BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024044
(273 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BVO|A Chain A, Crystal Structure Of Human Co-Chaperone Protein Hscb
pdb|3BVO|B Chain B, Crystal Structure Of Human Co-Chaperone Protein Hscb
Length = 207
Score = 110 bits (275), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 114/203 (56%), Gaps = 4/203 (1%)
Query: 74 SESAEKASN-ATCWNCNE--APKAAPFLFCESCRSVQPVDHSVDYFQIFGLGKKYEIGNE 130
S +++ SN CWNC P FC CR++Q D + DYF + + + +
Sbjct: 1 SAASQAGSNYPRCWNCGGPWGPGREDRFFCPQCRALQAPDPTRDYFSLXDCNRSFRVDTA 60
Query: 131 KLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYILRLEGVE 190
KL+ +Y+ Q+ +HPD +S+ E++++ + S V +AY+TL PL+R +Y+L+L G+E
Sbjct: 61 KLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLKLHGIE 120
Query: 191 VNE-DETVSEPELLMEIMEIREAVEDAADSQTLKEIQSQMQEKLIHWGNSFADAYQNRNF 249
+ E + + + L+EI EI E + +A KEI+S ++ K + ++ + A++ +F
Sbjct: 121 IPERTDYEXDRQFLIEIXEINEKLAEAESEAAXKEIESIVKAKQKEFTDNVSSAFEQDDF 180
Query: 250 DEARVCIRRMTYYHRVNEEIAKK 272
+EA+ + + Y+ + E+I K
Sbjct: 181 EEAKEILTKXRYFSNIEEKIKLK 203
>pdb|1FPO|A Chain A, Hsc20 (Hscb), A J-Type Co-Chaperone From E. Coli
pdb|1FPO|B Chain B, Hsc20 (Hscb), A J-Type Co-Chaperone From E. Coli
pdb|1FPO|C Chain C, Hsc20 (Hscb), A J-Type Co-Chaperone From E. Coli
Length = 171
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 92/168 (54%), Gaps = 7/168 (4%)
Query: 113 VDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRT 172
+DYF +FGL +Y++ + L +++D Q++ HPD S S+ E+ A +QS + +A++T
Sbjct: 1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQT 60
Query: 173 LTNPLARAIYILRLEGVEV-NEDETVSEPELLMEIMEIRE---AVEDAADSQTLKEIQSQ 228
L +PL RA Y+L L G ++ +E TV + LME +E+RE +E A D L+ +
Sbjct: 61 LRHPLMRAEYLLSLHGFDLASEQHTVRDTAFLMEQLELREELDEIEQAKDEARLESFIKR 120
Query: 229 MQEKLIHWGNSFADAYQNRNFDEARVCIRRMTYYHRVN---EEIAKKL 273
+++ + N +D A R++ + ++ E++ +KL
Sbjct: 121 VKKMFDTRHQLMVEQLDNETWDAAADTCRKLRFLDKLRSSAEQLEEKL 168
>pdb|4IT5|A Chain A, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|B Chain B, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|C Chain C, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|D Chain D, Chaperone Hscb From Vibrio Cholerae
Length = 174
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 62/91 (68%), Gaps = 1/91 (1%)
Query: 111 HSVDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAY 170
++ +YF++FGL ++E+ L +++ QKR HPD + SE++R A +Q+ ++ +AY
Sbjct: 2 NAXNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLXAVQQAAQINDAY 61
Query: 171 RTLTNPLARAIYILRLEGVEVN-EDETVSEP 200
+TL +PL RA Y+L L+G+E N E +T+ +P
Sbjct: 62 QTLKDPLRRAEYLLSLQGIEXNAEQQTLQDP 92
>pdb|3UO3|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
pdb|3UO3|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
Length = 181
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 75/147 (51%), Gaps = 14/147 (9%)
Query: 125 YEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYIL 184
+ I +L +Y+ Q + HPD+ SE QS + +AY TL +PL R+ Y+L
Sbjct: 28 WTIDQSRLRKEYRQLQAQHHPDMAQQGSE--------QSSTLNQAYHTLKDPLRRSQYML 79
Query: 185 R-LEGVEVNEDE-----TVSEPELLMEIMEIREAVEDAADSQTLKEIQSQMQEKLIHWGN 238
+ L +++ +++ T S+P+LL+++++I + + D +K ++ Q +E++
Sbjct: 80 KLLRNIDLTQEQTSNEVTTSDPQLLLKVLDIHDELSQMDDEAGVKLLEKQNKERIQDIEA 139
Query: 239 SFADAYQNRNFDEARVCIRRMTYYHRV 265
Y ++++ A + Y++ +
Sbjct: 140 QLGQCYNDKDYAAAVKLTVELKYWYNL 166
>pdb|3UO2|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
pdb|3UO2|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
Length = 175
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 75/147 (51%), Gaps = 14/147 (9%)
Query: 125 YEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYIL 184
+ I +L +Y+ Q + HPD+ SE QS + +AY TL +PL R+ Y+L
Sbjct: 20 WTIDQSRLRKEYRQLQAQHHPDMAQQGSE--------QSSTLNQAYHTLKDPLRRSQYML 71
Query: 185 R-LEGVEVNEDE-----TVSEPELLMEIMEIREAVEDAADSQTLKEIQSQMQEKLIHWGN 238
+ L +++ +++ T S+P+LL+++++I + + D +K ++ Q +E++
Sbjct: 72 KLLRNIDLTQEQTSNEVTTSDPQLLLKVLDIHDELSQMDDEAGVKLLEKQNKERIQDIEA 131
Query: 239 SFADAYQNRNFDEARVCIRRMTYYHRV 265
Y ++++ A + Y++ +
Sbjct: 132 QLGQCYNDKDYAAAVKLTVELKYWYNL 158
>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
Precursor From C.Elegans
Length = 109
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 43/96 (44%), Gaps = 19/96 (19%)
Query: 95 APFLFC--ESCRSVQPVDHSVDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKS 152
AP L+C E+C V V+ E +KL Y+ ++ HPD V +K
Sbjct: 7 APELYCGLENCYDVLEVNRE-------------EFDKQKLAKAYRALARKHHPDRVKNKE 53
Query: 153 EKEREYAAEQSGRVI-EAYRTLTNPLARAIYILRLE 187
EK AE+ RVI AY TL + A+ Y L+
Sbjct: 54 EK---LLAEERFRVIATAYETLKDDEAKTNYDYYLD 86
>pdb|2XQN|T Chain T, Complex Of The 2nd And 3rd Lim Domains Of Tes With The
Evh1 Domain Of Mena And The N-Terminal Domain Of
Actin-Like Protein Arp7a
Length = 126
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 12/69 (17%)
Query: 12 CQVAHRAL-PSTSRFKLSNYNYNFSTQIYFLDCTSSSRIQNPSLYCGLCYYFEILKFSGR 70
CQ H A+ P R +N++++ ST+ + C S I + + G
Sbjct: 66 CQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQ-----------KFMPVEGM 114
Query: 71 SFCSESAEK 79
FCS +K
Sbjct: 115 VFCSVECKK 123
>pdb|2IYB|E Chain E, Structure Of Complex Between The 3rd Lim Domain Of Tes
And The Evh1 Domain Of Mena
pdb|2IYB|F Chain F, Structure Of Complex Between The 3rd Lim Domain Of Tes
And The Evh1 Domain Of Mena
pdb|2IYB|G Chain G, Structure Of Complex Between The 3rd Lim Domain Of Tes
And The Evh1 Domain Of Mena
pdb|2IYB|H Chain H, Structure Of Complex Between The 3rd Lim Domain Of Tes
And The Evh1 Domain Of Mena
Length = 65
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 12/69 (17%)
Query: 12 CQVAHRAL-PSTSRFKLSNYNYNFSTQIYFLDCTSSSRIQNPSLYCGLCYYFEILKFSGR 70
CQ H A+ P R +N++++ ST+ + C S I + + G
Sbjct: 5 CQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQ-----------KFMPVEGM 53
Query: 71 SFCSESAEK 79
FCS +K
Sbjct: 54 VFCSVECKK 62
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,883,494
Number of Sequences: 62578
Number of extensions: 306881
Number of successful extensions: 796
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 787
Number of HSP's gapped (non-prelim): 17
length of query: 273
length of database: 14,973,337
effective HSP length: 97
effective length of query: 176
effective length of database: 8,903,271
effective search space: 1566975696
effective search space used: 1566975696
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)