BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024049
(273 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P31133|POTF_ECOLI Putrescine-binding periplasmic protein OS=Escherichia coli (strain
K12) GN=potF PE=1 SV=3
Length = 370
Score = 67.8 bits (164), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 68/137 (49%), Gaps = 15/137 (10%)
Query: 16 APIEDWKDLWRPELAGR-----ISMVNSPREVIGSVLKYMGASYNSNNIDLQVAGGKISV 70
AP++ W + +PE + +S +++P EV +VL Y+G NS D G +
Sbjct: 155 APVDSWDLILKPENLEKLKSCGVSFLDAPEEVFATVLNYLGKDPNSTKAD-DYTGPATDL 213
Query: 71 QQNLALLANQARLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMS------NVAVVVPK 124
L L R F S+ Y+ GD+ VA+GW+ DV A R NV+ +PK
Sbjct: 214 ---LLKLRPNIRYFHSSQYINDLANGDICVAIGWAGDVWQASNRAKEAKNGVNVSFSIPK 270
Query: 125 SGASLWADLWAIPAASR 141
GA + D++A+PA ++
Sbjct: 271 EGAMAFFDVFAMPADAK 287
>sp|P44731|POTD2_HAEIN Spermidine/putrescine-binding periplasmic protein 2 OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=potD-A PE=3 SV=2
Length = 350
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 71/155 (45%), Gaps = 19/155 (12%)
Query: 18 IEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNN-IDLQVAGGKISVQQNLAL 76
I W DLW+PE G++ M + REV L G S N+ N D++ A ++ L
Sbjct: 151 ITSWADLWKPEFKGKVLMTSDAREVFHVALLLDGKSPNTTNEEDIKTAYERLE-----KL 205
Query: 77 LANQARLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAI 136
L N A F+S + G+V + + W+ A K ++ V PK GA W D +AI
Sbjct: 206 LPNVAT-FNSDSPEVPYVQGEVAIGMIWNGSAYLAQKENQSLQFVYPKEGAIFWMDNYAI 264
Query: 137 PAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARA 171
P ++ V G H++I+F L+ A
Sbjct: 265 PTTAK--------NVEGA----HKFIDFLLRPENA 287
>sp|P45168|POTD1_HAEIN Spermidine/putrescine-binding periplasmic protein 1 OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=potD-B PE=3 SV=1
Length = 360
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 84/191 (43%), Gaps = 15/191 (7%)
Query: 3 IAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNIDLQ 62
IA+ + ++ W DLW+PE A ++ +++ REV L +G N+ +
Sbjct: 148 IAFNTNTYKGEQFT---SWADLWKPEFANKVQLLDDAREVFNIALLKIGQDPNTQD---- 200
Query: 63 VAGGKISVQQNLALLANQARLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVV 122
A K + ++ L L N F+S + +F G+V V W+ V A K + + +V
Sbjct: 201 PAIIKQAYEELLKLRPN-VLSFNSDNPANSFISGEVEVGQLWNGSVRIAKKEKAPLNMVF 259
Query: 123 PKSGASLWADLWAIPA-------ASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFK 175
PK G LW D AIPA A +L +G + L + ++ +ALP +
Sbjct: 260 PKEGPVLWVDTLAIPATAKNSEGAHKLINYMLGKKTAEKLTLAIGYPTSNIEAKKALPKE 319
Query: 176 QEVIPGASPSA 186
P PSA
Sbjct: 320 ITEDPAIYPSA 330
>sp|P0AFL0|POTD_SHIFL Spermidine/putrescine-binding periplasmic protein OS=Shigella
flexneri GN=potD PE=3 SV=1
Length = 348
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 62/125 (49%), Gaps = 7/125 (5%)
Query: 18 IEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNN-IDLQVAGGKISVQQNLAL 76
+ W DLW+PE G + + + REV L+ +G S N+ + +++ A ++ L
Sbjct: 148 VTSWADLWKPEYKGSLLLTDDAREVFQMALRKLGYSGNTTDPKEIEAAYNELK-----KL 202
Query: 77 LANQARLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAI 136
+ N A F+S + + G+V + + W+ A + + + VV PK G W D AI
Sbjct: 203 MPNVA-AFNSDNPANPYMEGEVNLGMIWNGSAFVARQAGTPIDVVWPKEGGIFWMDSLAI 261
Query: 137 PAASR 141
PA ++
Sbjct: 262 PANAK 266
>sp|P0AFK9|POTD_ECOLI Spermidine/putrescine-binding periplasmic protein OS=Escherichia
coli (strain K12) GN=potD PE=1 SV=1
Length = 348
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 62/125 (49%), Gaps = 7/125 (5%)
Query: 18 IEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNN-IDLQVAGGKISVQQNLAL 76
+ W DLW+PE G + + + REV L+ +G S N+ + +++ A ++ L
Sbjct: 148 VTSWADLWKPEYKGSLLLTDDAREVFQMALRKLGYSGNTTDPKEIEAAYNELK-----KL 202
Query: 77 LANQARLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAI 136
+ N A F+S + + G+V + + W+ A + + + VV PK G W D AI
Sbjct: 203 MPNVA-AFNSDNPANPYMEGEVNLGMIWNGSAFVARQAGTPIDVVWPKEGGIFWMDSLAI 261
Query: 137 PAASR 141
PA ++
Sbjct: 262 PANAK 266
>sp|P0A2C7|POTD_SALTY Spermidine/putrescine-binding periplasmic protein OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=potD PE=3 SV=1
Length = 348
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 7/125 (5%)
Query: 18 IEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNN-IDLQVAGGKISVQQNLAL 76
I W DLW+PE + + + REV L+ +G S N+ + +++ A + L
Sbjct: 148 ITSWADLWKPEYKNSLLLTDDAREVFQMALRKLGYSGNTTDPKEIEAA------YEELKK 201
Query: 77 LANQARLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAI 136
L F+S + + G+V + + W+ A + + + VV PK G W D AI
Sbjct: 202 LMPNVAAFNSDNPANPYMEGEVNLGMVWNGSAFVARQAGTPLEVVWPKEGGIFWMDSLAI 261
Query: 137 PAASR 141
PA ++
Sbjct: 262 PANAK 266
>sp|P0A2C8|POTD_SALTI Spermidine/putrescine-binding periplasmic protein OS=Salmonella
typhi GN=potD PE=3 SV=1
Length = 348
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 7/125 (5%)
Query: 18 IEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNN-IDLQVAGGKISVQQNLAL 76
I W DLW+PE + + + REV L+ +G S N+ + +++ A + L
Sbjct: 148 ITSWADLWKPEYKNSLLLTDDAREVFQMALRKLGYSGNTTDPKEIEAA------YEELKK 201
Query: 77 LANQARLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAI 136
L F+S + + G+V + + W+ A + + + VV PK G W D AI
Sbjct: 202 LMPNVAAFNSDNPANPYMEGEVNLGMVWNGSAFVARQAGTPLEVVWPKEGGIFWMDSLAI 261
Query: 137 PAASR 141
PA ++
Sbjct: 262 PANAK 266
>sp|P87024|SKN1_CANAX Beta-glucan synthesis-associated protein SKN1 OS=Candida albicans
GN=SKN1 PE=2 SV=1
Length = 737
Score = 33.5 bits (75), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 23/51 (45%)
Query: 93 FGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLE 143
FGI + W + W S V P+ R+ V V PK ++ D P ++
Sbjct: 658 FGISNNWAYIDWPSLVFPSTMRVDYVRVYQPKDQINVGCDPTDFPTYDYIQ 708
>sp|P0CO18|SWR1_CRYNJ Helicase SWR1 OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=SWR1 PE=3 SV=1
Length = 1246
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 69 SVQQNLALLANQARLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGAS 128
+V++N+ A Q RL D + D W VGW D+ V +++V+ VV KSG
Sbjct: 1066 TVEENMLRKAEQKRLLDKMVIQEGGFNNDWWGRVGW-KDMFGDVPGITDVSGVVEKSGEG 1124
Query: 129 L 129
+
Sbjct: 1125 I 1125
>sp|P0CO19|SWR1_CRYNB Helicase SWR1 OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=SWR1 PE=3 SV=1
Length = 1246
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 69 SVQQNLALLANQARLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGAS 128
+V++N+ A Q RL D + D W VGW D+ V +++V+ VV KSG
Sbjct: 1066 TVEENMLRKAEQKRLLDKMVIQEGGFNNDWWGRVGW-KDMFGDVPGITDVSGVVEKSGEG 1124
Query: 129 L 129
+
Sbjct: 1125 I 1125
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,346,382
Number of Sequences: 539616
Number of extensions: 4038787
Number of successful extensions: 9527
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 9510
Number of HSP's gapped (non-prelim): 13
length of query: 273
length of database: 191,569,459
effective HSP length: 116
effective length of query: 157
effective length of database: 128,974,003
effective search space: 20248918471
effective search space used: 20248918471
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)