Your job contains 1 sequence.
>024049
MVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNID
LQVAGGKISVQQNLALLANQARLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAV
VVPKSGASLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQEVIP
GASPSALETTLVKLPEELLKGKPSQDTNLIVGVPPAEILARCEFLEPLSEATLSDYEWLV
ADLQKPAPVLMKRVQHYLSSLIQSFLAKATLKS
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 024049
(273 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2206194 - symbol:AT1G31410 species:3702 "Arabi... 898 5.1e-90 1
TIGR_CMR|BA_1300 - symbol:BA_1300 "spermidine/putrescine ... 179 4.6e-12 1
UNIPROTKB|P31133 - symbol:potF "putrescine ABC transporte... 156 5.1e-09 1
TIGR_CMR|CPS_0103 - symbol:CPS_0103 "putrescine ABC trans... 134 2.1e-06 1
TIGR_CMR|CPS_4671 - symbol:CPS_4671 "putrescine ABC trans... 132 3.4e-06 1
UNIPROTKB|Q9KS36 - symbol:VC1425 "Spermidine/putrescine A... 130 6.0e-06 1
TIGR_CMR|VC_1425 - symbol:VC_1425 "spermidine/putrescine ... 130 6.0e-06 1
UNIPROTKB|Q9KKJ4 - symbol:VCA1113 "Spermidine/putrescine ... 118 6.7e-06 2
TIGR_CMR|VC_A1113 - symbol:VC_A1113 "spermidine/putrescin... 118 6.7e-06 2
TIGR_CMR|SPO_3469 - symbol:SPO_3469 "putrescine ABC trans... 126 1.7e-05 1
TIGR_CMR|SO_1270 - symbol:SO_1270 "polyamine ABC transpor... 126 1.8e-05 1
UNIPROTKB|P0AFK9 - symbol:potD "putrescine / spermidine A... 123 3.5e-05 1
>TAIR|locus:2206194 [details] [associations]
symbol:AT1G31410 species:3702 "Arabidopsis thaliana"
[GO:0005215 "transporter activity" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0006810 "transport" evidence=IEA]
[GO:0009941 "chloroplast envelope" evidence=IDA] InterPro:IPR001188
PRINTS:PR00909 EMBL:CP002684 GO:GO:0009941 GO:GO:0042597
eggNOG:COG0687 GO:GO:0019808 GO:GO:0015846 EMBL:BT015412
IPI:IPI00520881 RefSeq:NP_174426.2 UniGene:At.40347
ProteinModelPortal:Q66GJ0 PaxDb:Q66GJ0 PRIDE:Q66GJ0
EnsemblPlants:AT1G31410.1 GeneID:840031 KEGG:ath:AT1G31410
TAIR:At1g31410 InParanoid:Q66GJ0 OMA:GTMVIAY PhylomeDB:Q66GJ0
ProtClustDB:CLSN2680340 Genevestigator:Q66GJ0 Uniprot:Q66GJ0
Length = 524
Score = 898 (321.2 bits), Expect = 5.1e-90, P = 5.1e-90
Identities = 173/272 (63%), Positives = 212/272 (77%)
Query: 1 MVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNID 60
MVIAYKKSKF+ + LAPIEDW DLWRPELAGRI+MVNSPREV+G+VLKYM ASYN+ ++D
Sbjct: 244 MVIAYKKSKFQNYKLAPIEDWADLWRPELAGRIAMVNSPREVVGAVLKYMRASYNTTDLD 303
Query: 61 LQVAGGKISVXXXXXXXXXXXRLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAV 120
QV GG+++V RLFDS +YLKAF +GDVWV VGWSSDV+P KRMSNV V
Sbjct: 304 SQVPGGRLAVEKNLASLMKQIRLFDSNNYLKAFNVGDVWVTVGWSSDVIPVAKRMSNVTV 363
Query: 121 VVPKSGASLWADLWAIPAASRL--ETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQEV 178
+VPKSGA+LWADLWAIPA S E +Q GGRVRGPSPLI+QWIEFCLQ AR+LPF +EV
Sbjct: 364 IVPKSGATLWADLWAIPAVSDSGKEAEQRGGRVRGPSPLINQWIEFCLQPARSLPFTREV 423
Query: 179 IPGASPSALETTLVKLPEELLKGKPSQDTNLIVGVPPAEILARCEFLEPLSEATLSDYEW 238
IPGASPSAL+ LV PE+ K + DTNL+ GVPP EIL++CEFLEPL EATLS+Y
Sbjct: 424 IPGASPSALDGPLVTEPEKTKKDRTKLDTNLVTGVPPPEILSKCEFLEPLPEATLSEYRL 483
Query: 239 LVADLQKPA--PVLMKRVQHYLSSLIQSFLAK 268
L+ ++K + P L+++++ +S ++ F AK
Sbjct: 484 LIETVRKQSQRPGLVEKLKDIVSIKVRGFRAK 515
>TIGR_CMR|BA_1300 [details] [associations]
symbol:BA_1300 "spermidine/putrescine ABC transporter,
spermidine/putrescine-binding protein" species:198094 "Bacillus
anthracis str. Ames" [GO:0015417 "polyamine-transporting ATPase
activity" evidence=ISS] [GO:0015847 "putrescine transport"
evidence=ISS] [GO:0015848 "spermidine transport" evidence=ISS]
[GO:0042626 "ATPase activity, coupled to transmembrane movement of
substances" evidence=ISS] InterPro:IPR001188 PIRSF:PIRSF019574
PRINTS:PR00909 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0042597 KO:K11069 GO:GO:0019808
HOGENOM:HOG000263814 GO:GO:0015846 RefSeq:NP_843768.1
RefSeq:YP_017915.1 RefSeq:YP_027472.1 HSSP:P23861
ProteinModelPortal:Q81TH5 IntAct:Q81TH5 DNASU:1085223
EnsemblBacteria:EBBACT00000008763 EnsemblBacteria:EBBACT00000013649
EnsemblBacteria:EBBACT00000023557 GeneID:1085223 GeneID:2815193
GeneID:2852748 KEGG:ban:BA_1300 KEGG:bar:GBAA_1300 KEGG:bat:BAS1202
OMA:LYSWADY ProtClustDB:CLSK916172
BioCyc:BANT260799:GJAJ-1277-MONOMER
BioCyc:BANT261594:GJ7F-1335-MONOMER Uniprot:Q81TH5
Length = 345
Score = 179 (68.1 bits), Expect = 4.6e-12, P = 4.6e-12
Identities = 47/139 (33%), Positives = 65/139 (46%)
Query: 3 IAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNIDLQ 62
IAY K K+ K AP W DLW + G ++++N REV+G LK G S NS D Q
Sbjct: 133 IAYNK-KYVKE--APTS-WTDLWNEKYKGHVTLLNDSREVLGMGLKKNGFS-NSTKDDAQ 187
Query: 63 VAGGKISVXXXXXXXXXXXRLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVV 122
+ + FD+ + + F D W+ WS D K +V VV
Sbjct: 188 LKTAATDLQKLLPNLLA----FDTDNIKQKFITEDAWIGTVWSGDAAFIAKDNKDVEYVV 243
Query: 123 PKSGASLWADLWAIPAASR 141
PK G ++WAD AIP ++
Sbjct: 244 PKEGGTIWADTLAIPKGAK 262
>UNIPROTKB|P31133 [details] [associations]
symbol:potF "putrescine ABC transporter - periplasmic
binding protein" species:83333 "Escherichia coli K-12" [GO:0019808
"polyamine binding" evidence=IEA] [GO:0015847 "putrescine
transport" evidence=IDA] [GO:0015594 "putrescine-importing ATPase
activity" evidence=RCA;IMP] [GO:0043190 "ATP-binding cassette (ABC)
transporter complex" evidence=RCA] [GO:0042597 "periplasmic space"
evidence=IEA] InterPro:IPR001188 PIRSF:PIRSF019574 PRINTS:PR00909
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0042597 eggNOG:COG0687 GO:GO:0019808
GO:GO:0015594 EMBL:M93239 PIR:F64823 RefSeq:NP_415375.1
RefSeq:YP_489127.1 PDB:1A99 PDBsum:1A99 ProteinModelPortal:P31133
SMR:P31133 DIP:DIP-10531N IntAct:P31133 TCDB:3.A.1.11.2
SWISS-2DPAGE:P31133 PRIDE:P31133 EnsemblBacteria:EBESCT00000000165
EnsemblBacteria:EBESCT00000000166 EnsemblBacteria:EBESCT00000016488
GeneID:12931000 GeneID:945480 KEGG:ecj:Y75_p0827 KEGG:eco:b0854
PATRIC:32116913 EchoBASE:EB1586 EcoGene:EG11629
HOGENOM:HOG000263815 KO:K11073 OMA:HPAEAHA ProtClustDB:PRK10682
BioCyc:EcoCyc:POTF-MONOMER BioCyc:ECOL316407:JW0838-MONOMER
EvolutionaryTrace:P31133 Genevestigator:P31133 Uniprot:P31133
Length = 370
Score = 156 (60.0 bits), Expect = 5.1e-09, P = 5.1e-09
Identities = 41/137 (29%), Positives = 66/137 (48%)
Query: 16 APIEDWKDLWRPELAGR-----ISMVNSPREVIGSVLKYMGASYNSNNIDLQVAGGKISV 70
AP++ W + +PE + +S +++P EV +VL Y+G NS D G +
Sbjct: 155 APVDSWDLILKPENLEKLKSCGVSFLDAPEEVFATVLNYLGKDPNSTKAD-DYTGPATDL 213
Query: 71 XXXXXXXXXXXRLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMS------NVAVVVPK 124
R F S+ Y+ GD+ VA+GW+ DV A R NV+ +PK
Sbjct: 214 LLKLRPNI---RYFHSSQYINDLANGDICVAIGWAGDVWQASNRAKEAKNGVNVSFSIPK 270
Query: 125 SGASLWADLWAIPAASR 141
GA + D++A+PA ++
Sbjct: 271 EGAMAFFDVFAMPADAK 287
>TIGR_CMR|CPS_0103 [details] [associations]
symbol:CPS_0103 "putrescine ABC transporter, periplasmic
putrescine-binding protein" species:167879 "Colwellia
psychrerythraea 34H" [GO:0015594 "putrescine-importing ATPase
activity" evidence=ISS] [GO:0015847 "putrescine transport"
evidence=ISS] InterPro:IPR001188 PIRSF:PIRSF019574 PRINTS:PR00909
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0042597
eggNOG:COG0687 GO:GO:0019808 HOGENOM:HOG000263815 KO:K11073
GO:GO:0015846 RefSeq:YP_266871.1 ProteinModelPortal:Q48AP2
SMR:Q48AP2 STRING:Q48AP2 GeneID:3518986 KEGG:cps:CPS_0103
PATRIC:21463621 OMA:KRLEKND ProtClustDB:CLSK906175
BioCyc:CPSY167879:GI48-206-MONOMER Uniprot:Q48AP2
Length = 369
Score = 134 (52.2 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 41/133 (30%), Positives = 66/133 (49%)
Query: 16 APIEDWKDLWRPELA---GR--ISMVNSPREVIGSVLKYMGASYNSNNIDLQVAGGKISV 70
AP + + ++ P+ A G+ +++++SP E+I L Y+G + NS+ A GK+
Sbjct: 155 APTDSLELIFNPKYAEKLGKCGLAVLDSPDEMIPQALLYLGLNPNSHKASDYKAAGKLLA 214
Query: 71 XXXXXXXXXXXRLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMS---NVAVV---VPK 124
F S+ Y+ GD+ VA G+S DV A R N ++ +PK
Sbjct: 215 EIRPHITY-----FHSSRYITDLANGDICVAYGFSGDVFQAKARAEEAGNGHIIEYKIPK 269
Query: 125 SGASLWADLWAIP 137
GA+LW D+ AIP
Sbjct: 270 EGANLWFDMLAIP 282
>TIGR_CMR|CPS_4671 [details] [associations]
symbol:CPS_4671 "putrescine ABC transporter, periplasmic
putrescine-binding protein" species:167879 "Colwellia
psychrerythraea 34H" [GO:0015594 "putrescine-importing ATPase
activity" evidence=ISS] [GO:0015847 "putrescine transport"
evidence=ISS] InterPro:IPR001188 PIRSF:PIRSF019574 PRINTS:PR00909
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0042597
eggNOG:COG0687 GO:GO:0019808 HOGENOM:HOG000263815 KO:K11073
GO:GO:0015846 RefSeq:YP_271315.1 ProteinModelPortal:Q47V57
SMR:Q47V57 STRING:Q47V57 GeneID:3521843 KEGG:cps:CPS_4671
PATRIC:21472163 OMA:NTNFIHY ProtClustDB:CLSK938295
BioCyc:CPSY167879:GI48-4677-MONOMER Uniprot:Q47V57
Length = 361
Score = 132 (51.5 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 38/126 (30%), Positives = 61/126 (48%)
Query: 24 LWRPELAGR-----ISMVNSPREVIGSVLKYMGASYNSNNIDLQVAGGKISVXXXXXXXX 78
+++PE+A + I +++SP EV+ L Y G NS + D + K +
Sbjct: 155 IFKPEVAAKLADCGIGILDSPAEVMSIALNYAGLDPNSES-DKDLKATKAMIKKARPHY- 212
Query: 79 XXXRLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSN------VAVVVPKSGASLWAD 132
+ FDS+ + GD+ VA+G++ D+L A R S V ++PK G W D
Sbjct: 213 ---KYFDSSRLIADLANGDICVALGYNGDMLQANSRASEAGQGVKVEYLIPKEGTIAWFD 269
Query: 133 LWAIPA 138
+ AIPA
Sbjct: 270 MMAIPA 275
>UNIPROTKB|Q9KS36 [details] [associations]
symbol:VC1425 "Spermidine/putrescine ABC transporter,
periplasmic spermidine/putrescine-binding protein" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0015417
"polyamine-transporting ATPase activity" evidence=ISS] [GO:0015847
"putrescine transport" evidence=ISS] [GO:0015848 "spermidine
transport" evidence=ISS] InterPro:IPR001188 PIRSF:PIRSF019574
PRINTS:PR00909 GenomeReviews:AE003852_GR GO:GO:0042597 KO:K11069
GO:GO:0019808 GO:GO:0015417 GO:GO:0015847 GO:GO:0015848 HSSP:P23861
OMA:LYSWADY EMBL:AE004221 PIR:C82201 RefSeq:NP_231068.1
ProteinModelPortal:Q9KS36 SMR:Q9KS36 DNASU:2614057 GeneID:2614057
KEGG:vch:VC1425 PATRIC:20081912 ProtClustDB:CLSK874368
Uniprot:Q9KS36
Length = 366
Score = 130 (50.8 bits), Expect = 6.0e-06, P = 6.0e-06
Identities = 33/123 (26%), Positives = 59/123 (47%)
Query: 19 EDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNIDLQVAGGKISVXXXXXXXX 78
+ W DLW+PEL G++ +++ REV L+ +G S NS + D Q+ +
Sbjct: 171 QSWGDLWKPELKGQLMLMDDTREVFHIALRKLGYSGNSTD-DKQIDEAYAELQKLMPNVL 229
Query: 79 XXXRLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPA 138
+F+S + + G+V + + W+ A K + +V PK G W D +AI +
Sbjct: 230 ----VFNSDNPAAPYLSGEVGLGMLWNGSAAAAQKEGLPIKLVFPKEGGIGWVDNFAISS 285
Query: 139 ASR 141
++
Sbjct: 286 GAK 288
>TIGR_CMR|VC_1425 [details] [associations]
symbol:VC_1425 "spermidine/putrescine ABC transporter,
periplasmic spermidine/putrescine-binding protein" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0015417
"polyamine-transporting ATPase activity" evidence=ISS] [GO:0015847
"putrescine transport" evidence=ISS] [GO:0015848 "spermidine
transport" evidence=ISS] InterPro:IPR001188 PIRSF:PIRSF019574
PRINTS:PR00909 GenomeReviews:AE003852_GR GO:GO:0042597 KO:K11069
GO:GO:0019808 GO:GO:0015417 GO:GO:0015847 GO:GO:0015848 HSSP:P23861
OMA:LYSWADY EMBL:AE004221 PIR:C82201 RefSeq:NP_231068.1
ProteinModelPortal:Q9KS36 SMR:Q9KS36 DNASU:2614057 GeneID:2614057
KEGG:vch:VC1425 PATRIC:20081912 ProtClustDB:CLSK874368
Uniprot:Q9KS36
Length = 366
Score = 130 (50.8 bits), Expect = 6.0e-06, P = 6.0e-06
Identities = 33/123 (26%), Positives = 59/123 (47%)
Query: 19 EDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNIDLQVAGGKISVXXXXXXXX 78
+ W DLW+PEL G++ +++ REV L+ +G S NS + D Q+ +
Sbjct: 171 QSWGDLWKPELKGQLMLMDDTREVFHIALRKLGYSGNSTD-DKQIDEAYAELQKLMPNVL 229
Query: 79 XXXRLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPA 138
+F+S + + G+V + + W+ A K + +V PK G W D +AI +
Sbjct: 230 ----VFNSDNPAAPYLSGEVGLGMLWNGSAAAAQKEGLPIKLVFPKEGGIGWVDNFAISS 285
Query: 139 ASR 141
++
Sbjct: 286 GAK 288
>UNIPROTKB|Q9KKJ4 [details] [associations]
symbol:VCA1113 "Spermidine/putrescine ABC transporter,
periplasmic spermidine/putrescine-binding protein" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0015417
"polyamine-transporting ATPase activity" evidence=ISS] [GO:0015847
"putrescine transport" evidence=ISS] [GO:0015848 "spermidine
transport" evidence=ISS] InterPro:IPR001188 PIRSF:PIRSF019574
PRINTS:PR00909 GenomeReviews:AE003853_GR GO:GO:0042597
GO:GO:0019808 GO:GO:0015417 GO:GO:0015847 GO:GO:0015848 KO:K02055
HSSP:P23861 EMBL:AE004436 PIR:B82377 RefSeq:NP_233492.1
ProteinModelPortal:Q9KKJ4 DNASU:2612172 GeneID:2612172
KEGG:vch:VCA1113 PATRIC:20086744 OMA:TIHYANA ProtClustDB:CLSK789277
Uniprot:Q9KKJ4
Length = 343
Score = 118 (46.6 bits), Expect = 6.7e-06, Sum P(2) = 6.7e-06
Identities = 30/124 (24%), Positives = 55/124 (44%)
Query: 18 IEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNIDLQVAGGKISVXXXXXXX 77
I W DLW + ++ +++ R+V G LK G S N+ N + ++ S+
Sbjct: 143 ITKWADLWDKQYEQQVMLIDDIRDVFGMALKLNGFSINTKNEE-EIKKAYESLVALKKNV 201
Query: 78 XXXXRLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIP 137
D+ H + G+ + + W+ + M + V+P+ GA LW D + IP
Sbjct: 202 LLYNS--DAPHV--PYVSGEATLGMQWNGNAYQGQVEMPELKFVMPEEGAVLWMDNFTIP 257
Query: 138 AASR 141
+ S+
Sbjct: 258 SGSK 261
Score = 49 (22.3 bits), Expect = 6.7e-06, Sum P(2) = 6.7e-06
Identities = 24/82 (29%), Positives = 35/82 (42%)
Query: 156 PLIHQWIEFCLQTARALPFKQEVIPGASPSALETTLVKLPEELLKGKPSQDTNLIVGVPP 215
PL H++I F Q Q + G + SA + LP EL +D I P
Sbjct: 264 PLAHKFINFMYQPENQAEIVQSL--GYA-SATKGGRALLPAEL------RDNPTIF--PS 312
Query: 216 AEILARCEFLEPLSEATLSDYE 237
E + + EF+ + TL+ YE
Sbjct: 313 DEDMKKGEFINDVGPETLAIYE 334
>TIGR_CMR|VC_A1113 [details] [associations]
symbol:VC_A1113 "spermidine/putrescine ABC transporter,
periplasmic spermidine/putrescine-binding protein" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0015417
"polyamine-transporting ATPase activity" evidence=ISS] [GO:0015847
"putrescine transport" evidence=ISS] [GO:0015848 "spermidine
transport" evidence=ISS] InterPro:IPR001188 PIRSF:PIRSF019574
PRINTS:PR00909 GenomeReviews:AE003853_GR GO:GO:0042597
GO:GO:0019808 GO:GO:0015417 GO:GO:0015847 GO:GO:0015848 KO:K02055
HSSP:P23861 EMBL:AE004436 PIR:B82377 RefSeq:NP_233492.1
ProteinModelPortal:Q9KKJ4 DNASU:2612172 GeneID:2612172
KEGG:vch:VCA1113 PATRIC:20086744 OMA:TIHYANA ProtClustDB:CLSK789277
Uniprot:Q9KKJ4
Length = 343
Score = 118 (46.6 bits), Expect = 6.7e-06, Sum P(2) = 6.7e-06
Identities = 30/124 (24%), Positives = 55/124 (44%)
Query: 18 IEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNIDLQVAGGKISVXXXXXXX 77
I W DLW + ++ +++ R+V G LK G S N+ N + ++ S+
Sbjct: 143 ITKWADLWDKQYEQQVMLIDDIRDVFGMALKLNGFSINTKNEE-EIKKAYESLVALKKNV 201
Query: 78 XXXXRLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIP 137
D+ H + G+ + + W+ + M + V+P+ GA LW D + IP
Sbjct: 202 LLYNS--DAPHV--PYVSGEATLGMQWNGNAYQGQVEMPELKFVMPEEGAVLWMDNFTIP 257
Query: 138 AASR 141
+ S+
Sbjct: 258 SGSK 261
Score = 49 (22.3 bits), Expect = 6.7e-06, Sum P(2) = 6.7e-06
Identities = 24/82 (29%), Positives = 35/82 (42%)
Query: 156 PLIHQWIEFCLQTARALPFKQEVIPGASPSALETTLVKLPEELLKGKPSQDTNLIVGVPP 215
PL H++I F Q Q + G + SA + LP EL +D I P
Sbjct: 264 PLAHKFINFMYQPENQAEIVQSL--GYA-SATKGGRALLPAEL------RDNPTIF--PS 312
Query: 216 AEILARCEFLEPLSEATLSDYE 237
E + + EF+ + TL+ YE
Sbjct: 313 DEDMKKGEFINDVGPETLAIYE 334
>TIGR_CMR|SPO_3469 [details] [associations]
symbol:SPO_3469 "putrescine ABC transporter, periplasmic
putrescine-binding protein" species:246200 "Ruegeria pomeroyi
DSS-3" [GO:0015489 "putrescine transmembrane transporter activity"
evidence=ISS] [GO:0015847 "putrescine transport" evidence=ISS]
[GO:0019810 "putrescine binding" evidence=ISS] [GO:0030288 "outer
membrane-bounded periplasmic space" evidence=ISS] [GO:0042626
"ATPase activity, coupled to transmembrane movement of substances"
evidence=ISS] InterPro:IPR001188 PIRSF:PIRSF019574 PRINTS:PR00909
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0042597 GO:GO:0019808
HOGENOM:HOG000263815 KO:K11073 OMA:HPAEAHA GO:GO:0015846
RefSeq:YP_168665.1 ProteinModelPortal:Q5LMU3 SMR:Q5LMU3
GeneID:3195405 KEGG:sil:SPO3469 PATRIC:23380403
ProtClustDB:CLSK759288 Uniprot:Q5LMU3
Length = 361
Score = 126 (49.4 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 38/133 (28%), Positives = 65/133 (48%)
Query: 16 APIEDWKDLWRPE----LAG-RISMVNSPREVIGSVLKYMGASYNSNNIDLQVAGGKISV 70
AP+ ++ PE LA + +++P E+I + LKY+G + +S++ D+ + +
Sbjct: 147 APMNSMDLVFNPENMEKLASCGVHFLDAPTELIPATLKYLGENPDSHDADVIAKAEPVLM 206
Query: 71 XXXXXXXXXXXRLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNV--AVVVP----K 124
+ F S+ Y+ A GD+ VA+GWS D+L A R + V + K
Sbjct: 207 AVRPYI-----QKFHSSEYINALANGDICVAIGWSGDILQARDRAAEADNGVEIEYHAFK 261
Query: 125 SGASLWADLWAIP 137
G+ +W D AIP
Sbjct: 262 QGSLMWFDQMAIP 274
>TIGR_CMR|SO_1270 [details] [associations]
symbol:SO_1270 "polyamine ABC transporter, periplasmic
polyamine-binding protein" species:211586 "Shewanella oneidensis
MR-1" [GO:0015417 "polyamine-transporting ATPase activity"
evidence=ISS] [GO:0015847 "putrescine transport" evidence=ISS]
[GO:0015848 "spermidine transport" evidence=ISS] [GO:0030288 "outer
membrane-bounded periplasmic space" evidence=ISS]
InterPro:IPR001188 PIRSF:PIRSF019574 PRINTS:PR00909 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0042597 GO:GO:0019808
HOGENOM:HOG000263815 KO:K11073 GO:GO:0015846 OMA:KRLEKND
ProtClustDB:CLSK906175 RefSeq:NP_716893.1 HSSP:P31133
ProteinModelPortal:Q8EHF3 SMR:Q8EHF3 GeneID:1169090
KEGG:son:SO_1270 PATRIC:23522186 Uniprot:Q8EHF3
Length = 367
Score = 126 (49.4 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 49/180 (27%), Positives = 79/180 (43%)
Query: 17 PIEDWKDLWRPELAGRIS-----MVNSPREVIGSVLKYMGASYNSNNI-DLQVAGGKISV 70
P + ++ P+ A +IS M++S +++ + Y+G NS D + AG +
Sbjct: 154 PFNSMELIFNPKYAEKISKCGFAMLDSADDMVPQAMIYLGLDPNSTKAEDYEKAGELLEK 213
Query: 71 XXXXXXXXXXXRLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRM------SNVAVVVPK 124
F S+ Y+ GD+ VA G+S DV A R + + +PK
Sbjct: 214 IRPYVTY------FHSSRYISDLANGDICVAYGFSGDVFQAAARADEAGNGNKIGYSIPK 267
Query: 125 SGASLWADLWAIPA-ASRLET--KQIGGRVRGPSPL--IHQWIEFCLQTARALPFKQEVI 179
GA+LW D+ AIPA A+ +E K I +R P + I ++ + A P E I
Sbjct: 268 EGANLWFDMLAIPADATNVENAHKLINYLLR-PEVIAPISNYVAYANPNDLAQPLVDEAI 326
>UNIPROTKB|P0AFK9 [details] [associations]
symbol:potD "putrescine / spermidine ABC transporter -
periplasmic binding protein" species:83333 "Escherichia coli K-12"
[GO:0019808 "polyamine binding" evidence=IEA] [GO:0015846
"polyamine transport" evidence=IEA;IMP] [GO:0015417
"polyamine-transporting ATPase activity" evidence=IMP]
InterPro:IPR001188 PIRSF:PIRSF019574 PRINTS:PR00909 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0042597 eggNOG:COG0687 KO:K11069 GO:GO:0019808 GO:GO:0015417
EMBL:M64519 TCDB:3.A.1.11.1 PIR:D40840 RefSeq:NP_415641.1
RefSeq:YP_489391.1 PDB:1POT PDB:1POY PDBsum:1POT PDBsum:1POY
ProteinModelPortal:P0AFK9 SMR:P0AFK9 IntAct:P0AFK9
SWISS-2DPAGE:P0AFK9 PaxDb:P0AFK9 PRIDE:P0AFK9
EnsemblBacteria:EBESCT00000003763 EnsemblBacteria:EBESCT00000015138
GeneID:12932803 GeneID:945682 KEGG:ecj:Y75_p1093 KEGG:eco:b1123
PATRIC:32117493 EchoBASE:EB0745 EcoGene:EG10752
HOGENOM:HOG000263814 OMA:VWNGSAY ProtClustDB:PRK09501
BioCyc:EcoCyc:POTD-MONOMER BioCyc:ECOL316407:JW1109-MONOMER
EvolutionaryTrace:P0AFK9 Genevestigator:P0AFK9 Uniprot:P0AFK9
Length = 348
Score = 123 (48.4 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 32/125 (25%), Positives = 58/125 (46%)
Query: 18 IEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNI-DLQVAGGKISVXXXXXX 76
+ W DLW+PE G + + + REV L+ +G S N+ + +++ A ++
Sbjct: 148 VTSWADLWKPEYKGSLLLTDDAREVFQMALRKLGYSGNTTDPKEIEAAYNELKKLMPNVA 207
Query: 77 XXXXXRLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAI 136
F+S + + G+V + + W+ A + + + VV PK G W D AI
Sbjct: 208 A------FNSDNPANPYMEGEVNLGMIWNGSAFVARQAGTPIDVVWPKEGGIFWMDSLAI 261
Query: 137 PAASR 141
PA ++
Sbjct: 262 PANAK 266
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.134 0.403 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 273 262 0.00091 114 3 11 22 0.48 33
32 0.49 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 12
No. of states in DFA: 618 (66 KB)
Total size of DFA: 206 KB (2113 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 21.62u 0.07s 21.69t Elapsed: 00:00:03
Total cpu time: 21.62u 0.07s 21.69t Elapsed: 00:00:03
Start: Sat May 11 08:33:39 2013 End: Sat May 11 08:33:42 2013