BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024048
(273 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8N5L8|RP25L_HUMAN Ribonuclease P protein subunit p25-like protein OS=Homo sapiens
GN=RPP25L PE=1 SV=1
Length = 163
Score = 87.8 bits (216), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 68/136 (50%), Gaps = 9/136 (6%)
Query: 1 MDRYQKV-------EKPKTETAISENELRITAQGRLRNYISYAISLLEEKGANEVVLKAT 53
M+ Y+K P + E+R+ ++RN + A+ LE A VV +
Sbjct: 1 MEHYRKAGSVELPAPSPMPQLPPDTLEMRVRDGSKIRNLLGLALGRLEGGSARHVVFSGS 60
Query: 54 GRAINKTVMIAELLKRRVVGLHQNTSTGSIDITDVWEPL--EEGLLPLETTRHVSAITIT 111
GRA K V AE++KRRV GLHQ T + D W P + GL PL RHV A+ +
Sbjct: 61 GRAAGKAVSCAEIVKRRVPGLHQLTKLRFLQTEDSWVPASPDTGLDPLTVRRHVPAVWVL 120
Query: 112 LSRKELDSSSLGYQPP 127
LSR LD + GYQPP
Sbjct: 121 LSRDPLDPNECGYQPP 136
>sp|Q99JH1|RP25L_MOUSE Ribonuclease P protein subunit p25-like protein OS=Mus musculus
GN=Rpp25l PE=2 SV=1
Length = 163
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/110 (42%), Positives = 60/110 (54%), Gaps = 2/110 (1%)
Query: 20 ELRITAQGRLRNYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRRVVGLHQNTS 79
E+R+ ++RN + A+ LE VV +GRA K V AE++KRRV GLHQ T
Sbjct: 27 EMRVRDGSKIRNLLGLALGRLEGGSTRHVVFSGSGRAAGKAVSCAEIVKRRVPGLHQLTK 86
Query: 80 TGSIDITDVWEPL--EEGLLPLETTRHVSAITITLSRKELDSSSLGYQPP 127
+ D W P + GL PL RHV A+ + LSR LD S GYQPP
Sbjct: 87 LRFLQTEDSWVPTSPDTGLDPLTVRRHVPAVWVLLSRDPLDPSECGYQPP 136
>sp|Q2KIR4|RP25L_BOVIN Ribonuclease P protein subunit p25-like protein OS=Bos taurus
GN=RPP25L PE=2 SV=1
Length = 163
Score = 84.0 bits (206), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 70/141 (49%), Gaps = 10/141 (7%)
Query: 1 MDRYQKV-------EKPKTETAISENELRITAQGRLRNYISYAISLLEEKGANEVVLKAT 53
M+ Y+K P + E+R+ A ++RN + A+ LE A VV +
Sbjct: 1 MEHYRKAGSVELPAPSPMPQLPPDTLEMRVRAGSKIRNLLGLALERLEGGSARHVVFSGS 60
Query: 54 GRAINKTVMIAELLKRRVVGLHQNTSTGSIDITDVWEPL--EEGLLPLETTRHVSAITIT 111
GRA K V AE++KRRV GL+Q T + D W P + GL PL HV A+ +
Sbjct: 61 GRAAGKAVSCAEIVKRRVPGLYQLTKLRFLQTEDSWVPTSPDTGLDPLTVRSHVPAVWVL 120
Query: 112 LSRKELDSSSLGYQPP-VPTD 131
LSR LD + GYQPP P D
Sbjct: 121 LSRDPLDPNEYGYQPPGAPPD 141
>sp|Q9BUL9|RPP25_HUMAN Ribonuclease P protein subunit p25 OS=Homo sapiens GN=RPP25 PE=1
SV=1
Length = 199
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 61/119 (51%), Gaps = 10/119 (8%)
Query: 21 LRITAQGRLRNYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRRVVGLHQNTST 80
+R+ ++RN +++A + + + +V GRA KTV AE+LKRR+ GLHQ T
Sbjct: 38 MRVKEGSKIRNLMAFATASMAQPATRAIVFSGCGRATTKTVTCAEILKRRLAGLHQVTRL 97
Query: 81 GSIDITDVWEPLE----EGLLP------LETTRHVSAITITLSRKELDSSSLGYQPPVP 129
+ +VW+ L +G P L ++V + I LS+ LD GYQPP P
Sbjct: 98 RYRSVREVWQSLPPGPTQGQTPGEPAASLSVLKNVPGLAILLSKDALDPRQPGYQPPNP 156
>sp|Q5PPN2|RPP25_RAT Ribonuclease P protein subunit p25 OS=Rattus norvegicus GN=Rpp25
PE=2 SV=1
Length = 199
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 60/117 (51%), Gaps = 10/117 (8%)
Query: 21 LRITAQGRLRNYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRRVVGLHQNTST 80
+R+ ++RN +++A + + + +V GRA KTV AE+LKRR+ GLHQ T
Sbjct: 38 MRVKEGSKIRNLLAFATASMAQPATRAIVFSGCGRATTKTVTCAEILKRRLAGLHQVTRL 97
Query: 81 GSIDITDVWEPL----------EEGLLPLETTRHVSAITITLSRKELDSSSLGYQPP 127
+ +VW+ L + L ++V ++ I LS+ LD LGYQPP
Sbjct: 98 RYRSVREVWQSLPPGPTPGQTPSDPAASLSVLKNVPSLAILLSKDALDPRQLGYQPP 154
>sp|Q91WE3|RPP25_MOUSE Ribonuclease P protein subunit p25 OS=Mus musculus GN=Rpp25 PE=2
SV=1
Length = 199
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 60/117 (51%), Gaps = 10/117 (8%)
Query: 21 LRITAQGRLRNYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRRVVGLHQNTST 80
+R+ ++RN +++A + + + +V GRA KTV AE+LKRR+ GLHQ T
Sbjct: 38 MRVKEGSKIRNLLAFATASMAQPATRAIVFSGCGRATTKTVTCAEILKRRLAGLHQVTRL 97
Query: 81 GSIDITDVWEPL----------EEGLLPLETTRHVSAITITLSRKELDSSSLGYQPP 127
+ +VW+ L + L ++V ++ I LS+ LD LGYQPP
Sbjct: 98 RYRSVREVWQSLPPGPTPGQTPSDPAASLSVLKNVPSLAILLSKDALDPRQLGYQPP 154
>sp|P60851|ALBA_NANEQ DNA/RNA-binding protein Alba OS=Nanoarchaeum equitans (strain
Kin4-M) GN=albA PE=3 SV=1
Length = 90
Score = 46.2 bits (108), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 9/88 (10%)
Query: 29 LRNYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRRVVGLHQNTSTGSIDITDV 88
L NY+ A+ + +GANEVV+KA GR I++ V +AE +++R + G +D+ D+
Sbjct: 11 LTNYV-MAVVMQFMQGANEVVIKARGRNISRAVDVAERVRKRFLA-------GQVDVGDI 62
Query: 89 WEPLEEGLLPLE-TTRHVSAITITLSRK 115
EE + P R VS I I L +K
Sbjct: 63 KIDSEEVVDPATGQKRTVSTIEIKLVKK 90
>sp|Q2NHL8|ALBA_METST DNA/RNA-binding protein Alba OS=Methanosphaera stadtmanae (strain
DSM 3091) GN=albA PE=3 SV=1
Length = 90
Score = 44.3 bits (103), Expect = 9e-04, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 9/84 (10%)
Query: 31 NYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRRVVGLHQNTSTGSIDITDVWE 90
NY+ ++ + G EV+LKA GRAI++ V +AE+++ R + + SIDI+
Sbjct: 16 NYVLAVVTQMNS-GVTEVILKARGRAISRAVDVAEIVRNRFI---SDVDVKSIDIST--- 68
Query: 91 PLEEGLLPLETTRHVSAITITLSR 114
EE + T+ +VSAI I LS+
Sbjct: 69 --EEIVGNEGTSSNVSAIEIRLSK 90
>sp|O29195|ALBA1_ARCFU DNA/RNA-binding protein Alba 1 OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=albA1 PE=3 SV=1
Length = 89
Score = 42.4 bits (98), Expect = 0.004, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 51/85 (60%), Gaps = 11/85 (12%)
Query: 33 ISYAISLLEE--KGANEVVLKATGRAINKTVMIAELLKRRVVGLHQNTSTGSIDITDVWE 90
++Y +++L + GA EV +KA GRAI++ V +AE++++R + +D+ D+
Sbjct: 14 MNYVLAVLTQFNSGATEVSIKARGRAISRAVDVAEIVRKRFL--------PDVDVKDIKI 65
Query: 91 PLEEGLLPLETTRHVSAITITLSRK 115
E+ + + T +VSAI I L++K
Sbjct: 66 STEQ-IDSEQGTANVSAIEIILAKK 89
>sp|Q9YAX2|ALBA2_AERPE DNA/RNA-binding protein Alba 2 OS=Aeropyrum pernix (strain ATCC
700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=albA2 PE=1 SV=1
Length = 102
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 16/90 (17%)
Query: 31 NYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRRVVGLHQNTSTGSIDITDVWE 90
NY+ ++ L E+G N+VV+KA GR IN+ V E++++R +I+I D+
Sbjct: 18 NYVLAILTTLMEQGTNQVVVKARGRNINRAVDAVEIVRKRF--------AKNIEIKDIKI 69
Query: 91 PLEEGLLPLET------TRHVSAITITLSR 114
+E + ++T TR VS+I I L +
Sbjct: 70 DSQE--IEVQTPEGQTRTRRVSSIEICLEK 97
>sp|O28323|ALBA2_ARCFU DNA/RNA-binding protein Alba 2 OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=albA2 PE=1 SV=1
Length = 89
Score = 40.0 bits (92), Expect = 0.020, Method: Composition-based stats.
Identities = 19/40 (47%), Positives = 30/40 (75%), Gaps = 1/40 (2%)
Query: 31 NYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRR 70
NY+ ++ L E GA+EVV+KA GRAI++ V +AE+++ R
Sbjct: 15 NYVLATLTQLNE-GADEVVIKARGRAISRAVDVAEIVRNR 53
>sp|Q9YAW1|ALBA1_AERPE DNA/RNA-binding protein Alba 1 OS=Aeropyrum pernix (strain ATCC
700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=albA1 PE=3 SV=2
Length = 94
Score = 38.5 bits (88), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 10/84 (11%)
Query: 31 NYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRRVVGLHQNTSTGSIDITDVWE 90
NY+ A+ LL E+GA EVV+KA GR I V E+LK + +N ++I E
Sbjct: 20 NYVMAALKLLNEEGAPEVVIKARGRNICNAVDTVEMLKNLFI---KNLVIKKVNIYS--E 74
Query: 91 PLEEGLLPLETTRHVSAITITLSR 114
L+ E + VSAI I +++
Sbjct: 75 SLDS-----EGKKKVSAIEIVVAK 93
>sp|A4IGH2|RSAD1_DANRE Radical S-adenosyl methionine domain-containing protein 1,
mitochondrial OS=Danio rerio GN=rsad1 PE=2 SV=1
Length = 444
Score = 38.1 bits (87), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 56/133 (42%), Gaps = 29/133 (21%)
Query: 86 TDVWEPLEEGLLPLETTRHVSAITITLSR-----KELDSSSLGYQPPVPTDQVKPLADYD 140
W+ E LL + H+S +TL R K+++S L VP D+V +
Sbjct: 209 VSCWQKQLEELLYV-CDDHISLYQLTLERGTQLFKQVESGKLS----VPGDEVTAIMYKT 263
Query: 141 DGRALHGMRDKGRRQ--ARNGGNNNGVPEYNNGHWDG----GAGYGGRGRGRAAGRSFWG 194
R L + G Q N NN V E+N G+W G G G G GR F
Sbjct: 264 ACRVL---EESGFHQYEVSNFARNNAVSEHNMGYWRGHQYIGVGPGAHGR-------FVP 313
Query: 195 HGRRYDGNMQQES 207
HG DG +Q+E+
Sbjct: 314 HG---DGGVQREA 323
>sp|Q9V1N3|ALBA_PYRAB DNA/RNA-binding protein Alba OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=albA PE=3 SV=1
Length = 93
Score = 37.7 bits (86), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 8/85 (9%)
Query: 31 NYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRRVVGLHQNTSTGSIDITDVWE 90
NY+ I+ E GA EV +KA GRAI++ V +AE+++ R L + I I
Sbjct: 16 NYVLAVITQFHE-GAKEVSIKARGRAISRAVDVAEIVRNRF--LKDDVDVKEIKIGTEEL 72
Query: 91 PLEEGLLPLETTRHVSAITITLSRK 115
P +G T + S I I L+RK
Sbjct: 73 PTADG-----RTTNTSTIEIVLARK 92
>sp|O74101|ALBA_PYRHO DNA/RNA-binding protein Alba OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=albA PE=1 SV=1
Length = 93
Score = 37.4 bits (85), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 8/85 (9%)
Query: 31 NYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRRVVGLHQNTSTGSIDITDVWE 90
NY+ I+ E GA EV +KA GRAI++ V +AE+++ R L + I I
Sbjct: 16 NYVLAVITQFHE-GAKEVSIKARGRAISRAVDVAEIVRNRF--LKDDVDVKEIKIGTEEL 72
Query: 91 PLEEGLLPLETTRHVSAITITLSRK 115
P +G T + S I I L+RK
Sbjct: 73 PTADG-----RTTNTSTIEIVLARK 92
>sp|Q8TZV1|ALBA_PYRFU DNA/RNA-binding protein Alba OS=Pyrococcus furiosus (strain ATCC
43587 / DSM 3638 / JCM 8422 / Vc1) GN=albA PE=3 SV=1
Length = 93
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 12/87 (13%)
Query: 31 NYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRRVVGLHQNTSTGSIDITDVWE 90
NY+ I+ E GA EV +KA GRAI++ V +AE+++ R + ++DI ++
Sbjct: 16 NYVLAVITQFNE-GAKEVSIKARGRAISRAVDVAEIVRNRFLK-------DTVDIKEIKI 67
Query: 91 PLEEGLLPLET--TRHVSAITITLSRK 115
EE LP T + S I I L RK
Sbjct: 68 GTEE--LPTADGRTTNTSTIEIVLERK 92
>sp|Q57665|ALBA_METJA DNA/RNA-binding protein Alba OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 /
NBRC 100440) GN=albA PE=1 SV=1
Length = 87
Score = 37.4 bits (85), Expect = 0.12, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 30/39 (76%), Gaps = 1/39 (2%)
Query: 33 ISYAISLLEEKGAN-EVVLKATGRAINKTVMIAELLKRR 70
++Y +++L + +N EV++KA G+AINK V +AE+++ R
Sbjct: 13 MNYVVAVLTQLTSNDEVIIKARGKAINKAVDVAEMIRNR 51
>sp|P60849|ALBA1_SULSO DNA/RNA-binding protein Alba 1 OS=Sulfolobus solfataricus (strain
ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=albA1 PE=1
SV=2
Length = 97
Score = 36.6 bits (83), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Query: 31 NYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRR 70
NY+ A++LL + G +E+V+KA GRAI+K V E+++ R
Sbjct: 21 NYVLAALTLLNQ-GVSEIVIKARGRAISKAVDTVEIVRNR 59
>sp|P60848|ALBA1_SULSH DNA/RNA-binding protein Alba 1 OS=Sulfolobus shibatae GN=albA1
PE=1 SV=2
Length = 97
Score = 36.6 bits (83), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Query: 31 NYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRR 70
NY+ A++LL + G +E+V+KA GRAI+K V E+++ R
Sbjct: 21 NYVLAALTLLNQ-GVSEIVIKARGRAISKAVDTVEIVRNR 59
>sp|Q971T8|ALBA1_SULTO DNA/RNA-binding protein Alba 1 OS=Sulfolobus tokodaii (strain DSM
16993 / JCM 10545 / NBRC 100140 / 7) GN=albA1 PE=3 SV=1
Length = 99
Score = 36.2 bits (82), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Query: 31 NYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRR 70
NY+ A++LL + G +E+++KA GRAI+K V E+++ R
Sbjct: 22 NYVLAALTLLNQ-GVSEIIIKARGRAISKAVDTVEIVRNR 60
>sp|Q8TXF9|ALBA1_METKA DNA/RNA-binding protein Alba 1 OS=Methanopyrus kandleri (strain
AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=albA1 PE=3
SV=1
Length = 93
Score = 35.4 bits (80), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 29 LRNYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRR 70
+ NY+ I+ E GANEV +KA GRAI++ V +AE+++ R
Sbjct: 15 VMNYVLACITQFNE-GANEVRIKARGRAISRAVDVAEIVRNR 55
>sp|A4YHK0|ALBA_METS5 DNA/RNA-binding protein Alba OS=Metallosphaera sedula (strain
ATCC 51363 / DSM 5348) GN=albA PE=3 SV=1
Length = 98
Score = 35.4 bits (80), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 31 NYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRR 70
NY+ A++LL + G E+++KA GRAI+K V E+++ R
Sbjct: 21 NYVLAALTLLNQ-GVPEIIIKARGRAISKAVDTVEIVRNR 59
>sp|Q4J973|ALBA_SULAC DNA/RNA-binding protein Alba OS=Sulfolobus acidocaldarius (strain
ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB
11770) GN=albA PE=3 SV=1
Length = 97
Score = 35.0 bits (79), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 31 NYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRR 70
NY+ A++LL + G +E+ +KA GRAI+K V E+++ R
Sbjct: 20 NYVLAALTLLNQ-GVSEITIKARGRAISKAVDTVEIVRNR 58
>sp|Q0W252|ALBA_UNCMA DNA/RNA-binding protein Alba OS=Uncultured methanogenic archaeon
RC-I GN=albA PE=3 SV=1
Length = 96
Score = 34.7 bits (78), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 31 NYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRR 70
NY+ A++ E GA EV +KA GRAI++ V AE+++ R
Sbjct: 16 NYVLAAVTQFNE-GAKEVTIKARGRAISRAVDTAEVVRHR 54
>sp|B6YWF5|ALBA_THEON DNA/RNA-binding protein Alba OS=Thermococcus onnurineus (strain
NA1) GN=albA PE=3 SV=1
Length = 91
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 31 NYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRR 70
NY+ I+ E GA EV +KA GRAI++ V +AE+++ R
Sbjct: 16 NYVLAVITQFNE-GAKEVSVKARGRAISRAVDVAEIVRNR 54
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.139 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 113,115,443
Number of Sequences: 539616
Number of extensions: 5372085
Number of successful extensions: 19869
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 290
Number of HSP's that attempted gapping in prelim test: 16281
Number of HSP's gapped (non-prelim): 2531
length of query: 273
length of database: 191,569,459
effective HSP length: 116
effective length of query: 157
effective length of database: 128,974,003
effective search space: 20248918471
effective search space used: 20248918471
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)