidence 0 0000 00001123345578899999999999999885321 1234466777776655
Q ss_pred cCCHHHHHHHHHHHH------HHHHHHhh
Q 024043 206 KGDVVAITNALERYQ------DIAASMDE 228 (273)
Q Consensus 206 ~gd~~~A~~~~~~~~------~ll~a~~~ 228 (273)
- .+++..++++-|. ++|.+++.
T Consensus 254 y-~p~k~~ehl~~~~~~ini~k~~~~~~~ 281 (449)
T 1b89_A 254 F-KPQKMREHLELFWSRVNIPKVLRAAEQ 281 (449)
T ss_dssp T-CHHHHHHHHHHHSTTSCHHHHHHHHHT
T ss_pred c-CHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 4 5777778877765 56666554
No 178
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.80 E-value=1.4e-07 Score=86.44 Aligned_cols=164 Identities=11% Similarity=0.086 Sum_probs=116.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 024043 40 ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEI 118 (273)
Q Consensus 40 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~l 118 (273)
+.++...|++++|...|++++.+.. .+ ...++...+.++... ++++|+..|++|+..... ....+...
T Consensus 328 ~~~~~~~g~~~~A~~~~~~al~~~p--~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~------~~~~~~~~ 396 (530)
T 2ooe_A 328 ADYEESRMKYEKVHSIYNRLLAIED--ID---PTLVYIQYMKFARRAEGIKSGRMIFKKAREDART------RHHVYVTA 396 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSSS--SC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC------CTHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHhCccc--cC---chHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC------chHHHHHH
Confidence 4567788999999999999987521 12 134777888887666 899999999999875221 12233333
Q ss_pred HHH-HHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHH
Q 024043 119 AEL-YESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLL 197 (273)
Q Consensus 119 g~~-~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (273)
+.+ +...|++++|...|++|++.+... ..++..++.++...|++++|..+|++++...+.++ ......+.
T Consensus 397 a~~~~~~~~~~~~A~~~~e~al~~~p~~------~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~---~~~~~lw~ 467 (530)
T 2ooe_A 397 ALMEYYCSKDKSVAFKIFELGLKKYGDI------PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP---EKSGEIWA 467 (530)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHHTTC------HHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCG---GGCHHHHH
T ss_pred HHHHHHHcCChhHHHHHHHHHHHHCCCC------HHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCH---HHHHHHHH
Confidence 333 345799999999999999987532 46789999999999999999999999975432221 11222344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHH
Q 024043 198 NAGICQLCKGDVVAITNALERYQDIA 223 (273)
Q Consensus 198 ~~gl~~l~~gd~~~A~~~~~~~~~ll 223 (273)
..+......||...+..+..+.....
T Consensus 468 ~~~~~e~~~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 468 RFLAFESNIGDLASILKVEKRRFTAF 493 (530)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 44444566799999998888875544
No 179
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=98.80 E-value=2.1e-05 Score=69.44 Aligned_cols=220 Identities=10% Similarity=0.043 Sum_probs=165.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc--CHHHHHHHHHHHHHHHHhcCChhHHHH
Q 024043 36 FDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT--SSNEAISCLEQAVNMFCDIGRLSMAAR 113 (273)
Q Consensus 36 ~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~--~~~eA~~~~~~Al~~~~~~g~~~~~a~ 113 (273)
..+.|.+|...|++++-.++.......+... ...-++.....+-+.+... ..+.-++.+..+++-.........-.+
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~ 100 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTRPFLSSI-SKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGS-CHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456899999999998888887776665444 3456777778888888776 667778888888888777777776777
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH--h-ccchhhh
Q 024043 114 YYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQS--L-NNNLLKY 190 (273)
Q Consensus 114 ~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~--~-~~~~~~~ 190 (273)
.-.++|.+|...|+|.+|...+.+...-....++.....+++..-..+|..++++.++...|.++.... + .+| .
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p---~ 177 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPP---K 177 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH---H
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCH---H
Confidence 778999999999999999999999999888877767777888888899999999999999999985332 2 111 1
Q ss_pred chhhHHHHHHHHHH-hcCCHHHHHHHHHH----HH---------------------------------------------
Q 024043 191 GVKGHLLNAGICQL-CKGDVVAITNALER----YQ--------------------------------------------- 220 (273)
Q Consensus 191 ~~~~~~~~~gl~~l-~~gd~~~A~~~~~~----~~--------------------------------------------- 220 (273)
-........|+.|+ ..+|+..|...|-+ |.
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r~el~~~l~~~~~~~~~~pei~ 257 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSDDVNQLVSGKLAITYSGRDID 257 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHSHHHHTTCSHHHH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCHHHHHHHhccccccccCCccHH
Confidence 12233345588888 88888888554432 11
Q ss_pred ---HHHHHHhhcCHhHHHHHHHhhhccCCCchhHHHHHHHHH
Q 024043 221 ---DIAASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVK 259 (273)
Q Consensus 221 ---~ll~a~~~~d~~~~~~~~~~~~~~~~ld~~~~~~l~~~~ 259 (273)
.++.++..++...|...+..|......||+...-+..+.
T Consensus 258 ~l~~L~~a~~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~ 299 (394)
T 3txn_A 258 AMKSVAEASHKRSLADFQAALKEYKKELAEDVIVQAHLGTLY 299 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 356678888888899999888777777888654444433
No 180
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.77 E-value=6.4e-08 Score=81.70 Aligned_cols=139 Identities=9% Similarity=-0.071 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhH
Q 024043 32 AADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSM 110 (273)
Q Consensus 32 A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~ 110 (273)
.-++.-.-+.++...|+|++|.+.|..... +.+... .....|.++.+. ++++|+.+|+++.. ..++..
T Consensus 101 r~dl~LayA~~L~~~g~y~eA~~~l~~~~~-----~~p~~~--~~~~~a~l~~~~~r~~dA~~~l~~a~~----~~d~~~ 169 (282)
T 4f3v_A 101 PLAITMGFAACEAAQGNYADAMEALEAAPV-----AGSEHL--VAWMKAVVYGAAERWTDVIDQVKSAGK----WPDKFL 169 (282)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTSSCC-----TTCHHH--HHHHHHHHHHHTTCHHHHHHHHTTGGG----CSCHHH
T ss_pred HhHHHHHHHHHHHHCCCHHHHHHHHHHHHh-----cCCchH--HHHHHHHHHHHcCCHHHHHHHHHHhhc----cCCccc
Confidence 344444557889999999999999887765 233333 555666677666 99999999986643 224445
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhc
Q 024043 111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLN 184 (273)
Q Consensus 111 ~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~ 184 (273)
...+...+|.++..+|++++|+.+|++|+. ....+......+...|.++.++|+.++|...|+++....++
T Consensus 170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~~---g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 170 AGAAGVAHGVAAANLALFTEAERRLTEAND---SPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---STTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHhc---CCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 567899999999999999999999999983 11113336678999999999999999999999999765443
No 181
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.76 E-value=1.3e-07 Score=70.44 Aligned_cols=103 Identities=13% Similarity=0.130 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHH
Q 024043 33 ADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMA 111 (273)
Q Consensus 33 ~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~ 111 (273)
...+...|..+...|++++|+.+|.+++... .+......++..+|.+|... ++++|+.++++++.+....
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------ 98 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLD---ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD------ 98 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC---CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc---ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC------
Confidence 4455667999999999999999999998753 34445578899999999887 9999999999999875432
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 024043 112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQN 144 (273)
Q Consensus 112 a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~ 144 (273)
..++..+|.++...|++++|+.+|++++++...
T Consensus 99 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 131 (148)
T 2dba_A 99 VKALYRRSQALEKLGRLDQAVLDLQRCVSLEPK 131 (148)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 568899999999999999999999999998643
No 182
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.74 E-value=2e-08 Score=72.97 Aligned_cols=92 Identities=14% Similarity=0.092 Sum_probs=74.3
Q ss_pred HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHH
Q 024043 45 LAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYE 123 (273)
Q Consensus 45 ~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~ 123 (273)
..|++++|+.+|.+++++. .+......++.++|.+|... ++++|+.+|++++.+.+.. ..++.++|.++.
T Consensus 2 ~~g~~~~A~~~~~~al~~~---~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~ 72 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASG---LQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH------QALRVFYAMVLY 72 (117)
T ss_dssp -----CCCHHHHHHHHSSC---CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcC---CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------hHHHHHHHHHHH
Confidence 3578899999999998752 12345678899999999887 9999999999999986554 568999999999
Q ss_pred hcCCHHHHHHHHHHHHHHHhcc
Q 024043 124 SEHNIEQTIVFFEKAADMFQNE 145 (273)
Q Consensus 124 ~~g~~~~A~~~y~~Al~~~~~~ 145 (273)
..|++++|+.+++++++.....
T Consensus 73 ~~g~~~~A~~~~~~al~~~p~~ 94 (117)
T 3k9i_A 73 NLGRYEQGVELLLKIIAETSDD 94 (117)
T ss_dssp HHTCHHHHHHHHHHHHHHHCCC
T ss_pred HcCCHHHHHHHHHHHHHhCCCc
Confidence 9999999999999999987643
No 183
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.73 E-value=5.6e-08 Score=68.72 Aligned_cols=96 Identities=19% Similarity=0.110 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhch
Q 024043 113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGV 192 (273)
Q Consensus 113 ~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~ 192 (273)
.++..+|.++...|++++|+.+|++++++.... ..++..+|.++..+|++++|+.+|++++...+. ...
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~ 75 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEE------SKYWLMKGKALYNLERYEEAVDCYNYVINVIED-----EYN 75 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC-----TTC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-----cch
Confidence 467789999999999999999999999985432 467899999999999999999999999764433 012
Q ss_pred hhHHHHHHHHHHhc-CCHHHHHHHHHHH
Q 024043 193 KGHLLNAGICQLCK-GDVVAITNALERY 219 (273)
Q Consensus 193 ~~~~~~~gl~~l~~-gd~~~A~~~~~~~ 219 (273)
...+..++.++... |++.+|.+++++.
T Consensus 76 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~ 103 (112)
T 2kck_A 76 KDVWAAKADALRYIEGKEVEAEIAEARA 103 (112)
T ss_dssp HHHHHHHHHHHTTCSSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34678889999999 9999999998875
No 184
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.69 E-value=6.4e-07 Score=67.32 Aligned_cols=114 Identities=12% Similarity=0.145 Sum_probs=91.5
Q ss_pred CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHH--
Q 024043 87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAE-- 164 (273)
Q Consensus 87 ~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~-- 164 (273)
++++|+.+|++|.+ .|++... +|.+|...+.+++|+++|++|++. ++ ..++.++|.+|..
T Consensus 10 d~~~A~~~~~~aa~----~g~~~a~------lg~~y~~g~~~~~A~~~~~~Aa~~----g~----~~a~~~Lg~~y~~G~ 71 (138)
T 1klx_A 10 DLKKAIQYYVKACE----LNEMFGC------LSLVSNSQINKQKLFQYLSKACEL----NS----GNGCRFLGDFYENGK 71 (138)
T ss_dssp HHHHHHHHHHHHHH----TTCTTHH------HHHHTCTTSCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHc----CCCHhhh------HHHHHHcCCCHHHHHHHHHHHHcC----CC----HHHHHHHHHHHHcCC
Confidence 78999999999975 4554433 999999988899999999999976 22 4678999999998
Q ss_pred --hcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHHhhcCHhH
Q 024043 165 --LEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLC----KGDVVAITNALERYQDIAASMDEEDIAK 233 (273)
Q Consensus 165 --~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~----~gd~~~A~~~~~~~~~ll~a~~~~d~~~ 233 (273)
.+++++|+++|+++... + ....++++|.+|.. .+|+.+|...+++. .+.|+.+.
T Consensus 72 g~~~d~~~A~~~~~~Aa~~--g-------~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A------a~~g~~~A 131 (138)
T 1klx_A 72 YVKKDLRKAAQYYSKACGL--N-------DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKA------CRLGSEDA 131 (138)
T ss_dssp SSCCCHHHHHHHHHHHHHT--T-------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH------HHTTCHHH
T ss_pred CCCccHHHHHHHHHHHHcC--C-------CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH------HHCCCHHH
Confidence 88999999999999742 2 23467889999888 88999999988875 44555543
No 185
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.68 E-value=5.6e-08 Score=69.08 Aligned_cols=95 Identities=11% Similarity=0.010 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhh
Q 024043 111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKY 190 (273)
Q Consensus 111 ~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~ 190 (273)
.+..+..+|.++...|++++|+.+|++|+++.+.. ..++.++|.++..+|+|++|++.|++++...+++.. ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~ 75 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQN------PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEH-VA 75 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTS-HH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccH-HH
Confidence 35688999999999999999999999999985432 467899999999999999999999999865444311 11
Q ss_pred chhhHHHHHHHHHHhcCCHHHH
Q 024043 191 GVKGHLLNAGICQLCKGDVVAI 212 (273)
Q Consensus 191 ~~~~~~~~~gl~~l~~gd~~~A 212 (273)
.....++.+|.++...|++..|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~a 97 (111)
T 2l6j_A 76 IRSKLQYRLELAQGAVGSVQIP 97 (111)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHHHHHHHhHhhh
Confidence 1244566777777777655443
No 186
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.67 E-value=2.6e-07 Score=84.72 Aligned_cols=151 Identities=11% Similarity=0.006 Sum_probs=113.9
Q ss_pred cCCHH-------HHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHH
Q 024043 46 AKSWD-------KAGATYVKLAN-CHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYK 116 (273)
Q Consensus 46 ~~~~~-------~A~~~~~~a~~-~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~ 116 (273)
.|+++ +|...|++|+. +.. .....+...+.++... ++++|...|++++.+.. ...+.++.
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p------~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~ 360 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAISTLLK------KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIED-----IDPTLVYI 360 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTTCS------SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSS-----SCHHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHhCc------ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccc-----cCchHHHH
Confidence 68876 88888888876 321 2245677788888766 99999999999998522 12235899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHH-HHHhcCHHHHHHHHHHHHHHHhccchhhhchhhH
Q 024043 117 EIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQY-AAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGH 195 (273)
Q Consensus 117 ~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~-~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~ 195 (273)
+.|.++...|++++|...|++|++.... . ...+...+.+ +...|++++|..+|++++...++++ ..
T Consensus 361 ~~~~~~~~~~~~~~A~~~~~~Al~~~~~-----~-~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~-------~~ 427 (530)
T 2ooe_A 361 QYMKFARRAEGIKSGRMIFKKAREDART-----R-HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIP-------EY 427 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCTTC-----C-THHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCH-------HH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhccCC-----c-hHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCH-------HH
Confidence 9999998889999999999999976332 1 2334444444 3468999999999999987666542 35
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043 196 LLNAGICQLCKGDVVAITNALERYQ 220 (273)
Q Consensus 196 ~~~~gl~~l~~gd~~~A~~~~~~~~ 220 (273)
+...+......|+..+|+..|++..
T Consensus 428 ~~~~~~~~~~~g~~~~Ar~~~~~al 452 (530)
T 2ooe_A 428 VLAYIDYLSHLNEDNNTRVLFERVL 452 (530)
T ss_dssp HHHHHHHHTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHhhHHHHHHHHH
Confidence 6677777888999999999999874
No 187
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.67 E-value=3.2e-07 Score=62.62 Aligned_cols=86 Identities=16% Similarity=0.248 Sum_probs=66.1
Q ss_pred hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccch
Q 024043 108 LSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNL 187 (273)
Q Consensus 108 ~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~ 187 (273)
+...+.++..+|.++...|++++|+.+|++|+++.... ..++..+|.++...|++++|+.+|++++...+++.
T Consensus 5 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~- 77 (91)
T 1na3_A 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA- 77 (91)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-
T ss_pred ccccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCH-
Confidence 34556788899999999999999999999999875322 46788999999999999999999999976544432
Q ss_pred hhhchhhHHHHHHHHHHhc
Q 024043 188 LKYGVKGHLLNAGICQLCK 206 (273)
Q Consensus 188 ~~~~~~~~~~~~gl~~l~~ 206 (273)
..+.++|.++...
T Consensus 78 ------~~~~~l~~~~~~~ 90 (91)
T 1na3_A 78 ------EAKQNLGNAKQKQ 90 (91)
T ss_dssp ------HHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHhc
Confidence 3455666666544
No 188
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=98.63 E-value=5.6e-05 Score=64.86 Aligned_cols=230 Identities=10% Similarity=0.047 Sum_probs=164.3
Q ss_pred hHHHHHHHHHHhhccccCCCCCH---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 024043 7 RAEEFEKKAEKKLNGWGLFGSKY---EDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCY 83 (273)
Q Consensus 7 ~a~~l~~~Aek~~k~~~~~~~~~---~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~ 83 (273)
+-++.+.+-++++. .|+| =+|-+.|.-..+-|...++|++|++.....+..+-+.+....++..-.-+..+|
T Consensus 11 ~~~~~i~rl~~~I~-----~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy 85 (336)
T 3lpz_A 11 KIERIIARLQRRIA-----EGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTF 85 (336)
T ss_dssp HHHHHHHHHHHHHH-----HCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-----CCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHH
Confidence 44555666666555 3699 899999999999999999999999999999999989998888887777777888
Q ss_pred hcc--CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCC-cccHHHHHHHHHH
Q 024043 84 KKT--SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEV-TTSANQCKQKVAQ 160 (273)
Q Consensus 84 ~~~--~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~-~~~~~~~~~~~a~ 160 (273)
.+. .+++ +...+.++++..... ..++ =..+..+|+.+....+. +.+-......+|.
T Consensus 86 ~~~~~~~~~--~~~~rL~~L~~~~~~------------------~~p~-r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~ 144 (336)
T 3lpz_A 86 RQAGQRVDG--ASRGKLLGCLRLFQP------------------GEPV-RKRFVKEMIDWSKKFGDYPAGDPELHHVVGT 144 (336)
T ss_dssp HHHTCCCCH--HHHHHHHHHHTTSCT------------------TCHH-HHHHHHHHHHHHHHHSSCTTCCHHHHHHHHH
T ss_pred HHcCCCCCH--HHHHHHHHHHHhCCC------------------CCcH-HHHHHHHHHHHHhhcCCCCCCCHHHHHHHHH
Confidence 665 3332 344445555444332 1222 24577778887776543 4566778889999
Q ss_pred HHHHhcCHHHHHHHHHH-------H----H-HHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHHH-------
Q 024043 161 YAAELEQYHKSIEIYEE-------I----A-RQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQD------- 221 (273)
Q Consensus 161 ~~~~~g~y~~A~~~~~~-------~----~-~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~------- 221 (273)
++.+-++|.+|..+|-. . + .-..... ....--...++++.+|+.++...|..+++.|..
T Consensus 145 ~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~--~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~l~~~~p 222 (336)
T 3lpz_A 145 LYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDE--SHTAPLYCARAVLPYLLVANVRAANTAYRIFTSALVEDNK 222 (336)
T ss_dssp HHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSC--GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhcCC
Confidence 99999999999877621 1 1 1111111 112233455778899999999999998877662
Q ss_pred ----------------------------HHHHHhhcCHhHHHHHHHhhhccCCCch-hHHHHHHHHHHhccc
Q 024043 222 ----------------------------IAASMDEEDIAKFTDVVKEFDSMTPLDP-WKTTLLLRVKEKLKA 264 (273)
Q Consensus 222 ----------------------------ll~a~~~~d~~~~~~~~~~~~~~~~ld~-~~~~~l~~~~~~~~~ 264 (273)
|+.+++.++.+.|+..+..|.....-|| -..+.|.+|.+.+.+
T Consensus 223 ~L~~q~~~~~~~~~~~~p~~PLLNFl~lLllt~q~~~~~lF~~L~~~Y~~~l~rd~~~~~~~L~~IG~~YFg 294 (336)
T 3lpz_A 223 GLTVQNIGSQSAELRIFPSLPLLNFISMLLLSVQKGSPDLFRQLKSKYEANLNELNGIWDTALELIAEMYFG 294 (336)
T ss_dssp TSCCEESCC--CCCEECTTCHHHHHHHHHHHHHHSCCHHHHHHHHHHTHHHHHTTTTTTHHHHHHHHHHHHC
T ss_pred CccccccccCCcccccCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHcC
Confidence 4557788889999999999998777777 336699999986654
No 189
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.57 E-value=3.2e-08 Score=76.17 Aligned_cols=89 Identities=16% Similarity=0.082 Sum_probs=70.8
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-C----------HHHHHHHHHHHHHHHHhcCChhHHH
Q 024043 44 KLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-S----------SNEAISCLEQAVNMFCDIGRLSMAA 112 (273)
Q Consensus 44 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~----------~~eA~~~~~~Al~~~~~~g~~~~~a 112 (273)
.+.+.|++|+.+|.+++++... -+.++.+.|.++... + +++|+.+|++|+.+-... +
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~------~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~------~ 80 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPL------DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK------D 80 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC------H
T ss_pred HHHhHHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCc------H
Confidence 3456788999999998888532 346788888888766 3 569999999999987654 4
Q ss_pred HHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHHHhc
Q 024043 113 RYYKEIAELYESEH-----------NIEQTIVFFEKAADMFQN 144 (273)
Q Consensus 113 ~~l~~lg~~~~~~g-----------~~~~A~~~y~~Al~~~~~ 144 (273)
.++.++|.+|..+| ++++|+.+|++|+++-..
T Consensus 81 ~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~ 123 (158)
T 1zu2_A 81 EAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPD 123 (158)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCC
Confidence 58999999998874 899999999999999654
No 190
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.56 E-value=2.4e-07 Score=78.16 Aligned_cols=194 Identities=13% Similarity=0.045 Sum_probs=129.6
Q ss_pred CCCHHHHHHHHHHHH---------------------HHHHHcCCHHHHHHHHHHHHHHHHH--------cCCH-------
Q 024043 26 GSKYEDAADLFDKAA---------------------NSFKLAKSWDKAGATYVKLANCHLK--------LESK------- 69 (273)
Q Consensus 26 ~~~~~~A~~~~~~a~---------------------~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~------- 69 (273)
.+|+..|.++|.++. .++...+++.+++..+.+++.+... .|-+
T Consensus 19 ~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v 98 (282)
T 4f3v_A 19 PMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPV 98 (282)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEEC
T ss_pred CCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccccc
Confidence 578889999888863 2333444455555555555553221 1100
Q ss_pred HHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCc
Q 024043 70 HEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVT 148 (273)
Q Consensus 70 ~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~ 148 (273)
...-......+.++... +|++|.+.|...+. +.+... ....+|.++...+++++|+.++++++..- ++
T Consensus 99 ~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~-----~~p~~~--~~~~~a~l~~~~~r~~dA~~~l~~a~~~~----d~ 167 (282)
T 4f3v_A 99 TSPLAITMGFAACEAAQGNYADAMEALEAAPV-----AGSEHL--VAWMKAVVYGAAERWTDVIDQVKSAGKWP----DK 167 (282)
T ss_dssp SSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC-----TTCHHH--HHHHHHHHHHHTTCHHHHHHHHTTGGGCS----CH
T ss_pred CCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh-----cCCchH--HHHHHHHHHHHcCCHHHHHHHHHHhhccC----Cc
Confidence 00112223335555444 89999998887654 344444 77888999999999999999998654321 22
Q ss_pred ccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhh
Q 024043 149 TSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDIAASMDE 228 (273)
Q Consensus 149 ~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~ll~a~~~ 228 (273)
.....++..+|.++..+|++++|+..|++++... .++ .......++.|+|+..+|+.++|+..|++... ..
T Consensus 168 ~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~-~~P---~~~~da~~~~glaL~~lGr~deA~~~l~~a~a-----~~ 238 (282)
T 4f3v_A 168 FLAGAAGVAHGVAAANLALFTEAERRLTEANDSP-AGE---ACARAIAWYLAMARRSQGNESAAVALLEWLQT-----TH 238 (282)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTST-TTT---TTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-----HS
T ss_pred ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC-CCc---cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cC
Confidence 2335689999999999999999999999996211 001 11345678899999999999999999998522 23
Q ss_pred cCHhHHHHHHHh
Q 024043 229 EDIAKFTDVVKE 240 (273)
Q Consensus 229 ~d~~~~~~~~~~ 240 (273)
.+ .....++..
T Consensus 239 P~-~~~~~aL~~ 249 (282)
T 4f3v_A 239 PE-PKVAAALKD 249 (282)
T ss_dssp CC-HHHHHHHHC
T ss_pred Cc-HHHHHHHhC
Confidence 44 777777765
No 191
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.50 E-value=1.4e-07 Score=72.57 Aligned_cols=87 Identities=8% Similarity=0.036 Sum_probs=72.6
Q ss_pred CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHHHhccCCcccHHHHHH
Q 024043 87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNI----------EQTIVFFEKAADMFQNEEVTTSANQCKQ 156 (273)
Q Consensus 87 ~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~----------~~A~~~y~~Al~~~~~~~~~~~~~~~~~ 156 (273)
.+++|+.++++++++.... +.++.++|.++..++++ ++|+..|++|+++... ...++.
T Consensus 17 ~feeA~~~~~~Ai~l~P~~------aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~------~~~A~~ 84 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSNPLD------ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK------KDEAVW 84 (158)
T ss_dssp HHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT------CHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC------cHHHHH
Confidence 6889999999999887654 45899999999988764 5999999999998643 247899
Q ss_pred HHHHHHHHhc-----------CHHHHHHHHHHHHHHHhcc
Q 024043 157 KVAQYAAELE-----------QYHKSIEIYEEIARQSLNN 185 (273)
Q Consensus 157 ~~a~~~~~~g-----------~y~~A~~~~~~~~~~~~~~ 185 (273)
++|.+|..+| ++++|+++|++++...+++
T Consensus 85 ~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~ 124 (158)
T 1zu2_A 85 CIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN 124 (158)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence 9999999875 8999999999999877665
No 192
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.50 E-value=2.8e-07 Score=66.36 Aligned_cols=82 Identities=9% Similarity=0.009 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHH
Q 024043 90 EAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYH 169 (273)
Q Consensus 90 eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~ 169 (273)
+|+++|++++...... +.++.++|.++...|++++|+.+|++|+.+.... ..++..+|.++..+|+++
T Consensus 3 ~a~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~ 70 (115)
T 2kat_A 3 AITERLEAMLAQGTDN------MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY------SVAWKWLGKTLQGQGDRA 70 (115)
T ss_dssp CHHHHHHHHHTTTCCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHhCCCc------HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHHcCCHH
Confidence 5778888887754322 4689999999999999999999999999885422 457899999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 024043 170 KSIEIYEEIARQSL 183 (273)
Q Consensus 170 ~A~~~~~~~~~~~~ 183 (273)
+|+..|++++...+
T Consensus 71 ~A~~~~~~al~~~~ 84 (115)
T 2kat_A 71 GARQAWESGLAAAQ 84 (115)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999975544
No 193
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.49 E-value=5.4e-07 Score=61.45 Aligned_cols=85 Identities=19% Similarity=0.337 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCc
Q 024043 70 HEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVT 148 (273)
Q Consensus 70 ~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~ 148 (273)
...+..+..+|.++... ++++|+.+|++++.+.... ..++.++|.++...|++++|+.+|++++++....
T Consensus 6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~--- 76 (91)
T 1na3_A 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN--- 76 (91)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC---
Confidence 34567788889988777 9999999999999875332 4688999999999999999999999999885422
Q ss_pred ccHHHHHHHHHHHHHHhc
Q 024043 149 TSANQCKQKVAQYAAELE 166 (273)
Q Consensus 149 ~~~~~~~~~~a~~~~~~g 166 (273)
..++..+|.++..+|
T Consensus 77 ---~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 77 ---AEAKQNLGNAKQKQG 91 (91)
T ss_dssp ---HHHHHHHHHHHHHHC
T ss_pred ---HHHHHHHHHHHHhcC
Confidence 356788888887654
No 194
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.46 E-value=1.1e-06 Score=61.95 Aligned_cols=65 Identities=18% Similarity=0.227 Sum_probs=32.6
Q ss_pred HHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 024043 75 AYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE 145 (273)
Q Consensus 75 ~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~ 145 (273)
++..+|.+|... ++++|+.+|++++.+..... .++..+|.+|...|++++|+.+|++|+++.+..
T Consensus 9 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~------~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 9 TRYALAQEHLKHDNASRALALFEELVETDPDYV------GTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence 344455555444 55555555555555433222 245555555555555555555555555554443
No 195
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=98.39 E-value=0.00026 Score=60.31 Aligned_cols=229 Identities=9% Similarity=0.047 Sum_probs=159.2
Q ss_pred hHHHHHHHHHHhhccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc
Q 024043 7 RAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT 86 (273)
Q Consensus 7 ~a~~l~~~Aek~~k~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~ 86 (273)
.-++.+++-+.++. .|+|=+|-+.|.-..+-|...++|++|++.....+..+-+.|....++..-.-+..+|.+.
T Consensus 12 ~~~r~l~rl~~~I~-----~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~ 86 (312)
T 2wpv_A 12 KLAKTLQRFENKIK-----AGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLA 86 (312)
T ss_dssp CHHHHHHHHHHHHH-----HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhh-----ccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHc
Confidence 34455555555554 3699999999999999999999999999999999999888888877777777777777665
Q ss_pred --CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCC-cccHHHHHHHHHHHHH
Q 024043 87 --SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEV-TTSANQCKQKVAQYAA 163 (273)
Q Consensus 87 --~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~-~~~~~~~~~~~a~~~~ 163 (273)
.++ .+...+.++++..... ..+ .=..+..+|+.+....+. +.+....+..+|..+.
T Consensus 87 ~~~~~--~~~~~rl~~l~~~~p~------------------~~~-~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~ 145 (312)
T 2wpv_A 87 EVKVD--DISVARLVRLIAELDP------------------SEP-NLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLL 145 (312)
T ss_dssp TCCCS--HHHHHHHHHHHTTCCT------------------TCT-THHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHH
T ss_pred CCCCC--HHHHHHHHHHHHHCCC------------------CCc-hHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHh
Confidence 222 2233344444433221 111 125677788888877654 5666788899999999
Q ss_pred HhcCHHHHHHHHHHH--------H----HHHhccc-hhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH----------
Q 024043 164 ELEQYHKSIEIYEEI--------A----RQSLNNN-LLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ---------- 220 (273)
Q Consensus 164 ~~g~y~~A~~~~~~~--------~----~~~~~~~-~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~---------- 220 (273)
+-|++.+|..+|-.. + .-....+ ..+....-...++++.+|+.|+...|...++.|.
T Consensus 146 ~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~~~~~~~~~~ 225 (312)
T 2wpv_A 146 EGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRLVFNYLFISNISFAHESKDIFLERFIEKFHPK 225 (312)
T ss_dssp HTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHHHCCC
T ss_pred hcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcccc
Confidence 999999999877311 1 1111100 0011122334577888999999999999888764
Q ss_pred ------------------------HHHHHHhhcCHhHHHHHHHhhhccCCCchhHHHHHHHHHHhccc
Q 024043 221 ------------------------DIAASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKLKA 264 (273)
Q Consensus 221 ------------------------~ll~a~~~~d~~~~~~~~~~~~~~~~ld~~~~~~l~~~~~~~~~ 264 (273)
=|+.+++.++.+-|+..+..|..... .| .+.|.+|.+..-+
T Consensus 226 ~~~~~~~~~~~~~~p~~pllnF~~lLl~t~e~~~~~lF~~L~~~Y~~~L~--~~-~~~L~~Ig~~yFg 290 (312)
T 2wpv_A 226 YEKIDKNGYEIVFFEDYSDLNFLQLLLITCQTKDKSYFLNLKNHYLDFSQ--AY-KSELEFLGQEYFN 290 (312)
T ss_dssp EEEEEETTEEEEEESSCHHHHHHHHHHHHHHHTCHHHHHHHHHHCHHHHH--HT-HHHHHHHHHHHHC
T ss_pred cccccccccCCCCCCCCccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--HH-HHHHHHHHHHhcC
Confidence 14557888889999999999987755 55 5689999887543
No 196
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.39 E-value=2.3e-06 Score=60.23 Aligned_cols=66 Identities=11% Similarity=0.106 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Q 024043 112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSL 183 (273)
Q Consensus 112 a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~ 183 (273)
+.++..+|.++...|++++|+.+|++|+++.... ..++..+|.++..+|++++|++.|++++....
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDY------VGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 4678999999999999999999999999986543 25789999999999999999999999975543
No 197
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.34 E-value=1e-06 Score=63.42 Aligned_cols=85 Identities=8% Similarity=0.028 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHH
Q 024043 51 KAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIE 129 (273)
Q Consensus 51 ~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~ 129 (273)
+|+..|.+++.... . ....+..+|.+|... ++++|+.+|++++.+.... +.++..+|.++...|+++
T Consensus 3 ~a~~~~~~al~~~p--~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~ 70 (115)
T 2kat_A 3 AITERLEAMLAQGT--D----NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY------SVAWKWLGKTLQGQGDRA 70 (115)
T ss_dssp CHHHHHHHHHTTTC--C----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHhCC--C----cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHHcCCHH
Confidence 46667777765432 1 246788999999877 9999999999999875433 458899999999999999
Q ss_pred HHHHHHHHHHHHHhccCC
Q 024043 130 QTIVFFEKAADMFQNEEV 147 (273)
Q Consensus 130 ~A~~~y~~Al~~~~~~~~ 147 (273)
+|+.+|++++++....++
T Consensus 71 ~A~~~~~~al~~~~~~~~ 88 (115)
T 2kat_A 71 GARQAWESGLAAAQSRGD 88 (115)
T ss_dssp HHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcccccc
Confidence 999999999999887654
No 198
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.29 E-value=3.2e-05 Score=66.11 Aligned_cols=203 Identities=9% Similarity=-0.030 Sum_probs=135.6
Q ss_pred HHHHHHcC--CHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHHHHHhcCChhHHHHHH
Q 024043 40 ANSFKLAK--SWDKAGATYVKLANCHLKLES-KHEAAQAYVDAAHCYKK-TSSNEAISCLEQAVNMFCDIGRLSMAARYY 115 (273)
Q Consensus 40 ~~~~~~~~--~~~~A~~~~~~a~~~~~~~~~-~~~aa~~~~~~~~~~~~-~~~~eA~~~~~~Al~~~~~~g~~~~~a~~l 115 (273)
+.++...+ ++++++.++.+++....+.-. +.....++..+...... .++++++.++.++++...++- .++
T Consensus 74 ~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny------~aW 147 (306)
T 3dra_A 74 FNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNH------HVW 147 (306)
T ss_dssp HHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCH------HHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCH------HHH
Confidence 45666777 999999999999987544321 11222222211111111 378999999999998776653 489
Q ss_pred HHHHHHHHhcCCHH--HHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcC------HHHHHHHHHHHHHHHhccch
Q 024043 116 KEIAELYESEHNIE--QTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQ------YHKSIEIYEEIARQSLNNNL 187 (273)
Q Consensus 116 ~~lg~~~~~~g~~~--~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~------y~~A~~~~~~~~~~~~~~~~ 187 (273)
..-+.++...|.++ ++++++.++++..... ..++...+.+...+|+ ++++++++.+++...+++..
T Consensus 148 ~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N------~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~S 221 (306)
T 3dra_A 148 SYRKWLVDTFDLHNDAKELSFVDKVIDTDLKN------NSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPS 221 (306)
T ss_dssp HHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHH
T ss_pred HHHHHHHHHhcccChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCcc
Confidence 99999999999988 9999999999875432 3678888899888887 99999999999987777631
Q ss_pred hhhchhhHHHHHHHHHHhcCC-HHHHHHHHHHHH--------------HHHHHHhhcCHhHHHHHHHhhhccCC-CchhH
Q 024043 188 LKYGVKGHLLNAGICQLCKGD-VVAITNALERYQ--------------DIAASMDEEDIAKFTDVVKEFDSMTP-LDPWK 251 (273)
Q Consensus 188 ~~~~~~~~~~~~gl~~l~~gd-~~~A~~~~~~~~--------------~ll~a~~~~d~~~~~~~~~~~~~~~~-ld~~~ 251 (273)
.++..+-+....|. .......++++. -+.+.+.. .+.+.+++..|+.+.. +||..
T Consensus 222 -------aW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~--~~~~~~A~~~~~~l~~~~Dpir 292 (306)
T 3dra_A 222 -------TWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQ--QKKYNESRTVYDLLKSKYNPIR 292 (306)
T ss_dssp -------HHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTTCGGG
T ss_pred -------HHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHc--cCCHHHHHHHHHHHHhccChHH
Confidence 23333333333333 222333333211 11222221 2356788999999885 99999
Q ss_pred HHHHHHHHHhcc
Q 024043 252 TTLLLRVKEKLK 263 (273)
Q Consensus 252 ~~~l~~~~~~~~ 263 (273)
...+.-.++.|.
T Consensus 293 ~~yW~~~~~~l~ 304 (306)
T 3dra_A 293 SNFWDYQISKLT 304 (306)
T ss_dssp HHHHHHHHHTCC
T ss_pred HHHHHHHHhhcc
Confidence 998887777653
No 199
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.27 E-value=4.8e-05 Score=64.91 Aligned_cols=190 Identities=14% Similarity=0.110 Sum_probs=120.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHH
Q 024043 37 DKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYY 115 (273)
Q Consensus 37 ~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l 115 (273)
.-+|.++...|++++|+..+.+.+.. +...+...++..++.++... +++.|.+.+++........ .+..-..+
T Consensus 104 ~~la~i~~~~g~~eeAL~~l~~~i~~----~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~--~~~~d~~l 177 (310)
T 3mv2_B 104 YLLATAQAILGDLDKSLETCVEGIDN----DEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDT--VSGDNEMI 177 (310)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTS----SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHH--HHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcc----CCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc--cccchHHH
Confidence 36789999999999999999887432 11124456777788888777 9999999999876543200 01112244
Q ss_pred HHHHHHH--HhcC--CHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhc--cc-hh
Q 024043 116 KEIAELY--ESEH--NIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLN--NN-LL 188 (273)
Q Consensus 116 ~~lg~~~--~~~g--~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~--~~-~~ 188 (273)
..+++.+ ...| ++.+|...|++..+-+.. ......+.+ ++..+|++++|.+.++.+....++ +. ..
T Consensus 178 ~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~----~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~ 250 (310)
T 3mv2_B 178 LNLAESYIKFATNKETATSNFYYYEELSQTFPT----WKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENA 250 (310)
T ss_dssp HHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCS----HHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHH
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCC----cccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccC
Confidence 5555443 3234 899999999997665532 111233333 899999999999999976543321 00 00
Q ss_pred hhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH------HHHHHHhhcCHhHHHHHHHhhh
Q 024043 189 KYGVKGHLLNAGICQLCKGDVVAITNALERYQ------DIAASMDEEDIAKFTDVVKEFD 242 (273)
Q Consensus 189 ~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~------~ll~a~~~~d~~~~~~~~~~~~ 242 (273)
.......+.+++.+....|+ .|.+.+++.. .++..+... ...|.+++.+|.
T Consensus 251 ~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~~~k-~~~Fd~~~~ky~ 307 (310)
T 3mv2_B 251 VLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHHQEI-DAKFDELVRKYD 307 (310)
T ss_dssp HSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHHHHH-HHHHHHHHHTCC
T ss_pred CCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHHHHH-HHHHHHHHHHhc
Confidence 01234566677777777887 6777777755 233333222 456777777774
No 200
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.24 E-value=1.2e-05 Score=57.19 Aligned_cols=73 Identities=11% Similarity=0.126 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCC-cccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043 113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEV-TTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN 185 (273)
Q Consensus 113 ~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~-~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~ 185 (273)
.-...+|..+...|+|.+|+.+|++|+........ ......++..+|.++.++|++++|+.++++++...+++
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~ 79 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH 79 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence 34568899999999999999999999999876532 24556899999999999999999999999998766655
No 201
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.10 E-value=0.00024 Score=61.27 Aligned_cols=188 Identities=8% Similarity=0.031 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc---CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhc
Q 024043 49 WDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT---SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE 125 (273)
Q Consensus 49 ~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~---~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~ 125 (273)
+++++.++..++....+ + ..++..-+.+.... ++++++.++.+++++..++- .+|..-+.++...
T Consensus 90 l~~EL~~~~~~L~~~PK--n----y~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy------~AW~~R~~vl~~l 157 (331)
T 3dss_A 90 VKAELGFLESCLRVNPK--S----YGTWHHRCWLLSRLPEPNWARELELCARFLEADERNF------HCWDYRRFVAAQA 157 (331)
T ss_dssp HHHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHh
Confidence 56777777777765432 2 13344445555444 48999999999999876654 4888889999998
Q ss_pred CC-HHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHh--------------cCHHHHHHHHHHHHHHHhccchhhh
Q 024043 126 HN-IEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAEL--------------EQYHKSIEIYEEIARQSLNNNLLKY 190 (273)
Q Consensus 126 g~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~--------------g~y~~A~~~~~~~~~~~~~~~~~~~ 190 (273)
|. ++++++++.++++..... ..++...+.++..+ +.++++++++.+++...+++..
T Consensus 158 ~~~~~eel~~~~~~I~~~p~N------~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~S--- 228 (331)
T 3dss_A 158 AVAPAEELAFTDSLITRNFSN------YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQS--- 228 (331)
T ss_dssp TCCHHHHHHHHHHHHHHCSCC------HHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHH---
T ss_pred CcCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHH---
Confidence 88 699999999999875433 35688888887776 5699999999999988887732
Q ss_pred chhhHHHHHHHHHHhcC----------CHHHHHHHHHHHH--------------HHHHHHhhcCHhHHHHHHHhhhccCC
Q 024043 191 GVKGHLLNAGICQLCKG----------DVVAITNALERYQ--------------DIAASMDEEDIAKFTDVVKEFDSMTP 246 (273)
Q Consensus 191 ~~~~~~~~~gl~~l~~g----------d~~~A~~~~~~~~--------------~ll~a~~~~d~~~~~~~~~~~~~~~~ 246 (273)
..++.-|++....| -+.++.+++++.. -+...++. ...-.+...-+++++.
T Consensus 229 ---aW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~--~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 229 ---AWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDP--LLYEKETLQYFSTLKA 303 (331)
T ss_dssp ---HHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCT--TTTHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcc--cccHHHHHHHHHHHHH
Confidence 12233444444433 1334444444432 11112211 1223355566777788
Q ss_pred CchhHHHHHHHHHHhc
Q 024043 247 LDPWKTTLLLRVKEKL 262 (273)
Q Consensus 247 ld~~~~~~l~~~~~~~ 262 (273)
|||...--...+...+
T Consensus 304 ~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 304 VDPMRAAYLDDLRSKF 319 (331)
T ss_dssp HCGGGHHHHHHHHHHH
T ss_pred hCcchhhHHHHHHHHH
Confidence 8888776666655443
No 202
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.06 E-value=0.0021 Score=57.66 Aligned_cols=107 Identities=12% Similarity=0.109 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhh
Q 024043 111 AARYYKEIAELYESEHNIEQTIVFFEKAA-DMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLK 189 (273)
Q Consensus 111 ~a~~l~~lg~~~~~~g~~~~A~~~y~~Al-~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~ 189 (273)
.++....++.+|+..|++.+|......-. +.+. ..+...-..++.....++...++|.+|...+.++.......+...
T Consensus 136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~-~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~ 214 (445)
T 4b4t_P 136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYG-SMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYE 214 (445)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCS-SSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcH
Confidence 57788999999999999999999998754 3333 223344467788888899999999999999999853332221111
Q ss_pred hchhhHHHHHHHHHHhcCCHHHHHHHHHH
Q 024043 190 YGVKGHLLNAGICQLCKGDVVAITNALER 218 (273)
Q Consensus 190 ~~~~~~~~~~gl~~l~~gd~~~A~~~~~~ 218 (273)
.-...++...|..+...+|+..|.++|-+
T Consensus 215 ~lk~~~~~~~~~~~~~e~~y~~a~~~y~e 243 (445)
T 4b4t_P 215 SLKLEYYNLLVKISLHKREYLEVAQYLQE 243 (445)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 11223445567788888888777655443
No 203
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.01 E-value=7.2e-05 Score=65.17 Aligned_cols=146 Identities=10% Similarity=0.024 Sum_probs=100.4
Q ss_pred CCHHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-----CHHHHHHHHHHHH
Q 024043 27 SKYEDAADLFDKAANSFKL--AKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-----SSNEAISCLEQAV 99 (273)
Q Consensus 27 ~~~~~A~~~~~~a~~~~~~--~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-----~~~eA~~~~~~Al 99 (273)
|.-.+|.++|-++-..+.. ...+.+|+.+|++|+++-... +.++..++.+|... .....+.-..+++
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~------a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~ 264 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEF------TYARAEKALVDIVRHSQHPLDEKQLAALNTEI 264 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHhccCCCchhhHHHHHHHH
Confidence 4556899999987554443 334689999999999885332 22333344444211 1123334444555
Q ss_pred HHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 024043 100 NMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIA 179 (273)
Q Consensus 100 ~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~ 179 (273)
............+.++.-++..+...|++++|+..+++|+++- + + ...+..+|.++.-.|++++|++.|++++
T Consensus 265 ~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln-----~-s-~~a~~llG~~~~~~G~~~eA~e~~~~Al 337 (372)
T 3ly7_A 265 DNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE-----M-S-WLNYVLLGKVYEMKGMNREAADAYLTAF 337 (372)
T ss_dssp HHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----C-C-HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-----C-C-HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4333444445567788888888877799999999999999994 1 2 3567889999999999999999999998
Q ss_pred HHHhcc
Q 024043 180 RQSLNN 185 (273)
Q Consensus 180 ~~~~~~ 185 (273)
...+..
T Consensus 338 rL~P~~ 343 (372)
T 3ly7_A 338 NLRPGA 343 (372)
T ss_dssp HHSCSH
T ss_pred hcCCCc
Confidence 765554
No 204
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.95 E-value=1.1e-05 Score=55.94 Aligned_cols=87 Identities=9% Similarity=0.123 Sum_probs=55.8
Q ss_pred HHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHH
Q 024043 78 DAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAAR-YYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCK 155 (273)
Q Consensus 78 ~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~-~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~ 155 (273)
+.|.++... ++++|+.+|++++...... .. ++..+|.++...|++++|+.+|++|+++..... .++
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~ 72 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVG------KDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSP------ALQ 72 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSST------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST------HHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH------HHH
Confidence 345555444 7888888888877763221 23 777888888888888888888888887754332 111
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHhc
Q 024043 156 QKVAQYAAELEQYHKSIEIYEEIARQSLN 184 (273)
Q Consensus 156 ~~~a~~~~~~g~y~~A~~~~~~~~~~~~~ 184 (273)
.+ +.+.+++..|++++...++
T Consensus 73 ~~--------~~~~~a~~~~~~~~~~~p~ 93 (99)
T 2kc7_A 73 AR--------KMVMDILNFYNKDMYNQLE 93 (99)
T ss_dssp HH--------HHHHHHHHHHCCTTHHHHC
T ss_pred HH--------HHHHHHHHHHHHHhccCcc
Confidence 11 5667777777776554444
No 205
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.92 E-value=0.00063 Score=52.14 Aligned_cols=102 Identities=11% Similarity=-0.003 Sum_probs=78.9
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCC------
Q 024043 77 VDAAHCYKKTSSNEAISCLEQAVNMFCDIGR---LSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEV------ 147 (273)
Q Consensus 77 ~~~~~~~~~~~~~eA~~~~~~Al~~~~~~g~---~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~------ 147 (273)
.++-.++....|+.|+-....++.+.....+ +...+.++..+|..+...++|.+|...|++|+.+.+....
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~ 104 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRP 104 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 3444444555888888888888887765444 6788889999999999999999999999999888774321
Q ss_pred -------------cccHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 024043 148 -------------TTSANQCKQKVAQYAAELEQYHKSIEIYEEI 178 (273)
Q Consensus 148 -------------~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~ 178 (273)
.....++..+++.|+.+++++.+|+..++.+
T Consensus 105 ~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 105 STGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp ------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred cccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 1223478899999999999999999998765
No 206
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.87 E-value=5.6e-05 Score=52.26 Aligned_cols=64 Identities=9% Similarity=0.105 Sum_probs=54.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043 116 KEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQ-CKQKVAQYAAELEQYHKSIEIYEEIARQSLNN 185 (273)
Q Consensus 116 ~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~-~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~ 185 (273)
.+.|.++...|++++|+.+|++++++.... .. ++..+|.++..+|++++|++.|++++...+++
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 68 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVG------KDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS 68 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSST------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 456888888899999999999999985422 35 89999999999999999999999998765554
No 207
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.86 E-value=0.00017 Score=66.85 Aligned_cols=139 Identities=6% Similarity=-0.023 Sum_probs=105.8
Q ss_pred HHHHHHHHHH--------------HHHHHHcCC----------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 024043 30 EDAADLFDKA--------------ANSFKLAKS----------WDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKK 85 (273)
Q Consensus 30 ~~A~~~~~~a--------------~~~~~~~~~----------~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~ 85 (273)
++|.+++.++ +.++...++ +++++.++.+++....+ + ..++..-+.+...
T Consensus 46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK--~----y~aW~hR~w~l~~ 119 (567)
T 1dce_A 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK--S----YGTWHHRCWLLSR 119 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHH
Confidence 4566666665 345556666 99999999999876533 2 2345555666655
Q ss_pred c---CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHH
Q 024043 86 T---SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEH-NIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQY 161 (273)
Q Consensus 86 ~---~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g-~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~ 161 (273)
. +++++++++.+++++..++ ..+|...+.++...| .++++++++.++++..... ..+|...+.+
T Consensus 120 l~~~~~~~el~~~~k~l~~d~~N------~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n------~saW~~r~~l 187 (567)
T 1dce_A 120 LPEPNWARELELCARFLEADERN------FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN------YSSWHYRSCL 187 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCC------HHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHhhcccc------ccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCC------ccHHHHHHHH
Confidence 5 5699999999999987655 358999999999998 8999999999998875332 3568888888
Q ss_pred HHHh--------------cCHHHHHHHHHHHHHHHhccc
Q 024043 162 AAEL--------------EQYHKSIEIYEEIARQSLNNN 186 (273)
Q Consensus 162 ~~~~--------------g~y~~A~~~~~~~~~~~~~~~ 186 (273)
+..+ +.+++|++++.+++...+++.
T Consensus 188 l~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~ 226 (567)
T 1dce_A 188 LPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQ 226 (567)
T ss_dssp HHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCS
T ss_pred HHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCc
Confidence 8775 678999999999998777663
No 208
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.82 E-value=0.00012 Score=51.81 Aligned_cols=71 Identities=6% Similarity=0.016 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 024043 74 QAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGR-LSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQN 144 (273)
Q Consensus 74 ~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~-~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~ 144 (273)
..+..+|..+... +|..|+..|++|+........ ....+.++..+|.++..+|+++.|+.++++|+.+-+.
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~ 78 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE 78 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence 3455788888666 999999999999998865432 2345688999999999999999999999999988543
No 209
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.72 E-value=0.00012 Score=66.26 Aligned_cols=161 Identities=14% Similarity=0.154 Sum_probs=114.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc-CCcccHHHHHHHHHHHHHHhcCHHHHHH
Q 024043 95 LEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE-EVTTSANQCKQKVAQYAAELEQYHKSIE 173 (273)
Q Consensus 95 ~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~-~~~~~~~~~~~~~a~~~~~~g~y~~A~~ 173 (273)
+..++....-..|..+.|..++-+=..|...+.|++|..+..++. |... .+.......+.-+|.++.-.++|.+|.+
T Consensus 214 Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~ 291 (523)
T 4b4t_S 214 MMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANE 291 (523)
T ss_dssp HHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 334444444456788999999999999999999999999999885 5443 2333446677889999999999999999
Q ss_pred HHHHHHHHHhccchhhhchh-hHHHHHHHHHHhcCCHHHH--------HHHHHHHHHHHHHHhhcCHhHHHHHHHhhhcc
Q 024043 174 IYEEIARQSLNNNLLKYGVK-GHLLNAGICQLCKGDVVAI--------TNALERYQDIAASMDEEDIAKFTDVVKEFDSM 244 (273)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~-~~~~~~gl~~l~~gd~~~A--------~~~~~~~~~ll~a~~~~d~~~~~~~~~~~~~~ 244 (273)
++..+...++.+.. ..+.. .++-.+..|.+..|++..- ++.+..|..|..++..||++.|...+..+...
T Consensus 292 ~L~~A~rkap~~~~-a~gfr~~a~K~lI~V~LLlG~iP~r~lf~q~~l~~~L~pY~~Lv~Avr~GdL~~F~~~L~~h~~~ 370 (523)
T 4b4t_S 292 YIIAAIRKAPHNSK-SLGFLQQSNKLHCCIQLLMGDIPELSFFHQSNMQKSLLPYYHLTKAVKLGDLKKFTSTITKYKQL 370 (523)
T ss_dssp HHHHHTSSCSCSSS-CSHHHHHHHHHHHHHHHHHTCCCCHHHHTTTSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHH
T ss_pred HHHHHHHhCCcchh-hhhHHHHHHHHHHhHHhhcCCCCChHHhhchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhcce
Confidence 99999765554321 11222 2333456677777875431 34567788999999999999999999998765
Q ss_pred CCCchhHHHHHHHHH
Q 024043 245 TPLDPWKTTLLLRVK 259 (273)
Q Consensus 245 ~~ld~~~~~~l~~~~ 259 (273)
-.=|.... ++.+++
T Consensus 371 F~~Dgty~-LI~rLr 384 (523)
T 4b4t_S 371 LLKDDTYQ-LCVRLR 384 (523)
T ss_dssp HHHTTCTH-HHHHHH
T ss_pred eccCChhH-HHHHHH
Confidence 55454433 444433
No 210
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.71 E-value=0.00061 Score=59.10 Aligned_cols=140 Identities=9% Similarity=0.024 Sum_probs=106.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc--CHHHHHHHHHHHHHHH
Q 024043 25 FGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT--SSNEAISCLEQAVNMF 102 (273)
Q Consensus 25 ~~~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~--~~~eA~~~~~~Al~~~ 102 (273)
++++|..+...+.. +....+..++|++++.+++.+..+. ..+...-+.+.... ++++++.++.+++...
T Consensus 49 y~~~y~~~~~~~r~---~~~~~e~se~AL~lt~~~L~~nP~~------ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n 119 (349)
T 3q7a_A 49 YSEEYKDAMDYFRA---IAAKEEKSERALELTEIIVRMNPAH------YTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN 119 (349)
T ss_dssp CCHHHHHHHHHHHH---HHHTTCCSHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT
T ss_pred eCHHHHHHHHHHHH---HHHhCCCCHHHHHHHHHHHHhCchh------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC
Confidence 46788877776643 3455566789999999998775322 23455556666555 6999999999999876
Q ss_pred HhcCChhHHHHHHHHHHHHHHhc-C-CHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHH--------HHH
Q 024043 103 CDIGRLSMAARYYKEIAELYESE-H-NIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYH--------KSI 172 (273)
Q Consensus 103 ~~~g~~~~~a~~l~~lg~~~~~~-g-~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~--------~A~ 172 (273)
.+.- .++..-+.++... + +++++++++.++++..... ..++...+.+...+|.++ +++
T Consensus 120 PKny------~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkN------y~AW~~R~wvl~~l~~~~~~~~~~~~eEL 187 (349)
T 3q7a_A 120 LKSY------QVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKN------YHTWAYLHWLYSHFSTLGRISEAQWGSEL 187 (349)
T ss_dssp CCCH------HHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTC------HHHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred CCcH------HHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhccccccchhhHHHHH
Confidence 6553 4888889999887 7 8999999999999764322 467888899998888887 999
Q ss_pred HHHHHHHHHHhcc
Q 024043 173 EIYEEIARQSLNN 185 (273)
Q Consensus 173 ~~~~~~~~~~~~~ 185 (273)
+++++.+...+.+
T Consensus 188 e~~~k~I~~dp~N 200 (349)
T 3q7a_A 188 DWCNEMLRVDGRN 200 (349)
T ss_dssp HHHHHHHHHCTTC
T ss_pred HHHHHHHHhCCCC
Confidence 9999998766655
No 211
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.69 E-value=0.0015 Score=55.62 Aligned_cols=129 Identities=11% Similarity=0.121 Sum_probs=88.9
Q ss_pred HHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHH
Q 024043 76 YVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQC 154 (273)
Q Consensus 76 ~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~ 154 (273)
+.-+|.++... ++++|++.+.+.+. .|.......+...++.++...|+++.|...+++..+..+..- ...-.+
T Consensus 103 ~~~la~i~~~~g~~eeAL~~l~~~i~----~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~--~~~d~~ 176 (310)
T 3mv2_B 103 LYLLATAQAILGDLDKSLETCVEGID----NDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTV--SGDNEM 176 (310)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHT----SSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHH--HHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhc----cCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccc--ccchHH
Confidence 35788888666 99999999998743 222234566788889999999999999999998776643100 011233
Q ss_pred HHHHHH--HHHHhc--CHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHH
Q 024043 155 KQKVAQ--YAAELE--QYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALER 218 (273)
Q Consensus 155 ~~~~a~--~~~~~g--~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~ 218 (273)
+..++. +....| ++.+|..+|++.....+. +.....+++ +++.+|+++.|...++.
T Consensus 177 l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~-----~~~~~lLln---~~~~~g~~~eAe~~L~~ 236 (310)
T 3mv2_B 177 ILNLAESYIKFATNKETATSNFYYYEELSQTFPT-----WKTQLGLLN---LHLQQRNIAEAQGIVEL 236 (310)
T ss_dssp HHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCS-----HHHHHHHHH---HHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCC-----cccHHHHHH---HHHHcCCHHHHHHHHHH
Confidence 455543 455556 999999999997543221 111223333 89999999999999875
No 212
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.64 E-value=0.0005 Score=63.72 Aligned_cols=123 Identities=8% Similarity=0.052 Sum_probs=95.4
Q ss_pred HcCC-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-C----------HHHHHHHHHHHHHHHHhcCChhHHH
Q 024043 45 LAKS-WDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-S----------SNEAISCLEQAVNMFCDIGRLSMAA 112 (273)
Q Consensus 45 ~~~~-~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~----------~~eA~~~~~~Al~~~~~~g~~~~~a 112 (273)
..|. .++|++++.+++.+..+. ..++..-+.+.... + ++++++++.+++....+. .
T Consensus 40 ~~~~~~eeal~~~~~~l~~nP~~------~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~------y 107 (567)
T 1dce_A 40 QAGELDESVLELTSQILGANPDF------ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS------Y 107 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTC------H
T ss_pred HcCCCCHHHHHHHHHHHHHCchh------HHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCC------H
Confidence 3444 467799999988774322 23444555555544 4 899999999999877655 3
Q ss_pred HHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHhcc
Q 024043 113 RYYKEIAELYESEH--NIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE-QYHKSIEIYEEIARQSLNN 185 (273)
Q Consensus 113 ~~l~~lg~~~~~~g--~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g-~y~~A~~~~~~~~~~~~~~ 185 (273)
.+|..-+.++...+ +++++++++.+++++.... ..+|...+.+...+| .++++++++.+++...+.+
T Consensus 108 ~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N------~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n 177 (567)
T 1dce_A 108 GTWHHRCWLLSRLPEPNWARELELCARFLEADERN------FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN 177 (567)
T ss_dssp HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCC
T ss_pred HHHHHHHHHHHHcccccHHHHHHHHHHHHhhcccc------ccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCC
Confidence 48999999999999 6799999999999986433 478999999999999 9999999999998655554
No 213
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=97.62 E-value=0.0067 Score=51.60 Aligned_cols=140 Identities=9% Similarity=0.011 Sum_probs=103.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc---cCHHHHHHHHHHHHHH
Q 024043 25 FGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKK---TSSNEAISCLEQAVNM 101 (273)
Q Consensus 25 ~~~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~---~~~~eA~~~~~~Al~~ 101 (273)
++++|.++...+.. +.......++|+.++.+++.+.... ..+.+.-+.+... .++++++.++.+++.+
T Consensus 28 y~~~y~~~~~~~~a---~~~~~e~s~~aL~~t~~~L~~nP~~------~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~ 98 (306)
T 3dra_A 28 YDEDYKQIMGLLLA---LMKAEEYSERALHITELGINELASH------YTIWIYRFNILKNLPNRNLYDELDWCEEIALD 98 (306)
T ss_dssp CCHHHHHHHHHHHH---HHHTTCCSHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH
T ss_pred eCHHHHHHHHHHHH---HHHcCCCCHHHHHHHHHHHHHCcHH------HHHHHHHHHHHHHcccccHHHHHHHHHHHHHH
Confidence 34566666665543 2333444578999999998874321 2344445555533 2899999999999998
Q ss_pred HHhcCChhHHHHHHHHHHHHH----Hhc---CCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHH--HHH
Q 024043 102 FCDIGRLSMAARYYKEIAELY----ESE---HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYH--KSI 172 (273)
Q Consensus 102 ~~~~g~~~~~a~~l~~lg~~~----~~~---g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~--~A~ 172 (273)
..+.-. ++..-+.++ ... +++++++.++.++++..... ..++...+.+...+|.++ +++
T Consensus 99 nPk~y~------aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkn------y~aW~~R~~vl~~l~~~~~~~EL 166 (306)
T 3dra_A 99 NEKNYQ------IWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKN------HHVWSYRKWLVDTFDLHNDAKEL 166 (306)
T ss_dssp CTTCCH------HHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCTTCHHHH
T ss_pred CcccHH------HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcccChHHHH
Confidence 877654 777777777 666 78999999999999876433 478999999999999998 999
Q ss_pred HHHHHHHHHHhcc
Q 024043 173 EIYEEIARQSLNN 185 (273)
Q Consensus 173 ~~~~~~~~~~~~~ 185 (273)
+++.+++...+.+
T Consensus 167 ~~~~~~i~~d~~N 179 (306)
T 3dra_A 167 SFVDKVIDTDLKN 179 (306)
T ss_dssp HHHHHHHHHCTTC
T ss_pred HHHHHHHHhCCCC
Confidence 9999998766554
No 214
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.58 E-value=0.0071 Score=57.20 Aligned_cols=195 Identities=9% Similarity=-0.046 Sum_probs=123.7
Q ss_pred HHHHHHcCCHHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhc------CCh---
Q 024043 40 ANSFKLAKSWDKAG-ATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI------GRL--- 108 (273)
Q Consensus 40 ~~~~~~~~~~~~A~-~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~------g~~--- 108 (273)
+......|+.++|. ..|.+|...... + ...+...+.+.... ++++|.+.|++++...... +.+
T Consensus 350 a~~~~~~~~~~~a~r~il~rAi~~~P~--s----~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~ 423 (679)
T 4e6h_A 350 ANYQGEKNTDSTVITKYLKLGQQCIPN--S----AVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNE 423 (679)
T ss_dssp HHHHHHHSCCTTHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcch
Confidence 44455667777886 888888754321 1 22344455555444 8999999999999875311 001
Q ss_pred -------hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHH
Q 024043 109 -------SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE-QYHKSIEIYEEIAR 180 (273)
Q Consensus 109 -------~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g-~y~~A~~~~~~~~~ 180 (273)
...+.+|...+......|..+.|...|.+|+...... ...++...|.+-...+ +++.|..+|++++.
T Consensus 424 ~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~-----~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk 498 (679)
T 4e6h_A 424 SAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLV-----TPDIYLENAYIEYHISKDTKTACKVLELGLK 498 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGS-----CTHHHHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred hhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-----ChHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 1245577777777777788999999999998762111 1245667777766665 58999999999987
Q ss_pred HHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH----------HHHHH-----HhhcCHhHHHHHHHhhhccC
Q 024043 181 QSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ----------DIAAS-----MDEEDIAKFTDVVKEFDSMT 245 (273)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~----------~ll~a-----~~~~d~~~~~~~~~~~~~~~ 245 (273)
..+.++ ..+...+......|+..+|+..|++.. .+... ...|+.+.+..+..+.-...
T Consensus 499 ~~p~~~-------~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 499 YFATDG-------EYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp HHTTCH-------HHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred HCCCch-------HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 766542 122233333445688889988888743 12111 24577777777776666666
Q ss_pred CCchhHH
Q 024043 246 PLDPWKT 252 (273)
Q Consensus 246 ~ld~~~~ 252 (273)
+-++-+.
T Consensus 572 P~~~~~~ 578 (679)
T 4e6h_A 572 PEVNKLE 578 (679)
T ss_dssp TTCCHHH
T ss_pred CCCcHHH
Confidence 6554433
No 215
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=97.54 E-value=0.036 Score=48.77 Aligned_cols=150 Identities=9% Similarity=-0.004 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCCh
Q 024043 31 DAADLFDKAANSFKL-AKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRL 108 (273)
Q Consensus 31 ~A~~~~~~a~~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~ 108 (273)
+++.+-...-..|.. -+..+.-++....+.+....-+..+-.-..=.++|..|... ++.+|.+.+.+...-....++.
T Consensus 56 k~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~ 135 (394)
T 3txn_A 56 KAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDK 135 (394)
T ss_dssp HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCT
T ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccc
Confidence 333433333334433 34566667777777777766555544444555788888777 9999999999999988888888
Q ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc-CCcccHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHH
Q 024043 109 SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE-EVTTSANQCKQKVAQYAA-ELEQYHKSIEIYEEIAR 180 (273)
Q Consensus 109 ~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~-~~~~~~~~~~~~~a~~~~-~~g~y~~A~~~~~~~~~ 180 (273)
...-.++..-..+|...+++.++...|.+|..+.... .+|...+.....-|.++. ..++|..|..+|-++..
T Consensus 136 ~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 136 NLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 8888888888899999999999999999999887765 555566677777788888 89999999999988853
No 216
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.39 E-value=0.0029 Score=54.49 Aligned_cols=123 Identities=8% Similarity=0.046 Sum_probs=87.7
Q ss_pred HcCCHH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-----------CHHHHHHHHHHHHHHHHhcCChhHHH
Q 024043 45 LAKSWD-KAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-----------SSNEAISCLEQAVNMFCDIGRLSMAA 112 (273)
Q Consensus 45 ~~~~~~-~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-----------~~~eA~~~~~~Al~~~~~~g~~~~~a 112 (273)
..|.++ +|+.++.+++.+..+. -.+..+ -+.+.... .+++++.++..++...+++ .
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~----ytaWn~--Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKn------y 108 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDF----ATLWNC--RREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS------Y 108 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTC----HHHHHH--HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC------H
T ss_pred HcCCCCHHHHHHHHHHHHHCchh----HHHHHH--HHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCC------H
Confidence 455554 7788888877664221 122222 22332222 2578888888888766554 3
Q ss_pred HHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHhcc
Q 024043 113 RYYKEIAELYESEH--NIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQ-YHKSIEIYEEIARQSLNN 185 (273)
Q Consensus 113 ~~l~~lg~~~~~~g--~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~-y~~A~~~~~~~~~~~~~~ 185 (273)
.+|..-+.++...| .+++++.++.+++++.... ..++...+.+....|. ++++++++.+++...+.+
T Consensus 109 ~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprN------y~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N 178 (331)
T 3dss_A 109 GTWHHRCWLLSRLPEPNWARELELCARFLEADERN------FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN 178 (331)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCC
T ss_pred HHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCC
Confidence 48888999999988 4899999999999875432 4678889999999998 699999999999776665
No 217
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.36 E-value=0.021 Score=53.95 Aligned_cols=179 Identities=8% Similarity=0.061 Sum_probs=119.8
Q ss_pred CCHHHHH-HHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHH--------cCC--------HHHHHHH
Q 024043 27 SKYEDAA-DLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLK--------LES--------KHEAAQA 75 (273)
Q Consensus 27 ~~~~~A~-~~~~~a--------------~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~--------~~~aa~~ 75 (273)
++.++|. ..|.+| +.+....|+++.|...|++++..... .+. ......+
T Consensus 357 ~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~v 436 (679)
T 4e6h_A 357 NTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYV 436 (679)
T ss_dssp SCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHH
Confidence 5556665 666665 44566789999999999999987521 111 1123345
Q ss_pred HHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHhccCCcccHHH
Q 024043 76 YVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE-HNIEQTIVFFEKAADMFQNEEVTTSANQ 153 (273)
Q Consensus 76 ~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~-g~~~~A~~~y~~Al~~~~~~~~~~~~~~ 153 (273)
+...+.+.++. +.+.|...|.+|+...... ...++...+.+-... ++++.|...|+++++.+... ..
T Consensus 437 Wi~y~~~erR~~~l~~AR~vf~~A~~~~~~~-----~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~------~~ 505 (679)
T 4e6h_A 437 YCVYMNTMKRIQGLAASRKIFGKCRRLKKLV-----TPDIYLENAYIEYHISKDTKTACKVLELGLKYFATD------GE 505 (679)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHTGGGS-----CTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTC------HH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-----ChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCc------hH
Confidence 55666666555 8899999999998752111 124566666665555 45999999999999998643 34
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043 154 CKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ 220 (273)
Q Consensus 154 ~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~ 220 (273)
.+..++......|+.++|..+|++++...+.. ......+.....--...|+...+....+++.
T Consensus 506 ~w~~y~~fe~~~~~~~~AR~lferal~~~~~~----~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~ 568 (679)
T 4e6h_A 506 YINKYLDFLIYVNEESQVKSLFESSIDKISDS----HLLKMIFQKVIFFESKVGSLNSVRTLEKRFF 568 (679)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHTTTSSST----THHHHHHHHHHHHHHHTCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCH----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 56788888889999999999999997543310 0122223222333345799999888888864
No 218
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.28 E-value=0.029 Score=51.07 Aligned_cols=187 Identities=11% Similarity=0.041 Sum_probs=112.5
Q ss_pred HhhHHHHHHHHHHhhccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 024043 5 IARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYK 84 (273)
Q Consensus 5 ~~~a~~l~~~Aek~~k~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~ 84 (273)
.+.++.|.+++.++... .+| + ..+...-..|...|++++|...|.++...--+. + ..+|+.+..++.
T Consensus 6 ~s~~e~L~~~~~~k~~~---~sp---e--~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~p-d----~~tyn~Li~~c~ 72 (501)
T 4g26_A 6 ASPSENLSRKAKKKAIQ---QSP---E--ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQL-S----QYHYNVLLYVCS 72 (501)
T ss_dssp ---------------------CH---H--HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCC-C----HHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHhccc---CCC---H--HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-C----HhHHHHHHHHHH
Confidence 45556666665553221 122 2 235556778889999999999999876532111 1 245666666665
Q ss_pred cc----------CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHH
Q 024043 85 KT----------SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQC 154 (273)
Q Consensus 85 ~~----------~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~ 154 (273)
.. +.++|.+.|++-. ..|-.. -..+++.+-..|...|++++|.+.+++-.. .|-... ..+
T Consensus 73 ~~~~~~~~~~~~~l~~A~~lf~~M~----~~G~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~----~g~~Pd-~~t 142 (501)
T 4g26_A 73 LAEAATESSPNPGLSRGFDIFKQMI----VDKVVP-NEATFTNGARLAVAKDDPEMAFDMVKQMKA----FGIQPR-LRS 142 (501)
T ss_dssp TCCCCSSSSCCHHHHHHHHHHHHHH----HTTCCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----TTCCCC-HHH
T ss_pred hCCchhhhhhcchHHHHHHHHHHHH----HhCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCc-cce
Confidence 43 2455666665432 223211 134677888888888999999999987543 232223 356
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043 155 KQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ 220 (273)
Q Consensus 155 ~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~ 220 (273)
+..+-..+.+.|+.++|.++|++.....+. . . ...+..+..++...|+.++|.+.+++..
T Consensus 143 yn~lI~~~~~~g~~~~A~~l~~~M~~~G~~--P---d-~~ty~~Li~~~~~~g~~d~A~~ll~~Mr 202 (501)
T 4g26_A 143 YGPALFGFCRKGDADKAYEVDAHMVESEVV--P---E-EPELAALLKVSMDTKNADKVYKTLQRLR 202 (501)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCC--C---C-HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ehHHHHHHHHCCCHHHHHHHHHHHHhcCCC--C---C-HHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 888888999999999999999988543221 1 1 1234555667888999999999998864
No 219
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.27 E-value=0.0066 Score=46.46 Aligned_cols=99 Identities=8% Similarity=-0.057 Sum_probs=74.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHhccCC---cccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh---ccch------
Q 024043 120 ELYESEHNIEQTIVFFEKAADMFQNEEV---TTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSL---NNNL------ 187 (273)
Q Consensus 120 ~~~~~~g~~~~A~~~y~~Al~~~~~~~~---~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~---~~~~------ 187 (273)
.-+...|.|+.|+-.+..++.+.....+ +....+++..+|+.++..|+|.+|...|++++...- ..+.
T Consensus 28 k~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~ 107 (167)
T 3ffl_A 28 RDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTG 107 (167)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----------
T ss_pred HHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccccc
Confidence 3334449999999999999999875543 567789999999999999999999999999863211 0000
Q ss_pred ---------hhhchhhHHHHHHHHHHhcCCHHHHHHHHHH
Q 024043 188 ---------LKYGVKGHLLNAGICQLCKGDVVAITNALER 218 (273)
Q Consensus 188 ---------~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~ 218 (273)
...+..+.-+++..||...++...|...++.
T Consensus 108 ~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 108 NSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp ---------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred ccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 0122336778899999999999888777654
No 220
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.17 E-value=0.0039 Score=47.21 Aligned_cols=72 Identities=17% Similarity=0.121 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccc
Q 024043 111 AARYYKEIAELYESEH---NIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNN 186 (273)
Q Consensus 111 ~a~~l~~lg~~~~~~g---~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~ 186 (273)
...+..+.|.++.... +.++++.++++.++.- .|....+|+..+|..+.++|+|++|.+++++++...+++.
T Consensus 31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~----~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~ 105 (152)
T 1pc2_A 31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG----SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNN 105 (152)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS----CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC----CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH
Confidence 3467888899998887 5669999999877742 2334568999999999999999999999999998888764
No 221
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.04 E-value=0.014 Score=50.80 Aligned_cols=150 Identities=13% Similarity=-0.033 Sum_probs=91.9
Q ss_pred CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHH
Q 024043 87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE----HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYA 162 (273)
Q Consensus 87 ~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~----g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~ 162 (273)
+..+|+.+|++|+++-+.... ++..++.+|... +.......-..+++............+.++..++.++
T Consensus 214 ~~~~A~~l~e~Al~lDP~~a~------A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~ 287 (372)
T 3ly7_A 214 SLNRASELLGEIVQSSPEFTY------ARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSA 287 (372)
T ss_dssp HHHHHHHHHHHHHHHCTTCHH------HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHH
Confidence 568999999999988665432 344444444321 1122233334444443333222233456788888888
Q ss_pred HHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCHhH--HHHHHHh
Q 024043 163 AELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDIAASMDEEDIAK--FTDVVKE 240 (273)
Q Consensus 163 ~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~ll~a~~~~d~~~--~~~~~~~ 240 (273)
...|++++|+..+++++...+ + ...+..+|.++...|++++|.+.+++...+ +...+. +-+-+.=
T Consensus 288 l~~gd~d~A~~~l~rAl~Ln~-------s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL-----~P~~~t~~~~~~l~F 354 (372)
T 3ly7_A 288 LVKGKTDESYQAINTGIDLEM-------S-WLNYVLLGKVYEMKGMNREAADAYLTAFNL-----RPGANTLYWIENGIF 354 (372)
T ss_dssp HHHTCHHHHHHHHHHHHHHCC-------C-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----SCSHHHHHHHHHSSS
T ss_pred HhCCCHHHHHHHHHHHHhcCC-------C-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCCcChHHHHhCcee
Confidence 888999999999999986532 1 124456788999999999999999886422 111111 1122222
Q ss_pred hhccCCCchhHHHHH
Q 024043 241 FDSMTPLDPWKTTLL 255 (273)
Q Consensus 241 ~~~~~~ld~~~~~~l 255 (273)
|.+++++||.+..++
T Consensus 355 ~sn~~~i~~~~~~~~ 369 (372)
T 3ly7_A 355 QTSVPYVVPYLDKFL 369 (372)
T ss_dssp CCCHHHHCHHHHHHH
T ss_pred ecchhhhHHHHHhcc
Confidence 566777777776654
No 222
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.01 E-value=0.0043 Score=53.78 Aligned_cols=161 Identities=11% Similarity=-0.053 Sum_probs=106.8
Q ss_pred HHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhccCCcccHHHHHHHHH
Q 024043 82 CYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEH-NIEQTIVFFEKAADMFQNEEVTTSANQCKQKVA 159 (273)
Q Consensus 82 ~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g-~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a 159 (273)
+.... ..++|++++.+++.+..+.- .+++.-+.++..+| .+++++.++.+++....+. ..++...+
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~nP~~y------taWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKn------y~aW~hR~ 130 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMNPAHY------TVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKS------YQVWHHRL 130 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCC------HHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHhCchhH------HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCc------HHHHHHHH
Confidence 33334 66789999999998876653 48888899999998 5999999999999776533 46788889
Q ss_pred HHHHHh-c-CHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHH--------HHHHHHHHHH---------
Q 024043 160 QYAAEL-E-QYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVV--------AITNALERYQ--------- 220 (273)
Q Consensus 160 ~~~~~~-g-~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~--------~A~~~~~~~~--------- 220 (273)
.++..+ + +++++++++.+++...+.+. .++..-+-+....|... ++.+.+++..
T Consensus 131 wlL~~l~~~~~~~EL~~~~k~L~~dpkNy-------~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SA 203 (349)
T 3q7a_A 131 LLLDRISPQDPVSEIEYIHGSLLPDPKNY-------HTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSA 203 (349)
T ss_dssp HHHHHHCCSCCHHHHHHHHHHTSSCTTCH-------HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHH
Confidence 999888 8 99999999999975544432 12222222222222222 4444444332
Q ss_pred -----HHHHHHhh--cCHhHHHHHHHhhhccCCCchhHHHHHHHHHHh
Q 024043 221 -----DIAASMDE--EDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEK 261 (273)
Q Consensus 221 -----~ll~a~~~--~d~~~~~~~~~~~~~~~~ld~~~~~~l~~~~~~ 261 (273)
-++..+.. ++.+.+.+.+..++..+.+||-....+.-.+-.
T Consensus 204 W~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~L 251 (349)
T 3q7a_A 204 WGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGF 251 (349)
T ss_dssp HHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 22322221 345568888998888888888776665544433
No 223
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.01 E-value=0.0032 Score=43.55 Aligned_cols=66 Identities=11% Similarity=0.075 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Q 024043 112 ARYYKEIAELYESEHN---IEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSL 183 (273)
Q Consensus 112 a~~l~~lg~~~~~~g~---~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~ 183 (273)
+..+..+|.++...++ .++|..++++|+.+-... ..++..+|.++...|+|++|+.+|++++...+
T Consensus 6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~------~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYN------EAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4567777888765544 799999999999985432 46788899999999999999999999975433
No 224
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.80 E-value=0.05 Score=48.42 Aligned_cols=192 Identities=13% Similarity=0.099 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHH
Q 024043 54 ATYVKLANCHLK-LESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQT 131 (273)
Q Consensus 54 ~~~~~a~~~~~~-~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A 131 (273)
+-+.....-..+ .........++..+|..|.+. ++++|+++|.++.+.....+. ....+..+-.++...+++..+
T Consensus 111 ~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~---kid~~l~~irl~l~~~d~~~~ 187 (429)
T 4b4t_R 111 KELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGA---KIDVMLTIARLGFFYNDQLYV 187 (429)
T ss_dssp HHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCS---HHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHH---HHHHHHHHHHHHHHhccHHHH
Confidence 334444444433 222233445677888888766 999999999998775544433 233444444555556999999
Q ss_pred HHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHH
Q 024043 132 IVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVA 211 (273)
Q Consensus 132 ~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~ 211 (273)
..++.+|..+....+++...+......|.++...++|..|...|-.+......... ..........++|.+...+...
T Consensus 188 ~~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~~e~--~~~~~~~~y~~l~al~~~~r~~ 265 (429)
T 4b4t_R 188 KEKLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFTSIEL--TSYESIATYASVTGLFTLERTD 265 (429)
T ss_dssp HHHHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSCCSCH--HHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCCccch--hhHHHHHHHHHHHHHhcCCHHH
Confidence 99999999999888876555566666777788889999999999887643222211 1222333445566555444322
Q ss_pred H----------HH------HHHHHHHHHHHHhhcCHhH-HHHHHHhhhccCCCchh
Q 024043 212 I----------TN------ALERYQDIAASMDEEDIAK-FTDVVKEFDSMTPLDPW 250 (273)
Q Consensus 212 A----------~~------~~~~~~~ll~a~~~~d~~~-~~~~~~~~~~~~~ld~~ 250 (273)
- .. .+..+..++.++-.++... +...+..+......|++
T Consensus 266 l~~~v~~~~~~~~~l~~~p~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~d~~ 321 (429)
T 4b4t_R 266 LKSKVIDSPELLSLISTTAALQSISSLTISLYASDYASYFPYLLETYANVLIPCKY 321 (429)
T ss_dssp HHHSSSSSHHHHHGGGSHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHSTTTTTCTT
T ss_pred HHHHHhcCHHHHhhccCChhHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhccCHH
Confidence 1 11 1222335566665555544 45556666666665654
No 225
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.63 E-value=0.0039 Score=52.41 Aligned_cols=86 Identities=13% Similarity=0.167 Sum_probs=69.9
Q ss_pred CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHH
Q 024043 87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE-----HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQY 161 (273)
Q Consensus 87 ~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~-----g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~ 161 (273)
...+|...+++|+++-.. ...+.++..+|.+|... |+.++|.++|++|+++..... ..++.-+|..
T Consensus 178 ~l~~A~a~lerAleLDP~----~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~-----id~~v~YA~~ 248 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPS----YQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHD-----PDHHITYADA 248 (301)
T ss_dssp HHHHHHHHHHHHHHHCTT----HHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTC-----SHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCC----cccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCC-----chHHHHHHHH
Confidence 357888888888887443 34567999999999995 999999999999999976321 3567888998
Q ss_pred HHH-hcCHHHHHHHHHHHHHH
Q 024043 162 AAE-LEQYHKSIEIYEEIARQ 181 (273)
Q Consensus 162 ~~~-~g~y~~A~~~~~~~~~~ 181 (273)
++. .|++++|..++++++..
T Consensus 249 l~~~~gd~~~a~~~L~kAL~a 269 (301)
T 3u64_A 249 LCIPLNNRAGFDEALDRALAI 269 (301)
T ss_dssp TTTTTTCHHHHHHHHHHHHHC
T ss_pred HHHhcCCHHHHHHHHHHHHcC
Confidence 888 49999999999999754
No 226
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.62 E-value=0.11 Score=46.49 Aligned_cols=118 Identities=10% Similarity=0.031 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHH-HHHhcCChh
Q 024043 32 AADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVN-MFCDIGRLS 109 (273)
Q Consensus 32 A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~-~~~~~g~~~ 109 (273)
-+.+-...+.+|...|++.+|.+.......=.....+.......+.....+|... ++.+|...+.++.. .+.....+.
T Consensus 136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~ 215 (445)
T 4b4t_P 136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYES 215 (445)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHH
Confidence 4557778899999999999999988876533334456677777777777777666 99999999999865 555566778
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcc
Q 024043 110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTT 149 (273)
Q Consensus 110 ~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~ 149 (273)
..+..+.-.|.++...++|.+|..+|..+.+.+...+++.
T Consensus 216 lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~ 255 (445)
T 4b4t_P 216 LKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEA 255 (445)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHH
Confidence 8899999999999999999999999999998887666543
No 227
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.60 E-value=0.026 Score=42.68 Aligned_cols=82 Identities=7% Similarity=0.023 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHH
Q 024043 128 IEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE---QYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQL 204 (273)
Q Consensus 128 ~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g---~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l 204 (273)
...+.+.|.+++. .+. ...++.+++|.++++.. +..+++.+++.++... .| ...+++++++++.+.
T Consensus 14 l~~~~~~y~~e~~----~~~--~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~--~p---~~~rd~lY~LAv~~~ 82 (152)
T 1pc2_A 14 LLKFEKKFQSEKA----AGS--VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG--SK---EEQRDYVFYLAVGNY 82 (152)
T ss_dssp HHHHHHHHHHHHH----TTC--CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS--CH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc----cCC--CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--Cc---cchHHHHHHHHHHHH
Confidence 3445555655543 122 23578999999999988 6679999999997643 11 134678899999999
Q ss_pred hcCCHHHHHHHHHHHH
Q 024043 205 CKGDVVAITNALERYQ 220 (273)
Q Consensus 205 ~~gd~~~A~~~~~~~~ 220 (273)
..||+.+|+++++...
T Consensus 83 kl~~Y~~A~~y~~~lL 98 (152)
T 1pc2_A 83 RLKEYEKALKYVRGLL 98 (152)
T ss_dssp HTSCHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHH
Confidence 9999999999999864
No 228
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.59 E-value=0.17 Score=47.88 Aligned_cols=86 Identities=7% Similarity=0.006 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhcc-CHHHHHHHHHHH------HHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC
Q 024043 74 QAYVDAAHCYKKT-SSNEAISCLEQA------VNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEE 146 (273)
Q Consensus 74 ~~~~~~~~~~~~~-~~~eA~~~~~~A------l~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~ 146 (273)
..+.++|..+.+. +++.|..||.++ ..++...|+.. .+..++.+....|++..|..+|.+ .|
T Consensus 682 ~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~----~~~~~~~~a~~~~~~~~A~~~~~~-------~g 750 (814)
T 3mkq_A 682 MKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKE----GLVTLAKDAETTGKFNLAFNAYWI-------AG 750 (814)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHH----HHHHHHHHHHHTTCHHHHHHHHHH-------HT
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHH----HHHHHHHHHHHcCchHHHHHHHHH-------cC
Confidence 4667888888766 899999888775 44444455433 244566666666777776666543 12
Q ss_pred CcccHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 024043 147 VTTSANQCKQKVAQYAAELEQYHKSIEIYEE 177 (273)
Q Consensus 147 ~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~ 177 (273)
+. ...-.+|.+++++++|+.+-++
T Consensus 751 ~~-------~~a~~~~~~~~~~~~A~~lA~~ 774 (814)
T 3mkq_A 751 DI-------QGAKDLLIKSQRFSEAAFLGST 774 (814)
T ss_dssp CH-------HHHHHHHHHTTCHHHHHHHHHH
T ss_pred CH-------HHHHHHHHHcCChHHHHHHHHH
Confidence 21 1223455666666666665544
No 229
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.54 E-value=0.28 Score=41.11 Aligned_cols=84 Identities=13% Similarity=0.232 Sum_probs=62.7
Q ss_pred CHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHH
Q 024043 127 NIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAEL-----EQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGI 201 (273)
Q Consensus 127 ~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~-----g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl 201 (273)
...+|...+++|+++-+.- ..+.++..+|.+|... |+.++|.++|++++...++... ...+-.+.
T Consensus 178 ~l~~A~a~lerAleLDP~~----~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~i------d~~v~YA~ 247 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSY----QEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDP------DHHITYAD 247 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTH----HHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCS------HHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCc----ccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCc------hHHHHHHH
Confidence 3678899999999996532 3456899999999995 9999999999999987775411 12233344
Q ss_pred HHHh-cCCHHHHHHHHHHHH
Q 024043 202 CQLC-KGDVVAITNALERYQ 220 (273)
Q Consensus 202 ~~l~-~gd~~~A~~~~~~~~ 220 (273)
.+.. .||...|.+.+++..
T Consensus 248 ~l~~~~gd~~~a~~~L~kAL 267 (301)
T 3u64_A 248 ALCIPLNNRAGFDEALDRAL 267 (301)
T ss_dssp HTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHH
Confidence 4444 589999999999864
No 230
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.37 E-value=0.016 Score=39.93 Aligned_cols=65 Identities=15% Similarity=-0.034 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhcc----CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 024043 74 QAYVDAAHCYKKT----SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQN 144 (273)
Q Consensus 74 ~~~~~~~~~~~~~----~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~ 144 (273)
..+...|.++... ..++|..++++|+.+-..+ .+++..+|..+...|+|++|+.+++++++....
T Consensus 7 ~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~------~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 7 TQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYN------EAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp HHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4455566665322 4799999999999986655 358899999999999999999999999987665
No 231
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=96.30 E-value=0.42 Score=40.47 Aligned_cols=196 Identities=12% Similarity=0.008 Sum_probs=132.7
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc--CHHHHHHHHHHHHHHHHh
Q 024043 27 SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT--SSNEAISCLEQAVNMFCD 104 (273)
Q Consensus 27 ~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~--~~~eA~~~~~~Al~~~~~ 104 (273)
.+|++|+++....+..+-..|++..|.+.-.-.++++.+.+.+.. .....++..++... ...+=.++..+|+.-..+
T Consensus 47 ~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~-~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~ 125 (312)
T 2wpv_A 47 KSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVD-DISVARLVRLIAELDPSEPNLKDVITGMNNWSIK 125 (312)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCS-HHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhh
Confidence 799999999999999999999999999999999999988774432 23566777787765 222346777888888877
Q ss_pred cCC-hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHH------------HHHHhcc--CCcccHHHHH-HHHHHHHHHhcCH
Q 024043 105 IGR-LSMAARYYKEIAELYESEHNIEQTIVFFEKA------------ADMFQNE--EVTTSANQCK-QKVAQYAAELEQY 168 (273)
Q Consensus 105 ~g~-~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~A------------l~~~~~~--~~~~~~~~~~-~~~a~~~~~~g~y 168 (273)
.|. +.+-......+|..|...|++.+|..+|-.. .+.+... +.+.. ...+ .+....|..+|+.
T Consensus 126 ~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e-~dlf~~RaVL~yL~l~n~ 204 (312)
T 2wpv_A 126 FSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDST-VAEFFSRLVFNYLFISNI 204 (312)
T ss_dssp TSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHH-HHHHHHHHHHHHHHTTBH
T ss_pred cCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcch-HHHHHHHHHHHHHHhcCH
Confidence 755 6677788999999999999999999988421 2333332 43333 3333 4444456788999
Q ss_pred HHHHHHHHHHHHHHhc------------cchhhh-c-hh-hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 024043 169 HKSIEIYEEIARQSLN------------NNLLKY-G-VK-GHLLNAGICQLCKGDVVAITNALERYQDIAA 224 (273)
Q Consensus 169 ~~A~~~~~~~~~~~~~------------~~~~~~-~-~~-~~~~~~gl~~l~~gd~~~A~~~~~~~~~ll~ 224 (273)
..|...|......... ....++ . .. --+..+.+.-+..++..-.+...+.|...|+
T Consensus 205 ~~A~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~p~~pllnF~~lLl~t~e~~~~~lF~~L~~~Y~~~L~ 275 (312)
T 2wpv_A 205 SFAHESKDIFLERFIEKFHPKYEKIDKNGYEIVFFEDYSDLNFLQLLLITCQTKDKSYFLNLKNHYLDFSQ 275 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCEEEEEETTEEEEEESSCHHHHHHHHHHHHHHHTCHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcccccccccccccCCCCCCCCccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 9999988876533211 000011 0 00 1222333444556777777788888887776
No 232
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=96.07 E-value=0.45 Score=43.12 Aligned_cols=151 Identities=11% Similarity=0.073 Sum_probs=94.3
Q ss_pred HHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcC---------CHHHHHHHHHHHHHHHhcc
Q 024043 76 YVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEH---------NIEQTIVFFEKAADMFQNE 145 (273)
Q Consensus 76 ~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g---------~~~~A~~~y~~Al~~~~~~ 145 (273)
+..+-+.|.+. ++++|++.|++.... |-.. -..+++.+=.++...+ ..++|.+.|.+-. ..
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~----Gv~p-d~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~----~~ 99 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRN----GVQL-SQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMI----VD 99 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHH----TCCC-CHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHH----HT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHc----CCCC-CHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHH----Hh
Confidence 44445555444 999999999887643 2111 1224444444444333 3566666665432 23
Q ss_pred CCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH-----
Q 024043 146 EVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ----- 220 (273)
Q Consensus 146 ~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~----- 220 (273)
|-... ..++..+-..+.+.|++++|.++|++....... .. ...|..+...+...|+.+.|.+.|++..
T Consensus 100 G~~Pd-~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~-----Pd-~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~ 172 (501)
T 4g26_A 100 KVVPN-EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQ-----PR-LRSYGPALFGFCRKGDADKAYEVDAHMVESEVV 172 (501)
T ss_dssp TCCCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCC-----CC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCC
T ss_pred CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----Cc-cceehHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 33333 357888999999999999999999987532211 11 1234455566788999999999998754
Q ss_pred -------HHHHHH-hhcCHhHHHHHHHhhh
Q 024043 221 -------DIAASM-DEEDIAKFTDVVKEFD 242 (273)
Q Consensus 221 -------~ll~a~-~~~d~~~~~~~~~~~~ 242 (273)
.+|.++ ..|+.++..+.+.+-.
T Consensus 173 Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr 202 (501)
T 4g26_A 173 PEEPELAALLKVSMDTKNADKVYKTLQRLR 202 (501)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 677776 5577776666665543
No 233
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.94 E-value=0.13 Score=45.67 Aligned_cols=106 Identities=13% Similarity=0.020 Sum_probs=86.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHH
Q 024043 38 KAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYK 116 (273)
Q Consensus 38 ~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~ 116 (273)
..|..|...|++++|.++|.++..-....+. ....+.....++... ++..+..++.++..+....|++...++...
T Consensus 136 ~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~---kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 136 NLGEYYAQIGDKDNAEKTLGKSLSKAISTGA---KIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp HHHHHHHHHCCCTTHHHHHHHHHHHHTCCCS---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCChHH---HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 4688899999999999999998776544443 344555555555444 999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhccC
Q 024043 117 EIAELYESEHNIEQTIVFFEKAADMFQNEE 146 (273)
Q Consensus 117 ~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~ 146 (273)
-.|.++...++|..|..+|..+..-+...+
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~~~~e 242 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLATFTSIE 242 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHHSCCSC
T ss_pred HHHHHHHHhChHHHHHHHHHHHhccCCccc
Confidence 999999999999999999999887775544
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.70 E-value=0.12 Score=37.63 Aligned_cols=71 Identities=15% Similarity=0.106 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHhcCCHHH---HHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccc
Q 024043 112 ARYYKEIAELYESEHNIEQ---TIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNN 186 (273)
Q Consensus 112 a~~l~~lg~~~~~~g~~~~---A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~ 186 (273)
..+..+.|.++....+... ++.+++.-+. . +.+.....|+..+|..+.++|+|++|..+++.++...++++
T Consensus 35 ~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~---~-~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~ 108 (126)
T 1nzn_A 35 KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP---K-GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNN 108 (126)
T ss_dssp HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT---T-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh---c-CCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCH
Confidence 3577788888888766655 6666665332 2 22445679999999999999999999999999998888774
No 235
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.55 E-value=1 Score=42.49 Aligned_cols=26 Identities=15% Similarity=0.239 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 024043 113 RYYKEIAELYESEHNIEQTIVFFEKA 138 (273)
Q Consensus 113 ~~l~~lg~~~~~~g~~~~A~~~y~~A 138 (273)
..|.++|..+...|+++.|.++|.++
T Consensus 682 ~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 682 MKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 58899999999999999999999875
No 236
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=95.40 E-value=1.5 Score=39.57 Aligned_cols=64 Identities=9% Similarity=-0.052 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHH
Q 024043 112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE-QYHKSIEIYEEIARQS 182 (273)
Q Consensus 112 a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g-~y~~A~~~~~~~~~~~ 182 (273)
..++..-+......+..+.|...|.+| . ..+ . ...++...|.+-...+ +++.|..+|++++...
T Consensus 286 ~~lw~~y~~~~~r~~~~~~AR~i~~~A-~---~~~--~-~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~ 350 (493)
T 2uy1_A 286 DLLRINHLNYVLKKRGLELFRKLFIEL-G---NEG--V-GPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH 350 (493)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHH-T---TSC--C-CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHh-h---CCC--C-ChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC
Confidence 345555555555555677777777776 1 111 1 1234555555555555 4677777777766543
No 237
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=94.54 E-value=2.5 Score=37.97 Aligned_cols=46 Identities=4% Similarity=0.104 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 024043 127 NIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEI 178 (273)
Q Consensus 127 ~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~ 178 (273)
+++.|...|++++..+.. . ...+...++.....|+.++|..+|+++
T Consensus 335 d~~~ar~ife~al~~~~~--~----~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 335 SRATPYNIFSSGLLKHPD--S----TLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp CSHHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred ChHHHHHHHHHHHHHCCC--C----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 456666666666655421 1 123444555555566666666666654
No 238
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.20 E-value=1.3 Score=33.28 Aligned_cols=120 Identities=8% Similarity=0.115 Sum_probs=81.7
Q ss_pred HHHHHHHHHHhcCCH------HHHHHHHHHHHHHHhccCCcc--cHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043 114 YYKEIAELYESEHNI------EQTIVFFEKAADMFQNEEVTT--SANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN 185 (273)
Q Consensus 114 ~l~~lg~~~~~~g~~------~~A~~~y~~Al~~~~~~~~~~--~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~ 185 (273)
.|-.-....+..|++ ++-++.|++|+...+-..... .-...+.++|.. ...++.++|.++|+.++.. .
T Consensus 15 ~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~---h 90 (161)
T 4h7y_A 15 DWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARAN---C 90 (161)
T ss_dssp HHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHH---C
T ss_pred HHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHH---h
Confidence 344444555555777 888899999998876654333 334666777755 5669999999999999763 2
Q ss_pred chhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCHhHHHHHHHhhhccC
Q 024043 186 NLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDIAASMDEEDIAKFTDVVKEFDSMT 245 (273)
Q Consensus 186 ~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~ll~a~~~~d~~~~~~~~~~~~~~~ 245 (273)
.++ +..+.....--+.+|+..+|++.+.+... +...+.+.++.++.....-.
T Consensus 91 --KkF--AKiwi~~AqFEiRqgnl~kARkILg~AiG----~~~k~~~~le~a~~nl~~~~ 142 (161)
T 4h7y_A 91 --KKF--AFVHISFAQFELSQGNVKKSKQLLQKAVE----RGAVPLEMLEIALRNLNLQK 142 (161)
T ss_dssp --TTB--HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TTCBCHHHHHHHHHHHHTTC
T ss_pred --HHH--HHHHHHHHHHHHHcccHHHHHHHHHHHhc----cCCCcHHHHHHHHHhhhcCC
Confidence 133 22333333334669999999999999732 45667788888887765433
No 239
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=94.03 E-value=2.5 Score=36.02 Aligned_cols=195 Identities=10% Similarity=0.121 Sum_probs=129.0
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc---CHHHHHHHHHHHHHHHH
Q 024043 27 SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT---SSNEAISCLEQAVNMFC 103 (273)
Q Consensus 27 ~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~---~~~eA~~~~~~Al~~~~ 103 (273)
++|++|+++....+..+...|++..+.+.-.-.++++.+.+-+... ....++..++... .+. =..+..+|+.-..
T Consensus 49 k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~-~~~~rL~~L~~~~~~~~p~-r~~fi~~ai~WS~ 126 (336)
T 3lpz_A 49 GNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDG-ASRGKLLGCLRLFQPGEPV-RKRFVKEMIDWSK 126 (336)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHTTSCTTCHH-HHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhCCCCCcH-HHHHHHHHHHHHh
Confidence 7999999999999999999999999999999999999887633222 4666788888776 333 3566777777776
Q ss_pred hcC-ChhHHHHHHHHHHHHHHhcCCHHHHHHHHHH------------HHHHHhccCCcccHHHHHHHHHHHHHHhcCHHH
Q 024043 104 DIG-RLSMAARYYKEIAELYESEHNIEQTIVFFEK------------AADMFQNEEVTTSANQCKQKVAQYAAELEQYHK 170 (273)
Q Consensus 104 ~~g-~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~------------Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~ 170 (273)
+.| .+.+-......+|..|.+.+++.+|..+|-- -.+++...+ +....-...+.-..|..+++...
T Consensus 127 ~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~-~~e~dlfiaRaVL~yL~l~n~~~ 205 (336)
T 3lpz_A 127 KFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDE-SHTAPLYCARAVLPYLLVANVRA 205 (336)
T ss_dssp HHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSC-GGGHHHHHHHHHHHHHHTTCHHH
T ss_pred hcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHhCCHHH
Confidence 654 3556667888999999999999999887731 122233333 33333333444456778899999
Q ss_pred HHHHHHHHHHHHhc-cchhh-------------h-chh-hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 024043 171 SIEIYEEIARQSLN-NNLLK-------------Y-GVK-GHLLNAGICQLCKGDVVAITNALERYQDIAA 224 (273)
Q Consensus 171 A~~~~~~~~~~~~~-~~~~~-------------~-~~~-~~~~~~gl~~l~~gd~~~A~~~~~~~~~ll~ 224 (273)
|...+......... .+... + ... --+..+.++-+..+...-.+...+.|...++
T Consensus 206 A~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLLNFl~lLllt~q~~~~~lF~~L~~~Y~~~l~ 275 (336)
T 3lpz_A 206 ANTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLLNFISMLLLSVQKGSPDLFRQLKSKYEANLN 275 (336)
T ss_dssp HHHHHHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHHHHHHHHHHHHHHSCCHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCccccccccCCcccccCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 98877665432111 11000 0 000 1133344445566777777777778876665
No 240
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=93.87 E-value=0.32 Score=38.50 Aligned_cols=88 Identities=9% Similarity=0.133 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHH-----HHHHHHHH
Q 024043 152 NQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALER-----YQDIAASM 226 (273)
Q Consensus 152 ~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~-----~~~ll~a~ 226 (273)
..-+.-+|.++...++|.+|-+.+..+...++.+. ......++.-+..+.+..|++.. ...++. |..+..|+
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~--~~~k~~IL~yLIp~~Ll~G~iP~-~~ll~~~~~~~y~~L~~Av 90 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS--QKNKRMILIYLLPVKMLLGHMPT-VELLKKYHLMQFAEVTRAV 90 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC--HHHHHHHHHHHHHHHHHTTCEEC-HHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH--HHHHHHHHHHHHHHHHHcCCCCC-HHHhhhCchhHHHHHHHHH
Confidence 44567788888888888888888888876554331 11122233334556677777533 233333 55888999
Q ss_pred hhcCHhHHHHHHHhhh
Q 024043 227 DEEDIAKFTDVVKEFD 242 (273)
Q Consensus 227 ~~~d~~~~~~~~~~~~ 242 (273)
..||...|.+++..+.
T Consensus 91 r~Gdl~~f~~~l~~~~ 106 (203)
T 3t5x_A 91 SEGNLLLLHEALAKHE 106 (203)
T ss_dssp HHTCHHHHHHHHHHTH
T ss_pred HhCCHHHHHHHHHHhH
Confidence 9999999999998865
No 241
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.83 E-value=1.3 Score=34.09 Aligned_cols=43 Identities=14% Similarity=0.052 Sum_probs=30.7
Q ss_pred cCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 024043 125 EHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEI 178 (273)
Q Consensus 125 ~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~ 178 (273)
.|+++.|.+..++. + ....|.++|......|+++-|.++|+++
T Consensus 18 lg~l~~A~e~a~~l-------~----~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 18 YGNLDAALDEAKKL-------N----DSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp TTCHHHHHHHHHHH-------C----CHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHh-------C----CHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 37777777765432 1 1356888888888888888888888876
No 242
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=93.39 E-value=0.33 Score=44.00 Aligned_cols=62 Identities=13% Similarity=0.158 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 024043 112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIA 179 (273)
Q Consensus 112 a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~ 179 (273)
-+++..+|.+......++.|..+|.+|+.+.+..| ..++.+|.+....|+.-+|+-+|.+++
T Consensus 152 hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G------~~~nqLavla~~~~~~l~a~y~y~rsl 213 (497)
T 1ya0_A 152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNG------QPYNQLAILASSKGDHLTTIFYYCRSI 213 (497)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBS------HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCC------chHHHHHHHHhcccccHHHHHHHHHHH
Confidence 45888999999999999999999999999998877 458899999999999999999998875
No 243
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.06 E-value=0.95 Score=33.56 Aligned_cols=73 Identities=8% Similarity=0.078 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043 109 SMAARYYKEIAELYESEHNI---EQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN 185 (273)
Q Consensus 109 ~~~a~~l~~lg~~~~~~g~~---~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~ 185 (273)
.-...+..+.|.++....+. .+++.+++.-+. . .+....+|+..+|.-+.++|+|++|..+.+..+...+++
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~---~--~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYK---E--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHH---H--CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh---c--CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 34566778888888877544 467777766444 2 233556899999999999999999999999998887776
Q ss_pred c
Q 024043 186 N 186 (273)
Q Consensus 186 ~ 186 (273)
.
T Consensus 111 ~ 111 (144)
T 1y8m_A 111 K 111 (144)
T ss_dssp H
T ss_pred H
Confidence 4
No 244
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.99 E-value=2.3 Score=37.04 Aligned_cols=93 Identities=10% Similarity=-0.035 Sum_probs=64.7
Q ss_pred cCCHHHHHHHHHHHHHHHhcc---C--CcccH-----------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchh
Q 024043 125 EHNIEQTIVFFEKAADMFQNE---E--VTTSA-----------NQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLL 188 (273)
Q Consensus 125 ~g~~~~A~~~y~~Al~~~~~~---~--~~~~~-----------~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~ 188 (273)
.|+++.|+..+.+|+++++.. + ...+. ..++..++..+...|++.+|+..+++.+...+-+.
T Consensus 128 ~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E-- 205 (388)
T 2ff4_A 128 AGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYRE-- 205 (388)
T ss_dssp TTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH--
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--
Confidence 478888888888888887642 1 11111 13455666777889999999999988865433221
Q ss_pred hhchhhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 024043 189 KYGVKGHLLNAGICQLCKGDVVAITNALERYQDIAA 224 (273)
Q Consensus 189 ~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~ll~ 224 (273)
..+..+..++...|+...|.+.|+++...+.
T Consensus 206 -----~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~ 236 (388)
T 2ff4_A 206 -----PLWTQLITAYYLSDRQSDALGAYRRVKTTLA 236 (388)
T ss_dssp -----HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 1334556778899999999999999886543
No 245
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=92.88 E-value=1.3 Score=32.37 Aligned_cols=71 Identities=8% Similarity=0.049 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccc
Q 024043 111 AARYYKEIAELYESEHN---IEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNN 186 (273)
Q Consensus 111 ~a~~l~~lg~~~~~~g~---~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~ 186 (273)
...+..+.|.++....+ ..+++..++..+. .. +....+|+.-+|.-+.++|+|++|..+.+.++...+++.
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~---~~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYK---EA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH---HC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHh---cC--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 34567777777777644 4467777765443 22 345679999999999999999999999999987777764
No 246
>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane, phosphoprotein, nucleotide-binding, alternative splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*
Probab=92.31 E-value=1.7 Score=38.49 Aligned_cols=95 Identities=12% Similarity=0.094 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----c-----C----------------------------CHHHH
Q 024043 30 EDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLK----L-----E----------------------------SKHEA 72 (273)
Q Consensus 30 ~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~----~-----~----------------------------~~~~a 72 (273)
+-=..++.+.+..+...++|.+|+-|+..++.+.-+ . + ...+.
T Consensus 8 dl~~~wl~~La~~h~~~~n~~EAa~cl~~~aaliae~L~~~~~~~~~~~~f~~i~p~~~ee~~~~~d~g~~~~~fte~~l 87 (428)
T 2wm9_A 8 ELRKTWLDSMARIHVKNGDLSEAAMCYVHVTALVAEYLTRKGVFRQGCTAFRVITPNIDEEASMMEDVGMQDVHFNEDVL 87 (428)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHTTSSSCCGGGGTTTCGGGGGGC---------CCSSSHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHhhcCCCccchhccccccCCCccccCHHHH
Confidence 344567778889999999999999998866654322 0 0 11122
Q ss_pred HHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHh
Q 024043 73 AQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYES 124 (273)
Q Consensus 73 a~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~ 124 (273)
...+..+...+.+. .++.|+..|+..+.+|....|+...+.++..++.+|..
T Consensus 88 ~~ll~~ai~~f~kg~~~E~ai~~~k~L~~~ye~~~dy~~Ls~~~~~~a~~y~~ 140 (428)
T 2wm9_A 88 MELLEQCADGLWKAERYELIADIYKLIIPIYEKRRDFERLAHLYDTLHRAYSK 140 (428)
T ss_dssp HHHHHHHHHHHHHTTCGGGHHHHHTTTHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 23455566666655 67777777777777777777777777777777666654
No 247
>2yin_A DOCK2, dedicator of cytokinesis protein 2; apoptosis, DOCK, DOCK guanine nucleotide exchange factors; 2.70A {Homo sapiens} PDB: 3b13_A
Probab=92.20 E-value=4.4 Score=35.92 Aligned_cols=128 Identities=16% Similarity=0.093 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCChhHHHHH
Q 024043 35 LFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARY 114 (273)
Q Consensus 35 ~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~eA~~~~~~Al~~~~~~g~~~~~a~~ 114 (273)
+.-+..+.|+..++.+-=+.+..+.++.+.+.+|..+||.++...+.++.-.+ ..-+...... ..+...-.+......
T Consensus 17 ~~~~l~~~y~~~~~~el~i~~l~~L~~~h~~~~ny~EAa~~l~lhA~l~~w~~-~~~~~~~~~~-~~~~~qt~~~~ke~L 94 (436)
T 2yin_A 17 CTVNLLNFYKDNNREEMYIRYLYKLRDLHLDCDNYTEAAYTLLLHTWLLKWSD-EQCASQVMQT-GQQHPQTHRQLKETL 94 (436)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSC-CC---------------CHHHHHHHH
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHhCCCc-cccCcccccC-CCCccccHHHHHHHH
Confidence 44566778888888888888888888888888888888888866665543221 1101100000 001111111222345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc-CCcccHHHHHHHHHHHHHH
Q 024043 115 YKEIAELYESEHNIEQTIVFFEKAADMFQNE-EVTTSANQCKQKVAQYAAE 164 (273)
Q Consensus 115 l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~-~~~~~~~~~~~~~a~~~~~ 164 (273)
+..+...+..-+.++.|+..|+..+..|+.. .+....+.++..++.+|..
T Consensus 95 ~~~~i~~f~kg~~~E~ai~l~k~L~~~yE~~~~Dy~~Ls~~~~~~a~~y~~ 145 (436)
T 2yin_A 95 YETIIGYFDKGKMWEEAISLCKELAEQYEMEIFDYELLSQNLIQQAKFYES 145 (436)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777788888899998888888875 6656666777777766653
No 248
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.17 E-value=3.6 Score=39.14 Aligned_cols=58 Identities=9% Similarity=0.099 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 024043 114 YYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEE 177 (273)
Q Consensus 114 ~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~ 177 (273)
.|..=+.-+...|+|+-|+++.++|+.+.. +...+|..++.+|+.+|+|+.|+-.+.-
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aP------seF~tW~~La~vYi~l~d~e~ALLtLNS 396 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELAL------DSFESWYNLARCHIKKEEYEKALFAINS 396 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCS------SCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCc------hhhHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 444445555566999999999999999864 4578999999999999999999975544
No 249
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=92.14 E-value=3.2 Score=31.93 Aligned_cols=95 Identities=5% Similarity=0.036 Sum_probs=55.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHH
Q 024043 95 LEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEI 174 (273)
Q Consensus 95 ~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~ 174 (273)
++.|.++....++ ...|..+|..-...|+++-|.++|.++-++ ..+-.+|.-.|+-++=..+
T Consensus 21 l~~A~e~a~~l~~----~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~--------------~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 21 LDAALDEAKKLND----SITWERLIQEALAQGNASLAEMIYQTQHSF--------------DKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHHHHHHHHCC----HHHHHHHHHHHHHTTCHHHHHHHHHHTTCH--------------HHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHhCC----HHHHHHHHHHHHHcCChHHHHHHHHHhCCH--------------HHHHHHHHHhCCHHHHHHH
Confidence 3444444444333 447999999999999999999999764333 2334455556665443333
Q ss_pred HHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 024043 175 YEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERY 219 (273)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~ 219 (273)
-+.+. ..+ .+..+..+++..||++++.+.+.+.
T Consensus 83 a~iA~--~~g----------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 83 QNIAQ--TRE----------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHH--HTT----------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHH--HCc----------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 22221 111 1233456677778887777776653
No 250
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=92.13 E-value=0.31 Score=44.12 Aligned_cols=62 Identities=18% Similarity=0.256 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 024043 74 QAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADM 141 (273)
Q Consensus 74 ~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~ 141 (273)
+++..+|++.+-. .+..|..+|.+|+.+.+..|. .++.+|.+....|+.-+|+=+|.+++..
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~------~~nqLavla~~~~~~l~a~y~y~rsl~~ 215 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQ------PYNQLAILASSKGDHLTTIFYYCRSIAV 215 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSH------HHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCc------hHHHHHHHHhcccccHHHHHHHHHHHhc
Confidence 4677899998766 899999999999999999997 8999999999999999999999998753
No 251
>2r17_C Vacuolar protein sorting-associated protein 35; protein transport, membrane, phosphorylation; 2.80A {Homo sapiens}
Probab=92.10 E-value=4.7 Score=33.74 Aligned_cols=120 Identities=13% Similarity=-0.030 Sum_probs=87.6
Q ss_pred CCHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHhcc---CHHHHHHHHHHHH
Q 024043 27 SKYEDAADLFDKAANSFKLAKS---WDKAGATYVKLANCHLK-LESKHEAAQAYVDAAHCYKKT---SSNEAISCLEQAV 99 (273)
Q Consensus 27 ~~~~~A~~~~~~a~~~~~~~~~---~~~A~~~~~~a~~~~~~-~~~~~~aa~~~~~~~~~~~~~---~~~eA~~~~~~Al 99 (273)
+..+.+..+|-+++.+-...+- -+-|-++|.+|..+|++ ..+...+..+...+....... ..+.-...-.++.
T Consensus 93 ~~~elalrL~Lq~A~~ad~~~~~~~e~iaYEFf~qAf~iYEe~IsdSk~Q~~al~~ii~tL~~~~~f~~enye~L~tk~t 172 (298)
T 2r17_C 93 ELAELPLRLFLQGALAAGEIGFENHETVAYEFMSQAFSLYEDEISDSKAQLAAITLIIGTFERMKCFSEENHEPLRTQCA 172 (298)
T ss_dssp TCCHHHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHccCCCHhhHHHHHHHHH
Confidence 3457788888888877777766 67778899999999986 777777777777666666555 4444444445555
Q ss_pred HHHHhcCChhHHHHHHHHHHHHHHh----------cCCHHHHHHHHHHHHHHHhccC
Q 024043 100 NMFCDIGRLSMAARYYKEIAELYES----------EHNIEQTIVFFEKAADMFQNEE 146 (273)
Q Consensus 100 ~~~~~~g~~~~~a~~l~~lg~~~~~----------~g~~~~A~~~y~~Al~~~~~~~ 146 (273)
....+.=+...++++....+.+++. ..+.+..++|++||+.+....-
T Consensus 173 ~~askLLKK~dQcraV~~cshLfW~~~~~~~~~~~~rd~krVleCLqkaLkiA~~~~ 229 (298)
T 2r17_C 173 LAASKLLKKPDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQCM 229 (298)
T ss_dssp HHHHTCSSHHHHHHHHHHTHHHHHTCBCTTTTTCBCCCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHHhcCCCccccchhhccchHHHHHHHHHHHHHHHHHh
Confidence 5555666667778888888998874 1478899999999999887653
No 252
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=92.07 E-value=1.8 Score=31.69 Aligned_cols=63 Identities=11% Similarity=0.009 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043 152 NQCKQKVAQYAAELEQ---YHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ 220 (273)
Q Consensus 152 ~~~~~~~a~~~~~~g~---y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~ 220 (273)
..+..++|+++++..+ ..++|.+++......+ ...+++++.+++.+...||+..|+++.+...
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~------~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL 105 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAE------SRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 105 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCG------GGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCc------chhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4789999999998764 4689999988765332 1356788888999999999999999998864
No 253
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=91.65 E-value=3.3 Score=31.08 Aligned_cols=49 Identities=16% Similarity=0.183 Sum_probs=24.1
Q ss_pred CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 024043 87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADM 141 (273)
Q Consensus 87 ~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~ 141 (273)
|+++|.+.|+.|+.+ ...+ |+++..-|+--..+|+.+.|...+.+|+.+
T Consensus 75 D~d~aR~vy~~a~~~---hKkF---AKiwi~~AqFEiRqgnl~kARkILg~AiG~ 123 (161)
T 4h7y_A 75 EPDDARDYFQMARAN---CKKF---AFVHISFAQFELSQGNVKKSKQLLQKAVER 123 (161)
T ss_dssp CGGGCHHHHHHHHHH---CTTB---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHH---hHHH---HHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Confidence 555555555555544 2222 455555555444445555555555555543
No 254
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=91.22 E-value=3.2 Score=37.07 Aligned_cols=130 Identities=9% Similarity=-0.009 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc---cC--CcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-Hhccc
Q 024043 113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQN---EE--VTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQ-SLNNN 186 (273)
Q Consensus 113 ~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~---~~--~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~-~~~~~ 186 (273)
-..+++-.+|.+.+++.-+...+ ++++-... .. ........+.-+|.++.-.++|.+|-+.+..+... ++.+.
T Consensus 177 ~l~n~L~kiYFkl~~~~lckni~-k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~~ 255 (455)
T 3t5v_B 177 YLVNKLNNIYFRIESPQLCSNIF-KNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLPL 255 (455)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHH-HTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHH-HHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCccc
Confidence 34456667788888877766655 44433211 11 12344566788999999999999999999999877 66431
Q ss_pred h---hhhchhhHHHHHHHHHHhcCCHHHH----H---HHHHH-HHHHHHHHhhcCHhHHHHHHHhhhc
Q 024043 187 L---LKYGVKGHLLNAGICQLCKGDVVAI----T---NALER-YQDIAASMDEEDIAKFTDVVKEFDS 243 (273)
Q Consensus 187 ~---~~~~~~~~~~~~gl~~l~~gd~~~A----~---~~~~~-~~~ll~a~~~~d~~~~~~~~~~~~~ 243 (273)
. .......++.-+..+.+..|+...- + ..+.. |..++.|+..||...|.+++..+..
T Consensus 256 ~~~~~~~n~~~ILkyLIpv~LLlG~~P~~~ll~k~~~~~L~~~y~~L~~AVr~Gdl~~F~~~L~~~~~ 323 (455)
T 3t5v_B 256 TNQAITRNGTRILNYMIPTGLILGKMVKWGPLRPFLSQETIDNWSVLYKHVRYGNIQGVSLWLRQNER 323 (455)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTCCBCHHHHGGGSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred cchhhhhHHHHHHHHHHHHHHHcCCCCCHHHHcccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHhHH
Confidence 0 0111122333345566777864221 1 23544 8899999999999999999998764
No 255
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.84 E-value=2.3 Score=37.18 Aligned_cols=155 Identities=10% Similarity=0.097 Sum_probs=91.2
Q ss_pred CHHHHHHHHHHHHHHHHhc-----------CChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCc--ccHHH
Q 024043 87 SSNEAISCLEQAVNMFCDI-----------GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVT--TSANQ 153 (273)
Q Consensus 87 ~~~eA~~~~~~Al~~~~~~-----------g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~--~~~~~ 153 (273)
++.+|++++.+........ ........+...++..|...|+.++|..+.+++-......++. ...+.
T Consensus 91 d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~~~ 170 (393)
T 4b4t_O 91 DFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNS 170 (393)
T ss_dssp CHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCccHHHHHH
Confidence 7888888887653322211 1123344566788888888899999999999999888776543 23345
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHh-ccchhhhchhhHHHHHHHHHHhcCCHHHHHHH--------------HHH
Q 024043 154 CKQKVAQYAAELEQYHKSIEIYEEIARQSL-NNNLLKYGVKGHLLNAGICQLCKGDVVAITNA--------------LER 218 (273)
Q Consensus 154 ~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~--------------~~~ 218 (273)
.+...+..+...++|..+....-....... ....+........+.++.+-+...+.....+. +..
T Consensus 171 ~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~~~~~~~~~~~~~~a~~l~~~all~~~i~~f~eLL~~p~i~~L~~~~~~~~ 250 (393)
T 4b4t_O 171 FYSTNSQYFKFKNDFNSFYYTSLLYLSTLEPSTSITLAERQQLAYDLSISALLGDKIYNFGELLHHPIMETIVNDSNYDW 250 (393)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSSCSHHHHHHHHHHHHHHHHHCCSSCSTHHHHHSCCTTSSCSSSSTTH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhccccccCCHHHHHHHHHHHHHHHHcCCCCCChHHHhCChHHHHhhcCCchHH
Confidence 556667777788898887776666543221 11111111112223444443332211111111 112
Q ss_pred HHHHHHHHhhcCHhHHHHHHHhh
Q 024043 219 YQDIAASMDEEDIAKFTDVVKEF 241 (273)
Q Consensus 219 ~~~ll~a~~~~d~~~~~~~~~~~ 241 (273)
+.+++.++..|+...|...+..+
T Consensus 251 l~~Ll~~f~~g~~~~f~~~~~~~ 273 (393)
T 4b4t_O 251 LFQLLNALTVGDFDKFDSLIKVQ 273 (393)
T ss_dssp HHHHHHHHHHTCHHHHHHHCCHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHh
Confidence 34788999999999998876544
No 256
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.78 E-value=1 Score=39.22 Aligned_cols=60 Identities=8% Similarity=-0.057 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 024043 114 YYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIA 179 (273)
Q Consensus 114 ~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~ 179 (273)
++..++..+...|++.+++..+.+++....-. -..+..+-.++...|+..+|++.|++.-
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~------E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYR------EPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55567777888899999999999988775422 2457777788999999999999999874
No 257
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=90.58 E-value=0.69 Score=33.57 Aligned_cols=81 Identities=6% Similarity=-0.017 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHH---HHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHh
Q 024043 129 EQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHK---SIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLC 205 (273)
Q Consensus 129 ~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~---A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~ 205 (273)
..+...|.+++.. +. ....+..++|+++++..+... +|.+++...... .+ ...+++++.+++.+..
T Consensus 18 ~~~~~~y~~e~~~----~~--~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~--~p---~~~Rd~lY~LAvg~yk 86 (126)
T 1nzn_A 18 LKFEKKFQSEKAA----GS--VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG--SK---EEQRDYVFYLAVGNYR 86 (126)
T ss_dssp HHHHHHHHHHHHH----SC--CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS--CH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc----CC--CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--Cc---chHHHHHHHHHHHHHH
Confidence 3444555555432 22 224788999999999876655 999999876421 11 1356788889999999
Q ss_pred cCCHHHHHHHHHHHH
Q 024043 206 KGDVVAITNALERYQ 220 (273)
Q Consensus 206 ~gd~~~A~~~~~~~~ 220 (273)
.||+..|+++++...
T Consensus 87 lg~Y~~A~~~~~~lL 101 (126)
T 1nzn_A 87 LKEYEKALKYVRGLL 101 (126)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHH
Confidence 999999999998864
No 258
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.34 E-value=2.7 Score=42.02 Aligned_cols=128 Identities=8% Similarity=-0.029 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC----CH-------------HHHHHHHHHHHHHHhcc-CHHHHHHHHH
Q 024043 35 LFDKAANSFKLAKSWDKAGATYVKLANCHLKLE----SK-------------HEAAQAYVDAAHCYKKT-SSNEAISCLE 96 (273)
Q Consensus 35 ~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~-------------~~aa~~~~~~~~~~~~~-~~~eA~~~~~ 96 (273)
.|. .|.+|-..|++++|.++|.+|+....... .. .....-|..+..++.+. .++.++++.+
T Consensus 845 ~yl-~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~ 923 (1139)
T 4fhn_B 845 VYL-KALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSL 923 (1139)
T ss_dssp HHH-HHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHH-HHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 354 38899999999999999999864331110 00 11224566677777665 7888888888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHH
Q 024043 97 QAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKS 171 (273)
Q Consensus 97 ~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A 171 (273)
.|++.. ..++.......|.++=..+...|+|++|......- ... .....|+.++-..+++.|..++=
T Consensus 924 lAi~~~-~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~----pd~---~~r~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 924 LADASK-ETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL----STT---PLKKSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp HHHHHC-CSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH----HHS---SSCHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHhc-cCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC----CCH---HHHHHHHHHHHHHHHhCCChhhh
Confidence 888753 33555555667888888888889999887665322 111 12247788887777776665443
No 259
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=90.13 E-value=3.2 Score=30.69 Aligned_cols=63 Identities=11% Similarity=0.024 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043 152 NQCKQKVAQYAAELEQ---YHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ 220 (273)
Q Consensus 152 ~~~~~~~a~~~~~~g~---y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~ 220 (273)
.++.+++|+++++..+ ..+++.+++......+. ..+++++.+.+.+...||+..|+++.+...
T Consensus 39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~------~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL 104 (144)
T 1y8m_A 39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAES------RRRECLYYLTIGCYKLGEYSMAKRYVDTLF 104 (144)
T ss_dssp HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCS------THHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcc------chhHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 5788999999998764 46899999988653221 356788888999999999999999998864
No 260
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=90.00 E-value=0.81 Score=30.98 Aligned_cols=39 Identities=15% Similarity=0.056 Sum_probs=31.4
Q ss_pred ChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 024043 107 RLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE 145 (273)
Q Consensus 107 ~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~ 145 (273)
.+...|..+...++.+...|+|++||++.++|+.+..+.
T Consensus 10 spLn~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~eA 48 (97)
T 2crb_A 10 GPLNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEA 48 (97)
T ss_dssp THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 345567788888888888899999999999998877643
No 261
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=88.74 E-value=1 Score=30.04 Aligned_cols=30 Identities=27% Similarity=0.344 Sum_probs=21.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 024043 115 YKEIAELYESEHNIEQTIVFFEKAADMFQN 144 (273)
Q Consensus 115 l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~ 144 (273)
+..-|.-....|+|++|+.+|.+|++.+..
T Consensus 22 lv~~Ave~D~~g~y~eAl~lY~~aie~l~~ 51 (83)
T 2w2u_A 22 YAINAVKADKEGNAEEAITNYKKAIEVLAQ 51 (83)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 333445556679999999999999988753
No 262
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.61 E-value=1.6 Score=39.54 Aligned_cols=142 Identities=9% Similarity=0.107 Sum_probs=89.3
Q ss_pred CHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhc-CChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 024043 68 SKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI-GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE 145 (273)
Q Consensus 68 ~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~-g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~ 145 (273)
|..+.+..++.+...|... .+++|..+..++. +... ....+.++.+.-+|.++.-.++|.+|.+++..|+......
T Consensus 226 D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 226 DNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp SSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred CcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 4567888888888999877 8999999988885 4433 4556678999999999999999999999999999766543
Q ss_pred CCc-ccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 024043 146 EVT-TSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDI 222 (273)
Q Consensus 146 ~~~-~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~l 222 (273)
... ...-.++..+-.+-.-+|++++ ...|.+- . .+. .-..|+.+..+ ...||.......++.+...
T Consensus 304 ~~a~gfr~~a~K~lI~V~LLlG~iP~-r~lf~q~-----~---l~~-~L~pY~~Lv~A-vr~GdL~~F~~~L~~h~~~ 370 (523)
T 4b4t_S 304 SKSLGFLQQSNKLHCCIQLLMGDIPE-LSFFHQS-----N---MQK-SLLPYYHLTKA-VKLGDLKKFTSTITKYKQL 370 (523)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHTCCCC-HHHHTTT-----S---CHH-HHHHHHHHHHH-HHHTCHHHHHHHHHHTHHH
T ss_pred hhhhhHHHHHHHHHHhHHhhcCCCCC-hHHhhch-----h---HHH-HHHHHHHHHHH-HHcCCHHHHHHHHHHhcce
Confidence 321 1222333333444444676543 1112110 0 000 00112222222 3568888887777776633
No 263
>2yin_A DOCK2, dedicator of cytokinesis protein 2; apoptosis, DOCK, DOCK guanine nucleotide exchange factors; 2.70A {Homo sapiens} PDB: 3b13_A
Probab=88.27 E-value=4.4 Score=35.90 Aligned_cols=98 Identities=14% Similarity=0.052 Sum_probs=73.7
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC----------------HH-HHHHHHHHHHHHHhcc-CH
Q 024043 27 SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLES----------------KH-EAAQAYVDAAHCYKKT-SS 88 (273)
Q Consensus 27 ~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~----------------~~-~aa~~~~~~~~~~~~~-~~ 88 (273)
+..+--+.+..+.+..+...++|.+|+-|+...++++.=..+ .. ..-..|..+...+.++ .+
T Consensus 29 ~~~el~i~~l~~L~~~h~~~~ny~EAa~~l~lhA~l~~w~~~~~~~~~~~~~~~~~qt~~~~ke~L~~~~i~~f~kg~~~ 108 (436)
T 2yin_A 29 NREEMYIRYLYKLRDLHLDCDNYTEAAYTLLLHTWLLKWSDEQCASQVMQTGQQHPQTHRQLKETLYETIIGYFDKGKMW 108 (436)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSCCC--------------CHHHHHHHHHHHHHHHHHHHTCH
T ss_pred CChHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHhCCCccccCcccccCCCCccccHHHHHHHHHHHHHHHHHhcCcH
Confidence 566778888899999999999999999999766655421000 00 1112466667777666 88
Q ss_pred HHHHHHHHHHHHHHHhc-CChhHHHHHHHHHHHHHHh
Q 024043 89 NEAISCLEQAVNMFCDI-GRLSMAARYYKEIAELYES 124 (273)
Q Consensus 89 ~eA~~~~~~Al~~~~~~-g~~~~~a~~l~~lg~~~~~ 124 (273)
+.|+.+|+..+..|... -|+...+.++..++.+|..
T Consensus 109 E~ai~l~k~L~~~yE~~~~Dy~~Ls~~~~~~a~~y~~ 145 (436)
T 2yin_A 109 EEAISLCKELAEQYEMEIFDYELLSQNLIQQAKFYES 145 (436)
T ss_dssp HHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999875 8899999999999888875
No 264
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=87.94 E-value=1.4 Score=29.44 Aligned_cols=34 Identities=9% Similarity=0.006 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 024043 111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQN 144 (273)
Q Consensus 111 ~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~ 144 (273)
.|..+...|.-....|+|++|+.+|..|++++..
T Consensus 12 ~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~ 45 (85)
T 2v6x_A 12 KGIELVQKAIDLDTATQYEEAYTAYYNGLDYLML 45 (85)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 3444444455556668999999999999888753
No 265
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=87.48 E-value=1.4 Score=29.40 Aligned_cols=29 Identities=21% Similarity=0.430 Sum_probs=21.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 024043 116 KEIAELYESEHNIEQTIVFFEKAADMFQN 144 (273)
Q Consensus 116 ~~lg~~~~~~g~~~~A~~~y~~Al~~~~~ 144 (273)
..-|.-....|+|.+|+.+|.+|++.+..
T Consensus 15 v~~Ave~D~~g~y~eAl~lY~~aie~l~~ 43 (83)
T 2v6y_A 15 AILAVKADKEGKVEDAITYYKKAIEVLSQ 43 (83)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 33345556669999999999999988754
No 266
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=87.46 E-value=1.4 Score=29.66 Aligned_cols=34 Identities=24% Similarity=0.276 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 024043 111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQN 144 (273)
Q Consensus 111 ~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~ 144 (273)
.|..+..-|.-....|+|++|+.+|..|++++-.
T Consensus 15 ~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~ 48 (86)
T 4a5x_A 15 AAATVLKRAVELDSESRYPQALVCYQEGIDLLLQ 48 (86)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 3444445555556679999999999999988764
No 267
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=87.01 E-value=0.92 Score=32.44 Aligned_cols=31 Identities=16% Similarity=0.259 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 024043 114 YYKEIAELYESEHNIEQTIVFFEKAADMFQN 144 (273)
Q Consensus 114 ~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~ 144 (273)
.+...|.-....|+|++|+.+|..|+++|..
T Consensus 20 ~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~ 50 (117)
T 2cpt_A 20 DLASKAAQEDKAGNYEEALQLYQHAVQYFLH 50 (117)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 3334444445558899999999998888754
No 268
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=86.35 E-value=1.9 Score=29.35 Aligned_cols=33 Identities=21% Similarity=0.269 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 024043 112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQN 144 (273)
Q Consensus 112 a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~ 144 (273)
|..+...|.-....|+|++|+.+|..|++++..
T Consensus 15 Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~ 47 (93)
T 1wfd_A 15 AVAVLKRAVELDAESRYQQALVCYQEGIDMLLQ 47 (93)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 344444555556679999999999999998864
No 269
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=84.39 E-value=4.3 Score=40.57 Aligned_cols=100 Identities=11% Similarity=0.102 Sum_probs=71.9
Q ss_pred HHHHHHHhcc-CHHHHHHHHHHHHHHH-----------------HhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 024043 77 VDAAHCYKKT-SSNEAISCLEQAVNMF-----------------CDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKA 138 (273)
Q Consensus 77 ~~~~~~~~~~-~~~eA~~~~~~Al~~~-----------------~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~A 138 (273)
.-.|.++... ++++|.++|++|..-. ............|..+..+++..+.++.++++.+.|
T Consensus 846 yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lA 925 (1139)
T 4fhn_B 846 YLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLA 925 (1139)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4567888766 9999999998873211 111112223567889999999999999999999999
Q ss_pred HHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 024043 139 ADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEE 177 (273)
Q Consensus 139 l~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~ 177 (273)
++..... +.......+.++=..+..+|+|++|...+..
T Consensus 926 i~~~~~~-~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~ 963 (1139)
T 4fhn_B 926 DASKETD-DEDLSIAITHETLKTACAAGKFDAAHVALMV 963 (1139)
T ss_dssp HHHCCSC-CHHHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred HHhccCC-ChhhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence 9875433 2222334677777888999999999876643
No 270
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=80.73 E-value=27 Score=34.63 Aligned_cols=102 Identities=9% Similarity=-0.034 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhh
Q 024043 111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKY 190 (273)
Q Consensus 111 ~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~ 190 (273)
.-.+++.+=..|.+.|+.++|...+.+-.++-.. |-... ..+|+.+-..+++.|+.++|.++|++....... .
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~k-G~~Pd-vvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~-----P 198 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQK-RKLLT-LDMYNAVMLGWARQGAFKELVYVLFMVKDAGLT-----P 198 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHH-HTTCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCC-----C
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhc-CCCCC-HhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-----C
Confidence 3446777778888889999999999765544322 11122 357888889999999999999999988533221 1
Q ss_pred chhhHHHHHHHHHHhcCC-HHHHHHHHHHHH
Q 024043 191 GVKGHLLNAGICQLCKGD-VVAITNALERYQ 220 (273)
Q Consensus 191 ~~~~~~~~~gl~~l~~gd-~~~A~~~~~~~~ 220 (273)
.. ..|..+..++...|. .+.|.+.|++..
T Consensus 199 Dv-vTYntLI~glcK~G~~~e~A~~Ll~EM~ 228 (1134)
T 3spa_A 199 DL-LSYAAALQCMGRQDQDAGTIERCLEQMS 228 (1134)
T ss_dssp CH-HHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cH-HHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 11 123334445555665 467788888754
No 271
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=79.41 E-value=4.7 Score=27.29 Aligned_cols=32 Identities=16% Similarity=0.071 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 024043 33 ADLFDKAANSFKLAKSWDKAGATYVKLANCHL 64 (273)
Q Consensus 33 ~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~ 64 (273)
+-.+.+-+..+...|.|++|++|+.+|+....
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa~yL~ 46 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKATTYLS 46 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 34555567777778888888888888886653
No 272
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=78.07 E-value=6.2 Score=26.13 Aligned_cols=34 Identities=18% Similarity=-0.015 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 024043 30 EDAADLFDKAANSFKLAKSWDKAGATYVKLANCHL 64 (273)
Q Consensus 30 ~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~ 64 (273)
+.|+++..+| .-.-..|+|++|+.+|..+++.+.
T Consensus 17 ~~Ai~lv~~A-ve~D~~g~y~eAl~lY~~aie~l~ 50 (83)
T 2w2u_A 17 EMARKYAINA-VKADKEGNAEEAITNYKKAIEVLA 50 (83)
T ss_dssp HHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHhccHHHHHHHHHHHHHHHH
Confidence 4555555543 445667777777777777776654
No 273
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=76.47 E-value=7.3 Score=25.75 Aligned_cols=32 Identities=16% Similarity=-0.101 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 024043 31 DAADLFDKAANSFKLAKSWDKAGATYVKLANCH 63 (273)
Q Consensus 31 ~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~ 63 (273)
.|+++..+| .-.-..|+|++|+.+|..+++.+
T Consensus 10 ~Ai~lv~~A-ve~D~~g~y~eAl~lY~~aie~l 41 (83)
T 2v6y_A 10 MARKYAILA-VKADKEGKVEDAITYYKKAIEVL 41 (83)
T ss_dssp HHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHhccHHHHHHHHHHHHHHH
Confidence 444444443 33455556666666666665554
No 274
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=72.61 E-value=25 Score=33.44 Aligned_cols=85 Identities=9% Similarity=0.121 Sum_probs=58.2
Q ss_pred CHHHHHHHHHHHHHHHh----ccCC-ccc-------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhh
Q 024043 127 NIEQTIVFFEKAADMFQ----NEEV-TTS-------ANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKG 194 (273)
Q Consensus 127 ~~~~A~~~y~~Al~~~~----~~~~-~~~-------~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~ 194 (273)
+--+|+....++++-.. .... ... ....+.-=+..+...|+|+-|+++-+++....+.+ -.
T Consensus 300 ~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPse-------F~ 372 (754)
T 4gns_B 300 KELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDS-------FE 372 (754)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC-------HH
T ss_pred hhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchh-------hH
Confidence 45578888888875321 1111 111 12234444566677899999999999997655543 24
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHH
Q 024043 195 HLLNAGICQLCKGDVVAITNALER 218 (273)
Q Consensus 195 ~~~~~gl~~l~~gd~~~A~~~~~~ 218 (273)
.|..+..||...||++.|.-.++-
T Consensus 373 tW~~La~vYi~l~d~e~ALLtLNS 396 (754)
T 4gns_B 373 SWYNLARCHIKKEEYEKALFAINS 396 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHhc
Confidence 688999999999999999888775
No 275
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=71.87 E-value=10 Score=25.57 Aligned_cols=37 Identities=16% Similarity=0.191 Sum_probs=26.5
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 024043 27 SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHL 64 (273)
Q Consensus 27 ~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~ 64 (273)
+-.+.|+++..+| .-+-..|+|++|+.+|..+++.+.
T Consensus 10 ~~l~~Ai~lv~~A-ve~D~~g~y~eAl~~Y~~Aie~l~ 46 (93)
T 1wfd_A 10 SDSTAAVAVLKRA-VELDAESRYQQALVCYQEGIDMLL 46 (93)
T ss_dssp CHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHhCCHHHHHHHHHHHHHHHH
Confidence 3455666666664 555677888888888888888775
No 276
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=71.84 E-value=32 Score=26.48 Aligned_cols=65 Identities=8% Similarity=-0.007 Sum_probs=47.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH--HHhc----------cCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 024043 115 YKEIAELYESEHNIEQTIVFFEKAAD--MFQN----------EEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIA 179 (273)
Q Consensus 115 l~~lg~~~~~~g~~~~A~~~y~~Al~--~~~~----------~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~ 179 (273)
..--+.||....+|..|+.+.++.++ +-+. .-++....-.+..+|.+..++|+.++|+.+|.+.-
T Consensus 65 ~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf 141 (242)
T 3kae_A 65 KYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSF 141 (242)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhc
Confidence 33446788888999999999999882 2211 11233334567889999999999999999998863
No 277
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=71.26 E-value=9.6 Score=27.04 Aligned_cols=35 Identities=26% Similarity=0.262 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 024043 29 YEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHL 64 (273)
Q Consensus 29 ~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~ 64 (273)
.+.|+.+..+| .-.-..|+|++|+.+|..|++++.
T Consensus 15 l~kAi~lv~~A-ve~D~ag~y~eAl~lY~~Aie~l~ 49 (117)
T 2cpt_A 15 LQKAIDLASKA-AQEDKAGNYEEALQLYQHAVQYFL 49 (117)
T ss_dssp HHHHHHHHHHH-HHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHccCHHHHHHHHHHHHHHHH
Confidence 45666666654 344566778888888887777764
No 278
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=68.56 E-value=12 Score=24.85 Aligned_cols=37 Identities=16% Similarity=0.179 Sum_probs=22.6
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 024043 27 SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHL 64 (273)
Q Consensus 27 ~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~ 64 (273)
|.-..|..+..+| .-....|+|++|+.+|..+++.+.
T Consensus 11 ~~~~~A~~lv~~A-ve~D~~g~y~eAl~lY~~Aie~ll 47 (86)
T 4a5x_A 11 PQSTAAATVLKRA-VELDSESRYPQALVCYQEGIDLLL 47 (86)
T ss_dssp CHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHH
Confidence 3344555555543 444667777777777777777664
No 279
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=66.92 E-value=25 Score=34.41 Aligned_cols=66 Identities=15% Similarity=0.179 Sum_probs=42.0
Q ss_pred HHHHHHhcc-CHHHHHHHHHHHHHHH-----------------HhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043 78 DAAHCYKKT-SSNEAISCLEQAVNMF-----------------CDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAA 139 (273)
Q Consensus 78 ~~~~~~~~~-~~~eA~~~~~~Al~~~-----------------~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al 139 (273)
-.|.+|... ++++|..+|++|..-. ............|.++..+++..+.++.++++.+.|+
T Consensus 845 v~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI 924 (950)
T 4gq2_M 845 LKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLAD 924 (950)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 467777666 8888888888774211 1111111223466777777777777777777777777
Q ss_pred HHHh
Q 024043 140 DMFQ 143 (273)
Q Consensus 140 ~~~~ 143 (273)
....
T Consensus 925 ~~~~ 928 (950)
T 4gq2_M 925 ASKE 928 (950)
T ss_dssp HTCC
T ss_pred hhcc
Confidence 7654
No 280
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.67 E-value=8.5 Score=27.25 Aligned_cols=27 Identities=4% Similarity=0.031 Sum_probs=14.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 024043 117 EIAELYESEHNIEQTIVFFEKAADMFQ 143 (273)
Q Consensus 117 ~lg~~~~~~g~~~~A~~~y~~Al~~~~ 143 (273)
+-|.-..+.|+.++|+++|++.+.-++
T Consensus 27 s~AL~~DE~g~k~~Al~lYk~GI~eLe 53 (116)
T 2dl1_A 27 NKGLNTDELGQKEEAKNYYKQGIGHLL 53 (116)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhcCCHHHHHHHHHHHHHHHH
Confidence 334444444666666666666555544
No 281
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=62.75 E-value=27 Score=22.88 Aligned_cols=35 Identities=17% Similarity=0.260 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 024043 29 YEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHL 64 (273)
Q Consensus 29 ~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~ 64 (273)
.+.|..+..+| .-.-..|+|++|+.+|..+++.+.
T Consensus 10 l~~A~~l~~~A-v~~D~~g~y~eAl~~Y~~aie~l~ 44 (85)
T 2v6x_A 10 LTKGIELVQKA-IDLDTATQYEEAYTAYYNGLDYLM 44 (85)
T ss_dssp HHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHH
Confidence 34555555544 344556777777777777776654
No 282
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=61.72 E-value=31 Score=30.30 Aligned_cols=92 Identities=14% Similarity=0.162 Sum_probs=71.2
Q ss_pred CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHhccCC-cccHHHHHHHHHHHHH
Q 024043 87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHN--IEQTIVFFEKAADMFQNEEV-TTSANQCKQKVAQYAA 163 (273)
Q Consensus 87 ~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~--~~~A~~~y~~Al~~~~~~~~-~~~~~~~~~~~a~~~~ 163 (273)
|-.+-...-++-+-+.-+.|....-..++.++|.+-+..-. ...+++.|.+|+...+..-. .+. ..+.-+|..+.
T Consensus 237 Ds~el~~lQq~LLWlLyd~Ghl~~YPmALgnLgDLEei~pt~grp~~~~Lf~~AI~~ar~~Y~~~hv--YPYtYlgG~~~ 314 (489)
T 4gq4_A 237 DSLELLQLQQKLLWLLYDLGHLERYPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHI--YPYMYLAGYHC 314 (489)
T ss_dssp ECHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCS--HHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhccchhhcchhhhcccCHhhcCCCCCCCCHHHHHHHHHHHHHHhcccCcc--cceeecchHHH
Confidence 45667777778888888888888888889999988876522 23478999999998876532 232 45777889999
Q ss_pred HhcCHHHHHHHHHHHHH
Q 024043 164 ELEQYHKSIEIYEEIAR 180 (273)
Q Consensus 164 ~~g~y~~A~~~~~~~~~ 180 (273)
+.++|.+|+.++-.+..
T Consensus 315 R~~~~~eAl~~wa~aa~ 331 (489)
T 4gq4_A 315 RNRNVREALQAWADTAT 331 (489)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHhhhhhh
Confidence 99999999999988853
No 283
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=60.80 E-value=9.4 Score=24.63 Aligned_cols=30 Identities=10% Similarity=0.134 Sum_probs=25.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 024043 116 KEIAELYESEHNIEQTIVFFEKAADMFQNE 145 (273)
Q Consensus 116 ~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~ 145 (273)
..+|+.+...|++++|+.++-+|+.++.+-
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP 50 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQP 50 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 467888888899999999999999988643
No 284
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=60.56 E-value=34 Score=27.26 Aligned_cols=56 Identities=11% Similarity=0.063 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHHHHHHHh---cCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 024043 87 SSNEAISCLEQAVNMFCD---IGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMF 142 (273)
Q Consensus 87 ~~~eA~~~~~~Al~~~~~---~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~ 142 (273)
+.+.|..+|+.|.++... .-+|-+.+-+++---..|+-++++++|....++|.++.
T Consensus 140 ~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~~ 198 (227)
T 2o8p_A 140 SLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKIL 198 (227)
T ss_dssp CHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 467899999999999864 23455677788777778888899999999999998875
No 285
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=60.17 E-value=41 Score=26.93 Aligned_cols=53 Identities=9% Similarity=-0.018 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHh---cCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 024043 89 NEAISCLEQAVNMFCD---IGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADM 141 (273)
Q Consensus 89 ~eA~~~~~~Al~~~~~---~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~ 141 (273)
+.|..+|++|.++... .-+|.+.+-+++---..|+-++++++|+...++|.+-
T Consensus 147 e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd~ 202 (234)
T 2br9_A 147 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDD 202 (234)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5688888888888753 2356677777777777777789999988888877654
No 286
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=59.50 E-value=1.4e+02 Score=29.62 Aligned_cols=103 Identities=11% Similarity=0.026 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcc
Q 024043 71 EAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTT 149 (273)
Q Consensus 71 ~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~ 149 (273)
..-..|+.+.+.|.+. +.++|.+.+.+-...-.+.-.+. ..+|+.+-..|...|+.++|.+.|.+-. ..|-..
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pd--vvTYNtLI~Glck~G~~~eA~~Lf~eM~----~~G~~P 198 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT--LDMYNAVMLGWARQGAFKELVYVLFMVK----DAGLTP 198 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCC--HHHHHHHHHHHHHHTCHHHHHHHHHHHH----HTTCCC
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCC--HhHHHHHHHHHHhCCCHHHHHHHHHHHH----HcCCCC
Confidence 3444677777777666 88899888876543322111111 3478888888888899999999998753 334333
Q ss_pred cHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHH
Q 024043 150 SANQCKQKVAQYAAELEQ-YHKSIEIYEEIAR 180 (273)
Q Consensus 150 ~~~~~~~~~a~~~~~~g~-y~~A~~~~~~~~~ 180 (273)
.. .+|+.+-..+.+.|+ .++|.+++++...
T Consensus 199 Dv-vTYntLI~glcK~G~~~e~A~~Ll~EM~~ 229 (1134)
T 3spa_A 199 DL-LSYAAALQCMGRQDQDAGTIERCLEQMSQ 229 (1134)
T ss_dssp CH-HHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cH-HHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 33 567777788999997 4788898888753
No 287
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=57.21 E-value=64 Score=24.81 Aligned_cols=64 Identities=17% Similarity=0.182 Sum_probs=46.3
Q ss_pred HHHHHHhcc-CHHHHHHHHHHHHHHHHh------------cCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 024043 78 DAAHCYKKT-SSNEAISCLEQAVNMFCD------------IGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADM 141 (273)
Q Consensus 78 ~~~~~~~~~-~~~eA~~~~~~Al~~~~~------------~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~ 141 (273)
--..||.+. ++..|+.+.+..++--.+ .=|+...--.+..+|.++...|+-++|+.+|......
T Consensus 67 Yk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~ 143 (242)
T 3kae_A 67 YESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK 143 (242)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence 345677777 999999999988721111 1122334456888999999999999999999986554
No 288
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=56.87 E-value=44 Score=32.62 Aligned_cols=65 Identities=9% Similarity=0.036 Sum_probs=45.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhcc-----------------CCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 024043 116 KEIAELYESEHNIEQTIVFFEKAADMFQNE-----------------EVTTSANQCKQKVAQYAAELEQYHKSIEIYEEI 178 (273)
Q Consensus 116 ~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~-----------------~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~ 178 (273)
.-+|.+|...|++++|..+|++|..-.... .........|..+..++...+-|+-++...+.+
T Consensus 844 yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lA 923 (950)
T 4gq2_M 844 YLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLA 923 (950)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 568999999999999999999987433211 111122345677777777777777777777777
Q ss_pred HH
Q 024043 179 AR 180 (273)
Q Consensus 179 ~~ 180 (273)
+.
T Consensus 924 I~ 925 (950)
T 4gq2_M 924 DA 925 (950)
T ss_dssp HH
T ss_pred Hh
Confidence 64
No 289
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=56.36 E-value=10 Score=24.81 Aligned_cols=27 Identities=19% Similarity=0.417 Sum_probs=18.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 024043 117 EIAELYESEHNIEQTIVFFEKAADMFQ 143 (273)
Q Consensus 117 ~lg~~~~~~g~~~~A~~~y~~Al~~~~ 143 (273)
++|.=|...|+|+.|+.+|+.+++...
T Consensus 17 k~ARe~Al~GnYdta~~yY~g~~~qI~ 43 (78)
T 2rpa_A 17 KLAREYALLGNYDSAMVYYQGVLDQMN 43 (78)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 445555555888888888877776654
No 290
>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane, phosphoprotein, nucleotide-binding, alternative splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*
Probab=56.30 E-value=1e+02 Score=26.93 Aligned_cols=35 Identities=23% Similarity=0.183 Sum_probs=27.3
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 024043 47 KSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAH 81 (273)
Q Consensus 47 ~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~ 81 (273)
+.++-=+..+.+.++.+.+.+++.+||.++..++.
T Consensus 5 ~~pdl~~~wl~~La~~h~~~~n~~EAa~cl~~~aa 39 (428)
T 2wm9_A 5 STPELRKTWLDSMARIHVKNGDLSEAAMCYVHVTA 39 (428)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34455567788889999999999999999975554
No 291
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=55.67 E-value=52 Score=26.76 Aligned_cols=53 Identities=9% Similarity=0.006 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHh---cCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 024043 89 NEAISCLEQAVNMFCD---IGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADM 141 (273)
Q Consensus 89 ~eA~~~~~~Al~~~~~---~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~ 141 (273)
+.|..+|+.|.++... .-+|.+.+-+++---..|+-++++++|+...++|.+-
T Consensus 152 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~ 207 (260)
T 1o9d_A 152 ESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE 207 (260)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5788889999888753 2456677777877777788889999998888877644
No 292
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=55.31 E-value=48 Score=27.09 Aligned_cols=53 Identities=17% Similarity=0.093 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHH-hc----CChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 024043 89 NEAISCLEQAVNMFC-DI----GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADM 141 (273)
Q Consensus 89 ~eA~~~~~~Al~~~~-~~----g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~ 141 (273)
+.|..+|++|.++.. .. -+|-+.+-+|+---..|+-++++++|+...++|.+-
T Consensus 169 e~a~~aYq~A~eiA~~~L~~~pThPiRLGLaLNfSVFyYEIln~p~~Ac~lAk~AFde 226 (268)
T 3efz_A 169 KQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRAIQA 226 (268)
T ss_dssp HHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 578899999999885 23 567777878877777777789999999999998876
No 293
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=53.95 E-value=64 Score=23.85 Aligned_cols=28 Identities=7% Similarity=0.020 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 024043 152 NQCKQKVAQYAAELEQYHKSIEIYEEIA 179 (273)
Q Consensus 152 ~~~~~~~a~~~~~~g~y~~A~~~~~~~~ 179 (273)
+..+..+|..|.+.|+-.+|-+++.++-
T Consensus 125 ~~~l~kia~Ay~Klg~~r~a~eLl~~AC 152 (172)
T 1wy6_A 125 ASILVAIANALRRVGDERDATTLLIEAC 152 (172)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 4667788888888888888888877774
No 294
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=53.71 E-value=74 Score=28.50 Aligned_cols=27 Identities=30% Similarity=0.330 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 024043 114 YYKEIAELYESEHNIEQTIVFFEKAADM 141 (273)
Q Consensus 114 ~l~~lg~~~~~~g~~~~A~~~y~~Al~~ 141 (273)
.+.+.|..+.. |..++|-..-.+|-++
T Consensus 490 yy~~AA~k~~y-G~~eqAe~l~~~A~~~ 516 (526)
T 2wb7_A 490 YYVNAARKALN-GDLEQAKIDAEKAKEY 516 (526)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-CccHHHHHHHHHHHHH
Confidence 33333444433 5555555555555444
No 295
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=53.65 E-value=16 Score=24.84 Aligned_cols=29 Identities=10% Similarity=0.145 Sum_probs=24.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 024043 116 KEIAELYESEHNIEQTIVFFEKAADMFQN 144 (273)
Q Consensus 116 ~~lg~~~~~~g~~~~A~~~y~~Al~~~~~ 144 (273)
..+|+.+...|+++.|+.++-+|+.++.+
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 46788888889999999999999988853
No 296
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=53.59 E-value=64 Score=25.85 Aligned_cols=52 Identities=15% Similarity=0.061 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhc---CChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 024043 89 NEAISCLEQAVNMFCDI---GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAAD 140 (273)
Q Consensus 89 ~eA~~~~~~Al~~~~~~---g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~ 140 (273)
+.|..+|++|.++.... -+|-+.+-+++---..|+-++++++|+...++|.+
T Consensus 150 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd 204 (236)
T 3iqu_A 150 DSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFD 204 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
No 297
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=51.57 E-value=72 Score=25.74 Aligned_cols=54 Identities=13% Similarity=0.005 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHh-c--CChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 024043 89 NEAISCLEQAVNMFCD-I--GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMF 142 (273)
Q Consensus 89 ~eA~~~~~~Al~~~~~-~--g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~ 142 (273)
+.|..+|++|.++... . -+|-+.+-+++---..|+-++++++|+...++|.+-.
T Consensus 148 ~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd~A 204 (248)
T 3uzd_A 148 ESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDA 204 (248)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 5688889998887753 2 3677777788777777777899999998888776543
No 298
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=50.78 E-value=1.2e+02 Score=26.13 Aligned_cols=80 Identities=8% Similarity=0.017 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHhcC--HHHHHHHHHHHHHH---HhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Q 024043 152 NQCKQKVAQYAAELEQ--YHKSIEIYEEIARQ---SLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDIAASM 226 (273)
Q Consensus 152 ~~~~~~~a~~~~~~g~--y~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~ll~a~ 226 (273)
..++.++|++-...-. ...++.+|.+++.. .-++. ....+..+|-++...+++.+|.++|.+...+|..+
T Consensus 255 PmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~-----HvYPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~~Y 329 (472)
T 3re2_A 255 PMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDH-----HIYPYTYLGGYYYRKKKYYEAIASWVDAGYVAGKY 329 (472)
T ss_dssp HHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTC-----CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS
T ss_pred chhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccC-----CccchhhhhhhhhhcchHHHHHHHHHHHHHHHHHc
Confidence 3445555555443211 12377788888632 22221 22344556668888999999999999877666554
Q ss_pred h--hcCHhHHHH
Q 024043 227 D--EEDIAKFTD 236 (273)
Q Consensus 227 ~--~~d~~~~~~ 236 (273)
+ ..|.|.+.+
T Consensus 330 NY~reDeEIYKE 341 (472)
T 3re2_A 330 NYSKDDEEMYKE 341 (472)
T ss_dssp CCCGGGHHHHHH
T ss_pred CCCccHHHHHHH
Confidence 3 244444433
No 299
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=50.32 E-value=1.1e+02 Score=26.95 Aligned_cols=88 Identities=14% Similarity=0.156 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHhccC-CcccHHHHHHHHHHHHHH
Q 024043 89 NEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE---HNIEQTIVFFEKAADMFQNEE-VTTSANQCKQKVAQYAAE 164 (273)
Q Consensus 89 ~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~---g~~~~A~~~y~~Al~~~~~~~-~~~~~~~~~~~~a~~~~~ 164 (273)
-|-...-++-+=+.-+.|....=..++.+||.+-+.. |++ .++..|.+|+...+.-- +.+- .-+.-+|..+.+
T Consensus 254 ~el~~LQq~LLWlLyd~GhL~rYPmALgnLgDLEe~~pt~gr~-~~~~L~~~AI~sa~~~Y~n~Hv--YPYtYlgGy~yR 330 (550)
T 3u84_A 254 LELLQLQQKLLWLLYDLGHLERYPMALGNLADLEELEPTPGRP-DPLTLYHKGIASAKTYYRDEHI--YPYMYLAGYHCR 330 (550)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHSCCTTCC-CHHHHHHHHHHHHHHHSTTCCS--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccchhhCchhhcchhhHhhcCCCCCCC-CHHHHHHHHHHHHHHHhccCCc--cceeecchhhhh
Confidence 4555556777777778888777788888888887765 433 48899999998877642 2222 336677889999
Q ss_pred hcCHHHHHHHHHHHH
Q 024043 165 LEQYHKSIEIYEEIA 179 (273)
Q Consensus 165 ~g~y~~A~~~~~~~~ 179 (273)
.++|.+|+..+-.+.
T Consensus 331 ~~~~reAl~~WA~Aa 345 (550)
T 3u84_A 331 NRNVREALQAWADTA 345 (550)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHH
Confidence 999999999988875
No 300
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=49.58 E-value=79 Score=23.63 Aligned_cols=84 Identities=10% Similarity=-0.025 Sum_probs=51.1
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHhccc-hhhhchhhHH-HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhh----c
Q 024043 156 QKVAQYAAELEQYHKSIEIYEEIARQSLNNN-LLKYGVKGHL-LNAGICQLCKGDVVAITNALERYQDIAASMDE----E 229 (273)
Q Consensus 156 ~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~gl~~l~~gd~~~A~~~~~~~~~ll~a~~~----~ 229 (273)
..-+..++..|+|=+|-+.++.+=....+.. ...+-..-+. +-.++.|+..|+...|...+.+....|..+.. =
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~~~~~~~~GI 115 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFRGVPNDYYGV 115 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTSCTTGGGB
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCccCCc
Confidence 3445666777999999999998832221110 0011112223 33466788899999999999998776655432 2
Q ss_pred CHhHHHHHHH
Q 024043 230 DIAKFTDVVK 239 (273)
Q Consensus 230 d~~~~~~~~~ 239 (273)
|++.+...+.
T Consensus 116 Dv~~L~~~~~ 125 (161)
T 2ijq_A 116 DLLDVRTTVT 125 (161)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 4555544443
No 301
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=48.43 E-value=81 Score=25.65 Aligned_cols=53 Identities=15% Similarity=0.070 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHhc--CChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 024043 89 NEAISCLEQAVNMFCDI--GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADM 141 (273)
Q Consensus 89 ~eA~~~~~~Al~~~~~~--g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~ 141 (273)
+.|..+|++|.++.... -+|...+-+++---..|+-++++++|+...++|.+-
T Consensus 173 e~a~~aY~~A~~iA~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~ 227 (260)
T 2npm_A 173 EDALKAYKDATVVAKDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFEM 227 (260)
T ss_dssp HHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45666677777666111 235555666666556666667777777666666543
No 302
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=45.46 E-value=38 Score=24.92 Aligned_cols=33 Identities=24% Similarity=0.468 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 024043 111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQ 143 (273)
Q Consensus 111 ~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~ 143 (273)
.|..+.+.|.+|...|+++.|..+|-+.+.++-
T Consensus 39 ta~~llr~A~~y~~egd~e~AYily~R~~~L~~ 71 (146)
T 2xze_A 39 SGVEIIRMASIYSEEGNIEHAFILYNKYITLFI 71 (146)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 344666778888888999999999999988885
No 303
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=40.50 E-value=1.9e+02 Score=25.45 Aligned_cols=66 Identities=8% Similarity=0.067 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHH---HhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHh--hcCHhHHHHHHHh
Q 024043 170 KSIEIYEEIARQ---SLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDIAASMD--EEDIAKFTDVVKE 240 (273)
Q Consensus 170 ~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~ll~a~~--~~d~~~~~~~~~~ 240 (273)
.++.+|.+++.. .-++. ....|..+|-++...+++.+|.++|.+...+|..++ ..|.|.+.+-+.-
T Consensus 297 ~~~~L~~~AI~sa~~~Y~n~-----HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf~eI 367 (550)
T 3u84_A 297 DPLTLYHKGIASAKTYYRDE-----HIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEFFEV 367 (550)
T ss_dssp CHHHHHHHHHHHHHHHSTTC-----CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccC-----CccceeecchhhhhcchHHHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHH
Confidence 366778777632 22221 223455566688889999999999999888887764 4667777665543
No 304
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=40.35 E-value=1.1e+02 Score=22.82 Aligned_cols=80 Identities=18% Similarity=0.161 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHhcC---ChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCH
Q 024043 92 ISCLEQAVNMFCDIG---RLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQY 168 (273)
Q Consensus 92 ~~~~~~Al~~~~~~g---~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y 168 (273)
...+++++..|.... +-.+--+++...+... +++.+-..+. ...+-....+..|...|.++...|++
T Consensus 43 ~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~---~~p~~if~~L-------~~~~IG~~~AlfY~~wA~~lE~~~~~ 112 (164)
T 2wvi_A 43 STLLERAVEALQGEKRYYSDPRFLNLWLKLGRLC---NEPLDMYSYL-------HNQGIGVSLAQFYISWAEEYEARENF 112 (164)
T ss_dssp HHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC---SCHHHHHHHH-------HHTTSSTTBHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhc---CCHHHHHHHH-------HHCCcchhhHHHHHHHHHHHHHcCCH
Confidence 345556665554332 2222233444444432 4544433332 22233345567889999999999999
Q ss_pred HHHHHHHHHHHHH
Q 024043 169 HKSIEIYEEIARQ 181 (273)
Q Consensus 169 ~~A~~~~~~~~~~ 181 (273)
.+|-++|+..+..
T Consensus 113 ~~A~~Iy~~Gi~~ 125 (164)
T 2wvi_A 113 RKADAIFQEGIQQ 125 (164)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc
Confidence 9999999998753
No 305
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=40.27 E-value=1.8e+02 Score=24.97 Aligned_cols=124 Identities=8% Similarity=0.077 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc-----------CCcccHHHHHHHHH
Q 024043 91 AISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE-----------EVTTSANQCKQKVA 159 (273)
Q Consensus 91 A~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~-----------~~~~~~~~~~~~~a 159 (273)
-++.|..-+.-+...=++-..+..+ ..+.....++++|+++.++........ ........+...++
T Consensus 58 ~~~ly~~fi~~f~~kin~L~lv~~~---~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~ 134 (393)
T 4b4t_O 58 RLRLYDNFVSKFYDKINQLSVVKYL---LASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIA 134 (393)
T ss_dssp CHHHHHHHHHHHHHHSCSHHHHHTT---HHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHH---HHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHH
Confidence 4566666666665544444433332 334455688999999998765443211 01123446678889
Q ss_pred HHHHHhcCHHHHHHHHHHHHHH--HhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHH
Q 024043 160 QYAAELEQYHKSIEIYEEIARQ--SLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALER 218 (273)
Q Consensus 160 ~~~~~~g~y~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~ 218 (273)
.+|...|+.++|..+.+++... ..++.. ..-...++...+..+...+++..+....-.
T Consensus 135 ~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~-~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~ 194 (393)
T 4b4t_O 135 RTYLLKNDLVKARDLLDDLEKTLDKKDSIP-LRITNSFYSTNSQYFKFKNDFNSFYYTSLL 194 (393)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHSCCSS-SHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHhhhccCCcc-HHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 9999999999999999998422 222211 111222333345566677777665544333
No 306
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=40.11 E-value=1.5e+02 Score=24.08 Aligned_cols=52 Identities=12% Similarity=0.107 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHhc---cCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 024043 128 IEQTIVFFEKAADMFQN---EEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIA 179 (273)
Q Consensus 128 ~~~A~~~y~~Al~~~~~---~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~ 179 (273)
.+.|.+.|++|.++... .-+|...+-+++----.|.-++++++|+.+-+++.
T Consensus 172 ~e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AF 226 (261)
T 3ubw_A 172 AENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAF 226 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555555555554431 23444444444444445555555555555544443
No 307
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=39.71 E-value=1.8e+02 Score=25.04 Aligned_cols=90 Identities=11% Similarity=0.110 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHhccC-CcccHHHHHHHHHHHHHHh
Q 024043 89 NEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE--HNIEQTIVFFEKAADMFQNEE-VTTSANQCKQKVAQYAAEL 165 (273)
Q Consensus 89 ~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~--g~~~~A~~~y~~Al~~~~~~~-~~~~~~~~~~~~a~~~~~~ 165 (273)
-+-...-++-+=+.-+.|....=..++.++|.+-+.. .....++..|.+|+...+.-- +.+- .-+.-+|..+.+.
T Consensus 232 ~El~~LQq~LLWLLyD~GhL~rYPmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~Hv--YPYtylgGy~yR~ 309 (472)
T 3re2_A 232 IQLSQLQQELLWLLYDMGHIKTYPMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHHI--YPYTYLGGYYYRK 309 (472)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCS--HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhccchhhCchhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCc--cchhhhhhhhhhc
Confidence 4555666777878888888888888888998887765 222338999999998877642 2222 3366778899999
Q ss_pred cCHHHHHHHHHHHHH
Q 024043 166 EQYHKSIEIYEEIAR 180 (273)
Q Consensus 166 g~y~~A~~~~~~~~~ 180 (273)
++|.+|+..+-.+..
T Consensus 310 ~~~reAl~~WA~Aa~ 324 (472)
T 3re2_A 310 KKYYEAIASWVDAGY 324 (472)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHH
Confidence 999999999988853
No 308
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=39.15 E-value=1.1e+02 Score=22.49 Aligned_cols=116 Identities=13% Similarity=0.088 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCChhHH---HHHHHHHHHHHHhcCCHHHH
Q 024043 55 TYVKLANCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMA---ARYYKEIAELYESEHNIEQT 131 (273)
Q Consensus 55 ~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~eA~~~~~~Al~~~~~~g~~~~~---a~~l~~lg~~~~~~g~~~~A 131 (273)
.|+..+..+ ..+||.+.-.-|..-..-..-.....-...+++++..+........- -+++...+.. ..++.+-
T Consensus 12 ~fE~~i~~y-~gdDPL~~w~~YI~W~e~~~P~g~~~l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~---~~dp~~i 87 (152)
T 4a1g_A 12 MLEAHMQSY-KGNDPLGEWERYIQWVEENFPENKEYLITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEY---NSDLHQF 87 (152)
T ss_dssp HHHHHTTSC-CSSCHHHHHHHHHHHHHTTCSSCTHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTT---BSCHHHH
T ss_pred HHHHHHHhC-CCCCCHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHh---cCCHHHH
Confidence 455544444 34455544444433222111111122456677777777554332222 2233333322 2343332
Q ss_pred HHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 024043 132 IVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQ 181 (273)
Q Consensus 132 ~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~ 181 (273)
..+. ...+-....+..+...|.++...|++.+|-++|+..+..
T Consensus 88 f~~L-------~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 130 (152)
T 4a1g_A 88 FEFL-------YNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN 130 (152)
T ss_dssp HHHH-------HTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHH-------HHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 2222 222333455678899999999999999999999998753
No 309
>1zb1_A BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking, protein transport; 1.95A {Saccharomyces cerevisiae}
Probab=38.83 E-value=1.9e+02 Score=24.83 Aligned_cols=17 Identities=24% Similarity=0.450 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHhccC
Q 024043 130 QTIVFFEKAADMFQNEE 146 (273)
Q Consensus 130 ~A~~~y~~Al~~~~~~~ 146 (273)
++.++|++|.+.....+
T Consensus 217 ~~~~~Y~~a~~~l~~~~ 233 (392)
T 1zb1_A 217 ATCNLFQKCHDFMKEID 233 (392)
T ss_dssp HHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 56678888888887653
No 310
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=38.42 E-value=1.4e+02 Score=26.14 Aligned_cols=71 Identities=11% Similarity=0.079 Sum_probs=46.0
Q ss_pred HHHHHHHHHhcc---CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC
Q 024043 75 AYVDAAHCYKKT---SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEE 146 (273)
Q Consensus 75 ~~~~~~~~~~~~---~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~ 146 (273)
++.++|++-.-. ..+.++..|++|+...+..=+-.. ---|.-+|..+...++|.+|++++-.|..+...-+
T Consensus 264 ALgnLgDLEei~pt~grp~~~~Lf~~AI~~ar~~Y~~~h-vYPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~~Yn 337 (489)
T 4gq4_A 264 ALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEH-IYPYMYLAGYHCRNRNVREALQAWADTATVIQDYN 337 (489)
T ss_dssp HHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCC-SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSC
T ss_pred hhhcccCHhhcCCCCCCCCHHHHHHHHHHHHHHhcccCc-ccceeecchHHHHhhhHHHHHHHhhhhhhhhhhcc
Confidence 344555554332 334577888888887654321111 22455666667777999999999999999987643
No 311
>3rau_A Tyrosine-protein phosphatase non-receptor type 23; BRO1 domain, hydrolase; 1.95A {Homo sapiens}
Probab=37.49 E-value=1.9e+02 Score=24.55 Aligned_cols=37 Identities=19% Similarity=0.194 Sum_probs=26.7
Q ss_pred CHHHHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHHHHH
Q 024043 28 KYEDAADLFDKAANSFKLAK---------SWDKAGATYVKLANCHLK 65 (273)
Q Consensus 28 ~~~~A~~~~~~a~~~~~~~~---------~~~~A~~~~~~a~~~~~~ 65 (273)
.||.|.-+|+-++. |...+ ....|..+|.+|+-++.-
T Consensus 113 ~fE~a~VLfNiaal-~s~~a~~~~r~~~~glK~A~~~fq~AAG~f~~ 158 (363)
T 3rau_A 113 KYEQACILYNLGAL-HSMLGAMDKRVSEEGMKVSCTHFQCAAGAFAY 158 (363)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHSCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHhccCChHHHHHHHHHHHHHHHHHHH
Confidence 78888888887543 33221 367899999999999864
No 312
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=35.52 E-value=2.4e+02 Score=25.23 Aligned_cols=19 Identities=16% Similarity=0.163 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHhccCC
Q 024043 129 EQTIVFFEKAADMFQNEEV 147 (273)
Q Consensus 129 ~~A~~~y~~Al~~~~~~~~ 147 (273)
+.|+++|++|++..+...+
T Consensus 449 ~kAi~~Y~~Ai~~L~k~~~ 467 (526)
T 2wb7_A 449 QGAIDEYKAAINDLQKAAQ 467 (526)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhhhc
Confidence 5677777777777766543
No 313
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.20 E-value=56 Score=23.00 Aligned_cols=13 Identities=31% Similarity=-0.123 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q 024043 50 DKAGATYVKLANC 62 (273)
Q Consensus 50 ~~A~~~~~~a~~~ 62 (273)
++|..+..+|+.+
T Consensus 20 ~~AF~~Is~AL~~ 32 (116)
T 2dl1_A 20 KKAFLFVNKGLNT 32 (116)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhh
Confidence 3444444444443
No 314
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=35.19 E-value=1e+02 Score=20.65 Aligned_cols=66 Identities=14% Similarity=-0.002 Sum_probs=41.5
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Q 024043 158 VAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDIAASM 226 (273)
Q Consensus 158 ~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~ll~a~ 226 (273)
-|..++..|+|=+|-+.++..=....+.. ...-..-+.+..++.|+..|+. |.+.+.+....+..+
T Consensus 7 ~~~~lfn~g~~~eaHEvlE~~W~~~~~~~-~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~~L~~~ 72 (94)
T 2cwy_A 7 EVLGLWRAGRYYEVHEVLEPYWLKATGEE-RRLLQGVILLAAALHQRRLGRP--GLRNLRKAEARLEGL 72 (94)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCHHH-HHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCChHHHHHHHHHHHhhCCCch-HHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHHHHhC
Confidence 34556677999999999998843332211 1111122333446678888988 888888887666544
No 315
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=34.88 E-value=34 Score=22.88 Aligned_cols=16 Identities=19% Similarity=0.393 Sum_probs=7.6
Q ss_pred CCHHHHHHHHHHHHHH
Q 024043 126 HNIEQTIVFFEKAADM 141 (273)
Q Consensus 126 g~~~~A~~~y~~Al~~ 141 (273)
|+.++|+++|++.+.-
T Consensus 33 G~k~~A~~~YkkGi~e 48 (89)
T 3eab_A 33 GQKEQAVEWYKKGIEE 48 (89)
T ss_dssp SSGGGSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 4445555555444433
No 316
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=34.61 E-value=1.8e+02 Score=23.52 Aligned_cols=80 Identities=11% Similarity=0.108 Sum_probs=46.8
Q ss_pred cCChhHHHHHHHHHHHHHHhc-----C-----CHHHHHHHHHHHHHHHhccCC-cccHHHHHHHHHHHHHH-hcCHHHHH
Q 024043 105 IGRLSMAARYYKEIAELYESE-----H-----NIEQTIVFFEKAADMFQNEEV-TTSANQCKQKVAQYAAE-LEQYHKSI 172 (273)
Q Consensus 105 ~g~~~~~a~~l~~lg~~~~~~-----g-----~~~~A~~~y~~Al~~~~~~~~-~~~~~~~~~~~a~~~~~-~g~y~~A~ 172 (273)
..+.....-.+...|..|... | -.+.|.+.|++|.++...... ++-.-....+.+..|.. ++++++|+
T Consensus 139 a~~~EskVFY~KMKGDYyRYlaE~~~g~~r~~~~e~a~~aY~~A~~iA~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac 218 (260)
T 2npm_A 139 ATSPDSKVFYFKMKGDYHRYISEFSTGDSKQSSAEDALKAYKDATVVAKDLEPTHPIRLGLALNFSVFHYEILNEPRAAI 218 (260)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred CCchHHHHHHHHHhccHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 344333344444555555443 1 235788999999999822222 12222334455555544 79999999
Q ss_pred HHHHHHHHHHhc
Q 024043 173 EIYEEIARQSLN 184 (273)
Q Consensus 173 ~~~~~~~~~~~~ 184 (273)
.+-+++....+.
T Consensus 219 ~lAk~Afd~Ai~ 230 (260)
T 2npm_A 219 DMAKEAFEMAIE 230 (260)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 998888655443
No 317
>1col_A Colicin A; antibacterial protein; 2.40A {Escherichia coli} SCOP: f.1.1.1
Probab=32.83 E-value=1.7e+02 Score=22.72 Aligned_cols=56 Identities=5% Similarity=0.055 Sum_probs=44.4
Q ss_pred CHHHHHHHHHHHH-------------HHHHHHhhcCHhHHHHHHHhhhccCCCchhHHH---HHHHHHHhcc
Q 024043 208 DVVAITNALERYQ-------------DIAASMDEEDIAKFTDVVKEFDSMTPLDPWKTT---LLLRVKEKLK 263 (273)
Q Consensus 208 d~~~A~~~~~~~~-------------~ll~a~~~~d~~~~~~~~~~~~~~~~ld~~~~~---~l~~~~~~~~ 263 (273)
.+++|.+.|++|. .|..+++.-|.+.+.+-+..|.+.-.+-.|... +..+.++.++
T Consensus 55 s~~dAl~s~eK~k~nlnkK~n~kDr~AI~~Al~s~d~~~~A~nl~~~sK~f~~~~~~i~~~~v~~~~~~g~e 126 (204)
T 1col_A 55 SFDDAMASLNKITANPAMKINKADRDALVNAWKHVDAQDMANKLGNLSKAFKVADVVMKVEKVREKSIEGYE 126 (204)
T ss_dssp CHHHHHHHHHHHHTSGGGCCCHHHHHHHHHHHHTCCHHHHHHHHHHHCGGGCCTTHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhChhhhcchhhHHHHHHHHHHcCHHHHHHHHHHHHhhhchhHHHhhHHHHHHHHHHHhh
Confidence 5889999999998 688899999999999999999887777666664 5555555543
No 318
>2ymb_A MITD1, MIT domain-containing protein 1; protein transport, membrane, PLD; 3.40A {Homo sapiens}
Probab=32.60 E-value=9.3 Score=31.15 Aligned_cols=34 Identities=21% Similarity=0.234 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 024043 112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE 145 (273)
Q Consensus 112 a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~ 145 (273)
|..+..-|.-+...|+|.+|+.+|.+|++++...
T Consensus 23 Ai~lv~~AVe~D~~g~y~eAl~lY~eaIe~Ll~a 56 (257)
T 2ymb_A 23 AATVLKRAVELDSESRYPQALVCYQEGIDLLLQV 56 (257)
T ss_dssp ----------------------------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 3344445555666799999999999999988654
No 319
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=32.07 E-value=2e+02 Score=23.27 Aligned_cols=29 Identities=17% Similarity=0.088 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 024043 35 LFDKAANSFKLAKSWDKAGATYVKLANCH 63 (273)
Q Consensus 35 ~~~~a~~~~~~~~~~~~A~~~~~~a~~~~ 63 (273)
-+...+.+..+.++|++.+++..+.++..
T Consensus 33 ~lv~~AKLaeqaeRYddMv~~MK~v~~~~ 61 (261)
T 3ubw_A 33 DLVYQAKLAEQAERYDEMVESMKKVAGMD 61 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC
Confidence 34445788888999999999888877653
No 320
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=28.50 E-value=2.2e+02 Score=22.59 Aligned_cols=56 Identities=11% Similarity=0.128 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHhcc-CC-cccHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHh
Q 024043 128 IEQTIVFFEKAADMFQNE-EV-TTSANQCKQKVAQYAA-ELEQYHKSIEIYEEIARQSL 183 (273)
Q Consensus 128 ~~~A~~~y~~Al~~~~~~-~~-~~~~~~~~~~~a~~~~-~~g~y~~A~~~~~~~~~~~~ 183 (273)
.+.|.+.|++|.++.... .. ++-.-....+.+..|. -++++++|+.+-+++....+
T Consensus 146 ~e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd~Ai 204 (234)
T 2br9_A 146 AENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAI 204 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 357889999999998642 21 1222233445555554 47999999998888865433
No 321
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=28.04 E-value=1.7e+02 Score=21.67 Aligned_cols=36 Identities=11% Similarity=0.069 Sum_probs=28.2
Q ss_pred CChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 024043 106 GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADM 141 (273)
Q Consensus 106 g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~ 141 (273)
++..--+..+..+|.+|...|+..+|-+...+|.+-
T Consensus 119 ~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 119 KNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp --CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 444445568889999999999999999999998865
No 322
>1zb1_A BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking, protein transport; 1.95A {Saccharomyces cerevisiae}
Probab=27.89 E-value=2.9e+02 Score=23.63 Aligned_cols=39 Identities=21% Similarity=0.325 Sum_probs=26.6
Q ss_pred CHHHHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHHHHc
Q 024043 28 KYEDAADLFDKAANSFKL-----AKSWDKAGATYVKLANCHLKL 66 (273)
Q Consensus 28 ~~~~A~~~~~~a~~~~~~-----~~~~~~A~~~~~~a~~~~~~~ 66 (273)
.||.|.-+|+-++..... ......|..+|.+|+-++.-+
T Consensus 119 ~fE~a~vLfNlaal~s~~A~~~~r~~lk~A~~~fq~AAG~f~~l 162 (392)
T 1zb1_A 119 AFEKSCTLFNIAVIFTQIARENINEDYKNSIANLTKAFSCFEYL 162 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH
Confidence 678888888864322111 125788999999999988743
No 323
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=27.77 E-value=2.2e+02 Score=22.41 Aligned_cols=123 Identities=11% Similarity=0.108 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcc-CH-HHHHHHHHHHHHHHHhcCChhHH---HHHHHHHHHHH
Q 024043 49 WDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCY-KKT-SS-NEAISCLEQAVNMFCDIGRLSMA---ARYYKEIAELY 122 (273)
Q Consensus 49 ~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~-~~~-~~-~eA~~~~~~Al~~~~~~g~~~~~---a~~l~~lg~~~ 122 (273)
.......|+..+.-+...+||.+.-.-|..-..-. -.. .+ ..-...+++++..|........- -++|...+.
T Consensus 51 l~~~r~~fE~~i~~~~~~dDPL~~w~~YIkW~ee~yP~g~~~~s~L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~-- 128 (223)
T 4aez_C 51 LQKERMGHERKIETSESLDDPLQVWIDYIKWTLDNFPQGETKTSGLVTLLERCTREFVRNPLYKDDVRYLRIWMQYVN-- 128 (223)
T ss_dssp HHHHHHHHHHHHHHGGGSSCTHHHHHHHHHHHHHHCTTCCCTTTCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCcCCCcchhhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHH--
Confidence 34555567766666445667776666665544332 222 21 22457788888887665433322 233333333
Q ss_pred HhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 024043 123 ESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQ 181 (273)
Q Consensus 123 ~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~ 181 (273)
...++.+-..+.. ....| ...+..|...|.++...|+|.+|-++|+..+..
T Consensus 129 -~~~~p~~if~~L~-----~~~IG--~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 179 (223)
T 4aez_C 129 -YIDEPVELFSFLA-----HHHIG--QESSIFYEEYANYFESRGLFQKADEVYQKGKRM 179 (223)
T ss_dssp -TCSCHHHHHHHHH-----HTTCS--TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -ccCCHHHHHHHHH-----HCCcc--hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 1244443333321 12334 455678899999999999999999999998754
No 324
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=26.50 E-value=1.3e+02 Score=22.23 Aligned_cols=38 Identities=11% Similarity=0.216 Sum_probs=32.9
Q ss_pred hcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 024043 104 DIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADM 141 (273)
Q Consensus 104 ~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~ 141 (273)
..|=....|..|..-|..++..|++.+|.+.|+.++.-
T Consensus 93 ~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 130 (152)
T 4a1g_A 93 NHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN 130 (152)
T ss_dssp TTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 45555677889999999999999999999999998875
No 325
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=25.66 E-value=2.7e+02 Score=22.55 Aligned_cols=77 Identities=10% Similarity=0.046 Sum_probs=45.5
Q ss_pred cCChhHHHHHHHHHHHHHHhc-----CC-----HHHHHHHHHHHHHHHhcc-CC-cccHHHHHHHHHHHHH-HhcCHHHH
Q 024043 105 IGRLSMAARYYKEIAELYESE-----HN-----IEQTIVFFEKAADMFQNE-EV-TTSANQCKQKVAQYAA-ELEQYHKS 171 (273)
Q Consensus 105 ~g~~~~~a~~l~~lg~~~~~~-----g~-----~~~A~~~y~~Al~~~~~~-~~-~~~~~~~~~~~a~~~~-~~g~y~~A 171 (273)
..+.....-.+...|..|..+ |+ .+.|...|++|.++.... .. ++-.-....+.+..|. -++++++|
T Consensus 118 a~~~EskVFY~KMKGDYyRYlaE~~~g~~r~~~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~A 197 (260)
T 1o9d_A 118 AASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRA 197 (260)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHH
T ss_pred CCCchhHHHHHHHhccHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHH
Confidence 344333344444555555443 21 357889999999998642 22 1222233445555554 47999999
Q ss_pred HHHHHHHHHH
Q 024043 172 IEIYEEIARQ 181 (273)
Q Consensus 172 ~~~~~~~~~~ 181 (273)
+.+-+++...
T Consensus 198 c~lAk~Afd~ 207 (260)
T 1o9d_A 198 CNLAKQAFDE 207 (260)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9988887543
No 326
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=25.60 E-value=2.1e+02 Score=21.90 Aligned_cols=96 Identities=8% Similarity=0.126 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchh
Q 024043 109 SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLL 188 (273)
Q Consensus 109 ~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~ 188 (273)
...+..+.-+|.++...++|.+|.+++.+|.......+. .....++.-+--+..-+|+++. ...+++- +
T Consensus 11 ~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~-~~k~~IL~yLIp~~Ll~G~iP~-~~ll~~~-----~---- 79 (203)
T 3t5x_A 11 AQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQ-KNKRMILIYLLPVKMLLGHMPT-VELLKKY-----H---- 79 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCH-HHHHHHHHHHHHHHHHTTCEEC-HHHHHHT-----T----
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHH-HHHHHHHHHHHHHHHHcCCCCC-HHHhhhC-----c----
Confidence 455677888999999999999999999999988765432 2223444444444455676532 2222211 1
Q ss_pred hhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043 189 KYGVKGHLLNAGICQLCKGDVVAITNALERYQ 220 (273)
Q Consensus 189 ~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~ 220 (273)
.. .+..+. -....||.....++++++.
T Consensus 80 ---~~-~y~~L~-~Avr~Gdl~~f~~~l~~~~ 106 (203)
T 3t5x_A 80 ---LM-QFAEVT-RAVSEGNLLLLHEALAKHE 106 (203)
T ss_dssp ---CG-GGHHHH-HHHHHTCHHHHHHHHHHTH
T ss_pred ---hh-HHHHHH-HHHHhCCHHHHHHHHHHhH
Confidence 00 122222 2356788888888777765
No 327
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=24.96 E-value=5e+02 Score=25.44 Aligned_cols=43 Identities=9% Similarity=0.206 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 024043 132 IVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIA 179 (273)
Q Consensus 132 ~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~ 179 (273)
.+.++-++++|.....+. |..+..|.+.+++.+.+.++|.+..
T Consensus 215 ~~vLr~l~~Iy~k~~~~d-----y~~a~~~ai~LnD~~li~~if~~l~ 257 (963)
T 4ady_A 215 SSILRKSFDFLMNMPNCD-----YLTLNKVVVNLNDAGLALQLFKKLK 257 (963)
T ss_dssp HHHHHHHHHHHHHSSSCC-----HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchh-----HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456777777777654221 4556677778888888888888764
No 328
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=23.83 E-value=1.9e+02 Score=25.15 Aligned_cols=54 Identities=11% Similarity=0.202 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHhccC--CcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 024043 128 IEQTIVFFEKAADMFQNEE--VTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQ 181 (273)
Q Consensus 128 ~~~A~~~y~~Al~~~~~~~--~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~ 181 (273)
|+.-+.-++.|+....... -+.....++.-+|.++...|+|++|+...++++..
T Consensus 164 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 219 (454)
T 3myv_A 164 YDFIIETLEEAVTLMSEEKNNGRMNKYAARALLARIYLYHDDNRKAFDLADQLIKD 219 (454)
T ss_dssp HHHHHHHHHHHHHHCCCSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccCCeecHHHHHHHHHHHHHhcccHHHHHHHHHHHHhC
Confidence 3445555666666654321 12344567788899999999999999999999753
No 329
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=21.97 E-value=2.3e+02 Score=24.79 Aligned_cols=54 Identities=6% Similarity=0.105 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHhccC--CcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 024043 128 IEQTIVFFEKAADMFQNEE--VTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQ 181 (273)
Q Consensus 128 ~~~A~~~y~~Al~~~~~~~--~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~ 181 (273)
|+.-+.-++.|+....... -+.....++--+|.++...|+|++|+...++++..
T Consensus 170 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allArvyL~~~~~~~A~~~a~~vi~~ 225 (461)
T 3kez_A 170 YTEIISDLKNSTELLSGDFNKGKVNRWAAMTLLSRVYLYKGEYNEALTMAENAIKG 225 (461)
T ss_dssp HHHHHHHHHHHHHHSCCSCCTTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccccCCCeeeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 3445555666766654321 12444567788899999999999999999999753
No 330
>3iqc_A FLIS, flagellar protein; chaperone, flagellum; 2.70A {Helicobacter pylori} SCOP: a.24.19.0 PDB: 3k1i_A
Probab=21.95 E-value=2.2e+02 Score=20.24 Aligned_cols=36 Identities=11% Similarity=0.035 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 024043 30 EDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKL 66 (273)
Q Consensus 30 ~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~ 66 (273)
+.+.....+ +......|++++......+|..+...+
T Consensus 34 dgal~~l~~-A~~ai~~~d~~~k~~~i~KA~~Ii~~L 69 (131)
T 3iqc_A 34 EGILRFSSQ-AKRCIENEDIEKKIYYINRVTDIFTEL 69 (131)
T ss_dssp HHHHHHHHH-HHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 344443333 334445678888888888888777543
No 331
>2a9u_A Ubiquitin carboxyl-terminal hydrolase 8; coil-COIL, protease, SH3-binding, thiol protease, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: a.118.23.1
Probab=21.79 E-value=2.4e+02 Score=20.55 Aligned_cols=40 Identities=15% Similarity=0.119 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcc
Q 024043 110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTT 149 (273)
Q Consensus 110 ~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~ 149 (273)
+.|..+...|.+|...|+.+.|..+|-+-+.++.....++
T Consensus 40 rsa~~L~r~A~~y~~EGd~E~AYilymRy~~L~~kIpkHp 79 (144)
T 2a9u_A 40 HSALKIFKTAEECRLDRDEERAYVLYMKYVTVYNLIKKRP 79 (144)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcCc
Confidence 3455666778999999999999999999999986555443
No 332
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=21.39 E-value=20 Score=31.60 Aligned_cols=25 Identities=16% Similarity=0.356 Sum_probs=0.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHhc
Q 024043 120 ELYESEHNIEQTIVFFEKAADMFQN 144 (273)
Q Consensus 120 ~~~~~~g~~~~A~~~y~~Al~~~~~ 144 (273)
.-+...|+|++|+.+|.+|++++..
T Consensus 19 v~~D~~g~~~eA~~~Y~~a~~~l~~ 43 (444)
T 2zan_A 19 AQEDKAGNYEEALQLYQHAVQYFLH 43 (444)
T ss_dssp -------------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 3344558888888888888887764
No 333
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=20.21 E-value=3.5e+02 Score=21.96 Aligned_cols=53 Identities=13% Similarity=-0.005 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHH-Hc--C--CHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHH
Q 024043 49 WDKAGATYVKLANCHL-KL--E--SKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNM 101 (273)
Q Consensus 49 ~~~A~~~~~~a~~~~~-~~--~--~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~ 101 (273)
-+.|..+|+.|.++.. .+ . +|-..+-+++-....|.-. +|++|+...++|.+-
T Consensus 168 ~e~a~~aYq~A~eiA~~~L~~~pThPiRLGLaLNfSVFyYEIln~p~~Ac~lAk~AFde 226 (268)
T 3efz_A 168 IKQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRAIQA 226 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3678889999999875 45 3 5555666665444444444 999999999988765
Done!