Query 024046
Match_columns 273
No_of_seqs 112 out of 1322
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 17:15:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024046.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024046hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a6d_A Hydroxyindole O-methylt 100.0 1.3E-45 4.6E-50 334.6 19.9 246 21-272 5-261 (353)
2 3p9c_A Caffeic acid O-methyltr 100.0 3.4E-44 1.2E-48 326.7 22.6 256 17-272 13-276 (364)
3 3reo_A (ISO)eugenol O-methyltr 100.0 7E-44 2.4E-48 325.0 21.5 269 1-272 1-278 (368)
4 3lst_A CALO1 methyltransferase 100.0 2.2E-40 7.6E-45 299.6 21.7 240 21-271 19-263 (348)
5 1zg3_A Isoflavanone 4'-O-methy 100.0 3.5E-40 1.2E-44 299.3 19.1 251 19-272 5-268 (358)
6 1fp2_A Isoflavone O-methyltran 100.0 1.3E-39 4.4E-44 294.9 21.5 251 17-271 9-262 (352)
7 3gwz_A MMCR; methyltransferase 100.0 8.2E-40 2.8E-44 298.2 20.1 242 21-272 35-285 (369)
8 1fp1_D Isoliquiritigenin 2'-O- 100.0 1.3E-39 4.4E-44 297.1 21.1 259 13-271 11-283 (372)
9 3i53_A O-methyltransferase; CO 100.0 5.1E-40 1.7E-44 295.2 17.7 236 26-271 7-251 (332)
10 2ip2_A Probable phenazine-spec 100.0 1.3E-38 4.4E-43 286.0 19.7 235 23-271 7-249 (334)
11 3dp7_A SAM-dependent methyltra 100.0 1.2E-37 4.2E-42 283.2 16.5 241 16-272 7-265 (363)
12 1qzz_A RDMB, aclacinomycin-10- 100.0 1.7E-36 5.9E-41 276.0 18.9 240 22-271 14-264 (374)
13 1tw3_A COMT, carminomycin 4-O- 100.0 9.3E-36 3.2E-40 269.9 19.3 239 23-271 18-265 (360)
14 1x19_A CRTF-related protein; m 100.0 2E-35 6.7E-40 268.1 20.9 233 18-271 24-272 (359)
15 2r3s_A Uncharacterized protein 100.0 1.5E-34 5.2E-39 259.2 19.7 229 26-271 8-248 (335)
16 3mcz_A O-methyltransferase; ad 100.0 6.6E-34 2.2E-38 257.0 16.9 228 24-271 24-264 (352)
17 2qm3_A Predicted methyltransfe 99.4 2.7E-12 9.2E-17 116.6 13.2 188 48-266 47-252 (373)
18 4gek_A TRNA (CMO5U34)-methyltr 99.0 2.1E-10 7.2E-15 99.1 6.5 77 195-271 68-155 (261)
19 3dtn_A Putative methyltransfer 99.0 4.7E-10 1.6E-14 94.4 7.7 85 187-271 34-125 (234)
20 3ege_A Putative methyltransfer 99.0 2.3E-09 7.8E-14 92.1 10.4 82 186-270 24-109 (261)
21 2qe6_A Uncharacterized protein 99.0 2.1E-09 7.2E-14 93.4 10.1 77 196-272 76-174 (274)
22 1ve3_A Hypothetical protein PH 99.0 1.1E-09 3.8E-14 91.4 7.4 72 196-269 37-117 (227)
23 3dlc_A Putative S-adenosyl-L-m 98.9 1.6E-09 5.4E-14 89.6 7.4 82 186-270 34-126 (219)
24 1vl5_A Unknown conserved prote 98.9 1.5E-09 5.2E-14 92.9 7.5 84 185-271 26-119 (260)
25 3dh0_A SAM dependent methyltra 98.9 2.5E-09 8.6E-14 88.9 7.2 84 186-270 27-121 (219)
26 3ou2_A SAM-dependent methyltra 98.9 8.3E-09 2.8E-13 85.4 10.0 84 186-271 35-123 (218)
27 2o57_A Putative sarcosine dime 98.9 5.6E-09 1.9E-13 91.1 8.5 83 186-270 68-165 (297)
28 2p35_A Trans-aconitate 2-methy 98.9 4.3E-09 1.5E-13 89.6 7.6 83 187-270 24-110 (259)
29 3mgg_A Methyltransferase; NYSG 98.9 5.4E-09 1.8E-13 90.1 8.3 77 195-271 35-121 (276)
30 3bus_A REBM, methyltransferase 98.8 8E-09 2.7E-13 88.8 9.2 83 186-270 51-144 (273)
31 1nkv_A Hypothetical protein YJ 98.8 8.7E-09 3E-13 87.7 9.2 84 185-270 25-118 (256)
32 1xxl_A YCGJ protein; structura 98.8 8E-09 2.7E-13 87.4 8.3 83 185-270 10-102 (239)
33 3jwh_A HEN1; methyltransferase 98.8 3.7E-09 1.3E-13 88.0 6.1 77 195-271 27-118 (217)
34 3gu3_A Methyltransferase; alph 98.8 6.3E-09 2.2E-13 90.5 7.9 83 188-270 13-104 (284)
35 3dli_A Methyltransferase; PSI- 98.8 9.8E-09 3.4E-13 86.8 8.8 83 185-271 29-117 (240)
36 3jwg_A HEN1, methyltransferase 98.8 3.6E-09 1.2E-13 88.1 5.9 76 196-271 28-118 (219)
37 4hg2_A Methyltransferase type 98.8 6.2E-09 2.1E-13 89.7 7.3 72 196-269 38-113 (257)
38 3ujc_A Phosphoethanolamine N-m 98.8 8.4E-09 2.9E-13 88.0 8.0 82 186-269 45-134 (266)
39 3vc1_A Geranyl diphosphate 2-C 98.8 2.4E-08 8.1E-13 88.0 10.6 85 184-269 104-199 (312)
40 3f4k_A Putative methyltransfer 98.8 1.4E-08 4.6E-13 86.5 8.7 81 187-268 36-127 (257)
41 3bkw_A MLL3908 protein, S-aden 98.8 1.7E-08 5.7E-13 85.0 8.9 82 187-270 34-122 (243)
42 3g5l_A Putative S-adenosylmeth 98.8 1.1E-08 3.9E-13 86.9 7.9 83 186-270 34-123 (253)
43 3kkz_A Uncharacterized protein 98.8 1.5E-08 5.2E-13 87.0 8.3 80 188-268 37-127 (267)
44 3g5t_A Trans-aconitate 3-methy 98.8 3E-08 1E-12 86.7 10.3 73 196-268 35-126 (299)
45 3hem_A Cyclopropane-fatty-acyl 98.8 1.8E-08 6.2E-13 88.2 8.5 83 186-271 62-153 (302)
46 2p7i_A Hypothetical protein; p 98.7 1.3E-08 4.4E-13 85.7 6.6 74 196-271 41-119 (250)
47 3ccf_A Cyclopropane-fatty-acyl 98.7 2.4E-08 8.1E-13 86.4 8.0 82 186-270 47-132 (279)
48 3bkx_A SAM-dependent methyltra 98.7 1.5E-08 5.3E-13 87.1 6.7 85 186-271 33-138 (275)
49 3hnr_A Probable methyltransfer 98.7 1.6E-08 5.6E-13 84.0 6.5 82 187-271 36-122 (220)
50 2yqz_A Hypothetical protein TT 98.7 4E-08 1.4E-12 83.7 9.0 74 195-270 37-119 (263)
51 1pjz_A Thiopurine S-methyltran 98.7 9E-09 3.1E-13 85.2 4.8 80 188-270 14-116 (203)
52 3l8d_A Methyltransferase; stru 98.7 4.1E-08 1.4E-12 82.7 8.6 74 195-270 51-131 (242)
53 3g07_A 7SK snRNA methylphospha 98.7 2.6E-08 9E-13 87.1 7.6 44 195-238 44-88 (292)
54 1kpg_A CFA synthase;, cyclopro 98.7 3.7E-08 1.3E-12 85.4 8.5 83 186-271 54-145 (287)
55 1xtp_A LMAJ004091AAA; SGPP, st 98.7 1.8E-08 6.3E-13 85.4 6.5 83 186-270 83-173 (254)
56 3h2b_A SAM-dependent methyltra 98.7 1.5E-08 5E-13 83.3 5.6 73 198-272 42-119 (203)
57 3ocj_A Putative exported prote 98.7 9.4E-09 3.2E-13 90.3 4.0 77 195-271 116-203 (305)
58 3ofk_A Nodulation protein S; N 98.7 1E-08 3.6E-13 85.0 4.0 74 195-270 49-129 (216)
59 4fsd_A Arsenic methyltransfera 98.7 3.4E-08 1.2E-12 89.7 7.6 75 196-270 82-181 (383)
60 3e05_A Precorrin-6Y C5,15-meth 98.7 8.5E-08 2.9E-12 78.9 9.2 80 187-267 31-120 (204)
61 2xvm_A Tellurite resistance pr 98.7 4.5E-08 1.5E-12 79.7 7.4 82 187-271 23-113 (199)
62 3i9f_A Putative type 11 methyl 98.7 1.2E-08 4E-13 81.5 3.8 78 188-270 9-90 (170)
63 4htf_A S-adenosylmethionine-de 98.7 3.4E-08 1.2E-12 85.6 6.8 80 187-270 60-151 (285)
64 3q87_B N6 adenine specific DNA 98.6 8.9E-08 3E-12 76.9 8.6 69 197-271 23-94 (170)
65 3hm2_A Precorrin-6Y C5,15-meth 98.6 4E-08 1.4E-12 78.6 6.2 78 188-267 17-106 (178)
66 3pfg_A N-methyltransferase; N, 98.6 6.6E-08 2.2E-12 82.7 7.8 74 195-270 48-126 (263)
67 3uwp_A Histone-lysine N-methyl 98.6 5.8E-08 2E-12 88.5 7.5 80 186-266 163-263 (438)
68 2fk8_A Methoxy mycolic acid sy 98.6 7.4E-08 2.5E-12 84.9 7.6 82 186-270 80-170 (318)
69 3cc8_A Putative methyltransfer 98.6 1.1E-07 3.7E-12 79.0 8.0 81 186-271 23-109 (230)
70 3ggd_A SAM-dependent methyltra 98.6 4.6E-08 1.6E-12 82.8 5.7 75 195-271 54-140 (245)
71 3thr_A Glycine N-methyltransfe 98.6 5.2E-08 1.8E-12 84.6 5.8 80 188-270 49-146 (293)
72 3fzg_A 16S rRNA methylase; met 98.6 2.4E-08 8.4E-13 81.7 3.4 72 195-268 47-128 (200)
73 3lcc_A Putative methyl chlorid 98.6 4E-08 1.4E-12 82.6 4.8 71 199-271 68-148 (235)
74 2b3t_A Protein methyltransfera 98.6 1.5E-07 5.2E-12 81.3 8.4 75 186-262 100-183 (276)
75 1yzh_A TRNA (guanine-N(7)-)-me 98.6 1.4E-07 4.7E-12 78.4 7.8 68 197-264 41-120 (214)
76 3kr9_A SAM-dependent methyltra 98.6 6E-08 2.1E-12 81.7 5.4 69 196-264 14-93 (225)
77 3sm3_A SAM-dependent methyltra 98.5 1.6E-07 5.6E-12 78.3 7.8 75 195-271 28-117 (235)
78 3e23_A Uncharacterized protein 98.5 1E-07 3.5E-12 78.7 6.2 74 195-270 41-117 (211)
79 2ex4_A Adrenal gland protein A 98.5 5.5E-08 1.9E-12 82.2 4.6 74 197-271 79-162 (241)
80 1jsx_A Glucose-inhibited divis 98.5 8.3E-08 2.8E-12 78.9 5.5 66 198-263 66-140 (207)
81 3lec_A NADB-rossmann superfami 98.5 7.6E-08 2.6E-12 81.3 5.1 69 196-264 20-99 (230)
82 2yxe_A Protein-L-isoaspartate 98.5 2.1E-07 7.1E-12 77.1 7.7 82 187-269 68-160 (215)
83 3lbf_A Protein-L-isoaspartate 98.5 2.4E-07 8.2E-12 76.4 8.0 81 187-270 68-158 (210)
84 3mq2_A 16S rRNA methyltransfer 98.5 3.4E-07 1.2E-11 76.0 9.0 70 190-260 21-103 (218)
85 1jg1_A PIMT;, protein-L-isoasp 98.5 1.3E-07 4.6E-12 79.7 6.4 84 185-270 80-173 (235)
86 3gnl_A Uncharacterized protein 98.5 9.2E-08 3.2E-12 81.5 5.1 69 196-264 20-99 (244)
87 4dcm_A Ribosomal RNA large sub 98.5 2.2E-07 7.7E-12 84.2 7.9 80 187-267 213-304 (375)
88 3m70_A Tellurite resistance pr 98.5 1.6E-07 5.5E-12 81.4 6.7 82 187-271 111-200 (286)
89 3cgg_A SAM-dependent methyltra 98.5 4.5E-07 1.5E-11 73.2 8.9 80 187-270 38-123 (195)
90 2yxd_A Probable cobalt-precorr 98.5 1.5E-07 5E-12 75.4 5.8 75 187-264 26-109 (183)
91 1af7_A Chemotaxis receptor met 98.5 1.2E-07 4.1E-12 82.3 5.4 75 197-271 105-229 (274)
92 2p8j_A S-adenosylmethionine-de 98.5 2.1E-07 7.2E-12 76.4 6.6 74 195-269 21-103 (209)
93 3htx_A HEN1; HEN1, small RNA m 98.5 1.4E-07 4.9E-12 92.3 6.3 83 188-271 713-812 (950)
94 3bxo_A N,N-dimethyltransferase 98.5 2E-07 7E-12 78.1 6.6 73 196-270 39-116 (239)
95 3mb5_A SAM-dependent methyltra 98.5 2.6E-07 9E-12 78.6 7.4 75 186-261 83-168 (255)
96 3g2m_A PCZA361.24; SAM-depende 98.5 2E-07 6.7E-12 81.4 6.5 81 185-269 72-165 (299)
97 3d2l_A SAM-dependent methyltra 98.5 4.1E-07 1.4E-11 76.4 8.1 72 195-269 31-111 (243)
98 4dzr_A Protein-(glutamine-N5) 98.5 5.8E-08 2E-12 79.9 2.7 76 187-262 20-108 (215)
99 1wzn_A SAM-dependent methyltra 98.5 8.4E-07 2.9E-11 75.1 10.0 80 187-269 32-120 (252)
100 3e8s_A Putative SAM dependent 98.4 1.8E-07 6.2E-12 77.5 5.7 80 187-270 43-130 (227)
101 1yb2_A Hypothetical protein TA 98.4 1.7E-07 5.7E-12 81.1 5.5 74 187-261 101-185 (275)
102 2fca_A TRNA (guanine-N(7)-)-me 98.4 2.1E-07 7.3E-12 77.5 5.8 66 197-262 38-115 (213)
103 2gb4_A Thiopurine S-methyltran 98.4 1.7E-07 5.8E-12 80.3 5.1 74 196-271 67-168 (252)
104 3dxy_A TRNA (guanine-N(7)-)-me 98.4 2.3E-07 8E-12 77.7 5.8 66 197-262 34-112 (218)
105 3iv6_A Putative Zn-dependent a 98.4 1.4E-07 4.9E-12 81.3 4.5 83 186-271 35-126 (261)
106 1dus_A MJ0882; hypothetical pr 98.4 5.1E-07 1.7E-11 72.8 7.5 79 186-267 42-131 (194)
107 2pjd_A Ribosomal RNA small sub 98.4 2.7E-07 9.1E-12 82.5 6.2 81 186-267 186-273 (343)
108 1y8c_A S-adenosylmethionine-de 98.4 4.9E-07 1.7E-11 75.9 7.4 72 197-270 37-117 (246)
109 3b3j_A Histone-arginine methyl 98.4 3.5E-07 1.2E-11 85.5 7.1 85 185-271 147-240 (480)
110 2plw_A Ribosomal RNA methyltra 98.4 7.9E-07 2.7E-11 72.6 8.4 62 187-252 12-75 (201)
111 1vlm_A SAM-dependent methyltra 98.4 4.9E-07 1.7E-11 75.2 7.2 66 198-270 48-117 (219)
112 2pxx_A Uncharacterized protein 98.4 3.2E-07 1.1E-11 75.4 6.0 72 196-268 41-120 (215)
113 1nv8_A HEMK protein; class I a 98.4 3E-07 1E-11 80.1 6.1 65 197-262 123-199 (284)
114 2zfu_A Nucleomethylin, cerebra 98.4 8.3E-07 2.8E-11 73.4 8.2 68 186-266 56-126 (215)
115 2gs9_A Hypothetical protein TT 98.4 3.1E-07 1.1E-11 75.7 5.6 76 188-270 29-110 (211)
116 3ckk_A TRNA (guanine-N(7)-)-me 98.4 5.1E-07 1.8E-11 76.5 6.9 67 196-262 45-130 (235)
117 1vbf_A 231AA long hypothetical 98.4 8.4E-07 2.9E-11 74.2 8.0 81 186-269 60-148 (231)
118 1fbn_A MJ fibrillarin homologu 98.4 1.8E-06 6E-11 72.5 9.9 66 195-260 72-148 (230)
119 2y1w_A Histone-arginine methyl 98.4 8.3E-07 2.8E-11 79.5 8.2 85 186-272 40-133 (348)
120 2vdv_E TRNA (guanine-N(7)-)-me 98.4 4.9E-07 1.7E-11 76.8 6.4 58 195-252 47-119 (246)
121 3ntv_A MW1564 protein; rossman 98.3 3.8E-07 1.3E-11 76.8 5.1 69 195-263 69-150 (232)
122 3gjy_A Spermidine synthase; AP 98.3 4E-07 1.4E-11 80.5 5.3 69 198-266 90-170 (317)
123 3grz_A L11 mtase, ribosomal pr 98.3 9.7E-07 3.3E-11 72.5 7.3 72 195-267 58-137 (205)
124 3p2e_A 16S rRNA methylase; met 98.3 7.9E-07 2.7E-11 74.8 6.7 69 196-265 23-104 (225)
125 1ne2_A Hypothetical protein TA 98.3 7.5E-07 2.6E-11 72.9 6.2 74 195-270 49-125 (200)
126 1qam_A ERMC' methyltransferase 98.3 8.9E-07 3E-11 75.4 6.8 77 185-264 19-102 (244)
127 1ri5_A MRNA capping enzyme; me 98.3 7.2E-07 2.5E-11 77.2 6.3 72 195-267 62-145 (298)
128 3njr_A Precorrin-6Y methylase; 98.3 1.7E-06 5.7E-11 71.5 8.1 74 188-264 47-131 (204)
129 2pwy_A TRNA (adenine-N(1)-)-me 98.3 1.5E-06 5.2E-11 73.7 7.9 75 186-261 86-172 (258)
130 2h00_A Methyltransferase 10 do 98.3 7.7E-07 2.6E-11 75.7 5.9 70 197-266 65-151 (254)
131 1dl5_A Protein-L-isoaspartate 98.3 1.3E-06 4.5E-11 77.1 7.6 82 187-269 66-158 (317)
132 1ej0_A FTSJ; methyltransferase 98.3 1.2E-06 4.3E-11 69.2 6.7 79 187-269 12-102 (180)
133 2fyt_A Protein arginine N-meth 98.3 2.3E-06 7.9E-11 76.4 9.2 76 187-264 55-140 (340)
134 3q7e_A Protein arginine N-meth 98.3 8.4E-07 2.9E-11 79.5 6.3 72 196-268 65-146 (349)
135 3tfw_A Putative O-methyltransf 98.3 6.2E-07 2.1E-11 76.4 5.1 69 195-263 61-144 (248)
136 1l3i_A Precorrin-6Y methyltran 98.3 7.2E-07 2.5E-11 71.7 5.2 78 188-268 25-113 (192)
137 3orh_A Guanidinoacetate N-meth 98.3 4.3E-07 1.5E-11 76.8 3.9 65 196-261 59-134 (236)
138 1o54_A SAM-dependent O-methylt 98.3 1.3E-06 4.3E-11 75.5 6.8 75 186-261 102-187 (277)
139 2esr_A Methyltransferase; stru 98.3 7.1E-07 2.4E-11 71.5 4.8 70 195-265 29-110 (177)
140 1xdz_A Methyltransferase GIDB; 98.3 6E-07 2E-11 75.9 4.6 70 195-264 68-150 (240)
141 3u81_A Catechol O-methyltransf 98.3 6E-07 2.1E-11 74.9 4.4 73 196-268 57-147 (221)
142 3eey_A Putative rRNA methylase 98.3 1E-06 3.4E-11 71.9 5.7 71 195-265 20-103 (197)
143 3frh_A 16S rRNA methylase; met 98.3 1.1E-06 3.7E-11 74.5 5.9 71 195-268 103-181 (253)
144 3fpf_A Mtnas, putative unchara 98.3 1.4E-06 4.7E-11 76.2 6.8 69 195-264 120-197 (298)
145 2gpy_A O-methyltransferase; st 98.3 8.5E-07 2.9E-11 74.5 5.2 72 196-267 53-138 (233)
146 3gdh_A Trimethylguanosine synt 98.2 6E-07 2E-11 75.7 4.3 72 197-270 78-159 (241)
147 2ozv_A Hypothetical protein AT 98.2 1.5E-06 5.1E-11 74.6 6.8 68 195-262 34-122 (260)
148 1zq9_A Probable dimethyladenos 98.2 2E-06 6.7E-11 75.0 7.6 75 185-262 17-100 (285)
149 3g89_A Ribosomal RNA small sub 98.2 8.3E-07 2.8E-11 75.8 5.1 69 196-264 79-160 (249)
150 3bgv_A MRNA CAP guanine-N7 met 98.2 4E-06 1.4E-10 73.6 9.5 72 196-268 33-127 (313)
151 3adn_A Spermidine synthase; am 98.2 1.2E-06 4.1E-11 76.7 5.8 67 196-262 82-164 (294)
152 2fhp_A Methylase, putative; al 98.2 8.3E-07 2.8E-11 71.4 4.5 71 195-266 42-127 (187)
153 3m33_A Uncharacterized protein 98.2 2.3E-06 8E-11 71.5 7.4 65 196-262 47-118 (226)
154 2aot_A HMT, histamine N-methyl 98.2 2.4E-06 8.3E-11 74.3 7.6 75 197-271 52-151 (292)
155 2avn_A Ubiquinone/menaquinone 98.2 1.4E-06 4.8E-11 74.4 5.8 71 197-269 54-128 (260)
156 1o9g_A RRNA methyltransferase; 98.2 1.7E-06 5.9E-11 73.4 6.1 73 197-269 51-182 (250)
157 3lpm_A Putative methyltransfer 98.2 1.8E-06 6.1E-11 73.9 6.2 67 195-262 46-126 (259)
158 1g6q_1 HnRNP arginine N-methyl 98.2 2.4E-06 8.1E-11 75.9 7.0 72 196-268 37-118 (328)
159 1p91_A Ribosomal RNA large sub 98.2 1.9E-06 6.5E-11 73.7 6.1 69 196-264 84-157 (269)
160 3tma_A Methyltransferase; thum 98.2 2.2E-06 7.4E-11 76.8 6.7 77 185-262 192-279 (354)
161 3mti_A RRNA methylase; SAM-dep 98.2 1.9E-06 6.6E-11 69.4 5.8 66 195-262 20-96 (185)
162 1zx0_A Guanidinoacetate N-meth 98.2 1.1E-06 3.7E-11 74.0 4.2 68 196-264 59-138 (236)
163 3duw_A OMT, O-methyltransferas 98.2 7.3E-07 2.5E-11 74.2 3.0 70 195-264 56-142 (223)
164 1nt2_A Fibrillarin-like PRE-rR 98.2 3.7E-06 1.3E-10 69.9 7.3 68 195-262 55-133 (210)
165 3p9n_A Possible methyltransfer 98.2 2.5E-06 8.6E-11 69.2 6.1 71 196-267 43-125 (189)
166 1iy9_A Spermidine synthase; ro 98.2 2.3E-06 7.9E-11 74.2 6.1 70 196-265 74-158 (275)
167 3bwc_A Spermidine synthase; SA 98.2 1.5E-06 5.2E-11 76.4 5.0 75 196-270 94-184 (304)
168 1u2z_A Histone-lysine N-methyl 98.2 4.6E-06 1.6E-10 76.8 8.3 79 187-266 233-334 (433)
169 3gru_A Dimethyladenosine trans 98.1 4E-06 1.4E-10 73.5 7.5 75 185-262 39-121 (295)
170 3r0q_C Probable protein argini 98.1 3.6E-06 1.2E-10 76.2 7.3 75 195-270 61-144 (376)
171 3giw_A Protein of unknown func 98.1 7.5E-06 2.6E-10 70.8 8.7 77 196-272 77-177 (277)
172 2bm8_A Cephalosporin hydroxyla 98.1 2.9E-06 1E-10 71.7 6.1 68 197-264 81-161 (236)
173 3evz_A Methyltransferase; NYSG 98.1 3.8E-06 1.3E-10 70.1 6.7 73 195-268 53-136 (230)
174 1r18_A Protein-L-isoaspartate( 98.1 3.3E-06 1.1E-10 70.5 6.3 75 195-269 82-177 (227)
175 1g8a_A Fibrillarin-like PRE-rR 98.1 6.1E-06 2.1E-10 68.8 7.9 69 195-263 71-151 (227)
176 3ftd_A Dimethyladenosine trans 98.1 5.1E-06 1.7E-10 71.0 7.3 78 186-265 21-104 (249)
177 3tr6_A O-methyltransferase; ce 98.1 9.2E-07 3.1E-11 73.6 2.5 69 196-264 63-149 (225)
178 3lcv_B Sisomicin-gentamicin re 98.1 1.2E-06 4.1E-11 75.0 3.1 75 196-270 131-213 (281)
179 4e2x_A TCAB9; kijanose, tetron 98.1 1.9E-06 6.6E-11 78.7 4.5 81 185-270 96-186 (416)
180 2ipx_A RRNA 2'-O-methyltransfe 98.1 2.7E-06 9.4E-11 71.3 5.1 68 195-262 75-154 (233)
181 3uzu_A Ribosomal RNA small sub 98.1 2.7E-06 9.2E-11 74.0 5.1 68 186-254 32-105 (279)
182 2kw5_A SLR1183 protein; struct 98.1 4.4E-06 1.5E-10 68.2 6.2 61 200-262 32-101 (202)
183 1i9g_A Hypothetical protein RV 98.1 6.6E-06 2.3E-10 70.7 7.4 75 186-261 89-177 (280)
184 2b25_A Hypothetical protein; s 98.1 7.2E-06 2.5E-10 72.8 7.6 76 186-262 95-194 (336)
185 1m6y_A S-adenosyl-methyltransf 98.1 4.4E-06 1.5E-10 73.4 6.1 76 185-261 15-104 (301)
186 3tm4_A TRNA (guanine N2-)-meth 98.1 4.8E-06 1.6E-10 75.3 6.3 68 195-262 215-293 (373)
187 2avd_A Catechol-O-methyltransf 98.1 2.3E-06 7.8E-11 71.4 3.8 69 195-263 67-153 (229)
188 2nxc_A L11 mtase, ribosomal pr 98.0 2.2E-06 7.5E-11 73.3 3.7 69 195-265 118-194 (254)
189 2pbf_A Protein-L-isoaspartate 98.0 7E-06 2.4E-10 68.3 6.7 74 195-268 78-175 (227)
190 3fut_A Dimethyladenosine trans 98.0 6.9E-06 2.4E-10 71.1 6.8 78 186-267 37-121 (271)
191 2frn_A Hypothetical protein PH 98.0 4.1E-06 1.4E-10 72.5 5.4 67 195-262 123-199 (278)
192 1ws6_A Methyltransferase; stru 98.0 1.4E-06 4.9E-11 68.9 2.2 68 197-266 41-121 (171)
193 2hnk_A SAM-dependent O-methylt 98.0 2.5E-06 8.5E-11 71.9 3.8 57 195-251 58-123 (239)
194 2i62_A Nicotinamide N-methyltr 98.0 2E-06 6.7E-11 73.1 3.1 72 196-268 55-170 (265)
195 1wy7_A Hypothetical protein PH 98.0 9.5E-06 3.3E-10 66.5 7.0 72 196-269 48-126 (207)
196 2h1r_A Dimethyladenosine trans 98.0 4.8E-06 1.6E-10 73.0 5.4 73 186-261 32-112 (299)
197 2fpo_A Methylase YHHF; structu 98.0 4.2E-06 1.4E-10 68.9 4.8 69 197-266 54-133 (202)
198 3c3p_A Methyltransferase; NP_9 98.0 3.3E-06 1.1E-10 69.6 4.1 67 196-262 55-133 (210)
199 1xj5_A Spermidine synthase 1; 98.0 4.4E-06 1.5E-10 74.5 5.1 69 195-263 118-202 (334)
200 2nyu_A Putative ribosomal RNA 98.0 1.5E-05 5.2E-10 64.5 7.8 74 188-265 13-107 (196)
201 4azs_A Methyltransferase WBDD; 98.0 1.7E-06 5.9E-11 82.5 2.3 74 196-271 65-150 (569)
202 2o07_A Spermidine synthase; st 98.0 4.3E-06 1.5E-10 73.5 4.7 70 195-264 93-177 (304)
203 2yvl_A TRMI protein, hypotheti 98.0 1.4E-05 4.9E-10 67.1 7.7 72 187-261 82-164 (248)
204 3dr5_A Putative O-methyltransf 98.0 4.2E-06 1.4E-10 70.1 4.3 67 198-264 57-138 (221)
205 3dou_A Ribosomal RNA large sub 98.0 1.3E-05 4.4E-10 65.5 7.0 62 184-251 12-73 (191)
206 3a27_A TYW2, uncharacterized p 98.0 6.9E-06 2.4E-10 70.9 5.6 69 195-263 117-194 (272)
207 1inl_A Spermidine synthase; be 98.0 5.3E-06 1.8E-10 72.6 4.8 67 196-262 89-170 (296)
208 2ih2_A Modification methylase 98.0 1.1E-05 3.9E-10 73.4 7.2 72 187-262 30-105 (421)
209 1uir_A Polyamine aminopropyltr 98.0 4.4E-06 1.5E-10 73.7 4.3 72 196-267 76-163 (314)
210 2vdw_A Vaccinia virus capping 98.0 8.3E-06 2.8E-10 71.6 5.9 71 197-268 48-142 (302)
211 3r3h_A O-methyltransferase, SA 98.0 1.6E-06 5.5E-11 73.7 1.1 69 196-264 59-145 (242)
212 2pt6_A Spermidine synthase; tr 98.0 4.5E-06 1.5E-10 74.0 4.0 68 196-263 115-197 (321)
213 1sui_A Caffeoyl-COA O-methyltr 98.0 3.6E-06 1.2E-10 71.7 3.2 69 195-263 77-164 (247)
214 1i1n_A Protein-L-isoaspartate 97.9 1.4E-05 4.9E-10 66.4 6.8 74 195-268 75-164 (226)
215 3tqs_A Ribosomal RNA small sub 97.9 7.5E-06 2.6E-10 70.2 4.9 67 185-254 18-90 (255)
216 3bzb_A Uncharacterized protein 97.9 1.7E-05 5.8E-10 68.7 7.1 74 195-269 77-177 (281)
217 1mjf_A Spermidine synthase; sp 97.9 7.8E-06 2.7E-10 71.0 4.8 68 196-264 74-161 (281)
218 2ift_A Putative methylase HI07 97.9 5.4E-06 1.8E-10 68.2 3.6 69 197-266 53-136 (201)
219 1yub_A Ermam, rRNA methyltrans 97.9 7.3E-06 2.5E-10 69.5 4.3 75 186-263 19-100 (245)
220 2i7c_A Spermidine synthase; tr 97.9 7.9E-06 2.7E-10 71.0 4.6 68 196-263 77-159 (283)
221 3c3y_A Pfomt, O-methyltransfer 97.9 7.2E-06 2.5E-10 69.3 4.2 69 195-263 68-155 (237)
222 3k0b_A Predicted N6-adenine-sp 97.9 1.8E-05 6.3E-10 72.0 7.0 77 185-262 190-314 (393)
223 2b2c_A Spermidine synthase; be 97.9 7E-06 2.4E-10 72.5 3.8 68 196-263 107-189 (314)
224 2cmg_A Spermidine synthase; tr 97.9 1.9E-05 6.6E-10 67.9 6.4 64 196-262 71-146 (262)
225 3ldu_A Putative methylase; str 97.9 1.7E-05 5.9E-10 72.0 6.3 76 185-261 184-307 (385)
226 3cbg_A O-methyltransferase; cy 97.8 7.3E-06 2.5E-10 68.9 2.9 69 196-264 71-157 (232)
227 1qyr_A KSGA, high level kasuga 97.8 2E-05 6.9E-10 67.4 5.6 67 185-254 10-82 (252)
228 3ldg_A Putative uncharacterize 97.8 3E-05 1E-09 70.4 7.0 78 184-262 182-307 (384)
229 4df3_A Fibrillarin-like rRNA/T 97.8 5.1E-05 1.8E-09 64.1 7.8 68 195-262 75-154 (233)
230 2g72_A Phenylethanolamine N-me 97.8 9.2E-06 3.1E-10 70.4 3.1 72 197-269 71-188 (289)
231 3dmg_A Probable ribosomal RNA 97.8 2.5E-05 8.6E-10 70.8 6.0 69 197-267 233-310 (381)
232 1uwv_A 23S rRNA (uracil-5-)-me 97.8 3.8E-05 1.3E-09 70.8 7.0 72 187-261 277-362 (433)
233 4hc4_A Protein arginine N-meth 97.7 4.1E-05 1.4E-09 69.2 6.3 64 197-261 83-155 (376)
234 3sso_A Methyltransferase; macr 97.7 1.8E-05 6E-10 72.0 3.8 69 196-268 215-300 (419)
235 3id6_C Fibrillarin-like rRNA/T 97.7 0.00011 3.9E-09 61.9 8.5 77 187-263 64-154 (232)
236 2oxt_A Nucleoside-2'-O-methylt 97.7 6.2E-05 2.1E-09 64.8 6.6 66 195-264 72-149 (265)
237 3b73_A PHIH1 repressor-like pr 97.7 4.9E-05 1.7E-09 56.6 5.0 64 45-115 14-79 (111)
238 1ixk_A Methyltransferase; open 97.7 6E-05 2E-09 66.4 6.3 67 195-261 116-193 (315)
239 2wa2_A Non-structural protein 97.7 5.8E-05 2E-09 65.4 6.1 66 195-264 80-157 (276)
240 2f8l_A Hypothetical protein LM 97.7 3.2E-05 1.1E-09 68.9 4.6 74 196-269 129-215 (344)
241 2a14_A Indolethylamine N-methy 97.7 7.9E-06 2.7E-10 70.0 0.5 72 196-268 54-169 (263)
242 1xmk_A Double-stranded RNA-spe 97.6 6.1E-05 2.1E-09 52.5 4.8 62 45-111 12-74 (79)
243 2r6z_A UPF0341 protein in RSP 97.6 3.9E-05 1.3E-09 65.8 3.9 69 195-265 81-171 (258)
244 3o4f_A Spermidine synthase; am 97.6 0.0001 3.5E-09 64.3 6.3 66 196-261 82-163 (294)
245 3k6r_A Putative transferase PH 97.5 6.8E-05 2.3E-09 65.0 4.8 67 195-262 123-199 (278)
246 1y0u_A Arsenical resistance op 97.5 0.00023 7.8E-09 51.2 6.6 62 39-110 26-87 (96)
247 2yxl_A PH0851 protein, 450AA l 97.5 0.00021 7.1E-09 66.1 7.8 71 190-261 253-336 (450)
248 3ajd_A Putative methyltransfer 97.5 8.4E-05 2.9E-09 64.0 4.8 68 195-262 81-163 (274)
249 2p41_A Type II methyltransfera 97.5 0.00015 5.2E-09 63.6 6.3 68 195-265 80-158 (305)
250 2qfm_A Spermine synthase; sper 97.4 7.9E-05 2.7E-09 66.8 3.1 66 196-262 187-274 (364)
251 3hp7_A Hemolysin, putative; st 97.4 0.00031 1.1E-08 61.2 6.7 80 186-267 74-163 (291)
252 2igt_A SAM dependent methyltra 97.4 8.1E-05 2.8E-09 66.1 3.1 63 197-261 153-231 (332)
253 2jjq_A Uncharacterized RNA met 97.3 0.00032 1.1E-08 64.4 6.8 63 196-261 289-359 (425)
254 3pqk_A Biofilm growth-associat 97.3 0.00035 1.2E-08 50.7 5.4 66 38-108 17-82 (102)
255 2yx1_A Hypothetical protein MJ 97.3 0.00021 7.3E-09 63.4 4.9 65 195-262 193-265 (336)
256 2oyr_A UPF0341 protein YHIQ; a 97.3 0.00021 7.2E-09 61.2 4.5 76 188-266 78-175 (258)
257 2heo_A Z-DNA binding protein 1 97.2 0.00026 9E-09 47.6 3.4 54 46-106 12-66 (67)
258 3jth_A Transcription activator 97.2 0.00027 9.4E-09 50.9 3.7 65 39-108 18-82 (98)
259 1qbj_A Protein (double-strande 97.2 0.00054 1.8E-08 47.9 5.0 64 44-112 10-76 (81)
260 3v97_A Ribosomal RNA large sub 97.2 0.0005 1.7E-08 67.1 6.5 77 185-262 179-310 (703)
261 1sqg_A SUN protein, FMU protei 97.2 0.00058 2E-08 62.6 6.5 71 190-261 240-321 (429)
262 1wg8_A Predicted S-adenosylmet 97.2 0.00065 2.2E-08 58.6 6.4 65 184-251 10-77 (285)
263 1u2w_A CADC repressor, cadmium 97.1 0.00047 1.6E-08 52.0 4.9 67 38-108 36-102 (122)
264 1ub9_A Hypothetical protein PH 97.1 0.00043 1.5E-08 49.7 4.0 69 39-111 11-82 (100)
265 3cuo_A Uncharacterized HTH-typ 97.1 0.00043 1.5E-08 49.6 3.9 66 40-109 20-85 (99)
266 4gqb_A Protein arginine N-meth 97.1 0.00058 2E-08 65.6 5.8 97 158-261 322-434 (637)
267 3opn_A Putative hemolysin; str 97.1 0.00038 1.3E-08 58.5 4.0 50 187-237 27-77 (232)
268 2okc_A Type I restriction enzy 97.1 0.00047 1.6E-08 63.6 5.0 77 187-264 162-262 (445)
269 3f6o_A Probable transcriptiona 97.1 0.00032 1.1E-08 52.5 3.2 67 38-109 12-78 (118)
270 3ll7_A Putative methyltransfer 97.1 0.00029 9.8E-09 64.3 3.4 65 195-261 91-169 (410)
271 2b78_A Hypothetical protein SM 97.1 0.0002 6.9E-09 64.8 2.4 65 196-261 211-291 (385)
272 1qgp_A Protein (double strande 97.0 0.00063 2.2E-08 47.1 4.2 58 45-107 15-75 (77)
273 2as0_A Hypothetical protein PH 97.0 0.00025 8.4E-09 64.4 2.6 64 197-261 217-295 (396)
274 3m6w_A RRNA methylase; rRNA me 97.0 0.00041 1.4E-08 64.4 4.0 66 195-261 99-176 (464)
275 2k4m_A TR8_protein, UPF0146 pr 97.0 0.00057 2E-08 53.1 4.2 59 195-263 33-97 (153)
276 3ech_A MEXR, multidrug resista 97.0 0.0038 1.3E-07 47.6 8.6 92 18-113 6-105 (142)
277 1wxx_A TT1595, hypothetical pr 96.9 0.00027 9.1E-09 63.9 2.1 63 197-261 209-285 (382)
278 2htj_A P fimbrial regulatory p 96.9 0.0013 4.5E-08 45.6 5.0 44 47-94 3-46 (81)
279 3df8_A Possible HXLR family tr 96.9 0.00092 3.2E-08 49.5 4.3 63 45-113 28-93 (111)
280 3bt7_A TRNA (uracil-5-)-methyl 96.9 0.00058 2E-08 61.4 3.7 52 198-251 214-272 (369)
281 3f6v_A Possible transcriptiona 96.9 0.00075 2.5E-08 53.0 3.8 70 36-110 50-119 (151)
282 2oqg_A Possible transcriptiona 96.8 0.00089 3.1E-08 49.3 4.0 64 42-110 19-82 (114)
283 2jsc_A Transcriptional regulat 96.8 0.00078 2.7E-08 50.4 3.6 66 38-108 15-80 (118)
284 1r1u_A CZRA, repressor protein 96.8 0.00092 3.1E-08 48.9 3.9 62 41-107 23-84 (106)
285 3c0k_A UPF0064 protein YCCW; P 96.8 0.00047 1.6E-08 62.5 2.5 66 196-262 219-300 (396)
286 3b5i_A S-adenosyl-L-methionine 96.8 0.0044 1.5E-07 55.8 8.6 72 198-269 53-164 (374)
287 2kko_A Possible transcriptiona 96.7 0.00047 1.6E-08 50.8 1.8 64 40-108 21-84 (108)
288 4auk_A Ribosomal RNA large sub 96.7 0.0016 5.5E-08 58.4 5.4 69 195-265 209-280 (375)
289 3v97_A Ribosomal RNA large sub 96.7 0.0011 3.8E-08 64.6 4.1 64 197-261 539-615 (703)
290 2b9e_A NOL1/NOP2/SUN domain fa 96.6 0.0036 1.2E-07 54.9 7.0 67 195-261 100-180 (309)
291 2frx_A Hypothetical protein YE 96.6 0.0026 8.8E-08 59.3 6.3 65 197-261 117-193 (479)
292 4dmg_A Putative uncharacterize 96.6 0.0015 5E-08 59.3 4.6 63 197-261 214-286 (393)
293 1tbx_A ORF F-93, hypothetical 96.6 0.0017 5.9E-08 46.6 4.0 64 46-113 10-77 (99)
294 3ua3_A Protein arginine N-meth 96.6 0.0029 9.8E-08 61.1 6.3 96 159-261 378-501 (745)
295 1on2_A Transcriptional regulat 96.6 0.003 1E-07 48.4 5.4 56 51-113 15-70 (142)
296 3tka_A Ribosomal RNA small sub 96.6 0.0051 1.8E-07 54.3 7.5 67 184-251 45-115 (347)
297 2hzt_A Putative HTH-type trans 96.6 0.0032 1.1E-07 46.1 5.3 62 47-113 17-82 (107)
298 1r1t_A Transcriptional repress 96.6 0.0019 6.6E-08 48.6 4.1 63 41-108 43-105 (122)
299 1r7j_A Conserved hypothetical 96.6 0.0032 1.1E-07 45.3 5.1 56 48-113 12-67 (95)
300 1oyi_A Double-stranded RNA-bin 96.6 0.0019 6.3E-08 45.1 3.6 60 44-109 17-76 (82)
301 3bdd_A Regulatory protein MARR 96.6 0.0058 2E-07 46.3 6.9 66 44-113 31-99 (142)
302 3mq0_A Transcriptional repress 96.5 0.0019 6.6E-08 55.6 4.5 57 47-110 33-90 (275)
303 2wte_A CSA3; antiviral protein 96.5 0.0028 9.4E-08 53.7 5.3 64 45-114 153-216 (244)
304 1xn7_A Hypothetical protein YH 96.5 0.0029 9.9E-08 43.8 4.2 43 49-95 7-49 (78)
305 2dul_A N(2),N(2)-dimethylguano 96.5 0.0032 1.1E-07 56.8 5.6 65 197-261 47-137 (378)
306 2ld4_A Anamorsin; methyltransf 96.4 0.0013 4.3E-08 52.2 2.5 58 195-268 10-76 (176)
307 2xyq_A Putative 2'-O-methyl tr 96.4 0.0043 1.5E-07 53.9 6.1 59 195-262 61-130 (290)
308 3m4x_A NOL1/NOP2/SUN family pr 96.4 0.0017 5.7E-08 60.1 3.6 67 195-261 103-181 (456)
309 2k02_A Ferrous iron transport 96.4 0.0027 9.2E-08 44.9 3.8 43 49-95 7-49 (87)
310 2nyx_A Probable transcriptiona 96.3 0.017 6E-07 45.3 8.7 66 44-113 45-113 (168)
311 2zkz_A Transcriptional repress 96.3 0.0021 7.1E-08 46.5 2.9 66 39-109 22-87 (99)
312 3g3z_A NMB1585, transcriptiona 96.3 0.0073 2.5E-07 46.1 6.0 66 44-113 31-99 (145)
313 4a5n_A Uncharacterized HTH-typ 96.3 0.0057 1.9E-07 46.7 5.2 76 24-113 15-94 (131)
314 2efj_A 3,7-dimethylxanthine me 96.2 0.0081 2.8E-07 54.2 6.9 72 198-269 53-163 (384)
315 2xrn_A HTH-type transcriptiona 96.2 0.0034 1.2E-07 52.9 4.1 60 47-112 9-69 (241)
316 1z7u_A Hypothetical protein EF 96.2 0.006 2E-07 45.0 4.8 60 49-113 27-90 (112)
317 1mkm_A ICLR transcriptional re 96.2 0.0059 2E-07 51.6 5.4 58 46-110 10-68 (249)
318 3kp7_A Transcriptional regulat 96.1 0.038 1.3E-06 42.3 9.4 64 45-113 39-107 (151)
319 2gxg_A 146AA long hypothetical 96.1 0.022 7.4E-07 43.3 7.8 65 44-113 37-104 (146)
320 3bja_A Transcriptional regulat 96.1 0.0078 2.7E-07 45.3 5.1 66 44-113 33-101 (139)
321 3k0l_A Repressor protein; heli 96.1 0.011 3.8E-07 46.1 6.2 66 44-113 46-114 (162)
322 1yyv_A Putative transcriptiona 96.1 0.0073 2.5E-07 46.0 4.9 63 46-113 37-103 (131)
323 1jgs_A Multiple antibiotic res 96.1 0.008 2.7E-07 45.3 5.1 65 45-113 35-102 (138)
324 2jt1_A PEFI protein; solution 96.0 0.005 1.7E-07 42.5 3.5 44 48-95 8-57 (77)
325 3bpv_A Transcriptional regulat 96.0 0.0075 2.6E-07 45.4 4.8 66 44-113 29-97 (138)
326 2qww_A Transcriptional regulat 96.0 0.025 8.4E-07 43.5 7.9 65 45-113 42-111 (154)
327 2fu4_A Ferric uptake regulatio 96.0 0.0051 1.7E-07 42.6 3.5 47 45-95 18-71 (83)
328 3nrv_A Putative transcriptiona 96.0 0.0088 3E-07 45.7 5.2 66 44-113 40-108 (148)
329 2fsw_A PG_0823 protein; alpha- 96.0 0.0064 2.2E-07 44.4 4.1 75 25-113 15-93 (107)
330 3axs_A Probable N(2),N(2)-dime 96.0 0.0036 1.2E-07 56.8 3.3 66 196-261 51-131 (392)
331 2f2e_A PA1607; transcription f 96.0 0.0083 2.8E-07 46.5 5.0 60 49-113 29-90 (146)
332 3r4k_A Transcriptional regulat 96.0 0.0026 8.7E-08 54.4 2.1 58 47-110 9-67 (260)
333 2nnn_A Probable transcriptiona 96.0 0.0071 2.4E-07 45.6 4.5 66 44-113 38-106 (140)
334 3oop_A LIN2960 protein; protei 96.0 0.0067 2.3E-07 46.2 4.3 66 44-113 37-105 (143)
335 2fa5_A Transcriptional regulat 95.9 0.018 6E-07 44.7 6.8 65 45-113 50-117 (162)
336 3f3x_A Transcriptional regulat 95.9 0.023 8E-07 43.1 7.3 65 44-113 37-104 (144)
337 2hr3_A Probable transcriptiona 95.9 0.014 4.8E-07 44.4 6.0 67 43-113 34-104 (147)
338 2rdp_A Putative transcriptiona 95.9 0.0097 3.3E-07 45.6 5.0 65 45-113 43-110 (150)
339 4hbl_A Transcriptional regulat 95.8 0.023 7.7E-07 43.6 6.9 66 44-113 41-109 (149)
340 1s3j_A YUSO protein; structura 95.8 0.034 1.2E-06 42.7 7.9 64 46-113 39-105 (155)
341 1lj9_A Transcriptional regulat 95.8 0.011 3.9E-07 44.8 5.0 65 45-113 30-97 (144)
342 3e6m_A MARR family transcripti 95.8 0.029 9.9E-07 43.6 7.5 65 45-113 54-121 (161)
343 3cdh_A Transcriptional regulat 95.8 0.012 4.1E-07 45.4 5.0 65 45-113 44-111 (155)
344 2h09_A Transcriptional regulat 95.7 0.02 7E-07 44.3 6.3 57 50-113 46-102 (155)
345 2y75_A HTH-type transcriptiona 95.7 0.012 4E-07 44.4 4.7 46 57-107 25-70 (129)
346 2fbh_A Transcriptional regulat 95.7 0.015 5.3E-07 44.0 5.4 65 45-113 38-106 (146)
347 2a61_A Transcriptional regulat 95.7 0.012 4.1E-07 44.7 4.6 66 44-113 33-101 (145)
348 2pg4_A Uncharacterized protein 95.7 0.011 3.8E-07 42.0 4.1 61 49-113 20-83 (95)
349 2lkp_A Transcriptional regulat 95.6 0.011 3.7E-07 43.8 4.2 48 43-95 31-78 (119)
350 3bj6_A Transcriptional regulat 95.6 0.015 5.1E-07 44.6 5.0 65 45-113 41-108 (152)
351 2g7u_A Transcriptional regulat 95.6 0.0079 2.7E-07 51.1 3.7 59 47-113 17-76 (257)
352 3hsr_A HTH-type transcriptiona 95.6 0.0068 2.3E-07 46.1 3.0 65 45-113 37-104 (140)
353 1bja_A Transcription regulator 95.6 0.016 5.5E-07 41.5 4.7 62 45-114 17-79 (95)
354 2eth_A Transcriptional regulat 95.6 0.016 5.5E-07 44.7 5.2 66 44-113 44-112 (154)
355 1m6e_X S-adenosyl-L-methionnin 95.6 0.015 5.1E-07 52.0 5.5 74 196-269 50-153 (359)
356 2fbi_A Probable transcriptiona 95.6 0.01 3.4E-07 44.9 3.9 66 44-113 36-104 (142)
357 3eco_A MEPR; mutlidrug efflux 95.5 0.014 4.8E-07 44.1 4.6 65 45-113 32-101 (139)
358 3cjn_A Transcriptional regulat 95.5 0.015 5.2E-07 45.2 4.8 66 44-113 52-120 (162)
359 2x4h_A Hypothetical protein SS 95.5 0.02 6.7E-07 43.5 5.3 50 56-113 29-78 (139)
360 3p8z_A Mtase, non-structural p 95.5 0.022 7.7E-07 47.7 5.9 78 183-261 65-150 (267)
361 3s2w_A Transcriptional regulat 95.5 0.014 4.6E-07 45.4 4.4 64 46-113 52-118 (159)
362 2bv6_A MGRA, HTH-type transcri 95.5 0.015 5E-07 44.1 4.4 66 44-113 37-105 (142)
363 2o0y_A Transcriptional regulat 95.4 0.0087 3E-07 51.0 3.4 57 47-110 26-83 (260)
364 3tgn_A ADC operon repressor AD 95.4 0.023 7.9E-07 43.2 5.5 65 44-113 38-105 (146)
365 2pex_A Transcriptional regulat 95.4 0.017 5.7E-07 44.5 4.7 66 45-114 48-116 (153)
366 3c6k_A Spermine synthase; sper 95.4 0.013 4.6E-07 52.6 4.6 54 197-251 205-273 (381)
367 1sfx_A Conserved hypothetical 95.3 0.016 5.6E-07 41.5 4.1 48 44-95 20-67 (109)
368 2ia2_A Putative transcriptiona 95.3 0.0079 2.7E-07 51.4 2.6 55 47-109 24-79 (265)
369 1i4w_A Mitochondrial replicati 95.2 0.047 1.6E-06 48.6 7.6 54 198-251 59-116 (353)
370 3bro_A Transcriptional regulat 95.2 0.026 9E-07 42.5 5.2 65 45-113 35-104 (141)
371 1z91_A Organic hydroperoxide r 95.2 0.012 4.1E-07 44.9 3.1 67 44-114 40-109 (147)
372 3lwf_A LIN1550 protein, putati 95.1 0.03 1E-06 44.1 5.5 63 37-107 26-88 (159)
373 3deu_A Transcriptional regulat 95.1 0.023 8E-07 44.6 4.8 66 44-113 53-122 (166)
374 2ar0_A M.ecoki, type I restric 95.1 0.02 6.7E-07 54.1 5.0 74 188-262 161-268 (541)
375 3khk_A Type I restriction-modi 95.1 0.0099 3.4E-07 56.2 2.9 75 186-262 235-336 (544)
376 2p4w_A Transcriptional regulat 95.1 0.024 8.2E-07 46.5 4.8 68 38-110 9-81 (202)
377 3jw4_A Transcriptional regulat 95.0 0.017 5.8E-07 44.2 3.7 65 45-113 42-111 (148)
378 2obp_A Putative DNA-binding pr 95.0 0.044 1.5E-06 39.3 5.5 53 57-113 35-88 (96)
379 2frh_A SARA, staphylococcal ac 95.0 0.017 5.9E-07 43.3 3.5 65 45-113 38-107 (127)
380 3boq_A Transcriptional regulat 94.9 0.038 1.3E-06 42.7 5.5 65 45-113 48-116 (160)
381 3lkd_A Type I restriction-modi 94.9 0.02 7E-07 54.0 4.5 66 197-262 221-304 (542)
382 3fm5_A Transcriptional regulat 94.9 0.027 9.4E-07 43.1 4.5 66 44-113 39-108 (150)
383 3u2r_A Regulatory protein MARR 94.9 0.059 2E-06 42.1 6.5 66 44-113 46-116 (168)
384 1p6r_A Penicillinase repressor 94.8 0.019 6.6E-07 39.5 3.1 51 45-95 10-60 (82)
385 2px2_A Genome polyprotein [con 94.8 0.014 4.6E-07 49.6 2.7 76 183-261 60-145 (269)
386 2qvo_A Uncharacterized protein 94.8 0.023 7.8E-07 40.4 3.5 51 59-113 31-81 (95)
387 3hrs_A Metalloregulator SCAR; 94.7 0.03 1E-06 46.2 4.6 51 56-113 18-68 (214)
388 3s1s_A Restriction endonucleas 94.7 0.028 9.7E-07 55.2 5.0 67 195-261 319-405 (878)
389 3nqo_A MARR-family transcripti 94.6 0.037 1.3E-06 44.5 4.8 69 43-115 40-113 (189)
390 2w25_A Probable transcriptiona 94.6 0.038 1.3E-06 42.6 4.7 46 45-94 8-53 (150)
391 2cfx_A HTH-type transcriptiona 94.6 0.04 1.4E-06 42.3 4.7 46 45-94 6-51 (144)
392 2pn6_A ST1022, 150AA long hypo 94.5 0.032 1.1E-06 43.0 4.1 46 45-94 4-49 (150)
393 3t8r_A Staphylococcus aureus C 94.5 0.051 1.7E-06 41.9 5.2 46 57-107 27-72 (143)
394 2lnb_A Z-DNA-binding protein 1 94.5 0.039 1.3E-06 37.5 3.9 55 45-106 20-75 (80)
395 1ylf_A RRF2 family protein; st 94.5 0.044 1.5E-06 42.4 4.8 62 37-108 13-74 (149)
396 3r0a_A Putative transcriptiona 94.4 0.03 1E-06 42.0 3.6 46 45-94 27-74 (123)
397 3u1d_A Uncharacterized protein 94.3 0.062 2.1E-06 41.8 5.3 84 45-144 30-124 (151)
398 2p5v_A Transcriptional regulat 94.3 0.049 1.7E-06 42.7 4.7 46 45-94 11-56 (162)
399 4g6q_A Putative uncharacterize 94.2 0.018 6.1E-07 46.4 2.0 68 38-110 17-90 (182)
400 1q1h_A TFE, transcription fact 94.2 0.04 1.4E-06 40.1 3.8 46 45-94 19-65 (110)
401 4aik_A Transcriptional regulat 94.1 0.092 3.1E-06 40.5 5.9 64 46-113 33-100 (151)
402 2fxa_A Protease production reg 94.1 0.032 1.1E-06 45.7 3.4 66 45-114 49-117 (207)
403 2qlz_A Transcription factor PF 94.0 0.011 3.8E-07 49.6 0.4 68 38-110 6-79 (232)
404 2cyy_A Putative HTH-type trans 94.0 0.043 1.5E-06 42.4 3.8 46 45-94 8-53 (151)
405 2cg4_A Regulatory protein ASNC 93.9 0.053 1.8E-06 41.9 4.1 46 45-94 9-54 (152)
406 1okr_A MECI, methicillin resis 93.8 0.031 1.1E-06 41.4 2.6 66 45-112 11-79 (123)
407 2e1c_A Putative HTH-type trans 93.8 0.059 2E-06 42.8 4.3 47 44-94 27-73 (171)
408 1uly_A Hypothetical protein PH 93.8 0.072 2.5E-06 43.2 4.9 52 39-95 15-66 (192)
409 2ia0_A Putative HTH-type trans 93.8 0.071 2.4E-06 42.3 4.7 46 45-94 18-63 (171)
410 3i4p_A Transcriptional regulat 93.7 0.056 1.9E-06 42.4 4.0 46 45-94 4-49 (162)
411 2dbb_A Putative HTH-type trans 93.7 0.061 2.1E-06 41.5 4.2 46 45-94 10-55 (151)
412 3k69_A Putative transcription 93.6 0.073 2.5E-06 41.9 4.5 47 57-108 27-73 (162)
413 4b8x_A SCO5413, possible MARR- 93.6 0.047 1.6E-06 42.0 3.4 63 47-113 38-105 (147)
414 2zig_A TTHA0409, putative modi 93.6 0.085 2.9E-06 45.6 5.4 50 185-238 225-275 (297)
415 2k4b_A Transcriptional regulat 93.6 0.035 1.2E-06 40.1 2.5 51 45-95 36-86 (99)
416 1i1g_A Transcriptional regulat 93.6 0.056 1.9E-06 41.1 3.8 45 46-94 6-50 (141)
417 2d1h_A ST1889, 109AA long hypo 93.6 0.064 2.2E-06 38.3 3.9 36 56-95 34-69 (109)
418 3cta_A Riboflavin kinase; stru 93.5 0.066 2.3E-06 44.5 4.2 54 57-114 26-79 (230)
419 2fbk_A Transcriptional regulat 93.2 0.045 1.5E-06 43.5 2.7 65 45-113 70-140 (181)
420 1rjd_A PPM1P, carboxy methyl t 93.2 0.12 4.2E-06 45.5 5.8 76 196-271 96-210 (334)
421 3gcz_A Polyprotein; flavivirus 93.2 0.078 2.7E-06 45.5 4.3 46 183-229 77-122 (282)
422 3evf_A RNA-directed RNA polyme 93.1 0.22 7.6E-06 42.6 7.0 81 185-266 63-151 (277)
423 3lkz_A Non-structural protein 92.8 0.091 3.1E-06 45.4 4.2 77 184-261 82-166 (321)
424 1hsj_A Fusion protein consisti 92.8 0.054 1.8E-06 49.9 3.0 66 44-113 404-474 (487)
425 4esf_A PADR-like transcription 92.7 0.57 1.9E-05 34.6 8.0 70 39-113 6-86 (117)
426 1xd7_A YWNA; structural genomi 92.7 0.11 3.7E-06 40.0 4.1 60 37-108 8-67 (145)
427 2esh_A Conserved hypothetical 92.6 0.29 9.9E-06 36.1 6.3 68 41-113 10-90 (118)
428 2qy6_A UPF0209 protein YFCK; s 92.4 0.13 4.5E-06 43.6 4.6 33 197-229 60-104 (257)
429 1ku9_A Hypothetical protein MJ 92.3 0.097 3.3E-06 39.6 3.4 45 47-95 29-74 (152)
430 4fx0_A Probable transcriptiona 92.3 0.13 4.4E-06 39.5 4.1 63 46-113 35-105 (148)
431 2o03_A Probable zinc uptake re 91.9 0.17 5.9E-06 38.1 4.4 51 42-96 9-65 (131)
432 2fe3_A Peroxide operon regulat 91.8 0.25 8.5E-06 37.9 5.3 60 43-106 21-87 (145)
433 3k2z_A LEXA repressor; winged 91.8 0.17 6E-06 40.8 4.5 40 52-95 17-57 (196)
434 1sfu_A 34L protein; protein/Z- 91.6 0.16 5.4E-06 34.5 3.3 53 49-106 20-72 (75)
435 2qlz_A Transcription factor PF 91.1 0.43 1.5E-05 39.8 6.4 54 46-107 167-220 (232)
436 2dk5_A DNA-directed RNA polyme 91.0 0.17 5.6E-06 35.9 3.2 45 46-94 22-68 (91)
437 3f8b_A Transcriptional regulat 91.0 0.6 2E-05 34.3 6.4 71 38-113 6-89 (116)
438 3l7w_A Putative uncharacterize 90.7 0.26 9E-06 35.7 4.2 66 43-113 8-81 (108)
439 3hhh_A Transcriptional regulat 90.6 0.85 2.9E-05 33.5 7.0 71 38-113 7-88 (116)
440 1j5y_A Transcriptional regulat 90.4 0.3 1E-05 39.1 4.7 58 43-108 20-79 (187)
441 2g9w_A Conserved hypothetical 90.4 0.27 9.3E-06 37.2 4.2 51 45-95 10-61 (138)
442 3eyi_A Z-DNA-binding protein 1 90.4 0.3 1E-05 32.4 3.7 46 46-95 12-58 (72)
443 2vn2_A DNAD, chromosome replic 90.3 0.26 9E-06 37.0 3.9 33 58-94 51-83 (128)
444 1sd4_A Penicillinase repressor 90.2 0.16 5.5E-06 37.5 2.7 51 45-95 11-61 (126)
445 1xma_A Predicted transcription 89.9 0.3 1E-05 37.6 4.0 68 41-113 38-118 (145)
446 1fx7_A Iron-dependent represso 89.8 0.29 9.8E-06 40.6 4.2 47 60-113 26-72 (230)
447 1p4x_A Staphylococcal accessor 89.7 0.32 1.1E-05 41.0 4.4 65 45-113 159-228 (250)
448 1zkd_A DUF185; NESG, RPR58, st 89.7 1.6 5.3E-05 39.3 9.1 69 195-265 78-158 (387)
449 1v4r_A Transcriptional repress 89.5 0.19 6.4E-06 36.0 2.5 53 39-95 14-68 (102)
450 2vxz_A Pyrsv_GP04; viral prote 89.4 0.37 1.3E-05 37.1 4.0 45 46-95 13-57 (165)
451 3elk_A Putative transcriptiona 89.4 0.37 1.3E-05 35.6 4.1 71 38-113 8-89 (117)
452 2qq9_A Diphtheria toxin repres 89.3 0.7 2.4E-05 38.1 6.2 50 58-114 24-73 (226)
453 1yg2_A Gene activator APHA; vi 89.3 0.58 2E-05 37.1 5.5 63 45-112 3-78 (179)
454 3mwm_A ZUR, putative metal upt 89.1 0.47 1.6E-05 36.1 4.6 66 42-107 12-80 (139)
455 2xvc_A ESCRT-III, SSO0910; cel 89.0 0.34 1.2E-05 30.8 3.0 45 46-94 12-57 (59)
456 2xig_A Ferric uptake regulatio 88.9 0.52 1.8E-05 36.3 4.8 60 43-106 26-92 (150)
457 3eld_A Methyltransferase; flav 88.4 0.49 1.7E-05 40.9 4.6 44 185-229 70-113 (300)
458 1mzb_A Ferric uptake regulatio 88.3 0.51 1.7E-05 35.7 4.3 60 43-106 17-84 (136)
459 2wk1_A NOVP; transferase, O-me 88.3 1.6 5.3E-05 37.5 7.9 34 196-229 105-143 (282)
460 1bia_A BIRA bifunctional prote 88.3 0.43 1.5E-05 41.7 4.4 56 46-107 7-62 (321)
461 3i71_A Ethanolamine utilizatio 88.0 1.1 3.8E-05 28.5 4.9 43 58-108 18-60 (68)
462 2hoe_A N-acetylglucosamine kin 87.9 0.31 1.1E-05 43.5 3.3 69 37-110 13-87 (380)
463 2o0m_A Transcriptional regulat 87.8 0.1 3.5E-06 46.2 0.0 62 45-114 21-82 (345)
464 1jhg_A Trp operon repressor; c 87.4 0.77 2.6E-05 33.0 4.5 41 43-88 44-84 (101)
465 1z6r_A MLC protein; transcript 87.2 0.6 2E-05 41.9 4.8 51 41-95 13-63 (406)
466 2p8t_A Hypothetical protein PH 87.1 0.75 2.6E-05 37.4 4.8 49 57-113 29-77 (200)
467 1z05_A Transcriptional regulat 86.4 0.68 2.3E-05 42.0 4.7 51 41-95 36-86 (429)
468 1g60_A Adenine-specific methyl 85.7 1.2 3.9E-05 37.5 5.5 50 184-237 201-251 (260)
469 3cvo_A Methyltransferase-like 85.6 1.8 6.2E-05 35.1 6.4 53 195-250 28-90 (202)
470 2p5k_A Arginine repressor; DNA 85.2 1.3 4.3E-05 28.3 4.4 37 49-92 10-51 (64)
471 2py6_A Methyltransferase FKBM; 84.8 1.4 4.8E-05 39.8 5.9 41 196-236 225-268 (409)
472 4esb_A Transcriptional regulat 84.7 0.95 3.2E-05 33.2 4.0 64 45-113 10-84 (115)
473 3lmm_A Uncharacterized protein 84.7 1 3.4E-05 42.8 5.1 61 46-114 432-497 (583)
474 2v79_A DNA replication protein 84.2 0.66 2.3E-05 35.2 2.9 33 58-94 51-83 (135)
475 3eyy_A Putative iron uptake re 83.6 0.71 2.4E-05 35.4 2.9 64 43-106 18-83 (145)
476 2uyo_A Hypothetical protein ML 83.2 1.8 6E-05 37.6 5.7 74 196-271 101-195 (310)
477 3maj_A DNA processing chain A; 83.2 0.7 2.4E-05 41.4 3.1 53 46-106 330-382 (382)
478 3cuq_B Vacuolar protein-sortin 82.9 2.1 7.3E-05 35.2 5.8 39 54-96 164-202 (218)
479 1p4x_A Staphylococcal accessor 82.8 1.2 4.1E-05 37.5 4.3 65 45-113 35-104 (250)
480 2w57_A Ferric uptake regulatio 82.7 0.74 2.5E-05 35.5 2.8 64 43-106 16-83 (150)
481 2b0l_A GTP-sensing transcripti 82.5 0.63 2.2E-05 33.4 2.2 44 48-95 32-76 (102)
482 3ri2_A Transcriptional regulat 82.2 2.5 8.7E-05 31.3 5.5 72 36-113 13-93 (123)
483 2w48_A Sorbitol operon regulat 81.7 1.5 5.1E-05 38.0 4.7 39 52-94 15-54 (315)
484 3eqx_A FIC domain containing t 81.5 1.6 5.4E-05 39.0 4.8 64 49-116 302-365 (373)
485 3ufb_A Type I restriction-modi 81.0 1.9 6.5E-05 40.3 5.4 65 186-251 207-291 (530)
486 2pjp_A Selenocysteine-specific 81.0 1 3.5E-05 33.3 2.9 51 48-106 11-61 (121)
487 2yu3_A DNA-directed RNA polyme 80.2 1 3.5E-05 32.0 2.5 47 45-95 38-86 (95)
488 3qph_A TRMB, A global transcri 80.1 0.13 4.4E-06 45.6 -2.8 61 43-108 17-77 (342)
489 3lmm_A Uncharacterized protein 79.4 0.38 1.3E-05 45.7 0.0 58 47-108 519-576 (583)
490 3kor_A Possible Trp repressor; 79.3 4.4 0.00015 29.9 5.7 40 42-87 61-100 (119)
491 2qc0_A Uncharacterized protein 77.4 2.3 7.7E-05 37.9 4.5 64 48-115 301-364 (373)
492 3tqn_A Transcriptional regulat 76.7 3.8 0.00013 29.6 4.9 32 60-95 35-66 (113)
493 3rkx_A Biotin-[acetyl-COA-carb 76.0 2.1 7.2E-05 37.4 3.8 56 46-107 5-62 (323)
494 2k9l_A RNA polymerase sigma fa 75.7 3.1 0.00011 28.0 3.8 38 48-89 36-75 (76)
495 3e97_A Transcriptional regulat 74.7 3.6 0.00012 33.0 4.8 42 58-107 175-216 (231)
496 3dv8_A Transcriptional regulat 74.5 3.2 0.00011 33.0 4.3 42 58-107 169-210 (220)
497 1tc3_C Protein (TC3 transposas 74.2 3.2 0.00011 24.2 3.3 29 58-90 21-49 (51)
498 3neu_A LIN1836 protein; struct 74.1 3.5 0.00012 30.5 4.1 41 58-104 36-77 (125)
499 1lva_A Selenocysteine-specific 73.9 4.8 0.00016 33.7 5.4 57 43-106 140-198 (258)
500 3mag_A VP39; methylated adenin 73.8 2 7E-05 36.9 3.0 53 197-251 60-117 (307)
No 1
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=100.00 E-value=1.3e-45 Score=334.64 Aligned_cols=246 Identities=23% Similarity=0.374 Sum_probs=218.3
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhC-CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCC
Q 024046 21 EEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGG 99 (273)
Q Consensus 21 ~~~~~~~l~~~~~g~~~~~aL~~a~elglfd~L~~~-g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~ 99 (273)
..++++.|+++++||+.+++|++|+||||||.|.+. ||+|++|||+.+|+ +++.++|+||+|++.|++++....+
T Consensus 5 e~~~~~~L~~l~~Gf~~s~~L~aa~eLglfd~L~~~~~p~t~~eLA~~~g~----~~~~l~rlLr~L~~~gll~~~~~~~ 80 (353)
T 4a6d_A 5 EDQAYRLLNDYANGFMVSQVLFAACELGVFDLLAEAPGPLDVAAVAAGVRA----SAHGTELLLDICVSLKLLKVETRGG 80 (353)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHSSSCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEETT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHhcCCCCCCHHHHHHhhCc----CHHHHHHHHHHHHHCCCEEEeccCc
Confidence 347889999999999999999999999999999874 49999999999999 9999999999999999998642234
Q ss_pred CcceecChhchHhhcCCCCCccchhhcccCChhHHHHhhhHHHHHhcCCCcchhccC---CchhhhhhcCcchHHHHHHH
Q 024046 100 ERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWLGLKDAVMEGGIPFNRVHG---MHIFEYASGNPRFNETYHEA 176 (273)
Q Consensus 100 ~~~y~lt~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~e~l~~g~~~~~~~~g---~~~~~~~~~~~~~~~~f~~a 176 (273)
.+.|++|+.++.++....+.+++.++.+. .+..+..|..|+++++++++++...+| .++|+++..+++....|+.+
T Consensus 81 ~~~y~~t~~s~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~vr~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~a 159 (353)
T 4a6d_A 81 KAFYRNTELSSDYLTTVSPTSQCSMLKYM-GRTSYRCWGHLADAVREGRNQYLETFGVPAEELFTAIYRSEGERLQFMQA 159 (353)
T ss_dssp EEEEEECHHHHHHHSTTSTTCCHHHHHHH-HHTHHHHHTTHHHHHHHTSCCHHHHHSCCCSSHHHHHTSSHHHHHHHHHH
T ss_pred cceeeCCHHHHHHhhcCCchHHHHHHHHh-CHHHHHHHHHHHHHHhcCCChhHHhcCCChHHHHHHHhhCHHHHHHHHHH
Confidence 56899999998776666556788887764 355778999999999999999988887 46899999999999999999
Q ss_pred HHhcchhhHHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhCCC------CCCceEEEcccC
Q 024046 177 MFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS------YAGVEHVGGNMF 250 (273)
Q Consensus 177 m~~~~~~~~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~------~~ri~~~~gD~f 250 (273)
|...+...++.+++.++ |++..+|||||||+|.++..++++||+++++++|+|+|++.|++ .+||++++||||
T Consensus 160 M~~~~~~~~~~~~~~~~-~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~~~rv~~~~gD~~ 238 (353)
T 4a6d_A 160 LQEVWSVNGRSVLTAFD-LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQIDFQEGDFF 238 (353)
T ss_dssp HHTTHHHHHHHHHHSSC-GGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC--CCSEEEEESCTT
T ss_pred HHHHHHHHHHHHHHhcC-cccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcccCceeeecCccc
Confidence 99998888889999998 99999999999999999999999999999999999999998764 289999999999
Q ss_pred CC-CCCCCEEEecccccccCCCC
Q 024046 251 ES-VPEGDAILMKVGNFENYQSH 272 (273)
Q Consensus 251 ~~-~p~~D~~~l~~vLHd~~~~~ 272 (273)
++ .|.+|+|++++|||||+|++
T Consensus 239 ~~~~~~~D~~~~~~vlh~~~d~~ 261 (353)
T 4a6d_A 239 KDPLPEADLYILARVLHDWADGK 261 (353)
T ss_dssp TSCCCCCSEEEEESSGGGSCHHH
T ss_pred cCCCCCceEEEeeeecccCCHHH
Confidence 85 55679999999999999874
No 2
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=100.00 E-value=3.4e-44 Score=326.67 Aligned_cols=256 Identities=48% Similarity=0.842 Sum_probs=227.1
Q ss_pred chhhhhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhC--CCCCHHHHHHHhCc-CCCCCcchHHHHHHHHhcCCcee
Q 024046 17 EEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKA--GELSAPEIAAQLQA-QNVKAPMMLDRMLRLLVSHRVLE 93 (273)
Q Consensus 17 ~~~~~~~~~~~l~~~~~g~~~~~aL~~a~elglfd~L~~~--g~~t~~eLA~~~g~-~~~~~~~~l~rlL~~L~~~gll~ 93 (273)
.+.|+.+++..++++++|++.+++|++|++||||++|.+. +|+|++|||+++|+ +++.++..++|+||+|++.|+|+
T Consensus 13 ~~~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lgifd~L~~~g~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~g~l~ 92 (364)
T 3p9c_A 13 AASADEDACMFALQLASSSVLPMTLKNAIELGLLEILVAAGGKSLTPTEVAAKLPSAANPEAPDMVDRILRLLASYNVVT 92 (364)
T ss_dssp CHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTHHHHHHHTTTCCBCHHHHHHTTTCTTCTTHHHHHHHHHHHHHHTTSEE
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHCChHHHHhhcCCCCCCHHHHHHhcCCCCCccchhhHHHHHHHHHhCCCEE
Confidence 5667889999999999999999999999999999999985 49999999999994 21112338999999999999999
Q ss_pred cccc---CC--CcceecChhchHhhcCCCCCccchhhcccCChhHHHHhhhHHHHHhcCCCcchhccCCchhhhhhcCcc
Q 024046 94 CSVS---GG--ERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPR 168 (273)
Q Consensus 94 ~~~~---~~--~~~y~lt~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~e~l~~g~~~~~~~~g~~~~~~~~~~~~ 168 (273)
+... .+ ++.|++|+.++.|+.+.++.++++++.+.+++.++..|.+|++++++|+++|+..+|.++|+|+..+|+
T Consensus 93 ~~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~r~g~~~~~~~~g~~~~~~~~~~~~ 172 (364)
T 3p9c_A 93 CLVEEGKDGRLSRSYGAAPVCKFLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGGIPFNKAYGMSAFEYHGTDPR 172 (364)
T ss_dssp EEEEECSSSCEEEEEEECGGGGGSSCCTTSCCTHHHHHHHTSHHHHGGGGGHHHHHHHCSCHHHHHHSSCHHHHHTTCHH
T ss_pred EeccccCCCCcCCEEecCHHHHHHcCCCCCCCHHHHHHHhcCHHHHHHHhCHHHHHhhCCChHHHhcCCCHHHHHHhCHH
Confidence 8410 01 468999999998887765568888887666777889999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcchhhHHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhCCCCCCceEEEcc
Q 024046 169 FNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGN 248 (273)
Q Consensus 169 ~~~~f~~am~~~~~~~~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~~~ri~~~~gD 248 (273)
..+.|+.+|...+....+.+++.++.+++..+|||||||+|.++..+++++|+++++++|+|.+++.|+..+||+++.+|
T Consensus 173 ~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D 252 (364)
T 3p9c_A 173 FNRVFNEGMKNHSIIITKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQFPGVTHVGGD 252 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECC
T ss_pred HHHHHHHHHHHhhHHHHHHHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHhhhhcCCeEEEeCC
Confidence 99999999999888777888888876788899999999999999999999999999999999999999988999999999
Q ss_pred cCCCCCCCCEEEecccccccCCCC
Q 024046 249 MFESVPEGDAILMKVGNFENYQSH 272 (273)
Q Consensus 249 ~f~~~p~~D~~~l~~vLHd~~~~~ 272 (273)
+|+++|.+|+|+++++||+|+|++
T Consensus 253 ~~~~~p~~D~v~~~~vlh~~~d~~ 276 (364)
T 3p9c_A 253 MFKEVPSGDTILMKWILHDWSDQH 276 (364)
T ss_dssp TTTCCCCCSEEEEESCGGGSCHHH
T ss_pred cCCCCCCCCEEEehHHhccCCHHH
Confidence 999999889999999999998763
No 3
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*
Probab=100.00 E-value=7e-44 Score=325.03 Aligned_cols=269 Identities=51% Similarity=0.841 Sum_probs=224.3
Q ss_pred CCchhHHHHhhccCCCchhhhhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhC-C---CCCHHHHHHHhCcCCCCCc
Q 024046 1 MGSLSEYQKLAQKKHEEEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKA-G---ELSAPEIAAQLQAQNVKAP 76 (273)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~aL~~a~elglfd~L~~~-g---~~t~~eLA~~~g~~~~~~~ 76 (273)
|||.++-+-. ... .+.+..+++..+++++.|++.+++|++|++|||||.|.+. | |+|++|||+++|..++.++
T Consensus 1 ~~~~~~~~~~--~~~-~~~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lglfd~L~~~~gp~~~~t~~eLA~~~~~~~~~~~ 77 (368)
T 3reo_A 1 MGSTGNAEIQ--IIP-THSSDEEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLPTTNPEAP 77 (368)
T ss_dssp -------------------CHHHHHHHHHHHHTTTHHHHHHHHHHHTTHHHHHHHHCCTTCCBCHHHHHTTSSCCCTTHH
T ss_pred CCCccccccc--ccC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCchhHHhhcCCCCCCcCHHHHHHhcCcCCCcch
Confidence 7887766432 122 4446788899999999999999999999999999999984 4 6999999999983122223
Q ss_pred chHHHHHHHHhcCCceecccc---CC--CcceecChhchHhhcCCCCCccchhhcccCChhHHHHhhhHHHHHhcCCCcc
Q 024046 77 MMLDRMLRLLVSHRVLECSVS---GG--ERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWLGLKDAVMEGGIPF 151 (273)
Q Consensus 77 ~~l~rlL~~L~~~gll~~~~~---~~--~~~y~lt~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~e~l~~g~~~~ 151 (273)
+.++|+||+|++.|+|++... .+ ++.|++|+.++.|+.+.++.+++.++.+.+++.++..|.+|++++++|+++|
T Consensus 78 ~~l~rlLr~L~~~gll~~~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~g~~~~ 157 (368)
T 3reo_A 78 VMLDRVLRLLASYSVVTYTLRELPSGKVERLYGLAPVCKFLTKNEDGVSLAPFLLLATDKVLLEPWFYLKDAILEGGIPF 157 (368)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECTTHHHHSCCTTSCCSHHHHHHHTCHHHHGGGGGHHHHHHHCSCHH
T ss_pred hhHHHHHHHHHhCCCeEEecccCCCCcccceeCcCHHHHHHhCCCCCCCHHHHHHHhcCHHHHhhhhchHHHHhcCCCHH
Confidence 499999999999999997410 01 3689999999998877666788888877667778889999999999999999
Q ss_pred hhccCCchhhhhhcCcchHHHHHHHHHhcchhhHHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeechH
Q 024046 152 NRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPH 231 (273)
Q Consensus 152 ~~~~g~~~~~~~~~~~~~~~~f~~am~~~~~~~~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~ 231 (273)
+..+|.++|+|+..+|+..+.|+.+|...+....+.+++.++.+++..+|||||||+|.++..+++++|+++++++|+|.
T Consensus 158 ~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~ 237 (368)
T 3reo_A 158 NKAYGMNIFDYHGTDHRINKVFNKGMSSNSTITMKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPH 237 (368)
T ss_dssp HHHSSSCHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHH
T ss_pred HHHhCCCHHHHHhhCHHHHHHHHHHHHhhhhhHHHHHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHH
Confidence 99999999999999999999999999998887778888888667888999999999999999999999999999999999
Q ss_pred HHHhCCCCCCceEEEcccCCCCCCCCEEEecccccccCCCC
Q 024046 232 VVQDAPSYAGVEHVGGNMFESVPEGDAILMKVGNFENYQSH 272 (273)
Q Consensus 232 v~~~a~~~~ri~~~~gD~f~~~p~~D~~~l~~vLHd~~~~~ 272 (273)
+++.++..+||+++.||+++++|.+|+|+++++||+|++++
T Consensus 238 ~~~~a~~~~~v~~~~~d~~~~~p~~D~v~~~~vlh~~~~~~ 278 (368)
T 3reo_A 238 VIQDAPAFSGVEHLGGDMFDGVPKGDAIFIKWICHDWSDEH 278 (368)
T ss_dssp HHTTCCCCTTEEEEECCTTTCCCCCSEEEEESCGGGBCHHH
T ss_pred HHHhhhhcCCCEEEecCCCCCCCCCCEEEEechhhcCCHHH
Confidence 99999988999999999999999889999999999999763
No 4
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=100.00 E-value=2.2e-40 Score=299.58 Aligned_cols=240 Identities=22% Similarity=0.243 Sum_probs=216.6
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCC
Q 024046 21 EEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE 100 (273)
Q Consensus 21 ~~~~~~~l~~~~~g~~~~~aL~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~ 100 (273)
..++..+++++++|++.+++|++|+++|||++|.+ ||.|++|||+++|+ +++.++|+||+|++.|+|++ ++
T Consensus 19 ~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~l~~-g~~t~~elA~~~g~----~~~~l~rlLr~l~~~g~l~~----~~ 89 (348)
T 3lst_A 19 RLQSALALYEEAMGYTYAAALRAAAAVGVADHLVD-GPRTPAELAAATGT----DADALRRVLRLLAVRDVVRE----SD 89 (348)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHTGGGGGTT-SCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE----ET
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhC-CCCCHHHHHHHhCc----CHHHHHHHHHHHHhCCCEEe----cC
Confidence 45788899999999999999999999999999987 79999999999999 99999999999999999997 46
Q ss_pred cceecChhchHhhcCCCCCccchhhcccCChhHHHHhhhHHHHHhcCCCcchhccCCchhhhhhcCcchHHHHHHHHHhc
Q 024046 101 RLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNH 180 (273)
Q Consensus 101 ~~y~lt~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~e~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~am~~~ 180 (273)
+.|++|+.++.|..+.+ .++++++.+..++..+..|.+|++++++|+++|+..+|.++|+|+..+|+..+.|..+|...
T Consensus 90 ~~y~~t~~s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~ 168 (348)
T 3lst_A 90 GRFALTDKGAALRSDSP-VPARAGILMFTDTMFWTMSHRVASALGPERPAFADIFGSSLDAYFDGDAEVEALYYEGMETV 168 (348)
T ss_dssp TEEEECTTTGGGSTTSS-SCSHHHHHHHTSHHHHHHHHTHHHHTCTTCCCHHHHHSSCHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CEEecCHHHHHHhcCCC-ccHHHHHHHhcCHHHHHHHHHHHHHHhcCCChhhHHhCCCHHHHHHhCHHHHHHHHHHHHHh
Confidence 89999999998865543 56788776655666789999999999999999999999899999999999999999999998
Q ss_pred chhhHHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhCCC-----CCCceEEEcccCCCCCC
Q 024046 181 STIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS-----YAGVEHVGGNMFESVPE 255 (273)
Q Consensus 181 ~~~~~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~-----~~ri~~~~gD~f~~~p~ 255 (273)
+....+.+++.++ +++..+|||||||+|.++..+++++|+++++++|+|.++..++. .+||+++.+|++.++|.
T Consensus 169 ~~~~~~~~~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~p~ 247 (348)
T 3lst_A 169 SAAEHLILARAGD-FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVEGDFLREVPH 247 (348)
T ss_dssp HHTTHHHHHHHSC-CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHTTCCCCCGGGTTSEEEEECCTTTCCCC
T ss_pred hhhhHHHHHHhCC-ccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhhcccccccCCCCCeEEEecCCCCCCCC
Confidence 8887888999998 98999999999999999999999999999999999998873321 26899999999988995
Q ss_pred CCEEEecccccccCCC
Q 024046 256 GDAILMKVGNFENYQS 271 (273)
Q Consensus 256 ~D~~~l~~vLHd~~~~ 271 (273)
.|+|+++++||+|+|+
T Consensus 248 ~D~v~~~~vlh~~~d~ 263 (348)
T 3lst_A 248 ADVHVLKRILHNWGDE 263 (348)
T ss_dssp CSEEEEESCGGGSCHH
T ss_pred CcEEEEehhccCCCHH
Confidence 5999999999999986
No 5
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=100.00 E-value=3.5e-40 Score=299.29 Aligned_cols=251 Identities=26% Similarity=0.430 Sum_probs=219.7
Q ss_pred hhhhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhC-CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecccc
Q 024046 19 EEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVS 97 (273)
Q Consensus 19 ~~~~~~~~~l~~~~~g~~~~~aL~~a~elglfd~L~~~-g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~ 97 (273)
+++.++...+++++.|++.+++|++|+++|||++|... ||+|++|||+.+|+ ++.+++.++|+||+|++.|+|++...
T Consensus 5 ~~~~~~~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~~~~t~~eLA~~~g~-~~~~~~~l~rlLr~L~~~gll~~~~~ 83 (358)
T 1zg3_A 5 SELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKL-HPSKVNILHRFLRLLTHNGFFAKTIV 83 (358)
T ss_dssp SCCTTHHHHHHHHHTTHHHHHHHHHHHHHTHHHHHHHHTSCEEHHHHHHHTTC-CTTTHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHCChHhHHhhcCCCcCHHHHHHhcCC-CCcchHHHHHHHHHHhhCCcEEEecc
Confidence 46778889999999999999999999999999999975 39999999999999 33358899999999999999997400
Q ss_pred --CC-----CcceecChhchHhhcCCCCCccchhhcccCChhHHHHhhhHHHHHhcC--CCcchhccCCchhhhhhcCcc
Q 024046 98 --GG-----ERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWLGLKDAVMEG--GIPFNRVHGMHIFEYASGNPR 168 (273)
Q Consensus 98 --~~-----~~~y~lt~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~e~l~~g--~~~~~~~~g~~~~~~~~~~~~ 168 (273)
.+ ++.|++|+.++.|+.+.+ .+++.++.+..++.++..|.+|+++++++ +++|+..+|.++|+|+..+|+
T Consensus 84 ~~~~~~g~~~~~y~~t~~s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~~g~~~~~~~~~~p~ 162 (358)
T 1zg3_A 84 KGKEGDEEEEIAYSLTPPSKLLISGKP-TCLSSIVKGALHPSSLDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDSE 162 (358)
T ss_dssp CCSSSSCCCEEEEEECHHHHTTCTTST-TCCHHHHHHHTSHHHHGGGGGHHHHHHCSCCCCHHHHHHSSCHHHHHTSGGG
T ss_pred cccccCCCCCCEEeCCHHHHHHhCCCC-ccHHHHHHHhcCcHHHHHHHHHHHHHhCCCCCChHHHHhCCCHHHHHhcChh
Confidence 01 479999999998876654 57888887766677788999999999998 678888889899999999999
Q ss_pred hHH--HHHHHHHhcchhhHHHHHhhcc-cCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhCCCCCCceEE
Q 024046 169 FNE--TYHEAMFNHSTIAMERILEHYE-GFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHV 245 (273)
Q Consensus 169 ~~~--~f~~am~~~~~~~~~~il~~~~-~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~~~ri~~~ 245 (273)
..+ .|+.+|...+.... .+++.++ .+++..+|||||||+|.++..+++++|+++++++|+|.+++.++..++|+++
T Consensus 163 ~~~~~~f~~~m~~~~~~~~-~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~ 241 (358)
T 1zg3_A 163 SSTLSMFQDAMASDSRMFK-LVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFV 241 (358)
T ss_dssp HHHHHHHHHHHHHHHHTHH-HHHHHTHHHHHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCCCSSEEEE
T ss_pred hhhHHHHHHHHhcccHHHH-HHHHhcchhccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhcccCCCcEEE
Confidence 999 99999998877666 7888882 2778899999999999999999999999999999999999999877889999
Q ss_pred EcccCCCCCCCCEEEecccccccCCCC
Q 024046 246 GGNMFESVPEGDAILMKVGNFENYQSH 272 (273)
Q Consensus 246 ~gD~f~~~p~~D~~~l~~vLHd~~~~~ 272 (273)
.+|+++++|..|+|+++++||+|+|++
T Consensus 242 ~~d~~~~~~~~D~v~~~~vlh~~~d~~ 268 (358)
T 1zg3_A 242 GGDMFKSIPSADAVLLKWVLHDWNDEQ 268 (358)
T ss_dssp ECCTTTCCCCCSEEEEESCGGGSCHHH
T ss_pred eCccCCCCCCceEEEEcccccCCCHHH
Confidence 999999888789999999999998753
No 6
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=100.00 E-value=1.3e-39 Score=294.91 Aligned_cols=251 Identities=25% Similarity=0.402 Sum_probs=221.1
Q ss_pred chhhhhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhC-CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecc
Q 024046 17 EEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (273)
Q Consensus 17 ~~~~~~~~~~~l~~~~~g~~~~~aL~~a~elglfd~L~~~-g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~ 95 (273)
+.++..++...+++++.|++.+++|++++++|||++|... ||.|++|||+++|+ ++.+++.++|+||+|++.|+|++.
T Consensus 9 ~~~~~~~a~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~~~~t~~ela~~~~~-~~~~~~~l~rlLr~L~~~gll~~~ 87 (352)
T 1fp2_A 9 KPSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQV-PSSKIGNVRRLMRYLAHNGFFEII 87 (352)
T ss_dssp CSTHHHHHHHHHHHHHTTHHHHHHHHHHHHTTHHHHHHHHTSCEEHHHHHHHHTC-CGGGHHHHHHHHHHHHHTTSEEEE
T ss_pred ChHHHhhHHHHHHHHHHHHHHHHHHHHHHHCChhhhhhhcCCCccHHHHHHHhCc-CCCChHHHHHHHHHHHhCCeEEEe
Confidence 3467889999999999999999999999999999999975 49999999999999 222377999999999999999973
Q ss_pred ccCCCcceecChhchHhhcCCCCCccchhhcccCChhHHHHhhhHHHHHh-cCCCcchhccCCchhhhhhcCcchHHHHH
Q 024046 96 VSGGERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWLGLKDAVM-EGGIPFNRVHGMHIFEYASGNPRFNETYH 174 (273)
Q Consensus 96 ~~~~~~~y~lt~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~e~l~-~g~~~~~~~~g~~~~~~~~~~~~~~~~f~ 174 (273)
. .+++.|++|+.++.|+.+.+ .+++.++.+..++.++..|.+|+++++ +|+++|+..+|.++|+++..+|+..+.|.
T Consensus 88 ~-~~~~~y~~t~~s~~L~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~ 165 (352)
T 1fp2_A 88 T-KEEESYALTVASELLVRGSD-LCLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFN 165 (352)
T ss_dssp E-SSSEEEEECHHHHTTSTTSS-SCCHHHHHHHTCHHHHHGGGGHHHHHTCSSCCHHHHHHSSCHHHHHHHCHHHHHHHH
T ss_pred c-CCCCeEeCCHHHHHHhCCCC-ccHHHHHHHhcCchHHHHHHHHHHHHHhcCCChHHHHcCCCHHHHHHhChHHHHHHH
Confidence 1 03589999999998876654 578888877666777889999999999 88889998889999999999999999999
Q ss_pred HHHHhcchhhHHHHHhhcc-cCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhCCCCCCceEEEcccCCCC
Q 024046 175 EAMFNHSTIAMERILEHYE-GFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESV 253 (273)
Q Consensus 175 ~am~~~~~~~~~~il~~~~-~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~~~ri~~~~gD~f~~~ 253 (273)
.+|...+....+. ++.++ .+++..+|||||||+|.++..+++++|+++++++|+|.+++.+++.++|+++.+|+++++
T Consensus 166 ~~m~~~~~~~~~~-~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~ 244 (352)
T 1fp2_A 166 DAMASDSKLINLA-LRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSI 244 (352)
T ss_dssp HHHHHTHHHHHHH-HHTCHHHHTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBTTEEEEECCTTTCC
T ss_pred HHHHhcchhhhhH-HHhcccccccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeCHHHHhhcccCCCcEEEeccccCCC
Confidence 9999888776666 77772 277889999999999999999999999999999999999999988788999999999988
Q ss_pred CCCCEEEecccccccCCC
Q 024046 254 PEGDAILMKVGNFENYQS 271 (273)
Q Consensus 254 p~~D~~~l~~vLHd~~~~ 271 (273)
|..|+|+++++||+|+|+
T Consensus 245 p~~D~v~~~~~lh~~~d~ 262 (352)
T 1fp2_A 245 PNADAVLLKYILHNWTDK 262 (352)
T ss_dssp CCCSEEEEESCGGGSCHH
T ss_pred CCccEEEeehhhccCCHH
Confidence 878999999999999875
No 7
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=100.00 E-value=8.2e-40 Score=298.19 Aligned_cols=242 Identities=22% Similarity=0.379 Sum_probs=218.4
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCC
Q 024046 21 EEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE 100 (273)
Q Consensus 21 ~~~~~~~l~~~~~g~~~~~aL~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~ 100 (273)
..+...++++++.|++.+++|++|+++|||++|.+ ||.|++|||+++|+ +++.++|+||+|++.|+|++. ++
T Consensus 35 ~~~~~~~l~~l~~~~~~~~~l~~a~~lglf~~l~~-g~~t~~eLA~~~g~----~~~~l~rlLr~L~~~g~l~~~---~~ 106 (369)
T 3gwz_A 35 RAAAEETVNDILQGAWKARAIHVAVELGVPELLQE-GPRTATALAEATGA----HEQTLRRLLRLLATVGVFDDL---GH 106 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGTT-SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSSEEC---SS
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHCChhhhhcC-CCCCHHHHHHHHCc----CHHHHHHHHHHHHhCCCEEEe---CC
Confidence 34667889999999999999999999999999996 79999999999999 999999999999999999983 66
Q ss_pred cc-eecChhchHhhcCCCCCccchhhcccCChhHHHHhhhHHHHHhcCCCcchhccCCchhhhhhcCcchHHHHHHHHHh
Q 024046 101 RL-YALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFN 179 (273)
Q Consensus 101 ~~-y~lt~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~e~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~am~~ 179 (273)
+. |.+|+.++.|..+.+ .+++.++.+..++..+..|.+|++++++++++|...+|.++|+|+..+|+..+.|+.+|..
T Consensus 107 ~~~y~~t~~s~~L~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~ 185 (369)
T 3gwz_A 107 DDLFAQNALSAVLLPDPA-SPVATDARFQAAPWHWRAWEQLTHSVRTGEASFDVANGTSFWQLTHEDPKARELFNRAMGS 185 (369)
T ss_dssp TTEEECCHHHHTTSCCTT-CHHHHHHHHHHSHHHHHHHHTHHHHHHHSSCSHHHHHSSCHHHHHHHCHHHHHHHHHHHHH
T ss_pred CceEecCHHHHHHhcCCc-hhHHHHHHHcCCHHHHHHHHhHHHHHhCCCChhHhhcCCCHHHHHHhCHHHHHHHHHHHHH
Confidence 88 999999998765443 5677777765565577899999999999999999999989999999999999999999999
Q ss_pred cchhhHHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhCCC-------CCCceEEEcccCCC
Q 024046 180 HSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS-------YAGVEHVGGNMFES 252 (273)
Q Consensus 180 ~~~~~~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~-------~~ri~~~~gD~f~~ 252 (273)
.+....+.+++.++ +++..+|||||||+|.++..+++++|+++++++|+|.+++.|++ .+||+++.+|++.+
T Consensus 186 ~~~~~~~~l~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~ 264 (369)
T 3gwz_A 186 VSLTEAGQVAAAYD-FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEILPGDFFET 264 (369)
T ss_dssp HHHHHHHHHHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTTC
T ss_pred HHhhhHHHHHHhCC-CccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcCHHHHHHHHHhhhhcCcCCceEEeccCCCCC
Confidence 88887888999988 88899999999999999999999999999999999999988874 27899999999988
Q ss_pred CCC-CCEEEecccccccCCCC
Q 024046 253 VPE-GDAILMKVGNFENYQSH 272 (273)
Q Consensus 253 ~p~-~D~~~l~~vLHd~~~~~ 272 (273)
+|. .|+|+++++||+|+|++
T Consensus 265 ~p~~~D~v~~~~vlh~~~d~~ 285 (369)
T 3gwz_A 265 IPDGADVYLIKHVLHDWDDDD 285 (369)
T ss_dssp CCSSCSEEEEESCGGGSCHHH
T ss_pred CCCCceEEEhhhhhccCCHHH
Confidence 885 49999999999999763
No 8
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=100.00 E-value=1.3e-39 Score=297.10 Aligned_cols=259 Identities=40% Similarity=0.686 Sum_probs=209.0
Q ss_pred cCCCchhhhhHHHHHHH--HHHhhhhHHHHHHHHHHhChhHHHHhCC-C---CCHHHHHHHhCc--CCCCCcchHHHHHH
Q 024046 13 KKHEEEEEEEESYSHAM--QLAMGVVLPMATQAAIQLGVFEIIAKAG-E---LSAPEIAAQLQA--QNVKAPMMLDRMLR 84 (273)
Q Consensus 13 ~~~~~~~~~~~~~~~l~--~~~~g~~~~~aL~~a~elglfd~L~~~g-~---~t~~eLA~~~g~--~~~~~~~~l~rlL~ 84 (273)
..+...++..+++..++ +++.|++.+++|++|+++|||++|.+.| | +|++|||+++|+ +++.+++.++|+||
T Consensus 11 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~l~~a~~lgif~~L~~~g~pg~~~t~~eLA~~~~~~~~~~~~~~~l~rlLr 90 (372)
T 1fp1_D 11 NQISATSEQTEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLR 90 (372)
T ss_dssp --------CCHHHHHHHHHHHHHTTHHHHHHHHHHHTTHHHHHHTCSSTTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHH
T ss_pred cccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHCChHHHHHhcCCCCCCcCHHHHHHhcCCCCCCCcChHHHHHHHH
Confidence 34455667778888888 9999999999999999999999999766 7 999999999997 24446889999999
Q ss_pred HHhcCCceeccc---cCC--CcceecChhchHhhcCCCCCccchhhcccCChhHHHHhhhHHHHHhcC-CCcchhccCCc
Q 024046 85 LLVSHRVLECSV---SGG--ERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWLGLKDAVMEG-GIPFNRVHGMH 158 (273)
Q Consensus 85 ~L~~~gll~~~~---~~~--~~~y~lt~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~e~l~~g-~~~~~~~~g~~ 158 (273)
+|++.|+|++.. ..+ ++.|++|+.++.|+.+.+..++++++.+..++.++..|.+|+++++++ +++|+..+|.+
T Consensus 91 ~L~~~gll~~~~~~~~~g~~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~g~~ 170 (372)
T 1fp1_D 91 LLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVT 170 (372)
T ss_dssp HHHHTTSEEEEEEECTTSCEEEEEEECTTGGGGSTTCTTCCCTHHHHHHTCHHHHHHHTTHHHHHHSCC-----------
T ss_pred HHhhCCceEecccccCCCCcCCeEecCHHHHHHhCCCCCCCHHHHHHHhcCchHHHHHHHHHHHHHcCCCChhHHHhCCC
Confidence 999999999741 001 369999999998776643246788887766677788999999999998 88899888989
Q ss_pred hhhhhhcCcchHHHHHHHHHhcchhhHHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhCCC
Q 024046 159 IFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS 238 (273)
Q Consensus 159 ~~~~~~~~~~~~~~f~~am~~~~~~~~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~ 238 (273)
+|+++..+|+..+.|+.+|...+....+.+++.++.+++..+|||||||+|.++..+++++|+++++++|+|.+++.++.
T Consensus 171 ~~~~~~~~~~~~~~f~~~m~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~ 250 (372)
T 1fp1_D 171 KYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPP 250 (372)
T ss_dssp ---CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCC
T ss_pred HHHHHHhCHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeChHHHHHhhhh
Confidence 99999999999999999999888777788888886577889999999999999999999999999999999999999988
Q ss_pred CCCceEEEcccCCCCCCCCEEEecccccccCCC
Q 024046 239 YAGVEHVGGNMFESVPEGDAILMKVGNFENYQS 271 (273)
Q Consensus 239 ~~ri~~~~gD~f~~~p~~D~~~l~~vLHd~~~~ 271 (273)
.++|+++.+|+++++|.+|+|+++++||+|+|+
T Consensus 251 ~~~v~~~~~d~~~~~~~~D~v~~~~~lh~~~d~ 283 (372)
T 1fp1_D 251 LSGIEHVGGDMFASVPQGDAMILKAVCHNWSDE 283 (372)
T ss_dssp CTTEEEEECCTTTCCCCEEEEEEESSGGGSCHH
T ss_pred cCCCEEEeCCcccCCCCCCEEEEecccccCCHH
Confidence 889999999999988878999999999999875
No 9
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=100.00 E-value=5.1e-40 Score=295.15 Aligned_cols=236 Identities=21% Similarity=0.318 Sum_probs=211.8
Q ss_pred HHHHHHHhhhhHHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceec
Q 024046 26 SHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYAL 105 (273)
Q Consensus 26 ~~l~~~~~g~~~~~aL~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~l 105 (273)
..+++++.|++.+++|++|+++|||++|.+ ||.|++|||+++|+ +++.++|+||+|++.|++++. +++.|.+
T Consensus 7 ~~l~~~~~g~~~~~~l~~a~~lglf~~l~~-g~~t~~elA~~~~~----~~~~l~rlLr~l~~~gl~~~~---~~~~y~~ 78 (332)
T 3i53_A 7 HIGLRALADLATPMAVRVAATLRVADHIAA-GHRTAAEIASAAGA----HADSLDRLLRHLVAVGLFTRD---GQGVYGL 78 (332)
T ss_dssp SSCHHHHTCCHHHHHHHHHHHHTHHHHHHT-TCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC---TTSBEEE
T ss_pred HHHHHHHHhhHHHHHHHHHHHcChHHHHhc-CCCCHHHHHHHHCc----CHHHHHHHHHHHHhCCcEEec---CCCeEEc
Confidence 457899999999999999999999999987 79999999999999 999999999999999999983 5789999
Q ss_pred ChhchHhhcCCCCCccchhhcccCChhHH-HHhhhHHHHHhcCCCcchhccCCchhhhhhcCcchHHHHHHHHHhcchhh
Q 024046 106 NPVSKYFVSNKDGASLGHFMALPLDKVFM-ESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIA 184 (273)
Q Consensus 106 t~~s~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~e~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~am~~~~~~~ 184 (273)
|+.++.|..+.. .+++.++.+..++..+ ..|.+|++++++++++|+..+|.++|+++..+|+..+.|..+|...+...
T Consensus 79 t~~s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~ 157 (332)
T 3i53_A 79 TEFGEQLRDDHA-AGKRKWLDMNSAVGRGDLGFVELAHSIRTGQPAYPVRYGTSFWEDLGSDPVLSASFDTLMSHHLELD 157 (332)
T ss_dssp CTTGGGGSTTCT-TCCHHHHCTTSHHHHHGGGGGGHHHHHHHSSCSHHHHHSSCHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred CHhHHHHhcCCc-hhHHHHHHHcCCHhHHHHHHHHhHHHHhcCCCHHHHhhCCCHHHHHHhCHHHHHHHHHHHHHhHHhh
Confidence 999998865543 5678888766544455 78999999999999999988998899999999999999999999887776
Q ss_pred HHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhCCC-------CCCceEEEcccCCCCCC-C
Q 024046 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS-------YAGVEHVGGNMFESVPE-G 256 (273)
Q Consensus 185 ~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~-------~~ri~~~~gD~f~~~p~-~ 256 (273)
.+.+++.++ +++..+|||||||+|.++..+++++|+++++++|+|.+++.|++ .+||+++.+|++.++|. .
T Consensus 158 ~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~p~~~ 236 (332)
T 3i53_A 158 YTGIAAKYD-WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFDPLPAGA 236 (332)
T ss_dssp HTTGGGSSC-CGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCSC
T ss_pred HHHHHHhCC-CCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecCHHHHHHHHHhhhhcCcCcCeEEecCCCCCCCCCCC
Confidence 777888887 88889999999999999999999999999999999999998864 27899999999988885 5
Q ss_pred CEEEecccccccCCC
Q 024046 257 DAILMKVGNFENYQS 271 (273)
Q Consensus 257 D~~~l~~vLHd~~~~ 271 (273)
|+|+++++||+|+|+
T Consensus 237 D~v~~~~vlh~~~~~ 251 (332)
T 3i53_A 237 GGYVLSAVLHDWDDL 251 (332)
T ss_dssp SEEEEESCGGGSCHH
T ss_pred cEEEEehhhccCCHH
Confidence 999999999999985
No 10
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=100.00 E-value=1.3e-38 Score=286.01 Aligned_cols=235 Identities=23% Similarity=0.346 Sum_probs=211.3
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcc
Q 024046 23 ESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERL 102 (273)
Q Consensus 23 ~~~~~l~~~~~g~~~~~aL~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~ 102 (273)
.+...++++++|++.+++|++++++|||++|.+ ||.|++|||+.+|+ +++.++|+||+|++.|++++. +++.
T Consensus 7 ~~~~~l~~~~~~~~~~~~l~~~~~lgi~~~l~~-~~~t~~ela~~~~~----~~~~l~r~Lr~L~~~g~l~~~---~~~~ 78 (334)
T 2ip2_A 7 AAARNLIQVVTGEWKSRCVYVATRLGLADLIES-GIDSDETLAAAVGS----DAERIHRLMRLLVAFEIFQGD---TRDG 78 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHT-TCCSHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE---TTTE
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCcHHHHhC-CCCCHHHHHHHhCc----CHHHHHHHHHHHHhCCceEec---CCCe
Confidence 566899999999999999999999999999986 79999999999999 999999999999999999983 5689
Q ss_pred eecChhchHhhcCCCCCccchhhcccCChhHHHHhhhHHHHHhcCCCcchhccCCchhhhhhcCcchHHHHHHHHHhcch
Q 024046 103 YALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHST 182 (273)
Q Consensus 103 y~lt~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~e~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~am~~~~~ 182 (273)
|++|+.++.|. +.+ .+++.++.+..++.. ..|.+|++++++++++|+..+|.++|+++..+|+..+.|+.+| ..+.
T Consensus 79 y~~t~~s~~l~-~~~-~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m-~~~~ 154 (334)
T 2ip2_A 79 YANTPTSHLLR-DVE-GSFRDMVLFYGEEFH-AAWTPACEALLSGTPGFELAFGEDFYSYLKRCPDAGRRFLLAM-KASN 154 (334)
T ss_dssp EEECHHHHTTS-SST-TCSHHHHHHHTTHHH-HHTTTHHHHHHHCCCHHHHHHSSCHHHHHHHCHHHHHHHHHHH-GGGH
T ss_pred EecCHHHHHHh-CCC-ccHHHHHHHhcCchh-hHHHHHHHHHhcCCChhhhhcCCCHHHHHhhChHHHHHHHHHH-HHHH
Confidence 99999998877 432 467887766655544 8999999999999999988889999999999999999999999 8877
Q ss_pred hhHHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhCCCC-------CCceEEEcccCCCCCC
Q 024046 183 IAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFESVPE 255 (273)
Q Consensus 183 ~~~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~~-------~ri~~~~gD~f~~~p~ 255 (273)
...+.+++.++ +++ .+|||||||+|.++..+++++|+++++++|+|.+++.+++. +||+++.+|+++++|.
T Consensus 155 ~~~~~~~~~~~-~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 232 (334)
T 2ip2_A 155 LAFHEIPRLLD-FRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQEVPS 232 (334)
T ss_dssp HHHHHHHHHSC-CTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEECTTCTHHHHHHTHHHHHTTSEEEEESCTTTCCCS
T ss_pred HHHHHHHHhCC-CCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHhhcCCCCcEEEecCCCCCCCCC
Confidence 77788888887 888 99999999999999999999999999999999888877642 6899999999998887
Q ss_pred C-CEEEecccccccCCC
Q 024046 256 G-DAILMKVGNFENYQS 271 (273)
Q Consensus 256 ~-D~~~l~~vLHd~~~~ 271 (273)
+ |+|+++++||+|+++
T Consensus 233 ~~D~v~~~~vl~~~~~~ 249 (334)
T 2ip2_A 233 NGDIYLLSRIIGDLDEA 249 (334)
T ss_dssp SCSEEEEESCGGGCCHH
T ss_pred CCCEEEEchhccCCCHH
Confidence 5 999999999999875
No 11
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=100.00 E-value=1.2e-37 Score=283.23 Aligned_cols=241 Identities=19% Similarity=0.245 Sum_probs=202.1
Q ss_pred CchhhhhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHHh-CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceec
Q 024046 16 EEEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAK-AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (273)
Q Consensus 16 ~~~~~~~~~~~~l~~~~~g~~~~~aL~~a~elglfd~L~~-~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~ 94 (273)
+++.++.++...+++++.|++.+++|++++++|||++|.+ .||+|++|||+++|+ +++.++|+||+|++.|+|++
T Consensus 7 ~~~~~~~~a~~~l~~l~~g~~~~~~l~~a~~lgifd~L~~~~~~~t~~eLA~~~g~----~~~~l~rlLr~l~~~g~l~~ 82 (363)
T 3dp7_A 7 KEQCTAAEAQRLAQEIAFGPVVFQVSRLMLKFGIFQLLSGKREGYTLQEISGRTGL----TRYAAQVLLEASLTIGTILL 82 (363)
T ss_dssp CSCCCSTTHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHTCTTCBCHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEE
T ss_pred cCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhCHHHHHHhcCCCCCHHHHHHHhCc----CHHHHHHHHHHHhhCCCeEe
Confidence 3456788899999999999999999999999999999997 469999999999999 99999999999999999987
Q ss_pred cccCCCcceecChhchHhhcCCCCCccchhhcccCChhHHHHhhhHHHHHhcCCCcchhccC--CchhhhhhcCcchHH-
Q 024046 95 SVSGGERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWLGLKDAVMEGGIPFNRVHG--MHIFEYASGNPRFNE- 171 (273)
Q Consensus 95 ~~~~~~~~y~lt~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~e~l~~g~~~~~~~~g--~~~~~~~~~~~~~~~- 171 (273)
.++.|++|+.++.|+.+++ ...++.+ ..+..++.|.+|++++++|++++...+| .++|+++..+|+..+
T Consensus 83 ----~~~~y~~t~~s~~L~~~~~---~~~~~~~-~~~~~~~~~~~L~~~lr~g~~~~~~~~g~~~~~~~~~~~~~~~~~~ 154 (363)
T 3dp7_A 83 ----EEDRYVLAKAGWFLLNDKM---ARVNMEF-NHDVNYQGLFHLEEALLNGRPEGLKVFGEWPTIYEGLSQLPEQVQK 154 (363)
T ss_dssp ----ETTEEEECHHHHHHHHCHH---HHHHHHH-HHHTTHHHHTTHHHHHHHSSCGGGGGTCCCSSHHHHGGGSCHHHHH
T ss_pred ----cCCEEecccchHHhhCCCc---ccchhee-ecHHhhhhHHHHHHHHhcCCCccccccCchHhHHHHHhhCHHHHHH
Confidence 4689999999988886543 1222222 2345678999999999999888888888 689999999988665
Q ss_pred ---HHHHHHHhcchhhHHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhCCCC-------CC
Q 024046 172 ---TYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AG 241 (273)
Q Consensus 172 ---~f~~am~~~~~~~~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~~-------~r 241 (273)
.|+.+|..... ..+++.+. ..+..+|||||||+|.++..+++++|+++++++|+|.+++.|++. +|
T Consensus 155 ~~~~f~~~~~~~~~---~~~l~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~ 230 (363)
T 3dp7_A 155 SWFGFDHFYSDQSF---GKALEIVF-SHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSGSER 230 (363)
T ss_dssp HHHHHHHHTTCCCC---HHHHHHHG-GGCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECHHHHHHHHHHHTTCTTGGG
T ss_pred HHHHHHHHhhhhhH---HHHHHHhc-ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHHHHHHhcCcccc
Confidence 36777765432 23444443 357789999999999999999999999999999999999887642 58
Q ss_pred ceEEEcccCCC---CCCC-CEEEecccccccCCCC
Q 024046 242 VEHVGGNMFES---VPEG-DAILMKVGNFENYQSH 272 (273)
Q Consensus 242 i~~~~gD~f~~---~p~~-D~~~l~~vLHd~~~~~ 272 (273)
|+++.+|++++ +|.+ |+|+++++||+|++++
T Consensus 231 v~~~~~d~~~~~~~~p~~~D~v~~~~vlh~~~~~~ 265 (363)
T 3dp7_A 231 IHGHGANLLDRDVPFPTGFDAVWMSQFLDCFSEEE 265 (363)
T ss_dssp EEEEECCCCSSSCCCCCCCSEEEEESCSTTSCHHH
T ss_pred eEEEEccccccCCCCCCCcCEEEEechhhhCCHHH
Confidence 99999999994 6754 9999999999999763
No 12
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=100.00 E-value=1.7e-36 Score=275.98 Aligned_cols=240 Identities=20% Similarity=0.303 Sum_probs=213.1
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCc
Q 024046 22 EESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER 101 (273)
Q Consensus 22 ~~~~~~l~~~~~g~~~~~aL~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~ 101 (273)
.+....+++++.|++.+++|++++++|||+.|.. ||.|++|||+.+|+ +++.+.|+||+|++.|+|++. +++
T Consensus 14 ~~~~~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~-~~~t~~eLA~~~g~----~~~~l~r~Lr~L~~~Gll~~~---~~~ 85 (374)
T 1qzz_A 14 DQDLDVLLKNLGNLVTPMALRVAATLRLVDHLLA-GADTLAGLADRTDT----HPQALSRLVRHLTVVGVLEGG---EKQ 85 (374)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHHHT-TCCSHHHHHHHHTC----CHHHHHHHHHHHHHTTSEECC---CC-
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHcChHHHHhC-CCCCHHHHHHHhCc----CHHHHHHHHHHHhhCCCEEEe---CCC
Confidence 4567789999999999999999999999999975 79999999999999 999999999999999999973 456
Q ss_pred --ceecChhchHhhcCCCCCccchhhcccCChhHH-HHhhhHHHHHhcCCCcchhccCCchhhhhhcCcchHHHHHHHHH
Q 024046 102 --LYALNPVSKYFVSNKDGASLGHFMALPLDKVFM-ESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMF 178 (273)
Q Consensus 102 --~y~lt~~s~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~e~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~am~ 178 (273)
.|.+|+.+..|..+.+ .+++.++.+..++..+ ..|..|++.+++++++++..+|.++|++...+|+..+.|..+|.
T Consensus 86 ~~~y~~t~~s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~ 164 (374)
T 1qzz_A 86 GRPLRPTRLGMLLADGHP-AQQRAWLDLNGAVSHADLAFTGLLDVVRTGRPAYAGRYGRPFWEDLSADVALADSFDALMS 164 (374)
T ss_dssp CCCCEECTTGGGGSTTCT-TCHHHHHCTTSHHHHHHGGGGGHHHHHHHSCCSHHHHHSSCHHHHHHHCHHHHHHHHHTCG
T ss_pred CeEEEEChHHHhhcCCCc-ccHHHHHHHcCChhhHHHHHHHHHHHHhcCCChhhhhhCCCHHHHHhhChHHHHHHHHHHH
Confidence 8999999988876653 5778888776544456 78999999999999899888899999999889999999999999
Q ss_pred hcchhhHHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhCCCC-------CCceEEEcccCC
Q 024046 179 NHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFE 251 (273)
Q Consensus 179 ~~~~~~~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~~-------~ri~~~~gD~f~ 251 (273)
..+....+.+++.++ +++..+|||||||+|.++..+++++|+++++++|+|.+++.|++. +||+++.+|+++
T Consensus 165 ~~~~~~~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 243 (374)
T 1qzz_A 165 CDEDLAYEAPADAYD-WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFK 243 (374)
T ss_dssp GGSTTTTHHHHHTSC-CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTS
T ss_pred HhhHhHHHHHHHhCC-CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeCHHHHHHHHHHHHhcCCCCceEEEeCCCCC
Confidence 887776778888887 888899999999999999999999999999999999999887642 489999999999
Q ss_pred CCCCC-CEEEecccccccCCC
Q 024046 252 SVPEG-DAILMKVGNFENYQS 271 (273)
Q Consensus 252 ~~p~~-D~~~l~~vLHd~~~~ 271 (273)
++|.+ |+|+++++||+|+++
T Consensus 244 ~~~~~~D~v~~~~vl~~~~~~ 264 (374)
T 1qzz_A 244 PLPVTADVVLLSFVLLNWSDE 264 (374)
T ss_dssp CCSCCEEEEEEESCGGGSCHH
T ss_pred cCCCCCCEEEEeccccCCCHH
Confidence 88875 999999999999875
No 13
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=100.00 E-value=9.3e-36 Score=269.94 Aligned_cols=239 Identities=23% Similarity=0.356 Sum_probs=212.3
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcc
Q 024046 23 ESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERL 102 (273)
Q Consensus 23 ~~~~~l~~~~~g~~~~~aL~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~ 102 (273)
...+++++++.|++.+++|.+++++|||+.|.. ||.|++|||+.+|+ +++.+.|+||+|++.|+|.+. +++.
T Consensus 18 ~~~~~~~~~~~~~~~~~~l~~~~~l~i~~~l~~-~~~t~~ela~~~~~----~~~~l~r~L~~L~~~g~~~~~---~~g~ 89 (360)
T 1tw3_A 18 IDALRTLIRLGSLHTPMVVRTAATLRLVDHILA-GARTVKALAARTDT----RPEALLRLIRHLVAIGLLEED---APGE 89 (360)
T ss_dssp HHHHHHHHHHHCSHHHHHHHHHHHTTHHHHHHT-TCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE---ETTE
T ss_pred cchHHHHHHHHhHHHHHHHHHHHHhCHHHHHhC-CCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEec---CCCe
Confidence 446788999999999999999999999999975 79999999999999 999999999999999999973 5689
Q ss_pred eecChhchHhhcCCCCCccchhhcccCChh-HHHHhhhHHHHHhcCCCcchhccCCchhhhhhcCcchHHHHHHHHHhcc
Q 024046 103 YALNPVSKYFVSNKDGASLGHFMALPLDKV-FMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHS 181 (273)
Q Consensus 103 y~lt~~s~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~e~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~am~~~~ 181 (273)
|++|+.+..|..+.+ .+++.++.+...+. .+..|..|.+.+++|+++++..+|.++|+++..+|+....|..+|...+
T Consensus 90 y~~t~~s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~p~~~~~f~~~~~~~~ 168 (360)
T 1tw3_A 90 FVPTEVGELLADDHP-AAQRAWHDLTQAVARADISFTRLPDAIRTGRPTYESIYGKPFYEDLAGRPDLRASFDSLLACDQ 168 (360)
T ss_dssp EEECTTGGGGSTTST-TCHHHHTCTTSHHHHHGGGGGGHHHHHHHCCCCHHHHHSSCHHHHHHTCHHHHHHHHHHHTTTT
T ss_pred EEeCHHHHHHhcCCc-hhHHHHHHHhcCchhHHHHHHHHHHHHHcCCCHHHHhcCCCHHHHHHhChHHHHHHHHHHHHHH
Confidence 999999988876653 57788777654443 5678999999999998888888899999999888999999999999887
Q ss_pred hhhHHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhCCCC-------CCceEEEcccCCCCC
Q 024046 182 TIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFESVP 254 (273)
Q Consensus 182 ~~~~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~~-------~ri~~~~gD~f~~~p 254 (273)
....+.+++.++ +++..+|||||||+|.++..+++++|+++++++|+|.+++.|++. +||+++.+|+++++|
T Consensus 169 ~~~~~~l~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 247 (360)
T 1tw3_A 169 DVAFDAPAAAYD-WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLP 247 (360)
T ss_dssp TTTTHHHHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSCCS
T ss_pred HHhHHHHHHhCC-CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHhcCCCCceEEEeCCCCCCCC
Confidence 776778888887 888899999999999999999999999999999999998877642 489999999999888
Q ss_pred CC-CEEEecccccccCCC
Q 024046 255 EG-DAILMKVGNFENYQS 271 (273)
Q Consensus 255 ~~-D~~~l~~vLHd~~~~ 271 (273)
.+ |+|++.++||+|+++
T Consensus 248 ~~~D~v~~~~vl~~~~~~ 265 (360)
T 1tw3_A 248 RKADAIILSFVLLNWPDH 265 (360)
T ss_dssp SCEEEEEEESCGGGSCHH
T ss_pred CCccEEEEcccccCCCHH
Confidence 75 999999999999875
No 14
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=100.00 E-value=2e-35 Score=268.05 Aligned_cols=233 Identities=21% Similarity=0.354 Sum_probs=201.1
Q ss_pred hhhhhHHHHHHHHHHh-hhhHHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccc
Q 024046 18 EEEEEESYSHAMQLAM-GVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSV 96 (273)
Q Consensus 18 ~~~~~~~~~~l~~~~~-g~~~~~aL~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~ 96 (273)
+++..++..++++++. |++.+++|++++++|||+.|.+ ||.|++|||+++|+ +++.++|+||+|++.|+|++.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~lgif~~L~~-~~~t~~eLA~~~g~----~~~~l~rlLr~L~~~gll~~~- 97 (359)
T 1x19_A 24 NNDLLNYYHRANELVFKGLIEFSCMKAAIELDLFSHMAE-GPKDLATLAADTGS----VPPRLEMLLETLRQMRVINLE- 97 (359)
T ss_dssp CCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTHHHHHTT-CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE-
T ss_pred ccccCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHcC-CCCCHHHHHHHhCc----ChHHHHHHHHHHHhCCCeEee-
Confidence 4567778889999986 8999999999999999999987 89999999999999 999999999999999999973
Q ss_pred cCCCcceecChhchHhhcCCCC---CccchhhcccCChhHHHHhhhHHHHHhcCCCcchhccCCchhhhhhcCcc---hH
Q 024046 97 SGGERLYALNPVSKYFVSNKDG---ASLGHFMALPLDKVFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPR---FN 170 (273)
Q Consensus 97 ~~~~~~y~lt~~s~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~L~e~l~~g~~~~~~~~g~~~~~~~~~~~~---~~ 170 (273)
++.|++|+.+..++.+..+ .++++++.+. ....+..|.+|+++++++++ |+++..+|+ ..
T Consensus 98 ---~~~y~~t~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~l~~g~~----------~~~~~~~p~~~~~~ 163 (359)
T 1x19_A 98 ---DGKWSLTEFADYMFSPTPKEPNLHQTPVAKAM-AFLADDFYMGLSQAVRGQKN----------FKGQVPYPPVTRED 163 (359)
T ss_dssp ---TTEEEECHHHHHHSSSSCSBTTBCCHHHHHHH-HHHHHHTGGGHHHHHTTSCC----------CCCSSCSSCCSHHH
T ss_pred ---CCeEecCHHHHHHhcCCCCCccccHHHHHHHH-HHHHHHHHHHHHHHHhcCCC----------CcccccCchhhHHH
Confidence 4699999976544444333 4677777654 35577899999999988653 666777888 89
Q ss_pred HHHHHHHHhcch-hhHHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhCCC-------CCCc
Q 024046 171 ETYHEAMFNHST-IAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS-------YAGV 242 (273)
Q Consensus 171 ~~f~~am~~~~~-~~~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~-------~~ri 242 (273)
+.|..+|...+. ...+.+++.++ +++..+|||||||+|.++..+++++|+++++++|+|.+++.|++ .+||
T Consensus 164 ~~f~~~m~~~~~~~~~~~l~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v 242 (359)
T 1x19_A 164 NLYFEEIHRSNAKFAIQLLLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRM 242 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHCC-CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCTTTE
T ss_pred HHHHHHHHHhccchhHHHHHHhcC-CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCCCE
Confidence 999999999887 77788899888 88889999999999999999999999999999999999988764 2579
Q ss_pred eEEEcccCC-CCCCCCEEEecccccccCCC
Q 024046 243 EHVGGNMFE-SVPEGDAILMKVGNFENYQS 271 (273)
Q Consensus 243 ~~~~gD~f~-~~p~~D~~~l~~vLHd~~~~ 271 (273)
+++.+|+++ ++|.+|+|++.++||+|+|+
T Consensus 243 ~~~~~d~~~~~~~~~D~v~~~~vlh~~~d~ 272 (359)
T 1x19_A 243 RGIAVDIYKESYPEADAVLFCRILYSANEQ 272 (359)
T ss_dssp EEEECCTTTSCCCCCSEEEEESCGGGSCHH
T ss_pred EEEeCccccCCCCCCCEEEEechhccCCHH
Confidence 999999998 56667999999999999874
No 15
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=100.00 E-value=1.5e-34 Score=259.15 Aligned_cols=229 Identities=17% Similarity=0.174 Sum_probs=201.1
Q ss_pred HHHHHHHhhhhHHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceec
Q 024046 26 SHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYAL 105 (273)
Q Consensus 26 ~~l~~~~~g~~~~~aL~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~l 105 (273)
..+++++.|++.+++|++++++|||++|.+ ||.|++|||+++|+ +++.++|+||+|++.|+|++ .++.|++
T Consensus 8 ~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~-~~~t~~ela~~~~~----~~~~l~r~L~~L~~~g~l~~----~~~~y~~ 78 (335)
T 2r3s_A 8 ALFFNTVNAYQRSAAIKAAVELNVFTAISQ-GIESSQSLAQKCQT----SERGMRMLCDYLVIIGFMTK----QAEGYRL 78 (335)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHTTHHHHHTT-SEECHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE----ETTEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHcChHHHHhc-CCCCHHHHHHHhCC----CchHHHHHHHHHHhcCCeEe----cCCEEec
Confidence 678999999999999999999999999997 89999999999999 99999999999999999986 4689999
Q ss_pred Chhc-hHhhcCCCCCccchhhcccCChhHHHHhhhHHHHHhcCCCcchhccCCchhhhhhcCcchHHHHHHHHHhcchhh
Q 024046 106 NPVS-KYFVSNKDGASLGHFMALPLDKVFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIA 184 (273)
Q Consensus 106 t~~s-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~e~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~am~~~~~~~ 184 (273)
|+.+ ..+..+. +.+++.++.+..++..+..|.+|++.+++++++|+ + |+++..+++..+.|...|.......
T Consensus 79 t~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (335)
T 2r3s_A 79 TSDSAMFLDRQS-KFYVGDAIEFLLSPMITNGFNDLTAAVLKGGTAIS-----S-EGTLSPEHPVWVQFAKAMSPMMANP 151 (335)
T ss_dssp CHHHHHHTCTTS-TTCCGGGHHHHTCHHHHGGGTTHHHHHHHTSCCST-----T-TGGGSTTCTHHHHHHHHSGGGGHHH
T ss_pred CHHHHHHhccCC-cHHHHHHHHHhcchhhHHHHHhHHHHHhcCCCCCC-----C-cccccCCHHHHHHHHHHHHHHHhhh
Confidence 9999 4555443 35678888776555678899999999999887654 3 7777888889999999999888777
Q ss_pred HHHHHhhcccC--CCcceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhCCCC-------CCceEEEcccCC-CCC
Q 024046 185 MERILEHYEGF--QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFE-SVP 254 (273)
Q Consensus 185 ~~~il~~~~~~--~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~~-------~ri~~~~gD~f~-~~p 254 (273)
...+++.++ + ++..+|||||||+|.++..+++++|+.+++++|++.+++.|++. +||+++.+|+++ ++|
T Consensus 152 ~~~~~~~~~-~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 230 (335)
T 2r3s_A 152 AQLIAQLVN-ENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEVDYG 230 (335)
T ss_dssp HHHHHHHHT-C--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCTTTSCCC
T ss_pred HHHHHHhcc-cccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCcceEEEecccccCCCC
Confidence 778888887 7 78899999999999999999999999999999999888877652 579999999998 677
Q ss_pred CC-CEEEecccccccCCC
Q 024046 255 EG-DAILMKVGNFENYQS 271 (273)
Q Consensus 255 ~~-D~~~l~~vLHd~~~~ 271 (273)
.+ |+|+++++||+|+++
T Consensus 231 ~~~D~v~~~~~l~~~~~~ 248 (335)
T 2r3s_A 231 NDYDLVLLPNFLHHFDVA 248 (335)
T ss_dssp SCEEEEEEESCGGGSCHH
T ss_pred CCCcEEEEcchhccCCHH
Confidence 65 999999999999765
No 16
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=100.00 E-value=6.6e-34 Score=257.05 Aligned_cols=228 Identities=15% Similarity=0.227 Sum_probs=189.4
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcce
Q 024046 24 SYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLY 103 (273)
Q Consensus 24 ~~~~l~~~~~g~~~~~aL~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y 103 (273)
....+++++.|++.+++|++|+++|||++|.. |.|++|||+++|+ +++.++|+||+|++.|+|++. ++.|
T Consensus 24 ~p~~l~~~~~~~~~~~~l~~a~~lgif~~l~~--~~t~~elA~~~~~----~~~~l~rlLr~L~~~gll~~~----~~~y 93 (352)
T 3mcz_A 24 SVVDLVKLSDQYRQSAILHYAVADKLFDLTQT--GRTPAEVAASFGM----VEGKAAILLHALAALGLLTKE----GDAF 93 (352)
T ss_dssp SHHHHHHHHHTHHHHHHHHHHHHTTHHHHTTS--CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE----TTEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCChHHHhCC--CCCHHHHHHHhCc----ChHHHHHHHHHHHHCCCeEec----CCee
Confidence 33449999999999999999999999999964 9999999999999 999999999999999999983 4789
Q ss_pred ecChhchHhhcCCCCCccchhhcccCChhHHHHhhhHHHHHhcCCCc-chhccCCchhhhhhcCcchHHHHHHHHHhcch
Q 024046 104 ALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWLGLKDAVMEGGIP-FNRVHGMHIFEYASGNPRFNETYHEAMFNHST 182 (273)
Q Consensus 104 ~lt~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~e~l~~g~~~-~~~~~g~~~~~~~~~~~~~~~~f~~am~~~~~ 182 (273)
.+|+.++.++.+..+.+++.++.+. ...+..|.+|++++++|++. |+.. .++..+++..+.|..+|.....
T Consensus 94 ~~t~~s~~~l~~~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~g~~~~f~~~------~~~~~~~~~~~~f~~~m~~~~~ 165 (352)
T 3mcz_A 94 RNTALTERYLTTTSADYIGPIVEHQ--YLQWDNWPRLGEILRSEKPLAFQQE------SRFAHDTRARDAFNDAMVRLSQ 165 (352)
T ss_dssp EECHHHHHHHSTTCTTCCHHHHHHH--HTTTTTGGGHHHHHTCSSCCTTSHH------HHTTTCHHHHHHHHHHHHHHHH
T ss_pred ecCHHHHhhccCCChhhHHHHHHHh--HHHHHHHHHHHHHHhCCCCCCcccc------cccccCHHHHHHHHHHHHhhhh
Confidence 9999998666555556677666532 33567899999999988654 2211 1235678888999999987332
Q ss_pred hhHHHHHhhcccCCC-cceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhCCCC-------CCceEEEcccCCC--
Q 024046 183 IAMERILEHYEGFQN-VERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFES-- 252 (273)
Q Consensus 183 ~~~~~il~~~~~~~~-~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~~-------~ri~~~~gD~f~~-- 252 (273)
. +..+++.++ +.+ ..+|||||||+|.++..+++++|+++++++|+|.+++.++.. +||+++.+|++++
T Consensus 166 ~-~~~~l~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 243 (352)
T 3mcz_A 166 P-MVDVVSELG-VFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRVEFFEKNLLDARN 243 (352)
T ss_dssp H-HHHHHHTCG-GGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCGGGEEEEECCTTCGGG
T ss_pred h-HHHHHHhCC-CcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcCCCCceEEEeCCcccCcc
Confidence 2 237888888 776 899999999999999999999999999999999988877642 6899999999995
Q ss_pred -CCCC-CEEEecccccccCCC
Q 024046 253 -VPEG-DAILMKVGNFENYQS 271 (273)
Q Consensus 253 -~p~~-D~~~l~~vLHd~~~~ 271 (273)
.|.+ |+|+++++||+|+|+
T Consensus 244 ~~~~~~D~v~~~~vlh~~~~~ 264 (352)
T 3mcz_A 244 FEGGAADVVMLNDCLHYFDAR 264 (352)
T ss_dssp GTTCCEEEEEEESCGGGSCHH
T ss_pred cCCCCccEEEEecccccCCHH
Confidence 5555 999999999999875
No 17
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=99.39 E-value=2.7e-12 Score=116.59 Aligned_cols=188 Identities=11% Similarity=0.046 Sum_probs=119.6
Q ss_pred ChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhchHhhcCCCCCccchhh-c
Q 024046 48 GVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNKDGASLGHFM-A 126 (273)
Q Consensus 48 glfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~~l~~~~~~~~~~~~~-~ 126 (273)
++|..| . +|.|+.|||..+|+ +++.++++|+.|.+.|+++. .++ |++|+.++.++...........+ .
T Consensus 47 ~ll~~L-~-~~~t~~eLa~~~g~----~~~~v~~~L~~l~~~gll~~----~~~-~~lt~~~~~~l~~~~~~~~~~~~~~ 115 (373)
T 2qm3_A 47 NVLSAV-L-ASDDIWRIVDLSEE----PLPLVVAILESLNELGYVTF----EDG-VKLTEKGEELVAEYGIGKRYDFTCP 115 (373)
T ss_dssp HHHHHH-H-HCSCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEC----SSS-SEECHHHHHHHHHHTCCCCCC----
T ss_pred HHHHHh-c-CCCCHHHHHHHhCC----ChHHHHHHHHHHhhCCcEEE----CCC-EEECHHHHHHHHhcCccccccccch
Confidence 789999 5 69999999999999 99999999999999999986 224 99999876544332111111111 0
Q ss_pred ccC-----ChhHHHHhhhHHHHHhcCCCcchhccCCchhhhhhcCcchHHHHHHHHHhcchhhHHHHHhhcccCCCcceE
Q 024046 127 LPL-----DKVFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERL 201 (273)
Q Consensus 127 ~~~-----~~~~~~~~~~L~e~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~am~~~~~~~~~~il~~~~~~~~~~~v 201 (273)
... ...+...|..+.+.++....+ . ..|+-. ...........+ .... .. .....+|
T Consensus 116 ~~~g~g~~~~~~~~~~~~l~~~~~~~~~~-~-----~~~~~~--~~~~~~~~~~~l---------~~~~-~~-~~~~~~V 176 (373)
T 2qm3_A 116 HCQGKTVDLQAFADLLEQFREIVKDRPEP-L-----HEFDQA--YVTPETTVARVI---------LMHT-RG-DLENKDI 176 (373)
T ss_dssp --------CGGGHHHHHHHHHHHTTCCCC-C-----GGGTCC--CBCHHHHHHHHH---------HHHH-TT-CSTTCEE
T ss_pred hhcCCCcchhhhHHHHHHHHHHHhcCCcc-c-----hhcCCe--ecCHHHHHHHHH---------HHhh-cC-CCCCCEE
Confidence 000 011122344555555532211 0 111100 001111111110 0011 11 2245899
Q ss_pred EEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCCCCCC----C-CEEEeccccc
Q 024046 202 VDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVPE----G-DAILMKVGNF 266 (273)
Q Consensus 202 vDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~~~p~----~-D~~~l~~vLH 266 (273)
|||| |+|.++..+++..|+.+++++|+ |.+++.|+++ ++|+++.+|+++++|. . |+|++...+|
T Consensus 177 LDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p~~ 252 (373)
T 2qm3_A 177 FVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDPPET 252 (373)
T ss_dssp EEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECCCSS
T ss_pred EEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECCCCc
Confidence 9999 99999999999999889999999 8999887653 4899999999986552 3 9999976554
No 18
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=99.04 E-value=2.1e-10 Score=99.11 Aligned_cols=77 Identities=13% Similarity=0.226 Sum_probs=66.0
Q ss_pred CCCcceEEEecCCccHHHHHHHHHC--CCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCC-CCCCCCEEEecc
Q 024046 195 FQNVERLVDVGGGFGVTLSMITSKY--PQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPEGDAILMKV 263 (273)
Q Consensus 195 ~~~~~~vvDVGGG~G~~~~~l~~~~--P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~-~~p~~D~~~l~~ 263 (273)
.++..+|||||||+|.++..+++++ |+++++++|+ |.+++.|++. .+|+++.+|+.+ |.+..|++++..
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~~~ 147 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNF 147 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEEES
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccccccceeee
Confidence 4677899999999999999999985 6789999998 8889887642 589999999987 555569999999
Q ss_pred cccccCCC
Q 024046 264 GNFENYQS 271 (273)
Q Consensus 264 vLHd~~~~ 271 (273)
+||..+++
T Consensus 148 ~l~~~~~~ 155 (261)
T 4gek_A 148 TLQFLEPS 155 (261)
T ss_dssp CGGGSCHH
T ss_pred eeeecCch
Confidence 99988754
No 19
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=99.02 E-value=4.7e-10 Score=94.42 Aligned_cols=85 Identities=14% Similarity=0.196 Sum_probs=69.6
Q ss_pred HHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC----CCCceEEEcccCC-CCCCC-CEE
Q 024046 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFE-SVPEG-DAI 259 (273)
Q Consensus 187 ~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~ri~~~~gD~f~-~~p~~-D~~ 259 (273)
.++..+....+..+|||||||+|.++..+++++|..+++++|+ |.+++.++. .++++++.+|+.+ +.+.. |+|
T Consensus 34 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v 113 (234)
T 3dtn_A 34 VSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDMV 113 (234)
T ss_dssp HHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCCSCEEEE
T ss_pred HHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCCCCceEE
Confidence 3444443234568999999999999999999999999999998 888877654 2589999999998 45544 999
Q ss_pred EecccccccCCC
Q 024046 260 LMKVGNFENYQS 271 (273)
Q Consensus 260 ~l~~vLHd~~~~ 271 (273)
++..++|.++++
T Consensus 114 ~~~~~l~~~~~~ 125 (234)
T 3dtn_A 114 VSALSIHHLEDE 125 (234)
T ss_dssp EEESCGGGSCHH
T ss_pred EEeCccccCCHH
Confidence 999999999764
No 20
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Probab=98.98 E-value=2.3e-09 Score=92.11 Aligned_cols=82 Identities=15% Similarity=0.180 Sum_probs=70.0
Q ss_pred HHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCCCCceEEEcccCC-CCCCC--CEEEe
Q 024046 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE-SVPEG--DAILM 261 (273)
Q Consensus 186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~ri~~~~gD~f~-~~p~~--D~~~l 261 (273)
..+++.++ ..+..+|||||||+|.++..+++ |..+++++|+ |.+++.++...+++++.+|+.. ++|.+ |+|++
T Consensus 24 ~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~ 100 (261)
T 3ege_A 24 NAIINLLN-LPKGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVIS 100 (261)
T ss_dssp HHHHHHHC-CCTTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEEEE
T ss_pred HHHHHHhC-CCCCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEEEE
Confidence 44555555 56789999999999999999998 7889999998 8889988877799999999987 56643 99999
Q ss_pred cccccccCC
Q 024046 262 KVGNFENYQ 270 (273)
Q Consensus 262 ~~vLHd~~~ 270 (273)
.+++|++++
T Consensus 101 ~~~l~~~~~ 109 (261)
T 3ege_A 101 ILAIHHFSH 109 (261)
T ss_dssp ESCGGGCSS
T ss_pred cchHhhccC
Confidence 999999865
No 21
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}
Probab=98.97 E-value=2.1e-09 Score=93.43 Aligned_cols=77 Identities=16% Similarity=0.228 Sum_probs=65.9
Q ss_pred CCcceEEEecCCc---cHHHHHHHHHCCCCeEEEeec-hHHHHhCCC----CCCceEEEcccCCC------------CC-
Q 024046 196 QNVERLVDVGGGF---GVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFES------------VP- 254 (273)
Q Consensus 196 ~~~~~vvDVGGG~---G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~ri~~~~gD~f~~------------~p- 254 (273)
.+..+|||||||+ |.++..+.+.+|+.+++.+|+ |.+++.|+. .++++++.+|++++ ++
T Consensus 76 ~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~ 155 (274)
T 2qe6_A 76 AGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDF 155 (274)
T ss_dssp TCCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCT
T ss_pred cCCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCC
Confidence 3568999999999 999988889999999999999 999988764 27899999999862 23
Q ss_pred -CCCEEEecccccccCCCC
Q 024046 255 -EGDAILMKVGNFENYQSH 272 (273)
Q Consensus 255 -~~D~~~l~~vLHd~~~~~ 272 (273)
..|++++..+||++++++
T Consensus 156 ~~~d~v~~~~vlh~~~d~~ 174 (274)
T 2qe6_A 156 SRPAAIMLVGMLHYLSPDV 174 (274)
T ss_dssp TSCCEEEETTTGGGSCTTT
T ss_pred CCCEEEEEechhhhCCcHH
Confidence 349999999999999863
No 22
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=98.96 E-value=1.1e-09 Score=91.42 Aligned_cols=72 Identities=17% Similarity=0.250 Sum_probs=61.2
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcccCC-CCCCC--CEEEeccccc
Q 024046 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG--DAILMKVGNF 266 (273)
Q Consensus 196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-----~ri~~~~gD~f~-~~p~~--D~~~l~~vLH 266 (273)
+...+|||||||+|.++..+++++| +++++|+ |.+++.++.. ++++++.+|+.+ +++.+ |+|++..++|
T Consensus 37 ~~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~ 114 (227)
T 1ve3_A 37 KKRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIV 114 (227)
T ss_dssp CSCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGG
T ss_pred CCCCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchH
Confidence 3478999999999999999999988 7899998 8888877643 789999999988 56643 9999999977
Q ss_pred ccC
Q 024046 267 ENY 269 (273)
Q Consensus 267 d~~ 269 (273)
.++
T Consensus 115 ~~~ 117 (227)
T 1ve3_A 115 HFE 117 (227)
T ss_dssp GCC
T ss_pred hCC
Confidence 665
No 23
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Probab=98.93 E-value=1.6e-09 Score=89.64 Aligned_cols=82 Identities=17% Similarity=0.296 Sum_probs=67.6
Q ss_pred HHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCC-CCCCC
Q 024046 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPEG 256 (273)
Q Consensus 186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~-~~p~~ 256 (273)
..+++.++ .++. +|||||||+|.++..++++ |..+++++|+ |.+++.++.. ++++++.+|+.+ +++.+
T Consensus 34 ~~~~~~~~-~~~~-~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 110 (219)
T 3dlc_A 34 ENIINRFG-ITAG-TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDN 110 (219)
T ss_dssp HHHHHHHC-CCEE-EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTT
T ss_pred HHHHHhcC-CCCC-EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCcc
Confidence 44555555 4444 9999999999999999999 8889999998 8888777642 589999999998 67653
Q ss_pred --CEEEecccccccCC
Q 024046 257 --DAILMKVGNFENYQ 270 (273)
Q Consensus 257 --D~~~l~~vLHd~~~ 270 (273)
|+|++..++|++++
T Consensus 111 ~~D~v~~~~~l~~~~~ 126 (219)
T 3dlc_A 111 YADLIVSRGSVFFWED 126 (219)
T ss_dssp CEEEEEEESCGGGCSC
T ss_pred cccEEEECchHhhccC
Confidence 99999999999854
No 24
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41
Probab=98.93 E-value=1.5e-09 Score=92.88 Aligned_cols=84 Identities=18% Similarity=0.305 Sum_probs=68.9
Q ss_pred HHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCC-CCCCC
Q 024046 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPEG 256 (273)
Q Consensus 185 ~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~-~~p~~ 256 (273)
...+++.++ .....+|||||||+|.++..++++.+ +++++|+ |.+++.|+.. ++++++.+|+.+ ++|.+
T Consensus 26 ~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~ 102 (260)
T 1vl5_A 26 LAKLMQIAA-LKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDE 102 (260)
T ss_dssp HHHHHHHHT-CCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTT
T ss_pred HHHHHHHhC-CCCCCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCCC
Confidence 345666665 66778999999999999999999987 7999998 8888877542 679999999987 67743
Q ss_pred --CEEEecccccccCCC
Q 024046 257 --DAILMKVGNFENYQS 271 (273)
Q Consensus 257 --D~~~l~~vLHd~~~~ 271 (273)
|+|++..++|.++|.
T Consensus 103 ~fD~V~~~~~l~~~~d~ 119 (260)
T 1vl5_A 103 RFHIVTCRIAAHHFPNP 119 (260)
T ss_dssp CEEEEEEESCGGGCSCH
T ss_pred CEEEEEEhhhhHhcCCH
Confidence 999999999999763
No 25
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Probab=98.89 E-value=2.5e-09 Score=88.89 Aligned_cols=84 Identities=23% Similarity=0.316 Sum_probs=71.0
Q ss_pred HHHHhhcccCCCcceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhCCCC------CCceEEEcccCC-CCCCC
Q 024046 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPEG 256 (273)
Q Consensus 186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~-~~p~~ 256 (273)
..+++.++ ..+..+|||||||+|.++..+++.. |+.+++++|. |.+++.++.. ++++++.+|+.. +++.+
T Consensus 27 ~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~ 105 (219)
T 3dh0_A 27 EKVLKEFG-LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDN 105 (219)
T ss_dssp HHHHHHHT-CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSS
T ss_pred HHHHHHhC-CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCC
Confidence 45566665 6777899999999999999999997 8899999998 8888877642 589999999987 56654
Q ss_pred --CEEEecccccccCC
Q 024046 257 --DAILMKVGNFENYQ 270 (273)
Q Consensus 257 --D~~~l~~vLHd~~~ 270 (273)
|+|++..++|++++
T Consensus 106 ~fD~v~~~~~l~~~~~ 121 (219)
T 3dh0_A 106 TVDFIFMAFTFHELSE 121 (219)
T ss_dssp CEEEEEEESCGGGCSS
T ss_pred CeeEEEeehhhhhcCC
Confidence 99999999999865
No 26
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=98.88 E-value=8.3e-09 Score=85.38 Aligned_cols=84 Identities=14% Similarity=0.166 Sum_probs=68.4
Q ss_pred HHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC--CCceEEEcccCCCCCCC--CEEE
Q 024046 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--AGVEHVGGNMFESVPEG--DAIL 260 (273)
Q Consensus 186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~--~ri~~~~gD~f~~~p~~--D~~~ 260 (273)
..+++.+...++..+|||||||+|.++..++++ ..+++++|. |.+++.++.. ++++++.+|+.+..+.+ |+|+
T Consensus 35 ~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~~D~v~ 112 (218)
T 3ou2_A 35 PAALERLRAGNIRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTPDRQWDAVF 112 (218)
T ss_dssp HHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSCCCSSCEEEEE
T ss_pred HHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHhcCCCCeEEEecccccCCCCCceeEEE
Confidence 344555443556679999999999999999999 568999998 8888887653 68999999998865543 9999
Q ss_pred ecccccccCCC
Q 024046 261 MKVGNFENYQS 271 (273)
Q Consensus 261 l~~vLHd~~~~ 271 (273)
+.++||+++++
T Consensus 113 ~~~~l~~~~~~ 123 (218)
T 3ou2_A 113 FAHWLAHVPDD 123 (218)
T ss_dssp EESCGGGSCHH
T ss_pred EechhhcCCHH
Confidence 99999998864
No 27
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18
Probab=98.86 E-value=5.6e-09 Score=91.10 Aligned_cols=83 Identities=16% Similarity=0.299 Sum_probs=68.6
Q ss_pred HHHHhhc----ccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCC-C
Q 024046 186 ERILEHY----EGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-S 252 (273)
Q Consensus 186 ~~il~~~----~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~-~ 252 (273)
..+++.+ + +.+..+|||||||+|.++..++++++ .+++++|+ |.+++.|+.. ++|+++.+|+.. |
T Consensus 68 ~~l~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 145 (297)
T 2o57_A 68 EWLASELAMTGV-LQRQAKGLDLGAGYGGAARFLVRKFG-VSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIP 145 (297)
T ss_dssp HHHHHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCS
T ss_pred HHHHHHhhhccC-CCCCCEEEEeCCCCCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCC
Confidence 4455555 4 66778999999999999999999974 58999998 7777776542 689999999998 6
Q ss_pred CCCC--CEEEecccccccCC
Q 024046 253 VPEG--DAILMKVGNFENYQ 270 (273)
Q Consensus 253 ~p~~--D~~~l~~vLHd~~~ 270 (273)
+|.+ |+|++..++|++++
T Consensus 146 ~~~~~fD~v~~~~~l~~~~~ 165 (297)
T 2o57_A 146 CEDNSYDFIWSQDAFLHSPD 165 (297)
T ss_dssp SCTTCEEEEEEESCGGGCSC
T ss_pred CCCCCEeEEEecchhhhcCC
Confidence 6654 99999999999876
No 28
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Probab=98.86 E-value=4.3e-09 Score=89.65 Aligned_cols=83 Identities=14% Similarity=0.155 Sum_probs=69.7
Q ss_pred HHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC-CCCceEEEcccCCCCCCC--CEEEec
Q 024046 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-YAGVEHVGGNMFESVPEG--DAILMK 262 (273)
Q Consensus 187 ~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-~~ri~~~~gD~f~~~p~~--D~~~l~ 262 (273)
.+++.++ .....+|||||||+|.++..+++++|..+++++|+ |.+++.++. .++++++.+|+.+..+.+ |+|++.
T Consensus 24 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~ 102 (259)
T 2p35_A 24 DLLAQVP-LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWKPAQKADLLYAN 102 (259)
T ss_dssp HHHTTCC-CSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCCCSSCEEEEEEE
T ss_pred HHHHhcC-CCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcCccCCcCEEEEe
Confidence 4556555 56678999999999999999999999999999998 888887765 378999999998722443 999999
Q ss_pred ccccccCC
Q 024046 263 VGNFENYQ 270 (273)
Q Consensus 263 ~vLHd~~~ 270 (273)
.++|..++
T Consensus 103 ~~l~~~~~ 110 (259)
T 2p35_A 103 AVFQWVPD 110 (259)
T ss_dssp SCGGGSTT
T ss_pred CchhhCCC
Confidence 99998865
No 29
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}
Probab=98.86 E-value=5.4e-09 Score=90.14 Aligned_cols=77 Identities=16% Similarity=0.339 Sum_probs=67.1
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCC-CCCCC--CEEEeccc
Q 024046 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPEG--DAILMKVG 264 (273)
Q Consensus 195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~-~~p~~--D~~~l~~v 264 (273)
+.+..+|||||||+|.++..+++.+|..+++++|. |.+++.++.. ++++++.+|+.. +++.+ |+|++.++
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 114 (276)
T 3mgg_A 35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFV 114 (276)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESC
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEech
Confidence 56778999999999999999999999999999998 8888877542 679999999998 55543 99999999
Q ss_pred ccccCCC
Q 024046 265 NFENYQS 271 (273)
Q Consensus 265 LHd~~~~ 271 (273)
||++++.
T Consensus 115 l~~~~~~ 121 (276)
T 3mgg_A 115 LEHLQSP 121 (276)
T ss_dssp GGGCSCH
T ss_pred hhhcCCH
Confidence 9998764
No 30
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}
Probab=98.85 E-value=8e-09 Score=88.82 Aligned_cols=83 Identities=13% Similarity=0.250 Sum_probs=69.2
Q ss_pred HHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCC-CCCCC
Q 024046 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPEG 256 (273)
Q Consensus 186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~-~~p~~ 256 (273)
..+++.++ ..+..+|||||||+|.++..+++++ ..+++++|+ |.+++.++.. ++++++.+|+.+ ++|.+
T Consensus 51 ~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 128 (273)
T 3bus_A 51 DEMIALLD-VRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDA 128 (273)
T ss_dssp HHHHHHSC-CCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTT
T ss_pred HHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCCC
Confidence 45666666 6677899999999999999999988 579999998 7777766532 589999999988 66653
Q ss_pred --CEEEecccccccCC
Q 024046 257 --DAILMKVGNFENYQ 270 (273)
Q Consensus 257 --D~~~l~~vLHd~~~ 270 (273)
|+|++..++|+.++
T Consensus 129 ~fD~v~~~~~l~~~~~ 144 (273)
T 3bus_A 129 SFDAVWALESLHHMPD 144 (273)
T ss_dssp CEEEEEEESCTTTSSC
T ss_pred CccEEEEechhhhCCC
Confidence 99999999999865
No 31
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=98.85 E-value=8.7e-09 Score=87.67 Aligned_cols=84 Identities=14% Similarity=0.144 Sum_probs=68.3
Q ss_pred HHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCC-CCCC
Q 024046 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPE 255 (273)
Q Consensus 185 ~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~-~~p~ 255 (273)
...++..++ ..+..+|||||||+|.++..+++.+ ..+++++|+ |.+++.|++. ++|+++.+|+.+ +.+.
T Consensus 25 ~~~l~~~~~-~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 102 (256)
T 1nkv_A 25 YATLGRVLR-MKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANE 102 (256)
T ss_dssp HHHHHHHTC-CCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSS
T ss_pred HHHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcCC
Confidence 344556555 6677899999999999999999998 578999998 8888877542 589999999987 3333
Q ss_pred C-CEEEecccccccCC
Q 024046 256 G-DAILMKVGNFENYQ 270 (273)
Q Consensus 256 ~-D~~~l~~vLHd~~~ 270 (273)
. |+|++..++|.+++
T Consensus 103 ~fD~V~~~~~~~~~~~ 118 (256)
T 1nkv_A 103 KCDVAACVGATWIAGG 118 (256)
T ss_dssp CEEEEEEESCGGGTSS
T ss_pred CCCEEEECCChHhcCC
Confidence 3 99999999998875
No 32
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*
Probab=98.83 E-value=8e-09 Score=87.43 Aligned_cols=83 Identities=19% Similarity=0.314 Sum_probs=68.8
Q ss_pred HHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCC-CCCCC
Q 024046 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPEG 256 (273)
Q Consensus 185 ~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~-~~p~~ 256 (273)
...+++.++ ..+..+|||||||+|.++..+++.++ +++++|+ |.+++.++.. ++++++.+|+.+ +++.+
T Consensus 10 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 86 (239)
T 1xxl_A 10 LGLMIKTAE-CRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDD 86 (239)
T ss_dssp HHHHHHHHT-CCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTT
T ss_pred cchHHHHhC-cCCCCEEEEEccCcCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCC
Confidence 344566666 77889999999999999999999986 7899998 8888776542 689999999987 56543
Q ss_pred --CEEEecccccccCC
Q 024046 257 --DAILMKVGNFENYQ 270 (273)
Q Consensus 257 --D~~~l~~vLHd~~~ 270 (273)
|+|++..++|++++
T Consensus 87 ~fD~v~~~~~l~~~~~ 102 (239)
T 1xxl_A 87 SFDIITCRYAAHHFSD 102 (239)
T ss_dssp CEEEEEEESCGGGCSC
T ss_pred cEEEEEECCchhhccC
Confidence 99999999999976
No 33
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=98.83 E-value=3.7e-09 Score=87.99 Aligned_cols=77 Identities=17% Similarity=0.074 Sum_probs=64.1
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-----------CCceEEEcccCC-CCCC--CCEE
Q 024046 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----------AGVEHVGGNMFE-SVPE--GDAI 259 (273)
Q Consensus 195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-----------~ri~~~~gD~f~-~~p~--~D~~ 259 (273)
..+..+|||||||+|.++..+++++|..+++++|+ |.+++.++.. ++++++.+|+.. +.+. .|+|
T Consensus 27 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v 106 (217)
T 3jwh_A 27 QSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAA 106 (217)
T ss_dssp HTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEE
T ss_pred hcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEE
Confidence 34567999999999999999999999999999998 8888877542 289999999865 3432 3999
Q ss_pred EecccccccCCC
Q 024046 260 LMKVGNFENYQS 271 (273)
Q Consensus 260 ~l~~vLHd~~~~ 271 (273)
++..+||+++++
T Consensus 107 ~~~~~l~~~~~~ 118 (217)
T 3jwh_A 107 TVIEVIEHLDLS 118 (217)
T ss_dssp EEESCGGGCCHH
T ss_pred eeHHHHHcCCHH
Confidence 999999988754
No 34
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A
Probab=98.83 E-value=6.3e-09 Score=90.48 Aligned_cols=83 Identities=16% Similarity=0.211 Sum_probs=67.6
Q ss_pred HHhhcccCCCcceEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHHhCCCC-----CCceEEEcccCC-CCCCC-CE
Q 024046 188 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG-DA 258 (273)
Q Consensus 188 il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~-l~~~~~Dl-p~v~~~a~~~-----~ri~~~~gD~f~-~~p~~-D~ 258 (273)
+++.+....+..+|||||||+|.++..+++.+|. .+++++|+ |.+++.++.. .+++++.+|+.+ +.+.. |+
T Consensus 13 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~ 92 (284)
T 3gu3_A 13 LVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYDI 92 (284)
T ss_dssp HHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEEE
T ss_pred HHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcCCCeeE
Confidence 3343322567789999999999999999999995 89999998 7777766542 389999999997 45544 99
Q ss_pred EEecccccccCC
Q 024046 259 ILMKVGNFENYQ 270 (273)
Q Consensus 259 ~~l~~vLHd~~~ 270 (273)
|++..++|..+|
T Consensus 93 v~~~~~l~~~~~ 104 (284)
T 3gu3_A 93 AICHAFLLHMTT 104 (284)
T ss_dssp EEEESCGGGCSS
T ss_pred EEECChhhcCCC
Confidence 999999998876
No 35
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}
Probab=98.83 E-value=9.8e-09 Score=86.80 Aligned_cols=83 Identities=18% Similarity=0.293 Sum_probs=66.6
Q ss_pred HHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCCCCceEEEcccCC---CCCCC--CE
Q 024046 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE---SVPEG--DA 258 (273)
Q Consensus 185 ~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~ri~~~~gD~f~---~~p~~--D~ 258 (273)
...+...++.+++..+|||||||+|.++..+++. ..+++++|+ |.+++.++.. ++++.+|+.+ ++|.+ |+
T Consensus 29 ~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~--~~~~~~d~~~~~~~~~~~~fD~ 104 (240)
T 3dli_A 29 KARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEGK--FNVVKSDAIEYLKSLPDKYLDG 104 (240)
T ss_dssp HHHHGGGGGGTTTCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHTT--SEEECSCHHHHHHTSCTTCBSE
T ss_pred HHHHHHHHhhhcCCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHhh--cceeeccHHHHhhhcCCCCeeE
Confidence 3344444443556789999999999999999998 446899998 8888888754 9999999977 66654 99
Q ss_pred EEecccccccCCC
Q 024046 259 ILMKVGNFENYQS 271 (273)
Q Consensus 259 ~~l~~vLHd~~~~ 271 (273)
|++.++||+++++
T Consensus 105 i~~~~~l~~~~~~ 117 (240)
T 3dli_A 105 VMISHFVEHLDPE 117 (240)
T ss_dssp EEEESCGGGSCGG
T ss_pred EEECCchhhCCcH
Confidence 9999999999865
No 36
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=98.82 E-value=3.6e-09 Score=88.11 Aligned_cols=76 Identities=16% Similarity=0.108 Sum_probs=64.3
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-----------CCceEEEcccCC-CCCC--CCEEE
Q 024046 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----------AGVEHVGGNMFE-SVPE--GDAIL 260 (273)
Q Consensus 196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-----------~ri~~~~gD~f~-~~p~--~D~~~ 260 (273)
.+..+|||||||+|.++..+++++|..+++++|+ |.+++.++.. ++++++.+|+.. +.+. .|+|+
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~ 107 (219)
T 3jwg_A 28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAAT 107 (219)
T ss_dssp TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEE
T ss_pred cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEEE
Confidence 4568999999999999999999999999999998 8888877642 289999999965 3332 39999
Q ss_pred ecccccccCCC
Q 024046 261 MKVGNFENYQS 271 (273)
Q Consensus 261 l~~vLHd~~~~ 271 (273)
+..++|.++++
T Consensus 108 ~~~~l~~~~~~ 118 (219)
T 3jwg_A 108 VIEVIEHLDEN 118 (219)
T ss_dssp EESCGGGCCHH
T ss_pred EHHHHHhCCHH
Confidence 99999998754
No 37
>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}
Probab=98.82 E-value=6.2e-09 Score=89.68 Aligned_cols=72 Identities=13% Similarity=0.064 Sum_probs=63.5
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCCCCceEEEcccCC-CCCCC--CEEEecccccccC
Q 024046 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE-SVPEG--DAILMKVGNFENY 269 (273)
Q Consensus 196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~ri~~~~gD~f~-~~p~~--D~~~l~~vLHd~~ 269 (273)
+...+|||||||+|.++..|++.+. +++++|. |.+++.|+..++|+++.+|+-+ ++|.+ |+|++..++|..+
T Consensus 38 ~~~~~vLDvGcGtG~~~~~l~~~~~--~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~~ 113 (257)
T 4hg2_A 38 PARGDALDCGCGSGQASLGLAEFFE--RVHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQAMHWFD 113 (257)
T ss_dssp SCSSEEEEESCTTTTTHHHHHTTCS--EEEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSCCTTCC
T ss_pred CCCCCEEEEcCCCCHHHHHHHHhCC--EEEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEeeehhHhh
Confidence 3457899999999999999999875 5899998 8899999988999999999987 77765 9999999998664
No 38
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Probab=98.81 E-value=8.4e-09 Score=87.99 Aligned_cols=82 Identities=21% Similarity=0.370 Sum_probs=68.9
Q ss_pred HHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC----CCceEEEcccCC-CCCCC--C
Q 024046 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFE-SVPEG--D 257 (273)
Q Consensus 186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~----~ri~~~~gD~f~-~~p~~--D 257 (273)
..+++.++ ..+..+|||||||+|.++..+++++ ..+++++|+ |.+++.++.. ++++++.+|+.+ ++|.+ |
T Consensus 45 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD 122 (266)
T 3ujc_A 45 KKILSDIE-LNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNFD 122 (266)
T ss_dssp HHHTTTCC-CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCEE
T ss_pred HHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcEE
Confidence 45556655 6677899999999999999999998 679999998 8888777643 689999999988 66643 9
Q ss_pred EEEecccccccC
Q 024046 258 AILMKVGNFENY 269 (273)
Q Consensus 258 ~~~l~~vLHd~~ 269 (273)
+|++.+++|+++
T Consensus 123 ~v~~~~~l~~~~ 134 (266)
T 3ujc_A 123 LIYSRDAILALS 134 (266)
T ss_dssp EEEEESCGGGSC
T ss_pred EEeHHHHHHhcC
Confidence 999999999984
No 39
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*
Probab=98.80 E-value=2.4e-08 Score=87.98 Aligned_cols=85 Identities=18% Similarity=0.183 Sum_probs=69.0
Q ss_pred hHHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCC-CCC
Q 024046 184 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVP 254 (273)
Q Consensus 184 ~~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~-~~p 254 (273)
....+++.++.+.+..+|||||||+|.++..+++++ ..+++++|+ |.+++.|++. ++++++.+|+.+ +++
T Consensus 104 ~~~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 182 (312)
T 3vc1_A 104 QAEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFD 182 (312)
T ss_dssp HHHHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCC
T ss_pred HHHHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCC
Confidence 344566665435677899999999999999999987 578999998 8888877642 589999999998 566
Q ss_pred CC--CEEEecccccccC
Q 024046 255 EG--DAILMKVGNFENY 269 (273)
Q Consensus 255 ~~--D~~~l~~vLHd~~ 269 (273)
.+ |+|++..++|.++
T Consensus 183 ~~~fD~V~~~~~l~~~~ 199 (312)
T 3vc1_A 183 KGAVTASWNNESTMYVD 199 (312)
T ss_dssp TTCEEEEEEESCGGGSC
T ss_pred CCCEeEEEECCchhhCC
Confidence 43 9999999999873
No 40
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*
Probab=98.80 E-value=1.4e-08 Score=86.51 Aligned_cols=81 Identities=15% Similarity=0.247 Sum_probs=66.3
Q ss_pred HHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCC-CCCCC-
Q 024046 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPEG- 256 (273)
Q Consensus 187 ~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~-~~p~~- 256 (273)
.++..+..+++..+|||||||+|.++..+++++|. +++++|+ |.+++.++.. +|++++.+|+.. +++.+
T Consensus 36 ~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 114 (257)
T 3f4k_A 36 KAVSFINELTDDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEE 114 (257)
T ss_dssp HHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTC
T ss_pred HHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCC
Confidence 34455433566789999999999999999999996 8999998 8888776542 579999999976 56543
Q ss_pred -CEEEeccccccc
Q 024046 257 -DAILMKVGNFEN 268 (273)
Q Consensus 257 -D~~~l~~vLHd~ 268 (273)
|+|++..++|+.
T Consensus 115 fD~v~~~~~l~~~ 127 (257)
T 3f4k_A 115 LDLIWSEGAIYNI 127 (257)
T ss_dssp EEEEEEESCSCCC
T ss_pred EEEEEecChHhhc
Confidence 999999999987
No 41
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=98.79 E-value=1.7e-08 Score=85.03 Aligned_cols=82 Identities=16% Similarity=0.175 Sum_probs=65.6
Q ss_pred HHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC---CCceEEEcccCC-CCCCC--CEE
Q 024046 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AGVEHVGGNMFE-SVPEG--DAI 259 (273)
Q Consensus 187 ~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~---~ri~~~~gD~f~-~~p~~--D~~ 259 (273)
.+...++ .....+|||||||+|.++..++++.+ .+++++|. |.+++.++.. .+++++.+|+.+ +++.+ |+|
T Consensus 34 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v 111 (243)
T 3bkw_A 34 ALRAMLP-EVGGLRIVDLGCGFGWFCRWAHEHGA-SYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDLA 111 (243)
T ss_dssp HHHHHSC-CCTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEEE
T ss_pred HHHHhcc-ccCCCEEEEEcCcCCHHHHHHHHCCC-CeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceEE
Confidence 4555554 44678999999999999999999843 37999998 8888877643 579999999987 55543 999
Q ss_pred EecccccccCC
Q 024046 260 LMKVGNFENYQ 270 (273)
Q Consensus 260 ~l~~vLHd~~~ 270 (273)
++..++|++++
T Consensus 112 ~~~~~l~~~~~ 122 (243)
T 3bkw_A 112 YSSLALHYVED 122 (243)
T ss_dssp EEESCGGGCSC
T ss_pred EEeccccccch
Confidence 99999998864
No 42
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}
Probab=98.79 E-value=1.1e-08 Score=86.93 Aligned_cols=83 Identities=14% Similarity=0.163 Sum_probs=67.8
Q ss_pred HHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC---CCceEEEcccCC-CCCCC--CE
Q 024046 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AGVEHVGGNMFE-SVPEG--DA 258 (273)
Q Consensus 186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~---~ri~~~~gD~f~-~~p~~--D~ 258 (273)
+.+.+.++ ..+..+|||||||+|.++..+++..+. +++++|+ |.+++.++.. ++++++.+|+.. +++.+ |+
T Consensus 34 ~~l~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 111 (253)
T 3g5l_A 34 HELKKMLP-DFNQKTVLDLGCGFGWHCIYAAEHGAK-KVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNV 111 (253)
T ss_dssp HHHHTTCC-CCTTCEEEEETCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEE
T ss_pred HHHHHhhh-ccCCCEEEEECCCCCHHHHHHHHcCCC-EEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEE
Confidence 34555554 446789999999999999999999876 8999998 8888877643 789999999987 56543 99
Q ss_pred EEecccccccCC
Q 024046 259 ILMKVGNFENYQ 270 (273)
Q Consensus 259 ~~l~~vLHd~~~ 270 (273)
|++..++|++.+
T Consensus 112 v~~~~~l~~~~~ 123 (253)
T 3g5l_A 112 VLSSLALHYIAS 123 (253)
T ss_dssp EEEESCGGGCSC
T ss_pred EEEchhhhhhhh
Confidence 999999999854
No 43
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*
Probab=98.77 E-value=1.5e-08 Score=86.99 Aligned_cols=80 Identities=14% Similarity=0.187 Sum_probs=66.1
Q ss_pred HHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCC-CCCCC--
Q 024046 188 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPEG-- 256 (273)
Q Consensus 188 il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~-~~p~~-- 256 (273)
++..+..+.+..+|||||||+|.++..+++. |..+++++|+ |.+++.++.. ++|+++.+|+.+ +++.+
T Consensus 37 ~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 115 (267)
T 3kkz_A 37 ALSFIDNLTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEEL 115 (267)
T ss_dssp HHTTCCCCCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCE
T ss_pred HHHhcccCCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCE
Confidence 4444433567789999999999999999999 8889999998 8888776542 679999999987 55543
Q ss_pred CEEEeccccccc
Q 024046 257 DAILMKVGNFEN 268 (273)
Q Consensus 257 D~~~l~~vLHd~ 268 (273)
|+|++..++|.+
T Consensus 116 D~i~~~~~~~~~ 127 (267)
T 3kkz_A 116 DLIWSEGAIYNI 127 (267)
T ss_dssp EEEEESSCGGGT
T ss_pred EEEEEcCCceec
Confidence 999999999987
No 44
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}
Probab=98.77 E-value=3e-08 Score=86.73 Aligned_cols=73 Identities=21% Similarity=0.178 Sum_probs=63.7
Q ss_pred CCcceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhCCC--------CCCceEEEcccCC-CCCC------C--
Q 024046 196 QNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPS--------YAGVEHVGGNMFE-SVPE------G-- 256 (273)
Q Consensus 196 ~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~--------~~ri~~~~gD~f~-~~p~------~-- 256 (273)
.+..+|||||||+|.++..+++++ |..+++++|+ |.+++.|+. .++|+++.+|+.+ +++. +
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 114 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKI 114 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCe
Confidence 467899999999999999999998 9999999998 888887754 3689999999987 5444 3
Q ss_pred CEEEeccccccc
Q 024046 257 DAILMKVGNFEN 268 (273)
Q Consensus 257 D~~~l~~vLHd~ 268 (273)
|+|++..++|..
T Consensus 115 D~V~~~~~l~~~ 126 (299)
T 3g5t_A 115 DMITAVECAHWF 126 (299)
T ss_dssp EEEEEESCGGGS
T ss_pred eEEeHhhHHHHh
Confidence 999999999987
No 45
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*
Probab=98.76 E-value=1.8e-08 Score=88.22 Aligned_cols=83 Identities=17% Similarity=0.176 Sum_probs=69.6
Q ss_pred HHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCCCCCCC-
Q 024046 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPEG- 256 (273)
Q Consensus 186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~~p~~- 256 (273)
..+++.++ .++..+|||||||+|.++..+++++| .+++++|+ |.+++.|++. ++|+++.+|+..- +..
T Consensus 62 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~f 138 (302)
T 3hem_A 62 KLALDKLN-LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF-DEPV 138 (302)
T ss_dssp HHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC-CCCC
T ss_pred HHHHHHcC-CCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc-CCCc
Confidence 45566665 67778999999999999999999998 89999998 8888877642 4899999999764 544
Q ss_pred CEEEecccccccCCC
Q 024046 257 DAILMKVGNFENYQS 271 (273)
Q Consensus 257 D~~~l~~vLHd~~~~ 271 (273)
|+|++..++|+++|+
T Consensus 139 D~v~~~~~~~~~~d~ 153 (302)
T 3hem_A 139 DRIVSLGAFEHFADG 153 (302)
T ss_dssp SEEEEESCGGGTTCC
T ss_pred cEEEEcchHHhcCcc
Confidence 999999999999774
No 46
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A
Probab=98.74 E-value=1.3e-08 Score=85.73 Aligned_cols=74 Identities=11% Similarity=0.090 Sum_probs=61.8
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC--CCceEEEcccCCCCCCC--CEEEecccccccCC
Q 024046 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--AGVEHVGGNMFESVPEG--DAILMKVGNFENYQ 270 (273)
Q Consensus 196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~--~ri~~~~gD~f~~~p~~--D~~~l~~vLHd~~~ 270 (273)
.+..+|||||||+|.++..+++++| +++++|+ |.+++.|++. .+++++.+|+.+..+.+ |+|++.++||+.+|
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~ 118 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHIDD 118 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCSS
T ss_pred cCCCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHcCcCCcccEEEEhhHHHhhcC
Confidence 3557899999999999999999988 5899998 7888777643 28999999998754443 99999999999876
Q ss_pred C
Q 024046 271 S 271 (273)
Q Consensus 271 ~ 271 (273)
.
T Consensus 119 ~ 119 (250)
T 2p7i_A 119 P 119 (250)
T ss_dssp H
T ss_pred H
Confidence 3
No 47
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Probab=98.72 E-value=2.4e-08 Score=86.42 Aligned_cols=82 Identities=17% Similarity=0.147 Sum_probs=67.8
Q ss_pred HHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-CCceEEEcccCC-CCCCC-CEEEe
Q 024046 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFE-SVPEG-DAILM 261 (273)
Q Consensus 186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-~ri~~~~gD~f~-~~p~~-D~~~l 261 (273)
..+++.++ ..+..+|||||||+|.++..+++ |..+++++|+ |.+++.++.. ++++++.+|+.. +.+.. |+|++
T Consensus 47 ~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~ 123 (279)
T 3ccf_A 47 EDLLQLLN-PQPGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNYPHLHFDVADARNFRVDKPLDAVFS 123 (279)
T ss_dssp CHHHHHHC-CCTTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCCSSCEEEEEE
T ss_pred HHHHHHhC-CCCCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCcCCCcCEEEE
Confidence 34555555 56778999999999999999999 7889999998 8888877653 789999999987 44444 99999
Q ss_pred cccccccCC
Q 024046 262 KVGNFENYQ 270 (273)
Q Consensus 262 ~~vLHd~~~ 270 (273)
.+++|..+|
T Consensus 124 ~~~l~~~~d 132 (279)
T 3ccf_A 124 NAMLHWVKE 132 (279)
T ss_dssp ESCGGGCSC
T ss_pred cchhhhCcC
Confidence 999998765
No 48
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}
Probab=98.72 E-value=1.5e-08 Score=87.11 Aligned_cols=85 Identities=11% Similarity=0.178 Sum_probs=67.0
Q ss_pred HHHHhhcccCCCcceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hH------HHHhCCCC-------CCceEEEcc-c
Q 024046 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PH------VVQDAPSY-------AGVEHVGGN-M 249 (273)
Q Consensus 186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~~~Dl-p~------v~~~a~~~-------~ri~~~~gD-~ 249 (273)
..+++.++ ..+..+|||||||+|.++..+++++ |+.+++++|+ |. +++.|++. ++|+++.+| +
T Consensus 33 ~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 111 (275)
T 3bkx_A 33 LAIAEAWQ-VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNL 111 (275)
T ss_dssp HHHHHHHT-CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCT
T ss_pred HHHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChh
Confidence 34566665 6677899999999999999999997 8899999998 43 56655432 589999998 6
Q ss_pred CC---CCCCC--CEEEecccccccCCC
Q 024046 250 FE---SVPEG--DAILMKVGNFENYQS 271 (273)
Q Consensus 250 f~---~~p~~--D~~~l~~vLHd~~~~ 271 (273)
+. +++.+ |+|++..++|++++.
T Consensus 112 ~~~~~~~~~~~fD~v~~~~~l~~~~~~ 138 (275)
T 3bkx_A 112 SDDLGPIADQHFDRVVLAHSLWYFASA 138 (275)
T ss_dssp TTCCGGGTTCCCSEEEEESCGGGSSCH
T ss_pred hhccCCCCCCCEEEEEEccchhhCCCH
Confidence 54 34443 999999999998764
No 49
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=98.72 E-value=1.6e-08 Score=83.96 Aligned_cols=82 Identities=15% Similarity=0.152 Sum_probs=66.5
Q ss_pred HHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC--CCceEEEcccCC-CCCCC-CEEEe
Q 024046 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--AGVEHVGGNMFE-SVPEG-DAILM 261 (273)
Q Consensus 187 ~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~--~ri~~~~gD~f~-~~p~~-D~~~l 261 (273)
.+++.+. ..+..+|||||||+|.++..++++ ..+++++|. |.+++.++.. ++++++.+|+.+ +.+.. |+|++
T Consensus 36 ~~l~~~~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~fD~v~~ 112 (220)
T 3hnr_A 36 DILEDVV-NKSFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVPTSIDTIVS 112 (220)
T ss_dssp HHHHHHH-HTCCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCCSCCSEEEE
T ss_pred HHHHHhh-ccCCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCCCCeEEEEE
Confidence 3444444 446689999999999999999998 568999998 8888877653 489999999998 55543 99999
Q ss_pred cccccccCCC
Q 024046 262 KVGNFENYQS 271 (273)
Q Consensus 262 ~~vLHd~~~~ 271 (273)
.++||.++++
T Consensus 113 ~~~l~~~~~~ 122 (220)
T 3hnr_A 113 TYAFHHLTDD 122 (220)
T ss_dssp ESCGGGSCHH
T ss_pred CcchhcCChH
Confidence 9999998764
No 50
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A
Probab=98.71 E-value=4e-08 Score=83.68 Aligned_cols=74 Identities=9% Similarity=0.089 Sum_probs=62.1
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC-----CCCceEEEcccCC-CCCCC--CEEEecccc
Q 024046 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-----YAGVEHVGGNMFE-SVPEG--DAILMKVGN 265 (273)
Q Consensus 195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~ri~~~~gD~f~-~~p~~--D~~~l~~vL 265 (273)
..+..+|||||||+|.++..++++ ..+++++|. |.+++.++. .++++++.+|+.. +++.+ |+|++..++
T Consensus 37 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 114 (263)
T 2yqz_A 37 KGEEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLW 114 (263)
T ss_dssp SSSCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCG
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCch
Confidence 556789999999999999999988 467999998 777776653 2789999999977 55543 999999999
Q ss_pred cccCC
Q 024046 266 FENYQ 270 (273)
Q Consensus 266 Hd~~~ 270 (273)
|..+|
T Consensus 115 ~~~~~ 119 (263)
T 2yqz_A 115 HLVPD 119 (263)
T ss_dssp GGCTT
T ss_pred hhcCC
Confidence 98865
No 51
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36
Probab=98.71 E-value=9e-09 Score=85.20 Aligned_cols=80 Identities=14% Similarity=0.111 Sum_probs=63.6
Q ss_pred HHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC------------------CCCceEEEcc
Q 024046 188 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------------------YAGVEHVGGN 248 (273)
Q Consensus 188 il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------------------~~ri~~~~gD 248 (273)
+++.+. .+...+|||||||+|..+..|+++ ..+++++|+ |.+++.|++ .++|+++.+|
T Consensus 14 ~~~~l~-~~~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d 90 (203)
T 1pjz_A 14 YWSSLN-VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGD 90 (203)
T ss_dssp HHHHHC-CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEEC
T ss_pred HHHhcc-cCCCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECc
Confidence 334444 566789999999999999999998 468999998 888887753 2579999999
Q ss_pred cCC-CCC--CC-CEEEecccccccCC
Q 024046 249 MFE-SVP--EG-DAILMKVGNFENYQ 270 (273)
Q Consensus 249 ~f~-~~p--~~-D~~~l~~vLHd~~~ 270 (273)
+++ +.+ .. |+|+.+.++|..++
T Consensus 91 ~~~l~~~~~~~fD~v~~~~~l~~l~~ 116 (203)
T 1pjz_A 91 FFALTARDIGHCAAFYDRAAMIALPA 116 (203)
T ss_dssp CSSSTHHHHHSEEEEEEESCGGGSCH
T ss_pred cccCCcccCCCEEEEEECcchhhCCH
Confidence 998 443 23 99999999987764
No 52
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}
Probab=98.70 E-value=4.1e-08 Score=82.68 Aligned_cols=74 Identities=18% Similarity=0.233 Sum_probs=63.4
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC---CCceEEEcccCC-CCCCC--CEEEecccccc
Q 024046 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AGVEHVGGNMFE-SVPEG--DAILMKVGNFE 267 (273)
Q Consensus 195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~---~ri~~~~gD~f~-~~p~~--D~~~l~~vLHd 267 (273)
.++..+|||||||+|.++..++++ ..+++++|. |.+++.++.. ++++++.+|+.+ ++|.+ |+|++.+++|+
T Consensus 51 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 128 (242)
T 3l8d_A 51 VKKEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEW 128 (242)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTS
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhh
Confidence 346689999999999999999998 568999998 8888877654 789999999998 56643 99999999998
Q ss_pred cCC
Q 024046 268 NYQ 270 (273)
Q Consensus 268 ~~~ 270 (273)
.++
T Consensus 129 ~~~ 131 (242)
T 3l8d_A 129 TEE 131 (242)
T ss_dssp SSC
T ss_pred ccC
Confidence 865
No 53
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Probab=98.70 E-value=2.6e-08 Score=87.06 Aligned_cols=44 Identities=18% Similarity=0.341 Sum_probs=38.7
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC
Q 024046 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS 238 (273)
Q Consensus 195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~ 238 (273)
+....+|||||||+|.++..+++++|..+++++|+ |.+++.|+.
T Consensus 44 ~~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~ 88 (292)
T 3g07_A 44 WFRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQ 88 (292)
T ss_dssp GTTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHH
T ss_pred hcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence 33578999999999999999999999999999998 887876653
No 54
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=98.70 E-value=3.7e-08 Score=85.40 Aligned_cols=83 Identities=19% Similarity=0.172 Sum_probs=67.4
Q ss_pred HHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCCCCCCC-
Q 024046 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPEG- 256 (273)
Q Consensus 186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~~p~~- 256 (273)
..+++.++ ..+..+|||||||+|.++..++++++. +++++|+ |..++.++.. ++++++.+|+.. +|..
T Consensus 54 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~f 130 (287)
T 1kpg_A 54 DLALGKLG-LQPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQ-FDEPV 130 (287)
T ss_dssp HHHHTTTT-CCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGG-CCCCC
T ss_pred HHHHHHcC-CCCcCEEEEECCcccHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhh-CCCCe
Confidence 45566665 667789999999999999999988764 9999998 7877776542 589999999964 5543
Q ss_pred CEEEecccccccCCC
Q 024046 257 DAILMKVGNFENYQS 271 (273)
Q Consensus 257 D~~~l~~vLHd~~~~ 271 (273)
|+|++..+||+++++
T Consensus 131 D~v~~~~~l~~~~~~ 145 (287)
T 1kpg_A 131 DRIVSIGAFEHFGHE 145 (287)
T ss_dssp SEEEEESCGGGTCTT
T ss_pred eEEEEeCchhhcChH
Confidence 999999999998654
No 55
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42
Probab=98.70 E-value=1.8e-08 Score=85.43 Aligned_cols=83 Identities=14% Similarity=0.196 Sum_probs=67.4
Q ss_pred HHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC----CCceEEEcccCC-CCCCC--C
Q 024046 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFE-SVPEG--D 257 (273)
Q Consensus 186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~----~ri~~~~gD~f~-~~p~~--D 257 (273)
..+++.++ ..+..+|||||||+|.++..++++. ..+++++|. |.+++.++.. ++++++.+|+.. +++.+ |
T Consensus 83 ~~~l~~l~-~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD 160 (254)
T 1xtp_A 83 RNFIASLP-GHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYD 160 (254)
T ss_dssp HHHHHTST-TCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEE
T ss_pred HHHHHhhc-ccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCeE
Confidence 34556555 5567899999999999999999987 457899998 8888877642 689999999987 55543 9
Q ss_pred EEEecccccccCC
Q 024046 258 AILMKVGNFENYQ 270 (273)
Q Consensus 258 ~~~l~~vLHd~~~ 270 (273)
+|++.++||++++
T Consensus 161 ~v~~~~~l~~~~~ 173 (254)
T 1xtp_A 161 LIVIQWTAIYLTD 173 (254)
T ss_dssp EEEEESCGGGSCH
T ss_pred EEEEcchhhhCCH
Confidence 9999999999865
No 56
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=98.70 E-value=1.5e-08 Score=83.28 Aligned_cols=73 Identities=16% Similarity=0.120 Sum_probs=62.7
Q ss_pred cceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC-CCCceEEEcccCC-CCCCC--CEEEecccccccCCCC
Q 024046 198 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-YAGVEHVGGNMFE-SVPEG--DAILMKVGNFENYQSH 272 (273)
Q Consensus 198 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-~~ri~~~~gD~f~-~~p~~--D~~~l~~vLHd~~~~~ 272 (273)
..+|||||||+|.++..++++ ..+++++|. |.+++.++. .++++++.+|+.. +++.+ |+|++.++||.+++++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~ 119 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGE 119 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTT
T ss_pred CCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHH
Confidence 689999999999999999998 457999998 888888775 4789999999987 56543 9999999999997543
No 57
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Probab=98.68 E-value=9.4e-09 Score=90.29 Aligned_cols=77 Identities=17% Similarity=0.222 Sum_probs=65.7
Q ss_pred CCCcceEEEecCCccHHHHHHH-HHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCC-CCCCC-CEEEecc
Q 024046 195 FQNVERLVDVGGGFGVTLSMIT-SKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPEG-DAILMKV 263 (273)
Q Consensus 195 ~~~~~~vvDVGGG~G~~~~~l~-~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~-~~p~~-D~~~l~~ 263 (273)
+++..+|||||||+|.++..++ ..+|+.+++++|+ |.+++.|+.. +||+++.+|+.+ +.+.. |+|++..
T Consensus 116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~ 195 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSNG 195 (305)
T ss_dssp CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEECCS
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEECC
Confidence 5677899999999999999996 7899999999998 8888877642 569999999998 55544 9999999
Q ss_pred cccccCCC
Q 024046 264 GNFENYQS 271 (273)
Q Consensus 264 vLHd~~~~ 271 (273)
++|++++.
T Consensus 196 ~~~~~~~~ 203 (305)
T 3ocj_A 196 LNIYEPDD 203 (305)
T ss_dssp SGGGCCCH
T ss_pred hhhhcCCH
Confidence 99998764
No 58
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Probab=98.67 E-value=1e-08 Score=85.00 Aligned_cols=74 Identities=11% Similarity=0.153 Sum_probs=62.1
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC----CCCceEEEcccCCCCCC-C-CEEEecccccc
Q 024046 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFESVPE-G-DAILMKVGNFE 267 (273)
Q Consensus 195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~ri~~~~gD~f~~~p~-~-D~~~l~~vLHd 267 (273)
..+..+|||||||+|.++..+++... +++++|. |.+++.++. .++++++.+|+.+..+. . |+|++..++|+
T Consensus 49 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~ 126 (216)
T 3ofk_A 49 SGAVSNGLEIGCAAGAFTEKLAPHCK--RLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAELFDLIVVAEVLYY 126 (216)
T ss_dssp TSSEEEEEEECCTTSHHHHHHGGGEE--EEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCCCSCCEEEEEEESCGGG
T ss_pred cCCCCcEEEEcCCCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCCCCCCccEEEEccHHHh
Confidence 45678999999999999999999863 7899998 777877654 36899999999984344 3 99999999999
Q ss_pred cCC
Q 024046 268 NYQ 270 (273)
Q Consensus 268 ~~~ 270 (273)
.++
T Consensus 127 ~~~ 129 (216)
T 3ofk_A 127 LED 129 (216)
T ss_dssp SSS
T ss_pred CCC
Confidence 886
No 59
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Probab=98.66 E-value=3.4e-08 Score=89.67 Aligned_cols=75 Identities=17% Similarity=0.271 Sum_probs=64.8
Q ss_pred CCcceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhCCCC--------------CCceEEEcccCC-------C
Q 024046 196 QNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY--------------AGVEHVGGNMFE-------S 252 (273)
Q Consensus 196 ~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~~--------------~ri~~~~gD~f~-------~ 252 (273)
.+..+|||||||+|.++..+++.+ |..+++++|+ |.+++.|++. ++|+++.+|+.+ +
T Consensus 82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~ 161 (383)
T 4fsd_A 82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG 161 (383)
T ss_dssp GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence 356899999999999999999997 8899999998 8888877643 689999999987 5
Q ss_pred CCCC--CEEEecccccccCC
Q 024046 253 VPEG--DAILMKVGNFENYQ 270 (273)
Q Consensus 253 ~p~~--D~~~l~~vLHd~~~ 270 (273)
+|.+ |+|++..++|.++|
T Consensus 162 ~~~~~fD~V~~~~~l~~~~d 181 (383)
T 4fsd_A 162 VPDSSVDIVISNCVCNLSTN 181 (383)
T ss_dssp CCTTCEEEEEEESCGGGCSC
T ss_pred CCCCCEEEEEEccchhcCCC
Confidence 5553 99999999998875
No 60
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=98.66 E-value=8.5e-08 Score=78.92 Aligned_cols=80 Identities=14% Similarity=0.114 Sum_probs=66.1
Q ss_pred HHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCCCCC---CC
Q 024046 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVP---EG 256 (273)
Q Consensus 187 ~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~~~p---~~ 256 (273)
.++..++ ..+..+|||||||+|.++..+++.+|..+++++|. |.+++.|++. ++++++.+|+.+..+ ..
T Consensus 31 ~~l~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 109 (204)
T 3e05_A 31 VTLSKLR-LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPDP 109 (204)
T ss_dssp HHHHHTT-CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCCC
T ss_pred HHHHHcC-CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCCC
Confidence 3455555 66778999999999999999999999999999998 8888877642 789999999987544 24
Q ss_pred CEEEecccccc
Q 024046 257 DAILMKVGNFE 267 (273)
Q Consensus 257 D~~~l~~vLHd 267 (273)
|++++...+++
T Consensus 110 D~i~~~~~~~~ 120 (204)
T 3e05_A 110 DRVFIGGSGGM 120 (204)
T ss_dssp SEEEESCCTTC
T ss_pred CEEEECCCCcC
Confidence 99999887763
No 61
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*
Probab=98.66 E-value=4.5e-08 Score=79.74 Aligned_cols=82 Identities=13% Similarity=0.121 Sum_probs=65.5
Q ss_pred HHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCC-CCCCC-C
Q 024046 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPEG-D 257 (273)
Q Consensus 187 ~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~-~~p~~-D 257 (273)
.+++.++ ..+..+|||||||+|.++..+++. ..+++++|. |.+++.++.. ++++++.+|+.+ +.+.. |
T Consensus 23 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D 99 (199)
T 2xvm_A 23 EVLEAVK-VVKPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQYD 99 (199)
T ss_dssp HHHHHTT-TSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCCCCCEE
T ss_pred HHHHHhh-ccCCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCCCCCce
Confidence 3445555 445679999999999999999988 568999998 8888877642 479999999987 44444 9
Q ss_pred EEEecccccccCCC
Q 024046 258 AILMKVGNFENYQS 271 (273)
Q Consensus 258 ~~~l~~vLHd~~~~ 271 (273)
+|++..++|.++++
T Consensus 100 ~v~~~~~l~~~~~~ 113 (199)
T 2xvm_A 100 FILSTVVLMFLEAK 113 (199)
T ss_dssp EEEEESCGGGSCGG
T ss_pred EEEEcchhhhCCHH
Confidence 99999999988743
No 62
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}
Probab=98.66 E-value=1.2e-08 Score=81.46 Aligned_cols=78 Identities=17% Similarity=0.194 Sum_probs=65.0
Q ss_pred HHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC-CCCceEEEcccCCCCCCC--CEEEecc
Q 024046 188 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-YAGVEHVGGNMFESVPEG--DAILMKV 263 (273)
Q Consensus 188 il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-~~ri~~~~gD~f~~~p~~--D~~~l~~ 263 (273)
+++.++ ..+..+|||||||+|.++..+++++. +++++|. |.+++.++. .++++++.+| .+++.+ |+|++..
T Consensus 9 ~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~v~~~~~d--~~~~~~~~D~v~~~~ 83 (170)
T 3i9f_A 9 YLPNIF-EGKKGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVKEKFDSVITLSDP--KEIPDNSVDFILFAN 83 (170)
T ss_dssp THHHHH-SSCCEEEEEETCTTCTTHHHHHTTEE--EEEEECSCHHHHHHHHHHCTTSEEESSG--GGSCTTCEEEEEEES
T ss_pred HHHhcC-cCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEeCCHHHHHHHHHhCCCcEEEeCC--CCCCCCceEEEEEcc
Confidence 344455 66778999999999999999999985 8999998 888887765 4899999999 556653 9999999
Q ss_pred cccccCC
Q 024046 264 GNFENYQ 270 (273)
Q Consensus 264 vLHd~~~ 270 (273)
++|.+++
T Consensus 84 ~l~~~~~ 90 (170)
T 3i9f_A 84 SFHDMDD 90 (170)
T ss_dssp CSTTCSC
T ss_pred chhcccC
Confidence 9998865
No 63
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=98.65 E-value=3.4e-08 Score=85.63 Aligned_cols=80 Identities=20% Similarity=0.233 Sum_probs=64.9
Q ss_pred HHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCC-C-CCCC
Q 024046 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-S-VPEG 256 (273)
Q Consensus 187 ~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~-~-~p~~ 256 (273)
.++..++ .+..+|||||||+|.++..+++. ..+++++|+ |.+++.|+.. ++++++.+|+.+ + ++.+
T Consensus 60 ~~l~~~~--~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 135 (285)
T 4htf_A 60 RVLAEMG--PQKLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLET 135 (285)
T ss_dssp HHHHHTC--SSCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSS
T ss_pred HHHHhcC--CCCCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCC
Confidence 4455544 24579999999999999999998 668999998 8888877642 689999999987 3 4443
Q ss_pred --CEEEecccccccCC
Q 024046 257 --DAILMKVGNFENYQ 270 (273)
Q Consensus 257 --D~~~l~~vLHd~~~ 270 (273)
|+|++..+||.+++
T Consensus 136 ~fD~v~~~~~l~~~~~ 151 (285)
T 4htf_A 136 PVDLILFHAVLEWVAD 151 (285)
T ss_dssp CEEEEEEESCGGGCSC
T ss_pred CceEEEECchhhcccC
Confidence 99999999999876
No 64
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=98.64 E-value=8.9e-08 Score=76.90 Aligned_cols=69 Identities=16% Similarity=0.290 Sum_probs=59.1
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCCCCceEEEcccCCCCCCC--CEEEecccccccCCC
Q 024046 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFESVPEG--DAILMKVGNFENYQS 271 (273)
Q Consensus 197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~ri~~~~gD~f~~~p~~--D~~~l~~vLHd~~~~ 271 (273)
+..+|||||||+|.++..++++. +++++|+ |.+++. .++++++.+|++++++.+ |++++.-.+|..+++
T Consensus 23 ~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~---~~~~~~~~~d~~~~~~~~~fD~i~~n~~~~~~~~~ 94 (170)
T 3q87_B 23 EMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES---HRGGNLVRADLLCSINQESVDVVVFNPPYVPDTDD 94 (170)
T ss_dssp CSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT---CSSSCEEECSTTTTBCGGGCSEEEECCCCBTTCCC
T ss_pred CCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc---ccCCeEEECChhhhcccCCCCEEEECCCCccCCcc
Confidence 45699999999999999999998 8999998 777776 578999999999977743 999998888866554
No 65
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=98.63 E-value=4e-08 Score=78.64 Aligned_cols=78 Identities=22% Similarity=0.227 Sum_probs=62.6
Q ss_pred HHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCCCCCC----
Q 024046 188 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPE---- 255 (273)
Q Consensus 188 il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~~p~---- 255 (273)
++..++ ..+..+|||||||+|.++..+++.+|..+++++|. |.+++.++.. +++ ++.+|..+++|.
T Consensus 17 ~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~ 94 (178)
T 3hm2_A 17 AISALA-PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVPDN 94 (178)
T ss_dssp HHHHHC-CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCCSC
T ss_pred HHHHhc-ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccCCC
Confidence 445455 56778999999999999999999999999999998 7778776632 378 888998775553
Q ss_pred CCEEEecccccc
Q 024046 256 GDAILMKVGNFE 267 (273)
Q Consensus 256 ~D~~~l~~vLHd 267 (273)
.|++++...+|.
T Consensus 95 ~D~i~~~~~~~~ 106 (178)
T 3hm2_A 95 PDVIFIGGGLTA 106 (178)
T ss_dssp CSEEEECC-TTC
T ss_pred CCEEEECCcccH
Confidence 399999998876
No 66
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Probab=98.62 E-value=6.6e-08 Score=82.73 Aligned_cols=74 Identities=16% Similarity=0.167 Sum_probs=62.1
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC-CCCceEEEcccCC-CCCCC-CEEEecc-cccccC
Q 024046 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-YAGVEHVGGNMFE-SVPEG-DAILMKV-GNFENY 269 (273)
Q Consensus 195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-~~ri~~~~gD~f~-~~p~~-D~~~l~~-vLHd~~ 269 (273)
.++..+|||||||+|.++..++++.+ +++++|+ |.+++.|+. .++++++.+|+.+ +.+.. |+|++.. +||..+
T Consensus 48 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~~~ 125 (263)
T 3pfg_A 48 SPKAASLLDVACGTGMHLRHLADSFG--TVEGLELSADMLAIARRRNPDAVLHHGDMRDFSLGRRFSAVTCMFSSIGHLA 125 (263)
T ss_dssp CTTCCEEEEETCTTSHHHHHHTTTSS--EEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCCSCCEEEEEECTTGGGGSC
T ss_pred CCCCCcEEEeCCcCCHHHHHHHHcCC--eEEEEECCHHHHHHHHhhCCCCEEEECChHHCCccCCcCEEEEcCchhhhcC
Confidence 34568999999999999999999965 6899998 888888875 3689999999998 45444 9999997 999875
Q ss_pred C
Q 024046 270 Q 270 (273)
Q Consensus 270 ~ 270 (273)
+
T Consensus 126 ~ 126 (263)
T 3pfg_A 126 G 126 (263)
T ss_dssp H
T ss_pred C
Confidence 3
No 67
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*
Probab=98.62 E-value=5.8e-08 Score=88.46 Aligned_cols=80 Identities=13% Similarity=0.195 Sum_probs=64.1
Q ss_pred HHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC---------------CCCceEEEccc
Q 024046 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS---------------YAGVEHVGGNM 249 (273)
Q Consensus 186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~---------------~~ri~~~~gD~ 249 (273)
..+++.+. ..+..+|||||||+|..+..+++.+|.-+++++|+ |.+++.|+. .++|+++.||+
T Consensus 163 ~~il~~l~-l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~ 241 (438)
T 3uwp_A 163 AQMIDEIK-MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDF 241 (438)
T ss_dssp HHHHHHHC-CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCT
T ss_pred HHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcc
Confidence 34556665 77889999999999999999999998777999998 666655542 26899999999
Q ss_pred CC-CCC----CCCEEEeccccc
Q 024046 250 FE-SVP----EGDAILMKVGNF 266 (273)
Q Consensus 250 f~-~~p----~~D~~~l~~vLH 266 (273)
++ +++ .+|+|++.+++|
T Consensus 242 ~~lp~~d~~~~aDVVf~Nn~~F 263 (438)
T 3uwp_A 242 LSEEWRERIANTSVIFVNNFAF 263 (438)
T ss_dssp TSHHHHHHHHTCSEEEECCTTC
T ss_pred cCCccccccCCccEEEEccccc
Confidence 98 443 459999887765
No 68
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Probab=98.60 E-value=7.4e-08 Score=84.87 Aligned_cols=82 Identities=13% Similarity=0.195 Sum_probs=67.2
Q ss_pred HHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCCCCCCC-
Q 024046 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPEG- 256 (273)
Q Consensus 186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~~p~~- 256 (273)
..+++.++ ..+..+|||||||+|.++..+++++ ..+++++|+ |.+++.++.. ++++++.+|+.+ +|..
T Consensus 80 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~f 156 (318)
T 2fk8_A 80 DLNLDKLD-LKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED-FAEPV 156 (318)
T ss_dssp HHHHTTSC-CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG-CCCCC
T ss_pred HHHHHhcC-CCCcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHH-CCCCc
Confidence 45566665 6677899999999999999999997 568999998 8888776542 579999999865 4544
Q ss_pred CEEEecccccccCC
Q 024046 257 DAILMKVGNFENYQ 270 (273)
Q Consensus 257 D~~~l~~vLHd~~~ 270 (273)
|+|++..++|+.++
T Consensus 157 D~v~~~~~l~~~~~ 170 (318)
T 2fk8_A 157 DRIVSIEAFEHFGH 170 (318)
T ss_dssp SEEEEESCGGGTCG
T ss_pred CEEEEeChHHhcCH
Confidence 99999999998864
No 69
>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}
Probab=98.59 E-value=1.1e-07 Score=79.02 Aligned_cols=81 Identities=15% Similarity=0.222 Sum_probs=64.1
Q ss_pred HHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCCCCceEEEcccCC---CCCCC--CEE
Q 024046 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE---SVPEG--DAI 259 (273)
Q Consensus 186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~ri~~~~gD~f~---~~p~~--D~~ 259 (273)
+.+++.++ .+..+|||||||+|.++..+++. | .+++++|. |.+++.++..- .+++.+|+.. +++.+ |+|
T Consensus 23 ~~l~~~~~--~~~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~fD~v 97 (230)
T 3cc8_A 23 PNLLKHIK--KEWKEVLDIGCSSGALGAAIKEN-G-TRVSGIEAFPEAAEQAKEKL-DHVVLGDIETMDMPYEEEQFDCV 97 (230)
T ss_dssp HHHHTTCC--TTCSEEEEETCTTSHHHHHHHTT-T-CEEEEEESSHHHHHHHHTTS-SEEEESCTTTCCCCSCTTCEEEE
T ss_pred HHHHHHhc--cCCCcEEEeCCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHhC-CcEEEcchhhcCCCCCCCccCEE
Confidence 44555554 46689999999999999999998 5 88999998 88888776432 4789999975 34443 999
Q ss_pred EecccccccCCC
Q 024046 260 LMKVGNFENYQS 271 (273)
Q Consensus 260 ~l~~vLHd~~~~ 271 (273)
++.+++|++++.
T Consensus 98 ~~~~~l~~~~~~ 109 (230)
T 3cc8_A 98 IFGDVLEHLFDP 109 (230)
T ss_dssp EEESCGGGSSCH
T ss_pred EECChhhhcCCH
Confidence 999999988763
No 70
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}
Probab=98.59 E-value=4.6e-08 Score=82.76 Aligned_cols=75 Identities=16% Similarity=0.217 Sum_probs=62.5
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC---CCCceEEEcccCC-CCCC-------CCEEEec
Q 024046 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS---YAGVEHVGGNMFE-SVPE-------GDAILMK 262 (273)
Q Consensus 195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~---~~ri~~~~gD~f~-~~p~-------~D~~~l~ 262 (273)
..+..+|||||||+|.++..+++.++ +++++|. |.+++.++. ..+++++.+|+.+ +.+. .|+|++.
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~ 131 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMR 131 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEE
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEc
Confidence 45668999999999999999999999 6899998 888887754 2589999999998 2221 4899999
Q ss_pred ccccccCCC
Q 024046 263 VGNFENYQS 271 (273)
Q Consensus 263 ~vLHd~~~~ 271 (273)
.++|..+++
T Consensus 132 ~~~~~~~~~ 140 (245)
T 3ggd_A 132 TGFHHIPVE 140 (245)
T ss_dssp SSSTTSCGG
T ss_pred chhhcCCHH
Confidence 999998754
No 71
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*
Probab=98.57 E-value=5.2e-08 Score=84.61 Aligned_cols=80 Identities=16% Similarity=0.138 Sum_probs=63.7
Q ss_pred HHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC----------CCCceEEEcccCC-C---
Q 024046 188 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFE-S--- 252 (273)
Q Consensus 188 il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----------~~ri~~~~gD~f~-~--- 252 (273)
+...++ ..+..+|||||||+|.++..++++.+ +++++|+ |.+++.|+. .+++.+..+|+.. +
T Consensus 49 l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 125 (293)
T 3thr_A 49 LLGLLR-QHGCHRVLDVACGTGVDSIMLVEEGF--SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDV 125 (293)
T ss_dssp HHHHHH-HTTCCEEEETTCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHS
T ss_pred HHHHhc-ccCCCEEEEecCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCcccc
Confidence 333333 34668999999999999999999954 8999998 788877743 1678999999987 4
Q ss_pred CCCC--CEEEec-ccccccCC
Q 024046 253 VPEG--DAILMK-VGNFENYQ 270 (273)
Q Consensus 253 ~p~~--D~~~l~-~vLHd~~~ 270 (273)
++.+ |+|++. +++|++++
T Consensus 126 ~~~~~fD~V~~~g~~l~~~~~ 146 (293)
T 3thr_A 126 PAGDGFDAVICLGNSFAHLPD 146 (293)
T ss_dssp CCTTCEEEEEECTTCGGGSCC
T ss_pred ccCCCeEEEEEcChHHhhcCc
Confidence 4543 999998 99999887
No 72
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}
Probab=98.57 E-value=2.4e-08 Score=81.71 Aligned_cols=72 Identities=15% Similarity=0.079 Sum_probs=60.1
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCCCCCC-C-CEEEeccc
Q 024046 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPE-G-DAILMKVG 264 (273)
Q Consensus 195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~~p~-~-D~~~l~~v 264 (273)
++...+|||||||+|-++..+....|+.+.+..|. +.+++.++.+ .++++ .|.....|. . |++++.++
T Consensus 47 l~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~~~~~DvVLa~k~ 124 (200)
T 3fzg_A 47 IKHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVYKGTYDVVFLLKM 124 (200)
T ss_dssp SCCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHTTSEEEEEEEETC
T ss_pred cCCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCCCCCcChhhHhhH
Confidence 35688999999999999999999999999999998 8888877653 24555 788765444 3 99999999
Q ss_pred cccc
Q 024046 265 NFEN 268 (273)
Q Consensus 265 LHd~ 268 (273)
||.-
T Consensus 125 LHlL 128 (200)
T 3fzg_A 125 LPVL 128 (200)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 9986
No 73
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}
Probab=98.57 E-value=4e-08 Score=82.63 Aligned_cols=71 Identities=21% Similarity=0.159 Sum_probs=59.3
Q ss_pred ceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCCCCCC-C-CEEEeccccccc
Q 024046 199 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPE-G-DAILMKVGNFEN 268 (273)
Q Consensus 199 ~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~~p~-~-D~~~l~~vLHd~ 268 (273)
.+|||||||+|.++..+++ +..+++++|+ |.+++.++.. ++|+++.+|+.+..|. . |+|++..++|.+
T Consensus 68 ~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~ 145 (235)
T 3lcc_A 68 GRALVPGCGGGHDVVAMAS--PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFCAI 145 (235)
T ss_dssp EEEEEETCTTCHHHHHHCB--TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEEESSTTTS
T ss_pred CCEEEeCCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEEChhhhcC
Confidence 5999999999999999976 5778999998 8888776542 4699999999984454 3 999999999998
Q ss_pred CCC
Q 024046 269 YQS 271 (273)
Q Consensus 269 ~~~ 271 (273)
+++
T Consensus 146 ~~~ 148 (235)
T 3lcc_A 146 EPE 148 (235)
T ss_dssp CGG
T ss_pred CHH
Confidence 743
No 74
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Probab=98.56 E-value=1.5e-07 Score=81.35 Aligned_cols=75 Identities=20% Similarity=0.343 Sum_probs=61.3
Q ss_pred HHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCCCCCC-C-
Q 024046 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVPE-G- 256 (273)
Q Consensus 186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~~~p~-~- 256 (273)
..+++.++ .+..+|||||||+|.++..+++.+|+.+++++|. |.+++.++.+ ++++++.+|++++.+. .
T Consensus 100 ~~~l~~~~--~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~f 177 (276)
T 2b3t_A 100 EQALARLP--EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQF 177 (276)
T ss_dssp HHHHHHSC--SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCE
T ss_pred HHHHHhcc--cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcccCCc
Confidence 34444443 4567999999999999999999999999999998 8888877642 5799999999987654 3
Q ss_pred CEEEec
Q 024046 257 DAILMK 262 (273)
Q Consensus 257 D~~~l~ 262 (273)
|+|++.
T Consensus 178 D~Iv~n 183 (276)
T 2b3t_A 178 AMIVSN 183 (276)
T ss_dssp EEEEEC
T ss_pred cEEEEC
Confidence 999987
No 75
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=98.56 E-value=1.4e-07 Score=78.37 Aligned_cols=68 Identities=19% Similarity=0.317 Sum_probs=57.4
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCC-C--CCCC--CEEEeccc
Q 024046 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-S--VPEG--DAILMKVG 264 (273)
Q Consensus 197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~-~--~p~~--D~~~l~~v 264 (273)
+..+|||||||+|.++..+++.+|+.+++++|. |.+++.|+.. ++|+++.+|+.. + ++.+ |+|++...
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~ 120 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 120 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC
Confidence 467899999999999999999999999999998 8888877642 689999999987 3 5543 99987643
No 76
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*
Probab=98.55 E-value=6e-08 Score=81.71 Aligned_cols=69 Identities=14% Similarity=0.030 Sum_probs=59.0
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCCCCCC---CCEEEeccc
Q 024046 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPE---GDAILMKVG 264 (273)
Q Consensus 196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~~p~---~D~~~l~~v 264 (273)
++..+|+|||||+|.+++.+++..|..+++.+|. |..++.|+.+ ++|++..+|.++++|. .|++++..+
T Consensus 14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~IviaG~ 93 (225)
T 3kr9_A 14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIAGM 93 (225)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEEcCC
Confidence 4568999999999999999999999999999998 7888877642 6899999999998773 498887654
No 77
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}
Probab=98.54 E-value=1.6e-07 Score=78.27 Aligned_cols=75 Identities=19% Similarity=0.183 Sum_probs=62.2
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-----------CCceEEEcccCC-CCCCC--CEE
Q 024046 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----------AGVEHVGGNMFE-SVPEG--DAI 259 (273)
Q Consensus 195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-----------~ri~~~~gD~f~-~~p~~--D~~ 259 (273)
+++..+|||||||+|.++..++++ ..+++++|+ |.+++.++.. ++++++.+|+.. +++.+ |+|
T Consensus 28 ~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 105 (235)
T 3sm3_A 28 LQEDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFA 105 (235)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEE
Confidence 446789999999999999999998 668999998 7777766531 368999999987 56543 999
Q ss_pred EecccccccCCC
Q 024046 260 LMKVGNFENYQS 271 (273)
Q Consensus 260 ~l~~vLHd~~~~ 271 (273)
++..++|.+++.
T Consensus 106 ~~~~~l~~~~~~ 117 (235)
T 3sm3_A 106 VMQAFLTSVPDP 117 (235)
T ss_dssp EEESCGGGCCCH
T ss_pred EEcchhhcCCCH
Confidence 999999998763
No 78
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}
Probab=98.53 E-value=1e-07 Score=78.73 Aligned_cols=74 Identities=12% Similarity=0.147 Sum_probs=61.6
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCCCCceEEEcccCC-CCCCC-CEEEecccccccCC
Q 024046 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE-SVPEG-DAILMKVGNFENYQ 270 (273)
Q Consensus 195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~ri~~~~gD~f~-~~p~~-D~~~l~~vLHd~~~ 270 (273)
+++..+|||||||+|.++..++++ ..+++++|+ |.+++.++..-+++++.+|+.. +.+.. |+|++..+||++++
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~ 117 (211)
T 3e23_A 41 LPAGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRLGRPVRTMLFHQLDAIDAYDAVWAHACLLHVPR 117 (211)
T ss_dssp SCTTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHTSCCEECCGGGCCCCSCEEEEEECSCGGGSCH
T ss_pred cCCCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhcCCceEEeeeccCCCCCcEEEEEecCchhhcCH
Confidence 456789999999999999999998 568999998 8888887765578999999987 42233 99999999999873
No 79
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42
Probab=98.53 E-value=5.5e-08 Score=82.18 Aligned_cols=74 Identities=12% Similarity=0.071 Sum_probs=61.6
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCC-CCCCC--CEEEeccccc
Q 024046 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPEG--DAILMKVGNF 266 (273)
Q Consensus 197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~-~~p~~--D~~~l~~vLH 266 (273)
+..+|||||||+|.++..+++++ ..+++++|+ |.+++.++.. .+++++.+|+.. +.+.+ |+|++.++||
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 157 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG 157 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhh
Confidence 47899999999999999999987 568999998 8888877642 358999999876 45543 9999999999
Q ss_pred ccCCC
Q 024046 267 ENYQS 271 (273)
Q Consensus 267 d~~~~ 271 (273)
+++++
T Consensus 158 ~~~~~ 162 (241)
T 2ex4_A 158 HLTDQ 162 (241)
T ss_dssp GSCHH
T ss_pred hCCHH
Confidence 98763
No 80
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20
Probab=98.53 E-value=8.3e-08 Score=78.94 Aligned_cols=66 Identities=23% Similarity=0.249 Sum_probs=55.2
Q ss_pred cceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCCCCCC-C-CEEEecc
Q 024046 198 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVPE-G-DAILMKV 263 (273)
Q Consensus 198 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~~~p~-~-D~~~l~~ 263 (273)
..+|||||||+|.++..+++.+|..+++++|. |.+++.++.. ++++++.+|+.+..|. . |++++..
T Consensus 66 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~ 140 (207)
T 1jsx_A 66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRA 140 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSC
T ss_pred CCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCccCCcCEEEEec
Confidence 57999999999999999999999999999998 8887776542 4599999999985443 3 9998643
No 81
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}
Probab=98.52 E-value=7.6e-08 Score=81.32 Aligned_cols=69 Identities=17% Similarity=0.025 Sum_probs=58.9
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCCCCCC---CCEEEeccc
Q 024046 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPE---GDAILMKVG 264 (273)
Q Consensus 196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~~p~---~D~~~l~~v 264 (273)
++..+|+|||||+|.+++.+++..|..+++.+|+ |..++.|+.+ +||++..||.++.++. .|++++..+
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaGm 99 (230)
T 3lec_A 20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICGM 99 (230)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeCC
Confidence 4568999999999999999999999999999998 8888877642 6899999999996553 399887665
No 82
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Probab=98.52 E-value=2.1e-07 Score=77.06 Aligned_cols=82 Identities=13% Similarity=0.137 Sum_probs=66.6
Q ss_pred HHHhhcccCCCcceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhCCCC------CCceEEEcccCCCCC-C-C
Q 024046 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVP-E-G 256 (273)
Q Consensus 187 ~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~~~p-~-~ 256 (273)
.++..+. ..+..+|||||||+|.++..+++.. |+.+++++|. |..++.++.. ++++++.+|+..+.+ . .
T Consensus 68 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 146 (215)
T 2yxe_A 68 MMCELLD-LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLAP 146 (215)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGCC
T ss_pred HHHHhhC-CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCCC
Confidence 3445444 5667899999999999999999998 7789999998 8888777642 579999999977665 3 3
Q ss_pred -CEEEecccccccC
Q 024046 257 -DAILMKVGNFENY 269 (273)
Q Consensus 257 -D~~~l~~vLHd~~ 269 (273)
|+|++..++|+.+
T Consensus 147 fD~v~~~~~~~~~~ 160 (215)
T 2yxe_A 147 YDRIYTTAAGPKIP 160 (215)
T ss_dssp EEEEEESSBBSSCC
T ss_pred eeEEEECCchHHHH
Confidence 9999999998765
No 83
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}
Probab=98.52 E-value=2.4e-07 Score=76.38 Aligned_cols=81 Identities=17% Similarity=0.223 Sum_probs=65.5
Q ss_pred HHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCCCCC-C-C-
Q 024046 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVP-E-G- 256 (273)
Q Consensus 187 ~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~~~p-~-~- 256 (273)
.++..++ ..+..+|||||||+|.++..+++. ..+++++|. |.+++.++.. ++++++.+|.++..+ . .
T Consensus 68 ~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 144 (210)
T 3lbf_A 68 RMTELLE-LTPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPF 144 (210)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCE
T ss_pred HHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCCc
Confidence 3445555 667789999999999999999999 578999998 8888777642 579999999998544 2 3
Q ss_pred CEEEecccccccCC
Q 024046 257 DAILMKVGNFENYQ 270 (273)
Q Consensus 257 D~~~l~~vLHd~~~ 270 (273)
|+|++..++|..++
T Consensus 145 D~i~~~~~~~~~~~ 158 (210)
T 3lbf_A 145 DAIIVTAAPPEIPT 158 (210)
T ss_dssp EEEEESSBCSSCCT
T ss_pred cEEEEccchhhhhH
Confidence 99999999988764
No 84
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}
Probab=98.51 E-value=3.4e-07 Score=76.00 Aligned_cols=70 Identities=17% Similarity=0.175 Sum_probs=54.6
Q ss_pred hhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHh----CCC------CCCceEEEcccCC-CCCCC-
Q 024046 190 EHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQD----APS------YAGVEHVGGNMFE-SVPEG- 256 (273)
Q Consensus 190 ~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~----a~~------~~ri~~~~gD~f~-~~p~~- 256 (273)
..++ ..+..+|||||||+|.++..+++.+|..+++++|+ |.+++. ++. .++++++.+|+.+ +++.+
T Consensus 21 ~~l~-~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~ 99 (218)
T 3mq2_A 21 EQLR-SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGV 99 (218)
T ss_dssp HHHH-TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCE
T ss_pred HHhh-ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCC
Confidence 3344 56678999999999999999999999999999998 664442 332 2589999999998 55543
Q ss_pred CEEE
Q 024046 257 DAIL 260 (273)
Q Consensus 257 D~~~ 260 (273)
|.++
T Consensus 100 d~v~ 103 (218)
T 3mq2_A 100 GELH 103 (218)
T ss_dssp EEEE
T ss_pred CEEE
Confidence 6665
No 85
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*
Probab=98.51 E-value=1.3e-07 Score=79.67 Aligned_cols=84 Identities=19% Similarity=0.276 Sum_probs=68.0
Q ss_pred HHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCCCCCC-C
Q 024046 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVPE-G 256 (273)
Q Consensus 185 ~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~~~p~-~ 256 (273)
...+++.++ ..+..+|||||||+|.++..+++..| .+++++|. |.+++.|+.. ++++++.+|+..++|. +
T Consensus 80 ~~~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 157 (235)
T 1jg1_A 80 VAIMLEIAN-LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKA 157 (235)
T ss_dssp HHHHHHHHT-CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred HHHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCCCC
Confidence 345556555 66778999999999999999999998 88999997 8888777642 5699999999666663 3
Q ss_pred --CEEEecccccccCC
Q 024046 257 --DAILMKVGNFENYQ 270 (273)
Q Consensus 257 --D~~~l~~vLHd~~~ 270 (273)
|+|++..++|.+.+
T Consensus 158 ~fD~Ii~~~~~~~~~~ 173 (235)
T 1jg1_A 158 PYDVIIVTAGAPKIPE 173 (235)
T ss_dssp CEEEEEECSBBSSCCH
T ss_pred CccEEEECCcHHHHHH
Confidence 99999999987653
No 86
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}
Probab=98.50 E-value=9.2e-08 Score=81.47 Aligned_cols=69 Identities=16% Similarity=0.162 Sum_probs=58.6
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCCCCCC---CCEEEeccc
Q 024046 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPE---GDAILMKVG 264 (273)
Q Consensus 196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~~p~---~D~~~l~~v 264 (273)
++..+|+|||||+|.+++.+++..|..+++.+|+ |..++.|+.+ +||++..+|.++.++. .|++++.++
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iviagm 99 (244)
T 3gnl_A 20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAGM 99 (244)
T ss_dssp CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeCC
Confidence 4568999999999999999999999999999998 8888877652 6899999999996552 499887654
No 87
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=98.49 E-value=2.2e-07 Score=84.18 Aligned_cols=80 Identities=25% Similarity=0.241 Sum_probs=64.9
Q ss_pred HHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC---------CCceEEEcccCCCCCCC
Q 024046 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---------AGVEHVGGNMFESVPEG 256 (273)
Q Consensus 187 ~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~---------~ri~~~~gD~f~~~p~~ 256 (273)
.+++.++ .....+|||||||+|.++..+++++|..+++++|. |.+++.++.+ .+++++.+|++++++.+
T Consensus 213 ~ll~~l~-~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~~ 291 (375)
T 4dcm_A 213 FFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPF 291 (375)
T ss_dssp HHHHTCC-CSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCTT
T ss_pred HHHHhCc-ccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCCC
Confidence 4566665 44458999999999999999999999999999998 8888877642 25888999999987753
Q ss_pred --CEEEecccccc
Q 024046 257 --DAILMKVGNFE 267 (273)
Q Consensus 257 --D~~~l~~vLHd 267 (273)
|+|++.-.+|.
T Consensus 292 ~fD~Ii~nppfh~ 304 (375)
T 4dcm_A 292 RFNAVLCNPPFHQ 304 (375)
T ss_dssp CEEEEEECCCC--
T ss_pred CeeEEEECCCccc
Confidence 99999877774
No 88
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}
Probab=98.49 E-value=1.6e-07 Score=81.35 Aligned_cols=82 Identities=11% Similarity=0.106 Sum_probs=65.4
Q ss_pred HHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcccCC-CCCCC-CE
Q 024046 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG-DA 258 (273)
Q Consensus 187 ~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-----~ri~~~~gD~f~-~~p~~-D~ 258 (273)
.+++.++ .....+|||||||+|.++..++++ ..+++++|. |.+++.++.. -+++++.+|+.+ +.+.. |+
T Consensus 111 ~~~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~ 187 (286)
T 3m70_A 111 DVVDAAK-IISPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQENYDF 187 (286)
T ss_dssp HHHHHHH-HSCSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCCCSCEEE
T ss_pred HHHHHhh-ccCCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccccCCccE
Confidence 4445454 346789999999999999999998 568999998 8788776642 289999999998 34444 99
Q ss_pred EEecccccccCCC
Q 024046 259 ILMKVGNFENYQS 271 (273)
Q Consensus 259 ~~l~~vLHd~~~~ 271 (273)
|++..++|..+++
T Consensus 188 i~~~~~~~~~~~~ 200 (286)
T 3m70_A 188 IVSTVVFMFLNRE 200 (286)
T ss_dssp EEECSSGGGSCGG
T ss_pred EEEccchhhCCHH
Confidence 9999999988764
No 89
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=98.49 E-value=4.5e-07 Score=73.17 Aligned_cols=80 Identities=18% Similarity=0.199 Sum_probs=64.6
Q ss_pred HHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-CCceEEEcccCC-CCCC-C-CEEEe
Q 024046 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFE-SVPE-G-DAILM 261 (273)
Q Consensus 187 ~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-~ri~~~~gD~f~-~~p~-~-D~~~l 261 (273)
.++..+ .++..+|||||||+|.++..+++. ..+++++|. |.+++.++.. ++++++.+|+.+ ++|. . |++++
T Consensus 38 ~~l~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~ 113 (195)
T 3cgg_A 38 RLIDAM--APRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVS 113 (195)
T ss_dssp HHHHHH--SCTTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEE
T ss_pred HHHHHh--ccCCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEE
Confidence 455554 356789999999999999999998 568999998 8888877653 679999999998 5664 3 99999
Q ss_pred c-ccccccCC
Q 024046 262 K-VGNFENYQ 270 (273)
Q Consensus 262 ~-~vLHd~~~ 270 (273)
. .++|..++
T Consensus 114 ~~~~~~~~~~ 123 (195)
T 3cgg_A 114 AGNVMGFLAE 123 (195)
T ss_dssp CCCCGGGSCH
T ss_pred CCcHHhhcCh
Confidence 8 88887653
No 90
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=98.49 E-value=1.5e-07 Score=75.42 Aligned_cols=75 Identities=12% Similarity=0.104 Sum_probs=61.2
Q ss_pred HHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCCCCCC--CC
Q 024046 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVPE--GD 257 (273)
Q Consensus 187 ~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~~~p~--~D 257 (273)
.++..++ ..+..+|||||||+|.++..+++ |..+++++|. |.+++.++.. ++++++.+|+.+++|. .|
T Consensus 26 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D 102 (183)
T 2yxd_A 26 VSIGKLN-LNKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDKLEFN 102 (183)
T ss_dssp HHHHHHC-CCTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGGCCCS
T ss_pred HHHHHcC-CCCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccCCCCc
Confidence 3444444 55678999999999999999999 8889999998 8888777643 6899999999986664 39
Q ss_pred EEEeccc
Q 024046 258 AILMKVG 264 (273)
Q Consensus 258 ~~~l~~v 264 (273)
++++..+
T Consensus 103 ~i~~~~~ 109 (183)
T 2yxd_A 103 KAFIGGT 109 (183)
T ss_dssp EEEECSC
T ss_pred EEEECCc
Confidence 9998876
No 91
>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*
Probab=98.47 E-value=1.2e-07 Score=82.31 Aligned_cols=75 Identities=19% Similarity=0.119 Sum_probs=60.7
Q ss_pred CcceEEEecCCccH----HHHHHHHHCC----CCeEEEeec-hHHHHhCCCC----------------------------
Q 024046 197 NVERLVDVGGGFGV----TLSMITSKYP----QIKAVNFDL-PHVVQDAPSY---------------------------- 239 (273)
Q Consensus 197 ~~~~vvDVGGG~G~----~~~~l~~~~P----~l~~~~~Dl-p~v~~~a~~~---------------------------- 239 (273)
+..+|+|+|||+|. +++.|++.+| +.++++.|+ +.+++.|+..
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 35789999999998 6777888766 468999998 8888877531
Q ss_pred ---------CCceEEEcccCC-CCC--CC-CEEEecccccccCCC
Q 024046 240 ---------AGVEHVGGNMFE-SVP--EG-DAILMKVGNFENYQS 271 (273)
Q Consensus 240 ---------~ri~~~~gD~f~-~~p--~~-D~~~l~~vLHd~~~~ 271 (273)
++|+|..+|+.+ ++| .. |+|++++||+.++++
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~ 229 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKT 229 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHH
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHH
Confidence 269999999998 466 23 999999999988754
No 92
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Probab=98.47 E-value=2.1e-07 Score=76.45 Aligned_cols=74 Identities=11% Similarity=0.105 Sum_probs=59.4
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcccCC-CCCCC--CEEEecccc
Q 024046 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG--DAILMKVGN 265 (273)
Q Consensus 195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-----~ri~~~~gD~f~-~~p~~--D~~~l~~vL 265 (273)
..+..+|||||||+|.++..++.. +..+++++|. |.+++.++.. .+++++.+|+.+ ++|.+ |+|++..++
T Consensus 21 ~~~~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 99 (209)
T 2p8j_A 21 SNLDKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTI 99 (209)
T ss_dssp SSSCSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCG
T ss_pred cCCCCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChH
Confidence 445689999999999985555544 5679999998 8888877642 679999999987 56643 999999999
Q ss_pred cccC
Q 024046 266 FENY 269 (273)
Q Consensus 266 Hd~~ 269 (273)
|+++
T Consensus 100 ~~~~ 103 (209)
T 2p8j_A 100 FHMR 103 (209)
T ss_dssp GGSC
T ss_pred HhCC
Confidence 9885
No 93
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=98.47 E-value=1.4e-07 Score=92.25 Aligned_cols=83 Identities=18% Similarity=0.150 Sum_probs=67.2
Q ss_pred HHhhcccCCCcceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhCCC------------CCCceEEEcccCC-C
Q 024046 188 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPS------------YAGVEHVGGNMFE-S 252 (273)
Q Consensus 188 il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~------------~~ri~~~~gD~f~-~ 252 (273)
+++.+. ..+..+|||||||+|.++..+++.. |..+++++|+ |.+++.|++ .++|+++.+|+.. +
T Consensus 713 LLelL~-~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp 791 (950)
T 3htx_A 713 ALKHIR-ESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFD 791 (950)
T ss_dssp HHHHHH-HSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCC
T ss_pred HHHHhc-ccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCC
Confidence 344443 3467899999999999999999999 5678999998 888887754 2679999999988 5
Q ss_pred CCC-C-CEEEecccccccCCC
Q 024046 253 VPE-G-DAILMKVGNFENYQS 271 (273)
Q Consensus 253 ~p~-~-D~~~l~~vLHd~~~~ 271 (273)
.+. . |+|++..++|+++++
T Consensus 792 ~~d~sFDlVV~~eVLeHL~dp 812 (950)
T 3htx_A 792 SRLHDVDIGTCLEVIEHMEED 812 (950)
T ss_dssp TTSCSCCEEEEESCGGGSCHH
T ss_pred cccCCeeEEEEeCchhhCChH
Confidence 553 3 999999999998764
No 94
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}
Probab=98.47 E-value=2e-07 Score=78.08 Aligned_cols=73 Identities=18% Similarity=0.227 Sum_probs=60.7
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-CCceEEEcccCC-CCCCC-CEEE-ecccccccCC
Q 024046 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFE-SVPEG-DAIL-MKVGNFENYQ 270 (273)
Q Consensus 196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-~ri~~~~gD~f~-~~p~~-D~~~-l~~vLHd~~~ 270 (273)
.+..+|||||||+|.++..++++++ +++++|+ |.+++.++.. ++++++.+|+.+ +.+.. |+|+ ...++|..++
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~~ 116 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRLPDATLHQGDMRDFRLGRKFSAVVSMFSSVGYLKT 116 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCCSSCEEEEEECTTGGGGCCS
T ss_pred CCCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHcccCCCCcEEEEcCchHhhcCC
Confidence 4668999999999999999999988 7899998 8888887754 789999999987 44444 9999 4558887754
No 95
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=98.47 E-value=2.6e-07 Score=78.55 Aligned_cols=75 Identities=16% Similarity=0.240 Sum_probs=63.1
Q ss_pred HHHHhhcccCCCcceEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCCCCCCC
Q 024046 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPEG 256 (273)
Q Consensus 186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~-~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~~p~~ 256 (273)
..++..++ ..+..+|||+|||+|.++..+++. .|..+++++|+ |..++.|++. +|++++.+|+.++++.+
T Consensus 83 ~~i~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 161 (255)
T 3mb5_A 83 ALIVAYAG-ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEEE 161 (255)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCCC
T ss_pred HHHHHhhC-CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCCC
Confidence 34555555 667889999999999999999999 89999999998 8888877642 56999999999887754
Q ss_pred --CEEEe
Q 024046 257 --DAILM 261 (273)
Q Consensus 257 --D~~~l 261 (273)
|++++
T Consensus 162 ~~D~v~~ 168 (255)
T 3mb5_A 162 NVDHVIL 168 (255)
T ss_dssp SEEEEEE
T ss_pred CcCEEEE
Confidence 99887
No 96
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Probab=98.46 E-value=2e-07 Score=81.45 Aligned_cols=81 Identities=10% Similarity=0.071 Sum_probs=62.2
Q ss_pred HHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC---------CCceEEEcccCC-CC
Q 024046 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---------AGVEHVGGNMFE-SV 253 (273)
Q Consensus 185 ~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~---------~ri~~~~gD~f~-~~ 253 (273)
...+++.++ . ...+|||||||+|.++..++++ ..+++++|+ |.+++.|++. ++|+++.+|+.+ +.
T Consensus 72 ~~~~~~~~~-~-~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~ 147 (299)
T 3g2m_A 72 AREFATRTG-P-VSGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL 147 (299)
T ss_dssp HHHHHHHHC-C-CCSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC
T ss_pred HHHHHHhhC-C-CCCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc
Confidence 455666654 3 3459999999999999999998 467999998 8888877642 579999999998 45
Q ss_pred CCC-CEEEec-ccccccC
Q 024046 254 PEG-DAILMK-VGNFENY 269 (273)
Q Consensus 254 p~~-D~~~l~-~vLHd~~ 269 (273)
+.. |+|++. .++|..+
T Consensus 148 ~~~fD~v~~~~~~~~~~~ 165 (299)
T 3g2m_A 148 DKRFGTVVISSGSINELD 165 (299)
T ss_dssp SCCEEEEEECHHHHTTSC
T ss_pred CCCcCEEEECCcccccCC
Confidence 544 988865 6666554
No 97
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}
Probab=98.46 E-value=4.1e-07 Score=76.43 Aligned_cols=72 Identities=22% Similarity=0.272 Sum_probs=59.2
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcccCC-CCCCC-CEEEecc-cc
Q 024046 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG-DAILMKV-GN 265 (273)
Q Consensus 195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-----~ri~~~~gD~f~-~~p~~-D~~~l~~-vL 265 (273)
++...+|||||||+|.++..+++. .+++++|. |.+++.|+.. .+++++.+|+.+ +.+.. |+|++.. ++
T Consensus 31 ~~~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~ 107 (243)
T 3d2l_A 31 VEPGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPEPVDAITILCDSL 107 (243)
T ss_dssp SCTTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCSSCEEEEEECTTGG
T ss_pred cCCCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCCCCcCEEEEeCCch
Confidence 344589999999999999999988 68999998 8888877642 579999999987 45544 9999886 88
Q ss_pred cccC
Q 024046 266 FENY 269 (273)
Q Consensus 266 Hd~~ 269 (273)
|+..
T Consensus 108 ~~~~ 111 (243)
T 3d2l_A 108 NYLQ 111 (243)
T ss_dssp GGCC
T ss_pred hhcC
Confidence 8764
No 98
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=98.45 E-value=5.8e-08 Score=79.87 Aligned_cols=76 Identities=22% Similarity=0.279 Sum_probs=51.0
Q ss_pred HHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcccCCCCCC-----
Q 024046 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFESVPE----- 255 (273)
Q Consensus 187 ~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-----~ri~~~~gD~f~~~p~----- 255 (273)
.+++.+....+..+|||||||+|.++..+++.+|+.+++++|+ |.+++.++.. .+++++.+|++++++.
T Consensus 20 ~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 99 (215)
T 4dzr_A 20 EAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAERG 99 (215)
T ss_dssp HHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHHHHHHHHHTT
T ss_pred HHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhhcc
Confidence 3444444235678999999999999999999999999999999 8888888754 1789999999885542
Q ss_pred C--CEEEec
Q 024046 256 G--DAILMK 262 (273)
Q Consensus 256 ~--D~~~l~ 262 (273)
+ |+|++.
T Consensus 100 ~~fD~i~~n 108 (215)
T 4dzr_A 100 RPWHAIVSN 108 (215)
T ss_dssp CCBSEEEEC
T ss_pred CcccEEEEC
Confidence 3 999984
No 99
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=98.45 E-value=8.4e-07 Score=75.12 Aligned_cols=80 Identities=20% Similarity=0.299 Sum_probs=60.5
Q ss_pred HHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcccCC-CCCCC-CE
Q 024046 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG-DA 258 (273)
Q Consensus 187 ~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-----~ri~~~~gD~f~-~~p~~-D~ 258 (273)
.++.... ..+..+|||||||+|.++..++++ ..+++++|+ |.+++.|+.. .+++++.+|+.+ +.+.. |+
T Consensus 32 ~~~~~~~-~~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~ 108 (252)
T 1wzn_A 32 EIFKEDA-KREVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDA 108 (252)
T ss_dssp HHHHHTC-SSCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEE
T ss_pred HHHHHhc-ccCCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccCCCccE
Confidence 3444443 345689999999999999999987 568999998 8888877642 479999999987 45544 99
Q ss_pred EEec-ccccccC
Q 024046 259 ILMK-VGNFENY 269 (273)
Q Consensus 259 ~~l~-~vLHd~~ 269 (273)
|++. ..+|.++
T Consensus 109 v~~~~~~~~~~~ 120 (252)
T 1wzn_A 109 VTMFFSTIMYFD 120 (252)
T ss_dssp EEECSSGGGGSC
T ss_pred EEEcCCchhcCC
Confidence 9876 4455443
No 100
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=98.45 E-value=1.8e-07 Score=77.49 Aligned_cols=80 Identities=25% Similarity=0.244 Sum_probs=63.8
Q ss_pred HHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCCCCceEEEcccCC----CCC-CC--CE
Q 024046 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE----SVP-EG--DA 258 (273)
Q Consensus 187 ~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~ri~~~~gD~f~----~~p-~~--D~ 258 (273)
.++..+. .....+|||||||+|.++..+++. ..+++++|+ |.+++.++...+++++.+|+.. +.+ .. |+
T Consensus 43 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ 119 (227)
T 3e8s_A 43 AILLAIL-GRQPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDL 119 (227)
T ss_dssp HHHHHHH-HTCCSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEE
T ss_pred HHHHHhh-cCCCCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCccE
Confidence 4455554 345589999999999999999998 568999998 8889888877889999999875 222 22 99
Q ss_pred EEecccccccCC
Q 024046 259 ILMKVGNFENYQ 270 (273)
Q Consensus 259 ~~l~~vLHd~~~ 270 (273)
|++..++| +.+
T Consensus 120 v~~~~~l~-~~~ 130 (227)
T 3e8s_A 120 ICANFALL-HQD 130 (227)
T ss_dssp EEEESCCC-SSC
T ss_pred EEECchhh-hhh
Confidence 99999999 543
No 101
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13
Probab=98.44 E-value=1.7e-07 Score=81.11 Aligned_cols=74 Identities=15% Similarity=0.192 Sum_probs=58.7
Q ss_pred HHHhhcccCCCcceEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHHhCCC----C---CCceEEEcccCCCCCCC-
Q 024046 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHVVQDAPS----Y---AGVEHVGGNMFESVPEG- 256 (273)
Q Consensus 187 ~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~-~P~l~~~~~Dl-p~v~~~a~~----~---~ri~~~~gD~f~~~p~~- 256 (273)
.++..++ +.+..+|||+|||+|.++..+++. +|..+++++|+ |.+++.|+. . ++++++.+|+.++++.+
T Consensus 101 ~~~~~~~-~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~ 179 (275)
T 1yb2_A 101 YIIMRCG-LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQM 179 (275)
T ss_dssp -----CC-CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCC
T ss_pred HHHHHcC-CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCcCCC
Confidence 4455555 667789999999999999999998 89999999998 887776653 2 57999999999877753
Q ss_pred -CEEEe
Q 024046 257 -DAILM 261 (273)
Q Consensus 257 -D~~~l 261 (273)
|+|++
T Consensus 180 fD~Vi~ 185 (275)
T 1yb2_A 180 YDAVIA 185 (275)
T ss_dssp EEEEEE
T ss_pred ccEEEE
Confidence 99987
No 102
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53
Probab=98.44 E-value=2.1e-07 Score=77.46 Aligned_cols=66 Identities=18% Similarity=0.291 Sum_probs=55.0
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC------CCCceEEEcccCC-C--CCCC--CEEEec
Q 024046 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFE-S--VPEG--DAILMK 262 (273)
Q Consensus 197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~ri~~~~gD~f~-~--~p~~--D~~~l~ 262 (273)
...+|||||||+|.++..+++.+|+.+++++|. +.+++.|+. .++|+++.+|+.. + ++.+ |.+++.
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~ 115 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLN 115 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEE
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEE
Confidence 457899999999999999999999999999998 777777654 2679999999987 3 5543 887754
No 103
>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*
Probab=98.43 E-value=1.7e-07 Score=80.33 Aligned_cols=74 Identities=9% Similarity=0.048 Sum_probs=60.0
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC-----------------------CCCceEEEcccCC
Q 024046 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-----------------------YAGVEHVGGNMFE 251 (273)
Q Consensus 196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----------------------~~ri~~~~gD~f~ 251 (273)
....+|||||||+|..+..|++. ..+++++|+ |.+++.|++ .++|+++.+|+++
T Consensus 67 ~~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~ 144 (252)
T 2gb4_A 67 QSGLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD 144 (252)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred CCCCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence 45689999999999999999988 568999998 888876632 2579999999998
Q ss_pred -CCC--CC-CEEEecccccccCCC
Q 024046 252 -SVP--EG-DAILMKVGNFENYQS 271 (273)
Q Consensus 252 -~~p--~~-D~~~l~~vLHd~~~~ 271 (273)
+.+ .. |+|+.+.+||..+++
T Consensus 145 l~~~~~~~FD~V~~~~~l~~l~~~ 168 (252)
T 2gb4_A 145 LPRANIGKFDRIWDRGALVAINPG 168 (252)
T ss_dssp GGGGCCCCEEEEEESSSTTTSCGG
T ss_pred CCcccCCCEEEEEEhhhhhhCCHH
Confidence 443 33 999999899877654
No 104
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Probab=98.42 E-value=2.3e-07 Score=77.66 Aligned_cols=66 Identities=12% Similarity=0.281 Sum_probs=54.8
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC------CCCceEEEcccCCC----CCCC--CEEEec
Q 024046 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFES----VPEG--DAILMK 262 (273)
Q Consensus 197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~ri~~~~gD~f~~----~p~~--D~~~l~ 262 (273)
...+|||||||+|.++..+++++|+.+++++|. +..++.|+. .++|+++.+|..+. +|.+ |.+++.
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~ 112 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLF 112 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEE
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEe
Confidence 567999999999999999999999999999998 777776643 26799999998762 5654 888765
No 105
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}
Probab=98.42 E-value=1.4e-07 Score=81.26 Aligned_cols=83 Identities=10% Similarity=0.002 Sum_probs=60.2
Q ss_pred HHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCCCCceEEEcccCC-CC------CC-C
Q 024046 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE-SV------PE-G 256 (273)
Q Consensus 186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~ri~~~~gD~f~-~~------p~-~ 256 (273)
..+++.++ ..+..+|||||||+|.++..++++. .+++++|+ |.+++.|++.-+-.++.+|+.. +. +. .
T Consensus 35 ~~il~~l~-l~~g~~VLDlGcGtG~~a~~La~~g--~~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~f 111 (261)
T 3iv6_A 35 ENDIFLEN-IVPGSTVAVIGASTRFLIEKALERG--ASVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGHF 111 (261)
T ss_dssp HHHHHTTT-CCTTCEEEEECTTCHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTCC
T ss_pred HHHHHhcC-CCCcCEEEEEeCcchHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCCCc
Confidence 45566665 6677899999999999999999974 57999998 8888887653111134455543 22 22 3
Q ss_pred CEEEecccccccCCC
Q 024046 257 DAILMKVGNFENYQS 271 (273)
Q Consensus 257 D~~~l~~vLHd~~~~ 271 (273)
|+|++..++|+++++
T Consensus 112 D~Vv~~~~l~~~~~~ 126 (261)
T 3iv6_A 112 DFVLNDRLINRFTTE 126 (261)
T ss_dssp SEEEEESCGGGSCHH
T ss_pred cEEEEhhhhHhCCHH
Confidence 999999999988654
No 106
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=98.42 E-value=5.1e-07 Score=72.77 Aligned_cols=79 Identities=15% Similarity=0.275 Sum_probs=63.0
Q ss_pred HHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------C--CceEEEcccCCCCCC-
Q 024046 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------A--GVEHVGGNMFESVPE- 255 (273)
Q Consensus 186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~--ri~~~~gD~f~~~p~- 255 (273)
..+++.+. ..+..+|||||||+|.++..+++. ..+++++|+ |.+++.++.. + |++++.+|+.++.+.
T Consensus 42 ~~l~~~~~-~~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 118 (194)
T 1dus_A 42 KILVENVV-VDKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDR 118 (194)
T ss_dssp HHHHHHCC-CCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTS
T ss_pred HHHHHHcc-cCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccccC
Confidence 34555555 557789999999999999999998 678999998 8887776542 3 599999999986664
Q ss_pred C-CEEEecccccc
Q 024046 256 G-DAILMKVGNFE 267 (273)
Q Consensus 256 ~-D~~~l~~vLHd 267 (273)
. |+|++...+|.
T Consensus 119 ~~D~v~~~~~~~~ 131 (194)
T 1dus_A 119 KYNKIITNPPIRA 131 (194)
T ss_dssp CEEEEEECCCSTT
T ss_pred CceEEEECCCccc
Confidence 3 99999887764
No 107
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}
Probab=98.41 E-value=2.7e-07 Score=82.53 Aligned_cols=81 Identities=21% Similarity=0.287 Sum_probs=64.9
Q ss_pred HHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcccCCCCCCC-CE
Q 024046 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFESVPEG-DA 258 (273)
Q Consensus 186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-----~ri~~~~gD~f~~~p~~-D~ 258 (273)
..+++.++ .....+|||||||+|.++..+++++|+.+++++|. |.+++.++.. ..++++.+|++...+.. |+
T Consensus 186 ~~ll~~l~-~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~ 264 (343)
T 2pjd_A 186 QLLLSTLT-PHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEVKGRFDM 264 (343)
T ss_dssp HHHHHHSC-TTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTCCSCEEE
T ss_pred HHHHHhcC-cCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccccCCeeE
Confidence 34556654 34457899999999999999999999999999998 7778777642 34788999998754444 99
Q ss_pred EEecccccc
Q 024046 259 ILMKVGNFE 267 (273)
Q Consensus 259 ~~l~~vLHd 267 (273)
|++...+|.
T Consensus 265 Iv~~~~~~~ 273 (343)
T 2pjd_A 265 IISNPPFHD 273 (343)
T ss_dssp EEECCCCCS
T ss_pred EEECCCccc
Confidence 999998885
No 108
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43
Probab=98.41 E-value=4.9e-07 Score=75.89 Aligned_cols=72 Identities=13% Similarity=0.133 Sum_probs=60.2
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcccCC-CCCCC-CEEEecc-cccc
Q 024046 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG-DAILMKV-GNFE 267 (273)
Q Consensus 197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-----~ri~~~~gD~f~-~~p~~-D~~~l~~-vLHd 267 (273)
+..+|||||||+|.++..++++. .+++++|. |.+++.++.. .+++++.+|+.+ +.+.. |+|++.. +||+
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~~--~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~ 114 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPKF--KNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNY 114 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGGS--SEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGGG
T ss_pred CCCeEEEeCCCCCHHHHHHHHCC--CcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCccCCceEEEEcCccccc
Confidence 56899999999999999999984 57999998 8888877653 279999999987 55544 9999998 9998
Q ss_pred cCC
Q 024046 268 NYQ 270 (273)
Q Consensus 268 ~~~ 270 (273)
+++
T Consensus 115 ~~~ 117 (246)
T 1y8c_A 115 IID 117 (246)
T ss_dssp CCS
T ss_pred cCC
Confidence 843
No 109
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}
Probab=98.41 E-value=3.5e-07 Score=85.50 Aligned_cols=85 Identities=20% Similarity=0.230 Sum_probs=66.9
Q ss_pred HHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhCCCC-------CCceEEEcccCC-CCCCC
Q 024046 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFE-SVPEG 256 (273)
Q Consensus 185 ~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~~-------~ri~~~~gD~f~-~~p~~ 256 (273)
.+.+++.+. ..+..+|||||||+|.+++.+++ .|..+++++|+..+++.|++. ++|+++.+|+.+ ++|+.
T Consensus 147 ~~~il~~l~-~~~~~~VLDiGcGtG~la~~la~-~~~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~~ 224 (480)
T 3b3j_A 147 QRAILQNHT-DFKDKIVLDVGCGSGILSFFAAQ-AGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQ 224 (480)
T ss_dssp HHHHHHTGG-GTTTCEEEEESCSTTHHHHHHHH-TTCSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSC
T ss_pred HHHHHHhhh-hcCCCEEEEecCcccHHHHHHHH-cCCCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCccCCC
Confidence 345666655 44668999999999999998887 688899999996677666531 789999999998 66665
Q ss_pred -CEEEecccccccCCC
Q 024046 257 -DAILMKVGNFENYQS 271 (273)
Q Consensus 257 -D~~~l~~vLHd~~~~ 271 (273)
|+|++..++|.+.++
T Consensus 225 fD~Ivs~~~~~~~~~e 240 (480)
T 3b3j_A 225 VDIIISEPMGYMLFNE 240 (480)
T ss_dssp EEEEECCCCHHHHTCH
T ss_pred eEEEEEeCchHhcCcH
Confidence 999998777776543
No 110
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}
Probab=98.41 E-value=7.9e-07 Score=72.64 Aligned_cols=62 Identities=15% Similarity=0.174 Sum_probs=49.4
Q ss_pred HHHhhcccCCCcceEEEecCCccHHHHHHHHHCC--CCeEEEeechHHHHhCCCCCCceEEEcccCCC
Q 024046 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP--QIKAVNFDLPHVVQDAPSYAGVEHVGGNMFES 252 (273)
Q Consensus 187 ~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P--~l~~~~~Dlp~v~~~a~~~~ri~~~~gD~f~~ 252 (273)
.+.+.+..+.+..+|||||||+|.++..+++++| ..+++++|+... ...++++++.+|+.+.
T Consensus 12 ~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~----~~~~~v~~~~~d~~~~ 75 (201)
T 2plw_A 12 ELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIM----DPIPNVYFIQGEIGKD 75 (201)
T ss_dssp HHHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCC----CCCTTCEEEECCTTTT
T ss_pred HHHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCcc----CCCCCceEEEccccch
Confidence 4455554345678999999999999999999998 689999998542 1246899999999873
No 111
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41
Probab=98.40 E-value=4.9e-07 Score=75.19 Aligned_cols=66 Identities=20% Similarity=0.140 Sum_probs=56.4
Q ss_pred cceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCCCCceEEEcccCC-CCCCC--CEEEecccccccCC
Q 024046 198 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE-SVPEG--DAILMKVGNFENYQ 270 (273)
Q Consensus 198 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~ri~~~~gD~f~-~~p~~--D~~~l~~vLHd~~~ 270 (273)
..+|||||||+|.++..++++ +++|. |.+++.++.. +++++.+|+.. +++.+ |+|++.++||..++
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~-~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~ 117 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR-GVFVLKGTAENLPLKDESFDFALMVTTICFVDD 117 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT-TCEEEECBTTBCCSCTTCEEEEEEESCGGGSSC
T ss_pred CCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc-CCEEEEcccccCCCCCCCeeEEEEcchHhhccC
Confidence 689999999999999998776 89998 8888877755 89999999977 55543 99999999998865
No 112
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}
Probab=98.40 E-value=3.2e-07 Score=75.44 Aligned_cols=72 Identities=14% Similarity=0.069 Sum_probs=60.0
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC----CCceEEEcccCC-CCCCC--CEEEecccccc
Q 024046 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFE-SVPEG--DAILMKVGNFE 267 (273)
Q Consensus 196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~----~ri~~~~gD~f~-~~p~~--D~~~l~~vLHd 267 (273)
.+..+|||||||+|.++..+++..+. +++++|. |.+++.++.. ++++++.+|+.+ +++.+ |+|++..++|.
T Consensus 41 ~~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~ 119 (215)
T 2pxx_A 41 RPEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLDA 119 (215)
T ss_dssp CTTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHHH
T ss_pred CCCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchhh
Confidence 56689999999999999999999776 8999998 7777776542 689999999988 66643 99999888865
Q ss_pred c
Q 024046 268 N 268 (273)
Q Consensus 268 ~ 268 (273)
.
T Consensus 120 ~ 120 (215)
T 2pxx_A 120 L 120 (215)
T ss_dssp H
T ss_pred h
Confidence 4
No 113
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*
Probab=98.40 E-value=3e-07 Score=80.15 Aligned_cols=65 Identities=17% Similarity=0.198 Sum_probs=56.0
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCCCCC-CC---CEEEec
Q 024046 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVP-EG---DAILMK 262 (273)
Q Consensus 197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~~p-~~---D~~~l~ 262 (273)
...+|||||||+|.++..+++. |+.+++++|+ |.+++.|+.+ +||+++.+|++++.+ .. |+|+..
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~~~f~~~D~Ivsn 199 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSN 199 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEEC
T ss_pred CCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcccccCCCCEEEEc
Confidence 4569999999999999999999 9999999998 8888877642 479999999998654 35 999885
No 114
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}
Probab=98.39 E-value=8.3e-07 Score=73.39 Aligned_cols=68 Identities=18% Similarity=0.145 Sum_probs=52.7
Q ss_pred HHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhCCCCCCceEEEcccCC-CCCCC--CEEEec
Q 024046 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFE-SVPEG--DAILMK 262 (273)
Q Consensus 186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~~~ri~~~~gD~f~-~~p~~--D~~~l~ 262 (273)
..++..+....+..+|||||||+|.++..+. .+++++|.... +++++.+|+.+ +++.+ |+|++.
T Consensus 56 ~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~--------~~~~~~~d~~~~~~~~~~fD~v~~~ 122 (215)
T 2zfu_A 56 DRIARDLRQRPASLVVADFGCGDCRLASSIR-----NPVHCFDLASL--------DPRVTVCDMAQVPLEDESVDVAVFC 122 (215)
T ss_dssp HHHHHHHHTSCTTSCEEEETCTTCHHHHHCC-----SCEEEEESSCS--------STTEEESCTTSCSCCTTCEEEEEEE
T ss_pred HHHHHHHhccCCCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC--------CceEEEeccccCCCCCCCEeEEEEe
Confidence 3455554434566899999999999998883 57899998432 68999999988 56643 999999
Q ss_pred cccc
Q 024046 263 VGNF 266 (273)
Q Consensus 263 ~vLH 266 (273)
.+||
T Consensus 123 ~~l~ 126 (215)
T 2zfu_A 123 LSLM 126 (215)
T ss_dssp SCCC
T ss_pred hhcc
Confidence 9998
No 115
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}
Probab=98.39 E-value=3.1e-07 Score=75.65 Aligned_cols=76 Identities=17% Similarity=0.104 Sum_probs=61.2
Q ss_pred HHhhcccCCCcceEEEecCCccHHHHHHHHHCCCC-eEEEeec-hHHHHhCCCC-CCceEEEcccCC-CCCCC--CEEEe
Q 024046 188 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQI-KAVNFDL-PHVVQDAPSY-AGVEHVGGNMFE-SVPEG--DAILM 261 (273)
Q Consensus 188 il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l-~~~~~Dl-p~v~~~a~~~-~ri~~~~gD~f~-~~p~~--D~~~l 261 (273)
++..+. .+..+|||||||+|.++..+ .. +++++|. |.+++.++.. ++++++.+|+.+ +++.+ |+|++
T Consensus 29 ~l~~~~--~~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~ 101 (211)
T 2gs9_A 29 ALKGLL--PPGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLL 101 (211)
T ss_dssp HHHTTC--CCCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEE
T ss_pred HHHHhc--CCCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEE
Confidence 444443 36689999999999999887 44 8999998 8888877654 789999999987 56653 99999
Q ss_pred cccccccCC
Q 024046 262 KVGNFENYQ 270 (273)
Q Consensus 262 ~~vLHd~~~ 270 (273)
.+++|+.++
T Consensus 102 ~~~l~~~~~ 110 (211)
T 2gs9_A 102 FTTLEFVED 110 (211)
T ss_dssp ESCTTTCSC
T ss_pred cChhhhcCC
Confidence 999998865
No 116
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}
Probab=98.38 E-value=5.1e-07 Score=76.48 Aligned_cols=67 Identities=15% Similarity=0.368 Sum_probs=54.1
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCC------------CCCCceEEEcccCC--C--CCCC--
Q 024046 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAP------------SYAGVEHVGGNMFE--S--VPEG-- 256 (273)
Q Consensus 196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~------------~~~ri~~~~gD~f~--~--~p~~-- 256 (273)
.+..+|||||||+|.++..+++++|+.+++++|+ +.+++.|+ ..++|+++.+|+.. + ++.+
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 124 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL 124 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence 3567899999999999999999999999999998 77776442 23689999999986 3 5554
Q ss_pred CEEEec
Q 024046 257 DAILMK 262 (273)
Q Consensus 257 D~~~l~ 262 (273)
|.+++.
T Consensus 125 D~v~~~ 130 (235)
T 3ckk_A 125 TKMFFL 130 (235)
T ss_dssp EEEEEE
T ss_pred eEEEEe
Confidence 888753
No 117
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=98.37 E-value=8.4e-07 Score=74.17 Aligned_cols=81 Identities=14% Similarity=0.223 Sum_probs=65.1
Q ss_pred HHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC----CCceEEEcccCCCCC-C-C-C
Q 024046 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFESVP-E-G-D 257 (273)
Q Consensus 186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~----~ri~~~~gD~f~~~p-~-~-D 257 (273)
..++..+. ..+..+|||||||+|.++..+++.. .+++++|. |.+++.++.. ++++++.+|+.+..+ . . |
T Consensus 60 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~fD 136 (231)
T 1vbf_A 60 IFMLDELD-LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYD 136 (231)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEE
T ss_pred HHHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCcc
Confidence 34555555 5677899999999999999999997 67999998 8888777642 389999999988544 2 3 9
Q ss_pred EEEecccccccC
Q 024046 258 AILMKVGNFENY 269 (273)
Q Consensus 258 ~~~l~~vLHd~~ 269 (273)
+|++..++|+..
T Consensus 137 ~v~~~~~~~~~~ 148 (231)
T 1vbf_A 137 RVVVWATAPTLL 148 (231)
T ss_dssp EEEESSBBSSCC
T ss_pred EEEECCcHHHHH
Confidence 999999998765
No 118
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A
Probab=98.37 E-value=1.8e-06 Score=72.50 Aligned_cols=66 Identities=14% Similarity=0.244 Sum_probs=53.7
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhC----CCCCCceEEEcccCCC-----CCCC-CEEE
Q 024046 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDA----PSYAGVEHVGGNMFES-----VPEG-DAIL 260 (273)
Q Consensus 195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a----~~~~ri~~~~gD~f~~-----~p~~-D~~~ 260 (273)
+.+..+|||||||+|.++..+++.+|..+++++|. |.+++.+ ...++++++.+|+..+ ++.. |+++
T Consensus 72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~ 148 (230)
T 1fbn_A 72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIY 148 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEEE
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEEE
Confidence 55678999999999999999999999888999998 7766544 3347899999999862 3333 9987
No 119
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A
Probab=98.37 E-value=8.3e-07 Score=79.53 Aligned_cols=85 Identities=20% Similarity=0.243 Sum_probs=66.0
Q ss_pred HHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhCCCC-------CCceEEEcccCC-CCCCC-
Q 024046 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFE-SVPEG- 256 (273)
Q Consensus 186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~~-------~ri~~~~gD~f~-~~p~~- 256 (273)
..+++.+. ..+..+|||||||+|.++..++++ +..+++++|...+++.|+.. ++|+++.+|+.+ +.|+.
T Consensus 40 ~~i~~~l~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~~ 117 (348)
T 2y1w_A 40 RAILQNHT-DFKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQV 117 (348)
T ss_dssp HHHHHTGG-GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCE
T ss_pred HHHHhccc-cCCcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCce
Confidence 34555555 456689999999999999998886 66789999995566655431 689999999988 56654
Q ss_pred CEEEecccccccCCCC
Q 024046 257 DAILMKVGNFENYQSH 272 (273)
Q Consensus 257 D~~~l~~vLHd~~~~~ 272 (273)
|+|+...++|.+.++.
T Consensus 118 D~Ivs~~~~~~~~~~~ 133 (348)
T 2y1w_A 118 DIIISEPMGYMLFNER 133 (348)
T ss_dssp EEEEECCCBTTBTTTS
T ss_pred eEEEEeCchhcCChHH
Confidence 9999998888776653
No 120
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Probab=98.36 E-value=4.9e-07 Score=76.78 Aligned_cols=58 Identities=16% Similarity=0.388 Sum_probs=48.9
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCC--------------CCCCceEEEcccCCC
Q 024046 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAP--------------SYAGVEHVGGNMFES 252 (273)
Q Consensus 195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~--------------~~~ri~~~~gD~f~~ 252 (273)
.++..+|||||||+|.++..+++.+|+.+++++|. +.+++.++ ..++++++.+|.++.
T Consensus 47 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~ 119 (246)
T 2vdv_E 47 MTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKF 119 (246)
T ss_dssp BSCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSC
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHH
Confidence 34668999999999999999999999999999997 77776553 226799999999873
No 121
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=98.34 E-value=3.8e-07 Score=76.84 Aligned_cols=69 Identities=20% Similarity=0.343 Sum_probs=57.7
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCCCCC----CC-CEEEe
Q 024046 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVP----EG-DAILM 261 (273)
Q Consensus 195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~~p----~~-D~~~l 261 (273)
..+..+|||||||+|..+..+++.+|..+++++|+ |.+++.|+.. ++|+++.+|+.+..| .. |+|++
T Consensus 69 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~ 148 (232)
T 3ntv_A 69 MNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFI 148 (232)
T ss_dssp HHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEE
T ss_pred hcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEE
Confidence 44678999999999999999999999999999998 8888877642 589999999988544 33 99986
Q ss_pred cc
Q 024046 262 KV 263 (273)
Q Consensus 262 ~~ 263 (273)
..
T Consensus 149 ~~ 150 (232)
T 3ntv_A 149 DA 150 (232)
T ss_dssp ET
T ss_pred cC
Confidence 53
No 122
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=98.34 E-value=4e-07 Score=80.47 Aligned_cols=69 Identities=19% Similarity=0.189 Sum_probs=57.6
Q ss_pred cceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC------CCCceEEEcccCC---CCCC-C-CEEEecccc
Q 024046 198 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFE---SVPE-G-DAILMKVGN 265 (273)
Q Consensus 198 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~ri~~~~gD~f~---~~p~-~-D~~~l~~vL 265 (273)
..+|||||||.|.++..+++.+|+.+++++|+ |.|++.|++ .+|++++.+|.++ ..+. . |+|++--..
T Consensus 90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~ 169 (317)
T 3gjy_A 90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFA 169 (317)
T ss_dssp GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCST
T ss_pred CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCC
Confidence 34999999999999999999999999999999 999988764 2689999999876 3443 3 999885444
Q ss_pred c
Q 024046 266 F 266 (273)
Q Consensus 266 H 266 (273)
|
T Consensus 170 ~ 170 (317)
T 3gjy_A 170 G 170 (317)
T ss_dssp T
T ss_pred c
Confidence 4
No 123
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}
Probab=98.33 E-value=9.7e-07 Score=72.46 Aligned_cols=72 Identities=14% Similarity=0.125 Sum_probs=58.3
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCCCCCCC-CEEEeccccc
Q 024046 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVPEG-DAILMKVGNF 266 (273)
Q Consensus 195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~~~p~~-D~~~l~~vLH 266 (273)
..+..+|||||||+|.++..+++ +|..+++++|. |.+++.|+.. ++++++.+|+....+.. |+|++...+|
T Consensus 58 ~~~~~~vLDiG~G~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~fD~i~~~~~~~ 136 (205)
T 3grz_A 58 MVKPLTVADVGTGSGILAIAAHK-LGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADVDGKFDLIVANILAE 136 (205)
T ss_dssp CSSCCEEEEETCTTSHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTCCSCEEEEEEESCHH
T ss_pred ccCCCEEEEECCCCCHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccCCCCceEEEECCcHH
Confidence 34668999999999999999776 57789999998 8888877642 34999999998855554 9999987776
Q ss_pred c
Q 024046 267 E 267 (273)
Q Consensus 267 d 267 (273)
.
T Consensus 137 ~ 137 (205)
T 3grz_A 137 I 137 (205)
T ss_dssp H
T ss_pred H
Confidence 4
No 124
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*
Probab=98.33 E-value=7.9e-07 Score=74.79 Aligned_cols=69 Identities=13% Similarity=-0.004 Sum_probs=52.5
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec--hHHHHhC---CCC------CCceEEEcccCCCCCC--CCEEEec
Q 024046 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL--PHVVQDA---PSY------AGVEHVGGNMFESVPE--GDAILMK 262 (273)
Q Consensus 196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl--p~v~~~a---~~~------~ri~~~~gD~f~~~p~--~D~~~l~ 262 (273)
....+|||||||+|.++..+++++|+.+++++|+ +.+++.| +.. ++|+++.+|... +|. .|.+...
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~-l~~~~~d~v~~i 101 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAES-LPFELKNIADSI 101 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTB-CCGGGTTCEEEE
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHH-hhhhccCeEEEE
Confidence 4568999999999999999999999999999998 4555544 432 679999999876 353 2555444
Q ss_pred ccc
Q 024046 263 VGN 265 (273)
Q Consensus 263 ~vL 265 (273)
.+.
T Consensus 102 ~~~ 104 (225)
T 3p2e_A 102 SIL 104 (225)
T ss_dssp EEE
T ss_pred EEe
Confidence 443
No 125
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Probab=98.32 E-value=7.5e-07 Score=72.94 Aligned_cols=74 Identities=18% Similarity=0.201 Sum_probs=58.1
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-CCceEEEcccCCCCCCC-CEEEecccccccCC
Q 024046 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFESVPEG-DAILMKVGNFENYQ 270 (273)
Q Consensus 195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-~ri~~~~gD~f~~~p~~-D~~~l~~vLHd~~~ 270 (273)
.....+|||||||+|.++..+++. +..+++++|+ |.+++.++.+ .+++++.+|+.+ +|.. |++++.-.+|.+.+
T Consensus 49 ~~~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~-~~~~~D~v~~~~p~~~~~~ 125 (200)
T 1ne2_A 49 NIGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCGGVNFMVADVSE-ISGKYDTWIMNPPFGSVVK 125 (200)
T ss_dssp SSBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGG-CCCCEEEEEECCCC-----
T ss_pred CCCCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcCCCEEEECcHHH-CCCCeeEEEECCCchhccC
Confidence 346689999999999999999987 6567999998 8888877653 489999999987 5554 99999988887764
No 126
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=98.31 E-value=8.9e-07 Score=75.40 Aligned_cols=77 Identities=6% Similarity=0.232 Sum_probs=59.3
Q ss_pred HHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC----CCCceEEEcccCC-CCCC-CC
Q 024046 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFE-SVPE-GD 257 (273)
Q Consensus 185 ~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~ri~~~~gD~f~-~~p~-~D 257 (273)
...+++..+ ..+..+|||||||+|.++..++++. .+++++|+ |.+++.++. .++++++.+|+.+ +++. .+
T Consensus 19 ~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~ 95 (244)
T 1qam_A 19 IDKIMTNIR-LNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQS 95 (244)
T ss_dssp HHHHHTTCC-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCC
T ss_pred HHHHHHhCC-CCCCCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCcccCCC
Confidence 345666665 6677899999999999999999997 67899998 777776653 3789999999998 6664 35
Q ss_pred EEEeccc
Q 024046 258 AILMKVG 264 (273)
Q Consensus 258 ~~~l~~v 264 (273)
..++++.
T Consensus 96 ~~vv~nl 102 (244)
T 1qam_A 96 YKIFGNI 102 (244)
T ss_dssp CEEEEEC
T ss_pred eEEEEeC
Confidence 4555543
No 127
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Probab=98.31 E-value=7.2e-07 Score=77.22 Aligned_cols=72 Identities=15% Similarity=0.086 Sum_probs=59.2
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCC-CC-CCC--CEEEec
Q 024046 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SV-PEG--DAILMK 262 (273)
Q Consensus 195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~-~~-p~~--D~~~l~ 262 (273)
..+..+|||||||+|.++..+++. +..+++++|+ |.+++.|+.. ++++++.+|+.+ ++ +.+ |+|++.
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~ 140 (298)
T 1ri5_A 62 TKRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQ 140 (298)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEEC
Confidence 456789999999999999998776 5668999998 8888776542 469999999998 55 343 999999
Q ss_pred ccccc
Q 024046 263 VGNFE 267 (273)
Q Consensus 263 ~vLHd 267 (273)
.++|.
T Consensus 141 ~~l~~ 145 (298)
T 1ri5_A 141 FSFHY 145 (298)
T ss_dssp SCGGG
T ss_pred chhhh
Confidence 99986
No 128
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=98.30 E-value=1.7e-06 Score=71.54 Aligned_cols=74 Identities=18% Similarity=0.221 Sum_probs=59.1
Q ss_pred HHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------C-CceEEEcccCCCCC---CC
Q 024046 188 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------A-GVEHVGGNMFESVP---EG 256 (273)
Q Consensus 188 il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~-ri~~~~gD~f~~~p---~~ 256 (273)
++..++ .....+|||||||+|.++..++++ ..+++++|+ |.+++.|++. + +++++.+|+.+.++ ..
T Consensus 47 ~l~~l~-~~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~ 123 (204)
T 3njr_A 47 TLAALA-PRRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLP 123 (204)
T ss_dssp HHHHHC-CCTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCC
T ss_pred HHHhcC-CCCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCC
Confidence 344455 667789999999999999999998 778999998 8888877642 4 89999999988433 34
Q ss_pred CEEEeccc
Q 024046 257 DAILMKVG 264 (273)
Q Consensus 257 D~~~l~~v 264 (273)
|++++...
T Consensus 124 D~v~~~~~ 131 (204)
T 3njr_A 124 EAVFIGGG 131 (204)
T ss_dssp SEEEECSC
T ss_pred CEEEECCc
Confidence 99987654
No 129
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=98.30 E-value=1.5e-06 Score=73.67 Aligned_cols=75 Identities=16% Similarity=0.261 Sum_probs=62.1
Q ss_pred HHHHhhcccCCCcceEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHHhCCC-------CCCceEEEcccCCC-CCC
Q 024046 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFES-VPE 255 (273)
Q Consensus 186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~-~P~l~~~~~Dl-p~v~~~a~~-------~~ri~~~~gD~f~~-~p~ 255 (273)
..++..++ +.+..+|||+|||+|.++..+++. .|..+++++|. |.+++.|+. .++++++.+|+.+. ++.
T Consensus 86 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~ 164 (258)
T 2pwy_A 86 SAMVTLLD-LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEE 164 (258)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCT
T ss_pred HHHHHHcC-CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCC
Confidence 34566666 677889999999999999999999 78899999998 888777653 26899999999984 775
Q ss_pred C--CEEEe
Q 024046 256 G--DAILM 261 (273)
Q Consensus 256 ~--D~~~l 261 (273)
+ |+|++
T Consensus 165 ~~~D~v~~ 172 (258)
T 2pwy_A 165 AAYDGVAL 172 (258)
T ss_dssp TCEEEEEE
T ss_pred CCcCEEEE
Confidence 3 99987
No 130
>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54
Probab=98.29 E-value=7.7e-07 Score=75.73 Aligned_cols=70 Identities=11% Similarity=0.099 Sum_probs=56.8
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEccc----CCCCC----CC-CEE
Q 024046 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNM----FESVP----EG-DAI 259 (273)
Q Consensus 197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~----f~~~p----~~-D~~ 259 (273)
+..+|||||||+|.++..+++++|+.+++++|+ |.+++.|+.+ +||+++.+|. +++++ .. |+|
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i 144 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 144 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence 457999999999999999999999999999998 8888877642 5799999994 44555 23 999
Q ss_pred Eeccccc
Q 024046 260 LMKVGNF 266 (273)
Q Consensus 260 ~l~~vLH 266 (273)
++.-..|
T Consensus 145 ~~npp~~ 151 (254)
T 2h00_A 145 MCNPPFF 151 (254)
T ss_dssp EECCCCC
T ss_pred EECCCCc
Confidence 9874444
No 131
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1
Probab=98.29 E-value=1.3e-06 Score=77.09 Aligned_cols=82 Identities=22% Similarity=0.297 Sum_probs=65.8
Q ss_pred HHHhhcccCCCcceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhCCCC------CCceEEEcccCCCCC-C-C
Q 024046 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVP-E-G 256 (273)
Q Consensus 187 ~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~~~p-~-~ 256 (273)
.+++.++ ..+..+|||||||+|.++..+++..+ +.+++++|+ |.+++.|+.. ++++++.+|+.+..+ . .
T Consensus 66 ~l~~~l~-~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~~ 144 (317)
T 1dl5_A 66 LFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSP 144 (317)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC
T ss_pred HHHHhcC-CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCCC
Confidence 4455555 66778999999999999999999988 488999998 8888777642 569999999987433 2 3
Q ss_pred -CEEEecccccccC
Q 024046 257 -DAILMKVGNFENY 269 (273)
Q Consensus 257 -D~~~l~~vLHd~~ 269 (273)
|+|++..++|...
T Consensus 145 fD~Iv~~~~~~~~~ 158 (317)
T 1dl5_A 145 YDVIFVTVGVDEVP 158 (317)
T ss_dssp EEEEEECSBBSCCC
T ss_pred eEEEEEcCCHHHHH
Confidence 9999999998654
No 132
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Probab=98.29 E-value=1.2e-06 Score=69.18 Aligned_cols=79 Identities=15% Similarity=0.195 Sum_probs=60.9
Q ss_pred HHHhhcccCCCcceEEEecCCccHHHHHHHHHC-CCCeEEEeechHHHHhCCCCCCceEEEcccCC-C--------CCC-
Q 024046 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFE-S--------VPE- 255 (273)
Q Consensus 187 ~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~~~Dlp~v~~~a~~~~ri~~~~gD~f~-~--------~p~- 255 (273)
.+++.+....+..+|||||||+|.++..+++.+ |+.+++++|+..++ ..++++++.+|+.+ + ++.
T Consensus 12 ~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~~~----~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 87 (180)
T 1ej0_A 12 EIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMD----PIVGVDFLQGDFRDELVMKALLERVGDS 87 (180)
T ss_dssp HHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCC----CCTTEEEEESCTTSHHHHHHHHHHHTTC
T ss_pred HHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcccc----ccCcEEEEEcccccchhhhhhhccCCCC
Confidence 344544424566799999999999999999995 78899999995532 23789999999988 4 564
Q ss_pred C-CEEEecccccccC
Q 024046 256 G-DAILMKVGNFENY 269 (273)
Q Consensus 256 ~-D~~~l~~vLHd~~ 269 (273)
. |++++...+|...
T Consensus 88 ~~D~i~~~~~~~~~~ 102 (180)
T 1ej0_A 88 KVQVVMSDMAPNMSG 102 (180)
T ss_dssp CEEEEEECCCCCCCS
T ss_pred ceeEEEECCCccccC
Confidence 3 9999988877543
No 133
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Probab=98.29 E-value=2.3e-06 Score=76.38 Aligned_cols=76 Identities=18% Similarity=0.245 Sum_probs=59.0
Q ss_pred HHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhCCCC-------CCceEEEcccCC-CCCC-C-
Q 024046 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFE-SVPE-G- 256 (273)
Q Consensus 187 ~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~~-------~ri~~~~gD~f~-~~p~-~- 256 (273)
.+.+... ..+..+|||||||+|.++..++++ +..+++++|...+++.|++. ++|+++.+|+.+ ++|. .
T Consensus 55 ~i~~~~~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 132 (340)
T 2fyt_A 55 FIYQNPH-IFKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKV 132 (340)
T ss_dssp HHHHCGG-GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCE
T ss_pred HHHhhhh-hcCCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcE
Confidence 3444444 556789999999999999999987 55689999995577766542 789999999987 6663 3
Q ss_pred CEEEeccc
Q 024046 257 DAILMKVG 264 (273)
Q Consensus 257 D~~~l~~v 264 (273)
|+|+...+
T Consensus 133 D~Ivs~~~ 140 (340)
T 2fyt_A 133 DVIISEWM 140 (340)
T ss_dssp EEEEECCC
T ss_pred EEEEEcCc
Confidence 99997664
No 134
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Probab=98.28 E-value=8.4e-07 Score=79.52 Aligned_cols=72 Identities=18% Similarity=0.224 Sum_probs=57.8
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhCCCC-------CCceEEEcccCC-CCCCC--CEEEecccc
Q 024046 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFE-SVPEG--DAILMKVGN 265 (273)
Q Consensus 196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~~-------~ri~~~~gD~f~-~~p~~--D~~~l~~vL 265 (273)
.+..+|||||||+|.++..++++ +..+++++|..++++.|++. ++|+++.+|+.+ ++|.+ |+|+...+.
T Consensus 65 ~~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~ 143 (349)
T 3q7e_A 65 FKDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMG 143 (349)
T ss_dssp HTTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred CCCCEEEEEeccchHHHHHHHHC-CCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcccc
Confidence 45689999999999999999998 77789999996677766542 679999999998 67743 999986654
Q ss_pred ccc
Q 024046 266 FEN 268 (273)
Q Consensus 266 Hd~ 268 (273)
|..
T Consensus 144 ~~l 146 (349)
T 3q7e_A 144 YCL 146 (349)
T ss_dssp BTB
T ss_pred ccc
Confidence 443
No 135
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=98.28 E-value=6.2e-07 Score=76.37 Aligned_cols=69 Identities=19% Similarity=0.300 Sum_probs=56.7
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhCCCC-------CCceEEEcccCC---CCCC--C-CEE
Q 024046 195 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE---SVPE--G-DAI 259 (273)
Q Consensus 195 ~~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~---~~p~--~-D~~ 259 (273)
..+..+|||||||+|..+..+++.+| +.+++++|+ |..++.|+.. ++|+++.+|..+ .++. . |+|
T Consensus 61 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V 140 (248)
T 3tfw_A 61 LTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLI 140 (248)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEE
T ss_pred hcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEE
Confidence 44678999999999999999999999 889999998 8888777642 589999999876 2332 3 999
Q ss_pred Eecc
Q 024046 260 LMKV 263 (273)
Q Consensus 260 ~l~~ 263 (273)
++..
T Consensus 141 ~~d~ 144 (248)
T 3tfw_A 141 FIDA 144 (248)
T ss_dssp EECS
T ss_pred EECC
Confidence 8754
No 136
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=98.28 E-value=7.2e-07 Score=71.74 Aligned_cols=78 Identities=19% Similarity=0.178 Sum_probs=61.9
Q ss_pred HHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCCCCCC--C-
Q 024046 188 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPE--G- 256 (273)
Q Consensus 188 il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~~p~--~- 256 (273)
++..++ ..+..+|||||||+|.++..+++.. .+++++|. |.+++.++.. ++++++.+|+.+++|. .
T Consensus 25 ~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 101 (192)
T 1l3i_A 25 IMCLAE-PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDI 101 (192)
T ss_dssp HHHHHC-CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCE
T ss_pred HHHhcC-CCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCCCC
Confidence 344444 5677899999999999999999998 78999998 8877776542 6899999999875553 3
Q ss_pred CEEEeccccccc
Q 024046 257 DAILMKVGNFEN 268 (273)
Q Consensus 257 D~~~l~~vLHd~ 268 (273)
|++++..++|++
T Consensus 102 D~v~~~~~~~~~ 113 (192)
T 1l3i_A 102 DIAVVGGSGGEL 113 (192)
T ss_dssp EEEEESCCTTCH
T ss_pred CEEEECCchHHH
Confidence 999998877653
No 137
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=98.27 E-value=4.3e-07 Score=76.83 Aligned_cols=65 Identities=22% Similarity=0.306 Sum_probs=52.6
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcccCC---CCCCC--CEEEe
Q 024046 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE---SVPEG--DAILM 261 (273)
Q Consensus 196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-----~ri~~~~gD~f~---~~p~~--D~~~l 261 (273)
....+|||||||.|..+..+++..|. +.+++|+ |.+++.|++. .+++++.+|... ++|.+ |.+++
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~~-~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~ 134 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILY 134 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEE
T ss_pred cCCCeEEEECCCccHHHHHHHHhCCc-EEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEE
Confidence 46689999999999999999998885 7899998 9999988652 568889998754 46653 77764
No 138
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=98.27 E-value=1.3e-06 Score=75.52 Aligned_cols=75 Identities=19% Similarity=0.230 Sum_probs=62.2
Q ss_pred HHHHhhcccCCCcceEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCCCCCCC
Q 024046 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPEG 256 (273)
Q Consensus 186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~-~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~~p~~ 256 (273)
..++..++ +.+..+|||+|||+|.++..++++ .|..+++++|. |..++.|+.. ++++++.+|+.+.++.+
T Consensus 102 ~~i~~~~~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 180 (277)
T 1o54_A 102 SFIAMMLD-VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEK 180 (277)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCC
T ss_pred HHHHHHhC-CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccCC
Confidence 34566665 667789999999999999999999 78999999998 8888777642 58999999999876643
Q ss_pred --CEEEe
Q 024046 257 --DAILM 261 (273)
Q Consensus 257 --D~~~l 261 (273)
|+|++
T Consensus 181 ~~D~V~~ 187 (277)
T 1o54_A 181 DVDALFL 187 (277)
T ss_dssp SEEEEEE
T ss_pred ccCEEEE
Confidence 99987
No 139
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=98.26 E-value=7.1e-07 Score=71.49 Aligned_cols=70 Identities=13% Similarity=0.037 Sum_probs=55.9
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCCC---CCCC-CEEEec
Q 024046 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFES---VPEG-DAILMK 262 (273)
Q Consensus 195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~---~p~~-D~~~l~ 262 (273)
.....+|||||||+|.++..++++ +..+++++|+ |.+++.|+.. ++++++.+|+.+. .+.. |++++.
T Consensus 29 ~~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~ 107 (177)
T 2esr_A 29 YFNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLD 107 (177)
T ss_dssp CCCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEEC
T ss_pred hcCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEEC
Confidence 345679999999999999999988 7778999998 8888877542 4799999999873 2333 999986
Q ss_pred ccc
Q 024046 263 VGN 265 (273)
Q Consensus 263 ~vL 265 (273)
...
T Consensus 108 ~~~ 110 (177)
T 2esr_A 108 PPY 110 (177)
T ss_dssp CSS
T ss_pred CCC
Confidence 544
No 140
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20
Probab=98.26 E-value=6e-07 Score=75.93 Aligned_cols=70 Identities=17% Similarity=0.228 Sum_probs=56.9
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCC-CC----CCC-CEEEe
Q 024046 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SV----PEG-DAILM 261 (273)
Q Consensus 195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~-~~----p~~-D~~~l 261 (273)
+++..+|||||||+|..+..+++..|+.+++++|. |.+++.|+.. ++|+++.+|+.+ +. +.. |+|++
T Consensus 68 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~ 147 (240)
T 1xdz_A 68 FNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTA 147 (240)
T ss_dssp GGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred cCCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEE
Confidence 34668999999999999999999999999999998 8777776542 579999999876 33 233 99998
Q ss_pred ccc
Q 024046 262 KVG 264 (273)
Q Consensus 262 ~~v 264 (273)
..+
T Consensus 148 ~~~ 150 (240)
T 1xdz_A 148 RAV 150 (240)
T ss_dssp ECC
T ss_pred ecc
Confidence 653
No 141
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=98.26 E-value=6e-07 Score=74.88 Aligned_cols=73 Identities=8% Similarity=0.145 Sum_probs=59.3
Q ss_pred CCcceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhCCCC-------CCceEEEcccCC---CCC-----C-CC
Q 024046 196 QNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE---SVP-----E-GD 257 (273)
Q Consensus 196 ~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~---~~p-----~-~D 257 (273)
.+..+|||||||+|..+..++++.| +.+++.+|+ |.+++.|+++ ++|+++.+|..+ ..+ . .|
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD 136 (221)
T 3u81_A 57 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD 136 (221)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCS
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceE
Confidence 4568999999999999999999875 889999998 8888877652 579999999854 233 2 39
Q ss_pred EEEeccccccc
Q 024046 258 AILMKVGNFEN 268 (273)
Q Consensus 258 ~~~l~~vLHd~ 268 (273)
+|++....|.+
T Consensus 137 ~V~~d~~~~~~ 147 (221)
T 3u81_A 137 MVFLDHWKDRY 147 (221)
T ss_dssp EEEECSCGGGH
T ss_pred EEEEcCCcccc
Confidence 99998776655
No 142
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=98.26 E-value=1e-06 Score=71.85 Aligned_cols=71 Identities=14% Similarity=0.225 Sum_probs=57.6
Q ss_pred CCCcceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCC-C-CC-CC-CEEEe
Q 024046 195 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-S-VP-EG-DAILM 261 (273)
Q Consensus 195 ~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~-~-~p-~~-D~~~l 261 (273)
..+..+|||||||+|.++..+++++ |..+++++|+ |.+++.|+.. ++++++.+|+.. + .+ .. |++++
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~ 99 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMF 99 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEE
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEE
Confidence 4566899999999999999999997 7789999998 8888877642 689999999876 2 33 33 99987
Q ss_pred cccc
Q 024046 262 KVGN 265 (273)
Q Consensus 262 ~~vL 265 (273)
...+
T Consensus 100 ~~~~ 103 (197)
T 3eey_A 100 NLGY 103 (197)
T ss_dssp EESB
T ss_pred cCCc
Confidence 7644
No 143
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*
Probab=98.26 E-value=1.1e-06 Score=74.53 Aligned_cols=71 Identities=11% Similarity=0.019 Sum_probs=59.4
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcccCCC-CCC-CCEEEeccccc
Q 024046 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFES-VPE-GDAILMKVGNF 266 (273)
Q Consensus 195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-----~ri~~~~gD~f~~-~p~-~D~~~l~~vLH 266 (273)
+..+.+|+|||||.|-++..+. |..+.+++|+ +..++.++.. .+.++..+|+... .|. +|++++.-++|
T Consensus 103 ~~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~~~DvvLllk~lh 179 (253)
T 3frh_A 103 AETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAEAGDLALIFKLLP 179 (253)
T ss_dssp SCCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCCBCSEEEEESCHH
T ss_pred CCCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCCCcchHHHHHHHH
Confidence 4568899999999999999888 9999999999 8888877653 6789999999984 444 49999998877
Q ss_pred cc
Q 024046 267 EN 268 (273)
Q Consensus 267 d~ 268 (273)
+-
T Consensus 180 ~L 181 (253)
T 3frh_A 180 LL 181 (253)
T ss_dssp HH
T ss_pred Hh
Confidence 64
No 144
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Probab=98.25 E-value=1.4e-06 Score=76.22 Aligned_cols=69 Identities=19% Similarity=0.269 Sum_probs=58.1
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCCCCCC--CCEEEeccc
Q 024046 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVPE--GDAILMKVG 264 (273)
Q Consensus 195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~~~p~--~D~~~l~~v 264 (273)
.+...+|||||||+|.++..++.+.|+.+++++|+ |++++.|++. ++|+++.||..+ +|. .|+|++...
T Consensus 120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~-l~d~~FDvV~~~a~ 197 (298)
T 3fpf_A 120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETV-IDGLEFDVLMVAAL 197 (298)
T ss_dssp CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGG-GGGCCCSEEEECTT
T ss_pred CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhh-CCCCCcCEEEECCC
Confidence 67889999999999988877777889999999998 9999888753 789999999987 443 399997654
No 145
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=98.25 E-value=8.5e-07 Score=74.46 Aligned_cols=72 Identities=13% Similarity=0.255 Sum_probs=59.1
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCCC---C--CCC-CEEEe
Q 024046 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFES---V--PEG-DAILM 261 (273)
Q Consensus 196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~---~--p~~-D~~~l 261 (273)
.+..+|||||||+|..+..+++.+|..+++++|. |..++.|+.. ++|+++.+|+... . +.. |+|++
T Consensus 53 ~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 132 (233)
T 2gpy_A 53 AAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFI 132 (233)
T ss_dssp HCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEE
T ss_pred cCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEE
Confidence 4567999999999999999999999999999998 8888777642 5799999999873 2 233 99998
Q ss_pred cccccc
Q 024046 262 KVGNFE 267 (273)
Q Consensus 262 ~~vLHd 267 (273)
....++
T Consensus 133 ~~~~~~ 138 (233)
T 2gpy_A 133 DAAKGQ 138 (233)
T ss_dssp EGGGSC
T ss_pred CCCHHH
Confidence 776543
No 146
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*
Probab=98.25 E-value=6e-07 Score=75.66 Aligned_cols=72 Identities=14% Similarity=0.150 Sum_probs=59.3
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCCCCCC--CCEEEeccccc
Q 024046 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPE--GDAILMKVGNF 266 (273)
Q Consensus 197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~~p~--~D~~~l~~vLH 266 (273)
...+|||||||+|.++..+++.. .+++++|+ |.+++.|+.. ++++++.+|+.+..+. .|+|++...+|
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~ 155 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTG--MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWG 155 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEECCCCS
T ss_pred CCCEEEECccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEECCCcC
Confidence 56899999999999999999985 78999998 8888877642 4899999999883343 39999988888
Q ss_pred ccCC
Q 024046 267 ENYQ 270 (273)
Q Consensus 267 d~~~ 270 (273)
...+
T Consensus 156 ~~~~ 159 (241)
T 3gdh_A 156 GPDY 159 (241)
T ss_dssp SGGG
T ss_pred Ccch
Confidence 6544
No 147
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Probab=98.25 E-value=1.5e-06 Score=74.58 Aligned_cols=68 Identities=15% Similarity=0.283 Sum_probs=56.1
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC-------C---CCceEEEcccCCC--------CCC
Q 024046 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------Y---AGVEHVGGNMFES--------VPE 255 (273)
Q Consensus 195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-------~---~ri~~~~gD~f~~--------~p~ 255 (273)
..+..+|||||||+|.++..+++++|..+++++|+ |.+++.|+. . +||+++.+|+.+. ++.
T Consensus 34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 113 (260)
T 2ozv_A 34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPD 113 (260)
T ss_dssp CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCT
T ss_pred ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCC
Confidence 45667999999999999999999999999999998 777776543 1 3699999999874 343
Q ss_pred -C-CEEEec
Q 024046 256 -G-DAILMK 262 (273)
Q Consensus 256 -~-D~~~l~ 262 (273)
. |+|++.
T Consensus 114 ~~fD~Vv~n 122 (260)
T 2ozv_A 114 EHFHHVIMN 122 (260)
T ss_dssp TCEEEEEEC
T ss_pred CCcCEEEEC
Confidence 3 999986
No 148
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=98.25 E-value=2e-06 Score=74.95 Aligned_cols=75 Identities=19% Similarity=0.359 Sum_probs=59.7
Q ss_pred HHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCC-CCCC
Q 024046 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPE 255 (273)
Q Consensus 185 ~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~-~~p~ 255 (273)
+..+++.++ ..+..+|||||||+|.++..++++.. +++++|+ |.+++.++.. ++++++.+|+.+ ++|.
T Consensus 17 ~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~L~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~~ 93 (285)
T 1zq9_A 17 INSIIDKAA-LRPTDVVLEVGPGTGNMTVKLLEKAK--KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPF 93 (285)
T ss_dssp HHHHHHHTC-CCTTCEEEEECCTTSTTHHHHHHHSS--EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCC
T ss_pred HHHHHHhcC-CCCCCEEEEEcCcccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccchh
Confidence 345666665 66778999999999999999999964 6899998 7777766531 579999999997 6776
Q ss_pred CCEEEec
Q 024046 256 GDAILMK 262 (273)
Q Consensus 256 ~D~~~l~ 262 (273)
.|+++..
T Consensus 94 fD~vv~n 100 (285)
T 1zq9_A 94 FDTCVAN 100 (285)
T ss_dssp CSEEEEE
T ss_pred hcEEEEe
Confidence 6988873
No 149
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=98.25 E-value=8.3e-07 Score=75.84 Aligned_cols=69 Identities=19% Similarity=0.166 Sum_probs=56.5
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCC-CC----CCC-CEEEec
Q 024046 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SV----PEG-DAILMK 262 (273)
Q Consensus 196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~-~~----p~~-D~~~l~ 262 (273)
....+|||||||+|..+..++..+|+.+++++|. +..++.++.. ++|+++.+|+.+ +. ... |+|+.+
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~ 158 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR 158 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence 4678999999999999999999999999999997 7777776642 569999999976 32 133 999886
Q ss_pred cc
Q 024046 263 VG 264 (273)
Q Consensus 263 ~v 264 (273)
.+
T Consensus 159 a~ 160 (249)
T 3g89_A 159 AV 160 (249)
T ss_dssp SS
T ss_pred Cc
Confidence 54
No 150
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Probab=98.24 E-value=4e-06 Score=73.57 Aligned_cols=72 Identities=15% Similarity=0.053 Sum_probs=57.6
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------------CCceEEEcccCC-C----CC--
Q 024046 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------------AGVEHVGGNMFE-S----VP-- 254 (273)
Q Consensus 196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------------~ri~~~~gD~f~-~----~p-- 254 (273)
....+|||||||+|.++..+++ .|..+++++|+ |.+++.++.. .+++++.+|+.. + ++
T Consensus 33 ~~~~~VLDlGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 111 (313)
T 3bgv_A 33 KRDITVLDLGCGKGGDLLKWKK-GRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDP 111 (313)
T ss_dssp --CCEEEEETCTTTTTHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSST
T ss_pred CCCCEEEEECCCCcHHHHHHHh-cCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccC
Confidence 4668999999999999999988 46778999998 7777776532 379999999987 3 42
Q ss_pred C-C-CEEEeccccccc
Q 024046 255 E-G-DAILMKVGNFEN 268 (273)
Q Consensus 255 ~-~-D~~~l~~vLHd~ 268 (273)
. . |+|++..+||..
T Consensus 112 ~~~fD~V~~~~~l~~~ 127 (313)
T 3bgv_A 112 QMCFDICSCQFVCHYS 127 (313)
T ss_dssp TCCEEEEEEETCGGGG
T ss_pred CCCEEEEEEecchhhc
Confidence 2 3 999999999875
No 151
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=98.23 E-value=1.2e-06 Score=76.73 Aligned_cols=67 Identities=18% Similarity=0.181 Sum_probs=55.3
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC-----------CCCceEEEcccCCCC--CC-C-CEE
Q 024046 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-----------YAGVEHVGGNMFESV--PE-G-DAI 259 (273)
Q Consensus 196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----------~~ri~~~~gD~f~~~--p~-~-D~~ 259 (273)
+++.+|||||||+|..+..+++..|..+++++|+ |.+++.|++ .+|++++.+|.++.+ +. . |+|
T Consensus 82 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~V~~VDid~~vi~~ar~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fDvI 161 (294)
T 3adn_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp TTCCEEEEESCTTCHHHHHHHTCTTCCEEEEECSCTTHHHHHHHHCHHHHSSCTTCTTCCEECSCSCC---CCCCCEEEE
T ss_pred CCCCEEEEEeCChhHHHHHHHhCCCCCEEEEEECCHHHHHHHHHhhhhcccccccCCceEEEEChHHHHHhhcCCCccEE
Confidence 4678999999999999999999888889999998 888887653 369999999998743 22 3 999
Q ss_pred Eec
Q 024046 260 LMK 262 (273)
Q Consensus 260 ~l~ 262 (273)
++.
T Consensus 162 i~D 164 (294)
T 3adn_A 162 ISD 164 (294)
T ss_dssp EEC
T ss_pred EEC
Confidence 884
No 152
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=98.23 E-value=8.3e-07 Score=71.42 Aligned_cols=71 Identities=11% Similarity=-0.021 Sum_probs=56.6
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCCCC------CCC-CEE
Q 024046 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESV------PEG-DAI 259 (273)
Q Consensus 195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~~------p~~-D~~ 259 (273)
.....+|||+|||+|.++..+++ .+..+++++|+ |.+++.|+.. ++++++.+|+.+.. +.. |++
T Consensus 42 ~~~~~~vLD~GcG~G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i 120 (187)
T 2fhp_A 42 YFDGGMALDLYSGSGGLAIEAVS-RGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLV 120 (187)
T ss_dssp CCSSCEEEETTCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred hcCCCCEEEeCCccCHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEE
Confidence 34567999999999999999887 56678999998 8888877642 57999999998732 233 999
Q ss_pred Eeccccc
Q 024046 260 LMKVGNF 266 (273)
Q Consensus 260 ~l~~vLH 266 (273)
++....|
T Consensus 121 ~~~~~~~ 127 (187)
T 2fhp_A 121 LLDPPYA 127 (187)
T ss_dssp EECCCGG
T ss_pred EECCCCC
Confidence 9876644
No 153
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}
Probab=98.23 E-value=2.3e-06 Score=71.51 Aligned_cols=65 Identities=14% Similarity=0.197 Sum_probs=54.5
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC-CCCceEEEcccCCC--CC-CC--CEEEec
Q 024046 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-YAGVEHVGGNMFES--VP-EG--DAILMK 262 (273)
Q Consensus 196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-~~ri~~~~gD~f~~--~p-~~--D~~~l~ 262 (273)
++..+|||||||+|.++..++++ ..+++++|+ |.+++.++. .++++++.+|+.++ ++ .+ |+|++.
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~ 118 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSR 118 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEE
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeC
Confidence 45689999999999999999998 568999998 888888765 47899999999874 44 33 999876
No 154
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*
Probab=98.22 E-value=2.4e-06 Score=74.27 Aligned_cols=75 Identities=15% Similarity=0.127 Sum_probs=52.9
Q ss_pred CcceEEEecCCccHHHH----HHHHHCCCCeE--EEeec-hHHHHhCCCC-------CCceE--EEcccCC-C------C
Q 024046 197 NVERLVDVGGGFGVTLS----MITSKYPQIKA--VNFDL-PHVVQDAPSY-------AGVEH--VGGNMFE-S------V 253 (273)
Q Consensus 197 ~~~~vvDVGGG~G~~~~----~l~~~~P~l~~--~~~Dl-p~v~~~a~~~-------~ri~~--~~gD~f~-~------~ 253 (273)
+..+|||||||+|.++. .++.++|+.++ +++|. +++++.|++. +++++ ..+|.-. + +
T Consensus 52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 131 (292)
T 2aot_A 52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKK 131 (292)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTT
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcccc
Confidence 45799999999997544 55677898854 99997 8888766532 34444 4444432 1 3
Q ss_pred CC-C-CEEEecccccccCCC
Q 024046 254 PE-G-DAILMKVGNFENYQS 271 (273)
Q Consensus 254 p~-~-D~~~l~~vLHd~~~~ 271 (273)
+. . |+|+++++||+++|.
T Consensus 132 ~~~~fD~V~~~~~l~~~~d~ 151 (292)
T 2aot_A 132 ELQKWDFIHMIQMLYYVKDI 151 (292)
T ss_dssp CCCCEEEEEEESCGGGCSCH
T ss_pred CCCceeEEEEeeeeeecCCH
Confidence 33 3 999999999999873
No 155
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41
Probab=98.21 E-value=1.4e-06 Score=74.42 Aligned_cols=71 Identities=21% Similarity=0.268 Sum_probs=56.4
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCCCCceEEEcccCC-CCCCC--CEEEecccccccC
Q 024046 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE-SVPEG--DAILMKVGNFENY 269 (273)
Q Consensus 197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~ri~~~~gD~f~-~~p~~--D~~~l~~vLHd~~ 269 (273)
+..+|||||||+|.++..++++ ..+++++|. |.+++.++....-.++.+|+.+ +++.+ |+|++..+++++.
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~ 128 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYV 128 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHC
T ss_pred CCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEEcchhhhcc
Confidence 6689999999999999999988 468999998 8888877653212389999987 56654 9999988776664
No 156
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A
Probab=98.20 E-value=1.7e-06 Score=73.44 Aligned_cols=73 Identities=16% Similarity=0.150 Sum_probs=58.9
Q ss_pred CcceEEEecCCccHHHHHHHHH--CCCCeEEEeec-hHHHHhCCCC---C-------C----------------------
Q 024046 197 NVERLVDVGGGFGVTLSMITSK--YPQIKAVNFDL-PHVVQDAPSY---A-------G---------------------- 241 (273)
Q Consensus 197 ~~~~vvDVGGG~G~~~~~l~~~--~P~l~~~~~Dl-p~v~~~a~~~---~-------r---------------------- 241 (273)
...+|||+|||+|.++..+++. +|..+++++|+ |.+++.|+.. . +
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA 130 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence 5679999999999999999999 88889999998 8888877632 2 2
Q ss_pred ---ce-------------EEEcccCCCC------CC-C-CEEEecccccccC
Q 024046 242 ---VE-------------HVGGNMFESV------PE-G-DAILMKVGNFENY 269 (273)
Q Consensus 242 ---i~-------------~~~gD~f~~~------p~-~-D~~~l~~vLHd~~ 269 (273)
|+ ++.+|++++. +. . |+|++....+...
T Consensus 131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~ 182 (250)
T 1o9g_A 131 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERT 182 (250)
T ss_dssp HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSS
T ss_pred hhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccc
Confidence 77 9999999865 43 3 9999976655443
No 157
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=98.20 E-value=1.8e-06 Score=73.85 Aligned_cols=67 Identities=13% Similarity=0.302 Sum_probs=55.9
Q ss_pred CC-CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCCC---CCC-C-CEEE
Q 024046 195 FQ-NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFES---VPE-G-DAIL 260 (273)
Q Consensus 195 ~~-~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~---~p~-~-D~~~ 260 (273)
.. +..+|||||||+|.++..++++.+. +++++|+ |.+++.|+.+ +||+++.+|+.+. ++. . |+|+
T Consensus 46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii 124 (259)
T 3lpm_A 46 LPIRKGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVT 124 (259)
T ss_dssp CCSSCCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEE
T ss_pred CCCCCCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEE
Confidence 55 6789999999999999999999886 8999998 8888777642 5899999999882 433 3 9999
Q ss_pred ec
Q 024046 261 MK 262 (273)
Q Consensus 261 l~ 262 (273)
+.
T Consensus 125 ~n 126 (259)
T 3lpm_A 125 CN 126 (259)
T ss_dssp EC
T ss_pred EC
Confidence 85
No 158
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6
Probab=98.19 E-value=2.4e-06 Score=75.89 Aligned_cols=72 Identities=15% Similarity=0.265 Sum_probs=56.3
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhCCCC-------CCceEEEcccCC-CCC-CC-CEEEecccc
Q 024046 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFE-SVP-EG-DAILMKVGN 265 (273)
Q Consensus 196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~~-------~ri~~~~gD~f~-~~p-~~-D~~~l~~vL 265 (273)
.+..+|||||||+|.++..++++ +..+++++|...+++.|++. ++|+++.+|+.+ ++| +. |+|++..+.
T Consensus 37 ~~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~ 115 (328)
T 1g6q_1 37 FKDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMG 115 (328)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCB
T ss_pred cCCCEEEEecCccHHHHHHHHHC-CCCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCch
Confidence 35579999999999999998887 55689999996677665532 689999999987 566 33 999987554
Q ss_pred ccc
Q 024046 266 FEN 268 (273)
Q Consensus 266 Hd~ 268 (273)
|..
T Consensus 116 ~~l 118 (328)
T 1g6q_1 116 YFL 118 (328)
T ss_dssp TTB
T ss_pred hhc
Confidence 443
No 159
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=98.18 E-value=1.9e-06 Score=73.74 Aligned_cols=69 Identities=17% Similarity=0.292 Sum_probs=58.1
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-CCceEEEcccCC-CCCCC--CEEEeccc
Q 024046 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFE-SVPEG--DAILMKVG 264 (273)
Q Consensus 196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-~ri~~~~gD~f~-~~p~~--D~~~l~~v 264 (273)
.+..+|||||||+|.++..+++++|..+++++|. |.+++.|+.. ++++++.+|+.. +++.+ |+|+...+
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 157 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYA 157 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESC
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCC
Confidence 4567999999999999999999999999999998 8888877653 789999999986 55543 99987654
No 160
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Probab=98.18 E-value=2.2e-06 Score=76.84 Aligned_cols=77 Identities=17% Similarity=0.068 Sum_probs=62.7
Q ss_pred HHHHHhhcccCCCcceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhCCCC------CCceEEEcccCC-CCCC
Q 024046 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPE 255 (273)
Q Consensus 185 ~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~-~~p~ 255 (273)
+..++.... |.+..+|||+|||+|.+++.++... |+.+++++|+ |.+++.|+.+ ++|+++.+|+.+ +.+.
T Consensus 192 a~~l~~~~~-~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~ 270 (354)
T 3tma_A 192 AQALLRLAD-ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFF 270 (354)
T ss_dssp HHHHHHHTT-CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTC
T ss_pred HHHHHHHhC-CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCcccc
Confidence 444555555 7788899999999999999999998 9999999998 8888877653 489999999998 4433
Q ss_pred -C-CEEEec
Q 024046 256 -G-DAILMK 262 (273)
Q Consensus 256 -~-D~~~l~ 262 (273)
. |++++.
T Consensus 271 ~~~D~Ii~n 279 (354)
T 3tma_A 271 PEVDRILAN 279 (354)
T ss_dssp CCCSEEEEC
T ss_pred CCCCEEEEC
Confidence 3 998873
No 161
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*
Probab=98.18 E-value=1.9e-06 Score=69.42 Aligned_cols=66 Identities=14% Similarity=0.162 Sum_probs=53.3
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCC--CCCC-C-CEEEec
Q 024046 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE--SVPE-G-DAILMK 262 (273)
Q Consensus 195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~--~~p~-~-D~~~l~ 262 (273)
.++..+|||||||+|.++..++++ ..+++++|+ |.+++.|++. ++++++.+|+.. +.+. . |++++.
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~ 96 (185)
T 3mti_A 20 LDDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFN 96 (185)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEe
Confidence 456789999999999999999998 778999998 8888877642 689999977755 2333 3 999766
No 162
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=98.17 E-value=1.1e-06 Score=74.00 Aligned_cols=68 Identities=21% Similarity=0.280 Sum_probs=53.9
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcccCC---CCCCC--CEEEe-cc
Q 024046 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE---SVPEG--DAILM-KV 263 (273)
Q Consensus 196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-----~ri~~~~gD~f~---~~p~~--D~~~l-~~ 263 (273)
.+..+|||||||+|.++..+++..+. +++++|+ |.+++.|++. .+++++.+|+.+ +++.+ |+|++ ..
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~ 137 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred CCCCeEEEEeccCCHHHHHHHhcCCC-eEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCc
Confidence 45679999999999999999765554 7899998 8888777542 679999999876 46653 99988 55
Q ss_pred c
Q 024046 264 G 264 (273)
Q Consensus 264 v 264 (273)
.
T Consensus 138 ~ 138 (236)
T 1zx0_A 138 P 138 (236)
T ss_dssp C
T ss_pred c
Confidence 4
No 163
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=98.17 E-value=7.3e-07 Score=74.23 Aligned_cols=70 Identities=19% Similarity=0.197 Sum_probs=56.8
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhCCCC-------CCceEEEcccCCCCC-------C-CC
Q 024046 195 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVP-------E-GD 257 (273)
Q Consensus 195 ~~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~~p-------~-~D 257 (273)
..+..+|||||||+|..+..+++++| +.+++++|+ |..++.|+.. ++|+++.+|..+.+| . .|
T Consensus 56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD 135 (223)
T 3duw_A 56 IQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFD 135 (223)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCS
T ss_pred hhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcC
Confidence 44678999999999999999999999 789999998 8888776542 579999999976322 2 39
Q ss_pred EEEeccc
Q 024046 258 AILMKVG 264 (273)
Q Consensus 258 ~~~l~~v 264 (273)
+|++...
T Consensus 136 ~v~~d~~ 142 (223)
T 3duw_A 136 FIFIDAD 142 (223)
T ss_dssp EEEECSC
T ss_pred EEEEcCC
Confidence 9987654
No 164
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3
Probab=98.17 E-value=3.7e-06 Score=69.85 Aligned_cols=68 Identities=13% Similarity=0.115 Sum_probs=53.8
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHH----HHhCCCCCCceEEEcccCCC-----CCCC-CEEEec
Q 024046 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHV----VQDAPSYAGVEHVGGNMFES-----VPEG-DAILMK 262 (273)
Q Consensus 195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v----~~~a~~~~ri~~~~gD~f~~-----~p~~-D~~~l~ 262 (273)
.++..+|||||||+|.++..+++..|+.+++++|+ |.+ .+.++..+++.++.+|...+ ++.. |++++.
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~ 133 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQD 133 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEEC
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEEe
Confidence 45678999999999999999999998778999998 653 44454457899999998763 3333 999875
No 165
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=98.16 E-value=2.5e-06 Score=69.17 Aligned_cols=71 Identities=11% Similarity=-0.019 Sum_probs=56.2
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCCC---CC-C-CCEEEecc
Q 024046 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFES---VP-E-GDAILMKV 263 (273)
Q Consensus 196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~~---~p-~-~D~~~l~~ 263 (273)
....+|||+|||+|.++..++++ +..+++++|+ |.+++.|+.+ ++++++.+|+.+. ++ . .|++++.-
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~ 121 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADP 121 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECC
T ss_pred CCCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECC
Confidence 35679999999999999988774 5668999998 8888877653 5899999999872 33 3 39999876
Q ss_pred cccc
Q 024046 264 GNFE 267 (273)
Q Consensus 264 vLHd 267 (273)
..|.
T Consensus 122 p~~~ 125 (189)
T 3p9n_A 122 PYNV 125 (189)
T ss_dssp CTTS
T ss_pred CCCc
Confidence 6554
No 166
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=98.16 E-value=2.3e-06 Score=74.16 Aligned_cols=70 Identities=23% Similarity=0.246 Sum_probs=56.9
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC----------CCCceEEEcccCCC--C-CCC-CEEE
Q 024046 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFES--V-PEG-DAIL 260 (273)
Q Consensus 196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----------~~ri~~~~gD~f~~--~-p~~-D~~~ 260 (273)
+...+|||||||+|..+..+++.+|..+++++|+ |.+++.|++ .+|++++.+|.++- . +.. |+|+
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii 153 (275)
T 1iy9_A 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (275)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence 3568999999999999999999888889999999 888887653 37999999999862 2 233 9999
Q ss_pred ecccc
Q 024046 261 MKVGN 265 (273)
Q Consensus 261 l~~vL 265 (273)
+--.-
T Consensus 154 ~d~~~ 158 (275)
T 1iy9_A 154 VDSTE 158 (275)
T ss_dssp ESCSS
T ss_pred ECCCC
Confidence 85433
No 167
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=98.16 E-value=1.5e-06 Score=76.36 Aligned_cols=75 Identities=16% Similarity=0.204 Sum_probs=57.4
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC----------CCCceEEEcccCCC---CCC-C-CEE
Q 024046 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFES---VPE-G-DAI 259 (273)
Q Consensus 196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----------~~ri~~~~gD~f~~---~p~-~-D~~ 259 (273)
++..+|||||||+|..+..+++..|..+++++|+ |.+++.|++ .+|++++.+|.++. .+. . |+|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 4668999999999999999999888889999999 888876653 27899999999872 143 3 999
Q ss_pred EecccccccCC
Q 024046 260 LMKVGNFENYQ 270 (273)
Q Consensus 260 ~l~~vLHd~~~ 270 (273)
++....+.+++
T Consensus 174 i~d~~~~~~~~ 184 (304)
T 3bwc_A 174 IIDTTDPAGPA 184 (304)
T ss_dssp EEECC------
T ss_pred EECCCCccccc
Confidence 99766665543
No 168
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31
Probab=98.15 E-value=4.6e-06 Score=76.76 Aligned_cols=79 Identities=15% Similarity=0.212 Sum_probs=60.1
Q ss_pred HHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhC-------CC--------CCCceEEEcccC
Q 024046 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDA-------PS--------YAGVEHVGGNMF 250 (273)
Q Consensus 187 ~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a-------~~--------~~ri~~~~gD~f 250 (273)
.+++.+. +.+..+|||||||+|.++..+++.+|..+++++|+ |..++.| +. .++|+++.+|-+
T Consensus 233 ~ml~~l~-l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~ 311 (433)
T 1u2z_A 233 DVYQQCQ-LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSF 311 (433)
T ss_dssp HHHHHTT-CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCS
T ss_pred HHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCcc
Confidence 4555555 66788999999999999999999999888999998 6666655 32 258999988655
Q ss_pred C-C--C---C-CCCEEEeccccc
Q 024046 251 E-S--V---P-EGDAILMKVGNF 266 (273)
Q Consensus 251 ~-~--~---p-~~D~~~l~~vLH 266 (273)
. + + . ..|+|++.+.++
T Consensus 312 ~~~~~~~~~~~~FDvIvvn~~l~ 334 (433)
T 1u2z_A 312 VDNNRVAELIPQCDVILVNNFLF 334 (433)
T ss_dssp TTCHHHHHHGGGCSEEEECCTTC
T ss_pred ccccccccccCCCCEEEEeCccc
Confidence 3 2 2 1 249999877774
No 169
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=98.15 E-value=4e-06 Score=73.45 Aligned_cols=75 Identities=12% Similarity=0.278 Sum_probs=59.7
Q ss_pred HHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC----CCCceEEEcccCC-CCCC--C
Q 024046 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFE-SVPE--G 256 (273)
Q Consensus 185 ~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~ri~~~~gD~f~-~~p~--~ 256 (273)
...+++..+ ..+..+|||||||+|.++..|+++ ..+++++|+ |.+++.++. .++++++.+|+.+ ++|. .
T Consensus 39 ~~~Iv~~l~-~~~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~~f 115 (295)
T 3gru_A 39 VNKAVESAN-LTKDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLNKLDF 115 (295)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGGSCC
T ss_pred HHHHHHhcC-CCCcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCcccCCc
Confidence 345666665 667789999999999999999998 467899998 777776654 3789999999998 6775 3
Q ss_pred CEEEec
Q 024046 257 DAILMK 262 (273)
Q Consensus 257 D~~~l~ 262 (273)
|+++..
T Consensus 116 D~Iv~N 121 (295)
T 3gru_A 116 NKVVAN 121 (295)
T ss_dssp SEEEEE
T ss_pred cEEEEe
Confidence 887743
No 170
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}
Probab=98.14 E-value=3.6e-06 Score=76.20 Aligned_cols=75 Identities=20% Similarity=0.235 Sum_probs=58.6
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhCCCC-------CCceEEEcccCC-CCCCC-CEEEecccc
Q 024046 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFE-SVPEG-DAILMKVGN 265 (273)
Q Consensus 195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~~-------~ri~~~~gD~f~-~~p~~-D~~~l~~vL 265 (273)
..+..+|||||||+|.++..++++. ..+++++|...+++.|++. ++|+++.+|+.+ +.|+. |+|++..+.
T Consensus 61 ~~~~~~VLDlGcGtG~ls~~la~~g-~~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv~~~~~ 139 (376)
T 3r0q_C 61 HFEGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIISEWMG 139 (376)
T ss_dssp TTTTCEEEEESCTTTHHHHHHHHTT-CSEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEEEEEECCCB
T ss_pred cCCCCEEEEeccCcCHHHHHHHhcC-CCEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcceEEEEcChh
Confidence 4567899999999999999999984 3489999987666665532 679999999987 56654 999986666
Q ss_pred cccCC
Q 024046 266 FENYQ 270 (273)
Q Consensus 266 Hd~~~ 270 (273)
|....
T Consensus 140 ~~l~~ 144 (376)
T 3r0q_C 140 YFLLR 144 (376)
T ss_dssp TTBTT
T ss_pred hcccc
Confidence 65543
No 171
>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*
Probab=98.13 E-value=7.5e-06 Score=70.80 Aligned_cols=77 Identities=18% Similarity=0.283 Sum_probs=59.5
Q ss_pred CCcceEEEecCCc---cHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCCC---C--C---CC-
Q 024046 196 QNVERLVDVGGGF---GVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFES---V--P---EG- 256 (273)
Q Consensus 196 ~~~~~vvDVGGG~---G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~~---~--p---~~- 256 (273)
.+..+|||||||. |.....+.+.+|+.+++.+|. |.|++.|+.. .+++++.+|+.++ + | ..
T Consensus 77 ~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~ 156 (277)
T 3giw_A 77 AGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTL 156 (277)
T ss_dssp SCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTC
T ss_pred cCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhccccccccc
Confidence 3678999999997 444444555789999999998 9999988752 3799999999873 1 2 11
Q ss_pred C-----EEEecccccccCCCC
Q 024046 257 D-----AILMKVGNFENYQSH 272 (273)
Q Consensus 257 D-----~~~l~~vLHd~~~~~ 272 (273)
| ++++..+||..+|++
T Consensus 157 D~~~p~av~~~avLH~l~d~~ 177 (277)
T 3giw_A 157 DLTRPVALTVIAIVHFVLDED 177 (277)
T ss_dssp CTTSCCEEEEESCGGGSCGGG
T ss_pred CcCCcchHHhhhhHhcCCchh
Confidence 4 688999999988753
No 172
>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*
Probab=98.13 E-value=2.9e-06 Score=71.74 Aligned_cols=68 Identities=15% Similarity=0.119 Sum_probs=55.5
Q ss_pred CcceEEEecCCccHHHHHHHHH----CCCCeEEEeec-hHHHHhCCC-CCCceEEEcccCCC--CC---C--CCEEEecc
Q 024046 197 NVERLVDVGGGFGVTLSMITSK----YPQIKAVNFDL-PHVVQDAPS-YAGVEHVGGNMFES--VP---E--GDAILMKV 263 (273)
Q Consensus 197 ~~~~vvDVGGG~G~~~~~l~~~----~P~l~~~~~Dl-p~v~~~a~~-~~ri~~~~gD~f~~--~p---~--~D~~~l~~ 263 (273)
+..+|||||||+|..+..+++. +|+.+++.+|+ |.+++.|+. .++|+++.||..+. +| . .|++++..
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~ 160 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN 160 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECC
Confidence 3579999999999999999998 79999999998 887777764 37899999999873 22 3 39988754
Q ss_pred c
Q 024046 264 G 264 (273)
Q Consensus 264 v 264 (273)
.
T Consensus 161 ~ 161 (236)
T 2bm8_A 161 A 161 (236)
T ss_dssp S
T ss_pred c
Confidence 3
No 173
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=98.13 E-value=3.8e-06 Score=70.11 Aligned_cols=73 Identities=19% Similarity=0.273 Sum_probs=57.5
Q ss_pred CCCcceEEEecCC-ccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-----CCceEEEccc--CCCCCCC--CEEEecc
Q 024046 195 FQNVERLVDVGGG-FGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNM--FESVPEG--DAILMKV 263 (273)
Q Consensus 195 ~~~~~~vvDVGGG-~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-----~ri~~~~gD~--f~~~p~~--D~~~l~~ 263 (273)
.++..+||||||| +|.++..+++.+ ..+++++|+ |.+++.|+.+ -+++++.+|+ +.+++.+ |+|++.-
T Consensus 53 ~~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~np 131 (230)
T 3evz_A 53 LRGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAP 131 (230)
T ss_dssp CCSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECC
T ss_pred cCCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECC
Confidence 4567899999999 999999999997 778999998 8888877642 2799999996 4466643 9999875
Q ss_pred ccccc
Q 024046 264 GNFEN 268 (273)
Q Consensus 264 vLHd~ 268 (273)
..|..
T Consensus 132 p~~~~ 136 (230)
T 3evz_A 132 PYYDK 136 (230)
T ss_dssp CCC--
T ss_pred CCcCC
Confidence 55443
No 174
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7
Probab=98.13 E-value=3.3e-06 Score=70.52 Aligned_cols=75 Identities=17% Similarity=0.240 Sum_probs=61.4
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCC------CCeEEEeec-hHHHHhCCC-----------CCCceEEEcccCCCCCC-
Q 024046 195 FQNVERLVDVGGGFGVTLSMITSKYP------QIKAVNFDL-PHVVQDAPS-----------YAGVEHVGGNMFESVPE- 255 (273)
Q Consensus 195 ~~~~~~vvDVGGG~G~~~~~l~~~~P------~l~~~~~Dl-p~v~~~a~~-----------~~ri~~~~gD~f~~~p~- 255 (273)
..+..+|||||||+|.++..+++..+ ..+++++|. |.+++.|++ .++++++.+|...++|.
T Consensus 82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 161 (227)
T 1r18_A 82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPN 161 (227)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGG
T ss_pred CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCcC
Confidence 45667999999999999999999776 368999998 887777654 25899999999987664
Q ss_pred C--CEEEecccccccC
Q 024046 256 G--DAILMKVGNFENY 269 (273)
Q Consensus 256 ~--D~~~l~~vLHd~~ 269 (273)
+ |+|++...+|...
T Consensus 162 ~~fD~I~~~~~~~~~~ 177 (227)
T 1r18_A 162 APYNAIHVGAAAPDTP 177 (227)
T ss_dssp CSEEEEEECSCBSSCC
T ss_pred CCccEEEECCchHHHH
Confidence 3 9999998887654
No 175
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Probab=98.13 E-value=6.1e-06 Score=68.80 Aligned_cols=69 Identities=16% Similarity=0.224 Sum_probs=53.6
Q ss_pred CCCcceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHh----CCCCCCceEEEcccCCC-----CCCC-CEEEec
Q 024046 195 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQD----APSYAGVEHVGGNMFES-----VPEG-DAILMK 262 (273)
Q Consensus 195 ~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~----a~~~~ri~~~~gD~f~~-----~p~~-D~~~l~ 262 (273)
+.+..+|||+|||+|.++..+++++ |..+++++|. |.+++. ++..++++++.+|+..+ .+.. |++++.
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~ 150 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED 150 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEEC
Confidence 5567899999999999999999985 6788999998 654443 44447899999999872 2333 998864
Q ss_pred c
Q 024046 263 V 263 (273)
Q Consensus 263 ~ 263 (273)
.
T Consensus 151 ~ 151 (227)
T 1g8a_A 151 V 151 (227)
T ss_dssp C
T ss_pred C
Confidence 3
No 176
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=98.11 E-value=5.1e-06 Score=70.98 Aligned_cols=78 Identities=18% Similarity=0.264 Sum_probs=60.4
Q ss_pred HHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC--CCceEEEcccCC-CCCC--CCEE
Q 024046 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--AGVEHVGGNMFE-SVPE--GDAI 259 (273)
Q Consensus 186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~--~ri~~~~gD~f~-~~p~--~D~~ 259 (273)
..+++..+ .....+|||||||+|.++..++++ +..+++++|+ +.+++.++.. ++++++.+|+.+ +++. ++..
T Consensus 21 ~~iv~~~~-~~~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~ 98 (249)
T 3ftd_A 21 KKIAEELN-IEEGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSIGDERLEVINEDASKFPFCSLGKELK 98 (249)
T ss_dssp HHHHHHTT-CCTTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTSCCTTEEEECSCTTTCCGGGSCSSEE
T ss_pred HHHHHhcC-CCCcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhccCCCeEEEEcchhhCChhHccCCcE
Confidence 45666665 666789999999999999999988 5678999998 7888877654 679999999998 5664 2555
Q ss_pred Eecccc
Q 024046 260 LMKVGN 265 (273)
Q Consensus 260 ~l~~vL 265 (273)
++.|.-
T Consensus 99 vv~NlP 104 (249)
T 3ftd_A 99 VVGNLP 104 (249)
T ss_dssp EEEECC
T ss_pred EEEECc
Confidence 555543
No 177
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=98.11 E-value=9.2e-07 Score=73.64 Aligned_cols=69 Identities=13% Similarity=0.149 Sum_probs=55.6
Q ss_pred CCcceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhCCCC-------CCceEEEcccCCC---CC-----CC-C
Q 024046 196 QNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFES---VP-----EG-D 257 (273)
Q Consensus 196 ~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~---~p-----~~-D 257 (273)
.+..+|||||||+|..+..+++.+| ..+++++|. |..++.|+.. ++|+++.+|..+. .+ .. |
T Consensus 63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 142 (225)
T 3tr6_A 63 MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYD 142 (225)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEE
T ss_pred hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCcc
Confidence 3567999999999999999999998 889999998 7777776542 6799999999762 21 33 9
Q ss_pred EEEeccc
Q 024046 258 AILMKVG 264 (273)
Q Consensus 258 ~~~l~~v 264 (273)
++++...
T Consensus 143 ~v~~~~~ 149 (225)
T 3tr6_A 143 LIYIDAD 149 (225)
T ss_dssp EEEECSC
T ss_pred EEEECCC
Confidence 9986543
No 178
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Probab=98.10 E-value=1.2e-06 Score=75.03 Aligned_cols=75 Identities=11% Similarity=-0.009 Sum_probs=63.9
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcccCCCCCC--CCEEEecccccc
Q 024046 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFESVPE--GDAILMKVGNFE 267 (273)
Q Consensus 196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-----~ri~~~~gD~f~~~p~--~D~~~l~~vLHd 267 (273)
..+.+|||||||.|-++..+...+|..+.+.+|+ +..++.++.+ .+.++...|+..+.|. +|++++.-++|+
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p~~~~DvaL~lkti~~ 210 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRLDEPADVTLLLKTLPC 210 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCCCSCCSEEEETTCHHH
T ss_pred CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCcchHHHHHHHHH
Confidence 4588999999999999999999999999999998 7778776653 5589999999996554 499999999987
Q ss_pred cCC
Q 024046 268 NYQ 270 (273)
Q Consensus 268 ~~~ 270 (273)
-.+
T Consensus 211 Le~ 213 (281)
T 3lcv_B 211 LET 213 (281)
T ss_dssp HHH
T ss_pred hhh
Confidence 543
No 179
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=98.09 E-value=1.9e-06 Score=78.70 Aligned_cols=81 Identities=16% Similarity=0.147 Sum_probs=60.4
Q ss_pred HHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCCCCceEEEcccCC-------CCC-C
Q 024046 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE-------SVP-E 255 (273)
Q Consensus 185 ~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~ri~~~~gD~f~-------~~p-~ 255 (273)
+..+++.+. ..+..+|||||||+|.++..++++. .+++++|. +.+++.|++. .+.... ++|. +++ .
T Consensus 96 ~~~l~~~~~-~~~~~~VLDiGcG~G~~~~~l~~~g--~~v~gvD~s~~~~~~a~~~-~~~~~~-~~~~~~~~~~l~~~~~ 170 (416)
T 4e2x_A 96 ARDFLATEL-TGPDPFIVEIGCNDGIMLRTIQEAG--VRHLGFEPSSGVAAKAREK-GIRVRT-DFFEKATADDVRRTEG 170 (416)
T ss_dssp HHHHHHTTT-CSSSCEEEEETCTTTTTHHHHHHTT--CEEEEECCCHHHHHHHHTT-TCCEEC-SCCSHHHHHHHHHHHC
T ss_pred HHHHHHHhC-CCCCCEEEEecCCCCHHHHHHHHcC--CcEEEECCCHHHHHHHHHc-CCCcce-eeechhhHhhcccCCC
Confidence 455667666 6677899999999999999999974 47999998 7888888754 344333 2222 233 2
Q ss_pred C-CEEEecccccccCC
Q 024046 256 G-DAILMKVGNFENYQ 270 (273)
Q Consensus 256 ~-D~~~l~~vLHd~~~ 270 (273)
. |+|++.++||+++|
T Consensus 171 ~fD~I~~~~vl~h~~d 186 (416)
T 4e2x_A 171 PANVIYAANTLCHIPY 186 (416)
T ss_dssp CEEEEEEESCGGGCTT
T ss_pred CEEEEEECChHHhcCC
Confidence 3 99999999999875
No 180
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=98.09 E-value=2.7e-06 Score=71.34 Aligned_cols=68 Identities=13% Similarity=0.142 Sum_probs=54.5
Q ss_pred CCCcceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hH----HHHhCCCCCCceEEEcccCCC--CC--C-C-CEEEec
Q 024046 195 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PH----VVQDAPSYAGVEHVGGNMFES--VP--E-G-DAILMK 262 (273)
Q Consensus 195 ~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~~~Dl-p~----v~~~a~~~~ri~~~~gD~f~~--~p--~-~-D~~~l~ 262 (273)
+.+..+|||||||+|.++..+++.+ |..+++++|+ |. +++.++..++++++.+|+.++ +| . . |++++.
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~ 154 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFAD 154 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEEC
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEc
Confidence 5567899999999999999999997 7889999998 54 344555458899999999873 33 2 3 999874
No 181
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=98.09 E-value=2.7e-06 Score=73.97 Aligned_cols=68 Identities=15% Similarity=0.255 Sum_probs=55.2
Q ss_pred HHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCC--CeEEEeec-hHHHHhCCCC--CCceEEEcccCC-CCC
Q 024046 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ--IKAVNFDL-PHVVQDAPSY--AGVEHVGGNMFE-SVP 254 (273)
Q Consensus 186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~--l~~~~~Dl-p~v~~~a~~~--~ri~~~~gD~f~-~~p 254 (273)
..+++..+ .....+|||||||+|.++..|+++.+. .+++++|+ |.+++.+++. ++++++.+|+++ +++
T Consensus 32 ~~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~~~~~~ 105 (279)
T 3uzu_A 32 DAIVAAIR-PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDALTFDFG 105 (279)
T ss_dssp HHHHHHHC-CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGGGCCGG
T ss_pred HHHHHhcC-CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECChhcCChh
Confidence 34556555 667789999999999999999999765 56899998 8888877653 789999999988 554
No 182
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A
Probab=98.09 E-value=4.4e-06 Score=68.15 Aligned_cols=61 Identities=13% Similarity=0.209 Sum_probs=51.1
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcccCC-CCCCC--CEEEec
Q 024046 200 RLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG--DAILMK 262 (273)
Q Consensus 200 ~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-----~ri~~~~gD~f~-~~p~~--D~~~l~ 262 (273)
+|||||||+|.++..+++. ..+++++|. |.+++.++.. .+++++.+|+.+ +++.+ |+|++.
T Consensus 32 ~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~ 101 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSI 101 (202)
T ss_dssp EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEE
T ss_pred CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEE
Confidence 9999999999999999987 468999998 7888877643 389999999988 55643 999984
No 183
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=98.08 E-value=6.6e-06 Score=70.75 Aligned_cols=75 Identities=13% Similarity=0.254 Sum_probs=60.3
Q ss_pred HHHHhhcccCCCcceEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHHhCCC---------CCCceEEEcccCC-CC
Q 024046 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHVVQDAPS---------YAGVEHVGGNMFE-SV 253 (273)
Q Consensus 186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~-~P~l~~~~~Dl-p~v~~~a~~---------~~ri~~~~gD~f~-~~ 253 (273)
..++..++ .....+|||||||+|.++..+++. .|..+++++|. |.+++.|+. .++++++.+|+.+ ++
T Consensus 89 ~~i~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~ 167 (280)
T 1i9g_A 89 AQIVHEGD-IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSEL 167 (280)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCC
T ss_pred HHHHHHcC-CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCC
Confidence 34566666 667789999999999999999996 68899999998 887776653 2579999999987 45
Q ss_pred CC-C-CEEEe
Q 024046 254 PE-G-DAILM 261 (273)
Q Consensus 254 p~-~-D~~~l 261 (273)
+. . |+|++
T Consensus 168 ~~~~~D~v~~ 177 (280)
T 1i9g_A 168 PDGSVDRAVL 177 (280)
T ss_dssp CTTCEEEEEE
T ss_pred CCCceeEEEE
Confidence 54 3 99987
No 184
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13
Probab=98.07 E-value=7.2e-06 Score=72.80 Aligned_cols=76 Identities=14% Similarity=0.238 Sum_probs=58.6
Q ss_pred HHHHhhcccCCCcceEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHHhCCC-----------------CCCceEEE
Q 024046 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHVVQDAPS-----------------YAGVEHVG 246 (273)
Q Consensus 186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~-~P~l~~~~~Dl-p~v~~~a~~-----------------~~ri~~~~ 246 (273)
..++..++ ..+..+|||||||+|.++..+++. .|+.+++++|+ |..++.|++ .++|+++.
T Consensus 95 ~~~l~~l~-~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~ 173 (336)
T 2b25_A 95 NMILSMMD-INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH 173 (336)
T ss_dssp HHHHHHHT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE
T ss_pred HHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEE
Confidence 34555555 667789999999999999999998 58899999998 777776653 15899999
Q ss_pred cccCCC---CCCC--CEEEec
Q 024046 247 GNMFES---VPEG--DAILMK 262 (273)
Q Consensus 247 gD~f~~---~p~~--D~~~l~ 262 (273)
+|+.+. ++.+ |+|++.
T Consensus 174 ~d~~~~~~~~~~~~fD~V~~~ 194 (336)
T 2b25_A 174 KDISGATEDIKSLTFDAVALD 194 (336)
T ss_dssp SCTTCCC-------EEEEEEC
T ss_pred CChHHcccccCCCCeeEEEEC
Confidence 999873 4443 999873
No 185
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Probab=98.06 E-value=4.4e-06 Score=73.36 Aligned_cols=76 Identities=21% Similarity=0.262 Sum_probs=60.1
Q ss_pred HHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcccCC-C--CC-
Q 024046 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-S--VP- 254 (273)
Q Consensus 185 ~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-----~ri~~~~gD~f~-~--~p- 254 (273)
...+++.+. ..+..+|||+|||+|.++..+++++|+.+++++|. |.+++.|+++ +|++++.+||.. + ++
T Consensus 15 l~e~l~~L~-~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~~ 93 (301)
T 1m6y_A 15 VREVIEFLK-PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKT 93 (301)
T ss_dssp HHHHHHHHC-CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHH
T ss_pred HHHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHh
Confidence 345556665 56678999999999999999999999999999998 8888877542 689999999865 2 21
Q ss_pred ---C-CCEEEe
Q 024046 255 ---E-GDAILM 261 (273)
Q Consensus 255 ---~-~D~~~l 261 (273)
. .|.+++
T Consensus 94 ~g~~~~D~Vl~ 104 (301)
T 1m6y_A 94 LGIEKVDGILM 104 (301)
T ss_dssp TTCSCEEEEEE
T ss_pred cCCCCCCEEEE
Confidence 2 288776
No 186
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Probab=98.06 E-value=4.8e-06 Score=75.26 Aligned_cols=68 Identities=12% Similarity=0.066 Sum_probs=57.9
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCC-CCCC-C-CEEEec
Q 024046 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPE-G-DAILMK 262 (273)
Q Consensus 195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~-~~p~-~-D~~~l~ 262 (273)
+.+..+|||+|||+|.+++.+++..+..+++++|+ |.+++.|+.+ ++|+++.+|+.+ +.+. . |+|++.
T Consensus 215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~n 293 (373)
T 3tm4_A 215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISN 293 (373)
T ss_dssp TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEE
T ss_pred cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEEC
Confidence 56778999999999999999999998778999998 8888877653 589999999998 5553 3 999884
No 187
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=98.05 E-value=2.3e-06 Score=71.39 Aligned_cols=69 Identities=10% Similarity=0.145 Sum_probs=55.6
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhCCCC-------CCceEEEcccCCC---CC-----CC-
Q 024046 195 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFES---VP-----EG- 256 (273)
Q Consensus 195 ~~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~---~p-----~~- 256 (273)
..+..+|||||||+|..+..+++.+| +.+++++|. |..++.|++. ++|+++.+|+++. ++ ..
T Consensus 67 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~ 146 (229)
T 2avd_A 67 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF 146 (229)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred hcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCc
Confidence 44668999999999999999999988 789999998 8877776542 6899999998762 22 33
Q ss_pred CEEEecc
Q 024046 257 DAILMKV 263 (273)
Q Consensus 257 D~~~l~~ 263 (273)
|++++..
T Consensus 147 D~v~~d~ 153 (229)
T 2avd_A 147 DVAVVDA 153 (229)
T ss_dssp EEEEECS
T ss_pred cEEEECC
Confidence 9988753
No 188
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*
Probab=98.05 E-value=2.2e-06 Score=73.28 Aligned_cols=69 Identities=20% Similarity=0.316 Sum_probs=54.6
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC---C--CceEEEcccCCCCCC-C-CEEEecccc
Q 024046 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---A--GVEHVGGNMFESVPE-G-DAILMKVGN 265 (273)
Q Consensus 195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~---~--ri~~~~gD~f~~~p~-~-D~~~l~~vL 265 (273)
..+..+|||||||+|.++..+++..+ +++++|+ |..++.++.+ . .++++.+|+..++|. . |++++....
T Consensus 118 ~~~~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~~~~~fD~Vv~n~~~ 194 (254)
T 2nxc_A 118 LRPGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYA 194 (254)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCH
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcCcCCCCCEEEECCcH
Confidence 34668999999999999999999877 8999998 8877777642 1 189999999876654 3 999875443
No 189
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}
Probab=98.05 E-value=7e-06 Score=68.34 Aligned_cols=74 Identities=18% Similarity=0.199 Sum_probs=60.5
Q ss_pred CCCcceEEEecCCccHHHHHHHHHC-----CCCeEEEeec-hHHHHhCCC-----------CCCceEEEcccCCCC----
Q 024046 195 FQNVERLVDVGGGFGVTLSMITSKY-----PQIKAVNFDL-PHVVQDAPS-----------YAGVEHVGGNMFESV---- 253 (273)
Q Consensus 195 ~~~~~~vvDVGGG~G~~~~~l~~~~-----P~l~~~~~Dl-p~v~~~a~~-----------~~ri~~~~gD~f~~~---- 253 (273)
..+..+|||||||+|.++..+++.. |+.+++++|. |..++.|+. .++++++.+|..+..
T Consensus 78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 157 (227)
T 2pbf_A 78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEK 157 (227)
T ss_dssp SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHH
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccC
Confidence 4567899999999999999999987 6789999998 777776654 247999999998854
Q ss_pred C--CC-CEEEeccccccc
Q 024046 254 P--EG-DAILMKVGNFEN 268 (273)
Q Consensus 254 p--~~-D~~~l~~vLHd~ 268 (273)
+ .. |+|++...+|..
T Consensus 158 ~~~~~fD~I~~~~~~~~~ 175 (227)
T 2pbf_A 158 KELGLFDAIHVGASASEL 175 (227)
T ss_dssp HHHCCEEEEEECSBBSSC
T ss_pred ccCCCcCEEEECCchHHH
Confidence 3 23 999999888754
No 190
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=98.04 E-value=6.9e-06 Score=71.05 Aligned_cols=78 Identities=14% Similarity=0.085 Sum_probs=57.1
Q ss_pred HHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC---CCCceEEEcccCC-CCCC--CCE
Q 024046 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS---YAGVEHVGGNMFE-SVPE--GDA 258 (273)
Q Consensus 186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~---~~ri~~~~gD~f~-~~p~--~D~ 258 (273)
..+++..+ .... +|||||||+|.++..|+++. .+++++|+ +.+++.+++ .++++++.||+++ +++. ...
T Consensus 37 ~~Iv~~~~-~~~~-~VLEIG~G~G~lt~~L~~~~--~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~~~~~~ 112 (271)
T 3fut_A 37 RRIVEAAR-PFTG-PVFEVGPGLGALTRALLEAG--AEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEEVPQGS 112 (271)
T ss_dssp HHHHHHHC-CCCS-CEEEECCTTSHHHHHHHHTT--CCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGGSCTTE
T ss_pred HHHHHhcC-CCCC-eEEEEeCchHHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChhhccCcc
Confidence 34556555 5556 99999999999999999986 56899998 777776653 2689999999998 5653 223
Q ss_pred EEecccccc
Q 024046 259 ILMKVGNFE 267 (273)
Q Consensus 259 ~~l~~vLHd 267 (273)
.++.|.-++
T Consensus 113 ~iv~NlPy~ 121 (271)
T 3fut_A 113 LLVANLPYH 121 (271)
T ss_dssp EEEEEECSS
T ss_pred EEEecCccc
Confidence 344554333
No 191
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*
Probab=98.04 E-value=4.1e-06 Score=72.55 Aligned_cols=67 Identities=19% Similarity=0.071 Sum_probs=55.3
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCCCCCC-C-CEEEec
Q 024046 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPE-G-DAILMK 262 (273)
Q Consensus 195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~~p~-~-D~~~l~ 262 (273)
.++..+|||+|||+|.++..+++..+. +++++|+ |.+++.|+.+ ++++++.+|.++..+. . |++++.
T Consensus 123 ~~~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~ 199 (278)
T 2frn_A 123 AKPDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMG 199 (278)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEEC
T ss_pred CCCCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEEC
Confidence 345789999999999999999999887 8999998 8888877642 5699999999984433 3 998874
No 192
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=98.04 E-value=1.4e-06 Score=68.90 Aligned_cols=68 Identities=19% Similarity=0.059 Sum_probs=56.0
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC----C-CceEEEcccCCCCC-------CCCEEEecc
Q 024046 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----A-GVEHVGGNMFESVP-------EGDAILMKV 263 (273)
Q Consensus 197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~----~-ri~~~~gD~f~~~p-------~~D~~~l~~ 263 (273)
...+|||+|||+|.++..++++.|+ ++++|. |.+++.|+.. + +++++.+|+.+..+ ..|++++..
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~~--v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 118 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGWE--AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP 118 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCE--EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCCe--EEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence 5679999999999999999999887 999998 8888877653 2 79999999987322 239999987
Q ss_pred ccc
Q 024046 264 GNF 266 (273)
Q Consensus 264 vLH 266 (273)
.+|
T Consensus 119 ~~~ 121 (171)
T 1ws6_A 119 PYA 121 (171)
T ss_dssp CTT
T ss_pred CCc
Confidence 776
No 193
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=98.03 E-value=2.5e-06 Score=71.95 Aligned_cols=57 Identities=19% Similarity=0.244 Sum_probs=48.6
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhCCCC-------CCceEEEcccCC
Q 024046 195 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE 251 (273)
Q Consensus 195 ~~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~ 251 (273)
..+..+|||||||+|..+..+++.+| ..+++++|. |.+++.|+.. ++|+++.+|..+
T Consensus 58 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~ 123 (239)
T 2hnk_A 58 ISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALE 123 (239)
T ss_dssp HHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHH
T ss_pred hhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHH
Confidence 34568999999999999999999998 689999998 8888777642 569999999876
No 194
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*
Probab=98.03 E-value=2e-06 Score=73.14 Aligned_cols=72 Identities=13% Similarity=0.139 Sum_probs=57.2
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC----C------------------------------
Q 024046 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----A------------------------------ 240 (273)
Q Consensus 196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~----~------------------------------ 240 (273)
.+..+|||||||+|.++..+++..+ .+++++|. |.+++.+++. +
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 133 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR 133 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence 4568999999999999999998877 57899998 7777766431 2
Q ss_pred -Cc-eEEEcccCCC--CCC---C--CEEEeccccccc
Q 024046 241 -GV-EHVGGNMFES--VPE---G--DAILMKVGNFEN 268 (273)
Q Consensus 241 -ri-~~~~gD~f~~--~p~---~--D~~~l~~vLHd~ 268 (273)
+| +++.+|+.+. .+. + |+|++..+||..
T Consensus 134 ~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~ 170 (265)
T 2i62_A 134 RAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAA 170 (265)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHH
T ss_pred hhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhh
Confidence 27 9999999873 233 3 999999999943
No 195
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Probab=98.02 E-value=9.5e-06 Score=66.47 Aligned_cols=72 Identities=14% Similarity=0.051 Sum_probs=57.8
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC----C-CceEEEcccCCCCCC-CCEEEeccccccc
Q 024046 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----A-GVEHVGGNMFESVPE-GDAILMKVGNFEN 268 (273)
Q Consensus 196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~----~-ri~~~~gD~f~~~p~-~D~~~l~~vLHd~ 268 (273)
....+|||+|||+|.++..+++..+ .+++++|. |.+++.++.. + +++++.+|+.+ +|. .|++++.-..|.+
T Consensus 48 ~~~~~vlD~g~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~~D~v~~~~p~~~~ 125 (207)
T 1wy7_A 48 IEGKVVADLGAGTGVLSYGALLLGA-KEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSE-FNSRVDIVIMNPPFGSQ 125 (207)
T ss_dssp STTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGG-CCCCCSEEEECCCCSSS
T ss_pred CCcCEEEEeeCCCCHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHH-cCCCCCEEEEcCCCccc
Confidence 3567999999999999999998844 37999998 8888776642 2 79999999987 454 4999998777666
Q ss_pred C
Q 024046 269 Y 269 (273)
Q Consensus 269 ~ 269 (273)
.
T Consensus 126 ~ 126 (207)
T 1wy7_A 126 R 126 (207)
T ss_dssp S
T ss_pred c
Confidence 4
No 196
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=98.02 E-value=4.8e-06 Score=73.02 Aligned_cols=73 Identities=15% Similarity=0.337 Sum_probs=53.6
Q ss_pred HHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC------CCCceEEEcccCC-CCCCCC
Q 024046 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFE-SVPEGD 257 (273)
Q Consensus 186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~ri~~~~gD~f~-~~p~~D 257 (273)
..+++..+ ..+..+|||||||+|.++..++++ ..+++++|+ |.+++.++. .++++++.+|+.+ +.+..|
T Consensus 32 ~~i~~~~~-~~~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~D 108 (299)
T 2h1r_A 32 DKIIYAAK-IKSSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFPKFD 108 (299)
T ss_dssp HHHHHHHC-CCTTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCCCCS
T ss_pred HHHHHhcC-CCCcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCcccCC
Confidence 44555555 667789999999999999999987 357899998 777776653 2689999999987 455559
Q ss_pred EEEe
Q 024046 258 AILM 261 (273)
Q Consensus 258 ~~~l 261 (273)
+|++
T Consensus 109 ~Vv~ 112 (299)
T 2h1r_A 109 VCTA 112 (299)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8876
No 197
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=98.02 E-value=4.2e-06 Score=68.90 Aligned_cols=69 Identities=14% Similarity=0.077 Sum_probs=54.3
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCC--CCCC-C-CEEEecccc
Q 024046 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE--SVPE-G-DAILMKVGN 265 (273)
Q Consensus 197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~--~~p~-~-D~~~l~~vL 265 (273)
...+|||+|||+|.++..++++.. .+++++|+ |.+++.|+.+ ++|+++.+|+.+ +.+. . |+|++...+
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~-~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~ 132 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF 132 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCC
Confidence 347999999999999999888764 37999998 8888877642 589999999987 3333 3 999986554
Q ss_pred c
Q 024046 266 F 266 (273)
Q Consensus 266 H 266 (273)
|
T Consensus 133 ~ 133 (202)
T 2fpo_A 133 R 133 (202)
T ss_dssp S
T ss_pred C
Confidence 4
No 198
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=98.02 E-value=3.3e-06 Score=69.64 Aligned_cols=67 Identities=19% Similarity=0.208 Sum_probs=54.7
Q ss_pred CCcceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhCCCC-------CCceEEEcccCCCCC--C-CCEEEec
Q 024046 196 QNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVP--E-GDAILMK 262 (273)
Q Consensus 196 ~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~~p--~-~D~~~l~ 262 (273)
.+..+|||||||+|..+..+++.+| +.+++++|. |.+++.|++. ++|+++.+|..+..| . .|++++.
T Consensus 55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~ 133 (210)
T 3c3p_A 55 KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRDIDILFMD 133 (210)
T ss_dssp HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCSEEEEEEE
T ss_pred hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCCCCEEEEc
Confidence 3567999999999999999999998 889999998 8888877642 579999999976322 3 4888765
No 199
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=98.02 E-value=4.4e-06 Score=74.50 Aligned_cols=69 Identities=20% Similarity=0.268 Sum_probs=56.8
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC----------CCCceEEEcccCC---CCCC-C-CE
Q 024046 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFE---SVPE-G-DA 258 (273)
Q Consensus 195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----------~~ri~~~~gD~f~---~~p~-~-D~ 258 (273)
.+...+|||||||+|..+..++++.|..+++++|+ |.+++.|++ .+||+++.+|.++ ..+. . |+
T Consensus 118 ~~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDl 197 (334)
T 1xj5_A 118 IPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDA 197 (334)
T ss_dssp SSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEE
T ss_pred CCCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccE
Confidence 34668999999999999999999989999999998 888887653 2689999999876 2443 3 99
Q ss_pred EEecc
Q 024046 259 ILMKV 263 (273)
Q Consensus 259 ~~l~~ 263 (273)
|++..
T Consensus 198 Ii~d~ 202 (334)
T 1xj5_A 198 VIVDS 202 (334)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 99743
No 200
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}
Probab=98.00 E-value=1.5e-05 Score=64.51 Aligned_cols=74 Identities=19% Similarity=0.250 Sum_probs=55.2
Q ss_pred HHhhcccCCCcceEEEecCCccHHHHHHHHHCCC---------CeEEEeechHHHHhCCCCCCceEE-EcccCCC-----
Q 024046 188 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ---------IKAVNFDLPHVVQDAPSYAGVEHV-GGNMFES----- 252 (273)
Q Consensus 188 il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~---------l~~~~~Dlp~v~~~a~~~~ri~~~-~gD~f~~----- 252 (273)
+...+..+.+..+|||||||+|.++..+++++|. .+++++|+... ...++++++ .+|+...
T Consensus 13 l~~~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~----~~~~~~~~~~~~d~~~~~~~~~ 88 (196)
T 2nyu_A 13 VNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHI----FPLEGATFLCPADVTDPRTSQR 88 (196)
T ss_dssp HHHHHCCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCC----CCCTTCEEECSCCTTSHHHHHH
T ss_pred HHHhcCCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhc----ccCCCCeEEEeccCCCHHHHHH
Confidence 3444443566789999999999999999999875 78999998542 123679999 9998762
Q ss_pred ----CCC-C-CEEEecccc
Q 024046 253 ----VPE-G-DAILMKVGN 265 (273)
Q Consensus 253 ----~p~-~-D~~~l~~vL 265 (273)
++. . |+|++...+
T Consensus 89 ~~~~~~~~~fD~V~~~~~~ 107 (196)
T 2nyu_A 89 ILEVLPGRRADVILSDMAP 107 (196)
T ss_dssp HHHHSGGGCEEEEEECCCC
T ss_pred HHHhcCCCCCcEEEeCCCC
Confidence 233 3 999975433
No 201
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=98.00 E-value=1.7e-06 Score=82.51 Aligned_cols=74 Identities=16% Similarity=0.085 Sum_probs=60.0
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCC---CCCC--CCEEEecc
Q 024046 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE---SVPE--GDAILMKV 263 (273)
Q Consensus 196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~---~~p~--~D~~~l~~ 263 (273)
..+.+|||||||.|.++..+++. ..+++++|+ +..++.|+.+ -.|++..+|..+ +.+. .|+|++..
T Consensus 65 ~~~~~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e 142 (569)
T 4azs_A 65 GRPLNVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLS 142 (569)
T ss_dssp TSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEES
T ss_pred CCCCeEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECc
Confidence 45679999999999999999998 678999998 8888877642 258999998865 3443 39999999
Q ss_pred cccccCCC
Q 024046 264 GNFENYQS 271 (273)
Q Consensus 264 vLHd~~~~ 271 (273)
+||+.+|+
T Consensus 143 ~~ehv~~~ 150 (569)
T 4azs_A 143 VFHHIVHL 150 (569)
T ss_dssp CHHHHHHH
T ss_pred chhcCCCH
Confidence 99987653
No 202
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=98.00 E-value=4.3e-06 Score=73.53 Aligned_cols=70 Identities=20% Similarity=0.293 Sum_probs=57.1
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC----------CCCceEEEcccCC--CCC-CC-CEE
Q 024046 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFE--SVP-EG-DAI 259 (273)
Q Consensus 195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----------~~ri~~~~gD~f~--~~p-~~-D~~ 259 (273)
..+..+|||||||+|..+..++++.|..+++++|+ |.+++.|++ .+|++++.+|.++ +.+ .. |+|
T Consensus 93 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~I 172 (304)
T 2o07_A 93 HPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVI 172 (304)
T ss_dssp SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEE
T ss_pred CCCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEE
Confidence 34668999999999999999999989899999998 888876653 3789999999976 233 33 999
Q ss_pred Eeccc
Q 024046 260 LMKVG 264 (273)
Q Consensus 260 ~l~~v 264 (273)
++...
T Consensus 173 i~d~~ 177 (304)
T 2o07_A 173 ITDSS 177 (304)
T ss_dssp EEECC
T ss_pred EECCC
Confidence 98543
No 203
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}
Probab=97.99 E-value=1.4e-05 Score=67.14 Aligned_cols=72 Identities=17% Similarity=0.272 Sum_probs=58.2
Q ss_pred HHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCCCC-CC-C
Q 024046 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESV-PE-G 256 (273)
Q Consensus 187 ~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~~-p~-~ 256 (273)
.++...+ .....+|||+|||+|.++..++++ ..+++++|. |..++.|+.. ++++++.+|+.+.. +. .
T Consensus 82 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 158 (248)
T 2yvl_A 82 YIALKLN-LNKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGI 158 (248)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTC
T ss_pred HHHHhcC-CCCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCc
Confidence 4455555 667789999999999999999999 678999997 7777776542 68999999999865 54 3
Q ss_pred -CEEEe
Q 024046 257 -DAILM 261 (273)
Q Consensus 257 -D~~~l 261 (273)
|++++
T Consensus 159 ~D~v~~ 164 (248)
T 2yvl_A 159 FHAAFV 164 (248)
T ss_dssp BSEEEE
T ss_pred ccEEEE
Confidence 99987
No 204
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=97.99 E-value=4.2e-06 Score=70.12 Aligned_cols=67 Identities=9% Similarity=0.101 Sum_probs=53.9
Q ss_pred cceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhCCCC--------CCceEEEcccCC---CCCC-C-CEEEec
Q 024046 198 VERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFE---SVPE-G-DAILMK 262 (273)
Q Consensus 198 ~~~vvDVGGG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~~--------~ri~~~~gD~f~---~~p~-~-D~~~l~ 262 (273)
..+|||||||+|..+..+++++| +.+++.+|+ |..++.|++. +||+++.||..+ .++. . |+|++.
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d 136 (221)
T 3dr5_A 57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQ 136 (221)
T ss_dssp CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEEC
T ss_pred CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEc
Confidence 34999999999999999999986 789999998 8777776542 489999999876 2433 3 999875
Q ss_pred cc
Q 024046 263 VG 264 (273)
Q Consensus 263 ~v 264 (273)
..
T Consensus 137 ~~ 138 (221)
T 3dr5_A 137 VS 138 (221)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 205
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0
Probab=97.98 E-value=1.3e-05 Score=65.53 Aligned_cols=62 Identities=21% Similarity=0.415 Sum_probs=49.2
Q ss_pred hHHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhCCCCCCceEEEcccCC
Q 024046 184 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFE 251 (273)
Q Consensus 184 ~~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~~~ri~~~~gD~f~ 251 (273)
....+.+.+..+++..+|||||||+|.++..++++ ..+++++|+-.. ...++++++.+|+.+
T Consensus 12 KL~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~----~~~~~v~~~~~D~~~ 73 (191)
T 3dou_A 12 KLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEM----EEIAGVRFIRCDIFK 73 (191)
T ss_dssp HHHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCC----CCCTTCEEEECCTTS
T ss_pred HHHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHc--CCcEEEEecccc----ccCCCeEEEEccccC
Confidence 34456666664567789999999999999999998 678999998432 234789999999987
No 206
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}
Probab=97.98 E-value=6.9e-06 Score=70.94 Aligned_cols=69 Identities=13% Similarity=0.072 Sum_probs=57.2
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCCC-CCCC-CEEEecc
Q 024046 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFES-VPEG-DAILMKV 263 (273)
Q Consensus 195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~~-~p~~-D~~~l~~ 263 (273)
+.+..+|||+|||+|.++..++++.|..+++++|+ |.+++.|+.+ ++++++.+|.++. .+.. |++++..
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~~~~~D~Vi~d~ 194 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVELKDVADRVIMGY 194 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCCTTCEEEEEECC
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCccCCceEEEECC
Confidence 55678999999999999999999999889999998 8888877642 5789999999875 2223 9988754
No 207
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=97.97 E-value=5.3e-06 Score=72.64 Aligned_cols=67 Identities=25% Similarity=0.246 Sum_probs=54.8
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC----------CCCceEEEcccCCC--CC-CC-CEEE
Q 024046 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFES--VP-EG-DAIL 260 (273)
Q Consensus 196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----------~~ri~~~~gD~f~~--~p-~~-D~~~ 260 (273)
+...+|||||||+|..+..+++..|..+++++|+ |.+++.|++ .+|++++.+|.++. .+ .. |+|+
T Consensus 89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 168 (296)
T 1inl_A 89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 168 (296)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEE
Confidence 3558999999999999999999988899999998 888876643 36899999998763 22 33 9998
Q ss_pred ec
Q 024046 261 MK 262 (273)
Q Consensus 261 l~ 262 (273)
+.
T Consensus 169 ~d 170 (296)
T 1inl_A 169 ID 170 (296)
T ss_dssp EE
T ss_pred Ec
Confidence 73
No 208
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Probab=97.97 E-value=1.1e-05 Score=73.44 Aligned_cols=72 Identities=15% Similarity=0.163 Sum_probs=56.8
Q ss_pred HHHhhcccCCCcceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhCCCCCCceEEEcccCCCCCC-C-CEEEec
Q 024046 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFESVPE-G-DAILMK 262 (273)
Q Consensus 187 ~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~~~ri~~~~gD~f~~~p~-~-D~~~l~ 262 (273)
.+++.+. .....+|||+|||+|.++..+++++ +..+++++|+ |.+++.| ++++++.+|++...+. . |+|+..
T Consensus 30 ~~~~~~~-~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---~~~~~~~~D~~~~~~~~~fD~Ii~N 105 (421)
T 2ih2_A 30 FMVSLAE-APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---PWAEGILADFLLWEPGEAFDLILGN 105 (421)
T ss_dssp HHHHHCC-CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---TTEEEEESCGGGCCCSSCEEEEEEC
T ss_pred HHHHhhc-cCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---CCCcEEeCChhhcCccCCCCEEEEC
Confidence 3444444 3345699999999999999999988 7789999998 7777666 6899999999985443 3 999883
No 209
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=97.97 E-value=4.4e-06 Score=73.74 Aligned_cols=72 Identities=24% Similarity=0.225 Sum_probs=58.3
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC-----------CCCceEEEcccCCC--C-CCC-CEE
Q 024046 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-----------YAGVEHVGGNMFES--V-PEG-DAI 259 (273)
Q Consensus 196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----------~~ri~~~~gD~f~~--~-p~~-D~~ 259 (273)
+...+|||||||+|..+..+++..|..+++++|+ |.+++.|++ .+|++++.+|..+. . +.. |+|
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 4568999999999999999999888899999998 888876642 36899999999862 2 333 999
Q ss_pred Eecccccc
Q 024046 260 LMKVGNFE 267 (273)
Q Consensus 260 ~l~~vLHd 267 (273)
++....|.
T Consensus 156 i~d~~~~~ 163 (314)
T 1uir_A 156 IIDLTDPV 163 (314)
T ss_dssp EEECCCCB
T ss_pred EECCCCcc
Confidence 98765543
No 210
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}
Probab=97.96 E-value=8.3e-06 Score=71.62 Aligned_cols=71 Identities=11% Similarity=0.033 Sum_probs=53.4
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC----C--------CceEEEcccCC---------CCC
Q 024046 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----A--------GVEHVGGNMFE---------SVP 254 (273)
Q Consensus 197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~----~--------ri~~~~gD~f~---------~~p 254 (273)
...+|||||||+|..+..+++.. ..+++++|+ +.+++.|+.+ . ++++..+|+.. ++|
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~-~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGE-IALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCCeEEEEecCCcHhHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence 46799999999998777766643 457999998 8889888753 1 26788888722 245
Q ss_pred CC--CEEEeccccccc
Q 024046 255 EG--DAILMKVGNFEN 268 (273)
Q Consensus 255 ~~--D~~~l~~vLHd~ 268 (273)
.+ |+|++..+||..
T Consensus 127 ~~~FD~V~~~~~lhy~ 142 (302)
T 2vdw_A 127 FGKFNIIDWQFAIHYS 142 (302)
T ss_dssp SSCEEEEEEESCGGGT
T ss_pred CCCeeEEEECchHHHh
Confidence 43 999999999974
No 211
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=97.96 E-value=1.6e-06 Score=73.68 Aligned_cols=69 Identities=13% Similarity=0.269 Sum_probs=55.2
Q ss_pred CCcceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhCCCC-------CCceEEEcccCCC---C-----CCC-C
Q 024046 196 QNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFES---V-----PEG-D 257 (273)
Q Consensus 196 ~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~---~-----p~~-D 257 (273)
.+..+|||||||+|..+..+++..| +.+++.+|+ |..++.|++. ++|+++.||..+. . +.. |
T Consensus 59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD 138 (242)
T 3r3h_A 59 TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFD 138 (242)
T ss_dssp HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEE
T ss_pred cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEe
Confidence 4568999999999999999999997 789999998 7766666542 6899999999762 2 233 9
Q ss_pred EEEeccc
Q 024046 258 AILMKVG 264 (273)
Q Consensus 258 ~~~l~~v 264 (273)
+|++...
T Consensus 139 ~V~~d~~ 145 (242)
T 3r3h_A 139 FIFIDAD 145 (242)
T ss_dssp EEEEESC
T ss_pred EEEEcCC
Confidence 9987644
No 212
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=97.96 E-value=4.5e-06 Score=74.01 Aligned_cols=68 Identities=13% Similarity=0.129 Sum_probs=55.7
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC----------CCCceEEEcccCCCC---CCC-CEEE
Q 024046 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFESV---PEG-DAIL 260 (273)
Q Consensus 196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----------~~ri~~~~gD~f~~~---p~~-D~~~ 260 (273)
+...+|||||||+|..+..+++..|..+++++|+ |.+++.|++ .+|++++.+|.++.. +.. |+|+
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi 194 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 194 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence 4568999999999999999999888999999998 888876643 268999999997632 333 9998
Q ss_pred ecc
Q 024046 261 MKV 263 (273)
Q Consensus 261 l~~ 263 (273)
+..
T Consensus 195 ~d~ 197 (321)
T 2pt6_A 195 VDS 197 (321)
T ss_dssp EEC
T ss_pred ECC
Confidence 743
No 213
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=97.95 E-value=3.6e-06 Score=71.72 Aligned_cols=69 Identities=14% Similarity=0.200 Sum_probs=55.9
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhCCCC-------CCceEEEcccCC--C-C------CCC
Q 024046 195 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE--S-V------PEG 256 (273)
Q Consensus 195 ~~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~--~-~------p~~ 256 (273)
..+..+|||||||+|..+..+++..| +.+++.+|. |.+++.|++. ++|+++.||..+ + + +..
T Consensus 77 ~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~ 156 (247)
T 1sui_A 77 LINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGS 156 (247)
T ss_dssp HTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTC
T ss_pred hhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCC
Confidence 34668999999999999999999998 789999998 8877776542 589999999876 2 2 233
Q ss_pred -CEEEecc
Q 024046 257 -DAILMKV 263 (273)
Q Consensus 257 -D~~~l~~ 263 (273)
|++++..
T Consensus 157 fD~V~~d~ 164 (247)
T 1sui_A 157 YDFIFVDA 164 (247)
T ss_dssp BSEEEECS
T ss_pred EEEEEEcC
Confidence 9998754
No 214
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Probab=97.95 E-value=1.4e-05 Score=66.39 Aligned_cols=74 Identities=22% Similarity=0.217 Sum_probs=59.2
Q ss_pred CCCcceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhCCC-----------CCCceEEEcccCCCCC-C-C-CE
Q 024046 195 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPS-----------YAGVEHVGGNMFESVP-E-G-DA 258 (273)
Q Consensus 195 ~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~-----------~~ri~~~~gD~f~~~p-~-~-D~ 258 (273)
..+..+|||||||+|.++..+++.. |+.+++++|. |..++.++. .++++++.+|.....+ . . |+
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 154 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA 154 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCE
Confidence 4566899999999999999999985 7789999998 777776653 2479999999986433 2 2 99
Q ss_pred EEeccccccc
Q 024046 259 ILMKVGNFEN 268 (273)
Q Consensus 259 ~~l~~vLHd~ 268 (273)
|++...++..
T Consensus 155 i~~~~~~~~~ 164 (226)
T 1i1n_A 155 IHVGAAAPVV 164 (226)
T ss_dssp EEECSBBSSC
T ss_pred EEECCchHHH
Confidence 9988877654
No 215
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=97.93 E-value=7.5e-06 Score=70.19 Aligned_cols=67 Identities=12% Similarity=0.225 Sum_probs=54.2
Q ss_pred HHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC----CCCceEEEcccCC-CCC
Q 024046 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFE-SVP 254 (273)
Q Consensus 185 ~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~ri~~~~gD~f~-~~p 254 (273)
...+++..+ ..+..+|||||||+|.++..|+++. .+++++|+ |.+++.+++ .++++++.+|+++ +++
T Consensus 18 ~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~ 90 (255)
T 3tqs_A 18 LQKIVSAIH-PQKTDTLVEIGPGRGALTDYLLTEC--DNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFS 90 (255)
T ss_dssp HHHHHHHHC-CCTTCEEEEECCTTTTTHHHHTTTS--SEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCGG
T ss_pred HHHHHHhcC-CCCcCEEEEEcccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCHH
Confidence 345666665 6677899999999999999999986 57899998 778777654 3789999999998 454
No 216
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}
Probab=97.92 E-value=1.7e-05 Score=68.70 Aligned_cols=74 Identities=15% Similarity=0.088 Sum_probs=54.7
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec--hHHHHhCCCC----------------CCceEEEcccCC---CC
Q 024046 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL--PHVVQDAPSY----------------AGVEHVGGNMFE---SV 253 (273)
Q Consensus 195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl--p~v~~~a~~~----------------~ri~~~~gD~f~---~~ 253 (273)
.....+|||||||+|.++..+++.. ..+++++|+ |.+++.|+.+ ++|+++..|+-. ++
T Consensus 77 ~~~~~~vLDlG~G~G~~~~~~a~~~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 155 (281)
T 3bzb_A 77 LIAGKTVCELGAGAGLVSIVAFLAG-ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSL 155 (281)
T ss_dssp GTTTCEEEETTCTTSHHHHHHHHTT-CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHH
T ss_pred hcCCCeEEEecccccHHHHHHHHcC-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHH
Confidence 3456799999999999999888864 348999999 6777655321 378888766544 22
Q ss_pred ----C-CC-CEEEecccccccC
Q 024046 254 ----P-EG-DAILMKVGNFENY 269 (273)
Q Consensus 254 ----p-~~-D~~~l~~vLHd~~ 269 (273)
+ .. |+|++..++|+.+
T Consensus 156 ~~~~~~~~fD~Ii~~dvl~~~~ 177 (281)
T 3bzb_A 156 QRCTGLQRFQVVLLADLLSFHQ 177 (281)
T ss_dssp HHHHSCSSBSEEEEESCCSCGG
T ss_pred HhhccCCCCCEEEEeCcccChH
Confidence 2 33 9999999998754
No 217
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=97.92 E-value=7.8e-06 Score=70.96 Aligned_cols=68 Identities=19% Similarity=0.295 Sum_probs=55.0
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCC----------------CCCCceEEEcccCCCC--CCC
Q 024046 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAP----------------SYAGVEHVGGNMFESV--PEG 256 (273)
Q Consensus 196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~----------------~~~ri~~~~gD~f~~~--p~~ 256 (273)
+...+|||||||+|..+..++++ |..+++++|+ |.+++.|+ ..+|++++.+|.++-+ +..
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~ 152 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG 152 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred CCCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcccCC
Confidence 45689999999999999999998 9889999999 88887654 2468999999986522 434
Q ss_pred -CEEEeccc
Q 024046 257 -DAILMKVG 264 (273)
Q Consensus 257 -D~~~l~~v 264 (273)
|+|++...
T Consensus 153 fD~Ii~d~~ 161 (281)
T 1mjf_A 153 FDVIIADST 161 (281)
T ss_dssp EEEEEEECC
T ss_pred eeEEEECCC
Confidence 99997544
No 218
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=97.91 E-value=5.4e-06 Score=68.16 Aligned_cols=69 Identities=13% Similarity=0.063 Sum_probs=53.9
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC--------CCceEEEcccCCCC---C--C-CCEEEe
Q 024046 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFESV---P--E-GDAILM 261 (273)
Q Consensus 197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~--------~ri~~~~gD~f~~~---p--~-~D~~~l 261 (273)
+..+|||+|||+|.++..++++.+ .+++++|+ |.+++.|+.+ ++++++.+|+++.. + . .|+|++
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 131 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 131 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHccC-CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEE
Confidence 347999999999999999888754 57999998 8888877642 58999999987622 2 3 599988
Q ss_pred ccccc
Q 024046 262 KVGNF 266 (273)
Q Consensus 262 ~~vLH 266 (273)
...+|
T Consensus 132 ~~~~~ 136 (201)
T 2ift_A 132 DPPFH 136 (201)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 76644
No 219
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=97.90 E-value=7.3e-06 Score=69.52 Aligned_cols=75 Identities=11% Similarity=0.283 Sum_probs=57.8
Q ss_pred HHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC----CCceEEEcccCC-CCCC-CCE
Q 024046 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFE-SVPE-GDA 258 (273)
Q Consensus 186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~----~ri~~~~gD~f~-~~p~-~D~ 258 (273)
..+++.++ ..+..+|||||||+|.++..++++. .+++++|+ |.+++.++.. ++++++.+|+.+ +++. +..
T Consensus 19 ~~i~~~~~-~~~~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~f 95 (245)
T 1yub_A 19 NQIIKQLN-LKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQRY 95 (245)
T ss_dssp HHHHHHCC-CCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSEE
T ss_pred HHHHHhcC-CCCCCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcccCCCc
Confidence 45556665 6677899999999999999999996 67999998 7778777653 689999999988 5653 333
Q ss_pred EEecc
Q 024046 259 ILMKV 263 (273)
Q Consensus 259 ~~l~~ 263 (273)
.++++
T Consensus 96 ~vv~n 100 (245)
T 1yub_A 96 KIVGN 100 (245)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 44444
No 220
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=97.90 E-value=7.9e-06 Score=71.01 Aligned_cols=68 Identities=15% Similarity=0.136 Sum_probs=56.2
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC----------CCCceEEEcccCCC---CCCC-CEEE
Q 024046 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFES---VPEG-DAIL 260 (273)
Q Consensus 196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----------~~ri~~~~gD~f~~---~p~~-D~~~ 260 (273)
+.+.+|||||||.|..+..+++..|..+++++|+ |.+++.|++ .+|++++.+|..+. .+.. |+|+
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 156 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence 4568999999999999999999988899999998 888886643 36899999999762 2344 9999
Q ss_pred ecc
Q 024046 261 MKV 263 (273)
Q Consensus 261 l~~ 263 (273)
+..
T Consensus 157 ~d~ 159 (283)
T 2i7c_A 157 VDS 159 (283)
T ss_dssp EEC
T ss_pred EcC
Confidence 843
No 221
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=97.90 E-value=7.2e-06 Score=69.27 Aligned_cols=69 Identities=13% Similarity=0.212 Sum_probs=55.8
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhCCCC-------CCceEEEcccCC--C-C------CCC
Q 024046 195 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE--S-V------PEG 256 (273)
Q Consensus 195 ~~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~--~-~------p~~ 256 (273)
..+..+|||||||+|..+..+++..| +.+++.+|. |.+++.|++. ++|+++.+|.++ + + +..
T Consensus 68 ~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~ 147 (237)
T 3c3y_A 68 LVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGS 147 (237)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTC
T ss_pred hhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCC
Confidence 34668999999999999999999998 789999998 8888777542 589999999976 2 2 233
Q ss_pred -CEEEecc
Q 024046 257 -DAILMKV 263 (273)
Q Consensus 257 -D~~~l~~ 263 (273)
|++++..
T Consensus 148 fD~I~~d~ 155 (237)
T 3c3y_A 148 YDFGFVDA 155 (237)
T ss_dssp EEEEEECS
T ss_pred cCEEEECC
Confidence 9998753
No 222
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}
Probab=97.89 E-value=1.8e-05 Score=71.99 Aligned_cols=77 Identities=6% Similarity=0.024 Sum_probs=60.5
Q ss_pred HHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCC--------------------------------------CeEEE
Q 024046 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ--------------------------------------IKAVN 226 (273)
Q Consensus 185 ~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~--------------------------------------l~~~~ 226 (273)
+..++.... |.+...|||.+||+|.++++++....+ .++++
T Consensus 190 Aa~ll~l~~-~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~G 268 (393)
T 3k0b_A 190 AAALVLLTS-WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIG 268 (393)
T ss_dssp HHHHHHHSC-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEE
T ss_pred HHHHHHHhC-CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEE
Confidence 445566555 888899999999999999988876554 56999
Q ss_pred eec-hHHHHhCCCC-------CCceEEEcccCC-CCCCC-CEEEec
Q 024046 227 FDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPEG-DAILMK 262 (273)
Q Consensus 227 ~Dl-p~v~~~a~~~-------~ri~~~~gD~f~-~~p~~-D~~~l~ 262 (273)
+|. |.+++.|+.+ ++|+++.+|+++ +.+.. |+|++.
T Consensus 269 vDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~N 314 (393)
T 3k0b_A 269 GDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVAN 314 (393)
T ss_dssp EESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEEC
T ss_pred EECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEEC
Confidence 998 8888877642 579999999998 34443 998875
No 223
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=97.87 E-value=7e-06 Score=72.55 Aligned_cols=68 Identities=21% Similarity=0.263 Sum_probs=55.9
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC----------CCCceEEEcccCCC--CC-CC-CEEE
Q 024046 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFES--VP-EG-DAIL 260 (273)
Q Consensus 196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----------~~ri~~~~gD~f~~--~p-~~-D~~~ 260 (273)
+...+|||||||+|..+..+++..|..+++++|+ |.+++.|++ .+||+++.+|.++. .+ .. |+|+
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 186 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 186 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence 4568999999999999999999989999999998 888886643 36899999999873 22 33 9999
Q ss_pred ecc
Q 024046 261 MKV 263 (273)
Q Consensus 261 l~~ 263 (273)
+..
T Consensus 187 ~d~ 189 (314)
T 2b2c_A 187 TDS 189 (314)
T ss_dssp ECC
T ss_pred EcC
Confidence 744
No 224
>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A
Probab=97.87 E-value=1.9e-05 Score=67.85 Aligned_cols=64 Identities=9% Similarity=0.015 Sum_probs=54.2
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC----------CCceEEEcccCCCCCCC-CEEEec
Q 024046 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----------AGVEHVGGNMFESVPEG-DAILMK 262 (273)
Q Consensus 196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~----------~ri~~~~gD~f~~~p~~-D~~~l~ 262 (273)
+.+.+|||||||+|..+..+++. | .+++++|+ |.+++.|+++ +|++++.+|.++-. .. |+|++.
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~-~~fD~Ii~d 146 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI-KKYDLIFCL 146 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC-CCEEEEEES
T ss_pred CCCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH-hhCCEEEEC
Confidence 45689999999999999999998 8 89999998 8999988752 58999999998733 43 998874
No 225
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Probab=97.86 E-value=1.7e-05 Score=71.97 Aligned_cols=76 Identities=16% Similarity=0.119 Sum_probs=59.7
Q ss_pred HHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCC--------------------------------------CCeEEE
Q 024046 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP--------------------------------------QIKAVN 226 (273)
Q Consensus 185 ~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P--------------------------------------~l~~~~ 226 (273)
+..++.... |.+..+|||++||+|.++++++..-. ..++++
T Consensus 184 Aa~ll~~~~-~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~G 262 (385)
T 3ldu_A 184 AAGLIYLTP-WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYG 262 (385)
T ss_dssp HHHHHHTSC-CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEE
T ss_pred HHHHHHhhC-CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEE
Confidence 445556555 88889999999999999999887643 257999
Q ss_pred eec-hHHHHhCCCC-------CCceEEEcccCC-CCCCC-CEEEe
Q 024046 227 FDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPEG-DAILM 261 (273)
Q Consensus 227 ~Dl-p~v~~~a~~~-------~ri~~~~gD~f~-~~p~~-D~~~l 261 (273)
+|+ |.+++.|+.+ ++|+++.+|+++ +.|.. |+|++
T Consensus 263 vDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~ 307 (385)
T 3ldu_A 263 YDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIIT 307 (385)
T ss_dssp EESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEE
T ss_pred EECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEE
Confidence 998 8888888753 479999999998 33443 98887
No 226
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=97.82 E-value=7.3e-06 Score=68.90 Aligned_cols=69 Identities=14% Similarity=0.252 Sum_probs=55.1
Q ss_pred CCcceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhCCCC-------CCceEEEcccCC---CCC-----CC-C
Q 024046 196 QNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE---SVP-----EG-D 257 (273)
Q Consensus 196 ~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~---~~p-----~~-D 257 (273)
.+..+|||||||+|..+..+++..| +.+++.+|. |..++.|++. ++|+++.+|..+ .+| .. |
T Consensus 71 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD 150 (232)
T 3cbg_A 71 TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFD 150 (232)
T ss_dssp HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEE
T ss_pred cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcC
Confidence 3567999999999999999999998 789999998 8777777642 579999999865 121 33 9
Q ss_pred EEEeccc
Q 024046 258 AILMKVG 264 (273)
Q Consensus 258 ~~~l~~v 264 (273)
++++...
T Consensus 151 ~V~~d~~ 157 (232)
T 3cbg_A 151 LIFIDAD 157 (232)
T ss_dssp EEEECSC
T ss_pred EEEECCC
Confidence 9987654
No 227
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=97.82 E-value=2e-05 Score=67.35 Aligned_cols=67 Identities=9% Similarity=0.110 Sum_probs=52.1
Q ss_pred HHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC----CCceEEEcccCC-CCC
Q 024046 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFE-SVP 254 (273)
Q Consensus 185 ~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~----~ri~~~~gD~f~-~~p 254 (273)
...+++..+ ..+..+|||||||+|.++. +. +.+..+++++|+ |.+++.+++. ++++++.+|+.+ +++
T Consensus 10 ~~~iv~~~~-~~~~~~VLEIG~G~G~lt~-l~-~~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~ 82 (252)
T 1qyr_A 10 IDSIVSAIN-PQKGQAMVEIGPGLAALTE-PV-GERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFG 82 (252)
T ss_dssp HHHHHHHHC-CCTTCCEEEECCTTTTTHH-HH-HTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHH
T ss_pred HHHHHHhcC-CCCcCEEEEECCCCcHHHH-hh-hCCCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHH
Confidence 345666665 6677899999999999999 64 555555999998 8888877653 589999999987 443
No 228
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}
Probab=97.82 E-value=3e-05 Score=70.36 Aligned_cols=78 Identities=13% Similarity=0.046 Sum_probs=60.6
Q ss_pred hHHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCC--------------------------------------CeEE
Q 024046 184 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ--------------------------------------IKAV 225 (273)
Q Consensus 184 ~~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~--------------------------------------l~~~ 225 (273)
.+..++.... |.+...|+|.+||+|.++++.+....+ .+++
T Consensus 182 LAaall~l~~-~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~ 260 (384)
T 3ldg_A 182 MAAAIILLSN-WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDIS 260 (384)
T ss_dssp HHHHHHHHTT-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEE
T ss_pred HHHHHHHHhC-CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEE
Confidence 3445566555 888899999999999999988876554 5699
Q ss_pred Eeec-hHHHHhCCCC-------CCceEEEcccCC-CCCCC-CEEEec
Q 024046 226 NFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPEG-DAILMK 262 (273)
Q Consensus 226 ~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~-~~p~~-D~~~l~ 262 (273)
++|. |.+++.|+.+ ++|+++.+|+++ +.+.. |+|++.
T Consensus 261 GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~N 307 (384)
T 3ldg_A 261 GFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISN 307 (384)
T ss_dssp EEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEEC
T ss_pred EEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccCCcCEEEEC
Confidence 9998 8888877642 579999999998 34443 988864
No 229
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=97.80 E-value=5.1e-05 Score=64.05 Aligned_cols=68 Identities=16% Similarity=0.231 Sum_probs=54.1
Q ss_pred CCCcceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhCC----CCCCceEEEcccCCC--CC--CC--CEEEec
Q 024046 195 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAP----SYAGVEHVGGNMFES--VP--EG--DAILMK 262 (273)
Q Consensus 195 ~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~----~~~ri~~~~gD~f~~--~p--~~--D~~~l~ 262 (273)
+++..+|||||||+|.++..+++.- |+-+++++|. |++++.+. ..++|..+.+|.-.+ .| .. |++++.
T Consensus 75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d 154 (233)
T 4df3_A 75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYAD 154 (233)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEEEe
Confidence 6688999999999999999999985 8889999998 77776553 347899999998763 22 22 877653
No 230
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...
Probab=97.79 E-value=9.2e-06 Score=70.36 Aligned_cols=72 Identities=13% Similarity=0.036 Sum_probs=51.0
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC--------------C---------------------
Q 024046 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------------A--------------------- 240 (273)
Q Consensus 197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~--------------~--------------------- 240 (273)
+..+|||||||+|.+ ..++...+..+++++|+ |.+++.|++. .
T Consensus 71 ~~~~vLDiGcG~G~~-~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 149 (289)
T 2g72_A 71 SGRTLIDIGSGPTVY-QLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 149 (289)
T ss_dssp CCSEEEEETCTTCCG-GGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCeEEEECCCcChH-HHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence 567999999999994 44444445568999998 7777765431 0
Q ss_pred -CceEEEcccCCC-------CCCC--CEEEecccccccC
Q 024046 241 -GVEHVGGNMFES-------VPEG--DAILMKVGNFENY 269 (273)
Q Consensus 241 -ri~~~~gD~f~~-------~p~~--D~~~l~~vLHd~~ 269 (273)
.++++.+|+.+. +|.+ |+|++..+||..+
T Consensus 150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~ 188 (289)
T 2g72_A 150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVS 188 (289)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHC
T ss_pred hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhc
Confidence 145677798762 2332 9999999999744
No 231
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=97.79 E-value=2.5e-05 Score=70.78 Aligned_cols=69 Identities=13% Similarity=0.144 Sum_probs=56.8
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcccCCCC-C-CC-CEEEecccccc
Q 024046 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFESV-P-EG-DAILMKVGNFE 267 (273)
Q Consensus 197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-----~ri~~~~gD~f~~~-p-~~-D~~~l~~vLHd 267 (273)
...+|||||||+|.++..++++ ..+++++|. +.+++.|+.+ -+++++.+|+++.. + .. |+|++.-.+|.
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~ 310 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHV 310 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCT
T ss_pred CCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhh
Confidence 4579999999999999999998 468999998 8888877653 25899999999843 3 23 99999888876
No 232
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=97.77 E-value=3.8e-05 Score=70.77 Aligned_cols=72 Identities=24% Similarity=0.325 Sum_probs=56.2
Q ss_pred HHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCCCCC-----
Q 024046 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVP----- 254 (273)
Q Consensus 187 ~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~~~p----- 254 (273)
.+++.++ ..+..+|||+|||+|.++..+++. ..+++++|. |.+++.|+.+ ++++|+.+|+++.++
T Consensus 277 ~~~~~l~-~~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~ 353 (433)
T 1uwv_A 277 RALEWLD-VQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWA 353 (433)
T ss_dssp HHHHHHT-CCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGG
T ss_pred HHHHhhc-CCCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhh
Confidence 3444444 556689999999999999999988 568999998 8888877642 589999999988432
Q ss_pred C--CCEEEe
Q 024046 255 E--GDAILM 261 (273)
Q Consensus 255 ~--~D~~~l 261 (273)
. .|++++
T Consensus 354 ~~~fD~Vv~ 362 (433)
T 1uwv_A 354 KNGFDKVLL 362 (433)
T ss_dssp TTCCSEEEE
T ss_pred cCCCCEEEE
Confidence 2 299886
No 233
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=97.72 E-value=4.1e-05 Score=69.20 Aligned_cols=64 Identities=22% Similarity=0.282 Sum_probs=50.4
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhCCC-------CCCceEEEcccCC-CCCCC-CEEEe
Q 024046 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS-------YAGVEHVGGNMFE-SVPEG-DAILM 261 (273)
Q Consensus 197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~-------~~ri~~~~gD~f~-~~p~~-D~~~l 261 (273)
+.++|||||||+|.+++..+++-. -+++++|...++..|++ .++|+++.+|+.+ ++|+. |+++.
T Consensus 83 ~~k~VLDvG~GtGiLs~~Aa~aGA-~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~Dvivs 155 (376)
T 4hc4_A 83 RGKTVLDVGAGTGILSIFCAQAGA-RRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVS 155 (376)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC-SEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEEC
T ss_pred CCCEEEEeCCCccHHHHHHHHhCC-CEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEe
Confidence 447899999999999887777644 47899998556665543 2789999999988 68865 99875
No 234
>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*
Probab=97.72 E-value=1.8e-05 Score=71.96 Aligned_cols=69 Identities=14% Similarity=0.268 Sum_probs=51.7
Q ss_pred CCcceEEEecCC------ccHHHHHHHHH-CCCCeEEEeec-hHHHHhCCCCCCceEEEcccCC-CCC-------CC-CE
Q 024046 196 QNVERLVDVGGG------FGVTLSMITSK-YPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE-SVP-------EG-DA 258 (273)
Q Consensus 196 ~~~~~vvDVGGG------~G~~~~~l~~~-~P~l~~~~~Dl-p~v~~~a~~~~ri~~~~gD~f~-~~p-------~~-D~ 258 (273)
.+..+||||||| +|..+..++++ +|+.+++++|+ |.+. ...++|+++.+|+.+ +++ .. |+
T Consensus 215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---~~~~rI~fv~GDa~dlpf~~~l~~~d~sFDl 291 (419)
T 3sso_A 215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---VDELRIRTIQGDQNDAEFLDRIARRYGPFDI 291 (419)
T ss_dssp TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---GCBTTEEEEECCTTCHHHHHHHHHHHCCEEE
T ss_pred CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---hcCCCcEEEEecccccchhhhhhcccCCccE
Confidence 356899999999 66666666665 69999999999 5542 234899999999987 444 23 99
Q ss_pred EEeccccccc
Q 024046 259 ILMKVGNFEN 268 (273)
Q Consensus 259 ~~l~~vLHd~ 268 (273)
|+.. ..|.+
T Consensus 292 Visd-gsH~~ 300 (419)
T 3sso_A 292 VIDD-GSHIN 300 (419)
T ss_dssp EEEC-SCCCH
T ss_pred EEEC-Ccccc
Confidence 9865 45654
No 235
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*
Probab=97.71 E-value=0.00011 Score=61.88 Aligned_cols=77 Identities=17% Similarity=0.208 Sum_probs=56.8
Q ss_pred HHHhhcc--cCCCcceEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHH----HHhCCCCCCceEEEcccCCCC-----
Q 024046 187 RILEHYE--GFQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHV----VQDAPSYAGVEHVGGNMFESV----- 253 (273)
Q Consensus 187 ~il~~~~--~~~~~~~vvDVGGG~G~~~~~l~~~-~P~l~~~~~Dl-p~v----~~~a~~~~ri~~~~gD~f~~~----- 253 (273)
.++..++ .+.+..+|||||||+|..+..+++. -|+-+++.+|+ |.+ ++.++..++|+++.+|...+.
T Consensus 64 ~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~ 143 (232)
T 3id6_C 64 AILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSV 143 (232)
T ss_dssp HHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTT
T ss_pred HHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhcc
Confidence 4444443 1567799999999999999999987 46888999998 654 344544578999999987632
Q ss_pred CCC-CEEEecc
Q 024046 254 PEG-DAILMKV 263 (273)
Q Consensus 254 p~~-D~~~l~~ 263 (273)
++. |++++.-
T Consensus 144 ~~~~D~I~~d~ 154 (232)
T 3id6_C 144 VENVDVLYVDI 154 (232)
T ss_dssp CCCEEEEEECC
T ss_pred ccceEEEEecC
Confidence 233 9987653
No 236
>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}
Probab=97.68 E-value=6.2e-05 Score=64.79 Aligned_cols=66 Identities=20% Similarity=0.255 Sum_probs=49.8
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhCCCC--C------CceEE--EcccCCCCC-C-CCEEEec
Q 024046 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY--A------GVEHV--GGNMFESVP-E-GDAILMK 262 (273)
Q Consensus 195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~~--~------ri~~~--~gD~f~~~p-~-~D~~~l~ 262 (273)
+.+..+|||||||+|.++..++++ .+++++|+-.++..+... . +|+++ .+|+.. +| . .|+|++.
T Consensus 72 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~-l~~~~fD~V~sd 147 (265)
T 2oxt_A 72 VELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHT-LPVERTDVIMCD 147 (265)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTT-SCCCCCSEEEEC
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhH-CCCCCCcEEEEe
Confidence 556789999999999999999887 579999994443333221 2 68999 999987 44 3 3999986
Q ss_pred cc
Q 024046 263 VG 264 (273)
Q Consensus 263 ~v 264 (273)
..
T Consensus 148 ~~ 149 (265)
T 2oxt_A 148 VG 149 (265)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 237
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=97.67 E-value=4.9e-05 Score=56.59 Aligned_cols=64 Identities=19% Similarity=0.310 Sum_probs=55.8
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHh--CcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhchHhhcC
Q 024046 45 IQLGVFEIIAKAGELSAPEIAAQL--QAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSN 115 (273)
Q Consensus 45 ~elglfd~L~~~g~~t~~eLA~~~--g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~~l~~~ 115 (273)
.+..|++.|.+.|+.|+.+||+.+ |+ ++..+.+.|+.|...|+++.. +.+.|++|+.+..++..
T Consensus 14 ~d~~IL~~L~~~g~~s~~eLA~~l~~gi----S~~aVs~rL~~Le~~GLV~~~---~rg~Y~LT~~G~~~l~~ 79 (111)
T 3b73_A 14 WDDRILEIIHEEGNGSPKELEDRDEIRI----SKSSVSRRLKKLADHDLLQPL---ANGVYVITEEGEAYLNG 79 (111)
T ss_dssp HHHHHHHHHHHHSCBCHHHHHTSTTCCS----CHHHHHHHHHHHHHTTSEEEC---STTCEEECHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHhcCC----CHHHHHHHHHHHHHCCCEEec---CCceEEECchHHHHHHH
Confidence 356688999877899999999999 99 999999999999999999974 44589999999876654
No 238
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=97.66 E-value=6e-05 Score=66.45 Aligned_cols=67 Identities=15% Similarity=0.125 Sum_probs=54.4
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhCCCC------CCceEEEcccCC-C-CCCC-CEEEe
Q 024046 195 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-S-VPEG-DAILM 261 (273)
Q Consensus 195 ~~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~-~-~p~~-D~~~l 261 (273)
..+..+|||+|||+|..+..+++..+ ..+++++|+ |..++.++.+ ++|+++.+|+.+ + .+.. |+|++
T Consensus 116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~ 193 (315)
T 1ixk_A 116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILL 193 (315)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEE
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEE
Confidence 56678999999999999999999975 478999998 7777766542 579999999987 2 2333 99987
No 239
>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*
Probab=97.66 E-value=5.8e-05 Score=65.36 Aligned_cols=66 Identities=14% Similarity=0.117 Sum_probs=50.0
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhCCCC--C------CceEE--EcccCCCCC-C-CCEEEec
Q 024046 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY--A------GVEHV--GGNMFESVP-E-GDAILMK 262 (273)
Q Consensus 195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~~--~------ri~~~--~gD~f~~~p-~-~D~~~l~ 262 (273)
+.+..+|||||||+|.++..++++ -+++++|+-.++..+.+. . +|+++ .+|+.. +| . .|+|++.
T Consensus 80 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~-l~~~~fD~Vvsd 155 (276)
T 2wa2_A 80 VELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTK-MEPFQADTVLCD 155 (276)
T ss_dssp CCCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGG-CCCCCCSEEEEC
T ss_pred CCCCCEEEEeccCCCHHHHHHHHc---CCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhh-CCCCCcCEEEEC
Confidence 556789999999999999999988 479999994453333221 2 78999 999986 44 3 3999986
Q ss_pred cc
Q 024046 263 VG 264 (273)
Q Consensus 263 ~v 264 (273)
..
T Consensus 156 ~~ 157 (276)
T 2wa2_A 156 IG 157 (276)
T ss_dssp CC
T ss_pred CC
Confidence 55
No 240
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45
Probab=97.66 E-value=3.2e-05 Score=68.90 Aligned_cols=74 Identities=9% Similarity=0.045 Sum_probs=58.8
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCC-----CeEEEeec-hHHHHhCCCC-----CCceEEEcccCCCCCC-C-CEEEec
Q 024046 196 QNVERLVDVGGGFGVTLSMITSKYPQ-----IKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFESVPE-G-DAILMK 262 (273)
Q Consensus 196 ~~~~~vvDVGGG~G~~~~~l~~~~P~-----l~~~~~Dl-p~v~~~a~~~-----~ri~~~~gD~f~~~p~-~-D~~~l~ 262 (273)
....+|+|+|||+|.++..+++..|+ .+++++|+ |.+++.|+.. -+++++.+|.+.+.+. . |+|+..
T Consensus 129 ~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~~~~~fD~Ii~N 208 (344)
T 2f8l_A 129 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVISD 208 (344)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEEE
T ss_pred CCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCccccCCccEEEEC
Confidence 35689999999999999999999876 67899998 8877777542 3689999999986553 3 999887
Q ss_pred ccccccC
Q 024046 263 VGNFENY 269 (273)
Q Consensus 263 ~vLHd~~ 269 (273)
--++.++
T Consensus 209 PPfg~~~ 215 (344)
T 2f8l_A 209 LPVGYYP 215 (344)
T ss_dssp CCCSEES
T ss_pred CCCCCcC
Confidence 6554443
No 241
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15
Probab=97.65 E-value=7.9e-06 Score=70.00 Aligned_cols=72 Identities=13% Similarity=0.128 Sum_probs=51.8
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-----------------------------------
Q 024046 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----------------------------------- 239 (273)
Q Consensus 196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~----------------------------------- 239 (273)
.+..+|||||||+|.++..+++..- -+++++|. |.+++.|++.
T Consensus 54 ~~g~~vLDiGCG~G~~~~~~~~~~~-~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~ 132 (263)
T 2a14_A 54 LQGDTLIDIGSGPTIYQVLAACDSF-QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 132 (263)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCceEEEeCCCccHHHHHHHHhhh-cceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHH
Confidence 4568999999999988776555432 25899998 7777765421
Q ss_pred CCce-EEEcccCCC--CC---C--CCEEEeccccccc
Q 024046 240 AGVE-HVGGNMFES--VP---E--GDAILMKVGNFEN 268 (273)
Q Consensus 240 ~ri~-~~~gD~f~~--~p---~--~D~~~l~~vLHd~ 268 (273)
.+|+ ++.+|+.++ ++ . .|+|++..+||..
T Consensus 133 ~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i 169 (263)
T 2a14_A 133 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECA 169 (263)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHH
T ss_pred hhhheEEeccccCCCCCCccccCCCCEeeehHHHHHh
Confidence 1233 899999883 22 2 3999999999974
No 242
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=97.65 E-value=6.1e-05 Score=52.48 Aligned_cols=62 Identities=10% Similarity=0.088 Sum_probs=52.0
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcc-hHHHHHHHHhcCCceeccccCCCcceecChhchH
Q 024046 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPM-MLDRMLRLLVSHRVLECSVSGGERLYALNPVSKY 111 (273)
Q Consensus 45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~-~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~~ 111 (273)
.+-.|++.|...||.|+.+||+.+|+ ++. .+++.|..|...|+++..+.+.+ .|.+|+.+..
T Consensus 12 ~~~~IL~~Lk~~g~~ta~eiA~~Lgi----t~~~aVr~hL~~Le~eGlV~~~~~gRP-~w~LT~~g~~ 74 (79)
T 1xmk_A 12 IKEKICDYLFNVSDSSALNLAKNIGL----TKARDINAVLIDMERQGDVYRQGTTPP-IWHLTDKKRE 74 (79)
T ss_dssp HHHHHHHHHHHTCCEEHHHHHHHHCG----GGHHHHHHHHHHHHHTTSEEEECSSSC-EEEECHHHHT
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHcCC----CcHHHHHHHHHHHHHCCCEEecCCCCC-CeEeCHhHHh
Confidence 35567788988899999999999999 888 99999999999999986432233 8999998753
No 243
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}
Probab=97.59 E-value=3.9e-05 Score=65.79 Aligned_cols=69 Identities=17% Similarity=0.185 Sum_probs=53.8
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-h-------HHHHhCCCC-------CCceEEEcccCCC---CC--
Q 024046 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-P-------HVVQDAPSY-------AGVEHVGGNMFES---VP-- 254 (273)
Q Consensus 195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p-------~v~~~a~~~-------~ri~~~~gD~f~~---~p-- 254 (273)
..+..+|||+|||+|.++..+++. ..+++++|+ | ..++.|+.+ +||+++.+|..+. ++
T Consensus 81 ~~~~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~ 158 (258)
T 2r6z_A 81 HTAHPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKT 158 (258)
T ss_dssp GGGCCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHH
T ss_pred cCCcCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhcc
Confidence 445579999999999999999997 468999998 7 667766543 5799999999862 44
Q ss_pred -C-CCEEEecccc
Q 024046 255 -E-GDAILMKVGN 265 (273)
Q Consensus 255 -~-~D~~~l~~vL 265 (273)
. .|+|++.-..
T Consensus 159 ~~~fD~V~~dP~~ 171 (258)
T 2r6z_A 159 QGKPDIVYLDPMY 171 (258)
T ss_dssp HCCCSEEEECCCC
T ss_pred CCCccEEEECCCC
Confidence 3 3999985443
No 244
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=97.57 E-value=0.0001 Score=64.25 Aligned_cols=66 Identities=18% Similarity=0.189 Sum_probs=55.8
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC-----------CCCceEEEcccCCCC--C-CC-CEE
Q 024046 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-----------YAGVEHVGGNMFESV--P-EG-DAI 259 (273)
Q Consensus 196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----------~~ri~~~~gD~f~~~--p-~~-D~~ 259 (273)
+++++||=||||.|..+.++++..|..+++++|+ |.|++.+++ .+|++++.+|-++-+ . +. |+|
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI 161 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence 5789999999999999999999988889999999 899887653 389999999999832 2 23 888
Q ss_pred Ee
Q 024046 260 LM 261 (273)
Q Consensus 260 ~l 261 (273)
++
T Consensus 162 i~ 163 (294)
T 3o4f_A 162 IS 163 (294)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 245
>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*
Probab=97.54 E-value=6.8e-05 Score=64.98 Aligned_cols=67 Identities=19% Similarity=0.115 Sum_probs=53.8
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCCCCCC--CCEEEec
Q 024046 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPE--GDAILMK 262 (273)
Q Consensus 195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~~p~--~D~~~l~ 262 (273)
..+..+|||+|||+|.+++.++++ +..+++.+|+ |..++.++.+ ++|+++.+|.++-.++ .|.|+|.
T Consensus 123 ~~~g~~VlD~~aG~G~~~i~~a~~-g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~~ 199 (278)
T 3k6r_A 123 AKPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMG 199 (278)
T ss_dssp CCTTCEEEETTCTTTTTTHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEEC
T ss_pred cCCCCEEEEecCcCcHHHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEEC
Confidence 456789999999999999999987 4568999998 8887776542 7899999999873333 3887764
No 246
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=97.51 E-value=0.00023 Score=51.23 Aligned_cols=62 Identities=19% Similarity=0.273 Sum_probs=52.8
Q ss_pred HHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhch
Q 024046 39 MATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (273)
Q Consensus 39 ~aL~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~ 110 (273)
.++....++.|+..| . |+.|+.|||+.+|+ +...+.+.|+.|...|++... . +.|.+|+.+.
T Consensus 26 ~~l~~~~r~~Il~~L-~-~~~~~~eLa~~l~i----s~~tv~~~L~~L~~~Glv~~~---~-g~y~l~~~g~ 87 (96)
T 1y0u_A 26 YAVTNPVRRKILRML-D-KGRSEEEIMQTLSL----SKKQLDYHLKVLEAGFCIERV---G-ERWVVTDAGK 87 (96)
T ss_dssp HHHSCHHHHHHHHHH-H-TTCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE---T-TEEEECTTTC
T ss_pred HHhCCHHHHHHHHHH-c-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE---C-CEEEECCCch
Confidence 345556677899999 5 79999999999999 999999999999999999974 4 6899988653
No 247
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=97.49 E-value=0.00021 Score=66.11 Aligned_cols=71 Identities=15% Similarity=0.131 Sum_probs=56.1
Q ss_pred hhcccCCCcceEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHHhCCC------CCCceEEEcccCCC---CC-CC-
Q 024046 190 EHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFES---VP-EG- 256 (273)
Q Consensus 190 ~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~-l~~~~~Dl-p~v~~~a~~------~~ri~~~~gD~f~~---~p-~~- 256 (273)
..++ ..+..+|||+|||+|..+..+++..|+ .+++++|. |..++.++. .++|+++.+|+.+. ++ ..
T Consensus 253 ~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~f 331 (450)
T 2yxl_A 253 IVLD-PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVA 331 (450)
T ss_dssp HHHC-CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCE
T ss_pred HhcC-CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCC
Confidence 3344 556789999999999999999999987 78999998 666665543 25799999999872 44 33
Q ss_pred CEEEe
Q 024046 257 DAILM 261 (273)
Q Consensus 257 D~~~l 261 (273)
|+|++
T Consensus 332 D~Vl~ 336 (450)
T 2yxl_A 332 DKVLL 336 (450)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 99986
No 248
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=97.49 E-value=8.4e-05 Score=64.04 Aligned_cols=68 Identities=12% Similarity=0.066 Sum_probs=54.7
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHHhCCCC------CCceEEEcccCC-CC-----CCC-CEE
Q 024046 195 FQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SV-----PEG-DAI 259 (273)
Q Consensus 195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~-l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~-~~-----p~~-D~~ 259 (273)
.....+|||+|||+|..+..+++..++ .+++++|. +..++.++.+ ++++++.+|+.+ +. +.. |+|
T Consensus 81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 160 (274)
T 3ajd_A 81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKI 160 (274)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEE
Confidence 556789999999999999999999887 78999998 7767765532 589999999976 22 333 998
Q ss_pred Eec
Q 024046 260 LMK 262 (273)
Q Consensus 260 ~l~ 262 (273)
++.
T Consensus 161 l~d 163 (274)
T 3ajd_A 161 LLD 163 (274)
T ss_dssp EEE
T ss_pred EEc
Confidence 875
No 249
>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*
Probab=97.48 E-value=0.00015 Score=63.64 Aligned_cols=68 Identities=24% Similarity=0.303 Sum_probs=49.4
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-----hHHHHhCC--CC--CCceEEEc-ccCCCCCC-CCEEEecc
Q 024046 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-----PHVVQDAP--SY--AGVEHVGG-NMFESVPE-GDAILMKV 263 (273)
Q Consensus 195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-----p~v~~~a~--~~--~ri~~~~g-D~f~~~p~-~D~~~l~~ 263 (273)
+++..+|||||||+|.++..++++ -+++.+|+ +..+..+. .. ++|+++.+ |++..-+. .|+|++..
T Consensus 80 ~~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~~~~fD~V~sd~ 156 (305)
T 2p41_A 80 VTPEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCDTLLCDI 156 (305)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred CCCCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCCcCCCCEEEECC
Confidence 556689999999999999999988 36888998 53332221 12 67999999 99872223 49999855
Q ss_pred cc
Q 024046 264 GN 265 (273)
Q Consensus 264 vL 265 (273)
..
T Consensus 157 ~~ 158 (305)
T 2p41_A 157 GE 158 (305)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 250
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=97.37 E-value=7.9e-05 Score=66.77 Aligned_cols=66 Identities=15% Similarity=0.201 Sum_probs=53.4
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC--------------CCceEEEcccCCCC------C
Q 024046 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------------AGVEHVGGNMFESV------P 254 (273)
Q Consensus 196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~--------------~ri~~~~gD~f~~~------p 254 (273)
+++.+|||||||.|..+..+++..| .+++++|+ |.|++.|+++ +|++++.+|.+.-+ +
T Consensus 187 p~pkrVL~IGgG~G~~arellk~~~-~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~L~~~~~~~ 265 (364)
T 2qfm_A 187 YTGKDVLILGGGDGGILCEIVKLKP-KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEG 265 (364)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTTCC-SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHT
T ss_pred CCCCEEEEEECChhHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHHHHhhhccC
Confidence 3678999999999999999998876 78999998 8888877532 27999999998722 2
Q ss_pred CC-CEEEec
Q 024046 255 EG-DAILMK 262 (273)
Q Consensus 255 ~~-D~~~l~ 262 (273)
+. |+|++-
T Consensus 266 ~~fDvII~D 274 (364)
T 2qfm_A 266 REFDYVIND 274 (364)
T ss_dssp CCEEEEEEE
T ss_pred CCceEEEEC
Confidence 33 998874
No 251
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=97.36 E-value=0.00031 Score=61.20 Aligned_cols=80 Identities=13% Similarity=0.083 Sum_probs=53.8
Q ss_pred HHHHhhcccCC-CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHh-CCCCCCceEEE-cccCC----CCCC--
Q 024046 186 ERILEHYEGFQ-NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQD-APSYAGVEHVG-GNMFE----SVPE-- 255 (273)
Q Consensus 186 ~~il~~~~~~~-~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~-a~~~~ri~~~~-gD~f~----~~p~-- 255 (273)
..+++.+. .. ...++||||||+|.++..+++. +..+++++|+ |.+++. ++..+|+.... .|+.. .+|.
T Consensus 74 ~~~l~~~~-~~~~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~ 151 (291)
T 3hp7_A 74 EKALAVFN-LSVEDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGL 151 (291)
T ss_dssp HHHHHHTT-CCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCC
T ss_pred HHHHHhcC-CCccccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCCC
Confidence 34556665 43 4579999999999999988887 5568999998 766665 33446665443 34322 2453
Q ss_pred CCEEEecccccc
Q 024046 256 GDAILMKVGNFE 267 (273)
Q Consensus 256 ~D~~~l~~vLHd 267 (273)
.|++++...+|+
T Consensus 152 fD~v~~d~sf~s 163 (291)
T 3hp7_A 152 PSFASIDVSFIS 163 (291)
T ss_dssp CSEEEECCSSSC
T ss_pred CCEEEEEeeHhh
Confidence 388887666654
No 252
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=97.36 E-value=8.1e-05 Score=66.14 Aligned_cols=63 Identities=13% Similarity=0.115 Sum_probs=51.1
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------C-CceEEEcccCCCC------CC-CCEEE
Q 024046 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------A-GVEHVGGNMFESV------PE-GDAIL 260 (273)
Q Consensus 197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~-ri~~~~gD~f~~~------p~-~D~~~ 260 (273)
+..+|||+|||+|.++..+++... +++.+|+ |.+++.|+.+ + +++++.+|+++.. .. .|+|+
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~ga--~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii 230 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAAGA--EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL 230 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred CCCcEEEcccccCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence 457999999999999999999754 8999998 8888877642 2 5999999998732 22 39998
Q ss_pred e
Q 024046 261 M 261 (273)
Q Consensus 261 l 261 (273)
+
T Consensus 231 ~ 231 (332)
T 2igt_A 231 T 231 (332)
T ss_dssp E
T ss_pred E
Confidence 8
No 253
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=97.33 E-value=0.00032 Score=64.45 Aligned_cols=63 Identities=16% Similarity=0.160 Sum_probs=51.7
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCCCCCC-CCEEEe
Q 024046 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVPE-GDAILM 261 (273)
Q Consensus 196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~~~p~-~D~~~l 261 (273)
.+..+|||+|||+|.++..+++.. .+++++|. |.+++.|+.+ + ++++.+|+++..+. .|++++
T Consensus 289 ~~~~~VLDlgcG~G~~sl~la~~~--~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~~~fD~Vv~ 359 (425)
T 2jjq_A 289 VEGEKILDMYSGVGTFGIYLAKRG--FNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSVKGFDTVIV 359 (425)
T ss_dssp CCSSEEEEETCTTTHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCCTTCSEEEE
T ss_pred CCCCEEEEeeccchHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCccCCCEEEE
Confidence 456899999999999999999873 47899998 8888877643 4 89999999985443 498887
No 254
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=97.29 E-value=0.00035 Score=50.73 Aligned_cols=66 Identities=18% Similarity=0.241 Sum_probs=52.2
Q ss_pred HHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChh
Q 024046 38 PMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPV 108 (273)
Q Consensus 38 ~~aL~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~ 108 (273)
..+|..-.++.|+..|.+ |+.|+.|||+.+|+ ++..+.+.|+.|...|++.....+..-.|++|+.
T Consensus 17 ~~~l~~~~r~~Il~~L~~-~~~~~~ela~~l~i----s~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~~ 82 (102)
T 3pqk_A 17 LKTLSHPVRLMLVCTLVE-GEFSVGELEQQIGI----GQPTLSQQLGVLRESGIVETRRNIKQIFYRLTEA 82 (102)
T ss_dssp HHHHCSHHHHHHHHHHHT-CCBCHHHHHHHHTC----CTTHHHHHHHHHHHTTSEEEECSSSCCEEEECSS
T ss_pred HHHcCCHHHHHHHHHHHh-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECcH
Confidence 345555677888889976 89999999999999 9999999999999999998642122235777763
No 255
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Probab=97.28 E-value=0.00021 Score=63.43 Aligned_cols=65 Identities=17% Similarity=0.207 Sum_probs=52.2
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCCCCCCCCEEEec
Q 024046 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPEGDAILMK 262 (273)
Q Consensus 195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~~p~~D~~~l~ 262 (273)
+.+..+|||+|||+|.++.. ++ +..+++++|+ |..++.++.+ ++++++.+|.++.....|++++.
T Consensus 193 ~~~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~~~fD~Vi~d 265 (336)
T 2yx1_A 193 VSLNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVDVKGNRVIMN 265 (336)
T ss_dssp CCTTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCCCCEEEEEEC
T ss_pred cCCCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhcCCCcEEEEC
Confidence 34668999999999999999 77 5778999998 8888877642 57999999999844223988873
No 256
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A
Probab=97.27 E-value=0.00021 Score=61.20 Aligned_cols=76 Identities=9% Similarity=0.150 Sum_probs=53.6
Q ss_pred HHhhcccCCCc--ceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHH-------HHhCCC-------C-CCceEEEccc
Q 024046 188 ILEHYEGFQNV--ERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHV-------VQDAPS-------Y-AGVEHVGGNM 249 (273)
Q Consensus 188 il~~~~~~~~~--~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v-------~~~a~~-------~-~ri~~~~gD~ 249 (273)
+..... ..+. .+|||+|||.|..+..++++ ..+++.+|. |.+ ++.+.. . +||+++.+|.
T Consensus 78 l~~al~-l~~g~~~~VLDl~~G~G~dal~lA~~--g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~ 154 (258)
T 2oyr_A 78 VAKAVG-IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS 154 (258)
T ss_dssp HHHHTT-CBTTBCCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCH
T ss_pred HHHHhc-ccCCCCCEEEEcCCcCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCH
Confidence 334443 4455 79999999999999999998 457999998 643 333221 1 5799999999
Q ss_pred CCC---CCCC-CEEEeccccc
Q 024046 250 FES---VPEG-DAILMKVGNF 266 (273)
Q Consensus 250 f~~---~p~~-D~~~l~~vLH 266 (273)
.+- ++.. |+|++--..+
T Consensus 155 ~~~L~~~~~~fDvV~lDP~y~ 175 (258)
T 2oyr_A 155 LTALTDITPRPQVVYLDPMFP 175 (258)
T ss_dssp HHHSTTCSSCCSEEEECCCCC
T ss_pred HHHHHhCcccCCEEEEcCCCC
Confidence 762 3443 9998854443
No 257
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=97.18 E-value=0.00026 Score=47.61 Aligned_cols=54 Identities=9% Similarity=0.282 Sum_probs=45.9
Q ss_pred HhChhHHHHhCC-CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecC
Q 024046 46 QLGVFEIIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALN 106 (273)
Q Consensus 46 elglfd~L~~~g-~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt 106 (273)
+..|++.|...+ +.|..|||+.+|+ +...+.+++..|...|++... ..+.|+++
T Consensus 12 ~~~IL~~L~~~~~~~s~~eLA~~lgl----sr~tv~~~l~~L~~~G~I~~~---~~G~y~lg 66 (67)
T 2heo_A 12 EQKILQVLSDDGGPVAIFQLVKKCQV----PKKTLNQVLYRLKKEDRVSSP---SPKYWSIG 66 (67)
T ss_dssp HHHHHHHHHHHCSCEEHHHHHHHHCS----CHHHHHHHHHHHHHTTSEEEE---ETTEEEEC
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEecC---CCceEeeC
Confidence 556888887654 8999999999999 999999999999999999762 45778764
No 258
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=97.18 E-value=0.00027 Score=50.90 Aligned_cols=65 Identities=22% Similarity=0.262 Sum_probs=51.9
Q ss_pred HHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChh
Q 024046 39 MATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPV 108 (273)
Q Consensus 39 ~aL~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~ 108 (273)
.++....++.|+..|.+ |+.|+.|||+.+|+ ++..+.+.|+.|...|++.....+....|++++.
T Consensus 18 ~~l~~~~r~~Il~~L~~-~~~~~~ela~~l~i----s~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~~ 82 (98)
T 3jth_A 18 KAMANERRLQILCMLHN-QELSVGELCAKLQL----SQSALSQHLAWLRRDGLVTTRKEAQTVYYTLKSE 82 (98)
T ss_dssp HHHCSHHHHHHHHHTTT-SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEECCTTCCEEEECCH
T ss_pred HHcCCHHHHHHHHHHhc-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECHH
Confidence 34555677889999987 89999999999999 9999999999999999998642112235777664
No 259
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=97.17 E-value=0.00054 Score=47.93 Aligned_cols=64 Identities=14% Similarity=0.294 Sum_probs=49.6
Q ss_pred HHHhChhHHHHhCC---CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhchHh
Q 024046 44 AIQLGVFEIIAKAG---ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYF 112 (273)
Q Consensus 44 a~elglfd~L~~~g---~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~~l 112 (273)
-.+..|++.|.+.+ ++|+.+||+.+|+ +...+.+.|.-|...|++...+ ..++.|.+.+....+
T Consensus 10 ~~~~~IL~~L~~~~pg~~~t~~eLA~~Lgv----sr~tV~~~L~~Le~~G~I~~~g-~~~~~W~i~~~~~~~ 76 (81)
T 1qbj_A 10 DQEQRILKFLEELGEGKATTAHDLSGKLGT----PKKEINRVLYSLAKKGKLQKEA-GTPPLWKIAVSTQAW 76 (81)
T ss_dssp HHHHHHHHHHHHHCTTCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEES-SSSCEEEEC------
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEecC-CCCCeeEEeCcHHhc
Confidence 34666888888877 7999999999999 9999999999999999998754 345788888766543
No 260
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=97.17 E-value=0.0005 Score=67.09 Aligned_cols=77 Identities=17% Similarity=0.092 Sum_probs=59.0
Q ss_pred HHHHHhhcccCCCcceEEEecCCccHHHHHHHHH------------------------------------------CCCC
Q 024046 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSK------------------------------------------YPQI 222 (273)
Q Consensus 185 ~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~------------------------------------------~P~l 222 (273)
+..++.... |.+...|+|.+||+|.++++.+.. .|+.
T Consensus 179 Aa~ll~~~~-~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~ 257 (703)
T 3v97_A 179 AAAIVMRSG-WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSS 257 (703)
T ss_dssp HHHHHHHTT-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHhhC-CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCc
Confidence 445556555 888889999999999999988765 3457
Q ss_pred eEEEeec-hHHHHhCCCC-------CCceEEEcccCC-CCC--C-C-CEEEec
Q 024046 223 KAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVP--E-G-DAILMK 262 (273)
Q Consensus 223 ~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~-~~p--~-~-D~~~l~ 262 (273)
++++.|+ |.+++.|+.+ ++|++..+|+++ ..| . . |+|++.
T Consensus 258 ~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~N 310 (703)
T 3v97_A 258 HFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSN 310 (703)
T ss_dssp CEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEEC
T ss_pred cEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeC
Confidence 8999998 8888877653 569999999987 223 2 3 888764
No 261
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=97.15 E-value=0.00058 Score=62.64 Aligned_cols=71 Identities=20% Similarity=0.175 Sum_probs=55.3
Q ss_pred hhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcccCCC---CCC-C-CE
Q 024046 190 EHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFES---VPE-G-DA 258 (273)
Q Consensus 190 ~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-----~ri~~~~gD~f~~---~p~-~-D~ 258 (273)
..++ ..+..+|||+|||+|..+..+++..|+.+++++|. |..++.++.+ -+++++.+|+... ++. . |+
T Consensus 240 ~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~ 318 (429)
T 1sqg_A 240 TWLA-PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDR 318 (429)
T ss_dssp HHHC-CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEE
T ss_pred HHcC-CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCE
Confidence 3344 55678999999999999999999999989999998 6656655432 2589999999872 443 3 99
Q ss_pred EEe
Q 024046 259 ILM 261 (273)
Q Consensus 259 ~~l 261 (273)
|++
T Consensus 319 Vl~ 321 (429)
T 1sqg_A 319 ILL 321 (429)
T ss_dssp EEE
T ss_pred EEE
Confidence 986
No 262
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Probab=97.15 E-value=0.00065 Score=58.64 Aligned_cols=65 Identities=20% Similarity=0.198 Sum_probs=54.5
Q ss_pred hHHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC--CCceEEEcccCC
Q 024046 184 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--AGVEHVGGNMFE 251 (273)
Q Consensus 184 ~~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~--~ri~~~~gD~f~ 251 (273)
..+.+++.+. ..+...+||.+||.|.++..|+++ +.+.+++|. |.+++.|++. +|++++.+||-+
T Consensus 10 Ll~e~le~L~-~~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~L~~~rv~lv~~~f~~ 77 (285)
T 1wg8_A 10 LYQEALDLLA-VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRH 77 (285)
T ss_dssp THHHHHHHHT-CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGG
T ss_pred HHHHHHHhhC-CCCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHhhccCCEEEEECCcch
Confidence 3567777776 777789999999999999999998 778999998 8887665432 699999999976
No 263
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=97.15 E-value=0.00047 Score=51.98 Aligned_cols=67 Identities=21% Similarity=0.174 Sum_probs=51.7
Q ss_pred HHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChh
Q 024046 38 PMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPV 108 (273)
Q Consensus 38 ~~aL~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~ 108 (273)
..+|....++.|+..|...|+.|+.|||+.+|+ ++..+.+.|+.|...|++.....+....|++++.
T Consensus 36 ~~al~~~~rl~IL~~L~~~~~~s~~eLa~~l~i----s~stvs~~L~~L~~~Glv~~~~~gr~~~y~l~~~ 102 (122)
T 1u2w_A 36 LKAIADENRAKITYALCQDEELCVCDIANILGV----TIANASHHLRTLYKQGVVNFRKEGKLALYSLGDE 102 (122)
T ss_dssp HHHHHSHHHHHHHHHHHHSSCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC----CCEEEESCH
T ss_pred HHHhCCHHHHHHHHHHHHCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEECCEEEEEECHH
Confidence 445555678889999986589999999999999 9999999999999999998631111225666654
No 264
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=97.09 E-value=0.00043 Score=49.68 Aligned_cols=69 Identities=13% Similarity=0.181 Sum_probs=55.3
Q ss_pred HHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecccc---CCCcceecChhchH
Q 024046 39 MATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVS---GGERLYALNPVSKY 111 (273)
Q Consensus 39 ~aL~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~---~~~~~y~lt~~s~~ 111 (273)
.++....++.|+..|...++.|+.+||+.+|+ ++..+.+.|+.|...|+++.... .....|.+|+.+..
T Consensus 11 ~~l~~~~~~~iL~~L~~~~~~~~~ela~~l~i----s~~tvs~~l~~L~~~gli~~~~~~~~~r~~~~~lt~~g~~ 82 (100)
T 1ub9_A 11 HILGNPVRLGIMIFLLPRRKAPFSQIQKVLDL----TPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGME 82 (100)
T ss_dssp HHHHSHHHHHHHHHHHHHSEEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHH
T ss_pred cccCChHHHHHHHHHHhcCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEecCCCcceEEEEECHHHHH
Confidence 46666778889998876579999999999999 99999999999999999985310 12236888887743
No 265
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=97.07 E-value=0.00043 Score=49.60 Aligned_cols=66 Identities=12% Similarity=0.145 Sum_probs=51.4
Q ss_pred HHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhc
Q 024046 40 ATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVS 109 (273)
Q Consensus 40 aL~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s 109 (273)
++....++.|+..|...++.|+.|||+.+|+ ++..+.+.|+.|...|++.....+....|.+|+.+
T Consensus 20 ~l~~~~~~~il~~l~~~~~~s~~ela~~l~i----s~~tvs~~l~~L~~~glv~~~~~~r~~~y~l~~~~ 85 (99)
T 3cuo_A 20 AMSHPKRLLILCMLSGSPGTSAGELTRITGL----SASATSQHLARMRDEGLIDSQRDAQRILYSIKNEA 85 (99)
T ss_dssp HHCSHHHHHHHHHHTTCCSEEHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEEEECSSCEEEEECCHH
T ss_pred HhCChHHHHHHHHHHhCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEecCCEEEEEEChHH
Confidence 3344567788888987559999999999999 99999999999999999987421122357777654
No 266
>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*
Probab=97.07 E-value=0.00058 Score=65.56 Aligned_cols=97 Identities=22% Similarity=0.258 Sum_probs=62.6
Q ss_pred chhhhhhcCcchHHHHHHHHHhcchhhHHHHHhhcc---cCCCcceEEEecCCccHHH---HHHHHHC-CCCeEEEeech
Q 024046 158 HIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYE---GFQNVERLVDVGGGFGVTL---SMITSKY-PQIKAVNFDLP 230 (273)
Q Consensus 158 ~~~~~~~~~~~~~~~f~~am~~~~~~~~~~il~~~~---~~~~~~~vvDVGGG~G~~~---~~l~~~~-P~l~~~~~Dlp 230 (273)
..|+.+++|+-+-+.|.+|+.. .+.+..+ ...+...|+|||+|+|-+. ...+++. -.+++..++-.
T Consensus 322 ~tYevFEkD~vKy~~Ye~AI~~-------Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEkn 394 (637)
T 4gqb_A 322 QTYEVFEKDPIKYSQYQQAIYK-------CLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKN 394 (637)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH-------HHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESC
T ss_pred hhhhhhcCChhhHHHHHHHHHH-------HHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 3577888888766667766532 2222211 1224567999999999883 3333332 22467888874
Q ss_pred HHHHhCCC-------CCCceEEEcccCC-CCCCC-CEEEe
Q 024046 231 HVVQDAPS-------YAGVEHVGGNMFE-SVPEG-DAILM 261 (273)
Q Consensus 231 ~v~~~a~~-------~~ri~~~~gD~f~-~~p~~-D~~~l 261 (273)
.++..+.+ .++|+++.||+.+ ..|+- |+++.
T Consensus 395 p~A~~a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIVS 434 (637)
T 4gqb_A 395 PNAVVTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIVS 434 (637)
T ss_dssp HHHHHHHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEEC
T ss_pred HHHHHHHHHHHhccCCCeEEEEeCcceeccCCcccCEEEE
Confidence 44444443 1899999999998 78875 98763
No 267
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}
Probab=97.07 E-value=0.00038 Score=58.55 Aligned_cols=50 Identities=12% Similarity=0.110 Sum_probs=36.7
Q ss_pred HHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCC
Q 024046 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAP 237 (273)
Q Consensus 187 ~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~ 237 (273)
.+++.++......+|||||||+|.++..++++ +..+++++|+ |.+++.+.
T Consensus 27 ~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~-g~~~V~gvDis~~ml~~a~ 77 (232)
T 3opn_A 27 KALKEFHLEINGKTCLDIGSSTGGFTDVMLQN-GAKLVYALDVGTNQLAWKI 77 (232)
T ss_dssp HHHHHTTCCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSCCCCCHHH
T ss_pred HHHHHcCCCCCCCEEEEEccCCCHHHHHHHhc-CCCEEEEEcCCHHHHHHHH
Confidence 44555541224579999999999999999988 3348999998 66665543
No 268
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45
Probab=97.06 E-value=0.00047 Score=63.58 Aligned_cols=77 Identities=21% Similarity=0.085 Sum_probs=56.7
Q ss_pred HHHhhcccCCCcceEEEecCCccHHHHHHHHHC-------------CCCeEEEeec-hHHHHhCCCC------C--CceE
Q 024046 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-------------PQIKAVNFDL-PHVVQDAPSY------A--GVEH 244 (273)
Q Consensus 187 ~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-------------P~l~~~~~Dl-p~v~~~a~~~------~--ri~~ 244 (273)
.+++... .....+|+|.|||+|.++..+.+.. +..+++++|+ |.++..|+.+ . ++++
T Consensus 162 ~mv~~l~-~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i 240 (445)
T 2okc_A 162 AMVDCIN-PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPI 240 (445)
T ss_dssp HHHHHHC-CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSE
T ss_pred HHHHHhC-CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCE
Confidence 3444444 4456799999999999999998864 5577999998 8877766531 2 7889
Q ss_pred EEcccCCC-CCCC-CEEEeccc
Q 024046 245 VGGNMFES-VPEG-DAILMKVG 264 (273)
Q Consensus 245 ~~gD~f~~-~p~~-D~~~l~~v 264 (273)
..||.+.. .... |+|+..--
T Consensus 241 ~~gD~l~~~~~~~fD~Iv~NPP 262 (445)
T 2okc_A 241 VCEDSLEKEPSTLVDVILANPP 262 (445)
T ss_dssp EECCTTTSCCSSCEEEEEECCC
T ss_pred eeCCCCCCcccCCcCEEEECCC
Confidence 99999983 3333 99887643
No 269
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=97.06 E-value=0.00032 Score=52.55 Aligned_cols=67 Identities=15% Similarity=0.171 Sum_probs=54.8
Q ss_pred HHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhc
Q 024046 38 PMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVS 109 (273)
Q Consensus 38 ~~aL~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s 109 (273)
..+|....++.|+..|.+ ||.|+.|||+.+|+ +...+.+.|+.|...|++.....+..-.|++++.+
T Consensus 12 ~~al~~~~R~~Il~~L~~-~~~~~~eLa~~l~i----s~~tvs~hL~~L~~~GlV~~~~~gr~~~y~l~~~~ 78 (118)
T 3f6o_A 12 FQALADPTRRAVLGRLSR-GPATVSELAKPFDM----ALPSFMKHIHFLEDSGWIRTHKQGRVRTCAIEKEP 78 (118)
T ss_dssp HHHHTSHHHHHHHHHHHT-CCEEHHHHHTTCCS----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSHH
T ss_pred HHHhCCHHHHHHHHHHHh-CCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCeEEEecCCEEEEEECHHH
Confidence 456666788999999986 89999999999999 99999999999999999986421222468887754
No 270
>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}
Probab=97.06 E-value=0.00029 Score=64.29 Aligned_cols=65 Identities=22% Similarity=0.371 Sum_probs=51.5
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC--------CCceEEEcccCCCCC-----CCCEEE
Q 024046 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFESVP-----EGDAIL 260 (273)
Q Consensus 195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~--------~ri~~~~gD~f~~~p-----~~D~~~ 260 (273)
+....+|||+|||+|..+..+++.. .+++.+|. |.+++.|+.+ ++|+++.+|+++.++ ..|+|+
T Consensus 91 l~~g~~VLDLgcG~G~~al~LA~~g--~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~ 168 (410)
T 3ll7_A 91 IREGTKVVDLTGGLGIDFIALMSKA--SQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIY 168 (410)
T ss_dssp SCTTCEEEESSCSSSHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEE
T ss_pred cCCCCEEEEeCCCchHHHHHHHhcC--CEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEE
Confidence 3346899999999999999998874 58999998 8877776532 579999999997322 239998
Q ss_pred e
Q 024046 261 M 261 (273)
Q Consensus 261 l 261 (273)
+
T Consensus 169 l 169 (410)
T 3ll7_A 169 V 169 (410)
T ss_dssp E
T ss_pred E
Confidence 7
No 271
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=97.05 E-value=0.0002 Score=64.85 Aligned_cols=65 Identities=9% Similarity=0.001 Sum_probs=51.3
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------C--CceEEEcccCCCCC------CC-CEE
Q 024046 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------A--GVEHVGGNMFESVP------EG-DAI 259 (273)
Q Consensus 196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~--ri~~~~gD~f~~~p------~~-D~~ 259 (273)
.+..+|||+|||+|.++..+++... .+++++|+ |.+++.|+.+ + +++++.+|.++.++ .. |+|
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~ga-~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~I 289 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGGA-MATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII 289 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTTB-SEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred cCCCeEEEEeeccCHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEE
Confidence 4568999999999999999998632 37899998 8888877642 3 89999999987322 23 998
Q ss_pred Ee
Q 024046 260 LM 261 (273)
Q Consensus 260 ~l 261 (273)
++
T Consensus 290 i~ 291 (385)
T 2b78_A 290 II 291 (385)
T ss_dssp EE
T ss_pred EE
Confidence 87
No 272
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=97.02 E-value=0.00063 Score=47.07 Aligned_cols=58 Identities=16% Similarity=0.307 Sum_probs=48.8
Q ss_pred HHhChhHHHHhCC---CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecCh
Q 024046 45 IQLGVFEIIAKAG---ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP 107 (273)
Q Consensus 45 ~elglfd~L~~~g---~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~ 107 (273)
.+..|++.|...+ +.|+.|||+.+|+ +...+.+.|+-|...|++...+ ..++.|.+++
T Consensus 15 ~~~~IL~~L~~~~~~~~~t~~eLA~~Lgv----s~~tV~~~L~~L~~~G~I~~~g-~~~~~W~i~~ 75 (77)
T 1qgp_A 15 QEQRILKFLEELGEGKATTAHDLSGKLGT----PKKEINRVLYSLAKKGKLQKEA-GTPPLWKIAV 75 (77)
T ss_dssp HHHHHHHHHHHHCSSSCEEHHHHHHHHCC----CHHHHHHHHHHHHHHTSEEEEC-SSSCEEEECC
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEecC-CCCCceEecC
Confidence 3566888888877 8999999999999 9999999999999999998753 2457777765
No 273
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=97.02 E-value=0.00025 Score=64.38 Aligned_cols=64 Identities=19% Similarity=0.242 Sum_probs=51.6
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCCCC------CCC-CEEEe
Q 024046 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESV------PEG-DAILM 261 (273)
Q Consensus 197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~~------p~~-D~~~l 261 (273)
+..+|||+|||+|.++..+++. +..+++++|+ |..++.|+.+ ++++++.+|.++.. +.. |+|++
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~ 295 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 295 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence 6689999999999999999987 4457999998 8888777642 28999999998732 223 99987
No 274
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=97.01 E-value=0.00041 Score=64.35 Aligned_cols=66 Identities=9% Similarity=0.038 Sum_probs=53.3
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHHhCCCC------CCceEEEcccCC-C--CCCC-CEEEe
Q 024046 195 FQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-S--VPEG-DAILM 261 (273)
Q Consensus 195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~-l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~-~--~p~~-D~~~l 261 (273)
.....+|||+|||+|..+..+++..++ .+++.+|+ |..++.++++ . |+++.+|... + .+.. |+|++
T Consensus 99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~~~~~~FD~Il~ 176 (464)
T 3m6w_A 99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAEAFGTYFHRVLL 176 (464)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHHHHCSCEEEEEE
T ss_pred cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhhhccccCCEEEE
Confidence 456789999999999999999999876 68999998 7777766542 4 8999999876 2 3443 99986
No 275
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=97.01 E-value=0.00057 Score=53.14 Aligned_cols=59 Identities=20% Similarity=0.182 Sum_probs=44.4
Q ss_pred CCCcceEEEecCCccH-HHHHHHHHCCCCeEEEeec-hHHHHhCCCCCCceEEEcccCCCCC---CC-CEEEecc
Q 024046 195 FQNVERLVDVGGGFGV-TLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFESVP---EG-DAILMKV 263 (273)
Q Consensus 195 ~~~~~~vvDVGGG~G~-~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~ri~~~~gD~f~~~p---~~-D~~~l~~ 263 (273)
+....++||||||.|. .+..|++. -+..+++.|+ |..++ ++..|+|+|.. ++ |+|+..|
T Consensus 33 ~~~~~rVlEVG~G~g~~vA~~La~~-~g~~V~atDInp~Av~---------~v~dDiF~P~~~~Y~~~DLIYsir 97 (153)
T 2k4m_A 33 SGPGTRVVEVGAGRFLYVSDYIRKH-SKVDLVLTDIKPSHGG---------IVRDDITSPRMEIYRGAALIYSIR 97 (153)
T ss_dssp SCSSSEEEEETCTTCCHHHHHHHHH-SCCEEEEECSSCSSTT---------EECCCSSSCCHHHHTTEEEEEEES
T ss_pred CCCCCcEEEEccCCChHHHHHHHHh-CCCeEEEEECCccccc---------eEEccCCCCcccccCCcCEEEEcC
Confidence 4456799999999995 77777764 3577899997 54443 89999999766 24 8887654
No 276
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=96.95 E-value=0.0038 Score=47.63 Aligned_cols=92 Identities=10% Similarity=0.081 Sum_probs=60.7
Q ss_pred hhhhhHHHHHHHHHHhhhhHHHHHH-----HHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCce
Q 024046 18 EEEEEESYSHAMQLAMGVVLPMATQ-----AAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVL 92 (273)
Q Consensus 18 ~~~~~~~~~~l~~~~~g~~~~~aL~-----~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll 92 (273)
+++.......+...+...+...+-. +..+..++..|...|+.|..+||+.+++ ++..+.++++-|...|++
T Consensus 6 ~~~l~~~l~~~~~~~~~~~~~~l~~~~~~lt~~~~~vL~~l~~~~~~t~~eLa~~l~~----~~~tvs~~l~~L~~~Glv 81 (142)
T 3ech_A 6 NPDLMPALMAVFQHVRTRIQSELDCQRLDLTPPDVHVLKLIDEQRGLNLQDLGRQMCR----DKALITRKIRELEGRNLV 81 (142)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTCCHHHHHHHHC-------CHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhCCCcCHHHHHHHhCC----CHHHHHHHHHHHHHCCCE
Confidence 3444455555555554443333332 3567778999988789999999999999 999999999999999999
Q ss_pred eccccCCC---cceecChhchHhh
Q 024046 93 ECSVSGGE---RLYALNPVSKYFV 113 (273)
Q Consensus 93 ~~~~~~~~---~~y~lt~~s~~l~ 113 (273)
++.....+ -.+.+|+.++.+.
T Consensus 82 ~r~~~~~DrR~~~~~LT~~G~~~~ 105 (142)
T 3ech_A 82 RRERNPSDQRSFQLFLTDEGLAIH 105 (142)
T ss_dssp EC----------CCEECHHHHHHH
T ss_pred eeccCCCCCCeeeeEECHHHHHHH
Confidence 97421111 2477888776554
No 277
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=96.94 E-value=0.00027 Score=63.90 Aligned_cols=63 Identities=21% Similarity=0.188 Sum_probs=51.3
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCCCC------CCC-CEEEe
Q 024046 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESV------PEG-DAILM 261 (273)
Q Consensus 197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~~~------p~~-D~~~l 261 (273)
+..+|||+|||+|.++..+++. ..+++++|+ |..++.|+.+ ++++++.+|.++.. +.. |+|++
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~ 285 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVL 285 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEE
Confidence 6689999999999999999998 567899998 8888877642 45999999998732 233 99887
No 278
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=96.90 E-value=0.0013 Score=45.64 Aligned_cols=44 Identities=18% Similarity=0.187 Sum_probs=39.9
Q ss_pred hChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceec
Q 024046 47 LGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (273)
Q Consensus 47 lglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~ 94 (273)
..|++.|...|+.|+.|||+.+|+ +...+.+.|..|...|++..
T Consensus 3 ~~Il~~L~~~~~~s~~eLa~~lgv----s~~tv~r~L~~L~~~GlI~~ 46 (81)
T 2htj_A 3 NEILEFLNRHNGGKTAEIAEALAV----TDYQARYYLLLLEKAGMVQR 46 (81)
T ss_dssp HHHHHHHHHSCCCCHHHHHHHHTS----CHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEE
Confidence 457788877679999999999999 99999999999999999984
No 279
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=96.88 E-value=0.00092 Score=49.52 Aligned_cols=63 Identities=14% Similarity=0.243 Sum_probs=51.1
Q ss_pred HHhChhHHHHhCCCCC--HHHHHHHh-CcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhchHhh
Q 024046 45 IQLGVFEIIAKAGELS--APEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFV 113 (273)
Q Consensus 45 ~elglfd~L~~~g~~t--~~eLA~~~-g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~~l~ 113 (273)
.++.|+..|.. |+.+ +.||++.+ |+ ++..+.+.|+.|...|++++... ..-.|.+|+.++.+.
T Consensus 28 wrl~IL~~L~~-g~~~~~~~eL~~~l~gi----s~~~ls~~L~~Le~~GlV~r~~~-r~~~y~LT~~G~~l~ 93 (111)
T 3df8_A 28 YTMLIISVLGN-GSTRQNFNDIRSSIPGI----SSTILSRRIKDLIDSGLVERRSG-QITTYALTEKGMNVR 93 (111)
T ss_dssp THHHHHHHHTS-SSSCBCHHHHHHTSTTC----CHHHHHHHHHHHHHTTSEEEEES-SSEEEEECHHHHHHH
T ss_pred cHHHHHHHHhc-CCCCCCHHHHHHHccCC----CHHHHHHHHHHHHHCCCEEEeec-CcEEEEECccHHHHH
Confidence 34555666764 7888 99999999 99 99999999999999999997432 345799999987654
No 280
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=96.87 E-value=0.00058 Score=61.40 Aligned_cols=52 Identities=13% Similarity=0.096 Sum_probs=43.4
Q ss_pred cceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCC
Q 024046 198 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE 251 (273)
Q Consensus 198 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~ 251 (273)
..+|+|+|||+|.++..+++.. .+++++|. |.+++.|+.+ ++++++.+|.++
T Consensus 214 ~~~vLDl~cG~G~~~l~la~~~--~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~ 272 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALARNF--DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEE 272 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGGGS--SEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHH
T ss_pred CCEEEEccCCCCHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHH
Confidence 3689999999999999998864 36899998 8888877542 689999999876
No 281
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=96.85 E-value=0.00075 Score=52.98 Aligned_cols=70 Identities=19% Similarity=0.290 Sum_probs=57.9
Q ss_pred hHHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhch
Q 024046 36 VLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (273)
Q Consensus 36 ~~~~aL~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~ 110 (273)
-...+|..-.++.|+..|.. |+.|+.+||+.+|+ +...+.+.|+.|...|+|+....+..-.|++|+.+.
T Consensus 50 ~~l~aL~~p~R~~IL~~L~~-~~~t~~eLa~~lgl----s~stvs~hL~~L~~aGlV~~~~~Gr~~~y~lt~~~~ 119 (151)
T 3f6v_A 50 DQLEVAAEPTRRRLVQLLTS-GEQTVNNLAAHFPA----SRSAISQHLRVLTEAGLVTPRKDGRFRYYRLDPQGL 119 (151)
T ss_dssp CHHHHHTSHHHHHHHHHGGG-CCEEHHHHHTTSSS----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHh-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEecCCEEEEEEChHHH
Confidence 35677778899999999985 89999999999999 999999999999999999864212223688888653
No 282
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=96.84 E-value=0.00089 Score=49.32 Aligned_cols=64 Identities=16% Similarity=0.211 Sum_probs=50.2
Q ss_pred HHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhch
Q 024046 42 QAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (273)
Q Consensus 42 ~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~ 110 (273)
....++.|+..|.. |+.|+.|||+.+|+ ++..+.++|+.|...|++..........|.+|+.+.
T Consensus 19 ~~~~r~~IL~~L~~-~~~~~~ela~~l~i----s~~tv~~~l~~L~~~gli~~~~~gr~~~y~l~~~~~ 82 (114)
T 2oqg_A 19 SDETRWEILTELGR-ADQSASSLATRLPV----SRQAIAKHLNALQACGLVESVKVGREIRYRALGAEL 82 (114)
T ss_dssp TCHHHHHHHHHHHH-SCBCHHHHHHHSSS----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSHHH
T ss_pred CChHHHHHHHHHHc-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeeEEecCCEEEEEechHHH
Confidence 33456778888854 79999999999999 999999999999999999863211223488887653
No 283
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=96.84 E-value=0.00078 Score=50.44 Aligned_cols=66 Identities=17% Similarity=0.157 Sum_probs=52.1
Q ss_pred HHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChh
Q 024046 38 PMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPV 108 (273)
Q Consensus 38 ~~aL~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~ 108 (273)
..+|..-.++.|+..|.. |+.++.|||+.+|+ ++..+.+.|+.|...|++.....+..-.|++|+.
T Consensus 15 ~~aL~~~~r~~IL~~L~~-~~~~~~eLa~~lgi----s~stvs~~L~~L~~~GlV~~~~~gr~~~y~l~~~ 80 (118)
T 2jsc_A 15 GRALADPTRCRILVALLD-GVCYPGQLAAHLGL----TRSNVSNHLSCLRGCGLVVATYEGRQVRYALADS 80 (118)
T ss_dssp HHHHSSHHHHHHHHHHHT-TCCSTTTHHHHHSS----CHHHHHHHHHHHTTTTSEEEEECSSSEEEEESSH
T ss_pred HHHhCCHHHHHHHHHHHc-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEEEECCEEEEEEChH
Confidence 345555677888888885 79999999999999 9999999999999999998642112235777764
No 284
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=96.83 E-value=0.00092 Score=48.94 Aligned_cols=62 Identities=21% Similarity=0.331 Sum_probs=47.5
Q ss_pred HHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecCh
Q 024046 41 TQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP 107 (273)
Q Consensus 41 L~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~ 107 (273)
+..-.++.|+..|.. |+.|+.|||+.+|+ ++..+.+.|+.|...|++.....+....|++++
T Consensus 23 l~~~~r~~IL~~L~~-~~~~~~ela~~l~i----s~stvs~~L~~L~~~Glv~~~~~gr~~~y~l~~ 84 (106)
T 1r1u_A 23 LGDYNRIRIMELLSV-SEASVGHISHQLNL----SQSNVSHQLKLLKSVHLVKAKRQGQSMIYSLDD 84 (106)
T ss_dssp TCSHHHHHHHHHHHH-CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEESS
T ss_pred hCCHHHHHHHHHHHh-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECh
Confidence 334566778888885 79999999999999 999999999999999999864211112455554
No 285
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=96.80 E-value=0.00047 Score=62.53 Aligned_cols=66 Identities=18% Similarity=0.120 Sum_probs=51.9
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------C-CceEEEcccCCCC------CCC-CEE
Q 024046 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------A-GVEHVGGNMFESV------PEG-DAI 259 (273)
Q Consensus 196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~-ri~~~~gD~f~~~------p~~-D~~ 259 (273)
.+..+|||+|||+|.++..+++.. ..+++++|+ |..++.|+.+ + +++++.+|.++.. +.. |+|
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~I 297 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred hCCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEE
Confidence 456799999999999999999975 457999998 7877776542 2 7899999998732 223 998
Q ss_pred Eec
Q 024046 260 LMK 262 (273)
Q Consensus 260 ~l~ 262 (273)
++.
T Consensus 298 i~d 300 (396)
T 3c0k_A 298 VMD 300 (396)
T ss_dssp EEC
T ss_pred EEC
Confidence 874
No 286
>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}
Probab=96.77 E-value=0.0044 Score=55.80 Aligned_cols=72 Identities=22% Similarity=0.224 Sum_probs=53.3
Q ss_pred cceEEEecCCccHHHHHH--------HHHC-------CCCeEEEeechHH-----H---HhCCC----------C-CC--
Q 024046 198 VERLVDVGGGFGVTLSMI--------TSKY-------PQIKAVNFDLPHV-----V---QDAPS----------Y-AG-- 241 (273)
Q Consensus 198 ~~~vvDVGGG~G~~~~~l--------~~~~-------P~l~~~~~Dlp~v-----~---~~a~~----------~-~r-- 241 (273)
.-+|+|+|||+|..+..+ .+++ |+++++.-|||.- - +.... . .+
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 578999999999987766 4444 8899999999762 1 21111 0 11
Q ss_pred -ceEEEcccCC-CCCCC--CEEEecccccccC
Q 024046 242 -VEHVGGNMFE-SVPEG--DAILMKVGNFENY 269 (273)
Q Consensus 242 -i~~~~gD~f~-~~p~~--D~~~l~~vLHd~~ 269 (273)
+.-++|.|+. .+|.. |+++.+..||--+
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls 164 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLS 164 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEEEESCTTBCS
T ss_pred EEEecChhhhcccCCCcceEEEEecceeeeec
Confidence 5678899998 58865 9999999999755
No 287
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=96.75 E-value=0.00047 Score=50.79 Aligned_cols=64 Identities=20% Similarity=0.269 Sum_probs=48.5
Q ss_pred HHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChh
Q 024046 40 ATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPV 108 (273)
Q Consensus 40 aL~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~ 108 (273)
+|..-.++.|+..|.. |+.|+.|||+.+|+ ++..+.+.|+.|...|++.....+....|++++.
T Consensus 21 al~~~~r~~IL~~L~~-~~~s~~eLa~~lgi----s~stvs~~L~~L~~~GlV~~~~~gr~~~y~l~~~ 84 (108)
T 2kko_A 21 ALANGRRLQILDLLAQ-GERAVEAIATATGM----NLTTASANLQALKSGGLVEARREGTRQYYRIAGE 84 (108)
T ss_dssp HHTTSTTHHHHHHHTT-CCEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEEEETTEEEEEESCH
T ss_pred HhCCHHHHHHHHHHHc-CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEeCCEEEEEEChH
Confidence 3334456677788876 79999999999999 9999999999999999998632111224666653
No 288
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Probab=96.74 E-value=0.0016 Score=58.38 Aligned_cols=69 Identities=14% Similarity=0.104 Sum_probs=54.2
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhCCCCCCceEEEcccCCCCC-CC--CEEEecccc
Q 024046 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVP-EG--DAILMKVGN 265 (273)
Q Consensus 195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~~~ri~~~~gD~f~~~p-~~--D~~~l~~vL 265 (273)
+....++||+|++.|.++-.++++ ..+++.+|.-.+.......++|+++.+|.|.-.| .+ |++++-.+.
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~~~l~~~l~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~ 280 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKR--NMWVYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMVE 280 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHT--TCEEEEECSSCCCHHHHTTTCEEEECSCTTTCCCCSSCEEEEEECCSS
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHC--CCEEEEEEhhhcChhhccCCCeEEEeCccccccCCCCCcCEEEEcCCC
Confidence 456789999999999999999998 6789999974444444456899999999999544 33 888775543
No 289
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=96.65 E-value=0.0011 Score=64.60 Aligned_cols=64 Identities=9% Similarity=0.035 Sum_probs=50.7
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC--------CCceEEEcccCCCC---CCC-CEEEe
Q 024046 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFESV---PEG-DAILM 261 (273)
Q Consensus 197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~--------~ri~~~~gD~f~~~---p~~-D~~~l 261 (273)
...+|||+|||+|.++..+++... .+++.+|+ |..++.|+++ ++++++.+|.++.+ ... |+|++
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~ga-~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~ 615 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGGA-RSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFI 615 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEE
T ss_pred CCCcEEEeeechhHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEE
Confidence 457999999999999999998543 36999998 7888777542 48999999999832 223 99887
No 290
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Probab=96.65 E-value=0.0036 Score=54.86 Aligned_cols=67 Identities=18% Similarity=0.182 Sum_probs=52.3
Q ss_pred CCCcceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhCCCC------CCceEEEcccCCC---CC--C-CCEEE
Q 024046 195 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFES---VP--E-GDAIL 260 (273)
Q Consensus 195 ~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~~---~p--~-~D~~~ 260 (273)
..+..+|||+|||+|..+..+++.. +..+++.+|+ +..++.++++ ++|+++.+|+.+. .+ . .|.|+
T Consensus 100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl 179 (309)
T 2b9e_A 100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL 179 (309)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEE
Confidence 4567899999999999999999985 5678999998 7766665532 6799999999762 11 2 38888
Q ss_pred e
Q 024046 261 M 261 (273)
Q Consensus 261 l 261 (273)
+
T Consensus 180 ~ 180 (309)
T 2b9e_A 180 L 180 (309)
T ss_dssp E
T ss_pred E
Confidence 6
No 291
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}
Probab=96.64 E-value=0.0026 Score=59.26 Aligned_cols=65 Identities=22% Similarity=0.220 Sum_probs=52.9
Q ss_pred CcceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhCCCC------CCceEEEcccCC-C--CCCC-CEEEe
Q 024046 197 NVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-S--VPEG-DAILM 261 (273)
Q Consensus 197 ~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~-~--~p~~-D~~~l 261 (273)
...+|||+|||+|..+..+++..+ ..+++.+|+ +..++.++.+ ++|+++.+|... + .+.. |+|++
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~ 193 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILL 193 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEE
Confidence 668999999999999999999976 478999998 7777766542 579999999987 2 3443 99987
No 292
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}
Probab=96.64 E-value=0.0015 Score=59.35 Aligned_cols=63 Identities=17% Similarity=0.072 Sum_probs=48.5
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcccCCCC---CC-CCEEEe
Q 024046 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFESV---PE-GDAILM 261 (273)
Q Consensus 197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-----~ri~~~~gD~f~~~---p~-~D~~~l 261 (273)
+..+|||+|||+|.++..+++... +++.+|+ |..++.|+.+ -..++..+|.++.+ +. .|+|++
T Consensus 214 ~g~~VLDlg~GtG~~sl~~a~~ga--~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~ 286 (393)
T 4dmg_A 214 PGERVLDVYSYVGGFALRAARKGA--YALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLL 286 (393)
T ss_dssp TTCEEEEESCTTTHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEE
T ss_pred CCCeEEEcccchhHHHHHHHHcCC--eEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEE
Confidence 478999999999999999999854 4999998 8888877653 12357799998732 33 398886
No 293
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=96.62 E-value=0.0017 Score=46.62 Aligned_cols=64 Identities=13% Similarity=0.201 Sum_probs=51.4
Q ss_pred HhChhHHHHhCCCCCHHHH----HHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhchHhh
Q 024046 46 QLGVFEIIAKAGELSAPEI----AAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFV 113 (273)
Q Consensus 46 elglfd~L~~~g~~t~~eL----A~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~~l~ 113 (273)
++.++..|...++.|..+| |+.+++ ++..+.++++.|...|++++....+...|.+|+.+..+.
T Consensus 10 q~~iL~~l~~~~~~~~~el~~~la~~l~i----s~~tvs~~l~~Le~~gli~r~~~~r~~~~~LT~~G~~~~ 77 (99)
T 1tbx_A 10 EAIVLAYLYDNEGIATYDLYKKVNAEFPM----STATFYDAKKFLIQEGFVKERQERGEKRLYLTEKGKLFA 77 (99)
T ss_dssp HHHHHHHHTTCTTCBHHHHHHHHHTTSCC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHcCCcCHHHHHHHHHHHcCC----CHHHHHHHHHHHHHCCCEEEEecCCceEEEECHHHHHHH
Confidence 4557777777679999999 899999 999999999999999999874212334688888887665
No 294
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A
Probab=96.59 E-value=0.0029 Score=61.14 Aligned_cols=96 Identities=16% Similarity=0.137 Sum_probs=60.3
Q ss_pred hhhhhhcCcchHHHHHHHHHhcchhhHHHHHhhcccCCCcceEEEecCCccHHHHHHHHH----C---------CCCeEE
Q 024046 159 IFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSK----Y---------PQIKAV 225 (273)
Q Consensus 159 ~~~~~~~~~~~~~~f~~am~~~~~~~~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~----~---------P~l~~~ 225 (273)
.|+.+.+|+-+.+.|.+|+... +.+.+..-.+...|+|||||+|-+....+++ . ...+++
T Consensus 378 tYe~fekD~vRy~~Y~~AI~~a-------l~d~~~~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVy 450 (745)
T 3ua3_A 378 VYNTFEQDQIKYDVYGEAVVGA-------LKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLY 450 (745)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHH-------HHHHHTTCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEE
T ss_pred HHHHHcCChhhHHHHHHHHHHH-------HHHhhcccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEE
Confidence 5777777877777777766431 2122211124578999999999996432222 2 234788
Q ss_pred Eeec-hHHHHhCCC------CCCceEEEcccCC-CC------CC-CCEEEe
Q 024046 226 NFDL-PHVVQDAPS------YAGVEHVGGNMFE-SV------PE-GDAILM 261 (273)
Q Consensus 226 ~~Dl-p~v~~~a~~------~~ri~~~~gD~f~-~~------p~-~D~~~l 261 (273)
++|- |..+...+. .++|+++.||+.+ .. |+ .|+++-
T Consensus 451 AVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~~~~~ekVDIIVS 501 (745)
T 3ua3_A 451 IVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKDRGFEQPDIIVS 501 (745)
T ss_dssp EEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHHHTTCCCCSEEEE
T ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccccCCCCcccEEEE
Confidence 9987 543322221 2789999999988 45 54 498764
No 295
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=96.59 E-value=0.003 Score=48.42 Aligned_cols=56 Identities=21% Similarity=0.218 Sum_probs=47.1
Q ss_pred HHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhchHhh
Q 024046 51 EIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFV 113 (273)
Q Consensus 51 d~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~~l~ 113 (273)
..+...++.|+.+||+.+|+ ++..+.++++.|...|++... ....|.+|+.+..+.
T Consensus 15 ~l~~~~~~~~~~ela~~l~v----s~~tvs~~l~~Le~~Glv~r~---~~~~~~LT~~g~~~~ 70 (142)
T 1on2_A 15 MLIEEKGYARVSDIAEALAV----HPSSVTKMVQKLDKDEYLIYE---KYRGLVLTSKGKKIG 70 (142)
T ss_dssp HHHHHHSSCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE---TTTEEEECHHHHHHH
T ss_pred HHHhhcCCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEe---eCceEEEchhHHHHH
Confidence 34444468999999999999 999999999999999999973 456799999887654
No 296
>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}
Probab=96.58 E-value=0.0051 Score=54.34 Aligned_cols=67 Identities=13% Similarity=0.148 Sum_probs=56.7
Q ss_pred hHHHHHhhcccCCCcceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhCCC--CCCceEEEcccCC
Q 024046 184 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPS--YAGVEHVGGNMFE 251 (273)
Q Consensus 184 ~~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~--~~ri~~~~gD~f~ 251 (273)
...++++.+. ..+...+||..+|.|..+..++++. |+.+.+++|. |++++.++. .+|++++.++|-+
T Consensus 45 Ll~Evl~~L~-i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~rL~~~Rv~lv~~nF~~ 115 (347)
T 3tka_A 45 LLDEAVNGLN-IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPFSA 115 (347)
T ss_dssp TTHHHHHHTC-CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHTTCCCTTEEEEESCGGG
T ss_pred cHHHHHHhhC-CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 3467778776 6677899999999999999999985 8899999998 888887753 2799999999976
No 297
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=96.57 E-value=0.0032 Score=46.11 Aligned_cols=62 Identities=18% Similarity=0.231 Sum_probs=47.9
Q ss_pred hChhHHHHhCCCCCHHHHHHHh-CcCCCCCcchHHHHHHHHhcCCceeccccCCC---cceecChhchHhh
Q 024046 47 LGVFEIIAKAGELSAPEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV 113 (273)
Q Consensus 47 lglfd~L~~~g~~t~~eLA~~~-g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---~~y~lt~~s~~l~ 113 (273)
+.|+..|.. |+.++.||++.+ |+ ++..+.+.|+.|...|++++.....+ -.|.+|+.+..+.
T Consensus 17 ~~IL~~L~~-~~~~~~eLa~~l~~i----s~~tls~~L~~Le~~GlI~r~~~~~d~r~~~y~LT~~G~~l~ 82 (107)
T 2hzt_A 17 XVILXHLTH-GKKRTSELKRLMPNI----TQKMLTQQLRELEADGVINRIVYNQVPPKVEYELSEYGRSLE 82 (107)
T ss_dssp HHHHHHHTT-CCBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGH
T ss_pred HHHHHHHHh-CCCCHHHHHHHhcCC----CHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECccHHHHH
Confidence 335556654 799999999999 99 99999999999999999997432111 2588888775543
No 298
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=96.57 E-value=0.0019 Score=48.63 Aligned_cols=63 Identities=19% Similarity=0.313 Sum_probs=48.7
Q ss_pred HHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChh
Q 024046 41 TQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPV 108 (273)
Q Consensus 41 L~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~ 108 (273)
|....++.|+..|.+ |+.++.+||+.+|+ ++..+.+.|+.|...|++.....+..-.|++++.
T Consensus 43 L~~~~rl~IL~~L~~-~~~s~~ela~~lgi----s~stvs~~L~~Le~~Glv~~~~~gr~~~y~l~~~ 105 (122)
T 1r1t_A 43 LADPNRLRLLSLLAR-SELCVGDLAQAIGV----SESAVSHQLRSLRNLRLVSYRKQGRHVYYQLQDH 105 (122)
T ss_dssp HCCHHHHHHHHHHTT-CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEESSH
T ss_pred hCCHHHHHHHHHHHc-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEeCCEEEEEEChH
Confidence 334467778888876 79999999999999 9999999999999999998632111124666653
No 299
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=96.56 E-value=0.0032 Score=45.29 Aligned_cols=56 Identities=13% Similarity=0.252 Sum_probs=48.1
Q ss_pred ChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhchHhh
Q 024046 48 GVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFV 113 (273)
Q Consensus 48 glfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~~l~ 113 (273)
.|+..|.. | .+..+||..+|+ +++.+...++.|...|+++. ..+.|.+|+.+..+.
T Consensus 12 ~IL~~i~~-~-~~~t~La~~~~l----s~~~~~~~l~~L~~~GLI~~----~~~~~~LT~kG~~~l 67 (95)
T 1r7j_A 12 AILEACKS-G-SPKTRIMYGANL----SYALTGRYIKMLMDLEIIRQ----EGKQYMLTKKGEELL 67 (95)
T ss_dssp HHHHHHTT-C-BCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE----ETTEEEECHHHHHHH
T ss_pred HHHHHHHc-C-CCHHHHHHHhCc----CHHHHHHHHHHHHHCCCeEE----ECCeeEEChhHHHHH
Confidence 35566654 5 899999999999 99999999999999999997 345699999998665
No 300
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=96.56 E-value=0.0019 Score=45.11 Aligned_cols=60 Identities=15% Similarity=0.130 Sum_probs=48.0
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhc
Q 024046 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVS 109 (273)
Q Consensus 44 a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s 109 (273)
.....|++.|...| .|+.|||+.+|+ +...+++.|.-|...|++.... ..+-.|+++...
T Consensus 17 ~~~~~IL~lL~~~g-~sa~eLAk~Lgi----Sk~aVr~~L~~Le~eG~I~~~~-~~PP~W~~~~~~ 76 (82)
T 1oyi_A 17 EIVCEAIKTIGIEG-ATAAQLTRQLNM----EKREVNKALYDLQRSAMVYSSD-DIPPRWFMTTEA 76 (82)
T ss_dssp HHHHHHHHHHSSST-EEHHHHHHHSSS----CHHHHHHHHHHHHHHTSSEECS-SSSCEEESCC--
T ss_pred HHHHHHHHHHHHcC-CCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeCC-CCCCcceeccCc
Confidence 45567888998765 999999999999 9999999999999999999743 233567777643
No 301
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=96.55 E-value=0.0058 Score=46.28 Aligned_cols=66 Identities=15% Similarity=0.140 Sum_probs=53.6
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccC---CCcceecChhchHhh
Q 024046 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSG---GERLYALNPVSKYFV 113 (273)
Q Consensus 44 a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~---~~~~y~lt~~s~~l~ 113 (273)
..++.++..|...++.|..+||+.+++ ++..+.+.++-|...|+++..... +.-.|.+|+.+..+.
T Consensus 31 ~~~~~iL~~l~~~~~~~~~ela~~l~i----s~~~vs~~l~~L~~~gli~~~~~~~d~r~~~~~lT~~G~~~~ 99 (142)
T 3bdd_A 31 LTRYSILQTLLKDAPLHQLALQERLQI----DRAAVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREAL 99 (142)
T ss_dssp HHHHHHHHHHHHHCSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 345668888887679999999999999 999999999999999999874321 123588999887766
No 302
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=96.54 E-value=0.0019 Score=55.64 Aligned_cols=57 Identities=18% Similarity=0.309 Sum_probs=47.7
Q ss_pred hChhHHHHhCC-CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhch
Q 024046 47 LGVFEIIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (273)
Q Consensus 47 lglfd~L~~~g-~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~ 110 (273)
+.|+++|...+ +.|+.|||+.+|+ +..-+.|+|.-|+..|+++.+ .++.|++++..-
T Consensus 33 l~IL~~l~~~~~~ltl~eia~~lgl----~ksTv~RlL~tL~~~G~v~~~---~~~~Y~LG~~~~ 90 (275)
T 3mq0_A 33 VRILDLVAGSPRDLTAAELTRFLDL----PKSSAHGLLAVMTELDLLARS---ADGTLRIGPHSL 90 (275)
T ss_dssp HHHHHHHHHCSSCEEHHHHHHHHTC----C--CHHHHHHHHHHTTSEEEC---TTSEEEECTHHH
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEC---CCCcEEehHHHH
Confidence 45888898754 7999999999999 999999999999999999984 457899998643
No 303
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=96.53 E-value=0.0028 Score=53.75 Aligned_cols=64 Identities=16% Similarity=0.217 Sum_probs=54.3
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhchHhhc
Q 024046 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVS 114 (273)
Q Consensus 45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~~l~~ 114 (273)
.++.|+..|...++.|+.|||+.+|+ +...+.|.|+.|...|+++.. .+...|.+|+.+..+..
T Consensus 153 ~~~~IL~~L~~~~~~s~~eLA~~lgl----sksTv~r~L~~Le~~GlV~r~--~r~~~~~LT~~G~~l~~ 216 (244)
T 2wte_A 153 EEMKLLNVLYETKGTGITELAKMLDK----SEKTLINKIAELKKFGILTQK--GKDRKVELNELGLNVIK 216 (244)
T ss_dssp HHHHHHHHHHHHTCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE--TTTTEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe--CCccEEEECHHHHHHHH
Confidence 45567778766679999999999999 999999999999999999975 24578999999876643
No 304
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=96.47 E-value=0.0029 Score=43.81 Aligned_cols=43 Identities=26% Similarity=0.316 Sum_probs=40.4
Q ss_pred hhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecc
Q 024046 49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (273)
Q Consensus 49 lfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~ 95 (273)
|.+.|.+.|..+++|||+.+++ ++.-++|.|+.|...|++.+.
T Consensus 7 Il~~L~~~g~vsv~eLa~~l~V----S~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 7 VRDLLALRGRMEAAQISQTLNT----PQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHSCSBCHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHcCCCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence 6788888899999999999999 999999999999999999874
No 305
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=96.47 E-value=0.0032 Score=56.83 Aligned_cols=65 Identities=9% Similarity=-0.068 Sum_probs=50.9
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC---------------------CCceEEEcccCCC--
Q 024046 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---------------------AGVEHVGGNMFES-- 252 (273)
Q Consensus 197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~---------------------~ri~~~~gD~f~~-- 252 (273)
...+|||+|||+|.+++.++++.|..+++.+|+ |..++.++.+ ++|+++.+|....
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~ 126 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 126 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence 457899999999999999999999889999998 7777665431 2388999998762
Q ss_pred -CCC-CCEEEe
Q 024046 253 -VPE-GDAILM 261 (273)
Q Consensus 253 -~p~-~D~~~l 261 (273)
.+. .|+|++
T Consensus 127 ~~~~~fD~I~l 137 (378)
T 2dul_A 127 ERHRYFHFIDL 137 (378)
T ss_dssp HSTTCEEEEEE
T ss_pred hccCCCCEEEe
Confidence 233 388774
No 306
>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A
Probab=96.45 E-value=0.0013 Score=52.19 Aligned_cols=58 Identities=12% Similarity=-0.051 Sum_probs=46.2
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC--CCceEEEcccCC-CC---CCC--CEEEecccc
Q 024046 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--AGVEHVGGNMFE-SV---PEG--DAILMKVGN 265 (273)
Q Consensus 195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~--~ri~~~~gD~f~-~~---p~~--D~~~l~~vL 265 (273)
.....+|||||||. +.+|. +.+++.|++. .+++++.+|+.+ +. +.+ |+|++..+|
T Consensus 10 ~~~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l 73 (176)
T 2ld4_A 10 ISAGQFVAVVWDKS----------------SPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVP 73 (176)
T ss_dssp CCTTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCST
T ss_pred CCCCCEEEEecCCc----------------eeeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChh
Confidence 56779999999996 23787 7788877653 469999999987 44 543 999999999
Q ss_pred ccc
Q 024046 266 FEN 268 (273)
Q Consensus 266 Hd~ 268 (273)
|+.
T Consensus 74 ~~~ 76 (176)
T 2ld4_A 74 GST 76 (176)
T ss_dssp TCC
T ss_pred hhc
Confidence 988
No 307
>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*
Probab=96.44 E-value=0.0043 Score=53.91 Aligned_cols=59 Identities=19% Similarity=0.296 Sum_probs=45.0
Q ss_pred CCCcceEEEecCCc------cHHHHHHHHHCC-CCeEEEeec-hHHHHhCCCCCCceE-EEcccCC-CCCCC-CEEEec
Q 024046 195 FQNVERLVDVGGGF------GVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSYAGVEH-VGGNMFE-SVPEG-DAILMK 262 (273)
Q Consensus 195 ~~~~~~vvDVGGG~------G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~~~ri~~-~~gD~f~-~~p~~-D~~~l~ 262 (273)
+++..+|||||||+ |. ..+++..| +.+++++|+ |. .+++++ +.+|+.+ +.+.. |+|+..
T Consensus 61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-------v~~v~~~i~gD~~~~~~~~~fD~Vvsn 130 (290)
T 2xyq_A 61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-------VSDADSTLIGDCATVHTANKWDLIISD 130 (290)
T ss_dssp CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-------BCSSSEEEESCGGGCCCSSCEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-------CCCCEEEEECccccCCccCcccEEEEc
Confidence 56678999999955 66 45567777 689999998 44 247999 9999998 44443 999974
No 308
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=96.43 E-value=0.0017 Score=60.11 Aligned_cols=67 Identities=12% Similarity=0.065 Sum_probs=53.1
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHHhCCCC------CCceEEEcccCC-C--CCCC-CEEEe
Q 024046 195 FQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-S--VPEG-DAILM 261 (273)
Q Consensus 195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~-l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~-~--~p~~-D~~~l 261 (273)
.....+|||+|||+|..+..+++..++ .+++.+|+ +..++.++++ .+|+++.+|... + .+.. |+|++
T Consensus 103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~ 181 (456)
T 3m4x_A 103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVV 181 (456)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEE
Confidence 556789999999999999999998765 68899998 7767666542 579999999876 2 3443 99987
No 309
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=96.42 E-value=0.0027 Score=44.88 Aligned_cols=43 Identities=23% Similarity=0.348 Sum_probs=40.4
Q ss_pred hhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecc
Q 024046 49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (273)
Q Consensus 49 lfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~ 95 (273)
|.+.|.+.|..+++|||+.+++ ++.-++|.|+.|...|++.+.
T Consensus 7 Il~~L~~~g~vsv~eLA~~l~V----S~~TIRrDL~~Le~~G~l~R~ 49 (87)
T 2k02_A 7 VRDMLALQGRMEAKQLSARLQT----PQPLIDAMLERMEAMGKVVRI 49 (87)
T ss_dssp HHHHHHHSCSEEHHHHHHHTTC----CHHHHHHHHHHHHTTCCSEEE
T ss_pred HHHHHHHcCCCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 6788888899999999999999 999999999999999999974
No 310
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=96.33 E-value=0.017 Score=45.33 Aligned_cols=66 Identities=21% Similarity=0.256 Sum_probs=52.7
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCC---cceecChhchHhh
Q 024046 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV 113 (273)
Q Consensus 44 a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---~~y~lt~~s~~l~ 113 (273)
..++.++..|...++.|..+||+.+++ ++..+.++++.|...|++++.....+ -.+.+|+.+..+.
T Consensus 45 ~~~~~iL~~L~~~~~~t~~eLa~~l~i----s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~ 113 (168)
T 2nyx_A 45 IPQFRTLVILSNHGPINLATLATLLGV----QPSATGRMVDRLVGAELIDRLPHPTSRRELLAALTKRGRDVV 113 (168)
T ss_dssp HHHHHHHHHHHHHCSEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHH
Confidence 355668888887679999999999999 99999999999999999987421111 2478888887654
No 311
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=96.33 E-value=0.0021 Score=46.46 Aligned_cols=66 Identities=18% Similarity=0.225 Sum_probs=49.1
Q ss_pred HHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhc
Q 024046 39 MATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVS 109 (273)
Q Consensus 39 ~aL~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s 109 (273)
.+|....++.|+..|...|+.++.|||+.+|+ ++..+.+.|+.|... ++.....+..-.|++++..
T Consensus 22 ~aL~~~~Rl~IL~~l~~~~~~~~~ela~~l~i----s~stvs~hL~~L~~~-lv~~~~~gr~~~y~l~~~~ 87 (99)
T 2zkz_A 22 KTMAHPMRLKIVNELYKHKALNVTQIIQILKL----PQSTVSQHLCKMRGK-VLKRNRQGLEIYYSINNPK 87 (99)
T ss_dssp HHHCSHHHHHHHHHHHHHSCEEHHHHHHHHTC----CHHHHHHHHHHHBTT-TBEEEEETTEEEEECCCHH
T ss_pred HHhCCHHHHHHHHHHHHCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHH-hhhheEeCcEEEEEEChHH
Confidence 34445677788855544489999999999999 999999999999999 9985321122357777643
No 312
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=96.28 E-value=0.0073 Score=46.08 Aligned_cols=66 Identities=15% Similarity=0.235 Sum_probs=53.1
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCC---cceecChhchHhh
Q 024046 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV 113 (273)
Q Consensus 44 a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---~~y~lt~~s~~l~ 113 (273)
..+..++..|...++.|..+||+.+++ ++..+.++++-|...|++++.....+ -.+.+|+.+..+.
T Consensus 31 ~~q~~iL~~l~~~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 99 (145)
T 3g3z_A 31 YNLFAVLYTLATEGSRTQKHIGEKWSL----PKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKAYA 99 (145)
T ss_dssp HHHHHHHHHHHHHCSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeeccCCCCCceeeeeEChhHHHHH
Confidence 356668888877789999999999999 99999999999999999997321112 2588898887654
No 313
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=96.28 E-value=0.0057 Score=46.72 Aligned_cols=76 Identities=14% Similarity=0.109 Sum_probs=57.0
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhCCCCCHHHHHHHh-CcCCCCCcchHHHHHHHHhcCCceeccccCC---
Q 024046 24 SYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSGG--- 99 (273)
Q Consensus 24 ~~~~l~~~~~g~~~~~aL~~a~elglfd~L~~~g~~t~~eLA~~~-g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~--- 99 (273)
+...+++++.+-|....|. .|.. |+.++.||++.+ |+ ++..|.+.|+.|...|+|++.....
T Consensus 15 pi~~~l~~lg~kW~l~IL~---------~L~~-g~~rf~eL~~~l~gI----s~~~Ls~~L~~Le~~GLV~R~~~~~d~r 80 (131)
T 4a5n_A 15 PVEFTLDVIGGKWKGILFY---------HMID-GKKRFNEFRRICPSI----TQRMLTLQLRELEADGIVHREVYHQVPP 80 (131)
T ss_dssp HHHHHHHHHCSSSHHHHHH---------HHTT-SCBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEEECSSSC
T ss_pred cHHHHHHHHcCcCHHHHHH---------HHhc-CCcCHHHHHHHhccc----CHHHHHHHHHHHHHCCCEEEEecCCCCC
Confidence 3455566666666555443 4444 799999999999 99 9999999999999999999743211
Q ss_pred CcceecChhchHhh
Q 024046 100 ERLYALNPVSKYFV 113 (273)
Q Consensus 100 ~~~y~lt~~s~~l~ 113 (273)
.-.|.+|+.++.+.
T Consensus 81 ~v~y~LT~~G~~l~ 94 (131)
T 4a5n_A 81 KVEYSLTEFGRTLE 94 (131)
T ss_dssp EEEEEECTTGGGGH
T ss_pred eEEEEECHhHHHHH
Confidence 13699999987665
No 314
>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*
Probab=96.25 E-value=0.0081 Score=54.21 Aligned_cols=72 Identities=14% Similarity=0.099 Sum_probs=53.0
Q ss_pred cceEEEecCCccHHHHHHHHH-----------------CCCCeEEEeechH------------HHHhC-----CCCCC--
Q 024046 198 VERLVDVGGGFGVTLSMITSK-----------------YPQIKAVNFDLPH------------VVQDA-----PSYAG-- 241 (273)
Q Consensus 198 ~~~vvDVGGG~G~~~~~l~~~-----------------~P~l~~~~~Dlp~------------v~~~a-----~~~~r-- 241 (273)
.-+|+|+||++|..+..+... .|+++++.-|||. ..+.+ ...+.
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 678999999999988877766 5889999999982 11111 11122
Q ss_pred ceEEEcccCC-CCCCC--CEEEecccccccC
Q 024046 242 VEHVGGNMFE-SVPEG--DAILMKVGNFENY 269 (273)
Q Consensus 242 i~~~~gD~f~-~~p~~--D~~~l~~vLHd~~ 269 (273)
+.-++|.|+. .+|.. |+++.+..||=-+
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls 163 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCYCLHWLS 163 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEESCTTBCS
T ss_pred EEecchhhhhccCCCCceEEEEecceeeecC
Confidence 4667899998 68875 9999999999544
No 315
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=96.21 E-value=0.0034 Score=52.92 Aligned_cols=60 Identities=17% Similarity=0.228 Sum_probs=50.0
Q ss_pred hChhHHHHhCC-CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhchHh
Q 024046 47 LGVFEIIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYF 112 (273)
Q Consensus 47 lglfd~L~~~g-~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~~l 112 (273)
+.|+++|...+ +.|+.|||+.+|+ +...+.|+|+.|...|+++.. ...+.|++++..-.+
T Consensus 9 l~iL~~l~~~~~~~s~~ela~~~gl----~~stv~r~l~~L~~~G~v~~~--~~~~~Y~lg~~~~~l 69 (241)
T 2xrn_A 9 ASIMRALGSHPHGLSLAAIAQLVGL----PRSTVQRIINALEEEFLVEAL--GPAGGFRLGPALGQL 69 (241)
T ss_dssp HHHHHHHHTCTTCEEHHHHHHHTTS----CHHHHHHHHHHHHTTTSEEEC--GGGCEEEECSHHHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe--CCCCeEEECHHHHHH
Confidence 45788887654 7999999999999 999999999999999999974 234789999865443
No 316
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=96.19 E-value=0.006 Score=45.01 Aligned_cols=60 Identities=15% Similarity=0.164 Sum_probs=47.6
Q ss_pred hhHHHHhCCCCCHHHHHHHh-CcCCCCCcchHHHHHHHHhcCCceeccccCCC---cceecChhchHhh
Q 024046 49 VFEIIAKAGELSAPEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV 113 (273)
Q Consensus 49 lfd~L~~~g~~t~~eLA~~~-g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---~~y~lt~~s~~l~ 113 (273)
|+..|.. |+.+..|||+.+ ++ ++..+.+.|+-|...|+++......+ -.|.+|+.+..+.
T Consensus 27 IL~~L~~-~~~~~~eLa~~l~~i----s~~tvs~~L~~Le~~GlI~r~~~~~d~r~~~~~LT~~G~~~~ 90 (112)
T 1z7u_A 27 LMDELFQ-GTKRNGELMRALDGI----TQRVLTDRLREMEKDGLVHRESFNELPPRVEYTLTPEGYALY 90 (112)
T ss_dssp HHHHHHH-SCBCHHHHHHHSTTC----CHHHHHHHHHHHHHHTSEEEEEECCSSCEEEEEECHHHHHHH
T ss_pred HHHHHHh-CCCCHHHHHHHhccC----CHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECHhHHHHH
Confidence 4455665 799999999999 99 99999999999999999997432111 2589999887554
No 317
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=96.18 E-value=0.0059 Score=51.64 Aligned_cols=58 Identities=14% Similarity=0.178 Sum_probs=49.4
Q ss_pred HhChhHHHHhCC-CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhch
Q 024046 46 QLGVFEIIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (273)
Q Consensus 46 elglfd~L~~~g-~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~ 110 (273)
-+.|++.|...+ +.|+.|||+.+|+ +...+.|+|+.|...|+++.. ..+.|++++..-
T Consensus 10 ~l~iL~~l~~~~~~~~~~ela~~~gl----~~stv~r~l~~L~~~G~v~~~---~~~~Y~lg~~~~ 68 (249)
T 1mkm_A 10 AFEILDFIVKNPGDVSVSEIAEKFNM----SVSNAYKYMVVLEEKGFVLRK---KDKRYVPGYKLI 68 (249)
T ss_dssp HHHHHHHHHHCSSCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEC---TTSCEEECTHHH
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEC---CCCcEEECHHHH
Confidence 345788887755 7999999999999 999999999999999999973 457899988643
No 318
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=96.10 E-value=0.038 Score=42.30 Aligned_cols=64 Identities=14% Similarity=0.262 Sum_probs=48.9
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccc--cCCC---cceecChhchHhh
Q 024046 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSV--SGGE---RLYALNPVSKYFV 113 (273)
Q Consensus 45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~--~~~~---~~y~lt~~s~~l~ 113 (273)
.+..++..| ..++.|..+||+.+++ ++..+.++++-|...|++++.. ...+ -.+.+|+.+..+.
T Consensus 39 ~q~~iL~~l-~~~~~t~~eLa~~l~~----~~~~vs~~l~~Le~~Glv~r~~~~~~~D~R~~~~~lT~~G~~~~ 107 (151)
T 3kp7_A 39 EQSHVLNML-SIEALTVGQITEKQGV----NKAAVSRRVKKLLNAELVKLEKPDSNTDQRLKIIKLSNKGKKYI 107 (151)
T ss_dssp HHHHHHHHH-HHSCBCHHHHHHHHCS----CSSHHHHHHHHHHHTTSEEC-----------CCBEECHHHHHHH
T ss_pred HHHHHHHHH-HcCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeCCCCCCCCCeeEEEECHhHHHHH
Confidence 445588888 6689999999999999 9999999999999999999620 0122 2467788776554
No 319
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=96.10 E-value=0.022 Score=43.26 Aligned_cols=65 Identities=8% Similarity=0.015 Sum_probs=51.3
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCC---cceecChhchHhh
Q 024046 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV 113 (273)
Q Consensus 44 a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---~~y~lt~~s~~l~ 113 (273)
..++.++..|. .++.|..+||+.+++ ++..+.++++-|...|+++......+ -.+.+|+.+..+.
T Consensus 37 ~~~~~iL~~l~-~~~~~~~ela~~l~~----s~~tvs~~l~~Le~~glv~r~~~~~d~r~~~~~lT~~G~~~~ 104 (146)
T 2gxg_A 37 YLDFLVLRATS-DGPKTMAYLANRYFV----TQSAITASVDKLEEMGLVVRVRDREDRRKILIEITEKGLETF 104 (146)
T ss_dssp HHHHHHHHHHT-TSCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHh-cCCcCHHHHHHHhCC----CchhHHHHHHHHHHCCCEEeecCCCCCceEEEEECHHHHHHH
Confidence 35666788888 689999999999999 99999999999999999987421111 2477888776554
No 320
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=96.07 E-value=0.0078 Score=45.35 Aligned_cols=66 Identities=17% Similarity=0.299 Sum_probs=52.1
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCC---cceecChhchHhh
Q 024046 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV 113 (273)
Q Consensus 44 a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---~~y~lt~~s~~l~ 113 (273)
..++.++..|...++.|..+||+.+++ ++..+.++++-|...|++.......+ -.+.+|+.+..+.
T Consensus 33 ~~~~~iL~~l~~~~~~~~~ela~~l~~----~~~tvs~~l~~L~~~gli~r~~~~~d~r~~~~~lT~~G~~~~ 101 (139)
T 3bja_A 33 YVQFGVIQVLAKSGKVSMSKLIENMGC----VPSNMTTMIQRMKRDGYVMTEKNPNDQRETLVYLTKKGEETK 101 (139)
T ss_dssp HHHHHHHHHHHHSCSEEHHHHHHHCSS----CCTTHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHCC----ChhHHHHHHHHHHHCCCeeeccCCCCCceeEEEECHHHHHHH
Confidence 355668888887779999999999999 99999999999999999987421111 2477888876654
No 321
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=96.07 E-value=0.011 Score=46.09 Aligned_cols=66 Identities=17% Similarity=0.202 Sum_probs=53.4
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCC---cceecChhchHhh
Q 024046 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV 113 (273)
Q Consensus 44 a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---~~y~lt~~s~~l~ 113 (273)
..+..++..|...|+.|..+||+.+++ ++..+.++++-|...|++++.....+ -.+.+|+.+..++
T Consensus 46 ~~q~~iL~~l~~~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~ 114 (162)
T 3k0l_A 46 LPQFTALSVLAAKPNLSNAKLAERSFI----KPQSANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDKL 114 (162)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHTS----CGGGHHHHHHHHHHTTSEEEEECCSSSCCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCcCeEecCCCCcCCeeEeEECHhHHHHH
Confidence 345668888888789999999999999 99999999999999999997432112 2588888887655
No 322
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=96.06 E-value=0.0073 Score=46.02 Aligned_cols=63 Identities=14% Similarity=0.170 Sum_probs=49.3
Q ss_pred HhChhHHHHhCCCCCHHHHHHHh-CcCCCCCcchHHHHHHHHhcCCceeccccCCC---cceecChhchHhh
Q 024046 46 QLGVFEIIAKAGELSAPEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV 113 (273)
Q Consensus 46 elglfd~L~~~g~~t~~eLA~~~-g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---~~y~lt~~s~~l~ 113 (273)
++.|+..|.. |+.++.||++.+ |+ ++..+.+.|+.|...|+|++.....+ -.|.+|+.+..+.
T Consensus 37 ~l~IL~~L~~-g~~~~~eLa~~l~gi----s~~tls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~l~ 103 (131)
T 1yyv_A 37 GVLILVALRD-GTHRFSDLRRXMGGV----SEXMLAQSLQALEQDGFLNRVSYPVVPPHVEYSLTPLGEQVS 103 (131)
T ss_dssp HHHHHHHGGG-CCEEHHHHHHHSTTC----CHHHHHHHHHHHHHHTCEEEEEECSSSCEEEEEECHHHHHHH
T ss_pred HHHHHHHHHc-CCCCHHHHHHHhccC----CHHHHHHHHHHHHHCCcEEEEecCCCCCeEEEEECccHHHHH
Confidence 3445556664 799999999999 79 99999999999999999997422111 2699999887654
No 323
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=96.05 E-value=0.008 Score=45.33 Aligned_cols=65 Identities=23% Similarity=0.154 Sum_probs=51.3
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCC---cceecChhchHhh
Q 024046 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV 113 (273)
Q Consensus 45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---~~y~lt~~s~~l~ 113 (273)
.++.++..|...++.|..+||+.+++ ++..+.++++-|...|+++......+ -.+.+|+.+..+.
T Consensus 35 ~~~~iL~~l~~~~~~~~~~la~~l~~----~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~ 102 (138)
T 1jgs_A 35 AQFKVLCSIRCAACITPVELKKVLSV----DLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAIC 102 (138)
T ss_dssp HHHHHHHHHHHHSSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHCC----ChHHHHHHHHHHHHCCCEEecCCcccCceeEeEEChhHHHHH
Confidence 45557777877679999999999999 99999999999999999997421112 2478888877654
No 324
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=96.04 E-value=0.005 Score=42.49 Aligned_cols=44 Identities=18% Similarity=0.179 Sum_probs=38.9
Q ss_pred ChhHHHHhC------CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecc
Q 024046 48 GVFEIIAKA------GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (273)
Q Consensus 48 glfd~L~~~------g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~ 95 (273)
.|++.|.+. +|.|+.|||+.+|+ ++..+++-|..|...|++...
T Consensus 8 ~IL~~I~~~i~~~~g~~psv~EIa~~lgv----S~~TVrr~L~~Le~kG~I~R~ 57 (77)
T 2jt1_A 8 KIISIVQERQNMDDGAPVKTRDIADAAGL----SIYQVRLYLEQLHDVGVLEKV 57 (77)
T ss_dssp HHHHHHHHHHHHHTTSCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhhccCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCcEEec
Confidence 366667665 59999999999999 999999999999999999974
No 325
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=96.03 E-value=0.0075 Score=45.44 Aligned_cols=66 Identities=14% Similarity=0.158 Sum_probs=51.4
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCC---cceecChhchHhh
Q 024046 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV 113 (273)
Q Consensus 44 a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---~~y~lt~~s~~l~ 113 (273)
..++.++..|...++.|..+||+.+++ ++..+.++++-|...|+++......+ -.+.+|+.+..+.
T Consensus 29 ~~~~~iL~~l~~~~~~~~~ela~~l~~----s~~tvs~~l~~L~~~glv~~~~~~~d~R~~~~~lT~~G~~~~ 97 (138)
T 3bpv_A 29 DAQVACLLRIHREPGIKQDELATFFHV----DKGTIARTLRRLEESGFIEREQDPENRRRYILEVTRRGEEII 97 (138)
T ss_dssp HHHHHHHHHHHHSTTCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHTH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeecCCCCceeEEeeECHhHHHHH
Confidence 345567778877679999999999999 99999999999999999997321111 2377888776554
No 326
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=96.02 E-value=0.025 Score=43.47 Aligned_cols=65 Identities=12% Similarity=0.097 Sum_probs=52.2
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceec--cccCCC---cceecChhchHhh
Q 024046 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC--SVSGGE---RLYALNPVSKYFV 113 (273)
Q Consensus 45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~--~~~~~~---~~y~lt~~s~~l~ 113 (273)
.++.++..|...++.|..+||+.+++ ++..+.++++-|...|++++ .....+ -.+.+|+.+..+.
T Consensus 42 ~~~~iL~~l~~~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT~~G~~~~ 111 (154)
T 2qww_A 42 QQLAMINVIYSTPGISVADLTKRLII----TGSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSKKGEDLS 111 (154)
T ss_dssp HHHHHHHHHHHSTTEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEECHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecCcCCCCCCceeEeEECHHHHHHH
Confidence 45668888887779999999999999 99999999999999999997 211122 2588888887654
No 327
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=96.01 E-value=0.0051 Score=42.64 Aligned_cols=47 Identities=15% Similarity=0.264 Sum_probs=41.6
Q ss_pred HHhChhHHHHhC--CCCCHHHHHHHh-----CcCCCCCcchHHHHHHHHhcCCceecc
Q 024046 45 IQLGVFEIIAKA--GELSAPEIAAQL-----QAQNVKAPMMLDRMLRLLVSHRVLECS 95 (273)
Q Consensus 45 ~elglfd~L~~~--g~~t~~eLA~~~-----g~~~~~~~~~l~rlL~~L~~~gll~~~ 95 (273)
-+..|++.|.+. ++.|++||++.+ ++ +..-+.|.|+.|+..|++.+.
T Consensus 18 ~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~i----s~~TVyR~L~~L~~~Glv~~~ 71 (83)
T 2fu4_A 18 PRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEI----GLATVYRVLNQFDDAGIVTRH 71 (83)
T ss_dssp HHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCC----CHhhHHHHHHHHHHCCCeEEE
Confidence 456688888764 589999999999 88 999999999999999999975
No 328
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=95.99 E-value=0.0088 Score=45.75 Aligned_cols=66 Identities=12% Similarity=0.193 Sum_probs=51.7
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccC---CCcceecChhchHhh
Q 024046 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSG---GERLYALNPVSKYFV 113 (273)
Q Consensus 44 a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~---~~~~y~lt~~s~~l~ 113 (273)
..++.++..|...|+.|..+||+.+++ ++..+.++++-|...|+++..... +...+.+|+.+..+.
T Consensus 40 ~~~~~iL~~l~~~~~~t~~ela~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~lT~~G~~~~ 108 (148)
T 3nrv_A 40 MTEWRIISVLSSASDCSVQKISDILGL----DKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELY 108 (148)
T ss_dssp HHHHHHHHHHHHSSSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC---------CCBEECHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeecCCCCcceeEeEECHhHHHHH
Confidence 456678888888789999999999999 999999999999999999974211 123577888776654
No 329
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=95.99 E-value=0.0064 Score=44.43 Aligned_cols=75 Identities=16% Similarity=0.196 Sum_probs=54.1
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHhChhHHHHhCCCCCHHHHHHHh-CcCCCCCcchHHHHHHHHhcCCceeccccCCC---
Q 024046 25 YSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE--- 100 (273)
Q Consensus 25 ~~~l~~~~~g~~~~~aL~~a~elglfd~L~~~g~~t~~eLA~~~-g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~--- 100 (273)
...+++++.+.+... |+..|.. |+.++.||++.+ |+ ++..+.+.|+.|...|++++.....+
T Consensus 15 ~~~~l~~l~~~~~~~---------IL~~L~~-~~~~~~eL~~~l~gi----s~~~ls~~L~~Le~~GlV~r~~~~~d~r~ 80 (107)
T 2fsw_A 15 VRKSMQIFAGKWTLL---------IIFQINR-RIIRYGELKRAIPGI----SEKMLIDELKFLCGKGLIKKKQYPEVPPR 80 (107)
T ss_dssp HHHHHHHHTSSSHHH---------HHHHHTT-SCEEHHHHHHHSTTC----CHHHHHHHHHHHHHTTSEEEEEECSSSCE
T ss_pred HHHHHHHHcCccHHH---------HHHHHHh-CCcCHHHHHHHcccC----CHHHHHHHHHHHHHCCCEEEeecCCCCCe
Confidence 445555555555443 3445553 799999999999 59 99999999999999999997422111
Q ss_pred cceecChhchHhh
Q 024046 101 RLYALNPVSKYFV 113 (273)
Q Consensus 101 ~~y~lt~~s~~l~ 113 (273)
-.|.+|+.++.+.
T Consensus 81 ~~y~LT~~G~~l~ 93 (107)
T 2fsw_A 81 VEYSLTPLGEKVL 93 (107)
T ss_dssp EEEEECHHHHTTH
T ss_pred eEEEECccHHHHH
Confidence 3599999886544
No 330
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=95.98 E-value=0.0036 Score=56.76 Aligned_cols=66 Identities=14% Similarity=-0.013 Sum_probs=51.8
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHHhCCCC-------CC-ceEEEcccCCC----CCCC-CEEE
Q 024046 196 QNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPSY-------AG-VEHVGGNMFES----VPEG-DAIL 260 (273)
Q Consensus 196 ~~~~~vvDVGGG~G~~~~~l~~~~P~-l~~~~~Dl-p~v~~~a~~~-------~r-i~~~~gD~f~~----~p~~-D~~~ 260 (273)
.+..+|||++||+|.+++.++++.+. .+++.+|+ |..++.++++ ++ ++++.+|.++- .+.. |+|+
T Consensus 51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~ 130 (392)
T 3axs_A 51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVD 130 (392)
T ss_dssp CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEE
T ss_pred CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEE
Confidence 35689999999999999999998766 46899998 8877776542 45 99999998762 2333 8887
Q ss_pred e
Q 024046 261 M 261 (273)
Q Consensus 261 l 261 (273)
+
T Consensus 131 l 131 (392)
T 3axs_A 131 L 131 (392)
T ss_dssp E
T ss_pred E
Confidence 6
No 331
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=95.98 E-value=0.0083 Score=46.54 Aligned_cols=60 Identities=22% Similarity=0.214 Sum_probs=46.9
Q ss_pred hhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCC--CcceecChhchHhh
Q 024046 49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGG--ERLYALNPVSKYFV 113 (273)
Q Consensus 49 lfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~--~~~y~lt~~s~~l~ 113 (273)
|+..|.. |+.++.||++.+|+ ++..+.+.|+.|...|++++..... .-.|.+|+.+..+.
T Consensus 29 IL~~L~~-g~~~~~eLa~~lgi----s~~tls~~L~~Le~~GlI~r~~~~~d~~~~y~LT~~G~~l~ 90 (146)
T 2f2e_A 29 IVRDAFE-GLTRFGEFQKSLGL----AKNILAARLRNLVEHGVMVAVPAESGSHQEYRLTDKGRALF 90 (146)
T ss_dssp HHHHHHT-TCCSHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEEEECSSSSCEEEEECHHHHTTH
T ss_pred HHHHHHh-CCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEEecCCCCeEEEEECchHHHHH
Confidence 3445544 79999999999999 9999999999999999999742101 23689999876543
No 332
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=95.97 E-value=0.0026 Score=54.37 Aligned_cols=58 Identities=17% Similarity=0.229 Sum_probs=48.7
Q ss_pred hChhHHHHhC-CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhch
Q 024046 47 LGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (273)
Q Consensus 47 lglfd~L~~~-g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~ 110 (273)
+.|+++|... ++.|+.|||+.+|+ +..-+.|+|.-|+..|+++.+ ...+.|++++..-
T Consensus 9 l~IL~~l~~~~~~lsl~eia~~lgl----~ksT~~RlL~tL~~~G~v~~~--~~~~~Y~lG~~~~ 67 (260)
T 3r4k_A 9 LTLLTYFNHGRLEIGLSDLTRLSGM----NKATVYRLMSELQEAGFVEQV--EGARSYRLGPQVL 67 (260)
T ss_dssp HHHHTTCBTTBSEEEHHHHHHHHCS----CHHHHHHHHHHHHHTTSEEEC--SSSSEEEECTTHH
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEc--CCCCcEEcCHHHH
Confidence 4577777753 58999999999999 999999999999999999985 2338999998643
No 333
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=95.96 E-value=0.0071 Score=45.62 Aligned_cols=66 Identities=11% Similarity=0.175 Sum_probs=52.3
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCC---cceecChhchHhh
Q 024046 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV 113 (273)
Q Consensus 44 a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---~~y~lt~~s~~l~ 113 (273)
..++.++..|...++.|..+||+.+++ ++..+.++++-|...|+++......+ -.+.+|+.+..+.
T Consensus 38 ~~~~~iL~~l~~~~~~t~~ela~~l~~----~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 106 (140)
T 2nnn_A 38 PTQWAALVRLGETGPCPQNQLGRLTAM----DAATIKGVVERLDKRGLIQRSADPDDGRRLLVSLSPAGRAEL 106 (140)
T ss_dssp HHHHHHHHHHHHHSSBCHHHHHHHTTC----CHHHHHHHHHHHHHTTCEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeCCCCCCCeeeeEECHhHHHHH
Confidence 346668888877679999999999999 99999999999999999997421111 2478888876554
No 334
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=95.96 E-value=0.0067 Score=46.19 Aligned_cols=66 Identities=20% Similarity=0.203 Sum_probs=52.6
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecccc---CCCcceecChhchHhh
Q 024046 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVS---GGERLYALNPVSKYFV 113 (273)
Q Consensus 44 a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~---~~~~~y~lt~~s~~l~ 113 (273)
..+..++..|...|+.|..+||+.+++ ++..+.++++-|...|++++... .+.-.+.+|+.+..+.
T Consensus 37 ~~~~~iL~~l~~~~~~t~~eLa~~l~~----~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 105 (143)
T 3oop_A 37 PEQWSVLEGIEANEPISQKEIALWTKK----DTPTVNRIVDVLLRKELIVREISTEDRRISLLSLTDKGRKET 105 (143)
T ss_dssp HHHHHHHHHHHHHSSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC----CCSCEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHCC----CHhhHHHHHHHHHHCCCeeccCCCccCceeeeeECHHHHHHH
Confidence 455667888877689999999999999 99999999999999999997421 1123578888887654
No 335
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=95.94 E-value=0.018 Score=44.73 Aligned_cols=65 Identities=17% Similarity=0.219 Sum_probs=50.4
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecccc---CCCcceecChhchHhh
Q 024046 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVS---GGERLYALNPVSKYFV 113 (273)
Q Consensus 45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~---~~~~~y~lt~~s~~l~ 113 (273)
.++.++..|...++.|..+||+.+++ ++..+.++++-|...|++++... .+...+.+|+.+..+.
T Consensus 50 ~~~~iL~~l~~~~~~t~~ela~~l~i----s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 117 (162)
T 2fa5_A 50 PEWRVITILALYPGSSASEVSDRTAM----DKVAVSRAVARLLERGFIRRETHGDDRRRSMLALSPAGRQVY 117 (162)
T ss_dssp HHHHHHHHHHHSTTCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC---------CCCEECHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeeecCCCCCCeeEEEECHHHHHHH
Confidence 45568888887779999999999999 99999999999999999997321 0113577888776554
No 336
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=95.93 E-value=0.023 Score=43.13 Aligned_cols=65 Identities=8% Similarity=0.167 Sum_probs=52.0
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCc---ceecChhchHhh
Q 024046 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (273)
Q Consensus 44 a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~---~y~lt~~s~~l~ 113 (273)
..++.++..|...++ |..+||+.+++ ++..+.++++-|...|++++.....+. .+.+|+.+..+.
T Consensus 37 ~~~~~iL~~l~~~~~-~~~~la~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 104 (144)
T 3f3x_A 37 YLDFSILKATSEEPR-SMVYLANRYFV----TQSAITAAVDKLEAKGLVRRIRDSKDRRIVIVEITPKGRQVL 104 (144)
T ss_dssp HHHHHHHHHHHHSCE-EHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHCCC-CHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEeccCCCCCceEEEEECHHHHHHH
Confidence 356678888888666 99999999999 999999999999999999974211111 488898887654
No 337
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=95.91 E-value=0.014 Score=44.43 Aligned_cols=67 Identities=19% Similarity=0.197 Sum_probs=52.9
Q ss_pred HHHHhChhHHHHh-CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccC---CCcceecChhchHhh
Q 024046 43 AAIQLGVFEIIAK-AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSG---GERLYALNPVSKYFV 113 (273)
Q Consensus 43 ~a~elglfd~L~~-~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~---~~~~y~lt~~s~~l~ 113 (273)
+..++.++..|.. .++.|..+||+.+|+ ++..+.++++-|...|+++..... +.-.+.+|+.+..+.
T Consensus 34 ~~~~~~iL~~l~~~~~~~~~~~la~~l~i----~~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 104 (147)
T 2hr3_A 34 QFSQLVVLGAIDRLGGDVTPSELAAAERM----RSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNL 104 (147)
T ss_dssp HHHHHHHHHHHHHTTSCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCHHHHHHHhCC----ChhhHHHHHHHHHHCCCEeeCCCCCCCCceeeEECHHHHHHH
Confidence 3456778888887 689999999999999 999999999999999999874211 112477888876554
No 338
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=95.90 E-value=0.0097 Score=45.56 Aligned_cols=65 Identities=9% Similarity=0.109 Sum_probs=51.2
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCC---cceecChhchHhh
Q 024046 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV 113 (273)
Q Consensus 45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---~~y~lt~~s~~l~ 113 (273)
.++.++..|...|+.|..+||+.+++ ++..+.++++-|...|++.......+ -.+.+|+.+..+.
T Consensus 43 ~~~~iL~~l~~~~~~t~~ela~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~ 110 (150)
T 2rdp_A 43 PQFVALQWLLEEGDLTVGELSNKMYL----ACSTTTDLVDRMERNGLVARVRDEHDRRVVRIRLLEKGERII 110 (150)
T ss_dssp HHHHHHHHHHHHCSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECCC---CEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCC----CchhHHHHHHHHHHCCCeeecCCCCCcceeEeEECHhHHHHH
Confidence 45567888877679999999999999 99999999999999999987421111 2477888776554
No 339
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=95.84 E-value=0.023 Score=43.64 Aligned_cols=66 Identities=14% Similarity=0.049 Sum_probs=51.3
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccC---CCcceecChhchHhh
Q 024046 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSG---GERLYALNPVSKYFV 113 (273)
Q Consensus 44 a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~---~~~~y~lt~~s~~l~ 113 (273)
..+..++..|...++.|..+||+.+++ ++..+.++++-|...|++++.... +.-.+.+|+.+..+.
T Consensus 41 ~~q~~iL~~l~~~~~~~~~eLa~~l~~----~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 109 (149)
T 4hbl_A 41 YSQYLVMLTLWEENPQTLNSIGRHLDL----SSNTLTPMLKRLEQSGWVKRERQQSDKRQLIITLTDNGQQQQ 109 (149)
T ss_dssp HHHHHHHHHHHHSSSEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEC---------CEEEECSHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeeCCCCCCcceeeeeECHHHHHHH
Confidence 356668888887789999999999999 999999999999999999974211 112577888776554
No 340
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=95.83 E-value=0.034 Score=42.67 Aligned_cols=64 Identities=20% Similarity=0.225 Sum_probs=50.5
Q ss_pred HhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCC---cceecChhchHhh
Q 024046 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV 113 (273)
Q Consensus 46 elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---~~y~lt~~s~~l~ 113 (273)
++.|+..|...++.|..+||+.+++ ++..+.++++-|...|+++......+ -.+.+|+.+..+.
T Consensus 39 ~~~iL~~l~~~~~~t~~ela~~l~~----s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 105 (155)
T 1s3j_A 39 QLFVLASLKKHGSLKVSEIAERMEV----KPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKF 105 (155)
T ss_dssp HHHHHHHHHHHSEEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeecCCCCCCceEEEEECHHHHHHH
Confidence 4557888877679999999999999 99999999999999999987421111 2477888776554
No 341
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=95.80 E-value=0.011 Score=44.81 Aligned_cols=65 Identities=9% Similarity=0.021 Sum_probs=51.1
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCC---cceecChhchHhh
Q 024046 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV 113 (273)
Q Consensus 45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---~~y~lt~~s~~l~ 113 (273)
.++.++..|...++.|..+||+.+++ ++..+.++++-|...|++.......+ -.+.+|+.+..+.
T Consensus 30 ~~~~iL~~l~~~~~~t~~~la~~l~~----s~~~vs~~l~~Le~~gli~r~~~~~d~R~~~~~lT~~G~~~~ 97 (144)
T 1lj9_A 30 GQYLYLVRVCENPGIIQEKIAELIKV----DRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVY 97 (144)
T ss_dssp THHHHHHHHHHSTTEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHCcCcCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEeecCCCCCceeeeEEChhHHHHH
Confidence 34557778877678999999999999 99999999999999999997421111 2477888876554
No 342
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=95.79 E-value=0.029 Score=43.61 Aligned_cols=65 Identities=20% Similarity=0.195 Sum_probs=52.0
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccC---CCcceecChhchHhh
Q 024046 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSG---GERLYALNPVSKYFV 113 (273)
Q Consensus 45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~---~~~~y~lt~~s~~l~ 113 (273)
.++.++..|...|+.|..+||+.+++ ++..+.++++-|...|++++.... +.-.+.+|+.+..+.
T Consensus 54 ~q~~vL~~l~~~~~~t~~eLa~~l~~----~~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~~G~~~~ 121 (161)
T 3e6m_A 54 PKLRLLSSLSAYGELTVGQLATLGVM----EQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKL 121 (161)
T ss_dssp HHHHHHHHHHHHSEEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEECC---CCCSCEEEECHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeCCcccCCeeEeeECHHHHHHH
Confidence 45568888887689999999999999 999999999999999999974211 113578888887654
No 343
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=95.76 E-value=0.012 Score=45.43 Aligned_cols=65 Identities=6% Similarity=0.058 Sum_probs=51.4
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccC---CCcceecChhchHhh
Q 024046 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSG---GERLYALNPVSKYFV 113 (273)
Q Consensus 45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~---~~~~y~lt~~s~~l~ 113 (273)
.++.++..|...|+.|..+||+.+++ +...+.++++-|...|++++.... +.-.+.+|+.+..+.
T Consensus 44 ~~~~iL~~l~~~~~~t~~ela~~l~i----~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~ 111 (155)
T 3cdh_A 44 PEWRVLACLVDNDAMMITRLAKLSLM----EQSRMTRIVDQMDARGLVTRVADAKDKRRVRVRLTDDGRALA 111 (155)
T ss_dssp HHHHHHHHHSSCSCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEECC------CCCEEECHHHHHHH
T ss_pred HHHHHHHHHHHCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeccCCCcCCeeEeEECHHHHHHH
Confidence 45567888877679999999999999 999999999999999999963211 113478888877654
No 344
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=95.72 E-value=0.02 Score=44.33 Aligned_cols=57 Identities=21% Similarity=0.259 Sum_probs=46.8
Q ss_pred hHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhchHhh
Q 024046 50 FEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFV 113 (273)
Q Consensus 50 fd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~~l~ 113 (273)
...|...|+.|..+||+.+|+ +...+.+.++.|...|+++.. .+..+.+|+.+..+.
T Consensus 46 ~~~l~~~~~~~~~~la~~l~v----s~~tvs~~l~~Le~~Glv~r~---~~~~~~lT~~g~~~~ 102 (155)
T 2h09_A 46 SDLIREVGEARQVDMAARLGV----SQPTVAKMLKRLATMGLIEMI---PWRGVFLTAEGEKLA 102 (155)
T ss_dssp HHHHHHHSCCCHHHHHHHHTS----CHHHHHHHHHHHHHTTCEEEE---TTTEEEECHHHHHHH
T ss_pred HHHHHhCCCcCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEEe---cCCceEEChhHHHHH
Confidence 335555468999999999999 999999999999999999873 345688898876554
No 345
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=95.71 E-value=0.012 Score=44.45 Aligned_cols=46 Identities=17% Similarity=0.184 Sum_probs=37.7
Q ss_pred CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecCh
Q 024046 57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP 107 (273)
Q Consensus 57 g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~ 107 (273)
++.|..+||+.+|+ ++..++++|..|...|+++...+ ..|.|.++.
T Consensus 25 ~~~s~~ela~~~~i----~~~~v~~il~~L~~~Glv~~~~g-~~ggy~L~~ 70 (129)
T 2y75_A 25 GPTSLKSIAQTNNL----SEHYLEQLVSPLRNAGLVKSIRG-AYGGYVLGS 70 (129)
T ss_dssp CCBCHHHHHHHTTS----CHHHHHHHHHHHHHTTSEEEC-----CCEEESS
T ss_pred CcCCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEecCC-CCCceEeCC
Confidence 48999999999999 99999999999999999986421 236687765
No 346
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=95.70 E-value=0.015 Score=44.04 Aligned_cols=65 Identities=15% Similarity=0.162 Sum_probs=50.0
Q ss_pred HHhChhHHH-HhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccC---CCcceecChhchHhh
Q 024046 45 IQLGVFEII-AKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSG---GERLYALNPVSKYFV 113 (273)
Q Consensus 45 ~elglfd~L-~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~---~~~~y~lt~~s~~l~ 113 (273)
.++.++..| ...++.|..+||+.+++ ++..+.++++-|...|+++..... ..-.+.+|+.+..+.
T Consensus 38 ~~~~iL~~l~~~~~~~t~~~la~~l~~----s~~~vs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 106 (146)
T 2fbh_A 38 ARWLVLLHLARHRDSPTQRELAQSVGV----EGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLI 106 (146)
T ss_dssp THHHHHHHHHHCSSCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHhCC----ChhhHHHHHHHHHHCCCeeecCCCcccCeeeeEECHhHHHHH
Confidence 345577888 65579999999999999 999999999999999999974211 112477777776544
No 347
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=95.66 E-value=0.012 Score=44.69 Aligned_cols=66 Identities=12% Similarity=0.168 Sum_probs=52.4
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCC---cceecChhchHhh
Q 024046 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV 113 (273)
Q Consensus 44 a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---~~y~lt~~s~~l~ 113 (273)
..++.++..|...|+.|..+||+.+++ ++..+.++++-|...|+++......+ -.+.+|+.+..+.
T Consensus 33 ~~~~~iL~~l~~~~~~~~~~la~~l~~----s~~tvs~~l~~L~~~glv~r~~~~~d~r~~~~~lT~~G~~~~ 101 (145)
T 2a61_A 33 PAQFDILQKIYFEGPKRPGELSVLLGV----AKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVI 101 (145)
T ss_dssp HHHHHHHHHHHHHCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCC----CchhHHHHHHHHHHCCCeeecCCCCCCceEEEEECHHHHHHH
Confidence 356667888877679999999999999 99999999999999999997421111 2478888877654
No 348
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=95.65 E-value=0.011 Score=41.99 Aligned_cols=61 Identities=13% Similarity=0.074 Sum_probs=47.8
Q ss_pred hhHHHHhCC-CCCHHHHHHHhCcCCCCCcch-HHHHHHHHhcCCceecccc-CCCcceecChhchHhh
Q 024046 49 VFEIIAKAG-ELSAPEIAAQLQAQNVKAPMM-LDRMLRLLVSHRVLECSVS-GGERLYALNPVSKYFV 113 (273)
Q Consensus 49 lfd~L~~~g-~~t~~eLA~~~g~~~~~~~~~-l~rlL~~L~~~gll~~~~~-~~~~~y~lt~~s~~l~ 113 (273)
++..|...| +.|..|||+.+++ ++.. +.++++-|...|++..+.. .....+.+|+.+..+.
T Consensus 20 ~L~~l~~~~~~~t~~eLa~~l~i----s~~t~vs~~l~~Le~~Glv~~~~~drR~~~~~LT~~G~~~~ 83 (95)
T 2pg4_A 20 TLLEFEKKGYEPSLAEIVKASGV----SEKTFFMGLKDRLIRAGLVKEETLSYRVKTLKLTEKGRRLA 83 (95)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHCC----CHHHHHTTHHHHHHHTTSEEEEEEETTEEEEEECHHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHCC----CchHHHHHHHHHHHHCCCeecCCCCCCeEEEEECHhHHHHH
Confidence 455666666 8999999999999 9999 9999999999999984211 1223578899887654
No 349
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=95.64 E-value=0.011 Score=43.84 Aligned_cols=48 Identities=15% Similarity=0.259 Sum_probs=42.9
Q ss_pred HHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecc
Q 024046 43 AAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (273)
Q Consensus 43 ~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~ 95 (273)
...++.|+..|.+ ++.|+.+||+.+|+ ++..+.+.|+.|...|++...
T Consensus 31 ~~~~~~il~~L~~-~~~s~~ela~~l~i----s~stvsr~l~~Le~~Glv~~~ 78 (119)
T 2lkp_A 31 TPSRLMILTQLRN-GPLPVTDLAEAIGM----EQSAVSHQLRVLRNLGLVVGD 78 (119)
T ss_dssp CHHHHHHHHHHHH-CCCCHHHHHHHHSS----CHHHHHHHHHHHHHHCSEEEE
T ss_pred CHHHHHHHHHHHH-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 3467778888887 79999999999999 999999999999999999863
No 350
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=95.61 E-value=0.015 Score=44.60 Aligned_cols=65 Identities=20% Similarity=0.277 Sum_probs=51.7
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccC---CCcceecChhchHhh
Q 024046 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSG---GERLYALNPVSKYFV 113 (273)
Q Consensus 45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~---~~~~y~lt~~s~~l~ 113 (273)
.++.++..|...++.|..+||+.+++ ++..+.++++-|...|++++.... ..-.+.+|+.+..+.
T Consensus 41 ~~~~iL~~l~~~~~~t~~ela~~l~~----~~~~vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~ 108 (152)
T 3bj6_A 41 GQRAILEGLSLTPGATAPQLGAALQM----KRQYISRILQEVQRAGLIERRTNPEHARSHRYWLTPRGEAII 108 (152)
T ss_dssp HHHHHHHHHHHSTTEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEECCSSSTTSCEEEECHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeecCCcccccceeeEEChhhHHHH
Confidence 45667888887779999999999999 999999999999999999974211 112577888776554
No 351
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=95.60 E-value=0.0079 Score=51.14 Aligned_cols=59 Identities=15% Similarity=0.119 Sum_probs=49.3
Q ss_pred hChhHHHHhC-CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhchHhh
Q 024046 47 LGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFV 113 (273)
Q Consensus 47 lglfd~L~~~-g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~~l~ 113 (273)
+.|+++|... ++.|+.|||+.+|+ +...+.|+|..|...|+++.+ ++.|++++....+.
T Consensus 17 l~iL~~l~~~~~~~~~~eia~~~gl----~~stv~r~l~~L~~~G~v~~~----~~~Y~Lg~~~~~l~ 76 (257)
T 2g7u_A 17 FAVLLAFDAQRPNPTLAELATEAGL----SRPAVRRILLTLQKLGYVAGS----GGRWSLTPRVLSIG 76 (257)
T ss_dssp HHHHHTCSSSCSSCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE----TTEEEECGGGHHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeC----CCEEEEcHHHHHHH
Confidence 4567777653 48999999999999 999999999999999999973 48899998765443
No 352
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=95.59 E-value=0.0068 Score=46.13 Aligned_cols=65 Identities=12% Similarity=0.069 Sum_probs=51.0
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccC---CCcceecChhchHhh
Q 024046 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSG---GERLYALNPVSKYFV 113 (273)
Q Consensus 45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~---~~~~y~lt~~s~~l~ 113 (273)
.+..++..|...++.|..+||+.+++ ++..+.++++-|...|++++.... +.-.+.+|+.++.+.
T Consensus 37 ~q~~vL~~l~~~~~~t~~eLa~~l~~----~~~tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 104 (140)
T 3hsr_A 37 TGYIVLMAIENDEKLNIKKLGERVFL----DSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIK 104 (140)
T ss_dssp HHHHHHHHSCTTCEEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHTH
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCeEecCCCCCcceeeeeEChHHHHHH
Confidence 45557777776679999999999999 999999999999999999974211 123578888887654
No 353
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=95.59 E-value=0.016 Score=41.49 Aligned_cols=62 Identities=15% Similarity=0.245 Sum_probs=51.9
Q ss_pred HHhChhHHHHhCCCCCHHHHHH-HhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhchHhhc
Q 024046 45 IQLGVFEIIAKAGELSAPEIAA-QLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVS 114 (273)
Q Consensus 45 ~elglfd~L~~~g~~t~~eLA~-~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~~l~~ 114 (273)
.++.|+-.|...++.|+.+||+ ..++ +...+.|-++.|...|+++. .+++ +.+|+.++.++.
T Consensus 17 ~QfsiL~~L~~~~~~t~~~Lae~~l~~----drstvsrnl~~L~r~GlVe~---~~~D-l~LT~~G~~~l~ 79 (95)
T 1bja_A 17 KTATILITIAKKDFITAAEVREVHPDL----GNAVVNSNIGVLIKKGLVEK---SGDG-LIITGEAQDIIS 79 (95)
T ss_dssp HHHHHHHHHHHSTTBCHHHHHHTCTTS----CHHHHHHHHHHHHTTTSEEE---ETTE-EEECHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHhcc----cHHHHHHHHHHHHHCCCeec---CCCC-eeeCHhHHHHHH
Confidence 3456777888878999999999 9999 99999999999999999983 2444 889999876653
No 354
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=95.58 E-value=0.016 Score=44.70 Aligned_cols=66 Identities=17% Similarity=0.109 Sum_probs=52.5
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccC---CCcceecChhchHhh
Q 024046 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSG---GERLYALNPVSKYFV 113 (273)
Q Consensus 44 a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~---~~~~y~lt~~s~~l~ 113 (273)
..++.++..|...++.|..+||+.+++ +...+.++++.|...|++++.... ..-.+.+|+.+..+.
T Consensus 44 ~~~~~iL~~l~~~~~~t~~ela~~l~i----s~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~ 112 (154)
T 2eth_A 44 TTELYAFLYVALFGPKKMKEIAEFLST----TKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIF 112 (154)
T ss_dssp HHHHHHHHHHHHHCCBCHHHHHHHTTS----CHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeCCCCCcceeEEEECHHHHHHH
Confidence 456678888877679999999999999 999999999999999999874211 112477888876654
No 355
>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35
Probab=95.57 E-value=0.015 Score=52.02 Aligned_cols=74 Identities=16% Similarity=0.202 Sum_probs=52.2
Q ss_pred CCcceEEEecCCccHHHHHHHHH----------------CCCCeEEEeechH-----HHHhCCC----CCC--ceEEEcc
Q 024046 196 QNVERLVDVGGGFGVTLSMITSK----------------YPQIKAVNFDLPH-----VVQDAPS----YAG--VEHVGGN 248 (273)
Q Consensus 196 ~~~~~vvDVGGG~G~~~~~l~~~----------------~P~l~~~~~Dlp~-----v~~~a~~----~~r--i~~~~gD 248 (273)
++.-+|+|+||++|..+..+... .|++.++.-|||. +-..... .+. +.-++|.
T Consensus 50 ~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgS 129 (359)
T 1m6e_X 50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGS 129 (359)
T ss_dssp SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESC
T ss_pred CCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchh
Confidence 45678999999999755543332 6888889999976 2222211 111 4678899
Q ss_pred cCC-CCCCC--CEEEecccccccC
Q 024046 249 MFE-SVPEG--DAILMKVGNFENY 269 (273)
Q Consensus 249 ~f~-~~p~~--D~~~l~~vLHd~~ 269 (273)
|+. .+|.. |+++-+..||=-+
T Consensus 130 Fy~rlfp~~S~d~v~Ss~aLHWls 153 (359)
T 1m6e_X 130 FYGRLFPRNTLHFIHSSYSLMWLS 153 (359)
T ss_dssp SSSCCSCTTCBSCEEEESCTTBCS
T ss_pred hhhccCCCCceEEEEehhhhhhcc
Confidence 998 68875 9999999999544
No 356
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=95.57 E-value=0.01 Score=44.91 Aligned_cols=66 Identities=15% Similarity=0.129 Sum_probs=52.1
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCC---cceecChhchHhh
Q 024046 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV 113 (273)
Q Consensus 44 a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---~~y~lt~~s~~l~ 113 (273)
..++.++..|...++.|..+||+.+++ ++..+.++++-|...|+++......+ -.+.+|+.+..+.
T Consensus 36 ~~~~~iL~~l~~~~~~t~~ela~~l~~----s~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 104 (142)
T 2fbi_A 36 EQQWRVIRILRQQGEMESYQLANQACI----LRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCF 104 (142)
T ss_dssp HHHHHHHHHHHHHCSEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEeecCCCCCCeeEEEECHHHHHHH
Confidence 356668888877679999999999999 99999999999999999987421111 2477888776654
No 357
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=95.52 E-value=0.014 Score=44.06 Aligned_cols=65 Identities=18% Similarity=0.155 Sum_probs=51.7
Q ss_pred HHhChhHHHHhCC--CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCC---CcceecChhchHhh
Q 024046 45 IQLGVFEIIAKAG--ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGG---ERLYALNPVSKYFV 113 (273)
Q Consensus 45 ~elglfd~L~~~g--~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~---~~~y~lt~~s~~l~ 113 (273)
.+..++..|...+ +.|..+||+.+++ ++..+.++++-|...|++++..... .-.+.+|+.+..+.
T Consensus 32 ~~~~vL~~l~~~~~~~~t~~ela~~l~~----~~~tvs~~l~~Le~~Gli~r~~~~~D~R~~~~~LT~~G~~~~ 101 (139)
T 3eco_A 32 EQGHTLGYLYAHQQDGLTQNDIAKALQR----TGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLV 101 (139)
T ss_dssp HHHHHHHHHHHSTTTCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECCC--CCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCcCHHHHHHHhCC----CcccHHHHHHHHHHCCCEeecCCCCCCCeeeeEECHHHHHHH
Confidence 4566778887765 8999999999999 9999999999999999999742111 12577888877654
No 358
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=95.50 E-value=0.015 Score=45.15 Aligned_cols=66 Identities=14% Similarity=0.153 Sum_probs=52.6
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecccc---CCCcceecChhchHhh
Q 024046 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVS---GGERLYALNPVSKYFV 113 (273)
Q Consensus 44 a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~---~~~~~y~lt~~s~~l~ 113 (273)
..++.|+..|...++.|..+||+.+++ +...+.++++-|...|+++.... ...-.+.+|+.+..+.
T Consensus 52 ~~~~~iL~~l~~~~~~t~~ela~~l~i----s~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~ 120 (162)
T 3cjn_A 52 TAKMRALAILSAKDGLPIGTLGIFAVV----EQSTLSRALDGLQADGLVRREVDSDDQRSSRVYLTPAGRAVY 120 (162)
T ss_dssp HHHHHHHHHHHHSCSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEC--CCSSEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 356668888887779999999999999 99999999999999999987421 1113477888776554
No 359
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=95.49 E-value=0.02 Score=43.48 Aligned_cols=50 Identities=12% Similarity=0.027 Sum_probs=43.4
Q ss_pred CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhchHhh
Q 024046 56 AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFV 113 (273)
Q Consensus 56 ~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~~l~ 113 (273)
.++.|+.+||+.+|+ +...+.+.++.|...|+++.. . ..|.+|+.+..+.
T Consensus 29 ~~~~s~~ela~~l~i----s~~tv~~~l~~Le~~Gli~r~---~-~~~~Lt~~g~~~~ 78 (139)
T 2x4h_A 29 GEGAKINRIAKDLKI----APSSVFEEVSHLEEKGLVKKK---E-DGVWITNNGTRSI 78 (139)
T ss_dssp TSCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE---T-TEEEECHHHHHHH
T ss_pred CCCcCHHHHHHHhCC----ChHHHHHHHHHHHHCCCEEec---C-CeEEEChhHHHHH
Confidence 358999999999999 999999999999999999973 3 6788999876543
No 360
>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*
Probab=95.48 E-value=0.022 Score=47.72 Aligned_cols=78 Identities=17% Similarity=0.205 Sum_probs=54.2
Q ss_pred hhHHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHh----CCC--CCCceEEEc-ccCCCCCC
Q 024046 183 IAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQD----APS--YAGVEHVGG-NMFESVPE 255 (273)
Q Consensus 183 ~~~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~----a~~--~~ri~~~~g-D~f~~~p~ 255 (273)
+....+.+.+- +....+|||+||+.|.++--.+....-.+++.+|+-..--. .+. -+-|+|..+ |+|.--|.
T Consensus 65 ~KL~ei~ek~~-l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~~~ 143 (267)
T 3p8z_A 65 AKLQWFVERNM-VIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLPPE 143 (267)
T ss_dssp HHHHHHHHTTS-SCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCCCC
T ss_pred HHHHHHHHhcC-CCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeecCCc
Confidence 33456666664 77777999999999999997777776667899998221111 011 177999999 98762222
Q ss_pred -CCEEEe
Q 024046 256 -GDAILM 261 (273)
Q Consensus 256 -~D~~~l 261 (273)
.|++++
T Consensus 144 ~~Dtllc 150 (267)
T 3p8z_A 144 KCDTLLC 150 (267)
T ss_dssp CCSEEEE
T ss_pred cccEEEE
Confidence 588776
No 361
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=95.48 E-value=0.014 Score=45.40 Aligned_cols=64 Identities=11% Similarity=0.058 Sum_probs=50.7
Q ss_pred HhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCC---cceecChhchHhh
Q 024046 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV 113 (273)
Q Consensus 46 elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---~~y~lt~~s~~l~ 113 (273)
+..++..|...++.|..+||+.+++ ++..+.++++-|...|++++.....+ -.+.+|+.+..+.
T Consensus 52 q~~vL~~l~~~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~ 118 (159)
T 3s2w_A 52 QFPFLMRLYREDGINQESLSDYLKI----DKGTTARAIQKLVDEGYVFRQRDEKDRRSYRVFLTEKGKKLE 118 (159)
T ss_dssp THHHHHHHHHSCSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECC---CCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEecCCCCCCeeEEEECHHHHHHH
Confidence 4457778877789999999999999 99999999999999999997421111 2577888877654
No 362
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=95.45 E-value=0.015 Score=44.14 Aligned_cols=66 Identities=12% Similarity=0.117 Sum_probs=52.4
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCC---cceecChhchHhh
Q 024046 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV 113 (273)
Q Consensus 44 a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---~~y~lt~~s~~l~ 113 (273)
..++.++..|...++.|..+||+.+++ ++..+.+.++.|...|+++......+ -.+.+|+.+..+.
T Consensus 37 ~~~~~iL~~l~~~~~~~~~ela~~l~~----~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~ 105 (142)
T 2bv6_A 37 YPQFLVLTILWDESPVNVKKVVTELAL----DTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIR 105 (142)
T ss_dssp HHHHHHHHHHHHSSEEEHHHHHHHTTC----CTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEeecCCCCcceEEEEEChHHHHHH
Confidence 356668888887779999999999999 99999999999999999987421111 2577888876554
No 363
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=95.44 E-value=0.0087 Score=51.00 Aligned_cols=57 Identities=16% Similarity=0.268 Sum_probs=46.9
Q ss_pred hChhHHHHh-CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhch
Q 024046 47 LGVFEIIAK-AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (273)
Q Consensus 47 lglfd~L~~-~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~ 110 (273)
+.|+++|.. .++.|+.|||+.+|+ +...+.|+|+.|...|+++.+ ..+.|++++..-
T Consensus 26 l~iL~~l~~~~~~~~~~eia~~~gl----~kstv~r~l~tL~~~G~v~~~---~~~~Y~lg~~~~ 83 (260)
T 2o0y_A 26 IDLLELFDAAHPTRSLKELVEGTKL----PKTTVVRLVATMCARSVLTSR---ADGSYSLGPEML 83 (260)
T ss_dssp HHHHTTCBTTBSSBCHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEEC---TTSCEEECHHHH
T ss_pred HHHHHHHhhCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEC---CCCeEEecHHHH
Confidence 345667753 358999999999999 999999999999999999984 334899998643
No 364
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=95.43 E-value=0.023 Score=43.16 Aligned_cols=65 Identities=18% Similarity=0.333 Sum_probs=49.4
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecccc---CCCcceecChhchHhh
Q 024046 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVS---GGERLYALNPVSKYFV 113 (273)
Q Consensus 44 a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~---~~~~~y~lt~~s~~l~ 113 (273)
..+..|+..|...+ .|..+||+.+|+ ++..+.++++-|...|+++.... .+.-.+.+|+.+..+.
T Consensus 38 ~~~~~iL~~l~~~~-~t~~eLa~~l~~----s~~tvs~~l~~L~~~Glv~r~~~~~d~R~~~~~lT~~g~~~~ 105 (146)
T 3tgn_A 38 NTQEHILMLLSEES-LTNSELARRLNV----SQAAVTKAIKSLVKEGMLETSKDSKDARVIFYQLTDLARPIA 105 (146)
T ss_dssp HHHHHHHHHHTTCC-CCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC----------CCEECGGGHHHH
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEeccCCCCCceeEEEECHhHHHHH
Confidence 45667888888765 999999999999 99999999999999999997321 1113577787776544
No 365
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=95.42 E-value=0.017 Score=44.47 Aligned_cols=66 Identities=20% Similarity=0.207 Sum_probs=52.4
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccC---CCcceecChhchHhhc
Q 024046 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSG---GERLYALNPVSKYFVS 114 (273)
Q Consensus 45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~---~~~~y~lt~~s~~l~~ 114 (273)
.++.++..|...++.|..+||+.+++ +...+.++++-|...|+++..... +.-.+.+|+.+..+..
T Consensus 48 ~~~~iL~~l~~~~~~t~~ela~~l~~----s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~ 116 (153)
T 2pex_A 48 PQYLVMLVLWETDERSVSEIGERLYL----DSATLTPLLKRLQAAGLVTRTRAASDERQVIIALTETGRALRS 116 (153)
T ss_dssp HHHHHHHHHHHSCSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHGGG
T ss_pred HHHHHHHHHHhCCCcCHHHHHHHhCC----CcccHHHHHHHHHHCCCEeecCCcccCCeeEeeECHHHHHHHH
Confidence 45667888887779999999999999 999999999999999999974211 1125888998876653
No 366
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=95.39 E-value=0.013 Score=52.57 Aligned_cols=54 Identities=15% Similarity=0.183 Sum_probs=45.5
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC--------------CCceEEEcccCC
Q 024046 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------------AGVEHVGGNMFE 251 (273)
Q Consensus 197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~--------------~ri~~~~gD~f~ 251 (273)
++++||=||||.|..+.++++. |.-+++++|+ |.|++.++++ +|++++.+|.+.
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh-~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~ 273 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKL-KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIP 273 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTT-CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHH
T ss_pred CCCeEEEECCCcHHHHHHHHhc-CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHH
Confidence 4689999999999999999985 5578999999 8898876531 579999999875
No 367
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=95.29 E-value=0.016 Score=41.50 Aligned_cols=48 Identities=15% Similarity=0.365 Sum_probs=42.1
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecc
Q 024046 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (273)
Q Consensus 44 a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~ 95 (273)
..+..|+..|...++.|+.+||+.+|+ ++..+.+.|+.|...|++...
T Consensus 20 ~~~~~il~~l~~~~~~s~~ela~~l~i----s~~tv~~~l~~L~~~glv~~~ 67 (109)
T 1sfx_A 20 PSDVRIYSLLLERGGMRVSEIARELDL----SARFVRDRLKVLLKRGFVRRE 67 (109)
T ss_dssp HHHHHHHHHHHHHCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEE
Confidence 345667778876679999999999999 999999999999999999873
No 368
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=95.27 E-value=0.0079 Score=51.41 Aligned_cols=55 Identities=16% Similarity=0.182 Sum_probs=46.9
Q ss_pred hChhHHHHhC-CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhc
Q 024046 47 LGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVS 109 (273)
Q Consensus 47 lglfd~L~~~-g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s 109 (273)
+.|+++|... ++.|+.|||+.+|+ +...+.|+|+.|...|+++. .++.|++++..
T Consensus 24 l~iL~~l~~~~~~~~~~eia~~~gl----~~stv~r~l~tL~~~G~v~~----~~~~Y~Lg~~~ 79 (265)
T 2ia2_A 24 LAVIRCFDHRNQRRTLSDVARATDL----TRATARRFLLTLVELGYVAT----DGSAFWLTPRV 79 (265)
T ss_dssp HHHHHTCCSSCSSEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEE----SSSEEEECGGG
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEe----cCCEEEEcHHH
Confidence 4567777643 48999999999999 99999999999999999997 35889998864
No 369
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=95.22 E-value=0.047 Score=48.63 Aligned_cols=54 Identities=9% Similarity=0.148 Sum_probs=41.6
Q ss_pred cceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCC---CCCCceEEEcccCC
Q 024046 198 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAP---SYAGVEHVGGNMFE 251 (273)
Q Consensus 198 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~---~~~ri~~~~gD~f~ 251 (273)
...|||||.|.|.++..|+++..--+.++++. +..++..+ ..++++++.+|+++
T Consensus 59 ~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~~~~l~ii~~D~l~ 116 (353)
T 1i4w_A 59 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD 116 (353)
T ss_dssp TCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred CCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhccCCCEEEEECCccc
Confidence 47899999999999999999753346888887 44333222 35899999999975
No 370
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=95.22 E-value=0.026 Score=42.49 Aligned_cols=65 Identities=12% Similarity=0.248 Sum_probs=50.1
Q ss_pred HHhChhHHHHhCC--CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCC---cceecChhchHhh
Q 024046 45 IQLGVFEIIAKAG--ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV 113 (273)
Q Consensus 45 ~elglfd~L~~~g--~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---~~y~lt~~s~~l~ 113 (273)
.+..++..|...+ +.|..+||+.+++ ++..+.++++-|...|+++......+ -.+.+|+.+..+.
T Consensus 35 ~~~~iL~~l~~~~~~~~~~~ela~~l~~----~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~i~lT~~G~~~~ 104 (141)
T 3bro_A 35 TQMTIIDYLSRNKNKEVLQRDLESEFSI----KSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLE 104 (141)
T ss_dssp HHHHHHHHHHHTTTSCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTTH
T ss_pred HHHHHHHHHHHCCCCCcCHHHHHHHHCC----CcchHHHHHHHHHHCCCEEeeCCCcCCCeeeeEECHHHHHHH
Confidence 4555777887766 7999999999999 99999999999999999987421111 2567787775443
No 371
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=95.17 E-value=0.012 Score=44.88 Aligned_cols=67 Identities=15% Similarity=0.109 Sum_probs=52.6
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccC---CCcceecChhchHhhc
Q 024046 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSG---GERLYALNPVSKYFVS 114 (273)
Q Consensus 44 a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~---~~~~y~lt~~s~~l~~ 114 (273)
..++.++..|...++.|..+||+.+++ ++..+.++++.|...|+++..... +.-.+.+|+.+..+..
T Consensus 40 ~~~~~iL~~l~~~~~~~~~~la~~l~~----~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~LT~~G~~~~~ 109 (147)
T 1z91_A 40 YPQYLALLLLWEHETLTVKKMGEQLYL----DSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKE 109 (147)
T ss_dssp HHHHHHHHHHHHHSEEEHHHHHHTTTC----CHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHSGGG
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCC----CcCcHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHH
Confidence 345667788877679999999999999 999999999999999999974211 1124788888876553
No 372
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=95.15 E-value=0.03 Score=44.06 Aligned_cols=63 Identities=16% Similarity=0.172 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecCh
Q 024046 37 LPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP 107 (273)
Q Consensus 37 ~~~aL~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~ 107 (273)
...||++.+.+..- ...++.|.++||+.+++ ++..++++|..|...|++....+ ..|.|.++.
T Consensus 26 ~~yAlr~L~~LA~~---~~~~~~s~~eIA~~~~i----~~~~l~kil~~L~~aGlv~s~rG-~~GGy~Lar 88 (159)
T 3lwf_A 26 GRYGLTITLELAKR---IGDGPISLRSIAQDKNL----SEHYLEQLIGPLRNAGIVKSIRG-AHGGYVLNG 88 (159)
T ss_dssp HHHHHHHHHHHHHT---TTSCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEECS-TTCEEEECS
T ss_pred HHHHHHHHHHHHhc---CCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCeEEEecC-CCCceEecC
Confidence 34455555444321 22248999999999999 99999999999999999997542 446687764
No 373
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=95.13 E-value=0.023 Score=44.61 Aligned_cols=66 Identities=12% Similarity=0.129 Sum_probs=51.0
Q ss_pred HHHhChhHHHHh-CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCC---cceecChhchHhh
Q 024046 44 AIQLGVFEIIAK-AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV 113 (273)
Q Consensus 44 a~elglfd~L~~-~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---~~y~lt~~s~~l~ 113 (273)
..++.++..|.. .++.|..+||+.+++ +...+.++++-|...|+|++.....+ -.+.+|+.++.++
T Consensus 53 ~~q~~vL~~L~~~~~~~t~~eLa~~l~i----~~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~ 122 (166)
T 3deu_A 53 QTHWVTLHNIHQLPPDQSQIQLAKAIGI----EQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLI 122 (166)
T ss_dssp HHHHHHHHHHHHSCSSEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHCC----CHhhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEECHHHHHHH
Confidence 345667888876 458999999999999 99999999999999999997421111 3577888877654
No 374
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Probab=95.11 E-value=0.02 Score=54.09 Aligned_cols=74 Identities=16% Similarity=0.083 Sum_probs=52.4
Q ss_pred HHhhcccCCCcceEEEecCCccHHHHHHHHHCC------------------CCeEEEeec-hHHHHhCCC------CCC-
Q 024046 188 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP------------------QIKAVNFDL-PHVVQDAPS------YAG- 241 (273)
Q Consensus 188 il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P------------------~l~~~~~Dl-p~v~~~a~~------~~r- 241 (273)
+++... .....+|+|.+||+|.++..+.+... ..+++++|+ |.++..|+. .+.
T Consensus 161 mv~~l~-p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~ 239 (541)
T 2ar0_A 161 IIHLLK-PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGN 239 (541)
T ss_dssp HHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCB
T ss_pred HHHHhc-cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCcc
Confidence 444444 34567999999999999998887632 246899998 777776643 132
Q ss_pred ----ceEEEcccCC-C-CC--CCCEEEec
Q 024046 242 ----VEHVGGNMFE-S-VP--EGDAILMK 262 (273)
Q Consensus 242 ----i~~~~gD~f~-~-~p--~~D~~~l~ 262 (273)
+.+..+|.+. + .+ ..|+|+..
T Consensus 240 ~~~~~~I~~gDtL~~~~~~~~~fD~Vv~N 268 (541)
T 2ar0_A 240 LDHGGAIRLGNTLGSDGENLPKAHIVATN 268 (541)
T ss_dssp GGGTBSEEESCTTSHHHHTSCCEEEEEEC
T ss_pred ccccCCeEeCCCcccccccccCCeEEEEC
Confidence 7899999997 2 22 23988864
No 375
>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}
Probab=95.08 E-value=0.0099 Score=56.18 Aligned_cols=75 Identities=19% Similarity=0.136 Sum_probs=51.5
Q ss_pred HHHHhhcccCCCcceEEEecCCccHHHHHHHHHCC---------------CCeEEEeec-hHHHHhCCCC-------CCc
Q 024046 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP---------------QIKAVNFDL-PHVVQDAPSY-------AGV 242 (273)
Q Consensus 186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P---------------~l~~~~~Dl-p~v~~~a~~~-------~ri 242 (273)
..+++... . ...+|+|.+||+|.++..+.+..+ ..++.++|+ |.++..|+.+ .+|
T Consensus 235 ~lmv~ll~-p-~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i 312 (544)
T 3khk_A 235 TLIVEMLE-P-YKGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNF 312 (544)
T ss_dssp HHHHHHHC-C-CSEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBC
T ss_pred HHHHHHHh-c-CCCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCccc
Confidence 33444443 2 234999999999999998876543 567899998 7777766531 345
Q ss_pred eEEEcccCC-C-CCC-C-CEEEec
Q 024046 243 EHVGGNMFE-S-VPE-G-DAILMK 262 (273)
Q Consensus 243 ~~~~gD~f~-~-~p~-~-D~~~l~ 262 (273)
.+..||.+. + .+. . |+|+..
T Consensus 313 ~i~~gDtL~~~~~~~~~fD~Iv~N 336 (544)
T 3khk_A 313 GKKNADSFLDDQHPDLRADFVMTN 336 (544)
T ss_dssp CSSSCCTTTSCSCTTCCEEEEEEC
T ss_pred ceeccchhcCcccccccccEEEEC
Confidence 568899987 3 333 2 888873
No 376
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=95.07 E-value=0.024 Score=46.47 Aligned_cols=68 Identities=13% Similarity=0.173 Sum_probs=53.5
Q ss_pred HHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccC-----CCcceecChhch
Q 024046 38 PMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSG-----GERLYALNPVSK 110 (273)
Q Consensus 38 ~~aL~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~-----~~~~y~lt~~s~ 110 (273)
..+|....++.|+..|.. ||.|+.+||+.+|+ ++..+.+.|+.|...|++...... ..-.|++|+...
T Consensus 9 lkaL~~~~rl~IL~~L~~-~~~s~~eLa~~l~i----s~stvs~hLk~Le~~GLV~~~~~~~~~g~~~~~Y~Lt~~~~ 81 (202)
T 2p4w_A 9 LDVLGNETRRRILFLLTK-RPYFVSELSRELGV----GQKAVLEHLRILEEAGLIESRVEKIPRGRPRKYYMIKKGLR 81 (202)
T ss_dssp HHHHHSHHHHHHHHHHHH-SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEECTTEE
T ss_pred HHHhCCHHHHHHHHHHHh-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEEeeccCCCCceEEEEEChHHH
Confidence 455666678888888876 79999999999999 999999999999999999874210 112577777553
No 377
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=95.04 E-value=0.017 Score=44.18 Aligned_cols=65 Identities=14% Similarity=0.110 Sum_probs=44.1
Q ss_pred HHhChhHHHHhC--CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccC---CCcceecChhchHhh
Q 024046 45 IQLGVFEIIAKA--GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSG---GERLYALNPVSKYFV 113 (273)
Q Consensus 45 ~elglfd~L~~~--g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~---~~~~y~lt~~s~~l~ 113 (273)
.+..++..|... ++.|..+||+.+++ ++..+.++++-|...|++++.... +.-.+.+|+.++.+.
T Consensus 42 ~q~~vL~~l~~~~~~~~t~~eLa~~l~~----~~~~vs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~ 111 (148)
T 3jw4_A 42 QQGRMIGYIYENQESGIIQKDLAQFFGR----RGASITSMLQGLEKKGYIERRIPENNARQKNIYVLPKGAALV 111 (148)
T ss_dssp HHHHHHHHHHHHTTTCCCHHHHHHC----------CHHHHHHHHHHTTSBCCC--------CCCCBCHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEeeCCCCCchhheeeECHHHHHHH
Confidence 455677788776 69999999999999 999999999999999999874211 112567788776554
No 378
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=94.99 E-value=0.044 Score=39.30 Aligned_cols=53 Identities=25% Similarity=0.265 Sum_probs=43.1
Q ss_pred CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecccc-CCCcceecChhchHhh
Q 024046 57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVS-GGERLYALNPVSKYFV 113 (273)
Q Consensus 57 g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~-~~~~~y~lt~~s~~l~ 113 (273)
++.+..+||+.+++ +...|.|.|.-|...|+++.... .+.+...+|+.++.++
T Consensus 35 ~~~s~~eLa~~l~l----~~stLsR~l~rLe~~GLV~r~~~~D~R~~v~LT~~G~~~l 88 (96)
T 2obp_A 35 TPWSLPKIAKRAQL----PMSVLRRVLTQLQAAGLADVSVEADGRGHASLTQEGAALA 88 (96)
T ss_dssp CCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECTTSCEEEEECHHHHHHH
T ss_pred CCcCHHHHHHHhCC----chhhHHHHHHHHHHCCCEEeecCCCCceeEEECHHHHHHH
Confidence 58899999999999 99999999999999999997432 1224568888876554
No 379
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=94.98 E-value=0.017 Score=43.30 Aligned_cols=65 Identities=12% Similarity=0.159 Sum_probs=51.1
Q ss_pred HHhChhHHHHhC--CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccC---CCcceecChhchHhh
Q 024046 45 IQLGVFEIIAKA--GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSG---GERLYALNPVSKYFV 113 (273)
Q Consensus 45 ~elglfd~L~~~--g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~---~~~~y~lt~~s~~l~ 113 (273)
.+..++..|... ++.|..+||+.+++ ++..+.++++-|...|++++.... +.-.+.+|+.+..+.
T Consensus 38 ~q~~vL~~l~~~~~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~i~LT~~G~~~~ 107 (127)
T 2frh_A 38 EEFAVLTYISENKEKEYYLKDIINHLNY----KQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKI 107 (127)
T ss_dssp HHHHHHHHHHHTCCSEEEHHHHHHHSSS----HHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHH
T ss_pred HHHHHHHHHHhccCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 455577778776 68999999999999 999999999999999999873211 123577888877654
No 380
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=94.94 E-value=0.038 Score=42.66 Aligned_cols=65 Identities=9% Similarity=0.114 Sum_probs=49.7
Q ss_pred HHhChhHHH-HhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCC---cceecChhchHhh
Q 024046 45 IQLGVFEII-AKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV 113 (273)
Q Consensus 45 ~elglfd~L-~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---~~y~lt~~s~~l~ 113 (273)
.++.++..| ...++.|..+||+.+++ ++..+.++++-|...|++++.....+ -.+.+|+.+..+.
T Consensus 48 ~~~~iL~~L~~~~~~~~~~ela~~l~i----~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~ 116 (160)
T 3boq_A 48 AKFDAMAQLARNPDGLSMGKLSGALKV----TNGNVSGLVNRLIKDGMVVKAMSADDRRSFSAKLTDAGLTTF 116 (160)
T ss_dssp HHHHHHHHHHHCTTCEEHHHHHHHCSS----CCSCHHHHHHHHHHHTSEEEC--------CEEEECHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEeecCCCCCCeEEEEEChhHHHHH
Confidence 456688888 44469999999999999 99999999999999999997321111 2477888776554
No 381
>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}
Probab=94.91 E-value=0.02 Score=53.99 Aligned_cols=66 Identities=17% Similarity=0.066 Sum_probs=51.3
Q ss_pred CcceEEEecCCccHHHHHHHHHC---CCCeEEEeec-hHHHHhCCCC--------CCceEEEcccCC-CCC---C--CCE
Q 024046 197 NVERLVDVGGGFGVTLSMITSKY---PQIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFE-SVP---E--GDA 258 (273)
Q Consensus 197 ~~~~vvDVGGG~G~~~~~l~~~~---P~l~~~~~Dl-p~v~~~a~~~--------~ri~~~~gD~f~-~~p---~--~D~ 258 (273)
...+|+|.+||+|.++..+.+.. +..++.++|+ |.++..|+.+ +++.+..+|.+. ++| . .|+
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~ 300 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDG 300 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSE
T ss_pred CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccccE
Confidence 45799999999999999999885 4678999998 7777766531 467899999997 344 2 298
Q ss_pred EEec
Q 024046 259 ILMK 262 (273)
Q Consensus 259 ~~l~ 262 (273)
|+..
T Consensus 301 IvaN 304 (542)
T 3lkd_A 301 VLMN 304 (542)
T ss_dssp EEEC
T ss_pred EEec
Confidence 8864
No 382
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=94.90 E-value=0.027 Score=43.09 Aligned_cols=66 Identities=11% Similarity=0.168 Sum_probs=49.0
Q ss_pred HHHhChhHHHHhCC-CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCC---cceecChhchHhh
Q 024046 44 AIQLGVFEIIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV 113 (273)
Q Consensus 44 a~elglfd~L~~~g-~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---~~y~lt~~s~~l~ 113 (273)
..+..++..|...+ +.|..+||+.+++ ++..+.++++-|...|++++.....+ -.+.+|+.+..+.
T Consensus 39 ~~q~~vL~~l~~~~~~~t~~eLa~~l~i----~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 108 (150)
T 3fm5_A 39 VRSYSVLVLACEQAEGVNQRGVAATMGL----DPSQIVGLVDELEERGLVVRTLDPSDRRNKLIAATEEGRRLR 108 (150)
T ss_dssp HHHHHHHHHHHHSTTCCCSHHHHHHHTC----CHHHHHHHHHHHHTTTSEEC-----------CEECHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEeeCCccccchheeeECHHHHHHH
Confidence 35666777886544 7899999999999 99999999999999999997321111 2377888877654
No 383
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=94.87 E-value=0.059 Score=42.11 Aligned_cols=66 Identities=15% Similarity=0.175 Sum_probs=49.3
Q ss_pred HHHhChhHHHHhC--CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCc---ceecChhchHhh
Q 024046 44 AIQLGVFEIIAKA--GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (273)
Q Consensus 44 a~elglfd~L~~~--g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~---~y~lt~~s~~l~ 113 (273)
..++.++..|... ++.|..+||+.+++ ++..+.++++-|...|+|++.....+. .+.+|+.+..++
T Consensus 46 ~~q~~vL~~l~~~~~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~ 116 (168)
T 3u2r_A 46 AQQYNTLRLLRSVHPEGMATLQIADRLIS----RAPDITRLIDRLDDRGLVLRTRKPENRRVVEVALTDAGLKLL 116 (168)
T ss_dssp HHHHHHHHHHHHHTTSCEEHHHHHHHC-------CTHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEeecCCCCCCCeeEeEECHHHHHHH
Confidence 3566678888774 49999999999999 999999999999999999974211122 578888887655
No 384
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=94.83 E-value=0.019 Score=39.54 Aligned_cols=51 Identities=22% Similarity=0.348 Sum_probs=41.4
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecc
Q 024046 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (273)
Q Consensus 45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~ 95 (273)
.+..|++.|...++.|+.||++.++..++.++..+.++|+.|...|++.+.
T Consensus 10 ~e~~vL~~L~~~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~ 60 (82)
T 1p6r_A 10 AELEVMKVIWKHSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHH 60 (82)
T ss_dssp HHHHHHHHHHTSSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEE
Confidence 456677888776799999999999731112788999999999999999974
No 385
>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*
Probab=94.80 E-value=0.014 Score=49.62 Aligned_cols=76 Identities=17% Similarity=0.173 Sum_probs=46.9
Q ss_pred hhHHHHHhhcccCCCcceEEEecCCccHHHHHHHHH--CCCCeE--EEeechHHHHhCCCC-CCc---eEEEc-ccCCCC
Q 024046 183 IAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSK--YPQIKA--VNFDLPHVVQDAPSY-AGV---EHVGG-NMFESV 253 (273)
Q Consensus 183 ~~~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~--~P~l~~--~~~Dlp~v~~~a~~~-~ri---~~~~g-D~f~~~ 253 (273)
+...+|-+.+ -+++..+|||+||+.|..+--.++. -...++ +..|+| +...... +++ +++.| ||++.-
T Consensus 60 yKL~EIdeK~-likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~--~~P~~~~~~Gv~~i~~~~G~Df~~~~ 136 (269)
T 2px2_A 60 AKLRWLVERR-FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGH--EEPMLMQSYGWNIVTMKSGVDVFYKP 136 (269)
T ss_dssp HHHHHHHHTT-SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTS--CCCCCCCSTTGGGEEEECSCCGGGSC
T ss_pred HHHHHHHHcC-CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccc--cCCCcccCCCceEEEeeccCCccCCC
Confidence 4445565665 4788899999999999999888875 222233 334431 1111111 455 55557 999844
Q ss_pred CC-CCEEEe
Q 024046 254 PE-GDAILM 261 (273)
Q Consensus 254 p~-~D~~~l 261 (273)
|. .|+|+.
T Consensus 137 ~~~~DvVLS 145 (269)
T 2px2_A 137 SEISDTLLC 145 (269)
T ss_dssp CCCCSEEEE
T ss_pred CCCCCEEEe
Confidence 43 498875
No 386
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=94.78 E-value=0.023 Score=40.39 Aligned_cols=51 Identities=12% Similarity=0.278 Sum_probs=41.1
Q ss_pred CCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhchHhh
Q 024046 59 LSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFV 113 (273)
Q Consensus 59 ~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~~l~ 113 (273)
.|..+||+.+++ ++..+.++++-|...|++......+...+.+|+.+..+.
T Consensus 31 ~t~~eLa~~l~i----~~~tvs~~l~~Le~~Glv~~~~d~R~~~v~LT~~G~~~~ 81 (95)
T 2qvo_A 31 VYIQYIASKVNS----PHSYVWLIIKKFEEAKMVECELEGRTKIIRLTDKGQKIA 81 (95)
T ss_dssp EEHHHHHHHSSS----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHH
T ss_pred cCHHHHHHHHCc----CHHHHHHHHHHHHHCcCccCCCCCCeEEEEEChhHHHHH
Confidence 899999999999 999999999999999999432101223589999887654
No 387
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=94.73 E-value=0.03 Score=46.24 Aligned_cols=51 Identities=22% Similarity=0.334 Sum_probs=45.3
Q ss_pred CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhchHhh
Q 024046 56 AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFV 113 (273)
Q Consensus 56 ~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~~l~ 113 (273)
.++.+..+||+.+++ ++..+.++++-|...|++++. ....+.+|+.++.+.
T Consensus 18 ~~~~~~~~lA~~l~v----s~~tvs~~l~~Le~~GlV~r~---~~~~i~LT~~G~~~~ 68 (214)
T 3hrs_A 18 HNKITNKEIAQLMQV----SPPAVTEMMKKLLAEELLIKD---KKAGYLLTDLGLKLV 68 (214)
T ss_dssp CSCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE---TTTEEEECHHHHHHH
T ss_pred CCCcCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEEe---cCCCeEECHHHHHHH
Confidence 369999999999999 999999999999999999983 456799999987654
No 388
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Probab=94.72 E-value=0.028 Score=55.18 Aligned_cols=67 Identities=12% Similarity=0.149 Sum_probs=47.7
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCC---CeEEEeec-hHHHHhC--C----C----C--CCceEEEcccCCC--CC-C
Q 024046 195 FQNVERLVDVGGGFGVTLSMITSKYPQ---IKAVNFDL-PHVVQDA--P----S----Y--AGVEHVGGNMFES--VP-E 255 (273)
Q Consensus 195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~---l~~~~~Dl-p~v~~~a--~----~----~--~ri~~~~gD~f~~--~p-~ 255 (273)
+....+|+|.|||+|.++.+++++.++ .+.+++|+ |.+++.| + . + +...+...|++.+ .+ .
T Consensus 319 l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~ 398 (878)
T 3s1s_A 319 LTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFA 398 (878)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGT
T ss_pred CCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccC
Confidence 345689999999999999999999873 57899998 7666655 1 1 1 2245666777763 22 2
Q ss_pred C-CEEEe
Q 024046 256 G-DAILM 261 (273)
Q Consensus 256 ~-D~~~l 261 (273)
. |+|+.
T Consensus 399 kFDVVIg 405 (878)
T 3s1s_A 399 NVSVVVM 405 (878)
T ss_dssp TEEEEEE
T ss_pred CCCEEEE
Confidence 2 88876
No 389
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=94.64 E-value=0.037 Score=44.48 Aligned_cols=69 Identities=13% Similarity=0.104 Sum_probs=54.8
Q ss_pred HHHHhChhHHHHh--CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCC---cceecChhchHhhcC
Q 024046 43 AAIQLGVFEIIAK--AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFVSN 115 (273)
Q Consensus 43 ~a~elglfd~L~~--~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---~~y~lt~~s~~l~~~ 115 (273)
+..+..++..|.. .|+.|..+||+.+++ ++..+.++++-|...|+++......+ -.+.+|+.+..+...
T Consensus 40 t~~q~~vL~~L~~~~~~~~t~~eLa~~l~i----s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~ 113 (189)
T 3nqo_A 40 TSRQYMTILSILHLPEEETTLNNIARKMGT----SKQNINRLVANLEKNGYVDVIPSPHDKRAINVKVTDLGKKVMVT 113 (189)
T ss_dssp CHHHHHHHHHHHHSCGGGCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHHH
Confidence 4566778888875 368999999999999 99999999999999999997432112 358899998766543
No 390
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=94.62 E-value=0.038 Score=42.64 Aligned_cols=46 Identities=20% Similarity=0.200 Sum_probs=41.7
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceec
Q 024046 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (273)
Q Consensus 45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~ 94 (273)
.+..|+..|...|+.|..|||+.+|+ ++..+.+.++.|...|++..
T Consensus 8 ~~~~iL~~L~~~~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 53 (150)
T 2w25_A 8 IDRILVRELAADGRATLSELATRAGL----SVSAVQSRVRRLESRGVVQG 53 (150)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEE
Confidence 45668888887789999999999999 99999999999999999975
No 391
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=94.58 E-value=0.04 Score=42.28 Aligned_cols=46 Identities=24% Similarity=0.393 Sum_probs=41.7
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceec
Q 024046 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (273)
Q Consensus 45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~ 94 (273)
.+..|++.|...++.|..|||+.+|+ ++..+.+.++.|...|++..
T Consensus 6 ~d~~il~~L~~~~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 51 (144)
T 2cfx_A 6 IDLNIIEELKKDSRLSMRELGRKIKL----SPPSVTERVRQLESFGIIKQ 51 (144)
T ss_dssp HHHHHHHHHHHCSCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEE
Confidence 35568888988789999999999999 99999999999999999985
No 392
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=94.54 E-value=0.032 Score=43.04 Aligned_cols=46 Identities=22% Similarity=0.326 Sum_probs=42.1
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceec
Q 024046 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (273)
Q Consensus 45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~ 94 (273)
.+..|+..|...++.|..+||+.+|+ ++..+.+.++.|...|++..
T Consensus 4 ~~~~il~~L~~~~~~~~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 49 (150)
T 2pn6_A 4 IDLRILKILQYNAKYSLDEIAREIRI----PKATLSYRIKKLEKDGVIKG 49 (150)
T ss_dssp HHHHHHHHHTTCTTSCHHHHHHHHTS----CHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEE
Confidence 46678889988779999999999999 99999999999999999985
No 393
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=94.52 E-value=0.051 Score=41.88 Aligned_cols=46 Identities=20% Similarity=0.294 Sum_probs=39.2
Q ss_pred CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecCh
Q 024046 57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP 107 (273)
Q Consensus 57 g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~ 107 (273)
++.|.++||+.+++ ++..++++|..|...|+++... +..|.|.++.
T Consensus 27 ~~~s~~~IA~~~~i----~~~~l~kil~~L~~aGlv~s~r-G~~GGy~Lar 72 (143)
T 3t8r_A 27 GCISLKSIAEENNL----SDLYLEQLVGPLRNAGLIRSVR-GAKGGYQLRV 72 (143)
T ss_dssp CCEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEECS-SSSSEEEESS
T ss_pred CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCEEEecC-CCCCCeeecC
Confidence 38999999999999 9999999999999999998643 2346787765
No 394
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=94.51 E-value=0.039 Score=37.54 Aligned_cols=55 Identities=13% Similarity=0.289 Sum_probs=46.6
Q ss_pred HHhChhHHHHhCC-CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecC
Q 024046 45 IQLGVFEIIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALN 106 (273)
Q Consensus 45 ~elglfd~L~~~g-~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt 106 (273)
.+-.|+++|.+.| |++..+||+.+|+ +...+...|..|...|.+..+ ..-.|.++
T Consensus 20 ~eekVLe~LkeaG~PlkageIae~~Gv----dKKeVdKaik~LKkEgkI~SP---kRCyw~~~ 75 (80)
T 2lnb_A 20 LEQRILQVLTEAGSPVKLAQLVKECQA----PKRELNQVLYRMKKELKVSLT---SPATWCLG 75 (80)
T ss_dssp HHHHHHHHHHHHTSCEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE---ETTEEEES
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHcCCccCC---CCceeeCC
Confidence 3556888999887 9999999999999 999999999999999999863 34556665
No 395
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=94.49 E-value=0.044 Score=42.45 Aligned_cols=62 Identities=11% Similarity=0.112 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChh
Q 024046 37 LPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPV 108 (273)
Q Consensus 37 ~~~aL~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~ 108 (273)
...+|++.+.+... ..++.|+++||+.+++ ++..++++|..|...|+++... +.|.|.++..
T Consensus 13 ~~yAl~~L~~La~~----~~~~~~~~~iA~~~~i----~~~~l~kil~~L~~~Glv~s~r--G~GGy~L~~~ 74 (149)
T 1ylf_A 13 FSIAVHILSILKNN----PSSLCTSDYMAESVNT----NPVVIRKIMSYLKQAGFVYVNR--GPGGAGLLKD 74 (149)
T ss_dssp HHHHHHHHHHHHHS----CGGGCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEC-----CCEEESSC
T ss_pred HHHHHHHHHHHHhC----CCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEcc--CCCceEeCCC
Confidence 34456655555331 2248999999999999 9999999999999999998653 2567877654
No 396
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=94.43 E-value=0.03 Score=41.98 Aligned_cols=46 Identities=13% Similarity=0.245 Sum_probs=40.6
Q ss_pred HHhChhHHHHhCC-C-CCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceec
Q 024046 45 IQLGVFEIIAKAG-E-LSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (273)
Q Consensus 45 ~elglfd~L~~~g-~-~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~ 94 (273)
.+..|+..|...+ | .|+.|||+.+++ +...+.|.|+.|...|++.+
T Consensus 27 ~e~~il~~L~~~~~~~~t~~eLa~~l~~----s~sTV~r~L~~L~~~GlV~r 74 (123)
T 3r0a_A 27 ADLNVMKSFLNEPDRWIDTDALSKSLKL----DVSTVQRSVKKLHEKEILQR 74 (123)
T ss_dssp HHHHHHHHHHHSTTCCEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHCCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEe
Confidence 3566788887655 4 899999999999 99999999999999999986
No 397
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=94.34 E-value=0.062 Score=41.82 Aligned_cols=84 Identities=17% Similarity=0.188 Sum_probs=60.8
Q ss_pred HHhChhHHHHhC--CCCCHHHHHHHhC-cCCCCCcchHHHHHHHHhcCCceecccc----CCCc----ceecChhchHhh
Q 024046 45 IQLGVFEIIAKA--GELSAPEIAAQLQ-AQNVKAPMMLDRMLRLLVSHRVLECSVS----GGER----LYALNPVSKYFV 113 (273)
Q Consensus 45 ~elglfd~L~~~--g~~t~~eLA~~~g-~~~~~~~~~l~rlL~~L~~~gll~~~~~----~~~~----~y~lt~~s~~l~ 113 (273)
.++.|+..|... +..|+++|++.++ + +...+.|.|+.|+..|++++... .+.| .|.+|+.+..++
T Consensus 30 tR~~IL~~Ll~~p~~~~ta~eL~~~l~~l----S~aTVyrhL~~L~eaGLV~~~~~~~~~~~rGrP~k~Y~LT~~Gr~~l 105 (151)
T 3u1d_A 30 TRLDVLHQILAQPDGVLSVEELLYRNPDE----TEANLRYHVDELVDRGIVEKIPVPRAKSVDDPPTTFYAVTGEGIALL 105 (151)
T ss_dssp HHHHHHHHHHHSTTSCBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEECCCCTTSSSCCCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHhcCCC----CHHHHHHHHHHHHHCCCeEEeecCcCcccCCCCceEEEECHHHHHHH
Confidence 677778887664 3579999999999 8 99999999999999999995321 0112 799999998665
Q ss_pred cCCCCCccchhhcccCChhHHHHhhhHHHHH
Q 024046 114 SNKDGASLGHFMALPLDKVFMESWLGLKDAV 144 (273)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~e~l 144 (273)
...+ ++ .-..+|..|.+.+
T Consensus 106 ~~y~------~l------a~~~alr~l~~~v 124 (151)
T 3u1d_A 106 RAVS------MY------EEAAVWRSVYEQM 124 (151)
T ss_dssp HHTT------CS------THHHHTHHHHHHS
T ss_pred HHhH------HH------hHHHHHHHHHHHh
Confidence 4321 11 0225777777776
No 398
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=94.30 E-value=0.049 Score=42.66 Aligned_cols=46 Identities=15% Similarity=0.338 Sum_probs=41.9
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceec
Q 024046 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (273)
Q Consensus 45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~ 94 (273)
.+..|+..|...++.|..|||+.+|+ ++..+.+.++.|...|++..
T Consensus 11 ~~~~il~~L~~~~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 56 (162)
T 2p5v_A 11 TDIKILQVLQENGRLTNVELSERVAL----SPSPCLRRLKQLEDAGIVRQ 56 (162)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEee
Confidence 45568888988789999999999999 99999999999999999985
No 399
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=94.22 E-value=0.018 Score=46.40 Aligned_cols=68 Identities=24% Similarity=0.295 Sum_probs=53.3
Q ss_pred HHHHHHHHHhChhHHHHhCCCCCHHHHHHHhC-cCCCCCcchHHHHHHHHhcCCceeccccC--C---CcceecChhch
Q 024046 38 PMATQAAIQLGVFEIIAKAGELSAPEIAAQLQ-AQNVKAPMMLDRMLRLLVSHRVLECSVSG--G---ERLYALNPVSK 110 (273)
Q Consensus 38 ~~aL~~a~elglfd~L~~~g~~t~~eLA~~~g-~~~~~~~~~l~rlL~~L~~~gll~~~~~~--~---~~~y~lt~~s~ 110 (273)
..+|.--.++.|+..|.+ |+.|+.+|++.++ + +...+.+.|+.|...||++..... . ...|++++.+.
T Consensus 17 ~~~La~P~Rl~il~~L~~-~~~~~~~l~~~l~~~----~~~~~s~Hl~~L~~aglv~~~~e~~~~g~~er~y~~~~~~~ 90 (182)
T 4g6q_A 17 VDLLHHPLRWRITQLLIG-RSLTTRELAELLPDV----ATTTLYRQVGILVKAGVLMVTAEHQVRGAVERTYTLNTQAG 90 (182)
T ss_dssp HHHTTSHHHHHHHHHTTT-SCEEHHHHHHHCTTB----CHHHHHHHHHHHHHHTSEEEEEEEEETTEEEEEEEECTTTT
T ss_pred HHHhCCHHHHHHHHHHHh-CCCCHHHHHHHhcCC----CHHHHHHHHHHHHHCCCeEEEEeecccCcceeEEEeccccc
Confidence 455666789999999986 7999999999996 8 888999999999999999853210 1 13577777553
No 400
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=94.21 E-value=0.04 Score=40.14 Aligned_cols=46 Identities=26% Similarity=0.341 Sum_probs=39.7
Q ss_pred HHhChhHHHHhCC-CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceec
Q 024046 45 IQLGVFEIIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (273)
Q Consensus 45 ~elglfd~L~~~g-~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~ 94 (273)
.++.|+..|...| +.|..+||+.+|+ +...+++.|..|...|+++.
T Consensus 19 ~~l~Il~~l~~~g~~~s~~eLa~~lgv----s~~tV~~~L~~L~~~GlV~~ 65 (110)
T 1q1h_A 19 DVIDVLRILLDKGTEMTDEEIANQLNI----KVNDVRKKLNLLEEQGFVSY 65 (110)
T ss_dssp TTHHHHHHHHHHCSCBCHHHHHHTTTS----CHHHHHHHHHHHHHHTSCEE
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEE
Confidence 3456777775446 8999999999999 99999999999999999986
No 401
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=94.13 E-value=0.092 Score=40.54 Aligned_cols=64 Identities=17% Similarity=0.129 Sum_probs=48.8
Q ss_pred HhChhHHHHhCC-CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCC---cceecChhchHhh
Q 024046 46 QLGVFEIIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV 113 (273)
Q Consensus 46 elglfd~L~~~g-~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---~~y~lt~~s~~l~ 113 (273)
+..++-.|...+ +.+..+||+.+++ ++..+.++++-|...|++++.....+ -...+|+.+..+.
T Consensus 33 q~~vL~~L~~~~~~~~~~eLa~~l~~----~~~tvs~~v~~Le~~GlV~R~~~~~DrR~~~l~LT~~G~~~~ 100 (151)
T 4aik_A 33 HWVTLYNINRLPPEQSQIQLAKAIGI----EQPSLVRTLDQLEEKGLITRHTSANDRRAKRIKLTEQSSPII 100 (151)
T ss_dssp HHHHHHHHHHSCTTSCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECGGGHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHCc----CHHHHHHHHHHHHhCCCeEeecCCCCCcchhhhcCHHHHHHH
Confidence 444666676544 6788999999999 99999999999999999986432122 2477888887654
No 402
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=94.08 E-value=0.032 Score=45.68 Aligned_cols=66 Identities=14% Similarity=-0.062 Sum_probs=52.3
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCC---cceecChhchHhhc
Q 024046 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFVS 114 (273)
Q Consensus 45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---~~y~lt~~s~~l~~ 114 (273)
.+..|+..|...++.|..+||+.+++ ++..+.++++-|...|++.+.....+ -.+.+|+.+..+..
T Consensus 49 ~q~~iL~~L~~~~~~t~~eLa~~l~i----~~stvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~ 117 (207)
T 2fxa_A 49 NEHHILWIAYQLNGASISEIAKFGVM----HVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVFW 117 (207)
T ss_dssp HHHHHHHHHHHHTSEEHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEecCCCCCceEEEEECHHHHHHHH
Confidence 45557778877679999999999999 99999999999999999997421111 26889999876653
No 403
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=94.04 E-value=0.011 Score=49.61 Aligned_cols=68 Identities=7% Similarity=0.145 Sum_probs=53.9
Q ss_pred HHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceec-cccCC-----CcceecChhch
Q 024046 38 PMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC-SVSGG-----ERLYALNPVSK 110 (273)
Q Consensus 38 ~~aL~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~-~~~~~-----~~~y~lt~~s~ 110 (273)
..+|....++.|+..|.. ||.|+.+||+.+|+ ++..+.+.|+.|...|++.. ..... .-.|++|+.+.
T Consensus 6 lkaL~~~~R~~IL~~L~~-g~~s~~ELa~~lgl----S~stVs~hL~~Le~aGLV~~~~~~gr~~GRp~~~Y~Lt~~~~ 79 (232)
T 2qlz_A 6 FYILGNKVRRDLLSHLTC-MECYFSLLSSKVSV----SSTAVAKHLKIMEREGVLQSYEKEERFIGPTKKYYKISIAKS 79 (232)
T ss_dssp HHHHTSHHHHHHHHHHTT-TTTCSSSSCTTCCC----CHHHHHHHHHHHHHTTSEEEEEECC-----CEEEEEECCCEE
T ss_pred HHHhCCHHHHHHHHHHHh-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeeecCCCCCCccEEEEEccchh
Confidence 455666778889999986 89999999999999 99999999999999999987 21111 12488877553
No 404
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=93.98 E-value=0.043 Score=42.40 Aligned_cols=46 Identities=20% Similarity=0.253 Sum_probs=41.8
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceec
Q 024046 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (273)
Q Consensus 45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~ 94 (273)
.+..|+..|...|+.|..+||+.+|+ ++..+.+.++.|...|++..
T Consensus 8 ~~~~il~~L~~~~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 53 (151)
T 2cyy_A 8 IDKKIIKILQNDGKAPLREISKITGL----AESTIHERIRKLRESGVIKK 53 (151)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHCS----CHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEE
Confidence 35568888988789999999999999 99999999999999999985
No 405
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=93.86 E-value=0.053 Score=41.92 Aligned_cols=46 Identities=13% Similarity=0.268 Sum_probs=41.8
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceec
Q 024046 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (273)
Q Consensus 45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~ 94 (273)
.+..|+..|.+.++.|..|||+.+|+ ++..+.+.++.|...|++..
T Consensus 9 ~d~~il~~L~~~~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 54 (152)
T 2cg4_A 9 LDRGILEALMGNARTAYAELAKQFGV----SPETIHVRVEKMKQAGIITG 54 (152)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHHHHTS----CHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHcCCcce
Confidence 35568888988789999999999999 99999999999999999985
No 406
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=93.82 E-value=0.031 Score=41.36 Aligned_cols=66 Identities=20% Similarity=0.204 Sum_probs=46.6
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCc--c-eecChhchHh
Q 024046 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER--L-YALNPVSKYF 112 (273)
Q Consensus 45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~--~-y~lt~~s~~l 112 (273)
.+..|+..|...++.|..+||+.++..++.++..+.++|+-|...|++++.. .+. . +.+|+.+..+
T Consensus 11 ~~~~vL~~l~~~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~~Glv~r~~--~~rr~~~~~lT~~g~~~ 79 (123)
T 1okr_A 11 AEWEVMNIIWMKKYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKK--DNKIFQYYSLVEESDIK 79 (123)
T ss_dssp HHHHHHHHHHHHSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEEE--ETTEEEEEESSCHHHHH
T ss_pred HHHHHHHHHHhCCCcCHHHHHHHHhccCCCcHhhHHHHHHHHHHCCCeEEEe--cCCeEEEEEecCHHHHH
Confidence 3455666776657999999999999310117999999999999999999742 122 1 3466665544
No 407
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=93.81 E-value=0.059 Score=42.81 Aligned_cols=47 Identities=19% Similarity=0.248 Sum_probs=42.8
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceec
Q 024046 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (273)
Q Consensus 44 a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~ 94 (273)
..+..|+..|...++.|..|||+.+|+ ++..+.+.++.|...|++..
T Consensus 27 ~~d~~IL~~L~~~~~~s~~eLA~~lgl----S~~tv~~rl~~L~~~G~I~~ 73 (171)
T 2e1c_A 27 EIDKKIIKILQNDGKAPLREISKITGL----AESTIHERIRKLRESGVIKK 73 (171)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEe
Confidence 356678999988789999999999999 99999999999999999985
No 408
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=93.79 E-value=0.072 Score=43.19 Aligned_cols=52 Identities=10% Similarity=0.217 Sum_probs=45.7
Q ss_pred HHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecc
Q 024046 39 MATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (273)
Q Consensus 39 ~aL~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~ 95 (273)
.++....+..|+..|.+ |+.|..|||+.+|+ ++..+.+.++.|...|++...
T Consensus 15 k~l~d~~~~~IL~~L~~-~~~s~~eLA~~lgl----S~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 15 KVMLEDTRRKILKLLRN-KEMTISQLSEILGK----TPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HHHHSHHHHHHHHHHTT-CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHhCCHHHHHHHHHHHc-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 34455677889999985 89999999999999 999999999999999999874
No 409
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=93.75 E-value=0.071 Score=42.30 Aligned_cols=46 Identities=17% Similarity=0.336 Sum_probs=41.9
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceec
Q 024046 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (273)
Q Consensus 45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~ 94 (273)
.+..|+..|...++.|..|||+.+|+ ++..+.+.++.|...|++..
T Consensus 18 ~d~~IL~~L~~~~~~s~~eLA~~lgl----S~~tv~~~l~~L~~~G~I~~ 63 (171)
T 2ia0_A 18 LDRNILRLLKKDARLTISELSEQLKK----PESTIHFRIKKLQERGVIER 63 (171)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEe
Confidence 45568889988789999999999999 99999999999999999975
No 410
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=93.73 E-value=0.056 Score=42.42 Aligned_cols=46 Identities=11% Similarity=0.215 Sum_probs=42.3
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceec
Q 024046 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (273)
Q Consensus 45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~ 94 (273)
.+..|++.|.+.|+.|..+||+.+|+ ++..+.+-++-|...|++..
T Consensus 4 ~d~~il~~L~~~~~~s~~~la~~lg~----s~~tv~~rl~~L~~~g~i~~ 49 (162)
T 3i4p_A 4 LDRKILRILQEDSTLAVADLAKKVGL----STTPCWRRIQKMEEDGVIRR 49 (162)
T ss_dssp HHHHHHHHHTTCSCSCHHHHHHHHTC----CHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeee
Confidence 45678899988789999999999999 99999999999999999984
No 411
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=93.70 E-value=0.061 Score=41.47 Aligned_cols=46 Identities=15% Similarity=0.282 Sum_probs=41.9
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceec
Q 024046 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (273)
Q Consensus 45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~ 94 (273)
.+..|+..|...++.|..|||+.+|+ ++..+.+.++.|...|++..
T Consensus 10 ~d~~il~~L~~~~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 55 (151)
T 2dbb_A 10 VDMQLVKILSENSRLTYRELADILNT----TRQRIARRIDKLKKLGIIRK 55 (151)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHTTS----CHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEE
Confidence 45568888988789999999999999 99999999999999999985
No 412
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=93.63 E-value=0.073 Score=41.94 Aligned_cols=47 Identities=26% Similarity=0.432 Sum_probs=39.9
Q ss_pred CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChh
Q 024046 57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPV 108 (273)
Q Consensus 57 g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~ 108 (273)
++.|.++||+.+++ ++..++++|..|...|+++-..+ ..|.|++...
T Consensus 27 ~~~s~~~IA~~~~i----s~~~l~kil~~L~~aGlv~s~rG-~~GGy~Lar~ 73 (162)
T 3k69_A 27 SKVASRELAQSLHL----NPVMIRNILSVLHKHGYLTGTVG-KNGGYQLDLA 73 (162)
T ss_dssp SCBCHHHHHHHHTS----CGGGTHHHHHHHHHTTSSEEECS-TTCEEECCSC
T ss_pred CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeecC-CCCCeEecCC
Confidence 48999999999999 99999999999999999986532 3466888753
No 413
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=93.63 E-value=0.047 Score=41.96 Aligned_cols=63 Identities=16% Similarity=0.255 Sum_probs=47.1
Q ss_pred hChhHHHHh--CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCC---cceecChhchHhh
Q 024046 47 LGVFEIIAK--AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV 113 (273)
Q Consensus 47 lglfd~L~~--~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---~~y~lt~~s~~l~ 113 (273)
..++..|.. .|+.|..+||+.+++ ++..+.++++-|...|++++.....+ -...+|+.++.+.
T Consensus 38 ~~vL~~L~~~~~~~~t~~eLa~~l~~----~~~tvs~~v~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~ 105 (147)
T 4b8x_A 38 YEALVLLTFSKSGELPMSKIGERLMV----HPTSVTNTVDRLVRSGLVAKRPNPNDGRGTLATITDKGREVV 105 (147)
T ss_dssp HHHHHHHHTSGGGEEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECC----CEEEEECHHHHHHH
T ss_pred HHHHHHHHHCCCCCcCHHHHHHHHCC----CHHHHHHHHHHHHhCCCEEEeecCCcCceeEEEECHHHHHHH
Confidence 334555542 358999999999999 99999999999999999997432122 2477888886654
No 414
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=93.63 E-value=0.085 Score=45.58 Aligned_cols=50 Identities=24% Similarity=0.253 Sum_probs=38.9
Q ss_pred HHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC
Q 024046 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS 238 (273)
Q Consensus 185 ~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~ 238 (273)
+..++..+. .....|||++||+|..+.++++.. -+++++|+ |..++.|++
T Consensus 225 ~~~~i~~~~--~~~~~vlD~f~GsGt~~~~a~~~g--~~~~g~e~~~~~~~~a~~ 275 (297)
T 2zig_A 225 AERLVRMFS--FVGDVVLDPFAGTGTTLIAAARWG--RRALGVELVPRYAQLAKE 275 (297)
T ss_dssp HHHHHHHHC--CTTCEEEETTCTTTHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHcC--CeEEEEeCCHHHHHHHHH
Confidence 455666554 356799999999999999988864 57999999 777777654
No 415
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=93.63 E-value=0.035 Score=40.07 Aligned_cols=51 Identities=25% Similarity=0.262 Sum_probs=41.7
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecc
Q 024046 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (273)
Q Consensus 45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~ 95 (273)
.+..|+..|-+.|+.|+.||++.++..++.++.-+.++|+-|+..|++.+.
T Consensus 36 ~e~~VL~~L~~~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~ 86 (99)
T 2k4b_A 36 AELIVMRVIWSLGEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTE 86 (99)
T ss_dssp SCSHHHHHHHHHSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEE
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEE
Confidence 355688888776899999999999852122578999999999999999974
No 416
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=93.63 E-value=0.056 Score=41.05 Aligned_cols=45 Identities=20% Similarity=0.285 Sum_probs=40.6
Q ss_pred HhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceec
Q 024046 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (273)
Q Consensus 46 elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~ 94 (273)
+..|+..|...++.|..+||+.+|+ ++..+.+.++.|...|++..
T Consensus 6 ~~~il~~L~~~~~~~~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 50 (141)
T 1i1g_A 6 DKIILEILEKDARTPFTEIAKKLGI----SETAVRKRVKALEEKGIIEG 50 (141)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHTS----CHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEec
Confidence 4567888877679999999999999 99999999999999999975
No 417
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=93.62 E-value=0.064 Score=38.32 Aligned_cols=36 Identities=11% Similarity=0.232 Sum_probs=33.8
Q ss_pred CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecc
Q 024046 56 AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (273)
Q Consensus 56 ~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~ 95 (273)
.++.|..|||+.+|+ +...+.+.|+.|...|+++..
T Consensus 34 ~~~~t~~ela~~l~i----s~~tv~~~l~~L~~~g~v~~~ 69 (109)
T 2d1h_A 34 EKPITSEELADIFKL----SKTTVENSLKKLIELGLVVRT 69 (109)
T ss_dssp CSCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEee
Confidence 469999999999999 999999999999999999974
No 418
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=93.45 E-value=0.066 Score=44.46 Aligned_cols=54 Identities=11% Similarity=0.122 Sum_probs=44.7
Q ss_pred CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhchHhhc
Q 024046 57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVS 114 (273)
Q Consensus 57 g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~~l~~ 114 (273)
++.|+.++|+.+++ ++..+.+.++.|...|+|++....+...+.+|+.++.+..
T Consensus 26 ~~~s~s~aA~~L~i----sq~avSr~I~~LE~~~L~~R~~~~R~~~v~LT~~G~~l~~ 79 (230)
T 3cta_A 26 AYLTSSKLADMLGI----SQQSASRIIIDLEKNGYITRTVTKRGQILNITEKGLDVLY 79 (230)
T ss_dssp EECCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHH
T ss_pred CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEEEcCCeEEEEECHHHHHHHH
Confidence 36889999999999 9999999999999999999731112467889999887653
No 419
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=93.21 E-value=0.045 Score=43.47 Aligned_cols=65 Identities=12% Similarity=0.149 Sum_probs=49.7
Q ss_pred HHhChhHHHHhCCC---CCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCC---cceecChhchHhh
Q 024046 45 IQLGVFEIIAKAGE---LSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV 113 (273)
Q Consensus 45 ~elglfd~L~~~g~---~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---~~y~lt~~s~~l~ 113 (273)
.++.|+..|...++ .|..+||+.+++ ++..+.++++-|...|++++.....+ -.+.+|+.+..+.
T Consensus 70 ~~~~iL~~L~~~~~~~~~t~~eLa~~l~i----s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~ 140 (181)
T 2fbk_A 70 AGWDLLLTLYRSAPPEGLRPTELSALAAI----SGPSTSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRALV 140 (181)
T ss_dssp HHHHHHHHHHHHCCSSCBCHHHHHHHCSC----CSGGGSSHHHHHHHHTSEECCC-------CCBEECHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCcCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 45668888877554 899999999999 99999999999999999997321011 2477888776554
No 420
>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A
Probab=93.21 E-value=0.12 Score=45.55 Aligned_cols=76 Identities=12% Similarity=0.145 Sum_probs=57.5
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhCCC---------------------------CCCceEEEcc
Q 024046 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS---------------------------YAGVEHVGGN 248 (273)
Q Consensus 196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~---------------------------~~ri~~~~gD 248 (273)
.+...||.+|||.....-.|...+|+++.+=+|+|+|++.-+. .++..+++.|
T Consensus 96 ~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D 175 (334)
T 1rjd_A 96 NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD 175 (334)
T ss_dssp CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred CCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence 3568999999999999999999999999999999998774321 1689999999
Q ss_pred cCC-CC--------C--CC-CEEEecccccccCCC
Q 024046 249 MFE-SV--------P--EG-DAILMKVGNFENYQS 271 (273)
Q Consensus 249 ~f~-~~--------p--~~-D~~~l~~vLHd~~~~ 271 (273)
+.+ ++ + .. .+++.=-+|+..+++
T Consensus 176 L~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~ 210 (334)
T 1rjd_A 176 LNDITETTRLLDVCTKREIPTIVISECLLCYMHNN 210 (334)
T ss_dssp TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHH
T ss_pred CCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHH
Confidence 987 22 1 11 456666666665543
No 421
>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}
Probab=93.19 E-value=0.078 Score=45.51 Aligned_cols=46 Identities=22% Similarity=0.142 Sum_probs=36.7
Q ss_pred hhHHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec
Q 024046 183 IAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL 229 (273)
Q Consensus 183 ~~~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl 229 (273)
+....+.+.+- +....+|||+|||.|.++.-++++.|-.+++++|+
T Consensus 77 fKL~ei~eK~~-Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~Gvdv 122 (282)
T 3gcz_A 77 AKLRWMEERGY-VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTL 122 (282)
T ss_dssp HHHHHHHHTTS-CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECC
T ss_pred HHHHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEe
Confidence 44456666664 77778999999999999999888888766777877
No 422
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*
Probab=93.10 E-value=0.22 Score=42.59 Aligned_cols=81 Identities=14% Similarity=0.093 Sum_probs=46.4
Q ss_pred HHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHH-hCCCC----CCceEEEcccC-CCCCC--C
Q 024046 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQ-DAPSY----AGVEHVGGNMF-ESVPE--G 256 (273)
Q Consensus 185 ~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v~~-~a~~~----~ri~~~~gD~f-~~~p~--~ 256 (273)
...+.+..- ++...+|||+|||.|.++--++++.|-.+++.+|+-.-.. ..... ..+..+.+++- .+++. .
T Consensus 63 L~ei~ek~~-l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~ 141 (277)
T 3evf_A 63 LRWFHERGY-VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLEPVKC 141 (277)
T ss_dssp HHHHHHTTS-SCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSCCCCC
T ss_pred HHHHHHhCC-CCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCCCCeEEEeccceehhcCCCCc
Confidence 344445533 6677899999999999999888877655555555421111 01111 13444455431 13443 3
Q ss_pred CEEEeccccc
Q 024046 257 DAILMKVGNF 266 (273)
Q Consensus 257 D~~~l~~vLH 266 (273)
|+|+.-...+
T Consensus 142 DlVlsD~apn 151 (277)
T 3evf_A 142 DTLLCDIGES 151 (277)
T ss_dssp SEEEECCCCC
T ss_pred cEEEecCccC
Confidence 9988765443
No 423
>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}
Probab=92.83 E-value=0.091 Score=45.43 Aligned_cols=77 Identities=18% Similarity=0.252 Sum_probs=50.6
Q ss_pred hHHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHh----CCCC--CCceEEEc-ccCCCCCC-
Q 024046 184 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQD----APSY--AGVEHVGG-NMFESVPE- 255 (273)
Q Consensus 184 ~~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~----a~~~--~ri~~~~g-D~f~~~p~- 255 (273)
....+.+.+. +.....||||||+.|.++--.+....-.+++++|+-..--. .+.. +-|+++.+ |++.--|.
T Consensus 82 KL~ei~~~~~-l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~~~ 160 (321)
T 3lkz_A 82 KLRWLVERRF-LEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPSEC 160 (321)
T ss_dssp HHHHHHHTTS-CCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCCCC
T ss_pred HHHHHHHhcC-CCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCCCC
Confidence 3445556554 66677999999999999997776666557899998221000 0111 44889988 97762222
Q ss_pred CCEEEe
Q 024046 256 GDAILM 261 (273)
Q Consensus 256 ~D~~~l 261 (273)
.|++++
T Consensus 161 ~D~ivc 166 (321)
T 3lkz_A 161 CDTLLC 166 (321)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 587765
No 424
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=92.79 E-value=0.054 Score=49.88 Aligned_cols=66 Identities=20% Similarity=0.208 Sum_probs=52.3
Q ss_pred HHHhChhHHHHhC--CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCC---cceecChhchHhh
Q 024046 44 AIQLGVFEIIAKA--GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV 113 (273)
Q Consensus 44 a~elglfd~L~~~--g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---~~y~lt~~s~~l~ 113 (273)
.-+..++..|.+. ++.|..|||+.+++ ++..+.|+++-|...|++++.....+ -...+|+.++.+.
T Consensus 404 ~~q~~vl~~l~~~~~~~~~~~~l~~~~~~----~~~~~t~~~~~le~~g~v~r~~~~~D~R~~~i~lT~~g~~~~ 474 (487)
T 1hsj_A 404 YEEIYILNHILRSESNEISSKEIAKCSEF----KPYYLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDTQKANI 474 (487)
T ss_dssp HHHHHHHHHHHTCSCSEEEHHHHHHSSCC----CHHHHHHHHHHHHTTTTSCCEECCSSSSCCEEECCSSHHHHH
T ss_pred HHHHHHHHHHHhCCCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeecCCCCCCCeEEEEECHHHHHHH
Confidence 3456678888887 78999999999999 99999999999999999997432122 2567787776554
No 425
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=92.73 E-value=0.57 Score=34.58 Aligned_cols=70 Identities=19% Similarity=0.245 Sum_probs=53.5
Q ss_pred HHHHHHHHhChhHHHHhCCCCCHHHHHHHh------CcCCCCCcchHHHHHHHHhcCCceeccccC-----CCcceecCh
Q 024046 39 MATQAAIQLGVFEIIAKAGELSAPEIAAQL------QAQNVKAPMMLDRMLRLLVSHRVLECSVSG-----GERLYALNP 107 (273)
Q Consensus 39 ~aL~~a~elglfd~L~~~g~~t~~eLA~~~------g~~~~~~~~~l~rlL~~L~~~gll~~~~~~-----~~~~y~lt~ 107 (273)
+.+.-.+++=|+-.|.. +|.+.-+|++.+ ++ ++..+...|+-|...|+++..... ....|++|+
T Consensus 6 ~l~~g~l~~~IL~lL~~-~p~~Gyei~~~l~~~g~~~i----s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~ 80 (117)
T 4esf_A 6 EMLKGSLEGCVLEIISR-RETYGYEITRHLNDLGFTEV----VEGTVYTILVRLEKKKLVNIEKKPSDMGPPRKFYSLNE 80 (117)
T ss_dssp HHHHHHHHHHHHHHHHH-SCBCHHHHHHHHHHHTCTTC----CHHHHHHHHHHHHHTTCEEEEEEC-----CEEEEEECH
T ss_pred HHHHChHHHHHHHHHHc-CCCCHHHHHHHHHHcCCCCC----CccHHHHHHHHHHHCCCEEEEeecCCCCCCceEEEECH
Confidence 34455566667778877 799999999998 67 999999999999999999864210 113599999
Q ss_pred hchHhh
Q 024046 108 VSKYFV 113 (273)
Q Consensus 108 ~s~~l~ 113 (273)
.++..+
T Consensus 81 ~G~~~l 86 (117)
T 4esf_A 81 AGRQEL 86 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987654
No 426
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=92.66 E-value=0.11 Score=39.99 Aligned_cols=60 Identities=22% Similarity=0.296 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChh
Q 024046 37 LPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPV 108 (273)
Q Consensus 37 ~~~aL~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~ 108 (273)
...||.+.+.+.. .. ++ |.++||+..++ ++..++++|..|...|++.... +.|.|.++..
T Consensus 8 ~~yAl~~L~~La~----~~-~~-s~~~IA~~~~i----~~~~l~kIl~~L~~aGlv~s~r--G~GGy~Lar~ 67 (145)
T 1xd7_A 8 LAVAIHILSLISM----DE-KT-SSEIIADSVNT----NPVVVRRMISLLKKADILTSRA--GVPGASLKKD 67 (145)
T ss_dssp HHHHHHHHHHHHT----CS-CC-CHHHHHHHHTS----CHHHHHHHHHHHHHTTSEECCS--SSSSCEESSC
T ss_pred HHHHHHHHHHHHh----CC-CC-CHHHHHHHHCc----CHHHHHHHHHHHHHCCceEeec--CCCCceecCC
Confidence 3445555554422 12 35 99999999999 9999999999999999998753 2566777653
No 427
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=92.58 E-value=0.29 Score=36.11 Aligned_cols=68 Identities=16% Similarity=0.209 Sum_probs=52.9
Q ss_pred HHHHHHhChhHHHHhCCCCCHHHHHHHhC--------cCCCCCc-chHHHHHHHHhcCCceeccccC----CCcceecCh
Q 024046 41 TQAAIQLGVFEIIAKAGELSAPEIAAQLQ--------AQNVKAP-MMLDRMLRLLVSHRVLECSVSG----GERLYALNP 107 (273)
Q Consensus 41 L~~a~elglfd~L~~~g~~t~~eLA~~~g--------~~~~~~~-~~l~rlL~~L~~~gll~~~~~~----~~~~y~lt~ 107 (273)
+....++-|+..|.. +|.+.-+|++.+. + ++ ..+.+.|+-|...|+++..... ..-.|.+|+
T Consensus 10 ~~~~~~~~IL~~L~~-~~~~gyel~~~l~~~g~~~~~i----s~~~tly~~L~~Le~~GlI~~~~~~~~~~~r~~Y~LT~ 84 (118)
T 2esh_A 10 RGWWLASTILLLVAE-KPSHGYELAERLAEFGIEIPGI----GHMGNIYRVLADLEESGFLSTEWDTTVSPPRKIYRITP 84 (118)
T ss_dssp HHHHHHHHHHHHHHH-SCBCHHHHHHHHHTTCCSSTTC----CCCCCHHHHHHHHHHTTSEEEEEECSSSSCEEEEEECH
T ss_pred ccchHHHHHHHHHHc-CCCCHHHHHHHHHHhCCcccCC----CCcchHHHHHHHHHHCCCeEEEeecCCCCCceEEEECh
Confidence 445567778888877 7999999999984 6 88 8999999999999999864211 113689999
Q ss_pred hchHhh
Q 024046 108 VSKYFV 113 (273)
Q Consensus 108 ~s~~l~ 113 (273)
.+...+
T Consensus 85 ~G~~~l 90 (118)
T 2esh_A 85 QGKLYL 90 (118)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887654
No 428
>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}
Probab=92.36 E-value=0.13 Score=43.58 Aligned_cols=33 Identities=18% Similarity=0.330 Sum_probs=27.3
Q ss_pred CcceEEEecCCccHHHHHHHHH-------CCC-----CeEEEeec
Q 024046 197 NVERLVDVGGGFGVTLSMITSK-------YPQ-----IKAVNFDL 229 (273)
Q Consensus 197 ~~~~vvDVGGG~G~~~~~l~~~-------~P~-----l~~~~~Dl 229 (273)
+..+|+|||+|+|..+..+++. +|+ ++++.+|.
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~ 104 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEK 104 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEES
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEEC
Confidence 4579999999999988887665 784 67898986
No 429
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=92.27 E-value=0.097 Score=39.56 Aligned_cols=45 Identities=16% Similarity=0.161 Sum_probs=38.1
Q ss_pred hChhHHHH-hCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecc
Q 024046 47 LGVFEIIA-KAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (273)
Q Consensus 47 lglfd~L~-~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~ 95 (273)
..++..|. ..++.|+.|||+.+|+ ++..+.++++.|...|+++..
T Consensus 29 ~~il~~L~~~~~~~t~~ela~~l~~----~~stvs~~l~~L~~~G~v~r~ 74 (152)
T 1ku9_A 29 GAVYAILYLSDKPLTISDIMEELKI----SKGNVSMSLKKLEELGFVRKV 74 (152)
T ss_dssp HHHHHHHHHCSSCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 34555664 2369999999999999 999999999999999999974
No 430
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=92.26 E-value=0.13 Score=39.55 Aligned_cols=63 Identities=16% Similarity=0.279 Sum_probs=42.0
Q ss_pred HhChhHHHHhC-----CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCC---cceecChhchHhh
Q 024046 46 QLGVFEIIAKA-----GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV 113 (273)
Q Consensus 46 elglfd~L~~~-----g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---~~y~lt~~s~~l~ 113 (273)
+..++..|... ++.|..+||+.+++ ++..+.++++-|...|+++..+. .+ -...+|+.++.+.
T Consensus 35 q~~vL~~l~~~~~~~~~~~t~~eLa~~l~~----~~~tvsr~v~~Le~~glVr~~~~-~DrR~~~v~LT~~G~~~~ 105 (148)
T 4fx0_A 35 QFSTLAVISLSEGSAGIDLTMSELAARIGV----ERTTLTRNLEVMRRDGLVRVMAG-ADARCKRIELTAKGRAAL 105 (148)
T ss_dssp HHHHHHHHHC---------CHHHHHHHHTC----CHHHHHHHHHHHHHTTSBC------------CCBCHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEeeCC-CCCCeeEEEECHHHHHHH
Confidence 34455566542 36899999999999 99999999999999999965321 22 2467787776554
No 431
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=91.90 E-value=0.17 Score=38.09 Aligned_cols=51 Identities=14% Similarity=0.147 Sum_probs=43.7
Q ss_pred HHHHHhChhHHHHhC-CCCCHHHHHHHh-----CcCCCCCcchHHHHHHHHhcCCceeccc
Q 024046 42 QAAIQLGVFEIIAKA-GELSAPEIAAQL-----QAQNVKAPMMLDRMLRLLVSHRVLECSV 96 (273)
Q Consensus 42 ~~a~elglfd~L~~~-g~~t~~eLA~~~-----g~~~~~~~~~l~rlL~~L~~~gll~~~~ 96 (273)
.+.-+.-|++.|.+. ++.|++||.+.+ ++ +..-+.|.|+.|+..|++.+..
T Consensus 9 ~T~qR~~Il~~l~~~~~~~sa~ei~~~l~~~~~~i----s~~TVYR~L~~L~e~Glv~~~~ 65 (131)
T 2o03_A 9 STRQRAAISTLLETLDDFRSAQELHDELRRRGENI----GLTTVYRTLQSMASSGLVDTLH 65 (131)
T ss_dssp HHHHHHHHHHHHHHCCSCEEHHHHHHHHHHTTCCC----CHHHHHHHHHHHHTTTSEEEEE
T ss_pred CCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC----CHhhHHHHHHHHHHCCCEEEEE
Confidence 356677889999765 389999999999 66 8999999999999999999754
No 432
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=91.82 E-value=0.25 Score=37.94 Aligned_cols=60 Identities=12% Similarity=0.188 Sum_probs=46.3
Q ss_pred HHHHhChhHHHHhC-CCCCHHHHHHHh-----CcCCCCCcchHHHHHHHHhcCCceeccccC-CCcceecC
Q 024046 43 AAIQLGVFEIIAKA-GELSAPEIAAQL-----QAQNVKAPMMLDRMLRLLVSHRVLECSVSG-GERLYALN 106 (273)
Q Consensus 43 ~a~elglfd~L~~~-g~~t~~eLA~~~-----g~~~~~~~~~l~rlL~~L~~~gll~~~~~~-~~~~y~lt 106 (273)
+..+.-|++.|... ++.|++||.+.+ ++ +..-+.|.|+.|+..|++.+.... +..+|.++
T Consensus 21 T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~i----s~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~~ 87 (145)
T 2fe3_A 21 TPQRHAILEYLVNSMAHPTADDIYKALEGKFPNM----SVATVYNNLRVFRESGLVKELTYGDASSRFDFV 87 (145)
T ss_dssp CHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTC----CHHHHHHHHHHHHHTTSEEEECCTTSCCEEEEC
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC----ChhhHHHHHHHHHHCCCEEEEeeCCCceEEECC
Confidence 44566689999764 499999999999 56 889999999999999999975321 12357654
No 433
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=91.76 E-value=0.17 Score=40.81 Aligned_cols=40 Identities=28% Similarity=0.222 Sum_probs=34.9
Q ss_pred HHHhCC-CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecc
Q 024046 52 IIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (273)
Q Consensus 52 ~L~~~g-~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~ 95 (273)
.+.+.| |.|..|||+.+|+ +...+.+.|+.|...|++...
T Consensus 17 ~~~~~g~~~s~~eia~~lgl----~~~tv~~~l~~Le~~G~i~~~ 57 (196)
T 3k2z_A 17 FIEKNGYPPSVREIARRFRI----TPRGALLHLIALEKKGYIERK 57 (196)
T ss_dssp HHHHHSSCCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEECC
T ss_pred HHHHhCCCCCHHHHHHHcCC----CcHHHHHHHHHHHHCCCEEec
Confidence 344446 8999999999999 888999999999999999973
No 434
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=91.60 E-value=0.16 Score=34.53 Aligned_cols=53 Identities=11% Similarity=0.064 Sum_probs=40.6
Q ss_pred hhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecC
Q 024046 49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALN 106 (273)
Q Consensus 49 lfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt 106 (273)
.++.|.+.+..|+.+||+++|+ +...+.|+|.-|...|.+....+ .+-.|..+
T Consensus 20 ~i~~L~~~~~~Ta~~IAkkLg~----sK~~vNr~LY~L~kkG~V~~~~~-~PP~W~~~ 72 (75)
T 1sfu_A 20 EVLSLNTNDYTTAISLSNRLKI----NKKKINQQLYKLQKEDTVKMVPS-NPPKWFKN 72 (75)
T ss_dssp HHHTSCTTCEECHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEECC-SSCEEEEC
T ss_pred HHHhCCCCcchHHHHHHHHHCC----CHHHHHHHHHHHHHCCCEecCCC-CCCCccCC
Confidence 3446666335999999999999 99999999999999999986431 33345444
No 435
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=91.12 E-value=0.43 Score=39.78 Aligned_cols=54 Identities=7% Similarity=0.093 Sum_probs=44.9
Q ss_pred HhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecCh
Q 024046 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP 107 (273)
Q Consensus 46 elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~ 107 (273)
+.-|.-.|.. |+.|+++||+.+|+ +++-+...|.-|...|+++. ..+++..+..
T Consensus 167 ~~~l~~~l~~-~~~t~~~la~~~~l----~~~~V~~~l~~L~~~~~v~~---~~~~~~~~~~ 220 (232)
T 2qlz_A 167 LAILHYLLLN-GRATVEELSDRLNL----KEREVREKISEMARFVPVKI---INDNTVVLDE 220 (232)
T ss_dssp HHHHHHHHHS-SEEEHHHHHHHHTC----CHHHHHHHHHHHTTTSCEEE---ETTTEEEECH
T ss_pred HHHHHHHHhc-CCCCHHHHHHHhCc----CHHHHHHHHHHHHhcCCeEE---ecCCeEEecH
Confidence 3446666765 79999999999999 99999999999999999976 3667776655
No 436
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=91.00 E-value=0.17 Score=35.87 Aligned_cols=45 Identities=18% Similarity=0.349 Sum_probs=39.5
Q ss_pred HhChhHHHHhCC--CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceec
Q 024046 46 QLGVFEIIAKAG--ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (273)
Q Consensus 46 elglfd~L~~~g--~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~ 94 (273)
++.|+..|.+.| .++..|||+.+++ +..-+.++|+.|...|++.+
T Consensus 22 q~~Vl~~I~~~g~~gi~qkeLa~~~~l----~~~tvt~iLk~LE~kglIkr 68 (91)
T 2dk5_A 22 EKLVYQIIEDAGNKGIWSRDVRYKSNL----PLTEINKILKNLESKKLIKA 68 (91)
T ss_dssp HHHHHHHHHHHCTTCEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHcCCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEE
Confidence 445777787644 8999999999999 99999999999999999984
No 437
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=90.95 E-value=0.6 Score=34.34 Aligned_cols=71 Identities=11% Similarity=0.173 Sum_probs=54.2
Q ss_pred HHHHHHHHHhChhHHHHhCCCCCHHHHHHHh--------CcCCCCCcchHHHHHHHHhcCCceecccc---C--CCccee
Q 024046 38 PMATQAAIQLGVFEIIAKAGELSAPEIAAQL--------QAQNVKAPMMLDRMLRLLVSHRVLECSVS---G--GERLYA 104 (273)
Q Consensus 38 ~~aL~~a~elglfd~L~~~g~~t~~eLA~~~--------g~~~~~~~~~l~rlL~~L~~~gll~~~~~---~--~~~~y~ 104 (273)
.+.+.-.+++=|+..|.+ +|.+--+|.+.+ ++ ++..+.+.|+-|...|+++.... . ....|+
T Consensus 6 ~~~~~g~l~~~IL~~L~~-~~~~Gyei~~~l~~~~~~~~~i----~~gtly~~L~rLe~~GlI~~~~~~~~~~~~rk~Y~ 80 (116)
T 3f8b_A 6 KEMLRAQTNVILLNVLKQ-GDNYVYGIIKQVKEASNGEMEL----NEATLYTIFKRLEKDGIISSYWGDESQGGRRKYYR 80 (116)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCBCHHHHHHHHHHHTTTCCCC----CHHHHHHHHHHHHHTTSEEEEEEC----CCEEEEE
T ss_pred HHHHhchHHHHHHHHHHh-CCCCHHHHHHHHHHHhCCCCCC----CcchHHHHHHHHHHCCCEEEEeeccCCCCCceEEE
Confidence 345555567777788887 799999999988 56 89999999999999999986421 0 113599
Q ss_pred cChhchHhh
Q 024046 105 LNPVSKYFV 113 (273)
Q Consensus 105 lt~~s~~l~ 113 (273)
+|+.++..+
T Consensus 81 LT~~G~~~l 89 (116)
T 3f8b_A 81 LTEIGHENM 89 (116)
T ss_dssp ECHHHHHHH
T ss_pred ECHHHHHHH
Confidence 999987654
No 438
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=90.73 E-value=0.26 Score=35.75 Aligned_cols=66 Identities=15% Similarity=0.198 Sum_probs=50.4
Q ss_pred HHHHhChhHHHHhCCCCCHHHHHHHh----CcCCCCCcchHHHHHHHHhcCCceeccccCCC----cceecChhchHhh
Q 024046 43 AAIQLGVFEIIAKAGELSAPEIAAQL----QAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE----RLYALNPVSKYFV 113 (273)
Q Consensus 43 ~a~elglfd~L~~~g~~t~~eLA~~~----g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~----~~y~lt~~s~~l~ 113 (273)
-.+++-|+..|.. +|.+.-+|++.+ ++ ++..+.++|+-|...|+++......+ ..|++|+.++..+
T Consensus 8 g~l~~~IL~~L~~-~~~~gyel~~~l~~~~~i----~~~tly~~L~~Le~~GlI~~~~~~~~~r~r~~y~LT~~G~~~l 81 (108)
T 3l7w_A 8 LLIEYLILAIVSK-HDSYGYDISQTIKLIASI----KESTLYPILKKLEKAGYLSTYTQEHQGRRRKYYHLTDSGEKHL 81 (108)
T ss_dssp HHHHHHHHHHHHH-SCEEHHHHHHHHTTTCCC----CHHHHHHHHHHHHHTTSEEEEEEEETTEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCCcHHHHHHHHHHHhCC----CcChHHHHHHHHHHCCCeEEEeecCCCCcceEEEECHHHHHHH
Confidence 3456667778877 799988888885 67 99999999999999999986421112 2589999887654
No 439
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=90.59 E-value=0.85 Score=33.55 Aligned_cols=71 Identities=15% Similarity=0.118 Sum_probs=54.1
Q ss_pred HHHHHHHHHhChhHHHHhCCCCCHHHHHHHh------CcCCCCCcchHHHHHHHHhcCCceeccccC-CC----cceecC
Q 024046 38 PMATQAAIQLGVFEIIAKAGELSAPEIAAQL------QAQNVKAPMMLDRMLRLLVSHRVLECSVSG-GE----RLYALN 106 (273)
Q Consensus 38 ~~aL~~a~elglfd~L~~~g~~t~~eLA~~~------g~~~~~~~~~l~rlL~~L~~~gll~~~~~~-~~----~~y~lt 106 (273)
++.+.-.+++=|+..|.+ +|.+--+|++.+ ++ ++..+...|+-|...|+++..... .. ..|++|
T Consensus 7 ~~l~~g~l~~~IL~lL~~-~p~~Gyei~~~l~~~g~~~i----s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~lT 81 (116)
T 3hhh_A 7 TELLKGILEGLVLAIIQR-KETYGYEITKILNDQGFTEI----VEGTVYTILLRLEKNQWVIAEKKPSEKGPMRKFYRLT 81 (116)
T ss_dssp HHHHTTHHHHHHHHHHHH-SCBCHHHHHHHHHTTSCSSC----CHHHHHHHHHHHHHTTSEEEEEEECC--CEEEEEEEC
T ss_pred HHHHhhhHHHHHHHHHhc-CCCCHHHHHHHHHHcCCCCC----CccHHHHHHHHHHHCCCEEEEeeecCCCCCceEEEEC
Confidence 445555566667778887 799999999998 56 899999999999999999864210 11 259999
Q ss_pred hhchHhh
Q 024046 107 PVSKYFV 113 (273)
Q Consensus 107 ~~s~~l~ 113 (273)
+.++..+
T Consensus 82 ~~G~~~l 88 (116)
T 3hhh_A 82 SSGEAEL 88 (116)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987654
No 440
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=90.41 E-value=0.3 Score=39.10 Aligned_cols=58 Identities=16% Similarity=0.192 Sum_probs=46.4
Q ss_pred HHHHhChhHHHHhC-CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCc-eeccccCCCcceecChh
Q 024046 43 AAIQLGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRV-LECSVSGGERLYALNPV 108 (273)
Q Consensus 43 ~a~elglfd~L~~~-g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gl-l~~~~~~~~~~y~lt~~ 108 (273)
.-....|++.|.+. ++.|+.|||+.+|+ +.+.+.|-++.|...|+ +.. ..+.|.+++.
T Consensus 20 ~~R~~~Il~~L~~~~~~~s~~eLa~~l~v----S~~Ti~rdi~~L~~~G~~I~~----~~~Gy~l~~~ 79 (187)
T 1j5y_A 20 QERLKSIVRILERSKEPVSGAQLAEELSV----SRQVIVQDIAYLRSLGYNIVA----TPRGYVLAGG 79 (187)
T ss_dssp HHHHHHHHHHHHHCSSCBCHHHHHHHHTS----CHHHHHHHHHHHHHHTCCCEE----ETTEEECCTT
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE----ECCEEEECCc
Confidence 34566788999864 47999999999999 99999999999999999 764 2345766653
No 441
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=90.40 E-value=0.27 Score=37.21 Aligned_cols=51 Identities=12% Similarity=0.107 Sum_probs=41.6
Q ss_pred HHhChhHHHHh-CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecc
Q 024046 45 IQLGVFEIIAK-AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (273)
Q Consensus 45 ~elglfd~L~~-~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~ 95 (273)
.+..|+..|.. .++.|..||++.++...+.++..+.++|+-|...|++.+.
T Consensus 10 ~e~~vL~~L~~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~r~ 61 (138)
T 2g9w_A 10 LERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMAVLQRLAKKNLVLQI 61 (138)
T ss_dssp HHHHHHHHHHTCSSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHhccCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 46677888877 4799999999999821111899999999999999999974
No 442
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} PDB: 2l4m_A
Probab=90.39 E-value=0.3 Score=32.40 Aligned_cols=46 Identities=20% Similarity=0.275 Sum_probs=40.4
Q ss_pred HhChhHHHHhCCCCCHHHHHHHhCcCCCCCcch-HHHHHHHHhcCCceecc
Q 024046 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMM-LDRMLRLLVSHRVLECS 95 (273)
Q Consensus 46 elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~-l~rlL~~L~~~gll~~~ 95 (273)
+-.|++.|...||-++=.||+.+|+ .... +.+.|..|...|++..+
T Consensus 12 ee~I~~fL~~~Gp~~AL~IAK~LGl----ktAK~VNp~LY~m~~~~lL~~D 58 (72)
T 3eyi_A 12 EEDIYRFLKDNGPQRALVIAQALGM----RTAKDVNRDLYRMKSRHLLDMD 58 (72)
T ss_dssp HHHHHHHHHHHCSEEHHHHHHHTTC----CSGGGTHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHHcCCchHHHHHHHhCc----chhhhcCHHHHHHHHccCcCCC
Confidence 5568899999999999999999999 5554 99999999999999764
No 443
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=90.27 E-value=0.26 Score=36.99 Aligned_cols=33 Identities=15% Similarity=0.216 Sum_probs=31.5
Q ss_pred CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceec
Q 024046 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (273)
Q Consensus 58 ~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~ 94 (273)
..|.++||+.+|+ ++..+.+.++.|...|++..
T Consensus 51 ~ps~~~LA~~l~~----s~~~V~~~l~~Le~kGlI~~ 83 (128)
T 2vn2_A 51 FPTPAELAERMTV----SAAECMEMVRRLLQKGMIAI 83 (128)
T ss_dssp SCCHHHHHHTSSS----CHHHHHHHHHHHHHTTSSEE
T ss_pred CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEE
Confidence 4799999999999 99999999999999999997
No 444
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=90.21 E-value=0.16 Score=37.53 Aligned_cols=51 Identities=18% Similarity=0.239 Sum_probs=41.9
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecc
Q 024046 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (273)
Q Consensus 45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~ 95 (273)
.+..|+..|.+.||.|..|||+.++...+.++..+.++|+-|...|++.+.
T Consensus 11 ~q~~vL~~L~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~ 61 (126)
T 1sd4_A 11 AEWDVMNIIWDKKSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRY 61 (126)
T ss_dssp HHHHHHHHHHHSSSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEE
Confidence 456677888877899999999999741122788999999999999999974
No 445
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=89.91 E-value=0.3 Score=37.63 Aligned_cols=68 Identities=10% Similarity=0.178 Sum_probs=52.4
Q ss_pred HHHHHHhChhHHHHhCCCCCHHHHHHHh--------CcCCCCCcchHHHHHHHHhcCCceeccccC-----CCcceecCh
Q 024046 41 TQAAIQLGVFEIIAKAGELSAPEIAAQL--------QAQNVKAPMMLDRMLRLLVSHRVLECSVSG-----GERLYALNP 107 (273)
Q Consensus 41 L~~a~elglfd~L~~~g~~t~~eLA~~~--------g~~~~~~~~~l~rlL~~L~~~gll~~~~~~-----~~~~y~lt~ 107 (273)
+.-..++-|+..|.. +|.+.-+|++.+ ++ ++..+.+.|+-|...|+|+..... ..-.|.+|+
T Consensus 38 ~~g~~~~~IL~~L~~-~~~~gyeI~~~l~~~~~~~~~i----s~gtLy~~L~rLE~~GlI~~~~~~~~~~~~rk~Y~LT~ 112 (145)
T 1xma_A 38 IRGYVDTIILSLLIE-GDSYGYEISKNIRIKTDELYVI----KETTLYSAFARLEKNGYIKSYYGEETQGKRRTYYRITP 112 (145)
T ss_dssp GGGTHHHHHHHHHHH-CCEEHHHHHHHHHHHHTTSCCC----CHHHHHHHHHHHHHTTSEEEEEEEEC--CEEEEEEECH
T ss_pred hcCcHHHHHHHHHHh-CCCCHHHHHHHHHHhhCCccCc----ChhHHHHHHHHHHHCCCEEEEEeccCCCCCeEEEEECH
Confidence 344566777788876 799999999988 47 999999999999999999864211 113699999
Q ss_pred hchHhh
Q 024046 108 VSKYFV 113 (273)
Q Consensus 108 ~s~~l~ 113 (273)
.++.++
T Consensus 113 ~G~~~l 118 (145)
T 1xma_A 113 EGIKYY 118 (145)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887654
No 446
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=89.80 E-value=0.29 Score=40.56 Aligned_cols=47 Identities=15% Similarity=0.246 Sum_probs=41.1
Q ss_pred CHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhchHhh
Q 024046 60 SAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFV 113 (273)
Q Consensus 60 t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~~l~ 113 (273)
+..+||+.+++ ++..+.++++-|...|++++. .+..+.+|+.+..+.
T Consensus 26 ~~~~La~~l~v----s~~tvs~~l~~Le~~GlV~r~---~~~~v~LT~~G~~~~ 72 (230)
T 1fx7_A 26 LRARIAERLDQ----SGPTVSQTVSRMERDGLLRVA---GDRHLELTEKGRALA 72 (230)
T ss_dssp CHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC---TTSCEEECHHHHHHH
T ss_pred cHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe---CCccEEECHHHHHHH
Confidence 44999999999 999999999999999999983 446789999987654
No 447
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=89.67 E-value=0.32 Score=41.04 Aligned_cols=65 Identities=12% Similarity=0.113 Sum_probs=50.9
Q ss_pred HHhChhHHHHhCC--CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCC---cceecChhchHhh
Q 024046 45 IQLGVFEIIAKAG--ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV 113 (273)
Q Consensus 45 ~elglfd~L~~~g--~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---~~y~lt~~s~~l~ 113 (273)
.+..++..|...+ +.|..|||+.+++ ++..+.++++-|...|++++.....+ -...+|+.+..+.
T Consensus 159 ~q~~vL~~L~~~~~~~~t~~eLa~~l~i----~~~tvt~~v~rLe~~GlV~R~~~~~DrR~~~i~LT~~G~~~~ 228 (250)
T 1p4x_A 159 VEFTILAIITSQNKNIVLLKDLIETIHH----KYPQTVRALNNLKKQGYLIKERSTEDERKILIHMDDAQQDHA 228 (250)
T ss_dssp HHHHHHHHHHTTTTCCEEHHHHHHHSSS----CHHHHHHHHHHHHHHTSSEEEECSSSTTCEEEECCHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEeeCCCCCCCeEEEEECHHHHHHH
Confidence 4555778887654 4899999999999 99999999999999999997532122 2577888876654
No 448
>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52
Probab=89.67 E-value=1.6 Score=39.27 Aligned_cols=69 Identities=19% Similarity=0.347 Sum_probs=40.9
Q ss_pred CCCcceEEEecCCccHHHHHHHHH---C----CCCeEEEeechHHHHhCC-----CCCCceEEEcccCCCCCCCCEEEec
Q 024046 195 FQNVERLVDVGGGFGVTLSMITSK---Y----PQIKAVNFDLPHVVQDAP-----SYAGVEHVGGNMFESVPEGDAILMK 262 (273)
Q Consensus 195 ~~~~~~vvDVGGG~G~~~~~l~~~---~----P~l~~~~~Dlp~v~~~a~-----~~~ri~~~~gD~f~~~p~~D~~~l~ 262 (273)
.+..-.||++|+|+|.++..+++. + ..++.+++|....+...+ ..++|+.. |-+.++|.+.++++.
T Consensus 78 ~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~~~~v~W~--~~l~~lp~~~~~viA 155 (387)
T 1zkd_A 78 EPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGIRNIHWH--DSFEDVPEGPAVILA 155 (387)
T ss_dssp CCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTCSSEEEE--SSGGGSCCSSEEEEE
T ss_pred CCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcCCCCeEEe--CChhhcCCCCeEEEe
Confidence 344568999999999999988765 2 356789999833332211 12344432 333345555555555
Q ss_pred ccc
Q 024046 263 VGN 265 (273)
Q Consensus 263 ~vL 265 (273)
|=+
T Consensus 156 NE~ 158 (387)
T 1zkd_A 156 NEY 158 (387)
T ss_dssp ESS
T ss_pred ccc
Confidence 433
No 449
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=89.52 E-value=0.19 Score=36.00 Aligned_cols=53 Identities=21% Similarity=0.231 Sum_probs=40.9
Q ss_pred HHHHHHHHhChhH-HHHhCCCC-CHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecc
Q 024046 39 MATQAAIQLGVFE-IIAKAGEL-SAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (273)
Q Consensus 39 ~aL~~a~elglfd-~L~~~g~~-t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~ 95 (273)
..++..++..|.+ .+.....+ |..+||+.+|+ +...+++.|+.|...|+++..
T Consensus 14 ~~l~~~i~~~I~~~~l~~g~~lps~~eLa~~~~v----Sr~tvr~al~~L~~~Gli~~~ 68 (102)
T 1v4r_A 14 ADVATHFRTLIKSGELAPGDTLPSVADIRAQFGV----AAKTVSRALAVLKSEGLVSSR 68 (102)
T ss_dssp HHHHHHHHHHTTTTSCCTTSBCCCHHHHHHHSSS----CTTHHHHHTTTTTTSSCCEEE
T ss_pred HHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence 3445555666665 34442255 99999999999 999999999999999999864
No 450
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=89.36 E-value=0.37 Score=37.08 Aligned_cols=45 Identities=11% Similarity=0.109 Sum_probs=40.8
Q ss_pred HhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecc
Q 024046 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (273)
Q Consensus 46 elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~ 95 (273)
+-.|.+.|. .|+.|+.+||+.+|+ +-....-.|..|.-.|++.+.
T Consensus 13 k~~ILE~Lk-~G~~~t~~Iak~LGl----Shg~aq~~Ly~LeREG~V~~V 57 (165)
T 2vxz_A 13 LRDILALLA-DGCKTTSLIQQRLGL----SHGRAKALIYVLEKEGRVTRV 57 (165)
T ss_dssp HHHHHHHHT-TCCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSCEEE
T ss_pred HHHHHHHHH-hCCccHHHHHHHhCC----cHHHHHHHHHHHHhcCceEEE
Confidence 345788898 599999999999999 999999999999999999985
No 451
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=89.36 E-value=0.37 Score=35.59 Aligned_cols=71 Identities=14% Similarity=0.212 Sum_probs=54.9
Q ss_pred HHHHHHHHHhChhHHHHhCCCCCHHHHHHHhC------cCCCCCcchHHHHHHHHhcCCceecccc---CCC--cceecC
Q 024046 38 PMATQAAIQLGVFEIIAKAGELSAPEIAAQLQ------AQNVKAPMMLDRMLRLLVSHRVLECSVS---GGE--RLYALN 106 (273)
Q Consensus 38 ~~aL~~a~elglfd~L~~~g~~t~~eLA~~~g------~~~~~~~~~l~rlL~~L~~~gll~~~~~---~~~--~~y~lt 106 (273)
.+.+.-.+++-|+..|.. +|.+.-+|++.+. + ++..+.+.|+-|...|+++.... .++ ..|++|
T Consensus 8 ~~l~~g~l~~~IL~lL~~-~p~~gyel~~~l~~~~~~~i----~~gtly~~L~~Le~~GlI~~~~~~~~~~~~rk~Y~lT 82 (117)
T 3elk_A 8 ERILHGLITLYILKELVK-RPMHGYELQKSMFETTGQAL----PQGSIYILLKTMKERGFVISESSVNEKGQQLTVYHIT 82 (117)
T ss_dssp CHHHHHHHHHHHHHHHHH-SCEEHHHHHHHHHHHHSCCC----CTTHHHHHHHHHHHHTSEEEEEEEC-CCCEEEEEEEC
T ss_pred HHHHhhHHHHHHHHHHHc-CCCCHHHHHHHHHHHhCCCC----CcchHHHHHHHHHHCCCEEEEeeecCCCCCceEEEEC
Confidence 345555667778888887 7999999999987 6 88999999999999999986421 011 269999
Q ss_pred hhchHhh
Q 024046 107 PVSKYFV 113 (273)
Q Consensus 107 ~~s~~l~ 113 (273)
+.++..+
T Consensus 83 ~~G~~~l 89 (117)
T 3elk_A 83 DAGKKFL 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9997654
No 452
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=89.31 E-value=0.7 Score=38.10 Aligned_cols=50 Identities=10% Similarity=0.214 Sum_probs=42.5
Q ss_pred CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhchHhhc
Q 024046 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVS 114 (273)
Q Consensus 58 ~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~~l~~ 114 (273)
+.+..+||+.+++ ++..+.++++-|...|++++. ....+.+|+.++.+..
T Consensus 24 ~~~~~~la~~l~v----s~~tvs~~l~~Le~~GlV~r~---~~~~v~LT~~G~~~~~ 73 (226)
T 2qq9_A 24 TPLRARIAERLEQ----SGPTVSQTVARMERDGLVVVA---SDRSLQMTPTGRTLAT 73 (226)
T ss_dssp CCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC---TTSBEEECHHHHHHHH
T ss_pred CccHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe---CCCCeEECHHHHHHHH
Confidence 3456999999999 999999999999999999983 4567999999876543
No 453
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=89.25 E-value=0.58 Score=37.10 Aligned_cols=63 Identities=10% Similarity=0.296 Sum_probs=49.0
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHh--------CcCCCCCcchHHHHHHHHhcCCceeccccC-----CCcceecChhchH
Q 024046 45 IQLGVFEIIAKAGELSAPEIAAQL--------QAQNVKAPMMLDRMLRLLVSHRVLECSVSG-----GERLYALNPVSKY 111 (273)
Q Consensus 45 ~elglfd~L~~~g~~t~~eLA~~~--------g~~~~~~~~~l~rlL~~L~~~gll~~~~~~-----~~~~y~lt~~s~~ 111 (273)
+++-|+..|.. ||.+.-||++.+ ++ ++..+.+.|+-|...|+++..... ....|++|+.++.
T Consensus 3 l~~~iL~lL~~-~~~~gyel~~~l~~~~~~~~~~----s~~~ly~~L~~Le~~GlI~~~~~~~~~~~~r~~Y~lT~~G~~ 77 (179)
T 1yg2_A 3 LPHVILTVLST-RDATGYDITKEFSASIGYFWKA----SHQQVYRELNKMGEQGLVTCVLEPQEGKPDRKVYSITQAGRS 77 (179)
T ss_dssp HHHHHHHHHHH-CCBCHHHHHHHHTTGGGGTCCC----CHHHHHHHHHHHHHTTSEEECCC---------CEEECHHHHH
T ss_pred hHHHHHHHHhc-CCCCHHHHHHHHHHHhCCccCC----CcCcHHHHHHHHHHCCCeEEEeecCCCCCCceEEEeChHHHH
Confidence 45567778887 799999999999 46 899999999999999999863211 1136999999874
Q ss_pred h
Q 024046 112 F 112 (273)
Q Consensus 112 l 112 (273)
.
T Consensus 78 ~ 78 (179)
T 1yg2_A 78 A 78 (179)
T ss_dssp H
T ss_pred H
Confidence 3
No 454
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=89.09 E-value=0.47 Score=36.08 Aligned_cols=66 Identities=17% Similarity=0.163 Sum_probs=48.1
Q ss_pred HHHHHhChhHHHHhC-CCCCHHHHHHHhCcC-CCCCcchHHHHHHHHhcCCceecccc-CCCcceecCh
Q 024046 42 QAAIQLGVFEIIAKA-GELSAPEIAAQLQAQ-NVKAPMMLDRMLRLLVSHRVLECSVS-GGERLYALNP 107 (273)
Q Consensus 42 ~~a~elglfd~L~~~-g~~t~~eLA~~~g~~-~~~~~~~l~rlL~~L~~~gll~~~~~-~~~~~y~lt~ 107 (273)
.+.-+.-|++.|.+. ++.|++||.+.+.-. +.++..-+.|.|+.|+..|++.+... .+..+|.++.
T Consensus 12 ~T~qR~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~g~~~Y~~~~ 80 (139)
T 3mwm_A 12 ATRQRAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDVLRTAEGESVYRRCS 80 (139)
T ss_dssp HHHHHHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEEEECTTSCEEEECCS
T ss_pred cCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEEEcCCCceEEEECC
Confidence 355677789999775 499999999988321 12288899999999999999997532 1224676543
No 455
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=89.02 E-value=0.34 Score=30.84 Aligned_cols=45 Identities=11% Similarity=0.195 Sum_probs=40.0
Q ss_pred HhChhHHHHhCC-CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceec
Q 024046 46 QLGVFEIIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (273)
Q Consensus 46 elglfd~L~~~g-~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~ 94 (273)
|-.|++.|..+| -+.++..|+..|+ +.+.+..+|+-|...|++..
T Consensus 12 e~~lL~yIr~sGGildI~~~a~kygV----~kdeV~~~LrrLe~KGLI~l 57 (59)
T 2xvc_A 12 ERELLDYIVNNGGFLDIEHFSKVYGV----EKQEVVKLLEALKNKGLIAV 57 (59)
T ss_dssp HHHHHHHHHHTTSEEEHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHcCCEEeHHHHHHHhCC----CHHHHHHHHHHHHHCCCeec
Confidence 445788888876 7899999999999 99999999999999999874
No 456
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=88.90 E-value=0.52 Score=36.33 Aligned_cols=60 Identities=17% Similarity=0.268 Sum_probs=47.1
Q ss_pred HHHHhChhHHHHhC-CCCCHHHHHHHh-----CcCCCCCcchHHHHHHHHhcCCceecccc-CCCcceecC
Q 024046 43 AAIQLGVFEIIAKA-GELSAPEIAAQL-----QAQNVKAPMMLDRMLRLLVSHRVLECSVS-GGERLYALN 106 (273)
Q Consensus 43 ~a~elglfd~L~~~-g~~t~~eLA~~~-----g~~~~~~~~~l~rlL~~L~~~gll~~~~~-~~~~~y~lt 106 (273)
+.-+.-|++.|... ++.|++||.+.+ ++ +..-+.|.|+.|+..|++.+... .+..+|..+
T Consensus 26 T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~i----s~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~~ 92 (150)
T 2xig_A 26 SKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNT----SISSVYRILNFLEKENFISVLETSKSGRRYEIA 92 (150)
T ss_dssp HHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTC----CHHHHHHHHHHHHHTTSEEEEEETTTEEEEEES
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC----CHhhHHHHHHHHHHCCcEEEEEeCCCceEEEec
Confidence 56777789999875 499999999998 56 88999999999999999997532 112356653
No 457
>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*
Probab=88.36 E-value=0.49 Score=40.89 Aligned_cols=44 Identities=16% Similarity=0.219 Sum_probs=34.0
Q ss_pred HHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec
Q 024046 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL 229 (273)
Q Consensus 185 ~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl 229 (273)
...+.+. ..+.+..++||+||+.|.++-.++++.+-..++++|+
T Consensus 70 L~ei~ek-~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdl 113 (300)
T 3eld_A 70 IRWLHER-GYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTL 113 (300)
T ss_dssp HHHHHHH-TSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECC
T ss_pred HHHHHHh-CCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEe
Confidence 3344444 4466789999999999999999998877656677777
No 458
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=88.35 E-value=0.51 Score=35.70 Aligned_cols=60 Identities=15% Similarity=0.275 Sum_probs=46.0
Q ss_pred HHHHhChhHHHHhC--CCCCHHHHHHHh-----CcCCCCCcchHHHHHHHHhcCCceecccc-CCCcceecC
Q 024046 43 AAIQLGVFEIIAKA--GELSAPEIAAQL-----QAQNVKAPMMLDRMLRLLVSHRVLECSVS-GGERLYALN 106 (273)
Q Consensus 43 ~a~elglfd~L~~~--g~~t~~eLA~~~-----g~~~~~~~~~l~rlL~~L~~~gll~~~~~-~~~~~y~lt 106 (273)
+..+.-|++.|.+. ++.|++||.+.+ ++ +..-+.|.|+.|+..|++.+... .+..+|.++
T Consensus 17 T~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~i----s~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~~ 84 (136)
T 1mzb_A 17 TLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDV----GLATVYRVLTQFEAAGLVVRHNFDGGHAVFELA 84 (136)
T ss_dssp CHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCC----CHHHHHHHHHHHHHHTSEEEECSSSSSCEEEES
T ss_pred CHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCC----CHHHHHHHHHHHHHCCcEEEEEeCCCceEEEeC
Confidence 34566688899764 489999999999 56 88999999999999999997532 122457653
No 459
>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}
Probab=88.33 E-value=1.6 Score=37.47 Aligned_cols=34 Identities=15% Similarity=-0.006 Sum_probs=27.8
Q ss_pred CCcceEEEecCCccHHHHHHHHHC-----CCCeEEEeec
Q 024046 196 QNVERLVDVGGGFGVTLSMITSKY-----PQIKAVNFDL 229 (273)
Q Consensus 196 ~~~~~vvDVGGG~G~~~~~l~~~~-----P~l~~~~~Dl 229 (273)
..+..||++|...|..++.+++.. |+-+++++|.
T Consensus 105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~Dt 143 (282)
T 2wk1_A 105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADS 143 (282)
T ss_dssp TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEEC
T ss_pred CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEEC
Confidence 457899999999999888776654 5788999994
No 460
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=88.26 E-value=0.43 Score=41.72 Aligned_cols=56 Identities=16% Similarity=0.214 Sum_probs=44.9
Q ss_pred HhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecCh
Q 024046 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP 107 (273)
Q Consensus 46 elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~ 107 (273)
+..|++.|.+.++.|.++||+.+|+ +++.++|-++.|...|++.+.. ....|++.+
T Consensus 7 ~~~Il~~L~~~~~~s~~eLa~~l~v----S~~ti~r~l~~L~~~G~~i~~~--~g~GY~l~~ 62 (321)
T 1bia_A 7 PLKLIALLANGEFHSGEQLGETLGM----SRAAINKHIQTLRDWGVDVFTV--PGKGYSLPE 62 (321)
T ss_dssp HHHHHHHHTTSSCBCHHHHHHHHTS----CHHHHHHHHHHHHHTTCCCEEE--TTTEEECSS
T ss_pred HHHHHHHHHcCCCcCHHHHHHHHCC----CHHHHHHHHHHHHhCCCcEEEe--cCCCcEEee
Confidence 4457888877568999999999999 9999999999999999986431 233577754
No 461
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=88.04 E-value=1.1 Score=28.54 Aligned_cols=43 Identities=26% Similarity=0.237 Sum_probs=38.7
Q ss_pred CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChh
Q 024046 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPV 108 (273)
Q Consensus 58 ~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~ 108 (273)
++|+.|+|...|+ +-...+.-|+.|...|-+.+ +..+|++.|-
T Consensus 18 GMTaGEVAA~f~w----~Le~ar~aLeqLf~~G~LRK----RsSRYrlkph 60 (68)
T 3i71_A 18 GMTAGEVAAHFGW----PLEKARNALEQLFSAGTLRK----RSSRYRLKPH 60 (68)
T ss_dssp CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE----ECCEEEECC-
T ss_pred cccHHHHHHHhCC----cHHHHHHHHHHHHhcchhhh----hccccccCcc
Confidence 8999999999999 99999999999999999995 6788988763
No 462
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=87.95 E-value=0.31 Score=43.48 Aligned_cols=69 Identities=13% Similarity=0.249 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecccc-----C-CCcceecChhch
Q 024046 37 LPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVS-----G-GERLYALNPVSK 110 (273)
Q Consensus 37 ~~~aL~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~-----~-~~~~y~lt~~s~ 110 (273)
...+++...+..|++.|. .|+.|..|||+.+|+ ++..+.++++-|...|++.+... . ....|++++...
T Consensus 13 ~~~~~~~~~~~~il~~l~-~~~~sr~~la~~~gl----s~~tv~~~v~~L~~~gli~~~~~~~~~~GR~~~~l~~~~~~~ 87 (380)
T 2hoe_A 13 MPKSVRAENISRILKRIM-KSPVSRVELAEELGL----TKTTVGEIAKIFLEKGIVVEEKDSPKGVGRPTKSLKISPNCA 87 (380)
T ss_dssp ---------CCCSHHHHH-HSCBCHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEEECCC----CCCEEEEECGGGC
T ss_pred CchhHHHHHHHHHHHHHH-cCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeecCCCCCCCCCceEEEEccCCC
Confidence 456677777888999999 799999999999999 99999999999999999987431 0 112477777654
No 463
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=87.80 E-value=0.1 Score=46.21 Aligned_cols=62 Identities=8% Similarity=0.042 Sum_probs=0.0
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhchHhhc
Q 024046 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVS 114 (273)
Q Consensus 45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~~l~~ 114 (273)
-+..++..|...++.|..|||+.+|+ ++.-++|.|+.|...|+++. ......+|+.++.+..
T Consensus 21 r~~~iL~~l~~~~~~t~~eLa~~l~v----s~~Tv~r~l~~Le~~Glv~~----~~~gi~LT~~G~~~~~ 82 (345)
T 2o0m_A 21 ERFQILRNIYWMQPIGRRSLSETMGI----TERVLRTETDVLKQLNLIEP----SKSGMTLTERGLEVYQ 82 (345)
T ss_dssp ----------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEE----EecceEEcHHHHHHHH
Confidence 35567788877789999999999999 99999999999999999974 2233667877765553
No 464
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=87.38 E-value=0.77 Score=33.05 Aligned_cols=41 Identities=22% Similarity=0.305 Sum_probs=35.1
Q ss_pred HHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhc
Q 024046 43 AAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVS 88 (273)
Q Consensus 43 ~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~ 88 (273)
.+.++||+..|.. |++|-.|||+.+|+ +...+.|+=|.|..
T Consensus 44 l~~R~~l~~~L~~-ge~TQREIA~~lGi----S~stISRi~r~L~~ 84 (101)
T 1jhg_A 44 LGTRVRIIEELLR-GEMSQRELKNELGA----GIATITRGSNSLKA 84 (101)
T ss_dssp HHHHHHHHHHHHH-CCSCHHHHHHHHCC----CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCcCHHHHHHHHCC----ChhhhhHHHHHHHH
Confidence 4567899999987 78999999999999 99999888777653
No 465
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=87.19 E-value=0.6 Score=41.91 Aligned_cols=51 Identities=14% Similarity=0.276 Sum_probs=44.9
Q ss_pred HHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecc
Q 024046 41 TQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (273)
Q Consensus 41 L~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~ 95 (273)
++..-+..|++.|...|+.|..|||+.+|+ +...+.++++-|...|++.+.
T Consensus 13 ~r~~n~~~il~~l~~~~~~sr~~la~~~~l----s~~tv~~~v~~L~~~g~i~~~ 63 (406)
T 1z6r_A 13 IKQTNAGAVYRLIDQLGPVSRIDLSRLAQL----APASITKIVHEMLEAHLVQEL 63 (406)
T ss_dssp HHHHHHHHHHHHHHSSCSCCHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEC
T ss_pred HHHhHHHHHHHHHHHcCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCcEEee
Confidence 444455568999998889999999999999 999999999999999999874
No 466
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=87.14 E-value=0.75 Score=37.40 Aligned_cols=49 Identities=18% Similarity=0.157 Sum_probs=42.4
Q ss_pred CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhchHhh
Q 024046 57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFV 113 (273)
Q Consensus 57 g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~~l~ 113 (273)
+|.+..+||+.+|+ .++.++..++.|...|+++.. . +...+|+.++.+.
T Consensus 29 ~~V~~~~LA~~Lgv----S~~SV~~~lkkL~e~GLV~~~---~-~Gv~LTe~G~~~A 77 (200)
T 2p8t_A 29 EPLGRKQISERLEL----GEGSVRTLLRKLSHLDIIRSK---Q-RGHFLTLKGKEIR 77 (200)
T ss_dssp SCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC------CEEECHHHHHHH
T ss_pred CCccHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEe---C-CCeEECHHHHHHH
Confidence 58999999999999 999999999999999999973 3 7788999987443
No 467
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=86.37 E-value=0.68 Score=41.95 Aligned_cols=51 Identities=16% Similarity=0.331 Sum_probs=45.3
Q ss_pred HHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecc
Q 024046 41 TQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (273)
Q Consensus 41 L~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~ 95 (273)
++..-+..|++.|...|+.|..|||+.+|+ +...+.++++-|...|++.+.
T Consensus 36 ~r~~n~~~il~~l~~~~~~sr~ela~~~gl----s~~tv~~~v~~L~~~gli~~~ 86 (429)
T 1z05_A 36 IKQINAGRVYKLIDQKGPISRIDLSKESEL----APASITKITRELIDAHLIHET 86 (429)
T ss_dssp HHHHHHHHHHHHHHHHCSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHHHHcCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEec
Confidence 445555668899988889999999999999 999999999999999999985
No 468
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11
Probab=85.71 E-value=1.2 Score=37.50 Aligned_cols=50 Identities=20% Similarity=0.216 Sum_probs=38.3
Q ss_pred hHHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCC
Q 024046 184 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAP 237 (273)
Q Consensus 184 ~~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~ 237 (273)
.+..++..+. .....|||..||+|..+.+..+. +-+++++|+ |..++.+.
T Consensus 201 l~~~~i~~~~--~~~~~vlD~f~GsGtt~~~a~~~--gr~~ig~e~~~~~~~~~~ 251 (260)
T 1g60_A 201 LIERIIRASS--NPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQAN 251 (260)
T ss_dssp HHHHHHHHHC--CTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHH
Confidence 3455666543 45679999999999999998887 468999998 66666554
No 469
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=85.56 E-value=1.8 Score=35.15 Aligned_cols=53 Identities=11% Similarity=0.149 Sum_probs=36.9
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC---------CCCceEEEcccC
Q 024046 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS---------YAGVEHVGGNMF 250 (273)
Q Consensus 195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~---------~~ri~~~~gD~f 250 (273)
..+.++||+||+| ..++.+++ .|+-+.+-+|. |+-.+.|+. .++|+++.||..
T Consensus 28 l~~a~~VLEiGtG--ySTl~lA~-~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~ 90 (202)
T 3cvo_A 28 YEEAEVILEYGSG--GSTVVAAE-LPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIG 90 (202)
T ss_dssp HHHCSEEEEESCS--HHHHHHHT-STTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCS
T ss_pred hhCCCEEEEECch--HHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCch
Confidence 3467899999985 44445554 56788899986 665555432 357999999953
No 470
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=85.19 E-value=1.3 Score=28.29 Aligned_cols=37 Identities=16% Similarity=0.255 Sum_probs=29.8
Q ss_pred hhHHHHhCCCCCHHHHHHHh-----CcCCCCCcchHHHHHHHHhcCCce
Q 024046 49 VFEIIAKAGELSAPEIAAQL-----QAQNVKAPMMLDRMLRLLVSHRVL 92 (273)
Q Consensus 49 lfd~L~~~g~~t~~eLA~~~-----g~~~~~~~~~l~rlL~~L~~~gll 92 (273)
|...|...++.|++||++.+ ++ +..-+.|.|. .+|++
T Consensus 10 i~~ll~~~~~~t~~el~~~l~~~~~~v----s~~Tv~R~L~---~lg~v 51 (64)
T 2p5k_A 10 IREIITSNEIETQDELVDMLKQDGYKV----TQATVSRDIK---ELHLV 51 (64)
T ss_dssp HHHHHHHSCCCSHHHHHHHHHHTTCCC----CHHHHHHHHH---HHTCE
T ss_pred HHHHHHcCCCCCHHHHHHHHHHhCCCc----CHHHHHHHHH---HcCCE
Confidence 34456555799999999999 88 9999999988 55777
No 471
>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56
Probab=84.79 E-value=1.4 Score=39.75 Aligned_cols=41 Identities=17% Similarity=0.235 Sum_probs=33.6
Q ss_pred CCcceEEEecCCccHHHHHHH-HHCCC-CeEEEeec-hHHHHhC
Q 024046 196 QNVERLVDVGGGFGVTLSMIT-SKYPQ-IKAVNFDL-PHVVQDA 236 (273)
Q Consensus 196 ~~~~~vvDVGGG~G~~~~~l~-~~~P~-l~~~~~Dl-p~v~~~a 236 (273)
++...++|||++.|.++..++ +.+|. .+++.++- |...+..
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L 268 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTL 268 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHH
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHH
Confidence 567899999999999999988 67876 78999995 7655543
No 472
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=84.74 E-value=0.95 Score=33.21 Aligned_cols=64 Identities=13% Similarity=0.212 Sum_probs=49.0
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhC------cCCCCCcchHHHHHHHHhcCCceecccc-CCC----cceecChhchHhh
Q 024046 45 IQLGVFEIIAKAGELSAPEIAAQLQ------AQNVKAPMMLDRMLRLLVSHRVLECSVS-GGE----RLYALNPVSKYFV 113 (273)
Q Consensus 45 ~elglfd~L~~~g~~t~~eLA~~~g------~~~~~~~~~l~rlL~~L~~~gll~~~~~-~~~----~~y~lt~~s~~l~ 113 (273)
+++-|+..|.. +|.+--+|++.+. + ++..+.+.|+-|...|+++.... ... ..|++|+.++..+
T Consensus 10 l~~~IL~~L~~-~~~~Gyei~~~l~~~~~~~i----s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~~~l 84 (115)
T 4esb_A 10 LEGCILYIISQ-EEVYGYELSTKLNKHGFTFV----SEGSIYPLLLRMQKEKLIEGTLKASSLGPKRKYYHITDKGLEQL 84 (115)
T ss_dssp HHHHHHHHHHH-SCEEHHHHHHHHHHTTCTTC----CHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHHHcCCCCC----CcChHHHHHHHHHHCCCeEEEeeecCCCCCcEEEEECHHHHHHH
Confidence 34456677776 7999999999985 6 89999999999999999986321 011 2599999987644
No 473
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=84.73 E-value=1 Score=42.80 Aligned_cols=61 Identities=10% Similarity=0.085 Sum_probs=51.6
Q ss_pred HhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhc-----CCceeccccCCCcceecChhchHhhc
Q 024046 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVS-----HRVLECSVSGGERLYALNPVSKYFVS 114 (273)
Q Consensus 46 elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~-----~gll~~~~~~~~~~y~lt~~s~~l~~ 114 (273)
+.-|+..|...+.+|..+|++.+++ ++..+.+.|+.|.. .|+++.. ++.|.+++.......
T Consensus 432 ~~~iL~~l~~~~~it~~~la~~l~~----s~~~~~~~L~~L~~~~~~~~glie~~----g~~y~L~~~~~~~~~ 497 (583)
T 3lmm_A 432 IAIVLYLLFQRPFITIDVVARGLQS----GKEAARNALEAARQTTVAGAPLIIAH----DGVWLLGNACREILR 497 (583)
T ss_dssp HHHHHHHHHHSSSBCHHHHHHHHTS----CHHHHHHHHHHHHTCEETTEESEEEE----TTEEEECHHHHHHHT
T ss_pred HHHHHHHHHHCCCcCHHHHHHHhCc----CHHHHHHHHHHHHhhhccccceEEEe----CCEEEECHHHHHHhc
Confidence 4457888888789999999999999 99999999999999 8999973 378999997655443
No 474
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=84.15 E-value=0.66 Score=35.22 Aligned_cols=33 Identities=9% Similarity=0.084 Sum_probs=31.7
Q ss_pred CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceec
Q 024046 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (273)
Q Consensus 58 ~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~ 94 (273)
..|.++||+.+|+ ++..+.++|.-|...|++..
T Consensus 51 ~ps~~~LA~~~~~----s~~~v~~~L~~L~~KGlI~i 83 (135)
T 2v79_A 51 FPTPNQLQEGMSI----SVEECTNRLRMFIQKGFLFI 83 (135)
T ss_dssp SCCHHHHHTTSSS----CHHHHHHHHHHHHHHTSCEE
T ss_pred CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEE
Confidence 5799999999999 99999999999999999997
No 475
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=83.55 E-value=0.71 Score=35.36 Aligned_cols=64 Identities=16% Similarity=0.154 Sum_probs=45.6
Q ss_pred HHHHhChhHHHHhCCCCCHHHHHHHhCcC-CCCCcchHHHHHHHHhcCCceecccc-CCCcceecC
Q 024046 43 AAIQLGVFEIIAKAGELSAPEIAAQLQAQ-NVKAPMMLDRMLRLLVSHRVLECSVS-GGERLYALN 106 (273)
Q Consensus 43 ~a~elglfd~L~~~g~~t~~eLA~~~g~~-~~~~~~~l~rlL~~L~~~gll~~~~~-~~~~~y~lt 106 (273)
+..+.-|++.|...++.|++||.+.+.-. +.++..-+.|.|+.|+..|++.+... .+..+|.+.
T Consensus 18 T~qR~~Il~~l~~~~h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~i~~~~~~~~Y~~~ 83 (145)
T 3eyy_A 18 TPQRQLVLEAVDTLEHATPDDILGEVRKTASGINISTVYRTLELLEELGLVSHAHLGHGAPTYHLA 83 (145)
T ss_dssp CHHHHHHHHHHHHHSSBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEEEECGGGCEEEEET
T ss_pred CHHHHHHHHHHHhcCCCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEEEEEeCCCceEEEeC
Confidence 34566688888775689999999988321 12388899999999999999997532 112356643
No 476
>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*
Probab=83.21 E-value=1.8 Score=37.62 Aligned_cols=74 Identities=16% Similarity=0.196 Sum_probs=53.2
Q ss_pred CCcceEEEecCCccHHHHHHHHHCC-CCeEEEeechHHHHhCCC---------CCCceEEEcccCCCCC-----CC----
Q 024046 196 QNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDLPHVVQDAPS---------YAGVEHVGGNMFESVP-----EG---- 256 (273)
Q Consensus 196 ~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~~~Dlp~v~~~a~~---------~~ri~~~~gD~f~~~p-----~~---- 256 (273)
.+...||+||||-=...-.+. .| +++++=+|.|.|++..+. .++..+++.|+.+.+. .+
T Consensus 101 ~g~~QvV~LGaGlDTra~Rl~--~~~~~~v~evD~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~ 178 (310)
T 2uyo_A 101 DGIRQFVILASGLDSRAYRLD--WPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPS 178 (310)
T ss_dssp TTCCEEEEETCTTCCHHHHSC--CCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTT
T ss_pred hCCCeEEEeCCCCCchhhhcc--CCCCcEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCC
Confidence 355789999999988866654 35 478899999999885432 3678999999986321 11
Q ss_pred --CEEEecccccccCCC
Q 024046 257 --DAILMKVGNFENYQS 271 (273)
Q Consensus 257 --D~~~l~~vLHd~~~~ 271 (273)
=++++--+||+.+++
T Consensus 179 ~Pt~~i~Egvl~Yl~~~ 195 (310)
T 2uyo_A 179 ARTAWLAEGLLMYLPAT 195 (310)
T ss_dssp SCEEEEECSCGGGSCHH
T ss_pred CCEEEEEechHhhCCHH
Confidence 366777788877654
No 477
>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris}
Probab=83.16 E-value=0.7 Score=41.40 Aligned_cols=53 Identities=15% Similarity=0.236 Sum_probs=45.2
Q ss_pred HhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecC
Q 024046 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALN 106 (273)
Q Consensus 46 elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt 106 (273)
+..|+++|.. +|.++++|+..+|+ +...+...|-.|.-.|++... .++.|+++
T Consensus 330 ~~~vl~~l~~-~~~~~D~l~~~~gl----~~~~v~~~L~~LEl~G~v~~~---~Gg~~~~~ 382 (382)
T 3maj_A 330 RTRILALLGP-SPVGIDDLIRLSGI----SPAVVRTILLELELAGRLERH---GGSLVSLS 382 (382)
T ss_dssp HHHHHHHCCS-SCEEHHHHHHHHCC----CHHHHHHHHHHHHHTTCCEEC---TTSEEEC-
T ss_pred HHHHHHhhCC-CCCCHHHHHHHHCc----CHHHHHHHHHHHHhCCcEEeC---CCceEecC
Confidence 4458888875 69999999999999 999999999999999999973 56777753
No 478
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=82.93 E-value=2.1 Score=35.16 Aligned_cols=39 Identities=18% Similarity=0.153 Sum_probs=35.4
Q ss_pred HhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccc
Q 024046 54 AKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSV 96 (273)
Q Consensus 54 ~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~ 96 (273)
...|..|+.+||+.+|+ +..+....|+.+...|++-.+.
T Consensus 164 ~~~g~vt~~~la~~l~w----s~~~a~e~L~~~e~~G~l~~D~ 202 (218)
T 3cuq_B 164 SEKGSLTSEEFAKLVGM----SVLLAKERLLLAEKMGHLCRDD 202 (218)
T ss_dssp HHTSCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHCCCcCHHHHHHHhCC----CHHHHHHHHHHHHHcCCEEEEC
Confidence 33479999999999999 9999999999999999999874
No 479
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=82.83 E-value=1.2 Score=37.46 Aligned_cols=65 Identities=12% Similarity=0.125 Sum_probs=50.4
Q ss_pred HHhChhHHHHhC--CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCc---ceecChhchHhh
Q 024046 45 IQLGVFEIIAKA--GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (273)
Q Consensus 45 ~elglfd~L~~~--g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~---~y~lt~~s~~l~ 113 (273)
-+..++..|.+. ++.|..|||+.+++ ++..+.++++-|...|++.+.....+. ...+|+.++.+.
T Consensus 35 ~q~~vL~~L~~~~~~~~~~~el~~~l~~----~~~t~t~~l~rLe~~G~i~R~~~~~DrR~~~i~LT~~G~~~~ 104 (250)
T 1p4x_A 35 KEFILLTYLFHQQENTLPFKKIVSDLCY----KQSDLVQHIKVLVKHSYISKVRSKIDERNTYISISEEQREKI 104 (250)
T ss_dssp HHHHHHHHHHSCSCSEEEHHHHHHHSSS----CGGGTHHHHHHHHHTTSCEEEECSSSTTSEEEECCHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCcCHHHHHHHHCC----CHhhHHHHHHHHHHCCCEEecCCCCCCCeEEEEECHHHHHHH
Confidence 345567777653 47899999999999 999999999999999999875322222 467888887654
No 480
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=82.74 E-value=0.74 Score=35.48 Aligned_cols=64 Identities=17% Similarity=0.274 Sum_probs=45.2
Q ss_pred HHHHhChhHHHHhC--CCCCHHHHHHHhCcC-CCCCcchHHHHHHHHhcCCceecccc-CCCcceecC
Q 024046 43 AAIQLGVFEIIAKA--GELSAPEIAAQLQAQ-NVKAPMMLDRMLRLLVSHRVLECSVS-GGERLYALN 106 (273)
Q Consensus 43 ~a~elglfd~L~~~--g~~t~~eLA~~~g~~-~~~~~~~l~rlL~~L~~~gll~~~~~-~~~~~y~lt 106 (273)
+..+.-|++.|... ++.|++||.+.+.-. +.++..-+.|.|+.|+..|++.+... .+..+|.++
T Consensus 16 T~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~~ 83 (150)
T 2w57_A 16 TLPRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTRHHFEGGKSVFELS 83 (150)
T ss_dssp CHHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEEECGGGCEEEEEC
T ss_pred CHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEEEEEeCCCceEEEec
Confidence 34566688888653 489999999998210 11288899999999999999997532 122356643
No 481
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=82.52 E-value=0.63 Score=33.44 Aligned_cols=44 Identities=27% Similarity=0.319 Sum_probs=35.5
Q ss_pred ChhHHHHhCCCC-CHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecc
Q 024046 48 GVFEIIAKAGEL-SAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (273)
Q Consensus 48 glfd~L~~~g~~-t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~ 95 (273)
.|...|...+.. |..+||+.+|+ +...+++-|+.|...|+++..
T Consensus 32 ~I~~~l~~g~~lps~~eLa~~lgV----Sr~tVr~al~~L~~~GlI~~~ 76 (102)
T 2b0l_A 32 HIFEELDGNEGLLVASKIADRVGI----TRSVIVNALRKLESAGVIESR 76 (102)
T ss_dssp HHTTSSBTTEEEECHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHhhhcCCCcCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 344444442245 99999999999 999999999999999999864
No 482
>3ri2_A Transcriptional regulator, PADR-like family; PSI-biology, midwest center for structural genomics, MCSG, transcription regulator; 2.10A {Eggerthella lenta} PDB: 4ejo_A
Probab=82.24 E-value=2.5 Score=31.34 Aligned_cols=72 Identities=13% Similarity=0.147 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHhChhHHHHhCCCCCHHHHHHHh-----CcCCCCCcchHHHHHHHHhcCCceeccccCC----CcceecC
Q 024046 36 VLPMATQAAIQLGVFEIIAKAGELSAPEIAAQL-----QAQNVKAPMMLDRMLRLLVSHRVLECSVSGG----ERLYALN 106 (273)
Q Consensus 36 ~~~~aL~~a~elglfd~L~~~g~~t~~eLA~~~-----g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~----~~~y~lt 106 (273)
+.++.+.-.+++=|+-.|. +|.+--+|.+.+ ++ ++..+..+|+-|...|+++...... ...|++|
T Consensus 13 ~~~~l~~g~l~~~IL~lL~--~p~~GYei~~~l~~~~~~i----s~gtlY~~L~rLe~~GlI~~~~~~~~~~~rk~Y~LT 86 (123)
T 3ri2_A 13 MVLELRRGTLVMLVLSQLR--EPAYGYALVKSLADHGIPI----EANTLYPLMRRLESQGLLASEWDNGGSKPRKYYRTT 86 (123)
T ss_dssp HHHHHHHHHHHHHHHHHTT--SCEEHHHHHHHHHHTTCCC----CHHHHHHHHHHHHHTTSEEEEEEECSSCEEEEEEEC
T ss_pred HHHHHHhCcHHHHHHHHHc--CCCCHHHHHHHHHHhCCCC----CcchHHHHHHHHHHCCCEEEEeccCCCCCceEEEEC
Confidence 4555666667777888886 689999998886 66 8999999999999999998642101 1369999
Q ss_pred hhchHhh
Q 024046 107 PVSKYFV 113 (273)
Q Consensus 107 ~~s~~l~ 113 (273)
+.++..+
T Consensus 87 ~~Gr~~l 93 (123)
T 3ri2_A 87 DEGLRVL 93 (123)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987654
No 483
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=81.70 E-value=1.5 Score=37.96 Aligned_cols=39 Identities=13% Similarity=0.210 Sum_probs=34.8
Q ss_pred HHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCcee-c
Q 024046 52 IIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLE-C 94 (273)
Q Consensus 52 ~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~-~ 94 (273)
.|...++.|.+|||+.+|+ ++.-++|.|..|...|+++ +
T Consensus 15 ~l~~~~~~~~~ela~~l~v----S~~tIrRdL~~l~~~G~v~ir 54 (315)
T 2w48_A 15 QLYYEQDMTQAQIARELGI----YRTTISRLLKRGREQGIVTIA 54 (315)
T ss_dssp HHHHTSCCCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEE
Confidence 3444478999999999999 9999999999999999997 5
No 484
>3eqx_A FIC domain containing transcriptional regulator; FIC family protein, structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.60A {Shewanella oneidensis}
Probab=81.46 E-value=1.6 Score=38.98 Aligned_cols=64 Identities=17% Similarity=0.168 Sum_probs=48.2
Q ss_pred hhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhchHhhcCC
Q 024046 49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNK 116 (273)
Q Consensus 49 lfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~~l~~~~ 116 (273)
+++.|...+..|++++++.+|+ +..-..+.|+.|+..|++++..+++...|...+.-+.|..+.
T Consensus 302 ll~~l~~~p~~t~~~~~~~~~~----S~~TA~r~L~~L~e~GiL~~~~~gR~~~y~~~~~l~il~~~~ 365 (373)
T 3eqx_A 302 LVQVIFEQPYCRIQNLVESGLA----KRQTASVYLKQLCDIGVLEEVQSGKEKLFVHPKFVTLMTKDS 365 (373)
T ss_dssp HHHHHHHCSEEEHHHHHHTSSS----CHHHHHHHHHHHHHTTSCEEC--CCSCEEECHHHHHHHHSSC
T ss_pred HHHHHHHCCCccHHHHHHHhCc----CHHHHHHHHHHHHHCCcEEEeCCCCceEeehHHHHHHHhccC
Confidence 6677776556899999999999 999999999999999999986433334576666655555443
No 485
>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}
Probab=81.01 E-value=1.9 Score=40.35 Aligned_cols=65 Identities=12% Similarity=-0.063 Sum_probs=43.9
Q ss_pred HHHHhhcccCCCcceEEEecCCccHHHHHHHHHC-------------CCCeEEEeec-hHHHHhCCC------CCCceEE
Q 024046 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-------------PQIKAVNFDL-PHVVQDAPS------YAGVEHV 245 (273)
Q Consensus 186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-------------P~l~~~~~Dl-p~v~~~a~~------~~ri~~~ 245 (273)
..+++..+ .....+|+|-.||+|.++.+..+.. .+.+..++|+ |.+...|+- .+.-.+.
T Consensus 207 ~lmv~l~~-p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~I~ 285 (530)
T 3ufb_A 207 RFMVEVMD-PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPRID 285 (530)
T ss_dssp HHHHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCEEE
T ss_pred HHHHHhhc-cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCcccccc
Confidence 33445444 4456799999999999998876542 2356899998 666665542 1344667
Q ss_pred EcccCC
Q 024046 246 GGNMFE 251 (273)
Q Consensus 246 ~gD~f~ 251 (273)
.+|.+.
T Consensus 286 ~~dtL~ 291 (530)
T 3ufb_A 286 PENSLR 291 (530)
T ss_dssp CSCTTC
T ss_pred cccccc
Confidence 888875
No 486
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=80.99 E-value=1 Score=33.26 Aligned_cols=51 Identities=10% Similarity=0.077 Sum_probs=39.8
Q ss_pred ChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecC
Q 024046 48 GVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALN 106 (273)
Q Consensus 48 glfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt 106 (273)
.|.+.+.. .|.++.|||+.+|+ ++..+..+|+.|...|.+... ..+.|-++
T Consensus 11 ~i~~~~~~-~p~~~~~la~~~~~----~~~~~~~~l~~l~~~G~l~~i---~~~~~~~~ 61 (121)
T 2pjp_A 11 KAEPLFGD-EPWWVRDLAKETGT----DEQAMRLTLRQAAQQGIITAI---VKDRYYRN 61 (121)
T ss_dssp HHGGGCSS-SCEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEE---ETTEEEEH
T ss_pred HHHHHHHh-CCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEe---cCCceECH
Confidence 34455543 47799999999999 999999999999999999874 44555443
No 487
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.18 E-value=1 Score=32.00 Aligned_cols=47 Identities=17% Similarity=0.313 Sum_probs=41.0
Q ss_pred HHhChhHHHHhCC--CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecc
Q 024046 45 IQLGVFEIIAKAG--ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (273)
Q Consensus 45 ~elglfd~L~~~g--~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~ 95 (273)
-|.-|+..|.+.| +++..||...+++ +..-+.++|..|...|++...
T Consensus 38 ~E~lVy~~I~~aGn~GIw~kdL~~~tnL----~~~~vtkiLK~LE~k~lIK~V 86 (95)
T 2yu3_A 38 QEKLVYQIIEDAGNKGIWSRDVRYKSNL----PLTEINKILKNLESKKLIKAV 86 (95)
T ss_dssp HHHHHHHHHHHHTTSCEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHhCC----CHHHHHHHHHHHHhCCCEEEe
Confidence 4555777887766 6999999999999 999999999999999999874
No 488
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=80.12 E-value=0.13 Score=45.60 Aligned_cols=61 Identities=13% Similarity=0.080 Sum_probs=48.7
Q ss_pred HHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChh
Q 024046 43 AAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPV 108 (273)
Q Consensus 43 ~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~ 108 (273)
+..+..++-+|-..|+.|+.|||+.+|+ +...+.+.|+-|...|++.... +.+..|+..+.
T Consensus 17 s~~ea~vY~~Ll~~g~~t~~eia~~~gv----~~~~Vy~~L~~L~~~GlV~~~~-g~p~~y~av~p 77 (342)
T 3qph_A 17 TKYEILTYWTLLVYGPSTAKEISTKSGI----PYNRVYDTISSLKLRGFVTEIE-GTPKVYAAYSP 77 (342)
T ss_dssp HHHTTSCSHHHHHHHHHHHSCCSSSTTS----SSCSCCHHHHHHHHHTSEEEEC-CTTCEEEECCH
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEc-CceeEEEEcCH
Confidence 3456667777777689999999999999 9999999999999999998753 24456665543
No 489
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=79.39 E-value=0.38 Score=45.70 Aligned_cols=58 Identities=16% Similarity=0.185 Sum_probs=0.0
Q ss_pred hChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChh
Q 024046 47 LGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPV 108 (273)
Q Consensus 47 lglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~ 108 (273)
--|.+.|...|.+|..||++.+|+ +...+.++|+-|+..|+++..+.....+|..+++
T Consensus 519 ~~I~~~l~~~g~it~~di~~l~~l----s~~qa~~~L~~Lv~~G~l~~~G~gr~t~Y~~~~~ 576 (583)
T 3lmm_A 519 NAAMLWLSEVGDLATSDLMAMCGV----SRGTAKACVDGLVDEERVVAVGGGRSRRYRLVEL 576 (583)
T ss_dssp --------------------------------------------------------------
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCcEEEeCCCCceEEEEeec
Confidence 347888888789999999999999 9999999999999999998753323345666654
No 490
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=79.35 E-value=4.4 Score=29.92 Aligned_cols=40 Identities=23% Similarity=0.301 Sum_probs=34.0
Q ss_pred HHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHh
Q 024046 42 QAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLV 87 (273)
Q Consensus 42 ~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~ 87 (273)
..+-++.|+..|.+ | +|..|||+.+|+ +..-+.|+-+.|.
T Consensus 61 aLs~R~eV~klL~~-G-~syreIA~~~g~----S~aTIsRv~r~L~ 100 (119)
T 3kor_A 61 SLSQRLQVAKMIKQ-G-YTYATIEQESGA----STATISRVKRSLQ 100 (119)
T ss_dssp HHHHHHHHHHHHHH-T-CCHHHHHHHHCC----CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-C-CCHHHHHHHHCC----CHHHHHHHHHHHh
Confidence 44566899999988 4 999999999999 9988888888775
No 491
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=77.43 E-value=2.3 Score=37.92 Aligned_cols=64 Identities=17% Similarity=0.163 Sum_probs=46.8
Q ss_pred ChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhchHhhcC
Q 024046 48 GVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSN 115 (273)
Q Consensus 48 glfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~~l~~~ 115 (273)
.|.+.|....-.+++++++.+|+ +.+-.+|.|+.|+..|++++...++...|...+.-..|..+
T Consensus 301 ~ll~~l~~~p~~t~~~~~~~~gv----S~~Ta~r~L~~L~e~GiL~~~~~gR~~~y~~~~~~~~l~~~ 364 (373)
T 2qc0_A 301 ELVQVIFEQPYCRIQNLVESGLA----KRQTASVYLKQLCDIGVLEEVQSGKEKLFVHPKFVTLMTKD 364 (373)
T ss_dssp HHHHHHHHCSEEEHHHHHHTSSS----CHHHHHHHHHHHHHTTSCEEC--CCSCEEECHHHHHHHHSS
T ss_pred HHHHHHHhCCcccHHHHHHHhCC----CHHHHHHHHHHHHHCCcEEEecCCCceEEehHHHHHHHccC
Confidence 36667766334589999999999 99999999999999999998643233456666655555443
No 492
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=76.69 E-value=3.8 Score=29.60 Aligned_cols=32 Identities=22% Similarity=0.397 Sum_probs=30.4
Q ss_pred CHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecc
Q 024046 60 SAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (273)
Q Consensus 60 t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~ 95 (273)
|..+||+.+|+ +..-+++.|..|...|+++..
T Consensus 35 s~~~La~~~~v----Sr~tvr~al~~L~~~Gli~~~ 66 (113)
T 3tqn_A 35 SIRKISTEYQI----NPLTVSKAYQSLLDDNVIEKR 66 (113)
T ss_dssp CHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence 89999999999 999999999999999999874
No 493
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=76.02 E-value=2.1 Score=37.37 Aligned_cols=56 Identities=16% Similarity=0.126 Sum_probs=43.5
Q ss_pred HhChhHHHHh-CC-CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecCh
Q 024046 46 QLGVFEIIAK-AG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP 107 (273)
Q Consensus 46 elglfd~L~~-~g-~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~ 107 (273)
+..|++.|.+ .| +.|.++||+.+|+ +...+.+.++.|...|+.-+. .....|++.+
T Consensus 5 ~~~iL~~L~~~~g~~~Sg~eLa~~lgv----Sr~aV~k~i~~L~~~G~~i~~--~~~~GY~L~~ 62 (323)
T 3rkx_A 5 SQDVLQLLYKNKPNYISGQSIAESLNI----SRTAVKKVIDQLKLEGCKIDS--VNHKGHLLQQ 62 (323)
T ss_dssp HHHHHHHHHHHTTSCBCHHHHHHHHTS----CHHHHHHHHHHHHHTTCEEEE--ETTTEEEEEE
T ss_pred HHHHHHHHHhCCCCccCHHHHHHHHCC----CHHHHHHHHHHHHhcCCeEEE--eCCCeEEEec
Confidence 3457888843 24 8999999999999 999999999999999995542 1334577764
No 494
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=75.72 E-value=3.1 Score=28.03 Aligned_cols=38 Identities=16% Similarity=0.273 Sum_probs=32.7
Q ss_pred ChhHHHHhCC--CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcC
Q 024046 48 GVFEIIAKAG--ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSH 89 (273)
Q Consensus 48 glfd~L~~~g--~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~ 89 (273)
-|.+.|.+.| ..++++||+.+|+ ++..+.++|+.+...
T Consensus 36 ~iI~~LD~~GYL~~~l~eia~~l~~----~~~eve~vL~~lQ~~ 75 (76)
T 2k9l_A 36 ELLNYLNEKGFLSKSVEEISDVLRC----SVEELEKVRQKVLRL 75 (76)
T ss_dssp HHHHHCTTSSTTCCCHHHHHHHHTS----CHHHHHHHHHHHHTT
T ss_pred HHHHhcCCCCCCCCCHHHHHHHcCC----CHHHHHHHHHHHhcC
Confidence 3677888888 8999999999999 999999999987653
No 495
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=74.68 E-value=3.6 Score=32.99 Aligned_cols=42 Identities=26% Similarity=0.377 Sum_probs=36.1
Q ss_pred CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecCh
Q 024046 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP 107 (273)
Q Consensus 58 ~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~ 107 (273)
+.|-.+||..+|+ ++..+.|+|..|...|+++. ..+.+.+..
T Consensus 175 ~~t~~~iA~~lg~----sr~tvsR~l~~L~~~g~I~~----~~~~i~i~d 216 (231)
T 3e97_A 175 PLGTQDIMARTSS----SRETVSRVLKRLEAHNILEV----SPRSVTLLD 216 (231)
T ss_dssp CCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE----CSSCEEESC
T ss_pred CCCHHHHHHHhCC----cHHHHHHHHHHHHHCCcEEe----cCCEEEEeC
Confidence 7899999999999 99999999999999999996 345555443
No 496
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=74.47 E-value=3.2 Score=32.96 Aligned_cols=42 Identities=17% Similarity=0.262 Sum_probs=36.1
Q ss_pred CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecCh
Q 024046 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP 107 (273)
Q Consensus 58 ~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~ 107 (273)
+.|-++||..+|+ ++..+.|+|.-|...|+++. ..+.+.+..
T Consensus 169 ~~t~~~lA~~lg~----sr~tvsR~l~~L~~~g~I~~----~~~~i~i~d 210 (220)
T 3dv8_A 169 KITHETIANHLGS----HREVITRMLRYFQVEGLVKL----SRGKITILD 210 (220)
T ss_dssp CCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE----ETTEEEESC
T ss_pred cCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEe----CCCEEEEeC
Confidence 8999999999999 99999999999999999986 345555443
No 497
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=74.18 E-value=3.2 Score=24.23 Aligned_cols=29 Identities=17% Similarity=0.165 Sum_probs=23.9
Q ss_pred CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCC
Q 024046 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHR 90 (273)
Q Consensus 58 ~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~g 90 (273)
..|..+||+.+|+ +..-+.++++.....|
T Consensus 21 g~s~~~IA~~lgi----s~~Tv~~~~~~~~~~g 49 (51)
T 1tc3_C 21 NVSLHEMSRKISR----SRHCIRVYLKDPVSYG 49 (51)
T ss_dssp TCCHHHHHHHHTC----CHHHHHHHHHCSTTTT
T ss_pred CCCHHHHHHHHCc----CHHHHHHHHhhHHhcC
Confidence 5899999999999 9999999887554433
No 498
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=74.07 E-value=3.5 Score=30.48 Aligned_cols=41 Identities=20% Similarity=0.275 Sum_probs=34.0
Q ss_pred CC-CHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCccee
Q 024046 58 EL-SAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYA 104 (273)
Q Consensus 58 ~~-t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~ 104 (273)
.+ |..+||+.+|+ +..-+++.+..|...|+++.. .+.|.|-
T Consensus 36 ~Lps~~~La~~~~v----Sr~tvr~Al~~L~~~G~i~~~--~g~G~~V 77 (125)
T 3neu_A 36 KLPSVREMGVKLAV----NPNTVSRAYQELERAGYIYAK--RGMGSFV 77 (125)
T ss_dssp BCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE--TTTEEEE
T ss_pred CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCeEEEe--cCCEEEE
Confidence 44 69999999999 999999999999999999974 2345443
No 499
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=73.94 E-value=4.8 Score=33.75 Aligned_cols=57 Identities=19% Similarity=0.211 Sum_probs=43.8
Q ss_pred HHHHhChhHHHHhCC--CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecC
Q 024046 43 AAIQLGVFEIIAKAG--ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALN 106 (273)
Q Consensus 43 ~a~elglfd~L~~~g--~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt 106 (273)
......|.+.+...| |-++.||++.+++ ++..+..+|+.|+..|.+.+. .++.|-++
T Consensus 140 ~~~~~~i~~~~~~~g~~pp~~~dl~~~l~~----~~~~~~~~l~~l~~~g~lv~l---~~~~~~~~ 198 (258)
T 1lva_A 140 KKLLKDLEDKYRVSRWQPPSFKEVAGSFNL----DPSELEELLHYLVREGVLVKI---NDEFYWHR 198 (258)
T ss_dssp HHHHHHHHHHHHHHTTSCCBHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEES---SSSBEEEH
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHhHhCC----CHHHHHHHHHHHHHCCCEEEe---cCCeEEcH
Confidence 344445666665556 7789999999999 999999999999999999874 45555333
No 500
>3mag_A VP39; methylated adenine, methyltransferase, RNA CAP analog, poly (A) polymerase, mRNA processing, transcription; HET: SAH 3MA; 1.80A {Vaccinia virus} SCOP: c.66.1.25 PDB: 1bky_A* 1jsz_A* 1v39_A* 1p39_A* 1vp9_A* 2vp3_A* 1eam_A* 1jte_A* 1jtf_A* 4dcg_A* 3mct_A* 1b42_A* 1eqa_A* 1av6_A* 3er9_A* 2gaf_A 3er8_A 2ga9_A* 3erc_A*
Probab=73.79 E-value=2 Score=36.89 Aligned_cols=53 Identities=17% Similarity=0.187 Sum_probs=39.0
Q ss_pred CcceEEEecCCccHHHHHHHHHCCC----CeEEEeec-hHHHHhCCCCCCceEEEcccCC
Q 024046 197 NVERLVDVGGGFGVTLSMITSKYPQ----IKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE 251 (273)
Q Consensus 197 ~~~~vvDVGGG~G~~~~~l~~~~P~----l~~~~~Dl-p~v~~~a~~~~ri~~~~gD~f~ 251 (273)
++..||=||+|.|..+..|.+.||+ ++.+++|- |. +......+.|+++.. +++
T Consensus 60 ~~~~VVYVGSApG~HL~~L~~~fp~~f~~ikWvLiDPap~-~~~l~~~~NV~li~~-fvd 117 (307)
T 3mag_A 60 DGATVVYIGSAPGTHIRYLRDHFYNLGVIIKWMLIDGRHH-DPILNGLRDVTLVTR-FVD 117 (307)
T ss_dssp TTCEEEEESCCSCHHHHHHHHHHHHTTCCCEEEEEESSCC-CGGGTTCTTEEEEEC-CCC
T ss_pred CCcEEEEecccCccHHHHHHHhchhhCCCeEEEEEcCCcc-hhhhcCCCcEEEEec-cCC
Confidence 4579999999999999999999887 59999995 22 222233466776665 554
Done!