Query 024048
Match_columns 273
No_of_seqs 180 out of 381
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 17:17:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024048.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024048hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2h9u_A DNA/RNA-binding protein 99.9 2.6E-25 8.8E-30 178.5 13.1 92 18-117 6-100 (102)
2 1nfj_A ALBA, conserved hypothe 99.9 1.6E-24 5.6E-29 169.8 12.0 86 17-114 2-89 (89)
3 2bky_A DNA/RNA-binding protein 99.9 2.8E-24 9.4E-29 171.0 13.4 90 14-115 5-97 (97)
4 1nh9_A MJA10B, DNA-binding pro 99.9 3.3E-24 1.1E-28 167.4 11.8 84 18-114 2-87 (87)
5 3toe_A MTH10B, DNA/RNA-binding 99.9 8.4E-22 2.9E-26 155.3 12.3 89 17-115 3-91 (91)
6 2bky_X DNA/RNA-binding protein 99.8 1.4E-20 4.9E-25 147.6 10.3 85 16-115 4-88 (89)
7 1vm0_A Unknown protein; struct 99.7 1.4E-17 4.6E-22 138.8 10.9 91 15-116 17-108 (130)
8 3iab_B Ribonucleases P/MRP pro 99.7 3E-16 1E-20 132.0 14.0 108 5-113 13-139 (140)
9 3iab_A Ribonucleases P/MRP pro 98.1 2.6E-05 8.8E-10 66.7 11.7 90 21-116 47-146 (158)
10 1b34_A Protein (small nuclear 88.9 0.077 2.6E-06 42.7 0.0 8 103-110 53-60 (119)
11 2ek0_A Stage V sporulation pro 80.6 18 0.00062 28.1 11.4 51 19-71 2-53 (90)
12 2k9u_B Filamin-binding LIM pro 36.1 21 0.0007 21.8 1.9 18 101-118 6-23 (26)
13 3pam_A Transmembrane protein; 23.3 1.4E+02 0.0049 24.8 5.8 51 31-84 100-164 (259)
14 1lxn_A Hypothetical protein MT 20.2 61 0.0021 24.8 2.6 49 26-75 15-65 (99)
No 1
>2h9u_A DNA/RNA-binding protein ALBA 2; archaea, DNA binding protein, structural G NPPSFA, national project on protein structural and function analyses; 2.00A {Aeropyrum pernix} PDB: 3u6y_A*
Probab=99.93 E-value=2.6e-25 Score=178.46 Aligned_cols=92 Identities=34% Similarity=0.492 Sum_probs=84.8
Q ss_pred CCEEEEcCCCchHHHHHHHH-HHHhhcCCCEEEEEEcchhHHHHHHHHHHHHHHh-CCce-eeeEEEEEEeeeeeeeccC
Q 024048 18 ENELRITAQGRLRNYISYAI-SLLEEKGANEVVLKATGRAINKTVMIAELLKRRV-VGLH-QNTSTGSIDITDVWEPLEE 94 (273)
Q Consensus 18 ~NeIrVt~k~~irnYV~yA~-~LL~e~g~~eVvIkA~GkAIsKAV~VAEILKrRi-~GLh-Q~t~Issv~I~De~EP~eE 94 (273)
+|+|+|++|+. .|||.+|+ .+|+ ++.++|+|||+|+||+|||+||||||+|+ ++|| |.++|++.++.|++| +
T Consensus 6 ~n~I~V~~k~~-~nyV~~a~~~ll~-~g~~eV~ikA~G~AIskAV~vaEilk~r~~~gl~~q~i~i~s~~i~d~~e---~ 80 (102)
T 2h9u_A 6 APEVRIGRKPV-MNYVLAILTTLME-QGTNQVVVKARGRNINRAVDAVEIVRKRFAKNIEIKDIKIDSQEIEVQTP---E 80 (102)
T ss_dssp CCEEECCSSCH-HHHHHHHHHHHTS-TTCCEEEEEEETTHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEEEEEECT---T
T ss_pred CCEEEEcCCCH-HHHHHHHHHHHHh-CCCCEEEEEEechhhhHHHHHHHHHHHhccCCceEEEEEEeeEEEecccc---C
Confidence 69999999988 59999999 9998 58999999999999999999999999999 8999 999999999999855 5
Q ss_pred CCccceeeeeeeeEEEEEecccC
Q 024048 95 GLLPLETTRHVSAITITLSRKEL 117 (273)
Q Consensus 95 GL~~l~~tR~VS~I~ItLSk~~L 117 (273)
|++ ++|+||+|+|+|+++|.
T Consensus 81 g~~---~~r~vS~IeI~Lsk~~~ 100 (102)
T 2h9u_A 81 GQT---RTRRVSSIEICLEKAGE 100 (102)
T ss_dssp SCE---EEEEEEEEEEEEEECSS
T ss_pred Ccc---ceeEeeeEEEEEEccCC
Confidence 633 79999999999999875
No 2
>1nfj_A ALBA, conserved hypothetical protein AF1956; SIR2, HDAC, gene regulation, transcription; 2.00A {Archaeoglobus fulgidus} SCOP: d.68.6.1 PDB: 1nfh_A 2z7c_A*
Probab=99.92 E-value=1.6e-24 Score=169.80 Aligned_cols=86 Identities=31% Similarity=0.570 Sum_probs=78.8
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHhhcCCCEEEEEEcchhHHHHHHHHHHHHHHh-CCce-eeeEEEEEEeeeeeeeccC
Q 024048 17 SENELRITAQGRLRNYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRRV-VGLH-QNTSTGSIDITDVWEPLEE 94 (273)
Q Consensus 17 ~~NeIrVt~k~~irnYV~yA~~LL~e~g~~eVvIkA~GkAIsKAV~VAEILKrRi-~GLh-Q~t~Issv~I~De~EP~eE 94 (273)
++|+|+|++|+ +.+||.+|+.+|+ ++.++|+|||+|+||+|||+||||||+|+ +||| |.++|+|.++.| +|
T Consensus 2 ~~n~I~V~~k~-v~~yV~~~~~~l~-~g~~eV~ika~G~AIskAV~vaeilk~r~~~gl~i~~i~i~s~~i~~-----e~ 74 (89)
T 1nfj_A 2 AEHVVYVGNKP-VMNYVLATLTQLN-EGADEVVIKARGRAISRAVDVAEIVRNRFMPGVKVKEIKIDTEELES-----EQ 74 (89)
T ss_dssp -CEEEECCSSC-HHHHHHHHHHHHH-TTCSEEEEEEETTHHHHHHHHHHHHHHHTCTTCEEEEEEEEEEECCC-----BT
T ss_pred CCCEEEEcCCC-HHHHHHHHHHHHh-CCCCEEEEEEecHHHHHHHHHHHHHHHhccCCcEEEEEEEeEEEEEc-----CC
Confidence 57999999998 7799999999998 58999999999999999999999999999 8999 999999888866 36
Q ss_pred CCccceeeeeeeeEEEEEec
Q 024048 95 GLLPLETTRHVSAITITLSR 114 (273)
Q Consensus 95 GL~~l~~tR~VS~I~ItLSk 114 (273)
| .+|+||+|+|+|+|
T Consensus 75 g-----~~r~vs~IeI~L~k 89 (89)
T 1nfj_A 75 G-----RRSNVSTIEIVLAK 89 (89)
T ss_dssp T-----BCCEEEEEEEEEEC
T ss_pred C-----cEEEeeEEEEEEEC
Confidence 6 78999999999986
No 3
>2bky_A DNA/RNA-binding protein ALBA 1; archaeal DNA binding protein, DNA condensation, DNA-binding, DNA binding protein; 1.70A {Sulfolobus solfataricus} SCOP: d.68.6.1 PDB: 1h0x_A* 1h0y_A* 1y9x_A
Probab=99.91 E-value=2.8e-24 Score=171.03 Aligned_cols=90 Identities=33% Similarity=0.527 Sum_probs=80.0
Q ss_pred CCCCCCEEEEcCCCchHHHHHHHHHHHhhcCCCEEEEEEcchhHHHHHHHHHHHHHHhCC--c-eeeeEEEEEEeeeeee
Q 024048 14 TAISENELRITAQGRLRNYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRRVVG--L-HQNTSTGSIDITDVWE 90 (273)
Q Consensus 14 ~p~~~NeIrVt~k~~irnYV~yA~~LL~e~g~~eVvIkA~GkAIsKAV~VAEILKrRi~G--L-hQ~t~Issv~I~De~E 90 (273)
.+.++|+|+|++++ +.+||.+|+.||+ ++.++|+|||+|+||+|||+||||||+|+.+ | ||.++|++.++.|+
T Consensus 5 ~~~~~n~I~V~~k~-v~~YV~~a~~ll~-~g~~eV~ikA~G~AIskAV~vaeilk~r~~~~~l~~~~i~i~s~~i~~e-- 80 (97)
T 2bky_A 5 TPTPSNVVLIGKKP-VMNYVLAALTLLN-QGVSEIVIKARGRAISKAVDTVEIVRNRFLPDKIEIKEIRVGSQVVTSQ-- 80 (97)
T ss_dssp ----CCEEECCSSC-HHHHHHHHHHHHH-TTCCEEEEEEETTHHHHHHHHHHHHHHHTSTTTEEEEEEEEEEEEEEET--
T ss_pred cCCCCCEEEEcCcC-HHHHHHHHHHHHh-CCCCEEEEEEechHHHHHHHHHHHHHHhccCCceEEEEEEeeeEEEecC--
Confidence 36678999999998 8899999999999 5899999999999999999999999999954 8 89999999999874
Q ss_pred eccCCCccceeeeeeeeEEEEEecc
Q 024048 91 PLEEGLLPLETTRHVSAITITLSRK 115 (273)
Q Consensus 91 P~eEGL~~l~~tR~VS~I~ItLSk~ 115 (273)
|| .+|+||+|+|+|+++
T Consensus 81 ---~G-----~~r~vS~IeI~L~k~ 97 (97)
T 2bky_A 81 ---DG-----RQSRVSTIEIAIRKK 97 (97)
T ss_dssp ---TS-----CEEEEEEEEEEEEEC
T ss_pred ---CC-----cEEEeeEEEEEEEcC
Confidence 66 799999999999974
No 4
>1nh9_A MJA10B, DNA-binding protein ALBA; 2.00A {Methanocaldococcus jannaschii} SCOP: d.68.6.1
Probab=99.91 E-value=3.3e-24 Score=167.42 Aligned_cols=84 Identities=30% Similarity=0.534 Sum_probs=73.5
Q ss_pred CCEEEEcCCCchHHHHHHHHHHHhhcCCCEEEEEEcchhHHHHHHHHHHHHHHh-CCce-eeeEEEEEEeeeeeeeccCC
Q 024048 18 ENELRITAQGRLRNYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRRV-VGLH-QNTSTGSIDITDVWEPLEEG 95 (273)
Q Consensus 18 ~NeIrVt~k~~irnYV~yA~~LL~e~g~~eVvIkA~GkAIsKAV~VAEILKrRi-~GLh-Q~t~Issv~I~De~EP~eEG 95 (273)
+|+|+|++| ++.+||.+|+.+|++ + ++|+|||+|+||+|||+||||||+|+ ++|| |.++|++.++.|+ ||
T Consensus 2 ~n~I~V~~k-~v~~YV~~~~~~l~~-g-~eV~ikA~G~AIskAV~vaeilk~r~~~~l~v~~i~i~s~~i~~e-----~g 73 (87)
T 1nh9_A 2 DNVVLIGKK-PVMNYVVAVLTQLTS-N-DEVIIKARGKAINKAVDVAEMIRNRFIKDIKIKKIEIGTDKVKNP-----DG 73 (87)
T ss_dssp CSEEEECSS-CHHHHHHHHHHHHHH-C-SEEEEEEEGGGHHHHHHHHHHHHHHTCTTCEEEEEEEEEEC-----------
T ss_pred CCEEEEeCc-chHHHHHHHHHHhcC-C-CEEEEEEechHHHHHHHHHHHHHHhccCCeEEEEEEEeEEEEEcC-----CC
Confidence 699999999 899999999999995 6 99999999999999999999999999 8899 9999999988874 56
Q ss_pred CccceeeeeeeeEEEEEec
Q 024048 96 LLPLETTRHVSAITITLSR 114 (273)
Q Consensus 96 L~~l~~tR~VS~I~ItLSk 114 (273)
.+|+||+|+|+|++
T Consensus 74 -----~~r~vS~IeI~L~k 87 (87)
T 1nh9_A 74 -----REVNVSTIEIVLAK 87 (87)
T ss_dssp ------CCCEEEEEEEEEC
T ss_pred -----cEEEeeEEEEEEEC
Confidence 78999999999986
No 5
>3toe_A MTH10B, DNA/RNA-binding protein ALBA; SAC10B family, alpha/beta mixed, homodimer, unknown function; 2.20A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.87 E-value=8.4e-22 Score=155.32 Aligned_cols=89 Identities=34% Similarity=0.475 Sum_probs=80.1
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHhhcCCCEEEEEEcchhHHHHHHHHHHHHHHhCCceeeeEEEEEEeeeeeeeccCCC
Q 024048 17 SENELRITAQGRLRNYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRRVVGLHQNTSTGSIDITDVWEPLEEGL 96 (273)
Q Consensus 17 ~~NeIrVt~k~~irnYV~yA~~LL~e~g~~eVvIkA~GkAIsKAV~VAEILKrRi~GLhQ~t~Issv~I~De~EP~eEGL 96 (273)
++|.|+|++| ++.+||.+|+.+|+ ++.++|+|||+|+||+|||++||+||+|+.. .++++++++.++|.+.++|
T Consensus 3 ~~~vv~vg~K-pv~~YV~~~i~~~n-~g~~eV~ikA~G~aIskAVdvaei~k~R~~~---~v~v~~I~I~se~~~~e~G- 76 (91)
T 3toe_A 3 EENVVYIGNK-PVMNYVLAVVTQMN-GGTSEVILKARGIAISRAVDVAEIVRNRFIP---DIQIENIDICTEEIIGNEG- 76 (91)
T ss_dssp --CCEECCSS-CHHHHHHHHHHHHH-TTCCEEEEEEETTHHHHHHHHHHHHHHHTCT---TCEEEEEEEEEEEEECTTS-
T ss_pred ccCEEEECCC-cHHHHHHHHHHHHh-CCCCEEEEEEehhHHHHHHHHHHHHHHhccC---CcEEEEEEeeeEEeecCCC-
Confidence 4789999988 56699999999998 5899999999999999999999999999843 4689999999999999999
Q ss_pred ccceeeeeeeeEEEEEecc
Q 024048 97 LPLETTRHVSAITITLSRK 115 (273)
Q Consensus 97 ~~l~~tR~VS~I~ItLSk~ 115 (273)
.+|+||+|+|+|+++
T Consensus 77 ----~~r~VS~IeI~L~k~ 91 (91)
T 3toe_A 77 ----TATNVSAIEIQLRKD 91 (91)
T ss_dssp ----SEEEEEEEEEEEEC-
T ss_pred ----ceeEeeEEEEEEECC
Confidence 899999999999984
No 6
>2bky_X DNA/RNA-binding protein ALBA 2; archaeal DNA binding protein, DNA condensation, DNA-binding, DNA binding protein; 1.70A {Sulfolobus solfataricus} SCOP: d.68.6.1 PDB: 2a2y_A 1udv_A
Probab=99.83 E-value=1.4e-20 Score=147.65 Aligned_cols=85 Identities=26% Similarity=0.307 Sum_probs=71.1
Q ss_pred CCCCEEEEcCCCchHHHHHHHHHHHhhcCCCEEEEEEcchhHHHHHHHHHHHHHHhCCceeeeEEEEEEeeeeeeeccCC
Q 024048 16 ISENELRITAQGRLRNYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRRVVGLHQNTSTGSIDITDVWEPLEEG 95 (273)
Q Consensus 16 ~~~NeIrVt~k~~irnYV~yA~~LL~e~g~~eVvIkA~GkAIsKAV~VAEILKrRi~GLhQ~t~Issv~I~De~EP~eEG 95 (273)
.++|+|+|+++ ++.|||.+|+.+|+ ++.++|+|||+|+||+|||+|||+||+|+.+.|| +.++++..+ +
T Consensus 4 ~~~~iv~vg~k-pv~nYV~~~~~~ln-~g~~eV~ikA~G~aIskAVdvaeilk~R~~~~~~---i~~i~i~se-----~- 72 (89)
T 2bky_X 4 KLNEIVVRKTK-NVEDHVLDVIVLFN-QGIDEVILKGTGREISKAVDVYNSLKDRLGDGVQ---LVNVQTGSE-----V- 72 (89)
T ss_dssp CCEEEECCTTS-CHHHHHHHHHHHHH-TTCCEEEEEEETTHHHHHHHHHHHHHHHHGGGEE---EEEEEEEEE-----E-
T ss_pred CCCCEEEECCC-CHHHHHHHHHHHHh-CCCCEEEEEEechHHHHHHHHHHHHHHhccCceE---EEEEEeccc-----c-
Confidence 35677788776 78899999999999 5899999999999999999999999999987765 444444433 2
Q ss_pred CccceeeeeeeeEEEEEecc
Q 024048 96 LLPLETTRHVSAITITLSRK 115 (273)
Q Consensus 96 L~~l~~tR~VS~I~ItLSk~ 115 (273)
.++|+||+|+|+|+++
T Consensus 73 ----~~~r~VS~IeI~L~k~ 88 (89)
T 2bky_X 73 ----RDRRRISYILLRLKRV 88 (89)
T ss_dssp ----ETTEEEEEEEEEEEEC
T ss_pred ----CcceEeeeEEEEEEec
Confidence 3789999999999974
No 7
>1vm0_A Unknown protein; structural genomics, protein structure initiative, CESG, AT2 unknown function, nitrate; 1.80A {Arabidopsis thaliana} SCOP: d.68.6.2 PDB: 2q3v_A
Probab=99.73 E-value=1.4e-17 Score=138.78 Aligned_cols=91 Identities=26% Similarity=0.365 Sum_probs=71.2
Q ss_pred CCCCCEEEEcC-CCchHHHHHHHHHHHhhcCCCEEEEEEcchhHHHHHHHHHHHHHHhCCceeeeEEEEEEeeeeeeecc
Q 024048 15 AISENELRITA-QGRLRNYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRRVVGLHQNTSTGSIDITDVWEPLE 93 (273)
Q Consensus 15 p~~~NeIrVt~-k~~irnYV~yA~~LL~e~g~~eVvIkA~GkAIsKAV~VAEILKrRi~GLhQ~t~Issv~I~De~EP~e 93 (273)
+.++|+|+|+. +.++.+||.+|+.+|+ ++++|+|||||+||++||+||||||+|+-..++.+.|++.++.++
T Consensus 17 ~~~~N~I~Vs~~kkP~~nYV~~a~~~l~--g~~eV~LkA~G~AIskAV~VAEiLkrr~l~~ikkI~t~t~~i~~~----- 89 (130)
T 1vm0_A 17 SQKKNRIQVSNTKKPLFFYVNLAKRYMQ--QYNDVELSALGMAIATVVTVTEILKNNGFAVEKKIMTSIVDIKDD----- 89 (130)
T ss_dssp --CTTEEECCCTTSCHHHHHHHHHHHHH--HHSEEEEEEEGGGHHHHHHHHHHHHHTTSEEEEEEEEEEEEEC-------
T ss_pred CCCCCEEEEecCCCCceeHHHHHHHHHc--CCCEEEEEechHHHHHHHHHHHHHHhcCcceEEEEEeeeEEeccC-----
Confidence 46799999996 3677799999999997 589999999999999999999999999755556666677776544
Q ss_pred CCCccceeeeeeeeEEEEEeccc
Q 024048 94 EGLLPLETTRHVSAITITLSRKE 116 (273)
Q Consensus 94 EGL~~l~~tR~VS~I~ItLSk~~ 116 (273)
++ .+..++|.|+|+|.+.+
T Consensus 90 ~~----~r~v~~skIEI~L~k~~ 108 (130)
T 1vm0_A 90 AR----GRPVQKAKIEITLVKSE 108 (130)
T ss_dssp --------CEEEEEEEEEEEECT
T ss_pred CC----CcccccceEEEEEEecC
Confidence 11 14556799999999864
No 8
>3iab_B Ribonucleases P/MRP protein subunit POP7; RNAse P, ribonuclease P, ribonuclease MRP, POP6, POP6P, POP7, POP7P, NME1, yeast, tRNA; 2.70A {Saccharomyces cerevisiae}
Probab=99.69 E-value=3e-16 Score=132.02 Aligned_cols=108 Identities=14% Similarity=0.200 Sum_probs=87.2
Q ss_pred ccccCCCCCCCCC----CCEEEEcCCCchHHHHHHHHHHHhh---cCCCEEEEEEcchhHHHHHHHHHHHHHHhCCceee
Q 024048 5 QKVEKPKTETAIS----ENELRITAQGRLRNYISYAISLLEE---KGANEVVLKATGRAINKTVMIAELLKRRVVGLHQN 77 (273)
Q Consensus 5 ~rV~kp~~e~p~~----~NeIrVt~k~~irnYV~yA~~LL~e---~g~~eVvIkA~GkAIsKAV~VAEILKrRi~GLhQ~ 77 (273)
+.+.++.+..|.. +|+|+|++++++...+..|.+||+. .+.++|+|||||+||+||+++|..++++. ++...
T Consensus 13 k~irk~P~~k~~s~~~~~~~iYV~skTpf~S~vkRi~KlL~~~~k~~~~eV~v~GmGkAIeKal~lAl~fq~~~-~~~V~ 91 (140)
T 3iab_B 13 KRVTKHPSLKTLTHKQIHTTIFVKSTTPYVSALKRINKFLDSVHKQGSSYVAVLGMGKAVEKTLALGCHFQDQK-NKKIE 91 (140)
T ss_dssp -CCEECCCCCCCCHHHHTTEEECCSSCCHHHHHHHHHHHHHHHHHHTCSEEEEEEEGGGHHHHHHHHHHHHHTT-CCCEE
T ss_pred CccCCCCCCcCccccccCceEEEecCCchHHHHHHHHHHHHHhhcCCCcEEEEEechHHHHHHHHHHHHHhhcC-CEEEE
Confidence 4455554445544 8999999999999999999999974 16899999999999999999999999974 57788
Q ss_pred eEEEEEEeeeeeeeccCC------------CccceeeeeeeeEEEEEe
Q 024048 78 TSTGSIDITDVWEPLEEG------------LLPLETTRHVSAITITLS 113 (273)
Q Consensus 78 t~Issv~I~De~EP~eEG------------L~~l~~tR~VS~I~ItLS 113 (273)
+.++||++.|+++|.++. .+...++|+||+|||.|+
T Consensus 92 V~T~TV~vvDd~~~~~~~~~~~d~~~~d~d~e~~~rkR~vS~VeirIy 139 (140)
T 3iab_B 92 VYTKTIEVLDEVITEGQADIDMESDVEDDDKETQLKKRAVSGVELRIY 139 (140)
T ss_dssp EEEEEEEEEEECC--------------------CEEEEEEEEEEEEEE
T ss_pred EEeceEEEEEeeeecCCcccccccccccccccchheeeeeeeEEEEEe
Confidence 999999999999998664 577889999999999986
No 9
>3iab_A Ribonucleases P/MRP protein subunit POP6; RNAse P, ribonuclease P, ribonuclease MRP, POP6, POP6P, POP7, POP7P, NME1, yeast, tRNA; 2.70A {Saccharomyces cerevisiae}
Probab=98.12 E-value=2.6e-05 Score=66.69 Aligned_cols=90 Identities=19% Similarity=0.165 Sum_probs=70.3
Q ss_pred EEEcCCCchHHHHHHHHHHHhh-----cCCCEEEEEEcchhHHHHHHHHHHHHHHh----CCceeeeEEEEEEeeeeeee
Q 024048 21 LRITAQGRLRNYISYAISLLEE-----KGANEVVLKATGRAINKTVMIAELLKRRV----VGLHQNTSTGSIDITDVWEP 91 (273)
Q Consensus 21 IrVt~k~~irnYV~yA~~LL~e-----~g~~eVvIkA~GkAIsKAV~VAEILKrRi----~GLhQ~t~Issv~I~De~EP 91 (273)
+.|+++..|+..|+.-.++|+. ...+.|.|.+.|..|.|++++.||+|+++ +.|||++++++.....+
T Consensus 47 ~kIsKNDnIK~~V~kL~~~l~~~~~s~~~~~~V~l~syg~hIQKmLSIvEI~Kk~~~~~~~~l~Q~NkL~~f~~v~~--- 123 (158)
T 3iab_A 47 HGISKNDNIKKSVNKLDKQINMADRSLGLQQVVCIFSYGPHIQKMLSILEIFKKGYIKNNKKIYQWNKLTSFDIKRE--- 123 (158)
T ss_dssp EECCTTCCHHHHHHHHHHHHTCSCTTTTCEEEEEEEEEGGGHHHHHHHHHHHHHHHHTTTCCCEEEEEEEEEEEC-----
T ss_pred EEeccCchHHHHHHHHHHHHhhhccccccCceEEEEecChHHHHHHHHHHHHHHHhhcCCccHHHHhhhhhhccCCc---
Confidence 4599999999999999998851 25689999999999999999999999987 34999999998755432
Q ss_pred ccCCC-ccceeeeeeeeEEEEEeccc
Q 024048 92 LEEGL-LPLETTRHVSAITITLSRKE 116 (273)
Q Consensus 92 ~eEGL-~~l~~tR~VS~I~ItLSk~~ 116 (273)
|- +-++++-+||-+-+.+++++
T Consensus 124 ---grNELle~r~~vPILi~~i~~~~ 146 (158)
T 3iab_A 124 ---GRNELQEERLKVPILVTMVSDSE 146 (158)
T ss_dssp --------CCCCEEEEEEEEEEESSS
T ss_pred ---cccHHHHhhcCCCEEEEEEeccc
Confidence 22 22456668888777778764
No 10
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=88.94 E-value=0.077 Score=42.73 Aligned_cols=8 Identities=13% Similarity=0.422 Sum_probs=3.8
Q ss_pred eeeeeEEE
Q 024048 103 RHVSAITI 110 (273)
Q Consensus 103 R~VS~I~I 110 (273)
+++..|.|
T Consensus 53 ~~lg~v~I 60 (119)
T 1b34_A 53 VQLETLSI 60 (119)
T ss_dssp EEEEEEEE
T ss_pred eEcceEEE
Confidence 44554444
No 11
>2ek0_A Stage V sporulation protein S (spovs) related Pro; structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus} PDB: 2eh1_A
Probab=80.61 E-value=18 Score=28.09 Aligned_cols=51 Identities=22% Similarity=0.382 Sum_probs=37.8
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcCCCEEEEEEcc-hhHHHHHHHHHHHHHHh
Q 024048 19 NELRITAQGRLRNYISYAISLLEEKGANEVVLKATG-RAINKTVMIAELLKRRV 71 (273)
Q Consensus 19 NeIrVt~k~~irnYV~yA~~LL~e~g~~eVvIkA~G-kAIsKAV~VAEILKrRi 71 (273)
+.+.|.++++....-..--..+.+ ...|.|.++| .|++.||.-.-|-+.-+
T Consensus 2 e~LKVSs~S~P~~VAGAIA~~lRe--~~~veiqAIGa~AvNqAVKAIAIARg~l 53 (90)
T 2ek0_A 2 ETLRVSSKSRPNSVAGAIAAMLRT--KGEVEVQAIGPQAVNQAVKAIAIARGYI 53 (90)
T ss_dssp CEEEECTTCCHHHHHHHHHHHHHH--HSEEEEEECSHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEcCCCChHHHHHHHHHHHhc--CCceEEEEECHHHHHHHHHHHHHHHHhh
Confidence 468999999996666665666665 3699999999 68998887555554444
No 12
>2k9u_B Filamin-binding LIM protein 1; cytoskeletal complex, alternative splicing, cell adhesion, cell junction, cell shape, cytoplasm, cytoskeleton; NMR {Homo sapiens}
Probab=36.12 E-value=21 Score=21.78 Aligned_cols=18 Identities=33% Similarity=0.372 Sum_probs=13.9
Q ss_pred eeeeeeeEEEEEecccCC
Q 024048 101 TTRHVSAITITLSRKELD 118 (273)
Q Consensus 101 ~tR~VS~I~ItLSk~~LD 118 (273)
.+|.+|+|.|||..--.|
T Consensus 6 eKR~aSSvFITLapp~r~ 23 (26)
T 2k9u_B 6 EKRVASSVFITLAPPRRD 23 (26)
T ss_dssp SSSCEEEEEEEECCSSCC
T ss_pred hhheeeeEEEEecCcccc
Confidence 579999999999864333
No 13
>3pam_A Transmembrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.31A {Bartonella henselae}
Probab=23.32 E-value=1.4e+02 Score=24.85 Aligned_cols=51 Identities=16% Similarity=0.157 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhhcCCC--------------EEEEEEcchhHHHHHHHHHHHHHHhCCceeeeEEEEEE
Q 024048 31 NYISYAISLLEEKGAN--------------EVVLKATGRAINKTVMIAELLKRRVVGLHQNTSTGSID 84 (273)
Q Consensus 31 nYV~yA~~LL~e~g~~--------------eVvIkA~GkAIsKAV~VAEILKrRi~GLhQ~t~Issv~ 84 (273)
.=+..|.+||++.+.+ ++.|.... +....+||+|+..+..+--.++|..++
T Consensus 100 ~d~~kAk~LL~eaG~~~~~~g~~~~~G~~l~l~~~~~~---~~~~~~a~~iq~~l~~iGI~v~i~~~~ 164 (259)
T 3pam_A 100 LNAQKAWKLLQEAGFTKKNNRLIAPNGLPFQFEIMTQS---LEEEKVALAFQSNLSRLGIHAEIRTVD 164 (259)
T ss_dssp HHHHHHHHHHHHTTCEEETTEEECTTSCBCEEEEEESS---HHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred cCHHHHHHHHHHcCCccCCCcEECCCCcEEEEEEEeCC---chHHHHHHHHHHHHHHcCCEEEEEecC
Confidence 3479999999876543 45555432 445677888888775443344555443
No 14
>1lxn_A Hypothetical protein MTH1187; hypothetical structure, structural genomics, PSI, protein ST initiative; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: d.58.48.1
Probab=20.22 E-value=61 Score=24.81 Aligned_cols=49 Identities=14% Similarity=0.206 Sum_probs=33.0
Q ss_pred CCchHHHHHHHHHHHhhcCCCEEEEEEcchhHHH--HHHHHHHHHHHhCCce
Q 024048 26 QGRLRNYISYAISLLEEKGANEVVLKATGRAINK--TVMIAELLKRRVVGLH 75 (273)
Q Consensus 26 k~~irnYV~yA~~LL~e~g~~eVvIkA~GkAIsK--AV~VAEILKrRi~GLh 75 (273)
...+..||..|++.|++.+. ...+.+||-.|.= .=.|-++||+-+.-+|
T Consensus 15 ~~svs~~Va~~i~~i~~sgl-~y~~~pm~T~iEG~e~devm~vv~~~~e~~~ 65 (99)
T 1lxn_A 15 STSLSSYVAAAVEALKKLNV-RYEISGMGTLLEAEDLDELMEAVKAAHEAVL 65 (99)
T ss_dssp SSCCHHHHHHHHHHHTTSSC-EEEEETTEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHcCC-CeEeCCCeeEEECCCHHHHHHHHHHHHHHHH
Confidence 35789999999999987554 4488888866652 3444555555543344
Done!