Query 024047
Match_columns 273
No_of_seqs 224 out of 1766
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 08:33:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024047.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024047hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09501 potD spermidine/putre 100.0 7.4E-37 1.6E-41 284.8 21.5 214 1-246 134-347 (348)
2 COG0687 PotD Spermidine/putres 100.0 2.8E-35 6.1E-40 276.3 21.4 215 1-245 139-361 (363)
3 PRK10682 putrescine transporte 100.0 1.9E-34 4.1E-39 270.7 21.3 217 1-245 138-368 (370)
4 TIGR03261 phnS2 putative 2-ami 99.9 8.7E-25 1.9E-29 202.4 17.7 149 1-176 126-281 (334)
5 PF13343 SBP_bac_6: Bacterial 99.9 3E-24 6.5E-29 189.7 13.4 151 1-177 57-209 (242)
6 PRK11622 hypothetical protein; 99.9 1.2E-22 2.6E-27 193.2 18.7 217 1-242 159-396 (401)
7 TIGR03227 PhnS 2-aminoethylpho 99.9 8.7E-23 1.9E-27 191.9 12.4 151 1-176 141-300 (367)
8 TIGR01276 thiB thiamine ABC tr 99.9 4.9E-22 1.1E-26 181.9 13.4 152 1-177 107-260 (309)
9 PRK11205 tbpA thiamine transpo 99.9 1.5E-21 3.4E-26 180.4 14.2 150 1-177 128-281 (330)
10 TIGR01254 sfuA ABC transporter 99.9 1.8E-21 3.9E-26 177.9 12.4 151 1-177 107-261 (304)
11 PRK15046 2-aminoethylphosphona 99.8 1.9E-19 4E-24 168.0 11.0 150 1-176 136-293 (349)
12 PF13416 SBP_bac_8: Bacterial 99.8 5.9E-18 1.3E-22 151.2 13.6 177 2-201 96-276 (281)
13 COG1840 AfuA ABC-type Fe3+ tra 99.8 1.4E-17 2.9E-22 152.6 14.3 153 1-177 87-245 (299)
14 COG4143 TbpA ABC-type thiamine 99.7 5.9E-17 1.3E-21 147.3 9.9 197 1-243 132-333 (336)
15 TIGR01256 modA molybdenum ABC 99.5 2.5E-14 5.4E-19 124.2 8.2 135 2-175 77-213 (216)
16 TIGR00971 3a0106s03 sulfate/th 99.5 2.2E-13 4.8E-18 126.0 14.4 149 1-176 105-265 (315)
17 PRK10852 thiosulfate transport 99.5 1.1E-12 2.4E-17 122.5 14.1 148 1-176 122-282 (338)
18 PRK10752 sulfate transporter s 99.4 1.1E-12 2.4E-17 122.0 13.3 148 2-176 117-276 (329)
19 COG4134 ABC-type uncharacteriz 99.4 1.7E-12 3.7E-17 118.6 10.8 180 1-200 152-347 (384)
20 PF13531 SBP_bac_11: Bacterial 99.1 9.7E-10 2.1E-14 96.1 11.9 138 1-176 81-226 (230)
21 TIGR03850 bind_CPR_0540 carboh 99.0 4.6E-09 9.9E-14 100.2 14.1 166 1-185 161-363 (437)
22 PF01547 SBP_bac_1: Bacterial 99.0 7.2E-09 1.6E-13 92.8 12.1 153 2-172 116-315 (315)
23 PRK03537 molybdate ABC transpo 99.0 1.4E-08 3.1E-13 87.1 13.2 151 2-184 25-185 (188)
24 PRK10677 modA molybdate transp 99.0 5.4E-09 1.2E-13 94.1 11.0 136 2-175 110-250 (257)
25 PRK09474 malE maltose ABC tran 98.9 3.4E-08 7.3E-13 93.0 13.7 160 1-176 139-321 (396)
26 TIGR03851 chitin_NgcE carbohyd 98.8 4.5E-08 9.8E-13 94.1 13.3 158 2-177 164-363 (450)
27 PRK10974 glycerol-3-phosphate 98.6 1.3E-06 2.7E-11 83.9 15.1 171 1-184 147-350 (438)
28 COG1653 UgpB ABC-type sugar tr 98.5 5.8E-07 1.3E-11 84.1 9.7 162 2-175 149-345 (433)
29 COG1613 Sbp ABC-type sulfate t 98.4 4.6E-06 1E-10 75.7 11.8 145 17-185 144-299 (348)
30 PRK04168 molybdate ABC transpo 98.3 1.3E-05 2.8E-10 75.0 12.3 92 87-200 212-332 (334)
31 COG0725 ModA ABC-type molybdat 97.8 0.00023 5.1E-09 64.2 10.9 75 88-176 177-251 (258)
32 COG2182 MalE Maltose-binding p 97.6 0.0004 8.6E-09 66.8 9.9 156 2-176 152-336 (420)
33 PF02030 Lipoprotein_8: Hypoth 97.6 0.00038 8.3E-09 67.5 9.5 150 1-167 151-335 (493)
34 COG4150 CysP ABC-type sulfate 97.4 0.00039 8.4E-09 61.8 6.5 135 17-176 138-287 (341)
35 TIGR03730 tungstate_WtpA tungs 96.7 0.0079 1.7E-07 54.8 8.2 66 87-165 185-273 (273)
36 COG4588 AcfC Accessory coloniz 95.4 0.068 1.5E-06 46.6 7.4 89 71-176 155-247 (252)
37 PF12727 PBP_like: PBP superfa 84.1 12 0.00026 32.1 9.8 58 87-165 134-192 (193)
38 COG2998 TupB ABC-type tungstat 76.9 4.4 9.6E-05 36.1 4.7 72 94-176 187-260 (280)
39 PRK11063 metQ DL-methionine tr 73.2 15 0.00032 33.3 7.4 79 86-177 184-262 (271)
40 TIGR00363 lipoprotein, YaeC fa 73.1 15 0.00032 33.1 7.3 80 85-177 170-249 (258)
41 PF09084 NMT1: NMT1/THI5 like; 56.9 72 0.0016 26.7 8.2 69 87-167 130-204 (216)
42 COG1910 Periplasmic molybdate- 53.6 57 0.0012 28.9 6.9 66 87-174 140-206 (223)
43 cd00134 PBPb Bacterial peripla 47.7 58 0.0013 26.1 5.9 67 87-167 136-203 (218)
44 COG4521 TauA ABC-type taurine 46.1 28 0.0006 31.6 3.9 60 80-140 60-120 (334)
45 smart00062 PBPb Bacterial peri 44.7 1E+02 0.0023 24.4 7.0 53 87-140 137-191 (219)
46 PRK09861 cytoplasmic membrane 42.7 1E+02 0.0022 27.9 7.2 79 86-177 185-263 (272)
47 PF03401 TctC: Tripartite tric 41.8 2.1E+02 0.0046 25.6 9.1 36 131-175 205-240 (274)
48 PF13379 NMT1_2: NMT1-like fam 36.0 1.8E+02 0.0038 25.3 7.5 115 17-167 105-231 (252)
49 PF11324 DUF3126: Protein of u 31.3 26 0.00057 24.8 1.1 13 251-263 2-14 (63)
50 PF09084 NMT1: NMT1/THI5 like; 31.2 88 0.0019 26.2 4.6 36 87-122 32-67 (216)
51 PF03202 Lipoprotein_10: Putat 30.5 49 0.0011 27.0 2.7 27 131-169 6-32 (135)
52 TIGR03871 ABC_peri_MoxJ_2 quin 26.9 3.8E+02 0.0082 22.4 9.0 66 87-166 144-214 (232)
53 PF12974 Phosphonate-bd: ABC t 26.1 2.9E+02 0.0062 23.7 7.1 76 67-142 16-97 (243)
54 PRK11553 alkanesulfonate trans 23.6 1.6E+02 0.0035 26.5 5.2 69 87-168 166-236 (314)
55 smart00079 PBPe Eukaryotic hom 22.6 3.2E+02 0.007 20.7 6.2 58 80-140 47-105 (134)
56 TIGR03427 ABC_peri_uca ABC tra 22.2 1.8E+02 0.004 27.0 5.3 67 87-167 143-213 (328)
57 TIGR01728 SsuA_fam ABC transpo 22.0 1.8E+02 0.004 25.1 5.1 68 87-167 138-209 (288)
58 PF12849 PBP_like_2: PBP super 21.8 75 0.0016 28.1 2.6 35 125-169 246-281 (281)
59 PF00123 Hormone_2: Peptide ho 21.7 63 0.0014 19.0 1.4 11 157-167 18-28 (28)
60 TIGR01098 3A0109s03R phosphate 20.7 2.5E+02 0.0053 24.1 5.6 65 87-167 184-253 (254)
No 1
>PRK09501 potD spermidine/putrescine ABC transporter periplasmic substrate-binding protein; Reviewed
Probab=100.00 E-value=7.4e-37 Score=284.80 Aligned_cols=214 Identities=24% Similarity=0.364 Sum_probs=189.6
Q ss_pred CEEEEeCccccccCCCCCCChHHhcCcccCCcEEeeCChHHHHHHHHHHhCCCCCCCChhhhhhchHHHHHHHHHHHhcc
Q 024047 1 MVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNIDLQVAGGKISVQQNLALLANQ 80 (273)
Q Consensus 1 ~gi~YN~~~v~~~g~~~p~SW~dL~dp~~kGki~~~d~~~~~~~~al~~~G~~~~~~~~~~~~~~~~~~~~~~L~~l~~~ 80 (273)
+||+||++++++ .+|+||++||+|+|+|+|+|.+++.+.+..++.++|.+.+..+++ +++++++.|.+++++
T Consensus 134 ~~i~YN~d~v~~---~~~~sw~dL~~p~~~g~i~~~~~~~~~~~~al~~~G~~~~~~~~~-----~~~~a~~~l~~l~~~ 205 (348)
T PRK09501 134 TAIGVNSDAIDP---KSVTSWADLWKPEYKGSLLLTDDAREVFQMALRKLGYSGNTTDPK-----EIEAAYNELKKLMPN 205 (348)
T ss_pred eEEEEcHHHcCC---CCCCCHHHHhCHHHcCCeEEeCCHHHHHHHHHHHcCCCCCCCCHH-----HHHHHHHHHHHhhhh
Confidence 479999999975 378999999999999999999988888888888999887776665 467889999999999
Q ss_pred cccccchhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEEecCCCceeeeeeEEEecCCCCcccccCCCCCCChHHHHH
Q 024047 81 ARLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPSPLIHQ 160 (273)
Q Consensus 81 v~~~~~~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~ 160 (273)
+..|+.+...+.|.+||++++++|+++...++..|.++++++|+||+..|+|+++|+|+++|++ +|++
T Consensus 206 v~~~~~~~~~~~l~~Gev~i~~~w~~~~~~~~~~g~~i~~~~P~eG~~~~~~~~~i~k~a~n~e------------~A~~ 273 (348)
T PRK09501 206 VAAFNSDNPANPYMEGEVNLGMIWNGSAFVARQAGTPIDVVWPKEGGIFWMDSLAIPANAKNKE------------GALK 273 (348)
T ss_pred hEEEcCcHHHHHHHcCCEEEEEeehHHHHHHHhcCCCceEEecCCCcceEEEeeeEECCCCCHH------------HHHH
Confidence 8888776778899999999999999999888888999999999999999999999999999998 9999
Q ss_pred HHHHHhcHHHhchhhhhhcCCCCCChhhhhccCCChHHhcCCCCCCCCcccCCCCHHHHhhceeccCCCHHHHHHHHHHH
Q 024047 161 WIEFCLQTARALPFKQEVIPGASPSALETTLVKLPEELLKGKPSQDTNLIVGVPPAEILARCEFLEPLSEATLSDYEWLV 240 (273)
Q Consensus 161 FInfllspe~q~~~~~~~~~~~~p~~~~~a~~~l~~e~~~~~~~~~~~l~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~W 240 (273)
|||||+|||+|+.+++ ..+|.+|| ..+.+.||+++++++ .+||+.+.+++++++.++++. .+.|+++|
T Consensus 274 Fi~~llspe~q~~~~~-~~~~~~~n--~~a~~~l~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~w 341 (348)
T PRK09501 274 LINFLLRPDVAKQVAE-TIGYPTPN--LAARKLLSPEVANDK--------SLYPDAETIKKGEWQNDVGAA-SSIYEEYY 341 (348)
T ss_pred HHHHHhCHHHHHHHHH-HhCCCChh--HHHHHhCCHHHhcCC--------CcCcCHHHHhccEEecCCCHH-HHHHHHHH
Confidence 9999999999999985 56776665 578889999998764 359999999999999999864 68899999
Q ss_pred HHhhCC
Q 024047 241 ADLQKP 246 (273)
Q Consensus 241 ~~ik~~ 246 (273)
++||+.
T Consensus 342 ~~~~~~ 347 (348)
T PRK09501 342 QKLKAG 347 (348)
T ss_pred HHHhcc
Confidence 999963
No 2
>COG0687 PotD Spermidine/putrescine-binding periplasmic protein [Amino acid transport and metabolism]
Probab=100.00 E-value=2.8e-35 Score=276.33 Aligned_cols=215 Identities=28% Similarity=0.469 Sum_probs=188.1
Q ss_pred CEEEEeCccccccCCCCCCChHHhcCcc----cCCc-EEeeCChHHHHHHHHHHhCCCCCCCChhhhhhchHHHHHHHHH
Q 024047 1 MVIAYKKSKFRKHNLAPIEDWKDLWRPE----LAGR-ISMVNSPREVIGSVLKYMGASYNSNNIDLQVAGGKISVQQNLA 75 (273)
Q Consensus 1 ~gi~YN~~~v~~~g~~~p~SW~dL~dp~----~kGk-i~~~d~~~~~~~~al~~~G~~~~~~~~~~~~~~~~~~~~~~L~ 75 (273)
+||+||+++|+.. .+|+||++|||++ ++|+ +.+.|++++++.+++.++|.++|+.+++ .++++.+.|.
T Consensus 139 t~i~Yn~~~~~~~--~~~~sW~~l~d~~~~~~~k~~~~~~~d~~~~~~~~al~~lg~~~n~~~~~-----~~~~a~~~L~ 211 (363)
T COG0687 139 TGIAYNTDKVKDA--PPPTSWADLFDPEKFPGLKGKGVALLDDDREVFGAALALLGKSPNTTDPE-----DLKKAFDLLD 211 (363)
T ss_pred eEEEEeccccCCC--CCCccHHHHhCchhhHHHhCCceEEecChHHHHHHHHHHcCCCCCCCCHH-----HHHHHHHHHH
Confidence 6899999999821 3789999999997 7898 9999999999999999999998887776 4789999999
Q ss_pred HHhc-ccccccchhHHHHhhcCcEEEEEeccccHHHHH--hcCCCcEEEecCCCceeeeeeEEEecCCCCcccccCCCCC
Q 024047 76 LLAN-QARLFDSTHYLKAFGIGDVWVAVGWSSDVLPAV--KRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVR 152 (273)
Q Consensus 76 ~l~~-~v~~~~~~~~~~~~~~Gev~va~~~s~~~~~~~--~~~~~v~~~~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~ 152 (273)
++++ ++..+.++++.+.|++||++++++|+|++..++ ..+.+++|++|+||+.+|+|+|+|||+++|++
T Consensus 212 ~~kp~~~~~~~~~~~~~~l~~Gev~~a~~w~g~~~~~~~~~~~~~i~~~~p~eG~~~w~D~~~ipk~a~n~~-------- 283 (363)
T COG0687 212 KLKPVNVYWFDGSQYVQLLANGEVVLAMGWSGDAAAAKAAKNGAPIEFVIPKEGSILWFDNLAIPKGAKNVD-------- 283 (363)
T ss_pred HhCcccEEEecchHHHHHHhcCCEEEEEEeChHHHHHHHhhcCCceEEEcCCCCceeeeEeeeeeCCCCCHH--------
Confidence 9999 666667789999999999999999999999985 67788999999999999999999999999998
Q ss_pred CChHHHHHHHHHHhcHHHhchhhhhhcCCCCCChhhhhccCCChHHhcCCCCCCCCcccCCCCHHHHhhceeccCCCHHH
Q 024047 153 GPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALETTLVKLPEELLKGKPSQDTNLIVGVPPAEILARCEFLEPLSEAT 232 (273)
Q Consensus 153 ~~~~~A~~FInfllspe~q~~~~~~~~~~~~p~~~~~a~~~l~~e~~~~~~~~~~~l~~~~p~~~~l~~~~~~~~~~~~~ 232 (273)
+||+|||||++||+|+.+++ .++|+++| ..+..+++++....+ ..+|+.+.+.+......+.++.
T Consensus 284 ----~A~~fInf~~~pe~~a~~~~-~~~y~~~n--~~a~~~~~~~~~~~~--------~~~p~~~~~~~~~~~~~~~~~~ 348 (363)
T COG0687 284 ----AAYKFINFLLDPEVAAKLAE-FVGYAPPN--KAARKLLPKEIKDDP--------AIYPTAEILKKLFGQKDLGPEA 348 (363)
T ss_pred ----HHHHHHHHhhCHHHHHHHHH-hccCCCCC--HHHHHhCcHhhhcCc--------ccCCCHHHhhcccchhhccHHH
Confidence 99999999999999999995 67887777 466666777666643 4589988888888888877777
Q ss_pred HHHHHHHHHHhhC
Q 024047 233 LSDYEWLVADLQK 245 (273)
Q Consensus 233 ~~~~~~~W~~ik~ 245 (273)
.+.|++.|++++.
T Consensus 349 ~~~~~~~~~~~~~ 361 (363)
T COG0687 349 LRLYTKAWQEIKA 361 (363)
T ss_pred HHHHHHHHHHHhc
Confidence 8999999999875
No 3
>PRK10682 putrescine transporter subunit: periplasmic-binding component of ABC superfamily; Provisional
Probab=100.00 E-value=1.9e-34 Score=270.67 Aligned_cols=217 Identities=24% Similarity=0.385 Sum_probs=186.0
Q ss_pred CEEEEeCcccccc-CCC-CCCChHHhcCcccCCc-----EEeeCChHHHHHHHHHHhCCCCCCCChhhhhhchH-HHHHH
Q 024047 1 MVIAYKKSKFRKH-NLA-PIEDWKDLWRPELAGR-----ISMVNSPREVIGSVLKYMGASYNSNNIDLQVAGGK-ISVQQ 72 (273)
Q Consensus 1 ~gi~YN~~~v~~~-g~~-~p~SW~dL~dp~~kGk-----i~~~d~~~~~~~~al~~~G~~~~~~~~~~~~~~~~-~~~~~ 72 (273)
+||+||++++++. |+. ||+||++||+|+++++ +++.+.+.+++..++.++|.+.++.+++ .+ +++.+
T Consensus 138 ~~l~YN~~~~~~~~G~~~pp~sW~dl~~p~~~~~l~~~g~~~~~~~~~~~~~~l~~~G~~~~~~~~~-----~~~~~a~~ 212 (370)
T PRK10682 138 TGIGYNVDKVKAVLGEDAPVDSWDLVLKPENLEKLKSCGVSFLDAPEEIFATVLNYLGKDPNSTKAD-----DYTGPATD 212 (370)
T ss_pred eEEEEehHHhcccccCCCCCCCHHHHhCchhhhhhcCCeEEEeCCHHHHHHHHHHHcCCCCCCCCHH-----HHHHHHHH
Confidence 4899999999763 553 6799999999976654 7888888888888889999988776654 23 37889
Q ss_pred HHHHHhcccccccchhHHHHhhcCcEEEEEeccccHHHHH------hcCCCcEEEecCCCceeeeeeEEEecCCCCcccc
Q 024047 73 NLALLANQARLFDSTHYLKAFGIGDVWVAVGWSSDVLPAV------KRMSNVAVVVPKSGASLWADLWAIPAASRLETKQ 146 (273)
Q Consensus 73 ~L~~l~~~v~~~~~~~~~~~~~~Gev~va~~~s~~~~~~~------~~~~~v~~~~P~eG~~~~~d~~~I~k~a~~~~~~ 146 (273)
+|.+++++++.|++++..+.|.+||++++++|++++..++ +.+.+++|++|+||+.+|.|+++|+|+++|++
T Consensus 213 ~l~~l~~~v~~~~~~~~~~~l~~Gev~~~~~w~~~~~~~~~~~~~~~~~~~i~~v~P~eG~~~~~d~~~I~k~a~~~e-- 290 (370)
T PRK10682 213 LLLKLRPNIRYFHSSQYINDLANGDICVAIGWAGDVWQASNRAKEAKNGVNVSYSIPKEGALAFFDVFAMPADAKNKD-- 290 (370)
T ss_pred HHHHhchhhEEEcCcHHHHHHhcCCEEEEEeecHHHHHHHHHHHhcccCCceEEEECCCcchhheeeeEEECCCCCHH--
Confidence 9999999987776667778999999999999999987653 45778999999999999999999999999998
Q ss_pred cCCCCCCChHHHHHHHHHHhcHHHhchhhhhhcCCCCCChhhhhccCCChHHhcCCCCCCCCcccCCCCHHHHhhceecc
Q 024047 147 IGGRVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALETTLVKLPEELLKGKPSQDTNLIVGVPPAEILARCEFLE 226 (273)
Q Consensus 147 ~~~~~~~~~~~A~~FInfllspe~q~~~~~~~~~~~~p~~~~~a~~~l~~e~~~~~~~~~~~l~~~~p~~~~l~~~~~~~ 226 (273)
+|++|||||++||+|+.+++ ..+|++++ ..+.+.+++++++++ .++|+.+.+.+++++.
T Consensus 291 ----------~A~~Fi~f~lspe~qa~~a~-~~~y~p~~--~~a~~~~~~~~~~~p--------~~~~~~~~~~~~~~~~ 349 (370)
T PRK10682 291 ----------EAYQFLNYLLRPDVIAHISD-HVFYANAN--KAATPLVSAEVRDNP--------GIYPPADVRAKLFTLK 349 (370)
T ss_pred ----------HHHHHHHHHhCHHHHHHHHH-HhCCCCcc--HHHHHhcCHHHhcCC--------CcCCCHHHHhCcEEec
Confidence 99999999999999999995 67887776 467777999998764 3589999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhC
Q 024047 227 PLSEATLSDYEWLVADLQK 245 (273)
Q Consensus 227 ~~~~~~~~~~~~~W~~ik~ 245 (273)
.++++.++.|+++|++||+
T Consensus 350 ~~~~~~~~~~~~~w~~~~~ 368 (370)
T PRK10682 350 VQDPKIDRVRTRAWTKVKS 368 (370)
T ss_pred CCCHHHHHHHHHHHHHHHc
Confidence 9998888999999999995
No 4
>TIGR03261 phnS2 putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein. This ABC transporter extracellular solute-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.93 E-value=8.7e-25 Score=202.43 Aligned_cols=149 Identities=20% Similarity=0.322 Sum_probs=126.0
Q ss_pred CEEEEeCccccccCCCCCCChHHhcCcccCCcEEeeCChHHHHHHH-----HHHhCCCCCCCChhhhhhchHHHHHHHHH
Q 024047 1 MVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSV-----LKYMGASYNSNNIDLQVAGGKISVQQNLA 75 (273)
Q Consensus 1 ~gi~YN~~~v~~~g~~~p~SW~dL~dp~~kGki~~~d~~~~~~~~a-----l~~~G~~~~~~~~~~~~~~~~~~~~~~L~ 75 (273)
+||+||++++++.|+.+|+||+||++|+|+|||+|.|+.....+.. +...| .++++++|.
T Consensus 126 ~~~~yN~~~~~~~g~~~P~sw~dL~~p~~~g~i~~~dp~~s~~~~~~~~~~~~~~G---------------~~~~~~~l~ 190 (334)
T TIGR03261 126 AAICFNTVEAKKKGLPKPTSWEDLTKPEYKGHIVMPNPASSGTGFLDVSAWLQMMG---------------EDKGWDYMD 190 (334)
T ss_pred EEEEEehHHHHhcCCCCCCChHHhcCHHhcCCEecCCCccchHHHHHHHHHHHHhC---------------hHHHHHHHH
Confidence 4799999999877777899999999999999999998543322211 12222 246788999
Q ss_pred HHhcccccccc--hhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEEecCCCceeeeeeEEEecCCCCcccccCCCCCC
Q 024047 76 LLANQARLFDS--THYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRG 153 (273)
Q Consensus 76 ~l~~~v~~~~~--~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~ 153 (273)
++++|+..++. ++..+.+.+||+.++++|++++...+.+|.++++++|+||+..++++++|+|+++|++
T Consensus 191 ~l~~n~~~~~~s~~~~~~~v~~Ge~~i~~~~~~~~~~~~~~g~~v~~~~P~eG~~~~~~~~ai~k~a~~~e--------- 261 (334)
T TIGR03261 191 KLHKNIAVYTHSGSKPCKLAGMGEFPIGISMAYRALKEKKKGAPIDVVFPKEGLGWDIEATAIIKGSKNND--------- 261 (334)
T ss_pred HHHhccCccCCCChHHHHHHhCCCceEEEEecHHHHHHHhCCCCeEEEecCCCCeeeeeeeEEEcCCCCHH---------
Confidence 99999877763 4677889999999999999998888888999999999999999999999999999998
Q ss_pred ChHHHHHHHHHHhcHHHhchhhh
Q 024047 154 PSPLIHQWIEFCLQTARALPFKQ 176 (273)
Q Consensus 154 ~~~~A~~FInfllspe~q~~~~~ 176 (273)
+|++||||++|||.|..+.+
T Consensus 262 ---~A~~fidfllS~e~Q~~~~~ 281 (334)
T TIGR03261 262 ---AAKKLVDWSISDEAMELYAK 281 (334)
T ss_pred ---HHHHHHHHHcCHHHHHHHHh
Confidence 89999999999999999864
No 5
>PF13343 SBP_bac_6: Bacterial extracellular solute-binding protein; PDB: 2QRY_D 1XVX_A 1SI1_A 1SI0_A 1Q35_A 1Y9U_A 2OWS_A 2OWT_A 2VP1_A 2VOZ_A ....
Probab=99.91 E-value=3e-24 Score=189.73 Aligned_cols=151 Identities=23% Similarity=0.376 Sum_probs=125.0
Q ss_pred CEEEEeCccccccCCCCCCChHHhcCcccCCcEEeeCChHHHHHHHHHHhCCCCCCCChhhhhhchHHHHHHHHHHHhcc
Q 024047 1 MVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNIDLQVAGGKISVQQNLALLANQ 80 (273)
Q Consensus 1 ~gi~YN~~~v~~~g~~~p~SW~dL~dp~~kGki~~~d~~~~~~~~al~~~G~~~~~~~~~~~~~~~~~~~~~~L~~l~~~ 80 (273)
++|+||++++++.++ |+||+||++|+|+|+|++.++........+..+.. . .+.+++.++|++++.+
T Consensus 57 ~~i~yN~~~~~~~~~--P~sw~dL~~p~~~g~i~~~~~~~~~~~~~~~~~~~-------~----~g~~~~~~~l~~l~~n 123 (242)
T PF13343_consen 57 VVIAYNTDKLKERDL--PTSWADLLDPKYKGKIALPDPNSDTGLAFLLALAE-------A----YGEDAGWEWLRELKAN 123 (242)
T ss_dssp EEEEEETTTSSSGGT--TSSGGGGGSGGGTTTEEEETTTSHHHHHHHHHHHH-------H----HHHHHHHHHHHHHHHC
T ss_pred EEEEEEhhhcCCCCC--CccHHHHHHHHhCCCEEECCccHHHHHHHHHHHHH-------H----hhHHHHHHHHHHHHhh
Confidence 479999999986432 89999999999999999999664333333333322 1 1457889999999998
Q ss_pred cccccchhHHHHhhcCc--EEEEEeccccHHHHHhcCCCcEEEecCCCceeeeeeEEEecCCCCcccccCCCCCCChHHH
Q 024047 81 ARLFDSTHYLKAFGIGD--VWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPSPLI 158 (273)
Q Consensus 81 v~~~~~~~~~~~~~~Ge--v~va~~~s~~~~~~~~~~~~v~~~~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A 158 (273)
...+.+.+..+.+.+|| +.+++.|.+........+ ++++++|+||+.+|+++++|+++++|++ +|
T Consensus 124 ~~~~~~~~~~~~~~~Ge~~~~i~~~~~~~~~~~~~~~-~i~~v~P~eG~~~~~~~~~i~k~a~~~~------------~A 190 (242)
T PF13343_consen 124 GATFSSSQAAQAVASGEGAVAIGISWYSRAAQAKEKG-PIKFVYPEEGTVVWPDGIAIVKGAPNPE------------AA 190 (242)
T ss_dssp BSSSCHHHHHHHHHTTSCSEEEEEHHHHHHHHHCTTT-TEEEE-TTTGBEEEEEEEEEBTT-STHH------------HH
T ss_pred cccccchhhhhHhhCCCceEEEEEehHHHHHHhhhcC-CeEEEecCCCcEEEEEEEEEeCCCCCHH------------HH
Confidence 87777668899999999 888888888888877777 9999999999999999999999999998 99
Q ss_pred HHHHHHHhcHHHhchhhhh
Q 024047 159 HQWIEFCLQTARALPFKQE 177 (273)
Q Consensus 159 ~~FInfllspe~q~~~~~~ 177 (273)
++|||||+|||+|..+...
T Consensus 191 ~~fi~~lls~e~q~~~~~~ 209 (242)
T PF13343_consen 191 KKFINFLLSPEAQKILAQA 209 (242)
T ss_dssp HHHHHHHTSHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHh
Confidence 9999999999999999853
No 6
>PRK11622 hypothetical protein; Provisional
Probab=99.90 E-value=1.2e-22 Score=193.18 Aligned_cols=217 Identities=16% Similarity=0.140 Sum_probs=146.2
Q ss_pred CEEEEeCccccccCCCCCCChHHhcC--cccCCcEEeeCCh---HHH-HHHHHHHh-CCCC---CCCChhhhhhchHHHH
Q 024047 1 MVIAYKKSKFRKHNLAPIEDWKDLWR--PELAGRISMVNSP---REV-IGSVLKYM-GASY---NSNNIDLQVAGGKISV 70 (273)
Q Consensus 1 ~gi~YN~~~v~~~g~~~p~SW~dL~d--p~~kGki~~~d~~---~~~-~~~al~~~-G~~~---~~~~~~~~~~~~~~~~ 70 (273)
++|+||+++|++ +|+||+||++ ++++||+++.+++ ... +..++... |... ...+.+ .+....+.+
T Consensus 159 ~~l~YN~d~~~~----~P~Sw~dL~~~~~~~~Gk~~~~~p~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~ 233 (401)
T PRK11622 159 LVFIYDSARTPQ----PPQSPAELLEWAKANPGRFTYPRPPDFTGTAFLKQLLYELTGDPAALKQPVDKA-TFARVTAPL 233 (401)
T ss_pred EEEEEchHhcCC----CCCCHHHHHHHHHHCCCcEecCCCCCCchhHHHHHHHHHhcCChHhhcCCCCHH-HHHHhhhHH
Confidence 479999999975 8999999998 7999999997643 111 11222222 3311 011211 122245678
Q ss_pred HHHHHHHhccc----ccccc--hhHHHHhhcCcEEEEEecccc-HHHHHhcCC---CcEEEecCCCceeeeeeEEEecCC
Q 024047 71 QQNLALLANQA----RLFDS--THYLKAFGIGDVWVAVGWSSD-VLPAVKRMS---NVAVVVPKSGASLWADLWAIPAAS 140 (273)
Q Consensus 71 ~~~L~~l~~~v----~~~~~--~~~~~~~~~Gev~va~~~s~~-~~~~~~~~~---~v~~~~P~eG~~~~~d~~~I~k~a 140 (273)
+++|.++++++ +.|.. .+..++|.+||+.|+++|++. +...+.+|. ++++++|++|+..++++++||+++
T Consensus 234 ~~~L~~L~~~~~~~g~~~~~~~~~~~~~~~~GEv~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~G~~~~~~~~~Ipk~a 313 (401)
T PRK11622 234 WDYLDELHPYLWREGKTFPASPAELDQLLADGELDLAMTFNPNHAQSKIANGELPASTRSFVFDDGTIGNTHFVAIPFNA 313 (401)
T ss_pred HHHHHHhCHHHHhccccCCCChHHHHHHHHCCCeEEEEecChHHHHHHHhcCCCCCceeEEcCCCCeeccceeEEeeCCC
Confidence 89999999875 44543 356899999999999999875 444456663 588889999999999999999999
Q ss_pred CCcccccCCCCCCChHHHHHHHHHHhcHHHhchhhhh-hcCCCCCChhhhhccCCChHHhcCCCCCCCCcccCCCCHHHH
Q 024047 141 RLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQE-VIPGASPSALETTLVKLPEELLKGKPSQDTNLIVGVPPAEIL 219 (273)
Q Consensus 141 ~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~~-~~~~~~p~~~~~a~~~l~~e~~~~~~~~~~~l~~~~p~~~~l 219 (273)
+|++ +|++||||++|||.|..+++. .+++.+++. ...||++++++.....+.- ... +++.+
T Consensus 314 ~n~~------------~A~~finfllS~e~Q~~~~~~~~~g~~P~~~----~~~l~~e~~~~~~~~~~~~-~~~-~~~~~ 375 (401)
T PRK11622 314 NAKA------------GAKVVANFLLSPEAQLRKADPAVWGDPSVLD----PQKLPEEQRAAFAALDLGA-ATL-QPELL 375 (401)
T ss_pred CCHH------------HHHHHHHHHcCHHHHHHhcchhhcCCCCcCC----hhhCCHHHHHHHhcccccc-ccC-ChhHh
Confidence 9998 999999999999999998752 245543332 3479999876432111110 112 44555
Q ss_pred hhceeccCCCHHHHHHHHHHHHH
Q 024047 220 ARCEFLEPLSEATLSDYEWLVAD 242 (273)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~W~~ 242 (273)
.+.. ..++.+......+.|.+
T Consensus 376 ~~~~--~~~~~~~~~~~~~~w~~ 396 (401)
T PRK11622 376 PPAL--PEPHASWVEALEQEWQR 396 (401)
T ss_pred cccC--CCCChHHHHHHHHHHHH
Confidence 5533 23344455566666654
No 7
>TIGR03227 PhnS 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate binding protein. This ABC transporter periplasmic substrate binding protein component is found in a region of the salmonella typhimurium LT2 genome responsible for the catabolism of 2-aminoethylphosphonate via the phnWX pathway (GenProp0238). The protein contains a match to pfam01547 for the "Bacterial extracellular solute-binding protein" domain.
Probab=99.89 E-value=8.7e-23 Score=191.86 Aligned_cols=151 Identities=13% Similarity=0.149 Sum_probs=111.7
Q ss_pred CEEEEeCccccccCCCCCCChHHhcCcccCCcEEeeCChHHHHHHHHHHhCCCCCCCChhhhhhchHHHHHHHHHHHhcc
Q 024047 1 MVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNIDLQVAGGKISVQQNLALLANQ 80 (273)
Q Consensus 1 ~gi~YN~~~v~~~g~~~p~SW~dL~dp~~kGki~~~d~~~~~~~~al~~~G~~~~~~~~~~~~~~~~~~~~~~L~~l~~~ 80 (273)
+||+||++++++ +|+||+|||+|+|+|||++.++.....+..+...+...... .++++++|.+++++
T Consensus 141 ~~i~YN~d~~~~----~P~sw~DL~~p~~~Gki~~~~p~~s~~~~~~l~~~~~~~G~---------~d~a~~~l~~l~~n 207 (367)
T TIGR03227 141 FSFAINPKLLKS----APASFADLLDADFKGKLAYSNPAQAADGMAVIILAFALFGS---------EDAAFAYLAKLEAN 207 (367)
T ss_pred eEEEEchhhcCC----CCCCHHHHhChhccCCEeecCCCcCccHHHHHHHHHHHcCC---------chHHHHHHHHHHhc
Confidence 389999999975 89999999999999999998854333322221111110000 12578899999998
Q ss_pred cccccc--hhHHHHhhcCcEEEEEecccc-HHHHHhcCCCcEEEecCCC------ceeeeeeEEEecCCCCcccccCCCC
Q 024047 81 ARLFDS--THYLKAFGIGDVWVAVGWSSD-VLPAVKRMSNVAVVVPKSG------ASLWADLWAIPAASRLETKQIGGRV 151 (273)
Q Consensus 81 v~~~~~--~~~~~~~~~Gev~va~~~s~~-~~~~~~~~~~v~~~~P~eG------~~~~~d~~~I~k~a~~~~~~~~~~~ 151 (273)
+..+.+ ....++|.+||+.++.++... .......|.++++++|++| +..+.++++|+++++|++
T Consensus 208 ~~~~~~~~~~~~~~~~~Gev~i~~g~~~~~~~~~~~~g~~i~~~~P~~g~g~~~~~~~~~~~~~I~k~a~n~e------- 280 (367)
T TIGR03227 208 NKFHSAGTGKLNALLNKGEIAVANGDLQMDLADAEHGGLNIKIFFPAADAGEPPSAFAIPYAIGLVKGAPNQD------- 280 (367)
T ss_pred CCccCCCchhHHHHHhcCceEEEccHHHHHHHHHHhcCCCeEEEeecCCCCCCCcccccceeEEEecCCCCHH-------
Confidence 876653 345678999999987543322 2233445779999999975 456678999999999998
Q ss_pred CCChHHHHHHHHHHhcHHHhchhhh
Q 024047 152 RGPSPLIHQWIEFCLQTARALPFKQ 176 (273)
Q Consensus 152 ~~~~~~A~~FInfllspe~q~~~~~ 176 (273)
+|++||||++|||+|+.+++
T Consensus 281 -----~A~~Fidfllspe~Q~~~a~ 300 (367)
T TIGR03227 281 -----AGKKLIDFLLSADAQAKVPD 300 (367)
T ss_pred -----HHHHHHHHHcCHHHHHHHHh
Confidence 99999999999999999975
No 8
>TIGR01276 thiB thiamine ABC transporter, periplasmic binding protein. This model finds the thiamine (and thiamine pyrophosphate) ABC transporter periplasmic binding protein ThiB in proteobacteria. Completed genomes having this protein (E. coli, Vibrio cholera, Haemophilus influenzae) also have the permease ThiP, described by TIGRFAMs equivalog model TIGR01253.
Probab=99.88 E-value=4.9e-22 Score=181.92 Aligned_cols=152 Identities=17% Similarity=0.146 Sum_probs=110.1
Q ss_pred CEEEEeCccccccCCCCCCChHHhcCcccCCcEEeeCChHHHHHHHHHHhCCCCCCCChhhhhhchHHHHHHHHHHHhcc
Q 024047 1 MVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNIDLQVAGGKISVQQNLALLANQ 80 (273)
Q Consensus 1 ~gi~YN~~~v~~~g~~~p~SW~dL~dp~~kGki~~~d~~~~~~~~al~~~G~~~~~~~~~~~~~~~~~~~~~~L~~l~~~ 80 (273)
+||+||++.+++ +|+||+||++++++|||+|.++....++.++...-..... + +..++++.|.+.+..
T Consensus 107 ~~i~yn~~~~~~----~P~sw~DL~~~~~~g~i~~~~p~~s~~g~~~~~~~~~~~g---~-----~~~~~~~~L~~~~~~ 174 (309)
T TIGR01276 107 FAFVYDKNKLKN----PPQSLKELVESDQNWRVIYQDPRTSTPGLGLLLWMQKVYG---D-----DAPQAWQKLAKKTVT 174 (309)
T ss_pred EEEEECccccCC----CCCCHHHHhccccCCeEEeeCCCCCcHHHHHHHHHHHHcC---c-----cHHHHHHHHHHcCce
Confidence 479999999974 7999999999999999999886544444332211110001 1 122444545433322
Q ss_pred cccccchhHHHHhhcCcEEEEEeccccHHHH--HhcCCCcEEEecCCCceeeeeeEEEecCCCCcccccCCCCCCChHHH
Q 024047 81 ARLFDSTHYLKAFGIGDVWVAVGWSSDVLPA--VKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPSPLI 158 (273)
Q Consensus 81 v~~~~~~~~~~~~~~Gev~va~~~s~~~~~~--~~~~~~v~~~~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A 158 (273)
+... .++...+|.+||++|+++|+++.... ...+.++.+++|+||+..|+++++|+|+++|++ +|
T Consensus 175 ~~~~-~~~~~~~~~~Ge~~i~i~~~~~~~~~~~~~~~~~~~~~~~~eG~~~~~~~~ai~k~a~n~e------------~A 241 (309)
T TIGR01276 175 VTKG-WSEAYGLFLKGESDLVLSYTTSPAYHILEEKKDNYAAANFSEGHYLQVEVAARTAASKQPE------------LA 241 (309)
T ss_pred eCCC-hHHHHHHHHcCCcCEEEecCCcHHHHhhcccCcccceEecCCCCEeEEEEEEEeCCCCCHH------------HH
Confidence 2111 24566799999999999998876432 233457888899999999999999999999998 89
Q ss_pred HHHHHHHhcHHHhchhhhh
Q 024047 159 HQWIEFCLQTARALPFKQE 177 (273)
Q Consensus 159 ~~FInfllspe~q~~~~~~ 177 (273)
++|||||+|||+|..++..
T Consensus 242 ~~Fidflls~e~Q~~~~~~ 260 (309)
T TIGR01276 242 QKFLQFLVSPAFQNAIPTG 260 (309)
T ss_pred HHHHHHHcCHHHHHHHHhh
Confidence 9999999999999988743
No 9
>PRK11205 tbpA thiamine transporter substrate binding subunit; Provisional
Probab=99.87 E-value=1.5e-21 Score=180.42 Aligned_cols=150 Identities=17% Similarity=0.190 Sum_probs=110.4
Q ss_pred CEEEEeCccccccCCCCCCChHHhcCcccCCcEEeeCChHHHHHHHHHHhCCCCCCCChhhhhhchHHHHHHHHHHHhcc
Q 024047 1 MVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNIDLQVAGGKISVQQNLALLANQ 80 (273)
Q Consensus 1 ~gi~YN~~~v~~~g~~~p~SW~dL~dp~~kGki~~~d~~~~~~~~al~~~G~~~~~~~~~~~~~~~~~~~~~~L~~l~~~ 80 (273)
+||+||++++++ +|+||+||++|+|+|||++.|+.....+.++......... + ...+.+.+++++
T Consensus 128 ~~l~yn~~~~~~----~P~sw~DL~~~~~~g~i~~~dp~~s~~~~~~~~~~~~~~g---~--------~~~~~~~~L~~~ 192 (330)
T PRK11205 128 FAFVYDKEKLKN----PPKSLKELVESDQNWKVIYQDPRTSTPGLGLLLWMKKVYG---D--------DAPQAWQKLAKK 192 (330)
T ss_pred EEEEEcccccCC----CCCCHHHHhChhhcCCEEecCCCCCcHHHHHHHHHHHhcC---c--------hHHHHHHHHHhC
Confidence 479999999975 8999999999999999999875433323222211111000 0 122344556655
Q ss_pred ccccc--chhHHHHhhcCcEEEEEecccc-HHHHHhc-CCCcEEEecCCCceeeeeeEEEecCCCCcccccCCCCCCChH
Q 024047 81 ARLFD--STHYLKAFGIGDVWVAVGWSSD-VLPAVKR-MSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPSP 156 (273)
Q Consensus 81 v~~~~--~~~~~~~~~~Gev~va~~~s~~-~~~~~~~-~~~v~~~~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~ 156 (273)
...+. .++..+.|.+||++++++|+++ +.....+ +.++.+++|++|...|+++++|+++++|++
T Consensus 193 ~~~~~~~~~~~~~~~~~Ge~~~~i~~~~~~~~~~~~~~~~~~~~~~~~eG~~~~~~~~ai~k~a~n~e------------ 260 (330)
T PRK11205 193 TVTVTKGWSEAYGLFLKGEADLVLSYTTSPAYHIIAEKKDNYAAANFSEGHYLQVEVAARTAASKQPE------------ 260 (330)
T ss_pred CeeeCCChHHHHHHHHcCCccEEEeCCCcHHHHHhhccCCceeEEEcCCCCeEEEEEEEEeCCCCCHH------------
Confidence 54433 2466789999999999999875 3444444 447888889999999999999999999998
Q ss_pred HHHHHHHHHhcHHHhchhhhh
Q 024047 157 LIHQWIEFCLQTARALPFKQE 177 (273)
Q Consensus 157 ~A~~FInfllspe~q~~~~~~ 177 (273)
+|++|||||+|||+|+.++..
T Consensus 261 ~A~~Fi~fllS~e~Q~~~~~~ 281 (330)
T PRK11205 261 LAQKFLQFMVSPAFQNAIPTG 281 (330)
T ss_pred HHHHHHHHHcCHHHHHHhhhh
Confidence 999999999999999998753
No 10
>TIGR01254 sfuA ABC transporter periplasmic binding protein, thiB subfamily. The model describes thiamine ABC transporter, periplasmic protein in bacteria and archae. The protein belongs to the larger ABC transport system. It consists of at least three components: the thiamine binding periplasmic protein; an inner membrane permease; an ATP-binding subunit. It has been experimentally demonstrated that the mutants in the various steps in the de novo synthesis of the thiamine and the biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate (TMP) or thiamine pyrophosphate (TPP).
Probab=99.86 E-value=1.8e-21 Score=177.93 Aligned_cols=151 Identities=16% Similarity=0.150 Sum_probs=113.9
Q ss_pred CEEEEeCccccccCCCCCCChHHhcCcccCCcEEeeCChHHHHHHHHHHhCCCCCCCChhhhhhchHHHHHHHHHHHhcc
Q 024047 1 MVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNIDLQVAGGKISVQQNLALLANQ 80 (273)
Q Consensus 1 ~gi~YN~~~v~~~g~~~p~SW~dL~dp~~kGki~~~d~~~~~~~~al~~~G~~~~~~~~~~~~~~~~~~~~~~L~~l~~~ 80 (273)
++|+||++++++ +|+||+||++++++|||+|.++.....+.++......... .+.+.+++.+++++
T Consensus 107 ~~i~yn~~~~~~----~P~sw~dL~~~~~~g~i~~~~p~~~~~~~~~~~~~~~~~g----------~~~~~~~~~~L~~~ 172 (304)
T TIGR01254 107 VAFVYDKNKLQN----PPQSLKELVEPEQDLLVIYQDPRTSSPGLGLLLWMQSVYG----------EDDAPQAWKQLRKK 172 (304)
T ss_pred EEEEEchHHhcC----CCCCHHHHhCHHhcCcEEecCCCCChhHHHHHHHHHHhcC----------hHHHHHHHHHHHhC
Confidence 479999999975 7999999999999999999885544444443322221111 12344556666544
Q ss_pred c-cccc-chhHHHHhhcCcEEEEEeccccH-H-HHHhcCCCcEEEecCCCceeeeeeEEEecCCCCcccccCCCCCCChH
Q 024047 81 A-RLFD-STHYLKAFGIGDVWVAVGWSSDV-L-PAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPSP 156 (273)
Q Consensus 81 v-~~~~-~~~~~~~~~~Gev~va~~~s~~~-~-~~~~~~~~v~~~~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~ 156 (273)
. ..+. ..+....|.+||+.|+++|+++. . ....++.++.+++|++|...|+++++|+++++|++
T Consensus 173 ~~~~~~~~~~~~~~~~~Ge~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ai~k~a~n~e------------ 240 (304)
T TIGR01254 173 TVTVTKGWSEAYGTFLGGEYDLVLSYATSPAYHVLFEKKDNYAALNFSEGHYLQVEGAARLKGAKQPE------------ 240 (304)
T ss_pred CeecCCCCHHHHHHHhcCCccEEEEeccchhhhhhhccCCceeEEecCCCCEEEEEEEEEECCCCCHH------------
Confidence 2 2222 24556789999999999998874 3 23445678999999999999999999999999998
Q ss_pred HHHHHHHHHhcHHHhchhhhh
Q 024047 157 LIHQWIEFCLQTARALPFKQE 177 (273)
Q Consensus 157 ~A~~FInfllspe~q~~~~~~ 177 (273)
+|++|||||+|||+|+.+++.
T Consensus 241 ~A~~fi~fllspe~q~~~a~~ 261 (304)
T TIGR01254 241 LADKFVQFLLSPAVQNAIPTG 261 (304)
T ss_pred HHHHHHHHHcCHHHHHHHHhc
Confidence 999999999999999998853
No 11
>PRK15046 2-aminoethylphosphonate ABC transporter substrate-binding protein; Provisional
Probab=99.80 E-value=1.9e-19 Score=167.97 Aligned_cols=150 Identities=16% Similarity=0.189 Sum_probs=108.8
Q ss_pred CEEEEeCccccccCCCCCCChHHhcCcccCCcEEeeCChHHHHHHHHHHhCCCCCCCChhhhhhchHHHHHHHHHHHhcc
Q 024047 1 MVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNIDLQVAGGKISVQQNLALLANQ 80 (273)
Q Consensus 1 ~gi~YN~~~v~~~g~~~p~SW~dL~dp~~kGki~~~d~~~~~~~~al~~~G~~~~~~~~~~~~~~~~~~~~~~L~~l~~~ 80 (273)
+||+||++++++ +|+||+||++++|+|||++.+......+..+........ +.++++++|.+++++
T Consensus 136 ~~l~Yn~~~~~~----~P~sw~dL~~~~~~gki~~~~p~~s~~g~~~~~~~~~~~----------G~~~a~~~l~~l~~~ 201 (349)
T PRK15046 136 LSFIYNPKVLKT----APATWADLLDPKFKGKLQYSTPGQAGDGTAVLLLTFHLM----------GKDKAFDYLAKLQAN 201 (349)
T ss_pred eEEEEchhhccC----CCCCHHHHhCHHhCCCEEecCCCcCccHHHHHHHHHHHh----------CchHHHHHHHHHHHh
Confidence 379999999975 899999999999999999987543222222111111100 123567888888887
Q ss_pred cccccc--hhHHHHhhcCcEEEEEeccccH-HHHHhcCCCcEEEecCC--C---ceeeeeeEEEecCCCCcccccCCCCC
Q 024047 81 ARLFDS--THYLKAFGIGDVWVAVGWSSDV-LPAVKRMSNVAVVVPKS--G---ASLWADLWAIPAASRLETKQIGGRVR 152 (273)
Q Consensus 81 v~~~~~--~~~~~~~~~Gev~va~~~s~~~-~~~~~~~~~v~~~~P~e--G---~~~~~d~~~I~k~a~~~~~~~~~~~~ 152 (273)
...+.+ ....+.+.+|++.++.++.... ...++.+.++++++|++ | +...+++++|+++++|++
T Consensus 202 ~~~~~~~~~~~~~~~~~Ge~~~~~g~~~~~~~~~~~~~~~~~~~~P~~~~g~~~~~~~~~~~aI~~~s~n~~-------- 273 (349)
T PRK15046 202 NVGPSKSTGKLTPLVSKGEIYVANGDLQMNLAQAEHGGPNVKIFFPAKDGGERSTFALPYVIGLVKGAPNSE-------- 273 (349)
T ss_pred CCCCCCCcchhhHHhhcCceEEeccHHHHHHHHHhcCCCceEEEecCCCCCCcceeeccceeEEecCCCCHH--------
Confidence 655543 2456889999999875432222 23345578899999986 3 455667899999999998
Q ss_pred CChHHHHHHHHHHhcHHHhchhhh
Q 024047 153 GPSPLIHQWIEFCLQTARALPFKQ 176 (273)
Q Consensus 153 ~~~~~A~~FInfllspe~q~~~~~ 176 (273)
+|++||||++|||+|..+++
T Consensus 274 ----~A~~Fi~fllS~e~Q~~~a~ 293 (349)
T PRK15046 274 ----NGKKLIDFLLSKEAQTKVSD 293 (349)
T ss_pred ----HHHHHHHHHhCHHHHHHHHh
Confidence 99999999999999999885
No 12
>PF13416 SBP_bac_8: Bacterial extracellular solute-binding protein; PDB: 2FNC_A 1ELJ_A 3TTM_B 3TTK_C 2W7Y_A 3RPW_A 2GHB_C 2GHA_A 1POY_3 1POT_A ....
Probab=99.76 E-value=5.9e-18 Score=151.18 Aligned_cols=177 Identities=18% Similarity=0.261 Sum_probs=139.0
Q ss_pred EEEEeCccccccCCCCCCChHHhcC--cccCCcEEeeCChHHHHHHHHHHhCCCCCCC-ChhhhhhchHHHHHHHHHHHh
Q 024047 2 VIAYKKSKFRKHNLAPIEDWKDLWR--PELAGRISMVNSPREVIGSVLKYMGASYNSN-NIDLQVAGGKISVQQNLALLA 78 (273)
Q Consensus 2 gi~YN~~~v~~~g~~~p~SW~dL~d--p~~kGki~~~d~~~~~~~~al~~~G~~~~~~-~~~~~~~~~~~~~~~~L~~l~ 78 (273)
++.||+++++++ +|+||++|++ ++++|++++.+........++.+.|...+.. +.+ ++.++.+.+.++.
T Consensus 96 ~~~yn~d~~~~~---~p~t~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-----~~~~~~~~~~~l~ 167 (281)
T PF13416_consen 96 GLYYNKDLLKKA---PPKTWDELLEVAKKLKGKYGFPDPASGWMQWALIAGGKSFDDDGTSE-----NFVEALEFLKELY 167 (281)
T ss_dssp EEEEETTTHSHS---GTSSHHHHHHHHHHHTTHEEEESCHHHHHHHHHHHTTSECTEETTSH-----HHHHHHHHHHHHH
T ss_pred EEEEchhhcccC---CcccHHHHhhhHHHhcccccccccchhHhhhhhhccCCchhcccCCH-----HHHHHHHHHHHHH
Confidence 789999999973 8999999999 8999999998876654444445555544322 122 3578899999998
Q ss_pred cccccccc-hhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEEecCCCceeeeeeEEEecCCCCcccccCCCCCCChHH
Q 024047 79 NQARLFDS-THYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPSPL 157 (273)
Q Consensus 79 ~~v~~~~~-~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~ 157 (273)
+....+.+ .+..+.|.+|++.+.++|+.....+++.+.++++++|++|+..+.++++|+++++|++ .++
T Consensus 168 ~~~~~~~~~~~~~~~f~~G~~~~~~~~~~~~~~~~~~~~~~~~~~P~~g~~~~~~~~~i~~~~~~~~----------~~a 237 (281)
T PF13416_consen 168 DNGYFYGSGDDARQLFASGKVAMIIGGSWSISNLQKAGPDFGVAPPKDGTFVGGNGFAIPKNSKNPE----------AEA 237 (281)
T ss_dssp HTTSEETSHHHHHHHHHTTSESEEEEEGHHHHHHHHTTTTEEEEECTTTEEEEEEEEEEBTTSSTHH----------HHH
T ss_pred HhcccccchhHHHHHhcCCCeeeecccHhHHHHHHHhCCCeeEecCccccccCcceEEEeCCCChHH----------HHH
Confidence 77654443 4678899999999999999998888888999999999999999999999999999988 123
Q ss_pred HHHHHHHHhcHHHhchhhhhhcCCCCCChhhhhccCCChHHhcC
Q 024047 158 IHQWIEFCLQTARALPFKQEVIPGASPSALETTLVKLPEELLKG 201 (273)
Q Consensus 158 A~~FInfllspe~q~~~~~~~~~~~~p~~~~~a~~~l~~e~~~~ 201 (273)
|.+||+|+++|+.|..+.+ ..++.+++ ..+. .++++.++
T Consensus 238 A~~fl~~l~s~e~q~~~~~-~~g~~p~~--~~~~--~~~~~~~~ 276 (281)
T PF13416_consen 238 AWEFLKFLTSPEGQAEWAE-ATGYLPVN--KDVY--ESDEYKKD 276 (281)
T ss_dssp HHHHHHHHTSHHHHHHHHH-HHTSEESB--HHHH--HSHHHHTS
T ss_pred HHHHHHHHcCHHHHHHHHH-HhCCCCCC--hhhc--CCHHHhhC
Confidence 9999999999999999985 45665444 3333 26777664
No 13
>COG1840 AfuA ABC-type Fe3+ transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=99.75 E-value=1.4e-17 Score=152.63 Aligned_cols=153 Identities=18% Similarity=0.196 Sum_probs=117.7
Q ss_pred CEEEEeCccccccCCCCCCChHHhcCcccCCcEEeeCChHHHHH-HHHHHhCCCCCCCChhhhhhchHHHHHHHHHHHhc
Q 024047 1 MVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIG-SVLKYMGASYNSNNIDLQVAGGKISVQQNLALLAN 79 (273)
Q Consensus 1 ~gi~YN~~~v~~~g~~~p~SW~dL~dp~~kGki~~~d~~~~~~~-~al~~~G~~~~~~~~~~~~~~~~~~~~~~L~~l~~ 79 (273)
++++||++.+++...+.|+||+||.+|+|+|+|.+.++...... .++..+ .. .|.++++++|..++.
T Consensus 87 ~~~~~n~~~~~~~~~~~P~~w~DL~~p~~kg~i~~~~p~~s~~~~~~~~~~-~~-----------~G~~~~~~~l~~l~~ 154 (299)
T COG1840 87 LVFAVNTDYNKDLLKPVPKSWADLAKPEYKGKVQMADPTSSGTAYAALLAL-QA-----------YGEEKGWAYLKGLAA 154 (299)
T ss_pred EEEEEehhhccccCCCCCCCHHHhcCHhhcCCccccCCcccHHHHHHHHHH-Hh-----------cChHHHHHHHHHHHH
Confidence 47899999998754445999999999999999988775432211 122221 00 023578899999998
Q ss_pred ccccc--cc-hhHHHHhhcCcEEEEEecccc--HHHHHhcCCCcEEEecCCCceeeeeeEEEecCCCCcccccCCCCCCC
Q 024047 80 QARLF--DS-THYLKAFGIGDVWVAVGWSSD--VLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGP 154 (273)
Q Consensus 80 ~v~~~--~~-~~~~~~~~~Gev~va~~~s~~--~~~~~~~~~~v~~~~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~ 154 (273)
|...+ .+ ....+.+.+||+.+++++.+. ......++.++++++|++|+.+.+..++|.++++|++
T Consensus 155 n~~~~~~~~~~~~~~~va~Ge~~vg~~~~~~~~~~~~~~~~~~v~iv~P~~G~~v~~~~vaiik~a~~~e---------- 224 (299)
T COG1840 155 NLATYTGGSSSVVAKVVAGGEAAVGLGNLYYGAYAKDKAKGAPVEVVYPEEGTGVNPSGVALLKKAKNPE---------- 224 (299)
T ss_pred hcccccCCCcHHHHHHhhcCCceEEEEeeccHHHHHhhccCCceEEEecCCCceeeeeeeeeecCCCCHH----------
Confidence 86643 33 345678999999999999985 3444455778999999999999999999999999998
Q ss_pred hHHHHHHHHHHhcHHHhchhhhh
Q 024047 155 SPLIHQWIEFCLQTARALPFKQE 177 (273)
Q Consensus 155 ~~~A~~FInfllspe~q~~~~~~ 177 (273)
+|++||+|++|+|+|..+.+.
T Consensus 225 --~Ak~fid~llS~egQ~~~~~~ 245 (299)
T COG1840 225 --AAKLFIDFLLSKEGQEILAKK 245 (299)
T ss_pred --HHHHHHHHHcCHHHHHHHHhc
Confidence 899999999999999866543
No 14
>COG4143 TbpA ABC-type thiamine transport system, periplasmic component [Coenzyme metabolism]
Probab=99.70 E-value=5.9e-17 Score=147.27 Aligned_cols=197 Identities=18% Similarity=0.167 Sum_probs=137.5
Q ss_pred CEEEEeCccccccCCCCCCChHHhcCcccCCcEEeeCChHHHHHHHHHHhCCCCCCCChhhhhhchHHHHHHHHHHHhcc
Q 024047 1 MVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNIDLQVAGGKISVQQNLALLANQ 80 (273)
Q Consensus 1 ~gi~YN~~~v~~~g~~~p~SW~dL~dp~~kGki~~~d~~~~~~~~al~~~G~~~~~~~~~~~~~~~~~~~~~~L~~l~~~ 80 (273)
++|+||++++++ ||+|.+||..|+|+|+|.+.|+..+.-|.+++..-.+.... +.+.+++++|+++
T Consensus 132 ~a~vYd~~~~~~----ppksL~dL~~~~y~~~ii~qdPrtSspGl~fLlW~~svyg~----------d~~~~~W~kL~~~ 197 (336)
T COG4143 132 FAFVYDKTKLKN----PPKSLKDLVEPEYAGKIIYQDPRTSSPGLGFLLWTISVYGE----------DGAPEAWAKLADN 197 (336)
T ss_pred EEEEEchHHhcC----CcccHHHhcCccccCcEEecCCCCCCccHHHHHHHHHHhcc----------ccHHHHHHHHHhC
Confidence 369999999996 89999999999999999999976665565543332222211 2466777888877
Q ss_pred c-ccc--cchhHHHHhhcCcEEEEEeccccHHHHH-hcC-CCcEEEecCCCceeeeeeEEEecCCCCcccccCCCCCCCh
Q 024047 81 A-RLF--DSTHYLKAFGIGDVWVAVGWSSDVLPAV-KRM-SNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPS 155 (273)
Q Consensus 81 v-~~~--~~~~~~~~~~~Gev~va~~~s~~~~~~~-~~~-~~v~~~~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~ 155 (273)
. ... |++.|. +|..||+.|.++|+.+....+ .++ .+..-..-.||..+.+++.++.|+++|++
T Consensus 198 ~v~v~~gWSeaY~-aFt~GEap~VLSYtTspay~~~~~~~~~~~a~~f~eG~ylqiEgaa~~k~~knpe----------- 265 (336)
T COG4143 198 GVTVTKGWSEAYG-AFTKGEAPLVLSYTTSPAYHVYPEKKDRYAAALFPEGHYLQVEGAAVLKGAKNPE----------- 265 (336)
T ss_pred CeEecCcHHHHHH-HHhCCccceEEEeccCcchhcccccccccchhcCCCCceeEEEeeeeecCCCCHH-----------
Confidence 4 333 344455 999999999999988865443 222 23322233478999999999999999998
Q ss_pred HHHHHHHHHHhcHHHhchhhhhhcCCCCCChhhhhccCCChHHhcCCCCCCCCcccCCCCHHHHhhceeccCCCHHHHHH
Q 024047 156 PLIHQWIEFCLQTARALPFKQEVIPGASPSALETTLVKLPEELLKGKPSQDTNLIVGVPPAEILARCEFLEPLSEATLSD 235 (273)
Q Consensus 156 ~~A~~FInfllspe~q~~~~~~~~~~~~p~~~~~a~~~l~~e~~~~~~~~~~~l~~~~p~~~~l~~~~~~~~~~~~~~~~ 235 (273)
+|.+|++||+|||.|..+....+.| |.. . ...||+.+.... .|+. .+.+-...-.++++.
T Consensus 266 -LA~~F~~FmlS~e~Q~~ip~~nwm~--Pa~-~--~~~Lp~~f~~~~----------~p~~----~~~~~~~~v~~~~~~ 325 (336)
T COG4143 266 -LADKFLQFMLSPEFQDAIPTTNWMY--PAV-K--NVPLPAVFDALV----------KPAK----TVSLSPKEVAANRKA 325 (336)
T ss_pred -HHHHHHHHHhCHHHHhhCCccceee--ecC-C--CCcCCHHHHhhC----------CCCC----cccCCHHHHHHHHHH
Confidence 9999999999999999997665543 542 1 256899887632 3322 111111112456788
Q ss_pred HHHHHHHh
Q 024047 236 YEWLVADL 243 (273)
Q Consensus 236 ~~~~W~~i 243 (273)
|.+.|.+.
T Consensus 326 Wi~~W~~~ 333 (336)
T COG4143 326 WISEWQRA 333 (336)
T ss_pred HHHHHHHH
Confidence 88888764
No 15
>TIGR01256 modA molybdenum ABC transporter, periplasmic molybdate-binding protein. The model describes the molybdate ABC transporter periplasmic binding protein in bacteria and archae. Several of the periplasmic receptors constitute a diverse class of binding proteins that differ widely in size, sequence and ligand specificity. It has been shown experimentally by radioactive labeling that ModA represent hydrophylioc periplasmic-binding protein in gram-negative organisms and its counterpart in gram-positive organisms is a lipoprotein. The other components of the system include the ModB, an integral membrane protein and ModC the ATP-binding subunit. Invariably almost all of them display a common beta/alpha folding motif and have similar tertiary structures consisting of two globular domains.
Probab=99.52 E-value=2.5e-14 Score=124.24 Aligned_cols=135 Identities=13% Similarity=0.093 Sum_probs=97.1
Q ss_pred EEEEeCccccccCCCCCCChHHhcCccc-CCcEEeeCChHHHHHHHHHHhCCCCCCCChhhhhhchHHHHHHHHHHHhcc
Q 024047 2 VIAYKKSKFRKHNLAPIEDWKDLWRPEL-AGRISMVNSPREVIGSVLKYMGASYNSNNIDLQVAGGKISVQQNLALLANQ 80 (273)
Q Consensus 2 gi~YN~~~v~~~g~~~p~SW~dL~dp~~-kGki~~~d~~~~~~~~al~~~G~~~~~~~~~~~~~~~~~~~~~~L~~l~~~ 80 (273)
+|+||++ . .|+||+||. +.+ +++|.+.|+.....+...... . +....+.+++++
T Consensus 77 ~l~~~~~---~----~~~s~~dL~-~~~~~~~i~~~~P~~~~~g~~~~~~-~----------------~~~g~~~~l~~n 131 (216)
T TIGR01256 77 VLISPKN---R----VVDDLDILK-KWVADKRVAIGDPKHAPYGAAAKEV-L----------------QKLGLWETLKKK 131 (216)
T ss_pred EEEEECC---C----CcCcHHHHh-hcccCCeEEecCCCcCcChHHHHHH-H----------------HHCCChhhhhhh
Confidence 6778876 1 579999997 766 799999885433333221110 0 001123345555
Q ss_pred cccccc-hhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEEecCCCceeeeeeEEEecCCCCcccccCCCCCCChHHHH
Q 024047 81 ARLFDS-THYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPSPLIH 159 (273)
Q Consensus 81 v~~~~~-~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~ 159 (273)
+....+ .+..+.+.+||+++++.|.+++.... +....+++|++|...+.++++|+++++|++ +|+
T Consensus 132 ~~~~~~~~~~~~~~~~Ge~~~~~~~~~~~~~~~--~~~~~~~~P~~~~~~~~~~~ai~k~a~~~~------------~A~ 197 (216)
T TIGR01256 132 LVYGEDVRQALQFVETGNAPAGIVALSDVIPSK--KVGSVATFPEDLYKPIRYPAVIVKGGKNNA------------AAK 197 (216)
T ss_pred eeecCcHHHHHHHHHcCCCCEEeeehhhhcccC--CccEEEEeCccccCCccccEEEEECCCChH------------HHH
Confidence 532223 46788899999999999998876543 334557899999888888999999999998 899
Q ss_pred HHHHHHhcHHHhchhh
Q 024047 160 QWIEFCLQTARALPFK 175 (273)
Q Consensus 160 ~FInfllspe~q~~~~ 175 (273)
+|||||+|||.|..+.
T Consensus 198 ~fi~fl~s~e~q~~~~ 213 (216)
T TIGR01256 198 AFIDYLKSPEAKEILR 213 (216)
T ss_pred HHHHHHcCHHHHHHHH
Confidence 9999999999998875
No 16
>TIGR00971 3a0106s03 sulfate/thiosulfate-binding protein. This model describes binding proteins functionally associated with the sulfate ABC transporter. In the model bacterium E. coli, two different members work with the same transporter; mutation analysis says each enables the uptake of both sulfate and thiosulfate. In many species, a single binding protein is found, and may be referred to in general terms as a sulfate ABC transporter sulfate-binding protein.
Probab=99.52 E-value=2.2e-13 Score=125.96 Aligned_cols=149 Identities=18% Similarity=0.255 Sum_probs=104.0
Q ss_pred CEEEEeCccccccCCCCCCChHHhcCcccCCcEEeeCChHHHHHHHH---HHhCCCCCCCChhhhhhchHHHHHHHHHHH
Q 024047 1 MVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSVL---KYMGASYNSNNIDLQVAGGKISVQQNLALL 77 (273)
Q Consensus 1 ~gi~YN~~~v~~~g~~~p~SW~dL~dp~~kGki~~~d~~~~~~~~al---~~~G~~~~~~~~~~~~~~~~~~~~~~L~~l 77 (273)
+||+|+++... .|+||+||+++++ +|++.| |..+...++ ...|........ +.++++++|.++
T Consensus 105 lvl~v~k~~~~-----~i~sw~dL~~~~~--kiai~d-p~~sg~~~~~~L~~~g~~~~~~~g------~~~~a~~~l~~l 170 (315)
T TIGR00971 105 IVFLVRKGNPK-----QIHDWNDLIKPGV--SVITPN-PKSSGGARWNYLAAWGYALHHNNG------DQAKAQQFVTAL 170 (315)
T ss_pred EEEEEeCCCCC-----CCCCHHHHhCCCc--EEEeCC-hhhHHHHHHHHHHHHHHHhhhcCC------CHHHHHHHHHHH
Confidence 36788877653 4789999999876 588776 443322212 222432211111 134678999999
Q ss_pred hcccccccch---hHHHHhhcCcEEEEEeccccHHHHHhc--CCCcEEEecCCCceeeeeeEEEec----CCCCcccccC
Q 024047 78 ANQARLFDST---HYLKAFGIGDVWVAVGWSSDVLPAVKR--MSNVAVVVPKSGASLWADLWAIPA----ASRLETKQIG 148 (273)
Q Consensus 78 ~~~v~~~~~~---~~~~~~~~Gev~va~~~s~~~~~~~~~--~~~v~~~~P~eG~~~~~d~~~I~k----~a~~~~~~~~ 148 (273)
.+++..|..+ +....+.+|++++++.|.+++...... +.++.+++|++|.+.... +++.+ .+++++
T Consensus 171 ~~nv~~~~~~~~~~~~~~v~~Ge~dagivy~sda~~~~~~~~~~~i~iviP~e~~~i~~~-iavv~~~~~~~~~~e---- 245 (315)
T TIGR00971 171 LKNVEVLDSGARGATNTFVERGIGDVLIAWENEALLARKELGKDKFEIVTPSESILAEPT-VSVVDKVVEKKGTKK---- 245 (315)
T ss_pred HhhccccCCCchHHHHHHHHcCceeEEEEEcHHHHHHHHhcCCCCeEEEECCCCcccccc-EEEEEcccCCCCCHH----
Confidence 9998877543 355667799999999999998765543 468999999998766554 55554 345555
Q ss_pred CCCCCChHHHHHHHHHHhcHHHhchhhh
Q 024047 149 GRVRGPSPLIHQWIEFCLQTARALPFKQ 176 (273)
Q Consensus 149 ~~~~~~~~~A~~FInfllspe~q~~~~~ 176 (273)
+|++|||||+|||+|+.+.+
T Consensus 246 --------~A~~FidfLlS~eaq~i~ak 265 (315)
T TIGR00971 246 --------VAEAYLKYLYSPEGQEIAAK 265 (315)
T ss_pred --------HHHHHHHHhcCHHHHHHHHH
Confidence 89999999999999999974
No 17
>PRK10852 thiosulfate transporter subunit; Provisional
Probab=99.46 E-value=1.1e-12 Score=122.48 Aligned_cols=148 Identities=18% Similarity=0.204 Sum_probs=102.9
Q ss_pred CEEEEeCccccccCCCCCCChHHhcCcccCCcEEeeCChHHHHHH--HHHHhCC--CCCCCChhhhhhchHHHHHHHHHH
Q 024047 1 MVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGS--VLKYMGA--SYNSNNIDLQVAGGKISVQQNLAL 76 (273)
Q Consensus 1 ~gi~YN~~~v~~~g~~~p~SW~dL~dp~~kGki~~~d~~~~~~~~--al~~~G~--~~~~~~~~~~~~~~~~~~~~~L~~ 76 (273)
++|+||++..+ .|+||+||++|.+ +|.|.|+.....+. .|...+. .....++ .++++++.+
T Consensus 122 lV~vv~kgnpk-----~i~sw~DL~~~~~--kI~i~nP~tSg~g~~~~La~~~~~~~~~G~d~--------~~a~~~l~~ 186 (338)
T PRK10852 122 MAFLVRKGNPK-----NIHDWNDLVRSDV--KLIFPNPKTSGNARYTYLAAWGAADKADGGDK--------AKTEQFMTQ 186 (338)
T ss_pred EEEEEECCCCC-----CCCCHHHhcCCCc--EEEECCCCcchHHHHHHHHHHHHHHHHcCCCh--------HHHHHHHHH
Confidence 36888887653 5899999999875 69998843222221 0111111 0001122 247888999
Q ss_pred Hhcccccccch---hHHHHhhcCcEEEEEeccccHHHHHhc--CCCcEEEecCCCceeeeeeEEEe-cC---CCCccccc
Q 024047 77 LANQARLFDST---HYLKAFGIGDVWVAVGWSSDVLPAVKR--MSNVAVVVPKSGASLWADLWAIP-AA---SRLETKQI 147 (273)
Q Consensus 77 l~~~v~~~~~~---~~~~~~~~Gev~va~~~s~~~~~~~~~--~~~v~~~~P~eG~~~~~d~~~I~-k~---a~~~~~~~ 147 (273)
+..|+..+..+ .....+.+|++++++.|..++.....+ ..++.+++|++|.+... .++|. ++ ++|++
T Consensus 187 l~~Nv~v~~~~~~~a~~~~v~~Ge~Dvgi~yesda~~~~~~~~~~~~~iV~P~~~~~~~~-pvAvv~k~~~~~~~~e--- 262 (338)
T PRK10852 187 FLKNVEVFDTGGRGATTTFAERGLGDVLISFESEVNNIRKQYEAQGYEVVVPKTNILAEF-PVAWVDKNVQANGTEK--- 262 (338)
T ss_pred HHhcCCEecCCCcHHHHHHHHcCCccEEEEechHHHHHHHhcCCCCeEEEeCCCCceeee-eEEEEEeccccCCCHH---
Confidence 99998877532 456667899999999999887655443 35789999998887655 66666 55 34555
Q ss_pred CCCCCCChHHHHHHHHHHhcHHHhchhhh
Q 024047 148 GGRVRGPSPLIHQWIEFCLQTARALPFKQ 176 (273)
Q Consensus 148 ~~~~~~~~~~A~~FInfllspe~q~~~~~ 176 (273)
+|++|||||+|+|+|..+.+
T Consensus 263 ---------~AkaFidfL~S~eaQ~i~ak 282 (338)
T PRK10852 263 ---------AAKAYLNYLYSPQAQTIITD 282 (338)
T ss_pred ---------HHHHHHHHhcCHHHHHHHHH
Confidence 99999999999999999974
No 18
>PRK10752 sulfate transporter subunit; Provisional
Probab=99.45 E-value=1.1e-12 Score=122.05 Aligned_cols=148 Identities=16% Similarity=0.223 Sum_probs=99.4
Q ss_pred EEEEeCccccccCCCCCCChHHhcCcccCCcEEeeCChHHHHHH--HHHHhCCCC--CCCChhhhhhchHHHHHHHHHHH
Q 024047 2 VIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGS--VLKYMGASY--NSNNIDLQVAGGKISVQQNLALL 77 (273)
Q Consensus 2 gi~YN~~~v~~~g~~~p~SW~dL~dp~~kGki~~~d~~~~~~~~--al~~~G~~~--~~~~~~~~~~~~~~~~~~~L~~l 77 (273)
+|++++..-+ .|++|+||++|.+ +|+|.|+.....+. .|..++... ...+ .+++++++.++
T Consensus 117 viiv~~gnp~-----~i~~w~DL~~~~~--~I~i~dP~tSGta~~~~laa~~~~l~~~~g~--------~~~a~~~l~kL 181 (329)
T PRK10752 117 VFLVRKGNPK-----QIHDWNDLIKPGV--SVITPNPKSSGGARWNYLAAWGYALHHNNND--------QAKAQDFVKAL 181 (329)
T ss_pred EEEEECCCCC-----CCCCHHHhcCCCc--EEEECCCCcchHHHHHHHHHHHHHHhccCCC--------HHHHHHHHHHH
Confidence 4666665432 4789999999976 79998853322111 111111100 0011 23678999999
Q ss_pred hcccccccch---hHHHHhhcCcEEEEEeccccHHHHHhc--CCCcEEEecCCCceeeeeeEEE---ecCCCCcccccCC
Q 024047 78 ANQARLFDST---HYLKAFGIGDVWVAVGWSSDVLPAVKR--MSNVAVVVPKSGASLWADLWAI---PAASRLETKQIGG 149 (273)
Q Consensus 78 ~~~v~~~~~~---~~~~~~~~Gev~va~~~s~~~~~~~~~--~~~v~~~~P~eG~~~~~d~~~I---~k~a~~~~~~~~~ 149 (273)
++|+..+.++ .....+.+|+.+++++|..++.....+ +.++++++|++|.........| .++++|++
T Consensus 182 ~~Nv~~~~~~~~~a~~~~v~~g~gdv~I~~e~~a~~~~~~~~g~~veiV~P~~g~~~~~~va~v~~~~k~~~~~e----- 256 (329)
T PRK10752 182 YKNVEVLDSGARGSTNTFVERGIGDVLIAWENEALLAANELGKDKFEIVTPSESILAEPTVSVVDKVVDKKGTRE----- 256 (329)
T ss_pred HhcCCcccCCCcchhhHHHHcCeeeEEEEechHHHHHHHHhCCCCEEEEECCCCccccceeEEEEeccccCCCHH-----
Confidence 9998766432 234456679999999999887765443 7899999999986444433223 46678877
Q ss_pred CCCCChHHHHHHHHHHhcHHHhchhhh
Q 024047 150 RVRGPSPLIHQWIEFCLQTARALPFKQ 176 (273)
Q Consensus 150 ~~~~~~~~A~~FInfllspe~q~~~~~ 176 (273)
+|++||||++|||+|..+++
T Consensus 257 -------~Ak~FidfllS~eaQ~i~a~ 276 (329)
T PRK10752 257 -------VAEAYLKYLYSPEGQEIAAK 276 (329)
T ss_pred -------HHHHHHHHhcCHHHHHHHHH
Confidence 89999999999999999864
No 19
>COG4134 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=99.40 E-value=1.7e-12 Score=118.59 Aligned_cols=180 Identities=15% Similarity=0.176 Sum_probs=133.6
Q ss_pred CEEEEeCccccccCCCCCCChHHhcC--cccCCcEEeeCChH-----HHHHHHHHHh-CCCC---CCCChhhhhhchHHH
Q 024047 1 MVIAYKKSKFRKHNLAPIEDWKDLWR--PELAGRISMVNSPR-----EVIGSVLKYM-GASY---NSNNIDLQVAGGKIS 69 (273)
Q Consensus 1 ~gi~YN~~~v~~~g~~~p~SW~dL~d--p~~kGki~~~d~~~-----~~~~~al~~~-G~~~---~~~~~~~~~~~~~~~ 69 (273)
++|+|+.+++++ +|+|.++|+. .+..+|++...++. ..+-.++..+ |... ...|+. .+.+++..
T Consensus 152 ~~f~yd~~k~~~----~P~s~eeLL~wA~aNP~rf~Y~~P~~gg~G~~Fl~~~~i~Lt~d~~~l~~avDpa-t~~k~~~p 226 (384)
T COG4134 152 LVFIYDRDKVPQ----VPQSFEELLVWAKANPKRFGYPRPPNGGTGTAFLKQLLIMLTGDAAALQQAVDPA-TFAKVWAP 226 (384)
T ss_pred ceEEEccccCCC----CCcCHHHHHHHHHhCcCccccCCCCCCCccHhHHHHHHHHhcCchHhhcCCCChH-HHHhhccH
Confidence 579999998886 8999999975 68899999987553 2333333344 4321 123443 34567889
Q ss_pred HHHHHHHHhccccccc-c-hhHHHHhhcCcEEEEEeccccHHHHHhcCC---CcEEEecCCCceeeeeeEEEecCCCCcc
Q 024047 70 VQQNLALLANQARLFD-S-THYLKAFGIGDVWVAVGWSSDVLPAVKRMS---NVAVVVPKSGASLWADLWAIPAASRLET 144 (273)
Q Consensus 70 ~~~~L~~l~~~v~~~~-~-~~~~~~~~~Gev~va~~~s~~~~~~~~~~~---~v~~~~P~eG~~~~~d~~~I~k~a~~~~ 144 (273)
.+++|.++.+++-... + .++.+.+.+|+..|++.|.+.+...+..|. ...+..++.|.+...+.++||++++++.
T Consensus 227 ~WqYl~~L~~~i~r~~kg~Adml~lL~dG~l~l~~t~~~~~~s~~~tG~lp~s~~~~~~~~G~vgn~~f~aIPaNa~~~A 306 (384)
T COG4134 227 LWQYLDELHPYIWRTGKGPADMLQLLNDGTLYLTLTFPDHASSAIATGDLPASARSFALEKGMVGNGHFMAIPANANAKA 306 (384)
T ss_pred HHHHHHHhhhhhhhcCCCHHHHHHHhcCCcEEEeecchhhhhcchhccCCchHhhhhhhccccccCcceEEecCCCCCch
Confidence 9999999999875444 3 478999999999999999766666666663 4677889999999999999999999998
Q ss_pred cccCCCCCCChHHHHHHHHHHhcHHHhchhhhhhcCCCCCChhhhhccCCChHHhc
Q 024047 145 KQIGGRVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALETTLVKLPEELLK 200 (273)
Q Consensus 145 ~~~~~~~~~~~~~A~~FInfllspe~q~~~~~~~~~~~~p~~~~~a~~~l~~e~~~ 200 (273)
.|..||||+||||.|..-.++.+. +.|++ -.-..+|+..+.
T Consensus 307 ------------~alvl~n~lls~EaQlrk~d~~v~-~~P~~--l~pq~lpda~qe 347 (384)
T COG4134 307 ------------AALVLANFLLSPEAQLRKLDPAVW-GDPSV--LDPQLLPDAQQE 347 (384)
T ss_pred ------------HHHHHHHHhcCHHHHHhhhccccc-CCccc--cCcccChhhHhh
Confidence 999999999999999766555544 56654 223445555443
No 20
>PF13531 SBP_bac_11: Bacterial extracellular solute-binding protein; PDB: 2HXW_B 3FJG_C 3FJM_B 3FJ7_B 3FIR_B 3AXF_C 1WOD_A 1AMF_A 3R26_A 1SBP_A ....
Probab=99.10 E-value=9.7e-10 Score=96.13 Aligned_cols=138 Identities=22% Similarity=0.275 Sum_probs=98.6
Q ss_pred CEEEEeCccccccCCCCCCChHHhcCcccCCcEEeeCChHHHHHHHH----HHhCCCCCCCChhhhhhchHHHHHHHHHH
Q 024047 1 MVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSVL----KYMGASYNSNNIDLQVAGGKISVQQNLAL 76 (273)
Q Consensus 1 ~gi~YN~~~v~~~g~~~p~SW~dL~dp~~kGki~~~d~~~~~~~~al----~~~G~~~~~~~~~~~~~~~~~~~~~~L~~ 76 (273)
++|+|+++.- ..+.+|+||.++++ ||++.|+.....+... ...|. .+++.+
T Consensus 81 ~vl~~~~~~~-----~~~~~~~dL~~~~~--~i~~~dP~~s~~g~~~~~~l~~~g~------------------~~~~~~ 135 (230)
T PF13531_consen 81 LVLAVPKGNP-----KGIRSWADLAQPGL--RIAIPDPSTSPSGLAALQVLAAAGG------------------QELLDA 135 (230)
T ss_dssp EEEEEETTST-----TSTTCHHHHCSTT----EEEE-TTTTHHHHHHHHHHHHHTH------------------CHHHHH
T ss_pred eEEEeccCcc-----cccCCHHHHhhccC--EEEecCcccChhhHHHHHHHHHccc------------------HHHHHH
Confidence 4688888872 26889999999988 7999986444443322 11111 234566
Q ss_pred Hhccccccc-c-hhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEEecCCCcee-ee-eeEEEecCCCCcccccCCCCC
Q 024047 77 LANQARLFD-S-THYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASL-WA-DLWAIPAASRLETKQIGGRVR 152 (273)
Q Consensus 77 l~~~v~~~~-~-~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~~P~eG~~~-~~-d~~~I~k~a~~~~~~~~~~~~ 152 (273)
+..++..+. + .+....+.+|++++++.|...+... ..+.++.++.|.++... .+ ..++|.++++|++
T Consensus 136 l~~~~~~~~~~~~~~~~~v~~g~~d~~~~~~s~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-------- 206 (230)
T PF13531_consen 136 LQKNIVQYVPSTSQVLSAVASGEADAGIVYESQAIFA-RQGDPLSYVYPPDGVNSPPIDYPIAILKNAPHPE-------- 206 (230)
T ss_dssp HHHTEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHC-TSHTTEEEEE-STTTSSSEEEEEEEEBTTCTTHH--------
T ss_pred HHHhCcccccchHHHHHHHHcCCCcceeeHHHHHHHh-hcCCCeEEEECCchhcCCCEEEEEEEecCCCCHH--------
Confidence 666665443 2 4678889999999999997776433 45678999988887774 44 4699999999988
Q ss_pred CChHHHHHHHHHHhcHHHhchhhh
Q 024047 153 GPSPLIHQWIEFCLQTARALPFKQ 176 (273)
Q Consensus 153 ~~~~~A~~FInfllspe~q~~~~~ 176 (273)
+|.+|++||+|+++|..+.+
T Consensus 207 ----~a~~f~~~L~s~~~q~~l~~ 226 (230)
T PF13531_consen 207 ----AARAFIDFLLSPEGQQILAK 226 (230)
T ss_dssp ----HHHHHHHHHTSHHHHHHHHH
T ss_pred ----HHHHHHHHHCCHHHHHHHHH
Confidence 99999999999999998864
No 21
>TIGR03850 bind_CPR_0540 carbohydrate ABC transporter substrate-binding protein, CPR_0540 family. Members of this protein are the substrate-binding protein of a predicted carbohydrate transporter operon, together with permease subunits of ABC transporter homology families. This substrate-binding protein frequently co-occurs in genomes with a family of disaccharide phosphorylases, TIGR02336, suggesting that the molecule transported will include beta-D-galactopyranosyl-(1-3)-N-acetyl-D-glucosamine and related carbohydrates. Members of this family are sporadically strain by strain, often in species with a human host association, including Propionibacterium acnes and Clostridium perfringens, and Bacillus cereus.
Probab=99.03 E-value=4.6e-09 Score=100.20 Aligned_cols=166 Identities=14% Similarity=0.144 Sum_probs=98.8
Q ss_pred CEEEEeCccccccCCCCCCChHHhcCc--ccC--Cc--EEeeCCh-HH-HHHHHHHHhCCCC----------CCCChhhh
Q 024047 1 MVIAYKKSKFRKHNLAPIEDWKDLWRP--ELA--GR--ISMVNSP-RE-VIGSVLKYMGASY----------NSNNIDLQ 62 (273)
Q Consensus 1 ~gi~YN~~~v~~~g~~~p~SW~dL~dp--~~k--Gk--i~~~d~~-~~-~~~~al~~~G~~~----------~~~~~~~~ 62 (273)
.++.||+++++++|+++|+||++|.+. +++ |. +.+.... .+ .+...+...|+.. ...+..
T Consensus 161 ~~l~yNkdl~~~aG~~~P~Twde~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~-- 238 (437)
T TIGR03850 161 TGLFYNKTLFEEKGWEVPTTWDEMFALGDKAKAEGISLFTYPTTGYFDAFFYALLAEAGGDDFFNKAMNYEEGIWDTE-- 238 (437)
T ss_pred EEEEEcHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCceeecCCcchHHHHHHHHHHHhcCHHHHHHHhcCCCCccCCH--
Confidence 378999999999999999999999973 332 32 1221111 11 1112222333221 111111
Q ss_pred hhchHHHHHHHHHHHhcccc-c---c----cchhHHHHhhcCcEEEEEeccccHHHHHhc----CCCcEEE-ecC--CC-
Q 024047 63 VAGGKISVQQNLALLANQAR-L---F----DSTHYLKAFGIGDVWVAVGWSSDVLPAVKR----MSNVAVV-VPK--SG- 126 (273)
Q Consensus 63 ~~~~~~~~~~~L~~l~~~v~-~---~----~~~~~~~~~~~Gev~va~~~s~~~~~~~~~----~~~v~~~-~P~--eG- 126 (273)
...++.+++.++.+.+. . . ..++..+.|.+|++.+.+.++......... +.+++++ +|. +|
T Consensus 239 ---~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~G~~a~~~~g~w~~~~~~~~~~~~~~~~~~~~~P~~~~~~ 315 (437)
T TIGR03850 239 ---EAKKAFDTVGKLATYTEPTTVANANNQDFTKNQQLVLDNKALFMPNGTWVVGEMKDAPRADGFEWGMTALPAVKEGG 315 (437)
T ss_pred ---HHHHHHHHHHHHHHhcCCCcccccccccccHHHHHHHcCCeEEEeCCcchHHHhhcCCCCCCCceeeeeCCccCCCC
Confidence 24466677777765321 1 1 112356789999998766544333333322 2356553 564 22
Q ss_pred ---ceeeeeeEEEecCCCCcccccCCCCCCChHHHHHHHHHHhcHHHhchhhhhhcCCCCCC
Q 024047 127 ---ASLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPS 185 (273)
Q Consensus 127 ---~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~~~~~~~~p~ 185 (273)
...+..+++|+++++|++ +|.+||+|+.++|.|..+. + .++.+|.
T Consensus 316 ~~~~~~~~~~~~v~~~s~~~~------------aA~~Fi~~l~s~e~~~~~~-~-~g~~~p~ 363 (437)
T TIGR03850 316 DRYSYTFFEQMWIPAAAKNKD------------LAKEFIAFLYSDEAAKIFA-K-SGAVQPV 363 (437)
T ss_pred CcccccCcceeEEECCCCCHH------------HHHHHHHHHhCHHHHHHHH-h-cCCcCCc
Confidence 245667899999999998 9999999999999987754 3 3555554
No 22
>PF01547 SBP_bac_1: Bacterial extracellular solute-binding protein; InterPro: IPR006059 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane. The protein components of these traffic systems include one or two transmembrane protein components, one or two membrane-associated ATP-binding proteins and a high affinity periplasmic solute-binding protein. In Gram-positive bacteria, which are surrounded by a single membrane and therefore have no periplasmic region, the equivalent proteins are bound to the membrane via an N-terminal lipid anchor. These homologue proteins do not play an integral role in the transport process per se, but probably serve as receptors to trigger or initiate translocation of the solute through the membrane by binding to external sites of the integral membrane proteins of the efflux system. In addition at least some solute-binding proteins function in the initiation of sensory transduction pathways. On the basis of sequence similarities, the vast majority of these solute-binding proteins can be grouped into eight family clusters [], which generally correlate with the nature of the solute bound. Family 1 includes the maltose/maltodextrin-binding proteins of Enterobacteriaceae (gene malE) [] and Streptococcus pneumoniae malX; multiple oligosaccharide binding protein of Streptococcus mutans (gene msmE); Escherichia coli glycerol-3-phosphate-binding protein; Serratia marcescens iron-binding protein (gene sfuA) and the homologous proteins (gene fbp) from Haemophilus influenzae and Neisseria; and the E. coli thiamine-binding protein (gene tbpA).; GO: 0005215 transporter activity, 0006810 transport; PDB: 3CFZ_A 2THI_A 3THI_A 4THI_A 1O7T_C 1D9Y_A 1URG_A 1URS_A 1URD_B 3OMB_A ....
Probab=98.96 E-value=7.2e-09 Score=92.76 Aligned_cols=153 Identities=16% Similarity=0.183 Sum_probs=90.3
Q ss_pred EEEEeCccccccCCCCCCChHHhcCc--ccC--C--cEEee---CChHH---HHHHHHHHhCCCC-----C-CCChhhhh
Q 024047 2 VIAYKKSKFRKHNLAPIEDWKDLWRP--ELA--G--RISMV---NSPRE---VIGSVLKYMGASY-----N-SNNIDLQV 63 (273)
Q Consensus 2 gi~YN~~~v~~~g~~~p~SW~dL~dp--~~k--G--ki~~~---d~~~~---~~~~al~~~G~~~-----~-~~~~~~~~ 63 (273)
+++||++.++++|+++|+||++|.+. +++ + ...+. ..... .+...+...|... . -.++.
T Consensus 116 ~~~ynkdl~~~~Gl~~p~Twde~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--- 192 (315)
T PF01547_consen 116 GLYYNKDLFEKAGLDPPWTWDEFLEAAKKIKEKGPDPYGIAFGGSDSWDAYWFFQAFAWSFGGYWFDEDGKGFDDPE--- 192 (315)
T ss_dssp EEEEETTTHHHTTSSSTSBHHHHHHHHHHHHHTTTCECEECCTEESHHHHHHHHHHHHHHTTHEEEEEETCESCSHH---
T ss_pred EEEEchhHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCceEEeccCccccchHHHHHHHHhcCceeecCCccccCCHH---
Confidence 78999999999999999999999873 222 1 21111 11111 1112233444211 0 02222
Q ss_pred hchHHHHHHHHHHHh-------cc----cccccchhHHHHhhcCcEEEEEeccccHHH---------H----HhcCCCcE
Q 024047 64 AGGKISVQQNLALLA-------NQ----ARLFDSTHYLKAFGIGDVWVAVGWSSDVLP---------A----VKRMSNVA 119 (273)
Q Consensus 64 ~~~~~~~~~~L~~l~-------~~----v~~~~~~~~~~~~~~Gev~va~~~s~~~~~---------~----~~~~~~v~ 119 (273)
...+...+..+. .. .......+..+.|.+|++.+.+.+++.+.. . .....++.
T Consensus 193 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (315)
T PF01547_consen 193 ---AVEALKYYKKLYYEKLWKKGYFPPDAVSSDWDQAQQAFASGKVAMIIDGSWYALNWMKVEPQSAFNQNSPPVKFDWG 269 (315)
T ss_dssp ---HHHHHHHHHHHHHHHHHHCHHTTTTETTSSHHHHHHHHHTTSEEEEEEEHHHHHHHHHHHHHHHHHHHHHTTTTTEE
T ss_pred ---HHHHHHHHHHHHHhhhhhhcccCCCccccCHHHHHHHHhCCCceEEEeccccccccccccccccccccccccccccc
Confidence 112223333222 11 112223456789999999999888766211 1 12234566
Q ss_pred EE-ecC--CCc--eeeeeeEEEecCCCCcccccCCCCCCChHHHHHHHHHHhcHHHhc
Q 024047 120 VV-VPK--SGA--SLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARAL 172 (273)
Q Consensus 120 ~~-~P~--eG~--~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInfllspe~q~ 172 (273)
+. +|. .|. ....++++|+++|+|++ +|.+||+||+++|+|.
T Consensus 270 ~~~~P~~~~~~~~~~~~~~~~I~~~sk~~e------------~A~~fl~~l~s~e~Q~ 315 (315)
T PF01547_consen 270 FAPFPAGPGGGPPIGGGDGIAISKNSKNPE------------AAWKFLDFLTSPEGQK 315 (315)
T ss_dssp EECEEBETTEETCSEEEEEEEEBTTSSTHH------------HHHHHHHHHTSHHHHH
T ss_pred eeccCccCCCCCccccceEEEEECCCCCHH------------HHHHHHHHhCChhhCC
Confidence 64 453 111 15778899999999998 9999999999999984
No 23
>PRK03537 molybdate ABC transporter periplasmic molybdate-binding protein; Provisional
Probab=98.96 E-value=1.4e-08 Score=87.08 Aligned_cols=151 Identities=13% Similarity=0.132 Sum_probs=93.5
Q ss_pred EEEEeCccccccCCCCCCChHH-hcCcccCCcEEeeCChHHHHH----HHHHHhCCCCCCCChhhhhhchHHHHHHHHHH
Q 024047 2 VIAYKKSKFRKHNLAPIEDWKD-LWRPELAGRISMVNSPREVIG----SVLKYMGASYNSNNIDLQVAGGKISVQQNLAL 76 (273)
Q Consensus 2 gi~YN~~~v~~~g~~~p~SW~d-L~dp~~kGki~~~d~~~~~~~----~al~~~G~~~~~~~~~~~~~~~~~~~~~~L~~ 76 (273)
+|+|+++.- ..+++|.+ |.++.+ ||++.|+...-.| .+|...|..... .++.+.+.+..
T Consensus 25 vl~~~~~~~-----~~~~~~~d~L~~~~~--~iai~~P~~~P~G~~a~~~l~~~~~~~~~---------~~~~l~~~~~~ 88 (188)
T PRK03537 25 CAIARADVM-----LTSDNLLDLLLDPDI--RLGTSTPGADPSGDYAWQLFDRAEALHAG---------AGEALRTKALQ 88 (188)
T ss_pred EEEEcCCCC-----CCccCHHHHhcCCCc--EEEcCCCCCCcchHHHHHHHHHHHhhccC---------cchHHHHHHHH
Confidence 577777542 14678977 668875 6988874322222 233333321100 12223332222
Q ss_pred Hh--cccccccc-hhHHH-HhhcCcEEEEEeccccHHHHHhcCCCcEEE-ecCCCceeeeeeEEEecCCCCcccccCCCC
Q 024047 77 LA--NQARLFDS-THYLK-AFGIGDVWVAVGWSSDVLPAVKRMSNVAVV-VPKSGASLWADLWAIPAASRLETKQIGGRV 151 (273)
Q Consensus 77 l~--~~v~~~~~-~~~~~-~~~~Gev~va~~~s~~~~~~~~~~~~v~~~-~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~ 151 (273)
+. .++..+.. .+... .+.+|++++|+.|..++.....++.++.++ +|.++...-...++|+++++ +
T Consensus 89 ~v~~~~~~~~~~~~~~~~~~v~~G~adag~vy~s~~~~~~~~~~~~~~i~iP~~~~~~i~y~iav~k~~~--~------- 159 (188)
T PRK03537 89 LVGGPNSAPIPAGRNAAEWLIENKQADIFIGYASNAPLAQREVPSLQVVDLPEPLAVGAEYGLAILKDAS--P------- 159 (188)
T ss_pred HhCCCCCCcCCCcchHHHHHHHCCCCCEEEEEecHHHHHhccCCCCeEEeCCCCcceeeeeeEEEecCCh--H-------
Confidence 21 33322222 23344 788999999999988876554334467754 89888777677899998764 5
Q ss_pred CCChHHHHHHHHHHhcHHHhchhhhhhcCCCCC
Q 024047 152 RGPSPLIHQWIEFCLQTARALPFKQEVIPGASP 184 (273)
Q Consensus 152 ~~~~~~A~~FInfllspe~q~~~~~~~~~~~~p 184 (273)
+|++|+|||+|+|+|..+.+ .||..|
T Consensus 160 -----~A~~F~~fl~s~eaq~i~~~--~Gf~~~ 185 (188)
T PRK03537 160 -----QAKRLADFLLSPKGQAILAQ--YGFSPP 185 (188)
T ss_pred -----HHHHHHHHHhCHHHHHHHHH--cCCCCC
Confidence 89999999999999999974 466443
No 24
>PRK10677 modA molybdate transporter periplasmic protein; Provisional
Probab=98.96 E-value=5.4e-09 Score=94.07 Aligned_cols=136 Identities=18% Similarity=0.235 Sum_probs=89.1
Q ss_pred EEEEeCccc-cccCCCCCCChHHhcCcccCCcEEeeCChHHHHHH----HHHHhCCCCCCCChhhhhhchHHHHHHHHHH
Q 024047 2 VIAYKKSKF-RKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGS----VLKYMGASYNSNNIDLQVAGGKISVQQNLAL 76 (273)
Q Consensus 2 gi~YN~~~v-~~~g~~~p~SW~dL~dp~~kGki~~~d~~~~~~~~----al~~~G~~~~~~~~~~~~~~~~~~~~~~L~~ 76 (273)
+|+|+++.- +...+.+|++|+||.++ ++|+|.|+.....|. +|...|. ++.+.+.+.
T Consensus 110 vl~~~~~~~~~~i~~~~~~~~~dLl~~---~~iai~dP~~~p~G~~a~~~l~~~g~--------------~~~l~~k~~- 171 (257)
T PRK10677 110 VVVAPKASEQKDFTIDKKTDWKSLLNG---GRLAVGDPDHVPAGIYAKEALQKLGA--------------WDTLSPKLA- 171 (257)
T ss_pred EEEEECCCccccccccCccCHHHhcCC---CeEEEcCCCCChHHHHHHHHHHHcCC--------------HHHHHhhhc-
Confidence 677887632 11122357899999863 689999854333332 2222232 222222111
Q ss_pred HhcccccccchhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEEecCCCceeeeeeEEEecCCCCcccccCCCCCCChH
Q 024047 77 LANQARLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPSP 156 (273)
Q Consensus 77 l~~~v~~~~~~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~ 156 (273)
...+ ..+..+.+.+|++++++.|..++.. .++.++..++|+++...-...++|.++++|+
T Consensus 172 ~~~~-----v~~~~~~v~~G~ad~gi~~~s~a~~--~~~~~~~~~~P~e~~~~i~~~~avlk~~~~~------------- 231 (257)
T PRK10677 172 RAED-----VRGALALVERNEAPLGIVYGSDAVA--SKKVKVVGTFPEDSHKPVEYPMAIVKGHNNA------------- 231 (257)
T ss_pred cccc-----HHHHHHHHHcCCCCEEEEEeeeeec--cCCCeEEEECCcccCCcceeeEEEEcCCCCH-------------
Confidence 0011 1356788899999999999777642 3345565678999876666688999998873
Q ss_pred HHHHHHHHHhcHHHhchhh
Q 024047 157 LIHQWIEFCLQTARALPFK 175 (273)
Q Consensus 157 ~A~~FInfllspe~q~~~~ 175 (273)
.|++|+|||+|+|+|..+.
T Consensus 232 ~Ak~Fi~fl~S~eaq~i~~ 250 (257)
T PRK10677 232 TVKAFYDYLKGPQAAAIFK 250 (257)
T ss_pred HHHHHHHHHcCHHHHHHHH
Confidence 6999999999999999885
No 25
>PRK09474 malE maltose ABC transporter periplasmic protein; Reviewed
Probab=98.88 E-value=3.4e-08 Score=93.04 Aligned_cols=160 Identities=20% Similarity=0.211 Sum_probs=95.2
Q ss_pred CEEEEeCccccccCCCCCCChHHhcC--cccC--CcEEee-CChHHHHH-HHHHHhCCC-CCCCCh-----hhhh-hchH
Q 024047 1 MVIAYKKSKFRKHNLAPIEDWKDLWR--PELA--GRISMV-NSPREVIG-SVLKYMGAS-YNSNNI-----DLQV-AGGK 67 (273)
Q Consensus 1 ~gi~YN~~~v~~~g~~~p~SW~dL~d--p~~k--Gki~~~-d~~~~~~~-~al~~~G~~-~~~~~~-----~~~~-~~~~ 67 (273)
.++.||++.+++ +|+||++|.+ .+++ |+..+. +.....+. ..+...|.. ....+. ...+ ....
T Consensus 139 ~~l~ynkdl~~~----~P~Twdel~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~ 214 (396)
T PRK09474 139 LSLIYNKDLVPT----PPKTWEEIPALDKELKAKGKSAIMWNLQEPYFTWPLIAADGGYAFKFENGGYDVKDVGVNNAGA 214 (396)
T ss_pred eeEEEehhhccC----CCcCHHHHHHHHHHHHhCCCceeeccCCchHhHHHHHHccCCeeeccCCCCCCccccCcCCHHH
Confidence 368899999985 8999999986 2333 543332 21111111 112222321 110000 0000 1124
Q ss_pred HHHHHHHHHHhcc-c--ccccchhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEE-ecCC-C----ceeeeeeEEEec
Q 024047 68 ISVQQNLALLANQ-A--RLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV-VPKS-G----ASLWADLWAIPA 138 (273)
Q Consensus 68 ~~~~~~L~~l~~~-v--~~~~~~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~-~P~e-G----~~~~~d~~~I~k 138 (273)
.++.+++.++.+. + .....++..+.|.+|++.+.++++.........+.+++++ +|.. | ......+++|++
T Consensus 215 ~~a~~~~~~l~~~g~~~~~~~~~~~~~~f~~G~~a~~~~g~w~~~~~~~~~~~~~~~~~P~~~g~~~~~~~~~~~~~i~~ 294 (396)
T PRK09474 215 KAGLQFLVDLVKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDKSGINYGVTVLPTFNGKPSKPFVGVLSAGINA 294 (396)
T ss_pred HHHHHHHHHHHHcCCCCCCCChhHHHHHHhcCCeeEEEcCCcchHHHHhcCCceEEEeCCCCCCCCCCceeeeeEEEEeC
Confidence 5677777777643 1 1111234567899999998876655554555556677765 5742 2 234456788999
Q ss_pred CCCCcccccCCCCCCChHHHHHHHH-HHhcHHHhchhhh
Q 024047 139 ASRLETKQIGGRVRGPSPLIHQWIE-FCLQTARALPFKQ 176 (273)
Q Consensus 139 ~a~~~~~~~~~~~~~~~~~A~~FIn-fllspe~q~~~~~ 176 (273)
+++|++ +|.+||+ |+++|+.|..+..
T Consensus 295 ~s~~~e------------aA~~fi~~~l~s~~~~~~~~~ 321 (396)
T PRK09474 295 ASPNKE------------LAKEFLENYLLTDEGLETVNK 321 (396)
T ss_pred CCCCHH------------HHHHHHHHHhcCHHHHHHHhh
Confidence 999988 9999995 9999999988764
No 26
>TIGR03851 chitin_NgcE carbohydrate ABC transporter, N-acetylglucosamine/diacetylchitobiose-binding protein. Members of this protein family are the substrate-binding protein, a lipid-anchored protein of Gram-positive bacteria in all examples found so far, that include NgcE of the chitin-degrader, Streptomyces olivaceoviridis, and close homologs from other species likely to share the same function. NgcE binds both N-acetylglucosamine and the chitin dimer, N,N'-diacetylchitobiose.
Probab=98.84 E-value=4.5e-08 Score=94.06 Aligned_cols=158 Identities=13% Similarity=0.139 Sum_probs=92.9
Q ss_pred EEEEeCccccccCCCCCCChHHhcCc--cc--CCc--EEeeCC--hHHH---HHHHHHHhCCCC----------CC-CCh
Q 024047 2 VIAYKKSKFRKHNLAPIEDWKDLWRP--EL--AGR--ISMVNS--PREV---IGSVLKYMGASY----------NS-NNI 59 (273)
Q Consensus 2 gi~YN~~~v~~~g~~~p~SW~dL~dp--~~--kGk--i~~~d~--~~~~---~~~al~~~G~~~----------~~-~~~ 59 (273)
++.||++.++++|+++|+||++|.+- ++ +|. +++... +... +...+...|... .. .++
T Consensus 164 ~l~YNkdl~~~aGl~~P~Twde~~~~~~~l~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~ 243 (450)
T TIGR03851 164 GLWYSATLFEENGWTPPKTWDEFLALGEEAKAKGIAPFAYAGKHAPYYYRELLLDSAAKIGGDEVVKDIDNLEDGAWKHP 243 (450)
T ss_pred EEEEcHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCcceeecCCCCchhHHHHHHHHHHHhcCHHHHHHHHhcCCCCCCCH
Confidence 68999999999999999999999862 22 232 223211 1111 111111223211 01 112
Q ss_pred hhhhhchHHHHHHHHHHHhcc--c-ccc---cchhHHHHhhcCcEEEEEeccccHHHHHhcC---CCcEEE-ecC-CCc-
Q 024047 60 DLQVAGGKISVQQNLALLANQ--A-RLF---DSTHYLKAFGIGDVWVAVGWSSDVLPAVKRM---SNVAVV-VPK-SGA- 127 (273)
Q Consensus 60 ~~~~~~~~~~~~~~L~~l~~~--v-~~~---~~~~~~~~~~~Gev~va~~~s~~~~~~~~~~---~~v~~~-~P~-eG~- 127 (273)
...++.+++.++... + ... ..++....|.+|++.+.+.++.......... ..+.++ +|. +|.
T Consensus 244 ------~~~~al~~~~~l~~~g~~~~~~~~~~~~~~~~~f~~G~~a~~~~g~w~~~~~~~~~~~~~~~~~~p~P~~~~~~ 317 (450)
T TIGR03851 244 ------AVKAAFTAWEELVKKGYILPGGAGLDHTQSQTAWNQGKAAFYPSGSWLENEMKSQTPADFEMTGAPTPSLTASD 317 (450)
T ss_pred ------HHHHHHHHHHHHHHcCCcCCCCCCCCcHHHHHHHHCCCcEEEEcCccHHHHHhhcCCCCcceeeeecCCCCCcc
Confidence 245667777777542 2 111 1235678899999988765433222232222 233332 453 111
Q ss_pred --e---ee---eeeEEEecCCCCcccccCCCCCCChHHHHHHHHHHhcHHHhchhhhh
Q 024047 128 --S---LW---ADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQE 177 (273)
Q Consensus 128 --~---~~---~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~~ 177 (273)
+ ++ ..+++|+++++|++ +|.+||+||+++|.|..+...
T Consensus 318 ~~~~~~~~~~~g~~~~I~~~s~~~~------------aA~~fl~~l~s~e~~~~~~~~ 363 (450)
T TIGR03851 318 KLPYGALHAAAGEPFIVPAKAKNPA------------GGLEYLRIMLSKEGAANFTEL 363 (450)
T ss_pred cCCcccccccCCceeEEECCCCCHH------------HHHHHHHHHhCHHHHHHHHHh
Confidence 1 11 45799999999988 999999999999999988753
No 27
>PRK10974 glycerol-3-phosphate transporter periplasmic binding protein; Provisional
Probab=98.60 E-value=1.3e-06 Score=83.85 Aligned_cols=171 Identities=16% Similarity=0.166 Sum_probs=89.5
Q ss_pred CEEEEeCccccccCCC---CCCChHHhcCc--ccC--CcE-Eee---CChHH--HHH----HHHHHhCCCCCCCChhhhh
Q 024047 1 MVIAYKKSKFRKHNLA---PIEDWKDLWRP--ELA--GRI-SMV---NSPRE--VIG----SVLKYMGASYNSNNIDLQV 63 (273)
Q Consensus 1 ~gi~YN~~~v~~~g~~---~p~SW~dL~dp--~~k--Gki-~~~---d~~~~--~~~----~al~~~G~~~~~~~~~~~~ 63 (273)
.++.||+++|+++|++ +|+||++|.+- +++ |.. .+. ..... .+. ..+...+......+....+
T Consensus 147 ~~l~YNkdlf~~aGi~~~~~P~Twde~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (438)
T PRK10974 147 PVLYYNKDAFKKAGLDPEQPPKTWQDLAAYAAKLRAAGMKCGYASGWQGWIQLENFSAWHGLPFASKNNGFDGTDAVLEF 226 (438)
T ss_pred ceEEEcHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCCcccccccccchhhhhHHHhcCchhcccCCCcCCCcceEEe
Confidence 3689999999999985 59999999862 332 211 111 10000 000 0111111111110000000
Q ss_pred -hchHHHHHHHHHHHhcc-ccccc--chhHHHHhhcCcEEEEEeccccHHHHHhc-CCCcEEE-ecCC----C----cee
Q 024047 64 -AGGKISVQQNLALLANQ-ARLFD--STHYLKAFGIGDVWVAVGWSSDVLPAVKR-MSNVAVV-VPKS----G----ASL 129 (273)
Q Consensus 64 -~~~~~~~~~~L~~l~~~-v~~~~--~~~~~~~~~~Gev~va~~~s~~~~~~~~~-~~~v~~~-~P~e----G----~~~ 129 (273)
.....++.+++..+... ...+. .++..+.|.+|++.+.+.++.....+... +.++++. +|.. | +..
T Consensus 227 ~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~Gk~a~~~~gsw~~~~~~~~~~~~~~v~~~P~~~~~~g~~~~~~~ 306 (438)
T PRK10974 227 NKPEQVKHIALLEEMNKKGDFTYVGRKDESTEKFYNGDCAITTASSGSLANIRKYAKFNYGVGMMPYDADVKGAPQNAII 306 (438)
T ss_pred CCHHHHHHHHHHHHHHHCCCcccCCCcchHhhHhhcCcceEEecChHHHHHHHhcCCceeeEEeeccCCCcCCCCCCCCC
Confidence 01134556666666432 21121 13456789999998888776655444332 2244442 4531 2 223
Q ss_pred eeeeEEEecC--CCCcccccCCCCCCChHHHHHHHHHHhcHHHhchhhhhhcCCCCC
Q 024047 130 WADLWAIPAA--SRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASP 184 (273)
Q Consensus 130 ~~d~~~I~k~--a~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~~~~~~~~p 184 (273)
...++.|++. ++|++ +|.+||+|+.+++.|..+.. ..++.++
T Consensus 307 gg~~~~~~~~~~~~~~e------------aA~~fi~fl~s~e~~~~~~~-~~g~lP~ 350 (438)
T PRK10974 307 GGASLWVMQGKDKETYK------------GVAKFLDFLAKPENAAEWHQ-KTGYLPI 350 (438)
T ss_pred CCceEEEECCCCHHHHH------------HHHHHHHHHcCHHHHHHHHH-hcCCCCC
Confidence 3344556653 23444 89999999999999998874 3455433
No 28
>COG1653 UgpB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=98.50 E-value=5.8e-07 Score=84.14 Aligned_cols=162 Identities=17% Similarity=0.204 Sum_probs=92.8
Q ss_pred EEEEeCccccccCCCCC-CChHHhcCc--c--cCCc----EEeeCC-----hHHHHHHHHHHhCCCCCCCCh-h-hhhhc
Q 024047 2 VIAYKKSKFRKHNLAPI-EDWKDLWRP--E--LAGR----ISMVNS-----PREVIGSVLKYMGASYNSNNI-D-LQVAG 65 (273)
Q Consensus 2 gi~YN~~~v~~~g~~~p-~SW~dL~dp--~--~kGk----i~~~d~-----~~~~~~~al~~~G~~~~~~~~-~-~~~~~ 65 (273)
++.||+|.++++|+.+| +||++|..- + -++. +.+... ....+...+...|......+. . ..-..
T Consensus 149 ~~~ynkdlf~~aG~~~pp~tw~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 228 (433)
T COG1653 149 ALFYNKDLFKKAGLKPPPKTWDELLAAAKKLKEKGGDVYGIAGGGGWQGEDLFFTFALFLGGAGGGFLDKDGGEAFLNDP 228 (433)
T ss_pred eEEEeHHHHHHhCCCCCCCCHHHHHHHHHHHHhhcCCccceeeccccccchhHHHHHHHhhcCCCceecCCCceeccCCH
Confidence 68999999999999886 999997642 1 1221 222211 111222222233332211110 0 00001
Q ss_pred hHHHHHHHHHHHhcc------cccccchhHHH-HhhcCcEEEEEeccccHHHHHhcC---CCcEEE-ecCC---C---ce
Q 024047 66 GKISVQQNLALLANQ------ARLFDSTHYLK-AFGIGDVWVAVGWSSDVLPAVKRM---SNVAVV-VPKS---G---AS 128 (273)
Q Consensus 66 ~~~~~~~~L~~l~~~------v~~~~~~~~~~-~~~~Gev~va~~~s~~~~~~~~~~---~~v~~~-~P~e---G---~~ 128 (273)
+..++.+.+.++... ...+...+..+ .|.+|++.|.+.+........... .++++. +|.. | ..
T Consensus 229 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~G~~am~~~g~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~ 308 (433)
T COG1653 229 EAVEALEFLKDLYKKGLLPKGASGYGWDDAGALAFGSGKVAMTIDGTWAIGYFKKAAGPKFDIGVAPLPAGPGGGGAAGG 308 (433)
T ss_pred HHHHHHHHHHHHHhcccccCCccccchhhhhhHHHhcCceeeEeeccchhcccccccccccceeEEeCCCCCCCCCccee
Confidence 234566666655442 11222235666 599999998887766554444332 236664 5641 2 23
Q ss_pred eeeeeEEEecCCCC-cccccCCCCCCChHHHHHHHHHHhcHHHhch-hh
Q 024047 129 LWADLWAIPAASRL-ETKQIGGRVRGPSPLIHQWIEFCLQTARALP-FK 175 (273)
Q Consensus 129 ~~~d~~~I~k~a~~-~~~~~~~~~~~~~~~A~~FInfllspe~q~~-~~ 175 (273)
....+++|++.+++ ++ +|.+||+|+.+||.|.. +.
T Consensus 309 ~~~~~~~i~~~~~~~~~------------aA~~f~~~l~s~e~q~~~~~ 345 (433)
T COG1653 309 VGGGGLGVSKKSKKHKE------------AAWKFLEFLTSPEAQAELLA 345 (433)
T ss_pred eccceEEeecCCccchH------------HHHHHHHHhcCCchhhhhhh
Confidence 44446899999888 44 89999999999999986 54
No 29
>COG1613 Sbp ABC-type sulfate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=98.38 E-value=4.6e-06 Score=75.74 Aligned_cols=145 Identities=17% Similarity=0.223 Sum_probs=91.9
Q ss_pred CCCChHHhcCcccCCcEEeeCC-----hHHHHHHHHHHhCCCCCCCChhhhhhchHHHHHHHHHHHhcccccccch--hH
Q 024047 17 PIEDWKDLWRPELAGRISMVNS-----PREVIGSVLKYMGASYNSNNIDLQVAGGKISVQQNLALLANQARLFDST--HY 89 (273)
Q Consensus 17 ~p~SW~dL~dp~~kGki~~~d~-----~~~~~~~al~~~G~~~~~~~~~~~~~~~~~~~~~~L~~l~~~v~~~~~~--~~ 89 (273)
.+.+|.||..|..+ |.++++ .|..+-.+. ......+..|+ .++.++..+|..|+..++++ +.
T Consensus 144 ~I~DW~DL~k~gV~--VItpNPKTSGgARWN~Laaw-a~a~~~~~gde--------aka~~fV~~L~~nvpvld~gaRgA 212 (348)
T COG1613 144 QIRDWDDLVKPGVQ--VITPNPKTSGGARWNYLAAW-AYALKTNGGDE--------AKAKDFVGKLYKNVPVLDTGARGA 212 (348)
T ss_pred ccCchHHhccCCcE--EEcCCCCCCcchhHHHHHHH-HHHHhcCCCCH--------HHHHHHHHHHHhcCccccCCcchh
Confidence 57899999988654 555552 233332221 11111222232 36888889999998888753 44
Q ss_pred HHHhhc-CcEEEEEeccccHHHHH--hcCCCcEEEecCCCceeeee-eEEEecCCCCcccccCCCCCCChHHHHHHHHHH
Q 024047 90 LKAFGI-GDVWVAVGWSSDVLPAV--KRMSNVAVVVPKSGASLWAD-LWAIPAASRLETKQIGGRVRGPSPLIHQWIEFC 165 (273)
Q Consensus 90 ~~~~~~-Gev~va~~~s~~~~~~~--~~~~~v~~~~P~eG~~~~~d-~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInfl 165 (273)
.+-|.+ |--++-++|...++.+. ..+.++++|+|.- .+-.+ ..++....-++ +|..+.|.+|++|+
T Consensus 213 T~tF~qrgiGDVLi~wENEA~la~~e~g~~~feiV~Ps~--si~aEpPVAVVd~~vdk--------kgtr~vAeAyl~yL 282 (348)
T COG1613 213 TTTFVQRGIGDVLIAWENEALLALNELGGDKFEIVTPSV--SILAEPPVAVVDKNVDK--------KGTRKVAEAYLKYL 282 (348)
T ss_pred hHHHHhcCcccEEEEechHHHHHHHHhCCCCccEECCce--eeeecCCeEEEeeeccc--------cccHHHHHHHHHHh
Confidence 455544 66667789999987763 3356899999962 22233 24444333333 36677999999999
Q ss_pred hcHHHhchhhhhhcCCCCCC
Q 024047 166 LQTARALPFKQEVIPGASPS 185 (273)
Q Consensus 166 lspe~q~~~~~~~~~~~~p~ 185 (273)
+|||.|..+++. |..|.
T Consensus 283 ys~~gQ~i~Ak~---~yRP~ 299 (348)
T COG1613 283 YSPEGQEIAAKH---YYRPR 299 (348)
T ss_pred cChHHHHHHHHh---CCCCC
Confidence 999999999863 33554
No 30
>PRK04168 molybdate ABC transporter periplasmic substrate-binding protein; Provisional
Probab=98.26 E-value=1.3e-05 Score=74.98 Aligned_cols=92 Identities=15% Similarity=0.183 Sum_probs=65.3
Q ss_pred hhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEE-EecCCC--------------------------ceeeeeeEEEecC
Q 024047 87 THYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAV-VVPKSG--------------------------ASLWADLWAIPAA 139 (273)
Q Consensus 87 ~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~-~~P~eG--------------------------~~~~~d~~~I~k~ 139 (273)
.+....+.+|++++|+.|..++... .+.| .+|.+- ..-...+++|+++
T Consensus 212 ~~~~~~v~~G~aDagivy~S~a~~~-----~~~~i~lP~~~n~~~~~~~~~y~~~~~~~~~~~~~~~~~pi~y~~ai~~~ 286 (334)
T PRK04168 212 VELLSLLETGNMDYAFIYKSVAVQH-----NLKYIELPDEINLGNYKYADFYKKVSVTVTGTGKTITAKPIVYGITVPKN 286 (334)
T ss_pred hhhHHHHhcCCccEEEEEeeehhhC-----CCCeeECchhhcCCChhhhhhhhEEEEEecCCCccccCceeeeeeeeecC
Confidence 3678889999999999998886531 2333 245421 1224567999999
Q ss_pred CCCcccccCCCCCCChHHHHHHHHHHhcHHHhchhhhhhcCCCC--CChhhhhccCCChHHhc
Q 024047 140 SRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQEVIPGAS--PSALETTLVKLPEELLK 200 (273)
Q Consensus 140 a~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~~~~~~~~--p~~~~~a~~~l~~e~~~ 200 (273)
++|++ +|++|++|++++|.|..+.+ .|+.. |.. ....+|++++.
T Consensus 287 s~n~e------------~A~~Fi~fl~S~e~q~il~~--~Gf~~~~P~~---~~~~~p~~l~~ 332 (334)
T PRK04168 287 APNRE------------AAIEFLKYLLSEPGGEVLEN--NGQPPIVPAI---AFGNVPEELKD 332 (334)
T ss_pred CCCHH------------HHHHHHHHHcCHHHHHHHHH--cCCCCCCCcc---ccCCCCHHHhh
Confidence 99988 89999999999999999864 35433 321 23557777653
No 31
>COG0725 ModA ABC-type molybdate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=97.79 E-value=0.00023 Score=64.24 Aligned_cols=75 Identities=16% Similarity=0.158 Sum_probs=59.8
Q ss_pred hHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEEecCCCceeeeeeEEEecCCCCcccccCCCCCCChHHHHHHHHHHhc
Q 024047 88 HYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQ 167 (273)
Q Consensus 88 ~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInflls 167 (273)
+....+.+|+++.|+.|..++.... +..+-..+|.+...--...++|+++++|++ .|+.|++|+.+
T Consensus 177 ~~l~~V~~G~ad~g~vy~sd~~~~~--~~~~~~~~~~~~~~Pi~y~iav~~~~~~~~------------~A~~f~~fl~s 242 (258)
T COG0725 177 QALAYVETGEADAGFVYVSDALLSK--KVKIVGVFPEDLHSPIVYPIAVLKNAKNPE------------LAKEFVDFLLS 242 (258)
T ss_pred HHHHHHHcCCCCeEEEEEEhhhccC--CceEEEEcccccCCCeEEEEEEEcCCCCHH------------HHHHHHHHHhC
Confidence 6778899999999999988765432 334445677665543466899999999987 89999999999
Q ss_pred HHHhchhhh
Q 024047 168 TARALPFKQ 176 (273)
Q Consensus 168 pe~q~~~~~ 176 (273)
++.++.+.+
T Consensus 243 ~~a~~il~~ 251 (258)
T COG0725 243 PEAQEILEK 251 (258)
T ss_pred HHHHHHHHH
Confidence 999998864
No 32
>COG2182 MalE Maltose-binding periplasmic proteins/domains [Carbohydrate transport and metabolism]
Probab=97.59 E-value=0.0004 Score=66.77 Aligned_cols=156 Identities=14% Similarity=0.175 Sum_probs=88.5
Q ss_pred EEEEeCccccccCCCCCCChHHhcC--cccC----CcE-EeeCCh---HHHHHHHH----HHhCCCCCCCChh-hhh-hc
Q 024047 2 VIAYKKSKFRKHNLAPIEDWKDLWR--PELA----GRI-SMVNSP---REVIGSVL----KYMGASYNSNNID-LQV-AG 65 (273)
Q Consensus 2 gi~YN~~~v~~~g~~~p~SW~dL~d--p~~k----Gki-~~~d~~---~~~~~~al----~~~G~~~~~~~~~-~~~-~~ 65 (273)
.+.|||++|++ +|.||+||.. .+.+ |+. ++.-+. ...++... +++|.+...-++. ..+ ..
T Consensus 152 ~L~YNKdlv~~----~P~T~~el~~~ak~~~~~~~g~~~~~~~~~~~~Y~~y~~~~~~GgyvF~~~~g~~~~~d~gl~n~ 227 (420)
T COG2182 152 ALYYNKDLVPE----PPKTWEELEALAKEAKDKGWGKSHGFLADLTNFYYSYGLIAGYGGYVFGKENGKYDPKDIGLANA 227 (420)
T ss_pred hhheeccccCC----CcccHHHHHHHHHHhhhccCCceeeeecchhhhHhhhhhhccCCcEEecCCCCccchhhccCccc
Confidence 57899999997 8999999985 2333 554 333222 22222111 1111110010111 000 11
Q ss_pred hHHHHHHHHHHHhccccccc--c--hhHHHHhhcCcEEEEEeccccHH--HHHhcCCCcEEE-ecCC--C----ceeeee
Q 024047 66 GKISVQQNLALLANQARLFD--S--THYLKAFGIGDVWVAVGWSSDVL--PAVKRMSNVAVV-VPKS--G----ASLWAD 132 (273)
Q Consensus 66 ~~~~~~~~L~~l~~~v~~~~--~--~~~~~~~~~Gev~va~~~s~~~~--~~~~~~~~v~~~-~P~e--G----~~~~~d 132 (273)
+.......+..+... .... . +-...+|..|+..+.+ +|.+. .....|.++++. +|+- | ..+.+-
T Consensus 228 G~i~g~~~~~~~~~~-g~~~~~~~~~~~~slF~~G~aa~~i--~GPW~~~~~~~~g~n~GvaplP~~~~g~~~~pf~Gv~ 304 (420)
T COG2182 228 GAIEGANFLKSWYKK-GLIPEDVAGDFAQSLFTEGKAAAII--NGPWSISAYKDAGINYGVAPLPTLNNGKKPKPFSGVK 304 (420)
T ss_pred cchHHHHHHHHHHHc-CCCCcccccHHHHHHHhcCCceEEe--cCCCccchhhhcCcccceeecCCCCCCCCcCCcccce
Confidence 233445555555433 1111 1 2367899999966544 34432 222456666664 5641 2 234455
Q ss_pred eEEEecCCCCcccccCCCCCCChHHHHHHHHHHhcHHHhchhhh
Q 024047 133 LWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQ 176 (273)
Q Consensus 133 ~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~ 176 (273)
+++|++.++|++ +|.+|+.|+..++.+.....
T Consensus 305 ~~~Vsa~skn~~------------~A~~f~~~~t~~~~~~~~~~ 336 (420)
T COG2182 305 GYVVSAASKNKE------------AAAKFVKYFTNPKNQKLLYD 336 (420)
T ss_pred EEEecCCCCcHH------------HHHHHHHHhhhHHHHHHHHH
Confidence 789999999998 99999999999999988764
No 33
>PF02030 Lipoprotein_8: Hypothetical lipoprotein (MG045 family)
Probab=97.58 E-value=0.00038 Score=67.47 Aligned_cols=150 Identities=20% Similarity=0.225 Sum_probs=91.7
Q ss_pred CEEEEeCccccccCCCCCCChHHhcCc------cc-CCcEEeeCChHHHHHHHHHHh---CCCCCCCCh----------h
Q 024047 1 MVIAYKKSKFRKHNLAPIEDWKDLWRP------EL-AGRISMVNSPREVIGSVLKYM---GASYNSNNI----------D 60 (273)
Q Consensus 1 ~gi~YN~~~v~~~g~~~p~SW~dL~dp------~~-kGki~~~d~~~~~~~~al~~~---G~~~~~~~~----------~ 60 (273)
.+|+||...++... ..--+|.+++.. ++ ..|+++.|++|.++.++-.+. +.++....+ .
T Consensus 151 LvfaY~~eki~~L~-~~~v~w~~l~k~i~~~~~rfn~~Kl~~IDd~rti~sI~k~~~~~~~nd~~~v~~~~~q~~~~~~~ 229 (493)
T PF02030_consen 151 LVFAYNGEKIKNLK-NEDVSWSDLIKEINNHKDRFNNNKLAIIDDARTIYSISKLIKTENNNDPKNVNPKGSQTNYFKNN 229 (493)
T ss_pred eEEEEcccccchhh-hcCCcHHHHHHHHhhCcccccccceEEeccHHHHHHHHHHHhhccCCCccccccccccccccccc
Confidence 47999999887521 235689998752 12 248999999998776654333 222111110 0
Q ss_pred hhhhchHHHHHHHHHHHhcccccccchhHHHHhhcCcEEEEEeccccHHHHHhcC--------------CCcEEEecCCC
Q 024047 61 LQVAGGKISVQQNLALLANQARLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRM--------------SNVAVVVPKSG 126 (273)
Q Consensus 61 ~~~~~~~~~~~~~L~~l~~~v~~~~~~~~~~~~~~Gev~va~~~s~~~~~~~~~~--------------~~v~~~~P~eG 126 (273)
.+....++.+...+..+.-+ -+++.+.+.|++|+...|++|+||++.+...| .++..+-|+.
T Consensus 230 ~~~~s~i~~~~~~l~~lf~N---~dS~~lln~la~~~~~~aimYNGDalyA~~gGd~~~E~~~~~~~~~~nf~~vr~~~- 305 (493)
T PF02030_consen 230 YESVSYIGLVRNNLSTLFLN---SDSNDLLNNLANGQFDGAIMYNGDALYAANGGDYFEEKDENKLPDSNNFHIVRPKN- 305 (493)
T ss_pred hhhhhhhhhhhcchhhhhcC---CChHHHHHHHhccccceEEEEccHHHHHhcCCCcccccccccCCCCCceeeeccCC-
Confidence 00000111111111111111 23467999999999999999999999875332 2355566653
Q ss_pred ceeeeeeEEEecCC-CCcccccCCCCCCChHHHHHHHHHHhc
Q 024047 127 ASLWADLWAIPAAS-RLETKQIGGRVRGPSPLIHQWIEFCLQ 167 (273)
Q Consensus 127 ~~~~~d~~~I~k~a-~~~~~~~~~~~~~~~~~A~~FInflls 167 (273)
++...|+++|.|-+ .+.+ .||.||++++-
T Consensus 306 tl~~LD~iVinK~~~e~ed------------~AYe~I~~l~~ 335 (493)
T PF02030_consen 306 TLSLLDFIVINKISSENED------------KAYEFINKLAF 335 (493)
T ss_pred CceehhhhhhcccCHHHHH------------HHHHHHHHHHH
Confidence 77788988888744 4444 99999999965
No 34
>COG4150 CysP ABC-type sulfate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=97.41 E-value=0.00039 Score=61.85 Aligned_cols=135 Identities=18% Similarity=0.261 Sum_probs=80.8
Q ss_pred CCCChHHhcCcccCCcEEeeCC-----hHHHHHHHHHHhCCCCCCCChhhhhhchHHHHHHHHHHHhcccccccch--hH
Q 024047 17 PIEDWKDLWRPELAGRISMVNS-----PREVIGSVLKYMGASYNSNNIDLQVAGGKISVQQNLALLANQARLFDST--HY 89 (273)
Q Consensus 17 ~p~SW~dL~dp~~kGki~~~d~-----~~~~~~~al~~~G~~~~~~~~~~~~~~~~~~~~~~L~~l~~~v~~~~~~--~~ 89 (273)
.+.+|+||.+...+ +.++++ .|.++-+|..+.....+ .| -.+..+++.++-+|+..|+.. ..
T Consensus 138 ~IkdW~DLvRdDVk--~iFPNPKTSGNaRYTYLAA~~~a~~af~-gD--------~~k~~ef~~k~~~Nv~VFDTGGRgA 206 (341)
T COG4150 138 NIKDWDDLVRDDVK--LIFPNPKTSGNARYTYLAAWGAADEAFG-GD--------KAKTEEFMTKFLKNVEVFDTGGRGA 206 (341)
T ss_pred cCccHHHHhhhcce--EecCCCCCCCchhhhHHHHHHHHHHhhc-Cc--------HHHHHHHHHHHhcCCceeccCCccc
Confidence 47899999876554 445542 34444333322211111 11 246788999999999999852 22
Q ss_pred H-HHhhcCcEEEEEeccccHHHHHhc--CCCcEEEecCC-----CceeeeeeEEEecCCCCcccccCCCCCCChHHHHHH
Q 024047 90 L-KAFGIGDVWVAVGWSSDVLPAVKR--MSNVAVVVPKS-----GASLWADLWAIPAASRLETKQIGGRVRGPSPLIHQW 161 (273)
Q Consensus 90 ~-~~~~~Gev~va~~~s~~~~~~~~~--~~~v~~~~P~e-----G~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~F 161 (273)
. .-+..|=-++-+++.......+++ ...++.++|+- =.+.|+|-.+=- ||.-++|+.+
T Consensus 207 TTtFveRglGDVLItFEsE~~~irkqyg~d~~evVvP~~siLAEFPVa~Vdkvv~k--------------~Gt~~~AkaY 272 (341)
T COG4150 207 TTTFVERGLGDVLITFESEVNNIRKQYGADKFEVVVPKTSILAEFPVAWVDKVVDK--------------NGTEKAAKAY 272 (341)
T ss_pred cchhhhhccccEEEEeehhhccHHHHhCcccceEeccchhhhhhcchhHHhhhhhh--------------cccHHHHHHH
Confidence 3 333333333445555555444333 35688899973 234555543321 3555699999
Q ss_pred HHHHhcHHHhchhhh
Q 024047 162 IEFCLQTARALPFKQ 176 (273)
Q Consensus 162 Infllspe~q~~~~~ 176 (273)
+||++||+.|..+++
T Consensus 273 l~~LYsp~~Q~i~a~ 287 (341)
T COG4150 273 LNYLYSPQAQTIIAE 287 (341)
T ss_pred HHHhcCcHHHHHHHH
Confidence 999999999999984
No 35
>TIGR03730 tungstate_WtpA tungstate ABC transporter binding protein WtpA. Members of this protein family are tungstate (and, more weakly, molybdate) binding proteins of tungstate(/molybdate) ABC transporters, as first characterized in Pyrococcus furiosus. Model seed members and cutoffs, pending experimental evidence for more distant homologs, were chosen such that this model identifies select archaeal proteins, excluding weaker archaeal and all bacterial homologs. Note that this family is homologous to molybdate transporters, and that at least one other family of tungstate transporter binding protein, TupA, also exists.
Probab=96.66 E-value=0.0079 Score=54.76 Aligned_cols=66 Identities=14% Similarity=0.136 Sum_probs=44.4
Q ss_pred hhHHHHhhcCcEEEEEeccccHHHHHh------------------cCCCcEEEe--c---CCCceeeeeeEEEecCCCCc
Q 024047 87 THYLKAFGIGDVWVAVGWSSDVLPAVK------------------RMSNVAVVV--P---KSGASLWADLWAIPAASRLE 143 (273)
Q Consensus 87 ~~~~~~~~~Gev~va~~~s~~~~~~~~------------------~~~~v~~~~--P---~eG~~~~~d~~~I~k~a~~~ 143 (273)
.+....+.+|++++|+.|..++..... .-..+.++. | ..|.++ ...++|+++++|+
T Consensus 185 ~~~~~~v~sG~aD~g~vY~S~A~~~~~~~~~lP~~~n~~~~~~~~~y~~v~~~~~~~~~~~~~~pi-~y~~ai~~~~~~~ 263 (273)
T TIGR03730 185 VELLSLLESGEIDYAFIYKSVAVQHGLKYIELPDEINLGDYSYADFYKKVSVELGGGKKTITGKPI-VYGITVPKNAPNR 263 (273)
T ss_pred HhHHHHHHCCCCcEEEEEeeecccCCCceEECChhccCCChhhhcccceEEEEecCCCceEecCCE-EEEEeccCCCCCH
Confidence 467888999999999999887653200 001223322 2 112333 4578999999998
Q ss_pred ccccCCCCCCChHHHHHHHHHH
Q 024047 144 TKQIGGRVRGPSPLIHQWIEFC 165 (273)
Q Consensus 144 ~~~~~~~~~~~~~~A~~FInfl 165 (273)
+ +|++|++||
T Consensus 264 ~------------~a~~F~~fl 273 (273)
T TIGR03730 264 E------------EAIEFLKFL 273 (273)
T ss_pred H------------HHHHHHhhC
Confidence 8 899999995
No 36
>COG4588 AcfC Accessory colonization factor AcfC, contains ABC-type periplasmic domain [General function prediction only]
Probab=95.39 E-value=0.068 Score=46.56 Aligned_cols=89 Identities=16% Similarity=0.167 Sum_probs=66.8
Q ss_pred HHHHHHHhccccccc--chhHHHHhhc-CcEEEEEeccccHHHHHhcCCCcEEEecCC-CceeeeeeEEEecCCCCcccc
Q 024047 71 QQNLALLANQARLFD--STHYLKAFGI-GDVWVAVGWSSDVLPAVKRMSNVAVVVPKS-GASLWADLWAIPAASRLETKQ 146 (273)
Q Consensus 71 ~~~L~~l~~~v~~~~--~~~~~~~~~~-Gev~va~~~s~~~~~~~~~~~~v~~~~P~e-G~~~~~d~~~I~k~a~~~~~~ 146 (273)
.+.+..+++|+..|. +....++|.+ -++++-++|..-. ..+++++-+++.| ...+|-|.-++++.-.+++
T Consensus 155 ie~v~afR~NI~~fapnSgaArkaf~~~~~aDawItW~dWa----~snpdig~~v~~~~d~vIyRd~nv~~~~~a~~e-- 228 (252)
T COG4588 155 IETVAAFRKNIVAFAPNSGAARKAFENQPDADAWITWADWA----KSNPDIGDAVEIEKDYVIYRDFNVALAKDANKE-- 228 (252)
T ss_pred HHHHHHHHhceEEEccCCchHHHHHhcCCCCceEEEecchh----hhCCchhceeecccceEEeeecceeecCCCCHH--
Confidence 466788899998886 3467788888 5577778886533 2356676666654 5678888767776666765
Q ss_pred cCCCCCCChHHHHHHHHHHhcHHHhchhhh
Q 024047 147 IGGRVRGPSPLIHQWIEFCLQTARALPFKQ 176 (273)
Q Consensus 147 ~~~~~~~~~~~A~~FInfllspe~q~~~~~ 176 (273)
|..|++|+.|.|.|..+..
T Consensus 229 -----------a~~F~dyl~S~EAq~ifkk 247 (252)
T COG4588 229 -----------ARDFADYLQSDEAQKIFKK 247 (252)
T ss_pred -----------HHHHHHHHhhHHHHHHHHh
Confidence 9999999999999998864
No 37
>PF12727 PBP_like: PBP superfamily domain; InterPro: IPR024370 This entry represents members of the periplasmic binding domain superfamily []. It is often associated with a helix-turn-helix domain.
Probab=84.05 E-value=12 Score=32.14 Aligned_cols=58 Identities=10% Similarity=0.116 Sum_probs=38.3
Q ss_pred hhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEE-ecCCCceeeeeeEEEecCCCCcccccCCCCCCChHHHHHHHHHH
Q 024047 87 THYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV-VPKSGASLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFC 165 (273)
Q Consensus 87 ~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~-~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInfl 165 (273)
.+....+++|..++|++....+. +-..++|+ +..| ...++|++..-... ...+||+|+
T Consensus 134 ~~vA~aVa~G~AD~G~g~~~~A~----~~~gL~Fvpl~~E-----~~dlv~~~~~~~~~------------~vq~ll~~l 192 (193)
T PF12727_consen 134 LAVAAAVASGKADAGIGIRAAAE----EFYGLDFVPLAEE-----RYDLVIRREDLEDP------------AVQALLDFL 192 (193)
T ss_pred HHHHHHHHcCCCCEEeehHHHHH----hhcCCCcEEcccc-----ceEEEEEhhHcCCH------------HHHHHHHHh
Confidence 46789999999999997532221 11256665 2222 23468888876555 799999987
No 38
>COG2998 TupB ABC-type tungstate transport system, permease component [Coenzyme metabolism]
Probab=76.92 E-value=4.4 Score=36.12 Aligned_cols=72 Identities=6% Similarity=-0.069 Sum_probs=43.4
Q ss_pred hcCcEEEEEeccccHHHHHhcCCCcEEEecCCCceeeeeeEEEe--cCCCCcccccCCCCCCChHHHHHHHHHHhcHHHh
Q 024047 94 GIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIP--AASRLETKQIGGRVRGPSPLIHQWIEFCLQTARA 171 (273)
Q Consensus 94 ~~Gev~va~~~s~~~~~~~~~~~~v~~~~P~eG~~~~~d~~~I~--k~a~~~~~~~~~~~~~~~~~A~~FInfllspe~q 171 (273)
++..-...++-.|.....+. -+.+..++-.+-.++.+.++.+. +..++.. ...|.+||+|+++++.|
T Consensus 187 A~Ek~aytLtDrgTylaYr~-r~~L~iv~~gd~~L~N~Ysvi~vNP~r~~~vn----------y~~A~kfi~w~~s~~gq 255 (280)
T COG2998 187 ANEKKAYTLTDRGTYLAYRN-RPTLVIVLEGDPSLFNPYSVIAVNPKRVKGVN----------YTAATKFIEWLMSEKGQ 255 (280)
T ss_pred hhhhceeEeeccceeeEecC-ccceEEEecCCccccCceeEEEEchhcCCCcC----------chHHHHHHHHHhhHHHH
Confidence 34444444444444433322 24455565544566666665554 5555433 34899999999999999
Q ss_pred chhhh
Q 024047 172 LPFKQ 176 (273)
Q Consensus 172 ~~~~~ 176 (273)
..+++
T Consensus 256 ~~Ia~ 260 (280)
T COG2998 256 NLIAE 260 (280)
T ss_pred HHHhh
Confidence 88763
No 39
>PRK11063 metQ DL-methionine transporter substrate-binding subunit; Provisional
Probab=73.25 E-value=15 Score=33.29 Aligned_cols=79 Identities=5% Similarity=0.006 Sum_probs=54.5
Q ss_pred chhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEEecCCCceeeeeeEEEecCCCCcccccCCCCCCChHHHHHHHHHH
Q 024047 86 STHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFC 165 (273)
Q Consensus 86 ~~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInfl 165 (273)
..+...+|.+|+++.++.|...+..+......=..++-.... -+.+.+++.+.-.|++ ..+++++-+
T Consensus 184 ~~~~~~al~~g~vDaa~i~~~~a~~a~~~~~~~~l~~e~~~~-~~~~~~~v~~~~~~~~------------~~~~l~~a~ 250 (271)
T PRK11063 184 APQLPRSLDDAQIALAVINTTYASQIGLTPAKDGIFVEDKDS-PYVNLIVAREDNKDAE------------NVKKFVQAY 250 (271)
T ss_pred HHHHHHhcccccccEEEEChHHHHHcCCCCCCCeeEECCCCC-CeEEEEEECCcccCCH------------HHHHHHHHH
Confidence 457889999999999999977666653222111122222222 3557777777766665 899999999
Q ss_pred hcHHHhchhhhh
Q 024047 166 LQTARALPFKQE 177 (273)
Q Consensus 166 lspe~q~~~~~~ 177 (273)
.|+|++..+.+.
T Consensus 251 ~s~~v~~~i~~~ 262 (271)
T PRK11063 251 QSDEVYEAANKV 262 (271)
T ss_pred cCHHHHHHHHHH
Confidence 999999988643
No 40
>TIGR00363 lipoprotein, YaeC family. This family of putative lipoproteins contains a consensus site for lipoprotein signal sequence cleavage. Included in this family is the E. coli hypothetical protein yaeC. About half of the proteins between the noise and trusted cutoffs contain the consensus lipoprotein signature and may belong to this family.
Probab=73.09 E-value=15 Score=33.13 Aligned_cols=80 Identities=9% Similarity=0.033 Sum_probs=53.1
Q ss_pred cchhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEEecCCCceeeeeeEEEecCCCCcccccCCCCCCChHHHHHHHHH
Q 024047 85 DSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEF 164 (273)
Q Consensus 85 ~~~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInf 164 (273)
...+....|.+|++++++.|...+..+...-..=...+.....+ +.+.+++.++-.+.+ ..++|++.
T Consensus 170 ~~~~~~~al~~g~vDaa~v~~~~~~~agl~~~~~~i~~e~~~~~-~~n~l~~r~~~~~~~------------~~~~lv~~ 236 (258)
T TIGR00363 170 ETSQLPRALDDPKVDLAVINTTYAGQVGLNPQDDGVFVEDKDSP-YVNIIVSREDNKDAE------------NVKDFIQS 236 (258)
T ss_pred CHHHHHHHhhcccccEEEEChHHHHHcCCCcCcCceeecCCCCC-eeEEEEEcCCccCCH------------HHHHHHHH
Confidence 34567799999999999999887666522210111222111122 346677777655554 89999999
Q ss_pred HhcHHHhchhhhh
Q 024047 165 CLQTARALPFKQE 177 (273)
Q Consensus 165 llspe~q~~~~~~ 177 (273)
+-|++++..+.+.
T Consensus 237 ~~s~~v~~~i~~~ 249 (258)
T TIGR00363 237 YQSEEVYQAAQKH 249 (258)
T ss_pred HcCHHHHHHHHHH
Confidence 9999999988654
No 41
>PF09084 NMT1: NMT1/THI5 like; InterPro: IPR015168 This entry is found in the NMT1 and THI5 proteins. These proteins are proposed to be required for the biosynthesis of the pyrimidine moiety of thiamine [, , ]. They are regulated by thiamine []. ; PDB: 2X26_A 3E4R_A 3KSJ_A 3KSX_A 3UIF_A 4DDD_A 1US4_A 1US5_A 3IX1_B 2X7P_A ....
Probab=56.92 E-value=72 Score=26.74 Aligned_cols=69 Identities=10% Similarity=0.124 Sum_probs=43.4
Q ss_pred hhHHHHhhcCcEEEEEecccc--HHHHHhcCCCcEEEec-CCCc-eeeeeeEEEecC--CCCcccccCCCCCCChHHHHH
Q 024047 87 THYLKAFGIGDVWVAVGWSSD--VLPAVKRMSNVAVVVP-KSGA-SLWADLWAIPAA--SRLETKQIGGRVRGPSPLIHQ 160 (273)
Q Consensus 87 ~~~~~~~~~Gev~va~~~s~~--~~~~~~~~~~v~~~~P-~eG~-~~~~d~~~I~k~--a~~~~~~~~~~~~~~~~~A~~ 160 (273)
.+...+|.+|+++++..|... ...+...+..+.+... ..|. ..-.+.++.... ..|++ .+++
T Consensus 130 ~~~~~al~~g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe------------~~~~ 197 (216)
T PF09084_consen 130 PELAQALLSGQVDAAILWYPPWEPYEIASKGKKLRVLELSDYGPPNYPVSVLVARDEFLEKNPE------------AVKA 197 (216)
T ss_dssp HHHHHHHHTTSSSEEEEEEECTCHHHHHHCCSCEEEEEGGGCCGGCS-SEEEEEEHHHHHHSHH------------HHHH
T ss_pred hhhhhhhhcCCCCEEEEccCChHHHHHHHcCCceeeeeccccCcccccceEEEEchHHHHHCHH------------HHHH
Confidence 345568999999988855443 5566677777776644 4554 344444554443 23454 8899
Q ss_pred HHHHHhc
Q 024047 161 WIEFCLQ 167 (273)
Q Consensus 161 FInflls 167 (273)
|+.-+..
T Consensus 198 f~~a~~~ 204 (216)
T PF09084_consen 198 FLKAYAK 204 (216)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9876665
No 42
>COG1910 Periplasmic molybdate-binding protein/domain [Inorganic ion transport and metabolism]
Probab=53.63 E-value=57 Score=28.86 Aligned_cols=66 Identities=11% Similarity=0.072 Sum_probs=42.4
Q ss_pred hhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEE-ecCCCceeeeeeEEEecCCCCcccccCCCCCCChHHHHHHHHHH
Q 024047 87 THYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV-VPKSGASLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFC 165 (273)
Q Consensus 87 ~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~-~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInfl 165 (273)
+.....+++|++++|++--.. .+.-.++|+ +-+| -.-++|.|.--.++ .-++|++-+
T Consensus 140 ~avA~aVa~G~AD~GvGlr~~-----A~~~gL~Fipl~~E-----~YD~virke~~~~~------------~vr~fi~~L 197 (223)
T COG1910 140 DAVASAVASGRADAGVGLRHA-----AEKYGLDFIPLGDE-----EYDFVIRKERLDKP------------VVRAFIKAL 197 (223)
T ss_pred HHHHHHHHcCCCCccccHHHH-----HHHcCCceEEcccc-----eEEEEEehhHccCH------------HHHHHHHHh
Confidence 457889999999999873221 222467776 2233 12467777655544 799999999
Q ss_pred hcHHHhchh
Q 024047 166 LQTARALPF 174 (273)
Q Consensus 166 lspe~q~~~ 174 (273)
-|.+..+.+
T Consensus 198 ~s~~~~~~l 206 (223)
T COG1910 198 KSEGFAANL 206 (223)
T ss_pred ccccccccC
Confidence 884444433
No 43
>cd00134 PBPb Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of substrates, such as, amino acids, peptides, sugars, vitamins and inorganic ions. PBPs have two cell-membrane translocation functions: bind substrate, and interact with the membrane bound complex. A diverse group of periplasmic transport receptors for lysine/arginine/ornithine (LAO), glutamine, histidine, sulfate, phosphate, molybdate, and methanol are included in the PBPb CD.
Probab=47.73 E-value=58 Score=26.08 Aligned_cols=67 Identities=12% Similarity=0.067 Sum_probs=43.9
Q ss_pred hhHHHHhhcCcEEEEEeccccHHHHHhcC-CCcEEEecCCCceeeeeeEEEecCCCCcccccCCCCCCChHHHHHHHHHH
Q 024047 87 THYLKAFGIGDVWVAVGWSSDVLPAVKRM-SNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFC 165 (273)
Q Consensus 87 ~~~~~~~~~Gev~va~~~s~~~~~~~~~~-~~v~~~~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInfl 165 (273)
++...++.+|++++++.+...+.....+. ..+.++-+. .......+++.+...+++ ...+|-+++
T Consensus 136 ~~~~~~l~~g~~d~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~------------l~~~~~~~l 201 (218)
T cd00134 136 AEALAALENGRADAVIVDEIALAALLKKHPPELKIVGPS--IDLEPLGFGVAVGKDNKE------------LLDAVNKAL 201 (218)
T ss_pred HHHHHHHHcCCccEEEeccHHHHHHHHhcCCCcEEeccc--cCCCccceEEEEcCCCHH------------HHHHHHHHH
Confidence 46889999999999999877776655443 455544322 112233456666666655 788888888
Q ss_pred hc
Q 024047 166 LQ 167 (273)
Q Consensus 166 ls 167 (273)
.+
T Consensus 202 ~~ 203 (218)
T cd00134 202 KE 203 (218)
T ss_pred HH
Confidence 73
No 44
>COG4521 TauA ABC-type taurine transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=46.13 E-value=28 Score=31.61 Aligned_cols=60 Identities=23% Similarity=0.211 Sum_probs=44.5
Q ss_pred ccccccc-hhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEEecCCCceeeeeeEEEecCC
Q 024047 80 QARLFDS-THYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAAS 140 (273)
Q Consensus 80 ~v~~~~~-~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~~P~eG~~~~~d~~~I~k~a 140 (273)
.+|.|++ .+...++++|++.+|...|.....+..++.++..++-. +.+.-.+.+++-+|+
T Consensus 60 DWRkFdSG~~vv~AlASGdvqiG~iGSsplaaAaSr~vpie~f~~~-~~ig~sEALVvr~gs 120 (334)
T COG4521 60 DWRKFDSGASIVRALASGDVQIGNIGSSPLAAAASRQVPIEVFLLA-SQIGNSEALVVRKGS 120 (334)
T ss_pred chhhcCchhHHHHHHhcCCccccccCCchhhHHhhcCCceEEeehh-hhcCccceeeeecCC
Confidence 3678886 57899999999999999888888888888888865432 234445566666644
No 45
>smart00062 PBPb Bacterial periplasmic substrate-binding proteins. bacterial proteins, eukaryotic ones are in PBPe
Probab=44.69 E-value=1e+02 Score=24.41 Aligned_cols=53 Identities=17% Similarity=0.122 Sum_probs=32.7
Q ss_pred hhHHHHhhcCcEEEEEeccccHHHHHhcC--CCcEEEecCCCceeeeeeEEEecCC
Q 024047 87 THYLKAFGIGDVWVAVGWSSDVLPAVKRM--SNVAVVVPKSGASLWADLWAIPAAS 140 (273)
Q Consensus 87 ~~~~~~~~~Gev~va~~~s~~~~~~~~~~--~~v~~~~P~eG~~~~~d~~~I~k~a 140 (273)
.+...++.+|++++++.+.........++ ..+.+ ++........-.+++.++.
T Consensus 137 ~~~~~~l~~g~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 191 (219)
T smart00062 137 AEALAALKAGRADAAVADAPALAALVKQHGLPELKI-VGDPLDTPEGYAFAVRKGD 191 (219)
T ss_pred HHHHHHhhcCcccEEEeccHHHHHHHHhcCCCceee-ccCCCCCCcceEEEEECCC
Confidence 46778999999999999888766555444 33333 3332222133456666664
No 46
>PRK09861 cytoplasmic membrane lipoprotein-28; Provisional
Probab=42.71 E-value=1e+02 Score=27.90 Aligned_cols=79 Identities=6% Similarity=0.025 Sum_probs=49.5
Q ss_pred chhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEEecCCCceeeeeeEEEecCCCCcccccCCCCCCChHHHHHHHHHH
Q 024047 86 STHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFC 165 (273)
Q Consensus 86 ~~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInfl 165 (273)
..+....+.+|.+++++.|...+..+-.+...=.......-. -+...+++.++-.+.+ ..++|+..+
T Consensus 185 ~~q~~~al~dg~vD~a~i~~~~~~~ag~~~~~~~l~~e~~~~-~~~n~~~~r~~~~~~~------------~~~~lv~~~ 251 (272)
T PRK09861 185 GAQLPRVLDDPKVDVAIISTTYIQQTGLSPVHDSVFIEDKNS-PYVNILVAREDNKNAE------------NVKEFLQSY 251 (272)
T ss_pred HHHhHhhccCcccCEEEEchhHHHHcCCCcccceeEEcCCCC-CeEEEEEEcCCccCCH------------HHHHHHHHH
Confidence 457888899999999999877665432111010112211111 2445566665544433 899999999
Q ss_pred hcHHHhchhhhh
Q 024047 166 LQTARALPFKQE 177 (273)
Q Consensus 166 lspe~q~~~~~~ 177 (273)
-|+|+...+.+.
T Consensus 252 ~s~~v~~~i~~~ 263 (272)
T PRK09861 252 QSPEVAKAAETI 263 (272)
T ss_pred cCHHHHHHHHHH
Confidence 999999988643
No 47
>PF03401 TctC: Tripartite tricarboxylate transporter family receptor; InterPro: IPR005064 Bordetella pertussis, the causative agent of human whooping cough (pertussis), is an obligate human pathogen with diverse high-affinity transport systems for the assimilation of iron, a biometal that is essential for growth []. Periplasmic binding proteins of a new family, particularly well represented in this organism (and more generally in beta-proteobacteria), have been called Bug receptors []. They adopt a characteristic Venus flytrap fold with two globular domains bisected by a ligand-binding cleft. The family is specific for carboxylated solutes, with a characteristic mode of binding involving two highly conserved beta strand-beta turn-alpha helix motifs originating from each domain. These two motifs form hydrogen bonds with a carboxylate group of the ligand, both directly and via conserved water molecules, and have thus been termed the carboxylate pincers. Domain 1 recognises the ligand and the carboxylate group serves as an initial anchoring point. Domain 2 discriminates between productively and non-productively bound ligands as proper interactions with this domain is needed for the of the closed conformation []. BugE has a glutamate bound ligand. No charged residues are involved in glutamate binding by BugE, unlike what has been described for all glutamate receptors reported so far. The Bug architecture is highly conserved despite limited sequence identity [].; GO: 0030288 outer membrane-bounded periplasmic space; PDB: 2QPQ_C 2DVZ_A 2F5X_A.
Probab=41.82 E-value=2.1e+02 Score=25.63 Aligned_cols=36 Identities=8% Similarity=-0.167 Sum_probs=19.5
Q ss_pred eeeEEEecCCCCcccccCCCCCCChHHHHHHHHHHhcHHHhchhh
Q 024047 131 ADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFK 175 (273)
Q Consensus 131 ~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~ 175 (273)
..++.+|++.+... .......|-.-+-+||.+..+.
T Consensus 205 ~~g~~~p~gtp~~~---------~~~l~~a~~~~~~~pe~~~~~~ 240 (274)
T PF03401_consen 205 WRGLFAPKGTPDEI---------VDKLADAIKKALEDPEFQEFLE 240 (274)
T ss_dssp EEEEEEETTS-HHH---------HHHHHHHHHHHHT-HHHHHHHH
T ss_pred eeeeecCCCCCHHH---------HHHHHHHHHHHhCCHHHHHHHH
Confidence 34688899987532 0113444444555677777664
No 48
>PF13379 NMT1_2: NMT1-like family; PDB: 2G29_A 3UN6_A 2I4C_A 2I49_A 2I4B_A 2I48_A 3QSL_A.
Probab=36.02 E-value=1.8e+02 Score=25.34 Aligned_cols=115 Identities=16% Similarity=0.199 Sum_probs=62.1
Q ss_pred CCCChHHhcCccc--CCc-EEeeC--ChHHHH-HHHHHHhCCCCCCCChhhhhhchHHHHHHHHHHHhcccccccchhHH
Q 024047 17 PIEDWKDLWRPEL--AGR-ISMVN--SPREVI-GSVLKYMGASYNSNNIDLQVAGGKISVQQNLALLANQARLFDSTHYL 90 (273)
Q Consensus 17 ~p~SW~dL~dp~~--kGk-i~~~d--~~~~~~-~~al~~~G~~~~~~~~~~~~~~~~~~~~~~L~~l~~~v~~~~~~~~~ 90 (273)
..+||+||..... +|+ |++.. +..+.+ ..+|...|.++.. +. ++..+...+..
T Consensus 105 ~~~~~~dl~~~~~~~kGk~i~~~~~gs~~~~~l~~~l~~~Gl~~~~-dv--------------------~~~~~~~~~~~ 163 (252)
T PF13379_consen 105 DIKSLADLIKKRKAQKGKKIAVPFPGSTHDMLLRYLLKKAGLDPKD-DV--------------------TLVNVPPPEMV 163 (252)
T ss_dssp TTCCGHHHHHTCCSCSTEEEEESSTTSHHHHHHHHHHHHTT--TTT-SS--------------------EEEE--GHHHH
T ss_pred CccCHHHHHhhhcccCCcEEEEcCCCCHHHHHHHHHHHhCCCCccc-ce--------------------EEEecCHHHHH
Confidence 6799999976432 674 55533 223332 3345566765411 00 12233346788
Q ss_pred HHhhcCcEEEEEeccccHHHHHhcCCCcEEEecCCCceee---eee-EEEecC--CCCcccccCCCCCCChHHHHHHHHH
Q 024047 91 KAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLW---ADL-WAIPAA--SRLETKQIGGRVRGPSPLIHQWIEF 164 (273)
Q Consensus 91 ~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~~P~eG~~~~---~d~-~~I~k~--a~~~~~~~~~~~~~~~~~A~~FInf 164 (273)
++|.+|+++.++.|......+..+|.-....-.. -+| ..+ ++..+. ..|++ .+.+|++-
T Consensus 164 ~al~~g~iDa~~~~eP~~~~~~~~g~g~~v~~~~---~~~~~~p~~~~~~~~~~~~~~p~------------~v~~~~~a 228 (252)
T PF13379_consen 164 AALRAGEIDAAVLWEPFASQAEAKGIGKIVADSG---DVWGNHPCCVIVARRDFLEENPE------------AVKAFLEA 228 (252)
T ss_dssp HHHHTTS-SEEEEETTHHHHHHHTTS-EEEEEHH---HCSTT-B-EEEEEEHHHHHH-HH------------HHHHHHHH
T ss_pred HHHhCCCcCEEEecCCHHHHHHhccCCeEEEEec---cccCCCCeEEEEECHHHHHHCHH------------HHHHHHHH
Confidence 9999999999999988887777666421211111 112 222 333333 24666 89999887
Q ss_pred Hhc
Q 024047 165 CLQ 167 (273)
Q Consensus 165 lls 167 (273)
+.+
T Consensus 229 ~~~ 231 (252)
T PF13379_consen 229 LQE 231 (252)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 49
>PF11324 DUF3126: Protein of unknown function (DUF3126); InterPro: IPR021473 This family of proteins with unknown function appear to be restricted to Alphaproteobacteria.
Probab=31.34 E-value=26 Score=24.76 Aligned_cols=13 Identities=31% Similarity=0.570 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHH
Q 024047 251 MKRVQHYLSSLIQ 263 (273)
Q Consensus 251 ~~~~~~~~~~~~~ 263 (273)
++|||.||.++|.
T Consensus 2 i~klq~yLr~~f~ 14 (63)
T PF11324_consen 2 IKKLQAYLRRTFG 14 (63)
T ss_pred hHHHHHHHHHHhC
Confidence 5899999999984
No 50
>PF09084 NMT1: NMT1/THI5 like; InterPro: IPR015168 This entry is found in the NMT1 and THI5 proteins. These proteins are proposed to be required for the biosynthesis of the pyrimidine moiety of thiamine [, , ]. They are regulated by thiamine []. ; PDB: 2X26_A 3E4R_A 3KSJ_A 3KSX_A 3UIF_A 4DDD_A 1US4_A 1US5_A 3IX1_B 2X7P_A ....
Probab=31.21 E-value=88 Score=26.20 Aligned_cols=36 Identities=22% Similarity=0.276 Sum_probs=30.5
Q ss_pred hhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEEe
Q 024047 87 THYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVV 122 (273)
Q Consensus 87 ~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~~ 122 (273)
.+..+++.+|+++++++....+...+.+|.++..+.
T Consensus 32 ~~~~~~l~~G~~D~~~~~~~~~~~~~~~g~~~~~i~ 67 (216)
T PF09084_consen 32 GDVLEALASGKADIAVAGPDAVLFARAKGADIKIIA 67 (216)
T ss_dssp HHHHHHHHTTSHSEEEEECHHHHHHHHTTSTEEEEE
T ss_pred hHHHHHHhcCCceEEeccchHHHHHHhcCCeeEEEE
Confidence 578899999999999998877787888898887653
No 51
>PF03202 Lipoprotein_10: Putative mycoplasma lipoprotein, C-terminal region; InterPro: IPR004890 This domain is found along with a central domain (IPR004984 from INTERPRO) in a group of Mycoplasma lipoproteins of unknown function.
Probab=30.47 E-value=49 Score=26.97 Aligned_cols=27 Identities=15% Similarity=0.337 Sum_probs=20.7
Q ss_pred eeeEEEecCCCCcccccCCCCCCChHHHHHHHHHHhcHH
Q 024047 131 ADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTA 169 (273)
Q Consensus 131 ~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInfllspe 169 (273)
+..++|-++.+.-. ++++|++|+++-.
T Consensus 6 PsLIGIhaNekeD~------------aTkkFv~Wll~~~ 32 (135)
T PF03202_consen 6 PSLIGIHANEKEDK------------ATKKFVNWLLNSK 32 (135)
T ss_pred CceeeeccCccccH------------HHHHHHHHHHcCc
Confidence 34678888776544 8999999999853
No 52
>TIGR03871 ABC_peri_MoxJ_2 quinoprotein dehydrogenase-associated probable ABC transporter substrate-binding protein. This protein family, a sister family to TIGR03870, is found more broadly. It occurs a range of PQQ-biosynthesizing species, not just in known methanotrophs. Interpretation of evidence by homology and by direct experimental work suggest two different roles. By homology, this family appears to be the periplasmic substrate-binding protein of an ABC transport family. However, mutational studies and direct characterization for some sequences related to this family suggests this family may act as a maturation chaperone or additional subunit of a methanol dehydrogenase-like enzyme.
Probab=26.86 E-value=3.8e+02 Score=22.45 Aligned_cols=66 Identities=12% Similarity=0.087 Sum_probs=39.0
Q ss_pred hhHHHHhhcCcEEEEEeccccHHHHHh-cCCCcEEE-ecC--CCc-eeeeeeEEEecCCCCcccccCCCCCCChHHHHHH
Q 024047 87 THYLKAFGIGDVWVAVGWSSDVLPAVK-RMSNVAVV-VPK--SGA-SLWADLWAIPAASRLETKQIGGRVRGPSPLIHQW 161 (273)
Q Consensus 87 ~~~~~~~~~Gev~va~~~s~~~~~~~~-~~~~v~~~-~P~--eG~-~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~F 161 (273)
.+...++.+|++++++.+...+....+ .+.++.+. .+. .+. ..+.-+++++++. .+ ++..|
T Consensus 144 ~~~~~~l~~G~~Da~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~------------l~~~~ 209 (232)
T TIGR03871 144 GRMVEDLAAGEIDVAIVWGPIAGYFAKQAGPPLVVVPLLPEDGGIPFDYRIAMGVRKGD--KA------------WKDEL 209 (232)
T ss_pred HHHHHHHHcCCcCEEEeccHHHHHHHHhCCCCceeeccccCCCCCCccceEEEEEecCC--HH------------HHHHH
Confidence 467899999999999987655433333 33344432 121 111 1223356667653 34 78888
Q ss_pred HHHHh
Q 024047 162 IEFCL 166 (273)
Q Consensus 162 Infll 166 (273)
-.++.
T Consensus 210 n~~l~ 214 (232)
T TIGR03871 210 NAVLD 214 (232)
T ss_pred HHHHH
Confidence 88883
No 53
>PF12974 Phosphonate-bd: ABC transporter, phosphonate, periplasmic substrate-binding protein ; PDB: 3N5L_B 3QUJ_C 3P7I_A 3QK6_A 3S4U_A.
Probab=26.08 E-value=2.9e+02 Score=23.74 Aligned_cols=76 Identities=16% Similarity=0.174 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhcc-cc--cccc-hhHHHHhhcCcEEEEEeccccHHHHHhcCC--CcEEEecCCCceeeeeeEEEecCC
Q 024047 67 KISVQQNLALLANQ-AR--LFDS-THYLKAFGIGDVWVAVGWSSDVLPAVKRMS--NVAVVVPKSGASLWADLWAIPAAS 140 (273)
Q Consensus 67 ~~~~~~~L~~l~~~-v~--~~~~-~~~~~~~~~Gev~va~~~s~~~~~~~~~~~--~v~~~~P~eG~~~~~d~~~I~k~a 140 (273)
+....++|.+.... +. .+.+ .+..+++.+|+++++++-......+.++.. ++.-..+..|...+...+.+.+++
T Consensus 16 ~~~l~~~L~~~~g~~v~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~~~ivv~~ds 95 (243)
T PF12974_consen 16 WAPLADYLSKQLGVPVELVPADDYAEFIEALRSGEIDLAFMGPLPYVQARQRAGVEPLATPVGPDGSPSYRSVIVVRADS 95 (243)
T ss_dssp HHHHHHHHHHHHTSEEEEE--SSHHHHHHHHHTTS-SEEE--HHHHHHHHHHSSEEEEEEEEETTT-SCEEEEEEEETTS
T ss_pred HHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHcCCccEEEECcHHHHHHhhcCcEEEEEEecccCCCcceeEEEEEECCC
Confidence 45555666654322 22 2332 578899999999999887666666665432 222223345666666677888887
Q ss_pred CC
Q 024047 141 RL 142 (273)
Q Consensus 141 ~~ 142 (273)
+-
T Consensus 96 ~i 97 (243)
T PF12974_consen 96 PI 97 (243)
T ss_dssp S-
T ss_pred CC
Confidence 53
No 54
>PRK11553 alkanesulfonate transporter substrate-binding subunit; Provisional
Probab=23.56 E-value=1.6e+02 Score=26.46 Aligned_cols=69 Identities=14% Similarity=0.121 Sum_probs=40.5
Q ss_pred hhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEEecCCCceeeeeeEEEecC--CCCcccccCCCCCCChHHHHHHHHH
Q 024047 87 THYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAA--SRLETKQIGGRVRGPSPLIHQWIEF 164 (273)
Q Consensus 87 ~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~~P~eG~~~~~d~~~I~k~--a~~~~~~~~~~~~~~~~~A~~FInf 164 (273)
.+...+|.+|++++++.|......+..++ ...+....++.....+.+++... ..|++ ...+|+.-
T Consensus 166 ~~~~~al~~G~vDa~~~~ep~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~------------~v~~~l~a 232 (314)
T PRK11553 166 ADARAAFQQGNVDAWAIWDPYYSAALLQG-GVRVLKDGTDLNQTGSFYLAARPYAEKNGA------------FIQQVLAT 232 (314)
T ss_pred HHHHHHHHcCCCCEEEEcCcHHHHHHhcC-CcEEeecCcccCcCceEEEEcHHHHHHCHH------------HHHHHHHH
Confidence 46678999999999999876665555443 34444333322112223333322 34555 88888876
Q ss_pred HhcH
Q 024047 165 CLQT 168 (273)
Q Consensus 165 llsp 168 (273)
+...
T Consensus 233 ~~~A 236 (314)
T PRK11553 233 LTEA 236 (314)
T ss_pred HHHH
Confidence 6653
No 55
>smart00079 PBPe Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Prokaryotic homologues are represented by a separate alignment: PBPb
Probab=22.60 E-value=3.2e+02 Score=20.70 Aligned_cols=58 Identities=10% Similarity=0.031 Sum_probs=33.0
Q ss_pred ccccccc-hhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEEecCCCceeeeeeEEEecCC
Q 024047 80 QARLFDS-THYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAAS 140 (273)
Q Consensus 80 ~v~~~~~-~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~~P~eG~~~~~d~~~I~k~a 140 (273)
.+..|.+ .+...++.+|+ ++.+.....+....++..++..+ +. ....-..++++++++
T Consensus 47 ~~~~~~~~~~~~~~l~~g~-da~v~d~~~~~~~~~~~~~~~~~-~~-~~~~~~~~ia~~k~~ 105 (134)
T smart00079 47 PSVFVKSYAEGVQRVRVSN-YAFLMESTYLDYELSQNCDLMTV-GE-NFGRKGYGIAFPKGS 105 (134)
T ss_pred CCCCCCCHHHHHHHHHcCC-CEEEeehHhHHHHHhCCCCeEEc-Cc-ccCCCceEEEecCCC
Confidence 3445654 57889999999 87777655554444444443332 21 111112478888874
No 56
>TIGR03427 ABC_peri_uca ABC transporter periplasmic binding protein, urea carboxylase region. Members of this family are ABC transporter periplasmic binding proteins associated with the urea carboxylase/allophanate hydrolase pathway, an alternative to urease for urea degradation. The protein is restricted to bacteria with the pathway, with its gene close to the urea carboxylase and allophanate hydrolase genes. The substrate for this transporter therefore is likely to be urea or a compound from which urea is easily derived.
Probab=22.20 E-value=1.8e+02 Score=27.00 Aligned_cols=67 Identities=18% Similarity=0.135 Sum_probs=41.7
Q ss_pred hhHHHHhhcCcEEEEEeccccHHHHHhc-CCCcEEEecCCCce-eeeeeEEEecC--CCCcccccCCCCCCChHHHHHHH
Q 024047 87 THYLKAFGIGDVWVAVGWSSDVLPAVKR-MSNVAVVVPKSGAS-LWADLWAIPAA--SRLETKQIGGRVRGPSPLIHQWI 162 (273)
Q Consensus 87 ~~~~~~~~~Gev~va~~~s~~~~~~~~~-~~~v~~~~P~eG~~-~~~d~~~I~k~--a~~~~~~~~~~~~~~~~~A~~FI 162 (273)
.+...+|.+|+|+++..|......+..+ |.. .++-.++.+ ...+.+++... ..||+ ...+|+
T Consensus 143 ~d~~aAl~~G~VDAa~~~eP~~s~~~~~~g~~--~l~~~~~~~~~~~~~lv~~~~~l~~~pe------------~v~~~~ 208 (328)
T TIGR03427 143 ADIVAAFITKDVTAVVTWNPQLSEIKAQPGAN--EVFDSSQIPGEILDLMVVNTQTLKANPN------------LGKALT 208 (328)
T ss_pred HHHHHHHhcCCCcEEEEcCchHHHHHhCCCcE--EecccccCCCcceEEEEECHHHHHHCHH------------HHHHHH
Confidence 5678999999999999999887766654 332 222111111 12355555443 23555 888888
Q ss_pred HHHhc
Q 024047 163 EFCLQ 167 (273)
Q Consensus 163 nflls 167 (273)
.-+..
T Consensus 209 ~a~~k 213 (328)
T TIGR03427 209 GAWYE 213 (328)
T ss_pred HHHHH
Confidence 76654
No 57
>TIGR01728 SsuA_fam ABC transporter, substrate-binding protein, aliphatic sulfonates family. Members of this family are substrate-binding periplasmic proteins of ABC transporters. This subfamily includes SsuA, a member of a transporter operon needed to obtain sulfur from aliphatic sulfonates. Related proteins outside the scope of this model include taurine (NH2-CH2-CH2-S03H) binding proteins, the probable sulfate ester binding protein AtsR, and the probable aromatic sulfonate binding protein AsfC. All these families make sulfur available when Cys and sulfate levels are low. Please note that phylogenetic analysis by neighbor-joining suggests that a number of sequences belonging to this family have been excluded because of scoring lower than taurine-binding proteins.
Probab=21.98 E-value=1.8e+02 Score=25.07 Aligned_cols=68 Identities=12% Similarity=0.101 Sum_probs=39.4
Q ss_pred hhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEEecCCCce-ee-eeeEEEecC--CCCcccccCCCCCCChHHHHHHH
Q 024047 87 THYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGAS-LW-ADLWAIPAA--SRLETKQIGGRVRGPSPLIHQWI 162 (273)
Q Consensus 87 ~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~~P~eG~~-~~-~d~~~I~k~--a~~~~~~~~~~~~~~~~~A~~FI 162 (273)
.+...+|.+|++++++.|.........++. ...++...+.. .+ .+.+++.+. ..|++ ++.+|+
T Consensus 138 ~~~~~al~~g~vda~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~------------~~~~~~ 204 (288)
T TIGR01728 138 SDARAAFAAGQVDAWAIWEPWGSALVEEGG-ARVLANGEGIGLPGQPGFLVVRREFAEAHPE------------QVQRVL 204 (288)
T ss_pred HHHHHHHHCCCCCEEEeccchHhHHhhccC-CEEEEcCCccCCCCcceEEEECHHHHHHCHH------------HHHHHH
Confidence 467789999999999998876666554432 23332211111 11 234444433 23555 788888
Q ss_pred HHHhc
Q 024047 163 EFCLQ 167 (273)
Q Consensus 163 nflls 167 (273)
+=+..
T Consensus 205 ~a~~~ 209 (288)
T TIGR01728 205 KVLVK 209 (288)
T ss_pred HHHHH
Confidence 65544
No 58
>PF12849 PBP_like_2: PBP superfamily domain; InterPro: IPR024370 This entry represents members of the periplasmic binding domain superfamily []. It is often associated with a helix-turn-helix domain.; PDB: 1QUL_A 1OIB_A 1A54_A 1IXH_A 1A40_A 1QUJ_A 1A55_A 1IXI_A 2ABH_A 1QUK_A ....
Probab=21.76 E-value=75 Score=28.05 Aligned_cols=35 Identities=26% Similarity=0.539 Sum_probs=22.8
Q ss_pred CCc-eeeeeeEEEecCCCCcccccCCCCCCChHHHHHHHHHHhcHH
Q 024047 125 SGA-SLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTA 169 (273)
Q Consensus 125 eG~-~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInfllspe 169 (273)
.|. ++.-..+.+.+..+... .+.+.+|++|++|+|
T Consensus 246 ~g~YPl~r~~y~~~~~~~~~~----------~~~~~~Fl~~~lS~e 281 (281)
T PF12849_consen 246 SGSYPLSRPLYLYTNKDPLQP----------DPLVRAFLDFVLSEE 281 (281)
T ss_dssp TTSSSCEEEEEEEEESTTSSH----------HHHHHHHHHHHHSHH
T ss_pred CCCCCeEeEEEEEEECCCCCC----------cHHHHHHHHHHcCCC
Confidence 444 55555666666544210 138999999999986
No 59
>PF00123 Hormone_2: Peptide hormone; InterPro: IPR000532 A number of polypeptidic hormones, mainly expressed in the intestine or the pancreas, belong to a group of structurally related peptides [, ]. Once such hormone, glucagon is widely distributed and produced in the alpha-cells of pancreatic islets []. It affects glucose metabolism in the liver [] by inhibiting glycogen synthesis, stimulating glycogenolysis and enchancing gluconeogenesis. It also increases mobilisation of glucose, free fatty acids and ketone bodies, which are metabolites produced in excess in diabetes mellitus. Glucagon is produced, like other peptide hormones, as part of a larger precursor (preproglucagon), which is cleaved to produce glucagon, glucagon-like protein I and glucagon-like protein II []. The structure of glucagon itself is fully conserved in all known mammalian species []. Other members of the structurally similar group include glicentin precursor, secretin, gastric inhibitory protein, vasoactive intestinal peptide (VIP), prealbumin, peptide HI-27 and growth hormone releasing factor.; GO: 0005179 hormone activity, 0005576 extracellular region; PDB: 1T5Q_A 2OBU_A 2QKH_B 2L70_A 2L71_A 2B4N_A 1GCN_A 1D0R_A 3IOL_B 2RRI_A ....
Probab=21.74 E-value=63 Score=18.99 Aligned_cols=11 Identities=0% Similarity=0.419 Sum_probs=9.1
Q ss_pred HHHHHHHHHhc
Q 024047 157 LIHQWIEFCLQ 167 (273)
Q Consensus 157 ~A~~FInflls 167 (273)
.|++||++++.
T Consensus 18 aak~fl~~L~~ 28 (28)
T PF00123_consen 18 AAKKFLQWLMN 28 (28)
T ss_dssp HHHHHHHHHCH
T ss_pred HHHHHHHHHhC
Confidence 78999998863
No 60
>TIGR01098 3A0109s03R phosphate/phosphite/phosphonate ABC transporters, periplasmic binding protein. A subset of this model in which nearly all members exhibit genomic context with elements of phosphonate metabolism, particularly the C-P lyase system has been built (TIGR03431) as an equivalog. Nevertheless, there are members of this subfamily (TIGR01098) which show up sporadically on a phylogenetic tree that also show phosphonate context and are most likely competent to transport phosphonates.
Probab=20.75 E-value=2.5e+02 Score=24.08 Aligned_cols=65 Identities=22% Similarity=0.050 Sum_probs=0.0
Q ss_pred hhHHHHhhcCcEEEEEeccccHHHHHhcCC----CcEEEecCCCceeeeeeEEEecC-CCCcccccCCCCCCChHHHHHH
Q 024047 87 THYLKAFGIGDVWVAVGWSSDVLPAVKRMS----NVAVVVPKSGASLWADLWAIPAA-SRLETKQIGGRVRGPSPLIHQW 161 (273)
Q Consensus 87 ~~~~~~~~~Gev~va~~~s~~~~~~~~~~~----~v~~~~P~eG~~~~~d~~~I~k~-a~~~~~~~~~~~~~~~~~A~~F 161 (273)
.+..+++.+|++++++.+......+..+++ .+..+...+... ..++++.++ .+. .-..+
T Consensus 184 ~~~~~al~~G~~Da~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--------------l~~~i 247 (254)
T TIGR01098 184 DASALAVANGKVDAATNNSSAIGRLKKRGPSDMKKVRVIWKSPLIP--NDPIAVRKDLPPE--------------LKEKI 247 (254)
T ss_pred HHHHHHHHcCCCCeEEecHHHHHHHHHhCccchhheEEEEecCCCC--CCCEEEECCCCHH--------------HHHHH
Q ss_pred HHHHhc
Q 024047 162 IEFCLQ 167 (273)
Q Consensus 162 Inflls 167 (273)
-+.+++
T Consensus 248 ~~~l~~ 253 (254)
T TIGR01098 248 RDAFLT 253 (254)
T ss_pred HHHHhh
Done!