Query 024044
Match_columns 273
No_of_seqs 226 out of 1540
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 08:31:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024044.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024044hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK01773 hscB co-chaperone Hsc 100.0 7.3E-45 1.6E-49 315.7 20.8 160 113-272 2-166 (173)
2 PRK03578 hscB co-chaperone Hsc 100.0 1.5E-43 3.3E-48 308.1 20.9 161 112-272 5-170 (176)
3 PRK01356 hscB co-chaperone Hsc 100.0 9E-43 1.9E-47 300.8 20.3 159 113-273 2-162 (166)
4 PRK05014 hscB co-chaperone Hsc 100.0 4.2E-42 9.1E-47 297.7 19.4 160 113-272 1-165 (171)
5 PRK00294 hscB co-chaperone Hsc 100.0 2.7E-41 5.8E-46 293.4 19.8 161 111-271 2-166 (173)
6 TIGR00714 hscB Fe-S protein as 100.0 8.4E-38 1.8E-42 267.5 20.2 148 125-272 1-152 (157)
7 KOG3192 Mitochondrial J-type c 100.0 8.8E-37 1.9E-41 258.5 15.9 167 107-273 2-168 (168)
8 COG1076 DjlA DnaJ-domain-conta 99.9 6.9E-22 1.5E-26 171.4 8.7 159 113-271 1-165 (174)
9 PF07743 HSCB_C: HSCB C-termin 99.7 1.5E-17 3.2E-22 126.2 11.1 74 198-271 2-78 (78)
10 COG0484 DnaJ DnaJ-class molecu 99.7 8.5E-17 1.8E-21 154.0 7.0 67 112-185 3-69 (371)
11 PF00226 DnaJ: DnaJ domain; I 99.6 7.5E-16 1.6E-20 111.7 5.7 64 114-183 1-64 (64)
12 KOG0713 Molecular chaperone (D 99.6 1.5E-15 3.2E-20 143.0 6.9 72 108-186 11-82 (336)
13 PRK14288 chaperone protein Dna 99.5 1.9E-14 4.1E-19 138.1 7.2 66 112-184 2-67 (369)
14 smart00271 DnaJ DnaJ molecular 99.5 5.7E-14 1.2E-18 100.1 6.9 60 113-178 1-60 (60)
15 KOG0718 Molecular chaperone (D 99.5 7.8E-14 1.7E-18 135.9 8.4 75 112-190 8-83 (546)
16 PRK14282 chaperone protein Dna 99.5 6.2E-14 1.3E-18 134.5 7.5 67 112-184 3-69 (369)
17 PRK14296 chaperone protein Dna 99.5 6.4E-14 1.4E-18 134.7 6.8 65 112-184 3-67 (372)
18 PRK14286 chaperone protein Dna 99.5 8.6E-14 1.9E-18 133.8 7.1 66 112-184 3-68 (372)
19 cd06257 DnaJ DnaJ domain or J- 99.5 2E-13 4.2E-18 95.6 6.7 55 114-175 1-55 (55)
20 PRK14295 chaperone protein Dna 99.4 1.1E-13 2.4E-18 133.8 7.2 66 112-184 8-73 (389)
21 PRK14297 chaperone protein Dna 99.4 1E-13 2.2E-18 133.5 6.6 66 112-184 3-68 (380)
22 PRK14301 chaperone protein Dna 99.4 1.1E-13 2.4E-18 133.1 6.8 66 112-184 3-68 (373)
23 PRK14279 chaperone protein Dna 99.4 1.4E-13 2.9E-18 133.3 7.0 67 112-185 8-74 (392)
24 KOG0716 Molecular chaperone (D 99.4 1.9E-13 4E-18 125.7 7.5 67 112-185 30-96 (279)
25 PRK14294 chaperone protein Dna 99.4 1.9E-13 4.2E-18 131.0 7.2 66 112-184 3-68 (366)
26 PRK14287 chaperone protein Dna 99.4 2E-13 4.4E-18 131.2 7.0 65 112-184 3-67 (371)
27 PRK14276 chaperone protein Dna 99.4 2.2E-13 4.7E-18 131.3 7.0 65 112-184 3-67 (380)
28 PRK14298 chaperone protein Dna 99.4 1.8E-13 4E-18 131.8 6.5 65 112-184 4-68 (377)
29 PRK14291 chaperone protein Dna 99.4 2.1E-13 4.6E-18 131.4 6.8 66 112-185 2-67 (382)
30 PRK14280 chaperone protein Dna 99.4 2.3E-13 5E-18 130.9 7.0 64 113-184 4-67 (376)
31 PRK14277 chaperone protein Dna 99.4 2.3E-13 5E-18 131.3 7.0 66 112-184 4-69 (386)
32 PRK10767 chaperone protein Dna 99.4 2.6E-13 5.7E-18 130.1 7.1 66 112-184 3-68 (371)
33 PRK14281 chaperone protein Dna 99.4 2.6E-13 5.7E-18 131.4 7.1 65 113-184 3-67 (397)
34 PRK14299 chaperone protein Dna 99.4 2.9E-13 6.2E-18 126.1 6.7 65 112-184 3-67 (291)
35 PRK14284 chaperone protein Dna 99.4 3.3E-13 7.1E-18 130.5 7.1 65 113-184 1-65 (391)
36 PRK14278 chaperone protein Dna 99.4 4.3E-13 9.3E-18 129.2 7.2 64 113-184 3-66 (378)
37 PRK14285 chaperone protein Dna 99.4 4.7E-13 1E-17 128.4 7.3 65 113-184 3-67 (365)
38 PRK14290 chaperone protein Dna 99.4 4.5E-13 9.6E-18 128.4 7.0 66 113-184 3-68 (365)
39 PTZ00341 Ring-infected erythro 99.4 5.3E-12 1.2E-16 132.0 15.2 83 112-204 572-654 (1136)
40 PTZ00037 DnaJ_C chaperone prot 99.4 3.7E-13 8.1E-18 131.5 6.2 62 112-184 27-88 (421)
41 PRK14293 chaperone protein Dna 99.4 5.7E-13 1.2E-17 128.1 7.3 64 113-184 3-66 (374)
42 PRK14300 chaperone protein Dna 99.4 5.6E-13 1.2E-17 128.1 7.1 64 113-184 3-66 (372)
43 PRK14283 chaperone protein Dna 99.4 6.4E-13 1.4E-17 127.9 6.8 65 112-184 4-68 (378)
44 PRK14292 chaperone protein Dna 99.4 6.7E-13 1.5E-17 127.3 6.6 64 113-184 2-65 (371)
45 TIGR02349 DnaJ_bact chaperone 99.4 6.5E-13 1.4E-17 126.5 6.0 63 114-184 1-63 (354)
46 KOG0719 Molecular chaperone (D 99.4 6.7E-12 1.4E-16 113.5 12.2 108 112-231 13-120 (264)
47 PRK10266 curved DNA-binding pr 99.4 8E-13 1.7E-17 123.9 6.2 65 113-185 4-68 (306)
48 KOG0712 Molecular chaperone (D 99.4 9.7E-13 2.1E-17 124.8 6.8 64 112-185 3-66 (337)
49 PRK14289 chaperone protein Dna 99.4 1.2E-12 2.6E-17 126.2 7.2 66 112-184 4-69 (386)
50 KOG0715 Molecular chaperone (D 99.3 4.4E-12 9.6E-17 118.4 7.9 69 112-188 42-110 (288)
51 KOG0691 Molecular chaperone (D 99.3 1.8E-11 4E-16 114.7 10.8 69 112-187 4-72 (296)
52 TIGR03835 termin_org_DnaJ term 99.3 1.5E-11 3.3E-16 126.2 9.2 66 113-186 2-67 (871)
53 COG2214 CbpA DnaJ-class molecu 99.3 1.1E-11 2.3E-16 105.7 6.6 68 112-185 5-72 (237)
54 KOG0717 Molecular chaperone (D 99.2 1.3E-11 2.8E-16 120.4 6.6 69 111-185 6-74 (508)
55 KOG0721 Molecular chaperone (D 99.2 5.4E-11 1.2E-15 106.6 6.9 70 112-190 98-167 (230)
56 PHA03102 Small T antigen; Revi 99.1 1.8E-10 3.8E-15 98.8 6.4 63 113-184 5-67 (153)
57 PRK09430 djlA Dna-J like membr 99.0 7.7E-10 1.7E-14 102.4 6.4 63 111-175 198-262 (267)
58 KOG0624 dsRNA-activated protei 98.9 1.9E-09 4.1E-14 103.1 6.8 69 111-183 392-460 (504)
59 KOG0720 Molecular chaperone (D 98.9 2.4E-09 5.3E-14 104.6 5.8 71 109-187 231-301 (490)
60 KOG0722 Molecular chaperone (D 98.8 2.1E-09 4.7E-14 98.7 4.0 68 112-187 32-99 (329)
61 PTZ00100 DnaJ chaperone protei 98.7 2.3E-08 4.9E-13 82.2 5.8 52 112-174 64-115 (116)
62 COG5407 SEC63 Preprotein trans 98.7 2.2E-08 4.7E-13 98.1 5.9 72 112-185 97-168 (610)
63 PHA02624 large T antigen; Prov 98.6 4.3E-08 9.4E-13 99.7 5.4 63 112-183 10-72 (647)
64 KOG0714 Molecular chaperone (D 98.6 3.8E-08 8.2E-13 88.0 4.2 69 112-186 2-70 (306)
65 KOG0550 Molecular chaperone (D 98.5 9.7E-08 2.1E-12 92.9 5.1 72 112-192 372-443 (486)
66 KOG1150 Predicted molecular ch 98.4 3.6E-07 7.9E-12 81.6 5.6 64 112-181 52-115 (250)
67 COG5269 ZUO1 Ribosome-associat 98.0 6.5E-06 1.4E-10 76.7 5.1 80 112-194 42-122 (379)
68 KOG0568 Molecular chaperone (D 97.2 0.00049 1.1E-08 63.1 5.1 56 112-175 46-102 (342)
69 KOG1789 Endocytosis protein RM 96.9 0.0012 2.5E-08 71.1 5.5 53 114-174 1282-1336(2235)
70 KOG0723 Molecular chaperone (D 96.8 0.0022 4.7E-08 52.2 4.8 53 112-175 55-107 (112)
71 KOG0431 Auxilin-like protein a 94.9 0.045 9.7E-07 54.7 5.6 49 126-174 399-449 (453)
72 COG1076 DjlA DnaJ-domain-conta 94.7 0.03 6.4E-07 48.7 3.3 59 113-173 113-173 (174)
73 PF13248 zf-ribbon_3: zinc-rib 93.7 0.04 8.6E-07 33.6 1.5 22 83-105 3-24 (26)
74 PF14687 DUF4460: Domain of un 93.2 0.23 5E-06 40.6 5.6 50 127-177 6-55 (112)
75 PF13240 zinc_ribbon_2: zinc-r 91.0 0.13 2.8E-06 30.7 1.3 21 84-105 1-21 (23)
76 PF09538 FYDLN_acid: Protein o 88.5 0.44 9.5E-06 38.9 2.9 30 81-110 8-39 (108)
77 PRK14559 putative protein seri 84.9 0.86 1.9E-05 47.6 3.6 35 71-106 16-50 (645)
78 PF10571 UPF0547: Uncharacteri 83.3 0.93 2E-05 27.8 1.8 22 84-106 2-23 (26)
79 TIGR02300 FYDLN_acid conserved 80.0 1.6 3.4E-05 36.8 2.7 30 81-110 8-39 (129)
80 PRK04023 DNA polymerase II lar 76.5 4.5 9.8E-05 44.3 5.5 78 69-149 625-704 (1121)
81 PRK00420 hypothetical protein; 74.0 2.3 5.1E-05 34.9 2.1 24 82-105 23-48 (112)
82 PF03357 Snf7: Snf7; InterPro 72.2 35 0.00075 28.4 8.9 50 221-270 12-61 (171)
83 PF12773 DZR: Double zinc ribb 69.6 4.5 9.8E-05 27.5 2.4 25 83-107 13-39 (50)
84 PTZ00446 vacuolar sorting prot 67.9 52 0.0011 29.5 9.4 64 202-271 25-88 (191)
85 COG1592 Rubrerythrin [Energy p 67.6 3.1 6.6E-05 36.5 1.5 31 83-119 135-165 (166)
86 KOG2577 Transcription factor E 66.6 42 0.00092 32.8 9.1 101 124-247 68-181 (354)
87 PF13877 RPAP3_C: Potential Mo 65.3 18 0.00038 27.8 5.3 49 164-212 8-58 (94)
88 PF03656 Pam16: Pam16; InterP 65.1 8.6 0.00019 32.2 3.7 53 114-177 59-111 (127)
89 PF07754 DUF1610: Domain of un 62.0 5.8 0.00013 24.0 1.5 21 85-105 1-24 (24)
90 smart00661 RPOL9 RNA polymeras 61.5 5.5 0.00012 27.2 1.6 29 84-112 2-35 (52)
91 PF14803 Nudix_N_2: Nudix N-te 60.2 2.6 5.5E-05 27.5 -0.3 23 84-106 2-31 (34)
92 COG1439 Predicted nucleic acid 55.8 5.4 0.00012 35.3 0.9 23 82-105 139-161 (177)
93 COG1645 Uncharacterized Zn-fin 55.2 6.3 0.00014 33.3 1.2 24 82-105 28-52 (131)
94 PF09889 DUF2116: Uncharacteri 55.0 4 8.7E-05 29.9 0.0 22 82-104 3-25 (59)
95 PF08271 TF_Zn_Ribbon: TFIIB z 54.8 5.3 0.00012 26.7 0.6 25 84-108 2-30 (43)
96 PRK14714 DNA polymerase II lar 54.2 9.7 0.00021 42.7 2.7 23 84-108 681-703 (1337)
97 PF08772 NOB1_Zn_bind: Nin one 53.8 5.6 0.00012 30.3 0.6 23 83-105 10-32 (73)
98 PRK14890 putative Zn-ribbon RN 53.4 9.4 0.0002 28.0 1.7 8 98-105 26-33 (59)
99 TIGR03338 phnR_burk phosphonat 52.7 90 0.002 26.9 8.2 52 165-216 39-95 (212)
100 smart00685 DM14 Repeats in fly 51.5 93 0.002 22.7 6.7 42 229-270 4-45 (59)
101 cd00729 rubredoxin_SM Rubredox 50.3 9 0.0002 24.7 1.1 22 84-105 4-26 (34)
102 PF02151 UVR: UvrB/uvrC motif; 49.3 52 0.0011 21.2 4.6 32 231-262 2-33 (36)
103 KOG2910 Uncharacterized conser 48.1 99 0.0021 28.0 7.6 61 205-271 17-77 (209)
104 PF09986 DUF2225: Uncharacteri 47.6 2.1E+02 0.0045 25.6 12.0 101 98-213 49-151 (214)
105 KOG0687 26S proteasome regulat 47.6 65 0.0014 31.6 6.9 46 222-267 73-119 (393)
106 PRK12380 hydrogenase nickel in 47.4 11 0.00024 30.7 1.4 25 82-106 70-95 (113)
107 PF09862 DUF2089: Protein of u 47.3 11 0.00024 31.0 1.4 35 85-120 1-35 (113)
108 PF14353 CpXC: CpXC protein 46.9 12 0.00025 30.6 1.5 16 97-112 38-53 (128)
109 PF07729 FCD: FCD domain; Int 46.8 23 0.00051 26.6 3.2 10 206-215 2-11 (125)
110 PF08792 A2L_zn_ribbon: A2L zi 46.5 8.5 0.00018 24.8 0.5 26 83-108 4-32 (33)
111 PRK14559 putative protein seri 46.0 13 0.00028 39.1 2.0 26 82-110 15-40 (645)
112 KOG1129 TPR repeat-containing 45.9 31 0.00068 34.0 4.4 54 163-222 259-312 (478)
113 PRK00398 rpoP DNA-directed RNA 44.8 16 0.00035 24.7 1.7 23 83-105 4-29 (46)
114 KOG3795 Uncharacterized conser 43.9 11 0.00024 33.6 1.1 39 81-125 14-52 (230)
115 PRK14811 formamidopyrimidine-D 42.9 17 0.00037 33.8 2.1 28 82-109 235-267 (269)
116 PRK12775 putative trifunctiona 42.4 1.9E+02 0.004 32.1 10.2 29 82-110 821-852 (1006)
117 PF03993 DUF349: Domain of Unk 42.4 1E+02 0.0023 22.2 6.0 41 220-260 23-63 (77)
118 PRK03824 hypA hydrogenase nick 42.2 13 0.00029 31.1 1.2 9 98-106 108-116 (135)
119 PF07361 Cytochrom_B562: Cytoc 42.0 1E+02 0.0022 24.6 6.3 60 201-261 25-93 (103)
120 PRK01343 zinc-binding protein; 42.0 22 0.00048 25.9 2.1 27 81-107 8-35 (57)
121 PRK11414 colanic acid/biofilm 42.0 2.1E+02 0.0047 24.9 9.0 52 165-216 39-95 (221)
122 TIGR00100 hypA hydrogenase nic 40.8 15 0.00033 29.8 1.3 25 83-107 71-96 (115)
123 COG0375 HybF Zn finger protein 39.9 14 0.00031 30.5 1.0 25 83-107 71-96 (115)
124 TIGR01384 TFS_arch transcripti 39.2 23 0.0005 27.7 2.1 27 84-110 2-29 (104)
125 PRK14714 DNA polymerase II lar 39.2 26 0.00056 39.6 3.1 34 72-105 681-717 (1337)
126 PF01627 Hpt: Hpt domain; Int 38.8 85 0.0018 22.5 5.0 14 246-259 26-39 (90)
127 TIGR02960 SigX5 RNA polymerase 37.8 1.5E+02 0.0033 27.3 7.7 91 163-257 133-230 (324)
128 PRK10445 endonuclease VIII; Pr 37.6 20 0.00043 33.2 1.7 23 82-104 235-262 (263)
129 COG0675 Transposase and inacti 37.3 20 0.00043 32.5 1.6 26 82-109 309-334 (364)
130 PRK09636 RNA polymerase sigma 37.2 1.3E+02 0.0028 27.6 7.1 88 163-257 106-197 (293)
131 COG1802 GntR Transcriptional r 37.1 2.1E+02 0.0045 25.2 8.2 52 165-216 44-100 (230)
132 PF04012 PspA_IM30: PspA/IM30 36.7 2.9E+02 0.0064 24.2 13.4 50 221-270 55-104 (221)
133 PF03833 PolC_DP2: DNA polymer 36.7 12 0.00025 40.6 0.0 19 131-149 715-733 (900)
134 PRK01103 formamidopyrimidine/5 36.6 21 0.00045 33.1 1.7 24 82-105 245-273 (274)
135 PF00098 zf-CCHC: Zinc knuckle 36.2 37 0.00079 18.9 2.0 9 83-91 1-9 (18)
136 PRK03681 hypA hydrogenase nick 36.0 23 0.0005 28.8 1.6 25 83-107 71-97 (114)
137 COG1198 PriA Primosomal protei 35.8 31 0.00068 36.8 3.0 15 200-214 617-631 (730)
138 PF07282 OrfB_Zn_ribbon: Putat 35.6 25 0.00054 25.4 1.7 27 82-108 28-57 (69)
139 PF06044 DRP: Dam-replacing fa 35.5 15 0.00033 34.2 0.6 24 82-105 31-61 (254)
140 TIGR00577 fpg formamidopyrimid 35.1 22 0.00048 33.0 1.6 23 82-104 245-272 (272)
141 PRK12286 rpmF 50S ribosomal pr 34.9 25 0.00054 25.4 1.5 21 83-105 28-48 (57)
142 COG0266 Nei Formamidopyrimidin 34.2 23 0.00051 33.4 1.6 23 82-104 245-272 (273)
143 PRK13945 formamidopyrimidine-D 33.9 26 0.00056 32.7 1.8 23 82-104 254-281 (282)
144 PRK00564 hypA hydrogenase nick 33.7 25 0.00054 28.7 1.5 24 83-106 72-97 (117)
145 PF12128 DUF3584: Protein of u 32.8 5.1E+02 0.011 29.2 11.9 59 123-187 596-654 (1201)
146 PF01783 Ribosomal_L32p: Ribos 32.6 24 0.00051 25.2 1.1 21 83-105 27-47 (56)
147 PRK14810 formamidopyrimidine-D 32.4 27 0.00057 32.5 1.7 23 82-104 244-271 (272)
148 PF01895 PhoU: PhoU domain; I 32.2 1.9E+02 0.004 20.6 6.5 50 221-270 29-82 (88)
149 PHA00626 hypothetical protein 32.2 28 0.0006 25.5 1.3 13 95-107 21-33 (59)
150 PRK01919 tatB sec-independent 31.9 1.3E+02 0.0028 26.6 5.7 24 222-245 70-93 (169)
151 COG2888 Predicted Zn-ribbon RN 31.3 28 0.0006 25.7 1.3 8 83-90 28-35 (61)
152 KOG0724 Zuotin and related mol 31.3 60 0.0013 30.6 3.9 51 128-179 5-55 (335)
153 PF08274 PhnA_Zn_Ribbon: PhnA 30.9 18 0.00039 23.0 0.2 23 83-105 3-27 (30)
154 TIGR02642 phage_xxxx uncharact 30.5 58 0.0013 29.0 3.4 61 82-142 99-161 (186)
155 smart00659 RPOLCX RNA polymera 30.5 36 0.00079 23.2 1.7 22 84-105 4-27 (44)
156 TIGR02098 MJ0042_CXXC MJ0042 f 30.4 33 0.00071 22.0 1.4 23 83-105 3-33 (38)
157 TIGR03655 anti_R_Lar restricti 30.4 34 0.00073 23.9 1.6 27 83-109 2-38 (53)
158 PF10475 DUF2450: Protein of u 30.3 2.5E+02 0.0053 26.1 7.8 31 232-262 126-156 (291)
159 PRK09635 sigI RNA polymerase s 30.3 2.5E+02 0.0054 26.2 7.8 91 159-256 105-199 (290)
160 TIGR01031 rpmF_bact ribosomal 30.2 30 0.00066 24.7 1.3 21 83-105 27-47 (55)
161 PF03461 TRCF: TRCF domain; I 30.1 1.1E+02 0.0024 24.0 4.7 40 204-243 17-56 (101)
162 PF14276 DUF4363: Domain of un 29.5 1E+02 0.0022 24.7 4.5 43 223-265 48-90 (121)
163 TIGR02957 SigX4 RNA polymerase 29.4 1.7E+02 0.0037 26.8 6.5 89 162-257 98-190 (281)
164 TIGR01666 YCCS hypothetical me 29.4 6.4E+02 0.014 27.0 11.4 46 128-173 159-214 (704)
165 PF14319 Zn_Tnp_IS91: Transpos 29.1 40 0.00086 27.3 2.0 25 83-107 43-70 (111)
166 COG1198 PriA Primosomal protei 29.1 45 0.00098 35.6 2.9 20 128-147 515-534 (730)
167 cd00088 HPT Histidine Phosphot 28.9 1.1E+02 0.0024 22.8 4.4 9 248-256 31-39 (94)
168 TIGR00686 phnA alkylphosphonat 28.6 29 0.00063 28.5 1.1 27 83-109 3-31 (109)
169 COG2956 Predicted N-acetylgluc 28.5 35 0.00077 33.4 1.8 27 82-109 354-380 (389)
170 PF11867 DUF3387: Domain of un 28.2 5.2E+02 0.011 24.5 9.8 43 229-271 66-109 (335)
171 COG5187 RPN7 26S proteasome re 28.1 2E+02 0.0044 28.1 6.7 11 198-208 79-89 (412)
172 PRK11788 tetratricopeptide rep 27.9 36 0.00077 31.6 1.7 26 81-107 353-378 (389)
173 cd00350 rubredoxin_like Rubred 27.9 48 0.001 20.9 1.8 22 84-105 3-25 (33)
174 PF13097 CENP-U: CENP-A nucleo 27.3 3.5E+02 0.0076 24.0 7.6 42 200-241 111-152 (175)
175 PF13838 Clathrin_H_link: Clat 27.3 1E+02 0.0022 23.0 3.7 25 234-258 7-31 (66)
176 PRK08241 RNA polymerase factor 27.2 1.6E+02 0.0035 27.4 6.0 93 163-256 144-239 (339)
177 PF06677 Auto_anti-p27: Sjogre 27.2 33 0.00071 23.2 1.0 23 82-104 17-41 (41)
178 smart00834 CxxC_CXXC_SSSS Puta 27.1 51 0.0011 21.1 1.9 22 84-105 7-34 (41)
179 PF12172 DUF35_N: Rubredoxin-l 27.0 16 0.00036 23.4 -0.5 22 83-105 12-33 (37)
180 PHA02942 putative transposase; 26.6 49 0.0011 32.4 2.4 26 82-107 325-352 (383)
181 PRK14873 primosome assembly pr 26.3 47 0.001 35.0 2.4 13 201-213 553-565 (665)
182 TIGR00595 priA primosomal prot 26.2 55 0.0012 33.1 2.8 29 82-110 222-253 (505)
183 PRK04023 DNA polymerase II lar 26.0 73 0.0016 35.4 3.8 25 83-110 652-676 (1121)
184 PF07304 SRA1: Steroid recepto 26.0 4.2E+02 0.0091 22.6 8.9 25 234-258 91-115 (157)
185 PF13812 PPR_3: Pentatricopept 25.8 1.5E+02 0.0032 17.3 3.8 25 237-261 5-29 (34)
186 PF09779 Ima1_N: Ima1 N-termin 25.5 63 0.0014 26.9 2.6 31 84-114 2-37 (131)
187 PRK11032 hypothetical protein; 25.4 47 0.001 29.0 1.9 35 72-106 114-151 (160)
188 PRK00762 hypA hydrogenase nick 25.4 45 0.00097 27.5 1.7 24 83-107 71-102 (124)
189 PF05600 DUF773: Protein of un 25.0 2E+02 0.0043 29.4 6.5 23 166-188 340-362 (507)
190 PRK10220 hypothetical protein; 24.7 44 0.00094 27.5 1.4 28 83-110 4-33 (111)
191 PRK12496 hypothetical protein; 24.7 54 0.0012 28.3 2.2 23 83-105 128-151 (164)
192 PF11278 DUF3079: Protein of u 24.6 64 0.0014 23.0 2.0 27 80-107 11-38 (52)
193 PF10191 COG7: Golgi complex c 24.4 2.8E+02 0.0061 29.7 7.8 29 232-260 129-157 (766)
194 COG2198 ArcB FOG: HPt domain [ 24.1 3.1E+02 0.0066 21.6 6.3 61 202-262 32-104 (122)
195 PRK00226 greA transcription el 24.0 4.4E+02 0.0095 22.2 7.9 48 220-267 10-71 (157)
196 PF03194 LUC7: LUC7 N_terminus 23.9 3.9E+02 0.0085 24.7 7.8 44 228-271 127-170 (254)
197 PRK03988 translation initiatio 23.8 51 0.0011 27.9 1.8 28 83-110 103-136 (138)
198 PRK00432 30S ribosomal protein 23.8 49 0.0011 23.2 1.4 23 83-105 21-45 (50)
199 PF08447 PAS_3: PAS fold; Int 23.7 17 0.00037 26.3 -1.1 30 112-147 5-35 (91)
200 PF01155 HypA: Hydrogenase exp 23.6 18 0.0004 29.2 -0.9 24 83-106 71-95 (113)
201 KOG0317 Predicted E3 ubiquitin 23.6 20 0.00043 34.1 -0.8 50 48-107 234-283 (293)
202 PRK13130 H/ACA RNA-protein com 23.5 86 0.0019 22.7 2.6 22 83-107 6-27 (56)
203 TIGR02956 TMAO_torS TMAO reduc 23.3 2.4E+02 0.0052 29.9 7.1 60 200-260 860-919 (968)
204 PF03604 DNA_RNApol_7kD: DNA d 22.9 65 0.0014 20.6 1.7 21 85-105 3-25 (32)
205 TIGR00570 cdk7 CDK-activating 22.6 7E+02 0.015 24.1 11.0 28 81-108 27-54 (309)
206 PRK14102 nifW nitrogenase stab 22.6 1.5E+02 0.0032 24.2 4.1 61 111-174 13-76 (105)
207 TIGR00756 PPR pentatricopeptid 22.4 1.4E+02 0.0029 17.1 3.1 21 240-260 7-27 (35)
208 PF12644 DUF3782: Protein of u 22.3 2.9E+02 0.0062 19.5 5.7 41 205-245 9-52 (64)
209 smart00531 TFIIE Transcription 22.3 37 0.00079 28.6 0.6 25 83-107 100-133 (147)
210 PF08312 cwf21: cwf21 domain; 22.2 2.5E+02 0.0054 19.4 4.6 14 204-217 11-24 (46)
211 smart00668 CTLH C-terminal to 22.1 1.4E+02 0.003 20.1 3.4 22 238-259 6-27 (58)
212 PF13719 zinc_ribbon_5: zinc-r 22.0 55 0.0012 21.3 1.3 23 84-106 4-34 (37)
213 PF13779 DUF4175: Domain of un 21.9 3.5E+02 0.0075 29.5 7.9 52 209-260 481-567 (820)
214 PRK06342 transcription elongat 21.7 3E+02 0.0066 23.7 6.2 46 218-267 32-81 (160)
215 PF10146 zf-C4H2: Zinc finger- 21.7 4.3E+02 0.0094 24.2 7.5 10 204-213 46-55 (230)
216 COG1545 Predicted nucleic-acid 21.5 44 0.00096 28.1 0.9 24 82-106 29-52 (140)
217 PF13446 RPT: A repeated domai 21.4 3E+02 0.0065 19.3 5.4 26 114-141 6-31 (62)
218 TIGR02302 aProt_lowcomp conser 21.2 3.7E+02 0.008 29.5 7.9 52 209-260 512-597 (851)
219 TIGR00595 priA primosomal prot 21.1 76 0.0017 32.1 2.7 49 51-105 211-261 (505)
220 PRK00423 tfb transcription ini 21.0 54 0.0012 31.0 1.5 25 83-107 12-40 (310)
221 PF06906 DUF1272: Protein of u 20.9 43 0.00094 24.4 0.7 22 71-92 30-51 (57)
222 COG4640 Predicted membrane pro 20.9 55 0.0012 32.8 1.5 22 83-105 2-23 (465)
223 PRK05978 hypothetical protein; 20.9 93 0.002 26.8 2.8 24 82-105 33-60 (148)
224 PF15290 Syntaphilin: Golgi-lo 20.9 2.9E+02 0.0063 26.5 6.2 11 100-110 45-55 (305)
225 PF10279 Latarcin: Latarcin pr 20.7 21 0.00046 27.6 -1.1 44 229-272 36-80 (81)
226 COG1283 NptA Na+/phosphate sym 20.5 9.7E+02 0.021 24.9 14.9 35 237-271 455-489 (533)
227 cd04476 RPA1_DBD_C RPA1_DBD_C: 20.5 53 0.0012 27.7 1.2 24 83-106 35-60 (166)
228 PF02150 RNA_POL_M_15KD: RNA p 20.5 18 0.0004 23.4 -1.3 27 84-110 3-33 (35)
229 COG1656 Uncharacterized conser 20.2 50 0.0011 29.0 1.0 11 82-92 97-107 (165)
230 PF11594 Med28: Mediator compl 20.1 4.1E+02 0.0088 21.7 6.2 15 255-269 61-75 (106)
231 PF07709 SRR: Seven Residue Re 20.1 63 0.0014 16.8 1.0 12 163-174 3-14 (14)
232 PRK14892 putative transcriptio 20.1 59 0.0013 26.1 1.3 23 83-105 22-50 (99)
233 PRK14873 primosome assembly pr 20.0 80 0.0017 33.3 2.6 14 168-181 496-509 (665)
No 1
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=100.00 E-value=7.3e-45 Score=315.68 Aligned_cols=160 Identities=25% Similarity=0.430 Sum_probs=151.9
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHhh-CCcC
Q 024044 113 VDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYILRLE-GVEV 191 (273)
Q Consensus 113 ~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL~L~-G~~~ 191 (273)
.|||++||||++|+||...|+++|++||+.+|||+|+++++.|+++|.++|+.||+||+||+||++||.|+|.|+ |+++
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L~~g~~~ 81 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIALNTGEQQ 81 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHhccCCCC
Confidence 589999999999999999999999999999999999999999999999999999999999999999999999999 8875
Q ss_pred C-CCCCCCCHHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhHHHHHH
Q 024044 192 N-EDETVSEPELLMEIMEIREAVEDA---ADSQTLKEIQSQMQEKLIHWGNSFADAYQNRNFDEARVCIRRMTYYHRVNE 267 (273)
Q Consensus 192 ~-ee~~~~d~efLmeiME~rE~leea---~d~~~L~~l~~~~~~~i~~~~~~l~~af~~~d~~~A~~~l~kLkYl~ki~~ 267 (273)
. ++.+..||+|||+||||||+||++ .|.++|++|..+++++++++.+.|+++|+.+||++|+..++||+||.||.+
T Consensus 82 ~~e~~~~~d~~fLme~ME~rE~lee~~~~~d~~~L~~l~~~v~~~~~~~~~~l~~~~~~~d~~~A~~~~~rL~y~~kl~~ 161 (173)
T PRK01773 82 NLEEKSTQDMAFLMQQMEWREQLEEIEQQQDEDALTAFSKEIKQEQQAILTELSTALNSQQWQQASQINDRLRFIKKLII 161 (173)
T ss_pred CcccccCCCHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 4 456778999999999999999986 367889999999999999999999999999999999999999999999999
Q ss_pred HHHhh
Q 024044 268 EIAKK 272 (273)
Q Consensus 268 eI~~K 272 (273)
+|++.
T Consensus 162 ei~~~ 166 (173)
T PRK01773 162 EIERV 166 (173)
T ss_pred HHHHH
Confidence 99853
No 2
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=100.00 E-value=1.5e-43 Score=308.14 Aligned_cols=161 Identities=29% Similarity=0.529 Sum_probs=153.9
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHhhCCcC
Q 024044 112 SVDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYILRLEGVEV 191 (273)
Q Consensus 112 ~~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL~L~G~~~ 191 (273)
..|||++||||++|+||..+|+++||+||+++|||+|++.++.|++++.++|+.||+||+||+||.+|+.|+|.|+|+++
T Consensus 5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l~G~~~ 84 (176)
T PRK03578 5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHLRGVDV 84 (176)
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHhcCCCC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC-CCCCCCHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHhHHHHH
Q 024044 192 NE-DETVSEPELLMEIMEIREAVEDAA---DSQTLKEIQSQMQEKLIHWGNSFADAYQN-RNFDEARVCIRRMTYYHRVN 266 (273)
Q Consensus 192 ~e-e~~~~d~efLmeiME~rE~leea~---d~~~L~~l~~~~~~~i~~~~~~l~~af~~-~d~~~A~~~l~kLkYl~ki~ 266 (273)
.. +.+..||+||||||||||+|+++. |.++|+.|..+++++++++.+.|.++|+. +||+.|+..+++|+||.||.
T Consensus 85 ~~e~~~~~d~~fLme~mE~rE~lee~~~~~d~~~L~~l~~e~~~~~~~~~~~l~~~~~~~~d~~~A~~~~~kL~y~~kl~ 164 (176)
T PRK03578 85 QAENNTAMPPAFLMQQMEWREAIEDARAARDVDALDALLAELRDERRERYAELGALLDSRGDDQAAAEAVRQLMFIEKLA 164 (176)
T ss_pred ccccCCCCCHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHH
Confidence 64 457789999999999999999986 77899999999999999999999999998 89999999999999999999
Q ss_pred HHHHhh
Q 024044 267 EEIAKK 272 (273)
Q Consensus 267 ~eI~~K 272 (273)
++|+++
T Consensus 165 ~ei~~~ 170 (176)
T PRK03578 165 QEIGAA 170 (176)
T ss_pred HHHHHH
Confidence 999876
No 3
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=100.00 E-value=9e-43 Score=300.76 Aligned_cols=159 Identities=25% Similarity=0.419 Sum_probs=150.2
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHhhCCcCC
Q 024044 113 VDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYILRLEGVEVN 192 (273)
Q Consensus 113 ~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL~L~G~~~~ 192 (273)
.|||++||||++|+||..+|+++||+||+++|||++++ +.+++.+.++|+.||+||+||+||.+||.|+|.++|+++.
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~--~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l~g~~~~ 79 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKT--LQEKEQNLIIASELNNAYSTLKDALKRAEYMLLLQNINLN 79 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHccCCCCC
Confidence 58999999999999999999999999999999999975 4566777889999999999999999999999999999987
Q ss_pred CC--CCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhHHHHHHHHH
Q 024044 193 ED--ETVSEPELLMEIMEIREAVEDAADSQTLKEIQSQMQEKLIHWGNSFADAYQNRNFDEARVCIRRMTYYHRVNEEIA 270 (273)
Q Consensus 193 ee--~~~~d~efLmeiME~rE~leea~d~~~L~~l~~~~~~~i~~~~~~l~~af~~~d~~~A~~~l~kLkYl~ki~~eI~ 270 (273)
++ .+.+||+|||++||+||+||++.+.++|++|..+++++++++.+.|+++|+.+||+.|+..++||+||.||.++|+
T Consensus 80 ~~~~~~~~d~~fLme~me~rE~le~~~~~~~L~~l~~~~~~~~~~~~~~l~~~f~~~d~~~A~~~~~~L~y~~kl~~~i~ 159 (166)
T PRK01356 80 DEKTRSLLSPLELSIFWDEMERIENTILFSDLEKIKNKYELMYKNEIDSLKQAFEEQNLSDATIKTSKLKYIGTLLNKLQ 159 (166)
T ss_pred CccccccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 65 3678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhC
Q 024044 271 KKL 273 (273)
Q Consensus 271 ~Kl 273 (273)
.|+
T Consensus 160 ~k~ 162 (166)
T PRK01356 160 EKI 162 (166)
T ss_pred HHh
Confidence 985
No 4
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=100.00 E-value=4.2e-42 Score=297.73 Aligned_cols=160 Identities=31% Similarity=0.617 Sum_probs=151.2
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHhhCCcCC
Q 024044 113 VDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYILRLEGVEVN 192 (273)
Q Consensus 113 ~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL~L~G~~~~ 192 (273)
+|||++||||++|++|..+|+++||+||+++|||++++.++.++..+.++|+.||+||+||+||.+||.|+|.|+|+++.
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~l~g~~~~ 80 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSLHGFDLA 80 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHHhcCCccc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CC-CCCCCHHHHHHHHHHHHHHHhcC---C-HHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhHHHHHH
Q 024044 193 ED-ETVSEPELLMEIMEIREAVEDAA---D-SQTLKEIQSQMQEKLIHWGNSFADAYQNRNFDEARVCIRRMTYYHRVNE 267 (273)
Q Consensus 193 ee-~~~~d~efLmeiME~rE~leea~---d-~~~L~~l~~~~~~~i~~~~~~l~~af~~~d~~~A~~~l~kLkYl~ki~~ 267 (273)
.+ .+..||+|||+||||||+|+++. + .+.|.+|..+++++++++.+.|.++|+.+||++|+..++||+||.||.+
T Consensus 81 ~~~~~~~d~efLme~me~rE~le~~~~~~d~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~d~~~A~~~~~~Lky~~kl~~ 160 (171)
T PRK05014 81 HEQHTVRDTAFLMEQMELREELEDIEQSKDPEAALESFIKRVKKMFKTRLQQMVEQLDNEAWDAAADTVRKLKFLDKLRS 160 (171)
T ss_pred cccCCcCCHHHHHHHHHHHHHHHhhccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHH
Confidence 54 56789999999999999999986 3 4459999999999999999999999999999999999999999999999
Q ss_pred HHHhh
Q 024044 268 EIAKK 272 (273)
Q Consensus 268 eI~~K 272 (273)
+|+++
T Consensus 161 ei~~~ 165 (171)
T PRK05014 161 EVEQL 165 (171)
T ss_pred HHHHH
Confidence 99875
No 5
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=100.00 E-value=2.7e-41 Score=293.37 Aligned_cols=161 Identities=29% Similarity=0.535 Sum_probs=143.3
Q ss_pred CCCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHhhCCc
Q 024044 111 HSVDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYILRLEGVE 190 (273)
Q Consensus 111 ~~~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL~L~G~~ 190 (273)
...|||++||||++|+||..+|+++||+||+++|||++++.++.|+..+.++++.||+||+||+||.+||.|+|.++|++
T Consensus 2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l~g~~ 81 (173)
T PRK00294 2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLALSGHE 81 (173)
T ss_pred CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHhcCCC
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHhHHHHH
Q 024044 191 VNEDETVSEPELLMEIMEIREAVEDAADSQT---LKEIQSQMQEKLIHWGNSFADAYQN-RNFDEARVCIRRMTYYHRVN 266 (273)
Q Consensus 191 ~~ee~~~~d~efLmeiME~rE~leea~d~~~---L~~l~~~~~~~i~~~~~~l~~af~~-~d~~~A~~~l~kLkYl~ki~ 266 (273)
+.++.+..||+|||++|||||+|+++.+.++ |+.+..++++..+.+...+.++|+. +||++|+.+|+||+||.||.
T Consensus 82 ~~~~~~~~d~~fLme~me~rE~le~~~~~~d~~~l~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~A~~~v~kl~f~~kl~ 161 (173)
T PRK00294 82 VPLEVTVHDPEFLLQQMQLREELEELQDEADLAGVATFKRRLKAAQDELNESFAACWDDAARREEAERLMRRMQFLDKLA 161 (173)
T ss_pred CCcccCCCCHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 8776677899999999999999999976544 5555556666666666666666765 45999999999999999999
Q ss_pred HHHHh
Q 024044 267 EEIAK 271 (273)
Q Consensus 267 ~eI~~ 271 (273)
++|++
T Consensus 162 ~ei~~ 166 (173)
T PRK00294 162 QEVRQ 166 (173)
T ss_pred HHHHH
Confidence 99975
No 6
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=100.00 E-value=8.4e-38 Score=267.52 Aligned_cols=148 Identities=26% Similarity=0.497 Sum_probs=140.0
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHhhCCcCCCC-CCCCCHHHH
Q 024044 125 YEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYILRLEGVEVNED-ETVSEPELL 203 (273)
Q Consensus 125 f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL~L~G~~~~ee-~~~~d~efL 203 (273)
|+||..+|+++||+||+++|||+|++.++.++..+.++|+.||+||+||+||.+||.|+|.|+|+++.++ .+..|++||
T Consensus 1 f~iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~g~~~~~e~~~~~d~~fL 80 (157)
T TIGR00714 1 YQLDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLHGIDLASEQHSVRDTAFL 80 (157)
T ss_pred CCCCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhcCCCCCcccCCCCCHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999999999998754 567899999
Q ss_pred HHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhHHHHHHHHHhh
Q 024044 204 MEIMEIREAVEDA---ADSQTLKEIQSQMQEKLIHWGNSFADAYQNRNFDEARVCIRRMTYYHRVNEEIAKK 272 (273)
Q Consensus 204 meiME~rE~leea---~d~~~L~~l~~~~~~~i~~~~~~l~~af~~~d~~~A~~~l~kLkYl~ki~~eI~~K 272 (273)
|++|||||++|++ .|.++|+.|..+++++++++.+.|+++|+.+||+.|+..++|||||.||.++|+++
T Consensus 81 me~Me~rE~lee~~~~~d~~~L~~l~~~~~~~~~~~~~~l~~~~~~~d~~~A~~~~~kLky~~kl~~~i~~~ 152 (157)
T TIGR00714 81 MEQLELREELDEIEQAKDEARLESFIKRVKKMFQTRHQLLVEQLDNQTWAAAADYTRKLRFLDKLRSSAEQL 152 (157)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999775 46788999999999999999999999999999999999999999999999999875
No 7
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.8e-37 Score=258.52 Aligned_cols=167 Identities=35% Similarity=0.627 Sum_probs=158.9
Q ss_pred CCCCCCCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHh
Q 024044 107 QPVDHSVDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYILRL 186 (273)
Q Consensus 107 qp~~~~~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL~L 186 (273)
+|.+...+||.+||....|.||++.|...|...++++|||+...+...+...|.++|+.||+||+||+||++||.|++.+
T Consensus 2 ~~~~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilkl 81 (168)
T KOG3192|consen 2 LKMGSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLKL 81 (168)
T ss_pred cccchHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 45666789999999999999999999999999999999999888888888899999999999999999999999999999
Q ss_pred hCCcCCCCCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhHHHHH
Q 024044 187 EGVEVNEDETVSEPELLMEIMEIREAVEDAADSQTLKEIQSQMQEKLIHWGNSFADAYQNRNFDEARVCIRRMTYYHRVN 266 (273)
Q Consensus 187 ~G~~~~ee~~~~d~efLmeiME~rE~leea~d~~~L~~l~~~~~~~i~~~~~~l~~af~~~d~~~A~~~l~kLkYl~ki~ 266 (273)
+|++..+++...||+|||||||++|+|.+++|+++|..+.++|+++|++|.++|+++|+.++|++|...+.+|+||+++.
T Consensus 82 ~g~e~~sne~stDpe~Lmevle~~E~IS~~~De~~l~~lk~q~q~ri~q~~~qlge~~esk~~~~Al~~i~rlrY~~~~~ 161 (168)
T KOG3192|consen 82 KGQEQTSNELSTDPEFLMEVLEYHEAISEMDDEEDLKQLKSQNQERIAQCKQQLGEAFESKKYDEALKKILRLRYWYELR 161 (168)
T ss_pred hCCCCchhhhccCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHH
Confidence 99998877666799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhC
Q 024044 267 EEIAKKL 273 (273)
Q Consensus 267 ~eI~~Kl 273 (273)
..|++||
T Consensus 162 k~v~kkL 168 (168)
T KOG3192|consen 162 KNVHKKL 168 (168)
T ss_pred HHHhhcC
Confidence 9999886
No 8
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=6.9e-22 Score=171.42 Aligned_cols=159 Identities=29% Similarity=0.484 Sum_probs=148.5
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHhh-CCcC
Q 024044 113 VDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYILRLE-GVEV 191 (273)
Q Consensus 113 ~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL~L~-G~~~ 191 (273)
.|||.+||+++.|.+|.+.++..|+.+++.+|||++...+..++..+.+.+..+|.||.||+||+.|+.|++.+. |...
T Consensus 1 ~~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal~~g~~~ 80 (174)
T COG1076 1 SDGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLALADGLDH 80 (174)
T ss_pred CCcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcccccc
Confidence 379999999999999999999999999999999999999999999999999999999999999999999999998 7765
Q ss_pred C-CCCCCCCHHHHHHHHHHHHHHHhcC---C-HHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhHHHHH
Q 024044 192 N-EDETVSEPELLMEIMEIREAVEDAA---D-SQTLKEIQSQMQEKLIHWGNSFADAYQNRNFDEARVCIRRMTYYHRVN 266 (273)
Q Consensus 192 ~-ee~~~~d~efLmeiME~rE~leea~---d-~~~L~~l~~~~~~~i~~~~~~l~~af~~~d~~~A~~~l~kLkYl~ki~ 266 (273)
. +..+..++.|+|++|+++|+++.+. + .+.+..+..++.....++.+.+..++++++|+.|.....+++|+.++.
T Consensus 81 ~~e~~~l~~~~~l~~~~~~~~e~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~ 160 (174)
T COG1076 81 AKERQTLRDIAFLLEQSELREELEEAREQLDREDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLK 160 (174)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHcccchhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHH
Confidence 5 4467788999999999999999985 2 577999999999999999999999999999999999999999999999
Q ss_pred HHHHh
Q 024044 267 EEIAK 271 (273)
Q Consensus 267 ~eI~~ 271 (273)
+++.+
T Consensus 161 ~~~~~ 165 (174)
T COG1076 161 EKLQE 165 (174)
T ss_pred HHHHH
Confidence 98875
No 9
>PF07743 HSCB_C: HSCB C-terminal oligomerisation domain; InterPro: IPR009073 This entry represents the C-terminal oligomerisation domain found in HscB (heat shock cognate protein B), which is also known as HSC20 (20K heat shock cognate protein). HscB acts as a co-chaperone to regulate the ATPase activity and peptide-binding specificity of the molecular chaperone HscA, also known as HSC66 (HSP70 class). HscB proteins contain two domains, an N-terminal J-domain, which is involved in interactions with HscA, connected by a short loop to the C-terminal oligomerisation domain; the two domains make contact through a hydrophobic interface. The core of the oligomerisation domain is thought to bind and target proteins to HscA and consists of an open, three-helical bundle []. HscB, along with HscA, has been shown to play a role in the biogenesis of iron-sulphur proteins.; GO: 0006457 protein folding; PDB: 1FPO_C 3BVO_B 3HHO_A 3UO2_B 3UO3_B.
Probab=99.75 E-value=1.5e-17 Score=126.20 Aligned_cols=74 Identities=32% Similarity=0.677 Sum_probs=69.8
Q ss_pred CCHHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhHHHHHHHHHh
Q 024044 198 SEPELLMEIMEIREAVEDA---ADSQTLKEIQSQMQEKLIHWGNSFADAYQNRNFDEARVCIRRMTYYHRVNEEIAK 271 (273)
Q Consensus 198 ~d~efLmeiME~rE~leea---~d~~~L~~l~~~~~~~i~~~~~~l~~af~~~d~~~A~~~l~kLkYl~ki~~eI~~ 271 (273)
.||+|||+||||||+|+++ ++.++|..|..+++++++++.+.|..+|+.+||++|+..++||+||.||.++|++
T Consensus 2 ~d~eFLme~mE~rE~le~~~~~~~~~~L~~l~~~~~~~~~~~~~~l~~~f~~~d~~~A~~~~~kLky~~kl~~~ik~ 78 (78)
T PF07743_consen 2 MDPEFLMEQMELREELEEAQNSDDEAELEELKKEIEERIKELIKELAEAFDAKDWEEAKEALRKLKYLQKLLEEIKQ 78 (78)
T ss_dssp S-HHHHHHHHHHHHHHHHHCCCTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5899999999999999999 7789999999999999999999999999999999999999999999999999985
No 10
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=8.5e-17 Score=154.01 Aligned_cols=67 Identities=31% Similarity=0.522 Sum_probs=60.5
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHH
Q 024044 112 SVDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYILR 185 (273)
Q Consensus 112 ~~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL~ 185 (273)
..|||++|||++++ +.++||+|||+|+++||||++.+.. .|++.|.+||+||++|+||.+||.|+.-
T Consensus 3 ~~dyYeiLGV~k~A--s~~EIKkAYRkLA~kyHPD~n~g~~-----~AeeKFKEI~eAYEVLsD~eKRa~YD~f 69 (371)
T COG0484 3 KRDYYEILGVSKDA--SEEEIKKAYRKLAKKYHPDRNPGDK-----EAEEKFKEINEAYEVLSDPEKRAAYDQF 69 (371)
T ss_pred ccchhhhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCCH-----HHHHHHHHHHHHHHHhCCHHHHHHhhcc
Confidence 57999999999977 9999999999999999999998633 3567889999999999999999999853
No 11
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.61 E-value=7.5e-16 Score=111.73 Aligned_cols=64 Identities=30% Similarity=0.500 Sum_probs=58.6
Q ss_pred CcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHH
Q 024044 114 DYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYI 183 (273)
Q Consensus 114 nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~Yl 183 (273)
|||++|||++.. +..+|+++|+++++.+|||++++.+ ..+.+.+..||+||++|+||.+|+.|+
T Consensus 1 ~~y~iLgl~~~~--~~~eik~~y~~l~~~~HPD~~~~~~----~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDA--SDEEIKKAYRRLSKQYHPDKNSGDE----AEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTS--SHHHHHHHHHHHHHHTSTTTGTSTH----HHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCC--CHHHHHHHHHhhhhccccccchhhh----hhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 689999999955 9999999999999999999998765 456788999999999999999999995
No 12
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=1.5e-15 Score=143.04 Aligned_cols=72 Identities=22% Similarity=0.398 Sum_probs=64.8
Q ss_pred CCCCCCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHh
Q 024044 108 PVDHSVDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYILRL 186 (273)
Q Consensus 108 p~~~~~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL~L 186 (273)
++...+|||+|||+++.+ +..+||++||+|++++||||+++.+. |.+.|..||.||+||+||.+|..|+-..
T Consensus 11 ~v~~~rDfYelLgV~k~A--sd~eIKkAYRKLALk~HPDkNpddp~-----A~e~F~~in~AYEVLsDpekRk~YD~~G 82 (336)
T KOG0713|consen 11 AVLAGRDFYELLGVPKNA--SDQEIKKAYRKLALKYHPDKNPDDPN-----ANEKFKEINAAYEVLSDPEKRKHYDTYG 82 (336)
T ss_pred hhhcCCCHHHHhCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCCHH-----HHHHHHHHHHHHHHhcCHHHHHHHHhhh
Confidence 444678999999999977 99999999999999999999998764 5678899999999999999999998754
No 13
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.51 E-value=1.9e-14 Score=138.15 Aligned_cols=66 Identities=27% Similarity=0.464 Sum_probs=59.0
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHH
Q 024044 112 SVDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYIL 184 (273)
Q Consensus 112 ~~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL 184 (273)
..|||++|||++.+ +.++|+++||+|+++||||++....+ |++.|.+||+||++|+||.+|+.|+-
T Consensus 2 ~~dyY~vLgv~~~A--s~~eIkkayrkla~k~HPD~~~~~~~-----a~~~f~~i~~AYevLsd~~kR~~YD~ 67 (369)
T PRK14288 2 ELSYYEILEVEKHS--NQETIKKSYRKLALKYHPDRNAGDKE-----AEEKFKLINEAYGVLSDEKKRALYDR 67 (369)
T ss_pred CCChHHHcCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCccH-----HHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 36999999999977 99999999999999999999865332 56678999999999999999999986
No 14
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.50 E-value=5.7e-14 Score=100.13 Aligned_cols=60 Identities=27% Similarity=0.536 Sum_probs=53.5
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcch
Q 024044 113 VDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLA 178 (273)
Q Consensus 113 ~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~ 178 (273)
.|||++|||+++ .+..+|+++|+++++.+|||++.+. ...+.+.+..||+||++|+||.+
T Consensus 1 ~~~y~vLgl~~~--~~~~~ik~ay~~l~~~~HPD~~~~~----~~~~~~~~~~l~~Ay~~L~~~~~ 60 (60)
T smart00271 1 TDYYEILGVPRD--ASLDEIKKAYRKLALKYHPDKNPGD----KEEAEEKFKEINEAYEVLSDPEK 60 (60)
T ss_pred CCHHHHcCCCCC--CCHHHHHHHHHHHHHHHCcCCCCCc----hHHHHHHHHHHHHHHHHHcCCCC
Confidence 489999999996 4999999999999999999999875 45677899999999999999853
No 15
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=7.8e-14 Score=135.87 Aligned_cols=75 Identities=25% Similarity=0.490 Sum_probs=65.9
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHH-hhCCc
Q 024044 112 SVDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYILR-LEGVE 190 (273)
Q Consensus 112 ~~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL~-L~G~~ 190 (273)
..+||.+|+||+.+ +.++|+++||++.+.|||||+.++ .+|+.|++.|..|..||++|+||.+||.|+.- ..|.+
T Consensus 8 e~e~Ya~LNlpkdA--t~eeI~~AYrr~~~lfHPDkh~dp--d~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~ 83 (546)
T KOG0718|consen 8 EIELYALLNLPKDA--TDEEIKKAYRRLSRLFHPDKHTDP--DQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLK 83 (546)
T ss_pred hhhHHHHhCCCccc--CHHHHHHHHHHHHHhcCCcccCCh--hHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcccc
Confidence 46899999999966 999999999999999999999765 45678999999999999999999999999863 33444
No 16
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.48 E-value=6.2e-14 Score=134.49 Aligned_cols=67 Identities=31% Similarity=0.550 Sum_probs=59.3
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHH
Q 024044 112 SVDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYIL 184 (273)
Q Consensus 112 ~~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL 184 (273)
..|||++|||++.+ +.++|+++||+|+++||||++... +..|.+.+++||+||++|+||.+|+.|+.
T Consensus 3 ~~d~y~~lgv~~~a--~~~eik~ayr~la~~~HPD~~~~~----~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~ 69 (369)
T PRK14282 3 KKDYYEILGVSRNA--TQEEIKRAYKRLVKEWHPDRHPEN----RKEAEQKFKEIQEAYEVLSDPQKRAMYDR 69 (369)
T ss_pred CCChHHhcCCCCCC--CHHHHHHHHHHHHHHHCCCCCccc----hhHHHHHHHHHHHHHHHhcChhhHHHHhh
Confidence 46999999999976 999999999999999999998542 12366789999999999999999999986
No 17
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.47 E-value=6.4e-14 Score=134.72 Aligned_cols=65 Identities=26% Similarity=0.423 Sum_probs=58.1
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHH
Q 024044 112 SVDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYIL 184 (273)
Q Consensus 112 ~~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL 184 (273)
..|||++|||++.+ +.++|+++||+|+++||||++... .|++.|.+||+||++|+||.+|+.|+-
T Consensus 3 ~~dyY~~Lgv~~~a--~~~eik~ayrkla~~~HPD~n~~~------~a~~~F~~i~~AyevLsD~~KR~~YD~ 67 (372)
T PRK14296 3 KKDYYEVLGVSKTA--SEQEIRQAYRKLAKQYHPDLNKSP------DAHDKMVEINEAADVLLDKDKRKQYDQ 67 (372)
T ss_pred CCCHHHhcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCc------hHHHHHHHHHHHHHHhcCHHHhhhhhh
Confidence 36999999999976 999999999999999999998532 255678999999999999999999986
No 18
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.46 E-value=8.6e-14 Score=133.78 Aligned_cols=66 Identities=26% Similarity=0.486 Sum_probs=58.9
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHH
Q 024044 112 SVDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYIL 184 (273)
Q Consensus 112 ~~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL 184 (273)
..|||++|||++++ +.++|+++||+|+++||||++.+.. .|.+.|++||+||++|+||.+|+.|+.
T Consensus 3 ~~d~y~~Lgv~~~a--~~~eik~ayr~la~~~HPD~~~~~~-----~a~~~f~~i~~Ay~vL~d~~kR~~YD~ 68 (372)
T PRK14286 3 ERSYYDILGVSKSA--NDEEIKSAYRKLAIKYHPDKNKGNK-----ESEEKFKEATEAYEILRDPKKRQAYDQ 68 (372)
T ss_pred CCCHHHhcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCch-----HHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 36999999999987 8899999999999999999986532 256788999999999999999999986
No 19
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.45 E-value=2e-13 Score=95.58 Aligned_cols=55 Identities=27% Similarity=0.521 Sum_probs=49.6
Q ss_pred CcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcC
Q 024044 114 DYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTN 175 (273)
Q Consensus 114 nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~d 175 (273)
|||++|||++.. +.++|+++|++|++.+|||++++. +.+.+.+..||+||++|+|
T Consensus 1 ~~y~vLgl~~~~--~~~~ik~~y~~l~~~~HPD~~~~~-----~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDA--SDEEIKKAYRKLALKYHPDKNPDD-----PEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCc-----HHHHHHHHHHHHHHHHhcC
Confidence 699999999855 999999999999999999999875 4567889999999999986
No 20
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.45 E-value=1.1e-13 Score=133.79 Aligned_cols=66 Identities=24% Similarity=0.449 Sum_probs=58.8
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHH
Q 024044 112 SVDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYIL 184 (273)
Q Consensus 112 ~~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL 184 (273)
..|||++|||++++ +..+|+++||+|+++||||++.... .+++.+++||+||++|+||.+|+.|+-
T Consensus 8 ~~d~y~~Lgv~~~a--~~~eik~ayr~la~~~HPD~~~~~~-----~a~~~f~~i~~Ay~vL~d~~~r~~yD~ 73 (389)
T PRK14295 8 EKDYYKVLGVPKDA--TEAEIKKAYRKLAREYHPDANKGDA-----KAEERFKEISEAYDVLSDEKKRKEYDE 73 (389)
T ss_pred ccCHHHhcCCCCCC--CHHHHHHHHHHHHHHHCCCcCCCch-----hHHHHHHHHHHHHHHHCchhhHHHHHH
Confidence 36999999999966 9999999999999999999986543 255678999999999999999999995
No 21
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.45 E-value=1e-13 Score=133.55 Aligned_cols=66 Identities=27% Similarity=0.519 Sum_probs=59.1
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHH
Q 024044 112 SVDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYIL 184 (273)
Q Consensus 112 ~~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL 184 (273)
..|||++|||++.+ +.++|+++||+|+++||||++.+.. .|++.+++||+||++|+||.+|+.|+.
T Consensus 3 ~~d~y~~Lgv~~~a--~~~~ik~ayr~la~~~HPD~~~~~~-----~a~~~f~~i~~Ay~vL~d~~~r~~yD~ 68 (380)
T PRK14297 3 SKDYYEVLGLEKGA--SDDEIKKAFRKLAIKYHPDKNKGNK-----EAEEKFKEINEAYQVLSDPQKKAQYDQ 68 (380)
T ss_pred CCChHHhhCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCcH-----HHHHHHHHHHHHHHHhcCHhhhCchhh
Confidence 36999999999977 8899999999999999999986542 256788999999999999999999986
No 22
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.45 E-value=1.1e-13 Score=133.06 Aligned_cols=66 Identities=24% Similarity=0.467 Sum_probs=58.9
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHH
Q 024044 112 SVDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYIL 184 (273)
Q Consensus 112 ~~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL 184 (273)
..|||++|||++++ +.++|+++||+|+++||||++++..+ +++.+++|++||++|+||.+|+.|+.
T Consensus 3 ~~~~y~~Lgv~~~a--~~~~ik~ayr~la~~~HPD~~~~~~~-----a~~~f~~i~~Ay~vL~d~~kr~~yD~ 68 (373)
T PRK14301 3 QRDYYEVLGVSRDA--SEDEIKKAYRKLALQYHPDRNPDNPE-----AEQKFKEAAEAYEVLRDAEKRARYDR 68 (373)
T ss_pred CCChHHhcCCCCCC--CHHHHHHHHHHHHHHhCCCcCCCChH-----HHHHHHHHHHHHHHhcchhhhhhhhh
Confidence 36999999999976 99999999999999999999876432 45678999999999999999999986
No 23
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.44 E-value=1.4e-13 Score=133.28 Aligned_cols=67 Identities=24% Similarity=0.410 Sum_probs=59.5
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHH
Q 024044 112 SVDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYILR 185 (273)
Q Consensus 112 ~~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL~ 185 (273)
..|||++|||++.+ +.++|+++||+|+++||||++.+.. .|.+.+.+|++||++|+||.+|+.|+-.
T Consensus 8 ~~Dyy~~Lgv~~~a--~~~eik~ayr~la~~~HPD~~~~~~-----~a~~~f~~i~~Ay~vLsD~~KR~~YD~~ 74 (392)
T PRK14279 8 EKDFYKELGVSSDA--SAEEIKKAYRKLARELHPDANPGDP-----AAEERFKAVSEAHDVLSDPAKRKEYDET 74 (392)
T ss_pred ccCHHHhcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCCh-----HHHHHHHHHHHHHHHhcchhhhhHHHHh
Confidence 47999999999977 9999999999999999999986532 2566889999999999999999999863
No 24
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=1.9e-13 Score=125.65 Aligned_cols=67 Identities=24% Similarity=0.473 Sum_probs=60.5
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHH
Q 024044 112 SVDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYILR 185 (273)
Q Consensus 112 ~~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL~ 185 (273)
..|+|++|||++.. +.++|+++||+|++++|||+.+..++ +.+.|.+||+||++|+||.+|-.|+-.
T Consensus 30 ~~~LYdVLgl~k~a--t~d~IKKaYR~L~~k~HPD~~gd~P~-----~~dkf~eIN~Ay~ILsD~~kR~~YD~~ 96 (279)
T KOG0716|consen 30 RLDLYDVLGLPKTA--TKDEIKKAYRKLALKYHPDKNGDNPE-----ATDKFKEINTAYAILSDPTKRNVYDEY 96 (279)
T ss_pred hhHHHHHhCCCccc--chHHHHHHHHHHHHHhCCCcCCCCch-----hHHHHHHHHHHHHHhcChhhhhhHHHh
Confidence 68999999999955 99999999999999999999988653 456789999999999999999999865
No 25
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.43 E-value=1.9e-13 Score=130.98 Aligned_cols=66 Identities=30% Similarity=0.545 Sum_probs=58.7
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHH
Q 024044 112 SVDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYIL 184 (273)
Q Consensus 112 ~~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL 184 (273)
..|||++|||++.+ +.++|+++||+|+++||||++.+..+ +.+.+..|++||++|+||.+|+.|+-
T Consensus 3 ~~d~y~~lgv~~~a--~~~eik~ayr~la~~~HPD~~~~~~~-----~~~~f~~~~~Ay~vL~d~~~r~~yD~ 68 (366)
T PRK14294 3 KRDYYEILGVTRDA--SEEEIKKSYRKLAMKYHPDRNPGDKE-----AEELFKEAAEAYEVLSDPKKRGIYDQ 68 (366)
T ss_pred CCChHHHhCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCchH-----HHHHHHHHHHHHHHhccHHHHHHHHh
Confidence 46999999999965 99999999999999999999875432 45678999999999999999999986
No 26
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.42 E-value=2e-13 Score=131.18 Aligned_cols=65 Identities=26% Similarity=0.544 Sum_probs=57.7
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHH
Q 024044 112 SVDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYIL 184 (273)
Q Consensus 112 ~~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL 184 (273)
..|||++|||++.+ +.++|+++||+|+++||||++... .+++.+++||+||++|+||.+|+.|+-
T Consensus 3 ~~d~y~~Lgv~~~a--~~~eik~ayr~la~~~HpD~~~~~------~~~~~f~~i~~Ay~~L~d~~kR~~YD~ 67 (371)
T PRK14287 3 KRDYYEVLGVDRNA--SVDEVKKAYRKLARKYHPDVNKAP------DAEDKFKEVKEAYDTLSDPQKKAHYDQ 67 (371)
T ss_pred CCCHHHhcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCh------hHHHHHHHHHHHHHHhCcHhHHHHHHh
Confidence 36999999999977 889999999999999999997532 245678999999999999999999986
No 27
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.42 E-value=2.2e-13 Score=131.25 Aligned_cols=65 Identities=31% Similarity=0.591 Sum_probs=58.1
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHH
Q 024044 112 SVDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYIL 184 (273)
Q Consensus 112 ~~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL 184 (273)
..|||++|||++.+ +.++|+++||+|+++||||++.++. +.+.+.+||+||++|+||.+|+.|+.
T Consensus 3 ~~d~y~~Lgv~~~a--~~~eik~ayr~la~~~HpD~~~~~~------a~~~f~~i~~Ay~vL~d~~kR~~YD~ 67 (380)
T PRK14276 3 NTEYYDRLGVSKDA--SQDEIKKAYRKLSKKYHPDINKEPG------AEEKYKEVQEAYETLSDPQKRAAYDQ 67 (380)
T ss_pred CCCHHHhhCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCcC------HHHHHHHHHHHHHHhcCHhhhhhHhh
Confidence 36999999999966 9999999999999999999987532 45578999999999999999999986
No 28
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.42 E-value=1.8e-13 Score=131.76 Aligned_cols=65 Identities=31% Similarity=0.502 Sum_probs=57.8
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHH
Q 024044 112 SVDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYIL 184 (273)
Q Consensus 112 ~~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL 184 (273)
..|||++|||++.+ +.++|+++||+|+++||||+++... +.+.+.+||+||++|+||.+|+.|+-
T Consensus 4 ~~d~y~iLgv~~~a--~~~eik~ayr~la~~~HPD~~~~~~------~~~~f~~i~~Ay~vL~d~~kR~~YD~ 68 (377)
T PRK14298 4 TRDYYEILGLSKDA--SVEDIKKAYRKLAMKYHPDKNKEPD------AEEKFKEISEAYAVLSDAEKRAQYDR 68 (377)
T ss_pred CCCHHHhhCCCCCC--CHHHHHHHHHHHHHHhCccccCChh------HHHHHHHHHHHHHHhcchHhhhhhhh
Confidence 36999999999966 9999999999999999999986422 44678999999999999999999986
No 29
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.42 E-value=2.1e-13 Score=131.40 Aligned_cols=66 Identities=27% Similarity=0.566 Sum_probs=58.6
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHH
Q 024044 112 SVDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYILR 185 (273)
Q Consensus 112 ~~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL~ 185 (273)
..|||++|||++.+ +.++|+++||+|+++||||++.++. +.+.+.+|++||++|+||.+|+.|+..
T Consensus 2 ~~d~Y~~Lgv~~~a--~~~~ik~ayr~la~~~HPD~~~~~~------~~~~f~~i~~Ay~vLsd~~kR~~YD~~ 67 (382)
T PRK14291 2 KKDYYEILGVSRNA--TQEEIKKAYRRLARKYHPDFNKNPE------AEEKFKEINEAYQVLSDPEKRKLYDQF 67 (382)
T ss_pred CCCHHHhhCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCcc------HHHHHHHHHHHHHHhcCHHHHHHHhhh
Confidence 36999999999977 9999999999999999999987522 445789999999999999999999863
No 30
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.42 E-value=2.3e-13 Score=130.91 Aligned_cols=64 Identities=28% Similarity=0.567 Sum_probs=57.7
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHH
Q 024044 113 VDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYIL 184 (273)
Q Consensus 113 ~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL 184 (273)
.|||++|||++.+ +.++|+++||+|+++||||++.... +.+.+.+||+||++|+||.+|+.|+.
T Consensus 4 ~~~y~iLgv~~~a--~~~eik~ayr~la~~~HpD~~~~~~------a~~~f~~i~~Ay~vL~d~~kr~~yD~ 67 (376)
T PRK14280 4 RDYYEVLGVSKSA--SKDEIKKAYRKLSKKYHPDINKEEG------ADEKFKEISEAYEVLSDDQKRAQYDQ 67 (376)
T ss_pred CChHHhhCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCcc------HHHHHHHHHHHHHHhccHhHHHHHHh
Confidence 6999999999976 9999999999999999999986432 45678999999999999999999986
No 31
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.42 E-value=2.3e-13 Score=131.33 Aligned_cols=66 Identities=32% Similarity=0.584 Sum_probs=58.9
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHH
Q 024044 112 SVDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYIL 184 (273)
Q Consensus 112 ~~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL 184 (273)
..|||++|||++.+ +.++|+++||+|+++||||++.+..+ +++.+++||+||++|+||.+|+.|+.
T Consensus 4 ~~d~y~~Lgv~~~a--~~~eik~ayr~la~~~HPD~~~~~~~-----a~~~f~~i~~Ay~vL~d~~kr~~yD~ 69 (386)
T PRK14277 4 KKDYYEILGVDRNA--TEEEIKKAYRRLAKKYHPDLNPGDKE-----AEQKFKEINEAYEILSDPQKRAQYDQ 69 (386)
T ss_pred CCCHHHhcCCCCCC--CHHHHHHHHHHHHHHHCCCcCCCchH-----HHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 36999999999965 99999999999999999999875432 45678999999999999999999986
No 32
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.42 E-value=2.6e-13 Score=130.11 Aligned_cols=66 Identities=27% Similarity=0.554 Sum_probs=58.8
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHH
Q 024044 112 SVDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYIL 184 (273)
Q Consensus 112 ~~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL 184 (273)
..|||++|||++.+ +.++|+++||+|+++||||++.+... |.+.+.+||+||++|+||.+|+.|+.
T Consensus 3 ~~d~y~iLgv~~~a--s~~eik~ayr~la~~~HPD~~~~~~~-----a~~~f~~i~~Ay~~L~d~~~r~~yd~ 68 (371)
T PRK10767 3 KRDYYEVLGVSRNA--SEDEIKKAYRKLAMKYHPDRNPGDKE-----AEEKFKEIKEAYEVLSDPQKRAAYDQ 68 (371)
T ss_pred CCChHHhcCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCcHH-----HHHHHHHHHHHHHHhcchhhhhHhhh
Confidence 36999999999966 99999999999999999999865322 56688999999999999999999986
No 33
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.41 E-value=2.6e-13 Score=131.43 Aligned_cols=65 Identities=26% Similarity=0.450 Sum_probs=58.6
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHH
Q 024044 113 VDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYIL 184 (273)
Q Consensus 113 ~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL 184 (273)
.|||++|||++.+ +..+|+++||+|++++|||++++.. .|++.+++||+||++|+||.+|+.|+.
T Consensus 3 ~d~y~iLgv~~~a--~~~eikkayr~la~~~HPD~~~~~~-----~a~~~f~~i~~Ay~vL~d~~~r~~yD~ 67 (397)
T PRK14281 3 RDYYEVLGVSRSA--DKDEIKKAYRKLALKYHPDKNPDNK-----EAEEHFKEVNEAYEVLSNDDKRRRYDQ 67 (397)
T ss_pred CChhhhcCCCCCC--CHHHHHHHHHHHHHHHCCCcCCCch-----HHHHHHHHHHHHHHHhhhhhhhhhhhh
Confidence 5999999999976 9999999999999999999987542 245788999999999999999999986
No 34
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.41 E-value=2.9e-13 Score=126.13 Aligned_cols=65 Identities=31% Similarity=0.541 Sum_probs=58.0
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHH
Q 024044 112 SVDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYIL 184 (273)
Q Consensus 112 ~~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL 184 (273)
..|||++|||++++ +.++|+++||+|++++|||++... .+.+.+.+||+||++|+||.+|+.|+.
T Consensus 3 ~~d~y~vLgv~~~a--~~~eik~ayr~la~~~HPD~~~~~------~~~~~f~~i~~Ay~~L~d~~kr~~yD~ 67 (291)
T PRK14299 3 YKDYYAILGVPKNA--SQDEIKKAFKKLARKYHPDVNKSP------GAEEKFKEINEAYTVLSDPEKRRIYDT 67 (291)
T ss_pred CCCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCh------hHHHHHHHHHHHHHHhcCHHHHHHHHh
Confidence 36999999999966 999999999999999999998632 245678999999999999999999986
No 35
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.41 E-value=3.3e-13 Score=130.48 Aligned_cols=65 Identities=29% Similarity=0.508 Sum_probs=58.2
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHH
Q 024044 113 VDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYIL 184 (273)
Q Consensus 113 ~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL 184 (273)
.|||++|||++.+ +.++|+++||+|+++||||++.+... +++.++.||+||++|+||.+|+.|+.
T Consensus 1 ~d~y~iLgv~~~a--~~~eikkayr~la~~~HPD~~~~~~~-----a~~~f~~i~~Ay~vL~d~~kR~~YD~ 65 (391)
T PRK14284 1 MDYYTILGVSKTA--SPEEIKKAYRKLAVKYHPDKNPGDAE-----AEKRFKEVSEAYEVLSDAQKRESYDR 65 (391)
T ss_pred CCHHHhcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCchH-----HHHHHHHHHHHHHHhcCHHHHHHHHh
Confidence 4899999999965 99999999999999999999875432 45678999999999999999999986
No 36
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.40 E-value=4.3e-13 Score=129.20 Aligned_cols=64 Identities=27% Similarity=0.538 Sum_probs=57.8
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHH
Q 024044 113 VDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYIL 184 (273)
Q Consensus 113 ~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL 184 (273)
.|||++|||++.+ +.++|+++||+|+++||||++.. ..+++.+..||+||++|+||.+|+.|+.
T Consensus 3 ~d~y~iLgv~~~a--~~~eik~ayr~la~~~hpD~~~~------~~a~~~f~~i~~Ay~vL~d~~~r~~YD~ 66 (378)
T PRK14278 3 RDYYGLLGVSRNA--SDAEIKRAYRKLARELHPDVNPD------EEAQEKFKEISVAYEVLSDPEKRRIVDL 66 (378)
T ss_pred CCcceecCCCCCC--CHHHHHHHHHHHHHHHCCCCCCc------HHHHHHHHHHHHHHHHhchhhhhhhhhc
Confidence 5899999999976 99999999999999999999863 1256788999999999999999999986
No 37
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.39 E-value=4.7e-13 Score=128.41 Aligned_cols=65 Identities=29% Similarity=0.460 Sum_probs=58.5
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHH
Q 024044 113 VDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYIL 184 (273)
Q Consensus 113 ~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL 184 (273)
.|||++|||++.+ +.++|+++||+|+++||||++.+..+ +.+.+.+|++||++|+||.+|+.|+.
T Consensus 3 ~d~y~iLgv~~~a--~~~eIk~ayr~la~~~HPD~~~~~~~-----a~~~f~~i~~Ay~vL~d~~kr~~yd~ 67 (365)
T PRK14285 3 RDYYEILGLSKGA--SKDEIKKAYRKIAIKYHPDKNKGNKE-----AESIFKEATEAYEVLIDDNKRAQYDR 67 (365)
T ss_pred CCHHHhcCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCCHH-----HHHHHHHHHHHHHHHcCcchhHHHHh
Confidence 6999999999976 99999999999999999999865432 45688999999999999999999986
No 38
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.39 E-value=4.5e-13 Score=128.44 Aligned_cols=66 Identities=29% Similarity=0.568 Sum_probs=58.9
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHH
Q 024044 113 VDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYIL 184 (273)
Q Consensus 113 ~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL 184 (273)
.|||++|||++.+ +..+|+++||+|++++|||+++.. ++.|.+.++.||+||++|+||.+|+.|+.
T Consensus 3 ~d~y~vLgv~~~a--~~~eik~ayr~la~~~HPD~~~~~----~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~ 68 (365)
T PRK14290 3 KDYYKILGVDRNA--SQEDIKKAFRELAKKWHPDLHPGN----KAEAEEKFKEISEAYEVLSDPQKRRQYDQ 68 (365)
T ss_pred CChhhhcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCc----hhHHHHHHHHHHHHHHHhcChhhhhhhcc
Confidence 5999999999965 999999999999999999997643 22467789999999999999999999986
No 39
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.39 E-value=5.3e-12 Score=132.05 Aligned_cols=83 Identities=14% Similarity=0.256 Sum_probs=67.2
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHhhCCcC
Q 024044 112 SVDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYILRLEGVEV 191 (273)
Q Consensus 112 ~~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL~L~G~~~ 191 (273)
..+||++|||++.+ +..+|+++||+|++++|||++++. .+.+.|..|++||++|+||.+|+.|+. +|...
T Consensus 572 d~dYYdILGVs~dA--S~~EIKKAYRKLAlkyHPDKN~~~------~A~ekFq~I~EAYeVLSDp~kRk~YD~--~G~~G 641 (1136)
T PTZ00341 572 DTLFYDILGVGVNA--DMKEISERYFKLAENYYPPKRSGN------EGFHKFKKINEAYQILGDIDKKKMYNK--FGYDG 641 (1136)
T ss_pred CCChHHHcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCc------hHHHHHHHHHHHHHHhCCHHHHHHHhh--ccccc
Confidence 47999999999977 999999999999999999998753 155689999999999999999999986 44332
Q ss_pred CCCCCCCCHHHHH
Q 024044 192 NEDETVSEPELLM 204 (273)
Q Consensus 192 ~ee~~~~d~efLm 204 (273)
..+....||.+..
T Consensus 642 l~~~~~iDP~~Ff 654 (1136)
T PTZ00341 642 IKGVNFIHPSIFY 654 (1136)
T ss_pred cCCCCccCHHHHH
Confidence 2234566775433
No 40
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.39 E-value=3.7e-13 Score=131.47 Aligned_cols=62 Identities=23% Similarity=0.426 Sum_probs=56.3
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHH
Q 024044 112 SVDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYIL 184 (273)
Q Consensus 112 ~~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL 184 (273)
..|||++|||++++ +.++|+++||+|+++||||++.+ .+.|.+||+||++|+||.+|+.|+.
T Consensus 27 ~~d~Y~vLGV~~~A--s~~eIKkAYrkla~k~HPDk~~~---------~e~F~~i~~AYevLsD~~kR~~YD~ 88 (421)
T PTZ00037 27 NEKLYEVLNLSKDC--TTSEIKKAYRKLAIKHHPDKGGD---------PEKFKEISRAYEVLSDPEKRKIYDE 88 (421)
T ss_pred chhHHHHcCCCCCC--CHHHHHHHHHHHHHHHCCCCCch---------HHHHHHHHHHHHHhccHHHHHHHhh
Confidence 46999999999976 99999999999999999999642 2578999999999999999999986
No 41
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.39 E-value=5.7e-13 Score=128.07 Aligned_cols=64 Identities=27% Similarity=0.578 Sum_probs=57.5
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHH
Q 024044 113 VDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYIL 184 (273)
Q Consensus 113 ~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL 184 (273)
.|||++|||++.+ +..+|+++||+|++++|||++.... +.+.+..||+||++|+||.+|+.|+.
T Consensus 3 ~d~y~vLgv~~~a--~~~eik~ayr~la~~~HPD~~~~~~------a~~~f~~i~~Ay~vL~~~~~R~~yd~ 66 (374)
T PRK14293 3 ADYYEILGVSRDA--DKDELKRAYRRLARKYHPDVNKEPG------AEDRFKEINRAYEVLSDPETRARYDQ 66 (374)
T ss_pred CChhhhcCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCcC------HHHHHHHHHHHHHHHhchHHHHHHhh
Confidence 5999999999955 9999999999999999999986532 44678999999999999999999986
No 42
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.38 E-value=5.6e-13 Score=128.09 Aligned_cols=64 Identities=31% Similarity=0.497 Sum_probs=57.4
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHH
Q 024044 113 VDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYIL 184 (273)
Q Consensus 113 ~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL 184 (273)
.|||++|||++.+ +.++|+++||+|++++|||++.... +++.+.+||+||++|+||.+|+.|+.
T Consensus 3 ~~~y~iLgv~~~a--s~~eik~ayr~la~~~HPD~~~~~~------~~~~f~~i~~Ay~~L~d~~~r~~yD~ 66 (372)
T PRK14300 3 QDYYQILGVSKTA--SQADLKKAYLKLAKQYHPDTTDAKD------AEKKFKEINAAYDVLKDEQKRAAYDR 66 (372)
T ss_pred CChHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCcC------HHHHHHHHHHHHHHhhhHhHhhHHHh
Confidence 6999999999966 9999999999999999999986422 44578999999999999999999986
No 43
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.37 E-value=6.4e-13 Score=127.92 Aligned_cols=65 Identities=23% Similarity=0.496 Sum_probs=58.5
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHH
Q 024044 112 SVDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYIL 184 (273)
Q Consensus 112 ~~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL 184 (273)
..|||++|||++.+ +.++|+++||+|+++||||++... .|.+.+..|++||++|+||.+|+.|+.
T Consensus 4 ~~d~y~~Lgv~~~a--~~~eik~ayr~la~~~HPD~~~~~------~a~~~f~~i~~Ay~~Lsd~~kR~~YD~ 68 (378)
T PRK14283 4 KRDYYEVLGVDRNA--DKKEIKKAYRKLARKYHPDVSEEE------GAEEKFKEISEAYAVLSDDEKRQRYDQ 68 (378)
T ss_pred cCChHHhhCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCc------cHHHHHHHHHHHHHHhchhHHHHHHhh
Confidence 46999999999966 999999999999999999997641 256788999999999999999999986
No 44
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.37 E-value=6.7e-13 Score=127.32 Aligned_cols=64 Identities=28% Similarity=0.527 Sum_probs=57.8
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHH
Q 024044 113 VDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYIL 184 (273)
Q Consensus 113 ~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL 184 (273)
+|||++|||++.+ +.++|+++||+|++++|||++... .+.+.+..||+||++|+||.+|+.|+.
T Consensus 2 ~d~y~~Lgv~~~a--~~~~ik~ayr~l~~~~hpD~~~~~------~a~~~~~~i~~Ay~vL~d~~~r~~yd~ 65 (371)
T PRK14292 2 MDYYELLGVSRTA--SADEIKSAYRKLALKYHPDRNKEK------GAAEKFAQINEAYAVLSDAEKRAHYDR 65 (371)
T ss_pred CChHHHcCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCh------hHHHHHHHHHHHHHHhcchhhhhhHhh
Confidence 5899999999977 999999999999999999998642 245678999999999999999999986
No 45
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.36 E-value=6.5e-13 Score=126.54 Aligned_cols=63 Identities=35% Similarity=0.599 Sum_probs=56.4
Q ss_pred CcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHH
Q 024044 114 DYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYIL 184 (273)
Q Consensus 114 nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL 184 (273)
|||++|||++.+ +.++|+++||+|++++|||+++.. .+.+.+.+||+||++|+||.+|+.|+.
T Consensus 1 d~y~~Lgv~~~a--~~~~ik~ayr~la~~~HPD~~~~~------~~~~~f~~i~~Ay~vL~d~~~R~~yd~ 63 (354)
T TIGR02349 1 DYYEILGVSKDA--SEEEIKKAYRKLAKKYHPDRNKDK------EAEEKFKEINEAYEVLSDPEKRAQYDQ 63 (354)
T ss_pred ChHHhCCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCc------cHHHHHHHHHHHHHHhhChHHHHhhhh
Confidence 799999999966 999999999999999999998622 245678999999999999999999976
No 46
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=6.7e-12 Score=113.54 Aligned_cols=108 Identities=21% Similarity=0.406 Sum_probs=79.9
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHhhCCcC
Q 024044 112 SVDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYILRLEGVEV 191 (273)
Q Consensus 112 ~~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL~L~G~~~ 191 (273)
..|+|+||||..+. +..+|+++||+|++++|||+.. ++.+..+.+.|+.|++||++|+|..+|+.|+- .|.--
T Consensus 13 ~~d~YevLGVer~a--~~~eIrkAY~klal~~HPDk~~---eed~~ea~~kFq~l~k~y~iLsDeekR~~YDe--tG~id 85 (264)
T KOG0719|consen 13 KKDLYEVLGVERDA--TDKEIRKAYHKLALRLHPDKNH---EEDKVEATEKFQQLQKAYQILSDEEKRAVYDE--TGSID 85 (264)
T ss_pred ccCHHHHhhhcccC--CHHHHHHHHHHHHHHhCCCcch---hhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhc--cCCCC
Confidence 46999999999977 9999999999999999999986 55667789999999999999999999999964 23211
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 024044 192 NEDETVSEPELLMEIMEIREAVEDAADSQTLKEIQSQMQE 231 (273)
Q Consensus 192 ~ee~~~~d~efLmeiME~rE~leea~d~~~L~~l~~~~~~ 231 (273)
++. .+.+..-.|+--.|.--.+.++|+++....+.
T Consensus 86 d~~-----~d~~~~~~e~~~~iyk~VteedIeef~a~Y~g 120 (264)
T KOG0719|consen 86 DES-----GDIDEDWLEFWRAIYKKVTEEDIEEFEANYQG 120 (264)
T ss_pred Ccc-----chhhhHHHHHHHHHHhhcccccHHHHHHHhcc
Confidence 211 22333344444444444455666666666554
No 47
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.36 E-value=8e-13 Score=123.87 Aligned_cols=65 Identities=25% Similarity=0.410 Sum_probs=57.9
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHH
Q 024044 113 VDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYILR 185 (273)
Q Consensus 113 ~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL~ 185 (273)
.|||++|||++.+ +.++|+++||+|++++|||++... .+.+.+++||+||++|+||.+|+.|+..
T Consensus 4 ~d~y~~Lgv~~~a--~~~eik~ayr~la~k~HPD~~~~~------~~~~~f~~i~~Ay~~L~~~~kr~~yD~~ 68 (306)
T PRK10266 4 KDYYAIMGVKPTD--DLKTIKTAYRRLARKYHPDVSKEP------DAEARFKEVAEAWEVLSDEQRRAEYDQL 68 (306)
T ss_pred CChHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCc------cHHHHHHHHHHHHHHhhhHHHHHHHHHh
Confidence 6999999999976 899999999999999999996532 3567889999999999999999999863
No 48
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=9.7e-13 Score=124.82 Aligned_cols=64 Identities=25% Similarity=0.477 Sum_probs=58.5
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHH
Q 024044 112 SVDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYILR 185 (273)
Q Consensus 112 ~~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL~ 185 (273)
...||++|||++.+ +..+|+++||+|+++||||++++ +.+.|.+|..||++|+||.+|..|+..
T Consensus 3 ~~~~y~il~v~~~A--s~~eikkayrkla~k~HpDkn~~--------~~ekfkei~~AyevLsd~ekr~~yD~~ 66 (337)
T KOG0712|consen 3 NTKLYDILGVSPDA--SEEEIKKAYRKLALKYHPDKNPD--------AGEKFKEISQAYEVLSDPEKREIYDQY 66 (337)
T ss_pred ccccceeeccCCCc--CHHHHHHHHHHHHHHhCCCCCcc--------HHHHHHHHHHHHHHhcCHHHHHHHHhh
Confidence 46799999999966 99999999999999999999987 456789999999999999999999764
No 49
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.35 E-value=1.2e-12 Score=126.22 Aligned_cols=66 Identities=27% Similarity=0.468 Sum_probs=59.1
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHH
Q 024044 112 SVDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYIL 184 (273)
Q Consensus 112 ~~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL 184 (273)
..|||++|||++.+ +.++|+++||+|+++||||++++..+ +.+.+++|++||++|+||.+|+.|+.
T Consensus 4 ~~~~y~~Lgv~~~a--~~~eik~ayr~la~~~HpD~~~~~~~-----a~~~f~~i~~Ay~~L~d~~~R~~yD~ 69 (386)
T PRK14289 4 KRDYYEVLGVSKTA--TVDEIKKAYRKKAIQYHPDKNPGDKE-----AEEKFKEAAEAYDVLSDPDKRSRYDQ 69 (386)
T ss_pred cCCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCChH-----HHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 46999999999977 88999999999999999999875432 56678999999999999999999986
No 50
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=4.4e-12 Score=118.44 Aligned_cols=69 Identities=22% Similarity=0.413 Sum_probs=62.4
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHhhC
Q 024044 112 SVDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYILRLEG 188 (273)
Q Consensus 112 ~~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL~L~G 188 (273)
..|||++||++++. +..+|+.+|++|+|+||||.+..+ .+.+.|..|.+||++|+|+.+|.+|+..+.+
T Consensus 42 ~~d~Y~vLgv~~~A--t~~EIK~Af~~LaKkyHPD~n~~~------~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~ 110 (288)
T KOG0715|consen 42 KEDYYKVLGVSRNA--TLSEIKSAFRKLAKKYHPDVNKDK------EASKKFKEISEAYEILSDEEKRQEYDVYGLE 110 (288)
T ss_pred CcchhhhhCcCCCC--CHHHHHHHHHHHHHhhCCCCCCCc------chhhHHHHHHHHHHHhcCHHHHHHHHHhhhh
Confidence 34999999999987 999999999999999999999876 3567889999999999999999999987764
No 51
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=1.8e-11 Score=114.66 Aligned_cols=69 Identities=25% Similarity=0.441 Sum_probs=63.1
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHhh
Q 024044 112 SVDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYILRLE 187 (273)
Q Consensus 112 ~~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL~L~ 187 (273)
..|||+|||+.+.. +..+|+++||..++.+|||++++.+. |.+.|..+.+||++|+||..|+.|+--+.
T Consensus 4 ~~dyY~lLgi~~~a--t~~eIkKaYr~kaL~~HPDKNp~dP~-----A~ekFq~L~eAy~VL~D~~~R~~YDk~~k 72 (296)
T KOG0691|consen 4 DTDYYDLLGISEDA--TDAEIKKAYRKKALQYHPDKNPGDPQ-----AAEKFQELSEAYEVLSDEESRAAYDKLRK 72 (296)
T ss_pred cchHHHHhCCCCCC--CHHHHHHHHHHHHHhcCCCCCCCChH-----HHHHHHHHHHHHHHhcCHHHHHHHHHHhh
Confidence 57999999999966 99999999999999999999998875 66789999999999999999999987654
No 52
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.26 E-value=1.5e-11 Score=126.17 Aligned_cols=66 Identities=26% Similarity=0.427 Sum_probs=58.2
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHh
Q 024044 113 VDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYILRL 186 (273)
Q Consensus 113 ~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL~L 186 (273)
.|||++|||++.+ +..+|+++||+|++++|||++++. .+.+.+..||+||++|+||.+|+.|+...
T Consensus 2 ~DYYeVLGVs~dA--S~eEIKKAYRKLAKKyHPDKn~~~------eAeekFqeINEAYEVLSDP~KRa~YD~fG 67 (871)
T TIGR03835 2 RDYYEVLGIDRDA--DEQEIKKAFRKLAKKYHPDRNKAP------DAASIFAEINEANDVLSNPKKRANYDKYG 67 (871)
T ss_pred CChhHhcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCh------hHHHHHHHHHHHHHHhCCHHHHHHHhhhc
Confidence 5899999999965 999999999999999999998762 23456789999999999999999998754
No 53
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=1.1e-11 Score=105.67 Aligned_cols=68 Identities=28% Similarity=0.454 Sum_probs=61.6
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHH
Q 024044 112 SVDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYILR 185 (273)
Q Consensus 112 ~~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL~ 185 (273)
..+||++|||++.. +..+|+++||++++++|||++..... .+.+.+..||+||.+|+||..|+.|+..
T Consensus 5 ~~~~y~iLgv~~~a--s~~eik~ayrkla~~~HPD~~~~~~~----~a~~~f~~i~~Ay~vLsd~~~r~~yd~~ 72 (237)
T COG2214 5 LLDYYEILGVPPNA--SLEEIKKAYRKLALKYHPDRNPGDPK----VAEEKFKEINEAYEILSDPERRAEYDKI 72 (237)
T ss_pred hhhHHHHhCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCchh----HHHHHHHHHHHHHHHhhCHHHHHHhhhh
Confidence 57899999999866 99999999999999999999987654 4677889999999999999999999873
No 54
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=1.3e-11 Score=120.40 Aligned_cols=69 Identities=23% Similarity=0.447 Sum_probs=61.0
Q ss_pred CCCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHH
Q 024044 111 HSVDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYILR 185 (273)
Q Consensus 111 ~~~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL~ 185 (273)
..+.||++|||.... |..+|+++||+|++++|||+++..- +.+.++|++|+.||++|+||..|+=|+-.
T Consensus 6 ~~~c~YE~L~v~~~a--~d~eik~~YRklALq~HPDknpd~i----eeat~~F~~i~aAYeVLSdp~eR~wyd~h 74 (508)
T KOG0717|consen 6 KKRCYYEVLGVERDA--DDDEIKKNYRKLALQYHPDKNPDRI----EEATQQFQLIQAAYEVLSDPQERAWYDSH 74 (508)
T ss_pred hhhHHHHHhcccccC--CHHHHHHHHHHHHHhhCCCCCCccH----HHHHHHHHHHHHHHHHhcChHhhhhHHHH
Confidence 456899999999966 9999999999999999999965432 34789999999999999999999999864
No 55
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=5.4e-11 Score=106.60 Aligned_cols=70 Identities=23% Similarity=0.373 Sum_probs=60.3
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHhhCCc
Q 024044 112 SVDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYILRLEGVE 190 (273)
Q Consensus 112 ~~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL~L~G~~ 190 (273)
..|+|++|||+++. +..+||++||+|..++||||.+..++.| +.+..|++||+.|.|+.+|..|.. .|.+
T Consensus 98 ~fDPyEILGl~pga--s~~eIKkaYR~LSik~HPDK~~~~~~~e-----~~~~~I~KAY~aLTD~~sreN~ek--YG~P 167 (230)
T KOG0721|consen 98 KFDPYEILGLDPGA--SEKEIKKAYRRLSIKYHPDKQPPEEGDE-----EFFEAIAKAYQALTDKKSRENWEK--YGNP 167 (230)
T ss_pred cCCcHHhhCCCCCC--CHHHHHHHHHHhhhhhCCCcCCCcchhH-----HHHHHHHHHHHHhcchhhHHHHHH--hCCC
Confidence 56999999999977 9999999999999999999987754433 456899999999999999999965 4443
No 56
>PHA03102 Small T antigen; Reviewed
Probab=99.08 E-value=1.8e-10 Score=98.79 Aligned_cols=63 Identities=13% Similarity=0.131 Sum_probs=53.9
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHH
Q 024044 113 VDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYIL 184 (273)
Q Consensus 113 ~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL 184 (273)
..++++|||++++-.+..+|+++||++++++|||+.++ .+.++.||+||++|+|+.+|+.|+.
T Consensus 5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~---------~e~~k~in~Ay~~L~d~~~r~~yd~ 67 (153)
T PHA03102 5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGD---------EEKMKELNTLYKKFRESVKSLRDLD 67 (153)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCch---------hHHHHHHHHHHHHHhhHHHhccccc
Confidence 35789999999654489999999999999999999532 1356899999999999999999954
No 57
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=98.98 E-value=7.7e-10 Score=102.35 Aligned_cols=63 Identities=19% Similarity=0.401 Sum_probs=56.0
Q ss_pred CCCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCC--CHHHHHHHHHHHHHHHHHHHHhcC
Q 024044 111 HSVDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSK--SEKEREYAAEQSGRVIEAYRTLTN 175 (273)
Q Consensus 111 ~~~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~--~~~E~~~a~~~s~~IN~AY~tL~d 175 (273)
...++|++||++++. +.++|+++||+|.+++|||++.++ ++.+++.+.+.+..||+||++|+.
T Consensus 198 ~~~~ay~vLgv~~~a--s~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 198 TLEDAYKVLGVSESD--DDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred cHHhHHHHcCCCCCC--CHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 347999999999965 999999999999999999998754 466678899999999999999985
No 58
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.92 E-value=1.9e-09 Score=103.13 Aligned_cols=69 Identities=22% Similarity=0.444 Sum_probs=64.1
Q ss_pred CCCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHH
Q 024044 111 HSVDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYI 183 (273)
Q Consensus 111 ~~~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~Yl 183 (273)
...|||.|||+.+++ ...+|.++||+++.++|||.|.+ ++|+.-|+..|.-|..|-++|+||.+|..++
T Consensus 392 ~kRDYYKILGVkRnA--sKqEI~KAYRKlAqkWHPDNFqd--EeEKKkAEKKFIDIAAAKEVLsd~EkRrqFD 460 (504)
T KOG0624|consen 392 GKRDYYKILGVKRNA--SKQEITKAYRKLAQKWHPDNFQD--EEEKKKAEKKFIDIAAAKEVLSDPEKRRQFD 460 (504)
T ss_pred ccchHHHHhhhcccc--cHHHHHHHHHHHHHhcCCccccC--HHHHHHHHHhhhhHHHHHHhhcCHHHHhhcc
Confidence 467999999999977 99999999999999999999976 6778889999999999999999999999996
No 59
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=2.4e-09 Score=104.61 Aligned_cols=71 Identities=21% Similarity=0.329 Sum_probs=62.6
Q ss_pred CCCCCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHhh
Q 024044 109 VDHSVDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYILRLE 187 (273)
Q Consensus 109 ~~~~~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL~L~ 187 (273)
.....|+|++|||+. ++|.++||+.||+++-.+||||+..+ .|++.+..|.-||++|+|+.+|-+|++++.
T Consensus 231 e~~~~daYsvlGl~~--d~sd~~lKk~Yrk~A~LVhPDKn~~~------~A~Eafk~Lq~Afevig~~~kR~eYd~e~~ 301 (490)
T KOG0720|consen 231 ELNILDAYSALGLPS--DCSDADLKKNYRKKAMLVHPDKNMIP------RAEEAFKKLQVAFEVIGDSVKRKEYDLELK 301 (490)
T ss_pred hhcCCCchhhcCCCC--CCCHHHHHHHHHhhceEeCCCccCCh------hHHHHHHHHHHHHHHhcchhhhhHHHHHHH
Confidence 334789999999997 67999999999999999999999743 356788999999999999999999988763
No 60
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=2.1e-09 Score=98.68 Aligned_cols=68 Identities=19% Similarity=0.419 Sum_probs=61.6
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHhh
Q 024044 112 SVDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYILRLE 187 (273)
Q Consensus 112 ~~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL~L~ 187 (273)
..|=|++||+.+.. +..+|.++||+|++++|||++.++..+ ..|..|..||++|+|...|+.|+..+.
T Consensus 32 ~enCYdVLgV~Rea--~KseIakAYRqLARrhHPDr~r~~e~k------~~F~~iAtayeilkd~e~rt~ydyald 99 (329)
T KOG0722|consen 32 AENCYDVLGVAREA--NKSEIAKAYRQLARRHHPDRNRDPESK------KLFVKIATAYEILKDNETRTQYDYALD 99 (329)
T ss_pred chhHHHHhhhhhhc--cHHHHHHHHHHHHHHhCCcccCCchhh------hhhhhhhcccccccchhhHHhHHHHhc
Confidence 47899999999977 999999999999999999999887655 567999999999999999999988774
No 61
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=98.71 E-value=2.3e-08 Score=82.22 Aligned_cols=52 Identities=23% Similarity=0.263 Sum_probs=44.0
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhc
Q 024044 112 SVDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLT 174 (273)
Q Consensus 112 ~~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~ 174 (273)
..++|++|||++++ +.++|+++||+|.+++|||+.. + . +.++.||+||++|.
T Consensus 64 ~~eAy~ILGv~~~A--s~~eIkkaYRrLa~~~HPDkgG--s-~------~~~~kIneAyevL~ 115 (116)
T PTZ00100 64 KSEAYKILNISPTA--SKERIREAHKQLMLRNHPDNGG--S-T------YIASKVNEAKDLLL 115 (116)
T ss_pred HHHHHHHcCCCCCC--CHHHHHHHHHHHHHHhCCCCCC--C-H------HHHHHHHHHHHHHh
Confidence 46899999999976 8999999999999999999842 2 1 23478999999985
No 62
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=98.69 E-value=2.2e-08 Score=98.12 Aligned_cols=72 Identities=21% Similarity=0.375 Sum_probs=67.5
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHH
Q 024044 112 SVDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYILR 185 (273)
Q Consensus 112 ~~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL~ 185 (273)
..|+||+||+..+. ...+|+++||.|.-++||||.+.--+.++..-++....|++||..|.|...|..|++.
T Consensus 97 ~fDPyEILGI~~~t--s~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~y 168 (610)
T COG5407 97 GFDPYEILGIDQDT--SERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNY 168 (610)
T ss_pred CCChHHhhcccCCC--cHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhc
Confidence 57999999999976 8899999999999999999999888888988999999999999999999999999875
No 63
>PHA02624 large T antigen; Provisional
Probab=98.60 E-value=4.3e-08 Score=99.67 Aligned_cols=63 Identities=21% Similarity=0.185 Sum_probs=53.6
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHH
Q 024044 112 SVDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYI 183 (273)
Q Consensus 112 ~~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~Yl 183 (273)
..++|++|||++++=-+..+|+++||++++++|||+.++ .+.+..||+||++|+|+.+|+.|.
T Consensus 10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGd---------eekfk~Ln~AYevL~d~~k~~r~~ 72 (647)
T PHA02624 10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGD---------EEKMKRLNSLYKKLQEGVKSARQS 72 (647)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCc---------HHHHHHHHHHHHHHhcHHHhhhcc
Confidence 458999999999432278999999999999999999432 246789999999999999999994
No 64
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=3.8e-08 Score=87.95 Aligned_cols=69 Identities=29% Similarity=0.513 Sum_probs=56.7
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHh
Q 024044 112 SVDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYILRL 186 (273)
Q Consensus 112 ~~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL~L 186 (273)
..|||.+||+++.+ ...+|+++|+.+++++|||++... ...+...+.+|++||++|+||.+|..|+..-
T Consensus 2 ~~d~~~~l~i~~~a--s~~~i~ka~~~~a~~~hpdk~~~~----~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~ 70 (306)
T KOG0714|consen 2 GKDYYKILGIARSA--SEEDIKKAYRKLALKYHPDKNPSP----KEVAEAKFKEIAEAYEVLSDPKKRKIYDQYG 70 (306)
T ss_pred cccHHHHhCccccc--cHHHHHHHHHHHHHhhCCCCCCCc----hhhHHHHHhhhhccccccCCHHHhhhccccC
Confidence 46899999999766 555999999999999999995443 2234447888999999999999999997643
No 65
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=9.7e-08 Score=92.95 Aligned_cols=72 Identities=22% Similarity=0.460 Sum_probs=63.0
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHhhCCcC
Q 024044 112 SVDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYILRLEGVEV 191 (273)
Q Consensus 112 ~~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL~L~G~~~ 191 (273)
..|||.+||+.... ...+|+++||+++..+|||++++. |..++..|..|-+||.+|+||.+|.+|+- |.++
T Consensus 372 Rkd~ykilGi~~~a--s~~eikkayrk~AL~~Hpd~~ags----q~eaE~kFkevgeAy~il~d~~kr~r~ds---g~dl 442 (486)
T KOG0550|consen 372 RKDWYKILGISRNA--SDDEIKKAYRKLALVHHPDKNAGS----QKEAEAKFKEVGEAYTILSDPMKRVRFDS---GQDL 442 (486)
T ss_pred hhhHHHHhhhhhhc--ccchhhhHHHHHHHHhCCCcCcch----hHHHHHHHHHHHHHHHHhcCHHHHhhccc---ccch
Confidence 57999999999966 778899999999999999999886 44567889999999999999999999975 4444
Q ss_pred C
Q 024044 192 N 192 (273)
Q Consensus 192 ~ 192 (273)
.
T Consensus 443 e 443 (486)
T KOG0550|consen 443 E 443 (486)
T ss_pred h
Confidence 4
No 66
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=3.6e-07 Score=81.58 Aligned_cols=64 Identities=23% Similarity=0.434 Sum_probs=55.4
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHH
Q 024044 112 SVDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAI 181 (273)
Q Consensus 112 ~~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~ 181 (273)
+.|+|++|.+.| .++.++|+++||+|...+|||++....+. |...|.-|.+||+.|-|+..|-.
T Consensus 52 nLNpfeVLqIdp--ev~~edikkryRklSilVHPDKN~Dd~~r----AqkAFdivkKA~k~l~n~~~rkr 115 (250)
T KOG1150|consen 52 NLNPFEVLQIDP--EVTDEDIKKRYRKLSILVHPDKNPDDAER----AQKAFDIVKKAYKLLENDKIRKR 115 (250)
T ss_pred ccChHHHHhcCC--CCCHHHHHHHHHhhheeecCCCCcccHHH----HHHHHHHHHHHHHHHhCHHHHHH
Confidence 689999999999 55999999999999999999999876433 56678999999999999995543
No 67
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=6.5e-06 Score=76.69 Aligned_cols=80 Identities=20% Similarity=0.167 Sum_probs=63.0
Q ss_pred CCCcccccCccc-CCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHhhCCc
Q 024044 112 SVDYFQIFGLGK-KYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYILRLEGVE 190 (273)
Q Consensus 112 ~~nyFellgl~~-~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL~L~G~~ 190 (273)
..|+|.+|||+. .+..++..|.++.++...+||||+.+..+..-. .+.|..|.+||+||+|+..|..|+-.-...+
T Consensus 42 ~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~---d~fFk~iqkA~evL~D~~~R~qyDS~df~ad 118 (379)
T COG5269 42 KVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGC---DEFFKLIQKAREVLGDRKLRLQYDSNDFDAD 118 (379)
T ss_pred hhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCc---HHHHHHHHHHHHHhccHHHHhhccccccccC
Confidence 468999999985 455578888889999999999999854443322 2468999999999999999999987655555
Q ss_pred CCCC
Q 024044 191 VNED 194 (273)
Q Consensus 191 ~~ee 194 (273)
+.+.
T Consensus 119 vppp 122 (379)
T COG5269 119 VPPP 122 (379)
T ss_pred CCCc
Confidence 5543
No 68
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.00049 Score=63.13 Aligned_cols=56 Identities=23% Similarity=0.459 Sum_probs=46.7
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HhcC
Q 024044 112 SVDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYR-TLTN 175 (273)
Q Consensus 112 ~~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~-tL~d 175 (273)
-+.||.+||+..+. |..+++.+|++|++.+|||.-.... ..+.+.+|.+||+ +|..
T Consensus 46 ~~e~fril~v~e~~--~adevr~af~~lakq~hpdsgs~~a------daa~f~qideafrkvlq~ 102 (342)
T KOG0568|consen 46 IMECFRILGVEEGA--DADEVREAFHDLAKQVHPDSGSEEA------DAARFIQIDEAFRKVLQE 102 (342)
T ss_pred HHHHHHHhcccccC--chhHHHHHHHHHHHHcCCCCCCccc------cHHHHHHHHHHHHHHHHH
Confidence 35799999999988 8999999999999999999865432 3456789999998 6654
No 69
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.0012 Score=71.15 Aligned_cols=53 Identities=23% Similarity=0.236 Sum_probs=41.1
Q ss_pred CcccccCcccCC--CCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhc
Q 024044 114 DYFQIFGLGKKY--EIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLT 174 (273)
Q Consensus 114 nyFellgl~~~f--~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~ 174 (273)
+-+++|.++-+- .=+..+|+++|++|+.+|||||++-. -+.|-.||+||+.|.
T Consensus 1282 ~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPEG--------RemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1282 LAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPEG--------REMFERVNKAYELLS 1336 (2235)
T ss_pred HHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCchH--------HHHHHHHHHHHHHHH
Confidence 567888876431 11458999999999999999998532 245788999999998
No 70
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.0022 Score=52.22 Aligned_cols=53 Identities=19% Similarity=0.186 Sum_probs=43.4
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcC
Q 024044 112 SVDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTN 175 (273)
Q Consensus 112 ~~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~d 175 (273)
...--.||||.++. |.+.|++++|++...-|||+-+++- ..+.||+|++.|..
T Consensus 55 r~EA~lIL~v~~s~--~k~KikeaHrriM~~NHPD~GGSPY---------lAsKINEAKdlLe~ 107 (112)
T KOG0723|consen 55 RREAALILGVTPSL--DKDKIKEAHRRIMLANHPDRGGSPY---------LASKINEAKDLLEG 107 (112)
T ss_pred hHHHHHHhCCCccc--cHHHHHHHHHHHHHcCCCcCCCCHH---------HHHHHHHHHHHHhc
Confidence 34455789999865 9999999999999999999976543 23789999999864
No 71
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=94.91 E-value=0.045 Score=54.66 Aligned_cols=49 Identities=16% Similarity=0.275 Sum_probs=40.3
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCCCCCC--HHHHHHHHHHHHHHHHHHHHhc
Q 024044 126 EIGNEKLEGKYKDWQKRIHPDLVHSKS--EKEREYAAEQSGRVIEAYRTLT 174 (273)
Q Consensus 126 ~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~--~~E~~~a~~~s~~IN~AY~tL~ 174 (273)
-|+...+|++||+-.+.+||||.++.+ ...|-|+++.|..+++|++.-.
T Consensus 399 LVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f~ 449 (453)
T KOG0431|consen 399 LVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKFN 449 (453)
T ss_pred ccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhhh
Confidence 478999999999999999999998774 4445677788888888887644
No 72
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.68 E-value=0.03 Score=48.69 Aligned_cols=59 Identities=22% Similarity=0.348 Sum_probs=51.0
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCC--HHHHHHHHHHHHHHHHHHHHh
Q 024044 113 VDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKS--EKEREYAAEQSGRVIEAYRTL 173 (273)
Q Consensus 113 ~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~--~~E~~~a~~~s~~IN~AY~tL 173 (273)
.+.+.+||++.+- +...++++|+++....|||+-.+.+ .+--+.+.+..+.||+||+.+
T Consensus 113 ~~~l~~l~~~~~~--~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKA--DQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhh--hHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 6789999999977 8999999999999999999987665 445567788999999999864
No 73
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=93.68 E-value=0.04 Score=33.60 Aligned_cols=22 Identities=27% Similarity=0.638 Sum_probs=17.9
Q ss_pred CCCCCCCCCCCCCCcccCCCCCC
Q 024044 83 ATCWNCNEAPKAAPFLFCESCRS 105 (273)
Q Consensus 83 ~~Cw~C~~~~~~~~~~fC~~C~~ 105 (273)
..|++|+... ....-||+.||+
T Consensus 3 ~~Cp~Cg~~~-~~~~~fC~~CG~ 24 (26)
T PF13248_consen 3 MFCPNCGAEI-DPDAKFCPNCGA 24 (26)
T ss_pred CCCcccCCcC-CcccccChhhCC
Confidence 5799999954 556789999996
No 74
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=93.15 E-value=0.23 Score=40.63 Aligned_cols=50 Identities=18% Similarity=0.285 Sum_probs=42.6
Q ss_pred CCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcc
Q 024044 127 IGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPL 177 (273)
Q Consensus 127 Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~ 177 (273)
+...+|+.+.|.+-+++|||.|+..++ |++.-++-.+.+|.-.+.|..+.
T Consensus 6 ~~~~~l~~aLr~Fy~~VHPDlF~~~P~-~k~~Ne~SLk~Ln~~Ld~l~~~~ 55 (112)
T PF14687_consen 6 LSSPDLRSALRPFYFAVHPDLFGQHPE-EKQVNEESLKLLNSYLDSLKKRK 55 (112)
T ss_pred hhhHHHHHHHHHHHHHhCCcccccChH-HHHhhHHHHHHHHHHHHHHhccC
Confidence 356789999999999999999998655 88888888888988888888765
No 75
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=91.02 E-value=0.13 Score=30.66 Aligned_cols=21 Identities=29% Similarity=0.705 Sum_probs=16.6
Q ss_pred CCCCCCCCCCCCCcccCCCCCC
Q 024044 84 TCWNCNEAPKAAPFLFCESCRS 105 (273)
Q Consensus 84 ~Cw~C~~~~~~~~~~fC~~C~~ 105 (273)
.|++||..+. ...-||+.||+
T Consensus 1 ~Cp~CG~~~~-~~~~fC~~CG~ 21 (23)
T PF13240_consen 1 YCPNCGAEIE-DDAKFCPNCGT 21 (23)
T ss_pred CCcccCCCCC-CcCcchhhhCC
Confidence 4899999764 45679999996
No 76
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=88.46 E-value=0.44 Score=38.85 Aligned_cols=30 Identities=20% Similarity=0.502 Sum_probs=22.7
Q ss_pred CCCCCCCCCCC--CCCCCcccCCCCCCCCCCC
Q 024044 81 SNATCWNCNEA--PKAAPFLFCESCRSVQPVD 110 (273)
Q Consensus 81 ~~~~Cw~C~~~--~~~~~~~fC~~C~~iqp~~ 110 (273)
..+.|++||.- -.......||.||+++|+.
T Consensus 8 tKR~Cp~CG~kFYDLnk~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 8 TKRTCPSCGAKFYDLNKDPIVCPKCGTEFPPE 39 (108)
T ss_pred CcccCCCCcchhccCCCCCccCCCCCCccCcc
Confidence 35899999983 1233456899999999986
No 77
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=84.91 E-value=0.86 Score=47.57 Aligned_cols=35 Identities=17% Similarity=0.523 Sum_probs=24.3
Q ss_pred cccccccccCCCCCCCCCCCCCCCCCcccCCCCCCC
Q 024044 71 SFCSESAEKASNATCWNCNEAPKAAPFLFCESCRSV 106 (273)
Q Consensus 71 ~~~~~~~~~~~~~~Cw~C~~~~~~~~~~fC~~C~~i 106 (273)
.||...........|.+||... ....-||+.||+-
T Consensus 16 kFC~~CG~~l~~~~Cp~CG~~~-~~~~~fC~~CG~~ 50 (645)
T PRK14559 16 RFCQKCGTSLTHKPCPQCGTEV-PVDEAHCPNCGAE 50 (645)
T ss_pred ccccccCCCCCCCcCCCCCCCC-CcccccccccCCc
Confidence 4565554443446899999964 4456799999984
No 78
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=83.28 E-value=0.93 Score=27.84 Aligned_cols=22 Identities=27% Similarity=0.603 Sum_probs=17.2
Q ss_pred CCCCCCCCCCCCCcccCCCCCCC
Q 024044 84 TCWNCNEAPKAAPFLFCESCRSV 106 (273)
Q Consensus 84 ~Cw~C~~~~~~~~~~fC~~C~~i 106 (273)
.|+.|+..+ ....-+|+.||..
T Consensus 2 ~CP~C~~~V-~~~~~~Cp~CG~~ 23 (26)
T PF10571_consen 2 TCPECGAEV-PESAKFCPHCGYD 23 (26)
T ss_pred cCCCCcCCc-hhhcCcCCCCCCC
Confidence 699999965 4556789999974
No 79
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=80.01 E-value=1.6 Score=36.78 Aligned_cols=30 Identities=10% Similarity=0.029 Sum_probs=22.6
Q ss_pred CCCCCCCCCCC--CCCCCcccCCCCCCCCCCC
Q 024044 81 SNATCWNCNEA--PKAAPFLFCESCRSVQPVD 110 (273)
Q Consensus 81 ~~~~Cw~C~~~--~~~~~~~fC~~C~~iqp~~ 110 (273)
..+.|++||.. -.......||.||..+|+.
T Consensus 8 tKr~Cp~cg~kFYDLnk~p~vcP~cg~~~~~~ 39 (129)
T TIGR02300 8 TKRICPNTGSKFYDLNRRPAVSPYTGEQFPPE 39 (129)
T ss_pred ccccCCCcCccccccCCCCccCCCcCCccCcc
Confidence 35899999983 1234567899999999875
No 80
>PRK04023 DNA polymerase II large subunit; Validated
Probab=76.46 E-value=4.5 Score=44.31 Aligned_cols=78 Identities=18% Similarity=0.229 Sum_probs=34.7
Q ss_pred cccccccccccCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCC-CcccccCcccCCCCCHH-HHHHHHHHHHHhhCCC
Q 024044 69 GRSFCSESAEKASNATCWNCNEAPKAAPFLFCESCRSVQPVDHSV-DYFQIFGLGKKYEIGNE-KLEGKYKDWQKRIHPD 146 (273)
Q Consensus 69 ~r~~~~~~~~~~~~~~Cw~C~~~~~~~~~~fC~~C~~iqp~~~~~-nyFellgl~~~f~Id~~-~Lk~~Yr~Lqk~~HPD 146 (273)
.+.||...........|++||.. .....||+.|+...-+.... -=+++-.-. ...||.. .+.++..++--.-.+|
T Consensus 625 g~RfCpsCG~~t~~frCP~CG~~--Te~i~fCP~CG~~~~~y~CPKCG~El~~~s-~~~i~l~~~~~~A~~~lg~~~~~~ 701 (1121)
T PRK04023 625 GRRKCPSCGKETFYRRCPFCGTH--TEPVYRCPRCGIEVEEDECEKCGREPTPYS-KRKIDLKELYDRALENLGERKNFD 701 (1121)
T ss_pred cCccCCCCCCcCCcccCCCCCCC--CCcceeCccccCcCCCCcCCCCCCCCCccc-eEEecHHHHHHHHHHHhCCcCCcc
Confidence 34455554444444667777664 22345666666533221110 011211111 1234543 4455565555544455
Q ss_pred CCC
Q 024044 147 LVH 149 (273)
Q Consensus 147 k~~ 149 (273)
...
T Consensus 702 ~~K 704 (1121)
T PRK04023 702 EVK 704 (1121)
T ss_pred ccc
Confidence 543
No 81
>PRK00420 hypothetical protein; Validated
Probab=73.96 E-value=2.3 Score=34.92 Aligned_cols=24 Identities=13% Similarity=0.166 Sum_probs=19.2
Q ss_pred CCCCCCCCCCCC--CCCcccCCCCCC
Q 024044 82 NATCWNCNEAPK--AAPFLFCESCRS 105 (273)
Q Consensus 82 ~~~Cw~C~~~~~--~~~~~fC~~C~~ 105 (273)
...|+.||.+.. .....+||.|+.
T Consensus 23 ~~~CP~Cg~pLf~lk~g~~~Cp~Cg~ 48 (112)
T PRK00420 23 SKHCPVCGLPLFELKDGEVVCPVHGK 48 (112)
T ss_pred cCCCCCCCCcceecCCCceECCCCCC
Confidence 478999999654 356689999997
No 82
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=72.20 E-value=35 Score=28.37 Aligned_cols=50 Identities=14% Similarity=0.254 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhHHHHHHHHH
Q 024044 221 TLKEIQSQMQEKLIHWGNSFADAYQNRNFDEARVCIRRMTYYHRVNEEIA 270 (273)
Q Consensus 221 ~L~~l~~~~~~~i~~~~~~l~~af~~~d~~~A~~~l~kLkYl~ki~~eI~ 270 (273)
.|++-...++.+++.+...+..+..+|+-+.|+.++.+++.+.+..+.+.
T Consensus 12 ~L~~~~~~le~~i~~~~~~~k~~~~~~~~~~A~~~lk~~k~~~k~~~~~~ 61 (171)
T PF03357_consen 12 RLEKQIKRLEKKIKKLEKKAKKAIKKGNKERAKIYLKRKKRLEKQLEKLL 61 (171)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHH
Confidence 46666778888899999999999999999999999999999988877664
No 83
>PF12773 DZR: Double zinc ribbon
Probab=69.55 E-value=4.5 Score=27.54 Aligned_cols=25 Identities=16% Similarity=0.429 Sum_probs=14.6
Q ss_pred CCCCCCCCCCC--CCCcccCCCCCCCC
Q 024044 83 ATCWNCNEAPK--AAPFLFCESCRSVQ 107 (273)
Q Consensus 83 ~~Cw~C~~~~~--~~~~~fC~~C~~iq 107 (273)
..|++||..+. .....+|+.|++.-
T Consensus 13 ~fC~~CG~~l~~~~~~~~~C~~Cg~~~ 39 (50)
T PF12773_consen 13 KFCPHCGTPLPPPDQSKKICPNCGAEN 39 (50)
T ss_pred cCChhhcCChhhccCCCCCCcCCcCCC
Confidence 56777776543 33345677777643
No 84
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=67.86 E-value=52 Score=29.46 Aligned_cols=64 Identities=20% Similarity=0.360 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhHHHHHHHHHh
Q 024044 202 LLMEIMEIREAVEDAADSQTLKEIQSQMQEKLIHWGNSFADAYQNRNFDEARVCIRRMTYYHRVNEEIAK 271 (273)
Q Consensus 202 fLmeiME~rE~leea~d~~~L~~l~~~~~~~i~~~~~~l~~af~~~d~~~A~~~l~kLkYl~ki~~eI~~ 271 (273)
--..|+.+++.++- |..-...++.+++.+..........++-..|..+|.|=|+|++..+.+..
T Consensus 25 ~~~AIl~Lk~~~~~------L~krq~~Le~kIe~e~~~Ak~~~~~~kk~~Al~~LkrKK~~E~ql~q~~~ 88 (191)
T PTZ00446 25 IYKAILKNREAIDA------LEKKQVQVEKKIKQLEIEAKQKVEQNQMSNAKILLKRKKLYEQEIENILN 88 (191)
T ss_pred HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44678888887774 55556677777777777767777788888999999999999999888753
No 85
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=67.57 E-value=3.1 Score=36.48 Aligned_cols=31 Identities=19% Similarity=0.416 Sum_probs=23.4
Q ss_pred CCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccccc
Q 024044 83 ATCWNCNEAPKAAPFLFCESCRSVQPVDHSVDYFQIF 119 (273)
Q Consensus 83 ~~Cw~C~~~~~~~~~~fC~~C~~iqp~~~~~nyFell 119 (273)
-.|.-||.+....+.-.||.|++ ...+|+.|
T Consensus 135 ~vC~vCGy~~~ge~P~~CPiCga------~k~~F~~f 165 (166)
T COG1592 135 WVCPVCGYTHEGEAPEVCPICGA------PKEKFEKF 165 (166)
T ss_pred EEcCCCCCcccCCCCCcCCCCCC------hHHHhhcc
Confidence 57999999765666779999997 34566655
No 86
>KOG2577 consensus Transcription factor E2F/dimerization partner (TDP) [Transcription]
Probab=66.63 E-value=42 Score=32.83 Aligned_cols=101 Identities=18% Similarity=0.247 Sum_probs=67.4
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHH--hhCCcCCCCC---CC-
Q 024044 124 KYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYILR--LEGVEVNEDE---TV- 197 (273)
Q Consensus 124 ~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL~--L~G~~~~ee~---~~- 197 (273)
.++-...-|.++|-.|.+. -||-.- -+|+|-++|.=- +|..|++. |.|+++-+.. .+
T Consensus 68 R~d~SLglLTkKFv~Llq~-s~dGvl---------------dLn~aA~~L~Vq-KRRIYDITNVLEGI~LIeKksKN~Iq 130 (354)
T KOG2577|consen 68 RSDTSLGLLTKKFVDLLQE-SPDGVL---------------DLNKAAEVLNVQ-KRRIYDITNVLEGIGLIEKKSKNNIQ 130 (354)
T ss_pred cchhhHHHHHHHHHHHHHh-CCCcee---------------eHHHHHHHhccc-cceeeehhhhhhcccceeecccccee
Confidence 4566788999999998654 565543 399999999866 99999986 7899875431 11
Q ss_pred ------CC-HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 024044 198 ------SE-PELLMEIMEIREAVEDAADSQTLKEIQSQMQEKLIHWGNSFADAYQNR 247 (273)
Q Consensus 198 ------~d-~efLmeiME~rE~leea~d~~~L~~l~~~~~~~i~~~~~~l~~af~~~ 247 (273)
.. .+...++-.++++++ .|...++++++.|..|...|....+..
T Consensus 131 W~G~~~~~~~~~~e~~~~l~~e~~------~L~~~E~~LD~~i~~~q~~L~~lted~ 181 (354)
T KOG2577|consen 131 WIGGDFNSTGGVPERLNGLEAEVE------DLSQEEDDLDQLIRDCQQNLRLLTEDV 181 (354)
T ss_pred eecCCCccccccHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 11 111111112444443 466677788888888888888877753
No 87
>PF13877 RPAP3_C: Potential Monad-binding region of RPAP3
Probab=65.29 E-value=18 Score=27.81 Aligned_cols=49 Identities=24% Similarity=0.327 Sum_probs=34.1
Q ss_pred HHHHHHHHHh-cCcchhHHHHHHhhCCcCCCC-CCCCCHHHHHHHHHHHHH
Q 024044 164 GRVIEAYRTL-TNPLARAIYILRLEGVEVNED-ETVSEPELLMEIMEIREA 212 (273)
Q Consensus 164 ~~IN~AY~tL-~dP~~Ra~YlL~L~G~~~~ee-~~~~d~efLmeiME~rE~ 212 (273)
.+.-.+|+.| ++|..|++|+..+....+..= +...++++|.++++.=..
T Consensus 8 ~eF~~~w~~~~~~~~~~~~yL~~i~p~~l~~if~~~l~~~~L~~il~~l~~ 58 (94)
T PF13877_consen 8 YEFERDWRRLKKDPEERYEYLKSIPPDSLPKIFKNSLEPEFLSEILEALNE 58 (94)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhCChHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 3456677777 889999999988754443210 235788999999887553
No 88
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=65.08 E-value=8.6 Score=32.23 Aligned_cols=53 Identities=25% Similarity=0.291 Sum_probs=35.8
Q ss_pred CcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcc
Q 024044 114 DYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPL 177 (273)
Q Consensus 114 nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~ 177 (273)
.-..||||++ .++.++|.++|..|-..-+|++-++ --- -+.|..|.+.|...+
T Consensus 59 EA~~ILnv~~--~~~~eeI~k~y~~Lf~~Nd~~kGGS--fYL-------QSKV~rAKErl~~El 111 (127)
T PF03656_consen 59 EARQILNVKE--ELSREEIQKRYKHLFKANDPSKGGS--FYL-------QSKVFRAKERLEQEL 111 (127)
T ss_dssp HHHHHHT--G----SHHHHHHHHHHHHHHT-CCCTS---HHH-------HHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCC--ccCHHHHHHHHHHHHhccCCCcCCC--HHH-------HHHHHHHHHHHHHHH
Confidence 4568999999 5599999999999999999997543 221 156888887776333
No 89
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=62.03 E-value=5.8 Score=24.03 Aligned_cols=21 Identities=24% Similarity=0.523 Sum_probs=13.3
Q ss_pred CCCCCCCCC---CCCcccCCCCCC
Q 024044 85 CWNCNEAPK---AAPFLFCESCRS 105 (273)
Q Consensus 85 Cw~C~~~~~---~~~~~fC~~C~~ 105 (273)
|-+|+..+. ....|.||+||.
T Consensus 1 C~sC~~~i~~r~~~v~f~CPnCG~ 24 (24)
T PF07754_consen 1 CTSCGRPIAPREQAVPFPCPNCGF 24 (24)
T ss_pred CccCCCcccCcccCceEeCCCCCC
Confidence 667866432 244678999973
No 90
>smart00661 RPOL9 RNA polymerase subunit 9.
Probab=61.48 E-value=5.5 Score=27.16 Aligned_cols=29 Identities=17% Similarity=0.527 Sum_probs=20.1
Q ss_pred CCCCCCCCCCCC-----CcccCCCCCCCCCCCCC
Q 024044 84 TCWNCNEAPKAA-----PFLFCESCRSVQPVDHS 112 (273)
Q Consensus 84 ~Cw~C~~~~~~~-----~~~fC~~C~~iqp~~~~ 112 (273)
.|+.||...... ..+.|+.|+.+.+.++.
T Consensus 2 FCp~Cg~~l~~~~~~~~~~~vC~~Cg~~~~~~~~ 35 (52)
T smart00661 2 FCPKCGNMLIPKEGKEKRRFVCRKCGYEEPIEQK 35 (52)
T ss_pred CCCCCCCccccccCCCCCEEECCcCCCeEECCCc
Confidence 588898843221 25789999998877543
No 91
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=60.18 E-value=2.6 Score=27.52 Aligned_cols=23 Identities=22% Similarity=0.547 Sum_probs=12.6
Q ss_pred CCCCCCCCCC-------CCCcccCCCCCCC
Q 024044 84 TCWNCNEAPK-------AAPFLFCESCRSV 106 (273)
Q Consensus 84 ~Cw~C~~~~~-------~~~~~fC~~C~~i 106 (273)
.|..||.... .....+|++|+.|
T Consensus 2 fC~~CG~~l~~~ip~gd~r~R~vC~~Cg~I 31 (34)
T PF14803_consen 2 FCPQCGGPLERRIPEGDDRERLVCPACGFI 31 (34)
T ss_dssp B-TTT--B-EEE--TT-SS-EEEETTTTEE
T ss_pred ccccccChhhhhcCCCCCccceECCCCCCE
Confidence 4788888431 2345789999976
No 92
>COG1439 Predicted nucleic acid-binding protein, consists of a PIN domain and a Zn-ribbon module [General function prediction only]
Probab=55.79 E-value=5.4 Score=35.33 Aligned_cols=23 Identities=30% Similarity=0.690 Sum_probs=18.3
Q ss_pred CCCCCCCCCCCCCCCcccCCCCCC
Q 024044 82 NATCWNCNEAPKAAPFLFCESCRS 105 (273)
Q Consensus 82 ~~~Cw~C~~~~~~~~~~fC~~C~~ 105 (273)
...||.|+..- +.+.-|||.||.
T Consensus 139 ~~rC~GC~~~f-~~~~~~Cp~CG~ 161 (177)
T COG1439 139 RLRCHGCKRIF-PEPKDFCPICGS 161 (177)
T ss_pred eEEEecCceec-CCCCCcCCCCCC
Confidence 36899999953 256789999997
No 93
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=55.22 E-value=6.3 Score=33.33 Aligned_cols=24 Identities=21% Similarity=0.473 Sum_probs=18.8
Q ss_pred CCCCCCCCCCCC-CCCcccCCCCCC
Q 024044 82 NATCWNCNEAPK-AAPFLFCESCRS 105 (273)
Q Consensus 82 ~~~Cw~C~~~~~-~~~~~fC~~C~~ 105 (273)
..+|+.||.+.. .....|||.|+.
T Consensus 28 ~~hCp~Cg~PLF~KdG~v~CPvC~~ 52 (131)
T COG1645 28 AKHCPKCGTPLFRKDGEVFCPVCGY 52 (131)
T ss_pred HhhCcccCCcceeeCCeEECCCCCc
Confidence 478999999653 345689999995
No 94
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=55.03 E-value=4 Score=29.87 Aligned_cols=22 Identities=27% Similarity=0.674 Sum_probs=15.0
Q ss_pred CCCCCCCCCCCCCCCcccCC-CCC
Q 024044 82 NATCWNCNEAPKAAPFLFCE-SCR 104 (273)
Q Consensus 82 ~~~Cw~C~~~~~~~~~~fC~-~C~ 104 (273)
.+.|.+||.+. +.+..||. .|+
T Consensus 3 HkHC~~CG~~I-p~~~~fCS~~C~ 25 (59)
T PF09889_consen 3 HKHCPVCGKPI-PPDESFCSPKCR 25 (59)
T ss_pred CCcCCcCCCcC-CcchhhhCHHHH
Confidence 47899998854 34567884 555
No 95
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=54.81 E-value=5.3 Score=26.74 Aligned_cols=25 Identities=28% Similarity=0.542 Sum_probs=16.6
Q ss_pred CCCCCCCCC----CCCCcccCCCCCCCCC
Q 024044 84 TCWNCNEAP----KAAPFLFCESCRSVQP 108 (273)
Q Consensus 84 ~Cw~C~~~~----~~~~~~fC~~C~~iqp 108 (273)
.|++|+... .....++|+.||.|..
T Consensus 2 ~Cp~Cg~~~~~~D~~~g~~vC~~CG~Vl~ 30 (43)
T PF08271_consen 2 KCPNCGSKEIVFDPERGELVCPNCGLVLE 30 (43)
T ss_dssp SBTTTSSSEEEEETTTTEEEETTT-BBEE
T ss_pred CCcCCcCCceEEcCCCCeEECCCCCCEee
Confidence 588898842 1245679999998654
No 96
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=54.23 E-value=9.7 Score=42.75 Aligned_cols=23 Identities=26% Similarity=0.793 Sum_probs=9.7
Q ss_pred CCCCCCCCCCCCCcccCCCCCCCCC
Q 024044 84 TCWNCNEAPKAAPFLFCESCRSVQP 108 (273)
Q Consensus 84 ~Cw~C~~~~~~~~~~fC~~C~~iqp 108 (273)
.|++||... .+..+|++|++-.|
T Consensus 681 fCP~CGs~t--e~vy~CPsCGaev~ 703 (1337)
T PRK14714 681 RCPDCGTHT--EPVYVCPDCGAEVP 703 (1337)
T ss_pred cCcccCCcC--CCceeCccCCCccC
Confidence 444454421 12234555555333
No 97
>PF08772 NOB1_Zn_bind: Nin one binding (NOB1) Zn-ribbon like; InterPro: IPR014881 This entry corresponds to a zinc ribbon and is found on the RNA binding protein NOB1. ; PDB: 2CON_A.
Probab=53.75 E-value=5.6 Score=30.30 Aligned_cols=23 Identities=26% Similarity=0.650 Sum_probs=9.9
Q ss_pred CCCCCCCCCCCCCCcccCCCCCC
Q 024044 83 ATCWNCNEAPKAAPFLFCESCRS 105 (273)
Q Consensus 83 ~~Cw~C~~~~~~~~~~fC~~C~~ 105 (273)
..|..|-.........|||+||.
T Consensus 10 lrC~aCf~~t~~~~k~FCp~CGn 32 (73)
T PF08772_consen 10 LRCHACFKITKDMTKQFCPKCGN 32 (73)
T ss_dssp EE-SSS--EES-SS--S-SSS--
T ss_pred EEccccccCcCCCCceeCcccCC
Confidence 46888887544456789999986
No 98
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=53.36 E-value=9.4 Score=28.03 Aligned_cols=8 Identities=25% Similarity=1.107 Sum_probs=3.7
Q ss_pred ccCCCCCC
Q 024044 98 LFCESCRS 105 (273)
Q Consensus 98 ~fC~~C~~ 105 (273)
|.||+||.
T Consensus 26 F~CPnCG~ 33 (59)
T PRK14890 26 FLCPNCGE 33 (59)
T ss_pred eeCCCCCC
Confidence 44444443
No 99
>TIGR03338 phnR_burk phosphonate utilization associated transcriptional regulator. This family of proteins are members of the GntR family (pfam00392) containing an N-terminal helix-turn-helix (HTH) motif. This clade is found adjacent to or inside of operons for the degradation of 2-aminoethylphosphonate (AEP) in Polaromonas, Burkholderia, Ralstonia and Verminephrobacter.
Probab=52.69 E-value=90 Score=26.93 Aligned_cols=52 Identities=15% Similarity=0.208 Sum_probs=37.7
Q ss_pred HHHHHHHHhcCcchhHHHHHHhhCC-cCCCC-C---CCCCHHHHHHHHHHHHHHHhc
Q 024044 165 RVIEAYRTLTNPLARAIYILRLEGV-EVNED-E---TVSEPELLMEIMEIREAVEDA 216 (273)
Q Consensus 165 ~IN~AY~tL~dP~~Ra~YlL~L~G~-~~~ee-~---~~~d~efLmeiME~rE~leea 216 (273)
.+-+-|.+=..|++.|.-.|.-.|+ +.... + ...+.+.+.+++++|..||..
T Consensus 39 ~La~~lgVSRtpVReAL~~L~~eGlv~~~~~~G~~V~~~~~~~~~ei~~~R~~lE~~ 95 (212)
T TIGR03338 39 DIAARLGVSRGPVREAFRALEEAGLVRNEKNRGVFVREISLAEADEIYELRAVLDEI 95 (212)
T ss_pred HHHHHhCCChHHHHHHHHHHHHCCCEEEecCCCeEEecCCHHHHHHHHHHHHHHHHH
Confidence 4677777777888888888887774 22222 2 235678899999999999964
No 100
>smart00685 DM14 Repeats in fly CG4713, worm Y37H9A.3 and human FLJ20241.
Probab=51.53 E-value=93 Score=22.75 Aligned_cols=42 Identities=12% Similarity=0.166 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhHHHHHHHHH
Q 024044 229 MQEKLIHWGNSFADAYQNRNFDEARVCIRRMTYYHRVNEEIA 270 (273)
Q Consensus 229 ~~~~i~~~~~~l~~af~~~d~~~A~~~l~kLkYl~ki~~eI~ 270 (273)
++++.++....-.++=..||.+.|+..++-.|-|+...+..+
T Consensus 4 L~~R~~~yk~Aa~~AK~~gd~~kAr~~~R~~K~~~~~I~~~~ 45 (59)
T smart00685 4 LQQRQEQYKQAALQAKRAGDEEKARRHLRIAKQFDDAIKAAR 45 (59)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhHHHHHHHHH
Confidence 455666666666677788999999999999999988777654
No 101
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=50.30 E-value=9 Score=24.70 Aligned_cols=22 Identities=18% Similarity=0.365 Sum_probs=15.3
Q ss_pred CCCCCCCCCC-CCCcccCCCCCC
Q 024044 84 TCWNCNEAPK-AAPFLFCESCRS 105 (273)
Q Consensus 84 ~Cw~C~~~~~-~~~~~fC~~C~~ 105 (273)
.|..||.... ..+.-.||.|++
T Consensus 4 ~C~~CG~i~~g~~~p~~CP~Cg~ 26 (34)
T cd00729 4 VCPVCGYIHEGEEAPEKCPICGA 26 (34)
T ss_pred ECCCCCCEeECCcCCCcCcCCCC
Confidence 5888998532 224458999997
No 102
>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.
Probab=49.30 E-value=52 Score=21.21 Aligned_cols=32 Identities=13% Similarity=0.229 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhH
Q 024044 231 EKLIHWGNSFADAYQNRNFDEARVCIRRMTYY 262 (273)
Q Consensus 231 ~~i~~~~~~l~~af~~~d~~~A~~~l~kLkYl 262 (273)
+.+.++...+..+.+..||+.|..+=.++.-+
T Consensus 2 ~~i~~l~~~m~~a~~~~dfE~Aa~~Rd~i~~l 33 (36)
T PF02151_consen 2 KLIKELEEKMEEAVENEDFEKAARLRDQIKAL 33 (36)
T ss_dssp HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 46778888899999999999997755554433
No 103
>KOG2910 consensus Uncharacterized conserved protein predicted to be involved in protein sorting [General function prediction only]
Probab=48.09 E-value=99 Score=28.00 Aligned_cols=61 Identities=15% Similarity=0.241 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhHHHHHHHHHh
Q 024044 205 EIMEIREAVEDAADSQTLKEIQSQMQEKLIHWGNSFADAYQNRNFDEARVCIRRMTYYHRVNEEIAK 271 (273)
Q Consensus 205 eiME~rE~leea~d~~~L~~l~~~~~~~i~~~~~~l~~af~~~d~~~A~~~l~kLkYl~ki~~eI~~ 271 (273)
.|+++.++- +.|.+..+.++..++.-......++..|+-+.|.-+|.+-||...|.....+
T Consensus 17 AIL~lK~QR------dkl~qyqkR~e~~le~Er~~Ar~lird~rKdrAlllLKkKryQE~Ll~qt~~ 77 (209)
T KOG2910|consen 17 AILSLKTQR------DKLKQYQKRLEKQLEAERQLARDLIRDGRKDRALLLLKKKRYQEELLTQTDN 77 (209)
T ss_pred HHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555433 3566777777777777777778889999999999999999999999887654
No 104
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=47.64 E-value=2.1e+02 Score=25.64 Aligned_cols=101 Identities=17% Similarity=0.180 Sum_probs=53.5
Q ss_pred ccCCCCCCCCCCCCCCCcccccCcccCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcc
Q 024044 98 LFCESCRSVQPVDHSVDYFQIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPL 177 (273)
Q Consensus 98 ~fC~~C~~iqp~~~~~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~ 177 (273)
..||.||...- .+.|. .|+....+.-...+..+++|.-+.+...-+. |.+...+.-.-|++...+.
T Consensus 49 ~vCP~CgyA~~----~~~F~--------~l~~~~~~~i~~~i~~~~~~~~~~~~Rt~~~--ai~~YkLAll~~~~~~~~~ 114 (214)
T PF09986_consen 49 WVCPHCGYAAF----EEDFE--------KLSPEQKEKIKENISSRWKPRDFSGERTLEE--AIESYKLALLCAQIKKEKP 114 (214)
T ss_pred EECCCCCCccc----ccccc--------cCCHHHHHHHHHHHHhhcccCCCCCCCCHHH--HHHHHHHHHHHHHHhCCCH
Confidence 45888886332 22344 2356666777777888899998877544443 4445555555577777555
Q ss_pred hhHHH-HHHhhCCcCC-CCCCCCCHHHHHHHHHHHHHH
Q 024044 178 ARAIY-ILRLEGVEVN-EDETVSEPELLMEIMEIREAV 213 (273)
Q Consensus 178 ~Ra~Y-lL~L~G~~~~-ee~~~~d~efLmeiME~rE~l 213 (273)
....+ .|.+. .-.. .++......||..-++.-++-
T Consensus 115 s~~A~l~LrlA-WlyR~~~~~~~E~~fl~~Al~~y~~a 151 (214)
T PF09986_consen 115 SKKAGLCLRLA-WLYRDLGDEENEKRFLRKALEFYEEA 151 (214)
T ss_pred HHHHHHHHHHH-HHhhccCCHHHHHHHHHHHHHHHHHH
Confidence 43333 33331 0000 011122345777666664443
No 105
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=47.60 E-value=65 Score=31.64 Aligned_cols=46 Identities=20% Similarity=0.406 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHhHHHHHH
Q 024044 222 LKEIQSQMQEKLIHWGNSFADAYQN-RNFDEARVCIRRMTYYHRVNE 267 (273)
Q Consensus 222 L~~l~~~~~~~i~~~~~~l~~af~~-~d~~~A~~~l~kLkYl~ki~~ 267 (273)
++.+.+.++++++++.+.++.+-++ |+.+..-..+++--||-+|-|
T Consensus 73 l~~m~~~neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigD 119 (393)
T KOG0687|consen 73 LNSMKKANEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGD 119 (393)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcc
Confidence 3444444444444444444444332 344444444555555555443
No 106
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=47.44 E-value=11 Score=30.66 Aligned_cols=25 Identities=24% Similarity=0.695 Sum_probs=17.2
Q ss_pred CCCCCCCCCCCCC-CCcccCCCCCCC
Q 024044 82 NATCWNCNEAPKA-APFLFCESCRSV 106 (273)
Q Consensus 82 ~~~Cw~C~~~~~~-~~~~fC~~C~~i 106 (273)
...|.+|+..... ...+.||.|+..
T Consensus 70 ~~~C~~Cg~~~~~~~~~~~CP~Cgs~ 95 (113)
T PRK12380 70 QAWCWDCSQVVEIHQHDAQCPHCHGE 95 (113)
T ss_pred EEEcccCCCEEecCCcCccCcCCCCC
Confidence 3689999984322 244569999974
No 107
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=47.32 E-value=11 Score=31.04 Aligned_cols=35 Identities=20% Similarity=0.413 Sum_probs=21.5
Q ss_pred CCCCCCCCCCCCcccCCCCCCCCCCCCCCCcccccC
Q 024044 85 CWNCNEAPKAAPFLFCESCRSVQPVDHSVDYFQIFG 120 (273)
Q Consensus 85 Cw~C~~~~~~~~~~fC~~C~~iqp~~~~~nyFellg 120 (273)
|+.|++.. ..-.+.|++|++.---.=..+.|..|.
T Consensus 1 CPvCg~~l-~vt~l~C~~C~t~i~G~F~l~~~~~L~ 35 (113)
T PF09862_consen 1 CPVCGGEL-VVTRLKCPSCGTEIEGEFELPWFARLS 35 (113)
T ss_pred CCCCCCce-EEEEEEcCCCCCEEEeeeccchhhcCC
Confidence 89999854 234578999998443222345555553
No 108
>PF14353 CpXC: CpXC protein
Probab=46.86 E-value=12 Score=30.56 Aligned_cols=16 Identities=19% Similarity=0.376 Sum_probs=11.1
Q ss_pred cccCCCCCCCCCCCCC
Q 024044 97 FLFCESCRSVQPVDHS 112 (273)
Q Consensus 97 ~~fC~~C~~iqp~~~~ 112 (273)
.+.||+||....++..
T Consensus 38 ~~~CP~Cg~~~~~~~p 53 (128)
T PF14353_consen 38 SFTCPSCGHKFRLEYP 53 (128)
T ss_pred EEECCCCCCceecCCC
Confidence 3469999987766543
No 109
>PF07729 FCD: FCD domain; InterPro: IPR011711 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector binding or oligomerisation domain at the C terminus. The winged-helix DNA-binding domain is well conserved in structure for the whole of the GntR family (IPR000524 from INTERPRO), and is similar in structure to other transcriptional regulator families. The C-terminal effector-binding and oligomerisation domains are more variable and are consequently used to define the subfamilies. Based on the sequence and structure of the C-terminal domains, the GtnR family can be divided into four major groups, as represented by FadR (IPR008920 from INTERPRO), HutC, MocR and YtrA, as well as some minor groups such as those represented by AraR and PlmA []. This entry represents the C-terminal ligand binding domain of many members of the GntR family. This domain probably binds to a range of effector molecules that regulate the transcription of genes through the action of the N-terminal DNA-binding domain. This domain is found in P45427 from SWISSPROT and P31460 from SWISSPROT that are regulators of sugar biosynthesis operons.; PDB: 3SXK_A 3SXY_A 3SXM_B 3SXZ_A 3FMS_A 2DI3_B 2HS5_A 3IHU_B 3C7J_A.
Probab=46.85 E-value=23 Score=26.62 Aligned_cols=10 Identities=50% Similarity=0.743 Sum_probs=4.8
Q ss_pred HHHHHHHHHh
Q 024044 206 IMEIREAVED 215 (273)
Q Consensus 206 iME~rE~lee 215 (273)
++++|+.||.
T Consensus 2 i~~~R~~Le~ 11 (125)
T PF07729_consen 2 IYEVRELLEP 11 (125)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4445555544
No 110
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=46.49 E-value=8.5 Score=24.84 Aligned_cols=26 Identities=27% Similarity=0.580 Sum_probs=19.0
Q ss_pred CCCCCCCCCC---CCCCcccCCCCCCCCC
Q 024044 83 ATCWNCNEAP---KAAPFLFCESCRSVQP 108 (273)
Q Consensus 83 ~~Cw~C~~~~---~~~~~~fC~~C~~iqp 108 (273)
..|..|++.. ....-.||..|+.++|
T Consensus 4 ~~C~~C~~~~i~~~~~~~~~C~~Cg~~~~ 32 (33)
T PF08792_consen 4 KKCSKCGGNGIVNKEDDYEVCIFCGSSFP 32 (33)
T ss_pred eEcCCCCCCeEEEecCCeEEcccCCcEee
Confidence 5688898842 2344579999999876
No 111
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=45.96 E-value=13 Score=39.06 Aligned_cols=26 Identities=31% Similarity=0.652 Sum_probs=19.7
Q ss_pred CCCCCCCCCCCCCCCcccCCCCCCCCCCC
Q 024044 82 NATCWNCNEAPKAAPFLFCESCRSVQPVD 110 (273)
Q Consensus 82 ~~~Cw~C~~~~~~~~~~fC~~C~~iqp~~ 110 (273)
...|.+||.... .-+|+.||+.-|++
T Consensus 15 akFC~~CG~~l~---~~~Cp~CG~~~~~~ 40 (645)
T PRK14559 15 NRFCQKCGTSLT---HKPCPQCGTEVPVD 40 (645)
T ss_pred CccccccCCCCC---CCcCCCCCCCCCcc
Confidence 478999998532 24799999987775
No 112
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=45.88 E-value=31 Score=34.05 Aligned_cols=54 Identities=22% Similarity=0.282 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhcCcchhHHHHHHhhCCcCCCCCCCCCHHHHHHHHHHHHHHHhcCCHHHH
Q 024044 163 SGRVIEAYRTLTNPLARAIYILRLEGVEVNEDETVSEPELLMEIMEIREAVEDAADSQTL 222 (273)
Q Consensus 163 s~~IN~AY~tL~dP~~Ra~YlL~L~G~~~~ee~~~~d~efLmeiME~rE~leea~d~~~L 222 (273)
+..+.++|.-+..|.. |.-. --.|++.- ..|-..|-+|--+.|++++.++..++
T Consensus 259 fllLskvY~ridQP~~-AL~~-~~~gld~f----P~~VT~l~g~ARi~eam~~~~~a~~l 312 (478)
T KOG1129|consen 259 FLLLSKVYQRIDQPER-ALLV-IGEGLDSF----PFDVTYLLGQARIHEAMEQQEDALQL 312 (478)
T ss_pred HHHHHHHHHHhccHHH-HHHH-HhhhhhcC----CchhhhhhhhHHHHHHHHhHHHHHHH
Confidence 4789999999998864 3221 12344432 33456888999999999987665443
No 113
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=44.76 E-value=16 Score=24.69 Aligned_cols=23 Identities=17% Similarity=0.397 Sum_probs=15.4
Q ss_pred CCCCCCCCCCC---CCCcccCCCCCC
Q 024044 83 ATCWNCNEAPK---AAPFLFCESCRS 105 (273)
Q Consensus 83 ~~Cw~C~~~~~---~~~~~fC~~C~~ 105 (273)
-.|.+||.... ....+.||.||.
T Consensus 4 y~C~~CG~~~~~~~~~~~~~Cp~CG~ 29 (46)
T PRK00398 4 YKCARCGREVELDEYGTGVRCPYCGY 29 (46)
T ss_pred EECCCCCCEEEECCCCCceECCCCCC
Confidence 46889988421 222578999986
No 114
>KOG3795 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.91 E-value=11 Score=33.63 Aligned_cols=39 Identities=26% Similarity=0.531 Sum_probs=26.3
Q ss_pred CCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCcccccCcccCC
Q 024044 81 SNATCWNCNEAPKAAPFLFCESCRSVQPVDHSVDYFQIFGLGKKY 125 (273)
Q Consensus 81 ~~~~Cw~C~~~~~~~~~~fC~~C~~iqp~~~~~nyFellgl~~~f 125 (273)
+.+.|..|++ +..|||=+|.. |+.....+--++.||-..
T Consensus 14 GRs~C~~C~~----SRkFfCY~C~V--PV~vp~E~~P~vkLPL~v 52 (230)
T KOG3795|consen 14 GRSTCPGCKS----SRKFFCYDCRV--PVPVPGEFTPTVKLPLAV 52 (230)
T ss_pred ccccCCCCCC----cceEEEEeecc--ccCcchhcccccccceee
Confidence 3589999998 46799999998 554334444455555433
No 115
>PRK14811 formamidopyrimidine-DNA glycosylase; Provisional
Probab=42.87 E-value=17 Score=33.78 Aligned_cols=28 Identities=21% Similarity=0.670 Sum_probs=21.5
Q ss_pred CCCCCCCCCCCC-----CCCcccCCCCCCCCCC
Q 024044 82 NATCWNCNEAPK-----AAPFLFCESCRSVQPV 109 (273)
Q Consensus 82 ~~~Cw~C~~~~~-----~~~~~fC~~C~~iqp~ 109 (273)
...|..|+..+. ....+|||.|...-|.
T Consensus 235 g~pC~~Cg~~I~~~~~~gR~ty~Cp~CQ~~~~~ 267 (269)
T PRK14811 235 GQPCPRCGTPIEKIVVGGRGTHFCPQCQPLRPL 267 (269)
T ss_pred cCCCCcCCCeeEEEEECCCCcEECCCCcCCCCC
Confidence 468999998642 3567899999987665
No 116
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=42.41 E-value=1.9e+02 Score=32.07 Aligned_cols=29 Identities=24% Similarity=0.658 Sum_probs=18.6
Q ss_pred CCCCCCCCCCCCCCCc--ccCCCCCC-CCCCC
Q 024044 82 NATCWNCNEAPKAAPF--LFCESCRS-VQPVD 110 (273)
Q Consensus 82 ~~~Cw~C~~~~~~~~~--~fC~~C~~-iqp~~ 110 (273)
.-+|--|+.......+ --||.|+. +|+++
T Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 852 (1006)
T PRK12775 821 QWRCDDCGKVSEGFAFPYGMCPACGGKLQALD 852 (1006)
T ss_pred eeehhhhccccccccCCcCcCcccccchhhhh
Confidence 3577788885443322 35999987 66664
No 117
>PF03993 DUF349: Domain of Unknown Function (DUF349); InterPro: IPR007139 This motif is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.
Probab=42.36 E-value=1e+02 Score=22.22 Aligned_cols=41 Identities=12% Similarity=0.069 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 024044 220 QTLKEIQSQMQEKLIHWGNSFADAYQNRNFDEARVCIRRMT 260 (273)
Q Consensus 220 ~~L~~l~~~~~~~i~~~~~~l~~af~~~d~~~A~~~l~kLk 260 (273)
++++....++-++..+++.++.......||..+...+..|+
T Consensus 23 ~~~~~~~~~n~~~K~~Li~~~~~l~~~~d~~~~~~~~k~l~ 63 (77)
T PF03993_consen 23 EEQDAEREENLEKKEALIEEAEALAESEDWKEAAEEIKELQ 63 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 34566667777788888888888888888888877766654
No 118
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=42.22 E-value=13 Score=31.09 Aligned_cols=9 Identities=44% Similarity=0.833 Sum_probs=6.8
Q ss_pred ccCCCCCCC
Q 024044 98 LFCESCRSV 106 (273)
Q Consensus 98 ~fC~~C~~i 106 (273)
+.||.||+.
T Consensus 108 ~~CP~Cgs~ 116 (135)
T PRK03824 108 LKCPKCGSR 116 (135)
T ss_pred cCCcCCCCC
Confidence 459999973
No 119
>PF07361 Cytochrom_B562: Cytochrome b562; InterPro: IPR009155 Cytochrome b562 is a haem-containing protein that is expressed in the periplasm of Escherichia coli. In b-type cytochromes, the haem atom is not covalently attached to the polypeptide. Cytochrome b562 has a four-helical bundle structure that is structurally similar to that found in members of the cytochrome c family (IPR002321 from INTERPRO). Cytochrome b562 has a reduction potential of 167 mV, which sets the energy yield possible in metabolism and is also a key determinant of the rate at which redox reactions proceed [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0042597 periplasmic space; PDB: 4ER9_A 3IQ6_G 2QLA_B 3FOO_A 3M79_C 256B_A 3NMI_F 3HNK_A 3NMK_D 2BC5_A ....
Probab=42.04 E-value=1e+02 Score=24.57 Aligned_cols=60 Identities=25% Similarity=0.369 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHhcCC---------HHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 024044 201 ELLMEIMEIREAVEDAAD---------SQTLKEIQSQMQEKLIHWGNSFADAYQNRNFDEARVCIRRMTY 261 (273)
Q Consensus 201 efLmeiME~rE~leea~d---------~~~L~~l~~~~~~~i~~~~~~l~~af~~~d~~~A~~~l~kLkY 261 (273)
+|.-.+.++++.++++.. .+++.....-++ ++...+..+..+.+.|++++|+..+.+|.=
T Consensus 25 e~~~~l~~m~~~a~~ak~~~P~~~~~d~~~~~~Y~~Gl~-~li~~id~a~~~~~~G~l~~AK~~l~~l~~ 93 (103)
T PF07361_consen 25 EMKTALDKMRAAAEDAKQGKPPKLEGDSAEVKDYQEGLD-KLIDQIDKAEALAEAGKLDEAKAALKKLDD 93 (103)
T ss_dssp HHHHHHHHHHHHHHHHTTTS-GGGTTTSHHHHHHHHHHH-HHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcCCccccccchHHHHHHHHHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 455556666666666532 122222222222 223334445667789999999999988753
No 120
>PRK01343 zinc-binding protein; Provisional
Probab=41.99 E-value=22 Score=25.92 Aligned_cols=27 Identities=22% Similarity=0.783 Sum_probs=17.5
Q ss_pred CCCCCCCCCCCCCCCCcccCC-CCCCCC
Q 024044 81 SNATCWNCNEAPKAAPFLFCE-SCRSVQ 107 (273)
Q Consensus 81 ~~~~Cw~C~~~~~~~~~~fC~-~C~~iq 107 (273)
+...|+.|++........||. .|..|.
T Consensus 8 p~~~CP~C~k~~~~~~rPFCS~RC~~iD 35 (57)
T PRK01343 8 PTRPCPECGKPSTREAYPFCSERCRDID 35 (57)
T ss_pred CCCcCCCCCCcCcCCCCcccCHHHhhhh
Confidence 357899999865444457776 565543
No 121
>PRK11414 colanic acid/biofilm transcriptional regulator; Provisional
Probab=41.96 E-value=2.1e+02 Score=24.87 Aligned_cols=52 Identities=21% Similarity=0.149 Sum_probs=36.9
Q ss_pred HHHHHHHHhcCcchhHHHHHHhhCC-cCCCC-C---CCCCHHHHHHHHHHHHHHHhc
Q 024044 165 RVIEAYRTLTNPLARAIYILRLEGV-EVNED-E---TVSEPELLMEIMEIREAVEDA 216 (273)
Q Consensus 165 ~IN~AY~tL~dP~~Ra~YlL~L~G~-~~~ee-~---~~~d~efLmeiME~rE~leea 216 (273)
.|-+-|.+=+.|++-|.-.|.-.|+ ++... + ...+.+-+.+++++|..||..
T Consensus 39 ~La~~lgVSRtpVREAL~~L~~eGLV~~~~~~g~~v~~~~~~~~~ei~~~R~~lE~~ 95 (221)
T PRK11414 39 NLAEQLGMSITPVREALLRLVSVNALSVAPAQAFTVPEVSKRQLDEINRIRYELELM 95 (221)
T ss_pred HHHHHHCCCchhHHHHHHHHHHCCCEEecCCCceeecCCCHHHHHHHHHHHHHHHHH
Confidence 3677777778888888888877774 22221 1 235677789999999999874
No 122
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=40.81 E-value=15 Score=29.85 Aligned_cols=25 Identities=20% Similarity=0.632 Sum_probs=16.8
Q ss_pred CCCCCCCCCCCC-CCcccCCCCCCCC
Q 024044 83 ATCWNCNEAPKA-APFLFCESCRSVQ 107 (273)
Q Consensus 83 ~~Cw~C~~~~~~-~~~~fC~~C~~iq 107 (273)
..|.+|+..... ...+.||.|+...
T Consensus 71 ~~C~~Cg~~~~~~~~~~~CP~Cgs~~ 96 (115)
T TIGR00100 71 CECEDCSEEVSPEIDLYRCPKCHGIM 96 (115)
T ss_pred EEcccCCCEEecCCcCccCcCCcCCC
Confidence 678899884322 2345699999743
No 123
>COG0375 HybF Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) [General function prediction only]
Probab=39.91 E-value=14 Score=30.54 Aligned_cols=25 Identities=20% Similarity=0.542 Sum_probs=17.2
Q ss_pred CCCCCCCCCCC-CCCcccCCCCCCCC
Q 024044 83 ATCWNCNEAPK-AAPFLFCESCRSVQ 107 (273)
Q Consensus 83 ~~Cw~C~~~~~-~~~~~fC~~C~~iq 107 (273)
..||.|+.... ....+.||.||+.-
T Consensus 71 ~~C~~C~~~~~~e~~~~~CP~C~s~~ 96 (115)
T COG0375 71 CWCLDCGQEVELEELDYRCPKCGSIN 96 (115)
T ss_pred EEeccCCCeecchhheeECCCCCCCc
Confidence 67999988432 23345699999744
No 124
>TIGR01384 TFS_arch transcription factor S, archaeal. There has been an apparent duplication event in the Halobacteriaceae lineage (Haloarcula, Haloferax, Haloquadratum, Halobacterium and Natromonas). There appears to be a separate duplication in Methanosphaera stadtmanae.
Probab=39.24 E-value=23 Score=27.75 Aligned_cols=27 Identities=19% Similarity=0.396 Sum_probs=20.2
Q ss_pred CCCCCCCCCCC-CCcccCCCCCCCCCCC
Q 024044 84 TCWNCNEAPKA-APFLFCESCRSVQPVD 110 (273)
Q Consensus 84 ~Cw~C~~~~~~-~~~~fC~~C~~iqp~~ 110 (273)
.|+.||..... ...+.|+.|+...+..
T Consensus 2 fC~~Cg~~l~~~~~~~~C~~C~~~~~~~ 29 (104)
T TIGR01384 2 FCPKCGSLMTPKNGVYVCPSCGYEKEKK 29 (104)
T ss_pred CCcccCcccccCCCeEECcCCCCccccc
Confidence 58999995432 4578999999977654
No 125
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=39.24 E-value=26 Score=39.56 Aligned_cols=34 Identities=15% Similarity=0.405 Sum_probs=20.5
Q ss_pred ccccccccCC-CCCCCCCCCCCCCC--CcccCCCCCC
Q 024044 72 FCSESAEKAS-NATCWNCNEAPKAA--PFLFCESCRS 105 (273)
Q Consensus 72 ~~~~~~~~~~-~~~Cw~C~~~~~~~--~~~fC~~C~~ 105 (273)
||........ ...|.+||...... -.-+||.|+.
T Consensus 681 fCP~CGs~te~vy~CPsCGaev~~des~a~~CP~CGt 717 (1337)
T PRK14714 681 RCPDCGTHTEPVYVCPDCGAEVPPDESGRVECPRCDV 717 (1337)
T ss_pred cCcccCCcCCCceeCccCCCccCCCccccccCCCCCC
Confidence 6665554332 24799999843211 1448999997
No 126
>PF01627 Hpt: Hpt domain; InterPro: IPR008207 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents a domain present at the N terminus in proteins which undergo autophosphorylation. The group includes, the gliding motility regulatory protein from Myxococcus xanthus and a number of bacterial chemotaxis proteins.; GO: 0004871 signal transducer activity, 0000160 two-component signal transduction system (phosphorelay); PDB: 3KYJ_A 3KYI_A 3IQT_A 1Y6D_A 2LD6_A 1TQG_A 2R25_A 1OXB_A 1QSP_B 1C03_B ....
Probab=38.80 E-value=85 Score=22.52 Aligned_cols=14 Identities=21% Similarity=0.489 Sum_probs=6.4
Q ss_pred ccCHHHHHHHHHHH
Q 024044 246 NRNFDEARVCIRRM 259 (273)
Q Consensus 246 ~~d~~~A~~~l~kL 259 (273)
.+|++.....+.+|
T Consensus 26 ~~d~~~l~~~~H~l 39 (90)
T PF01627_consen 26 QEDWEELRRLAHRL 39 (90)
T ss_dssp HCHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHH
Confidence 44444444444444
No 127
>TIGR02960 SigX5 RNA polymerase sigma-70 factor, TIGR02960 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family.
Probab=37.79 E-value=1.5e+02 Score=27.25 Aligned_cols=91 Identities=13% Similarity=0.089 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhcCcchhHHHHHHhhCCcCCC---CCCCCCHH----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 024044 163 SGRVIEAYRTLTNPLARAIYILRLEGVEVNE---DETVSEPE----LLMEIMEIREAVEDAADSQTLKEIQSQMQEKLIH 235 (273)
Q Consensus 163 s~~IN~AY~tL~dP~~Ra~YlL~L~G~~~~e---e~~~~d~e----fLmeiME~rE~leea~d~~~L~~l~~~~~~~i~~ 235 (273)
...+..+...|....+.+..|..+.|....| .-.+.... +-...-.+++.+.+...... .........+
T Consensus 133 ~~~l~~~l~~Lp~~~R~v~~L~~~~g~s~~EIA~~lgis~~tV~~~l~Rar~~Lr~~l~~~~~~~~----~~~~~~~~~~ 208 (324)
T TIGR02960 133 RLAFVAAIQYLPPRQRAVLLLRDVLGWRAAETAELLGTSTASVNSALQRARATLDEVGPSARDDQL----AQPPSPEEQD 208 (324)
T ss_pred HHHHHHHHHhCCHHHhhHhhhHHHhCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccccc----CCCCCHHHHH
Confidence 3458889999995544444444577876442 11111111 11112223333332211000 0001123456
Q ss_pred HHHHHHHHHhccCHHHHHHHHH
Q 024044 236 WGNSFADAYQNRNFDEARVCIR 257 (273)
Q Consensus 236 ~~~~l~~af~~~d~~~A~~~l~ 257 (273)
....+-++|+.||+++...++.
T Consensus 209 ~v~~~~~a~~~gD~~~l~~Lla 230 (324)
T TIGR02960 209 LLERYIAAFESYDLDALTALLH 230 (324)
T ss_pred HHHHHHHHHHcCCHHHHHHHhc
Confidence 6777888899999998776653
No 128
>PRK10445 endonuclease VIII; Provisional
Probab=37.58 E-value=20 Score=33.18 Aligned_cols=23 Identities=26% Similarity=0.876 Sum_probs=17.6
Q ss_pred CCCCCCCCCCCC-----CCCcccCCCCC
Q 024044 82 NATCWNCNEAPK-----AAPFLFCESCR 104 (273)
Q Consensus 82 ~~~Cw~C~~~~~-----~~~~~fC~~C~ 104 (273)
...|+.||..+. ....+|||.|.
T Consensus 235 g~~Cp~Cg~~I~~~~~~gR~t~~CP~CQ 262 (263)
T PRK10445 235 GEACERCGGIIEKTTLSSRPFYWCPGCQ 262 (263)
T ss_pred CCCCCCCCCEeEEEEECCCCcEECCCCc
Confidence 478999998542 35678999996
No 129
>COG0675 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=37.31 E-value=20 Score=32.52 Aligned_cols=26 Identities=23% Similarity=0.510 Sum_probs=19.3
Q ss_pred CCCCCCCCCCCCCCCcccCCCCCCCCCC
Q 024044 82 NATCWNCNEAPKAAPFLFCESCRSVQPV 109 (273)
Q Consensus 82 ~~~Cw~C~~~~~~~~~~fC~~C~~iqp~ 109 (273)
+..|..||. .....+.|+.||....-
T Consensus 309 S~~C~~cg~--~~~r~~~C~~cg~~~~r 334 (364)
T COG0675 309 SKTCPCCGH--LSGRLFKCPRCGFVHDR 334 (364)
T ss_pred cccccccCC--ccceeEECCCCCCeehh
Confidence 478999998 23456889999986544
No 130
>PRK09636 RNA polymerase sigma factor SigJ; Provisional
Probab=37.21 E-value=1.3e+02 Score=27.63 Aligned_cols=88 Identities=22% Similarity=0.197 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhcCcchhHHHHH-HhhCCcCCC---CCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Q 024044 163 SGRVIEAYRTLTNPLARAIYIL-RLEGVEVNE---DETVSEPELLMEIMEIREAVEDAADSQTLKEIQSQMQEKLIHWGN 238 (273)
Q Consensus 163 s~~IN~AY~tL~dP~~Ra~YlL-~L~G~~~~e---e~~~~d~efLmeiME~rE~leea~d~~~L~~l~~~~~~~i~~~~~ 238 (273)
...+..+.+.|. |..|+.++| .+.|....| .-.......-.-+.-.+..|.+...... --.+.-.++..
T Consensus 106 ~~~l~~~l~~L~-~~~R~v~~L~~~~g~s~~EIA~~lg~s~~tVk~~l~RAr~~Lr~~~~~~~------~~~~~~~~~v~ 178 (293)
T PRK09636 106 SLALMLALERLS-PLERAAFLLHDVFGVPFDEIASTLGRSPAACRQLASRARKHVRAARPRFP------VSDEEGAELVE 178 (293)
T ss_pred HHHHHHHHHhCC-HHHHHHHHHHHHhCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCCCC------CCchHHHHHHH
Confidence 456788888888 666666666 467776432 1111111111111112222222100000 00112345677
Q ss_pred HHHHHHhccCHHHHHHHHH
Q 024044 239 SFADAYQNRNFDEARVCIR 257 (273)
Q Consensus 239 ~l~~af~~~d~~~A~~~l~ 257 (273)
.+-++|+.||++.+..++.
T Consensus 179 ~f~~A~~~gD~~~l~~Lla 197 (293)
T PRK09636 179 AFFAALASGDLDALVALLA 197 (293)
T ss_pred HHHHHHHhCCHHHHHHHHh
Confidence 8889999999998877654
No 131
>COG1802 GntR Transcriptional regulators [Transcription]
Probab=37.06 E-value=2.1e+02 Score=25.16 Aligned_cols=52 Identities=27% Similarity=0.360 Sum_probs=40.0
Q ss_pred HHHHHHHHhcCcchhHHHHHHhhCC-cCCCC-C---CCCCHHHHHHHHHHHHHHHhc
Q 024044 165 RVIEAYRTLTNPLARAIYILRLEGV-EVNED-E---TVSEPELLMEIMEIREAVEDA 216 (273)
Q Consensus 165 ~IN~AY~tL~dP~~Ra~YlL~L~G~-~~~ee-~---~~~d~efLmeiME~rE~leea 216 (273)
.|-+.|.+=.-|++-|.--|.-.|. ..... + ...+.+.+.++.++|+.||.+
T Consensus 44 ~La~~~gvSrtPVReAL~rL~~eGlv~~~p~rG~~V~~~~~~~~~ei~~~R~~lE~~ 100 (230)
T COG1802 44 ELAEELGVSRTPVREALRRLEAEGLVEIEPNRGAFVAPLSLAEAREIFEVRELLEGA 100 (230)
T ss_pred HHHHHhCCCCccHHHHHHHHHHCCCeEecCCCCCeeCCCCHHHHHHHHHHHHHHHHH
Confidence 4778888888899999888877774 33222 2 346789999999999999975
No 132
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=36.73 E-value=2.9e+02 Score=24.23 Aligned_cols=50 Identities=18% Similarity=0.206 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhHHHHHHHHH
Q 024044 221 TLKEIQSQMQEKLIHWGNSFADAYQNRNFDEARVCIRRMTYYHRVNEEIA 270 (273)
Q Consensus 221 ~L~~l~~~~~~~i~~~~~~l~~af~~~d~~~A~~~l~kLkYl~ki~~eI~ 270 (273)
.++.-..+....+..+......|+..|+=+-|+.++.+..-+......++
T Consensus 55 ~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~ 104 (221)
T PF04012_consen 55 RLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLE 104 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555556677888889999999999999999998888887777665554
No 133
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=36.71 E-value=12 Score=40.56 Aligned_cols=19 Identities=16% Similarity=0.361 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhCCCCCC
Q 024044 131 KLEGKYKDWQKRIHPDLVH 149 (273)
Q Consensus 131 ~Lk~~Yr~Lqk~~HPDk~~ 149 (273)
.+.+++.++--.-.||.+.
T Consensus 715 ~~~~A~e~lg~r~~~~~~K 733 (900)
T PF03833_consen 715 EYDRALENLGERENPDELK 733 (900)
T ss_dssp -------------------
T ss_pred HHHHHHHhhccccchhhhh
Confidence 4566666666655566654
No 134
>PRK01103 formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase; Validated
Probab=36.57 E-value=21 Score=33.12 Aligned_cols=24 Identities=21% Similarity=0.728 Sum_probs=18.0
Q ss_pred CCCCCCCCCCCC-----CCCcccCCCCCC
Q 024044 82 NATCWNCNEAPK-----AAPFLFCESCRS 105 (273)
Q Consensus 82 ~~~Cw~C~~~~~-----~~~~~fC~~C~~ 105 (273)
...|+.||..+. ....+|||.|..
T Consensus 245 g~pC~~Cg~~I~~~~~~gR~t~~CP~CQ~ 273 (274)
T PRK01103 245 GEPCRRCGTPIEKIKQGGRSTFFCPRCQK 273 (274)
T ss_pred CCCCCCCCCeeEEEEECCCCcEECcCCCC
Confidence 368999998542 346789999974
No 135
>PF00098 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the CysCysHisCys (CCHC) type zinc finger domains, and have the sequence: C-X2-C-X4-H-X4-C where X can be any amino acid, and number indicates the number of residues. These 18 residues CCHC zinc finger domains are mainly found in the nucleocapsid protein of retroviruses. It is required for viral genome packaging and for early infection process [, , ]. It is also found in eukaryotic proteins involved in RNA binding or single-stranded DNA binding []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 2L44_A 1A1T_A 1WWG_A 1U6P_A 1WWD_A 1WWE_A 1A6B_B 1F6U_A 1MFS_A 1NCP_C ....
Probab=36.22 E-value=37 Score=18.86 Aligned_cols=9 Identities=44% Similarity=1.265 Sum_probs=7.1
Q ss_pred CCCCCCCCC
Q 024044 83 ATCWNCNEA 91 (273)
Q Consensus 83 ~~Cw~C~~~ 91 (273)
+.||+|+..
T Consensus 1 ~~C~~C~~~ 9 (18)
T PF00098_consen 1 RKCFNCGEP 9 (18)
T ss_dssp SBCTTTSCS
T ss_pred CcCcCCCCc
Confidence 369999884
No 136
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=36.02 E-value=23 Score=28.81 Aligned_cols=25 Identities=16% Similarity=0.336 Sum_probs=16.5
Q ss_pred CCCCCCCCCCCC-CCc-ccCCCCCCCC
Q 024044 83 ATCWNCNEAPKA-APF-LFCESCRSVQ 107 (273)
Q Consensus 83 ~~Cw~C~~~~~~-~~~-~fC~~C~~iq 107 (273)
..|..|+..... ... +.||.|+...
T Consensus 71 ~~C~~Cg~~~~~~~~~~~~CP~Cgs~~ 97 (114)
T PRK03681 71 CWCETCQQYVTLLTQRVRRCPQCHGDM 97 (114)
T ss_pred EEcccCCCeeecCCccCCcCcCcCCCC
Confidence 679999984322 222 4599999743
No 137
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=35.85 E-value=31 Score=36.81 Aligned_cols=15 Identities=7% Similarity=0.124 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHH
Q 024044 200 PELLMEIMEIREAVE 214 (273)
Q Consensus 200 ~efLmeiME~rE~le 214 (273)
..|..+.|+.|++..
T Consensus 617 ~~F~~~El~~Rk~~~ 631 (730)
T COG1198 617 EAFYEQELAERKELG 631 (730)
T ss_pred HHHHHHHHHHHHhcC
Confidence 468888888887654
No 138
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=35.62 E-value=25 Score=25.36 Aligned_cols=27 Identities=22% Similarity=0.502 Sum_probs=18.8
Q ss_pred CCCCCCCCCCCC---CCCcccCCCCCCCCC
Q 024044 82 NATCWNCNEAPK---AAPFLFCESCRSVQP 108 (273)
Q Consensus 82 ~~~Cw~C~~~~~---~~~~~fC~~C~~iqp 108 (273)
+..|+.||.... ....+.|+.||....
T Consensus 28 Sq~C~~CG~~~~~~~~~r~~~C~~Cg~~~~ 57 (69)
T PF07282_consen 28 SQTCPRCGHRNKKRRSGRVFTCPNCGFEMD 57 (69)
T ss_pred ccCccCcccccccccccceEEcCCCCCEEC
Confidence 367999998533 234588999997543
No 139
>PF06044 DRP: Dam-replacing family; InterPro: IPR010324 Dam-replacing protein (DRP) is a restriction endonuclease that is flanked by pseudo-transposable small repeat elements. The replacement of Dam-methylase by DRP allows phase variation through slippage-like mechanisms in several pathogenic isolates of Neisseria meningitidis [].; PDB: 4ESJ_A.
Probab=35.53 E-value=15 Score=34.16 Aligned_cols=24 Identities=29% Similarity=0.843 Sum_probs=9.5
Q ss_pred CCCCCCCCCCC-------CCCCcccCCCCCC
Q 024044 82 NATCWNCNEAP-------KAAPFLFCESCRS 105 (273)
Q Consensus 82 ~~~Cw~C~~~~-------~~~~~~fC~~C~~ 105 (273)
...|++||..+ .+...|+|+.|+.
T Consensus 31 n~yCP~Cg~~~L~~f~NN~PVaDF~C~~C~e 61 (254)
T PF06044_consen 31 NMYCPNCGSKPLSKFENNRPVADFYCPNCNE 61 (254)
T ss_dssp H---TTT--SS-EE--------EEE-TTT--
T ss_pred CCcCCCCCChhHhhccCCCccceeECCCCch
Confidence 36899999863 2345689999985
No 140
>TIGR00577 fpg formamidopyrimidine-DNA glycosylase (fpg). All proteins in the FPG family with known functions are FAPY-DNA glycosylases that function in base excision repair. Homologous to endonuclease VIII (nei). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=35.05 E-value=22 Score=32.99 Aligned_cols=23 Identities=22% Similarity=0.679 Sum_probs=17.4
Q ss_pred CCCCCCCCCCCC-----CCCcccCCCCC
Q 024044 82 NATCWNCNEAPK-----AAPFLFCESCR 104 (273)
Q Consensus 82 ~~~Cw~C~~~~~-----~~~~~fC~~C~ 104 (273)
...|+.||..+. ....+|||.|.
T Consensus 245 g~pC~~Cg~~I~~~~~~gR~t~~CP~CQ 272 (272)
T TIGR00577 245 GEPCRRCGTPIEKIKVGGRGTHFCPQCQ 272 (272)
T ss_pred CCCCCCCCCeeEEEEECCCCCEECCCCC
Confidence 368999998642 35678999994
No 141
>PRK12286 rpmF 50S ribosomal protein L32; Reviewed
Probab=34.91 E-value=25 Score=25.42 Aligned_cols=21 Identities=38% Similarity=0.817 Sum_probs=15.9
Q ss_pred CCCCCCCCCCCCCCcccCCCCCC
Q 024044 83 ATCWNCNEAPKAAPFLFCESCRS 105 (273)
Q Consensus 83 ~~Cw~C~~~~~~~~~~fC~~C~~ 105 (273)
..|.+||... .+-..|+.||.
T Consensus 28 ~~C~~CG~~~--~~H~vC~~CG~ 48 (57)
T PRK12286 28 VECPNCGEPK--LPHRVCPSCGY 48 (57)
T ss_pred eECCCCCCcc--CCeEECCCCCc
Confidence 6799999953 34567999985
No 142
>COG0266 Nei Formamidopyrimidine-DNA glycosylase [DNA replication, recombination, and repair]
Probab=34.20 E-value=23 Score=33.36 Aligned_cols=23 Identities=17% Similarity=0.719 Sum_probs=18.3
Q ss_pred CCCCCCCCCCCC-----CCCcccCCCCC
Q 024044 82 NATCWNCNEAPK-----AAPFLFCESCR 104 (273)
Q Consensus 82 ~~~Cw~C~~~~~-----~~~~~fC~~C~ 104 (273)
...|..||..+. ..+.+|||.|.
T Consensus 245 GepC~~CGt~I~k~~~~gR~t~~CP~CQ 272 (273)
T COG0266 245 GEPCRRCGTPIEKIKLGGRSTFYCPVCQ 272 (273)
T ss_pred CCCCCccCCEeEEEEEcCCcCEeCCCCC
Confidence 478999999643 45789999996
No 143
>PRK13945 formamidopyrimidine-DNA glycosylase; Provisional
Probab=33.88 E-value=26 Score=32.74 Aligned_cols=23 Identities=17% Similarity=0.670 Sum_probs=17.7
Q ss_pred CCCCCCCCCCCC-----CCCcccCCCCC
Q 024044 82 NATCWNCNEAPK-----AAPFLFCESCR 104 (273)
Q Consensus 82 ~~~Cw~C~~~~~-----~~~~~fC~~C~ 104 (273)
...|+.||..+. ....++||.|.
T Consensus 254 g~pC~~Cg~~I~~~~~~gR~t~~CP~CQ 281 (282)
T PRK13945 254 GKPCRKCGTPIERIKLAGRSTHWCPNCQ 281 (282)
T ss_pred cCCCCcCCCeeEEEEECCCccEECCCCc
Confidence 478999998642 35678999996
No 144
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=33.66 E-value=25 Score=28.72 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=15.8
Q ss_pred CCCCCCCCCCCCC-Cccc-CCCCCCC
Q 024044 83 ATCWNCNEAPKAA-PFLF-CESCRSV 106 (273)
Q Consensus 83 ~~Cw~C~~~~~~~-~~~f-C~~C~~i 106 (273)
..|-.|+...... ..++ ||.|+..
T Consensus 72 ~~C~~Cg~~~~~~~~~~~~CP~Cgs~ 97 (117)
T PRK00564 72 LECKDCSHVFKPNALDYGVCEKCHSK 97 (117)
T ss_pred EEhhhCCCccccCCccCCcCcCCCCC
Confidence 5788898753322 2344 9999974
No 145
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=32.79 E-value=5.1e+02 Score=29.20 Aligned_cols=59 Identities=15% Similarity=0.259 Sum_probs=39.4
Q ss_pred cCCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHhh
Q 024044 123 KKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLARAIYILRLE 187 (273)
Q Consensus 123 ~~f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~Ra~YlL~L~ 187 (273)
|.|..+.+.|+.+...+...+.= ...+.+..++....+|++|+.+......+.|-+...
T Consensus 596 pd~~~~ee~L~~~l~~~~~~l~~------~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~ 654 (1201)
T PF12128_consen 596 PDYAASEEELRERLEQAEDQLQS------AEERQEELEKQLKQINKKIEELKREITQAEQELKQA 654 (1201)
T ss_pred chhhcChHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555777888877666655421 122334455666888999999999999999876543
No 146
>PF01783 Ribosomal_L32p: Ribosomal L32p protein family; InterPro: IPR002677 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L32p is part of the 50S ribosomal subunit. This family is found in both prokaryotes and eukaryotes. Ribosomal protein L32 of yeast binds to and regulates the splicing and the translation of the transcript of its own gene [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0015934 large ribosomal subunit; PDB: 3PYT_2 3F1F_5 3PYV_2 3D5B_5 3MRZ_2 3D5D_5 3F1H_5 1VSP_Y 3PYR_2 3MS1_2 ....
Probab=32.57 E-value=24 Score=25.19 Aligned_cols=21 Identities=38% Similarity=0.823 Sum_probs=15.6
Q ss_pred CCCCCCCCCCCCCCcccCCCCCC
Q 024044 83 ATCWNCNEAPKAAPFLFCESCRS 105 (273)
Q Consensus 83 ~~Cw~C~~~~~~~~~~fC~~C~~ 105 (273)
..|.+||.. ..+-..|++||.
T Consensus 27 ~~c~~cg~~--~~~H~vc~~cG~ 47 (56)
T PF01783_consen 27 VKCPNCGEP--KLPHRVCPSCGY 47 (56)
T ss_dssp EESSSSSSE--ESTTSBCTTTBB
T ss_pred eeeccCCCE--ecccEeeCCCCe
Confidence 679999984 334578999974
No 147
>PRK14810 formamidopyrimidine-DNA glycosylase; Provisional
Probab=32.36 E-value=27 Score=32.51 Aligned_cols=23 Identities=22% Similarity=0.756 Sum_probs=17.6
Q ss_pred CCCCCCCCCCCC-----CCCcccCCCCC
Q 024044 82 NATCWNCNEAPK-----AAPFLFCESCR 104 (273)
Q Consensus 82 ~~~Cw~C~~~~~-----~~~~~fC~~C~ 104 (273)
...|..||..+. ....+|||.|.
T Consensus 244 g~pCprCG~~I~~~~~~gR~t~~CP~CQ 271 (272)
T PRK14810 244 GEPCLNCKTPIRRVVVAGRSSHYCPHCQ 271 (272)
T ss_pred CCcCCCCCCeeEEEEECCCccEECcCCc
Confidence 478999998542 35678999996
No 148
>PF01895 PhoU: PhoU domain; InterPro: IPR008170 This family contains phosphate regulatory proteins including PhoU. PhoU proteins are known to play a role in the regulation of phosphate uptake. The PhoU domain is composed of a three helix bundle []. The PhoU protein contains two copies of this domain. The domain binds to an iron cluster via its conserved E/DXXXD motif. Deletion of PhoU activates constitutive expression of the phosphate ABC transporter and allows phosphate transport, but causes a growth defect; suggesting that the protein has some secondary function []. ; PDB: 2I0M_A 1T72_B 1T8B_A 1SUM_B 1VCT_A 2BKN_A 2BKP_A 2BKO_A.
Probab=32.25 E-value=1.9e+02 Score=20.57 Aligned_cols=50 Identities=10% Similarity=0.157 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-cC---HHHHHHHHHHHHhHHHHHHHHH
Q 024044 221 TLKEIQSQMQEKLIHWGNSFADAYQN-RN---FDEARVCIRRMTYYHRVNEEIA 270 (273)
Q Consensus 221 ~L~~l~~~~~~~i~~~~~~l~~af~~-~d---~~~A~~~l~kLkYl~ki~~eI~ 270 (273)
++.+...++++...++.+.+-..... ++ .......+.-++++++|-+-+.
T Consensus 29 ~i~~~e~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lERigD~~~ 82 (88)
T PF01895_consen 29 EIIQLEEEIDELYREIRRQILKILKNQNPLEELRELVGLLRIARDLERIGDHAV 82 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555554444432 22 4456777888888888877653
No 149
>PHA00626 hypothetical protein
Probab=32.18 E-value=28 Score=25.51 Aligned_cols=13 Identities=15% Similarity=0.317 Sum_probs=9.8
Q ss_pred CCcccCCCCCCCC
Q 024044 95 APFLFCESCRSVQ 107 (273)
Q Consensus 95 ~~~~fC~~C~~iq 107 (273)
++.+.|+.|+.-.
T Consensus 21 snrYkCkdCGY~f 33 (59)
T PHA00626 21 SDDYVCCDCGYND 33 (59)
T ss_pred CcceEcCCCCCee
Confidence 5678899998743
No 150
>PRK01919 tatB sec-independent translocase; Provisional
Probab=31.90 E-value=1.3e+02 Score=26.57 Aligned_cols=24 Identities=13% Similarity=0.461 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 024044 222 LKEIQSQMQEKLIHWGNSFADAYQ 245 (273)
Q Consensus 222 L~~l~~~~~~~i~~~~~~l~~af~ 245 (273)
...+...+.+..++..+.+.+++.
T Consensus 70 ~~~v~~si~~~~~~~~~~~~~~~~ 93 (169)
T PRK01919 70 ARDVENTIHDNLSEHESDLNDAWN 93 (169)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHh
Confidence 334555555555666666666554
No 151
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=31.30 E-value=28 Score=25.72 Aligned_cols=8 Identities=50% Similarity=0.982 Sum_probs=4.7
Q ss_pred CCCCCCCC
Q 024044 83 ATCWNCNE 90 (273)
Q Consensus 83 ~~Cw~C~~ 90 (273)
-.|++||.
T Consensus 28 F~CPnCGe 35 (61)
T COG2888 28 FPCPNCGE 35 (61)
T ss_pred eeCCCCCc
Confidence 45666663
No 152
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=31.29 E-value=60 Score=30.58 Aligned_cols=51 Identities=20% Similarity=0.286 Sum_probs=36.4
Q ss_pred CHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchh
Q 024044 128 GNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNPLAR 179 (273)
Q Consensus 128 d~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~dP~~R 179 (273)
....|...|+......|||+... ....-....+....|.+||.+|++...|
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~k~i~ka~~i~~~~~~~ 55 (335)
T KOG0724|consen 5 SEDELRLAYREMALKSHPEKKSF-YEKLSLWTEEEFKKIEKALAILDDDEPR 55 (335)
T ss_pred cHHHHHHHHHHHhhhcCcHHHHH-HHHhhhhHHHHHHHHHHHHHHHhccccc
Confidence 45678899999999999999753 0111113345678999999999985543
No 153
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=30.89 E-value=18 Score=22.97 Aligned_cols=23 Identities=22% Similarity=0.600 Sum_probs=11.7
Q ss_pred CCCCCCCCC--CCCCCcccCCCCCC
Q 024044 83 ATCWNCNEA--PKAAPFLFCESCRS 105 (273)
Q Consensus 83 ~~Cw~C~~~--~~~~~~~fC~~C~~ 105 (273)
+.|+.|+.. ......+.|+.|+.
T Consensus 3 p~Cp~C~se~~y~D~~~~vCp~C~~ 27 (30)
T PF08274_consen 3 PKCPLCGSEYTYEDGELLVCPECGH 27 (30)
T ss_dssp ---TTT-----EE-SSSEEETTTTE
T ss_pred CCCCCCCCcceeccCCEEeCCcccc
Confidence 578888873 23455688999975
No 154
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=30.53 E-value=58 Score=29.03 Aligned_cols=61 Identities=13% Similarity=0.177 Sum_probs=39.8
Q ss_pred CCCCCCCCCCCCC-CCcccCCCCCCCCCCC-CCCCcccccCcccCCCCCHHHHHHHHHHHHHh
Q 024044 82 NATCWNCNEAPKA-APFLFCESCRSVQPVD-HSVDYFQIFGLGKKYEIGNEKLEGKYKDWQKR 142 (273)
Q Consensus 82 ~~~Cw~C~~~~~~-~~~~fC~~C~~iqp~~-~~~nyFellgl~~~f~Id~~~Lk~~Yr~Lqk~ 142 (273)
...|+.|++.... ...--|+.|+----+. .....+.+||+..+..|....-+..|..+...
T Consensus 99 ~~~C~~C~G~G~~i~~~~~C~~C~G~G~v~~~~~~~~k~~g~~~g~~it~~~~~~~~~~~~~~ 161 (186)
T TIGR02642 99 SCKCPRCRGTGLIQRRQRECDTCAGTGRFRPTVEDLLKSFGVDSGAAIVLKDNWPQVVTSVRA 161 (186)
T ss_pred CCcCCCCCCeeEEecCCCCCCCCCCccEEeeeEEEEEEeeeccCCceeeHHHhHHHHHHHHHH
Confidence 4789999885211 1113588887522221 23578888999888888888887777766544
No 155
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=30.51 E-value=36 Score=23.24 Aligned_cols=22 Identities=18% Similarity=0.603 Sum_probs=13.0
Q ss_pred CCCCCCCCCC--CCCcccCCCCCC
Q 024044 84 TCWNCNEAPK--AAPFLFCESCRS 105 (273)
Q Consensus 84 ~Cw~C~~~~~--~~~~~fC~~C~~ 105 (273)
.|..||.... ......|+.||.
T Consensus 4 ~C~~Cg~~~~~~~~~~irC~~CG~ 27 (44)
T smart00659 4 ICGECGRENEIKSKDVVRCRECGY 27 (44)
T ss_pred ECCCCCCEeecCCCCceECCCCCc
Confidence 4667777322 234566777775
No 156
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=30.42 E-value=33 Score=21.95 Aligned_cols=23 Identities=22% Similarity=0.533 Sum_probs=13.2
Q ss_pred CCCCCCCCCCC--------CCCcccCCCCCC
Q 024044 83 ATCWNCNEAPK--------AAPFLFCESCRS 105 (273)
Q Consensus 83 ~~Cw~C~~~~~--------~~~~~fC~~C~~ 105 (273)
..|++|+.... ......|++|+.
T Consensus 3 ~~CP~C~~~~~v~~~~~~~~~~~v~C~~C~~ 33 (38)
T TIGR02098 3 IQCPNCKTSFRVVDSQLGANGGKVRCGKCGH 33 (38)
T ss_pred EECCCCCCEEEeCHHHcCCCCCEEECCCCCC
Confidence 35777777210 122367888876
No 157
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=30.39 E-value=34 Score=23.87 Aligned_cols=27 Identities=26% Similarity=0.619 Sum_probs=16.8
Q ss_pred CCCCCCCCCCC---------CCC-cccCCCCCCCCCC
Q 024044 83 ATCWNCNEAPK---------AAP-FLFCESCRSVQPV 109 (273)
Q Consensus 83 ~~Cw~C~~~~~---------~~~-~~fC~~C~~iqp~ 109 (273)
.+|+-||.... ... .+.|..|++..|.
T Consensus 2 kPCPfCGg~~~~~~~~~~~~~~~~~~~C~~Cga~~~~ 38 (53)
T TIGR03655 2 KPCPFCGGADVYLRRGFDPLDLSHYFECSTCGASGPV 38 (53)
T ss_pred CCCCCCCCcceeeEeccCCCCCEEEEECCCCCCCccc
Confidence 36888887432 011 2359999987775
No 158
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=30.31 E-value=2.5e+02 Score=26.12 Aligned_cols=31 Identities=6% Similarity=0.068 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhH
Q 024044 232 KLIHWGNSFADAYQNRNFDEARVCIRRMTYY 262 (273)
Q Consensus 232 ~i~~~~~~l~~af~~~d~~~A~~~l~kLkYl 262 (273)
.+.+....+...++.|||.+|.+++...+=.
T Consensus 126 ~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~ 156 (291)
T PF10475_consen 126 TVQQTQSRLQELLEEGDYPGALDLIEECQQL 156 (291)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 4556677788889999999999888776543
No 159
>PRK09635 sigI RNA polymerase sigma factor SigI; Provisional
Probab=30.26 E-value=2.5e+02 Score=26.16 Aligned_cols=91 Identities=12% Similarity=0.139 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHhcCcchhHHHHH-HhhCCcCCCC---CCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 024044 159 AAEQSGRVIEAYRTLTNPLARAIYIL-RLEGVEVNED---ETVSEPELLMEIMEIREAVEDAADSQTLKEIQSQMQEKLI 234 (273)
Q Consensus 159 a~~~s~~IN~AY~tL~dP~~Ra~YlL-~L~G~~~~ee---~~~~d~efLmeiME~rE~leea~d~~~L~~l~~~~~~~i~ 234 (273)
..+....+..+.+.|. |..|+.++| ...|.+..|- -.......-.-+--.+..|.+..-... ...+.-.
T Consensus 105 ~~e~~~al~~~L~~L~-p~~R~vf~L~~~~g~s~~EIA~~Lgis~~tVr~~l~RAr~~Lr~~~~~~~------~~~~~~~ 177 (290)
T PRK09635 105 DDEVRLALLIMLERLG-PAERVVFVLHEIFGLPYQQIATTIGSQASTCRQLAHRARRKINESRIAAS------VEPAQHR 177 (290)
T ss_pred HHHHHHHHHHHHHhCC-HHHHHHhhHHHHhCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhhCCCCC------CChHHHH
Confidence 3344567888888888 667777776 4677765431 111111111111223333333210000 0012345
Q ss_pred HHHHHHHHHHhccCHHHHHHHH
Q 024044 235 HWGNSFADAYQNRNFDEARVCI 256 (273)
Q Consensus 235 ~~~~~l~~af~~~d~~~A~~~l 256 (273)
++...+-++++.||+++...+|
T Consensus 178 ~~~~~f~~a~~~gd~~~l~~ll 199 (290)
T PRK09635 178 VVTRAFIEACSNGDLDTLLEVL 199 (290)
T ss_pred HHHHHHHHHHHhCCHHHHHHHh
Confidence 7788899999999999887776
No 160
>TIGR01031 rpmF_bact ribosomal protein L32. This protein describes bacterial ribosomal protein L32. The noise cutoff is set low enough to include the equivalent protein from mitochondria and chloroplasts. No related proteins from the Archaea nor from the eukaryotic cytosol are detected by this model. This model is a fragment model; the putative L32 of some species shows similarity only toward the N-terminus.
Probab=30.18 E-value=30 Score=24.73 Aligned_cols=21 Identities=38% Similarity=0.781 Sum_probs=15.9
Q ss_pred CCCCCCCCCCCCCCcccCCCCCC
Q 024044 83 ATCWNCNEAPKAAPFLFCESCRS 105 (273)
Q Consensus 83 ~~Cw~C~~~~~~~~~~fC~~C~~ 105 (273)
..|.+||.. ..+-..|+.||.
T Consensus 27 ~~C~~cG~~--~~~H~vc~~cG~ 47 (55)
T TIGR01031 27 VVCPNCGEF--KLPHRVCPSCGY 47 (55)
T ss_pred eECCCCCCc--ccCeeECCccCe
Confidence 679999985 334567999984
No 161
>PF03461 TRCF: TRCF domain; InterPro: IPR005118 This domain is found in proteins necessary for strand-specific repair in DNA such as TRCF in Escherichia coli. A lesion in the template strand blocks the RNA polymerase complex (RNAP). The RNAP-DNA-RNA complex is specifically recognised by the transcription-repair-coupling factor (TRCF) which releases RNAP and the truncated transcript.; GO: 0003684 damaged DNA binding, 0004386 helicase activity, 0005524 ATP binding, 0006281 DNA repair; PDB: 2QSR_A 2EYQ_A.
Probab=30.12 E-value=1.1e+02 Score=24.00 Aligned_cols=40 Identities=10% Similarity=0.244 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024044 204 MEIMEIREAVEDAADSQTLKEIQSQMQEKLIHWGNSFADA 243 (273)
Q Consensus 204 meiME~rE~leea~d~~~L~~l~~~~~~~i~~~~~~l~~a 243 (273)
.+=|++...|..+.+.++|+++..++..+.-..=..+...
T Consensus 17 ~~Rl~~Yrrl~~~~~~~el~~l~~El~DRFG~~P~ev~~L 56 (101)
T PF03461_consen 17 DERLELYRRLASAESEEELEDLREELIDRFGPLPEEVENL 56 (101)
T ss_dssp HHHHHHHHHHHC--SHHHHHHHHHHHHHHH-S--HHHHHH
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHHHHHcCCCcHHHHHH
Confidence 3668899999999999999999888877654444444433
No 162
>PF14276 DUF4363: Domain of unknown function (DUF4363)
Probab=29.51 E-value=1e+02 Score=24.67 Aligned_cols=43 Identities=7% Similarity=0.173 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhHHHH
Q 024044 223 KEIQSQMQEKLIHWGNSFADAYQNRNFDEARVCIRRMTYYHRV 265 (273)
Q Consensus 223 ~~l~~~~~~~i~~~~~~l~~af~~~d~~~A~~~l~kLkYl~ki 265 (273)
.+...++.+..++..+.+.-..+..+++..-..+.||+=|-..
T Consensus 48 ~~~~~~l~~~W~k~~~~~~~~~~h~eid~i~~sl~rl~~~i~~ 90 (121)
T PF14276_consen 48 YKETEELEKEWDKNKKRWSILIEHQEIDNIDISLARLKGYIEA 90 (121)
T ss_pred HHHHHHHHHHHHhhchheeeeecHHHHHHHHHHHHHHHHHHHC
Confidence 3334444455555555554455556666666666666655443
No 163
>TIGR02957 SigX4 RNA polymerase sigma-70 factor, TIGR02957 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building and bidirectional best hits, to represent a conserved family. This family is found in a limited number of bacterial lineages. This family includes apparent paralogous expansion in Streptomyces coelicolor A3(2), and multiple copies in Mycobacterium smegmatis MC2, Streptomyces avermitilis MA-4680 and Nocardia farcinica IFM10152.
Probab=29.40 E-value=1.7e+02 Score=26.79 Aligned_cols=89 Identities=19% Similarity=0.173 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHhcCcchhHHHHHH-hhCCcCCCC---CCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Q 024044 162 QSGRVIEAYRTLTNPLARAIYILR-LEGVEVNED---ETVSEPELLMEIMEIREAVEDAADSQTLKEIQSQMQEKLIHWG 237 (273)
Q Consensus 162 ~s~~IN~AY~tL~dP~~Ra~YlL~-L~G~~~~ee---~~~~d~efLmeiME~rE~leea~d~~~L~~l~~~~~~~i~~~~ 237 (273)
....+..+.+.|+ |..|+.++|. ..|.+..|- -.......-.-+--.+..|.+...... ...+.-.++.
T Consensus 98 ~~~~l~~~l~~L~-~~~R~v~~L~~~~g~s~~EIA~~lg~s~~tVr~~l~RAr~~Lr~~~~~~~------~~~~~~~~~~ 170 (281)
T TIGR02957 98 LSMAYLLLLERLS-PLERAVFVLREVFDYPYEEIASIVGKSEANCRQLVSRARRHLDARRPRFE------VSREESRQLL 170 (281)
T ss_pred HHHHHHHHHhhCC-HHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCCCC------CChHHHHHHH
Confidence 3445677888887 7778877764 678765431 111111111111222333322110000 0012344677
Q ss_pred HHHHHHHhccCHHHHHHHHH
Q 024044 238 NSFADAYQNRNFDEARVCIR 257 (273)
Q Consensus 238 ~~l~~af~~~d~~~A~~~l~ 257 (273)
..+-+++..||+++...+|.
T Consensus 171 ~~f~~a~~~gD~~~l~~lL~ 190 (281)
T TIGR02957 171 ERFVEAAQTGDLDGLLELLA 190 (281)
T ss_pred HHHHHHHHhCCHHHHHHHHh
Confidence 88889999999998877664
No 164
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=29.36 E-value=6.4e+02 Score=26.96 Aligned_cols=46 Identities=20% Similarity=0.216 Sum_probs=31.2
Q ss_pred CHHHHHHHHHHHHH-------hhCCCCCCCCCHHHHHHH---HHHHHHHHHHHHHh
Q 024044 128 GNEKLEGKYKDWQK-------RIHPDLVHSKSEKEREYA---AEQSGRVIEAYRTL 173 (273)
Q Consensus 128 d~~~Lk~~Yr~Lqk-------~~HPDk~~~~~~~E~~~a---~~~s~~IN~AY~tL 173 (273)
..+.|-+.|+.|+. .++||..........+.+ ......+|+|+++|
T Consensus 159 ~q~~LA~~y~~La~yL~aka~lf~p~~~~~~~~~~~~~a~~n~~lv~~ln~ar~~L 214 (704)
T TIGR01666 159 VQENLAKAFCQLAEYLETKSCFFDPDEVAEIQKKHLNFAMKNANVVTALNQVKTAL 214 (704)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCccchhhhHHHHHHHHhHHHHHHHHHHHHHH
Confidence 57889999988765 578988655433333333 44566778888888
No 165
>PF14319 Zn_Tnp_IS91: Transposase zinc-binding domain
Probab=29.09 E-value=40 Score=27.30 Aligned_cols=25 Identities=20% Similarity=0.541 Sum_probs=13.9
Q ss_pred CCCCCCCCCC---CCCCcccCCCCCCCC
Q 024044 83 ATCWNCNEAP---KAAPFLFCESCRSVQ 107 (273)
Q Consensus 83 ~~Cw~C~~~~---~~~~~~fC~~C~~iq 107 (273)
-.|.+||..- ..-..-+||+|+...
T Consensus 43 ~~C~~Cg~~~~~~~SCk~R~CP~C~~~~ 70 (111)
T PF14319_consen 43 YRCEDCGHEKIVYNSCKNRHCPSCQAKA 70 (111)
T ss_pred eecCCCCceEEecCcccCcCCCCCCChH
Confidence 4566666631 112224788888753
No 166
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=29.07 E-value=45 Score=35.63 Aligned_cols=20 Identities=10% Similarity=0.179 Sum_probs=10.0
Q ss_pred CHHHHHHHHHHHHHhhCCCC
Q 024044 128 GNEKLEGKYKDWQKRIHPDL 147 (273)
Q Consensus 128 d~~~Lk~~Yr~Lqk~~HPDk 147 (273)
|...-+.+.+.+-..+|+-.
T Consensus 515 Dtt~~k~~~~~~l~~~~~ge 534 (730)
T COG1198 515 DTTRRKGALEDLLDQFANGE 534 (730)
T ss_pred ccccchhhHHHHHHHHhCCC
Confidence 44444445555555555543
No 167
>cd00088 HPT Histidine Phosphotransfer domain, involved in signalling through a two part component systems in which an autophosphorylating histidine protein kinase serves as a phosphoryl donor to a response regulator protein; the response regulator protein is modulated by phosphorylation and dephosphorylation of a conserved aspartic acid residue; two-component proteins are abundant in most eubacteria; In E. coli there are 62 two-component proteins involved in a variety of processes such as chemotaxis, osmoregulation, metabolism and transport 1; also present in both Gram positive and Gram negative pathogenic bacteria where they regulate basic housekeeping functions and control expression of toxins and other proteins important for pathogenesis; in archaea and eukaryotes, two-component pathways constitute a very small number of all signaling systems; in fungi they mediate environmental stress responses and, in pathogenic yeast, hyphal development. In Dictyostelium and in plants, they are i
Probab=28.86 E-value=1.1e+02 Score=22.76 Aligned_cols=9 Identities=11% Similarity=0.139 Sum_probs=3.3
Q ss_pred CHHHHHHHH
Q 024044 248 NFDEARVCI 256 (273)
Q Consensus 248 d~~~A~~~l 256 (273)
|++.+...+
T Consensus 31 d~~~l~~~~ 39 (94)
T cd00088 31 DLNEIFRAA 39 (94)
T ss_pred HHHHHHHHH
Confidence 333333333
No 168
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=28.65 E-value=29 Score=28.49 Aligned_cols=27 Identities=26% Similarity=0.453 Sum_probs=19.5
Q ss_pred CCCCCCCCC--CCCCCcccCCCCCCCCCC
Q 024044 83 ATCWNCNEA--PKAAPFLFCESCRSVQPV 109 (273)
Q Consensus 83 ~~Cw~C~~~--~~~~~~~fC~~C~~iqp~ 109 (273)
+.|+.|+.. -.....+.||-|+.--++
T Consensus 3 p~CP~C~seytY~dg~~~iCpeC~~EW~~ 31 (109)
T TIGR00686 3 PPCPKCNSEYTYHDGTQLICPSCLYEWNE 31 (109)
T ss_pred CcCCcCCCcceEecCCeeECccccccccc
Confidence 689999873 234556889999985544
No 169
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=28.54 E-value=35 Score=33.43 Aligned_cols=27 Identities=26% Similarity=0.684 Sum_probs=17.3
Q ss_pred CCCCCCCCCCCCCCCcccCCCCCCCCCC
Q 024044 82 NATCWNCNEAPKAAPFLFCESCRSVQPV 109 (273)
Q Consensus 82 ~~~Cw~C~~~~~~~~~~fC~~C~~iqp~ 109 (273)
.-+|-+||-... .-.--||+|+.-+-.
T Consensus 354 ~YRC~~CGF~a~-~l~W~CPsC~~W~Ti 380 (389)
T COG2956 354 RYRCQNCGFTAH-TLYWHCPSCRAWETI 380 (389)
T ss_pred CceecccCCcce-eeeeeCCCccccccc
Confidence 478999998421 112359999875433
No 170
>PF11867 DUF3387: Domain of unknown function (DUF3387); InterPro: IPR021810 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is typically between 255 to 340 amino acids in length. This domain is found associated with PF04851 from PFAM, PF04313 from PFAM.
Probab=28.25 E-value=5.2e+02 Score=24.50 Aligned_cols=43 Identities=14% Similarity=0.260 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHhHHHHHHHHHh
Q 024044 229 MQEKLIHWGNSFADAYQN-RNFDEARVCIRRMTYYHRVNEEIAK 271 (273)
Q Consensus 229 ~~~~i~~~~~~l~~af~~-~d~~~A~~~l~kLkYl~ki~~eI~~ 271 (273)
.+.+-......|..+|+- .--..|...-..+.||..|+..|.+
T Consensus 66 ~r~~F~~~~~~l~~~~~l~~p~~~a~~~~~d~~~f~~ir~~i~k 109 (335)
T PF11867_consen 66 RRKRFLKLVKELSKAYALCLPDPEAEEYRDDIAFFQAIRAAIRK 109 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666677777773 2223477788889999999888764
No 171
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=28.07 E-value=2e+02 Score=28.09 Aligned_cols=11 Identities=0% Similarity=0.102 Sum_probs=5.6
Q ss_pred CCHHHHHHHHH
Q 024044 198 SEPELLMEIME 208 (273)
Q Consensus 198 ~d~efLmeiME 208 (273)
.|.+++.+++.
T Consensus 79 fD~~~~n~l~k 89 (412)
T COG5187 79 FDRGRMNTLLK 89 (412)
T ss_pred hhhHHHHHHHH
Confidence 35556555443
No 172
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=27.90 E-value=36 Score=31.60 Aligned_cols=26 Identities=23% Similarity=0.648 Sum_probs=18.3
Q ss_pred CCCCCCCCCCCCCCCCcccCCCCCCCC
Q 024044 81 SNATCWNCNEAPKAAPFLFCESCRSVQ 107 (273)
Q Consensus 81 ~~~~Cw~C~~~~~~~~~~fC~~C~~iq 107 (273)
+.-.|-+||... ..-.+.||+|++.-
T Consensus 353 p~~~c~~cg~~~-~~~~~~c~~c~~~~ 378 (389)
T PRK11788 353 PRYRCRNCGFTA-RTLYWHCPSCKAWE 378 (389)
T ss_pred CCEECCCCCCCC-ccceeECcCCCCcc
Confidence 346799999854 23357899999854
No 173
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=27.89 E-value=48 Score=20.93 Aligned_cols=22 Identities=18% Similarity=0.395 Sum_probs=14.5
Q ss_pred CCCCCCCCC-CCCCcccCCCCCC
Q 024044 84 TCWNCNEAP-KAAPFLFCESCRS 105 (273)
Q Consensus 84 ~Cw~C~~~~-~~~~~~fC~~C~~ 105 (273)
.|..||..- .......||.|++
T Consensus 3 ~C~~CGy~y~~~~~~~~CP~Cg~ 25 (33)
T cd00350 3 VCPVCGYIYDGEEAPWVCPVCGA 25 (33)
T ss_pred ECCCCCCEECCCcCCCcCcCCCC
Confidence 477788742 2234568999986
No 174
>PF13097 CENP-U: CENP-A nucleosome associated complex (NAC) subunit
Probab=27.28 E-value=3.5e+02 Score=24.02 Aligned_cols=42 Identities=14% Similarity=0.257 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Q 024044 200 PELLMEIMEIREAVEDAADSQTLKEIQSQMQEKLIHWGNSFA 241 (273)
Q Consensus 200 ~efLmeiME~rE~leea~d~~~L~~l~~~~~~~i~~~~~~l~ 241 (273)
.+|-.-++|+++.||.-.-..+|+.+-..+++++-+++....
T Consensus 111 ~~FEk~~~eYkq~ieS~~cr~AI~~F~~~~keqL~~~i~evq 152 (175)
T PF13097_consen 111 SAFEKTALEYKQSIESKICRKAINKFYSNFKEQLIEMIKEVQ 152 (175)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777888999888755567777777777777666666553
No 175
>PF13838 Clathrin_H_link: Clathrin-H-link; PDB: 2XZG_A 3GD1_I 1BPO_C 1C9I_B 1C9L_A.
Probab=27.27 E-value=1e+02 Score=23.00 Aligned_cols=25 Identities=12% Similarity=0.272 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHH
Q 024044 234 IHWGNSFADAYQNRNFDEARVCIRR 258 (273)
Q Consensus 234 ~~~~~~l~~af~~~d~~~A~~~l~k 258 (273)
+....++.+.|..|+|++|.+....
T Consensus 7 ~l~~~~F~~l~~~g~y~eAA~~AA~ 31 (66)
T PF13838_consen 7 DLYVQQFNELFSQGQYEEAAKVAAN 31 (66)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 4467789999999999999876653
No 176
>PRK08241 RNA polymerase factor sigma-70; Validated
Probab=27.20 E-value=1.6e+02 Score=27.44 Aligned_cols=93 Identities=10% Similarity=0.082 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhcCcchhHHHHHHhhCCcCCC---CCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Q 024044 163 SGRVIEAYRTLTNPLARAIYILRLEGVEVNE---DETVSEPELLMEIMEIREAVEDAADSQTLKEIQSQMQEKLIHWGNS 239 (273)
Q Consensus 163 s~~IN~AY~tL~dP~~Ra~YlL~L~G~~~~e---e~~~~d~efLmeiME~rE~leea~d~~~L~~l~~~~~~~i~~~~~~ 239 (273)
...+.++...|....+....|..+.|....| .-.......-..+--.++.|-+.... +.........++..+....
T Consensus 144 ~~~l~~~l~~Lp~~~R~v~~L~~~~g~s~~EIA~~lgis~~tVk~~l~RAr~~Lr~~~~~-~~~~~~~~~~~~~~~~v~~ 222 (339)
T PRK08241 144 RLAFVAALQHLPPRQRAVLILRDVLGWSAAEVAELLDTSVAAVNSALQRARATLAERGPS-AADTLREPDDPEERALLAR 222 (339)
T ss_pred HHHHHHHHHhCCHHHhhhhhhHHhhCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhhcCCC-cccccCCCCChHHHHHHHH
Confidence 3458899999986555544444577776432 11111122222222233333332110 0000000122455666777
Q ss_pred HHHHHhccCHHHHHHHH
Q 024044 240 FADAYQNRNFDEARVCI 256 (273)
Q Consensus 240 l~~af~~~d~~~A~~~l 256 (273)
+-++|+.||++.+.+++
T Consensus 223 ~~~A~~~gD~~~l~~ll 239 (339)
T PRK08241 223 YVAAFEAYDVDALVALL 239 (339)
T ss_pred HHHHHhcCCHHHHHHHh
Confidence 78889999999887765
No 177
>PF06677 Auto_anti-p27: Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27); InterPro: IPR009563 The proteins in this entry are functionally uncharacterised and include several proteins that characterise Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27). It is thought that the potential association of anti-p27 with anti-centromere antibodies suggests that autoantigen p27 might play a role in mitosis [].
Probab=27.20 E-value=33 Score=23.25 Aligned_cols=23 Identities=22% Similarity=0.632 Sum_probs=15.6
Q ss_pred CCCCCCCCCCCC--CCCcccCCCCC
Q 024044 82 NATCWNCNEAPK--AAPFLFCESCR 104 (273)
Q Consensus 82 ~~~Cw~C~~~~~--~~~~~fC~~C~ 104 (273)
...|+.|+.+.. .....+|+.|+
T Consensus 17 ~~~Cp~C~~PL~~~k~g~~~Cv~C~ 41 (41)
T PF06677_consen 17 DEHCPDCGTPLMRDKDGKIYCVSCG 41 (41)
T ss_pred cCccCCCCCeeEEecCCCEECCCCC
Confidence 367899987533 23457899885
No 178
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=27.13 E-value=51 Score=21.06 Aligned_cols=22 Identities=23% Similarity=0.715 Sum_probs=12.0
Q ss_pred CCCCCCCCCC------CCCcccCCCCCC
Q 024044 84 TCWNCNEAPK------AAPFLFCESCRS 105 (273)
Q Consensus 84 ~Cw~C~~~~~------~~~~~fC~~C~~ 105 (273)
.|+.||.... ......||.||+
T Consensus 7 ~C~~Cg~~fe~~~~~~~~~~~~CP~Cg~ 34 (41)
T smart00834 7 RCEDCGHTFEVLQKISDDPLATCPECGG 34 (41)
T ss_pred EcCCCCCEEEEEEecCCCCCCCCCCCCC
Confidence 5677776211 122345777776
No 179
>PF12172 DUF35_N: Rubredoxin-like zinc ribbon domain (DUF35_N); InterPro: IPR022002 This domain has no known function and is found in conserved hypothetical archaeal and bacterial proteins. The domain is duplicated in O53566 from SWISSPROT. The structure of a DUF35 representative reveals two long N-terminal helices followed by a rubredoxin-like zinc ribbon domain represented in this family and a C-terminal OB fold domain. Zinc is chelated by the four conserved cysteines in the alignment. ; PDB: 3IRB_A.
Probab=27.04 E-value=16 Score=23.45 Aligned_cols=22 Identities=27% Similarity=0.706 Sum_probs=11.2
Q ss_pred CCCCCCCCCCCCCCcccCCCCCC
Q 024044 83 ATCWNCNEAPKAAPFLFCESCRS 105 (273)
Q Consensus 83 ~~Cw~C~~~~~~~~~~fC~~C~~ 105 (273)
..|-+|+.... .+..+|+.|++
T Consensus 12 ~rC~~Cg~~~~-pPr~~Cp~C~s 33 (37)
T PF12172_consen 12 QRCRDCGRVQF-PPRPVCPHCGS 33 (37)
T ss_dssp EE-TTT--EEE-S--SEETTTT-
T ss_pred EEcCCCCCEec-CCCcCCCCcCc
Confidence 57888988432 24578999975
No 180
>PHA02942 putative transposase; Provisional
Probab=26.64 E-value=49 Score=32.42 Aligned_cols=26 Identities=23% Similarity=0.589 Sum_probs=17.7
Q ss_pred CCCCCCCCCCCC--CCCcccCCCCCCCC
Q 024044 82 NATCWNCNEAPK--AAPFLFCESCRSVQ 107 (273)
Q Consensus 82 ~~~Cw~C~~~~~--~~~~~fC~~C~~iq 107 (273)
+..|+.||.... ....+.|+.||..-
T Consensus 325 Sq~Cs~CG~~~~~l~~r~f~C~~CG~~~ 352 (383)
T PHA02942 325 SVSCPKCGHKMVEIAHRYFHCPSCGYEN 352 (383)
T ss_pred CccCCCCCCccCcCCCCEEECCCCCCEe
Confidence 367999997422 12457899999854
No 181
>PRK14873 primosome assembly protein PriA; Provisional
Probab=26.34 E-value=47 Score=35.01 Aligned_cols=13 Identities=15% Similarity=0.003 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHH
Q 024044 201 ELLMEIMEIREAV 213 (273)
Q Consensus 201 efLmeiME~rE~l 213 (273)
.|..+.|+.|+++
T Consensus 553 ~F~~~EL~~R~~~ 565 (665)
T PRK14873 553 GHAERELAERAEV 565 (665)
T ss_pred HHHHHHHHHHHHc
Confidence 5777777777764
No 182
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=26.19 E-value=55 Score=33.13 Aligned_cols=29 Identities=24% Similarity=0.470 Sum_probs=18.6
Q ss_pred CCCCCCCCCCCC---CCCcccCCCCCCCCCCC
Q 024044 82 NATCWNCNEAPK---AAPFLFCESCRSVQPVD 110 (273)
Q Consensus 82 ~~~Cw~C~~~~~---~~~~~fC~~C~~iqp~~ 110 (273)
...|++|+.... ....+.|+.||..+|++
T Consensus 222 ~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~ 253 (505)
T TIGR00595 222 ILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIP 253 (505)
T ss_pred ccCCCCCCCceEEecCCCeEEcCCCcCcCCCC
Confidence 367888876321 34557788888877643
No 183
>PRK04023 DNA polymerase II large subunit; Validated
Probab=26.04 E-value=73 Score=35.43 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=18.1
Q ss_pred CCCCCCCCCCCCCCcccCCCCCCCCCCC
Q 024044 83 ATCWNCNEAPKAAPFLFCESCRSVQPVD 110 (273)
Q Consensus 83 ~~Cw~C~~~~~~~~~~fC~~C~~iqp~~ 110 (273)
..|+.|+... ....||.|+.--++.
T Consensus 652 ~fCP~CG~~~---~~y~CPKCG~El~~~ 676 (1121)
T PRK04023 652 YRCPRCGIEV---EEDECEKCGREPTPY 676 (1121)
T ss_pred eeCccccCcC---CCCcCCCCCCCCCcc
Confidence 6899998843 335699999866553
No 184
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=25.95 E-value=4.2e+02 Score=22.65 Aligned_cols=25 Identities=24% Similarity=0.247 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHH
Q 024044 234 IHWGNSFADAYQNRNFDEARVCIRR 258 (273)
Q Consensus 234 ~~~~~~l~~af~~~d~~~A~~~l~k 258 (273)
.+-...|.++++.+||++|.++=+.
T Consensus 91 ~~~L~~L~~aL~~~d~~~A~~Ih~~ 115 (157)
T PF07304_consen 91 VDKLHQLAQALQARDYDAADEIHVD 115 (157)
T ss_dssp HHHHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444556677777777777654433
No 185
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=25.83 E-value=1.5e+02 Score=17.30 Aligned_cols=25 Identities=12% Similarity=0.012 Sum_probs=19.3
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHh
Q 024044 237 GNSFADAYQNRNFDEARVCIRRMTY 261 (273)
Q Consensus 237 ~~~l~~af~~~d~~~A~~~l~kLkY 261 (273)
..-|......|+++.|..++..|+-
T Consensus 5 ~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 5 NALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3445666778999999999988874
No 186
>PF09779 Ima1_N: Ima1 N-terminal domain; InterPro: IPR018617 Members of this family of uncharacterised novel proteins have no known function.
Probab=25.51 E-value=63 Score=26.86 Aligned_cols=31 Identities=23% Similarity=0.598 Sum_probs=19.5
Q ss_pred CCCCCCCCC-C---CCCc-ccCCCCCCCCCCCCCCC
Q 024044 84 TCWNCNEAP-K---AAPF-LFCESCRSVQPVDHSVD 114 (273)
Q Consensus 84 ~Cw~C~~~~-~---~~~~-~fC~~C~~iqp~~~~~n 114 (273)
.||-||... . .... +.|+.|...--.+...|
T Consensus 2 ~C~fC~~~s~~~~~~~~~~w~C~~C~q~N~f~e~Gd 37 (131)
T PF09779_consen 2 NCWFCGQNSKVPYDNRNSNWTCPHCEQYNGFDEDGD 37 (131)
T ss_pred eeccCCCCCCCCCCCCCCeeECCCCCCccCccccCC
Confidence 699999831 1 2233 89999997544444333
No 187
>PRK11032 hypothetical protein; Provisional
Probab=25.38 E-value=47 Score=28.95 Aligned_cols=35 Identities=17% Similarity=0.393 Sum_probs=21.9
Q ss_pred ccccccccCCCCCCCCCCCCC---CCCCcccCCCCCCC
Q 024044 72 FCSESAEKASNATCWNCNEAP---KAAPFLFCESCRSV 106 (273)
Q Consensus 72 ~~~~~~~~~~~~~Cw~C~~~~---~~~~~~fC~~C~~i 106 (273)
|++--....+.-.|-+||... .+..-.-||.|+..
T Consensus 114 Y~sGEvvg~G~LvC~~Cg~~~~~~~p~~i~pCp~C~~~ 151 (160)
T PRK11032 114 YHSGEVVGLGNLVCEKCHHHLAFYTPEVLPLCPKCGHD 151 (160)
T ss_pred eecceeeecceEEecCCCCEEEecCCCcCCCCCCCCCC
Confidence 444333334557899999832 23444679999974
No 188
>PRK00762 hypA hydrogenase nickel incorporation protein; Provisional
Probab=25.38 E-value=45 Score=27.51 Aligned_cols=24 Identities=17% Similarity=0.524 Sum_probs=14.7
Q ss_pred CCCCCCCCCCCCC--------CcccCCCCCCCC
Q 024044 83 ATCWNCNEAPKAA--------PFLFCESCRSVQ 107 (273)
Q Consensus 83 ~~Cw~C~~~~~~~--------~~~fC~~C~~iq 107 (273)
..| +|+...... +.+.||.|+...
T Consensus 71 ~~C-~Cg~~~~~~~~~~~~~~~~~~CP~Cgs~~ 102 (124)
T PRK00762 71 IEC-ECGYEGVVDEDEIDHYAAVIECPVCGNKR 102 (124)
T ss_pred EEe-eCcCcccccccchhccccCCcCcCCCCCC
Confidence 679 998752111 124599999644
No 189
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=24.96 E-value=2e+02 Score=29.43 Aligned_cols=23 Identities=26% Similarity=0.245 Sum_probs=17.9
Q ss_pred HHHHHHHhcCcchhHHHHHHhhC
Q 024044 166 VIEAYRTLTNPLARAIYILRLEG 188 (273)
Q Consensus 166 IN~AY~tL~dP~~Ra~YlL~L~G 188 (273)
-.+|+..|-||..|..++-+|.-
T Consensus 340 g~~a~tlLe~~~~R~~fldeL~E 362 (507)
T PF05600_consen 340 GDDALTLLENPETRNQFLDELLE 362 (507)
T ss_pred CchhhhhcCCHhHHHHHHHHHHH
Confidence 45788888889999998766643
No 190
>PRK10220 hypothetical protein; Provisional
Probab=24.75 E-value=44 Score=27.54 Aligned_cols=28 Identities=18% Similarity=0.412 Sum_probs=19.8
Q ss_pred CCCCCCCCC--CCCCCcccCCCCCCCCCCC
Q 024044 83 ATCWNCNEA--PKAAPFLFCESCRSVQPVD 110 (273)
Q Consensus 83 ~~Cw~C~~~--~~~~~~~fC~~C~~iqp~~ 110 (273)
+.|+.|+.. -.....+.||.|+.--++.
T Consensus 4 P~CP~C~seytY~d~~~~vCpeC~hEW~~~ 33 (111)
T PRK10220 4 PHCPKCNSEYTYEDNGMYICPECAHEWNDA 33 (111)
T ss_pred CcCCCCCCcceEcCCCeEECCcccCcCCcc
Confidence 689999873 3345668899999855443
No 191
>PRK12496 hypothetical protein; Provisional
Probab=24.75 E-value=54 Score=28.31 Aligned_cols=23 Identities=30% Similarity=0.608 Sum_probs=16.1
Q ss_pred CCCCCCCCCC-CCCCcccCCCCCC
Q 024044 83 ATCWNCNEAP-KAAPFLFCESCRS 105 (273)
Q Consensus 83 ~~Cw~C~~~~-~~~~~~fC~~C~~ 105 (273)
..|..|+..- .....-+||-||+
T Consensus 128 ~~C~gC~~~~~~~~~~~~C~~CG~ 151 (164)
T PRK12496 128 KVCKGCKKKYPEDYPDDVCEICGS 151 (164)
T ss_pred EECCCCCccccCCCCCCcCCCCCC
Confidence 4699999843 2234468999997
No 192
>PF11278 DUF3079: Protein of unknown function (DUF3079); InterPro: IPR021430 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=24.58 E-value=64 Score=22.96 Aligned_cols=27 Identities=26% Similarity=0.607 Sum_probs=16.5
Q ss_pred CCCCCCCCCCCCCCCCCcccCCC-CCCCC
Q 024044 80 ASNATCWNCNEAPKAAPFLFCES-CRSVQ 107 (273)
Q Consensus 80 ~~~~~Cw~C~~~~~~~~~~fC~~-C~~iq 107 (273)
++.+.||.|.+-- +...+-|.+ +..+|
T Consensus 11 hPERiCWGCD~YC-~a~~l~CGNGs~Rtq 38 (52)
T PF11278_consen 11 HPERICWGCDRYC-PADSLACGNGSSRTQ 38 (52)
T ss_pred Cccceeecccccc-ChhhhcccCCccccc
Confidence 4568999998831 344566764 33344
No 193
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=24.44 E-value=2.8e+02 Score=29.73 Aligned_cols=29 Identities=7% Similarity=0.141 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 024044 232 KLIHWGNSFADAYQNRNFDEARVCIRRMT 260 (273)
Q Consensus 232 ~i~~~~~~l~~af~~~d~~~A~~~l~kLk 260 (273)
....+..++.+.|..+|++.+.+.+..|+
T Consensus 129 ~w~~l~~~v~~~~~~~d~~~~a~~l~~m~ 157 (766)
T PF10191_consen 129 NWSTLSAEVDDLFESGDIAKIADRLAEMQ 157 (766)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 44556677888999999999988888876
No 194
>COG2198 ArcB FOG: HPt domain [Signal transduction mechanisms]
Probab=24.08 E-value=3.1e+02 Score=21.65 Aligned_cols=61 Identities=20% Similarity=0.264 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHhc---CCHHHHHHHHHHHHH--------HHHHHHHHHHHHHhc-cCHHHHHHHHHHHHhH
Q 024044 202 LLMEIMEIREAVEDA---ADSQTLKEIQSQMQE--------KLIHWGNSFADAYQN-RNFDEARVCIRRMTYY 262 (273)
Q Consensus 202 fLmeiME~rE~leea---~d~~~L~~l~~~~~~--------~i~~~~~~l~~af~~-~d~~~A~~~l~kLkYl 262 (273)
|+.++-+..++++.+ ++...+.+....++. ++...-..|+.++.. +.++..-..+.+|+=.
T Consensus 32 f~~~~~~~l~~l~~~l~~~d~~~~~~~aH~lkg~a~~lg~~~L~~~~~~lE~~~~~~~~~~~~~~~i~~l~~~ 104 (122)
T COG2198 32 FLEEAPAQLEQLESALAAEDNDGLARLAHRLKGSAASLGLPALAQLCQQLEDALRSGASLEELEELIAELKDE 104 (122)
T ss_pred HHHHhHHHHHHHHHHHhcCCcHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 333333344444432 344455555555543 566777777777776 4567777777666543
No 195
>PRK00226 greA transcription elongation factor GreA; Reviewed
Probab=23.95 E-value=4.4e+02 Score=22.17 Aligned_cols=48 Identities=10% Similarity=0.157 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHhccC------HHHHHHHHH----HHHhHHHHHH
Q 024044 220 QTLKEIQSQMQEKLI----HWGNSFADAYQNRN------FDEARVCIR----RMTYYHRVNE 267 (273)
Q Consensus 220 ~~L~~l~~~~~~~i~----~~~~~l~~af~~~d------~~~A~~~l~----kLkYl~ki~~ 267 (273)
+.+++|+++++.... +....+..|-..|| |+.|+.... |++++...++
T Consensus 10 ~g~~~L~~eL~~l~~~~r~~~~~~~~~A~~~gdl~En~~y~~a~~~~~~~~~ri~~l~~~L~ 71 (157)
T PRK00226 10 EGYEKLEEELEELKTVERPEIIEAIAEAREHGDLSENAEYHAAKEEQGFIEGRIRELEDKLS 71 (157)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHcCCccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555544444 55556666655555 666655444 4555555544
No 196
>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes. LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].
Probab=23.94 E-value=3.9e+02 Score=24.70 Aligned_cols=44 Identities=18% Similarity=0.234 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhHHHHHHHHHh
Q 024044 228 QMQEKLIHWGNSFADAYQNRNFDEARVCIRRMTYYHRVNEEIAK 271 (273)
Q Consensus 228 ~~~~~i~~~~~~l~~af~~~d~~~A~~~l~kLkYl~ki~~eI~~ 271 (273)
++.++|....++.+++=+.|+.++|..++.+..-+..-.+++.+
T Consensus 127 ~l~~~I~~ll~~aE~LGeeG~VdeA~~~~~~~e~Lk~ek~~le~ 170 (254)
T PF03194_consen 127 ELDEKIGELLKEAEELGEEGDVDEAQKLMEEVEKLKEEKEELEK 170 (254)
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455666666666666788888888887777766666666544
No 197
>PRK03988 translation initiation factor IF-2 subunit beta; Validated
Probab=23.80 E-value=51 Score=27.94 Aligned_cols=28 Identities=29% Similarity=0.602 Sum_probs=20.6
Q ss_pred CCCCCCCCCCC------CCCcccCCCCCCCCCCC
Q 024044 83 ATCWNCNEAPK------AAPFLFCESCRSVQPVD 110 (273)
Q Consensus 83 ~~Cw~C~~~~~------~~~~~fC~~C~~iqp~~ 110 (273)
..|+.|+.+-. ..-.+-|..||+..|+.
T Consensus 103 VlC~~C~spdT~l~k~~r~~~l~C~ACGa~~~V~ 136 (138)
T PRK03988 103 VICPECGSPDTKLIKEGRIWVLKCEACGAETPVK 136 (138)
T ss_pred EECCCCCCCCcEEEEcCCeEEEEcccCCCCCcCC
Confidence 68999999532 12245799999998884
No 198
>PRK00432 30S ribosomal protein S27ae; Validated
Probab=23.75 E-value=49 Score=23.20 Aligned_cols=23 Identities=17% Similarity=0.410 Sum_probs=14.7
Q ss_pred CCCCCCCC-C-CCCCCcccCCCCCC
Q 024044 83 ATCWNCNE-A-PKAAPFLFCESCRS 105 (273)
Q Consensus 83 ~~Cw~C~~-~-~~~~~~~fC~~C~~ 105 (273)
..|+.|+. . ......+.|+.|+.
T Consensus 21 ~fCP~Cg~~~m~~~~~r~~C~~Cgy 45 (50)
T PRK00432 21 KFCPRCGSGFMAEHLDRWHCGKCGY 45 (50)
T ss_pred CcCcCCCcchheccCCcEECCCcCC
Confidence 57888877 2 11234577888885
No 199
>PF08447 PAS_3: PAS fold; InterPro: IPR013655 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. The PAS domain contains a sensory box, or S-box domain that occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include haem in the oxygen sensor FixL [], FAD in the redox potential sensor NifL [], and a 4-hydroxycinnamyl chromophore in photoactive yellow protein []. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. This domain has been found in the gene product of the madA gene of the filamentous zygomycete fungus Phycomyces blakesleeanus. It has been shown that MadA encodes a blue-light photoreceptor for phototropism and other light responses. The gene is involved in the phototropic responses associated with sporangiophore growth; they exhibit phototropism by bending toward near-UV and blue wavelengths and away from far-UV wavelengths in a manner that is physiologically similar to plant phototropic responses [].; GO: 0005515 protein binding; PDB: 3NJA_D 3H9W_A 3GDI_B 3ICY_A 3EEH_A 3MR0_B.
Probab=23.74 E-value=17 Score=26.29 Aligned_cols=30 Identities=37% Similarity=0.936 Sum_probs=19.9
Q ss_pred CCCcccccCcccCCCCCHHHH-HHHHHHHHHhhCCCC
Q 024044 112 SVDYFQIFGLGKKYEIGNEKL-EGKYKDWQKRIHPDL 147 (273)
Q Consensus 112 ~~nyFellgl~~~f~Id~~~L-k~~Yr~Lqk~~HPDk 147 (273)
+.+++++||+++ +++ ......+...+|||=
T Consensus 5 s~~~~~i~G~~~------~~~~~~~~~~~~~~ihpdD 35 (91)
T PF08447_consen 5 SDNFYEIFGYSP------EEIGKPDFEEWLERIHPDD 35 (91)
T ss_dssp -THHHHHHTS-H------HHHTCBEHHHHHHHB-TTT
T ss_pred eHHHHHHhCCCH------HHhccCCHHHHHhhcCHHH
Confidence 457889999887 334 445666888999986
No 200
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=23.64 E-value=18 Score=29.22 Aligned_cols=24 Identities=25% Similarity=0.505 Sum_probs=14.5
Q ss_pred CCCCCCCCCCC-CCCcccCCCCCCC
Q 024044 83 ATCWNCNEAPK-AAPFLFCESCRSV 106 (273)
Q Consensus 83 ~~Cw~C~~~~~-~~~~~fC~~C~~i 106 (273)
..|..|+.... ....+.||.|+..
T Consensus 71 ~~C~~Cg~~~~~~~~~~~CP~Cgs~ 95 (113)
T PF01155_consen 71 ARCRDCGHEFEPDEFDFSCPRCGSP 95 (113)
T ss_dssp EEETTTS-EEECHHCCHH-SSSSSS
T ss_pred EECCCCCCEEecCCCCCCCcCCcCC
Confidence 67999999432 2223569999974
No 201
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=23.56 E-value=20 Score=34.12 Aligned_cols=50 Identities=24% Similarity=0.426 Sum_probs=27.2
Q ss_pred CcCCCCccccccccccccccccccccccccccCCCCCCCCCCCCCCCCCcccCCCCCCCC
Q 024044 48 RIQNPSLYCGLCYYFEILKFSGRSFCSESAEKASNATCWNCNEAPKAAPFLFCESCRSVQ 107 (273)
Q Consensus 48 ~~~~~s~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~Cw~C~~~~~~~~~~fC~~C~~iq 107 (273)
.++.+.+.|.-|. .++- ..+...++...||+|-..+... ..-||-|..--
T Consensus 234 ~i~~a~~kC~LCL-e~~~--------~pSaTpCGHiFCWsCI~~w~~e-k~eCPlCR~~~ 283 (293)
T KOG0317|consen 234 SIPEATRKCSLCL-ENRS--------NPSATPCGHIFCWSCILEWCSE-KAECPLCREKF 283 (293)
T ss_pred cCCCCCCceEEEe-cCCC--------CCCcCcCcchHHHHHHHHHHcc-ccCCCcccccC
Confidence 3445566777742 2211 1122335578999996644221 22399999733
No 202
>PRK13130 H/ACA RNA-protein complex component Nop10p; Reviewed
Probab=23.50 E-value=86 Score=22.69 Aligned_cols=22 Identities=18% Similarity=0.406 Sum_probs=15.7
Q ss_pred CCCCCCCCCCCCCCcccCCCCCCCC
Q 024044 83 ATCWNCNEAPKAAPFLFCESCRSVQ 107 (273)
Q Consensus 83 ~~Cw~C~~~~~~~~~~fC~~C~~iq 107 (273)
..|.+|+.... .-.||.||..-
T Consensus 6 r~C~~CgvYTL---k~~CP~CG~~t 27 (56)
T PRK13130 6 RKCPKCGVYTL---KEICPVCGGKT 27 (56)
T ss_pred eECCCCCCEEc---cccCcCCCCCC
Confidence 67999998422 45799999743
No 203
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=23.26 E-value=2.4e+02 Score=29.90 Aligned_cols=60 Identities=7% Similarity=0.153 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 024044 200 PELLMEIMEIREAVEDAADSQTLKEIQSQMQEKLIHWGNSFADAYQNRNFDEARVCIRRMT 260 (273)
Q Consensus 200 ~efLmeiME~rE~leea~d~~~L~~l~~~~~~~i~~~~~~l~~af~~~d~~~A~~~l~kLk 260 (273)
+++|.+.-.+...+.. ...+.+.++.....+...+..+.|..+...+|++.++..+.+|+
T Consensus 860 ~~~ll~~~~~~~~~~~-~~~~~~~~~~~~f~~~~~~~~~~l~~~~~~~d~~~~~~~~H~lk 919 (968)
T TIGR02956 860 SEFLLDEEQLQQDIEV-LGVEKVRQLVALFKTSSAEQLEELSAARAVDDDAQIKKLAHKLK 919 (968)
T ss_pred chhhcCHHHHHHHHHh-cCcHHHHHHHHHHHHhhHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4445544444444432 24456777888888888888899999999999999988888876
No 204
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=22.86 E-value=65 Score=20.63 Aligned_cols=21 Identities=24% Similarity=0.621 Sum_probs=10.9
Q ss_pred CCCCCCCC--CCCCcccCCCCCC
Q 024044 85 CWNCNEAP--KAAPFLFCESCRS 105 (273)
Q Consensus 85 Cw~C~~~~--~~~~~~fC~~C~~ 105 (273)
|..|+... ......-|+.||.
T Consensus 3 C~~Cg~~~~~~~~~~irC~~CG~ 25 (32)
T PF03604_consen 3 CGECGAEVELKPGDPIRCPECGH 25 (32)
T ss_dssp ESSSSSSE-BSTSSTSSBSSSS-
T ss_pred CCcCCCeeEcCCCCcEECCcCCC
Confidence 55666632 2233456777764
No 205
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=22.62 E-value=7e+02 Score=24.06 Aligned_cols=28 Identities=14% Similarity=0.260 Sum_probs=16.0
Q ss_pred CCCCCCCCCCCCCCCCcccCCCCCCCCC
Q 024044 81 SNATCWNCNEAPKAAPFLFCESCRSVQP 108 (273)
Q Consensus 81 ~~~~Cw~C~~~~~~~~~~fC~~C~~iqp 108 (273)
++.-|-+|-......+...||.|+....
T Consensus 27 GH~~C~sCv~~l~~~~~~~CP~C~~~lr 54 (309)
T TIGR00570 27 GHTLCESCVDLLFVRGSGSCPECDTPLR 54 (309)
T ss_pred CCcccHHHHHHHhcCCCCCCCCCCCccc
Confidence 3566666755322233457999987443
No 206
>PRK14102 nifW nitrogenase stabilizing/protective protein; Provisional
Probab=22.55 E-value=1.5e+02 Score=24.18 Aligned_cols=61 Identities=21% Similarity=0.321 Sum_probs=39.3
Q ss_pred CCCCcccccCcccC---CCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhc
Q 024044 111 HSVDYFQIFGLGKK---YEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLT 174 (273)
Q Consensus 111 ~~~nyFellgl~~~---f~Id~~~Lk~~Yr~Lqk~~HPDk~~~~~~~E~~~a~~~s~~IN~AY~tL~ 174 (273)
...+||+.||++-. .++.-=-|-++|.+.....+.+. .+.++.| .-...-..+.+||+...
T Consensus 13 sAEdFf~ff~v~YDp~vvnV~RLHILkrf~qyl~~~~~~~-~~~~e~~--~~~~yr~~L~~AY~dF~ 76 (105)
T PRK14102 13 DAEDYFQFFELPYDPTVVNVNRLHILKQFSQLIAEIDANF-PDLSEEE--KLEKYQLALEEAYQVFL 76 (105)
T ss_pred cHHHHHHHhCCCCCcchhhHHHHHHHHHHHHHHHHhcccc-CCCCHHH--HHHHHHHHHHHHHHHHc
Confidence 35689999999742 23344456678888777766554 3344444 34456677889998754
No 207
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=22.36 E-value=1.4e+02 Score=17.12 Aligned_cols=21 Identities=14% Similarity=0.159 Sum_probs=16.5
Q ss_pred HHHHHhccCHHHHHHHHHHHH
Q 024044 240 FADAYQNRNFDEARVCIRRMT 260 (273)
Q Consensus 240 l~~af~~~d~~~A~~~l~kLk 260 (273)
|......+++++|.+.+.+|+
T Consensus 7 i~~~~~~~~~~~a~~~~~~M~ 27 (35)
T TIGR00756 7 IDGLCKAGRVEEALELFKEML 27 (35)
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 445566789999999988886
No 208
>PF12644 DUF3782: Protein of unknown function (DUF3782); InterPro: IPR024271 This functionally uncharacterised family of proteins is found in bacteria and archaea. Proteins in this family are typically between 91 and 186 amino acids in length.
Probab=22.34 E-value=2.9e+02 Score=19.47 Aligned_cols=41 Identities=22% Similarity=0.434 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024044 205 EIMEIREAVEDA---ADSQTLKEIQSQMQEKLIHWGNSFADAYQ 245 (273)
Q Consensus 205 eiME~rE~leea---~d~~~L~~l~~~~~~~i~~~~~~l~~af~ 245 (273)
++|.+.|++++. -+.+++..|..-+..--..+.-.-..+|.
T Consensus 9 ~i~a~~e~l~~~~~~lt~e~~~~l~~~~~al~~~~~~~~e~afr 52 (64)
T PF12644_consen 9 EIMATKEELEELEERLTKEDKKRLEEYIDALGARWGLESEEAFR 52 (64)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 677777777776 45555555544443333333333333443
No 209
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=22.33 E-value=37 Score=28.59 Aligned_cols=25 Identities=20% Similarity=0.404 Sum_probs=16.4
Q ss_pred CCCCCCCCCCC---------CCCcccCCCCCCCC
Q 024044 83 ATCWNCNEAPK---------AAPFLFCESCRSVQ 107 (273)
Q Consensus 83 ~~Cw~C~~~~~---------~~~~~fC~~C~~iq 107 (273)
-.|++|+.... ....|.||.||..-
T Consensus 100 Y~Cp~C~~~y~~~ea~~~~d~~~~f~Cp~Cg~~l 133 (147)
T smart00531 100 YKCPNCQSKYTFLEANQLLDMDGTFTCPRCGEEL 133 (147)
T ss_pred EECcCCCCEeeHHHHHHhcCCCCcEECCCCCCEE
Confidence 57999987321 12238899999843
No 210
>PF08312 cwf21: cwf21 domain; InterPro: IPR013170 The cwf21 domain is found in proteins involved in mRNA splicing. Proteins containing this domain have been isolated as a subcomplex of the splicosome in Schizosaccharomyces pombe (Fission yeast) []. In yeast, this domain binds the protein Prp8p [], a large and highly conserved U5 snRNP protein which has been proposed as a protein cofactor at the spliceosomal catalytic centre []. The cwf21 domain is found in, amongst others, the small Cwc21p protein in yeast as well as in the much larger human ortholog SRm300 (serine/arginine repetitive matrix protein). ; PDB: 2E62_A.
Probab=22.18 E-value=2.5e+02 Score=19.41 Aligned_cols=14 Identities=21% Similarity=0.665 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHhcC
Q 024044 204 MEIMEIREAVEDAA 217 (273)
Q Consensus 204 meiME~rE~leea~ 217 (273)
..+|++++.|++-+
T Consensus 11 lk~~elrd~LEe~g 24 (46)
T PF08312_consen 11 LKCLELRDELEEQG 24 (46)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCC
Confidence 36799999999854
No 211
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=22.07 E-value=1.4e+02 Score=20.12 Aligned_cols=22 Identities=14% Similarity=0.253 Sum_probs=14.5
Q ss_pred HHHHHHHhccCHHHHHHHHHHH
Q 024044 238 NSFADAYQNRNFDEARVCIRRM 259 (273)
Q Consensus 238 ~~l~~af~~~d~~~A~~~l~kL 259 (273)
..|.+++..|||+.|.+.+..+
T Consensus 6 ~~i~~~i~~g~~~~a~~~~~~~ 27 (58)
T smart00668 6 KRIRELILKGDWDEALEWLSSL 27 (58)
T ss_pred HHHHHHHHcCCHHHHHHHHHHc
Confidence 4456667777887777766443
No 212
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=21.95 E-value=55 Score=21.28 Aligned_cols=23 Identities=30% Similarity=0.585 Sum_probs=12.5
Q ss_pred CCCCCCCCC--------CCCCcccCCCCCCC
Q 024044 84 TCWNCNEAP--------KAAPFLFCESCRSV 106 (273)
Q Consensus 84 ~Cw~C~~~~--------~~~~~~fC~~C~~i 106 (273)
.|++|+..- ......-|+.|+.+
T Consensus 4 ~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~ 34 (37)
T PF13719_consen 4 TCPNCQTRFRVPDDKLPAGGRKVRCPKCGHV 34 (37)
T ss_pred ECCCCCceEEcCHHHcccCCcEEECCCCCcE
Confidence 577776621 11224567777764
No 213
>PF13779 DUF4175: Domain of unknown function (DUF4175)
Probab=21.92 E-value=3.5e+02 Score=29.54 Aligned_cols=52 Identities=19% Similarity=0.420 Sum_probs=0.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH-----------------------------------HHHHHhccCHHHHH
Q 024044 209 IREAVEDAADSQTLKEIQSQMQEKLIHWGNS-----------------------------------FADAYQNRNFDEAR 253 (273)
Q Consensus 209 ~rE~leea~d~~~L~~l~~~~~~~i~~~~~~-----------------------------------l~~af~~~d~~~A~ 253 (273)
++|.|+.--+.++|+++-+++++.+++.... |.++.+.|+.++|.
T Consensus 481 L~eAL~~gAs~eEI~rLm~eLR~A~~~ym~~LAeq~~~~~~~~~~p~~~~~~~~~~~~dL~~mmd~ie~la~~G~~~~A~ 560 (820)
T PF13779_consen 481 LREALERGASDEEIARLMQELREAMQDYMQALAEQAQRNPQQQDQPPDQGNSQMMSQQDLQRMMDRIEELARSGRMDEAR 560 (820)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHhCcccccCcccchhhhccCHHHHHHHHHHHHHHHHcCCHHHHH
Q ss_pred HHHHHHH
Q 024044 254 VCIRRMT 260 (273)
Q Consensus 254 ~~l~kLk 260 (273)
..|..|.
T Consensus 561 q~L~qlq 567 (820)
T PF13779_consen 561 QLLEQLQ 567 (820)
T ss_pred HHHHHHH
No 214
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=21.74 E-value=3e+02 Score=23.70 Aligned_cols=46 Identities=17% Similarity=0.289 Sum_probs=27.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH----HHHHhHHHHHH
Q 024044 218 DSQTLKEIQSQMQEKLIHWGNSFADAYQNRNFDEARVCI----RRMTYYHRVNE 267 (273)
Q Consensus 218 d~~~L~~l~~~~~~~i~~~~~~l~~af~~~d~~~A~~~l----~kLkYl~ki~~ 267 (273)
+.+.+++|+.+++. +...+.+|=..||+.+|++.. .|++||.+.+.
T Consensus 32 T~~G~~~L~~El~~----L~~~i~~Ar~~GDlsEak~~~~~~e~rI~~L~~~L~ 81 (160)
T PRK06342 32 TEAGLKALEDQLAQ----ARAAYEAAQAIEDVNERRRQMARPLRDLRYLAARRR 81 (160)
T ss_pred CHHHHHHHHHHHHH----HHHHHHHHHHCCChhHHHHHHHHHHHHHHHHHHHHc
Confidence 34555555554443 335677777888887766433 56677776654
No 215
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=21.69 E-value=4.3e+02 Score=24.21 Aligned_cols=10 Identities=30% Similarity=0.192 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 024044 204 MEIMEIREAV 213 (273)
Q Consensus 204 meiME~rE~l 213 (273)
.|-|+.-|+|
T Consensus 46 ~Er~~h~eeL 55 (230)
T PF10146_consen 46 QERMAHVEEL 55 (230)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 216
>COG1545 Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]
Probab=21.49 E-value=44 Score=28.12 Aligned_cols=24 Identities=25% Similarity=0.645 Sum_probs=17.4
Q ss_pred CCCCCCCCCCCCCCCcccCCCCCCC
Q 024044 82 NATCWNCNEAPKAAPFLFCESCRSV 106 (273)
Q Consensus 82 ~~~Cw~C~~~~~~~~~~fC~~C~~i 106 (273)
...|.+||..-. .+.-.|+.|++-
T Consensus 29 g~kC~~CG~v~~-PPr~~Cp~C~~~ 52 (140)
T COG1545 29 GTKCKKCGRVYF-PPRAYCPKCGSE 52 (140)
T ss_pred EEEcCCCCeEEc-CCcccCCCCCCC
Confidence 478999999432 245689999973
No 217
>PF13446 RPT: A repeated domain in UCH-protein
Probab=21.35 E-value=3e+02 Score=19.33 Aligned_cols=26 Identities=8% Similarity=0.368 Sum_probs=21.5
Q ss_pred CcccccCcccCCCCCHHHHHHHHHHHHH
Q 024044 114 DYFQIFGLGKKYEIGNEKLEGKYKDWQK 141 (273)
Q Consensus 114 nyFellgl~~~f~Id~~~Lk~~Yr~Lqk 141 (273)
+-|+.||+++. ++...|-..|+....
T Consensus 6 ~Ay~~Lgi~~~--~~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 6 EAYEILGIDED--TDDDFIISAFQSKVN 31 (62)
T ss_pred HHHHHhCcCCC--CCHHHHHHHHHHHHH
Confidence 45889999885 489999999988776
No 218
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Probab=21.17 E-value=3.7e+02 Score=29.51 Aligned_cols=52 Identities=12% Similarity=0.353 Sum_probs=0.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH----------------------------------HHHHHhccCHHHHHH
Q 024044 209 IREAVEDAADSQTLKEIQSQMQEKLIHWGNS----------------------------------FADAYQNRNFDEARV 254 (273)
Q Consensus 209 ~rE~leea~d~~~L~~l~~~~~~~i~~~~~~----------------------------------l~~af~~~d~~~A~~ 254 (273)
++|.|+.--+.++|++|-+++++.+++..+. |.++.+.|+.++|.+
T Consensus 512 L~eAL~~gAsdeEI~~Lm~eLR~Am~~ym~~LAeq~~~~~~~~~~~~~~~~~~l~~~dLq~Mmd~ieela~~G~~~~A~q 591 (851)
T TIGR02302 512 LKDALERGASDEEIKQLTDKLRAAMQTYMRQLAQQLRNNPQQLARPLDPNTKVLRQQDLQNMMDQIENLARSGDRDQAKQ 591 (851)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcccccccCCccccccCHHHHHHHHHHHHHHHHcCCHHHHHH
Q ss_pred HHHHHH
Q 024044 255 CIRRMT 260 (273)
Q Consensus 255 ~l~kLk 260 (273)
.|..|+
T Consensus 592 lL~qlq 597 (851)
T TIGR02302 592 LLSQLQ 597 (851)
T ss_pred HHHHHH
No 219
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=21.12 E-value=76 Score=32.12 Aligned_cols=49 Identities=20% Similarity=0.392 Sum_probs=27.0
Q ss_pred CCCcccccccccccccccccc--ccccccccCCCCCCCCCCCCCCCCCcccCCCCCC
Q 024044 51 NPSLYCGLCYYFEILKFSGRS--FCSESAEKASNATCWNCNEAPKAAPFLFCESCRS 105 (273)
Q Consensus 51 ~~s~~~~~~~~~~~~~~~~r~--~~~~~~~~~~~~~Cw~C~~~~~~~~~~fC~~C~~ 105 (273)
+|...|.+|-+.....-+.=. |+.. .....|..||... .....||.|+.
T Consensus 211 a~~~~C~~Cg~~~~C~~C~~~l~~h~~----~~~l~Ch~Cg~~~--~~~~~Cp~C~s 261 (505)
T TIGR00595 211 SKNLLCRSCGYILCCPNCDVSLTYHKK----EGKLRCHYCGYQE--PIPKTCPQCGS 261 (505)
T ss_pred CCeeEhhhCcCccCCCCCCCceEEecC----CCeEEcCCCcCcC--CCCCCCCCCCC
Confidence 455567776444433322111 2221 1246899999952 22357999997
No 220
>PRK00423 tfb transcription initiation factor IIB; Reviewed
Probab=21.01 E-value=54 Score=30.99 Aligned_cols=25 Identities=20% Similarity=0.454 Sum_probs=15.9
Q ss_pred CCCCCCCCCCC----CCCcccCCCCCCCC
Q 024044 83 ATCWNCNEAPK----AAPFLFCESCRSVQ 107 (273)
Q Consensus 83 ~~Cw~C~~~~~----~~~~~fC~~C~~iq 107 (273)
..|+.|+.... .....+|..||.|-
T Consensus 12 ~~Cp~Cg~~~iv~d~~~Ge~vC~~CG~Vl 40 (310)
T PRK00423 12 LVCPECGSDKLIYDYERGEIVCADCGLVI 40 (310)
T ss_pred CcCcCCCCCCeeEECCCCeEeecccCCcc
Confidence 56888876221 23457788888865
No 221
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=20.94 E-value=43 Score=24.42 Aligned_cols=22 Identities=36% Similarity=0.767 Sum_probs=13.1
Q ss_pred cccccccccCCCCCCCCCCCCC
Q 024044 71 SFCSESAEKASNATCWNCNEAP 92 (273)
Q Consensus 71 ~~~~~~~~~~~~~~Cw~C~~~~ 92 (273)
+||.+-....-...|+|||+..
T Consensus 30 TFC~~C~e~~l~~~CPNCgGel 51 (57)
T PF06906_consen 30 TFCADCAETMLNGVCPNCGGEL 51 (57)
T ss_pred cccHHHHHHHhcCcCcCCCCcc
Confidence 4665554444456788887743
No 222
>COG4640 Predicted membrane protein [Function unknown]
Probab=20.91 E-value=55 Score=32.76 Aligned_cols=22 Identities=23% Similarity=0.520 Sum_probs=15.4
Q ss_pred CCCCCCCCCCCCCCcccCCCCCC
Q 024044 83 ATCWNCNEAPKAAPFLFCESCRS 105 (273)
Q Consensus 83 ~~Cw~C~~~~~~~~~~fC~~C~~ 105 (273)
..|++||..- .....+|+.||+
T Consensus 2 ~fC~kcG~qk-~Ed~~qC~qCG~ 23 (465)
T COG4640 2 KFCPKCGSQK-AEDDVQCTQCGH 23 (465)
T ss_pred Cccccccccc-ccccccccccCC
Confidence 4699999532 234566999997
No 223
>PRK05978 hypothetical protein; Provisional
Probab=20.90 E-value=93 Score=26.77 Aligned_cols=24 Identities=25% Similarity=0.631 Sum_probs=16.1
Q ss_pred CCCCCCCCCCCC----CCCcccCCCCCC
Q 024044 82 NATCWNCNEAPK----AAPFLFCESCRS 105 (273)
Q Consensus 82 ~~~Cw~C~~~~~----~~~~~fC~~C~~ 105 (273)
...|++|+.-.. ..-...|+.|+.
T Consensus 33 ~grCP~CG~G~LF~g~Lkv~~~C~~CG~ 60 (148)
T PRK05978 33 RGRCPACGEGKLFRAFLKPVDHCAACGE 60 (148)
T ss_pred cCcCCCCCCCcccccccccCCCccccCC
Confidence 378999998421 122346999997
No 224
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=20.90 E-value=2.9e+02 Score=26.48 Aligned_cols=11 Identities=18% Similarity=0.697 Sum_probs=6.4
Q ss_pred CCCCCCCCCCC
Q 024044 100 CESCRSVQPVD 110 (273)
Q Consensus 100 C~~C~~iqp~~ 110 (273)
|..=+.|.||+
T Consensus 45 C~dNHGikPP~ 55 (305)
T PF15290_consen 45 CGDNHGIKPPN 55 (305)
T ss_pred cccCCCCCCCC
Confidence 55555566664
No 225
>PF10279 Latarcin: Latarcin precursor; InterPro: IPR018802 This entry represents the precursor proteins for a number of short antimicrobial peptides called Latarcins. Latarcins were discovered in the venom of the spider Lachesana tarabaevi []. Latarcins are likely to adopt amphipathic alpha-helical structure in the plasma membrane. ; PDB: 2PCO_A 2G9P_A.
Probab=20.69 E-value=21 Score=27.65 Aligned_cols=44 Identities=16% Similarity=0.317 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHhccCHHHHHHHHHHH-HhHHHHHHHHHhh
Q 024044 229 MQEKLIHWGNSFADAYQNRNFDEARVCIRRM-TYYHRVNEEIAKK 272 (273)
Q Consensus 229 ~~~~i~~~~~~l~~af~~~d~~~A~~~l~kL-kYl~ki~~eI~~K 272 (273)
++.++.+..++|...++-.|.++|+.....| .+|.++...++++
T Consensus 36 ~~~rl~e~~e~l~k~~~~~~~EEARg~~~~~K~k~kk~~~~lkk~ 80 (81)
T PF10279_consen 36 VQGRLMEMVEQLRKVQGREDTEEARGAFQTFKPKFKKMREKLKKM 80 (81)
T ss_dssp --------------------------CHCHCHHHCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556777788888888888888888744333 3566666666654
No 226
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=20.50 E-value=9.7e+02 Score=24.90 Aligned_cols=35 Identities=14% Similarity=0.119 Sum_probs=27.2
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHhHHHHHHHHHh
Q 024044 237 GNSFADAYQNRNFDEARVCIRRMTYYHRVNEEIAK 271 (273)
Q Consensus 237 ~~~l~~af~~~d~~~A~~~l~kLkYl~ki~~eI~~ 271 (273)
......+|..+|.+.|+.++.+-+=+.++..+..+
T Consensus 455 ~~~a~~~l~~~D~~~ar~lv~~k~~~r~~e~~~~k 489 (533)
T COG1283 455 LRLAISVLVTGDLELARRLVERKKRVRRLERRSSK 489 (533)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344566689999999999999988888877764
No 227
>cd04476 RPA1_DBD_C RPA1_DBD_C: A subfamily of OB folds corresponding to the C-terminal OB fold, the ssDNA-binding domain (DBD)-C, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-C, RPA1 contains three other OB folds: DBD-A, DBD-B, and RPA1N. The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B. RPA1 DBD-C is involved in DNA binding and trimerization. It contains two structural insertions not found to date in other OB-folds: a zinc ribbon and a three-helix bundle. RPA1 DBD-C also contains a Cys4-type zinc-binding motif, which plays a role in the ssDNA binding fun
Probab=20.46 E-value=53 Score=27.71 Aligned_cols=24 Identities=25% Similarity=0.549 Sum_probs=18.4
Q ss_pred CCCCCCCCCCCCC--CcccCCCCCCC
Q 024044 83 ATCWNCNEAPKAA--PFLFCESCRSV 106 (273)
Q Consensus 83 ~~Cw~C~~~~~~~--~~~fC~~C~~i 106 (273)
..|+.|++..... ..++|+.|+..
T Consensus 35 ~aC~~C~kkv~~~~~~~~~C~~C~~~ 60 (166)
T cd04476 35 PACPGCNKKVVEEGNGTYRCEKCNKS 60 (166)
T ss_pred ccccccCcccEeCCCCcEECCCCCCc
Confidence 6799999954433 46899999986
No 228
>PF02150 RNA_POL_M_15KD: RNA polymerases M/15 Kd subunit; InterPro: IPR001529 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. In archaebacteria, there is generally a single form of RNA polymerase which also consist of an oligomeric assemblage of 10 to 13 polypeptides. It has recently been shown [], [] that small subunits of about 15 kDa, found in polymerase types I and II, are highly conserved. These proteins contain a probable zinc finger in their N-terminal region and a C-terminal zinc ribbon domain (see IPR001222 from INTERPRO).; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3H0G_I 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I ....
Probab=20.45 E-value=18 Score=23.45 Aligned_cols=27 Identities=19% Similarity=0.503 Sum_probs=14.5
Q ss_pred CCCCCCCCCC----CCCcccCCCCCCCCCCC
Q 024044 84 TCWNCNEAPK----AAPFLFCESCRSVQPVD 110 (273)
Q Consensus 84 ~Cw~C~~~~~----~~~~~fC~~C~~iqp~~ 110 (273)
-|+.|+.... ......|+.|+.+.|.+
T Consensus 3 FCp~C~nlL~p~~~~~~~~~C~~C~Y~~~~~ 33 (35)
T PF02150_consen 3 FCPECGNLLYPKEDKEKRVACRTCGYEEPIS 33 (35)
T ss_dssp BETTTTSBEEEEEETTTTEEESSSS-EEE-S
T ss_pred eCCCCCccceEcCCCccCcCCCCCCCccCCC
Confidence 4777877421 11111588898887764
No 229
>COG1656 Uncharacterized conserved protein [Function unknown]
Probab=20.17 E-value=50 Score=29.03 Aligned_cols=11 Identities=27% Similarity=0.528 Sum_probs=8.4
Q ss_pred CCCCCCCCCCC
Q 024044 82 NATCWNCNEAP 92 (273)
Q Consensus 82 ~~~Cw~C~~~~ 92 (273)
...|+-|++..
T Consensus 97 ~~RCp~CN~~L 107 (165)
T COG1656 97 FSRCPECNGEL 107 (165)
T ss_pred cccCcccCCEe
Confidence 36899999853
No 230
>PF11594 Med28: Mediator complex subunit 28; InterPro: IPR021640 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. Subunit Med28 of the Mediator may function as a scaffolding protein within Mediator by maintaining the stability of a submodule within the head module, and components of this submodule act together in a gene-regulatory programme to suppress smooth muscle cell differentiation. Thus, mammalian Mediator subunit Med28 functions as a repressor of smooth muscle-cell differentiation, which could have implications for disorders associated with abnormalities in smooth muscle cell growth and differentiation, including atherosclerosis, asthma, hypertension, and smooth muscle tumours [].
Probab=20.08 E-value=4.1e+02 Score=21.75 Aligned_cols=15 Identities=7% Similarity=0.434 Sum_probs=6.7
Q ss_pred HHHHHHhHHHHHHHH
Q 024044 255 CIRRMTYYHRVNEEI 269 (273)
Q Consensus 255 ~l~kLkYl~ki~~eI 269 (273)
+..++.||.+++.++
T Consensus 61 h~~kI~~w~~lL~d~ 75 (106)
T PF11594_consen 61 HYEKIDYWEKLLSDA 75 (106)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 231
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=20.08 E-value=63 Score=16.76 Aligned_cols=12 Identities=33% Similarity=0.484 Sum_probs=8.5
Q ss_pred HHHHHHHHHHhc
Q 024044 163 SGRVIEAYRTLT 174 (273)
Q Consensus 163 s~~IN~AY~tL~ 174 (273)
+..|..||+.|+
T Consensus 3 ~~~V~~aY~~l~ 14 (14)
T PF07709_consen 3 FEKVKNAYEQLS 14 (14)
T ss_pred HHHHHHHHHhcC
Confidence 456788888774
No 232
>PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=20.07 E-value=59 Score=26.13 Aligned_cols=23 Identities=17% Similarity=0.553 Sum_probs=13.5
Q ss_pred CCCCCCCCCCCC------CCcccCCCCCC
Q 024044 83 ATCWNCNEAPKA------APFLFCESCRS 105 (273)
Q Consensus 83 ~~Cw~C~~~~~~------~~~~fC~~C~~ 105 (273)
..|++|+..... .....|+.|+.
T Consensus 22 f~CP~Cge~~v~v~~~k~~~h~~C~~CG~ 50 (99)
T PRK14892 22 FECPRCGKVSISVKIKKNIAIITCGNCGL 50 (99)
T ss_pred eECCCCCCeEeeeecCCCcceEECCCCCC
Confidence 568888752110 12456888886
No 233
>PRK14873 primosome assembly protein PriA; Provisional
Probab=20.05 E-value=80 Score=33.34 Aligned_cols=14 Identities=29% Similarity=0.273 Sum_probs=7.2
Q ss_pred HHHHHhcCcchhHH
Q 024044 168 EAYRTLTNPLARAI 181 (273)
Q Consensus 168 ~AY~tL~dP~~Ra~ 181 (273)
.|-..|..|.=||.
T Consensus 496 daD~~L~~pDfRA~ 509 (665)
T PRK14873 496 DAWALLGRQDLRAA 509 (665)
T ss_pred cchhhhcCCCcChH
Confidence 34444555655554
Done!