Query 024049
Match_columns 273
No_of_seqs 224 out of 1766
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 17:18:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024049.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024049hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gl0_A LMO0810 protein; struct 100.0 7.7E-39 2.6E-43 292.5 20.9 214 1-245 117-330 (333)
2 4eqb_A Spermidine/putrescine A 100.0 6.3E-35 2.2E-39 265.6 21.0 213 1-245 115-327 (330)
3 3ttm_A Polyamine transport pro 100.0 3E-34 1E-38 262.2 18.6 217 1-245 116-345 (346)
4 3ttn_A Polyamine transport pro 100.0 2.4E-33 8.3E-38 254.9 18.3 216 1-244 113-340 (340)
5 1pot_A POTD, spermidine/putres 100.0 1.8E-31 6E-36 242.1 20.9 214 1-246 111-324 (325)
6 1a99_A POTF, putrescine-bindin 100.0 4.9E-28 1.7E-32 220.8 16.6 217 1-245 112-342 (344)
7 2v84_A Spermidine/putrescine A 100.0 3.9E-27 1.3E-31 215.7 19.1 206 1-245 132-342 (343)
8 4i1d_A ABC transporter substra 99.9 4.3E-27 1.5E-31 212.8 17.8 208 1-244 107-322 (324)
9 4euo_A ABC transporter, substr 99.9 1.9E-27 6.7E-32 215.5 13.3 208 1-246 103-314 (320)
10 3rpw_A ABC transporter; struct 99.9 5.7E-26 2E-30 208.9 17.5 209 1-244 141-363 (365)
11 3pu5_A Extracellular solute-bi 99.9 1.9E-24 6.4E-29 196.1 10.0 200 1-246 113-325 (333)
12 4edp_A ABC transporter, substr 99.9 6.3E-21 2.1E-25 172.6 16.3 201 2-243 142-349 (351)
13 3c9h_A ABC transporter, substr 99.8 9.4E-20 3.2E-24 167.3 14.4 154 1-181 137-299 (355)
14 2qry_A Thiamine-binding peripl 99.8 8.1E-20 2.8E-24 166.1 11.7 166 1-199 128-297 (330)
15 3e13_X Putative iron-uptake AB 99.8 1.9E-18 6.6E-23 154.9 14.9 165 1-200 104-287 (322)
16 2voz_A FUTA2, periplasmic iron 99.8 1.9E-18 6.5E-23 157.1 12.6 169 1-200 131-315 (346)
17 1q35_A Iron binding protein FB 99.8 3.7E-18 1.3E-22 153.6 13.3 169 2-200 104-283 (320)
18 1xvx_A YFUA; periplasmic iron 99.7 3.9E-17 1.3E-21 146.5 16.4 148 1-176 106-264 (312)
19 2pt1_A Iron transport protein; 99.7 8.5E-18 2.9E-22 152.2 11.9 196 2-243 122-331 (334)
20 1y9u_A Putative iron binding p 99.7 6.5E-17 2.2E-21 145.5 14.8 162 1-200 107-291 (323)
21 1nnf_A Iron-utilization peripl 99.7 7E-17 2.4E-21 144.4 13.7 147 2-176 104-260 (309)
22 1sbp_A Sulfate-binding protein 99.6 6.3E-16 2.2E-20 138.3 9.8 150 1-185 97-264 (310)
23 3cg1_A UPF0100 protein PF0080; 99.6 1.6E-15 5.3E-20 136.0 10.3 150 1-176 92-290 (296)
24 3uor_A ABC transporter sugar b 99.6 9.8E-15 3.3E-19 138.5 15.2 239 1-264 145-415 (458)
25 3k01_A Acarbose/maltose bindin 99.6 6.4E-15 2.2E-19 137.1 13.6 238 1-264 143-410 (412)
26 3quf_A Extracellular solute-bi 99.6 1.6E-14 5.6E-19 134.3 12.0 232 2-261 140-411 (414)
27 2gha_A Maltose ABC transporter 99.5 9.1E-14 3.1E-18 128.2 15.7 167 1-184 111-304 (382)
28 2zyo_A Solute-binding protein; 99.5 5E-13 1.7E-17 123.7 20.5 234 1-263 131-393 (397)
29 4dxb_A RG13, maltose-binding p 99.5 5.6E-14 1.9E-18 139.5 13.3 161 1-185 113-303 (637)
30 1elj_A Maltodextrin-binding pr 99.5 1.2E-12 4.2E-17 120.5 18.9 167 1-185 118-307 (381)
31 4hw8_A Bacterial extracellular 99.5 1.7E-12 5.7E-17 121.2 18.3 230 1-265 151-410 (420)
32 1urs_A Maltose-binding protein 99.5 3.7E-13 1.3E-17 124.9 13.0 165 1-184 143-327 (402)
33 2xz3_A Maltose ABC transporter 99.5 6E-13 2E-17 127.1 14.5 167 1-184 114-303 (463)
34 2vgq_A Maltose-binding peripla 99.4 1.1E-12 3.9E-17 125.3 15.5 167 1-184 128-317 (477)
35 1y4c_A Maltose binding protein 99.4 7E-13 2.4E-17 128.1 13.6 167 1-184 113-302 (494)
36 3mq9_A Bone marrow stromal ant 99.4 1.9E-12 6.5E-17 123.8 16.2 233 1-268 127-392 (471)
37 2gh9_A Maltose/maltodextrin-bi 99.4 6.8E-12 2.3E-16 115.7 19.4 165 1-182 115-306 (386)
38 2b3f_A Glucose-binding protein 99.4 2.7E-12 9.1E-17 119.2 16.6 165 1-184 122-317 (400)
39 3oai_A Maltose-binding peripla 99.4 1.3E-12 4.6E-17 124.3 13.7 231 1-266 113-376 (507)
40 3n94_A Fusion protein of malto 99.4 2.4E-12 8.1E-17 122.7 15.2 230 1-265 115-377 (475)
41 4hs7_A Bacterial extracellular 99.4 1.7E-11 5.8E-16 114.3 20.6 166 1-183 151-341 (420)
42 1mh3_A Maltose binding-A1 home 99.4 1.3E-12 4.4E-17 122.0 12.9 166 1-183 113-301 (421)
43 3oo8_A ABC transporter binding 99.4 1E-12 3.4E-17 122.2 12.1 166 2-185 143-342 (415)
44 3cij_A UPF0100 protein AF_0094 99.4 8.7E-13 3E-17 118.2 11.1 145 1-176 87-289 (295)
45 3cfx_A UPF0100 protein MA_0280 99.4 1.1E-12 3.8E-17 117.7 11.7 145 1-176 87-290 (296)
46 1hsj_A Fusion protein consisti 99.4 1.8E-12 6.1E-17 123.8 13.7 166 1-183 113-301 (487)
47 3ob4_A Conglutin, maltose ABC 99.4 2.9E-12 9.9E-17 123.4 15.2 163 1-185 113-303 (500)
48 3iot_A Maltose-binding protein 99.4 2.2E-12 7.5E-17 122.0 13.7 227 1-262 113-372 (449)
49 3csg_A MBP, maltose-binding pr 99.4 1.3E-12 4.6E-17 123.9 12.0 166 1-183 111-299 (461)
50 2xd3_A MALX, maltose/maltodext 99.4 2.2E-12 7.5E-17 120.4 12.8 161 1-184 143-339 (416)
51 3osr_A Maltose-binding peripla 99.4 1.6E-12 5.6E-17 129.6 12.2 163 1-185 149-339 (653)
52 3h4z_A Maltose-binding peripla 99.4 4.5E-12 1.5E-16 124.3 14.5 163 1-185 113-303 (568)
53 3py7_A Maltose-binding peripla 99.4 4.7E-12 1.6E-16 122.4 14.4 225 1-261 114-372 (523)
54 3h3g_A Fusion protein of malto 99.4 3.3E-12 1.1E-16 124.0 12.8 163 1-185 115-305 (539)
55 2heu_A Sugar ABC transporter, 99.4 1.7E-12 6E-17 120.5 10.3 164 2-184 130-333 (401)
56 1r6z_P Chimera of maltose-bind 99.3 7E-12 2.4E-16 120.7 13.2 166 1-183 114-302 (509)
57 2zxt_A Maltose-binding peripla 99.3 2.8E-12 9.5E-17 122.5 10.1 166 1-183 113-301 (465)
58 3r26_A Molybdate-binding perip 99.3 1.1E-11 3.7E-16 108.1 12.4 134 1-176 89-231 (237)
59 3f5f_A Maltose-binding peripla 99.3 2.9E-11 9.9E-16 120.2 16.4 167 1-185 113-303 (658)
60 3o3u_N Maltose-binding peripla 99.3 3E-11 1E-15 116.7 15.6 163 1-185 113-303 (581)
61 2hxw_A Major antigenic peptide 99.3 5.2E-12 1.8E-16 108.6 9.0 134 2-176 84-226 (237)
62 3mp6_A MBP, SGF29, maltose-bin 99.3 1.4E-11 4.7E-16 119.3 13.0 163 1-185 114-304 (522)
63 3osq_A Maltose-binding peripla 99.3 1.7E-11 5.7E-16 122.5 13.6 171 67-263 470-655 (661)
64 1eu8_A Trehalose/maltose bindi 99.3 7.2E-11 2.5E-15 109.5 16.3 164 1-176 124-326 (409)
65 3i3v_A Probable secreted solut 99.3 1.4E-12 4.8E-17 120.8 4.6 161 2-181 127-325 (405)
66 4b3n_A Maltose-binding peripla 99.2 2.8E-11 9.7E-16 119.2 11.8 155 1-176 127-309 (602)
67 3thi_A Protein (thiaminase I); 99.2 7.3E-11 2.5E-15 107.8 13.2 153 2-175 108-296 (371)
68 3cfz_A UPF0100 protein MJ1186; 99.2 1.6E-10 5.6E-15 103.3 12.5 142 1-175 87-285 (292)
69 1atg_A MODA, periplasmic molyb 99.2 8.4E-11 2.9E-15 98.9 9.9 143 2-184 83-230 (231)
70 4h1g_A Maltose binding protein 99.2 4.4E-10 1.5E-14 113.0 16.4 158 1-176 114-296 (715)
71 4exk_A Maltose-binding peripla 99.2 5.6E-10 1.9E-14 107.4 16.3 154 1-176 117-299 (487)
72 2uvj_A TOGB, ABC type periplas 99.2 9.9E-10 3.4E-14 101.8 17.3 160 2-174 122-316 (408)
73 2z8f_A Galacto-N-biose/lacto-N 99.1 1.4E-10 4.8E-15 107.9 10.7 159 2-173 133-320 (412)
74 4aq4_A SN-glycerol-3-phosphate 99.1 1.6E-09 5.6E-14 99.8 17.7 235 2-265 128-413 (419)
75 2nvu_B Maltose binding protein 99.1 1.9E-10 6.5E-15 117.0 12.1 158 1-176 117-299 (805)
76 2w7y_A FCSSBP, probable sugar 99.1 1.4E-10 4.9E-15 108.3 9.4 161 2-182 160-348 (430)
77 4g68_A ABC transporter; transp 99.1 3.6E-10 1.2E-14 106.7 11.6 157 2-176 180-377 (456)
78 3gzg_A Molybdate-binding perip 99.1 5.2E-10 1.8E-14 98.9 10.5 132 1-176 105-247 (253)
79 3dm0_A Maltose-binding peripla 98.9 9.5E-09 3.2E-13 101.3 15.0 153 1-176 113-295 (694)
80 3omb_A Extracellular solute-bi 98.9 4.9E-10 1.7E-14 108.1 4.3 162 1-175 165-383 (535)
81 4gqo_A LMO0859 protein; virule 98.9 7.5E-09 2.6E-13 96.3 10.0 168 1-182 149-353 (433)
82 3a09_A ALGQ1; sugar binding pr 98.8 5.4E-08 1.8E-12 91.7 13.4 162 2-175 138-346 (490)
83 3vlv_A ALGQ1; sugar binding pr 98.7 4.7E-08 1.6E-12 93.6 10.5 162 2-175 138-346 (502)
84 3k6v_A Solute-binding protein 98.4 1.7E-06 5.7E-11 80.2 12.4 77 87-182 230-332 (354)
85 3muq_A Uncharacterized conserv 95.8 0.021 7.2E-07 49.6 7.1 65 102-175 169-233 (237)
86 3lr1_A Tungstate ABC transport 92.7 0.21 7.1E-06 43.3 6.4 66 102-175 169-234 (236)
87 4gd5_A Phosphate ABC transport 90.9 0.25 8.6E-06 42.9 5.0 39 129-181 237-275 (279)
88 3kn3_A Putative periplasmic pr 90.6 0.67 2.3E-05 40.2 7.4 66 102-175 170-238 (242)
89 4h1x_A PBP 2, phosphate-bindin 78.2 2.2 7.5E-05 37.2 4.6 40 128-182 101-140 (265)
90 3cvg_A Putative metal binding 73.7 3.5 0.00012 35.9 4.7 38 127-176 232-270 (294)
91 1ii5_A SLR1257 protein; membra 64.7 23 0.0008 28.0 7.7 79 83-175 140-222 (233)
92 4ecf_A ABC-type phosphate tran 61.1 9.4 0.00032 32.7 4.7 26 157-183 219-244 (264)
93 1twy_A ABC transporter, peripl 56.1 39 0.0013 27.7 7.8 76 87-183 188-275 (290)
94 4exl_A PBP 1, phosphate-bindin 54.6 14 0.00047 31.6 4.7 25 157-182 219-243 (265)
95 1pc3_A Phosphate-binding prote 47.4 44 0.0015 29.8 7.0 17 157-174 307-323 (350)
96 3uif_A Sulfonate ABC transport 44.5 72 0.0025 27.6 8.0 120 1-167 101-227 (348)
97 3c5t_B Exendin-4, exenatide; l 41.7 15 0.00052 21.3 1.9 13 156-168 9-21 (31)
98 2pyy_A Ionotropic glutamate re 41.4 38 0.0013 26.5 5.2 75 87-175 141-218 (228)
99 4ef1_A Pheromone COB1/lipoprot 40.9 26 0.00089 30.2 4.2 78 85-178 157-237 (246)
100 3kbr_A Cyclohexadienyl dehydra 38.3 47 0.0016 26.4 5.3 52 87-138 156-207 (239)
101 1zbm_A Hypothetical protein AF 38.2 54 0.0018 27.4 5.9 66 87-167 134-206 (280)
102 4f3p_A Glutamine-binding perip 34.6 83 0.0028 25.2 6.3 53 87-141 161-215 (249)
103 2x26_A Periplasmic aliphatic s 34.6 36 0.0012 28.8 4.2 68 87-167 142-211 (308)
104 1t5q_A Gastric inhibitory poly 34.5 19 0.00066 20.7 1.6 11 157-167 18-28 (30)
105 4got_A Methionine-binding lipo 33.7 31 0.001 29.8 3.5 78 86-178 160-240 (249)
106 2l63_A GLP-2, glucagon-like pe 32.8 22 0.00076 20.9 1.7 12 157-168 18-29 (33)
107 1xs5_A 29 kDa protein, membran 32.2 57 0.0019 27.5 5.0 74 86-177 155-231 (241)
108 2yln_A Putative ABC transporte 30.5 95 0.0032 25.8 6.2 53 87-139 193-247 (283)
109 1ixh_A Phosphate-binding prote 29.7 37 0.0013 29.7 3.4 24 156-182 271-294 (321)
110 1p99_A Hypothetical protein PG 29.5 45 0.0015 29.1 4.0 78 87-178 192-272 (295)
111 3ksx_A Nitrate transport prote 29.4 55 0.0019 28.0 4.5 68 87-167 168-237 (324)
112 4i62_A Amino acid ABC transpor 29.3 77 0.0026 25.5 5.3 53 87-139 181-234 (269)
113 1jrj_A Exendin-4; Trp-CAGE, GL 29.1 27 0.00093 21.4 1.7 12 157-168 18-29 (39)
114 2g49_C Glucagon preproprotein; 29.1 27 0.00093 19.9 1.6 11 157-167 18-28 (29)
115 3k4u_A Binding component of AB 28.7 93 0.0032 24.8 5.6 51 87-139 146-198 (245)
116 2yjp_A Putative ABC transporte 28.1 1E+02 0.0036 25.6 6.0 51 87-139 195-246 (291)
117 2pvu_A ARTJ; basic amino acid 28.0 1.7E+02 0.0059 23.7 7.3 53 87-139 179-233 (272)
118 3qsl_A Putative exported prote 27.8 59 0.002 27.6 4.4 68 87-167 177-255 (346)
119 3qax_A Probable ABC transporte 27.8 99 0.0034 24.8 5.7 53 87-139 169-223 (268)
120 3h7m_A Sensor protein; histidi 27.5 1.4E+02 0.0047 23.2 6.4 51 87-139 148-200 (234)
121 3iol_B Glucagon; receptor-liga 27.4 35 0.0012 19.7 1.9 12 156-167 17-28 (31)
122 3del_B Arginine binding protei 27.3 1E+02 0.0036 24.3 5.7 53 87-139 148-202 (242)
123 2b4n_A Gastric inhibitory poly 25.6 36 0.0012 21.1 1.8 14 156-169 17-30 (42)
124 4esw_A Pyrimidine biosynthesis 24.5 49 0.0017 28.8 3.3 39 83-121 44-83 (342)
125 3p7i_A PHND, subunit of alkylp 24.4 1.6E+02 0.0055 25.5 6.7 56 87-142 57-114 (321)
126 2a5s_A N-methyl-D-aspartate re 24.0 2E+02 0.0067 23.9 7.0 55 87-142 196-253 (284)
127 3mpk_A Virulence sensor protei 23.1 3E+02 0.01 22.2 8.3 56 83-139 165-223 (267)
128 1wdn_A GLNBP, glutamine bindin 22.7 1.2E+02 0.004 23.4 5.0 51 87-139 140-192 (226)
129 3tql_A Arginine-binding protei 22.6 1.3E+02 0.0045 23.1 5.3 53 87-139 141-198 (227)
130 2y7i_A STM4351; arginine-bindi 22.3 1.3E+02 0.0045 23.3 5.3 35 87-121 143-177 (229)
131 2qpq_A Protein BUG27; alpha/be 22.1 3.7E+02 0.013 23.0 8.9 78 87-175 166-264 (301)
132 3un6_A Hypothetical protein sa 21.4 1.2E+02 0.004 26.2 5.1 37 87-123 93-129 (341)
133 2czl_A Hypothetical protein TT 21.4 90 0.0031 25.8 4.3 69 87-168 127-200 (272)
134 2v3u_A Glutamate receptor delt 21.3 3.1E+02 0.011 21.7 12.7 57 83-142 173-232 (265)
135 2rc8_A Glutamate [NMDA] recept 20.6 1.7E+02 0.0059 24.3 6.0 55 87-141 205-261 (294)
136 3un6_A Hypothetical protein sa 20.4 92 0.0031 26.9 4.2 70 86-167 191-263 (341)
137 3n5l_A Binding protein compone 20.2 1.4E+02 0.0047 25.7 5.3 56 87-142 47-104 (310)
No 1
>4gl0_A LMO0810 protein; structural genomics, IDP05673, spermidine, putrescine, ABC transporter, niaid; HET: MSE PGE PG4; 1.92A {Listeria monocytogenes}
Probab=100.00 E-value=7.7e-39 Score=292.51 Aligned_cols=214 Identities=24% Similarity=0.383 Sum_probs=194.9
Q ss_pred CEEEEeCccccccCCCCCCChHHhcCcccCCcEEeeCChHHHHHHHHHHhCCCCCCCChhhhhhchHHHHHHHHHHHhcc
Q 024049 1 MVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNIDLQVAGGKISVQQNLALLANQ 80 (273)
Q Consensus 1 ~gi~YN~~~v~~~g~~~p~SW~dL~dp~~kGki~~~d~~~~~~~~al~~~G~~~~~~~~~~~~~~~~~~~~~~L~~l~~~ 80 (273)
+||+||+++|++ .+|+||++||+|+++|++++.+++++.+++++.++|.+.++.+++ .+.++...+..++++
T Consensus 117 ~~i~yn~~~~~~---~~~~sw~dl~dp~~kg~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 188 (333)
T 4gl0_A 117 LGIIYNKEMFPD---KNFDTWNALFDPELKNQILLIDGAREVMGLGLNSLGYSLNDTNKA-----HLQAARDKLETMTPN 188 (333)
T ss_dssp EEEEEETTTCTT---CCTTSGGGGGCGGGTTCEEEESCHHHHHHHHHHHTTCCTTCCCHH-----HHHHHHHHHHHHGGG
T ss_pred eeeeechhhccc---CCcccHHhhcCHHhhhccccCCcHHHHHHHHHHHHhhcccCCCHH-----HHHHHHHHHHhhccc
Confidence 489999999986 478999999999999999999999999999999999998887765 367888899999999
Q ss_pred cccccchhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEEecCCCceeeeeeEEEecCCCCcccccCCCCCCChHHHHH
Q 024049 81 ARLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPSPLIHQ 160 (273)
Q Consensus 81 v~~~~~~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~ 160 (273)
+..+++++..+.|.+||++|+++|+++...++.++.++.+++|+||+.+|+|+++|+|+|+|++ +|++
T Consensus 189 ~~~~~~~~~~~~~~~Ge~~~~~~~~~~~~~~~~~~~~~~~~~p~eG~~~~~~~~~I~k~a~n~e------------~A~~ 256 (333)
T 4gl0_A 189 VKAIVGDEIKLLMADNEAGVAVTFSGEAAEMLSENEDLEYVIPKDGSNLWFDNMVIPKTAKNVD------------GAHK 256 (333)
T ss_dssp EEEEESTTHHHHTSCC-CCEEEEEHHHHHHHHHHCTTEEEECCSSCEEEEEEEEECBTTCSCHH------------HHHH
T ss_pred cceecchhhhhhhhccchheehhhhHHHHHHHhhccccccccCCCCCccccceEEEEcCCCCHH------------HHHH
Confidence 8888888899999999999999999999999999999999999999999999999999999998 9999
Q ss_pred HHHHHhcHHHhchhhhhhcCCCCCChhhhhccCCChHHhcCCCCCCCCcccCCCCHHHHhhceeccCCCHHHHHHHHHHH
Q 024049 161 WIEFCLQTARALPFKQEVIPGASPSALETTLVKLPEELLKGKPSQDTNLIVGVPPAEILARCEFLEPLSEATLSDYEWLV 240 (273)
Q Consensus 161 FInfllspe~q~~~~~~~~~~~~p~~~~~a~~~l~~e~~~~~~~~~~~l~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~W 240 (273)
|||||+|||+|+.+++ .++|++|| ..+...+|+++++++ .++|+.+.+++++++.+++++..++|+++|
T Consensus 257 fi~fllspe~q~~~~~-~~gy~~~n--~~a~~~l~~~~~~~~--------~~~p~~~~~~~~~~~~~~~~~~~~~~~~~w 325 (333)
T 4gl0_A 257 FINFMLKPENAAINAE-YVGYATPN--AKAVELLPKEISSDE--------RFYPDMDELNNLEVYDNLGKRMLSYYNELF 325 (333)
T ss_dssp HHHHHHSHHHHHHHHH-HHCCBCCB--HHHHHHSCHHHHTCT--------TTSCCGGGGTTEECCCCCCHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHH-HhCCCCcc--HHHHHhCCHHHHhCc--------ccCCCHHHHhhCeehhcCCHHHHHHHHHHH
Confidence 9999999999999995 56888777 577888999998864 358999999999999999999999999999
Q ss_pred HHhhC
Q 024049 241 ADLQK 245 (273)
Q Consensus 241 ~~ik~ 245 (273)
++||.
T Consensus 326 ~~~K~ 330 (333)
T 4gl0_A 326 LEFKM 330 (333)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99984
No 2
>4eqb_A Spermidine/putrescine ABC superfamily ATP binding transporter, binding protein; structural genomics, niaid; HET: EPE; 1.50A {Streptococcus pneumoniae TCH8431}
Probab=100.00 E-value=6.3e-35 Score=265.63 Aligned_cols=213 Identities=23% Similarity=0.339 Sum_probs=193.9
Q ss_pred CEEEEeCccccccCCCCCCChHHhcCcccCCcEEeeCChHHHHHHHHHHhCCCCCCCChhhhhhchHHHHHHHHHHHhcc
Q 024049 1 MVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNIDLQVAGGKISVQQNLALLANQ 80 (273)
Q Consensus 1 ~gi~YN~~~v~~~g~~~p~SW~dL~dp~~kGki~~~d~~~~~~~~al~~~G~~~~~~~~~~~~~~~~~~~~~~L~~l~~~ 80 (273)
++|+||+++|++ +|+||++|++++++|++++.+.+++.++.++.+.|.+.++.+++ ++.++.+.|.+++++
T Consensus 115 ~~l~Ynkd~~~~----~p~tw~el~~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~-----~~~~a~~~l~~l~~~ 185 (330)
T 4eqb_A 115 LGIVYNETMVDE----APEHWDDLWKLEYKNSIMLFDGAREVLGLGLNSLGYSLNSKDPQ-----QLEETVDKLYKLTPN 185 (330)
T ss_dssp EEEEEEGGGCSS----CCCSGGGGGCGGGTTCEEEESCHHHHHHHHHHHTTCCTTCCCHH-----HHHHHHHHHHTTGGG
T ss_pred EEEEEEHHHcCC----CCCCHHHHhChHhcCCeEEecCHHHHHHHHHHHcCCCCCCCCHH-----HHHHHHHHHHHHhhH
Confidence 379999999975 89999999999999999999999999999999999998877765 467899999999999
Q ss_pred cccccchhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEEecCCCceeeeeeEEEecCCCCcccccCCCCCCChHHHHH
Q 024049 81 ARLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPSPLIHQ 160 (273)
Q Consensus 81 v~~~~~~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~ 160 (273)
+..|++++..+.|.+|+++|++.|++++..++.++.+++|++|++|+.+|.++++|+++++|++ +|++
T Consensus 186 ~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~P~~g~~~~~~~~~i~~~s~~~~------------~A~~ 253 (330)
T 4eqb_A 186 IKAIVADEMKGYMIQNNVAIGVTFSGEASQMLEKNENLRYVVPTEASNLWFDNMVIPKTVKNQD------------SAYA 253 (330)
T ss_dssp EEEEESTTHHHHHHTTCCSEEEEEHHHHHHHHHHCTTEEEECCTTCEEEEEEEEBCBTTCSCHH------------HHHH
T ss_pred hheeCcHHHHHHHhcCCEEEEEechHHHHHHHhhCCCeEEEeCCCccceEEEEEEEECCCCCHH------------HHHH
Confidence 8888878889999999999999999999998888999999999999999999999999999998 9999
Q ss_pred HHHHHhcHHHhchhhhhhcCCCCCChhhhhccCCChHHhcCCCCCCCCcccCCCCHHHHhhceeccCCCHHHHHHHHHHH
Q 024049 161 WIEFCLQTARALPFKQEVIPGASPSALETTLVKLPEELLKGKPSQDTNLIVGVPPAEILARCEFLEPLSEATLSDYEWLV 240 (273)
Q Consensus 161 FInfllspe~q~~~~~~~~~~~~p~~~~~a~~~l~~e~~~~~~~~~~~l~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~W 240 (273)
||+||++||+|+.+++ ..+|.+|+ ..+...+++++++++ .++|+.+.+++++++++++++..+.|+++|
T Consensus 254 fi~~l~s~e~~~~~~~-~~g~~p~~--~~a~~~l~~~~~~~~--------~~~p~~~~~~~~~~~~~~~~~~~~~~~~~w 322 (330)
T 4eqb_A 254 FINFMLKPENALQNAE-YVGYSTPN--LPAKELLPEETKEDK--------AFYPDVETMKHLEVYEKFDHKWTGKYSDLF 322 (330)
T ss_dssp HHHHHHSHHHHHHHHH-HHCCBCSB--HHHHHTSCHHHHTCT--------TTSCCHHHHHTEECCCCCCHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHH-hhCCCChh--HHHHHhCCHHHhhCc--------ccCCCHHHHhhceEecCCCHHHHHHHHHHH
Confidence 9999999999999985 55777776 467778999999865 358999999999999999988999999999
Q ss_pred HHhhC
Q 024049 241 ADLQK 245 (273)
Q Consensus 241 ~~ik~ 245 (273)
+++|+
T Consensus 323 ~~~k~ 327 (330)
T 4eqb_A 323 LQFKM 327 (330)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99985
No 3
>3ttm_A Polyamine transport protein; polyamine binding, putrescine; 2.00A {Pseudomonas aeruginosa} PDB: 3ttk_A
Probab=100.00 E-value=3e-34 Score=262.20 Aligned_cols=217 Identities=19% Similarity=0.347 Sum_probs=192.4
Q ss_pred CEEEEeCccccc-cCCC-CCCChHHhcCcccCCc-----EEeeCChHHHHHHHHHHhCCCCCCCChhhhhhchHHHHHHH
Q 024049 1 MVIAYKKSKFRK-HNLA-PIEDWKDLWRPELAGR-----ISMVNSPREVIGSVLKYMGASYNSNNIDLQVAGGKISVQQN 73 (273)
Q Consensus 1 ~gi~YN~~~v~~-~g~~-~p~SW~dL~dp~~kGk-----i~~~d~~~~~~~~al~~~G~~~~~~~~~~~~~~~~~~~~~~ 73 (273)
++|+||++++++ +|++ +|+||++|++++++|+ +++.+++...++.++.+.|.++++.+++ .+.++.+.
T Consensus 116 ~~l~Ynkd~~~~~~G~~~~p~tw~dl~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-----~~~~a~~~ 190 (346)
T 3ttm_A 116 IGIGYNPDKVKAAFGDNAPVDSWDLVFKPENIQKLKQCGVSFLDSPTEILPAALHYLGYKPDTDNPK-----ELKAAEEL 190 (346)
T ss_dssp EEEEECHHHHHHHHCTTCCTTSTHHHHSHHHHHHHTTTCEEECSCHHHHHHHHHHHTTSCTTCCCHH-----HHHHHHHH
T ss_pred EEEEEEhHHhhhhccCCCCCCcHHHHhChhhhccccCCcEEEECCHHHHHHHHHHHcCCCCCCCCHH-----HHHHHHHH
Confidence 379999999998 7887 8999999999987665 6888888889999999999988877765 46789999
Q ss_pred HHHHhcccccccchhHHHHhhcCcEEEEEeccccHHHHHh------cCCCcEEEecCCCceeeeeeEEEecCCCCccccc
Q 024049 74 LALLANQARLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVK------RMSNVAVVVPKSGASLWADLWAIPAASRLETKQI 147 (273)
Q Consensus 74 L~~l~~~v~~~~~~~~~~~~~~Gev~va~~~s~~~~~~~~------~~~~v~~~~P~eG~~~~~d~~~I~k~a~~~~~~~ 147 (273)
|.++++++..|.+++..+.|.+|++++++.|++++..++. .+.++.+++|++|+.+|.++++|+++|+|++
T Consensus 191 l~~l~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~g~~~~~~~~~I~~~s~~~~--- 267 (346)
T 3ttm_A 191 FLKIRPYVTYFHSSKYISDLANGNICVAIGYSGDIYQAKSRAEEAKNKVTVKYNIPKEGAGSFFDMVAIPKDAENTE--- 267 (346)
T ss_dssp HHHHGGGCCEECSSTHHHHHHHTSCSEEEEEHHHHHHHHHHHHHHTSSCCCEEECCTTCEEEEEEEEECBTTCSCSH---
T ss_pred HHHHhHhhheeCChhHHHHHhcCCeEEEEeccHHHHHHHHhhhhcccCCceEEEEcCCCceEEEEEEEEECCCCCHH---
Confidence 9999999988887788999999999999999999887654 3789999999999999999999999999998
Q ss_pred CCCCCCChHHHHHHHHHHhcHHHhchhhhhhcCCCCCChhhhhccCCChHHhcCCCCCCCCcccCCCCHHHHhhceeccC
Q 024049 148 GGRVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALETTLVKLPEELLKGKPSQDTNLIVGVPPAEILARCEFLEP 227 (273)
Q Consensus 148 ~~~~~~~~~~A~~FInfllspe~q~~~~~~~~~~~~p~~~~~a~~~l~~e~~~~~~~~~~~l~~~~p~~~~l~~~~~~~~ 227 (273)
+|++||+||++||+|+.+++ ..+|.+++ ..+...+++++++++ .++|+.+.+++++++++
T Consensus 268 ---------~A~~fi~fl~s~e~q~~~~~-~~g~~p~~--~~a~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~ 327 (346)
T 3ttm_A 268 ---------GALAFVNFLMKPEIMAEITD-VVQFPNGN--AAATPLVSEAIRNDP--------GIYPSEEVMKKLYTFPD 327 (346)
T ss_dssp ---------HHHHHHHHHTSHHHHHHHHH-HHCCCBSB--TTTGGGSCHHHHTCT--------TTSCCHHHHTTEEECCC
T ss_pred ---------HHHHHHHHhcCHHHHHHHHH-hhCCCCcc--HHHHhhCCHHHhhCC--------CcCCCHHHHhhCeeecC
Confidence 99999999999999999985 45777666 467778999999865 35899999999999999
Q ss_pred CCHHHHHHHHHHHHHhhC
Q 024049 228 LSEATLSDYEWLVADLQK 245 (273)
Q Consensus 228 ~~~~~~~~~~~~W~~ik~ 245 (273)
++++.++.++++|++||+
T Consensus 328 ~~~~~~~~~~~~w~~~~~ 345 (346)
T 3ttm_A 328 LPAKTQRAMTRSWTKIKS 345 (346)
T ss_dssp CCHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhc
Confidence 998889999999999985
No 4
>3ttn_A Polyamine transport protein; polyamine binding protein, spermidine; HET: SPD; 2.00A {Pseudomonas aeruginosa} PDB: 3ttl_A*
Probab=100.00 E-value=2.4e-33 Score=254.90 Aligned_cols=216 Identities=22% Similarity=0.377 Sum_probs=190.8
Q ss_pred CEEEEeCccccc-cCCCCCCChHHhcCcccCCc-----EEeeCChHHHHHHHHHHhCCCCCCCChhhhhhchHHHHHHHH
Q 024049 1 MVIAYKKSKFRK-HNLAPIEDWKDLWRPELAGR-----ISMVNSPREVIGSVLKYMGASYNSNNIDLQVAGGKISVQQNL 74 (273)
Q Consensus 1 ~gi~YN~~~v~~-~g~~~p~SW~dL~dp~~kGk-----i~~~d~~~~~~~~al~~~G~~~~~~~~~~~~~~~~~~~~~~L 74 (273)
++|+||++++++ .|+++|+||++|++++++|+ +++.+.+...++.++.+.|.+++..+.+ +++++.+.|
T Consensus 113 ~~l~Ynkd~~~~a~G~~~P~tw~dl~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-----~~~~a~~~l 187 (340)
T 3ttn_A 113 NGIGYNVAKVKEVLGDQPIDSWAILFEPENMKKLAKCGVAFMDSGDEMLPAALNYLGLDPNTHDPK-----DYKKAEEVL 187 (340)
T ss_dssp EEEEEEHHHHHHHHCSCCCCSTHHHHCHHHHHHHGGGCEEECSCHHHHHHHHHHHTTSCTTCCCHH-----HHHHHHHHH
T ss_pred eEEEEehHHhccccCCCCCccHHHHhChhhhccccCCeEEEECCHHHHHHHHHHHcCCCCCCCCHH-----HHHHHHHHH
Confidence 379999999998 58889999999999987765 6888888888888999999988877665 467899999
Q ss_pred HHHhcccccccchhHHHHhhcCcEEEEEeccccHHHHHh------cCCCcEEEecCCCceeeeeeEEEecCCCCcccccC
Q 024049 75 ALLANQARLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVK------RMSNVAVVVPKSGASLWADLWAIPAASRLETKQIG 148 (273)
Q Consensus 75 ~~l~~~v~~~~~~~~~~~~~~Gev~va~~~s~~~~~~~~------~~~~v~~~~P~eG~~~~~d~~~I~k~a~~~~~~~~ 148 (273)
.++++++..|.+++..+.|.+|++++++.|++++...+. .+.++.+++|++|+..|.++++|+++++|++
T Consensus 188 ~~l~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~g~~~~~~~~~i~~~s~~~~---- 263 (340)
T 3ttn_A 188 TKVRPYVSYFHSSKYISDLANGNICVAFGYSGDVFQAAARAEEAGKGIDIQYVIPKEGANLWFDLMAIPADAKAAD---- 263 (340)
T ss_dssp HHHGGGCCEECSSHHHHHHHHTSCSEEEEEHHHHHHHHHHHHHHTSCCCEEEECCTTCCEEEEEEEECBTTCSCHH----
T ss_pred HHHhHHhheeCCchHHHHHhcCCeEEEEeccHHHHHHHHhhhhccCCCceEEEeCCCccceeEEEEEEECCCCCHH----
Confidence 999999888887788999999999999999999887653 3789999999999999999999999999998
Q ss_pred CCCCCChHHHHHHHHHHhcHHHhchhhhhhcCCCCCChhhhhccCCChHHhcCCCCCCCCcccCCCCHHHHhhceeccCC
Q 024049 149 GRVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALETTLVKLPEELLKGKPSQDTNLIVGVPPAEILARCEFLEPL 228 (273)
Q Consensus 149 ~~~~~~~~~A~~FInfllspe~q~~~~~~~~~~~~p~~~~~a~~~l~~e~~~~~~~~~~~l~~~~p~~~~l~~~~~~~~~ 228 (273)
+|++||+||++||+|..+++ ..+|.+++ ..+...+++++++++ .++|+.+.++++.+++++
T Consensus 264 --------~A~~fi~~l~s~e~q~~~~~-~~g~~p~~--~~a~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 324 (340)
T 3ttn_A 264 --------NAYAFIDYLLRPEVIAKVSD-YVGYANAI--PGARPLMDKSVSDSE--------EVYPPQAVLDKLYVSAVL 324 (340)
T ss_dssp --------HHHHHHHHHTSHHHHHHHHH-HHCCEESC--GGGGGGSCHHHHTBT--------TTSCCHHHHTTCEECCCC
T ss_pred --------HHHHHHHHhcCHHHHHHHHH-hcCCCCcc--HHHHhhCCHHHHhCC--------CCCCCHHHHhhcccccCC
Confidence 99999999999999999985 45776666 467778999999865 358999999999999999
Q ss_pred CHHHHHHHHHHHHHhh
Q 024049 229 SEATLSDYEWLVADLQ 244 (273)
Q Consensus 229 ~~~~~~~~~~~W~~ik 244 (273)
+++..+.++++|++||
T Consensus 325 ~~~~~~~~~~~w~~~k 340 (340)
T 3ttn_A 325 PAKVLRLQTRTWTRIK 340 (340)
T ss_dssp CHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhcC
Confidence 9988999999999986
No 5
>1pot_A POTD, spermidine/putrescine-binding protein; polyamine transport protein; HET: SPD; 1.80A {Escherichia coli} SCOP: c.94.1.1 PDB: 1poy_1*
Probab=99.98 E-value=1.8e-31 Score=242.09 Aligned_cols=214 Identities=24% Similarity=0.359 Sum_probs=184.3
Q ss_pred CEEEEeCccccccCCCCCCChHHhcCcccCCcEEeeCChHHHHHHHHHHhCCCCCCCChhhhhhchHHHHHHHHHHHhcc
Q 024049 1 MVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNIDLQVAGGKISVQQNLALLANQ 80 (273)
Q Consensus 1 ~gi~YN~~~v~~~g~~~p~SW~dL~dp~~kGki~~~d~~~~~~~~al~~~G~~~~~~~~~~~~~~~~~~~~~~L~~l~~~ 80 (273)
++|+||++++++ .||+||++|++++++|++++.+++.+.++.++...|.+.++.+.+ +..++.++|.+++++
T Consensus 111 ~~l~Ynkd~~~~---~p~~tw~dl~~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~-----~~~~a~~~l~~l~~~ 182 (325)
T 1pot_A 111 TAIGVNGDAVDP---KSVTSWADLWKPEYKGSLLLTDDAREVFQMALRKLGYSGNTTDPK-----EIEAAYNELKKLMPN 182 (325)
T ss_dssp EEEEEETTTSCT---TTCCSSGGGGSGGGTTCEEECSCHHHHHHHHHHHTTCCTTCCCHH-----HHHHHHHHHHHTGGG
T ss_pred EEEEEEHHHcCC---CCCCCHHHHcCHHhcCcEEEEcCHHHHHHHHHHHcCCCCCCCCHH-----HHHHHHHHHHHHHHH
Confidence 379999999987 367999999999999999999888778888888899887766554 357889999999988
Q ss_pred cccccchhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEEecCCCceeeeeeEEEecCCCCcccccCCCCCCChHHHHH
Q 024049 81 ARLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPSPLIHQ 160 (273)
Q Consensus 81 v~~~~~~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~ 160 (273)
+..|.+++..+.|.+|+++|+++|++.+.....++.++++++|++|..+|.++++|+++++|++ +|++
T Consensus 183 ~~~~~~~~~~~~f~~G~~~~~~~~~~~~~~~~~~~~~~~~~~P~~g~~~~~~~~~i~~~s~~~~------------~A~~ 250 (325)
T 1pot_A 183 VAAFNSDNPANPYMEGEVNLGMIWNGSAFVARQAGTPIDVVWPKEGGIFWMDSLAIPANAKNKE------------GALK 250 (325)
T ss_dssp EEEECSSCTHHHHHTTSCSEEEEEHHHHHHHHTTSCCEEEECCTTCCEEEEEEEBCBTTCTTHH------------HHHH
T ss_pred HhhcCCchHhHHHhcCCEEEEEeecHHHHHHhhcCCCeEEEECCCcceEEEEEEEEECCCCCHH------------HHHH
Confidence 7667666788999999999999999998877777889999999999999999999999999998 9999
Q ss_pred HHHHHhcHHHhchhhhhhcCCCCCChhhhhccCCChHHhcCCCCCCCCcccCCCCHHHHhhceeccCCCHHHHHHHHHHH
Q 024049 161 WIEFCLQTARALPFKQEVIPGASPSALETTLVKLPEELLKGKPSQDTNLIVGVPPAEILARCEFLEPLSEATLSDYEWLV 240 (273)
Q Consensus 161 FInfllspe~q~~~~~~~~~~~~p~~~~~a~~~l~~e~~~~~~~~~~~l~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~W 240 (273)
||+||++||.|..+++ ..+|.+++ ..+...+++++++++ .++|..+.++++.++.++++. .+++.++|
T Consensus 251 fi~~l~s~e~q~~~~~-~~g~~p~~--~~~~~~l~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~w 318 (325)
T 1pot_A 251 LINFLLRPDVAKQVAE-TIGYPTPN--LAARKLLSPEVANDK--------TLYPDAETIKNGEWQNDVGAA-SSIYEEYY 318 (325)
T ss_dssp HHHHHHSHHHHHHHHH-HHCCCCSB--STTTTTSCHHHHTCT--------TTSCCHHHHHHSEECCCCGGG-HHHHHHHH
T ss_pred HHHHHhCHHHHHHHHH-hhCCCCcc--HHHHHhcCHHHHhCc--------ccCCCHHHHhhcccccCCCHH-HHHHHHHH
Confidence 9999999999999985 45776666 456678999998754 247889999999999988766 89999999
Q ss_pred HHhhCC
Q 024049 241 ADLQKP 246 (273)
Q Consensus 241 ~~ik~~ 246 (273)
++||..
T Consensus 319 ~~~~~~ 324 (325)
T 1pot_A 319 QKLKAG 324 (325)
T ss_dssp HHHTTC
T ss_pred HHHhcc
Confidence 999964
No 6
>1a99_A POTF, putrescine-binding protein; transport, periplasmic putrescine binding protein (POTF); 2.20A {Escherichia coli} SCOP: c.94.1.1
Probab=99.95 E-value=4.9e-28 Score=220.77 Aligned_cols=217 Identities=24% Similarity=0.391 Sum_probs=179.1
Q ss_pred CEEEEeCcccccc-CCC-CCCChHHhcCcccCCcEE-----eeCChHHHHHHHHHHhCCCCCCCChhhhhhchHH-HHHH
Q 024049 1 MVIAYKKSKFRKH-NLA-PIEDWKDLWRPELAGRIS-----MVNSPREVIGSVLKYMGASYNSNNIDLQVAGGKI-SVQQ 72 (273)
Q Consensus 1 ~gi~YN~~~v~~~-g~~-~p~SW~dL~dp~~kGki~-----~~d~~~~~~~~al~~~G~~~~~~~~~~~~~~~~~-~~~~ 72 (273)
++|+||+++++++ |++ +|+||++|++++++|++. +.+.+.+.++.++.+.|.+.+..+.+ ++. ++.+
T Consensus 112 ~~l~Ynkd~~~~alGl~~~p~tw~el~~~~~~~k~~~~g~~~~~~~~~~~~~~~~~~G~~~~~~~~~-----~~~~~a~~ 186 (344)
T 1a99_A 112 TGIGYNVDKVKAVLGENAPVDSWDLILKPENLEKLKSCGVSFLDAPEEVFATVLNYLGKDPNSTKAD-----DYTGPATD 186 (344)
T ss_dssp EEEEEEHHHHHHHHCTTCCTTSTHHHHSHHHHHHHGGGCEEECSCHHHHHHHHHHHTTSCTTCCCHH-----HHHTHHHH
T ss_pred EEEEEEhHHcccccccCCCCCCHHHHcCHHhcCCcccccccccCCHHHHHHHHHHHcCCCCCCCCHH-----HHHHHHHH
Confidence 3789999999987 887 699999999987777654 56667777777777889887665554 467 7889
Q ss_pred HHHHHhcccccccchhHHHHhhcCcEEEEEeccccHHHHHh------cCCCcEEEecCCCceeeeeeEEEecCCCCcccc
Q 024049 73 NLALLANQARLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVK------RMSNVAVVVPKSGASLWADLWAIPAASRLETKQ 146 (273)
Q Consensus 73 ~L~~l~~~v~~~~~~~~~~~~~~Gev~va~~~s~~~~~~~~------~~~~v~~~~P~eG~~~~~d~~~I~k~a~~~~~~ 146 (273)
++.++++++..+.+++..+.|.+|++.|++.|++.+..+.. .+.++++++|++|...|.++++|+++++|++
T Consensus 187 ~l~~l~~~~~~~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~g~~~~~~~~~i~~~s~~~~-- 264 (344)
T 1a99_A 187 LLLKLRPNIRYFHSSQYINDLANGDICVAIGWAGDVWQASNRAKEAKNGVNVSFSIPKEGAMAFFDVFAMPADAKNKD-- 264 (344)
T ss_dssp HHHHHGGGCCEECSSTHHHHHHTTSCSEEEEEHHHHHHHHHHHHHHTCSCCEEEECCTTCEEEEEEEEECBTTCSCHH--
T ss_pred HHHHhccceeEecChhHHHHhhcCCEEEEEEccHHHHHHHHhccccCCCCceEEEECCCCceeEEEeeEEECCCCCHH--
Confidence 99999988777766678899999999999999988776654 3668999999999999999999999999988
Q ss_pred cCCCCCCChHHHHHHHHHHhcHHHhchhhhhhcCCCCCChhhhhccCCChHHhcCCCCCCCCcccCCCCHHHHhhceecc
Q 024049 147 IGGRVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALETTLVKLPEELLKGKPSQDTNLIVGVPPAEILARCEFLE 226 (273)
Q Consensus 147 ~~~~~~~~~~~A~~FInfllspe~q~~~~~~~~~~~~p~~~~~a~~~l~~e~~~~~~~~~~~l~~~~p~~~~l~~~~~~~ 226 (273)
+|++||+||++||.|..+.. ..++.+++ ..+...+++++++++ .++|..+.++++.+.+
T Consensus 265 ----------~A~~fi~~l~s~e~q~~~~~-~~g~~p~~--~~~~~~~~~~~~~~p--------~~~~~~~~~~~~~~~~ 323 (344)
T 1a99_A 265 ----------EAYQFLNYLLRPDVVAHISD-HVFYANAN--KAATPLVSAEVRENP--------GIYPPADVRAKLFTLK 323 (344)
T ss_dssp ----------HHHHHHHHHHSHHHHHHHHH-HHCCEESB--TTTGGGSCHHHHTCT--------TTSCCHHHHTTEECCC
T ss_pred ----------HHHHHHHHHcCHHHHHHHHH-hhCCCCcc--hHHHhhCCHHHhhCc--------cCCCCHHHHhhceecc
Confidence 99999999999999999885 45665555 455556899988754 2467889999999888
Q ss_pred CCCHHHHHHHHHHHHHhhC
Q 024049 227 PLSEATLSDYEWLVADLQK 245 (273)
Q Consensus 227 ~~~~~~~~~~~~~W~~ik~ 245 (273)
+++++.++.+.++|++++.
T Consensus 324 ~~~~~~~~~~~~~~~~~~~ 342 (344)
T 1a99_A 324 VQDPKIDRVRTRAWTKVKS 342 (344)
T ss_dssp CCCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhc
Confidence 8887788999999999874
No 7
>2v84_A Spermidine/putrescine ABC transporter, periplasmi binding protein; polyamine binding, SYPH spermidine, lipoprotein, transport protein; HET: MES; 1.78A {Treponema pallidum}
Probab=99.95 E-value=3.9e-27 Score=215.69 Aligned_cols=206 Identities=23% Similarity=0.304 Sum_probs=169.9
Q ss_pred CEEEEeCccccccCCCCCCChHHhcCcccCCcEEeeCChHHHHHHHHHHhCCCCCCCChhhhhhchHHHHHHHHHH-Hhc
Q 024049 1 MVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNIDLQVAGGKISVQQNLAL-LAN 79 (273)
Q Consensus 1 ~gi~YN~~~v~~~g~~~p~SW~dL~dp~~kGki~~~d~~~~~~~~al~~~G~~~~~~~~~~~~~~~~~~~~~~L~~-l~~ 79 (273)
++|+||++++++ +|+||++|++++++|++++.+.+...++.++...|.+.+..+.+ .+.++.+.|.+ +++
T Consensus 132 ~~l~YNkd~~~~----~P~Tw~el~~~~~~g~i~~~~~~~~~~~~~~~~~G~~~~~~~~~-----~~~~a~~~l~~~l~~ 202 (343)
T 2v84_A 132 AGIAVNKKAVPS----YARTWSIFSRKDLAYRMSMMDDMREVMGAALASLGYNVNTKNEQ-----ELAQAAILVTDHWKP 202 (343)
T ss_dssp CEEEEETTTCCS----CCSSGGGGGCGGGTTSEEECSCHHHHHHHHHHHTTCCTTCCCHH-----HHHHHHHHHHHHTGG
T ss_pred EEEEEEhHhcCC----CCCCHHHHhCHHHcCeEEEECChHHHHHHHHHHhCCCCCCCCHH-----HHHHHHHHHHHHHHh
Confidence 479999999986 89999999999999999998877777777788889877655543 35678889988 888
Q ss_pred ccccccchhHHHHhhcCcEEEEEeccccHHH--HHhcCCCcEEEecC-CCceeeeeeEEEecCCCCcccccCCCCCCChH
Q 024049 80 QARLFDSTHYLKAFGIGDVWVAVGWSSDVLP--AVKRMSNVAVVVPK-SGASLWADLWAIPAASRLETKQIGGRVRGPSP 156 (273)
Q Consensus 80 ~v~~~~~~~~~~~~~~Gev~va~~~s~~~~~--~~~~~~~v~~~~P~-eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~ 156 (273)
++..+..++..+.|.+|++.|++.|++.+.. ....+.++++++|. +|...|.++++|+++++|++
T Consensus 203 ~~~~~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~~~g~~~~~~~~~I~~~s~~~~------------ 270 (343)
T 2v84_A 203 NLVKFDSDGYAKSFASGDFVVAHGFAEAFFAETPEAMHEHIDFFIPQDVASPVYVDSFCIPKGARNRD------------ 270 (343)
T ss_dssp GEEEECSSSHHHHHHHTSCSEEEECHHHHHHHSCGGGGGGEEEECCTTTTCEEEEEEEBEETTCSCHH------------
T ss_pred hhheeCchHHHHHHhcCCEEEEEEecHHHHHHHHHhcCCCeeEEeeCccCcceeeeeeEEECCCCCHH------------
Confidence 7766655678899999999999999988776 55667789999999 89999999999999999988
Q ss_pred HHHHHHHHHhcHHHhchhhhhhcCCCC-CChhhhhccCCChHHhcCCCCCCCCcccCCCCHHHHhhceeccCCCHHHHHH
Q 024049 157 LIHQWIEFCLQTARALPFKQEVIPGAS-PSALETTLVKLPEELLKGKPSQDTNLIVGVPPAEILARCEFLEPLSEATLSD 235 (273)
Q Consensus 157 ~A~~FInfllspe~q~~~~~~~~~~~~-p~~~~~a~~~l~~e~~~~~~~~~~~l~~~~p~~~~l~~~~~~~~~~~~~~~~ 235 (273)
+|++||+||++||.|..+.. ..++.+ ++ ..+...++ ++ | . + +.+.++++.++.++++. ++.
T Consensus 271 aA~~Fi~~l~s~e~q~~~~~-~~g~~P~~~--~~a~~~~~----~~-----~---~-~-~~~~~~~~~~~~~~~~~-~~~ 332 (343)
T 2v84_A 271 LAHAFINFFLEPAHYAEFLD-TFGFPSTIH--REAAAYQK----KT-----P---Y-Y-SEHDLERGTLKTDVGAA-IEH 332 (343)
T ss_dssp HHHHHHHHHTSHHHHHHHHH-HHTCCCSSB--TTGGGGCC----SC-----C---S-S-CGGGGSSSEECCCCGGG-HHH
T ss_pred HHHHHHHHHcCHHHHHHHHH-hhCCCCCcc--hhHHHhcc----cc-----c---c-C-CHHHHhhceeccCCCHH-HHH
Confidence 99999999999999999985 346655 44 35555555 32 2 3 5 67889999999888764 899
Q ss_pred HHHHHHHhhC
Q 024049 236 YEWLVADLQK 245 (273)
Q Consensus 236 ~~~~W~~ik~ 245 (273)
+.++|++||+
T Consensus 333 ~~~~w~~~~~ 342 (343)
T 2v84_A 333 YNAHWNAVRF 342 (343)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999999985
No 8
>4i1d_A ABC transporter substrate-binding protein; structural genomics, PSI-biology; 2.20A {Bradyrhizobium japonicum}
Probab=99.95 E-value=4.3e-27 Score=212.83 Aligned_cols=208 Identities=14% Similarity=0.166 Sum_probs=167.2
Q ss_pred CEEEEeCccccccCCCCCCChHHhcCc-ccCCcEEeeCChHHHHHHHHHHhCCCCCCCChhhhhhchHHHHHHHHHHHhc
Q 024049 1 MVIAYKKSKFRKHNLAPIEDWKDLWRP-ELAGRISMVNSPREVIGSVLKYMGASYNSNNIDLQVAGGKISVQQNLALLAN 79 (273)
Q Consensus 1 ~gi~YN~~~v~~~g~~~p~SW~dL~dp-~~kGki~~~d~~~~~~~~al~~~G~~~~~~~~~~~~~~~~~~~~~~L~~l~~ 79 (273)
++|+||++++++ .+|+||+||+++ +++|++++.+.+...++.++.+.|.+.+..++. +++++++.|.++++
T Consensus 107 ~~l~yn~~~~~~---~~P~tw~dl~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----~~~~a~~~l~~l~~ 178 (324)
T 4i1d_A 107 SVLAYSQKTFPK---DAPNSWVDFWDVKKFPGRRALRNHPIATLEAALMADGVAPDKLYPL-----DVDRAFKKLEEIKP 178 (324)
T ss_dssp EEEEEETTTCSS---CCCCSHHHHHCTTTSCSCEEEESSSTTHHHHHHHHTTCCGGGCCSC-----CHHHHHHHHHHHGG
T ss_pred EEEEEehhhcCC---CCCCCHHHHhChhhcCCceeccCCchhHHHHHHHhcCCChhhcCHH-----HHHHHHHHHHHHhh
Confidence 479999999986 479999999999 899999999987778888888889876554433 46789999999999
Q ss_pred ccccccc--hhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEEecCCCceeeeeeEEEecCCCCcccccCCCCCCChHH
Q 024049 80 QARLFDS--THYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPSPL 157 (273)
Q Consensus 80 ~v~~~~~--~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~ 157 (273)
++..++. ++..+.|.+|++.|++.|++.+..++..|.++++++| |+..|.++++|+++++|++ +
T Consensus 179 ~~~~~~~~~~~~~~~~~~Ge~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~i~k~s~~~~------------~ 244 (324)
T 4i1d_A 179 HITVWWTSGAQSAQLLNDGEVDMEMAWNGRVSAVAKEGAKVSFTYN--QGILQSTSLCILKGAPNLE------------T 244 (324)
T ss_dssp GCSEEECSHHHHHHHHHHTSCSEEEEEHHHHHHHHHTTCSEEEEEE--EEEEEEEEEEEBTTCTTHH------------H
T ss_pred hhhhhccCcchHHHHHhCCCEEEEecccHHHHHHHhcCCCeEEEec--CeeeeccEEEEECCCCCHH------------H
Confidence 9877753 4678999999999999999999888888999999885 8999999999999999998 9
Q ss_pred HHHHHHHHhcHHHhchhhhhhcCCCCCChhhhhccC--CChHHhcCCCCCCCCcccCCC-CHHHHhhceeccCC-CHHHH
Q 024049 158 IHQWIEFCLQTARALPFKQEVIPGASPSALETTLVK--LPEELLKGKPSQDTNLIVGVP-PAEILARCEFLEPL-SEATL 233 (273)
Q Consensus 158 A~~FInfllspe~q~~~~~~~~~~~~p~~~~~a~~~--l~~e~~~~~~~~~~~l~~~~p-~~~~l~~~~~~~~~-~~~~~ 233 (273)
|++||+||+|||+|..+++ ..+|.+++ ..+... +|+++++. +| .++.++++.....- -.+.+
T Consensus 245 A~~fi~fl~s~e~q~~~~~-~~~~~p~~--~~a~~~~~~~~~~~~~-----------~~~~p~~~~~~~~~d~~~~~~~~ 310 (324)
T 4i1d_A 245 AVKFLNEAVDPVHQANLPL-HIDYGPGN--PKAFETNVIKPERAAQ-----------LPSEPANAAKQALMSYAWWSSPA 310 (324)
T ss_dssp HHHHHHHHTCHHHHHHGGG-TSSCEESS--GGGGGSSCSCHHHHTT-----------STTSHHHHTTSEECCHHHHTSHH
T ss_pred HHHHHHHHhCHHHHHHHHH-hCCCCCCC--hhhhhhcCCCHHHHhh-----------CCCChHHHhcccCCCHHHHHhcc
Confidence 9999999999999999985 45666555 355555 89998864 23 24555554433210 02456
Q ss_pred H-HHHHHHHHhh
Q 024049 234 S-DYEWLVADLQ 244 (273)
Q Consensus 234 ~-~~~~~W~~ik 244 (273)
+ .+.+.|+++.
T Consensus 311 ~~~~~~~w~~~~ 322 (324)
T 4i1d_A 311 GEAAEKRWASFM 322 (324)
T ss_dssp HHHHHHHHHHHC
T ss_pred chHHHHHHHHHH
Confidence 7 8889998874
No 9
>4euo_A ABC transporter, substrate binding protein (polya; class D of PBP, GABA-binding, transport protein; 1.28A {Agrobacterium tumefaciens} PDB: 4eq7_A
Probab=99.95 E-value=1.9e-27 Score=215.49 Aligned_cols=208 Identities=11% Similarity=0.070 Sum_probs=165.7
Q ss_pred CEEEEeCccccccCCCCCCChHHhcCc-ccCCcEEeeC-ChHHHHHHHHHHhCCCCCCCChhhhhhchHHHHHHHHHHHh
Q 024049 1 MVIAYKKSKFRKHNLAPIEDWKDLWRP-ELAGRISMVN-SPREVIGSVLKYMGASYNSNNIDLQVAGGKISVQQNLALLA 78 (273)
Q Consensus 1 ~gi~YN~~~v~~~g~~~p~SW~dL~dp-~~kGki~~~d-~~~~~~~~al~~~G~~~~~~~~~~~~~~~~~~~~~~L~~l~ 78 (273)
++|+||++++++ +|+||+||+++ +++|++++.+ +....++.++.+.|.+.+..++. ++++++++|.+++
T Consensus 103 ~~l~yn~~~~~~----~P~tw~dl~~~~~~~g~i~~~~~~~~~~~~~al~~~G~~~~~~~~~-----~~~~a~~~l~~l~ 173 (320)
T 4euo_A 103 FVIGCNVDSVSA----CPKSWADLFDTAKFPGKRTFYKWSAPGVIEAALLADGVTADKLYPL-----DLDRAFKKLDTIK 173 (320)
T ss_dssp EEEEECGGGSSC----CCCSHHHHTCTTTSCSCEEEECSSSTTHHHHHHHHTTCCGGGCCSC-----CHHHHHHHHHTTG
T ss_pred EEEEEEhhhhCC----CCCCHHHHhChhhCCCcEEEeCCCchHHHHHHHHHcCCChhhcCHH-----HHHHHHHHHHHhh
Confidence 378999999986 89999999998 4999999998 66677888888899876654433 4578899999999
Q ss_pred cccccccc-hhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEEecCCCceeeeeeEEEecCCCCcccccCCCCCCChHH
Q 024049 79 NQARLFDS-THYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPSPL 157 (273)
Q Consensus 79 ~~v~~~~~-~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~ 157 (273)
+++..+.+ ++..+.|.+|+++|++.|++++..++..|.++++++ +|+..|+++++|+++++|++ +
T Consensus 174 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~i~k~s~~~e------------~ 239 (320)
T 4euo_A 174 SDIIWWSGGAQSQQLIASAEAPFGSVWNGRMTALEQSGVKVETSW--AQNITAADSLVVPKGTKNKD------------A 239 (320)
T ss_dssp GGEEEECSHHHHHHHHHTTSSCEEEEEHHHHHHHHHTTCCCEEEE--EEEEEEEEEEECBTTCSCHH------------H
T ss_pred hceeEeCCCchHHHHHHcCCEEEEEeecHHHHHHHhCCCCeEEEe--cCceeecceEEEECCCCCHH------------H
Confidence 99865544 578899999999999999999988888899999987 79999999999999999998 9
Q ss_pred HHHHHHHHhcHHHhchhhhhhcCCCCCChhhhhccCCChHHhcCCCCCCCCcccCCCCHHHHhhceeccC-CCHHHHHHH
Q 024049 158 IHQWIEFCLQTARALPFKQEVIPGASPSALETTLVKLPEELLKGKPSQDTNLIVGVPPAEILARCEFLEP-LSEATLSDY 236 (273)
Q Consensus 158 A~~FInfllspe~q~~~~~~~~~~~~p~~~~~a~~~l~~e~~~~~~~~~~~l~~~~p~~~~l~~~~~~~~-~~~~~~~~~ 236 (273)
|++||+||+|||+|..+++ ..+|.+++ ..+...+++++++.. |.. ...++..... .-.+.++.+
T Consensus 240 A~~fi~fl~s~e~q~~~~~-~~~~~p~~--~~a~~~l~~~~~~~~-----------p~~-~~~~~~~~d~~~~~~~~~~~ 304 (320)
T 4euo_A 240 AMKFIALATSAQAQADMAT-ATGYAPVN--IESAKLMDPKIAKSL-----------PDQ-QTESQVNADMNYWAQHRDEI 304 (320)
T ss_dssp HHHHHHHHTSHHHHHHHHH-HHSCBCSB--TTSGGGSCHHHHTTS-----------GGG-CCTTEEECCHHHHHHTHHHH
T ss_pred HHHHHHHHhCHHHHHHHHH-hcCCCCCC--HHHHhhCCHHHHhhC-----------CCc-chhhccCcCHHHHHHhHHHH
Confidence 9999999999999999985 45776665 466778999988742 321 1122221111 013457888
Q ss_pred HHHHHHhhCC
Q 024049 237 EWLVADLQKP 246 (273)
Q Consensus 237 ~~~W~~ik~~ 246 (273)
.+.|++.+++
T Consensus 305 ~~r~~~~~~~ 314 (320)
T 4euo_A 305 GERWYAWQAK 314 (320)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhhh
Confidence 9999988754
No 10
>3rpw_A ABC transporter; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.65A {Rhodopseudomonas palustris}
Probab=99.94 E-value=5.7e-26 Score=208.89 Aligned_cols=209 Identities=14% Similarity=0.177 Sum_probs=166.4
Q ss_pred CEEEEeCccccccCCCCCCChHHhcCc-ccCCcEEeeCChHHHHHHHHHHhCCCCCCCChhhhhhchHHHHHHHHHHHhc
Q 024049 1 MVIAYKKSKFRKHNLAPIEDWKDLWRP-ELAGRISMVNSPREVIGSVLKYMGASYNSNNIDLQVAGGKISVQQNLALLAN 79 (273)
Q Consensus 1 ~gi~YN~~~v~~~g~~~p~SW~dL~dp-~~kGki~~~d~~~~~~~~al~~~G~~~~~~~~~~~~~~~~~~~~~~L~~l~~ 79 (273)
++|+||++++++. .+|+||+||+++ +++|++++.+.+...++.++.+.|.+.+..+.. +.++++++|.++++
T Consensus 141 ~~l~ynk~~~~~~--~~P~tw~dl~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----~~~~a~~~l~~l~~ 213 (365)
T 3rpw_A 141 VGLVYNKDKFKGD--KAPQTWADFWDVKKFPGRRCMPAWPRFTFEAALMADGVTKDKLYPI-----DMDRALKKLKEIKP 213 (365)
T ss_dssp EEEEEETTTSCTT--SSCCSHHHHHCTTTSCSCEEEESSSTTHHHHHHHHTTCCTTSCCSC-----CHHHHHHHHHHHGG
T ss_pred EEEEEEhhhcCCC--CCCCCHHHHhChhhCCCceeCCcCchHHHHHHHHHcCCChhhcCch-----hHHHHHHHHHHHhh
Confidence 3799999999862 479999999999 899999999987888888888889877655443 46789999999999
Q ss_pred cccccc--chhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEEecCCCceeeeeeEEEecCCCCcccccCCCCCCChHH
Q 024049 80 QARLFD--STHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPSPL 157 (273)
Q Consensus 80 ~v~~~~--~~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~ 157 (273)
++..++ .++..+.|.+|++.+++.|++++..+..++.++++++| |+..+.++++|+++++|++ +
T Consensus 214 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~p--g~~~~~~~~~i~k~s~~~~------------~ 279 (365)
T 3rpw_A 214 HVVKWWTTAAQPPQLILDGEADMCLAYTGSMSKLALEGAPIDLTFN--QGFVYYDFFSIPKGAPNYD------------N 279 (365)
T ss_dssp GEEEEECSTTHHHHHHHTTSCSEEEEEHHHHHHHHHHTCSEEEEEE--EEEEEEEEEECBTTCTTHH------------H
T ss_pred hcccccCCccHHHHHHHcCCeEEEEehhHHHHHHHhCCCCeEEeeC--CeeeeceEEEEECCCCCHH------------H
Confidence 986664 34788999999999999999999888888999999997 8999999999999999998 9
Q ss_pred HHHHHHHHhcHHHhchhhhhhcCCCCCChhhhhccC-CChHHhcCCCCCCCCcccCCCC-HHHHhhceeccC-CCHH---
Q 024049 158 IHQWIEFCLQTARALPFKQEVIPGASPSALETTLVK-LPEELLKGKPSQDTNLIVGVPP-AEILARCEFLEP-LSEA--- 231 (273)
Q Consensus 158 A~~FInfllspe~q~~~~~~~~~~~~p~~~~~a~~~-l~~e~~~~~~~~~~~l~~~~p~-~~~l~~~~~~~~-~~~~--- 231 (273)
|++||+|+++||+|..+++ ..++.+++ ..+... +++++++. +|. ++.++++..... .-.+
T Consensus 280 A~~fi~~l~s~e~q~~~~~-~~~~~P~~--~~a~~~~l~~~~~~~-----------~~~~p~~~~~~~~~d~~~~~~~~~ 345 (365)
T 3rpw_A 280 ALKLLSWRLDPKRAAQLTS-TFPVALPS--KVVFDAATDKNIARY-----------WANNPENVAKAIEWSPDFWGAPSP 345 (365)
T ss_dssp HHHHHHHHTCHHHHHHHHH-HSCCBCSC--HHHHHHCSCGGGGGG-----------STTSHHHHHHSCCCCHHHHHSBCT
T ss_pred HHHHHHHHcCHHHHHHHHH-hcCCCCCC--hhHHhcCCCHHHHhh-----------CCCChHHHhcccCcCHHHHhcccc
Confidence 9999999999999999985 45665555 345455 78888764 232 344444432221 0123
Q ss_pred -----HHHHHHHHHHHhh
Q 024049 232 -----TLSDYEWLVADLQ 244 (273)
Q Consensus 232 -----~~~~~~~~W~~ik 244 (273)
.++.+.+.|+++-
T Consensus 346 ~~~~~~~~~~~~~w~~~~ 363 (365)
T 3rpw_A 346 AGNSTNEEYGQEKLNAML 363 (365)
T ss_dssp TSSSBHHHHHHHHHHHHC
T ss_pred ccccccHHHHHHHHHHHH
Confidence 6788888888764
No 11
>3pu5_A Extracellular solute-binding protein; structural genomics, PSI-2, protein structure initiative; 2.05A {Bordetella parapertussis}
Probab=99.91 E-value=1.9e-24 Score=196.14 Aligned_cols=200 Identities=17% Similarity=0.239 Sum_probs=150.7
Q ss_pred CEEEEeCccccccCCCCCCChHHhcCcccCCcE----EeeCChHH-----HHHHHHHHhCCCCCCCChhhhhhchHHHHH
Q 024049 1 MVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRI----SMVNSPRE-----VIGSVLKYMGASYNSNNIDLQVAGGKISVQ 71 (273)
Q Consensus 1 ~gi~YN~~~v~~~g~~~p~SW~dL~dp~~kGki----~~~d~~~~-----~~~~al~~~G~~~~~~~~~~~~~~~~~~~~ 71 (273)
++|+||++++++ +|+||+||++++++|++ ++.+.... .+..++...|.+. + ++.+++
T Consensus 113 ~~l~ynkd~~~~----~P~tw~dl~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~----~------~~~~a~ 178 (333)
T 3pu5_A 113 VGIAYRPDKIQG----GVKSWKEFVERTVAGEFGKQVFFNNLSSNVRGAEVLSMFGKIYGSGY----G------DIEASI 178 (333)
T ss_dssp EEEEECTTTSTT----CCSSHHHHHHHHHHTTTTTCEEEECGGGTSSHHHHHHHHHHHHSSST----T------CHHHHH
T ss_pred eEEEEchhhcCC----CCCCHHHHhChhhCCCccccccccCCcchhhHHHHHHHHHHHcCCCH----H------HHHHHH
Confidence 379999999985 89999999999999999 99875331 2223334455521 1 256888
Q ss_pred HHHHHHhcccccc-cc-hhHHHHhhcCcEEEEEeccccHHHHHhcCCC-cEEEecCCCceeeeeeEEEecCCCCcccccC
Q 024049 72 QNLALLANQARLF-DS-THYLKAFGIGDVWVAVGWSSDVLPAVKRMSN-VAVVVPKSGASLWADLWAIPAASRLETKQIG 148 (273)
Q Consensus 72 ~~L~~l~~~v~~~-~~-~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~-v~~~~P~eG~~~~~d~~~I~k~a~~~~~~~~ 148 (273)
+.|.++++++..+ .+ .+..+.|.+|++.|++.|++.+..++..|.+ +.+++|++|+..+.++++|++++ |++
T Consensus 179 ~~l~~l~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~P~~g~~~~~~~~~i~k~s-~~~---- 253 (333)
T 3pu5_A 179 ATLERMKPHIFKFFTAFNDPVVLLTSGEGAIGPGWDGRTFIAEDSTKGMVKWVDPTEGAVSSGPVMAVVKGG-KED---- 253 (333)
T ss_dssp HHHHHHGGGEEEEECSTTHHHHHHHHTSCSEEEEEHHHHHHHHHHTTTSSEEECCTTCCEEECCEEEEBTTS-CHH----
T ss_pred HHHHHhCcccccccCChHHHHHHHHcCCEEEEecccHHHHHHHhCCCCceeEEcCCCceeeccceEEEeCCC-CHH----
Confidence 9999999988444 33 4678999999999999999999888888888 99999999999999999999999 988
Q ss_pred CCCCCChHHHHHHHHHHhcHHHhchhhhhhcCCCCCChhhhhccCCChHHhcCCCCCCCCcccCCCCHHHHhhceeccCC
Q 024049 149 GRVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALETTLVKLPEELLKGKPSQDTNLIVGVPPAEILARCEFLEPL 228 (273)
Q Consensus 149 ~~~~~~~~~A~~FInfllspe~q~~~~~~~~~~~~p~~~~~a~~~l~~e~~~~~~~~~~~l~~~~p~~~~l~~~~~~~~~ 228 (273)
+|++||+||+|||+|..+++ ..++.+++. .+ .+++++++. .|. ++++.....-
T Consensus 254 --------~A~~Fi~~l~s~e~q~~~~~-~~g~~P~~~--~~--~~~~~~~~~-----------~p~---~~~~~~~d~~ 306 (333)
T 3pu5_A 254 --------LAKAFMNYALGEEAQKAFCE-AMYYGAVNR--KV--QYSEKLKHR-----------LPS---IDSVQLVDTA 306 (333)
T ss_dssp --------HHHHHHHHHTSHHHHHHHHH-HHTCBCSCT--TC--CCCTTTTTT-----------SCC---TTTCBCCCHH
T ss_pred --------HHHHHHHHHcCHHHHHHHHH-hcCCCCCCC--Cc--CCCHHHHhc-----------Ccc---HhhccccCHH
Confidence 99999999999999999985 446655442 23 377877653 232 2233222110
Q ss_pred -CHHHHHHHHHHHHHhhCC
Q 024049 229 -SEATLSDYEWLVADLQKP 246 (273)
Q Consensus 229 -~~~~~~~~~~~W~~ik~~ 246 (273)
-.+.++.+.+.|++...+
T Consensus 307 ~~~~~~~~~~~~w~~~~~~ 325 (333)
T 3pu5_A 307 LLIKNMSALLDLWNKRIAS 325 (333)
T ss_dssp HHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 135678899999987754
No 12
>4edp_A ABC transporter, substrate-binding protein; clostridium PERF ATCC 13124, center for structural genomics of infectious DI csgid; 1.85A {Clostridium perfringens}
Probab=99.86 E-value=6.3e-21 Score=172.61 Aligned_cols=201 Identities=19% Similarity=0.262 Sum_probs=150.1
Q ss_pred EEEEeCccccccCCCCCCChHHhcCcccCCcEEeeCChH----HHHHHHHHHhCCCCCCCChhhhhhchHHHHHHHHHHH
Q 024049 2 VIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPR----EVIGSVLKYMGASYNSNNIDLQVAGGKISVQQNLALL 77 (273)
Q Consensus 2 gi~YN~~~v~~~g~~~p~SW~dL~dp~~kGki~~~d~~~----~~~~~al~~~G~~~~~~~~~~~~~~~~~~~~~~L~~l 77 (273)
+|+||+++ + ++|+||+||++++++|++++.+... ..+...+...|.+.++ + +..++.+.+.++
T Consensus 142 ~l~ynkd~-~----~~p~tw~el~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~G~~~~~---~-----~~~~~~~~~~~l 208 (351)
T 4edp_A 142 GIVVDPSA-G----IEINSWEDLWKPELKNKIAIPDITTTNGPAMVEIAAEKAGVDVKT---D-----NGEAAFKELEAL 208 (351)
T ss_dssp EEEECGGG-C----CCCCSGGGGGCGGGTTCEEEECTTSTTHHHHHHHHHHHHTCCHHH---H-----TTHHHHHHHHHH
T ss_pred EEEEcCCC-C----CCCCCHHHHhChHhcCCeeecCcccccchHHHHHHHHhcCCCCCh---h-----hHHHHHHHHHHH
Confidence 78999999 4 4899999999999999999987432 1222333445665432 1 246788999999
Q ss_pred hccccccc--chhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEEecCCCceeeeeeEEEecCCCCcccccCCCCCCCh
Q 024049 78 ANQARLFD--STHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPS 155 (273)
Q Consensus 78 ~~~v~~~~--~~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~ 155 (273)
+++...+. ..+..+.|.+|++.+++.|+..+..+...+.++.+++|++|...+.++++|+++++|++
T Consensus 209 ~~~~~~~~~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~~~~~~~P~~g~~~~~~~~~i~~~s~~~~----------- 277 (351)
T 4edp_A 209 KPNVVKTYSKSSDLANMFSNGEIVAAVASDFAFGTISKAKPEVINVIPESGTYLNFNTININKNSKNKD----------- 277 (351)
T ss_dssp GGGEEEEECCHHHHHHHHHTTSCSEEEEEHHHHHHHHHHCTTCEEECCTTCCBEEEEEEEEBTTCSCHH-----------
T ss_pred HHhhhcccCChHHHHHHHHcCCEEEEecCcHHHHHHHhcCCCeeeeCCCCCcccceeeEEEECCCCCHH-----------
Confidence 98765443 35678999999999999999888888888999999999999999999999999999988
Q ss_pred HHHHHHHHHHhcHHHhchhhhhhcCCCCCChhhhhccCCChHHhcCCCCCCCCcccCCCCHHHHhhceeccC-CCHHHHH
Q 024049 156 PLIHQWIEFCLQTARALPFKQEVIPGASPSALETTLVKLPEELLKGKPSQDTNLIVGVPPAEILARCEFLEP-LSEATLS 234 (273)
Q Consensus 156 ~~A~~FInfllspe~q~~~~~~~~~~~~p~~~~~a~~~l~~e~~~~~~~~~~~l~~~~p~~~~l~~~~~~~~-~~~~~~~ 234 (273)
+|.+||+||++||.|..+.+ ..++.+++ . ...+++++++.++ + ++.++++..... .-.+.++
T Consensus 278 -~A~~fi~~l~s~e~q~~~~~-~~g~~P~~--~--~~~~~~~~~~~~~---------~--~~~~~~~~~~d~~~~~~~~~ 340 (351)
T 4edp_A 278 -LAYEFINYALSKEVQEKTAK-ALNESPVN--K--EVKLSEEETKNLT---------Y--GPVVDNAKVIDFKFVNSVMD 340 (351)
T ss_dssp -HHHHHHHHHTSHHHHHHHHH-HHCCBCCB--T--TCCCCTTTTTTSC---------C--SHHHHTCBCCCHHHHHHHHH
T ss_pred -HHHHHHHHhcCHHHHHHHHH-hcCCCCCc--C--CccCCHHHHhccC---------C--chhhhhccCCCHHHHhhhHH
Confidence 99999999999999999985 44544333 2 3357788776431 3 234555543222 1135577
Q ss_pred HHHHHHHHh
Q 024049 235 DYEWLVADL 243 (273)
Q Consensus 235 ~~~~~W~~i 243 (273)
.|.+.|+++
T Consensus 341 ~~~~~w~~~ 349 (351)
T 4edp_A 341 QWVNNWNRI 349 (351)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 888888875
No 13
>3c9h_A ABC transporter, substrate binding protein; structural genom MCSG, PSI-2, protein structure initiative; HET: CIT; 1.90A {Agrobacterium tumefaciens str}
Probab=99.82 E-value=9.4e-20 Score=167.29 Aligned_cols=154 Identities=15% Similarity=0.243 Sum_probs=118.6
Q ss_pred CEEEEeCccccccCCCCCCChHHhcC------cccCCcEEeeCChHHHHHHHHHHhCCCCCCCChhhhhhchHHHHHHHH
Q 024049 1 MVIAYKKSKFRKHNLAPIEDWKDLWR------PELAGRISMVNSPREVIGSVLKYMGASYNSNNIDLQVAGGKISVQQNL 74 (273)
Q Consensus 1 ~gi~YN~~~v~~~g~~~p~SW~dL~d------p~~kGki~~~d~~~~~~~~al~~~G~~~~~~~~~~~~~~~~~~~~~~L 74 (273)
++|+||++++++. .+|+||+||++ ++++|++++.+......+..+.... .. +.+++++++
T Consensus 137 ~~l~YNk~~~~~~--~~P~tw~dL~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~-------~~-----~~~~a~~~l 202 (355)
T 3c9h_A 137 AVFVYHKPSFTTE--KPPATRAEFVDYLERHAKEVHGRIATYDIERSGVGFLFMSRD-------QE-----QFGDIWSVI 202 (355)
T ss_dssp EEEEEEGGGCSSS--CCCCSHHHHHHHHHHTHHHHTTCEEEECTTC-CHHHHHHHHH-------HH-----HCTTHHHHH
T ss_pred EEEEEEHHhcCCC--CCCCCHHHHHHHHHhcchhhCCceeecCccccchHHHHHhcc-------hh-----ccHHHHHHH
Confidence 3799999999863 47999999998 8999999998755433333322110 00 012467778
Q ss_pred HHHhcc-cccccc-hhHHHHhhcCcEEEEEeccccHHHH-HhcCCCcEEEecCCCceeeeeeEEEecCCCCcccccCCCC
Q 024049 75 ALLANQ-ARLFDS-THYLKAFGIGDVWVAVGWSSDVLPA-VKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRV 151 (273)
Q Consensus 75 ~~l~~~-v~~~~~-~~~~~~~~~Gev~va~~~s~~~~~~-~~~~~~v~~~~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~ 151 (273)
.+++++ +..+.+ ++..+.|.+|++.|++.|++..... ...+.++++++|++|+..+.++++|+++++|++
T Consensus 203 ~~l~~~~~~~~~~~~~~~~~~~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~P~~g~~~~~~~~~I~k~s~~~e------- 275 (355)
T 3c9h_A 203 KAMGAAGVKVYSTSSAILERVSDGRFVLGYNILGSYAADWASRHPDVGIVLPKDYTVVMSRIGLVPEAAANPE------- 275 (355)
T ss_dssp HHHHHTTCEEESCHHHHHHHHHTTSCSEEEEEEHHHHHHHHHHCTTEEEECCSSCEEEECCEEEEETTBSCHH-------
T ss_pred HHHHhcCCeecCCcHHHHHHHHCCCeEEEEecchhHHHHHHhcCCCeeEEecCCCceeeeeEEEEECCCCCHH-------
Confidence 888764 444443 5678999999999999998887654 456788999999999999999999999999998
Q ss_pred CCChHHHHHHHHHHhcHHHhchhhhhhcCC
Q 024049 152 RGPSPLIHQWIEFCLQTARALPFKQEVIPG 181 (273)
Q Consensus 152 ~~~~~~A~~FInfllspe~q~~~~~~~~~~ 181 (273)
+|++||+|++|||.|..+.+ ..++
T Consensus 276 -----aA~~Fi~fl~s~e~q~~~~~-~~~~ 299 (355)
T 3c9h_A 276 -----LGRRYLEFFMSKEGQTIMAR-QLQI 299 (355)
T ss_dssp -----HHHHHHHHHHSHHHHHHHHH-HSCC
T ss_pred -----HHHHHHHHHcCHHHHHHHHh-cCCC
Confidence 99999999999999999874 4344
No 14
>2qry_A Thiamine-binding periplasmic protein; thiamin binding protein, ABC transporter, transport protein; HET: TPS; 2.25A {Escherichia coli}
Probab=99.81 E-value=8.1e-20 Score=166.13 Aligned_cols=166 Identities=19% Similarity=0.184 Sum_probs=121.7
Q ss_pred CEEEEeCccccccCCCCCCChHHhcCcccCCcEEeeCChHHHHHHHHHHhCCCCCCCChhhhhhchHHHHHHHHHHHhcc
Q 024049 1 MVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNIDLQVAGGKISVQQNLALLANQ 80 (273)
Q Consensus 1 ~gi~YN~~~v~~~g~~~p~SW~dL~dp~~kGki~~~d~~~~~~~~al~~~G~~~~~~~~~~~~~~~~~~~~~~L~~l~~~ 80 (273)
++|+||++++++ +|+||+||++++++|++++.+......+.++...+.... + +++.+++.+++++
T Consensus 128 ~~l~YNkd~~~~----~P~Tw~dl~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~----------g-~~a~~~~~~l~~~ 192 (330)
T 2qry_A 128 FAFVYDKNKLKN----PPQSLKELVESDQNWRVIYQDPRTSTPGLGLLLWMQKVY----------G-DDAPQAWQKLAKK 192 (330)
T ss_dssp EEEEEETTTCSS----CCSSHHHHHHCSSCCCEEEECTTTCHHHHHHHHHHHHHH----------G-GGHHHHHHHHHTT
T ss_pred eEEEEehhhccC----CCCCHHHHHhHHhcCeeEeeCCCCCchHHHHHHHHHHhh----------C-hHHHHHHHHHHhc
Confidence 379999999986 899999999999999999987544444433322221100 0 1456777788777
Q ss_pred ccccc--chhHHHHhhcCcEEEEEeccccHH-HHH-hcCCCcEEEecCCCceeeeeeEEEecCCCCcccccCCCCCCChH
Q 024049 81 ARLFD--STHYLKAFGIGDVWVAVGWSSDVL-PAV-KRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPSP 156 (273)
Q Consensus 81 v~~~~--~~~~~~~~~~Gev~va~~~s~~~~-~~~-~~~~~v~~~~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~ 156 (273)
...+. .++..+.|.+|++.|++.|++... ... ..+.++++++|++|...+.++++|+++++|++
T Consensus 193 ~~~~~~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~~~~i~~~s~~~~------------ 260 (330)
T 2qry_A 193 TVTVTKGWSEAYGLFLKGESDLVLSYTTSPAYHILEEKKDNYAAANFSEGHYLQVEVAARTAASKQPE------------ 260 (330)
T ss_dssp EEEEESSHHHHHHHHHTTSCSEEEEETTHHHHHHHHHCCCCEEECCCTTCEEEEEEEEEEBTTCSCHH------------
T ss_pred CceeccChHHHHHHHhCCCEEEEEecccHHHHHhhhccCCceeEEeCCCCCeeeeeEEEEECCCCCHH------------
Confidence 54443 245678999999999999988753 333 34568898889899999999999999999988
Q ss_pred HHHHHHHHHhcHHHhchhhhhhcCCCCCChhhhhccCCChHHh
Q 024049 157 LIHQWIEFCLQTARALPFKQEVIPGASPSALETTLVKLPEELL 199 (273)
Q Consensus 157 ~A~~FInfllspe~q~~~~~~~~~~~~p~~~~~a~~~l~~e~~ 199 (273)
+|++||+||++||.|..+... .++ .|+. ...+|++++
T Consensus 261 ~A~~fi~fl~s~e~q~~~~~~-~g~-~P~~----~v~~~~~~~ 297 (330)
T 2qry_A 261 LAQKFLQFMVSPAFQNAIPTG-NWM-YPVA----NVTLPAGFE 297 (330)
T ss_dssp HHHHHHHHHTSHHHHTTHHHH-TCS-EESS----CCCCCTTGG
T ss_pred HHHHHHHHHcCHHHHHHHHhh-ccc-cccC----CCCCChhhh
Confidence 999999999999999998743 333 3331 234666654
No 15
>3e13_X Putative iron-uptake ABC transport system, periplasmic iron-binding protein; beta sheet surrounded by alpha helices; 1.60A {Campylobacter jejuni} SCOP: c.94.1.1 PDB: 1y4t_A
Probab=99.78 E-value=1.9e-18 Score=154.85 Aligned_cols=165 Identities=16% Similarity=0.205 Sum_probs=120.7
Q ss_pred CEEEEeCcc-ccccCCCCCCChHHhcCcccCCcEEeeCChHH----HHHHHHHHhCCCCCCCChhhhhhchHHHHHHHHH
Q 024049 1 MVIAYKKSK-FRKHNLAPIEDWKDLWRPELAGRISMVNSPRE----VIGSVLKYMGASYNSNNIDLQVAGGKISVQQNLA 75 (273)
Q Consensus 1 ~gi~YN~~~-v~~~g~~~p~SW~dL~dp~~kGki~~~d~~~~----~~~~al~~~G~~~~~~~~~~~~~~~~~~~~~~L~ 75 (273)
++|+||+++ |++ .+|+||++|++++++|++++.+.... .+...+...| .+++.+++.
T Consensus 104 ~~l~yn~~~~~~~---~~p~tw~dl~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~G---------------~~~a~~~~~ 165 (322)
T 3e13_X 104 RIIAYNKNTNIDI---SKMKNYEDLAKAEFKGEIVMRSATAPYSKTLLASIIANDG---------------NKEAKAWAK 165 (322)
T ss_dssp EEEEEETTSCCCC---TTCCSGGGGGSGGGTTCEECCCTTSHHHHHHHHHHHHHHC---------------HHHHHHHHH
T ss_pred EEEEECCccccCC---CCCCCHHHHhhhhhcCeEeecCCCCchhHHHHHHHHHhcC---------------HHHHHHHHH
Confidence 379999999 986 48999999999999999999875432 1111222222 346788888
Q ss_pred HHhccccccc--c-hhHHHHhhcCcEEEEEecc---ccHHH-----HHhcCCCcEEEecC---CCceeeeeeEEEecCCC
Q 024049 76 LLANQARLFD--S-THYLKAFGIGDVWVAVGWS---SDVLP-----AVKRMSNVAVVVPK---SGASLWADLWAIPAASR 141 (273)
Q Consensus 76 ~l~~~v~~~~--~-~~~~~~~~~Gev~va~~~s---~~~~~-----~~~~~~~v~~~~P~---eG~~~~~d~~~I~k~a~ 141 (273)
+++++...+. . .+..+.|.+|++.+++.++ +.+.. ....+.++.+++|. +|+..+.++++|+++++
T Consensus 166 ~l~~~~~~~~~~~~~~~~~~~~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~g~~~~~~~~~i~~~s~ 245 (322)
T 3e13_X 166 GVLENLATNPKGGDRDQARQVFAGEAKFAVMNTYYIGLLKNSKNPKDVEVGNSLGIIFPNQDNRGTHINISGIAMTKSSK 245 (322)
T ss_dssp HHHHHBSSSCCSSHHHHHHHHHHTSCSEEEEEHHHHHHHHTCSSHHHHHHHHTEEEECTTTTTTCBCEEEEEEEEETTCS
T ss_pred HHHHhcCcCCCCCcHHHHHHHHCCCCcEEeechHHHHHHHhccccchhccccceeEecCCCCCCCceeeeeeeEEecCCC
Confidence 8888765543 2 3457889999999999843 33221 22335689999999 89999999999999999
Q ss_pred CcccccCCCCCCChHHHHHHHHHHhcHHHhchhhhhhcCCCCCChhhhhccCCChHHhc
Q 024049 142 LETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALETTLVKLPEELLK 200 (273)
Q Consensus 142 ~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~~~~~~~~p~~~~~a~~~l~~e~~~ 200 (273)
|++ +|++||+||++||.|..+.. . ++..|.. . ....++++..
T Consensus 246 ~~~------------~A~~fi~fl~s~e~q~~~~~-~-~~~~P~~-~--~~~~~~~~~~ 287 (322)
T 3e13_X 246 NQD------------AAKKFMEFMLSPEIQKILTD-S-NYEFPIR-N--DVELSQTVKD 287 (322)
T ss_dssp CHH------------HHHHHHHHHTSHHHHHHHHH-T-TCCEESS-T--TSCCCHHHHH
T ss_pred CHH------------HHHHHHHHHhCHHHHHHHHh-c-CcccCCc-c--CCCCcccCCC
Confidence 988 99999999999999999985 3 3334442 1 2345666543
No 16
>2voz_A FUTA2, periplasmic iron-binding protein; ferric binding protein, metal-binding protein, TAT; 1.70A {Synechocystis SP} PDB: 2vp1_A*
Probab=99.77 E-value=1.9e-18 Score=157.06 Aligned_cols=169 Identities=17% Similarity=0.157 Sum_probs=118.8
Q ss_pred CEEEEeCccccccCCCCCCChHHhcCcccCCcEEeeCChHHHHHHHHHHhCCCCCCCChhhhhhchHHHHHHHHHHHhcc
Q 024049 1 MVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNIDLQVAGGKISVQQNLALLANQ 80 (273)
Q Consensus 1 ~gi~YN~~~v~~~g~~~p~SW~dL~dp~~kGki~~~d~~~~~~~~al~~~G~~~~~~~~~~~~~~~~~~~~~~L~~l~~~ 80 (273)
++|+||++++++ .+|+||+||++++++|++++.+... .++..+...+... .+.+++.+++.++.++
T Consensus 131 ~~l~YNkd~~~~---~~P~tw~dl~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~----------~g~~~a~~~~~~l~~~ 196 (346)
T 2voz_A 131 RVLYYSRDRVNP---ADLSTYEALADPQWRGKILVRPSSN-VYNLSLTASRIAI----------HGEPETRRWLQGLVGN 196 (346)
T ss_dssp EEEEEETTTCCG---GGCCCSGGGGSGGGTTTEECCCTTS-HHHHHHHHHHHHH----------HCHHHHHHHHHHHHHT
T ss_pred eEEEEehhhcCc---cCCCCHHHHhhHHhcCcEEecCCCC-cchHHHHHHHHHh----------hchHHHHHHHHHHHHh
Confidence 379999999986 3789999999999999999876432 2222211111100 0123567888888776
Q ss_pred cccc-c-c-hhHHHHhhcCcEEEEEeccccHHHHHh------c--CCCcEEEec-----CCCceeeeeeEEEecCCCCcc
Q 024049 81 ARLF-D-S-THYLKAFGIGDVWVAVGWSSDVLPAVK------R--MSNVAVVVP-----KSGASLWADLWAIPAASRLET 144 (273)
Q Consensus 81 v~~~-~-~-~~~~~~~~~Gev~va~~~s~~~~~~~~------~--~~~v~~~~P-----~eG~~~~~d~~~I~k~a~~~~ 144 (273)
...+ . + .+..+.|.+|++.|++.|+.....+.. . +.++++++| ++|...+.++++|+++++|++
T Consensus 197 ~~~~~~~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~g~~~~~~~~~i~~~s~~~~ 276 (346)
T 2voz_A 197 FARQPEGNDTAQIRAIAAGIGDVAIANSYYYIRLQKSTDPADQEVVEKVSLFFPNTGSGERGTHVNVSGAGVLKNAPNRD 276 (346)
T ss_dssp BSSSCCSCHHHHHHHHHTTSCSEEEEEHHHHHHHHHCCCHHHHHHHHHEEEECCSCSTTSCCBCEEEEEEEEBTTCTTHH
T ss_pred cCccccCCcHHHHHHHHCCCceEEecccHHHHHHhhcccccccCCCCceeEecCCCCCCCCCceecceeEEEeCCCCCHH
Confidence 5322 2 2 367889999999999988765544332 1 246888899 678889999999999999998
Q ss_pred cccCCCCCCChHHHHHHHHHHhcHHHhchhhhhhcCCCCCChhhhhccCCChHHhc
Q 024049 145 KQIGGRVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALETTLVKLPEELLK 200 (273)
Q Consensus 145 ~~~~~~~~~~~~~A~~FInfllspe~q~~~~~~~~~~~~p~~~~~a~~~l~~e~~~ 200 (273)
+|++||+||++||.|..+.. ..++ .|.. . ....++++..
T Consensus 277 ------------aA~~fi~~l~s~e~q~~~~~-~~g~-~P~~-~--~~~~~~~~~~ 315 (346)
T 2voz_A 277 ------------AAIAFLEYLASDDAQRYFAE-GNNE-YPVI-P--GVPIDPVLAA 315 (346)
T ss_dssp ------------HHHHHHHHHTSHHHHHHHHH-HTTC-EESS-T--TSCCCHHHHT
T ss_pred ------------HHHHHHHHHcCHHHHHHHHh-ccCc-ccCc-C--CCCCCcccCC
Confidence 99999999999999999874 3343 3432 1 2345666643
No 17
>1q35_A Iron binding protein FBPA; metal binding protein; 1.20A {Mannheimia haemolytica} SCOP: c.94.1.1 PDB: 1si0_A 1si1_A
Probab=99.76 E-value=3.7e-18 Score=153.57 Aligned_cols=169 Identities=16% Similarity=0.063 Sum_probs=120.6
Q ss_pred EEEEeCccccccCCCCCCChHHhcCcccCCcEEeeCChHHHHHHHHHHhCCCCCCCChhhhhhchHHHHHHHHHHHhccc
Q 024049 2 VIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNIDLQVAGGKISVQQNLALLANQA 81 (273)
Q Consensus 2 gi~YN~~~v~~~g~~~p~SW~dL~dp~~kGki~~~d~~~~~~~~al~~~G~~~~~~~~~~~~~~~~~~~~~~L~~l~~~v 81 (273)
+|+||+++++++ .+|+||++|++++++|++++.+.. ..++..+...+.. . .|..++.+++.+++++.
T Consensus 104 ~l~ynkd~~~~~--~~P~tw~el~~~~~~g~~~~~~~~-~~~~~~~~~~~~~-----~-----~G~~~a~~~~~~l~~~~ 170 (320)
T 1q35_A 104 VIYTSKDRVGKL--PAGFDYLDLAKPEYKGKVCVRSGK-NSYNVSLFAAMIE-----H-----YGIEKTKAFLEGLKANL 170 (320)
T ss_dssp EEEEETTTTCSC--CTTCCGGGGGSGGGTTCEECSCTT-SHHHHHHHHHHHH-----H-----HHHHHHHHHHHHHHHTB
T ss_pred EEEEehHHhhhc--CCCCCHHHHhhHHhCCcEEeccCC-CchhHHHHHHHHH-----h-----cCHHHHHHHHHHHHHhC
Confidence 789999999864 479999999999999999987643 2233222111100 0 02346778888888765
Q ss_pred ccc--cc-hhHHHHhhcCcEEEEEeccccHHHHHh--c----CCCcEEEec--CCCceeeeeeEEEecCCCCcccccCCC
Q 024049 82 RLF--DS-THYLKAFGIGDVWVAVGWSSDVLPAVK--R----MSNVAVVVP--KSGASLWADLWAIPAASRLETKQIGGR 150 (273)
Q Consensus 82 ~~~--~~-~~~~~~~~~Gev~va~~~s~~~~~~~~--~----~~~v~~~~P--~eG~~~~~d~~~I~k~a~~~~~~~~~~ 150 (273)
..+ .. .+..+.|.+|++.|++.|+.....+.. . +.++++++| ++|+..+.++++|+++++|++
T Consensus 171 ~~~~~~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~g~~~~~~~~~i~~~s~~~~------ 244 (320)
T 1q35_A 171 ARKPQGGDRDQVKAIKEGICDYSIGNSYYYGKMLDDEKQKSWAEAAIINFPSGEHGTHKNISGVVIAKHSPNKA------ 244 (320)
T ss_dssp SSCCCSCHHHHHHHHHHTSCSEEEEETHHHHHHHHSTTTHHHHHTEEEECCCSTTCBEEEEEEEEEBTTCTTHH------
T ss_pred CCCCCCCCHHHHHHHHCCCccEEeccHHHHHHhhhcccccCCCcceEEecCCCCCCccccceeEEEECCCCCHH------
Confidence 432 22 257789999999999998876655442 1 246888899 679999999999999999988
Q ss_pred CCCChHHHHHHHHHHhcHHHhchhhhhhcCCCCCChhhhhccCCChHHhc
Q 024049 151 VRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALETTLVKLPEELLK 200 (273)
Q Consensus 151 ~~~~~~~A~~FInfllspe~q~~~~~~~~~~~~p~~~~~a~~~l~~e~~~ 200 (273)
+|++||+||++||.|..+.. ..++ .|.. . ....+++++.
T Consensus 245 ------aA~~fi~~l~s~e~q~~~~~-~~~~-~P~~-~--~~~~~~~~~~ 283 (320)
T 1q35_A 245 ------NAVKLIEYLSGEKAQGLYAE-LNHE-YPVK-E--GIEPSAIVKG 283 (320)
T ss_dssp ------HHHHHHHHHHSHHHHHHHHH-HHCC-EESS-T--TCCCCHHHHH
T ss_pred ------HHHHHHHHHhCHHHHHHHhc-cCcc-cCcC-C--CCCCCccCCC
Confidence 99999999999999998874 3343 3331 2 2335666654
No 18
>1xvx_A YFUA; periplasmic iron binding protein, iron binding protein; 1.53A {Yersinia enterocolitica} SCOP: c.94.1.1 PDB: 1xvy_A*
Probab=99.74 E-value=3.9e-17 Score=146.50 Aligned_cols=148 Identities=15% Similarity=0.132 Sum_probs=110.7
Q ss_pred CEEEEeCccccccCCCCCCChHHhcCcccCCcEEeeCChHHH--HHHHHHHhCCCCCCCChhhhhhchHHHHHHHHHHHh
Q 024049 1 MVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREV--IGSVLKYMGASYNSNNIDLQVAGGKISVQQNLALLA 78 (273)
Q Consensus 1 ~gi~YN~~~v~~~g~~~p~SW~dL~dp~~kGki~~~d~~~~~--~~~al~~~G~~~~~~~~~~~~~~~~~~~~~~L~~l~ 78 (273)
++|+||++++++++ +|+||++|++++++|++++....... +..++...++ .+++.+++.++.
T Consensus 106 ~~l~ynk~~~~~~~--~P~tw~dl~~~~~~g~~~~~~~~~~~~~~~~~~~~~~G--------------~~~a~~~~~~l~ 169 (312)
T 1xvx_A 106 TVFVYNPEKISEAE--LPKSIMDLAKPEWKGRWAASPSGADFQAIVSAMLELKG--------------EKATLEWLKAMK 169 (312)
T ss_dssp EEEEECTTTSCGGG--SCSSGGGGGSGGGTTSEEECTTSHHHHHHHHHHHHHHC--------------HHHHHHHHHHHH
T ss_pred eEEEEEhhhccccC--CCCCHHHHhCHHhcCCEeeCCCCccHHHHHHHHHHHhC--------------cHHHHHHHHHHH
Confidence 37899999998754 68999999999999999887321111 1112222111 135677777777
Q ss_pred cccccccc-hhHHHHhhcCcEEEEEeccccHHHHHh----cCCCcEEEecCC---CceeeeeeEEEecCCCCcccccCCC
Q 024049 79 NQARLFDS-THYLKAFGIGDVWVAVGWSSDVLPAVK----RMSNVAVVVPKS---GASLWADLWAIPAASRLETKQIGGR 150 (273)
Q Consensus 79 ~~v~~~~~-~~~~~~~~~Gev~va~~~s~~~~~~~~----~~~~v~~~~P~e---G~~~~~d~~~I~k~a~~~~~~~~~~ 150 (273)
++...+.+ .+..+.|.+|++.|++.|++.+..... .+.++++++|.+ |...+.++++|+++++|++
T Consensus 170 ~~~~~~~~~~~~~~~~~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~g~~~~~~~~~i~~~s~~~~------ 243 (312)
T 1xvx_A 170 TNFTAYKGNSTVMKAVNAGQIDGGVIYHYYRFVDQAKTGENSGKTQLHYFKHQDPGAFVSISGGGVLASSKHPK------ 243 (312)
T ss_dssp HHEEECSSHHHHHHHHHTTSSSEEEEETHHHHHHHTTTCTTTTTCEEECCCTTCGGGCEEEEEEEEBTTCSSHH------
T ss_pred HhCcccCCchHHHHHHHcCceEEEEecchhHHHHHhhcccCCCceEEEccCCCCCcceeeeeeEEEecCCCCHH------
Confidence 66533333 467889999999999999887765332 345788888976 6778889999999999988
Q ss_pred CCCChHHHHHHHHHHhcHHHhchh-hh
Q 024049 151 VRGPSPLIHQWIEFCLQTARALPF-KQ 176 (273)
Q Consensus 151 ~~~~~~~A~~FInfllspe~q~~~-~~ 176 (273)
+|++||+||++||.|..+ ..
T Consensus 244 ------~A~~fi~fl~s~e~q~~~~~~ 264 (312)
T 1xvx_A 244 ------EAQEFVKWITGKSGQDILRTN 264 (312)
T ss_dssp ------HHHHHHHHHHSHHHHHHHHHS
T ss_pred ------HHHHHHHHHhCHHHHHHHhhc
Confidence 999999999999999988 64
No 19
>2pt1_A Iron transport protein; C-clamp, iron-binding protein, solute-binding protein, perip binding protein, ABC transporter, metal transport; 2.00A {Synechocystis SP} PDB: 2pt2_A 3f11_A
Probab=99.74 E-value=8.5e-18 Score=152.25 Aligned_cols=196 Identities=16% Similarity=0.143 Sum_probs=131.7
Q ss_pred EEEEeCccccccCCCCCCChHHhcCcccCCcEEeeCChHHHHHHHHHHhCCCCCCCChhhhhhchHHHHHHHHHHHhccc
Q 024049 2 VIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNIDLQVAGGKISVQQNLALLANQA 81 (273)
Q Consensus 2 gi~YN~~~v~~~g~~~p~SW~dL~dp~~kGki~~~d~~~~~~~~al~~~G~~~~~~~~~~~~~~~~~~~~~~L~~l~~~v 81 (273)
+|+||+++++++ +|+||+||++++++|++++.+.. ..++..+...+.+ .. +..++.+++.++.++.
T Consensus 122 ~l~Ynkd~~~~~---~p~tw~el~~~~~~g~~~~~~~~-~~~~~~~~~~~~~-----~~-----g~~~a~~~~~~l~~~~ 187 (334)
T 2pt1_A 122 VIMYNKGKVKPE---ELSTYEELADPKWKGRVIIRSSS-NEYNQSLVASLVV-----AD-----GEESTLAWAKGFVSNF 187 (334)
T ss_dssp EEEEETTTCCGG---GCCCSGGGGSGGGTTCBCCCCTT-SHHHHHHHHHHHH-----HH-----CHHHHHHHHHHHHHTB
T ss_pred EEEEeccccccc---CCCCHHHHhhhhhcCeeEecCCC-CchHHHHHHHHHH-----cc-----ChHHHHHHHHHHHHhc
Confidence 799999999874 68999999999999999887643 2333222221110 00 2356778888887764
Q ss_pred ccc--cc-hhHHHHhhcCcEEEEEeccccHHHHHh--------cCCCcEEEecC---CCceeeeeeEEEecCCCCccccc
Q 024049 82 RLF--DS-THYLKAFGIGDVWVAVGWSSDVLPAVK--------RMSNVAVVVPK---SGASLWADLWAIPAASRLETKQI 147 (273)
Q Consensus 82 ~~~--~~-~~~~~~~~~Gev~va~~~s~~~~~~~~--------~~~~v~~~~P~---eG~~~~~d~~~I~k~a~~~~~~~ 147 (273)
..+ .. .+..+.|.+|++.|++.|+.....+.. .+.++++++|. +|+..+.++++|+++++|++
T Consensus 188 ~~~~~~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~g~~~~~~~~~i~~~s~~~~--- 264 (334)
T 2pt1_A 188 AREPQGNDTAQIEAVSSGEADLTLANTYYMGRLLESEDPAQKAIAENVGVFFPNQEGRGTHVNVSGVGVVKTAPNRE--- 264 (334)
T ss_dssp SSCCCSCHHHHHHHHHHTSCSEEEEEHHHHHHHHTCSCHHHHHHHHTEEEECCCTTTTCBCEEEEEEEEBTTCTTHH---
T ss_pred CCCCCCCCHHHHHHHhcCceeEEeccchhhHhhhhcccccccccccceeEEecCCCCCCCEeceeEEEEECCCCCHH---
Confidence 322 22 357789999999999987655444332 13478888998 68888999999999999988
Q ss_pred CCCCCCChHHHHHHHHHHhcHHHhchhhhhhcCCCCCChhhhhccCCChHHhcCCCCCCCCcccCCCCHHHHhhceeccC
Q 024049 148 GGRVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALETTLVKLPEELLKGKPSQDTNLIVGVPPAEILARCEFLEP 227 (273)
Q Consensus 148 ~~~~~~~~~~A~~FInfllspe~q~~~~~~~~~~~~p~~~~~a~~~l~~e~~~~~~~~~~~l~~~~p~~~~l~~~~~~~~ 227 (273)
+|++||+||++||.|..+.. ..++ .|.. . ....++++++.. .++.. ... +..
T Consensus 265 ---------aA~~fi~~l~s~e~q~~~~~-~~~~-~P~~-~--~~~~~~~~~~~~---------~~~~~----~~d-~~~ 316 (334)
T 2pt1_A 265 ---------GAVKFIEFLVSEPAQAFLAQ-NNYE-YPVL-A--GVPLNKSVASFG---------EFKSD----TTS-LDK 316 (334)
T ss_dssp ---------HHHHHHHHHTSHHHHHHHHH-HHCC-EESS-T--TCCCCHHHHTTC---------CCCBC----CSC-GGG
T ss_pred ---------HHHHHHHHHhCHHHHHHHHh-hcCC-cCcc-C--CCCCCcccCChh---------hcCCC----CCC-HHH
Confidence 99999999999999999875 3233 3432 1 233566665421 12210 011 122
Q ss_pred CCHHHHHHHHHHHHHh
Q 024049 228 LSEATLSDYEWLVADL 243 (273)
Q Consensus 228 ~~~~~~~~~~~~W~~i 243 (273)
+ .+.++.+.++|+++
T Consensus 317 ~-~~~~~~~~~~~~~~ 331 (334)
T 2pt1_A 317 L-GPALAPATKIMNEA 331 (334)
T ss_dssp T-GGGHHHHHHHHHHH
T ss_pred H-hhhhHHHHHHHHhc
Confidence 2 24578888888875
No 20
>1y9u_A Putative iron binding protein; periplasmic binding protein, iron tyrosinate interaction, metal binding protein; 1.39A {Bordetella pertussis tohama I} SCOP: c.94.1.1 PDB: 2ows_A 2owt_A
Probab=99.72 E-value=6.5e-17 Score=145.54 Aligned_cols=162 Identities=15% Similarity=0.129 Sum_probs=113.7
Q ss_pred CEEEEeCc-cccccCCCCCCChHHhcCcccCCcEEeeCChHHH----HHHHHHHhCCCCCCCChhhhhhchHHHHHHHHH
Q 024049 1 MVIAYKKS-KFRKHNLAPIEDWKDLWRPELAGRISMVNSPREV----IGSVLKYMGASYNSNNIDLQVAGGKISVQQNLA 75 (273)
Q Consensus 1 ~gi~YN~~-~v~~~g~~~p~SW~dL~dp~~kGki~~~d~~~~~----~~~al~~~G~~~~~~~~~~~~~~~~~~~~~~L~ 75 (273)
++|+||++ ++++ | ||+||++++++|++++.+..... +...+...| .+++.+++.
T Consensus 107 ~~l~yNkd~~~~~-----P-tw~dl~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~G---------------~~~a~~~~~ 165 (323)
T 1y9u_A 107 RVLYVEKDLKLDS-----F-RYGDLADPKWKGKVCIRSGQHPYNTALVAAMIAHDG---------------AEATEKWLR 165 (323)
T ss_dssp EEEEEETTCCCCC-----C-BGGGGGCGGGTTCEECCCTTSHHHHHHHHHHHHHHC---------------HHHHHHHHH
T ss_pred eEEEEcCccccCC-----C-CHHHHhhHHhCCcEeecCCCcHhHHHHHHHHHHHhC---------------hHHHHHHHH
Confidence 37999999 9974 6 99999999999999987532211 111111222 124667777
Q ss_pred HHhcccccc--cc-hhHHHHhhcCcEEEEEeccccHHHHHh-------cC--CCcEEEec------CCCceeeeeeEEEe
Q 024049 76 LLANQARLF--DS-THYLKAFGIGDVWVAVGWSSDVLPAVK-------RM--SNVAVVVP------KSGASLWADLWAIP 137 (273)
Q Consensus 76 ~l~~~v~~~--~~-~~~~~~~~~Gev~va~~~s~~~~~~~~-------~~--~~v~~~~P------~eG~~~~~d~~~I~ 137 (273)
+++++...+ .+ .+..+.|.+|++.|++.|+.....+.. .+ .++.+++| ++|+..+.++++|+
T Consensus 166 ~l~~~~~~~~~~~~~~~~~~~~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~g~~~~~~~~~i~ 245 (323)
T 1y9u_A 166 GVKANLARKAAGGDRDVARDILGGICDIGLANAYYVGHMKNAEPGTDARKWGDAIKVVRPTFATAKDGGTHVNISGAAVA 245 (323)
T ss_dssp HHHHHBSSCSCSCHHHHHHHHHTTSCSEEEEEHHHHHHHHHSCTTSHHHHHHHTEEEECCBCC----CCBCEEEEEEEEE
T ss_pred HHHHccCcccCCCchHHHHHHhCCcceEEEecHHHHHHHhhccccccccCCCCceeEecCCCCCCCCCCeeeccceEEEE
Confidence 777664322 22 367889999999999998876655443 22 35788889 57888899999999
Q ss_pred cCCCCcccccCCCCCCChHHHHHHHHHHhcHHHhchhhhhhcCCCCCChhhhhccCCChHHhc
Q 024049 138 AASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALETTLVKLPEELLK 200 (273)
Q Consensus 138 k~a~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~~~~~~~~p~~~~~a~~~l~~e~~~ 200 (273)
++++|++ +|++||+||++||.|..+.+ ..++ .|.. . ....++.+..
T Consensus 246 ~~s~~~~------------~A~~fi~fl~s~e~q~~~~~-~~~~-~P~~-~--~~~~~~~~~~ 291 (323)
T 1y9u_A 246 AHAPNKA------------NAVKLLEYLVSEPAQTLYAQ-ANYE-YPVR-A--GVKLDAVVAS 291 (323)
T ss_dssp TTCTTHH------------HHHHHHHHHTSHHHHHHHHH-HTTC-EESS-T--TCCCCHHHHH
T ss_pred cCCCCHH------------HHHHHHHHHcCHHHHHHHHh-cccc-ccCC-C--CCCCCccCCC
Confidence 9999988 99999999999999998874 3333 3431 1 2345666543
No 21
>1nnf_A Iron-utilization periplasmic protein; iron-binding protein, EDTA-Fe-protein complex, metal binding protein; HET: EDT; 1.10A {Haemophilus influenzae} SCOP: c.94.1.1 PDB: 1mrp_A 1d9v_A 3od7_A 3odb_A 1qvs_A 2o6a_A 2o68_A 3kn8_A 3kn7_A 2o69_A 1qw0_A 1o7t_A* 1xc1_A* 1r1n_A* 1d9y_A
Probab=99.71 E-value=7e-17 Score=144.44 Aligned_cols=147 Identities=16% Similarity=0.134 Sum_probs=110.8
Q ss_pred EEEEeCccccccCCCCCCChHHhcCcccCCcEEeeCChHH--HHHHHHHHhCCCCCCCChhhhhhchHHHHHHHHHHHhc
Q 024049 2 VIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPRE--VIGSVLKYMGASYNSNNIDLQVAGGKISVQQNLALLAN 79 (273)
Q Consensus 2 gi~YN~~~v~~~g~~~p~SW~dL~dp~~kGki~~~d~~~~--~~~~al~~~G~~~~~~~~~~~~~~~~~~~~~~L~~l~~ 79 (273)
+|+||+++++++ .+|+||++|++++++|++++.+.... .+..++...|+ ..++.++|.++.+
T Consensus 104 ~l~YNk~~~~~~--~~P~tw~dl~~~~~~g~~~~~~~~~~~~~~~~~~~~~~G--------------~~~a~~~l~~l~~ 167 (309)
T 1nnf_A 104 VVVYDHTKLSEK--DMEKSVLDYATPKWKGKIGYVSTSGAFLEQVVALSKMKG--------------DKVALNWLKGLKE 167 (309)
T ss_dssp EEEEETTTCCGG--GSCSSGGGGGSGGGTTTEEECTTSHHHHHHHHHHHHHHC--------------HHHHHHHHHHHHH
T ss_pred EEEEehhhcccc--CCCCCHHHHhchhhcCeEeecCCCchHHHHHHHHHHhcC--------------hHHHHHHHHHHHH
Confidence 789999999864 37999999999999999998753211 12222222221 1356777888876
Q ss_pred ccccccc-hhHHHHhhcCcEEEEEeccccHHHH-Hh---cCCCcEEEecC---CCceeeeeeEEEecCCCCcccccCCCC
Q 024049 80 QARLFDS-THYLKAFGIGDVWVAVGWSSDVLPA-VK---RMSNVAVVVPK---SGASLWADLWAIPAASRLETKQIGGRV 151 (273)
Q Consensus 80 ~v~~~~~-~~~~~~~~~Gev~va~~~s~~~~~~-~~---~~~~v~~~~P~---eG~~~~~d~~~I~k~a~~~~~~~~~~~ 151 (273)
+...+.+ .+..+.|.+|++.|++.|+..+..+ .. .+.++++++|. +|...+.++++|+++++|++
T Consensus 168 ~~~~~~~~~~~~~~~~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~i~~~s~~~~------- 240 (309)
T 1nnf_A 168 NGKLYAKNSVALQAVENGEVPAALINNYYWYNLAKEKGVENLKSRLYFVRHQDPGALVSYSGAAVLKASKNQA------- 240 (309)
T ss_dssp HEEECSSHHHHHHHHHTTSCSEEEEEHHHHHHHHHHHCGGGCSEEEECCCTTCGGGCEEEEEEEEBTTCSCHH-------
T ss_pred hCCCCCCCchHHHHHhcCCccEEEccHHHHHHHHhcccCCCCceEEeCCCCCCCceeeccccEEEEcCCCCHH-------
Confidence 6544433 4678899999999999998777655 33 35678877643 47788899999999999988
Q ss_pred CCChHHHHHHHHHHhcHHHhchhhh
Q 024049 152 RGPSPLIHQWIEFCLQTARALPFKQ 176 (273)
Q Consensus 152 ~~~~~~A~~FInfllspe~q~~~~~ 176 (273)
+|++||+||++||.|..+..
T Consensus 241 -----aA~~fi~~l~s~e~q~~~~~ 260 (309)
T 1nnf_A 241 -----EAQKFVDFLASKKGQEALVA 260 (309)
T ss_dssp -----HHHHHHHHHHSHHHHHHHHH
T ss_pred -----HHHHHHHHHhCHHHHHHHHh
Confidence 99999999999999999874
No 22
>1sbp_A Sulfate-binding protein; 1.70A {Salmonella typhimurium} SCOP: c.94.1.1
Probab=99.63 E-value=6.3e-16 Score=138.28 Aligned_cols=150 Identities=13% Similarity=0.162 Sum_probs=110.0
Q ss_pred CEEEEeCccccccCCCCCCChHHhcCcccCCcEEeeCChHHHHH-----HHH----HHhCCCCCCCChhhhhhchHHHHH
Q 024049 1 MVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIG-----SVL----KYMGASYNSNNIDLQVAGGKISVQ 71 (273)
Q Consensus 1 ~gi~YN~~~v~~~g~~~p~SW~dL~dp~~kGki~~~d~~~~~~~-----~al----~~~G~~~~~~~~~~~~~~~~~~~~ 71 (273)
++|+||++.. .+|+||+||+++++ ||++.++.....+ .++ ...|.+ .++++
T Consensus 97 ~~l~yn~~~~-----~~p~tw~dL~~~~~--ki~~~~p~~~~~~~~~~~~~~~~~~~~~gg~-------------~~~a~ 156 (310)
T 1sbp_A 97 IVFLVRKGNP-----KQIHDWNDLIKPGV--SVITPNPKSSGGARWNYLAAWGYALHHNNND-------------QAKAE 156 (310)
T ss_dssp EEEEEETTCT-----TCCCSGGGGGSTTC--CEECCCTTTCHHHHHHHHHHHHHHHHHTTTC-------------HHHHH
T ss_pred EEEEEeCCCC-----CCCCCHHHHcCccc--eEecCCCcccchhHHHHHHHHHHHHHHcCCC-------------HHHHH
Confidence 3799999973 27899999999987 7888764222111 111 123431 23677
Q ss_pred HHHHHHhcccccccch---hHHHHhhcCcEEEEEeccccHHHHHhc-C-CCcEEEecCCCceeeeeeEEEecCC----CC
Q 024049 72 QNLALLANQARLFDST---HYLKAFGIGDVWVAVGWSSDVLPAVKR-M-SNVAVVVPKSGASLWADLWAIPAAS----RL 142 (273)
Q Consensus 72 ~~L~~l~~~v~~~~~~---~~~~~~~~Gev~va~~~s~~~~~~~~~-~-~~v~~~~P~eG~~~~~d~~~I~k~a----~~ 142 (273)
+++.++++++..+.++ ...+.+.+|++++++.|+++......+ + .++++++|++|. .+.++++|++++ +|
T Consensus 157 ~~l~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~g~~~~~~v~P~~g~-~~~~~~~i~~~~~~~s~~ 235 (310)
T 1sbp_A 157 DFVKALFKNVEVLDSGARGSTNTFVERGIGDVLIAWENEALLATNELGKDKFEIVTPSESI-LAEPTVSVVDKVVEKKDT 235 (310)
T ss_dssp HHHHHHHHTEEECCSSHHHHHHHHHTSCCCSEEEEEHHHHHHHHHTTTTTTEEEECCSEEE-CBCCEEEECHHHHHHHTC
T ss_pred HHHHHHHhcCcccCCccHHHHHHHHhCCCccEEEeechHHHHHHHhcCCCceEEEccCCce-eccCCeEEeccccccccC
Confidence 8888888876555432 256778899999999999888766555 5 789999998765 456789999987 89
Q ss_pred cccccCCCCCCChHHHHHHHHHHhcHHHhchhhhhhcCCCCCC
Q 024049 143 ETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPS 185 (273)
Q Consensus 143 ~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~~~~~~~~p~ 185 (273)
++ +|++||+||+|||+|..+. +. +|.+++
T Consensus 236 ~~------------~A~~fi~fl~s~e~q~~~~-~~-g~~p~~ 264 (310)
T 1sbp_A 236 KA------------VAEAYLKYLYSPEGQEIAA-KN-FYRPRD 264 (310)
T ss_dssp HH------------HHHHHHHGGGSHHHHHHHH-HT-TCEESC
T ss_pred HH------------HHHHHHHHHcChHHHHHHH-Hc-CCCCCC
Confidence 87 9999999999999998876 33 665444
No 23
>3cg1_A UPF0100 protein PF0080; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.60A {Pyrococcus furiosus} PDB: 3cg3_A
Probab=99.61 E-value=1.6e-15 Score=136.02 Aligned_cols=150 Identities=14% Similarity=0.201 Sum_probs=100.4
Q ss_pred CEEEEeCccccccCC-CCCCChHHhc-CcccCCcEEeeCChHHHHHH----HHHHhCCCCCCCChhhhhhchHHHHHHHH
Q 024049 1 MVIAYKKSKFRKHNL-APIEDWKDLW-RPELAGRISMVNSPREVIGS----VLKYMGASYNSNNIDLQVAGGKISVQQNL 74 (273)
Q Consensus 1 ~gi~YN~~~v~~~g~-~~p~SW~dL~-dp~~kGki~~~d~~~~~~~~----al~~~G~~~~~~~~~~~~~~~~~~~~~~L 74 (273)
++|+||++.....++ .+|+||.||| +|+ +||++.|+.....|. ++...+...+. + .++.|
T Consensus 92 ~vi~~~~~~~~~~~i~~~p~sw~dll~~p~--~~i~~~~p~~~~~G~~~~~~~~~~~~~~~~---~---------~~~~l 157 (296)
T 3cg1_A 92 IVIAFTDKSRYVEEMKSNPDKWYEILARED--VRFGFSDPNQDPCGYRSLMVIKLADLYYGK---E---------IFKEL 157 (296)
T ss_dssp EEEEECTTSTTHHHHHHCGGGHHHHHTSTT--CCEEEECTTTCHHHHHHHHHHHHHHHHHTS---C---------HHHHH
T ss_pred EEEEEcCCCchhcccCCCCCCHHHHhcCCC--cEEEeCCCCCCchhHHHHHHHHHHHHhcch---h---------HHHHH
Confidence 478999985211000 1579999988 565 789998854333332 22222110000 1 12233
Q ss_pred HHH------------h-------ccccccc--chhHHHHhhcCcEEEEEeccccHHHHH------------------hcC
Q 024049 75 ALL------------A-------NQARLFD--STHYLKAFGIGDVWVAVGWSSDVLPAV------------------KRM 115 (273)
Q Consensus 75 ~~l------------~-------~~v~~~~--~~~~~~~~~~Gev~va~~~s~~~~~~~------------------~~~ 115 (273)
... . ++...+. ..+..+.+.+||+++++.|.+++.... ..+
T Consensus 158 ~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~Ge~~~~i~~~s~a~~~~~~~~~~p~~~~~~~~~~~~~~ 237 (296)
T 3cg1_A 158 IEENTNIYSNGTQIYAPKEITVNPGKIVIRPKETDLLGLVESGSIDYIFIYKSVAKQHNLSYITLPSEINLGDFSKEKFY 237 (296)
T ss_dssp TTTTBSCEEETTEEEECSSCCBCTTTEEEESSGGGGHHHHHHTSSSEEEEEHHHHHHTTCEEEECCTTTSSCCGGGHHHH
T ss_pred HhcccccccCccccccccccccccccceecCchHHHHHHHhCCCCCEEEEEhhHHHHcCCCeEecChhhccccccccccc
Confidence 211 0 1111222 346789999999999999999887532 245
Q ss_pred CCcEEEecCCC----ceeeeeeEEEecCCCCcccccCCCCCCChHHHHHHHHHHhcHHHhchhhh
Q 024049 116 SNVAVVVPKSG----ASLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQ 176 (273)
Q Consensus 116 ~~v~~~~P~eG----~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~ 176 (273)
.++.+++|++| ...+.++++|+++++|++ +|++|||||+|||+|+.+.+
T Consensus 238 ~~v~~~~p~~g~~~~~~~~~~~~~i~k~a~~~~------------~A~~Fi~fl~s~e~q~~~~~ 290 (296)
T 3cg1_A 238 GQISITLGSTGKTIKAKPIVYGVTVLKDAPNRE------------VAIEFLRYLLSENGKRIFEK 290 (296)
T ss_dssp TTCEEEETTTCCEEECCCCEEEEEECTTCTTHH------------HHHHHHHHHHSHHHHHHHHH
T ss_pred cceeEEecCCcccccCceeeeeEEEeCCCCCHH------------HHHHHHHHHhChHHHHHHHH
Confidence 68999999998 566788999999999988 89999999999999998864
No 24
>3uor_A ABC transporter sugar binding protein; ALFA/beta protein, periplasmic-binding protein, maltose, SUG binding protein; 2.20A {Xanthomonas axonopodis PV}
Probab=99.60 E-value=9.8e-15 Score=138.46 Aligned_cols=239 Identities=12% Similarity=0.083 Sum_probs=146.8
Q ss_pred CEEEEeCccccccCC-CCCCChHHhcCc--cc-----CCcEEee--CChHHHHHHHHHHhCCCCCCCCh-hhhh-hchHH
Q 024049 1 MVIAYKKSKFRKHNL-APIEDWKDLWRP--EL-----AGRISMV--NSPREVIGSVLKYMGASYNSNNI-DLQV-AGGKI 68 (273)
Q Consensus 1 ~gi~YN~~~v~~~g~-~~p~SW~dL~dp--~~-----kGki~~~--d~~~~~~~~al~~~G~~~~~~~~-~~~~-~~~~~ 68 (273)
.+|.||+++|+++|+ .+|+||++|++. ++ .|...+. .+....+...+...|....+.+. ...+ ...+.
T Consensus 145 ~~l~Ynkdl~~~aGl~~~P~Twdel~~~~~~l~~~~g~~~~g~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~ 224 (458)
T 3uor_A 145 RLLFYRKDLLREAGYSQMPKTWAEMEQVMAAIKRKVGPDRYAILMPLNEFEQQLSFALQQDDRLLRDHDNYGNFRGAGFR 224 (458)
T ss_dssp CEEEEEHHHHHHTTCSSCCCBHHHHHHHHHHHHHHHCTTSEEEECCTTCCHHHHHHHHTSSSCSEETTTTEECTTSHHHH
T ss_pred cEEEEeHHHHHHcCCCCCCCCHHHHHHHHHHHhcccCCCceeEecCchhHHHHHHHHHHcCCeEEcCCCCeeecCCHHHH
Confidence 479999999999999 799999999973 33 2444443 22222233344556655321110 0000 01245
Q ss_pred HHHHHHHHHhcc--cc-ccc--chhHHHHhhcCcEEEEEeccccHHHHHhcCC-----CcEEE-ecC----CCceeeeee
Q 024049 69 SVQQNLALLANQ--AR-LFD--STHYLKAFGIGDVWVAVGWSSDVLPAVKRMS-----NVAVV-VPK----SGASLWADL 133 (273)
Q Consensus 69 ~~~~~L~~l~~~--v~-~~~--~~~~~~~~~~Gev~va~~~s~~~~~~~~~~~-----~v~~~-~P~----eG~~~~~d~ 133 (273)
++.+++.++... +. ... .++..+.|.+|++.|.+.++.....+...++ +++++ +|. .+...+.++
T Consensus 225 ~al~~~~~l~~~g~~~~~~~~~~~~~~~~f~~G~~am~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~ 304 (458)
T 3uor_A 225 KALGFYDNMYQQGWAPKVSETQVSNVWYEFFNGYYAFYLSGPWNVREFKLRQPPGMEGNWGTAPLPGPNGLGAGIAGGSS 304 (458)
T ss_dssp HHHHHHHHHHHTTSSCCCCGGGSSCHHHHHHHTSEEEEEECTHHHHHHHHHCCGGGTTSEEEECCBBSSSBCCCBCEEEE
T ss_pred HHHHHHHHHHHcCCCCCcccccchHHHHHHhcCCEEEEEcCcchHHHHhhhCcccccceEEEEeCCCCCCCCccccCceE
Confidence 677777777642 11 111 2346889999999999988877666555443 67876 776 456778889
Q ss_pred EEEecCCCCcccccCCCCCCChHHHHHHHHHHhcHHHhchhhhhhcCCCCCChhhhhccCCChHHhcCCCCCCCCcccCC
Q 024049 134 WAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALETTLVKLPEELLKGKPSQDTNLIVGV 213 (273)
Q Consensus 134 ~~I~k~a~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~~~~~~~~p~~~~~a~~~l~~e~~~~~~~~~~~l~~~~ 213 (273)
++|+++++|++ +|.+||+||++||.|..+.. ..++.+++. .+. -++++..++ .+ -
T Consensus 305 ~~I~~~s~~~e------------aA~~fl~~l~s~e~q~~~~~-~~g~~P~~~--~~~--~~~~~~~~~-----~~---~ 359 (458)
T 3uor_A 305 LVIFKSSQHKD------------ASWKLIEYLSQPQVQARFHA-IIGDLPPRR--STW--KLPSLANDA-----LA---H 359 (458)
T ss_dssp EEEBTTCSCHH------------HHHHHHHHHTSHHHHHHHHH-HHCCBCSBH--HHH--HSHHHHTCT-----TT---H
T ss_pred EEEECCCCCHH------------HHHHHHHHHcCHHHHHHHHH-hcCCCCCcH--HHh--hChhhccCh-----HH---H
Confidence 99999999998 99999999999999999875 345544442 221 133444322 11 1
Q ss_pred CCHHHHhhceeccCCC--HHHHHHHHHHHHHhh--CCC-cchHHHHHHHHHHHHHH
Q 024049 214 PPAEILARCEFLEPLS--EATLSDYEWLVADLQ--KPA-PVLMKRVQHYLSSLIQS 264 (273)
Q Consensus 214 p~~~~l~~~~~~~~~~--~~~~~~~~~~W~~ik--~~~-~~~~~~~~~~~~~~~~~ 264 (273)
.-.+.++........+ .+....+.+.++++. ..+ .+.++++|..+.+++++
T Consensus 360 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~G~~t~~~al~~~~~~~~~~l~~ 415 (458)
T 3uor_A 360 AFGDQLERVKATPKVLEWERIVQEMRLVTERVVRGGQSHDAAVQELDQRVDEILAK 415 (458)
T ss_dssp HHHHHTTTCBCCCCCTTHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh
Confidence 1123344443333222 345556666666664 222 45778888877777663
No 25
>3k01_A Acarbose/maltose binding protein GACH; ABC transporter, acarbose-binding protein, transport protein; 1.35A {Streptomyces glaucescens} PDB: 3jzj_A* 3k00_A* 3k02_A*
Probab=99.60 E-value=6.4e-15 Score=137.12 Aligned_cols=238 Identities=11% Similarity=0.067 Sum_probs=144.7
Q ss_pred CEEEEeCccccccCCCCCCChHHhcCc--ccC---CcEEee--CChHHHHHHHHHHhCCCCCCCChh-hhh-hchHHHHH
Q 024049 1 MVIAYKKSKFRKHNLAPIEDWKDLWRP--ELA---GRISMV--NSPREVIGSVLKYMGASYNSNNID-LQV-AGGKISVQ 71 (273)
Q Consensus 1 ~gi~YN~~~v~~~g~~~p~SW~dL~dp--~~k---Gki~~~--d~~~~~~~~al~~~G~~~~~~~~~-~~~-~~~~~~~~ 71 (273)
.+|+||+++++++|+++|+||++|++. +++ |...+. ......+...+...|.+..+.+.. ..+ .....++.
T Consensus 143 ~~l~ynkdl~~~~Gl~~P~Twdel~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~al 222 (412)
T 3k01_A 143 LALFYNKELLTKAGVEVPGSVAELKTAAAEITEKTGATGLYLRGDDPYWFLPYLYGEGGDLVDEKNKTVTVDDEAGVRAY 222 (412)
T ss_dssp CEEEEEHHHHHHHTCCCCSBHHHHHHHHHHHHHHHSCEEEECCCSCGGGGHHHHHHTTCCSEETTTTEECTTSHHHHHHH
T ss_pred eEEEEEHHHHHHcCCCCCCCHHHHHHHHHHHhcccCCCceeeCCcchHHHHHHHHHcCCceECCCCCeeccCCHHHHHHH
Confidence 479999999999999999999999984 333 554422 111222333445667653211100 000 01245677
Q ss_pred HHHHHHhcc--cc-c--ccchhHHHHhhcCcEEEEEeccccHHHHHhc-----CCCcEEE-ecCC----CceeeeeeEEE
Q 024049 72 QNLALLANQ--AR-L--FDSTHYLKAFGIGDVWVAVGWSSDVLPAVKR-----MSNVAVV-VPKS----GASLWADLWAI 136 (273)
Q Consensus 72 ~~L~~l~~~--v~-~--~~~~~~~~~~~~Gev~va~~~s~~~~~~~~~-----~~~v~~~-~P~e----G~~~~~d~~~I 136 (273)
+.+.++... +. . ...++..+.|.+|++.|.+.++......... +.+++++ +|.. +...+.++++|
T Consensus 223 ~~~~~l~~~g~~~~~~~~~~~~~~~~f~~G~~a~~~~g~w~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~I 302 (412)
T 3k01_A 223 RVIKDLVDSKAAITDASDGWNNMQNAFKSGKVAMMVNGPWAIEDVKAGARFKDAGNLGVAPVPAGSAGQGSPQGGWNLSV 302 (412)
T ss_dssp HHHHHHHHTTSEECCSSCHHHHHHHHHHHTSEEEEEECGGGHHHHHTSTTCSSGGGEEEEECCBCSSCCCEEEEEEEEEE
T ss_pred HHHHHHHHcCCCCCCcccchhhHHHHHhcCCEEEEECCccchHhhhhccccCccceeEEEeCCCCCCCCccccCceeEEE
Confidence 777777653 11 1 1224577899999999999876666554432 2247776 5641 25777889999
Q ss_pred ecCCCCcccccCCCCCCChHHHHHHHHHHhcHHHhchhhhhhcCCCCCChhhhhccCCChHHhcCCCCCCCCcccCCC-C
Q 024049 137 PAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALETTLVKLPEELLKGKPSQDTNLIVGVP-P 215 (273)
Q Consensus 137 ~k~a~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~~~~~~~~p~~~~~a~~~l~~e~~~~~~~~~~~l~~~~p-~ 215 (273)
+++++|++ +|.+||+||++||.|..+... .++.+++ ..+. ++++..++ .+ .. -
T Consensus 303 ~~~s~~~e------------~A~~fl~~l~s~e~q~~~~~~-~g~~P~~--~~~~---~~~~~~~~-----~~---~~~~ 356 (412)
T 3k01_A 303 YAGSKNLD------------ASYAFVKYMSSAKVQQQTTEK-LSLLPTR--TSVY---EVPSVADN-----EM---VKFF 356 (412)
T ss_dssp BTTCSCHH------------HHHHHHHHHHSHHHHHHHHHH-HCCCBSB--GGGG---GSHHHHTC-----HH---HHHH
T ss_pred eCCCCCHH------------HHHHHHHHHcCHHHHHHHHHh-cCCCCcc--hhhc---ChhhhhCc-----hh---HHHH
Confidence 99999998 999999999999999998853 4544333 2222 44444432 11 00 1
Q ss_pred HHHHhhceeccCC--CHHHHHHHHHHHHHhhCC--C-cchHHHHHHHHHHHHHH
Q 024049 216 AEILARCEFLEPL--SEATLSDYEWLVADLQKP--A-PVLMKRVQHYLSSLIQS 264 (273)
Q Consensus 216 ~~~l~~~~~~~~~--~~~~~~~~~~~W~~ik~~--~-~~~~~~~~~~~~~~~~~ 264 (273)
.+.++........ ..+....+.+.++++..- + .+.++++|..+.+++++
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~al~~~~~~~~~~l~~ 410 (412)
T 3k01_A 357 KPAVDKAVERPWIAEGNALFEPIRLQMANVLSGETSPDEAAANTGDAYRKLLKD 410 (412)
T ss_dssp HHHHTTEECCCCSTTGGGGHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHhcccCCCCCchHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 2334433332222 245567777788887633 2 45677777777666554
No 26
>3quf_A Extracellular solute-binding protein, family 1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Bifidobacterium longum subsp}
Probab=99.56 E-value=1.6e-14 Score=134.27 Aligned_cols=232 Identities=11% Similarity=0.052 Sum_probs=139.0
Q ss_pred EEEEeCccccccCCC-CCCChHHhcCc--cc--CCcEEeeCC----hHHHHHHHHHHhC--CCCCC-C-----Chhhhhh
Q 024049 2 VIAYKKSKFRKHNLA-PIEDWKDLWRP--EL--AGRISMVNS----PREVIGSVLKYMG--ASYNS-N-----NIDLQVA 64 (273)
Q Consensus 2 gi~YN~~~v~~~g~~-~p~SW~dL~dp--~~--kGki~~~d~----~~~~~~~al~~~G--~~~~~-~-----~~~~~~~ 64 (273)
+|+||+++++++|++ +|+||++|++. ++ +|...+... +...+...+...| ...+. . +....+.
T Consensus 140 ~l~ynkdl~~~~G~~~~P~Twdel~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 219 (414)
T 3quf_A 140 AFFYNKDILKKAGYDKFPKTWDEFIEMGKKINSNGSTAFLEDFNTQIAGSFTGLLASYYGEQGKSGDLDADIWSGKSTFT 219 (414)
T ss_dssp EEEEEHHHHHHTTCSSCCSBHHHHHHHHHHHHHTTSEEECCCCSSSSCHHHHHHHHHHHHTTTCCSSTTHHHHTTSSCHH
T ss_pred EEEEeHHHHHhcCCCCCCCCHHHHHHHHHHHHHcCCCCeeccccccchHHHHHHHHHhhccccCchhHHHHHhcCCcccC
Confidence 789999999999998 99999999974 33 365555432 1122222222222 11100 0 0000011
Q ss_pred chHHHHHHHHHHHhcc--c----ccccchhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEE-ecC--CC-----ceee
Q 024049 65 GGKISVQQNLALLANQ--A----RLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV-VPK--SG-----ASLW 130 (273)
Q Consensus 65 ~~~~~~~~~L~~l~~~--v----~~~~~~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~-~P~--eG-----~~~~ 130 (273)
....++.+.+.++.+. + ..+..++..+.|.+|++.|.+.++.........+.+++++ +|. +| ...+
T Consensus 220 ~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~ 299 (414)
T 3quf_A 220 KDWTPVFKRWEAAAKAGVIPQKSVGLSADQVKQEFVSGNLGVMRSGPWDLPDLQKSDIDFGVAPFPAYSKEDGQWINGGP 299 (414)
T ss_dssp HHTHHHHHHHHHHHHTTSSCGGGTTCCHHHHHHHHHTTCEEEEEECGGGHHHHHHSSCCEEEECBCBSSCTTCCBEEEEE
T ss_pred hHHHHHHHHHHHHHhCCCCCCCccCCCHHHHHHHHHcCCceEEEcCcccHHHHhhhccceeEEecCCcCCCCccceeccc
Confidence 1234666777766542 1 1122346789999999999999888887777777888887 674 34 2345
Q ss_pred eeeEEEecCCC--CcccccCCCCCCChHHHHHHHHHHhcHHHhchhhhhhcCCCCCChhhhhccCCChHHhcCCCCCCCC
Q 024049 131 ADLWAIPAASR--LETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALETTLVKLPEELLKGKPSQDTN 208 (273)
Q Consensus 131 ~d~~~I~k~a~--~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~~~~~~~~p~~~~~a~~~l~~e~~~~~~~~~~~ 208 (273)
..+++|+++++ |++ +|.+||+||++||.|..+.+ ..++.+++ ..+....++.+...
T Consensus 300 ~~~~~I~~~s~~~~~e------------~A~~fl~~l~s~e~~~~~~~-~~g~~P~~--~~~~~~~~~~~~~~------- 357 (414)
T 3quf_A 300 DQGFAIASRASDKEKA------------AAKKFLAYLNSEEGLEAFTS-AAGTLSLS--SKYNAEPPAELKDV------- 357 (414)
T ss_dssp SCEEEEBSSSCHHHHH------------HHHHHHHHHTSHHHHHHHHH-HHTCEECB--TTCCCCCCGGGHHH-------
T ss_pred CccEEEECCCCccCHH------------HHHHHHHHHcCHHHHHHHHH-hcCCCCCc--cCcccCchHHHHHH-------
Confidence 56899999999 988 99999999999999999985 34554443 23333334433321
Q ss_pred cccCCCCHHHHhhc----eeccCCCHHHHHHHHHHHHHhhCCC---cchHHHHHHHHHHH
Q 024049 209 LIVGVPPAEILARC----EFLEPLSEATLSDYEWLVADLQKPA---PVLMKRVQHYLSSL 261 (273)
Q Consensus 209 l~~~~p~~~~l~~~----~~~~~~~~~~~~~~~~~W~~ik~~~---~~~~~~~~~~~~~~ 261 (273)
+ .+.+... ..+...+......+.+.++++..-. .+.+++++..+.++
T Consensus 358 ----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~t~e~al~~~~~~~~~i 411 (414)
T 3quf_A 358 ----V--DNYFKQNKFYWVNWPKSPTVMSTEGIAQQQKIVQGQISAKDAAKALDAKWATL 411 (414)
T ss_dssp ----H--HHTTTTTCEECCCCSSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTTC
T ss_pred ----H--HHHHhcCCEEeeeccccchHHHHHHHHHhHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 0 0111111 1233334555667777788876332 44566666655444
No 27
>2gha_A Maltose ABC transporter, periplasmic maltose-BIND protein; periplasmic binding protein, MBP, maltotriose; HET: MLR; 1.60A {Thermotoga maritima} PDB: 2ghb_A 2fnc_A*
Probab=99.54 E-value=9.1e-14 Score=128.21 Aligned_cols=167 Identities=13% Similarity=0.130 Sum_probs=111.8
Q ss_pred CEEEEeCccccccCCCCCCChHHhcC--cccC-----CcEEeeCChHHHH--HHHHHHhCCCCCC-CCh-----hhhh-h
Q 024049 1 MVIAYKKSKFRKHNLAPIEDWKDLWR--PELA-----GRISMVNSPREVI--GSVLKYMGASYNS-NNI-----DLQV-A 64 (273)
Q Consensus 1 ~gi~YN~~~v~~~g~~~p~SW~dL~d--p~~k-----Gki~~~d~~~~~~--~~al~~~G~~~~~-~~~-----~~~~-~ 64 (273)
.++.||+++|++ +|+||++|++ ++++ |++.+..+....+ ...+...|..... .+. ...+ .
T Consensus 111 ~~l~YNkdl~~~----~P~Twdel~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~Gg~~~~~~~g~~~~~~~~~~~ 186 (382)
T 2gha_A 111 IALIYNKDYVPE----PPKTMDELIEIAKQIDEEFGGEVRGFITSAAEFYYIAPFIFGYGGYVFKQTEKGLDVNDIGLAN 186 (382)
T ss_dssp CEEEEETTTCSS----CCSBHHHHHHHHHHHHHHTTTSSEEEECCTTCHHHHHHHHHHTTCEEEEEETTEEEEEEEETTS
T ss_pred eEEEEehhhccC----CchhHHHHHHHHHHHhccCCCCeeeEEecCcchHHHHHHHHhCCCeeeccCCCCccccccccCC
Confidence 479999999986 8999999998 4554 6776654332222 1233455653210 000 0000 0
Q ss_pred chHHHHHHHHHHHhcc-c--ccccchhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEE-ecC--CCc----eeeeeeE
Q 024049 65 GGKISVQQNLALLANQ-A--RLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV-VPK--SGA----SLWADLW 134 (273)
Q Consensus 65 ~~~~~~~~~L~~l~~~-v--~~~~~~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~-~P~--eG~----~~~~d~~ 134 (273)
....++.+++.++.+. + .....++..+.|.+|++.|.+.++.........+.+++++ +|. +|. ..+.+++
T Consensus 187 ~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~G~~am~~~g~~~~~~~~~~~~~~~~~~~P~~~~g~~~~~~~~~~~~ 266 (382)
T 2gha_A 187 EGAIKGVKLLKRLVDEGILDPSDNYQIMDSMFREGQAAMIINGPWAIKAYKDAGIDYGVAPIPDLEPGVPARPFVGVQGF 266 (382)
T ss_dssp HHHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTCEEEEEECGGGHHHHHHTTCCEEEECCCBSBTTBCCCCEEEEEEE
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCccEEEcCHHHHHHHHhcCCceEEEeCCCCCCCCCCcccccceEE
Confidence 1245677788777643 1 1122245778899999999888776665555557788887 886 563 4677889
Q ss_pred EEecCCCCcccccCCCCCCChHHHHHHH-HHHhcHHHhchhhhhhcCCCCC
Q 024049 135 AIPAASRLETKQIGGRVRGPSPLIHQWI-EFCLQTARALPFKQEVIPGASP 184 (273)
Q Consensus 135 ~I~k~a~~~~~~~~~~~~~~~~~A~~FI-nfllspe~q~~~~~~~~~~~~p 184 (273)
+|+++++|++ +|.+|| +||++||.|..+.. ..++.++
T Consensus 267 ~i~~~s~~~e------------~A~~fi~~~l~s~e~~~~~~~-~~g~~P~ 304 (382)
T 2gha_A 267 MVNAKSPNKL------------LAIEFLTSFIAKKETMYRIYL-GDPRLPS 304 (382)
T ss_dssp EEBTTCTTHH------------HHHHHHHHTTTSHHHHHHHHH-HSCSEES
T ss_pred EEeCCCCCHH------------HHHHHHHHHhcCHHHHHHHHH-hcCCCCC
Confidence 9999999988 999999 99999999998874 3454433
No 28
>2zyo_A Solute-binding protein; open form, sugar binding protein; HET: GLC; 1.55A {Thermoactinomyces vulgaris} PDB: 2zyk_A* 2zym_A* 2zyn_A* 2dfz_A*
Probab=99.54 E-value=5e-13 Score=123.71 Aligned_cols=234 Identities=10% Similarity=0.088 Sum_probs=138.9
Q ss_pred CEEEEeCccccccCCCCCCChHHhcC--cccC----CcEEeeCChHHHH--HHHHHHhCCCCCCCC------hhhhh-hc
Q 024049 1 MVIAYKKSKFRKHNLAPIEDWKDLWR--PELA----GRISMVNSPREVI--GSVLKYMGASYNSNN------IDLQV-AG 65 (273)
Q Consensus 1 ~gi~YN~~~v~~~g~~~p~SW~dL~d--p~~k----Gki~~~d~~~~~~--~~al~~~G~~~~~~~------~~~~~-~~ 65 (273)
.+|.||+++|++ +|+||++|++ .+++ |+..+.......+ ...+...|......+ ....+ ..
T Consensus 131 ~~l~Ynkdl~~~----~P~Twdel~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 206 (397)
T 2zyo_A 131 VALIYNKKLMGQ----VPATYDELFQYAKANNKPDEQKYGVLFEANNFYYTYFLFAAKGAAVFKEQDGTLDPNEIGLNSP 206 (397)
T ss_dssp CEEEEETTTCSS----CCSBHHHHHHHHHHHCBGGGTBEEEEECTTCHHHHHHHHHHTTCCSEEEETTEEEEEEECTTSH
T ss_pred eEEEEehhhhcC----CCCCHHHHHHHHHHHhcCCCCeeeEEEecCcHHHHHHHHHhcCCeEEccCccCCCcCCcccCCH
Confidence 478999999986 8999999998 4665 6665543222211 223445565431100 00000 01
Q ss_pred hHHHHHHHHHHHhcc--cc-cccchhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEE-ecC-CCc----eeeeeeEEE
Q 024049 66 GKISVQQNLALLANQ--AR-LFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV-VPK-SGA----SLWADLWAI 136 (273)
Q Consensus 66 ~~~~~~~~L~~l~~~--v~-~~~~~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~-~P~-eG~----~~~~d~~~I 136 (273)
...++.+++.++.+. +. ....++..+.|.+|++.|.+.++.....+...+.+++++ +|. +|. .....+++|
T Consensus 207 ~~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~G~~am~~~~~~~~~~~~~~~~~~~~~~~P~~~g~~~~~~~~~~~~~i 286 (397)
T 2zyo_A 207 EAVQGMNEVQKWFTEARLPQSLKADTVNGLFKSGKVAAVINGPWAIKDYQAAGINVGVAPLPKIDGKDAQTFIGVKGWYL 286 (397)
T ss_dssp HHHHHHHHHHHHHHTSCCCTTCCHHHHHHHHHTTCEEEEEECGGGHHHHHHTTCCEEEECCCBBTTBCCCCEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCCCCChHHHHHHHhcCCeeEEEcCCccHHHHHhcCcceEEEecCCCCCCCCcceecceEEEE
Confidence 245677777777642 11 112245678999999999998877666665556788887 786 452 455678999
Q ss_pred ecCCCCcccccCCCCCCChHHHHHHHHHHhcHHHhchhhhhhcCCCCCChhhhhccCCChHHhcCCCCCCCCcccCCCCH
Q 024049 137 PAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALETTLVKLPEELLKGKPSQDTNLIVGVPPA 216 (273)
Q Consensus 137 ~k~a~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~~~~~~~~p~~~~~a~~~l~~e~~~~~~~~~~~l~~~~p~~ 216 (273)
+++++|++ +|.+||+||+++|.|..+... .++.+++ ..+.. ++++..++ .+ -.-.
T Consensus 287 ~~~s~~~e------------~A~~fi~~l~s~e~~~~~~~~-~g~~P~~--~~~~~--~~~~~~~p-----~~---~~~~ 341 (397)
T 2zyo_A 287 SAYSKYPK------------YATELMQFLTSKEALASRFKE-TGEIPPQ--KELLN--DPMIKNNP-----VV---NGFA 341 (397)
T ss_dssp ETTCSCHH------------HHHHHHHHTTSHHHHHHHHHH-HCCBCCB--HHHHT--SHHHHTCT-----TT---HHHH
T ss_pred eCCCCCHH------------HHHHHHHHHcCHHHHHHHHHH-cCCCCCc--hhhhc--chhhccCH-----HH---HHHH
Confidence 99999988 999999999999999988753 3544333 22221 23333321 10 0012
Q ss_pred HHHhhceeccCCC--HHHHHHHHHHHHHhhCC--C-cchHHHHHHHHHHHHH
Q 024049 217 EILARCEFLEPLS--EATLSDYEWLVADLQKP--A-PVLMKRVQHYLSSLIQ 263 (273)
Q Consensus 217 ~~l~~~~~~~~~~--~~~~~~~~~~W~~ik~~--~-~~~~~~~~~~~~~~~~ 263 (273)
+.++........+ .+....+...++++... + .+.+++++..+.++++
T Consensus 342 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~al~~~~~~~~~~l~ 393 (397)
T 2zyo_A 342 KQASKGVPMPSIPEMGVVWEPINNAHTFVAQGKQTPEQALNDAVKIMKEKIQ 393 (397)
T ss_dssp HHHTTCEECCCSGGGGGTHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHhhCCcCCCCccHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 3333333332221 23445666667766532 2 4566777766666554
No 29
>4dxb_A RG13, maltose-binding periplasmic protein, beta-lactama chimera; TEM, beta-lactamase, MBP, allosteric regulation, zinc bindin maltose binding; 2.29A {Escherichia coli} PDB: 4dxc_A
Probab=99.52 E-value=5.6e-14 Score=139.46 Aligned_cols=161 Identities=18% Similarity=0.174 Sum_probs=109.2
Q ss_pred CEEEEeCccccccCCCCCCChHHhcCc--cc--CCc--EEee-CChHHHHHHHHHHhCCCC-C------------CCChh
Q 024049 1 MVIAYKKSKFRKHNLAPIEDWKDLWRP--EL--AGR--ISMV-NSPREVIGSVLKYMGASY-N------------SNNID 60 (273)
Q Consensus 1 ~gi~YN~~~v~~~g~~~p~SW~dL~dp--~~--kGk--i~~~-d~~~~~~~~al~~~G~~~-~------------~~~~~ 60 (273)
.+|+||+++|++ +|+||++|++. ++ +|. +.+. ....... ..+...|... . ..++
T Consensus 113 ~~l~YNkdlf~e----~P~TwdEl~~~a~klk~~~~~~~~~~~~~~~~~~-~~~~~~gg~~~~~~~~~~~~~~~~~~~~- 186 (637)
T 4dxb_A 113 LSLIYNKDLLPN----PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTW-PLIAADGGYAFKYENGKYDIKDVGVDNA- 186 (637)
T ss_dssp CEEEEETTTCSS----CCSBSTTHHHHHHHHHTTTCCSBCCCCSSHHHHH-HHHHHTTCEEEEEETTEEEEEEEESSSH-
T ss_pred EEEEEEcHHhcC----CCCCHHHHHHHHHHhhhcCCCccccCCCcchhhh-HHHHHhcccccccccccccccccccCCH-
Confidence 479999999986 89999999874 22 222 2222 2222222 2333444321 0 0122
Q ss_pred hhhhchHHHHHHHHHHHhccc-cc--ccchhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEE-ecC-----CCceeee
Q 024049 61 LQVAGGKISVQQNLALLANQA-RL--FDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV-VPK-----SGASLWA 131 (273)
Q Consensus 61 ~~~~~~~~~~~~~L~~l~~~v-~~--~~~~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~-~P~-----eG~~~~~ 131 (273)
...++.+++.++.+.- .. ...++..+.|.+|++.|.+.++.....+...+.+++++ +|. .++..+.
T Consensus 187 -----~~~~al~~l~~l~~~g~~~~~~~~~~~~~~F~~Gk~am~~~g~w~~~~~~~~~~~~gv~~lP~~~g~~~~~~~g~ 261 (637)
T 4dxb_A 187 -----GAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGV 261 (637)
T ss_dssp -----HHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTCCSEEEECGGGHHHHHHHTCCEEEECCCBBTTBCCCCEEEE
T ss_pred -----HHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHcCCEEEEEeCHHHHHHHHhcCCCeEEEEcCCCCCCCCceEeee
Confidence 2456777777776431 11 12245678999999999999888777777778888876 673 3456788
Q ss_pred eeEEEecCCCCcccccCCCCCCChHHHHHHHH-HHhcHHHhchhhhhhcCCCCCC
Q 024049 132 DLWAIPAASRLETKQIGGRVRGPSPLIHQWIE-FCLQTARALPFKQEVIPGASPS 185 (273)
Q Consensus 132 d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FIn-fllspe~q~~~~~~~~~~~~p~ 185 (273)
++++|+++|+|++ +|++||+ ||++||+|..+.+ ..++.+|+
T Consensus 262 ~~~~I~~~Skn~e------------aA~~Fl~~fl~s~E~q~~~~~-~~g~~p~~ 303 (637)
T 4dxb_A 262 LSAGINAASPNKE------------LAKEFLENYLLTDEGLEAVNK-DKPLGAVA 303 (637)
T ss_dssp EEEEEBTTCSCHH------------HHHHHHHHTTSSHHHHHHHHH-HSCCSEES
T ss_pred eEEEEECCCCCHH------------HHHHHHHHHhCCHHHHHHHHH-hCCCCCCc
Confidence 8999999999998 9999995 9999999999985 45665554
No 30
>1elj_A Maltodextrin-binding protein; protein-carbohydrate complex, maltose binding protein, MBP fold, ABC transporter fold, thermophilic protein; HET: CME GLC; 1.85A {Pyrococcus furiosus} SCOP: c.94.1.1
Probab=99.49 E-value=1.2e-12 Score=120.54 Aligned_cols=167 Identities=13% Similarity=0.055 Sum_probs=105.6
Q ss_pred CEEEEeCccccccCCCCCCChHHhcCc--ccC----CcEEeeCCh-HHHHHHHHHHhCCCCCCCC---hhhhhhchHHHH
Q 024049 1 MVIAYKKSKFRKHNLAPIEDWKDLWRP--ELA----GRISMVNSP-REVIGSVLKYMGASYNSNN---IDLQVAGGKISV 70 (273)
Q Consensus 1 ~gi~YN~~~v~~~g~~~p~SW~dL~dp--~~k----Gki~~~d~~-~~~~~~al~~~G~~~~~~~---~~~~~~~~~~~~ 70 (273)
.+|.||+++|++ +|+||++|++- +++ +++++.... ...+...+...|+.....+ ..+. .....++
T Consensus 118 ~~l~YNkdlf~~----~P~Twdel~~~a~~l~~~~~~~~g~~~~~~~~~~~~~~~~~Gg~~~~~~~~~~~~~-~~~~~~a 192 (381)
T 1elj_A 118 VAIIYNKEMVSE----PPKTFDEMKAIMEKYYDPANEKYGIAWPINAYFISAIAQAFGGYYFDDKTEQPGLD-KPETIEG 192 (381)
T ss_dssp CEEEEETTTCSS----CCSSHHHHHHHHHHHCBGGGTBCSCBCCCSHHHHHHHHTTTSCCSEETTTTEECTT-SHHHHHH
T ss_pred eEEEEehHhhcc----CcccHHHHHHHHHHhcCCCCCeEEEEccCchHHHHHHHHhcCCeeecCCCCccCCC-CHHHHHH
Confidence 478999999986 89999999862 222 234432221 1111122334454321100 0000 0123466
Q ss_pred HHHHHHHhcc-ccc-ccchhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEE-ecC---CC------ceeeeeeEEEec
Q 024049 71 QQNLALLANQ-ARL-FDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV-VPK---SG------ASLWADLWAIPA 138 (273)
Q Consensus 71 ~~~L~~l~~~-v~~-~~~~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~-~P~---eG------~~~~~d~~~I~k 138 (273)
.+++.++... ... ...++..+.|.+|++.|.+.++.....+...+.+++++ +|. +| ...+.++++|++
T Consensus 193 l~~~~~l~~~~~~~~~~~~~~~~~f~~G~~am~~~g~w~~~~~~~~~~~~g~~~~P~~~~~g~~~~~~~~~g~~~~~i~~ 272 (381)
T 1elj_A 193 FKFFFTEIWPYMAPTGDYNTQQSIFLEGRAPMMVNGPWSINDVKKAGINFGVVPLPPIIKDGKEYWPRPYGGVKLIYFAA 272 (381)
T ss_dssp HHHHHHHTGGGSCSCCCHHHHHHHHHTTSSSEEEECGGGHHHHHHTTCCEEEECCCCEEETTEEECCCCEEEEEEEEEBT
T ss_pred HHHHHHHhhccCCCCCChhHHHHHHhcCCeeEEecCchhhhHHHhcCCceeEEeCCCcCCCCccCCCCccccceEEEEEC
Confidence 7777777532 111 12235668899999999887766665555557789887 784 45 445677899999
Q ss_pred CCCCcccccCCCCCCChHHHHHHHHHHhc-HHHhchhhhhhcCCCCCC
Q 024049 139 ASRLETKQIGGRVRGPSPLIHQWIEFCLQ-TARALPFKQEVIPGASPS 185 (273)
Q Consensus 139 ~a~~~~~~~~~~~~~~~~~A~~FInflls-pe~q~~~~~~~~~~~~p~ 185 (273)
+++|++ +|.+||+||++ ||.|..+.. ..++.+++
T Consensus 273 ~s~~~e------------~A~~fi~~l~~~~e~~~~~~~-~~g~~P~~ 307 (381)
T 1elj_A 273 GIKNKD------------AAWKFAKWLTTSEESIKTLAL-ELGYIPVL 307 (381)
T ss_dssp TCSCHH------------HHHHHHHHHHHCHHHHHHHHH-HHCCBCCB
T ss_pred CCCCHH------------HHHHHHHHHhcCHHHHHHHHH-hcCCCCCc
Confidence 999988 99999999999 999998874 34554443
No 31
>4hw8_A Bacterial extracellular solute-binding protein, P; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MAL; 2.25A {Staphylococcus aureus subsp} PDB: 4hs7_A*
Probab=99.47 E-value=1.7e-12 Score=121.16 Aligned_cols=230 Identities=9% Similarity=0.036 Sum_probs=139.3
Q ss_pred CEEEEeCccccccCCCCCCChHHhcCc--ccC----CcEEeeCCh--HHHHHHHHHHhCCCCCCCC-h-------hhhhh
Q 024049 1 MVIAYKKSKFRKHNLAPIEDWKDLWRP--ELA----GRISMVNSP--REVIGSVLKYMGASYNSNN-I-------DLQVA 64 (273)
Q Consensus 1 ~gi~YN~~~v~~~g~~~p~SW~dL~dp--~~k----Gki~~~d~~--~~~~~~al~~~G~~~~~~~-~-------~~~~~ 64 (273)
.+|+||+++|++ .|+||++|++. +++ ++..+.... ...+...+...|......+ . .+. .
T Consensus 151 ~~l~Ynkdl~~~----~P~Twdel~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~ 225 (420)
T 4hw8_A 151 TALFYNKKLVKN----APQTLEEVEANAAKLTDSKKKQYGMLFDAKNFYFNYPFLFGNDDYIFKKNGSEYDIHQLGLN-S 225 (420)
T ss_dssp CEEEEETTTCCS----CCCBHHHHHHHHHHHCBTTTTBEEEECCTTSHHHHHHHHCCTTCCSEEESSSSEEEEEECTT-C
T ss_pred eEEEEEhhhhhh----CCCCHHHHHHHHHHHhccCCceeEEEecCccHHHHHHHHHhcCCceeccCCCcccccccccC-C
Confidence 479999999997 49999999974 332 335443322 2222233334454321110 0 000 0
Q ss_pred chHHHHHHHHHHHhcc--cc-cccchhHHHHhhcCcEEEEEeccccHHHHHhc-CCCcEEE-ecCC-----CceeeeeeE
Q 024049 65 GGKISVQQNLALLANQ--AR-LFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKR-MSNVAVV-VPKS-----GASLWADLW 134 (273)
Q Consensus 65 ~~~~~~~~~L~~l~~~--v~-~~~~~~~~~~~~~Gev~va~~~s~~~~~~~~~-~~~v~~~-~P~e-----G~~~~~d~~ 134 (273)
....++.+++.++... +. ....++..+.|.+|++.|.+.++.....+... +.+++++ +|.. +.....+++
T Consensus 226 ~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~~~g~~~~~~~~~~~~ 305 (420)
T 4hw8_A 226 KHVVKNAERLQKWYDKGYLPKAATHDVMIGLFKEGKVGQFVTGPWNINEYQETFGKDLGVTTLPTDGGKPMKPFLGVRGW 305 (420)
T ss_dssp HHHHHHHHHHHHHHHTTSSCSSCCHHHHHHHHHTTCEEEEEECSTTHHHHHHHHGGGEEEECCCEETTEECCCEEEEEEE
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCCcchHHHHhhcCceEEEEeCCccHHHHHhhcCCCeEEEeCCCCCCCCCCcccccceE
Confidence 1245677777777543 11 12234678899999999999988877666555 6778876 5752 245667899
Q ss_pred EEecCCCCcccccCCCCCCChHHHHHHHHHHhcHHHhchhhhhhcCCCCCChhhhhccCCChHHhcCCCCCCCCcccCCC
Q 024049 135 AIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALETTLVKLPEELLKGKPSQDTNLIVGVP 214 (273)
Q Consensus 135 ~I~k~a~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~~~~~~~~p~~~~~a~~~l~~e~~~~~~~~~~~l~~~~p 214 (273)
+|+++++|++ +|.+||+||++||.|..+... .++.+++ ..+. ..++.++. +
T Consensus 306 ~I~~~s~~~e------------~A~~fl~~l~s~e~q~~~~~~-~g~~P~~--~~~~-~~~p~~~~------------~- 356 (420)
T 4hw8_A 306 YLSEYSKHKY------------WAKDLMLYITSKDTLQKYTDE-MSEITGR--VDVK-SSNPNLKV------------F- 356 (420)
T ss_dssp EEETTCSCHH------------HHHHHHHHTTSHHHHHHHHHH-HCCCBSB--TTCC-CSCHHHHH------------H-
T ss_pred EEeCCCCCHH------------HHHHHHHHHhCHHHHHHHHHh-cCCCCCc--hhhh-ccChHHHH------------H-
Confidence 9999999998 999999999999999998753 3554433 2221 23333322 1
Q ss_pred CHHHHhhceeccCCC--HHHHHHHHHHHHHhhCC-C-cchHHHHHHHHHHHHHHH
Q 024049 215 PAEILARCEFLEPLS--EATLSDYEWLVADLQKP-A-PVLMKRVQHYLSSLIQSF 265 (273)
Q Consensus 215 ~~~~l~~~~~~~~~~--~~~~~~~~~~W~~ik~~-~-~~~~~~~~~~~~~~~~~~ 265 (273)
.+.++........+ .+....+.+.++++..- + .+.+++++..+.+++++.
T Consensus 357 -~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~~al~~~~~~~~~~l~~~ 410 (420)
T 4hw8_A 357 -EKQARHAEPMPNIPEMRQVWEPMGNASIFISNGKNPKQALDEATNDITQNIKIL 410 (420)
T ss_dssp -HHHTTSCEECCCSGGGGGTHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHhcCCcCCCCccHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 12233333322221 23445666677776533 3 345777777777777654
No 32
>1urs_A Maltose-binding protein; maltodextrin-binding protein, acidophIle, thermoacidophIle, hyperthermophIle, thermophIle; HET: MLR; 1.45A {Alicyclobacillus acidocaldarius} SCOP: c.94.1.1 PDB: 1urg_A* 1urd_A*
Probab=99.46 E-value=3.7e-13 Score=124.94 Aligned_cols=165 Identities=12% Similarity=0.087 Sum_probs=109.6
Q ss_pred CEEEEeCccccccCCCCCCChHHhcCcccCCcEEeeCChH--HHHHHHHHHhCCCCCCCC------hhhhh-hchHHHHH
Q 024049 1 MVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPR--EVIGSVLKYMGASYNSNN------IDLQV-AGGKISVQ 71 (273)
Q Consensus 1 ~gi~YN~~~v~~~g~~~p~SW~dL~dp~~kGki~~~d~~~--~~~~~al~~~G~~~~~~~------~~~~~-~~~~~~~~ 71 (273)
.+|.||+++|++ +|+||++|++ + +|+..+..... ..+...+...|......+ ....+ .....++.
T Consensus 143 ~~l~YNkdl~~~----~P~Twdel~~-~-~g~~g~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~al 216 (402)
T 1urs_A 143 AAIYYNKKLVPQ----PPQTWAEFVK-D-ANAHGFMYDQANLYFDYAIIGGYGGYVFKDNNGTLDPNNIGLDTPGAVQAY 216 (402)
T ss_dssp CEEEEETTTCSS----CCCSHHHHHH-H-HHHHCEECCTTCHHHHHHHHHHTTCEEEEEETTEEEEEEEESSSHHHHHHH
T ss_pred cEEEEehhhhcc----CCCCHHHHHh-c-cCcceeeecCCChhhHHHHHHhcCCeeecCCccccccCccccCCHHHHHHH
Confidence 479999999986 8999999999 5 56554443221 122233445565321100 00000 01245677
Q ss_pred HHHHHHhcc--ccc--ccchhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEE-ecC--CC----ceeeeeeEEEecCC
Q 024049 72 QNLALLANQ--ARL--FDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV-VPK--SG----ASLWADLWAIPAAS 140 (273)
Q Consensus 72 ~~L~~l~~~--v~~--~~~~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~-~P~--eG----~~~~~d~~~I~k~a 140 (273)
+++.++... +.. ...++..+.|.+|++.|.+.++.........+.+++++ +|. +| ...+.++++|++++
T Consensus 217 ~~~~~l~~~~g~~~~~~~~~~~~~~f~~G~~am~~~g~w~~~~~~~~~~~~~~~~~P~~~~g~~~~~~~~~~~~~i~~~s 296 (402)
T 1urs_A 217 TLMRDMVSKYHWMTPSTNGSIAKAEFLAGKIGMYVSGPWDTADIEKAKIDFGVTPWPTLPNGKHATPFLGVITAFVNKES 296 (402)
T ss_dssp HHHHHHHHTSCSCCTTCCHHHHHHHHHTTCCSEEEECGGGHHHHHHTTCCEEEECCCCCTTSCCCCCEEEEEEEEEBTTC
T ss_pred HHHHHHHHhcCcCCCCCCchhhHHHHhcCCeeEEEcCcchHHHHHhcCCceEEEeCCCCCCCCCccceecceEEEEeCCC
Confidence 777777542 211 12245778999999999998877666665556789987 785 24 34567789999999
Q ss_pred CCcccccCCCCCCChHHHHHHHHHHhcHHHhchhhhhhcCCCCC
Q 024049 141 RLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASP 184 (273)
Q Consensus 141 ~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~~~~~~~~p 184 (273)
+|++ +|.+||+||++||.|..+.. ..++.++
T Consensus 297 ~~~e------------~A~~fl~~l~s~e~~~~~~~-~~g~~P~ 327 (402)
T 1urs_A 297 KTQA------------ADWSLVQALTSAQAQQMYFR-DSQQIPA 327 (402)
T ss_dssp SCHH------------HHHHHHHHHTSHHHHHHHHH-HHCCEES
T ss_pred CCHH------------HHHHHHHHHcCHHHHHHHHh-hcCCCCC
Confidence 9988 99999999999999998875 3354433
No 33
>2xz3_A Maltose ABC transporter periplasmic protein, ENVE glycoprotein; viral protein, viral membrane fusion, hairpin, chimera; HET: MAL; 1.95A {Escherichia coli} PDB: 1mg1_A*
Probab=99.46 E-value=6e-13 Score=127.06 Aligned_cols=167 Identities=18% Similarity=0.184 Sum_probs=111.0
Q ss_pred CEEEEeCccccccCCCCCCChHHhcC--cccC--CcEEeeCChHH--HHHHHHHHhCCCCCC-----CCh-hhhh-hchH
Q 024049 1 MVIAYKKSKFRKHNLAPIEDWKDLWR--PELA--GRISMVNSPRE--VIGSVLKYMGASYNS-----NNI-DLQV-AGGK 67 (273)
Q Consensus 1 ~gi~YN~~~v~~~g~~~p~SW~dL~d--p~~k--Gki~~~d~~~~--~~~~al~~~G~~~~~-----~~~-~~~~-~~~~ 67 (273)
.++.||++++++ +|+||++|++ ++++ |++.+...... .+...+...|..... .+. ...+ ....
T Consensus 114 ~~l~YNkdlf~~----~P~Twdel~~~a~kl~~~G~~g~~~~~~~~~~~~~~~~~~Gg~~~~~~~g~~d~~~~~~~~~~~ 189 (463)
T 2xz3_A 114 LSLIYNKDLLPN----PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGA 189 (463)
T ss_dssp CEEEEETTTCSS----CCSBSTTHHHHHHHHHHTTCEEECCCCSSHHHHHHHHHHTTCEEEEEETTEEEEEEEESSSHHH
T ss_pred eEEEEEhHhhhC----CCCCHHHHHHHHHHHHhCCcceeEecCCccHHHHHHHHHcCCcEeccccccccccccccCCHHH
Confidence 479999999986 8999999998 5555 77666432211 222334455653211 000 0000 0124
Q ss_pred HHHHHHHHHHhcc--cc-cccchhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEE-ecC-CC----ceeeeeeEEEec
Q 024049 68 ISVQQNLALLANQ--AR-LFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV-VPK-SG----ASLWADLWAIPA 138 (273)
Q Consensus 68 ~~~~~~L~~l~~~--v~-~~~~~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~-~P~-eG----~~~~~d~~~I~k 138 (273)
.++.+++.++... +. ....++..+.|.+|++.|.+.++.........+.+++++ +|. +| ...+.++++|++
T Consensus 190 ~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~Gk~am~~~g~w~~~~~~~~~~~~~~~~~P~~~g~~~~~~~~~~~~~I~~ 269 (463)
T 2xz3_A 190 KAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINA 269 (463)
T ss_dssp HHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTCEEEEEECGGGHHHHHHHTCCEEEECCCEETTEECCCEEEEEEEEEBT
T ss_pred HHHHHHHHHHHHcCCCCCCCCcchHHHHHHcCCeeEEecCccchhHHhhcCCCEEEEeCCCCCCCCCcccccceEEEEEC
Confidence 5677778777542 11 112245678999999999888776665555557788887 785 44 355778999999
Q ss_pred CCCCcccccCCCCCCChHHHHHHH-HHHhcHHHhchhhhhhcCCCCC
Q 024049 139 ASRLETKQIGGRVRGPSPLIHQWI-EFCLQTARALPFKQEVIPGASP 184 (273)
Q Consensus 139 ~a~~~~~~~~~~~~~~~~~A~~FI-nfllspe~q~~~~~~~~~~~~p 184 (273)
+++|++ +|.+|| +|+++||.|..+.. ..++.++
T Consensus 270 ~sk~~e------------aA~~Fi~~~l~s~e~q~~~~~-~~g~~P~ 303 (463)
T 2xz3_A 270 ASPNKE------------LAKEFLENYLLTDEGLEAVNK-DKPLGAV 303 (463)
T ss_dssp TCTTHH------------HHHHHHHHTTSSHHHHHHHHH-HSCCCEE
T ss_pred CCCCHH------------HHHHHHHHHhcCHHHHHHHHH-hcCCCCC
Confidence 999998 999999 99999999999874 3454433
No 34
>2vgq_A Maltose-binding periplasmic protein, mitochondrial antiviral-signaling protein; immune system/transport, IPS1/MAVS/VISA/cardif; HET: MTT; 2.1A {Escherichia coli}
Probab=99.45 E-value=1.1e-12 Score=125.27 Aligned_cols=167 Identities=18% Similarity=0.184 Sum_probs=110.7
Q ss_pred CEEEEeCccccccCCCCCCChHHhcC--cccC--CcEEeeCChHH--HHHHHHHHhCCCCCC-----CCh-hhhh-hchH
Q 024049 1 MVIAYKKSKFRKHNLAPIEDWKDLWR--PELA--GRISMVNSPRE--VIGSVLKYMGASYNS-----NNI-DLQV-AGGK 67 (273)
Q Consensus 1 ~gi~YN~~~v~~~g~~~p~SW~dL~d--p~~k--Gki~~~d~~~~--~~~~al~~~G~~~~~-----~~~-~~~~-~~~~ 67 (273)
.+|.||++.|++ +|+||++|++ ++++ |++.+...... .+...+...|..... .+. ...+ ....
T Consensus 128 ~~l~YNkdl~~~----~P~Twdel~~~a~~l~~~g~~g~~~~~~~~~~~~~~~~~~Gg~~~~~~~g~~~~~~~~~~~~~~ 203 (477)
T 2vgq_A 128 LSLIYNKDLLPN----PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGA 203 (477)
T ss_dssp CEEEEETTTCSS----CCSBGGGHHHHHHHHHHTTCEEECCCCSSHHHHHHHHHHTTCEEEEEETTEEEEEEEETTSHHH
T ss_pred eEEEEehHhhcc----CCCCHHHHHHHHHHHHhCCcceeEecCCCchHHHHHHHhcCCeecccccccccccccccCCHHH
Confidence 479999999986 8999999998 5665 77666433211 222334455653211 000 0000 0124
Q ss_pred HHHHHHHHHHhcc--cc-cccchhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEE-ecC-CC----ceeeeeeEEEec
Q 024049 68 ISVQQNLALLANQ--AR-LFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV-VPK-SG----ASLWADLWAIPA 138 (273)
Q Consensus 68 ~~~~~~L~~l~~~--v~-~~~~~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~-~P~-eG----~~~~~d~~~I~k 138 (273)
.++.+++.++... +. ....++..+.|.+|++.|.+.++.........+.+++++ +|. +| ...+..+++|++
T Consensus 204 ~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~G~~am~~~g~w~~~~~~~~~~~~~~~~~P~~~g~~~~~~~~~~~~~I~~ 283 (477)
T 2vgq_A 204 KAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINA 283 (477)
T ss_dssp HHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTSEEEEEECGGGHHHHHHHTCCEEEECCCBBTTBCCCCEEEEEEEEEBT
T ss_pred HHHHHHHHHHHHCCCCCCCCCchHHHHHHHcCCeeEEecCCchHHHHhhcCCCeEEEeCCCCCCCCCcceecceEEEEEC
Confidence 5677777777542 11 112235678999999999888776665555557788887 786 33 345678899999
Q ss_pred CCCCcccccCCCCCCChHHHHHHH-HHHhcHHHhchhhhhhcCCCCC
Q 024049 139 ASRLETKQIGGRVRGPSPLIHQWI-EFCLQTARALPFKQEVIPGASP 184 (273)
Q Consensus 139 ~a~~~~~~~~~~~~~~~~~A~~FI-nfllspe~q~~~~~~~~~~~~p 184 (273)
+++|++ +|.+|| +|+++||.|..+.. ..++.++
T Consensus 284 ~s~~~e------------aA~~fl~~~l~s~e~q~~~~~-~~g~~P~ 317 (477)
T 2vgq_A 284 ASPNKE------------LAKEFLENYLLTDEGLEAVNK-DKPLGAV 317 (477)
T ss_dssp TCSCHH------------HHHHHHHHTTSSHHHHHHHHH-HSCCCEE
T ss_pred CCCCHH------------HHHHHHHHHhcCHHHHHHHHH-hcCCCCC
Confidence 999988 999999 99999999999874 4454433
No 35
>1y4c_A Maltose binding protein fused with designed helical protein; de novo designed helical protein, maltose binding protein fusion, de novo protein; HET: GLC; 1.90A {Escherichia coli}
Probab=99.44 E-value=7e-13 Score=128.12 Aligned_cols=167 Identities=18% Similarity=0.184 Sum_probs=110.6
Q ss_pred CEEEEeCccccccCCCCCCChHHhcC--cccC--CcEEeeCChHH--HHHHHHHHhCCCCCC-----CCh-hhhh-hchH
Q 024049 1 MVIAYKKSKFRKHNLAPIEDWKDLWR--PELA--GRISMVNSPRE--VIGSVLKYMGASYNS-----NNI-DLQV-AGGK 67 (273)
Q Consensus 1 ~gi~YN~~~v~~~g~~~p~SW~dL~d--p~~k--Gki~~~d~~~~--~~~~al~~~G~~~~~-----~~~-~~~~-~~~~ 67 (273)
.+|+||+++|++ +|+||++|++ ++++ |++.+.....+ .+...+...|..... .+. ...+ ....
T Consensus 113 ~~l~YNkdlf~~----~P~TwdEl~~~a~klk~~G~~g~~~~~~~~~~~~~~l~~~Gg~~~~~~~g~~d~~~~~~~~~~~ 188 (494)
T 1y4c_A 113 LSLIYNKDLLPN----PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGA 188 (494)
T ss_dssp CEEEEETTTCSS----CCSBGGGHHHHHHHHHTTTCEEECCCSSSHHHHHHHHHHTTCEEEEEETTEEEEEEEETTSHHH
T ss_pred eEEEEEhHHhhC----CCCCHHHHHHHHHHHHhCCceEEEecCCchHHHHHHHHhcCCceeccccccccccccccCCHHH
Confidence 479999999986 8999999998 4554 77665432211 222233455643211 000 0000 0124
Q ss_pred HHHHHHHHHHhcc--cc-cccchhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEE-ecC-CC----ceeeeeeEEEec
Q 024049 68 ISVQQNLALLANQ--AR-LFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV-VPK-SG----ASLWADLWAIPA 138 (273)
Q Consensus 68 ~~~~~~L~~l~~~--v~-~~~~~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~-~P~-eG----~~~~~d~~~I~k 138 (273)
.++.+++.++... +. ....++..+.|.+|++.|.+.++.........+.+++++ +|. +| ...+.++++|++
T Consensus 189 ~~al~~l~~L~~~g~~~~~~~~~~~~~~f~~Gk~am~~~g~w~~~~~~~~~~~~gv~p~P~~~g~~~~~~~g~~~~~I~~ 268 (494)
T 1y4c_A 189 KAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINA 268 (494)
T ss_dssp HHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTCEEEEEECGGGHHHHHHTTCCEEEECCCBBTTBCCCCEEEEEEEEEBT
T ss_pred HHHHHHHHHHHHCCCCCCCCChhHHHHHHHCCCeEEEEeChhHHHHHHhcCCCEEEEeCCCCCCCCccccccceEEEEEC
Confidence 5677777777542 21 112245678999999999888776665555567788887 786 33 356778999999
Q ss_pred CCCCcccccCCCCCCChHHHHHHH-HHHhcHHHhchhhhhhcCCCCC
Q 024049 139 ASRLETKQIGGRVRGPSPLIHQWI-EFCLQTARALPFKQEVIPGASP 184 (273)
Q Consensus 139 ~a~~~~~~~~~~~~~~~~~A~~FI-nfllspe~q~~~~~~~~~~~~p 184 (273)
+++|++ +|.+|| +||++||.|..+.. ..++.++
T Consensus 269 ~skn~e------------aA~~Fl~~fl~s~e~q~~~~~-~~g~~P~ 302 (494)
T 1y4c_A 269 ASPNKE------------LAKEFLENYLLTDEGLEAVNK-DKPLGAV 302 (494)
T ss_dssp TCSCHH------------HHHHHHHHTTSSHHHHHHHHH-HSCCCEE
T ss_pred CCCCHH------------HHHHHHHHHHcCHHHHHHHHH-HhCCCCC
Confidence 999988 999999 99999999998874 4454433
No 36
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=99.44 E-value=1.9e-12 Score=123.84 Aligned_cols=233 Identities=16% Similarity=0.125 Sum_probs=144.1
Q ss_pred CEEEEeCccccccCCCCCCChHHhcCc--cc--CCcEEeeCCh--HHHHHHHHHHhCCCCCC------------CChhhh
Q 024049 1 MVIAYKKSKFRKHNLAPIEDWKDLWRP--EL--AGRISMVNSP--REVIGSVLKYMGASYNS------------NNIDLQ 62 (273)
Q Consensus 1 ~gi~YN~~~v~~~g~~~p~SW~dL~dp--~~--kGki~~~d~~--~~~~~~al~~~G~~~~~------------~~~~~~ 62 (273)
.+|+||+++|++ +|+||++|++. ++ +|+..+.-.. ...+...+...|..... .+.+
T Consensus 127 ~~l~YNkdl~~~----~P~Twdel~~~a~~l~~~g~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~d~~~~~~~~~-- 200 (471)
T 3mq9_A 127 LSLIYNKDLLPN----PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNA-- 200 (471)
T ss_dssp CEEEEETTTCSS----CCSBGGGHHHHHHHHHTTTCEEECCCCSSHHHHHHHHGGGTCEEEEECSSCEEEEEEESSSH--
T ss_pred eEEEEEhHHhcC----CCCCHHHHHHHHHHHHhCCCceEEecCCchHHHHHHHHhcCCeeeccCCCccccCCcCcCCH--
Confidence 479999999985 89999999984 32 3655443211 11222233344543210 1111
Q ss_pred hhchHHHHHHHHHHHhcc--cc-cccchhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEE-ecCC-----Cceeeeee
Q 024049 63 VAGGKISVQQNLALLANQ--AR-LFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV-VPKS-----GASLWADL 133 (273)
Q Consensus 63 ~~~~~~~~~~~L~~l~~~--v~-~~~~~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~-~P~e-----G~~~~~d~ 133 (273)
...++++++.++... +. ....++..+.|.+|++.|.+.|+.........+.+++++ +|.. +...+..+
T Consensus 201 ---~~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~Gk~am~~~g~w~~~~~~~~~~~~~~~~~P~~~g~~~~~~~g~~~ 277 (471)
T 3mq9_A 201 ---GAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLS 277 (471)
T ss_dssp ---HHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTCEEEEEECGGGHHHHHTTTCCEEEECCCBBTTBCCCCEEEEEE
T ss_pred ---HHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHcCCeEEEEecchhhHHHHhcCCCEEEEECCCCCCCCCcceecceE
Confidence 245677788777653 11 122245788999999999999888877777777788886 5751 24567789
Q ss_pred EEEecCCCCcccccCCCCCCChHHHHHHHH-HHhcHHHhchhhhhhcCCCCCChhhhhccCCChHHhcCCCCCCCCcccC
Q 024049 134 WAIPAASRLETKQIGGRVRGPSPLIHQWIE-FCLQTARALPFKQEVIPGASPSALETTLVKLPEELLKGKPSQDTNLIVG 212 (273)
Q Consensus 134 ~~I~k~a~~~~~~~~~~~~~~~~~A~~FIn-fllspe~q~~~~~~~~~~~~p~~~~~a~~~l~~e~~~~~~~~~~~l~~~ 212 (273)
++|+++++|++ +|.+||+ ||++||.|..+.. ..++..|.. .... +.+.. +|.+
T Consensus 278 ~~I~~~sk~~e------------aA~~Fi~~~l~s~e~q~~~~~-~~~~~~p~~-~~~~----~~~~~-----~p~~--- 331 (471)
T 3mq9_A 278 AGINAASPNKE------------LAKEFLENYLLTDEGLEAVNK-DKPLGAVAL-KSYE----EELAK-----DPRI--- 331 (471)
T ss_dssp EEEBSSCSCHH------------HHHHHHHHTTSSHHHHHHHHH-HSCCCSBSB-HHHH----HHHTT-----SHHH---
T ss_pred EEEECCCCCHH------------HHHHHHHHHhcCHHHHHHHHh-cCCCCCCch-hhHH----Hhhhc-----ChhH---
Confidence 99999999998 9999995 9999999998874 344444542 2211 22221 1111
Q ss_pred CCCHHHHhhceeccCCC--HHHHHHHHHHHHHhhC--CC-cchHHHHHHHHHHHHHHHHhh
Q 024049 213 VPPAEILARCEFLEPLS--EATLSDYEWLVADLQK--PA-PVLMKRVQHYLSSLIQSFLAK 268 (273)
Q Consensus 213 ~p~~~~l~~~~~~~~~~--~~~~~~~~~~W~~ik~--~~-~~~~~~~~~~~~~~~~~~~~~ 268 (273)
..-.+.+.........+ .+....+.+.++++.. .+ .+.+++++..+.+++++..+.
T Consensus 332 ~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~vl~G~~t~eeal~~~~~~i~~~l~~~~~~ 392 (471)
T 3mq9_A 332 AATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDEALKDAQTRITAARDGLRAV 392 (471)
T ss_dssp HHHHHHHHTSEECCCSTTHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCccCCCCccHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhHHH
Confidence 11123444444444333 3444566666776652 23 457788888887777776554
No 37
>2gh9_A Maltose/maltodextrin-binding protein; MBP, maltose binding protein, thermoph protein, periplasmic binding protein, sugar binding protein; HET: MLR; 1.95A {Thermus thermophilus}
Probab=99.44 E-value=6.8e-12 Score=115.74 Aligned_cols=165 Identities=15% Similarity=0.096 Sum_probs=110.0
Q ss_pred CEEEEeCccccccCCCCCCChHHhcCc--ccC--CcEEeeCChHH--HHHHHHHHhCCC-CC--CCCh-----hhhh-hc
Q 024049 1 MVIAYKKSKFRKHNLAPIEDWKDLWRP--ELA--GRISMVNSPRE--VIGSVLKYMGAS-YN--SNNI-----DLQV-AG 65 (273)
Q Consensus 1 ~gi~YN~~~v~~~g~~~p~SW~dL~dp--~~k--Gki~~~d~~~~--~~~~al~~~G~~-~~--~~~~-----~~~~-~~ 65 (273)
.++.||++++++ +|+||++|++. +++ |+..+.....+ .+...+...|.. .- ..+. ...+ ..
T Consensus 115 ~~l~YNkdl~~~----~P~Twdel~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~Gg~~~~~~~~dg~~~~~~~~~~~~ 190 (386)
T 2gh9_A 115 VALIYNKKYVKE----PPRTWEEFLALAQKLTTGATFGFLYNIGDPYFNFGFFKAFGAENVFAKDAKGNLDPTKLLIGGE 190 (386)
T ss_dssp CEEEEETTTCSS----CCSSHHHHHHHHHHHCSSSCEEEECCTTCHHHHHHHHHHHTCSSSEEEETTTEEEEEEESSSHH
T ss_pred eEEEEehhhhcc----CCCCHHHHHHHHHHhhhCCEEEEEeecCchHHHHHHHHHcCCceEeeecccCCccccccccCCH
Confidence 479999999986 89999999985 454 66665433211 122334455654 21 1110 0000 11
Q ss_pred hHHHHHHHHHHH-hcc-c-c-cccchhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEE-ecC-CC------ceeeeee
Q 024049 66 GKISVQQNLALL-ANQ-A-R-LFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV-VPK-SG------ASLWADL 133 (273)
Q Consensus 66 ~~~~~~~~L~~l-~~~-v-~-~~~~~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~-~P~-eG------~~~~~d~ 133 (273)
...++.+++.++ .+. + . ....++..+.|.+|++.|.+.++.........+.+++++ +|. +| ...+.++
T Consensus 191 ~~~~al~~~~~l~~~~g~~~~~~~~~~~~~~f~~G~~am~~~g~w~~~~~~~~~~~~~~~~~P~~~g~~~~~~~~~~~~~ 270 (386)
T 2gh9_A 191 VGEKALQFIKDLRFKYNLVPEGVDYGVADGAFKDGALAMILNGPWALGDYKKAKVDFGIAPFPVPPGAKNPWGPFLGVQG 270 (386)
T ss_dssp HHHHHHHHHHHHHHTSCCSCTTCCHHHHHHHHHHTCEEEEEECGGGHHHHHHTTCCEEEECCCCCTTCSSCCCCEEEEEE
T ss_pred HHHHHHHHHHHHHHhcCcCCCCCChHHHHHHHhCCCeeEEEeCcHHHHHHHhcCCCeEEEecCCCCCCCCcccccccceE
Confidence 245677888877 543 1 1 112245678999999999998777665555557788887 786 33 3456778
Q ss_pred EEEecCCCCcccccCCCCCCChHHHHHHHHHHhcHHHhchhhhhhcCCC
Q 024049 134 WAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQEVIPGA 182 (273)
Q Consensus 134 ~~I~k~a~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~~~~~~~ 182 (273)
++|+++++|++ +|.+||+||++||.|..+.. ..++.
T Consensus 271 ~~i~~~s~~~e------------~A~~fl~~l~s~e~~~~~~~-~~g~~ 306 (386)
T 2gh9_A 271 VVVNAYSKNKT------------QAVNFAKTLVTGRNLVAFNQ-AGGRI 306 (386)
T ss_dssp EEEBTTCTTHH------------HHHHHHHHHTSHHHHHHHHH-HSCCE
T ss_pred EEEECCCCCHH------------HHHHHHHHHhCHHHHHHHHH-hcCCC
Confidence 99999999988 99999999999999998874 34543
No 38
>2b3f_A Glucose-binding protein; protein-carbohydrate complex, periplasmic binding protein, galactose, GBP, sugar binding protein; HET: GAL; 1.56A {Thermus thermophilus HB27} PDB: 2b3b_A*
Probab=99.44 E-value=2.7e-12 Score=119.18 Aligned_cols=165 Identities=11% Similarity=0.123 Sum_probs=107.8
Q ss_pred CEEEEeCccccccCCCCCCChHHhcCc--ccC--Cc-EEeeCCh-H---HHHHHHH-HHhCCC---------CCCCChhh
Q 024049 1 MVIAYKKSKFRKHNLAPIEDWKDLWRP--ELA--GR-ISMVNSP-R---EVIGSVL-KYMGAS---------YNSNNIDL 61 (273)
Q Consensus 1 ~gi~YN~~~v~~~g~~~p~SW~dL~dp--~~k--Gk-i~~~d~~-~---~~~~~al-~~~G~~---------~~~~~~~~ 61 (273)
.++.||+++++++|+++|+||++|++. +++ |+ ..+.-.. . ..+...+ ...|.+ ..-.+++
T Consensus 122 ~~l~Ynkdl~~~aGl~~P~Twdel~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~- 200 (400)
T 2b3f_A 122 NVMWYLPAKLKGWGVNPPRTWDKFLATCQTLKQKGLEAPLALGENWTQQHLWESVALAVLGPDDWNNLWNGKLKFTDPK- 200 (400)
T ss_dssp CEEEECHHHHHHTTCCCCSSHHHHHHHHHHHHHTTCSCCEECCSHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCTTSHH-
T ss_pred ceEEEcHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCcCCeEeCCcchHhHHHHHHHHhhcCHHHHHHHhcCccccCCHH-
Confidence 378999999999999999999999974 443 55 4432211 1 1121112 123321 1112232
Q ss_pred hhhchHHHHHHHHHHHhcccc-cc---cchhHHHHhhcCcEEEEEeccccHHHHHhc-----CCCcEEE-ecC-CCc-ee
Q 024049 62 QVAGGKISVQQNLALLANQAR-LF---DSTHYLKAFGIGDVWVAVGWSSDVLPAVKR-----MSNVAVV-VPK-SGA-SL 129 (273)
Q Consensus 62 ~~~~~~~~~~~~L~~l~~~v~-~~---~~~~~~~~~~~Gev~va~~~s~~~~~~~~~-----~~~v~~~-~P~-eG~-~~ 129 (273)
..++.+++.++...+. .+ ..++..+.|.+|++.|.+.++......... +.+++++ +|. +|. ..
T Consensus 201 -----~~~al~~~~~l~~~~~~~~~~~~~~~~~~~f~~G~~am~~~g~w~~~~~~~~~~~~~~~~~~~~~~P~~~g~~~~ 275 (400)
T 2b3f_A 201 -----AVRAWEVFGRVLDCANKDAAGLSWQQAVDRVVQGKAAFNIMGDWAAGYMTTTLKLKPGTDFAWAPSPGTQGVFMM 275 (400)
T ss_dssp -----HHHHHHHHHHHHTTBCTTGGGCCHHHHHHHHHHTSCSEEECCTHHHHHHHHTTCCCBTTTBEEEECTTCTTEEEE
T ss_pred -----HHHHHHHHHHHHHhcCCCccCCCHHHHHHHHhCCceEEEEeccccHhhhhhhhcCCCCCCeEEEeCCCCCCceec
Confidence 4567788887764332 11 124567899999999988765544444332 4578876 785 453 35
Q ss_pred eeeeEEEecCCCCcccccCCCCCCChHHHHHHHHHHhcHHHhchhhhhhcCCCCC
Q 024049 130 WADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASP 184 (273)
Q Consensus 130 ~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~~~~~~~~p 184 (273)
+.++++|+++++|++ +|.+||+||++||.|..+... .++.++
T Consensus 276 ~~~~~~i~~~s~~~e------------~A~~fi~~l~s~e~q~~~~~~-~g~~P~ 317 (400)
T 2b3f_A 276 LSDSFGLPKGAKNRQ------------NAINWLRLVGSKEGQDTSNPL-KGSIAA 317 (400)
T ss_dssp ECEEECCBTTCTTHH------------HHHHHHHHHTSHHHHHHHHHH-HSCBCS
T ss_pred ccceEEEeCCCCCHH------------HHHHHHHHHcCHHHHHHHHHh-cCCCCc
Confidence 677899999999998 999999999999999988743 354433
No 39
>3oai_A Maltose-binding periplasmic protein, myelin prote; schwann cell membrane protein, immunoglobulin-folding, inter adhesion, tetramer; HET: MAL; 2.10A {Escherichia coli}
Probab=99.42 E-value=1.3e-12 Score=124.29 Aligned_cols=231 Identities=16% Similarity=0.113 Sum_probs=137.6
Q ss_pred CEEEEeCccccccCCCCCCChHHhcCc--cc--CCcEEeeCC--hHHHHHHHHHHhCCCCCC------------CChhhh
Q 024049 1 MVIAYKKSKFRKHNLAPIEDWKDLWRP--EL--AGRISMVNS--PREVIGSVLKYMGASYNS------------NNIDLQ 62 (273)
Q Consensus 1 ~gi~YN~~~v~~~g~~~p~SW~dL~dp--~~--kGki~~~d~--~~~~~~~al~~~G~~~~~------------~~~~~~ 62 (273)
.++.||++++++ +|+||++|++. ++ +|+..+.-. ....+...+...|..... .+.+
T Consensus 113 ~~l~ynkdl~~~----~P~Twdel~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~-- 186 (507)
T 3oai_A 113 LSLIYNKDLLPN----PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNA-- 186 (507)
T ss_dssp CEEEEETTTCSS----CCSBSTTHHHHHHHHHTTTCEEECCCCSSHHHHHHHHHHTTCEEEEEETTEEEEEEEESSSH--
T ss_pred eEEEEehHhhcc----CcCCHHHHHHHHHHHHhCCCceEEeecCchHHHHHHHHhcCCeeecccCCCcCccccccCCH--
Confidence 479999999985 89999999985 22 465544321 111222334455653211 1111
Q ss_pred hhchHHHHHHHHHHHhcc--cc-cccchhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEE-ecC-----CCceeeeee
Q 024049 63 VAGGKISVQQNLALLANQ--AR-LFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV-VPK-----SGASLWADL 133 (273)
Q Consensus 63 ~~~~~~~~~~~L~~l~~~--v~-~~~~~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~-~P~-----eG~~~~~d~ 133 (273)
...++.+++.++.+. +. ....++..+.|.+|++.|.+.++.........+.+++++ +|. .+...+.++
T Consensus 187 ---~~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~ 263 (507)
T 3oai_A 187 ---GAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLS 263 (507)
T ss_dssp ---HHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTCEEEEEECGGGHHHHHHHCCCEEEECCCBBTTBCCCCEEEEEE
T ss_pred ---HHHHHHHHHHHHHHcCCCCCCcchhHHHHHHhcCCeEEEeccccccChhhhcCCceeEEeCCCCCCCCCCccccceE
Confidence 245677777777653 11 122246789999999999999888877777778888887 575 224667789
Q ss_pred EEEecCCCCcccccCCCCCCChHHHHHHHH-HHhcHHHhchhhhhhcCCCCCChhhhhccCCChHHhcCCCCCCCCcccC
Q 024049 134 WAIPAASRLETKQIGGRVRGPSPLIHQWIE-FCLQTARALPFKQEVIPGASPSALETTLVKLPEELLKGKPSQDTNLIVG 212 (273)
Q Consensus 134 ~~I~k~a~~~~~~~~~~~~~~~~~A~~FIn-fllspe~q~~~~~~~~~~~~p~~~~~a~~~l~~e~~~~~~~~~~~l~~~ 212 (273)
++|+++++|++ +|.+||+ ||+++|.|..+.. ..++..|.. .... +.+.+ +|.+
T Consensus 264 ~~i~~~s~~~e------------~A~~fl~~~l~s~e~~~~~~~-~~~~~~p~~-~~~~----~~~~~-----~p~~--- 317 (507)
T 3oai_A 264 AGINAASPNKE------------LAKEFLENYLLTDEGLEAVNK-DKPLGAVAL-KSYE----EELAK-----DPRI--- 317 (507)
T ss_dssp EEEBTTCTTHH------------HHHHHHHHTTSSHHHHHHHHH-HSCCSEESB-HHHH----HHHTT-----CHHH---
T ss_pred EEEECCCCCHH------------HHHHHHHHHhcCHHHHHHHhh-ccCCCCCch-hhhh----hhhhh-----ChHH---
Confidence 99999999998 9999995 9999999999874 334434432 1211 22222 1111
Q ss_pred CCCHHHHhhceeccCCC--HHHHHHHHHHHHHhhCC--C-cchHHHHHHHHHHHHHHHH
Q 024049 213 VPPAEILARCEFLEPLS--EATLSDYEWLVADLQKP--A-PVLMKRVQHYLSSLIQSFL 266 (273)
Q Consensus 213 ~p~~~~l~~~~~~~~~~--~~~~~~~~~~W~~ik~~--~-~~~~~~~~~~~~~~~~~~~ 266 (273)
..-.+.+.........+ .+....+.+.++++... + .+.+++++..+.+++++.-
T Consensus 318 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~al~~~~~~~~~~l~~~~ 376 (507)
T 3oai_A 318 AATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDEALKDAQTNNNNNNNNNN 376 (507)
T ss_dssp HHHHHHHHHSEECCCSTTHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHC---------
T ss_pred HHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhccc
Confidence 11124445555444433 34455667777776532 2 4467777777776666543
No 40
>3n94_A Fusion protein of maltose-binding periplasmic Pro pituitary adenylate cyclase 1 receptor-short...; G-protein coupled receptor; HET: MAL; 1.80A {Escherichia coli} PDB: 3ehs_A* 3ehu_A* 3eht_A* 3n93_A* 3n95_A* 3n96_A*
Probab=99.42 E-value=2.4e-12 Score=122.69 Aligned_cols=230 Identities=16% Similarity=0.122 Sum_probs=139.6
Q ss_pred CEEEEeCccccccCCCCCCChHHhcCc--cc--CCcEEeeCCh--HHHHHHHHHHhCCCCCC------------CChhhh
Q 024049 1 MVIAYKKSKFRKHNLAPIEDWKDLWRP--EL--AGRISMVNSP--REVIGSVLKYMGASYNS------------NNIDLQ 62 (273)
Q Consensus 1 ~gi~YN~~~v~~~g~~~p~SW~dL~dp--~~--kGki~~~d~~--~~~~~~al~~~G~~~~~------------~~~~~~ 62 (273)
.+|.||+++|++ +|+||++|++. ++ +|+..+.-.. ...+...+...|..... .+.+
T Consensus 115 ~~l~YNkdl~~~----~P~Twdel~~~a~~l~~~g~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~-- 188 (475)
T 3n94_A 115 LSLIYNKDLLPN----PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNA-- 188 (475)
T ss_dssp CEEEEETTTCSS----CCSBGGGHHHHHHHHHTTTCEEECCCCSSHHHHHHHHHHTTCEEEEEETTEEEEEEEESSSH--
T ss_pred eEEEEehHHhcc----CCCCHHHHHHHHHHHHhCCCceEEeecCCchHHHHHHHhcCCceeecCCCCccccccccCCH--
Confidence 479999999985 89999999985 33 4665543211 11222334455653211 1111
Q ss_pred hhchHHHHHHHHHHHhcc--cc-cccchhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEE-ecCC-----Cceeeeee
Q 024049 63 VAGGKISVQQNLALLANQ--AR-LFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV-VPKS-----GASLWADL 133 (273)
Q Consensus 63 ~~~~~~~~~~~L~~l~~~--v~-~~~~~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~-~P~e-----G~~~~~d~ 133 (273)
...++.+++.++... +. ....++..+.|.+|++.|.+.++.........+.+++++ +|.. +...+.++
T Consensus 189 ---~~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~G~~am~~~g~~~~~~~~~~~~~~~~~~~P~~~g~~~~~~~g~~~ 265 (475)
T 3n94_A 189 ---GAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLS 265 (475)
T ss_dssp ---HHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTCEEEEEECGGGHHHHHHHTCCEEEECCCBBTTBCCCCEEEEEE
T ss_pred ---HHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHcCCEEEEecCccccChhhhcCCceEEEeCCCCCCCCCCccccceE
Confidence 245677778777643 11 122245788999999999999888877777777888887 5752 24567789
Q ss_pred EEEecCCCCcccccCCCCCCChHHHHHHHH-HHhcHHHhchhhhhhcCCCCCChhhhhccCCChHHhcCCCCCCCCcccC
Q 024049 134 WAIPAASRLETKQIGGRVRGPSPLIHQWIE-FCLQTARALPFKQEVIPGASPSALETTLVKLPEELLKGKPSQDTNLIVG 212 (273)
Q Consensus 134 ~~I~k~a~~~~~~~~~~~~~~~~~A~~FIn-fllspe~q~~~~~~~~~~~~p~~~~~a~~~l~~e~~~~~~~~~~~l~~~ 212 (273)
++|+++++|++ +|.+||+ ||+++|.|..+.. ..++..|.. .... +.+.++ |.+
T Consensus 266 ~~I~~~s~~~e------------~A~~fi~~~l~s~e~~~~~~~-~~~~~~p~~-~~~~----~~~~~~-----p~~--- 319 (475)
T 3n94_A 266 AGINAASPNKE------------LAKEFLENYLLTDEGLEAVNK-DKPLGAVAL-KSYE----EELAKD-----PRI--- 319 (475)
T ss_dssp EEEBTTCTTHH------------HHHHHHHHTTSSHHHHHHHHH-HSCCSEESB-HHHH----HHHTTC-----HHH---
T ss_pred EEEECCCCCHH------------HHHHHHHHHhcCHHHHHHHHh-hCCCCCCch-hhhh----hhhhhC-----hHH---
Confidence 99999999998 9999995 9999999998874 334433432 2211 222211 111
Q ss_pred CCCHHHHhhceeccCCC--HHHHHHHHHHHHHhhC--CC-cchHHHHHHHHHHHHHHH
Q 024049 213 VPPAEILARCEFLEPLS--EATLSDYEWLVADLQK--PA-PVLMKRVQHYLSSLIQSF 265 (273)
Q Consensus 213 ~p~~~~l~~~~~~~~~~--~~~~~~~~~~W~~ik~--~~-~~~~~~~~~~~~~~~~~~ 265 (273)
..-.+.+.........+ .+....+.+.++++.. .+ .+.+++++..+.++|+.+
T Consensus 320 ~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~G~~t~eeal~~~~~~~~~~l~~l 377 (475)
T 3n94_A 320 AATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDEALKDAQTNAAAEFAIF 377 (475)
T ss_dssp HHHHHHHHHSEECCCSTTHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHSHHHH
T ss_pred HHHHHHHhcCccCCCCccHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 11123344444444332 3344556666666642 22 456666666666655543
No 41
>4hs7_A Bacterial extracellular solute-binding protein, P; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: P33; 2.60A {Staphylococcus aureus subsp}
Probab=99.41 E-value=1.7e-11 Score=114.34 Aligned_cols=166 Identities=11% Similarity=0.100 Sum_probs=104.1
Q ss_pred CEEEEeCccccccCCCCCCChHHhcCc------ccCCcEEeeCChHHHHH--HHHHHhCCCCCCCC-----h-hhhh-hc
Q 024049 1 MVIAYKKSKFRKHNLAPIEDWKDLWRP------ELAGRISMVNSPREVIG--SVLKYMGASYNSNN-----I-DLQV-AG 65 (273)
Q Consensus 1 ~gi~YN~~~v~~~g~~~p~SW~dL~dp------~~kGki~~~d~~~~~~~--~al~~~G~~~~~~~-----~-~~~~-~~ 65 (273)
.+|.||+++|++ +|+||++|.+- .-.+..++......... ..+...|......+ . +..+ ..
T Consensus 151 ~~l~Ynkdl~~~----~p~Twdel~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~ 226 (420)
T 4hs7_A 151 TALFYNKKLVKN----APQTLEEVEANAAKLTDSKKKQYGMLFDAKNFYFNYPFLFGNDDYIFKKNGSEYDIHQLGLNSK 226 (420)
T ss_dssp CEEEEETTTCCS----CCCBHHHHHHHHHHHCBTTTTBEEEECCTTSHHHHHHHHCCSSCCSEEESSSCEEEEEECTTCH
T ss_pred eEEEEEcccccc----ccccchhhHHHHHHHHhccCCceeeccCCCCccchhhhhhhccchhhhhccccccccccccCCH
Confidence 478999999986 89999999852 23355555443322221 12222232211000 0 0000 01
Q ss_pred hHHHHHHHHHHHhcc-c-c-cccchhHHHHhhcCcEEEEEeccccHHHHHhc-CCCcEEE-ecCCC-----ceeeeeeEE
Q 024049 66 GKISVQQNLALLANQ-A-R-LFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKR-MSNVAVV-VPKSG-----ASLWADLWA 135 (273)
Q Consensus 66 ~~~~~~~~L~~l~~~-v-~-~~~~~~~~~~~~~Gev~va~~~s~~~~~~~~~-~~~v~~~-~P~eG-----~~~~~d~~~ 135 (273)
...++.+.+.++... + . ....+...+.|.+|++.|.+.++......... +.+++++ +|..+ ...+.++++
T Consensus 227 ~~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~G~~am~~~g~~~~~~~~~~~~~~~g~~~~P~~~g~~~~~~~g~~~~~ 306 (420)
T 4hs7_A 227 HVVKNAERLQKWYDKGYLPKAATHDVMIGLFKEGKVGQFVTGPWNINEYQETFGKDLGVTTLPTDGGKPMKPFLGVRGWY 306 (420)
T ss_dssp HHHHHHHHHHHHHHTTSSCSSCCHHHHHHHHHTTCEEEEEECSTTHHHHHHHHGGGEEEECCCBSSSSBCCCEEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCCcccccchhhhhhccCceEEEEechHHHHHHHHhcCCceEEEEccCCCCCCCccccccceEE
Confidence 234556666666432 1 1 11224577899999999999887766555433 5577775 67532 356778999
Q ss_pred EecCCCCcccccCCCCCCChHHHHHHHHHHhcHHHhchhhhhhcCCCC
Q 024049 136 IPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQEVIPGAS 183 (273)
Q Consensus 136 I~k~a~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~~~~~~~~ 183 (273)
|+++++|++ +|.+||+||++||.|..+... .++.+
T Consensus 307 I~~~sk~~e------------aA~~fi~~l~s~e~~~~~~~~-~g~~P 341 (420)
T 4hs7_A 307 LSEYSKHKY------------WAKDLMLYITSKDTLQKYTDE-MSEIT 341 (420)
T ss_dssp EETTCSCHH------------HHHHHHHHHTSHHHHHHHHHH-HCCCB
T ss_pred ecCCCCCHH------------HHHHHHHHHCCHHHHHHHHHH-hCCCC
Confidence 999999998 999999999999999999854 45443
No 42
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.41 E-value=1.3e-12 Score=122.00 Aligned_cols=166 Identities=17% Similarity=0.171 Sum_probs=110.6
Q ss_pred CEEEEeCccccccCCCCCCChHHhcC--cccC--CcEEeeCCh--HHHHHHHHHHhCCCCCC-----CCh-hhhh-hchH
Q 024049 1 MVIAYKKSKFRKHNLAPIEDWKDLWR--PELA--GRISMVNSP--REVIGSVLKYMGASYNS-----NNI-DLQV-AGGK 67 (273)
Q Consensus 1 ~gi~YN~~~v~~~g~~~p~SW~dL~d--p~~k--Gki~~~d~~--~~~~~~al~~~G~~~~~-----~~~-~~~~-~~~~ 67 (273)
.+++||++++++ +|+||++|++ ++++ |++.+.... ...+...+...|...-. .+. ...+ ....
T Consensus 113 ~~l~Ynkdl~~~----~P~Twdel~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~g~~~~~~~~~~~~~~ 188 (421)
T 1mh3_A 113 LSLIYNKDLLPN----PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGA 188 (421)
T ss_dssp CEEEEETTTCSS----CCSBGGGHHHHHHHHHTTTCEEECCCCSSHHHHHHHHHHTTCEEEEECSSSEEEEEEETTSHHH
T ss_pred eEEEEehhhccC----CCCCHHHHHHHHHHHhcCCCCceeecCCchHHHHHHHHhcCCeeeccccCCCCccCccCCCHHH
Confidence 479999999986 8999999998 5554 766654322 11222334455653211 000 0000 0124
Q ss_pred HHHHHHHHHHhcc--cc-cccchhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEE-ecC-CC----ceeeeeeEEEec
Q 024049 68 ISVQQNLALLANQ--AR-LFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV-VPK-SG----ASLWADLWAIPA 138 (273)
Q Consensus 68 ~~~~~~L~~l~~~--v~-~~~~~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~-~P~-eG----~~~~~d~~~I~k 138 (273)
.++.+++.++... +. ....++..+.|.+|++.|.+.++.........+.+++++ +|. +| ...+.++++|++
T Consensus 189 ~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~G~~am~~~g~~~~~~~~~~~~~~~~~~~P~~~g~~~~~~~~~~~~~i~~ 268 (421)
T 1mh3_A 189 KAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINA 268 (421)
T ss_dssp HHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTSEEEEEECGGGHHHHHHHTCCEEEECCCBBTTBCCCCEEEEEEEEEBT
T ss_pred HHHHHHHHHHHhcCCCCCCCCchhHHHHHHCCCeeEEEeCchhHHHHhhcCCCeeEEeCCCCCCCCCCccccceEEEEEC
Confidence 5677777777532 21 112245678999999999988777666555567788887 785 33 356778999999
Q ss_pred CCCCcccccCCCCCCChHHHHHHH-HHHhcHHHhchhhhhhcCCCC
Q 024049 139 ASRLETKQIGGRVRGPSPLIHQWI-EFCLQTARALPFKQEVIPGAS 183 (273)
Q Consensus 139 ~a~~~~~~~~~~~~~~~~~A~~FI-nfllspe~q~~~~~~~~~~~~ 183 (273)
+++|++ +|.+|| +|+++||.|..+.. ..++.+
T Consensus 269 ~s~~~e------------~A~~fi~~~l~s~e~~~~~~~-~~g~~P 301 (421)
T 1mh3_A 269 ASPNKE------------LAKEFLENYLLTDEGLEAVNK-DKPLGA 301 (421)
T ss_dssp TCSCHH------------HHHHHHHHTTSSHHHHHHHHH-HSCCCE
T ss_pred CCCCHH------------HHHHHHHHHhcCHHHHHHHHH-hcCCCC
Confidence 999988 999999 99999999999874 445433
No 43
>3oo8_A ABC transporter binding protein ACBH; class 2 SBP fold, ABC transporter extracellular solute bindi protein, D-galactose binding; 1.60A {Actinoplanes} PDB: 3oo6_A* 3oo7_A 3oo9_A 3ooa_A
Probab=99.41 E-value=1e-12 Score=122.19 Aligned_cols=166 Identities=13% Similarity=0.122 Sum_probs=105.2
Q ss_pred EEEEeCccccccCCCCCCChHHhcCc--cc--CCcEEe--eCCh----HHHHHH-HHHHhCCC---------CCCCChhh
Q 024049 2 VIAYKKSKFRKHNLAPIEDWKDLWRP--EL--AGRISM--VNSP----REVIGS-VLKYMGAS---------YNSNNIDL 61 (273)
Q Consensus 2 gi~YN~~~v~~~g~~~p~SW~dL~dp--~~--kGki~~--~d~~----~~~~~~-al~~~G~~---------~~~~~~~~ 61 (273)
+|.||+++++++|+++|+||++|++. ++ +|...+ .... ...+.. .+...|.+ ..-.+++
T Consensus 143 ~l~Ynkdl~~~~G~~~P~Twdel~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~- 221 (415)
T 3oo8_A 143 VVFYNKSVFQSKGYEVPASWEAFIALARKMQSDGLVPLAFADKDGWPALGTFDILNLRINGYDYHIKLMKHEVPWTDPG- 221 (415)
T ss_dssp EEEEEHHHHHHHTCCCCSBHHHHHHHHHHHHHTTCEEEECCCTTSSTTHHHHHHHHHHHTCHHHHHHHHHTSSCTTSHH-
T ss_pred EEEEeHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCceeecCCCCCcHHHHHHHHHHhccCHHHHHHHHcCCcCCCCHH-
Confidence 78999999999999999999999974 22 354333 2111 112221 12223321 1112222
Q ss_pred hhhchHHHHHHHHHHHhcccc----cccchhHHHHhhcCcEEEEEeccccHHHHHhc--CCCcEEE-ecCC----C---c
Q 024049 62 QVAGGKISVQQNLALLANQAR----LFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKR--MSNVAVV-VPKS----G---A 127 (273)
Q Consensus 62 ~~~~~~~~~~~~L~~l~~~v~----~~~~~~~~~~~~~Gev~va~~~s~~~~~~~~~--~~~v~~~-~P~e----G---~ 127 (273)
+.++.+.+.++.+.+. ....++..+.|.+|++.|.+.+++.......+ +.+++++ +|.. | .
T Consensus 222 -----~~~al~~~~~l~~~~~~~~~~~~~~~~~~~f~~G~~a~~~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~ 296 (415)
T 3oo8_A 222 -----VTKVFDQWRELAAYQQKGANGRTWQDAAKALENKQAGMMFQGSNQVAANYSAKNLPDLDFFVFPAINPQYGTDYM 296 (415)
T ss_dssp -----HHHHHHHHHHHGGGBCSSGGGCCHHHHHHHHHTTSEEEEEEEHHHHHHHSCTTTGGGEEEECCCBSSTTTTTCEE
T ss_pred -----HHHHHHHHHHHHHHhCCCCcccCHHHHHHHHHcCCeeEEEcccHhhhhcCCccccCCceEEeCCCCCCCCCCccc
Confidence 5577788888776221 11224567899999999887766222222222 3467764 5641 2 2
Q ss_pred eeeeeeEEEecCCCCcccccCCCCCCChHHHHHHHHHHhcHHHhchhhhhhcCCCCCC
Q 024049 128 SLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPS 185 (273)
Q Consensus 128 ~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~~~~~~~~p~ 185 (273)
..+.++++|+++++|++ +|.+||+||++||.|..+.....++.+++
T Consensus 297 ~~~~~~~~I~~~s~~~e------------~A~~fl~~l~s~e~q~~~~~~~~g~~P~~ 342 (415)
T 3oo8_A 297 DAPTDGFILPKKGKNAA------------AAKKVLQYIGTAEAEAAFLKTDHWDVGLA 342 (415)
T ss_dssp ECCCEEEECBTTCSCHH------------HHHHHHHHHTSHHHHHHHHTTCSSCEECS
T ss_pred cccCceEEEECCCCCHH------------HHHHHHHHHhCHHHHHHHHhccCCCCCCC
Confidence 55778999999999998 99999999999999999984134544433
No 44
>3cij_A UPF0100 protein AF_0094; archaeal periplasmic binding protein, unknown function, metal binding protein, transport protein; 1.07A {Archaeoglobus fulgidus} PDB: 2ons_A 2onk_E 2onr_A
Probab=99.41 E-value=8.7e-13 Score=118.24 Aligned_cols=145 Identities=13% Similarity=0.195 Sum_probs=95.3
Q ss_pred CEEEEeCccccccCCCCCCChHHhc-CcccCCcEEeeCChHHHHH----HHHHHhCCCCCCCChhhhhhchHHHHHHHHH
Q 024049 1 MVIAYKKSKFRKHNLAPIEDWKDLW-RPELAGRISMVNSPREVIG----SVLKYMGASYNSNNIDLQVAGGKISVQQNLA 75 (273)
Q Consensus 1 ~gi~YN~~~v~~~g~~~p~SW~dL~-dp~~kGki~~~d~~~~~~~----~al~~~G~~~~~~~~~~~~~~~~~~~~~~L~ 75 (273)
++|+||++.....++ +|+||.||+ +| ++||++.|+.....| .++...|...+. .. .++.+.
T Consensus 87 lvl~~~~~~~~~~~i-~~~~w~dll~~~--~~~I~~~~p~~~~~G~~~~~~l~~~~~~~~~--~~---------~~~~l~ 152 (295)
T 3cij_A 87 IVLAYRNDSRYADEI-NSQNWYEILKRP--DVRFGFSNPNDDPCGYRSLMAIQLAELYYND--PT---------IFDELV 152 (295)
T ss_dssp EEEEECTTSTTTTTC-CTTTHHHHHTST--TCCEEEECTTTCHHHHHHHHHHHHHHHHTTC--TT---------HHHHHT
T ss_pred EEEEEeCCCcccccc-CcccHHHHhcCC--CcEEEEeCCCcCCccHHHHHHHHHHHHhccC--Cc---------HHHHHh
Confidence 478999987543222 579999965 56 589999986543344 223333322221 11 123332
Q ss_pred HH-----------------------hc---cccccc-chhHHHHhhcCcEEEEEeccccHHHHHhcCCCcE-EEecCCCc
Q 024049 76 LL-----------------------AN---QARLFD-STHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVA-VVVPKSGA 127 (273)
Q Consensus 76 ~l-----------------------~~---~v~~~~-~~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~-~~~P~eG~ 127 (273)
.. ++ ++.... ..+..+.+.+||+++++.|.+++... + +. +.+|+++.
T Consensus 153 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ge~d~~i~~~s~a~~~---~--~~~~~~P~~~~ 227 (295)
T 3cij_A 153 AKNSNLRFSEDNGSYVLRMPSSERIEINKSKIMIRSMEMELIHLVESGELDYFFIYKSVAKQH---G--FNFVELPVEID 227 (295)
T ss_dssp GGGBSCCEEEETTEEEEECCCGGGCCBCTTTEEEESSTHHHHHHHHTTSCSEEEEEHHHHHHT---T--CEEEECCTTTS
T ss_pred hccccccccccCCcccccccccccccccccceeecccHHHHHHHHhCCCCCEEEEEeehhhhC---C--CCEEECchhhc
Confidence 11 11 111122 34788999999999999998877642 2 33 35898863
Q ss_pred -------------------------eeeeeeEEEecCCCCcccccCCCCCCChHHHHHHHHHHhcHHHhchhhh
Q 024049 128 -------------------------SLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQ 176 (273)
Q Consensus 128 -------------------------~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~ 176 (273)
....++++|+++++|++ +|++|||||+|||+|..+.+
T Consensus 228 ~~~~~~~~~y~~~~~~~~~~~~~~~~~i~~~~~i~k~a~~~~------------~A~~Fi~fl~S~e~q~i~~~ 289 (295)
T 3cij_A 228 LSSPDYAELYSKVKVVLANGKEVTGKPIVYGITIPKNAENRE------------LAVEFVKLVISEEGQEILRE 289 (295)
T ss_dssp SCCGGGHHHHTTEEEECTTSCEEECCCCEEEEECCTTCSCHH------------HHHHHHHHHHSHHHHHHHHH
T ss_pred cCCccccccccceEEeccCCccccCCceEEEEEeecCCCCHH------------HHHHHHHHHhChhHHHHHHH
Confidence 12467899999999988 89999999999999987763
No 45
>3cfx_A UPF0100 protein MA_0280; ABC transporter, binding protein, molybdate, tungstate, LIGA unknown function, transport protein; 1.60A {Methanosarcina acetivorans}
Probab=99.41 E-value=1.1e-12 Score=117.73 Aligned_cols=145 Identities=17% Similarity=0.215 Sum_probs=94.8
Q ss_pred CEEEEeCccccccCCCCCCChHHhc-CcccCCcEEeeCChHHHHHH----HHHHhCCCCCCCChhhhhhchHHHHHHHHH
Q 024049 1 MVIAYKKSKFRKHNLAPIEDWKDLW-RPELAGRISMVNSPREVIGS----VLKYMGASYNSNNIDLQVAGGKISVQQNLA 75 (273)
Q Consensus 1 ~gi~YN~~~v~~~g~~~p~SW~dL~-dp~~kGki~~~d~~~~~~~~----al~~~G~~~~~~~~~~~~~~~~~~~~~~L~ 75 (273)
++|+||++.....++ +|+||.||+ +| ++||++.|+.....|. ++...|...+ +.. .++.|.
T Consensus 87 l~i~~~~~~~~~~~~-~~~~w~dll~~~--~~~I~~~~p~~~~~G~~~~~~l~~~~~~~~--~~~---------~~~~l~ 152 (296)
T 3cfx_A 87 MILAYTNESKYGDEI-NTDNWYEILRRP--DVRYGFSNPNDDPAGYRSQMVTQLAESYYN--DDM---------IYDDLM 152 (296)
T ss_dssp EEEEECTTSTTTTTC-CTTTHHHHHHST--TCCEEEECTTTCHHHHHHHHHHHHHHHHTT--CTT---------HHHHHT
T ss_pred EEEEEeCCCccccCC-CcccHHHHhCCC--CeEEEEeCCCCCCCcHHHHHHHHHHHHhhc--Ccc---------HHHHHh
Confidence 478999987543222 579999955 67 5799999865444442 2223332221 111 123332
Q ss_pred HH------------------------hcc---cccc-cchhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEE-EecCCC
Q 024049 76 LL------------------------ANQ---ARLF-DSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAV-VVPKSG 126 (273)
Q Consensus 76 ~l------------------------~~~---v~~~-~~~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~-~~P~eG 126 (273)
.. +++ +... ...+..+.+.+|++++++.|.+++... + +.+ .+|+++
T Consensus 153 ~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ge~d~~i~~~s~a~~~---~--~~~~~~P~~~ 227 (296)
T 3cfx_A 153 LANTGMTLTTEENGTALIHVPASEEISPNTSKIMLRSMEVELSSALETGEIDYLYIYRSVAEQH---G--FEYVALPPAI 227 (296)
T ss_dssp GGGSSCEEEECTTSCEEEECCCGGGCCCCTTTEEEESSGGGGHHHHHTTSCSEEEEEHHHHHHH---T--CEEECCCTTT
T ss_pred hcccccccccccCCcccccccccccccccccceeecccHHHHHHHHHcCCCCEEEeehhhHhhC---C--CCEEECChhh
Confidence 21 111 1112 234778999999999999998887653 2 333 478876
Q ss_pred c-------------------------eeeeeeEEEecCCCCcccccCCCCCCChHHHHHHHHHHhcHHHhchhhh
Q 024049 127 A-------------------------SLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQ 176 (273)
Q Consensus 127 ~-------------------------~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~ 176 (273)
. ..+.++++|+++++|++ +|++|||||+|||+|..+.+
T Consensus 228 ~~~~~~~~~~y~~v~~~~~~g~~~~~~~i~~~~~i~k~a~~~~------------~A~~Fi~fllS~e~q~i~~~ 290 (296)
T 3cfx_A 228 DLSSLEYADNYSKVQVEMVNGEVVTGSPIVYGVTIPNNAENSE------------LATEFVALLLGETGQQIFIE 290 (296)
T ss_dssp SSCCGGGHHHHTTEEEECTTSCEEECCCCEEEEECCTTCSCHH------------HHHHHHHHHHSHHHHHHHHH
T ss_pred cccCccccccccceeeeccCCccccCCceEEEEEeecCCCCHH------------HHHHHHHHHhChHHHHHHHH
Confidence 2 22468999999999988 89999999999999987763
No 46
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=99.41 E-value=1.8e-12 Score=123.76 Aligned_cols=166 Identities=18% Similarity=0.188 Sum_probs=110.9
Q ss_pred CEEEEeCccccccCCCCCCChHHhcC--cccC--CcEEeeCChHH--HHHHHHHHhCCCCCC-----CCh-hhhh-hchH
Q 024049 1 MVIAYKKSKFRKHNLAPIEDWKDLWR--PELA--GRISMVNSPRE--VIGSVLKYMGASYNS-----NNI-DLQV-AGGK 67 (273)
Q Consensus 1 ~gi~YN~~~v~~~g~~~p~SW~dL~d--p~~k--Gki~~~d~~~~--~~~~al~~~G~~~~~-----~~~-~~~~-~~~~ 67 (273)
.++.||+++|++ +|+||++|++ ++++ |++.+...... .+...+...|..... .+. ...+ ....
T Consensus 113 ~~l~YNkdl~~~----~P~Twdel~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~Gg~~~~~~~g~~~~~~~~~~~~~~ 188 (487)
T 1hsj_A 113 LSLIYNKDLLPN----PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGA 188 (487)
T ss_dssp CEEEEEGGGCSS----CCSBSTTSHHHHHHHTTTTCEEECCCSSSHHHHHHHHHHTTCCSEEECSSSEEEEEETTSSHHH
T ss_pred eEEEEEhhhhcC----CCCCHHHHHHHHHHHhcCCcceeeecCCchHHHHHHHHhcCCeecccccccccccccCCCCHHH
Confidence 478999999986 8999999998 5665 77666432211 222234455654211 000 0000 0124
Q ss_pred HHHHHHHHHHhcc--cc-cccchhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEE-ecC-CC----ceeeeeeEEEec
Q 024049 68 ISVQQNLALLANQ--AR-LFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV-VPK-SG----ASLWADLWAIPA 138 (273)
Q Consensus 68 ~~~~~~L~~l~~~--v~-~~~~~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~-~P~-eG----~~~~~d~~~I~k 138 (273)
.++.+++.++... +. ....++..+.|.+|++.|.+.++.........+.+++++ +|. +| ...+.++++|++
T Consensus 189 ~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~G~~am~~~g~w~~~~~~~~~~~~~~~~~P~~~g~~~~~~~~~~~~~I~~ 268 (487)
T 1hsj_A 189 KAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINA 268 (487)
T ss_dssp HHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTSSEEEEEECGGGHHHHHHTTCCEEEECCCBBTTBCCCCCBEEEEEEEBS
T ss_pred HHHHHHHHHHHHCCCCCCCCCchhHHHHHHcCCeeEEecCCcchhhHHhcCCCeeEecCCCCCCCCCCccccceEEEEEC
Confidence 5677777777642 11 112245678999999999888776665555567788887 786 33 345678899999
Q ss_pred CCCCcccccCCCCCCChHHHHHHH-HHHhcHHHhchhhhhhcCCCC
Q 024049 139 ASRLETKQIGGRVRGPSPLIHQWI-EFCLQTARALPFKQEVIPGAS 183 (273)
Q Consensus 139 ~a~~~~~~~~~~~~~~~~~A~~FI-nfllspe~q~~~~~~~~~~~~ 183 (273)
+++|++ +|.+|| +|+++||.|..+.. ..++.+
T Consensus 269 ~s~~~e------------aA~~fl~~~l~s~e~~~~~~~-~~g~~P 301 (487)
T 1hsj_A 269 ASPNKE------------LAKEFLENYLLTDEGLEAVNK-DKPLGA 301 (487)
T ss_dssp SCSCHH------------HHHHHHHHTTTSHHHHHHHHH-HSCCCE
T ss_pred CCCCHH------------HHHHHHHHHHcCHHHHHHHHH-hcCCCC
Confidence 999998 999999 99999999999874 345443
No 47
>3ob4_A Conglutin, maltose ABC transporter periplasmic protein, ARAH; alpha-amylase inhibitors (AAI), lipid transfer (LT) and SEED (SS) protein family; HET: MLR; 2.71A {Escherichia coli}
Probab=99.41 E-value=2.9e-12 Score=123.41 Aligned_cols=163 Identities=17% Similarity=0.130 Sum_probs=112.3
Q ss_pred CEEEEeCccccccCCCCCCChHHhcCc--cc--CCcEEeeCCh--HHHHHHHHHHhCCCCCC------------CChhhh
Q 024049 1 MVIAYKKSKFRKHNLAPIEDWKDLWRP--EL--AGRISMVNSP--REVIGSVLKYMGASYNS------------NNIDLQ 62 (273)
Q Consensus 1 ~gi~YN~~~v~~~g~~~p~SW~dL~dp--~~--kGki~~~d~~--~~~~~~al~~~G~~~~~------------~~~~~~ 62 (273)
.+|+||+++|++ +|+||++|++. ++ +|+..+.-.. ...+...+...|..... .+.+
T Consensus 113 ~~l~YNkdl~~~----~P~Twdel~~~a~~l~~~g~~~~~~~~~~~~~~~~~~~~~Gg~~~~~~~~~~~~~~~~~~~~-- 186 (500)
T 3ob4_A 113 LSLIYNKDLLPN----PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYAAGKYDIKDVGVDNA-- 186 (500)
T ss_dssp CEEEEETTTCSS----CCSBGGGHHHHHHHHHHTTCEEECCCCSSHHHHHHHHHHTTCEEEEECSSSEEEEEEESSSH--
T ss_pred eEEEEEhHHhcC----CCCCHHHHHHHHHHHHhCCCceEEeecCccHHHHHHHHHhCCeeecccCCccccCCcccCCH--
Confidence 479999999985 89999999985 33 4665443211 11222234455543210 1111
Q ss_pred hhchHHHHHHHHHHHhcc--cc-cccchhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEE-ecC-----CCceeeeee
Q 024049 63 VAGGKISVQQNLALLANQ--AR-LFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV-VPK-----SGASLWADL 133 (273)
Q Consensus 63 ~~~~~~~~~~~L~~l~~~--v~-~~~~~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~-~P~-----eG~~~~~d~ 133 (273)
...++++++.++... +. ....++..+.|.+|++.+.+.|+.....+...+.+++++ +|. .+...+.++
T Consensus 187 ---~~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~G~~am~~~g~~~~~~~~~~~~~~~~~~~P~~~g~~~~~~~g~~~ 263 (500)
T 3ob4_A 187 ---GAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSAVNYGVTVLPTFKGQPSKPFVGVLS 263 (500)
T ss_dssp ---HHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTCEEEEEECGGGHHHHHTSSCCEEEECCCEETTEECCCEEEEEE
T ss_pred ---HHHHHHHHHHHHHHcCCCCCCCChhHHHHHHHcCCeeEEecCchhHHHHHhcCCCeEEEECCCCCCCCccccccceE
Confidence 245777888877653 11 122346789999999999999988887777777788887 575 234677889
Q ss_pred EEEecCCCCcccccCCCCCCChHHHHHHHH-HHhcHHHhchhhhhhcCCCCCC
Q 024049 134 WAIPAASRLETKQIGGRVRGPSPLIHQWIE-FCLQTARALPFKQEVIPGASPS 185 (273)
Q Consensus 134 ~~I~k~a~~~~~~~~~~~~~~~~~A~~FIn-fllspe~q~~~~~~~~~~~~p~ 185 (273)
++|+++++|++ +|.+||+ ||++||.|..+.. ..++..|.
T Consensus 264 ~~I~~~sk~~e------------aA~~Fi~~~l~s~e~q~~~~~-~~~~~~p~ 303 (500)
T 3ob4_A 264 AGINAASPNKE------------LAKEFLENYLLTDEGLEAVNK-DKPLGAVA 303 (500)
T ss_dssp EEEETTCSCHH------------HHHHHHHHTTTSHHHHHHHHH-HSCCSEES
T ss_pred EEEECCCCCHH------------HHHHHHHHHhcCHHHHHHHHh-cCCCCCCc
Confidence 99999999998 9999995 9999999999874 33443443
No 48
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=99.40 E-value=2.2e-12 Score=122.03 Aligned_cols=227 Identities=15% Similarity=0.124 Sum_probs=138.3
Q ss_pred CEEEEeCccccccCCCCCCChHHhcCc--cc--CCcEEeeCCh--HHHHHHHHHHhCCCCCC------------CChhhh
Q 024049 1 MVIAYKKSKFRKHNLAPIEDWKDLWRP--EL--AGRISMVNSP--REVIGSVLKYMGASYNS------------NNIDLQ 62 (273)
Q Consensus 1 ~gi~YN~~~v~~~g~~~p~SW~dL~dp--~~--kGki~~~d~~--~~~~~~al~~~G~~~~~------------~~~~~~ 62 (273)
.+|+||+++|++ +|+||++|++. ++ +|+..+.-.. ...+...+...|..... .+.+
T Consensus 113 ~~l~YNkdl~~~----~P~Twdel~~~a~~l~~~g~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~-- 186 (449)
T 3iot_A 113 LSLIYNKDLLPN----PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNA-- 186 (449)
T ss_dssp CEEEEETTTCSS----CCSBGGGHHHHHHHHHTTTCBSCCCCCSCHHHHHHHHTTTTCBSSEECSSCEETTCCBSSSH--
T ss_pred eEEEEehHHhcc----CCCCHHHHHHHHHHHHhCCCceEEeecCchHHHHHHHHhhCCeeeccccccccccccccCCH--
Confidence 479999999985 89999999984 22 3544332111 11122223334543211 1111
Q ss_pred hhchHHHHHHHHHHHhcc--cc-cccchhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEE-ecCC-C----ceeeeee
Q 024049 63 VAGGKISVQQNLALLANQ--AR-LFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV-VPKS-G----ASLWADL 133 (273)
Q Consensus 63 ~~~~~~~~~~~L~~l~~~--v~-~~~~~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~-~P~e-G----~~~~~d~ 133 (273)
...++++++.++... +. ....++..+.|.+|++.|.+.++.....+...+.+++++ +|.. | ...+.++
T Consensus 187 ---~~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~G~~a~~~~g~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~ 263 (449)
T 3iot_A 187 ---GAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLS 263 (449)
T ss_dssp ---HHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHTTCBSEEEECGGGHHHHHHHTCCEEEECCCEETTEECCCEEEEEE
T ss_pred ---HHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHcCCeeEEeccccchhhHHhcCCceeEEeCCCCCCCCCCceeceeE
Confidence 245677777777653 21 122245778999999999999888877777777888887 5752 2 3567789
Q ss_pred EEEecCCCCcccccCCCCCCChHHHHHHH-HHHhcHHHhchhhhhhcCCCCCChhhhhccCCChHHhcCCCCCCCCcccC
Q 024049 134 WAIPAASRLETKQIGGRVRGPSPLIHQWI-EFCLQTARALPFKQEVIPGASPSALETTLVKLPEELLKGKPSQDTNLIVG 212 (273)
Q Consensus 134 ~~I~k~a~~~~~~~~~~~~~~~~~A~~FI-nfllspe~q~~~~~~~~~~~~p~~~~~a~~~l~~e~~~~~~~~~~~l~~~ 212 (273)
++|+++++|++ +|.+|| |||+++|.+..+.. ..+++.|.. .... +.+..+ |.+
T Consensus 264 ~~I~~~s~~~e------------~A~~fl~~~l~s~e~~~~~~~-~~~~~~p~~-~~~~----~~~~~~-----p~~--- 317 (449)
T 3iot_A 264 AGINAASPNKE------------LAKEFLENYLLTDEGLEAVNK-DKPLGAVAL-KSYE----EELAKD-----PRI--- 317 (449)
T ss_dssp EEEBTTCSCHH------------HHHHHHHHTTSSHHHHHHHHH-HSCCSEESB-HHHH----HHHTTS-----HHH---
T ss_pred EEEECCCCCHH------------HHHHHHHHHhcCHHHHHHHHh-hcccCCcch-hhhh----hhhhhC-----hhH---
Confidence 99999999998 999999 59999999998874 444444432 1211 222221 111
Q ss_pred CCCHHHHhhceeccCCC--HHHHHHHHHHHHHhhCC--C-cchHHHHHHHHHHHH
Q 024049 213 VPPAEILARCEFLEPLS--EATLSDYEWLVADLQKP--A-PVLMKRVQHYLSSLI 262 (273)
Q Consensus 213 ~p~~~~l~~~~~~~~~~--~~~~~~~~~~W~~ik~~--~-~~~~~~~~~~~~~~~ 262 (273)
....+.++........+ .+....+.+.+.++..- + .+.+++++..+.+++
T Consensus 318 ~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~G~~~~eeal~~~~~~~~~i~ 372 (449)
T 3iot_A 318 AATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDAALAAAQTNAAAMA 372 (449)
T ss_dssp HHHHHHHHHSEECCCSTHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCccCCCCccHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 11123444555444443 33445666667666522 3 346777777766665
No 49
>3csg_A MBP, maltose-binding protein monobody YS1 fusion, MMBP; engineered binding protein, antibody mimic, synthetic protein interface; 1.80A {Escherichia coli} PDB: 2obg_A 3csb_A* 3a3c_A* 3d4g_A* 3d4c_A* 3ef7_A*
Probab=99.40 E-value=1.3e-12 Score=123.94 Aligned_cols=166 Identities=18% Similarity=0.188 Sum_probs=110.4
Q ss_pred CEEEEeCccccccCCCCCCChHHhcC--cccC--CcEEeeCChHH--HHHHHHHHhCCCCCC-----CCh-hhhh-hchH
Q 024049 1 MVIAYKKSKFRKHNLAPIEDWKDLWR--PELA--GRISMVNSPRE--VIGSVLKYMGASYNS-----NNI-DLQV-AGGK 67 (273)
Q Consensus 1 ~gi~YN~~~v~~~g~~~p~SW~dL~d--p~~k--Gki~~~d~~~~--~~~~al~~~G~~~~~-----~~~-~~~~-~~~~ 67 (273)
.+|.||+++|++ +|+||++|++ ++++ |++.+.....+ .+...+...|..... .+. ...+ ....
T Consensus 111 ~~l~YNkdl~~~----~P~Twdel~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~Gg~~~~~~~g~~~~~~~~~~~~~~ 186 (461)
T 3csg_A 111 LSLIYNKDLLPN----PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGA 186 (461)
T ss_dssp CEEEEETTTCSS----CCSBGGGHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHHTTCEEEEECSSSEEEEEEESSSHHH
T ss_pred eEEEEEhhhhcc----CCcCHHHHHHHHHHHhhCCCceeEecCCchHHHHHHHHhcCCeEeecccCcccccccCcCCHHH
Confidence 479999999986 8999999998 5555 77666533222 222334455653211 000 0000 0124
Q ss_pred HHHHHHHHHHhcc--cc-cccchhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEE-ecC-CC----ceeeeeeEEEec
Q 024049 68 ISVQQNLALLANQ--AR-LFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV-VPK-SG----ASLWADLWAIPA 138 (273)
Q Consensus 68 ~~~~~~L~~l~~~--v~-~~~~~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~-~P~-eG----~~~~~d~~~I~k 138 (273)
.++.+++.++... +. ....++..+.|.+|++.|.+.++.........+.+++++ +|. +| ...+.++++|++
T Consensus 187 ~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~G~~am~~~g~w~~~~~~~~~~~~~~~~~P~~~g~~~~~~~~~~~~~I~~ 266 (461)
T 3csg_A 187 KAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINA 266 (461)
T ss_dssp HHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTCEEEEEECGGGHHHHHHHTCCEEEECCCEETTEECCCEEEEEEEEEBT
T ss_pred HHHHHHHHHHHHcCCCCCCCCchhHHHHHhcCCeeEEecCcchHHHHHhcCCceEEEeCCCCCCCCCCceecceEEEEeC
Confidence 5677777777542 11 112245678999999999888776665555557788887 785 33 345678899999
Q ss_pred CCCCcccccCCCCCCChHHHHHHH-HHHhcHHHhchhhhhhcCCCC
Q 024049 139 ASRLETKQIGGRVRGPSPLIHQWI-EFCLQTARALPFKQEVIPGAS 183 (273)
Q Consensus 139 ~a~~~~~~~~~~~~~~~~~A~~FI-nfllspe~q~~~~~~~~~~~~ 183 (273)
+++|++ +|.+|| +||++||.|..+.. ..++.+
T Consensus 267 ~s~~~e------------~A~~fl~~~l~s~e~q~~~~~-~~g~~P 299 (461)
T 3csg_A 267 ASPNKE------------LAKEFLENYLLTDEGLEAVNK-DKPLGA 299 (461)
T ss_dssp TCTTHH------------HHHHHHHHTTSSHHHHHHHHH-HSCCCE
T ss_pred CCCCHH------------HHHHHHHHHhcCHHHHHHHHH-hcCCCC
Confidence 999988 999999 99999999999874 345433
No 50
>2xd3_A MALX, maltose/maltodextrin-binding protein; solute-binding protein, sugar binding protein, virulence, alpha-glucan, sugar transport; HET: GLC; 2.00A {Streptococcus pneumoniae} PDB: 2xd2_A*
Probab=99.39 E-value=2.2e-12 Score=120.38 Aligned_cols=161 Identities=15% Similarity=0.121 Sum_probs=108.8
Q ss_pred CEEEEeCccccccCCCCCCChHHhcC--cccC--------CcEEeeCChHH--HHHHHHHHhCCCCCC-----------C
Q 024049 1 MVIAYKKSKFRKHNLAPIEDWKDLWR--PELA--------GRISMVNSPRE--VIGSVLKYMGASYNS-----------N 57 (273)
Q Consensus 1 ~gi~YN~~~v~~~g~~~p~SW~dL~d--p~~k--------Gki~~~d~~~~--~~~~al~~~G~~~~~-----------~ 57 (273)
.+|.||+++|++ +|+||++|++ .+++ |+..+...... .+...+...|..... .
T Consensus 143 ~~l~YNkdl~~~----~P~Twdel~~~~~~l~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~ 218 (416)
T 2xd3_A 143 LVMYYNKDLVKD----APKTFADLENLAKDSKYAFAGEDGKTTAFLADWTNFYYTYGLLAGNGAYVFGQNGKDAKDIGLA 218 (416)
T ss_dssp CEEEEETTTCSS----CCCBHHHHHHHHHSGGGBCTTSTTCBCSEECCTTSHHHHHHHHHHTTCEEEHHHHTEEEEEETT
T ss_pred eEEEEEhhhhcC----CCCCHHHHHHHHHHhhcccccCCCCceeeEEecCcchhHHHHHHhhCCcccCCCCCcccccccC
Confidence 479999999986 8999999998 4555 55444322211 122233445653210 1
Q ss_pred ChhhhhhchHHHHHHHHHHHhc----cccc--ccchhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEE-ecC--CC--
Q 024049 58 NIDLQVAGGKISVQQNLALLAN----QARL--FDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV-VPK--SG-- 126 (273)
Q Consensus 58 ~~~~~~~~~~~~~~~~L~~l~~----~v~~--~~~~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~-~P~--eG-- 126 (273)
++ ...++.+++.++.. .+.. ...++..+.|.+|++.|.+.++.....+...+.+++++ +|. +|
T Consensus 219 ~~------~~~~al~~~~~l~~g~~~~~~~~~~~~~~~~~~f~~G~~am~~~g~w~~~~~~~~~~~~~~~~~P~~~~g~~ 292 (416)
T 2xd3_A 219 ND------GSIVGINYAKSWYEKWPKGMQDTEGAGNLIQTQFQEGKTAAIIDGPWKAQAFKDAKVNYGVATIPTLPNGKE 292 (416)
T ss_dssp SH------HHHHHHHHHHHHHTTSCGGGGCSSCHHHHHHHHHHTTCCSEEEECGGGHHHHHHTTCCEEEECCCBCTTSCC
T ss_pred CH------HHHHHHHHHHHHHhcCCCccccccccHHHHHHHHhcCCeEEEecCcchhhhHHhcCCceEEEeCCCCCCCCc
Confidence 22 24567777777751 2212 11245678999999999998777666665567789987 785 24
Q ss_pred --ceeeeeeEEEecCCCCcccccCCCCCCChHHHHHHHHHHhcHHHhchhhhhhcCCCCC
Q 024049 127 --ASLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASP 184 (273)
Q Consensus 127 --~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~~~~~~~~p 184 (273)
...+..+++|+++++|++ +|.+||+||+++|.|..+... .++.++
T Consensus 293 ~~~~~~~~~~~I~~~s~~~e------------~A~~fi~~l~s~e~~~~~~~~-~g~~P~ 339 (416)
T 2xd3_A 293 YAAFGGGKAWVIPQAVKNLE------------ASQKFVDFLVATEQQKVLYDK-TNEIPA 339 (416)
T ss_dssp CCCEEEEEEEECBTTCSCHH------------HHHHHHHHHHSHHHHHHHHHH-HCCEES
T ss_pred ccccccceEEEEeCCCCCHH------------HHHHHHHHHcCHHHHHHHHHh-cCCCCC
Confidence 345677899999999988 999999999999999988753 354433
No 51
>3osr_A Maltose-binding periplasmic protein, green fluore protein; engineered protein, sensor protein, fluorescent protein, MBP maltose sensor; HET: C12 MAL; 2.00A {Escherichia coli}
Probab=99.38 E-value=1.6e-12 Score=129.57 Aligned_cols=163 Identities=17% Similarity=0.128 Sum_probs=115.2
Q ss_pred CEEEEeCccccccCCCCCCChHHhcCc--cc--CCcEEeeCCh--HHHHHHHHHHhCCCCCC------------CChhhh
Q 024049 1 MVIAYKKSKFRKHNLAPIEDWKDLWRP--EL--AGRISMVNSP--REVIGSVLKYMGASYNS------------NNIDLQ 62 (273)
Q Consensus 1 ~gi~YN~~~v~~~g~~~p~SW~dL~dp--~~--kGki~~~d~~--~~~~~~al~~~G~~~~~------------~~~~~~ 62 (273)
.+|+||++++++ +|+||++|++. ++ +|+..+.-.. ...+...+...|..... .+.+
T Consensus 149 ~~l~YNkdlfee----~P~TWdEL~~~akklk~~G~~~~~~~~~~~~~~~~~l~~~Gg~~~~~~~~~~d~~~~~~d~~-- 222 (653)
T 3osr_A 149 LSLIYNKDLLPN----PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNA-- 222 (653)
T ss_dssp CEEEEETTTCSS----CCSBSTTHHHHHHHHHTTTCEEECCCCSSHHHHHHHHHHTTCEEEEEETTEEEEEEEESSSH--
T ss_pred eEEEEEhHHhhC----CCCCHHHHHHHHHHHHhCCCceeEeccCchHHHHHHHHHcCCeeeeccCcccccCccccCCH--
Confidence 479999999985 89999999984 33 4655443211 11222233445543210 1111
Q ss_pred hhchHHHHHHHHHHHhcc--cc-cccchhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEE-ecC-----CCceeeeee
Q 024049 63 VAGGKISVQQNLALLANQ--AR-LFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV-VPK-----SGASLWADL 133 (273)
Q Consensus 63 ~~~~~~~~~~~L~~l~~~--v~-~~~~~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~-~P~-----eG~~~~~d~ 133 (273)
...++.+++.++.+. +. ....++..+.|.+|++.+.+.|+.....+...+.+++++ +|. .+...+.++
T Consensus 223 ---~~~~ale~l~~L~~~g~~~~~~~~~~~~~~f~sGk~am~~~gsw~~~~l~~~~~~~gv~~~P~~~g~~~~~~~g~~~ 299 (653)
T 3osr_A 223 ---GAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLS 299 (653)
T ss_dssp ---HHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTSEEEEEECGGGHHHHHHHTCCEEEECCCBBTTBCCCCEEEEEE
T ss_pred ---HHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHCCCEEEEEeChhHHHHHhhcCCCEEEEEcCCCCCCCcceeeccEE
Confidence 245777888887653 11 122246778999999999999998888777778899987 785 456778889
Q ss_pred EEEecCCCCcccccCCCCCCChHHHHHHHH-HHhcHHHhchhhhhhcCCCCCC
Q 024049 134 WAIPAASRLETKQIGGRVRGPSPLIHQWIE-FCLQTARALPFKQEVIPGASPS 185 (273)
Q Consensus 134 ~~I~k~a~~~~~~~~~~~~~~~~~A~~FIn-fllspe~q~~~~~~~~~~~~p~ 185 (273)
++|+++++|++ +|.+||+ ||++||.|..+++ ..++..|+
T Consensus 300 ~aI~k~Skn~e------------aA~~FI~nfl~S~E~q~~~a~-~~g~~~P~ 339 (653)
T 3osr_A 300 AGINAASPNKE------------LAKEFLENYLLTDEGLEAVNK-DKPLGAVA 339 (653)
T ss_dssp EEEBTTCSCHH------------HHHHHHHHTTSSHHHHHHHHH-HSCCCEES
T ss_pred EEEECCCCCHH------------HHHHHHHHHccCHHHHHHHHH-hcCCCCCC
Confidence 99999999998 9999996 9999999999985 44555554
No 52
>3h4z_A Maltose-binding periplasmic protein fused with Al DERP7; MBP fusion, AHA1/BPI domain-like, super roll, sugar T transport, allergen; HET: GLC; 2.35A {Escherichia coli}
Probab=99.37 E-value=4.5e-12 Score=124.31 Aligned_cols=163 Identities=17% Similarity=0.135 Sum_probs=111.1
Q ss_pred CEEEEeCccccccCCCCCCChHHhcCc--cc--CCcEEeeCCh--HHHHHHHHHHhCCCCCC------------CChhhh
Q 024049 1 MVIAYKKSKFRKHNLAPIEDWKDLWRP--EL--AGRISMVNSP--REVIGSVLKYMGASYNS------------NNIDLQ 62 (273)
Q Consensus 1 ~gi~YN~~~v~~~g~~~p~SW~dL~dp--~~--kGki~~~d~~--~~~~~~al~~~G~~~~~------------~~~~~~ 62 (273)
.++.||++.+++ +|+||++|++. ++ +|+..+.-.. ...+...+...|..... .+.+
T Consensus 113 ~~l~YNkdl~~~----~P~Twdel~~~a~kl~~~g~~~~~~~~~~~~~~~~~~~~~Gg~~~~~~~~~~~~~~~~~~~~-- 186 (568)
T 3h4z_A 113 LSLIYNKDLLPN----PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYAAGKYDIKDVGVDNA-- 186 (568)
T ss_dssp CEEEEETTTCSS----CCSBSTTHHHHHHHHHTTTCEEECCCCSSHHHHHHHHHHTTCEEEEECSSCEEEEEEESSSH--
T ss_pred eEEEEEhHHhhC----CCCCHHHHHHHHHHHHhCCCceEEEecCchHHHHHHHHHcCCceeecCCCccccCccccCCH--
Confidence 479999999985 89999999985 32 3654443211 11222233455543210 1111
Q ss_pred hhchHHHHHHHHHHHhcc--cc-cccchhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEE-ecCC-C----ceeeeee
Q 024049 63 VAGGKISVQQNLALLANQ--AR-LFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV-VPKS-G----ASLWADL 133 (273)
Q Consensus 63 ~~~~~~~~~~~L~~l~~~--v~-~~~~~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~-~P~e-G----~~~~~d~ 133 (273)
...++.+.+.++... +. ....++..+.|.+|++.+.+.++.........+.+++++ +|.. | ...+.++
T Consensus 187 ---~~~~al~~l~~l~~~G~~~~~~~~~~~~~~f~~Gk~am~~~g~w~~~~~~~~~~~~~~~~~P~~~g~~~~~~~g~~~ 263 (568)
T 3h4z_A 187 ---GAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSAVNYGVTVLPTFKGQPSKPFVGVLS 263 (568)
T ss_dssp ---HHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTSEEEEEECGGGHHHHHTSSCCEEEECCCEETTEECCCEEEEEE
T ss_pred ---HHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHcCCeEEEEEChhHHHHHHhcCCCEEEEECCCCCCCCccceecceE
Confidence 245677777777653 11 122245788999999999999988887777777788886 5752 2 3567789
Q ss_pred EEEecCCCCcccccCCCCCCChHHHHHHHH-HHhcHHHhchhhhhhcCCCCCC
Q 024049 134 WAIPAASRLETKQIGGRVRGPSPLIHQWIE-FCLQTARALPFKQEVIPGASPS 185 (273)
Q Consensus 134 ~~I~k~a~~~~~~~~~~~~~~~~~A~~FIn-fllspe~q~~~~~~~~~~~~p~ 185 (273)
++|+++++|++ +|.+||+ ||++||.|..+.. ..++..|.
T Consensus 264 ~~I~~~skn~e------------aA~~Fl~~fl~s~e~q~~~~~-~~~~~~p~ 303 (568)
T 3h4z_A 264 AGINAASPNKE------------LAKEFLENYLLTDEGLEAVNK-DKPLGAVA 303 (568)
T ss_dssp EEEBTTCSCHH------------HHHHHHHHTTSSHHHHHHHHH-HSCCSEES
T ss_pred EEEECCCCCHH------------HHHHHHHHHhcCHHHHHHHHH-hCCCCCCc
Confidence 99999999998 9999997 9999999999874 34444443
No 53
>3py7_A Maltose-binding periplasmic protein,paxillin LD1, chimera; viral protein; HET: MLR; 2.29A {Escherichia coli}
Probab=99.37 E-value=4.7e-12 Score=122.41 Aligned_cols=225 Identities=16% Similarity=0.139 Sum_probs=137.4
Q ss_pred CEEEEeCccccccCCCCCCChHHhcCc--cc--CCcEEeeCCh--HHHHHHHHHHhCCCCCC-------------CChhh
Q 024049 1 MVIAYKKSKFRKHNLAPIEDWKDLWRP--EL--AGRISMVNSP--REVIGSVLKYMGASYNS-------------NNIDL 61 (273)
Q Consensus 1 ~gi~YN~~~v~~~g~~~p~SW~dL~dp--~~--kGki~~~d~~--~~~~~~al~~~G~~~~~-------------~~~~~ 61 (273)
.++.||++++++ +|+||++|++. ++ +|+..+.-.. ...+...+...|..... .++
T Consensus 114 ~~l~YNkdl~~~----~P~Twdel~~~a~~l~~~g~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~-- 187 (523)
T 3py7_A 114 LSLIYNKDLLPN----PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNA-- 187 (523)
T ss_dssp CEEEEETTTCSS----CCSBGGGHHHHHHHHHTTTCEEECCCCSSHHHHHHHHHHTTCEEEEEETTEEEEEEEESSSH--
T ss_pred eEEEEEhHHhhc----CCCCHHHHHHHHHHHHhCCCceeEeecCchHHHHHHHHhhCcceeccccccccccccccCCH--
Confidence 479999999985 89999999985 22 3655443211 11222233455543211 122
Q ss_pred hhhchHHHHHHHHHHHhcc--cc-cccchhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEE-ecCC-----Cceeeee
Q 024049 62 QVAGGKISVQQNLALLANQ--AR-LFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV-VPKS-----GASLWAD 132 (273)
Q Consensus 62 ~~~~~~~~~~~~L~~l~~~--v~-~~~~~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~-~P~e-----G~~~~~d 132 (273)
...++.+++.++.+. +. ....++..+.|.+|++.|.+.++.........+.+++++ +|.. +...+.+
T Consensus 188 ----~~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~G~~am~~~g~~~~~~~~~~~~~~~~~~~P~~~g~~~~~~~g~~ 263 (523)
T 3py7_A 188 ----GAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSAVNYGVTVLPTFKGQPSKPFVGVL 263 (523)
T ss_dssp ----HHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTSEEEEEECGGGHHHHHHSSCCEEEECCCEETTEECCCEEEEE
T ss_pred ----HHHHHHHHHHHHHhcCCCCCCCChHHHHHHHhcCCEEEEecCCcchhHHHhcCCceeEEECCCCCCCCCCccccce
Confidence 245677888877653 11 112246789999999999999988887777778888887 5752 2456778
Q ss_pred eEEEecCCCCcccccCCCCCCChHHHHHHHH-HHhcHHHhchhhhhhcCCCCCChhhhhccCCChHHhcCCCCCCCCccc
Q 024049 133 LWAIPAASRLETKQIGGRVRGPSPLIHQWIE-FCLQTARALPFKQEVIPGASPSALETTLVKLPEELLKGKPSQDTNLIV 211 (273)
Q Consensus 133 ~~~I~k~a~~~~~~~~~~~~~~~~~A~~FIn-fllspe~q~~~~~~~~~~~~p~~~~~a~~~l~~e~~~~~~~~~~~l~~ 211 (273)
+++|+++++|++ +|.+||+ ||++||.|..+.. ..++..|.. .... +.+.. +|.+
T Consensus 264 ~~~I~~~sk~~e------------aA~~fi~~~l~s~e~q~~~~~-~~~~~~p~~-~~~~----~~~~~-----~p~~-- 318 (523)
T 3py7_A 264 SAGINAASPNKE------------LAKEFLENYLLTDEGLEAVNK-DKPLGAVAL-KSYE----EELAK-----DPRI-- 318 (523)
T ss_dssp EEEEBTTCSCHH------------HHHHHHHHTTSSHHHHHHHHH-HSCCCEESB-HHHH----HHHTT-----SHHH--
T ss_pred EEEEECCCCCHH------------HHHHHHHHHhcCHHHHHHHhh-cCCCCCCcc-hhhh----hhhhh-----ChHH--
Confidence 999999999998 9999995 9999999999874 334434432 1211 22221 1111
Q ss_pred CCCCHHHHhhceeccCCC--HHHHHHHHHHHHHhhCC--C-cchHHHHHHHHHHH
Q 024049 212 GVPPAEILARCEFLEPLS--EATLSDYEWLVADLQKP--A-PVLMKRVQHYLSSL 261 (273)
Q Consensus 212 ~~p~~~~l~~~~~~~~~~--~~~~~~~~~~W~~ik~~--~-~~~~~~~~~~~~~~ 261 (273)
....+.+.+.......+ .+....+.+.++++... + .+.+++++..+.++
T Consensus 319 -~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~~~~~G~~t~eeal~~~~~~~~~i 372 (523)
T 3py7_A 319 -AATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDAALAAAQTNAAAM 372 (523)
T ss_dssp -HHHHHHHHTSEECCCSTTHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHCS
T ss_pred -HHHHHHHhcCccCCCCccHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhhh
Confidence 11123444444444433 33445566666665522 2 34566666665553
No 54
>3h3g_A Fusion protein of maltose-binding periplasmic DOM human parathyroid hormone receptor...; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli} PDB: 3c4m_A* 3l2j_A*
Probab=99.36 E-value=3.3e-12 Score=124.01 Aligned_cols=163 Identities=17% Similarity=0.128 Sum_probs=110.6
Q ss_pred CEEEEeCccccccCCCCCCChHHhcCc--cc--CCcEEeeCCh--HHHHHHHHHHhCCCCCC------------CChhhh
Q 024049 1 MVIAYKKSKFRKHNLAPIEDWKDLWRP--EL--AGRISMVNSP--REVIGSVLKYMGASYNS------------NNIDLQ 62 (273)
Q Consensus 1 ~gi~YN~~~v~~~g~~~p~SW~dL~dp--~~--kGki~~~d~~--~~~~~~al~~~G~~~~~------------~~~~~~ 62 (273)
.+|+||++++++ +|+||++|++. ++ +|+..+.-.. ...+...+...|..... .+.+
T Consensus 115 ~~l~YNkdl~~~----~P~Twdel~~~a~~l~~~g~~~~~~~~~~~~~~~~~~~~~Gg~~~~~~~~~~~~~~~~~~~~-- 188 (539)
T 3h3g_A 115 LSLIYNKDLLPN----PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNA-- 188 (539)
T ss_dssp CEEEEETTTCSS----CCSBGGGHHHHHHHHHTTTCEEECCCSSSHHHHHHHHHHTTCEEEEEETTEEEEEEEESSSH--
T ss_pred eEEEEEhHHhcC----CCCCHHHHHHHHHHHHhCCCceEEeecCcHHHHHHHHHhcCCceeecccccccccccCCCCH--
Confidence 479999999985 89999999974 33 4655443211 11222233455543211 1111
Q ss_pred hhchHHHHHHHHHHHhcc--cc-cccchhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEE-ecC-----CCceeeeee
Q 024049 63 VAGGKISVQQNLALLANQ--AR-LFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV-VPK-----SGASLWADL 133 (273)
Q Consensus 63 ~~~~~~~~~~~L~~l~~~--v~-~~~~~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~-~P~-----eG~~~~~d~ 133 (273)
...++.+.+.++... +. ....++..+.|.+|++.|.+.++.........+.+++++ +|. .+...+..+
T Consensus 189 ---~~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~Gk~am~~~g~w~~~~~~~~~~~~~~~~~P~~~g~~~~~~~g~~~ 265 (539)
T 3h3g_A 189 ---GAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLS 265 (539)
T ss_dssp ---HHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTSEEEEEECGGGHHHHHHHTCCEEEECCCBBTTBCCCCEEEEEE
T ss_pred ---HHHHHHHHHHHHHHcCCCCCCCChhHHHHHHHCCCeeEEEecchhhhhHHHcCCcEEEEECCCCCCCCCcccccceE
Confidence 245677777777643 11 122245689999999999999888877777677888887 575 124567788
Q ss_pred EEEecCCCCcccccCCCCCCChHHHHHHHH-HHhcHHHhchhhhhhcCCCCCC
Q 024049 134 WAIPAASRLETKQIGGRVRGPSPLIHQWIE-FCLQTARALPFKQEVIPGASPS 185 (273)
Q Consensus 134 ~~I~k~a~~~~~~~~~~~~~~~~~A~~FIn-fllspe~q~~~~~~~~~~~~p~ 185 (273)
++|+++++|++ +|.+||+ ||+++|.|..+.. ..++..|.
T Consensus 266 ~~I~~~s~~~e------------aA~~Fl~~~l~s~e~q~~~~~-~~~~~~p~ 305 (539)
T 3h3g_A 266 AGINAASPNKE------------LAKEFLENYLLTDEGLEAVNK-DKPLGAVA 305 (539)
T ss_dssp EEEBTTCSCHH------------HHHHHHHHTTTSHHHHHHHHH-HSCCCEES
T ss_pred EEEECCCCCHH------------HHHHHHHHHhcCHHHHHHHHh-cCCCCCcc
Confidence 99999999998 9999995 9999999998874 33443443
No 55
>2heu_A Sugar ABC transporter, sugar-binding protein; periplasmic binding protein, transport protein; 1.04A {Streptococcus pneumoniae} PDB: 2hq0_A 2i58_A* 2hfb_A
Probab=99.36 E-value=1.7e-12 Score=120.47 Aligned_cols=164 Identities=16% Similarity=0.203 Sum_probs=105.0
Q ss_pred EEEEeCccccccCCCCCCChHHhcC--cccC--CcEEeeCC---hH---HHHHHHHHHhCCCC------------C---C
Q 024049 2 VIAYKKSKFRKHNLAPIEDWKDLWR--PELA--GRISMVNS---PR---EVIGSVLKYMGASY------------N---S 56 (273)
Q Consensus 2 gi~YN~~~v~~~g~~~p~SW~dL~d--p~~k--Gki~~~d~---~~---~~~~~al~~~G~~~------------~---~ 56 (273)
++.||+++++++|+++|+||++|++ .+++ |...+... .. ..+...+...|+.. . .
T Consensus 130 ~l~Ynkdl~~~aGl~~P~Twdel~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~ 209 (401)
T 2heu_A 130 GIYYNKDKFEELGLKVPETWDEFEQLVKDIVAKGQTPFGIAGADAWTLNGYNQLAFATATGGGKEANQYLRYSQPNAIKL 209 (401)
T ss_dssp EEEEEHHHHHHHTCCCCCSHHHHHHHHHHHHHTTSCCBCCCTTCGGGGHHHHHHHHHHHHTSHHHHHHHHTSSCTTCCCT
T ss_pred EEEEeHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCcCeEecCccccchhhHHHHHHHHhcCCcCChHHHHHHHhcCCccc
Confidence 7899999999999999999999998 4554 43333211 11 11111122222210 0 1
Q ss_pred CChhhhhhchHHHHHHHHHHHhcc--c-c---cccchhHHHHhhcCcEEEEEeccccHHHHHhcC--CCcEEE-ecC--C
Q 024049 57 NNIDLQVAGGKISVQQNLALLANQ--A-R---LFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRM--SNVAVV-VPK--S 125 (273)
Q Consensus 57 ~~~~~~~~~~~~~~~~~L~~l~~~--v-~---~~~~~~~~~~~~~Gev~va~~~s~~~~~~~~~~--~~v~~~-~P~--e 125 (273)
.++ ...++.+++.++... + . ....++..+.|.+|++.|.+.++.....+...+ .+++++ +|. +
T Consensus 210 ~~~------~~~~al~~~~~l~~~g~~~~~~~~~~~~~~~~~f~~G~~am~~~g~~~~~~~~~~~~~~~~~~~~~P~~~~ 283 (401)
T 2heu_A 210 SDP------IMKDDIKVMDILRINGSKQKNWEGAGYTDVIGAFARGDVLMTPNGSWAITAINEQKPNFKIGTFMIPGKEK 283 (401)
T ss_dssp TSH------HHHHHHHHHHGGGSTTCBCTTGGGCCHHHHHHHHHTTSSSEEEEETTHHHHHHTTCCSSCEEEECBCCSST
T ss_pred CCH------HHHHHHHHHHHHHHCCCCCCCcCCCChHHHHHHHHcCCceEEecCcccHHHHHhhCcccceeEEECCCCCC
Confidence 122 245677778777642 1 1 112245678999999999888776655555443 357776 775 3
Q ss_pred Cce--ee-ee-eEEEecCCCCcccccCCCCCCChHHHHHHHHHHhcHHHhchhhhhhcCCCCC
Q 024049 126 GAS--LW-AD-LWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASP 184 (273)
Q Consensus 126 G~~--~~-~d-~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~~~~~~~~p 184 (273)
|.. +. .+ +++|+++++|++ +|.+||+|++++|.|..+... .++.++
T Consensus 284 g~~~~~~g~~~~~~i~~~s~~~e------------~A~~fi~~l~s~e~~~~~~~~-~g~~P~ 333 (401)
T 2heu_A 284 GQSLTVGAGDLAWSISATTKHPK------------EANAFVEYMTRPEVMQKYYDV-DGSPTA 333 (401)
T ss_dssp TCCBEEECBSSEEEEBTTCSCHH------------HHHHHHHHHTSHHHHHHHHHH-HCCCBC
T ss_pred CCcccccCCcceEEEECCCCCHH------------HHHHHHHHHcChHHHHHHHHh-cCCCCC
Confidence 432 22 35 599999999988 999999999999999988743 354433
No 56
>1r6z_P Chimera of maltose-binding periplasmic protein AN argonaute 2; deviant OB fold, RNAI, gene regulation; HET: MAL; 2.80A {Escherichia coli} SCOP: b.34.14.1 c.94.1.1
Probab=99.34 E-value=7e-12 Score=120.70 Aligned_cols=166 Identities=18% Similarity=0.188 Sum_probs=110.2
Q ss_pred CEEEEeCccccccCCCCCCChHHhcC--cccC--CcEEeeCChHH--HHHHHHHHhCCCCCC-----CCh-hhhh-hchH
Q 024049 1 MVIAYKKSKFRKHNLAPIEDWKDLWR--PELA--GRISMVNSPRE--VIGSVLKYMGASYNS-----NNI-DLQV-AGGK 67 (273)
Q Consensus 1 ~gi~YN~~~v~~~g~~~p~SW~dL~d--p~~k--Gki~~~d~~~~--~~~~al~~~G~~~~~-----~~~-~~~~-~~~~ 67 (273)
.++.||++++++ +|+||++|++ ++++ |++.+.....+ .+...+...|...-. .+. ...+ ....
T Consensus 114 ~~l~YNkdl~~~----~P~Twdel~~~a~~l~~~g~~g~~~~~~~~~~~~~~~~~~Gg~~~~~~~g~~~~~~~~~~~~~~ 189 (509)
T 1r6z_P 114 LSLIYNKDLLPN----PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGA 189 (509)
T ss_dssp CEEEEETTTCSS----CCSBGGGHHHHHHHHHHTTCEEECCCCSSHHHHHHHHHHTTCEEEEEETTEEEEEEEESSSHHH
T ss_pred eEEEEEhHhhcC----CCCCHHHHHHHHHHHHhCCcceeEecCCCcHHHHHHHHhcCCeecccccccccccccccCCHHH
Confidence 479999999986 8999999998 5554 77665432211 222234455653211 000 0000 0124
Q ss_pred HHHHHHHHHHhcc--cc-cccchhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEE-ecC-CC----ceeeeeeEEEec
Q 024049 68 ISVQQNLALLANQ--AR-LFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV-VPK-SG----ASLWADLWAIPA 138 (273)
Q Consensus 68 ~~~~~~L~~l~~~--v~-~~~~~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~-~P~-eG----~~~~~d~~~I~k 138 (273)
.++.+++.++... +. ....++..+.|.+|++.|.+.++.........+.+++++ +|. +| ...+.++++|++
T Consensus 190 ~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~Gk~am~~~g~w~~~~~~~~~~~~~~~~~P~~~g~~~~~~~~~~~~~I~~ 269 (509)
T 1r6z_P 190 KAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINA 269 (509)
T ss_dssp HHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTCEEEEEECGGGHHHHHHTTCCEEEECCCBBTTBCCCCEEEEEEEEEBT
T ss_pred HHHHHHHHHHHHcCCCCCCCChhHHHHHHHcCCeeEEEcCcchHHHHHhcCCceEEEeCCCCCCCCCcceecccEEEEEC
Confidence 5677777777542 11 112245678999999999888776665555567788887 786 33 346778899999
Q ss_pred CCCCcccccCCCCCCChHHHHHHH-HHHhcHHHhchhhhhhcCCCC
Q 024049 139 ASRLETKQIGGRVRGPSPLIHQWI-EFCLQTARALPFKQEVIPGAS 183 (273)
Q Consensus 139 ~a~~~~~~~~~~~~~~~~~A~~FI-nfllspe~q~~~~~~~~~~~~ 183 (273)
+++|++ +|.+|| +|+++||.|..+.. ..++.+
T Consensus 270 ~sk~~e------------aA~~fl~~~l~s~e~q~~~~~-~~g~~P 302 (509)
T 1r6z_P 270 ASPNKE------------LAKEFLENYLLTDEGLEAVNK-DKPLGA 302 (509)
T ss_dssp TCTTHH------------HHHHHHHHTTTSHHHHHHHHH-HSCCSE
T ss_pred CCCCHH------------HHHHHHHHHhcCHHHHHHHHH-hcCCCC
Confidence 999988 999999 99999999999875 345433
No 57
>2zxt_A Maltose-binding periplasmic protein, linker, MITO intermembrane space import AND...; disulfide bond, alpha helix, fusion, sugar transport; HET: MAL; 3.00A {Escherichia coli}
Probab=99.34 E-value=2.8e-12 Score=122.48 Aligned_cols=166 Identities=18% Similarity=0.188 Sum_probs=109.9
Q ss_pred CEEEEeCccccccCCCCCCChHHhcC--cccC--CcEEeeCChHH--HHHHHHHHhCCCCCC-----CCh-hhhh-hchH
Q 024049 1 MVIAYKKSKFRKHNLAPIEDWKDLWR--PELA--GRISMVNSPRE--VIGSVLKYMGASYNS-----NNI-DLQV-AGGK 67 (273)
Q Consensus 1 ~gi~YN~~~v~~~g~~~p~SW~dL~d--p~~k--Gki~~~d~~~~--~~~~al~~~G~~~~~-----~~~-~~~~-~~~~ 67 (273)
.+|.||++++++ +|+||++|++ ++++ |++.+...... .+...+...|..... .+. ...+ ....
T Consensus 113 ~~l~YNkdlf~~----~P~Twdel~~~a~~l~~~G~~g~~~~~~~~~~~~~~~~~~Gg~~~~~~~g~~d~~~~~~~~~~~ 188 (465)
T 2zxt_A 113 LSLIYNKDLLPN----PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGA 188 (465)
T ss_dssp CEEECBTTTBSS----CCSSSTTSHHHHTTSCSSSCCSBCCCSSSHHHHHHHHHHTTCEEEEEETTEEEEEEEESSSHHH
T ss_pred eEEEEEhHhhcC----CCcCHHHHHHHHHHHhcCCcceeEecCcchHHHHHHHHhcCCeecccccccccccccccCCHHH
Confidence 479999999986 8999999998 6776 66555432211 222234455653211 000 0000 0124
Q ss_pred HHHHHHHHHHhcc--cc-cccchhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEE-ecC-CC----ceeeeeeEEEec
Q 024049 68 ISVQQNLALLANQ--AR-LFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV-VPK-SG----ASLWADLWAIPA 138 (273)
Q Consensus 68 ~~~~~~L~~l~~~--v~-~~~~~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~-~P~-eG----~~~~~d~~~I~k 138 (273)
.++.+++.++... +. ....++..+.|.+|++.|.+.++.........+.+++++ +|. +| ...+..+++|++
T Consensus 189 ~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~Gk~am~~~g~w~~~~~~~~~~~~~~~~~P~~~g~~~~~~~~~~~~~I~~ 268 (465)
T 2zxt_A 189 KAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINA 268 (465)
T ss_dssp HHHHHHHHHHHHTTSSCTTCCHHHHHHHHHHTCCSBEEECTTTHHHHHHHTCCCCEECCCCGGGSCCCCEEEEEEEEEBT
T ss_pred HHHHHHHHHHHHcCCCCCCCCcchHHHHHHCCCeeEEEeCCchHHHHhhcCCceEEEeCCCCCCCCCccccccceEEEEC
Confidence 5677777777542 11 112245678999999999888776665555557788887 786 22 356778899999
Q ss_pred CCCCcccccCCCCCCChHHHHHHH-HHHhcHHHhchhhhhhcCCCC
Q 024049 139 ASRLETKQIGGRVRGPSPLIHQWI-EFCLQTARALPFKQEVIPGAS 183 (273)
Q Consensus 139 ~a~~~~~~~~~~~~~~~~~A~~FI-nfllspe~q~~~~~~~~~~~~ 183 (273)
+++|++ +|.+|| +|+++||.|..+.. ..++.+
T Consensus 269 ~sk~~e------------aA~~Fi~~~l~s~e~q~~~~~-~~g~~P 301 (465)
T 2zxt_A 269 ASPNKE------------LAKEFLENYLLTDEGLEAVNK-DKPLGA 301 (465)
T ss_dssp TCSCHH------------HHHHHHHHTTSSHHHHHHHHH-HSCCCE
T ss_pred CCCCHH------------HHHHHHHHHHcCHHHHHHHHH-hcCCCC
Confidence 999998 999999 99999999999874 345433
No 58
>3r26_A Molybdate-binding periplasmic protein; protein binding; 1.70A {Escherichia coli} SCOP: c.94.1.1 PDB: 3axf_A 1amf_A 1wod_A
Probab=99.33 E-value=1.1e-11 Score=108.07 Aligned_cols=134 Identities=16% Similarity=0.233 Sum_probs=96.2
Q ss_pred CEEEEeCccc-cccCCCCCCChHHhcCcccCCcEEeeCChHHHHHHH----HHHhCCCCCCCChhhhhhchHHHHHHHHH
Q 024049 1 MVIAYKKSKF-RKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSV----LKYMGASYNSNNIDLQVAGGKISVQQNLA 75 (273)
Q Consensus 1 ~gi~YN~~~v-~~~g~~~p~SW~dL~dp~~kGki~~~d~~~~~~~~a----l~~~G~~~~~~~~~~~~~~~~~~~~~~L~ 75 (273)
++|+||++.- ++.++..+++|.+|+++ +||++.|+.....|.+ |..+|. +.
T Consensus 89 lvl~~~~~~~~~~~~i~~~~~l~~l~~~---~~iai~~p~~~p~G~~a~~~l~~~g~---------------------~~ 144 (237)
T 3r26_A 89 LVVVAPKASVQKDFTIDSKTNWTSLLNG---GRLAVGDPEHVPAGIYAKEALQKLGA---------------------WD 144 (237)
T ss_dssp EEEEEESSCCCCCCCCSTTCCHHHHHTT---CCEEEECTTTCHHHHHHHHHHHHTTC---------------------HH
T ss_pred EEEEEeCCCCcccccccchHhHHHhcCC---CeEEEeCCCCCChHHHHHHHHHHcCC---------------------HH
Confidence 3788998752 22233357899999874 7999998644334432 222221 23
Q ss_pred HHhccccccc-c-hhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEE--EecCCCceeeeeeEEEecCCCCcccccCCCC
Q 024049 76 LLANQARLFD-S-THYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAV--VVPKSGASLWADLWAIPAASRLETKQIGGRV 151 (273)
Q Consensus 76 ~l~~~v~~~~-~-~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~--~~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~ 151 (273)
++++++. +. + .+..+.+.+||+++|+.|.+++.. ...+.+ .+|+++...+...++|+++++| +
T Consensus 145 ~l~~~~~-~~~~~~~~~~~v~~Ge~d~gi~~~s~a~~----~~~~~~v~~~P~~~~~~~~~~~ai~k~~~~-~------- 211 (237)
T 3r26_A 145 TLSPKLA-PAEDVRGALALVERNEAPLGIVYGSDAVA----SKGVKVVATFPEDSHKKVEYPVAVVEGHNN-A------- 211 (237)
T ss_dssp HHGGGEE-EESSHHHHHHHHHTTSSSEEEEEHHHHHH----CSSEEEEEECCGGGSCCEEEEEEEBTTCCS-H-------
T ss_pred HhhhcEE-ecCCHHHHHHHHHcCCCCEEEEEeccccc----CCCCeEEEECCcccCCeeeeeEEEEcCCCC-H-------
Confidence 4456553 33 2 467789999999999999887754 234555 5899998888889999999999 5
Q ss_pred CCChHHHHHHHHHHhcHHHhchhhh
Q 024049 152 RGPSPLIHQWIEFCLQTARALPFKQ 176 (273)
Q Consensus 152 ~~~~~~A~~FInfllspe~q~~~~~ 176 (273)
+|++||+||+|||.|..+.+
T Consensus 212 -----~A~~Fi~fl~S~eaq~i~~~ 231 (237)
T 3r26_A 212 -----TVKAFYDYLKGPQAAEIFKR 231 (237)
T ss_dssp -----HHHHHHHHHTSHHHHHHHHH
T ss_pred -----HHHHHHHHHcCHHHHHHHHH
Confidence 79999999999999998863
No 59
>3f5f_A Maltose-binding periplasmic protein, heparan sulfate 2-O-sulfotransferase 1; maltose binding protein, fusion, heparan sulfate biosynthesis; HET: GLC A3P; 2.65A {Escherichia coli k-12}
Probab=99.32 E-value=2.9e-11 Score=120.21 Aligned_cols=167 Identities=16% Similarity=0.133 Sum_probs=112.4
Q ss_pred CEEEEeCccccccCCCCCCChHHhcCc--cc--CCcEEeeCCh--HHHHHHHHHHhCCCCCCCC--------hhhhhhch
Q 024049 1 MVIAYKKSKFRKHNLAPIEDWKDLWRP--EL--AGRISMVNSP--REVIGSVLKYMGASYNSNN--------IDLQVAGG 66 (273)
Q Consensus 1 ~gi~YN~~~v~~~g~~~p~SW~dL~dp--~~--kGki~~~d~~--~~~~~~al~~~G~~~~~~~--------~~~~~~~~ 66 (273)
.++.||++++++ +|+||++|++. ++ +|+..+.-.. ...+...+...|......+ ..+. ...
T Consensus 113 ~~l~YNkdl~~~----~P~Twdel~~~a~~l~~~g~~~~~~~~~~~~~~~~~~~~~Gg~~~~~~~~~~~~~~~~~~-~~~ 187 (658)
T 3f5f_A 113 LSLIYNKDLLPN----PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVD-NAG 187 (658)
T ss_dssp CEEEEETTTCSS----CCSBGGGHHHHHHHHHTTTCEEECCCSSSHHHHHHHHHHTTCEESCCCCSSSEEECEESS-SHH
T ss_pred EEEEEEhHHhhC----CCCCHHHHHHHHHHHHhCCCCeEEeecCchHHHHHHHHhcCCeeeecCCCcccccccccC-CHH
Confidence 479999999985 89999999985 22 4655443211 1122233445565321110 0000 012
Q ss_pred HHHHHHHHHHHhcc--cc-cccchhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEE-ecCC-----CceeeeeeEEEe
Q 024049 67 KISVQQNLALLANQ--AR-LFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV-VPKS-----GASLWADLWAIP 137 (273)
Q Consensus 67 ~~~~~~~L~~l~~~--v~-~~~~~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~-~P~e-----G~~~~~d~~~I~ 137 (273)
..++.+.+.++... +. ....++..+.|.+|++.|.+.++.........+.+++++ +|.. +...+.++++|+
T Consensus 188 ~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~Gk~am~~~g~~~~~~~~~~~~~~~~~~~P~~~g~~~~~~~g~~~~~I~ 267 (658)
T 3f5f_A 188 AKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGIN 267 (658)
T ss_dssp HHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTSEEEEEECGGGHHHHHHTTCCEEEECCCBBTTBCCCCEEEEEEEEEB
T ss_pred HHHHHHHHHHHHHcCCCCCCCCchHHHHHHHCCCEEEEEechhhhHHHHhcCCCEEEEECCCCCCCCCccccCceEEEEE
Confidence 45677777777643 11 122346789999999999999988887777778888887 5752 236678899999
Q ss_pred cCCCCcccccCCCCCCChHHHHHHHH-HHhcHHHhchhhhhhcCCCCCC
Q 024049 138 AASRLETKQIGGRVRGPSPLIHQWIE-FCLQTARALPFKQEVIPGASPS 185 (273)
Q Consensus 138 k~a~~~~~~~~~~~~~~~~~A~~FIn-fllspe~q~~~~~~~~~~~~p~ 185 (273)
++++|++ +|.+||+ ||++||.|..+.. ..++..|.
T Consensus 268 ~~sk~~e------------aA~~Fl~~~l~s~e~q~~~~~-~~~~~~p~ 303 (658)
T 3f5f_A 268 AASPNKE------------LAKEFLENYLLTDEGLEAVNK-DKPLGAVA 303 (658)
T ss_dssp TTCTTHH------------HHHHHHHHTTSSHHHHHHHHH-HSCCSEES
T ss_pred CCCCCHH------------HHHHHHHHHhcCHHHHHHHHh-cCCCCCCc
Confidence 9999998 9999997 9999999999875 33443443
No 60
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A
Probab=99.31 E-value=3e-11 Score=116.65 Aligned_cols=163 Identities=16% Similarity=0.118 Sum_probs=110.7
Q ss_pred CEEEEeCccccccCCCCCCChHHhcCc--cc--CCcEEeeCCh--HHHHHHHHHHhCCCCCC------------CChhhh
Q 024049 1 MVIAYKKSKFRKHNLAPIEDWKDLWRP--EL--AGRISMVNSP--REVIGSVLKYMGASYNS------------NNIDLQ 62 (273)
Q Consensus 1 ~gi~YN~~~v~~~g~~~p~SW~dL~dp--~~--kGki~~~d~~--~~~~~~al~~~G~~~~~------------~~~~~~ 62 (273)
.+|.||++++++ +|+||++|++. ++ +|+..+.-.. ...+...+...|..... .+.+
T Consensus 113 ~~l~ynkdl~~~----~P~Twdel~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-- 186 (581)
T 3o3u_N 113 LSLIYNKDLLPN----PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNA-- 186 (581)
T ss_dssp CEEEEETTTCSS----CCSBGGGHHHHHHHHHTTTCEEECCCCSSHHHHHHHHHHTTCEEEEEETTEEEEEEEESSSH--
T ss_pred eEEEEEhHHhhc----CCCCHHHHHHHHHHHhhCCCceEEeecCChHHHHHHHHhcCCceeecccCcccccccccCCH--
Confidence 479999999985 89999999984 32 4655443211 11222233445543211 1111
Q ss_pred hhchHHHHHHHHHHHhcc--cc-cccchhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEE-ecCC-----Cceeeeee
Q 024049 63 VAGGKISVQQNLALLANQ--AR-LFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV-VPKS-----GASLWADL 133 (273)
Q Consensus 63 ~~~~~~~~~~~L~~l~~~--v~-~~~~~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~-~P~e-----G~~~~~d~ 133 (273)
...++++++.++... +. ....++..+.|.+|++.|.+.++.........+.+++++ +|.. +...+.++
T Consensus 187 ---~~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~ 263 (581)
T 3o3u_N 187 ---GAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLS 263 (581)
T ss_dssp ---HHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTSEEEEEECGGGHHHHHHHTCCEEEECCCBBTTBCCCCEEEEEE
T ss_pred ---HHHHHHHHHHHHHhcCcCCCCCChhhHhhHHhcCCEEEEeccchhhchHhhcCCceEEEECCCCCCCCCcccccceE
Confidence 245677777777643 11 122246789999999999999888877776677888886 5752 23567789
Q ss_pred EEEecCCCCcccccCCCCCCChHHHHHHHH-HHhcHHHhchhhhhhcCCCCCC
Q 024049 134 WAIPAASRLETKQIGGRVRGPSPLIHQWIE-FCLQTARALPFKQEVIPGASPS 185 (273)
Q Consensus 134 ~~I~k~a~~~~~~~~~~~~~~~~~A~~FIn-fllspe~q~~~~~~~~~~~~p~ 185 (273)
++|+++++|++ +|.+||+ ||++||.|..+.. ..++..|.
T Consensus 264 ~~i~~~s~~~e------------~A~~fl~~~l~s~e~~~~~~~-~~~~~~p~ 303 (581)
T 3o3u_N 264 AGINAASPNKE------------LAKEFLENYLLTDEGLEAVNK-DKPLGAVA 303 (581)
T ss_dssp EEEBTTCSCHH------------HHHHHHHHTTSSHHHHHHHHH-HSCCSEES
T ss_pred EEEECCCCCHH------------HHHHHHHHHhcCHHHHHHHhh-cCCCCccc
Confidence 99999999998 9999995 9999999999875 33443443
No 61
>2hxw_A Major antigenic peptide PEB3; periplasmic binding protein, N-glycosylation, structural genomics; HET: FLC; 1.60A {Campylobacter jejuni} PDB: 3fjm_A 3fjg_A 3fir_A* 3fj7_A*
Probab=99.30 E-value=5.2e-12 Score=108.57 Aligned_cols=134 Identities=14% Similarity=0.135 Sum_probs=88.3
Q ss_pred EEEEeCccccccCCCCCCChHHhcCcccCCcEEeeCChH--HH--HHHH-HHHhCCCCCCCChhhhhhchHHHHHHHHHH
Q 024049 2 VIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPR--EV--IGSV-LKYMGASYNSNNIDLQVAGGKISVQQNLAL 76 (273)
Q Consensus 2 gi~YN~~~v~~~g~~~p~SW~dL~dp~~kGki~~~d~~~--~~--~~~a-l~~~G~~~~~~~~~~~~~~~~~~~~~~L~~ 76 (273)
+|+||++. + ..|+||+||++|++ ||++.|+.. +. .+.. ...+ . .. . .+.+.+
T Consensus 84 ~l~~~~~~-~----~~~~sw~dL~~~~~--~i~~~d~~~~~~~~~~g~~~~~~~-~---~~--~----------~~~~~~ 140 (237)
T 2hxw_A 84 IILTQKGN-P----LKIKGLKDLANKKV--RIVVPEGAGKSNTSGTGVWEDMIG-R---TQ--D----------IKTIQN 140 (237)
T ss_dssp EEEESTTC-T----TCCCSHHHHHHSCC--CEEECCCTTSSCCTTTTHHHHHHH-T---TC--C----------HHHHHH
T ss_pred EEEEeCCC-C----CCCCCHHHhcCCCc--EEEecCCCCCCcccchHHHHHHHH-H---cc--C----------HHHHHH
Confidence 68888874 2 25799999999977 699987521 01 1111 1111 0 00 0 244566
Q ss_pred Hhcccccccc--hhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEEecCCCce-eeee-eEEEecCCCCcccccCCCCC
Q 024049 77 LANQARLFDS--THYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGAS-LWAD-LWAIPAASRLETKQIGGRVR 152 (273)
Q Consensus 77 l~~~v~~~~~--~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~~P~eG~~-~~~d-~~~I~k~a~~~~~~~~~~~~ 152 (273)
+++++..+.. .+..+.+.+|++++|+.|.+++.. +.+..+++|.+|.. .+.+ +++|++++ ++
T Consensus 141 l~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~-------- 206 (237)
T 2hxw_A 141 FRNNIVAFVPNSGSARKLFAQDQADAWITWIDWSKS----NPDIGTAVAIEKDLVVYRTFNVIAKEGA--SK-------- 206 (237)
T ss_dssp HHHTEEEECCCCTTC--CTTTTTCSEEEEEHHHHHH----STTSSEEEECCTTTCCEEEEEEEECTTC--CH--------
T ss_pred HhhceEEEcCCHHHHHHHHHcCCeeEEEEechhhhc----CCCceEEEecCCceeEEeeeeEEEccCC--hH--------
Confidence 7777754543 345667899999999999887643 23455667766543 3444 78999988 55
Q ss_pred CChHHHHHHHHHHhcHHHhchhhh
Q 024049 153 GPSPLIHQWIEFCLQTARALPFKQ 176 (273)
Q Consensus 153 ~~~~~A~~FInfllspe~q~~~~~ 176 (273)
+|++|||||+|||+|+.+.+
T Consensus 207 ----~A~~Fi~fl~s~e~q~~~~~ 226 (237)
T 2hxw_A 207 ----ETQDFIAYLSSKEAKEIFKK 226 (237)
T ss_dssp ----HHHHHHHHTTSHHHHHHHHH
T ss_pred ----HHHHHHHHHcCHHHHHHHHH
Confidence 89999999999999998874
No 62
>3mp6_A MBP, SGF29, maltose-binding periplasmic protein, linker, SAGA associated factor 29; histone, tudor domain, histone binding protei; HET: MLY MAL; 1.48A {Escherichia coli} PDB: 3mp1_A* 3mp8_A*
Probab=99.30 E-value=1.4e-11 Score=119.32 Aligned_cols=163 Identities=16% Similarity=0.118 Sum_probs=111.5
Q ss_pred CEEEEeCccccccCCCCCCChHHhcCc--cc--CCcEEeeCCh--HHHHHHHHHHhCCCCCC------------CChhhh
Q 024049 1 MVIAYKKSKFRKHNLAPIEDWKDLWRP--EL--AGRISMVNSP--REVIGSVLKYMGASYNS------------NNIDLQ 62 (273)
Q Consensus 1 ~gi~YN~~~v~~~g~~~p~SW~dL~dp--~~--kGki~~~d~~--~~~~~~al~~~G~~~~~------------~~~~~~ 62 (273)
.+|.||+++|++ +|+||++|++. ++ +|+..+.-.. ...+...+...|..... .+.+
T Consensus 114 ~~l~YNkdl~~~----~P~Twdel~~~a~~l~~~g~~~~~~~~~~~~~~~~~~~~~Gg~~~~~~~~~~d~~~~~~~~~-- 187 (522)
T 3mp6_A 114 LSLIYNKDLLPN----PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNA-- 187 (522)
T ss_dssp CEEEEETTTCSS----CCSBGGGHHHHHHHHHTTTCEEECCCSSSGGGTHHHHHHTTCEEEEEETTEEEEEEEETTSH--
T ss_pred eEEEEEhHhhcc----CCcCHHHHHHHHHHHHhCCCceEEeecCchHHHHHHHHhcCCceeeccccccccCccccCCH--
Confidence 479999999985 89999999984 22 4655443211 11222334455653211 1111
Q ss_pred hhchHHHHHHHHHHHhcc--cc-cccchhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEE-ecCC-----Cceeeeee
Q 024049 63 VAGGKISVQQNLALLANQ--AR-LFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV-VPKS-----GASLWADL 133 (273)
Q Consensus 63 ~~~~~~~~~~~L~~l~~~--v~-~~~~~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~-~P~e-----G~~~~~d~ 133 (273)
...++.+++.++... +. ....++..+.|.+|++.|.+.++.........+.+++++ +|.. +...+.++
T Consensus 188 ---~~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~Gk~am~~~g~~~~~~~~~~~~~~~~~~~P~~~g~~~~~~~g~~~ 264 (522)
T 3mp6_A 188 ---GAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLS 264 (522)
T ss_dssp ---HHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTSEEEEEECGGGHHHHHHSSCCEEEECCCBBTTBCCCCEEEEEE
T ss_pred ---HHHHHHHHHHHHHHcCCCCCCCChHHHhhHHhcCCEeEEeccCcchhhhhhcCCceEEEECCCCCCCCCcccccceE
Confidence 245677777777653 11 122346789999999999999988887777777888887 6752 24567789
Q ss_pred EEEecCCCCcccccCCCCCCChHHHHHHHH-HHhcHHHhchhhhhhcCCCCCC
Q 024049 134 WAIPAASRLETKQIGGRVRGPSPLIHQWIE-FCLQTARALPFKQEVIPGASPS 185 (273)
Q Consensus 134 ~~I~k~a~~~~~~~~~~~~~~~~~A~~FIn-fllspe~q~~~~~~~~~~~~p~ 185 (273)
++|+++++|++ +|.+||+ ||+++|.|..+.. ..++..|.
T Consensus 265 ~~I~~~sk~~e------------aA~~Fi~~~l~s~e~q~~~~~-~~~~~~p~ 304 (522)
T 3mp6_A 265 AGINAASPNKE------------LAKEFLENYLLTDEGLEAVNK-DKPLGAVA 304 (522)
T ss_dssp EEEBTTCTTHH------------HHHHHHHHTTSSHHHHHHHHH-HSCCSEES
T ss_pred EEEECCCCCHH------------HHHHHHHHHhcCHHHHHHHHh-cCCCCccc
Confidence 99999999998 9999995 9999999999875 33443443
No 63
>3osq_A Maltose-binding periplasmic protein, green fluore protein; engineered protein, sensor protein, fluorescent protein, MBP maltose sensor; HET: C12 MAL; 1.90A {Escherichia coli}
Probab=99.30 E-value=1.7e-11 Score=122.47 Aligned_cols=171 Identities=16% Similarity=0.071 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHhcc--cc-cccchhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEE-ecC-----CCceeeeeeEEEe
Q 024049 67 KISVQQNLALLANQ--AR-LFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV-VPK-----SGASLWADLWAIP 137 (273)
Q Consensus 67 ~~~~~~~L~~l~~~--v~-~~~~~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~-~P~-----eG~~~~~d~~~I~ 137 (273)
..++.+++.++... +. ....++..+.|.+|++.+.+.++.....+...+.+++++ +|. .+...+..+++|+
T Consensus 470 ~~eal~~l~~l~~~G~~~~~~~~~~~~~~F~sGkvam~~~g~w~~~~~~~~~~~~gvaplP~~~g~~~~~~~gg~~~~I~ 549 (661)
T 3osq_A 470 AKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGIN 549 (661)
T ss_dssp HHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTSEEEEEECGGGHHHHHHHTCCEEEECCCBBTTBCCCCEEEEEEEEEB
T ss_pred HHHHHHHHHHHHHCCCCCCCCCchHHHHHHHCCCeEEEEeChhHHHHHHhcCCCEEEEeCCCCCCCCCcccccceEEEEE
Confidence 34666777776542 11 112246778999999999999888877776677788887 675 3567778899999
Q ss_pred cCCCCcccccCCCCCCChHHHHHHHH-HHhcHHHhchhhhhhcCCCCCChhhhhccCCChHHhcCCCCCCCCcccCCCCH
Q 024049 138 AASRLETKQIGGRVRGPSPLIHQWIE-FCLQTARALPFKQEVIPGASPSALETTLVKLPEELLKGKPSQDTNLIVGVPPA 216 (273)
Q Consensus 138 k~a~~~~~~~~~~~~~~~~~A~~FIn-fllspe~q~~~~~~~~~~~~p~~~~~a~~~l~~e~~~~~~~~~~~l~~~~p~~ 216 (273)
++++|++ +|.+||+ |+++||.|..+.. ..++.+|+. .... +++.++ |.+ ..-.
T Consensus 550 k~Skn~e------------aA~~Fl~~flts~E~q~~~~~-~~g~~~p~~-~~~~----~~~~~~-----P~~---~~~~ 603 (661)
T 3osq_A 550 AASPNKE------------LAKEFLENYLLTDEGLEAVNK-DKPLGAVAL-KSYE----EELVKD-----PRI---AATM 603 (661)
T ss_dssp TTCSCHH------------HHHHHHHHTTSSHHHHHHHHH-HSCCCEESB-HHHH----HHHTTS-----HHH---HHHH
T ss_pred CCCCCHH------------HHHHHHHHHhcCHHHHHHHHH-hCCCCCCcc-HHHH----HHHhhC-----hHH---HHHH
Confidence 9999998 9999999 9999999999874 445545542 2221 333221 111 1113
Q ss_pred HHHhhceeccCCC--HHHHHHHHHHHHHhhCC--C-cchHHHHHHHHHHHHH
Q 024049 217 EILARCEFLEPLS--EATLSDYEWLVADLQKP--A-PVLMKRVQHYLSSLIQ 263 (273)
Q Consensus 217 ~~l~~~~~~~~~~--~~~~~~~~~~W~~ik~~--~-~~~~~~~~~~~~~~~~ 263 (273)
+.++........+ .+..+.+.+.++++-.- + .+.++++|..+.++|+
T Consensus 604 e~l~~a~~~P~~p~~~~i~~~l~~~l~~vl~G~~~peeAL~~a~~~i~~~i~ 655 (661)
T 3osq_A 604 ENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDEDLKDAQTRITKGSH 655 (661)
T ss_dssp HHHHHSEECCCCTTHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHC----
T ss_pred HHHhhCccCCCCCcHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 4455555444433 34445566666665432 2 4566666666655554
No 64
>1eu8_A Trehalose/maltose binding protein; protein-carbohydrate complex, MBP 2 fold, ABC transporter fold, thermophilic protein; HET: TRE; 1.90A {Thermococcus litoralis} SCOP: c.94.1.1
Probab=99.29 E-value=7.2e-11 Score=109.52 Aligned_cols=164 Identities=15% Similarity=0.145 Sum_probs=100.5
Q ss_pred CEEEEeCccccccCC-CCCCChHHhcCc--ccC--------CcEEe--eCChHH----HHHHHHHHhCCCCCC-CChh--
Q 024049 1 MVIAYKKSKFRKHNL-APIEDWKDLWRP--ELA--------GRISM--VNSPRE----VIGSVLKYMGASYNS-NNID-- 60 (273)
Q Consensus 1 ~gi~YN~~~v~~~g~-~~p~SW~dL~dp--~~k--------Gki~~--~d~~~~----~~~~al~~~G~~~~~-~~~~-- 60 (273)
.++.||+++|+++|+ ++|+||++|.+- +++ ++..+ ...... .+...+...|....+ .+..
T Consensus 124 ~~l~Ynkdlf~~aGl~~~P~Twdel~~~a~~l~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~Gg~~~~~~~g~~~ 203 (409)
T 1eu8_A 124 GLLYYRKDLLEKYGYSKPPETWQELVEMAQKIQSGERETNPNFWGFVWQGKQYEGLVCDFVEYVYSNGGSLGEFKDGKWV 203 (409)
T ss_dssp CEEEEEHHHHHHTTCCSCCSBHHHHHHHHHHHHHHHTTTCTTCEEEECCCSSSHHHHHHHHHHHHTTTCCSEEEETTEEE
T ss_pred eEEEEEHHHHHhcCCCCCCCCHHHHHHHHHHHHhcccCCCCCcceEEEecCCCcchhhHHHHHHHhcCCceeccccCccc
Confidence 378999999999995 799999999862 221 13333 222111 122233445654311 0100
Q ss_pred hhh-hchHHHHHHHHHHHh-cc--cc-----cccchhHHHHhhcCcEEEEEeccccHHHHHhc----CCCcEEE-ecC--
Q 024049 61 LQV-AGGKISVQQNLALLA-NQ--AR-----LFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKR----MSNVAVV-VPK-- 124 (273)
Q Consensus 61 ~~~-~~~~~~~~~~L~~l~-~~--v~-----~~~~~~~~~~~~~Gev~va~~~s~~~~~~~~~----~~~v~~~-~P~-- 124 (273)
..+ .....++.+.+.++. .. +. .+...+..+.|.+|++.|.+.++......... +.+++++ +|.
T Consensus 204 ~~~~~~~~~~al~~~~~l~~~~g~~~~~~~~~~~~~~~~~~f~~Gk~am~~~g~w~~~~~~~~~~~~~~~~~~~~~P~~~ 283 (409)
T 1eu8_A 204 PTLNKPENVEALQFMVDLIHKYKISPPNTYTEMTEEPVRLMFQQGNAAFERNWPYAWGLHNADDSPVKGKVGVAPLPHFP 283 (409)
T ss_dssp ECTTCHHHHHHHHHHHHHHHTSCCSCGGGGTTCCHHHHHHHHHTTCEEEEEECTHHHHHHTSTTCTTTTCEEEECCCBCT
T ss_pred eeecCHHHHHHHHHHHHHHhhcCcCCCcccccCCHHHHHHHHhCCCEEEEecCHHHhhccCCCCccccCceEEEeCCCCC
Confidence 000 012456677777765 32 11 11223567899999999988876554444322 2357765 563
Q ss_pred CC---ceeeeeeEEEecCCCCcccccCCCCCCChHHHHHHHHHHhcHHHhchhhh
Q 024049 125 SG---ASLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQ 176 (273)
Q Consensus 125 eG---~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~ 176 (273)
.| ......+++|+++|+|++ +|.+||+||++++.|..+..
T Consensus 284 ~~~~~~~~gg~~~~i~~~s~~~e------------~A~~fl~~l~s~e~~~~~~~ 326 (409)
T 1eu8_A 284 GHKSAATLGGWHIGISKYSDNKA------------LAWEFVKFVESYSVQKGFAM 326 (409)
T ss_dssp TSCCCCBEEEEEEEEBTTCSCHH------------HHHHHHHHHTSHHHHHHHHH
T ss_pred CCCcccccCceeEEecCCCCCHH------------HHHHHHHHHhCHHHHHHHHH
Confidence 22 233445799999999988 99999999999999988874
No 65
>3i3v_A Probable secreted solute-binding lipoprotein; transporter, PSI-II, structural genomics, protein structure initiative; 2.30A {Streptomyces coelicolor}
Probab=99.28 E-value=1.4e-12 Score=120.82 Aligned_cols=161 Identities=13% Similarity=0.109 Sum_probs=100.9
Q ss_pred EEEEeCccccccCCC-CCCChHHhcCc--cc--CCcEEee--CChHHH---HHHHHHHh-CCC--------CCCCChhhh
Q 024049 2 VIAYKKSKFRKHNLA-PIEDWKDLWRP--EL--AGRISMV--NSPREV---IGSVLKYM-GAS--------YNSNNIDLQ 62 (273)
Q Consensus 2 gi~YN~~~v~~~g~~-~p~SW~dL~dp--~~--kGki~~~--d~~~~~---~~~al~~~-G~~--------~~~~~~~~~ 62 (273)
++.||+++++++|++ +|+||++|++- ++ +|...+. .+.... +...+... |.+ ..-.++
T Consensus 127 ~l~Ynkdl~~~~G~~~~P~Twdel~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--- 203 (405)
T 3i3v_A 127 PVAYNRALLDRAGVDAIPTTGDQLIAAARKLRAKGIAPVTVGGNDWTGQKLLAQIIQTFLSQDEARHVYSTGDFGVR--- 203 (405)
T ss_dssp CEEEEHHHHHHHTCCSCCCBHHHHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHHHGGGCCHHHHHHHHHHTCTTSH---
T ss_pred EEEEeHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCceeeEecCCCCchHHHHHHHHHHccChHHHHHhhcCCCCCCH---
Confidence 689999999999998 89999999874 33 3543332 211111 11111111 110 011122
Q ss_pred hhchHHHHHHHHHHHhcc--c----ccccchhHHHHhhcCcEEEEEeccccHHHHH-hcCCCcEEE-ec--C-CCc--ee
Q 024049 63 VAGGKISVQQNLALLANQ--A----RLFDSTHYLKAFGIGDVWVAVGWSSDVLPAV-KRMSNVAVV-VP--K-SGA--SL 129 (273)
Q Consensus 63 ~~~~~~~~~~~L~~l~~~--v----~~~~~~~~~~~~~~Gev~va~~~s~~~~~~~-~~~~~v~~~-~P--~-eG~--~~ 129 (273)
...++.+++.++.+. + ..+..++..+.|.+|++.|.+.++....... ..+.++++. +| . +|. ..
T Consensus 204 ---~~~~al~~~~~l~~~g~~~~~~~~~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~ 280 (405)
T 3i3v_A 204 ---GARLGIEYFAHLRDAGVFADKAQGLTSDSMTTQFNTEEAAVQSAMSSALAKVPEKVAGHTEVGGWPLADGAAHDGPT 280 (405)
T ss_dssp ---HHHHHHHHHHHHHHTTCBCTTGGGCCHHHHHHHHHTTSEEEEECCHHHHTTSCHHHHHTEEEECBCBCTTCSSSSCE
T ss_pred ---HHHHHHHHHHHHHHCCCcCCCcccCCHHHHHHHHhcCCeEEEEeCcEehhhhhhccccCCcEEeCCCCCCCCCCCCc
Confidence 245677778777642 1 1122346789999999999888766554332 123456654 34 2 233 33
Q ss_pred ee-----eeEEEecCC-CCcccccCCCCCCChHHHHHHHHHHhcHHHhchhhhhhcCC
Q 024049 130 WA-----DLWAIPAAS-RLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQEVIPG 181 (273)
Q Consensus 130 ~~-----d~~~I~k~a-~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~~~~~~ 181 (273)
++ .+++|++++ +|++ +|.+||+||++||.|..+... .++
T Consensus 281 ~~~~~~~~~~~i~~~s~~~~e------------~A~~fl~~l~s~e~q~~~~~~-~g~ 325 (405)
T 3i3v_A 281 VIRAYTLIGFWISPNGVRKIE------------QVEKFLRFMYRPDVVARFVTE-SGR 325 (405)
T ss_dssp EEEESCSSEEEECHHHHTTHH------------HHHHHHHHHTSHHHHHHHHHH-HCC
T ss_pred eEeccCceEEEEeCCchhhHH------------HHHHHHHHHhCHHHHHHHHHh-cCC
Confidence 33 569999999 9988 999999999999999999853 354
No 66
>4b3n_A Maltose-binding periplasmic protein, tripartite motif-containing protein 5; sugar binding protein-ligase complex; HET: MAL MES; 3.30A {Escherichia coli} PDB: 2lm3_A
Probab=99.25 E-value=2.8e-11 Score=119.24 Aligned_cols=155 Identities=15% Similarity=0.120 Sum_probs=103.5
Q ss_pred CEEEEeCccccccCCCCCCChHHhcCc----ccCCcEEeeC--ChHHHHHHHHHHhCCCCC-C-----------CChhhh
Q 024049 1 MVIAYKKSKFRKHNLAPIEDWKDLWRP----ELAGRISMVN--SPREVIGSVLKYMGASYN-S-----------NNIDLQ 62 (273)
Q Consensus 1 ~gi~YN~~~v~~~g~~~p~SW~dL~dp----~~kGki~~~d--~~~~~~~~al~~~G~~~~-~-----------~~~~~~ 62 (273)
.+|.||++++++ +|+||++|.+- +-+|+..+.- .........+...|+... . .+.+
T Consensus 127 ~~l~YNkdlf~e----~P~TwdEl~~~akklk~~g~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~g~~~~~~~~~~~~-- 200 (602)
T 4b3n_A 127 LSLIYNKDLLPN----PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNA-- 200 (602)
T ss_dssp CEEEEETTTCSS----CCSBTTHHHHHHHHHHTTTCEEECCCSSSHHHHHHHHHHTTCEEEEEETTEEEEEEEESSSH--
T ss_pred EEEEEEhHHhcC----CCCCHHHHHHHHHHHhhcCCcccccCCcchhhHHHHHHhcCCceeeccCCcccccccccCCH--
Confidence 478999999986 89999999863 2345443321 111122223344443211 0 1111
Q ss_pred hhchHHHHHHHHHHHhcc--cccc-cchhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEE-ecC-----CCceeeeee
Q 024049 63 VAGGKISVQQNLALLANQ--ARLF-DSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV-VPK-----SGASLWADL 133 (273)
Q Consensus 63 ~~~~~~~~~~~L~~l~~~--v~~~-~~~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~-~P~-----eG~~~~~d~ 133 (273)
...++.+++.++... +... ..+...+.|.+|++.+.+.++.........+.+++++ +|. .+..++.++
T Consensus 201 ---~~~~al~~l~~l~~~g~~~~~~~~~~~~~~f~~Gk~Am~~~g~w~~~~~~~~~~~~gv~~lP~~~g~~~~~~~g~~~ 277 (602)
T 4b3n_A 201 ---GAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLS 277 (602)
T ss_dssp ---HHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTCEEEEEECGGGHHHHHHHTCCEEEECCCEETTEECCCEEEEEE
T ss_pred ---HHHHHHHHHHHHHHcCCCCcccchhhHHHHhhcCceEEEEecHHHHHHHHhcCCCeEEEEcCCCCCCCCcceEeeEE
Confidence 244666777776543 1111 1245678899999999998888777777778888875 563 235677889
Q ss_pred EEEecCCCCcccccCCCCCCChHHHHHHHH-HHhcHHHhchhhh
Q 024049 134 WAIPAASRLETKQIGGRVRGPSPLIHQWIE-FCLQTARALPFKQ 176 (273)
Q Consensus 134 ~~I~k~a~~~~~~~~~~~~~~~~~A~~FIn-fllspe~q~~~~~ 176 (273)
++|+++++|++ +|.+||+ |+.++|.|..+..
T Consensus 278 ~~I~~~Skn~e------------aA~~Fl~~~l~s~e~~~~~~~ 309 (602)
T 4b3n_A 278 AGIDAASPNKE------------LAKEFLENYLLTDEGLEAVNK 309 (602)
T ss_dssp EEEBTTCTTHH------------HHHHHHHHTTSSHHHHHHHHH
T ss_pred EEEECCCCCHH------------HHHHHHHHHhcCHHHHHHHHH
Confidence 99999999998 9999996 7889999998875
No 67
>3thi_A Protein (thiaminase I); thiamin degradation, transferase; 2.00A {Bacillus subtilis} SCOP: c.94.1.1 PDB: 2thi_A 4thi_A
Probab=99.23 E-value=7.3e-11 Score=107.79 Aligned_cols=153 Identities=11% Similarity=0.184 Sum_probs=96.7
Q ss_pred EEEEeCccccccCCCCCCChHHhcCc--ccCCc-------EEee-C-ChH----HHHHHHHHHhCCCC-C--------CC
Q 024049 2 VIAYKKSKFRKHNLAPIEDWKDLWRP--ELAGR-------ISMV-N-SPR----EVIGSVLKYMGASY-N--------SN 57 (273)
Q Consensus 2 gi~YN~~~v~~~g~~~p~SW~dL~dp--~~kGk-------i~~~-d-~~~----~~~~~al~~~G~~~-~--------~~ 57 (273)
+|.||++++.. ++|+||++|++- +++.+ .++. + ... ..+...+...|+.. + ..
T Consensus 108 ~l~YNkd~~g~---~~P~Twdel~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~ 184 (371)
T 3thi_A 108 LLFYRKGDLKI---GQVDNIYELYKKIGTSHSEQIPPPQNKGLLINMAGGTTKASMYLEALIDVTGQYTEYDLLPPLDPL 184 (371)
T ss_dssp EEEEETTCHHH---HTCCBHHHHHHHHCCCCCCCSSCCEEEEEEECCCSHHHHHHHHHHHHHHHHTCCCCCSSCCCSSSC
T ss_pred EEEEeCccccC---CCCCcHHHHHHHHHhhcccCCCCCCcCceeeecCCCcchHHHHHHHHHhcCCcccccccccccccC
Confidence 68999998763 489999999973 43321 1221 1 111 11112223334332 1 12
Q ss_pred ChhhhhhchHHHHHHHHHHHhcc-cccc--cch---hHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEE-ecC----CC
Q 024049 58 NIDLQVAGGKISVQQNLALLANQ-ARLF--DST---HYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV-VPK----SG 126 (273)
Q Consensus 58 ~~~~~~~~~~~~~~~~L~~l~~~-v~~~--~~~---~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~-~P~----eG 126 (273)
+++ ..++.+.+.++... ...+ ... ...+.|.+|++.|.+.|+...........+++++ +|. ++
T Consensus 185 ~~~------~~~al~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~G~~am~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~ 258 (371)
T 3thi_A 185 NDK------VIRGLRLLINMAGEKPSQYVPEDGDAYVRASWFAQGSGRAFIGYSESMMRMGDYAEQVRFKPISSSAGQDI 258 (371)
T ss_dssp CHH------HHHHHHHHHHHHCHHHHHCCCTTCCTTHHHHHHHHTBEEEEEEETTHHHHHGGGGGTEEEECCBSCSSCCC
T ss_pred CHH------HHHHHHHHHHHhccccCcccccCCchhHHHHHHhCCeeeEEecchhhhhHhhhcccceEEEeCCCCCCCCC
Confidence 222 34556666665422 1134 111 2668899999999999887665554444477775 563 35
Q ss_pred ceeeeeeEEEecCCCCcccccCCCCCCChHHHHHHHHHHhcHHH-hchhh
Q 024049 127 ASLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTAR-ALPFK 175 (273)
Q Consensus 127 ~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInfllspe~-q~~~~ 175 (273)
...+.++++|+++++|++ +|.+||+||++||. |..+.
T Consensus 259 ~~~~~~~~~I~~~s~~~e------------~A~~fl~~l~s~e~~~~~~~ 296 (371)
T 3thi_A 259 PLFYSDVVSVNSKTAHPE------------LAKKLANVMASADTVEQALR 296 (371)
T ss_dssp CEEEEEEEEEETTCSCHH------------HHHHHHHHHHSHHHHHHHHS
T ss_pred ceeeeeEEEEcCCCCCHH------------HHHHHHHHHcCcHHHHHhhC
Confidence 678899999999999998 99999999999999 54443
No 68
>3cfz_A UPF0100 protein MJ1186; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.70A {Methanocaldococcus jannaschii}
Probab=99.18 E-value=1.6e-10 Score=103.31 Aligned_cols=142 Identities=18% Similarity=0.244 Sum_probs=90.9
Q ss_pred CEEEEeCccccccCCCCCCChHHhc-CcccCCcEEeeCChHHHHH----HHHHHhCCCCCCCChhhhhhchHHHHHHHHH
Q 024049 1 MVIAYKKSKFRKHNLAPIEDWKDLW-RPELAGRISMVNSPREVIG----SVLKYMGASYNSNNIDLQVAGGKISVQQNLA 75 (273)
Q Consensus 1 ~gi~YN~~~v~~~g~~~p~SW~dL~-dp~~kGki~~~d~~~~~~~----~al~~~G~~~~~~~~~~~~~~~~~~~~~~L~ 75 (273)
++|+||++.....++ +|++|.||+ +| ++||++.|+.....| .+|...|...+ +.. .++.+.
T Consensus 87 lvi~~~~~~~~~~~i-~~~~w~dll~~p--~~~I~~~dp~~~~~G~~~~~~l~~~~~~~~--~~~---------~~~~l~ 152 (292)
T 3cfz_A 87 IVLAYTDKSKYKDEI-NSTNWYKILQRP--DVKIGFSNPNDDPCGYRTQMVLQLAELYYK--DPT---------IYDNLV 152 (292)
T ss_dssp EEEEECTTSTTTTTC-CTTTHHHHTTST--TCCEEEECTTTCHHHHHHHHHHHHHHHHHT--CTT---------HHHHHT
T ss_pred EEEEEcCCCccccCC-CcccHHHHhcCC--CcEEEeCCCCCCCCcHHHHHHHHHHHHhcc--CCc---------HHHHHh
Confidence 478999986543222 578999966 56 579999986544444 22333332111 111 223332
Q ss_pred HH---------------------hc---cccccc-chhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEE-EecCCCc--
Q 024049 76 LL---------------------AN---QARLFD-STHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAV-VVPKSGA-- 127 (273)
Q Consensus 76 ~l---------------------~~---~v~~~~-~~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~-~~P~eG~-- 127 (273)
.. ++ ++.... ..+..+.+.+|++++++.|.+++.. . .+.+ .+|+++.
T Consensus 153 ~~~~~l~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ge~d~gi~~~s~a~~---~--~~~~~~~P~~~~~~ 227 (292)
T 3cfz_A 153 LKHSNIKVEENNGTYLILVPKELDVDTNKLFVRSKETDLLAPLEAGAFDYLFIYKSVANQ---H--HLKYIELPKEINLG 227 (292)
T ss_dssp GGGBSCEEEEETTEEEEEECSSCCBCTTTEEEESSGGGGHHHHHTTSSSEEEEEHHHHHH---T--TCEEECCCTTTSSC
T ss_pred cccccccccccCCcccccccccccccccceeecccHHHHHHHHHCCCCCEEEEEehhhhh---C--CCCEEECChhhccc
Confidence 21 00 111222 3467889999999999999888764 2 2444 3677642
Q ss_pred ------------------------eeeeeeEEEecCCCCcccccCCCCCCChHHHHHHHHHHhcHHHhchhh
Q 024049 128 ------------------------SLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFK 175 (273)
Q Consensus 128 ------------------------~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~ 175 (273)
..+.++++|+++++|++ +|++||+||+ |+|..+.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~k~a~~~~------------~A~~Fi~fl~--e~q~i~~ 285 (292)
T 3cfz_A 228 YYEYADTYKKVALKIIAKNKTINAKPIVYGMTVPTNAPHKK------------EAIEFVKFVL--GHPEVLE 285 (292)
T ss_dssp CGGGHHHHTTEEEEEGGGTEEEECCCCEEEEECCTTCTTHH------------HHHHHHHHHH--HCTHHHH
T ss_pred CccccchhhceeeeeccccccccCCceeEEEEeecCCCCHH------------HHHHHHHHHH--HHHHHHH
Confidence 22578999999999988 8999999999 8888775
No 69
>1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC transporter; 1.20A {Azotobacter vinelandii} SCOP: c.94.1.1
Probab=99.18 E-value=8.4e-11 Score=98.87 Aligned_cols=143 Identities=13% Similarity=0.034 Sum_probs=95.3
Q ss_pred EEEEeCccccccCCCCCCChHHhcCcccCCcEEeeCChHHHHH----HHHHHhCCCCCCCChhhhhhchHHHHHHHHHHH
Q 024049 2 VIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIG----SVLKYMGASYNSNNIDLQVAGGKISVQQNLALL 77 (273)
Q Consensus 2 gi~YN~~~v~~~g~~~p~SW~dL~dp~~kGki~~~d~~~~~~~----~al~~~G~~~~~~~~~~~~~~~~~~~~~~L~~l 77 (273)
+++||++.. .+.||+||.++++ |+|.+.+......+ .++...|. +.+ + .+
T Consensus 83 vlv~~~~~~------~~~~~~dL~~~~~-~~i~~~~~~~~~~~~~~~~~l~~~g~--------------~~~----~-~~ 136 (231)
T 1atg_A 83 VLWSAKPGL------VDNQGKVLAGNGW-RHIAISNPQIAPYGLAGTQVLTHLGL--------------LDK----L-TA 136 (231)
T ss_dssp EEEESSTTT------SCTTSGGGGSSSC-SCEEEECTTTCHHHHHHHHHHHHTTC--------------HHH----H-HH
T ss_pred EEEEcCCCC------CCcchhhhccCCC-CEEEecCCCCCchhHHHHHHHHHCCC--------------ccc----c-cc
Confidence 677887652 3458999999876 78999874322222 22332232 000 0 14
Q ss_pred hcccccccc-hhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEEecCCCceeeeeeEEEecCCCCcccccCCCCCCChH
Q 024049 78 ANQARLFDS-THYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPSP 156 (273)
Q Consensus 78 ~~~v~~~~~-~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~ 156 (273)
++++....+ ....+++.+|++.+|+.|.+.+......+..+.+.+|.+|...+...++|++++++++
T Consensus 137 ~~~~~~~~~~~~~~~~v~~G~~~i~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~i~~~~~~~~------------ 204 (231)
T 1atg_A 137 QERIVEANSVGQAHSQTASGAADLGFVALAQIIQAAAKIPGSHWFPPANYYEPIVQQAVITKSTAEKA------------ 204 (231)
T ss_dssp TTCEEEESSHHHHHHHHHTTSSSEEEEEGGGTCCTTSCCSSEEECCCGGGSCCCEEEEEEBTTCSCHH------------
T ss_pred cceEEecCCHHHHHHHHHcCCCCEEEEEHHHhhhccccccCeEEEeCcccCccceEeEEEecCCCChH------------
Confidence 444433333 4678999999999999998765422111234667789887666667899999999877
Q ss_pred HHHHHHHHHhcHHHhchhhhhhcCCCCC
Q 024049 157 LIHQWIEFCLQTARALPFKQEVIPGASP 184 (273)
Q Consensus 157 ~A~~FInfllspe~q~~~~~~~~~~~~p 184 (273)
+|++||+|+++++.|..+.+ .+|.+|
T Consensus 205 ~a~~fi~~l~s~~~q~~~~~--~g~~~~ 230 (231)
T 1atg_A 205 NAEQFMSWMKGPKAVAIIKA--AGYVLP 230 (231)
T ss_dssp HHHHHHHHTTSHHHHHHHHH--TTCBCC
T ss_pred HHHHHHHHHcCHHHHHHHHH--hCCCCC
Confidence 99999999999999988763 365443
No 70
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=99.17 E-value=4.4e-10 Score=113.04 Aligned_cols=158 Identities=18% Similarity=0.181 Sum_probs=104.1
Q ss_pred CEEEEeCccccccCCCCCCChHHhcCc--cc--CCcEEeeC---ChHHHHHHHHHHhCCCCC-CCC-------hhhhhhc
Q 024049 1 MVIAYKKSKFRKHNLAPIEDWKDLWRP--EL--AGRISMVN---SPREVIGSVLKYMGASYN-SNN-------IDLQVAG 65 (273)
Q Consensus 1 ~gi~YN~~~v~~~g~~~p~SW~dL~dp--~~--kGki~~~d---~~~~~~~~al~~~G~~~~-~~~-------~~~~~~~ 65 (273)
.++.||+|+|++ +|+||++|++- ++ +|+..+.- .+.... ..+...|+... ..+ ..+. ..
T Consensus 114 ~~l~YNkdlf~e----~P~TWdEl~~~akklk~~g~~~~~~~~~~~~~~~-~~~~~~gg~~~~~~~g~~~~~~~~~~-s~ 187 (715)
T 4h1g_A 114 LSLIYNKDLLPN----PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTW-PLIAADGGYAFKYENGKYDIKDVGVD-NA 187 (715)
T ss_dssp CEEEEETTTCSS----CCSBGGGHHHHHHHHHTTTCEEECCCCSSHHHHH-HHHHHTTCEEEEECSSSEEEEEEESS-SH
T ss_pred EEEEEEhHHhcC----CCCCHHHHHHHHHHHHhcCCCceeccCCchHHHH-HHHHhhCCceecccCCcccccccccC-CH
Confidence 478999999986 89999999863 22 45544432 222222 23344454211 000 0000 01
Q ss_pred hHHHHHHHHHHHhcc--cccc-cchhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEE-ecC-----CCceeeeeeEEE
Q 024049 66 GKISVQQNLALLANQ--ARLF-DSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV-VPK-----SGASLWADLWAI 136 (273)
Q Consensus 66 ~~~~~~~~L~~l~~~--v~~~-~~~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~-~P~-----eG~~~~~d~~~I 136 (273)
...++.+++.++... +... ..+...+.|.+|++.|.+.|+.........+.+++++ +|. .+...+..+++|
T Consensus 188 ~~~~al~~l~~l~~~g~~~~~~~~~~~~~~F~~Gk~Am~~~g~w~~~~~~~~~~~~gva~lP~~~g~~~~~~~g~~~~~I 267 (715)
T 4h1g_A 188 GAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGI 267 (715)
T ss_dssp HHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTCEEEEEECGGGHHHHHHSSCCEEEECCCEETTEECCCEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCCcchhhhhHHHHhhcCceEEEEecHHHHHHHHhcCCCeEEEEcCCCCCCCCcceeeeEEEEE
Confidence 245667777777543 1111 1245678899999999998887777777777888875 563 235677889999
Q ss_pred ecCCCCcccccCCCCCCChHHHHHHHH-HHhcHHHhchhhh
Q 024049 137 PAASRLETKQIGGRVRGPSPLIHQWIE-FCLQTARALPFKQ 176 (273)
Q Consensus 137 ~k~a~~~~~~~~~~~~~~~~~A~~FIn-fllspe~q~~~~~ 176 (273)
+++++|++ +|.+||+ |+.+||.|..+..
T Consensus 268 ~~~Skn~e------------aA~~Fl~~~l~s~e~q~~~~~ 296 (715)
T 4h1g_A 268 NAASPNKE------------LAKEFLENYLLTDEGLEAVNK 296 (715)
T ss_dssp BTTCSCHH------------HHHHHHHHTTSSHHHHHHHHH
T ss_pred ECCCCcHH------------HHHHHHHHHhCCHHHHHHHHH
Confidence 99999998 9999996 7889999998875
No 71
>4exk_A Maltose-binding periplasmic protein, uncharacteri protein chimera; MCSG, pcsep, MBP-fused target, structural genomics; HET: MTT; 1.28A {Escherichia coli} PDB: 3g7v_A* 3g7w_A* 3sev_A* 3ser_A* 3sew_A* 3set_A* 3ses_A* 3seu_A* 3sex_A* 3sey_A* 3q27_A* 3q28_A* 3q26_A* 3q25_A* 3q29_A* 1nmu_A* 2ok2_A* 3pgf_A* 1t0k_A* 3rum_A* ...
Probab=99.17 E-value=5.6e-10 Score=107.37 Aligned_cols=154 Identities=16% Similarity=0.148 Sum_probs=103.5
Q ss_pred CEEEEeCccccccCCCCCCChHHhcCc--c--cCCcEEee--CChHHHHHHHHHHhCCCCC-------------CCChhh
Q 024049 1 MVIAYKKSKFRKHNLAPIEDWKDLWRP--E--LAGRISMV--NSPREVIGSVLKYMGASYN-------------SNNIDL 61 (273)
Q Consensus 1 ~gi~YN~~~v~~~g~~~p~SW~dL~dp--~--~kGki~~~--d~~~~~~~~al~~~G~~~~-------------~~~~~~ 61 (273)
.+|.||+++|++ +|+||++|.+- + -+|+..+. ..........+...|.... ..++
T Consensus 117 ~~l~YNkdlf~e----~P~Twdel~~~akklk~~g~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~g~~d~~~~~~~~~-- 190 (487)
T 4exk_A 117 LSLIYNKDLLPN----PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYAAGKYDIKDVGVDNA-- 190 (487)
T ss_dssp CEEEEETTTCSS----CCSBSTTHHHHHHHHHTTTCEEECCCTTSHHHHHHHHHHTTCEEEEEETTEEEEEEEETTSH--
T ss_pred EEEEEEeecccc----CCchHHHHHHHHHHHHhcCCCccccCCCcccchhHHHHhhccceeeccCCCccccccccCCH--
Confidence 479999999986 89999999863 2 23443332 1112222223344454210 0112
Q ss_pred hhhchHHHHHHHHHHHhccc--cc-ccchhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEE-ecC-C----Cceeeee
Q 024049 62 QVAGGKISVQQNLALLANQA--RL-FDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV-VPK-S----GASLWAD 132 (273)
Q Consensus 62 ~~~~~~~~~~~~L~~l~~~v--~~-~~~~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~-~P~-e----G~~~~~d 132 (273)
...++.+++.++...- .. .......+.|.+|++.+.+.++.........+.+++++ +|. + +...+..
T Consensus 191 ----~~~~al~~l~~l~~~g~~~~~~~~~~~~~~F~~Gk~Am~~~g~w~~~~~~~~~~~~gv~plP~~~g~~~~~~~g~~ 266 (487)
T 4exk_A 191 ----GAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSAVNYGVTVLPTFKGQPSKPFVGVL 266 (487)
T ss_dssp ----HHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTCEEEEEECGGGHHHHHHSSCCEEEECCCBBTTBCCCCEEEEE
T ss_pred ----HHHHHHHHHHHHHHcCCCCcccchhhHHHhhhcCCEEEEEeCHHHHHHHHhcCCCeeEEEeccCCCCCCcceecce
Confidence 2456677777776431 11 12245678899999999999888777777778888875 453 1 2456788
Q ss_pred eEEEecCCCCcccccCCCCCCChHHHHHHHH-HHhcHHHhchhhh
Q 024049 133 LWAIPAASRLETKQIGGRVRGPSPLIHQWIE-FCLQTARALPFKQ 176 (273)
Q Consensus 133 ~~~I~k~a~~~~~~~~~~~~~~~~~A~~FIn-fllspe~q~~~~~ 176 (273)
+++|+++++|++ +|.+||. |+.++|.|..+..
T Consensus 267 ~~~I~~~Skn~e------------aA~~Fl~~~l~s~e~q~~~~~ 299 (487)
T 4exk_A 267 SAGINAASPNKE------------LAKEFLENYLLTDEGLEAVNK 299 (487)
T ss_dssp EEEEBTTCTTHH------------HHHHHHHHTTSSHHHHHHHHH
T ss_pred EEEEECCCCCHH------------HHHHHHHHHhCCHHHHHHHHH
Confidence 999999999998 9999996 7889999999875
No 72
>2uvj_A TOGB, ABC type periplasmic sugar-binding protein; periplasmic binding protein, pectin degradation, trigalacturonic acid; HET: ADA; 1.8A {Yersinia enterocolitica} PDB: 2uvi_A* 2uvh_A* 2uvg_A 3u1o_A
Probab=99.16 E-value=9.9e-10 Score=101.78 Aligned_cols=160 Identities=12% Similarity=0.165 Sum_probs=97.1
Q ss_pred EEEEeCccccccCCCCCCChHHhcCc--ccC-----CcEEeeCChHHHH---HHHH-HHhCCCCCCCCh-hhhh-hchHH
Q 024049 2 VIAYKKSKFRKHNLAPIEDWKDLWRP--ELA-----GRISMVNSPREVI---GSVL-KYMGASYNSNNI-DLQV-AGGKI 68 (273)
Q Consensus 2 gi~YN~~~v~~~g~~~p~SW~dL~dp--~~k-----Gki~~~d~~~~~~---~~al-~~~G~~~~~~~~-~~~~-~~~~~ 68 (273)
++.||+++++++|+++|+||++|.+- +++ |...+.....+.. ...+ ...|.+..+.+. ...+ .....
T Consensus 122 ~l~YNkdl~~~aGl~~P~Twdel~~~a~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~ 201 (408)
T 2uvj_A 122 IFYFNDATWAKAGLEYPKTWDELLAAGKVFKEKLGDQYYPVVLEHQDTLALIRSYMTQKYNIPTIDEANKKFAYSPEQWV 201 (408)
T ss_dssp EEEEEHHHHHHHTCCCCSSHHHHHHHHHHHHHHTCTTCBSCCCCHHHHHHHHHHHHHHHHCCCSEETTTTEECSCHHHHH
T ss_pred EEEEcHHHHHHcCCCCCCCHHHHHHHHHHHHhhcCCCeeeeeccccchHHHHHHHHHHhcCCCcccCCCCeeccChHHHH
Confidence 78999999999999999999999973 332 3344433222221 1112 245765321111 0000 01245
Q ss_pred HHHHHHHHHhcccccccc---------h--hHHHHhhcCcEEEEEeccccHHHHHh---cCCCcEEE-ecC-CCc-----
Q 024049 69 SVQQNLALLANQARLFDS---------T--HYLKAFGIGDVWVAVGWSSDVLPAVK---RMSNVAVV-VPK-SGA----- 127 (273)
Q Consensus 69 ~~~~~L~~l~~~v~~~~~---------~--~~~~~~~~Gev~va~~~s~~~~~~~~---~~~~v~~~-~P~-eG~----- 127 (273)
++.+++.++.+. ..+.. . .....|.+|++.+.+.|+........ .+.+++++ +|. +|.
T Consensus 202 ~al~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~ 280 (408)
T 2uvj_A 202 EFFTMYKTMVDN-HVMPSTKYYASFGKSNMYEMKPWINGEWAGTYMWNSTITKYSDNLTKPAKLVLGPYPMLPGAKDAGL 280 (408)
T ss_dssp HHHHHHHHHHHT-TSSCCHHHHHTTCSSCGGGSHHHHTTSBCEEEEEGGGTHHHHTTSCTTCCEEECCCCCCTTCSCCCC
T ss_pred HHHHHHHHHHHC-CCCCChHHhhhccccccccCCceeccceeEEEeecchHHHhhccccCCCceEEEeCCcCCCCCCCce
Confidence 667777777542 11111 1 13567999999999888776554433 23467775 675 221
Q ss_pred e-eeeeeEEEecCCCCcccccCCCCCCChHHHHHHHHHHhcHHHhchh
Q 024049 128 S-LWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPF 174 (273)
Q Consensus 128 ~-~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~ 174 (273)
. ....+++|+++++|++ +|.+||+||++++.+..+
T Consensus 281 ~~~~~~~~~i~~~s~~~e------------~A~~fl~~l~s~~~~~~~ 316 (408)
T 2uvj_A 281 FFKPAQMLSIGKSTKHPQ------------ESAMLINFLLNSKEGVEA 316 (408)
T ss_dssp CEEEEEEEEEBTTCSCHH------------HHHHHHHHHHTSHHHHHH
T ss_pred eeccceEEEEECCCCCHH------------HHHHHHHHHcCCHHHHHH
Confidence 1 1245799999999998 999999999986554443
No 73
>2z8f_A Galacto-N-biose/lacto-N-biose I transporter subst binding protein; ABC transporter, mucin core-1, human MILK oligosacchalide; HET: BGC GAL NAG MES; 1.65A {Bifidobacterium longum} PDB: 2z8e_A* 2z8d_A*
Probab=99.15 E-value=1.4e-10 Score=107.94 Aligned_cols=159 Identities=12% Similarity=0.095 Sum_probs=100.4
Q ss_pred EEEEeCccccccCCC-CCCChHHhcCc--ccC--CcEEe-eCCh--HHHHHHHHHHhCCCCCCCCh---hhhh-hchHHH
Q 024049 2 VIAYKKSKFRKHNLA-PIEDWKDLWRP--ELA--GRISM-VNSP--REVIGSVLKYMGASYNSNNI---DLQV-AGGKIS 69 (273)
Q Consensus 2 gi~YN~~~v~~~g~~-~p~SW~dL~dp--~~k--Gki~~-~d~~--~~~~~~al~~~G~~~~~~~~---~~~~-~~~~~~ 69 (273)
++.||+++|+++|++ +|+||++|.+. +++ |...+ .... ...+...+...|. ....+. ...+ .....+
T Consensus 133 ~l~Ynkdl~~~aGl~~~P~Twdel~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~G~-~~~~d~~~~~~~~~~~~~~~ 211 (412)
T 2z8f_A 133 VYFYNKAEFEKLGITEIPQTADEFIAAAKTAAAAGKYIMSYQPDEAGNMISGLAGASGG-WYKVKGDSWVVNTETDGSKA 211 (412)
T ss_dssp EEEEEHHHHHHTTCCSCCCBHHHHHHHHHHHHHTTCBSCBCCGGGTTTHHHHHHHTTCC-SEEEETTEEEECCCCHHHHH
T ss_pred EEEEeHHHHHHcCCCCCCCCHHHHHHHHHHHHhcCCceeecCCcccchHHHHHHHhcCc-eEecCCCeeeecCCCHHHHH
Confidence 789999999999998 99999999974 343 43111 1111 1223333445564 211000 0000 012456
Q ss_pred HHHHHHHHhcc--cccc--cchhHHHHhhcCcEEEEEeccccHHHHHhc-----CCCcEEE-ecC--CCc----eeeeee
Q 024049 70 VQQNLALLANQ--ARLF--DSTHYLKAFGIGDVWVAVGWSSDVLPAVKR-----MSNVAVV-VPK--SGA----SLWADL 133 (273)
Q Consensus 70 ~~~~L~~l~~~--v~~~--~~~~~~~~~~~Gev~va~~~s~~~~~~~~~-----~~~v~~~-~P~--eG~----~~~~d~ 133 (273)
+.+++.++... +... ++++..+.|.+|++.|.+.++.....+... +.+++++ +|. +|. .....+
T Consensus 212 al~~~~~l~~~g~~~~~~~~~~~~~~~f~~G~~am~~~g~w~~~~~~~~~~~~~~~~~~~~~~P~~~~g~~~~~~~~~~~ 291 (412)
T 2z8f_A 212 TADFYQQLLDAKAATTNPRWDPSFDASIKDGSLIGTVAAAWEAPLFMTSSGGTGSGEWQVAQLGDWFGNAGKTGPDGGSA 291 (412)
T ss_dssp HHHHHHHHHHTTCSBCCCTTSHHHHHHHHTTCBCEEEEEGGGHHHHHHHHTTTTTTTEEEEECCBCSSCTTCBCBCCCEE
T ss_pred HHHHHHHHHHcCCcCccccCCHHHHHHHhCCCEEEEecccchhhHHhhhCCcCcccceEEEcCCCCCCCCCccccCCcce
Confidence 77777777642 2111 234567889999999988766554444332 3478875 785 242 445678
Q ss_pred EEEecCCCCcccccCCCCCCChHHHHHHHHHHhcH-HHhch
Q 024049 134 WAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQT-ARALP 173 (273)
Q Consensus 134 ~~I~k~a~~~~~~~~~~~~~~~~~A~~FInfllsp-e~q~~ 173 (273)
++|+++++|++ +|.+||+||+++ +.|..
T Consensus 292 ~~i~~~s~~~e------------~A~~fl~~l~s~~e~~~~ 320 (412)
T 2z8f_A 292 VAVLKNSKHPK------------EAMEFLDWFNTQVPDLVS 320 (412)
T ss_dssp EEEBTTCSCHH------------HHHHHHHHHTTCHHHHHH
T ss_pred EEEeCCCCCHH------------HHHHHHHHHccCHHHHHh
Confidence 99999999998 999999999997 77765
No 74
>4aq4_A SN-glycerol-3-phosphate-binding periplasmic prote; diester-binding protein; HET: G3P; 1.80A {Escherichia coli}
Probab=99.14 E-value=1.6e-09 Score=99.79 Aligned_cols=235 Identities=13% Similarity=0.098 Sum_probs=126.2
Q ss_pred EEEEeCccccccCCC---CCCChHHhcCc--cc--CCc-EEee-CChH-HHHHHHHHHhCCCC---------C-----CC
Q 024049 2 VIAYKKSKFRKHNLA---PIEDWKDLWRP--EL--AGR-ISMV-NSPR-EVIGSVLKYMGASY---------N-----SN 57 (273)
Q Consensus 2 gi~YN~~~v~~~g~~---~p~SW~dL~dp--~~--kGk-i~~~-d~~~-~~~~~al~~~G~~~---------~-----~~ 57 (273)
++.||+++|+++|++ +|+||++|.+- ++ +|. .... .... ..+.......|... . -.
T Consensus 128 ~l~Ynkdlf~~aGl~~~~~p~Twde~~~~a~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (419)
T 4aq4_A 128 VLYYNKDAFKKAGLDPEQPPKTWQDLADYAAKLKASGMKCGYASGWQGWIQLENFSAWNGLPFASKNNGFDGTDAVLEFN 207 (419)
T ss_dssp EEEEEHHHHHHTTCCTTCCCSBHHHHHHHHHHHHHTTCSEEEEESSHHHHHTHHHHHHTTCCSBHHHHTTTCTTCCBCCC
T ss_pred EEEEEhHHHHHcCCCCCCCCCCHHHHHHHHHHHhccccCCCcccccCcccchhhhhhhccccccccccccccCCCeeeec
Confidence 789999999999984 58999999873 22 232 2221 1111 11111111222110 1 11
Q ss_pred ChhhhhhchHHHHHHHHHHHhcc--cc-cccchhHHHHhhcCcEEEEEeccccHHHHHh-cCCCcEEE-ecC--C-----
Q 024049 58 NIDLQVAGGKISVQQNLALLANQ--AR-LFDSTHYLKAFGIGDVWVAVGWSSDVLPAVK-RMSNVAVV-VPK--S----- 125 (273)
Q Consensus 58 ~~~~~~~~~~~~~~~~L~~l~~~--v~-~~~~~~~~~~~~~Gev~va~~~s~~~~~~~~-~~~~v~~~-~P~--e----- 125 (273)
++ ...++.+++.++... +. ....++..+.|.+|++.|.+.++........ .+.++++. +|. .
T Consensus 208 ~~------~~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~G~~am~~~g~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~ 281 (419)
T 4aq4_A 208 KP------EQVKHIAMLEEMNKKGDFSYVGRKDESTEKFYNGDCAMTTASSGSLANIREYAKFNYGVGMMPYDADAKDAP 281 (419)
T ss_dssp SH------HHHHHHHHHHHHHHHTSBCCCCSSSHHHHHHHTTSEEEEEEEGGGHHHHHHHCCSCEEEEECCBCTTCTTCC
T ss_pred cH------HHHHHHHHHHHHHhcCCCCcccchhhHHHhhhcCceEEEEeChHHHHHHHhhCCCceEEEeccCCCCCCCCC
Confidence 22 244566777776542 11 1123467789999999998887776655443 34466653 452 1
Q ss_pred -CceeeeeeEEEecC--CCCcccccCCCCCCChHHHHHHHHHHhcHHHhchhhhhhcCCCCCChhhhhcc--CCChHHhc
Q 024049 126 -GASLWADLWAIPAA--SRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALETTLV--KLPEELLK 200 (273)
Q Consensus 126 -G~~~~~d~~~I~k~--a~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~~~~~~~~p~~~~~a~~--~l~~e~~~ 200 (273)
++.+...+++|+++ ++|++ +|.+||+||++||.|..+.. ..++.+++ ..+.. ...+.+.+
T Consensus 282 ~~~~~~g~~~~i~~~~~~~~~~------------aA~~fl~~l~s~e~~~~~~~-~~g~~P~~--~~~~~~~~~~~~~~~ 346 (419)
T 4aq4_A 282 QNAIIGGASLWVMQGKDKETYT------------GVAKFLDFLAKPENAAEWHQ-KTGYLPIT--KAAYDLTREQGFYEK 346 (419)
T ss_dssp CCCCCEEEEEEEESSCCHHHHH------------HHHHHHHHHTSHHHHHHHHH-HHCCBCCB--HHHHHHHHHTTHHHH
T ss_pred cceeecCceEEEEecchhhhHH------------HHHHHHHHhCCHHHHHHHHH-hcCCCCCc--HHHhhchhhhhHHhh
Confidence 12334456777754 34665 89999999999999999985 34554333 22211 11111111
Q ss_pred CCCCCCCCcccCCCCHHHHhhceecc-------CCCHHHHHHHHHHHHHhhC--CC-cchHHHHHHHHHHHHHHH
Q 024049 201 GKPSQDTNLIVGVPPAEILARCEFLE-------PLSEATLSDYEWLVADLQK--PA-PVLMKRVQHYLSSLIQSF 265 (273)
Q Consensus 201 ~~~~~~~~l~~~~p~~~~l~~~~~~~-------~~~~~~~~~~~~~W~~ik~--~~-~~~~~~~~~~~~~~~~~~ 265 (273)
+ |.+ ....+.+....... +..++....+.+..+++-. .+ .+.++++|....++++++
T Consensus 347 ~-----p~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~e~al~~~~~~~~~~L~~y 413 (419)
T 4aq4_A 347 N-----PGA---DTATRQMLNKPPLPFTKGLRLGNMPQIRVIVDEELESVWTGKKTPQQALDTAVERGNQLLRRF 413 (419)
T ss_dssp S-----GGG---GHHHHHHTSSCCCTTCSCCCCTTHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred C-----hhH---HHHHHHHHhCCCcCcccccccccHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 1 100 00011222221111 1113445566666666542 23 356788888888888876
No 75
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=99.14 E-value=1.9e-10 Score=116.97 Aligned_cols=158 Identities=18% Similarity=0.221 Sum_probs=100.3
Q ss_pred CEEEEeCccccccCCCCCCChHHhcC--cccC--CcEEee-C--ChHHHHHHHHHHhCCCC-CCCC-------hhhhhhc
Q 024049 1 MVIAYKKSKFRKHNLAPIEDWKDLWR--PELA--GRISMV-N--SPREVIGSVLKYMGASY-NSNN-------IDLQVAG 65 (273)
Q Consensus 1 ~gi~YN~~~v~~~g~~~p~SW~dL~d--p~~k--Gki~~~-d--~~~~~~~~al~~~G~~~-~~~~-------~~~~~~~ 65 (273)
.++.||++++++ +|+||++|++ ++++ |+..+. + ++...+ ..+...|... +..+ ..+. ..
T Consensus 117 ~~l~YNkdlf~~----~P~TWdEl~~~a~klk~~g~~~~~~~~~~~~~~~-~~~~~~Gg~~~~~~~g~~~~~~~~~~-~~ 190 (805)
T 2nvu_B 117 LSLIYNKDLLPN----PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTW-PLIAADGGYAFKYENGKYDIKDVGVD-NA 190 (805)
T ss_dssp CEEEECTTTCSS----CCSBSTTHHHHHHHHHTTTCEEECCCCSSHHHHH-HHHHHTTCEEEEECSSSEEEEEEETS-SH
T ss_pred eEEEEEhHhhcC----CCcCHHHHHHHHHHHHhcCCCceEeecCchHHHH-HHHHhcCCceeeccCCcccccccccC-CH
Confidence 478999999985 8999999975 4554 554332 1 122122 2334455421 1000 0000 01
Q ss_pred hHHHHHHHHHHHhcccc---cccchhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEE-EecC-CC----ceeeeeeEEE
Q 024049 66 GKISVQQNLALLANQAR---LFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAV-VVPK-SG----ASLWADLWAI 136 (273)
Q Consensus 66 ~~~~~~~~L~~l~~~v~---~~~~~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~-~~P~-eG----~~~~~d~~~I 136 (273)
...++.+++.++.+.-. ....++..+.|.+|++.|.+.++.........+.++++ .+|. +| ...+.++++|
T Consensus 191 ~~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~Gk~am~~~g~w~~~~~~~~~~~~g~~~~P~~~g~~~~~~~g~~~~~I 270 (805)
T 2nvu_B 191 GAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGI 270 (805)
T ss_dssp HHHHHHHHHHHHHHSSSCCTTCCHHHHHHHHTTTCEEEEEECTTTTTTTTTTTCCCCCBCCCBCSSSCCCCCEEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHCCCEEEEEeChhhHHHHhhcCCCeEEEECCCCCCCCccceecceEEEE
Confidence 24567777777764311 11224567899999999998776554333334556776 3675 33 3467889999
Q ss_pred ecCCCCcccccCCCCCCChHHHHHHH-HHHhcHHHhchhhh
Q 024049 137 PAASRLETKQIGGRVRGPSPLIHQWI-EFCLQTARALPFKQ 176 (273)
Q Consensus 137 ~k~a~~~~~~~~~~~~~~~~~A~~FI-nfllspe~q~~~~~ 176 (273)
+++++|++ +|++|| ||+++||.|..+..
T Consensus 271 ~~~sk~~e------------aA~~Fi~~fl~s~e~q~~~~~ 299 (805)
T 2nvu_B 271 NAASPNKE------------LAKEFLENYLLTDEGLEAVNK 299 (805)
T ss_dssp BSSCSTTH------------HHHHHHHTTTSSHHHHHHHHT
T ss_pred ECCCCCHH------------HHHHHHHHHhcCHHHHHHHHh
Confidence 99999998 999999 59999999998874
No 76
>2w7y_A FCSSBP, probable sugar ABC transporter, sugar-binding protein; solute-binding protein, blood group antigen, carbohydrate transport; HET: A2G GAL FUC; 2.35A {Streptococcus pneumoniae}
Probab=99.12 E-value=1.4e-10 Score=108.33 Aligned_cols=161 Identities=13% Similarity=0.096 Sum_probs=102.9
Q ss_pred EEEEeCccccccCCCCC---CChHHhcCc--ccC--C-cEEeeCChH--HHHHHHHH--HhCCCC---C----C-CChhh
Q 024049 2 VIAYKKSKFRKHNLAPI---EDWKDLWRP--ELA--G-RISMVNSPR--EVIGSVLK--YMGASY---N----S-NNIDL 61 (273)
Q Consensus 2 gi~YN~~~v~~~g~~~p---~SW~dL~dp--~~k--G-ki~~~d~~~--~~~~~al~--~~G~~~---~----~-~~~~~ 61 (273)
+|.||+++|+++|+++| +||++|++. +++ | .+++..... ..+...+. ..|.+. + . .++
T Consensus 160 ~l~YNkdl~~~aGl~~P~~~~Twdel~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~-- 237 (430)
T 2w7y_A 160 GLWYNKDIFAKAGAKTPDQWNTWDDFTQAMASIRKQDGVYAFGAGEPSIRLFNTVLGTTENGRKLLDKPLTKEGIESK-- 237 (430)
T ss_dssp CEEEEHHHHHHHTCCCGGGCCSHHHHHHHHHHHHTSSSCEEECCBTTHHHHHHHHHTTSHHHHHHTTSCCCTTTTTSH--
T ss_pred EEEEeHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCceEeeCCchHHHHHHHHHhhhcccceeccccccccccCCH--
Confidence 68999999999999877 899999974 443 3 455543211 12221221 123211 1 1 122
Q ss_pred hhhchHHHHHHHHHHHhcc--cccc--cchhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEE-ecCC-CceeeeeeEE
Q 024049 62 QVAGGKISVQQNLALLANQ--ARLF--DSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV-VPKS-GASLWADLWA 135 (273)
Q Consensus 62 ~~~~~~~~~~~~L~~l~~~--v~~~--~~~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~-~P~e-G~~~~~d~~~ 135 (273)
...++.+++.++... .... +.++..+.|.+|++.|.+.++.....+.. ..++++. +|.. +...+..+++
T Consensus 238 ----~~~~al~~~~~l~~~~~~~~~~~~~~~~~~~f~~G~~am~~~g~w~~~~~~~-~~~~~~~~~P~~~~~~~~~~~~~ 312 (430)
T 2w7y_A 238 ----EFADALKMVMKEIQANGSKNAGGDANAYSKDFQEGKSAVFFNGVWASGEMSK-NPSLAPGIYPAGVAISSSGGGIT 312 (430)
T ss_dssp ----HHHHHHHHHHHHHHHTCGGGCSBCHHHHHHHHHTTSEEEECCCGGGHHHHTT-STTEEEECBGGGEEEEECCCCEE
T ss_pred ----HHHHHHHHHHHHHHcCCCCccccChHHHHHHHhcCCeEEEEcChhhhhhhhc-CCCCceeccCCCcccccCCcceE
Confidence 245667777776542 1111 22456789999999998876655544433 3577774 6753 3344566899
Q ss_pred EecC--CCCcccccCCCCCCChHHHHHHHHHHhcHHHhchhhhhhcCCC
Q 024049 136 IPAA--SRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQEVIPGA 182 (273)
Q Consensus 136 I~k~--a~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~~~~~~~ 182 (273)
|+++ ++|++ +|.+||+||++||.|..+.. ..++.
T Consensus 313 i~~~~~s~~~e------------~A~~fl~~l~s~e~~~~~~~-~~g~~ 348 (430)
T 2w7y_A 313 ISSKMSEAKQK------------LALEFLKYMTSDDVQKVIFE-KVGAN 348 (430)
T ss_dssp EBSSSCHHHHH------------HHHHHHHHHTSHHHHHHHHH-TSCSC
T ss_pred EecCCCcccHH------------HHHHHHHHhcCHHHHHHHHH-HhCCC
Confidence 9997 67877 99999999999999998874 34543
No 77
>4g68_A ABC transporter; transport protein; HET: XYS; 1.80A {Caldanaerobius} PDB: 4g68_B*
Probab=99.10 E-value=3.6e-10 Score=106.72 Aligned_cols=157 Identities=14% Similarity=0.103 Sum_probs=100.2
Q ss_pred EEEEeCccccccCCCCCCChHHhcCc--cc--CCc--EEeeC--ChH--HHHHHHHHHhCCC----------CCCCChhh
Q 024049 2 VIAYKKSKFRKHNLAPIEDWKDLWRP--EL--AGR--ISMVN--SPR--EVIGSVLKYMGAS----------YNSNNIDL 61 (273)
Q Consensus 2 gi~YN~~~v~~~g~~~p~SW~dL~dp--~~--kGk--i~~~d--~~~--~~~~~al~~~G~~----------~~~~~~~~ 61 (273)
++.||+++|+++|+++|+||++|.+- ++ +|. +++.. ... ..+...+...|+. ..-.++.
T Consensus 180 ~l~Ynkdl~~~aG~~~P~Twde~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~d~~~g~~~~~~~~- 258 (456)
T 4g68_A 180 VLYINKELFDKYNVKVPTTFSELIDAIKTFKSKGVTPFALGEKDEWPGMWYYDMIALREGGVQLTRDALNGKASFDNQA- 258 (456)
T ss_dssp EEEEEHHHHHHHTCCCCCBHHHHHHHHHHHHHTTCCSBCCCCTTSHHHHHHHHHHHHHHHCHHHHHHHHTTSSCSCCHH-
T ss_pred eeeccHHHHhhcCCcccCCHHHHHHHHHHHHHCCCceEEeccCCCcchHHHHHHHHHHhCCchhcccccCCccccCCHH-
Confidence 78999999999999999999999873 33 232 22222 111 1122222222221 1112232
Q ss_pred hhhchHHHHHHHHHHHhcc--c----ccccchhHHHHhhcCcEEEEEeccccHHHHHhcC-----CCcEEE-ecC-C---
Q 024049 62 QVAGGKISVQQNLALLANQ--A----RLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRM-----SNVAVV-VPK-S--- 125 (273)
Q Consensus 62 ~~~~~~~~~~~~L~~l~~~--v----~~~~~~~~~~~~~~Gev~va~~~s~~~~~~~~~~-----~~v~~~-~P~-e--- 125 (273)
..++.+++.++... + .....++..+.|.+|++.|.+.++.......... .+++++ +|. +
T Consensus 259 -----~~~al~~~~~l~~~g~~~~~~~~~~~~~~~~~f~~Gk~am~~~g~w~~~~~~~~~~~~~~~~~~~~~~P~~~~~~ 333 (456)
T 4g68_A 259 -----FTDAAQKLQDMVNAGAFDSGFMGLTRDEATAEFNQGKAAMYFGGNFDAAAFVSDPSSLVKGKIEAVRFPTIEGGK 333 (456)
T ss_dssp -----HHHHHHHHHHHHHTTCBCTTGGGCCHHHHHHHHHTTCCSEEEEEGGGHHHHHTSTTCSCTTTEEEECCCBCTTCC
T ss_pred -----HHHHHHHHHHHHHcCCCCCccccCChHHHHhhhccCCEEEEEeCchHHHHHHhccccccCCceEEEecCccCCCC
Confidence 45677777776532 1 1122346778999999998887766655554332 256765 563 1
Q ss_pred Cc---e--eeeeeEEEecCCCCcccccCCCCCCChHHHHHHHHHHhcHHHhchhhh
Q 024049 126 GA---S--LWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQ 176 (273)
Q Consensus 126 G~---~--~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~ 176 (273)
|. . .+..+++|+++++|++ +|.+||+||+++|.|..+..
T Consensus 334 ~~~~~~~~g~~~~~~i~~~sk~~e------------~A~~fl~~l~s~e~~~~~~~ 377 (456)
T 4g68_A 334 GDPTEYIGGTVGALMVSANSKYKD------------EAVRAAKYLAKQLSDMDYLI 377 (456)
T ss_dssp SCTTCEEEEEEEEEEEBTTCSCHH------------HHHHHHHHHHHHHHHHHHHH
T ss_pred CCcceeecccceeeeecCCCcCHH------------HHHHHHHHHCCHHHHHHHHH
Confidence 11 1 2456799999999998 99999999999999998874
No 78
>3gzg_A Molybdate-binding periplasmic protein; permease; molybdate complex, mutant K127S, metal binding protein; 1.55A {Xanthomonas axonopodis PV} PDB: 2h5y_A
Probab=99.07 E-value=5.2e-10 Score=98.87 Aligned_cols=132 Identities=17% Similarity=0.162 Sum_probs=91.5
Q ss_pred CEEEEeCccccc-cCCCCCCC--hHHhcCcccCCcEEeeCChHHHHHHH----HHHhCCCCCCCChhhhhhchHHHHHHH
Q 024049 1 MVIAYKKSKFRK-HNLAPIED--WKDLWRPELAGRISMVNSPREVIGSV----LKYMGASYNSNNIDLQVAGGKISVQQN 73 (273)
Q Consensus 1 ~gi~YN~~~v~~-~g~~~p~S--W~dL~dp~~kGki~~~d~~~~~~~~a----l~~~G~~~~~~~~~~~~~~~~~~~~~~ 73 (273)
++|+||++.... . .+++ |.++.++ .+||++.|+.....|.+ |..+|.
T Consensus 105 lvl~~~~~~~~~~~---~i~~~dl~~l~~~--~~~iai~dP~~~p~G~~a~~~l~~~g~--------------------- 158 (253)
T 3gzg_A 105 LVLVAPASSKLRVD---PRAPGAIAKALGE--NGRLAVGQTASVPAGSYAAAALRKLGQ--------------------- 158 (253)
T ss_dssp EEEEEETTCCCCCC---TTSTTHHHHHTTT--TCCEEEECTTTSHHHHHHHHHHHHTTC---------------------
T ss_pred EEEEEECCCCcccC---CCCHHHHHHhhcC--CCEEEEeCCCCCchHHHHHHHHHHcCc---------------------
Confidence 368888876421 1 3555 6665443 47999998543334432 222221
Q ss_pred HHHHhccccccc-c-hhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEE--ecCCCceeeeeeEEEecCCCCcccccCC
Q 024049 74 LALLANQARLFD-S-THYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV--VPKSGASLWADLWAIPAASRLETKQIGG 149 (273)
Q Consensus 74 L~~l~~~v~~~~-~-~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~--~P~eG~~~~~d~~~I~k~a~~~~~~~~~ 149 (273)
+.++++++. +. + .+..+.+.+||+++|+.|..++.. ...+.++ +|+++.......++|++++ |++
T Consensus 159 ~~~l~~~~v-~~~~~~~~~~~v~~Gead~giv~~s~a~~----~~~v~~v~~~P~~~~~~i~~~~ai~k~~-~~~----- 227 (253)
T 3gzg_A 159 WDSVSNRLA-ESESVRAALMLVSRGEAPLGIVYGSDARA----DAKVRVVATFPDDSHDAIVYPVAALKNS-NNP----- 227 (253)
T ss_dssp HHHHTTSEE-EESSHHHHHHHHHTTSSSEEEEEHHHHHH----CTTEEEEEECCGGGSCCEEEEEEECTTC-CCT-----
T ss_pred HHHHhhcee-ecCCHHHHHHHHHcCCCCEEEEEhhcccc----CCCceEEEECCcccCceeEEEEEEECCC-ChH-----
Confidence 233455552 33 2 467788999999999999887752 2446654 8999988888899999998 666
Q ss_pred CCCCChHHHHHHHHHHhcHHHhchhhh
Q 024049 150 RVRGPSPLIHQWIEFCLQTARALPFKQ 176 (273)
Q Consensus 150 ~~~~~~~~A~~FInfllspe~q~~~~~ 176 (273)
+|++|++||+|||.|..+.+
T Consensus 228 -------~A~~Fi~fl~S~eaq~i~~~ 247 (253)
T 3gzg_A 228 -------ATAAFVSWLGSKPAKAIFAR 247 (253)
T ss_dssp -------THHHHHHHTTSHHHHHHHHH
T ss_pred -------HHHHHHHHHcCHHHHHHHHH
Confidence 79999999999999998863
No 79
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=98.95 E-value=9.5e-09 Score=101.31 Aligned_cols=153 Identities=18% Similarity=0.186 Sum_probs=97.7
Q ss_pred CEEEEeCccccccCCCCCCChHHhcC--ccc--CCcEEeeC---ChHHHHHHHHHHhCCCC-C---C---------CChh
Q 024049 1 MVIAYKKSKFRKHNLAPIEDWKDLWR--PEL--AGRISMVN---SPREVIGSVLKYMGASY-N---S---------NNID 60 (273)
Q Consensus 1 ~gi~YN~~~v~~~g~~~p~SW~dL~d--p~~--kGki~~~d---~~~~~~~~al~~~G~~~-~---~---------~~~~ 60 (273)
++|.||+++|++ +|+||++|.+ .++ +|+..+.- .+.... ..+...|+.. . . .++
T Consensus 113 ~~l~YNkdl~~~----~P~Twdel~~~a~~l~~~g~~~~~~~~~~~~~~~-~~~~~~gg~~~~~~~g~~~~~~~~~~~~- 186 (694)
T 3dm0_A 113 LSLIYNKDLLPN----PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTW-PLIAADGGYAFKYENGKYDIKDVGVDNA- 186 (694)
T ss_dssp CEEEEETTTCSS----CCSBGGGHHHHHHHHHHTTCEEECCCCSSHHHHH-HHHHHTTCEEEEEETTEEEEEEEETTSH-
T ss_pred eEEEEchHHccc----CCCCHHHHHHHHHHhhhCCcceeEeccCcHHHHH-HHHHhCCceEEecCCCcccccccCCCCH-
Confidence 479999999985 8999999976 333 35543322 122122 2223344321 1 0 112
Q ss_pred hhhhchHHHHHHHHHHHhcc--cc-cccchhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEE-ecC-----CCceeee
Q 024049 61 LQVAGGKISVQQNLALLANQ--AR-LFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV-VPK-----SGASLWA 131 (273)
Q Consensus 61 ~~~~~~~~~~~~~L~~l~~~--v~-~~~~~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~-~P~-----eG~~~~~ 131 (273)
+..++.+++.++... +. ....+.....|.+|++.|.+.++.........+.++++. +|. .+...+.
T Consensus 187 -----~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~f~~G~~am~~~g~w~~~~~~~~~~~~gv~~~P~~~g~~~~~~~g~ 261 (694)
T 3dm0_A 187 -----GAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSAVNYGVTVLPTFKGQPSKPFVGV 261 (694)
T ss_dssp -----HHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTCEEEEEECGGGHHHHHHTTCCEEEECCCEETTEECCCEEEE
T ss_pred -----HHHHHHHHHHHHHHcCCCCCCCChhhHHHHHhCCCeeEEEcCccchhhHhhcCCcceeecCCCCCCCCCCceeee
Confidence 234566666666432 11 111234567899999999888766665555566677764 563 1244567
Q ss_pred eeEEEecCCCCcccccCCCCCCChHHHHHHH-HHHhcHHHhchhhh
Q 024049 132 DLWAIPAASRLETKQIGGRVRGPSPLIHQWI-EFCLQTARALPFKQ 176 (273)
Q Consensus 132 d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FI-nfllspe~q~~~~~ 176 (273)
.+++|+++++|++ +|.+|| +|++++|.+..+..
T Consensus 262 ~~~~i~~~s~~~~------------~A~~f~~~~~~~~~~~~~~~~ 295 (694)
T 3dm0_A 262 LSAGINAASPNKE------------LAKEFLENYLLTDEGLEAVNK 295 (694)
T ss_dssp EEEEEBTTCSCHH------------HHHHHHHHTTTSHHHHHHHHH
T ss_pred EEEEEEcCCCCHH------------HHHHHHHHHhcCHHHHHHHHh
Confidence 7889999999998 999999 49999999988874
No 80
>3omb_A Extracellular solute-binding protein, family 1; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG; 2.10A {Bifidobacterium longum subsp}
Probab=98.92 E-value=4.9e-10 Score=108.06 Aligned_cols=162 Identities=15% Similarity=0.113 Sum_probs=94.2
Q ss_pred CEEEEeCccccccCCCCCCChHHhcCc--ccC-------C---cEEeeCCh--H---HH--HHHHHHHhCCC--------
Q 024049 1 MVIAYKKSKFRKHNLAPIEDWKDLWRP--ELA-------G---RISMVNSP--R---EV--IGSVLKYMGAS-------- 53 (273)
Q Consensus 1 ~gi~YN~~~v~~~g~~~p~SW~dL~dp--~~k-------G---ki~~~d~~--~---~~--~~~al~~~G~~-------- 53 (273)
.++.||++.++++|+++|+||++|.+. +++ | .+.+.-.. . .. ....+...|..
T Consensus 165 ~~l~ynkdll~~~Gl~~P~Twdel~~~~~~~k~~~p~g~G~~~~~p~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~ 244 (535)
T 3omb_A 165 QHMLINKAWLDKLGLQVPTTWDELENVLKAFKTQDPNGNGQADEIPMNIKKLEGSYFTWYSPMLLLNSTGIVTGFNKGVS 244 (535)
T ss_dssp CEEEEEHHHHHHHTCCCCCBHHHHHHHHHHHHHSCTTCSSSSCCEEECCCCCCSSSCCTTCGGGGGGGGTCCCCTTSSGG
T ss_pred cceEeeHHHHHHcCCCCCCCHHHHHHHHHHHHhhCCCCCCCCCeeeeEeccCCCcccchhhHHHHHHhhCCCcccccCCC
Confidence 378999999999999999999999963 222 2 23332110 0 00 00122334432
Q ss_pred ---CCCCChhhh---hhchHHHHHHHHHHHhcc--cc--ccc--chhHHH-HhhcC---cEEEEEeccccHHHHHhcCCC
Q 024049 54 ---YNSNNIDLQ---VAGGKISVQQNLALLANQ--AR--LFD--STHYLK-AFGIG---DVWVAVGWSSDVLPAVKRMSN 117 (273)
Q Consensus 54 ---~~~~~~~~~---~~~~~~~~~~~L~~l~~~--v~--~~~--~~~~~~-~~~~G---ev~va~~~s~~~~~~~~~~~~ 117 (273)
....+.... ......++.+++.++... +. .+. .++... .+.+| ++.+.+.|+...... ..+.+
T Consensus 245 ~~~~~~~~g~~~~~~~~~~~~~al~~~~~l~~~G~~~~~~~t~~~~~~~~~~~~~G~~a~~a~~~~w~~~~~~~-~~~~~ 323 (535)
T 3omb_A 245 EYGFYAKNGVVKSFLTSDEYKEVIKYYHKLISEGLIPAEWATKDDDAYNADQISDGKTAKTGVVFGWSPSDNFG-KLKDQ 323 (535)
T ss_dssp GGTEEEETTEEEEGGGSHHHHHHHHHHHHHHHTTSSCTTGGGCCHHHHHHHHHTTSSSCCEEEEEESCHHHHHG-GGGGG
T ss_pred CceEEecCCEEEecCCCHHHHHHHHHHHHHHHCCCCChhhhcCCHHHHHHHHhcCCCcceEEEEeecccccccC-CCccc
Confidence 000000000 012356777777777532 11 111 223333 34677 788888887544322 22445
Q ss_pred cEEE-ecCC--C-----------ceeeeeeEEEecCCCCcccccCCCCCCChHHHHHHHHHHhcHHHhchhh
Q 024049 118 VAVV-VPKS--G-----------ASLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFK 175 (273)
Q Consensus 118 v~~~-~P~e--G-----------~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~ 175 (273)
+.++ +|.. | .....++++|+++|+|++ +|.+||+|+++||.|..+.
T Consensus 324 ~~~~p~p~~~~g~~~~~~~~~~~~~~~~~~~~I~~~sk~~e------------~A~~fl~~l~s~e~q~~~~ 383 (535)
T 3omb_A 324 YIAMPVPSAPGVSPDQTVWDGSSSELSPAGLSISSHAANKD------------AALKLANLLYSEKYSVQQF 383 (535)
T ss_dssp EEECCCCBCTTCCGGGCCCCCCCSSEEEEEEEEBTTCTTHH------------HHHHHHHHHTSHHHHHHHH
T ss_pred EEEecCccCCCCCcccceeccccccccCCeEEEECCCCCHH------------HHHHHHHHhcCHHHHHHHh
Confidence 5554 4432 2 234567899999999998 9999999999999998764
No 81
>4gqo_A LMO0859 protein; virulence, pathogenesis, vaccine candidate, center for struc genomics of infectious diseases, csgid, niaid; HET: MSE PGE; 2.10A {Listeria monocytogenes}
Probab=98.86 E-value=7.5e-09 Score=96.29 Aligned_cols=168 Identities=10% Similarity=0.079 Sum_probs=92.8
Q ss_pred CEEEEeCccccccCCC-CCCChHHhcCc--cc----CCcEEeeCC----------hHHHHHHHHHHhCCCCCCCChhhhh
Q 024049 1 MVIAYKKSKFRKHNLA-PIEDWKDLWRP--EL----AGRISMVNS----------PREVIGSVLKYMGASYNSNNIDLQV 63 (273)
Q Consensus 1 ~gi~YN~~~v~~~g~~-~p~SW~dL~dp--~~----kGki~~~d~----------~~~~~~~al~~~G~~~~~~~~~~~~ 63 (273)
.+|.||+++|+++|++ ||+||++|.+- ++ .+.+.+... ....+...+...|......+....+
T Consensus 149 ~~l~Ynkdlf~~aGl~~pP~Twde~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 228 (433)
T 4gqo_A 149 ILFAWRLDTLKELGYDAPPKTYSEALEVGKKLKAKYPDKVLWAKGDLSDPTAWMRWFDFFPLYDAASKGNAFVEDGKLVA 228 (433)
T ss_dssp CEEEECHHHHHHTTCSSCCCBHHHHHHHHHHHHHHCTTCEEEECGGGGCCCGGGGGGTHHHHHHHHTTSCCSEETTEECC
T ss_pred EEEEEehhhHHHcCCCCCCCCHHHHHHHHHHHHHhCCCCceeccccccccchhhhhhHHHHHHhhhccccccccCCceee
Confidence 4789999999999985 69999999862 22 223322210 0112222223334332211110000
Q ss_pred -hchHHHHHHHHHHHhcccccccchhHHHHhhcCcEEEEEeccccHHHHHhc------CCCcEEE---ecC-----CC--
Q 024049 64 -AGGKISVQQNLALLANQARLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKR------MSNVAVV---VPK-----SG-- 126 (273)
Q Consensus 64 -~~~~~~~~~~L~~l~~~v~~~~~~~~~~~~~~Gev~va~~~s~~~~~~~~~------~~~v~~~---~P~-----eG-- 126 (273)
.....++.+++.++...- .+..+...+.|.+|++.|.+.++......... +..+.+. +|. .+
T Consensus 229 ~~~~~~~al~~~~~l~~~g-~~~~~~~~~~f~~G~~am~~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 307 (433)
T 4gqo_A 229 DDKAGTELLTFMSELQKNK-LLLASKATDPFETGTSIMADNGPWTFPNWDEKFPELKYNENYAITAPLVPDSMVNEENVA 307 (433)
T ss_dssp CHHHHHHHHHHHHHHHHTT-CEECSCCSSHHHHTSEEEEEECTTHHHHHHHHCTTCCBTTTBEEECCCBCGGGTTCSSCC
T ss_pred cCHHHHHHHHHHHHHHHhc-CCChhhHHHHHhCCceeEEEcchHHHHHHHHhchhhhcccccceeeecCCccccCccccc
Confidence 012456677777776432 22234456789999999888765554444332 2334443 232 11
Q ss_pred ceeeeeeEEE--ecCCCCcccccCCCCCCChHHHHHHHHHHhcHHHhc-hhhhhhcCCC
Q 024049 127 ASLWADLWAI--PAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARAL-PFKQEVIPGA 182 (273)
Q Consensus 127 ~~~~~d~~~I--~k~a~~~~~~~~~~~~~~~~~A~~FInfllspe~q~-~~~~~~~~~~ 182 (273)
...+..+++| +++++|++ +|.+||+||+++|.+. .+.. ..++.
T Consensus 308 ~~~~~~~~~i~~~~~sk~~e------------aA~~fl~~l~s~e~~~~~~~~-~~g~~ 353 (433)
T 4gqo_A 308 TYADSKGVVMYAQATDKEKE------------AAMDFLKFVYNDDKNDLKFLE-TTNLI 353 (433)
T ss_dssp EEEEEEEEEEBTTSCHHHHH------------HHHHHHHHHTTSHHHHHHHHH-HHCCC
T ss_pred eeccccceEEeecCCchhHH------------HHHHHHHHHcCCHHHHHHHHH-HcCCC
Confidence 2333344444 56677877 9999999999988754 4553 33543
No 82
>3a09_A ALGQ1; sugar binding protein, alginate; HET: MAW BEM MAV; 1.40A {Sphingomonas} PDB: 1y3p_A* 1y3q_A 1y3n_A* 3vlv_A* 3vlu_A* 3vlw_A* 1j1n_A* 1kwh_A
Probab=98.79 E-value=5.4e-08 Score=91.67 Aligned_cols=162 Identities=14% Similarity=0.134 Sum_probs=94.4
Q ss_pred EEEEeCccccccCCCCCCChHHhcCc---------ccCC---cEEeeCChHHHHHHHHHHhCCCC---C--C----CChh
Q 024049 2 VIAYKKSKFRKHNLAPIEDWKDLWRP---------ELAG---RISMVNSPREVIGSVLKYMGASY---N--S----NNID 60 (273)
Q Consensus 2 gi~YN~~~v~~~g~~~p~SW~dL~dp---------~~kG---ki~~~d~~~~~~~~al~~~G~~~---~--~----~~~~ 60 (273)
++.||+|.++++|+++|+||++|.+- .-.| .+.+...............|... + . .+..
T Consensus 138 ~~~ynkd~l~k~Gl~~P~T~de~~~~~~~~k~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk 217 (490)
T 3a09_A 138 GYFIRQDWLDKLHLKTPQTVDELYTVLKAFKEKDPNGNGKADEIPFINRDPEEVFRLVNFWGARSTGSNTWMDFYVENGK 217 (490)
T ss_dssp EEEEEHHHHHHTTCCCCCBHHHHHHHHHHHHHSCTTCSSSCCCEEECCSCTHHHHHGGGGGTCCSCSSSSTTCCEEETTE
T ss_pred EEEEEHHHHHHcCCCCCCchhHHHHHHHHHHHhcccccCCcceeeeeccCCcchhhhhhhhhhhhccccccchhhhccCc
Confidence 68999999999999999999998752 1112 34443322222211222222110 0 0 0000
Q ss_pred h--hh-hchHHHHHHHHHHHhcc--c----ccccchhHHHHhhcCcEEEEEeccccHHHHHh----cCCCcEE--E-ecC
Q 024049 61 L--QV-AGGKISVQQNLALLANQ--A----RLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVK----RMSNVAV--V-VPK 124 (273)
Q Consensus 61 ~--~~-~~~~~~~~~~L~~l~~~--v----~~~~~~~~~~~~~~Gev~va~~~s~~~~~~~~----~~~~v~~--~-~P~ 124 (273)
. .+ .....++.+.+.++... + .+...++..+.|.+|++.+.+.|......... ..+...+ + .|.
T Consensus 218 ~~~~~~~~~~~~al~~~~~l~~~G~i~~~~~t~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 297 (490)
T 3a09_A 218 IKHPFAEVAFKDGIKHVAQWYKEGLIDPEIFTRKARSREQTFGNNIGGMTHDWFASTALFNDALSKNIPGFKLVPMAPPI 297 (490)
T ss_dssp EECGGGSHHHHHHHHHHHHHHHTTSBCTTTTTCGGGHHHHHHHTTCEEEEEEEHHHHHHHHHHTTTTSTTCCEEEECCCB
T ss_pred eeeccCCHHHHHHHHHHHHHHHcCCCCcccccCCHHHHHHHHHCCCEEEEEechHHHHHHHHHHhhcCCCceEEeeccCc
Confidence 0 00 11355677777776532 1 11223567889999999988877665543322 2233333 2 221
Q ss_pred --CCc--------eeeeeeEEEecCCCCcccccCCCCCCChHHHHHHHHHHhcHHHhchhh
Q 024049 125 --SGA--------SLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFK 175 (273)
Q Consensus 125 --eG~--------~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~ 175 (273)
.|. .....+++|+++|+|++ +|.+||+||++||.|..+.
T Consensus 298 ~~~g~~~~~~~~~~~~~~~~~I~~~sk~~e------------~A~~fl~~l~s~e~~~l~~ 346 (490)
T 3a09_A 298 NSKGQRWEEDARQIPRPDGWAITATNKNPV------------ETIKLFDFYFGPKGRELSN 346 (490)
T ss_dssp CTTSCCCBCCCCCSSCSCEEEEBTTCSCHH------------HHHHHHHHTTSHHHHHHHH
T ss_pred CCCCcccCCCccccccceEEEEECCCCCHH------------HHHHHHHHhCCHHHHHHHh
Confidence 121 12345699999999998 9999999999999987653
No 83
>3vlv_A ALGQ1; sugar binding protein, alginate; HET: MAW LGU; 1.50A {Sphingomonas SP} SCOP: c.94.1.1 PDB: 3vlu_A* 3vlw_A* 1y3n_A* 1y3p_A* 1y3q_A 1j1n_A* 1kwh_A
Probab=98.71 E-value=4.7e-08 Score=93.56 Aligned_cols=162 Identities=15% Similarity=0.189 Sum_probs=88.6
Q ss_pred EEEEeCccccccCCCCCCChHHhcC---------cccCC---cEEeeCChHHHHHHHHHHhCCCC---------CCCChh
Q 024049 2 VIAYKKSKFRKHNLAPIEDWKDLWR---------PELAG---RISMVNSPREVIGSVLKYMGASY---------NSNNID 60 (273)
Q Consensus 2 gi~YN~~~v~~~g~~~p~SW~dL~d---------p~~kG---ki~~~d~~~~~~~~al~~~G~~~---------~~~~~~ 60 (273)
++.||++.++++|+++|+||++|.+ |.-.| .+.+.......+...+...|... ...+..
T Consensus 138 ~~~ynkd~l~~~Gl~~P~T~del~~~~~~~k~~~p~g~G~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~g~ 217 (502)
T 3vlv_A 138 GYFIRQDWLDKLHLKTPQTVDELYTVLKAFKEKDPNGNGKADEIPFINRDPEEVFRLVNFWGARSTGSNTWMDFYVENGK 217 (502)
T ss_dssp EEEEEHHHHHHTTCCCCCBHHHHHHHHHHHHHSCTTCSSSCCCEEECCSCTTHHHHGGGGGTCCSCSSSSTTCCEEETTE
T ss_pred ceEEeHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCCCCCCcceeeeeccCCchHHHHHHHhCCCCcCCCCcceEEecCCE
Confidence 6899999999999999999999984 33223 35554322122222222333221 000100
Q ss_pred h--h-hhchHHHHHHHHHHHhcc--cc--ccc-chhHHHHhhcCcEE-EEEeccccH--H-HH-HhcCC--CcEEEecC-
Q 024049 61 L--Q-VAGGKISVQQNLALLANQ--AR--LFD-STHYLKAFGIGDVW-VAVGWSSDV--L-PA-VKRMS--NVAVVVPK- 124 (273)
Q Consensus 61 ~--~-~~~~~~~~~~~L~~l~~~--v~--~~~-~~~~~~~~~~Gev~-va~~~s~~~--~-~~-~~~~~--~v~~~~P~- 124 (273)
. . ......++.+++.++... +. .+. +.+..+.+.+|.+. +...|.... . .. ....+ .+..+.|.
T Consensus 218 ~~~~~~~~~~~~~l~~~~~l~~~G~i~~~~~t~~~~~~~~~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~p~ 297 (502)
T 3vlv_A 218 IKHPFAEVAFKDGIKHVAQWYKEGLIDPEIFTRKARSREQTFGNNIGGMTHDWFASTALFNDALSKNIPGFKLVPMAPPI 297 (502)
T ss_dssp EECGGGSHHHHHHHHHHHHHHHTTCBCTTTTTCGGGHHHHHHHTTCEEEEEEEHHHHHTHHHHTTTTSTTCCEEEECCCB
T ss_pred EEeCCCCHHHHHHHHHHHHHHHCCCCChhhhcCChHHHHHHHcCCeEEEEeecccccchhhhhhhhcCCCcceEEecCcc
Confidence 0 0 012355677777777532 11 121 12334455555543 344453322 1 11 12223 34433332
Q ss_pred --CCc--------eeeeeeEEEecCCCCcccccCCCCCCChHHHHHHHHHHhcHHHhchhh
Q 024049 125 --SGA--------SLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFK 175 (273)
Q Consensus 125 --eG~--------~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~ 175 (273)
.|. .....+++|+++|+|++ +|.+||+||++||.|..+.
T Consensus 298 ~~~g~~~~~~~~~~~~~~~~~I~~~sk~~e------------~A~~fl~~l~s~e~~~l~~ 346 (502)
T 3vlv_A 298 NSKGQRWEEDARQIPRPDGWAITATNKNPV------------ETIKLFDFYFGPKGRELSN 346 (502)
T ss_dssp CTTSCCCBCCCCCSSCSCEEEEBTTCSCHH------------HHHHHHHHTTSHHHHHHHH
T ss_pred CCCCccccccccCCCCCceEEEeCCCCCHH------------HHHHHHHHhcCHHHHHHHh
Confidence 232 23346899999999998 9999999999999987653
No 84
>3k6v_A Solute-binding protein MA_0280; MODA, molybdate, periplasmic BIN protein, ABC transporter, transport protein, ligand, metal- protein; HET: CIT; 1.69A {Methanosarcina acetivorans} PDB: 3k6u_A* 3k6w_A 3k6x_A
Probab=98.44 E-value=1.7e-06 Score=80.17 Aligned_cols=77 Identities=13% Similarity=0.046 Sum_probs=59.4
Q ss_pred hhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEE-ecCCCcee-------------------------eeeeEEEecCC
Q 024049 87 THYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV-VPKSGASL-------------------------WADLWAIPAAS 140 (273)
Q Consensus 87 ~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~-~P~eG~~~-------------------------~~d~~~I~k~a 140 (273)
.+....+.+|++++|+.|..++... + +.|+ +|.+-... -...++|++++
T Consensus 230 ~~~l~~v~~G~aDag~vy~S~a~~~---~--l~~v~lP~~~n~~~~~~~~~y~~v~v~~~~~~~~~~~Pi~y~~ai~k~a 304 (354)
T 3k6v_A 230 VELSSALETGEIDYLYIYRSVAEQH---G--FEYVALPPAIDLSSLEYADNYSKVQVEMVNGEVVTGSPIVYGVTIPNNA 304 (354)
T ss_dssp HHHHHHHHHTSCSEEEEEHHHHHHH---T--CEEEECCTTTSSCCGGGHHHHTTEEEECTTSCEEECCCCEEEEECCTTC
T ss_pred HHHHHHHHcCCCCEEEEEhhhhhhc---C--CcEEeCChhhccccccccccccceeeeccccccccCCceeEeEEeecCC
Confidence 4678899999999999998887654 2 5654 66541110 14579999999
Q ss_pred CCcccccCCCCCCChHHHHHHHHHHhcHHHhchhhhhhcCCC
Q 024049 141 RLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQEVIPGA 182 (273)
Q Consensus 141 ~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~~~~~~~ 182 (273)
+|++ +|++|++||+||+.|..+.+ .||.
T Consensus 305 ~~~~------------~A~~Fi~fL~S~eaq~i~~~--~Gf~ 332 (354)
T 3k6v_A 305 ENSE------------LATEFVALLLGETGQQIFIE--NGQP 332 (354)
T ss_dssp TTHH------------HHHHHHHHHHSHHHHHHHHH--TTCC
T ss_pred CCHH------------HHHHHHHHHcCHHHHHHHHH--CCCc
Confidence 9988 89999999999999998863 3654
No 85
>3muq_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.05A {Vibrio parahaemolyticus}
Probab=95.75 E-value=0.021 Score=49.61 Aligned_cols=65 Identities=5% Similarity=-0.039 Sum_probs=47.6
Q ss_pred EeccccHHHHHhcCCCcEEEecCCCceeeeeeEEEecCCCCcccccCCCCCCChHHHHHHHHHHhcHHHhchhh
Q 024049 102 VGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFK 175 (273)
Q Consensus 102 ~~~s~~~~~~~~~~~~v~~~~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~ 175 (273)
++-.+.++....+ .++.++++.++.++.+.++.+.+.++|+. -..+.|++|++||+||++|..+.
T Consensus 169 l~dr~t~l~~~~~-~~l~i~~~gd~~l~n~y~v~~v~p~~~~~--------~~~~~a~~f~~wl~s~~gQ~~i~ 233 (237)
T 3muq_A 169 MSDRGTWLAYQNK-LDLEILFQGDEKLFNPYQVILVNPERYPT--------INYQGAKAFSDWLVNPRGQELIN 233 (237)
T ss_dssp EEEHHHHHHHGGG-CSCEEEECCCGGGEEEEEEEEECTTTCTT--------SCHHHHHHHHHHHHSHHHHHHHH
T ss_pred EEechHHhhcccc-CCeEEEEcCCCceeeeeEEEEECcccCCc--------cCHHHHHHHHHHHcCHHHHHHHH
Confidence 3334455554443 37899999998999998888777666442 01348999999999999998876
No 86
>3lr1_A Tungstate ABC transporter, periplasmic tungstate- binding protein; the tungstate ABC transporter, structural genomics, PSI, MCSG; 1.80A {Geobacter sulfurreducens}
Probab=92.66 E-value=0.21 Score=43.25 Aligned_cols=66 Identities=3% Similarity=-0.088 Sum_probs=40.8
Q ss_pred EeccccHHHHHhcCCCcEEEecCCCceeeeeeEEEecCCCCcccccCCCCCCChHHHHHHHHHHhcHHHhchhh
Q 024049 102 VGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFK 175 (273)
Q Consensus 102 ~~~s~~~~~~~~~~~~v~~~~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~ 175 (273)
++-.+.++...+...++.+++-.+..++....+.+..-.+|+. -..+.|++|++||.||++|..+.
T Consensus 169 ltdr~t~l~~~~~~~~l~i~~~~d~~l~n~y~~~~v~p~~~~~--------~~~~~a~~f~~~l~s~~~q~~i~ 234 (236)
T 3lr1_A 169 LTDRGTYNAFKGAKTDLVILFQGEKGLFNPYGIMAVNPKKFPH--------VKYDLAMKLIDYVTGPEGLKIIS 234 (236)
T ss_dssp EEEHHHHHHHBTTTBCCEEEEEC---CCEEEEEEEECTTTCTT--------SCHHHHHHHHHHHTSHHHHHHHH
T ss_pred EecchhhhhcccCCCCeEEEEcCCcceeeceeEEEECcccCCc--------cCHHHHHHHHHHhcCHHHHHHHh
Confidence 3334444444323456888777666777777666555444431 01459999999999999998775
No 87
>4gd5_A Phosphate ABC transporter, phosphate-binding PROT; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.70A {Clostridium perfringens}
Probab=90.90 E-value=0.25 Score=42.93 Aligned_cols=39 Identities=13% Similarity=0.041 Sum_probs=29.1
Q ss_pred eeeeeEEEecCCCCcccccCCCCCCChHHHHHHHHHHhcHHHhchhhhhhcCC
Q 024049 129 LWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQEVIPG 181 (273)
Q Consensus 129 ~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~~~~~~ 181 (273)
+.-..+.|.+++++.+ +|++|++|++|+|+|..+.+ .||
T Consensus 237 l~rp~~~v~~~~~~~~------------~ak~F~~f~~S~egQ~ii~~--~Gf 275 (279)
T 4gd5_A 237 VSRPFLAVYKEENLTE------------SGKSFIDFILSEEGQDIVAK--EHL 275 (279)
T ss_dssp CEEEEEEEECTTTCCH------------HHHHHHHHHHSHHHHHHHHH--TTC
T ss_pred cEEEEEEEEcCCCCCH------------HHHHHHHHHcCHHHHHHHHH--ccC
Confidence 3333455677777666 89999999999999998763 355
No 88
>3kn3_A Putative periplasmic protein; alpha-beta structure, periplasmic binding protein fold, STRU genomics, PSI-2, protein structure initiative; HET: GSH CIT; 2.41A {Wolinella succinogenes}
Probab=90.62 E-value=0.67 Score=40.20 Aligned_cols=66 Identities=9% Similarity=-0.009 Sum_probs=42.1
Q ss_pred EeccccHHHHH---hcCCCcEEEecCCCceeeeeeEEEecCCCCcccccCCCCCCChHHHHHHHHHHhcHHHhchhh
Q 024049 102 VGWSSDVLPAV---KRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFK 175 (273)
Q Consensus 102 ~~~s~~~~~~~---~~~~~v~~~~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~ 175 (273)
++-.+.++... +...++...+-.+..++.+.++.+..-.+||. -..+.|++|++||.||++|..+.
T Consensus 170 l~dr~t~l~~~~~~~~~~~l~i~~~gd~~l~n~y~~~~v~p~~~~~--------~~~~~a~~f~~~l~s~~~q~~i~ 238 (242)
T 3kn3_A 170 LTDRGTFIKYESNHKGKPPMVIVLEGDNTLKNFYSIMAVNPKRCEK--------ADYKGAKQFIDWIVSEKMQAEIA 238 (242)
T ss_dssp EEEHHHHHHHHHHSCSSCSCEEEECCCGGGCCEEEEEEECTTTCTT--------SCHHHHHHHHHHHHSHHHHHHHH
T ss_pred EeeehhhhhcchhhcCCCCeEEEEcCCcceEeeeEEEEECcccCCc--------cCHHHHHHHHHHHcCHHHHHHHH
Confidence 44455555442 33456787776555666666655554333321 01459999999999999999886
No 89
>4h1x_A PBP 2, phosphate-binding protein PSTS 2; periplasmic binding protein, PF12849 family; HET: MSE CIT; 1.77A {Streptococcus pneumoniae}
Probab=78.21 E-value=2.2 Score=37.19 Aligned_cols=40 Identities=10% Similarity=-0.019 Sum_probs=28.3
Q ss_pred eeeeeeEEEecCCCCcccccCCCCCCChHHHHHHHHHHhcHHHhchhhhhhcCCC
Q 024049 128 SLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQEVIPGA 182 (273)
Q Consensus 128 ~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~~~~~~~ 182 (273)
+++-..+.+.++.+. . ++++||+|++|++.|..+. + .||.
T Consensus 101 PlsRply~y~~~~~~-~------------~vk~Fl~f~lS~~GQ~iv~-~-~Gyv 140 (265)
T 4h1x_A 101 PLQRPFNIVWSSNLS-K------------LGQDFISFIHSKQGQQVVT-D-NKFI 140 (265)
T ss_dssp CSEEEEEEEECTTCC-H------------HHHHHHHHHHBHHHHHHHH-H-TTCB
T ss_pred CeEEEEEEEECCCCC-H------------HHHHHHHHHhhcccceeee-c-CCcE
Confidence 455555556665443 3 7999999999999998775 3 4664
No 90
>3cvg_A Putative metal binding protein; PSI-II, NYSGXRC, periplasmic, structural GENO protein structure initiative; 1.97A {Coccidioides immitis}
Probab=73.68 E-value=3.5 Score=35.85 Aligned_cols=38 Identities=5% Similarity=0.067 Sum_probs=29.8
Q ss_pred ceeeeeeEEEecCCCCcccccCCCCCCChHHHHHHHHHHhcHH-Hhchhhh
Q 024049 127 ASLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTA-RALPFKQ 176 (273)
Q Consensus 127 ~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInfllspe-~q~~~~~ 176 (273)
...+.-.+++.+++++.. +|++|++|+++++ +|..+.+
T Consensus 232 ~~~r~~~l~~~~~~~~s~------------aa~~Fi~~l~s~e~gq~i~~~ 270 (294)
T 3cvg_A 232 PLLNPAHLLVGARAKNAE------------MAKEFAKWLVSKEGGQKVIEG 270 (294)
T ss_dssp TTEEEEEEEEBSSCSSHH------------HHHHHHHHHHSTTTHHHHHHT
T ss_pred ceeeEEEEEEeCCCCCHH------------HHHHHHHHHcCcHHHHHHHHH
Confidence 344555677778877766 8999999999999 9988863
No 91
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=64.73 E-value=23 Score=27.97 Aligned_cols=79 Identities=14% Similarity=-0.023 Sum_probs=47.3
Q ss_pred cccc-hhHHHHhhcCcEEEEEeccccHHHHHhcCC--CcEEEecCCCceeeeeeEEEecCCCCcccccCCCCCCChHHHH
Q 024049 83 LFDS-THYLKAFGIGDVWVAVGWSSDVLPAVKRMS--NVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPSPLIH 159 (273)
Q Consensus 83 ~~~~-~~~~~~~~~Gev~va~~~s~~~~~~~~~~~--~v~~~~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~ 159 (273)
.+.+ .+..+++.+|++++++.+...+.....+.. .+.. ++.. .....-+++++++.+..+ ...
T Consensus 140 ~~~~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~k~~~l~~------------~~~ 205 (233)
T 1ii5_A 140 ETNNLTAAITLLQKKQVEAVMFDRPALIYYTRQNPNLNLEV-TEIR-VSLEPYGFVLKENSPLQK------------TIN 205 (233)
T ss_dssp EESSHHHHHHHHHTTSCSEEEEEHHHHHHHHHHCGGGCEEE-CSCC-SEEEEEEEEEETTCTTHH------------HHH
T ss_pred EcCCHHHHHHHHHcCCccEEEeCHHHHHHHHHhCCCCcEEE-eCcc-ccccceEEEEcCCchHHH------------HHH
Confidence 3443 467899999999999887766655554443 3333 2222 222344678888865433 667
Q ss_pred HHHHHHh-cHHHhchhh
Q 024049 160 QWIEFCL-QTARALPFK 175 (273)
Q Consensus 160 ~FInfll-spe~q~~~~ 175 (273)
++|.-|. +.+.+..+.
T Consensus 206 ~~l~~l~~~g~~~~i~~ 222 (233)
T 1ii5_A 206 VEMLNLLYSRVIAEFTE 222 (233)
T ss_dssp HHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHH
Confidence 7777776 344444443
No 92
>4ecf_A ABC-type phosphate transport system, periplasmic; ABC transporter, phosphate transport receptor; HET: MSE; 1.55A {Lactobacillus brevis}
Probab=61.06 E-value=9.4 Score=32.66 Aligned_cols=26 Identities=15% Similarity=0.178 Sum_probs=20.1
Q ss_pred HHHHHHHHHhcHHHhchhhhhhcCCCC
Q 024049 157 LIHQWIEFCLQTARALPFKQEVIPGAS 183 (273)
Q Consensus 157 ~A~~FInfllspe~q~~~~~~~~~~~~ 183 (273)
++.+|++|+++++.|..+..+ .||.+
T Consensus 219 ~~~~F~~~~~s~~gq~~~~~~-~G~~p 244 (264)
T 4ecf_A 219 LTKAFITYVQSPAIQNTLVRQ-LGYLS 244 (264)
T ss_dssp HHHHHHHHHHSHHHHTTHHHH-TTCBC
T ss_pred HHHHHHHHHhCchhHHHHHHH-CCCee
Confidence 899999999999998655533 46643
No 93
>1twy_A ABC transporter, periplasmic substrate-binding PR; nysgxrc target, structural genomics, protei structure initiative, PSI; 1.65A {Vibrio cholerae o1 biovar eltor} SCOP: c.94.1.1
Probab=56.14 E-value=39 Score=27.72 Aligned_cols=76 Identities=9% Similarity=-0.039 Sum_probs=43.9
Q ss_pred hhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEE-ecC---------CCc-eeeeee-EEEecCCCCcccccCCCCCCC
Q 024049 87 THYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV-VPK---------SGA-SLWADL-WAIPAASRLETKQIGGRVRGP 154 (273)
Q Consensus 87 ~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~-~P~---------eG~-~~~~d~-~~I~k~a~~~~~~~~~~~~~~ 154 (273)
....+++.+|+..+++.....+ ...+... ++. .|. ...... ++..++ .+..
T Consensus 188 ~~~~~~v~~g~~gi~~~p~~~~------~~~l~~~~l~~~~p~~~~i~~~~~~~~~~~~l~~~~~-~~~~---------- 250 (290)
T 1twy_A 188 SMMKTLVNHNTQAVGFISIGSV------DKSVKAIQFEKADPTSDNIAKHTYQLSRPFLILHYSD-NADE---------- 250 (290)
T ss_dssp HHHHHHHHHCTTEEEEEEGGGC------CTTSEECEETTBCCCHHHHHTTCSCCEEEEEEEECTT-TCCH----------
T ss_pred HHHHHHHhcCCCcEEEeeHHHh------hCCceEeEecCCCCCHHHHhcCCCccEEEEEEEEcCC-CCCH----------
Confidence 3567888889767777654433 1234332 221 111 222233 333455 5544
Q ss_pred hHHHHHHHHHHhcHHHhchhhhhhcCCCC
Q 024049 155 SPLIHQWIEFCLQTARALPFKQEVIPGAS 183 (273)
Q Consensus 155 ~~~A~~FInfllspe~q~~~~~~~~~~~~ 183 (273)
.+..|++|+.+.+.|..+.. .||.+
T Consensus 251 --~~~~f~~~l~~~~~q~~~~~--~g~~p 275 (290)
T 1twy_A 251 --QTKEFIAFLKSESAKKLIVE--YGYIM 275 (290)
T ss_dssp --HHHHHHHHHHSHHHHHHHHH--TTCBC
T ss_pred --HHHHHHHHHhCHHHHHHHHH--CCCcc
Confidence 89999999999999887753 25543
No 94
>4exl_A PBP 1, phosphate-binding protein PSTS 1; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; 1.70A {Streptococcus pneumoniae}
Probab=54.60 E-value=14 Score=31.63 Aligned_cols=25 Identities=12% Similarity=0.204 Sum_probs=19.1
Q ss_pred HHHHHHHHHhcHHHhchhhhhhcCCC
Q 024049 157 LIHQWIEFCLQTARALPFKQEVIPGA 182 (273)
Q Consensus 157 ~A~~FInfllspe~q~~~~~~~~~~~ 182 (273)
++++|++|+++++.|..+..+ .||.
T Consensus 219 ~~~~F~~~~~s~~gq~~~~~~-~G~v 243 (265)
T 4exl_A 219 LAAEFLNFVLSDETQEGIVKG-LKYI 243 (265)
T ss_dssp HHHHHHHHHHSHHHHHTHHHH-TTCB
T ss_pred HHHHHHHHHhCcchHHHHHHh-CCCc
Confidence 799999999999999444433 4664
No 95
>1pc3_A Phosphate-binding protein 1; phosphate transport receptor, immonodominant antigen, mycoba tuberculosis, ION-dipole interactions; 2.16A {Mycobacterium tuberculosis} SCOP: c.94.1.1
Probab=47.38 E-value=44 Score=29.76 Aligned_cols=17 Identities=0% Similarity=0.204 Sum_probs=14.6
Q ss_pred HHHHHHHHHhcHHHhchh
Q 024049 157 LIHQWIEFCLQTARALPF 174 (273)
Q Consensus 157 ~A~~FInfllspe~q~~~ 174 (273)
.+++||+|++++ .|..+
T Consensus 307 ~~~~Fl~~~~s~-gq~~~ 323 (350)
T 1pc3_A 307 TLQAFLHWAITD-GNKAS 323 (350)
T ss_dssp HHHHHHHHHTTG-GGSHH
T ss_pred HHHHHHHHHHcC-cchhh
Confidence 799999999997 77665
No 96
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=44.48 E-value=72 Score=27.65 Aligned_cols=120 Identities=15% Similarity=0.117 Sum_probs=0.0
Q ss_pred CEEEEeCccccccCCCCCCChHHhcCcccCC-cEEee--CChHHHHHHHHHHhCCCCCCCChhhhhhchHHHHHHHHHHH
Q 024049 1 MVIAYKKSKFRKHNLAPIEDWKDLWRPELAG-RISMV--NSPREVIGSVLKYMGASYNSNNIDLQVAGGKISVQQNLALL 77 (273)
Q Consensus 1 ~gi~YN~~~v~~~g~~~p~SW~dL~dp~~kG-ki~~~--d~~~~~~~~al~~~G~~~~~~~~~~~~~~~~~~~~~~L~~l 77 (273)
.+|+.+++. +.+|++|| +| +|++. ......+..+|...|.+......-
T Consensus 101 ~~lvv~~~s-------~i~s~~DL-----kGk~I~v~~gs~~~~~~~~~l~~~Gl~~~~v~~v----------------- 151 (348)
T 3uif_A 101 SYLVVPKNS-------TAKSIKDL-----KGKKIALHRGRPWELAFSNLLQSEGLTFKDFKIV----------------- 151 (348)
T ss_dssp CEEEEETTC-------CCCSGGGG-----TTSEEEECTTSTHHHHHHHHHHHTTCCGGGSEEE-----------------
T ss_pred eEEEEECCC-------CCCCHHHc-----CCCEEEecCCChHHHHHHHHHHHcCCCHHHeEEE-----------------
Q ss_pred hcccccccchhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEEecCCCceeeeeeEEEecCCC----CcccccCCCCCC
Q 024049 78 ANQARLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASR----LETKQIGGRVRG 153 (273)
Q Consensus 78 ~~~v~~~~~~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~~P~eG~~~~~d~~~I~k~a~----~~~~~~~~~~~~ 153 (273)
.+...+...+|.+|++++++.+. ....+...|..-.+.-..+-...+..+.++..... |++
T Consensus 152 -----~~~~~~~~~al~~G~vDa~~~~~-~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~--------- 216 (348)
T 3uif_A 152 -----NVNPQVGAAALASGTVDGFFSLF-DSYILEDRGVGKIIWSTKTAPVDWKLMGGVWARNDFVKQNPE--------- 216 (348)
T ss_dssp -----CCCHHHHHHHHHHTSSSEEEEST-THHHHHHTTSEEEEEEGGGSCGGGSCCEEEEEEHHHHHHCHH---------
T ss_pred -----ECCHHHHHHHHHcCCCCEEEech-HHHHHHhcCCcEEEEeccccCCCCcceeEEEECHHHHHHCHH---------
Q ss_pred ChHHHHHHHHHHhc
Q 024049 154 PSPLIHQWIEFCLQ 167 (273)
Q Consensus 154 ~~~~A~~FInflls 167 (273)
...+|++-+..
T Consensus 217 ---~~~~~~~a~~~ 227 (348)
T 3uif_A 217 ---ITQAIVTAYLK 227 (348)
T ss_dssp ---HHHHHHHHHHH
T ss_pred ---HHHHHHHHHHH
No 97
>3c5t_B Exendin-4, exenatide; ligand-bound G protein-coupled receptor extracellular domain protein coupled receptor, glycoprotein, membrane; HET: 10M; 2.10A {Homo sapiens} SCOP: j.6.1.1 PDB: 3c59_B*
Probab=41.72 E-value=15 Score=21.34 Aligned_cols=13 Identities=15% Similarity=0.289 Sum_probs=11.2
Q ss_pred HHHHHHHHHHhcH
Q 024049 156 PLIHQWIEFCLQT 168 (273)
Q Consensus 156 ~~A~~FInfllsp 168 (273)
.+|++||+||++.
T Consensus 9 ~aakdFv~WL~ng 21 (31)
T 3c5t_B 9 EAVRLFIEWLKNG 21 (31)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhC
Confidence 3899999999974
No 98
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=41.36 E-value=38 Score=26.47 Aligned_cols=75 Identities=13% Similarity=-0.060 Sum_probs=43.6
Q ss_pred hhHHHHhhcCcEEEEEeccccHHHHHhcCC--CcEEEecCCCceeeeeeEEEecCCCCcccccCCCCCCChHHHHHHHHH
Q 024049 87 THYLKAFGIGDVWVAVGWSSDVLPAVKRMS--NVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEF 164 (273)
Q Consensus 87 ~~~~~~~~~Gev~va~~~s~~~~~~~~~~~--~v~~~~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInf 164 (273)
.+...++.+|++++++.....+.....+.. .+.+. +.. .....-+++++++.+-.+ ...++|..
T Consensus 141 ~~~~~~l~~g~~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~l~~------------~~~~~l~~ 206 (228)
T 2pyy_A 141 EEAYKALQTKKADAVVFDAPVLLFYAANEGKGKVEIV-GSI-LREESYGIILPNNSPYRK------------PINQALLN 206 (228)
T ss_dssp HHHHHHHHTTSSSEEEEEHHHHHHHHHTTTTTTEEEE-EEE-EEEEEECCEECTTCTTHH------------HHHHHHHH
T ss_pred HHHHHHHHcCCCCEEEecHHHHHHHHHhCCCCcEEEe-ccc-ccceeEEEEEeCChHHHH------------HHHHHHHH
Confidence 468899999999998887665555544433 34433 211 112233567777654333 56667766
Q ss_pred Hhc-HHHhchhh
Q 024049 165 CLQ-TARALPFK 175 (273)
Q Consensus 165 lls-pe~q~~~~ 175 (273)
|.. .+.+..+.
T Consensus 207 l~~~g~~~~i~~ 218 (228)
T 2pyy_A 207 LKENGTYQSLYD 218 (228)
T ss_dssp HHHTTHHHHHHH
T ss_pred HHhCCcHHHHHH
Confidence 654 34454443
No 99
>4ef1_A Pheromone COB1/lipoprotein, YAEC family; periplasmic methionine binding protein, NLPA lipoprotein, ST genomics; 1.90A {Enterococcus faecalis} PDB: 4ef2_A*
Probab=40.89 E-value=26 Score=30.18 Aligned_cols=78 Identities=10% Similarity=0.018 Sum_probs=53.9
Q ss_pred cchhHHHHhhcCcEEEEEeccccHHHHHhcCCCc---EEEecCCCceeeeeeEEEecCCCCcccccCCCCCCChHHHHHH
Q 024049 85 DSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNV---AVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPSPLIHQW 161 (273)
Q Consensus 85 ~~~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v---~~~~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~F 161 (273)
...+....|.+|++++++.++..+..+ |.+. ...+-. -..-++..+++-++-++.+ ..++|
T Consensus 157 ~aaql~~al~dg~vDaavin~n~a~~a---gl~p~~dal~~E~-~~~~y~n~i~vr~~~~~~~------------~~k~l 220 (246)
T 4ef1_A 157 DPAIMTTLYDNEEGAAVLINSNFAVDQ---GLNPKKDAIALEK-ESSPYANIIAVRKEDENNE------------NVKKL 220 (246)
T ss_dssp CGGGHHHHHHTTCSSEEEECHHHHHHT---TCCHHHHCSEECS-CCGGGCEEEEEEGGGTTCH------------HHHHH
T ss_pred CHHHHHHHhccccccEEEEechHHHHc---CCCCccCceEEcC-CCCCeEEEEEEeccccCCH------------HHHHH
Confidence 456788899999999999986655443 3221 112221 1234677788877766655 89999
Q ss_pred HHHHhcHHHhchhhhhh
Q 024049 162 IEFCLQTARALPFKQEV 178 (273)
Q Consensus 162 Infllspe~q~~~~~~~ 178 (273)
++-+-|+|++.-+.+.+
T Consensus 221 v~~~~s~~v~~~i~~~~ 237 (246)
T 4ef1_A 221 VKVLRSKEVQDWITKKW 237 (246)
T ss_dssp HHHHHSHHHHHHHHHHT
T ss_pred HHHHcCHHHHHHHHHHc
Confidence 99999999999887543
No 100
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=38.27 E-value=47 Score=26.42 Aligned_cols=52 Identities=8% Similarity=0.077 Sum_probs=34.0
Q ss_pred hhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEEecCCCceeeeeeEEEec
Q 024049 87 THYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPA 138 (273)
Q Consensus 87 ~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~~P~eG~~~~~d~~~I~k 138 (273)
.+...++.+|++++.+.+...+....++.+.+..+.+..-.....-++++++
T Consensus 156 ~~~~~~l~~grvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 207 (239)
T 3kbr_A 156 VTIFQQIVDGKADLMMTDAIEARLQSRLHPELCAVHPQQPFDFAEKAYLLPR 207 (239)
T ss_dssp TTHHHHHHTTSCSEEEEEHHHHHHHHHHCTTEEECCCC-CCCCEEECCEECS
T ss_pred HHHHHHHHcCCcCEEEEchHHHHHHHHhCCCcEEecCCCCccccceEEEEcC
Confidence 5788999999999999887766666665656666543221222233567777
No 101
>1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.30A {Archaeoglobus fulgidus} SCOP: c.94.1.1
Probab=38.16 E-value=54 Score=27.35 Aligned_cols=66 Identities=11% Similarity=-0.039 Sum_probs=42.3
Q ss_pred hhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEEec-------CCCceeeeeeEEEecCCCCcccccCCCCCCChHHHH
Q 024049 87 THYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVP-------KSGASLWADLWAIPAASRLETKQIGGRVRGPSPLIH 159 (273)
Q Consensus 87 ~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~~P-------~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~ 159 (273)
.+..++|.+|++++++.|......+...|. ..+.. ..|.+.-...+++.++- |++ ...
T Consensus 134 ~~~~~al~~G~vDa~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~p~------------~v~ 198 (280)
T 1zbm_A 134 DRIIQAVLDEEVDAGLLIHEGQITYADYGL--KCVLDLWDWWSEQVKLPLPLGLNAIRRDL-SVE------------VQE 198 (280)
T ss_dssp GGHHHHHHTTSSSEEEECSGGGGTGGGGTC--EEEEEHHHHHHTTCSSCEEEEEEEEETTS-CHH------------HHH
T ss_pred HHHHHHHHcCCCCEEEEechHHhHHHhcCC--eEeccHHHHHHHhhCCCCCeeEEEEcccC-CHH------------HHH
Confidence 567889999999999888654444444443 32221 12444334456777765 776 888
Q ss_pred HHHHHHhc
Q 024049 160 QWIEFCLQ 167 (273)
Q Consensus 160 ~FInflls 167 (273)
+|++-+..
T Consensus 199 ~~~~a~~~ 206 (280)
T 1zbm_A 199 EFLRAMRE 206 (280)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98887765
No 102
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=34.60 E-value=83 Score=25.22 Aligned_cols=53 Identities=23% Similarity=0.047 Sum_probs=34.0
Q ss_pred hhHHHHhhcCcEEEEEeccccHHHHHhcCC--CcEEEecCCCceeeeeeEEEecCCC
Q 024049 87 THYLKAFGIGDVWVAVGWSSDVLPAVKRMS--NVAVVVPKSGASLWADLWAIPAASR 141 (273)
Q Consensus 87 ~~~~~~~~~Gev~va~~~s~~~~~~~~~~~--~v~~~~P~eG~~~~~d~~~I~k~a~ 141 (273)
.+..+++.+|++++.+.+...+....++.. ++.++-+. .....-+++++++.+
T Consensus 161 ~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~k~~~ 215 (249)
T 4f3p_A 161 DQAYLALEAGRVDAAMHDTPNVLFFVNNEGKGRVKVAGAP--VSGDKYGIGFPKGSP 215 (249)
T ss_dssp HHHHHHHHTTSSSEEEEEHHHHHHHHHTTTTTTEEEEEEE--EEEEEEEEEEETTCT
T ss_pred HHHHHHHHcCCeeEEEeCcHHHHHHHHhCCCCceEEecCC--CCCccEEEEEcCCch
Confidence 467899999999999988777666555543 34443211 111223678888875
No 103
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=34.60 E-value=36 Score=28.79 Aligned_cols=68 Identities=13% Similarity=0.101 Sum_probs=41.7
Q ss_pred hhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEEecCCCceeeeeeEEEecC--CCCcccccCCCCCCChHHHHHHHHH
Q 024049 87 THYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAA--SRLETKQIGGRVRGPSPLIHQWIEF 164 (273)
Q Consensus 87 ~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~~P~eG~~~~~d~~~I~k~--a~~~~~~~~~~~~~~~~~A~~FInf 164 (273)
.+...+|.+|++++++.|......+..++ .+.++....+.......+++.+. ..|++ .+.+|++-
T Consensus 142 ~~~~~al~~G~vDa~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~------------~~~~~~~a 208 (308)
T 2x26_A 142 ADARAAFQQGNVDAWAIWDPYYSAALLQG-GVRVLKDGTDLNQTGSFYLAARPYAEKNGA------------FIQGVLAT 208 (308)
T ss_dssp HHHHHHHHTTSSSEEEEETTHHHHHHHHS-SEEEEEESTTSCCCCEEEEEEHHHHHHTHH------------HHHHHHHH
T ss_pred HHHHHHHHcCCCCEEEecchhHHHHHhcC-CcEEEecCCCcCCcceEEEEcHHHHHHCHH------------HHHHHHHH
Confidence 46778999999999998876665554443 45554433333223334444432 23555 88888887
Q ss_pred Hhc
Q 024049 165 CLQ 167 (273)
Q Consensus 165 lls 167 (273)
+.+
T Consensus 209 l~~ 211 (308)
T 2x26_A 209 FSE 211 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 104
>1t5q_A Gastric inhibitory polypeptide; GIP, molecular modelling, helix, diabetes, obesity, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=34.54 E-value=19 Score=20.74 Aligned_cols=11 Identities=9% Similarity=0.359 Sum_probs=10.0
Q ss_pred HHHHHHHHHhc
Q 024049 157 LIHQWIEFCLQ 167 (273)
Q Consensus 157 ~A~~FInflls 167 (273)
+|++||+|++.
T Consensus 18 ~ak~fv~wLl~ 28 (30)
T 1t5q_A 18 HQQDFVNWLLA 28 (30)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 79999999986
No 105
>4got_A Methionine-binding lipoprotein METQ; NLPA lipoprotein, PF03180 family, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.95A {Bacillus subtilis subsp}
Probab=33.69 E-value=31 Score=29.82 Aligned_cols=78 Identities=10% Similarity=-0.008 Sum_probs=51.9
Q ss_pred chhHHHHhhcCcEEEEEeccccHHHHHhcCCC-cE--EEecCCCceeeeeeEEEecCCCCcccccCCCCCCChHHHHHHH
Q 024049 86 STHYLKAFGIGDVWVAVGWSSDVLPAVKRMSN-VA--VVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWI 162 (273)
Q Consensus 86 ~~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~-v~--~~~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FI 162 (273)
..+....+.++++++++.+...+..+ |.+ .. +.+-.....-|+..+++.++-++.+ ..++|+
T Consensus 160 aaql~r~l~d~~vD~avin~n~a~~a---gl~p~~dal~~E~~~~~py~Nvivvr~~d~d~~------------~ik~lv 224 (249)
T 4got_A 160 PELTAKAYENKEGDAVFINVNYAIQN---KLNPKKDAIEVESTKNNPYANIIAVRKGEEDSA------------KIKALM 224 (249)
T ss_dssp TTTHHHHHHTTCSSEEEECHHHHHHT---TCCHHHHCSEECCSTTCCCCEEEEEETTCTTSH------------HHHHHH
T ss_pred HhHhhhhcccccccEEEechhHHHHc---CCChhhhhhcccCCCCCceEEEEEEcccccCCH------------HHHHHH
Confidence 45667888888888888876655443 322 11 1221112234677788887766655 899999
Q ss_pred HHHhcHHHhchhhhhh
Q 024049 163 EFCLQTARALPFKQEV 178 (273)
Q Consensus 163 nfllspe~q~~~~~~~ 178 (273)
+-+-|+|++.-+.+.+
T Consensus 225 ~a~~s~evk~~I~~~y 240 (249)
T 4got_A 225 EVLHSKKIKDFIEKKY 240 (249)
T ss_dssp HHHTSHHHHHHHHHHT
T ss_pred HHHCCHHHHHHHHHHc
Confidence 9999999999886544
No 106
>2l63_A GLP-2, glucagon-like peptide 2; hormone, GPCR, docking, small bowel syndrome; NMR {Homo sapiens} PDB: 2l64_A
Probab=32.81 E-value=22 Score=20.94 Aligned_cols=12 Identities=25% Similarity=0.504 Sum_probs=10.8
Q ss_pred HHHHHHHHHhcH
Q 024049 157 LIHQWIEFCLQT 168 (273)
Q Consensus 157 ~A~~FInfllsp 168 (273)
+|++||+++++.
T Consensus 18 aak~fl~wL~~~ 29 (33)
T 2l63_A 18 AARDFINWLIQT 29 (33)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHcC
Confidence 799999999974
No 107
>1xs5_A 29 kDa protein, membrane lipoprotein TPN32; periplasmic binding protein, methionine, membrane protein; 1.85A {Treponema pallidum} SCOP: c.94.1.1
Probab=32.19 E-value=57 Score=27.54 Aligned_cols=74 Identities=12% Similarity=0.069 Sum_probs=46.5
Q ss_pred chhHHHHhhcCcEEEEEeccccHHHHHhcCCCc---EEEecCCCceeeeeeEEEecCCCCcccccCCCCCCChHHHHHHH
Q 024049 86 STHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNV---AVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWI 162 (273)
Q Consensus 86 ~~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v---~~~~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FI 162 (273)
..+...+| |++++++.|...+..+ |.+. .+.+-..+. .+...+++.++-.|++ ..++|+
T Consensus 155 ~~~~~~al--~~VDaa~i~~~~a~~a---gl~~~~~~l~~e~~~~-~~~nviv~r~~~~~~~------------~vk~l~ 216 (241)
T 1xs5_A 155 SALLPRVF--DQVDGAVINGNYAIMA---GLSARRDGLAVEPDAS-AYANVLVVKRGNEADA------------RVQAVL 216 (241)
T ss_dssp GGGHHHHG--GGSSEEEECHHHHHHT---TCCTTTTCSEECSCGG-GGCEEEEEETTCTTCH------------HHHHHH
T ss_pred HHHHHHhh--hccCEEEECcHHHHHc---CCCcccceEEEcCCCC-ceEEEEEEECCccChH------------HHHHHH
Confidence 34566666 6898988887544332 3221 122222222 3455566666656655 899999
Q ss_pred HHHhcHHHhchhhhh
Q 024049 163 EFCLQTARALPFKQE 177 (273)
Q Consensus 163 nfllspe~q~~~~~~ 177 (273)
+-+.|+|+..-+.+.
T Consensus 217 ~a~~s~~v~~~i~~~ 231 (241)
T 1xs5_A 217 RALCGGRVRTYLKER 231 (241)
T ss_dssp HHHTSHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHh
Confidence 999999999887643
No 108
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=30.50 E-value=95 Score=25.81 Aligned_cols=53 Identities=11% Similarity=0.011 Sum_probs=32.7
Q ss_pred hhHHHHhhcCcEEEEEeccccHHHHHhcCC--CcEEEecCCCceeeeeeEEEecC
Q 024049 87 THYLKAFGIGDVWVAVGWSSDVLPAVKRMS--NVAVVVPKSGASLWADLWAIPAA 139 (273)
Q Consensus 87 ~~~~~~~~~Gev~va~~~s~~~~~~~~~~~--~v~~~~P~eG~~~~~d~~~I~k~ 139 (273)
.+...++.+|++++++.+...+....++.+ ++.++-...-.......++++++
T Consensus 193 ~~~~~~l~~g~vDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~k~ 247 (283)
T 2yln_A 193 AQSLTLIEQKRADATLNDELAVLDYLKKNPNAGVKIVWSAPADEKVGSGLIVNKG 247 (283)
T ss_dssp HHHHHHHHTTSCCEEEEEHHHHHHHHHHSTTSSEEEEEECCGGGCEEECCEEESS
T ss_pred HHHHHHHHcCCCCEEEecHHHHHHHHHhCCCCcEEEccCcccCCcccEEEEEeCC
Confidence 467889999999999988766655444433 25554301111123446788887
No 109
>1ixh_A Phosphate-binding protein; phosphate transport, ultra high resolution, phosphate bindin protein; 0.98A {Escherichia coli} SCOP: c.94.1.1 PDB: 2abh_A 1a54_A* 1a55_A 1ixi_A 1quk_A 1ixg_A 1oib_A 1pbp_A 1qul_A 1qui_A 1quj_A 1a40_A 2z22_X
Probab=29.67 E-value=37 Score=29.68 Aligned_cols=24 Identities=8% Similarity=0.200 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhcHHHhchhhhhhcCCC
Q 024049 156 PLIHQWIEFCLQTARALPFKQEVIPGA 182 (273)
Q Consensus 156 ~~A~~FInfllspe~q~~~~~~~~~~~ 182 (273)
+.+++|++|+++ +.|..+. + .||.
T Consensus 271 ~~~~~Fl~~~~s-~gq~~~~-~-~Gy~ 294 (321)
T 1ixh_A 271 TEVLKFFDWAYK-TGAKQAN-D-LDYA 294 (321)
T ss_dssp HHHHHHHHHHHH-HCHHHHH-H-TTCE
T ss_pred HHHHHHHHHHHh-hhHHHHH-h-CCCe
Confidence 379999999999 8887664 3 4664
No 110
>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} SCOP: c.94.1.1
Probab=29.51 E-value=45 Score=29.08 Aligned_cols=78 Identities=14% Similarity=0.111 Sum_probs=46.5
Q ss_pred hhHHHHhhcCcEEEEEeccccHHHHHhc-CCCcEEEe-cCCC-ceeeeeeEEEecCCCCcccccCCCCCCChHHHHHHHH
Q 024049 87 THYLKAFGIGDVWVAVGWSSDVLPAVKR-MSNVAVVV-PKSG-ASLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIE 163 (273)
Q Consensus 87 ~~~~~~~~~Gev~va~~~s~~~~~~~~~-~~~v~~~~-P~eG-~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FIn 163 (273)
.+...+| |++++++.|...+..+... +...-+.- +++. ..-+++.+++.++..|++ ..++|++
T Consensus 192 ~~~~~al--~~VDaa~i~~~~a~~ag~~~~~~~i~~e~~~~~~~~~~~n~ivvr~~~~~~~------------~vk~l~~ 257 (295)
T 1p99_A 192 QQTARAL--SDVDIAVINNGVATKAGKDPKNDPIFLEKSNSDAVKPYINIVAVNDKDLDNK------------TYAKIVE 257 (295)
T ss_dssp GGTTGGG--GTSSEEEECHHHHHHTTCCTTTSCSEECCCSSGGGGGGEEEEEEEGGGTTCH------------HHHHHHH
T ss_pred HHHHHHh--hcCCEEEECcHHHHHcCCCcccceEEecCCcccCCCceeEEEEEeCCccChH------------HHHHHHH
Confidence 3455556 6888888876443332111 00122222 3220 223566677777656655 8999999
Q ss_pred HHhcHHHhchhhhhh
Q 024049 164 FCLQTARALPFKQEV 178 (273)
Q Consensus 164 fllspe~q~~~~~~~ 178 (273)
-+.|+|++.-+.+.+
T Consensus 258 a~~s~ev~~~i~~~~ 272 (295)
T 1p99_A 258 LYHSKEAQKALQEDV 272 (295)
T ss_dssp HHHSHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHhc
Confidence 999999998886543
No 111
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=29.45 E-value=55 Score=28.00 Aligned_cols=68 Identities=13% Similarity=0.093 Sum_probs=42.8
Q ss_pred hhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEEecCCCceeeeeeEEEecC--CCCcccccCCCCCCChHHHHHHHHH
Q 024049 87 THYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAA--SRLETKQIGGRVRGPSPLIHQWIEF 164 (273)
Q Consensus 87 ~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~~P~eG~~~~~d~~~I~k~--a~~~~~~~~~~~~~~~~~A~~FInf 164 (273)
.+...+|.+|++++++.|......+..++ ...+++...+.....+++++.+. ..|++ ...+|+.-
T Consensus 168 ~~~~~al~~G~vDa~~~~~p~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~------------~~~~~~~a 234 (324)
T 3ksx_A 168 ANARAAFAAGQVDAWAIWDPWYSALTLDG-SARLLANGEGLGLTGGFFLSSRRYATAWGP------------FVQQVMGT 234 (324)
T ss_dssp HHHHHHHHTTCCSEEEEETTHHHHHHHTT-SEEEEEESTTSCCCCEEEEEEHHHHHHTHH------------HHHHHHHH
T ss_pred HHHHHHHHcCCCCEEEEccHHHHHHHhcC-CcEEEecccccCCCccEEEECHHHHHHCHH------------HHHHHHHH
Confidence 56788999999999999877666555443 34444433333333445555443 23555 78888886
Q ss_pred Hhc
Q 024049 165 CLQ 167 (273)
Q Consensus 165 lls 167 (273)
+..
T Consensus 235 ~~~ 237 (324)
T 3ksx_A 235 LNQ 237 (324)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 112
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=29.33 E-value=77 Score=25.47 Aligned_cols=53 Identities=9% Similarity=-0.079 Sum_probs=34.2
Q ss_pred hhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEEe-cCCCceeeeeeEEEecC
Q 024049 87 THYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVV-PKSGASLWADLWAIPAA 139 (273)
Q Consensus 87 ~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~~-P~eG~~~~~d~~~I~k~ 139 (273)
.+..+++.+|++++++.+...+.....+++.+.... +........-+++++++
T Consensus 181 ~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (269)
T 4i62_A 181 GNLITDLKSGQVDAVIFEEPVAKGFVENNPDLAIADLNFEKEQDDSYAVAMKKD 234 (269)
T ss_dssp HHHHHHHHTTSSSEEEEEHHHHHHHHHHCTTEEECSCCCCC-CCCEECCEEESS
T ss_pred HHHHHHHHcCCCCEEEeChHHHHHHHHhCCCCeEEeeccCCCcccceEEEEeCC
Confidence 467899999999999998777766666665555542 21211122336677776
No 113
>1jrj_A Exendin-4; Trp-CAGE, GLP-1, poly-proii, hydrophobic cluster, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=29.13 E-value=27 Score=21.37 Aligned_cols=12 Identities=17% Similarity=0.326 Sum_probs=10.9
Q ss_pred HHHHHHHHHhcH
Q 024049 157 LIHQWIEFCLQT 168 (273)
Q Consensus 157 ~A~~FInfllsp 168 (273)
+|++||++|++.
T Consensus 18 aak~fv~wL~~~ 29 (39)
T 1jrj_A 18 AVRLFIEWLKNG 29 (39)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHcC
Confidence 799999999984
No 114
>2g49_C Glucagon preproprotein; protein-peptide complex, hydrolase; 2.50A {Homo sapiens} PDB: 1kx6_A 1gcn_A 1bh0_A 1nau_A
Probab=29.07 E-value=27 Score=19.93 Aligned_cols=11 Identities=0% Similarity=0.398 Sum_probs=9.8
Q ss_pred HHHHHHHHHhc
Q 024049 157 LIHQWIEFCLQ 167 (273)
Q Consensus 157 ~A~~FInflls 167 (273)
+|++|++++++
T Consensus 18 aak~fv~wL~~ 28 (29)
T 2g49_C 18 RAQDFVQWLMN 28 (29)
T ss_pred HHHHHHHHHhc
Confidence 79999999986
No 115
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=28.68 E-value=93 Score=24.76 Aligned_cols=51 Identities=10% Similarity=-0.076 Sum_probs=30.9
Q ss_pred hhHHHHhhcCcEEEEEeccccHHHHHhcCC--CcEEEecCCCceeeeeeEEEecC
Q 024049 87 THYLKAFGIGDVWVAVGWSSDVLPAVKRMS--NVAVVVPKSGASLWADLWAIPAA 139 (273)
Q Consensus 87 ~~~~~~~~~Gev~va~~~s~~~~~~~~~~~--~v~~~~P~eG~~~~~d~~~I~k~ 139 (273)
.+..+++.+|++++++.+...+.....+.. .+.. ++..-. ...-+++++++
T Consensus 146 ~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~k~ 198 (245)
T 3k4u_A 146 AEAVQEVLNGKADMFIFDLPFNVAFMAQKGQGYLVH-LDTSLT-YEPLGWAIKKG 198 (245)
T ss_dssp HHHHHHHHSSSSEEEEEEHHHHHHHHHHTTTTTEEE-ECCCCS-CEEECCEECTT
T ss_pred HHHHHHHHcCCCcEEEEcHHHHHHHHhcCCccceee-cCCCcc-cccEEEEEcCC
Confidence 467899999999999987666555433332 2332 332211 22335777776
No 116
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=28.13 E-value=1e+02 Score=25.59 Aligned_cols=51 Identities=16% Similarity=-0.003 Sum_probs=33.1
Q ss_pred hhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEEecCCCceeeee-eEEEecC
Q 024049 87 THYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWAD-LWAIPAA 139 (273)
Q Consensus 87 ~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~~P~eG~~~~~d-~~~I~k~ 139 (273)
.+..+++.+|++++++.+...+.....+.+.+.++-+.... ... ++++.++
T Consensus 195 ~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~k~ 246 (291)
T 2yjp_A 195 TETFDALKDGRGVALAHDNALLWAWAKENPNFEVAIGNLGP--AEFIAPAVQKG 246 (291)
T ss_dssp HHHHHHHHTTSSSEEEEEHHHHHHHHHHCTTEEEEECCSSS--CEEECCEEETT
T ss_pred HHHHHHHHcCCccEEEecHHHHHHHHHhCCCeEEcCCcccC--CcceEEEEeCC
Confidence 46789999999999998877666665555555554322111 112 5677776
No 117
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=28.02 E-value=1.7e+02 Score=23.69 Aligned_cols=53 Identities=13% Similarity=-0.055 Sum_probs=33.1
Q ss_pred hhHHHHhhcCcEEEEEeccccHHHHHhcCCC--cEEEecCCCceeeeeeEEEecC
Q 024049 87 THYLKAFGIGDVWVAVGWSSDVLPAVKRMSN--VAVVVPKSGASLWADLWAIPAA 139 (273)
Q Consensus 87 ~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~--v~~~~P~eG~~~~~d~~~I~k~ 139 (273)
.+..+++.+|++++++.....+....++... +.++-+........-.++++++
T Consensus 179 ~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~k~ 233 (272)
T 2pvu_A 179 VVAIMELLNGGVDAVITDNAVANEYVKNNPNKKLQVIEDPKNFASEYYGMIFPKN 233 (272)
T ss_dssp HHHHHHHHTTSCSEEEEEHHHHHHHHHHCGGGCEEEECCTTTSCCEEECCEEETT
T ss_pred HHHHHHHHcCCccEEEeCHHHHHHHHHhCCCCceEEeccccccCCceEEEEEeCC
Confidence 4678999999999999877666555544432 4443221111223446788888
No 118
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=27.83 E-value=59 Score=27.64 Aligned_cols=68 Identities=12% Similarity=0.068 Sum_probs=43.6
Q ss_pred hhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEEecCC---------CceeeeeeEEEecC--CCCcccccCCCCCCCh
Q 024049 87 THYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKS---------GASLWADLWAIPAA--SRLETKQIGGRVRGPS 155 (273)
Q Consensus 87 ~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~~P~e---------G~~~~~d~~~I~k~--a~~~~~~~~~~~~~~~ 155 (273)
.+...+|.+|++++++.|......+..++ ...++.... |...-...+++.++ ..|++
T Consensus 177 ~~~~~al~~G~vDa~~~~~p~~~~~~~~g-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~----------- 244 (346)
T 3qsl_A 177 AGAVTALRSGQIDAISNTDPVVSMLETSG-DIQIIVDTRTLKDTKEIFGGNMPAGCLYAPQAFVDANPN----------- 244 (346)
T ss_dssp HHHHHHHHHTSCSEEEEETTHHHHHHHTT-CEEEEEECSSHHHHHHHHSSCCCCEEEEEEHHHHHHCHH-----------
T ss_pred HHHHHHHHcCCccEEEecchhHHHHHhCC-CeEEEEecccccchhhhcCCCCceEEEEECHHHHHHCHH-----------
Confidence 46789999999999999887776666665 444443211 22222334555544 23666
Q ss_pred HHHHHHHHHHhc
Q 024049 156 PLIHQWIEFCLQ 167 (273)
Q Consensus 156 ~~A~~FInflls 167 (273)
...+|++-+..
T Consensus 245 -~~~~~~~a~~~ 255 (346)
T 3qsl_A 245 -TAQALTNAIVR 255 (346)
T ss_dssp -HHHHHHHHHHH
T ss_pred -HHHHHHHHHHH
Confidence 88999986554
No 119
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=27.76 E-value=99 Score=24.76 Aligned_cols=53 Identities=13% Similarity=-0.018 Sum_probs=35.3
Q ss_pred hhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEEecC-CCce-eeeeeEEEecC
Q 024049 87 THYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPK-SGAS-LWADLWAIPAA 139 (273)
Q Consensus 87 ~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~~P~-eG~~-~~~d~~~I~k~ 139 (273)
.+..+++.+|++++++.+...+....++.+.+.++-+. .... ...-+++++++
T Consensus 169 ~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 223 (268)
T 3qax_A 169 LEVIMEVRYGKSPVAVLEPSVGRVVLKDFPNLVATRLELPPECWVLGCGLGVAKD 223 (268)
T ss_dssp HHHHHHHHTTSSSEEEECHHHHHHHGGGCTTEEEEEEECCGGGCBCCEEEEECTT
T ss_pred HHHHHHHHcCCCCEEEecHHHHHHHHHhCCCcEEecCccCcccccccEEEEEeCC
Confidence 46789999999999999888777777776666554221 1111 11136778876
No 120
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=27.50 E-value=1.4e+02 Score=23.21 Aligned_cols=51 Identities=14% Similarity=0.051 Sum_probs=30.2
Q ss_pred hhHHHHhhcCcEEEEEeccccHHHHHhcC--CCcEEEecCCCceeeeeeEEEecC
Q 024049 87 THYLKAFGIGDVWVAVGWSSDVLPAVKRM--SNVAVVVPKSGASLWADLWAIPAA 139 (273)
Q Consensus 87 ~~~~~~~~~Gev~va~~~s~~~~~~~~~~--~~v~~~~P~eG~~~~~d~~~I~k~ 139 (273)
.+..+++.+|++++++.+...+....++. ..+..+-+. .....-++++.++
T Consensus 148 ~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 200 (234)
T 3h7m_A 148 ADALRLLAAGGCDYAVVAMVPGMYIIRENRLTNLVPVARS--IAAQRYGYAVRQG 200 (234)
T ss_dssp HHHHHHHHTTSSSEEEEEHHHHHHHHHHTTCTTEEEEEEE--EEEEEEEEEEETT
T ss_pred HHHHHHHHcCCceEEEeccHHHHHHHHhcCCCceEEeccc--cCCCceEEEEeCC
Confidence 46789999999999988766655544433 234433211 1112235677766
No 121
>3iol_B Glucagon; receptor-ligand complex, cell membrane, disulfide bond, G-PR coupled receptor, glycoprotein, membrane, receptor, transdu transmembrane; HET: 10M; 2.10A {Homo sapiens} PDB: 1d0r_A
Probab=27.40 E-value=35 Score=19.67 Aligned_cols=12 Identities=8% Similarity=0.365 Sum_probs=10.4
Q ss_pred HHHHHHHHHHhc
Q 024049 156 PLIHQWIEFCLQ 167 (273)
Q Consensus 156 ~~A~~FInflls 167 (273)
++|+.|++||++
T Consensus 17 ~~ak~Fv~wL~~ 28 (31)
T 3iol_B 17 QAAKEFIAWLVK 28 (31)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHc
Confidence 489999999986
No 122
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=27.26 E-value=1e+02 Score=24.28 Aligned_cols=53 Identities=13% Similarity=-0.025 Sum_probs=35.1
Q ss_pred hhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEEe-cCCCce-eeeeeEEEecC
Q 024049 87 THYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVV-PKSGAS-LWADLWAIPAA 139 (273)
Q Consensus 87 ~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~~-P~eG~~-~~~d~~~I~k~ 139 (273)
.+..+++.+|++++++.+...+....++++.+.++- |-.... ...-+++++++
T Consensus 148 ~~~~~~L~~g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 202 (242)
T 3del_B 148 LEVLMEVMHGKSPVAVLEPSIAQVVLKDFPALSTATIDLPEDQWVLGYGIGVASD 202 (242)
T ss_dssp HHHHHHHHTTSSSEEEECHHHHHHHGGGCTTEEEEEEECCGGGCEEEEEEEEETT
T ss_pred HHHHHHHHcCCCCEEEecHHHHHHHHHhCCCeEEecCccCcccccceEEEEEeCC
Confidence 467899999999999998777777766666665542 211111 11136788887
No 123
>2b4n_A Gastric inhibitory polypeptide; GIP, molecular modelling, helix, diabetes, obesity, hormone/growth factor complex; NMR {Homo sapiens} PDB: 2l70_A 2l71_A 2obu_A 2qkh_B*
Probab=25.59 E-value=36 Score=21.13 Aligned_cols=14 Identities=7% Similarity=0.211 Sum_probs=11.8
Q ss_pred HHHHHHHHHHhcHH
Q 024049 156 PLIHQWIEFCLQTA 169 (273)
Q Consensus 156 ~~A~~FInfllspe 169 (273)
.+|+.||+||++..
T Consensus 17 ~~akdFv~WL~~~k 30 (42)
T 2b4n_A 17 IHQQDFVNWLLAQK 30 (42)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCC
Confidence 38999999999853
No 124
>4esw_A Pyrimidine biosynthesis enzyme THI13; thiamin pyrimidine biosynthesis, transferase; HET: CIT; 1.60A {Candida albicans} PDB: 4esx_A*
Probab=24.49 E-value=49 Score=28.78 Aligned_cols=39 Identities=18% Similarity=0.084 Sum_probs=31.8
Q ss_pred cccc-hhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEE
Q 024049 83 LFDS-THYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV 121 (273)
Q Consensus 83 ~~~~-~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~ 121 (273)
.+.+ .+..+++.+|++++|++....+..++.+|.++..+
T Consensus 44 ~~~~~~~~~~al~sG~~D~g~~~~~~~~~a~~~G~~v~~v 83 (342)
T 4esw_A 44 EPSNPSDVTELVGSGKVDMGLKAMVGTLAAKARGFPVTSI 83 (342)
T ss_dssp EESSGGGHHHHHHHTSSSEEEEEHHHHHHHHHTTCCEEEE
T ss_pred eCCChHHHHHHHHcCCcCEEEecHHHHHHHHHCCCCeEEE
Confidence 3443 46789999999999999888888888889888765
No 125
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=24.41 E-value=1.6e+02 Score=25.53 Aligned_cols=56 Identities=13% Similarity=0.123 Sum_probs=33.1
Q ss_pred hhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEEec--CCCceeeeeeEEEecCCCC
Q 024049 87 THYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVP--KSGASLWADLWAIPAASRL 142 (273)
Q Consensus 87 ~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~~P--~eG~~~~~d~~~I~k~a~~ 142 (273)
++....|.+|++++++.-......+..+..-.-|..| ..|.......+++.++++-
T Consensus 57 ~~~i~aL~~G~vDia~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~y~~~lvv~~ds~i 114 (321)
T 3p7i_A 57 AGIIQGMRFNKVDIAWYGNLSAMEAVDRANGQVFAQTVAADGSPGYWSVLIVNKDSPI 114 (321)
T ss_dssp HHHHHHHHTTSCSEEECCHHHHHHHHHHSCEEEEEEEEETTCCSSBCEEEEEETTCSC
T ss_pred HHHHHHHHcCCCcEEEEChHHHHHHHHhcCCEEEEEEeccCCCcceEEEEEEECCCCC
Confidence 4678999999999987544444444433221223333 3455444456777887653
No 126
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A*
Probab=24.04 E-value=2e+02 Score=23.85 Aligned_cols=55 Identities=9% Similarity=-0.118 Sum_probs=32.8
Q ss_pred hhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEE--Ee-cCCCceeeeeeEEEecCCCC
Q 024049 87 THYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAV--VV-PKSGASLWADLWAIPAASRL 142 (273)
Q Consensus 87 ~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~--~~-P~eG~~~~~d~~~I~k~a~~ 142 (273)
.+..+++.+|++++.+.....+....++.+...+ +- +.. .....-+++++++++-
T Consensus 196 ~~~l~~l~~G~vDa~i~d~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~a~~k~~~l 253 (284)
T 2a5s_A 196 EDALVSLKTGKLDAFIYDAAVLNYKAGRDEGCKLVTIGSGYI-FATTGYGIALQKGSPW 253 (284)
T ss_dssp HHHHHHHHTTSCSEEEEEHHHHHHHHHTCTTSCEEEEECCCG-GGCEEECCEEETTCTT
T ss_pred HHHHHHHHcCCeeEEEEchHHHHHHHhcCCCCCEEEeCCccc-cccCceEEEecCCCHH
Confidence 4788999999999888766555555554433333 31 111 1112236788998643
No 127
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=23.07 E-value=3e+02 Score=22.19 Aligned_cols=56 Identities=11% Similarity=-0.055 Sum_probs=34.6
Q ss_pred cccc-hhHHHHhhcCcEEEEEeccccHHHHHhc--CCCcEEEecCCCceeeeeeEEEecC
Q 024049 83 LFDS-THYLKAFGIGDVWVAVGWSSDVLPAVKR--MSNVAVVVPKSGASLWADLWAIPAA 139 (273)
Q Consensus 83 ~~~~-~~~~~~~~~Gev~va~~~s~~~~~~~~~--~~~v~~~~P~eG~~~~~d~~~I~k~ 139 (273)
.+.+ .+..+++.+|++++++.....+....++ ..++.+.-+.... -..-+++++++
T Consensus 165 ~~~~~~~~l~~L~~GrvDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~k~ 223 (267)
T 3mpk_A 165 TADNPSEAMLMVANGQADAVVQTQISASYYVNRYFAGKLRIASALDLP-PAEIALATTRG 223 (267)
T ss_dssp EESSHHHHHHHHHHTSCSEEEEEHHHHHHHHHHHCTTTEEEEEECSSC-CEEEEEEEETT
T ss_pred EeCCHHHHHHHHHcCCCCEEEecHHHHHHHHHhcCCCceEEEeccCCC-ceeEEEEEcCC
Confidence 3443 4678999999999999876665444443 3456665332221 22336788877
No 128
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=22.67 E-value=1.2e+02 Score=23.44 Aligned_cols=51 Identities=12% Similarity=0.033 Sum_probs=31.4
Q ss_pred hhHHHHhhcCcEEEEEeccccHHHHHhcCC--CcEEEecCCCceeeeeeEEEecC
Q 024049 87 THYLKAFGIGDVWVAVGWSSDVLPAVKRMS--NVAVVVPKSGASLWADLWAIPAA 139 (273)
Q Consensus 87 ~~~~~~~~~Gev~va~~~s~~~~~~~~~~~--~v~~~~P~eG~~~~~d~~~I~k~ 139 (273)
.+...++.+|++++++.+...+....++.. .+.++-+. .....-+++++++
T Consensus 140 ~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~k~ 192 (226)
T 1wdn_A 140 DNAYMELGTNRADAVLHDTPNILYFIKTAGNGQFKAVGDS--LEAQQYGIAFPKG 192 (226)
T ss_dssp HHHHHHHHTTSCSEEEEEHHHHHHHHHTTTTTTEEEEEEE--EEEEEEEEEECTT
T ss_pred HHHHHHHHcCCcCEEEeCcHHHHHHHHhCCCCceEEecCC--cccCceEEEEeCC
Confidence 467899999999999987766655555443 45443211 1112335677776
No 129
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=22.63 E-value=1.3e+02 Score=23.14 Aligned_cols=53 Identities=13% Similarity=-0.009 Sum_probs=32.8
Q ss_pred hhHHHHhhcCcEEEEEeccccHHHHHhcCCC--cEEEec-CCCce--eeeeeEEEecC
Q 024049 87 THYLKAFGIGDVWVAVGWSSDVLPAVKRMSN--VAVVVP-KSGAS--LWADLWAIPAA 139 (273)
Q Consensus 87 ~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~--v~~~~P-~eG~~--~~~d~~~I~k~ 139 (273)
.+..+++.+|++++++.+...+....++... +.++-+ -.... .+.-+++++++
T Consensus 141 ~~~~~~l~~grvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (227)
T 3tql_A 141 EDALMDLTSGRVDAVVGDTPLIKQWLKQNGRREYVLIGKPVNDPNYFGKGVGIAVKKG 198 (227)
T ss_dssp HHHHHHHTTTSSSEEESCHHHHHHHHHHTTCCSEEEEEEECCCGGGCCSCBCCEEETT
T ss_pred HHHHHHHHcCCcCEEEeChHHHHHHHHhCCCCCEEEecCcccCccccccceEEEEcCC
Confidence 4688999999999999887766555544432 555421 11111 12235777876
No 130
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=22.31 E-value=1.3e+02 Score=23.27 Aligned_cols=35 Identities=9% Similarity=-0.002 Sum_probs=26.1
Q ss_pred hhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEE
Q 024049 87 THYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV 121 (273)
Q Consensus 87 ~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~ 121 (273)
.+..+++.+|++++++.+...+....++..++.++
T Consensus 143 ~~~~~~l~~grvDa~~~~~~~~~~~~~~~~~~~~~ 177 (229)
T 2y7i_A 143 LNAFTDLKNNRLEGVFGDVAAIGKWLKNNPDYAIM 177 (229)
T ss_dssp HHHHHHHHTTSCSEEEEEHHHHHHHHTTCTTEEEC
T ss_pred HHHHHHHHcCCcCEEEechHHHHHHHHhCCCeEEe
Confidence 46789999999999998877666655555456554
No 131
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis}
Probab=22.14 E-value=3.7e+02 Score=22.99 Aligned_cols=78 Identities=15% Similarity=0.204 Sum_probs=41.7
Q ss_pred hhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEE----------ecC-----C-C-----ceeeeeeEEEecCCCCccc
Q 024049 87 THYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV----------VPK-----S-G-----ASLWADLWAIPAASRLETK 145 (273)
Q Consensus 87 ~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~----------~P~-----e-G-----~~~~~d~~~I~k~a~~~~~ 145 (273)
.+...++.+|++++++...+.+....+.| +++.. +|+ | | ...| .++++|++.+..-
T Consensus 166 ~~a~~al~~G~vD~~~~~~~~~~~~i~~g-~lr~Lav~~~~r~~~~pdvPt~~e~G~~~~~~~~w-~gl~ap~g~p~~v- 242 (301)
T 2qpq_A 166 GPALNDVLGSQIGLAVVTASSAIPFIKAG-KLQALAVTSKERSALLPEVPTVAEQGVAGYELNQW-HGLLVPGATPMAV- 242 (301)
T ss_dssp HHHHHHHHTTSSSCEEEEHHHHHHHHHTT-SEEEEEECSSSCCTTCTTSCBSGGGTCTTCCCEEE-EEEEEETTCCHHH-
T ss_pred HHHHHHHHCCCccEEEEcHHHHHHHHhcC-CeEEEEEcCCccccccCCCCChHHhCCCceEEEeE-EEEEecCCCCHHH-
Confidence 35667777777777766555554544444 33321 111 1 2 1223 4677888866321
Q ss_pred ccCCCCCCChHHHHHHHHHHhcHHHhchhh
Q 024049 146 QIGGRVRGPSPLIHQWIEFCLQTARALPFK 175 (273)
Q Consensus 146 ~~~~~~~~~~~~A~~FInfllspe~q~~~~ 175 (273)
.......+.+-+-+|+.+..+.
T Consensus 243 --------v~~l~~al~~~~~~~~~~~~~~ 264 (301)
T 2qpq_A 243 --------RQKLYDGIAKVMQRDDVQKKLA 264 (301)
T ss_dssp --------HHHHHHHHHHHHTCHHHHHHHH
T ss_pred --------HHHHHHHHHHHHcCHHHHHHHH
Confidence 0014445555566688887775
No 132
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=21.44 E-value=1.2e+02 Score=26.18 Aligned_cols=37 Identities=16% Similarity=0.129 Sum_probs=28.6
Q ss_pred hhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEEec
Q 024049 87 THYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVP 123 (273)
Q Consensus 87 ~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~~P 123 (273)
.+..+++.+|++++++........++.+|.++.++..
T Consensus 93 ~~~~~al~~G~~D~~~~~~~~~~~~~~~g~~~~~v~~ 129 (341)
T 3un6_A 93 PDLMDALNSGRIDGASTLIELAMKSKQKGSNIKAVAL 129 (341)
T ss_dssp HHHHHHHHTTSSSEEEEEHHHHHHHHHTTCCCEEEEE
T ss_pred HHHHHHHHcCCCCEEecchHHHHHHHHCCCCeEEEee
Confidence 4678999999999998776666666677888776644
No 133
>2czl_A Hypothetical protein TTHA1568; conserved hypothetical protein, extremely thermoph bacteria, structural genomics, NPPSFA; HET: CME TLA XPE; 1.55A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 2dbp_A* 3a3u_A*
Probab=21.42 E-value=90 Score=25.77 Aligned_cols=69 Identities=14% Similarity=-0.008 Sum_probs=42.5
Q ss_pred hhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEEec-----CCCceeeeeeEEEecCCCCcccccCCCCCCChHHHHHH
Q 024049 87 THYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVP-----KSGASLWADLWAIPAASRLETKQIGGRVRGPSPLIHQW 161 (273)
Q Consensus 87 ~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~~P-----~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~F 161 (273)
.+...+|.+|+++.++.|..........|..+-+-+. ..|...-.+.+++.++- +++ ...+|
T Consensus 127 ~~~~~al~~G~vDa~~~~~ep~~~~~~~g~~~~~d~~~~w~~~~g~~~~~~~~~~~~~~-~p~------------~v~~~ 193 (272)
T 2czl_A 127 DRILPMVAQGEVEAGLIIHESRFTYPRYGLVQVVDLGAWWEERTGLPLPLGAILARRDL-GEG------------LIRAL 193 (272)
T ss_dssp GGHHHHHHTTSSSEEEECTTHHHHGGGGTCEEEEEHHHHHHHHHSSCEEEEEEEEEGGG-CHH------------HHHHH
T ss_pred HHHHHHHHCCCCCEEEEecchhhhhhhcCCccHHHHHHHHHHhcCCCCCcchhhccccc-CHH------------HHHHH
Confidence 4678899999999999984444444444432211111 01334445566766665 566 88999
Q ss_pred HHHHhcH
Q 024049 162 IEFCLQT 168 (273)
Q Consensus 162 Infllsp 168 (273)
++-+.+.
T Consensus 194 ~~a~~~a 200 (272)
T 2czl_A 194 DEAVRRS 200 (272)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9877763
No 134
>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A
Probab=21.27 E-value=3.1e+02 Score=21.70 Aligned_cols=57 Identities=9% Similarity=-0.157 Sum_probs=29.1
Q ss_pred cccc-hhHHHHhhcCcEEEEEeccccHHHHHhcCC--CcEEEecCCCceeeeeeEEEecCCCC
Q 024049 83 LFDS-THYLKAFGIGDVWVAVGWSSDVLPAVKRMS--NVAVVVPKSGASLWADLWAIPAASRL 142 (273)
Q Consensus 83 ~~~~-~~~~~~~~~Gev~va~~~s~~~~~~~~~~~--~v~~~~P~eG~~~~~d~~~I~k~a~~ 142 (273)
.+.+ .+..+++.+|++ +.+.....+.....+.. ++..+-+. .....-+++++++++-
T Consensus 173 ~~~~~~~~~~~l~~G~~-a~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~k~~~l 232 (265)
T 2v3u_A 173 NVLESQAGIQKVKYGNY-AFVWDAAVLEYVAINDPDCSFYTVGNT--VADRGYGIALQHGSPY 232 (265)
T ss_dssp CBSSHHHHHHHHHHSSC-EEEEEHHHHHHHHHHCTTCCEEEEC-----CCEEECCEEETTCTT
T ss_pred ccCCHHHHHHHHHcCCE-EEEEcchHHHHHHhcCCCccEEEeccc--cCCcceEEEEeCCCcc
Confidence 3443 577899999999 54443332333333332 34443211 1112336788988653
No 135
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A
Probab=20.61 E-value=1.7e+02 Score=24.34 Aligned_cols=55 Identities=5% Similarity=-0.134 Sum_probs=32.1
Q ss_pred hhHHHHhhc--CcEEEEEeccccHHHHHhcCCCcEEEecCCCceeeeeeEEEecCCC
Q 024049 87 THYLKAFGI--GDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASR 141 (273)
Q Consensus 87 ~~~~~~~~~--Gev~va~~~s~~~~~~~~~~~~v~~~~P~eG~~~~~d~~~I~k~a~ 141 (273)
.+..+++.+ |++++.+.....+.....+.....+.+-.+-.....-+++++++++
T Consensus 205 ~~~~~~l~~~~GrvDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ia~~k~~~ 261 (294)
T 2rc8_A 205 PDGVQYLKNDPEKLDAFIMDKALLDYEVSIDADCKLLTVGKPFAIEGYGIGLPPNSP 261 (294)
T ss_dssp HHHHHHHHSSSCCCSEEEEEHHHHHHHHHTCSSSCEEECSCCEEEEEECCEECTTCT
T ss_pred HHHHHHHHhccCceeEEEecHHHHHHHHhhCCCCCEEEcCCcccccceEEEecCCCH
Confidence 467889999 9999988876655555544333333322111112223578888754
No 136
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=20.38 E-value=92 Score=26.86 Aligned_cols=70 Identities=3% Similarity=-0.185 Sum_probs=41.7
Q ss_pred chhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEEecCCCceeee-eeEEEecC--CCCcccccCCCCCCChHHHHHHH
Q 024049 86 STHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWA-DLWAIPAA--SRLETKQIGGRVRGPSPLIHQWI 162 (273)
Q Consensus 86 ~~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~~P~eG~~~~~-d~~~I~k~--a~~~~~~~~~~~~~~~~~A~~FI 162 (273)
..+...+|.+|++++++.|......+..++....+..+.+-..... +.+++.++ ..|++ ...+|+
T Consensus 191 ~~~~~~al~~G~vDa~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~------------~v~~~~ 258 (341)
T 3un6_A 191 PAEMPAALSEHRITGYSVAEPFGALGEKLGKGKTLKHGDDVIPDAYCCVLVLRGELLDQHKD------------VAQAFV 258 (341)
T ss_dssp GGGHHHHHHTTSCSEEEEETTHHHHHHHSSCCEEEEEGGGTSTTCCCEEEEECHHHHHHCHH------------HHHHHH
T ss_pred hHHHHHHHHcCCCCEEEecCCHHHHHHhcCCeEEEEeccccCCCCceEEEEECHHHHHHCHH------------HHHHHH
Confidence 3567789999999999998877666666554322222222111112 33444433 23665 888898
Q ss_pred HHHhc
Q 024049 163 EFCLQ 167 (273)
Q Consensus 163 nflls 167 (273)
+-+..
T Consensus 259 ~a~~~ 263 (341)
T 3un6_A 259 QDYKK 263 (341)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87765
No 137
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=20.20 E-value=1.4e+02 Score=25.71 Aligned_cols=56 Identities=18% Similarity=0.144 Sum_probs=33.6
Q ss_pred hhHHHHhhcCcEEEEEeccccHHHHHhcCCCcEEEec--CCCceeeeeeEEEecCCCC
Q 024049 87 THYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVP--KSGASLWADLWAIPAASRL 142 (273)
Q Consensus 87 ~~~~~~~~~Gev~va~~~s~~~~~~~~~~~~v~~~~P--~eG~~~~~d~~~I~k~a~~ 142 (273)
++....+.+|++++++.-......+..+..-.-|..| ..|.......++++++++-
T Consensus 47 ~~~i~al~~G~vDi~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~~lvv~~ds~i 104 (310)
T 3n5l_A 47 AGIIQGMRFDKVDIAWYGNKAAMEAVDRAHGEIFAQTVAASGAPGYWSLLIANKDSKI 104 (310)
T ss_dssp HHHHHHHHTTSCSEEECCHHHHHHHHHHSCEEEEEEEEETTCCSEEEEEEEEETTCSC
T ss_pred HHHHHHHHcCCCCEEEECcHHHHHHHHhcCCeEEEEEeccCCCcceEEEEEEECCCCC
Confidence 5688999999999987554444444433321223333 3455545556777877653
Done!