Query 024050
Match_columns 273
No_of_seqs 174 out of 1726
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 08:34:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024050.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024050hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0667 Tas Predicted oxidored 100.0 3.5E-64 7.5E-69 442.6 25.4 263 8-273 1-278 (316)
2 KOG1575 Voltage-gated shaker-l 100.0 2.6E-62 5.6E-67 423.4 23.5 268 3-273 7-294 (336)
3 TIGR01293 Kv_beta voltage-depe 100.0 8.1E-58 1.8E-62 404.5 25.2 258 10-273 1-285 (317)
4 PRK10625 tas putative aldo-ket 100.0 4.4E-57 9.6E-62 404.4 25.2 262 8-273 1-308 (346)
5 PRK09912 L-glyceraldehyde 3-ph 100.0 7.3E-57 1.6E-61 402.5 25.1 262 7-273 12-301 (346)
6 PLN02587 L-galactose dehydroge 100.0 6.6E-56 1.4E-60 392.0 25.1 255 10-273 1-265 (314)
7 COG0656 ARA1 Aldo/keto reducta 100.0 5.9E-55 1.3E-59 371.0 20.9 221 8-268 3-230 (280)
8 cd06660 Aldo_ket_red Aldo-keto 100.0 3.8E-54 8.3E-59 375.9 25.4 252 10-273 1-256 (285)
9 PRK10376 putative oxidoreducta 100.0 8.1E-52 1.7E-56 361.8 25.2 247 5-273 4-257 (290)
10 PF00248 Aldo_ket_red: Aldo/ke 100.0 2.5E-52 5.3E-57 364.2 19.9 245 22-273 1-252 (283)
11 PRK14863 bifunctional regulato 100.0 6.8E-52 1.5E-56 361.9 20.1 240 17-273 2-251 (292)
12 PRK11172 dkgB 2,5-diketo-D-glu 100.0 9.6E-50 2.1E-54 344.8 22.9 214 18-273 1-221 (267)
13 KOG1576 Predicted oxidoreducta 100.0 5.9E-50 1.3E-54 329.7 19.2 262 7-273 21-290 (342)
14 KOG1577 Aldo/keto reductase fa 100.0 6.9E-50 1.5E-54 340.1 19.6 222 10-268 6-251 (300)
15 PRK11565 dkgA 2,5-diketo-D-glu 100.0 5.2E-48 1.1E-52 335.1 22.1 220 11-273 7-231 (275)
16 COG4989 Predicted oxidoreducta 100.0 2.1E-48 4.5E-53 318.2 16.5 253 8-273 1-262 (298)
17 COG1453 Predicted oxidoreducta 100.0 1.8E-47 3.9E-52 328.8 20.6 241 8-273 1-251 (391)
18 KOG3023 Glutamate-cysteine lig 98.2 4.4E-06 9.6E-11 69.1 6.4 71 140-211 155-227 (285)
19 cd03319 L-Ala-DL-Glu_epimerase 95.0 0.91 2E-05 40.2 13.6 155 39-216 134-291 (316)
20 cd03316 MR_like Mandelate race 92.5 2.8 6.1E-05 37.6 12.4 154 39-212 139-299 (357)
21 COG0635 HemN Coproporphyrinoge 90.9 1.7 3.7E-05 40.1 9.1 109 20-166 148-276 (416)
22 PRK08392 hypothetical protein; 90.0 7.8 0.00017 32.2 11.7 149 41-209 14-179 (215)
23 cd03315 MLE_like Muconate lact 88.8 14 0.00031 31.6 14.6 157 39-216 85-243 (265)
24 PRK10550 tRNA-dihydrouridine s 88.5 16 0.00034 32.4 13.0 132 39-183 73-223 (312)
25 cd03174 DRE_TIM_metallolyase D 88.4 4.7 0.0001 34.4 9.5 105 105-211 16-135 (265)
26 TIGR02370 pyl_corrinoid methyl 86.9 11 0.00025 30.8 10.5 149 39-205 10-164 (197)
27 cd03323 D-glucarate_dehydratas 85.6 29 0.00063 31.8 14.2 150 39-213 168-321 (395)
28 PRK13958 N-(5'-phosphoribosyl) 85.0 4.2 9E-05 33.8 7.0 67 117-185 16-83 (207)
29 cd07943 DRE_TIM_HOA 4-hydroxy- 84.5 25 0.00054 30.1 14.9 25 37-61 18-42 (263)
30 cd03322 rpsA The starvation se 84.4 27 0.00058 31.5 12.6 146 39-212 126-273 (361)
31 COG1748 LYS9 Saccharopine dehy 83.5 6.3 0.00014 36.0 8.0 83 39-137 77-159 (389)
32 cd02070 corrinoid_protein_B12- 83.5 23 0.00051 29.0 11.9 149 39-205 9-162 (201)
33 PF00682 HMGL-like: HMGL-like 83.4 13 0.00029 31.1 9.7 162 38-215 11-194 (237)
34 COG1140 NarY Nitrate reductase 83.0 0.5 1.1E-05 42.3 0.8 55 152-206 262-317 (513)
35 cd04740 DHOD_1B_like Dihydroor 82.6 32 0.0007 29.9 12.9 151 39-205 100-286 (296)
36 PF07021 MetW: Methionine bios 82.5 6.2 0.00013 32.3 6.8 102 114-217 64-172 (193)
37 PRK08609 hypothetical protein; 82.4 33 0.00072 33.2 12.9 149 43-208 351-522 (570)
38 cd00740 MeTr MeTr subgroup of 81.3 30 0.00066 29.6 11.1 106 105-216 23-131 (252)
39 cd03318 MLE Muconate Lactonizi 81.0 27 0.00059 31.5 11.3 156 40-216 143-302 (365)
40 cd00739 DHPS DHPS subgroup of 79.9 15 0.00032 31.6 8.7 101 105-211 21-127 (257)
41 cd00308 enolase_like Enolase-s 79.8 11 0.00024 31.5 7.9 87 126-216 120-208 (229)
42 PRK01222 N-(5'-phosphoribosyl) 79.7 6.6 0.00014 32.6 6.4 67 118-186 19-86 (210)
43 TIGR02534 mucon_cyclo muconate 79.7 36 0.00079 30.7 11.7 88 126-217 213-302 (368)
44 PRK08195 4-hyroxy-2-oxovalerat 79.4 47 0.001 29.8 16.0 25 37-61 21-45 (337)
45 PRK00164 moaA molybdenum cofac 78.8 47 0.001 29.4 13.7 154 37-209 48-228 (331)
46 PRK07379 coproporphyrinogen II 78.7 13 0.00027 34.2 8.4 59 106-166 180-255 (400)
47 cd04731 HisF The cyclase subun 78.2 35 0.00075 28.8 10.5 84 116-202 156-242 (243)
48 PRK06294 coproporphyrinogen II 78.0 13 0.00029 33.6 8.3 60 105-166 167-243 (370)
49 TIGR03822 AblA_like_2 lysine-2 77.5 51 0.0011 29.2 12.3 122 38-173 119-251 (321)
50 TIGR03217 4OH_2_O_val_ald 4-hy 77.4 54 0.0012 29.4 16.1 25 37-61 20-44 (333)
51 TIGR01928 menC_lowGC/arch o-su 77.1 53 0.0011 29.1 14.6 154 39-217 132-287 (324)
52 COG2069 CdhD CO dehydrogenase/ 77.0 32 0.0007 30.2 9.6 95 115-214 157-261 (403)
53 COG0135 TrpF Phosphoribosylant 76.7 20 0.00043 29.8 8.2 81 119-208 19-102 (208)
54 PRK09058 coproporphyrinogen II 76.7 13 0.00028 34.7 8.0 28 105-133 227-254 (449)
55 cd03325 D-galactonate_dehydrat 76.6 57 0.0012 29.3 13.6 153 39-211 123-285 (352)
56 PRK05660 HemN family oxidoredu 76.3 17 0.00038 33.0 8.6 60 105-166 171-243 (378)
57 PRK08446 coproporphyrinogen II 75.2 31 0.00067 31.0 9.8 60 105-166 162-231 (350)
58 PRK13796 GTPase YqeH; Provisio 74.9 65 0.0014 29.2 12.1 120 37-168 53-175 (365)
59 cd00423 Pterin_binding Pterin 74.8 28 0.00061 29.8 9.1 104 105-214 21-130 (258)
60 TIGR00676 fadh2 5,10-methylene 74.1 58 0.0012 28.1 11.3 154 41-218 15-193 (272)
61 cd03321 mandelate_racemase Man 73.5 53 0.0012 29.5 10.9 152 39-210 141-294 (355)
62 TIGR01496 DHPS dihydropteroate 72.6 61 0.0013 27.8 10.6 99 105-211 20-125 (257)
63 TIGR02026 BchE magnesium-proto 71.8 39 0.00084 32.0 10.0 152 38-205 222-392 (497)
64 cd07944 DRE_TIM_HOA_like 4-hyd 71.2 55 0.0012 28.2 10.1 104 104-210 16-128 (266)
65 cd07943 DRE_TIM_HOA 4-hydroxy- 71.0 44 0.00095 28.6 9.4 105 104-210 18-131 (263)
66 PF03102 NeuB: NeuB family; I 71.0 21 0.00046 30.4 7.3 110 38-167 53-183 (241)
67 PRK05692 hydroxymethylglutaryl 70.8 8.8 0.00019 33.6 5.1 103 105-210 23-139 (287)
68 PRK07259 dihydroorotate dehydr 69.8 76 0.0016 27.7 11.4 153 39-205 102-289 (301)
69 TIGR00735 hisF imidazoleglycer 69.7 51 0.0011 28.1 9.5 91 114-207 160-253 (254)
70 PLN02363 phosphoribosylanthran 69.4 18 0.0004 31.0 6.6 73 107-185 57-130 (256)
71 TIGR01502 B_methylAsp_ase meth 69.2 29 0.00062 32.1 8.2 87 126-213 264-357 (408)
72 PRK05628 coproporphyrinogen II 69.2 36 0.00078 30.8 8.9 59 105-166 172-248 (375)
73 PRK13347 coproporphyrinogen II 69.2 25 0.00053 32.9 8.0 60 105-166 216-291 (453)
74 PRK07945 hypothetical protein; 68.6 88 0.0019 28.0 15.5 106 40-161 110-227 (335)
75 cd02930 DCR_FMN 2,4-dienoyl-Co 68.3 91 0.002 28.0 13.1 25 38-62 127-158 (353)
76 PRK00730 rnpA ribonuclease P; 67.8 33 0.00072 26.5 7.1 63 81-153 46-110 (138)
77 PRK08208 coproporphyrinogen II 67.6 31 0.00068 32.0 8.3 60 105-166 205-275 (430)
78 PRK14017 galactonate dehydrata 67.2 99 0.0022 28.1 13.3 154 39-212 124-287 (382)
79 PLN02746 hydroxymethylglutaryl 66.7 14 0.0003 33.3 5.5 97 110-211 69-182 (347)
80 COG4464 CapC Capsular polysacc 66.5 29 0.00063 29.0 6.8 41 38-78 17-60 (254)
81 PRK05414 urocanate hydratase; 65.7 20 0.00042 33.8 6.3 115 47-175 118-254 (556)
82 TIGR01228 hutU urocanate hydra 65.7 19 0.00041 33.8 6.1 115 47-175 109-245 (545)
83 cd00405 PRAI Phosphoribosylant 65.3 61 0.0013 26.4 8.9 41 125-169 73-113 (203)
84 TIGR00190 thiC thiamine biosyn 64.9 45 0.00098 30.5 8.3 143 39-208 75-220 (423)
85 cd03327 MR_like_2 Mandelate ra 64.6 1.1E+02 0.0023 27.4 12.6 152 39-211 120-280 (341)
86 PF13378 MR_MLE_C: Enolase C-t 64.4 11 0.00023 27.5 3.8 54 162-216 3-57 (111)
87 cd03314 MAL Methylaspartate am 64.3 53 0.0011 29.9 8.8 85 128-212 229-320 (369)
88 cd03174 DRE_TIM_metallolyase D 64.0 89 0.0019 26.4 13.6 27 38-64 16-42 (265)
89 COG3172 NadR Predicted ATPase/ 63.9 41 0.00089 27.0 6.9 98 53-154 79-185 (187)
90 TIGR00538 hemN oxygen-independ 63.7 36 0.00079 31.7 8.0 60 105-166 215-290 (455)
91 PRK04452 acetyl-CoA decarbonyl 63.5 94 0.002 27.7 10.0 94 116-214 83-185 (319)
92 PRK05799 coproporphyrinogen II 63.1 58 0.0013 29.4 9.0 27 105-132 163-189 (374)
93 COG1801 Uncharacterized conser 62.9 97 0.0021 26.8 9.8 79 51-137 33-115 (263)
94 KOG0259 Tyrosine aminotransfer 62.5 1.3E+02 0.0028 27.7 11.6 49 38-91 78-135 (447)
95 PRK13803 bifunctional phosphor 62.2 52 0.0011 32.1 8.9 68 119-186 20-88 (610)
96 COG4943 Predicted signal trans 62.1 35 0.00076 32.0 7.2 121 71-210 342-477 (524)
97 PRK08599 coproporphyrinogen II 61.9 49 0.0011 30.0 8.3 60 105-166 164-240 (377)
98 PRK06582 coproporphyrinogen II 60.4 52 0.0011 30.1 8.2 60 105-166 174-250 (390)
99 PRK15072 bifunctional D-altron 60.3 59 0.0013 29.8 8.6 83 126-212 232-316 (404)
100 PRK13352 thiamine biosynthesis 60.2 62 0.0013 29.8 8.3 144 39-209 75-224 (431)
101 PRK08195 4-hyroxy-2-oxovalerat 59.5 1.1E+02 0.0025 27.3 10.1 103 103-210 20-134 (337)
102 PF01175 Urocanase: Urocanase; 59.3 22 0.00048 33.4 5.5 126 45-184 106-256 (546)
103 PF14871 GHL6: Hypothetical gl 59.3 19 0.0004 27.6 4.3 25 190-214 43-67 (132)
104 PF00682 HMGL-like: HMGL-like 58.6 50 0.0011 27.6 7.3 97 105-207 11-124 (237)
105 COG2089 SpsE Sialic acid synth 58.5 1.4E+02 0.003 26.7 10.9 116 38-172 87-222 (347)
106 PRK09427 bifunctional indole-3 58.2 33 0.00072 32.1 6.6 66 118-187 273-339 (454)
107 cd03317 NAAAR N-acylamino acid 58.1 1.4E+02 0.003 26.7 13.8 150 41-216 139-291 (354)
108 PRK14461 ribosomal RNA large s 57.5 1.1E+02 0.0024 27.8 9.6 90 128-217 231-354 (371)
109 PRK02083 imidazole glycerol ph 57.5 1.2E+02 0.0026 25.7 10.7 86 119-207 163-251 (253)
110 cd07937 DRE_TIM_PC_TC_5S Pyruv 57.5 1.3E+02 0.0028 26.1 15.5 26 37-62 17-42 (275)
111 cd02069 methionine_synthase_B1 56.7 1.1E+02 0.0025 25.3 11.0 149 39-205 13-168 (213)
112 PRK05588 histidinol-phosphatas 56.5 61 0.0013 27.5 7.6 105 40-160 15-143 (255)
113 TIGR03217 4OH_2_O_val_ald 4-hy 56.4 1.5E+02 0.0032 26.5 10.4 105 103-210 19-133 (333)
114 PRK09061 D-glutamate deacylase 56.0 89 0.0019 29.7 9.2 113 42-162 170-283 (509)
115 PRK07535 methyltetrahydrofolat 55.2 1.4E+02 0.003 25.7 10.5 100 106-212 23-124 (261)
116 PLN02540 methylenetetrahydrofo 53.9 2.2E+02 0.0047 27.6 12.5 152 40-207 14-198 (565)
117 PRK08776 cystathionine gamma-s 53.9 1.8E+02 0.0039 26.7 11.1 86 127-216 100-187 (405)
118 PF07302 AroM: AroM protein; 53.3 1.4E+02 0.003 25.1 12.5 164 38-214 10-188 (221)
119 TIGR00126 deoC deoxyribose-pho 53.0 77 0.0017 26.3 7.3 72 39-125 130-205 (211)
120 PRK06740 histidinol-phosphatas 51.9 1.8E+02 0.0038 26.0 12.3 49 112-161 156-221 (331)
121 PRK09249 coproporphyrinogen II 51.9 73 0.0016 29.7 7.9 60 105-166 215-290 (453)
122 PRK05283 deoxyribose-phosphate 51.4 1.3E+02 0.0027 26.0 8.5 78 39-127 144-227 (257)
123 cd07948 DRE_TIM_HCS Saccharomy 51.4 1.6E+02 0.0034 25.3 14.2 25 38-62 19-43 (262)
124 TIGR01927 menC_gamma/gm+ o-suc 51.4 1.2E+02 0.0026 26.7 8.8 73 145-217 196-270 (307)
125 cd07944 DRE_TIM_HOA_like 4-hyd 51.1 1.6E+02 0.0035 25.3 15.4 177 37-220 16-224 (266)
126 cd03324 rTSbeta_L-fuconate_deh 50.9 2.1E+02 0.0045 26.5 12.3 152 39-211 196-352 (415)
127 TIGR00677 fadh2_euk methylenet 50.5 1.7E+02 0.0037 25.4 11.5 159 40-219 15-198 (281)
128 TIGR00381 cdhD CO dehydrogenas 50.5 2E+02 0.0044 26.3 10.6 105 107-218 127-254 (389)
129 COG1121 ZnuC ABC-type Mn/Zn tr 50.0 69 0.0015 27.5 6.7 65 105-172 112-205 (254)
130 PF03851 UvdE: UV-endonuclease 49.9 1.7E+02 0.0038 25.4 9.3 100 40-147 44-166 (275)
131 TIGR03822 AblA_like_2 lysine-2 49.4 1.9E+02 0.0041 25.6 10.7 109 106-217 120-240 (321)
132 PLN02681 proline dehydrogenase 49.3 2.3E+02 0.005 26.6 10.9 161 42-214 221-412 (455)
133 PF09989 DUF2229: CoA enzyme a 48.9 47 0.001 27.8 5.5 33 178-210 186-218 (221)
134 COG2987 HutU Urocanate hydrata 48.5 46 0.001 31.0 5.6 102 66-181 147-261 (561)
135 cd02801 DUS_like_FMN Dihydrour 48.4 1.5E+02 0.0033 24.3 9.0 133 39-184 65-213 (231)
136 smart00642 Aamy Alpha-amylase 48.3 27 0.00059 27.8 3.8 20 194-213 73-92 (166)
137 cd02810 DHOD_DHPD_FMN Dihydroo 48.3 1.8E+02 0.0039 25.0 11.3 130 39-183 109-271 (289)
138 TIGR01290 nifB nitrogenase cof 48.2 2.2E+02 0.0047 26.6 10.3 111 103-216 58-199 (442)
139 PRK08123 histidinol-phosphatas 48.1 1E+02 0.0022 26.4 7.7 24 41-64 19-42 (270)
140 PRK10415 tRNA-dihydrouridine s 48.1 2E+02 0.0043 25.5 10.9 135 39-185 75-225 (321)
141 TIGR03247 glucar-dehydr glucar 48.0 2.4E+02 0.0051 26.4 13.1 156 39-212 180-337 (441)
142 TIGR00737 nifR3_yhdG putative 47.8 2E+02 0.0043 25.4 11.6 138 39-188 73-226 (319)
143 PRK13361 molybdenum cofactor b 47.5 2E+02 0.0044 25.4 15.0 120 37-175 44-178 (329)
144 COG2355 Zn-dependent dipeptida 47.4 1.2E+02 0.0025 27.0 7.8 107 41-163 149-260 (313)
145 PF13407 Peripla_BP_4: Peripla 46.8 81 0.0017 26.2 6.8 63 107-175 13-79 (257)
146 PRK12331 oxaloacetate decarbox 46.7 1.4E+02 0.003 28.0 8.7 103 105-209 23-141 (448)
147 cd03320 OSBS o-Succinylbenzoat 46.1 1.9E+02 0.0041 24.6 10.9 84 126-214 153-237 (263)
148 cd03329 MR_like_4 Mandelate ra 45.9 2.3E+02 0.0049 25.6 14.1 151 39-211 143-299 (368)
149 PRK14462 ribosomal RNA large s 45.8 2.3E+02 0.005 25.6 10.1 88 130-217 225-340 (356)
150 COG2256 MGS1 ATPase related to 45.6 1.7E+02 0.0038 27.0 8.7 103 45-166 37-143 (436)
151 PRK06015 keto-hydroxyglutarate 45.4 64 0.0014 26.7 5.6 59 143-209 42-102 (201)
152 PRK14459 ribosomal RNA large s 45.4 1.9E+02 0.0042 26.3 9.2 91 127-217 240-361 (373)
153 PRK09358 adenosine deaminase; 45.3 2.2E+02 0.0048 25.2 12.2 104 107-214 148-252 (340)
154 TIGR00035 asp_race aspartate r 45.0 1.2E+02 0.0026 25.3 7.5 63 105-168 14-88 (229)
155 PRK00077 eno enolase; Provisio 44.6 2.2E+02 0.0049 26.3 9.8 96 105-209 261-361 (425)
156 PRK12928 lipoyl synthase; Prov 44.3 1.6E+02 0.0035 25.8 8.3 76 139-215 186-282 (290)
157 PF05368 NmrA: NmrA-like famil 44.1 87 0.0019 25.8 6.5 86 124-217 21-107 (233)
158 PLN00191 enolase 43.4 1.5E+02 0.0033 27.8 8.4 98 105-211 295-395 (457)
159 PRK14463 ribosomal RNA large s 43.4 2.1E+02 0.0045 25.8 9.1 92 126-217 207-327 (349)
160 cd03326 MR_like_1 Mandelate ra 43.0 2.6E+02 0.0057 25.5 11.7 148 39-207 160-314 (385)
161 cd02803 OYE_like_FMN_family Ol 43.0 2.3E+02 0.005 24.8 12.7 40 144-183 270-310 (327)
162 cd06543 GH18_PF-ChiA-like PF-C 43.0 2.3E+02 0.005 24.8 13.4 184 22-217 71-266 (294)
163 cd07939 DRE_TIM_NifV Streptomy 42.7 2.1E+02 0.0046 24.3 13.6 176 38-220 17-223 (259)
164 cd02932 OYE_YqiM_FMN Old yello 42.5 2.5E+02 0.0053 25.0 12.4 94 82-183 219-319 (336)
165 PF00697 PRAI: N-(5'phosphorib 42.3 35 0.00076 27.9 3.7 67 117-187 14-81 (197)
166 COG0626 MetC Cystathionine bet 42.2 1.2E+02 0.0026 27.9 7.4 82 140-221 112-196 (396)
167 TIGR01182 eda Entner-Doudoroff 42.0 78 0.0017 26.2 5.7 86 107-209 19-106 (204)
168 smart00052 EAL Putative diguan 42.0 1.7E+02 0.0036 23.9 8.0 98 109-210 100-209 (241)
169 TIGR01060 eno phosphopyruvate 41.8 2.7E+02 0.0058 25.8 9.8 95 106-209 263-362 (425)
170 PRK14457 ribosomal RNA large s 41.8 2.6E+02 0.0057 25.1 12.8 93 82-175 100-202 (345)
171 TIGR03471 HpnJ hopanoid biosyn 41.7 2.4E+02 0.0053 26.3 9.7 92 113-207 288-394 (472)
172 cd07948 DRE_TIM_HCS Saccharomy 41.3 64 0.0014 27.7 5.3 100 104-211 18-132 (262)
173 PF01904 DUF72: Protein of unk 41.2 2.1E+02 0.0046 23.9 10.5 129 55-210 19-148 (230)
174 TIGR02080 O_succ_thio_ly O-suc 41.0 2.8E+02 0.006 25.2 11.1 86 127-216 91-178 (382)
175 COG2873 MET17 O-acetylhomoseri 40.9 2.9E+02 0.0063 25.4 12.8 70 40-133 63-134 (426)
176 COG2159 Predicted metal-depend 40.2 2.4E+02 0.0052 24.7 8.8 97 118-214 55-167 (293)
177 cd04734 OYE_like_3_FMN Old yel 40.1 2.8E+02 0.006 24.9 13.7 25 38-62 131-162 (343)
178 TIGR02660 nifV_homocitr homoci 40.0 2.8E+02 0.0062 25.0 9.6 91 111-208 25-130 (365)
179 PRK14465 ribosomal RNA large s 39.7 2.8E+02 0.0062 24.9 9.7 90 128-217 215-331 (342)
180 TIGR03820 lys_2_3_AblA lysine- 39.7 3E+02 0.0066 25.5 9.6 122 38-175 138-271 (417)
181 PRK02901 O-succinylbenzoate sy 39.6 2.7E+02 0.0059 24.8 9.2 71 144-216 173-244 (327)
182 PRK14465 ribosomal RNA large s 39.4 2.9E+02 0.0062 24.9 9.3 136 82-217 104-266 (342)
183 cd01297 D-aminoacylase D-amino 39.4 3E+02 0.0066 25.1 10.7 123 41-175 167-298 (415)
184 cd01974 Nitrogenase_MoFe_beta 39.3 3.2E+02 0.0069 25.3 10.7 111 59-182 62-192 (435)
185 PRK14041 oxaloacetate decarbox 39.3 1.7E+02 0.0037 27.6 8.1 101 105-210 22-141 (467)
186 PF00809 Pterin_bind: Pterin b 39.2 72 0.0016 26.3 5.2 89 119-213 29-125 (210)
187 PF01053 Cys_Met_Meta_PP: Cys/ 38.8 1.1E+02 0.0024 27.9 6.8 82 140-221 104-188 (386)
188 COG1751 Uncharacterized conser 38.6 1.1E+02 0.0025 24.1 5.6 72 39-123 12-84 (186)
189 COG2896 MoaA Molybdenum cofact 38.4 99 0.0021 27.6 6.1 119 38-175 43-175 (322)
190 cd07940 DRE_TIM_IPMS 2-isoprop 38.3 2.5E+02 0.0055 23.9 14.7 180 37-220 16-230 (268)
191 PRK04390 rnpA ribonuclease P; 38.0 1.7E+02 0.0037 21.8 7.2 64 80-152 43-109 (120)
192 cd00466 DHQase_II Dehydroquina 37.8 1.3E+02 0.0028 23.3 5.9 81 104-191 23-105 (140)
193 PLN02428 lipoic acid synthase 37.5 2.4E+02 0.0052 25.5 8.5 157 38-214 130-324 (349)
194 cd08570 GDPD_YPL206cp_fungi Gl 37.5 2.4E+02 0.0052 23.4 8.7 23 39-61 11-33 (234)
195 TIGR00048 radical SAM enzyme, 37.1 2.2E+02 0.0048 25.7 8.3 90 128-217 218-335 (355)
196 PRK08084 DNA replication initi 37.0 81 0.0018 26.4 5.2 45 125-169 97-145 (235)
197 PRK01222 N-(5'-phosphoribosyl) 37.0 2.2E+02 0.0047 23.5 7.7 48 106-164 65-112 (210)
198 PRK12928 lipoyl synthase; Prov 36.9 2.9E+02 0.0062 24.2 9.4 71 104-176 86-163 (290)
199 PRK14040 oxaloacetate decarbox 36.6 4.1E+02 0.009 25.9 16.5 23 38-60 24-46 (593)
200 COG0422 ThiC Thiamine biosynth 36.6 2.9E+02 0.0063 25.3 8.6 146 38-210 75-223 (432)
201 COG1168 MalY Bifunctional PLP- 36.4 3.4E+02 0.0074 24.8 12.9 148 39-220 39-207 (388)
202 cd07938 DRE_TIM_HMGL 3-hydroxy 36.4 1.6E+02 0.0034 25.5 7.0 95 110-209 21-132 (274)
203 PRK08247 cystathionine gamma-s 36.4 1.9E+02 0.0041 26.0 7.9 62 156-217 116-179 (366)
204 TIGR03820 lys_2_3_AblA lysine- 36.4 3.6E+02 0.0077 25.1 10.3 107 106-217 139-258 (417)
205 PF01081 Aldolase: KDPG and KH 36.1 69 0.0015 26.3 4.5 45 157-209 60-106 (196)
206 PRK09454 ugpQ cytoplasmic glyc 36.1 2.6E+02 0.0057 23.5 13.7 23 39-61 20-42 (249)
207 PRK14466 ribosomal RNA large s 35.8 1.9E+02 0.0041 26.1 7.5 101 82-186 102-214 (345)
208 PRK14466 ribosomal RNA large s 35.8 1.5E+02 0.0033 26.7 6.9 90 128-217 210-327 (345)
209 PRK15440 L-rhamnonate dehydrat 35.8 1.3E+02 0.0028 27.6 6.7 69 142-210 246-318 (394)
210 COG1523 PulA Type II secretory 35.7 23 0.00049 35.0 1.8 76 115-208 206-282 (697)
211 PF00762 Ferrochelatase: Ferro 35.6 1.2E+02 0.0025 27.0 6.2 90 107-214 206-298 (316)
212 cd01948 EAL EAL domain. This d 35.6 2.4E+02 0.0052 22.9 8.7 100 108-210 98-208 (240)
213 cd04728 ThiG Thiazole synthase 35.4 2.9E+02 0.0062 23.7 12.1 105 104-210 72-181 (248)
214 PRK05968 hypothetical protein; 35.3 1.9E+02 0.0042 26.2 7.8 50 165-214 137-187 (389)
215 TIGR01329 cysta_beta_ly_E cyst 35.3 2.2E+02 0.0047 25.8 8.1 61 156-216 111-173 (378)
216 KOG1549 Cysteine desulfurase N 35.3 2.5E+02 0.0054 26.1 8.2 68 143-210 144-217 (428)
217 cd04742 NPD_FabD 2-Nitropropan 35.3 1.5E+02 0.0032 27.6 6.9 89 117-212 6-103 (418)
218 PF01118 Semialdhyde_dh: Semia 34.9 42 0.0009 24.9 2.8 28 38-65 74-101 (121)
219 PRK13015 3-dehydroquinate dehy 34.8 2.2E+02 0.0048 22.2 7.0 81 104-191 25-107 (146)
220 PRK14455 ribosomal RNA large s 34.8 1.5E+02 0.0033 26.8 6.8 90 128-217 222-339 (356)
221 PLN02746 hydroxymethylglutaryl 34.7 3.5E+02 0.0075 24.4 13.9 173 36-214 63-276 (347)
222 PTZ00081 enolase; Provisional 34.7 3.5E+02 0.0077 25.3 9.4 97 105-210 281-382 (439)
223 TIGR02631 xylA_Arthro xylose i 34.6 3.1E+02 0.0066 25.1 8.9 41 21-61 7-52 (382)
224 PRK12581 oxaloacetate decarbox 34.4 4.1E+02 0.0088 25.1 14.5 112 39-165 103-215 (468)
225 PRK15108 biotin synthase; Prov 34.2 3.5E+02 0.0075 24.3 10.3 106 105-214 76-194 (345)
226 COG0502 BioB Biotin synthase a 34.0 3.4E+02 0.0074 24.4 8.8 133 38-190 84-233 (335)
227 PRK15108 biotin synthase; Prov 33.6 3.5E+02 0.0077 24.2 11.4 105 38-158 76-188 (345)
228 KOG0023 Alcohol dehydrogenase, 33.5 1E+02 0.0023 27.5 5.3 146 8-207 174-324 (360)
229 cd08583 PI-PLCc_GDPD_SF_unchar 33.4 2.8E+02 0.0061 23.0 9.2 23 39-61 13-35 (237)
230 PLN02775 Probable dihydrodipic 33.3 3E+02 0.0065 24.1 8.1 58 114-175 68-125 (286)
231 cd07937 DRE_TIM_PC_TC_5S Pyruv 33.1 2.3E+02 0.0049 24.5 7.5 100 105-209 18-136 (275)
232 TIGR02026 BchE magnesium-proto 32.9 2.8E+02 0.0061 26.2 8.6 47 105-154 222-268 (497)
233 PRK05904 coproporphyrinogen II 32.8 3.1E+02 0.0067 24.7 8.5 27 105-132 167-193 (353)
234 PRK05458 guanosine 5'-monophos 32.7 3.1E+02 0.0067 24.5 8.3 123 77-209 17-145 (326)
235 cd03313 enolase Enolase: Enola 32.5 4E+02 0.0087 24.5 10.1 96 105-209 261-361 (408)
236 PRK14461 ribosomal RNA large s 32.4 2.2E+02 0.0047 26.0 7.3 95 82-176 106-225 (371)
237 PRK14469 ribosomal RNA large s 32.3 3.7E+02 0.008 24.0 9.2 88 128-215 211-325 (343)
238 PRK15408 autoinducer 2-binding 32.2 3.6E+02 0.0078 23.9 12.0 80 80-175 21-104 (336)
239 PRK08255 salicylyl-CoA 5-hydro 32.1 5.4E+02 0.012 25.9 13.6 159 37-206 540-737 (765)
240 COG0820 Predicted Fe-S-cluster 32.0 2.9E+02 0.0062 25.0 7.9 88 129-217 216-332 (349)
241 COG3623 SgaU Putative L-xylulo 31.9 59 0.0013 27.6 3.4 76 15-92 65-156 (287)
242 PF07476 MAAL_C: Methylasparta 31.9 1E+02 0.0022 26.0 4.8 101 106-209 87-194 (248)
243 PRK14463 ribosomal RNA large s 31.9 3.8E+02 0.0083 24.1 9.1 91 82-175 102-204 (349)
244 PRK06552 keto-hydroxyglutarate 31.9 1.6E+02 0.0034 24.6 6.0 59 143-209 51-114 (213)
245 PRK10200 putative racemase; Pr 31.8 2.3E+02 0.0051 23.7 7.2 63 105-168 14-88 (230)
246 TIGR02090 LEU1_arch isopropylm 31.8 3.9E+02 0.0084 24.1 13.1 27 37-63 18-44 (363)
247 TIGR00238 KamA family protein. 31.7 3.7E+02 0.0081 23.9 11.6 103 40-155 144-251 (331)
248 cd00739 DHPS DHPS subgroup of 31.6 3.3E+02 0.0072 23.3 9.1 48 117-165 158-209 (257)
249 cd02742 GH20_hexosaminidase Be 31.6 62 0.0013 28.4 3.8 16 194-209 75-90 (303)
250 PF04476 DUF556: Protein of un 31.5 3.2E+02 0.007 23.2 9.4 150 39-207 9-183 (235)
251 PRK00507 deoxyribose-phosphate 31.5 1.5E+02 0.0033 24.8 5.9 41 38-78 133-174 (221)
252 COG1831 Predicted metal-depend 31.4 3.5E+02 0.0076 23.5 8.4 131 69-205 21-185 (285)
253 TIGR00126 deoC deoxyribose-pho 31.4 3.1E+02 0.0066 22.8 12.2 101 37-153 14-114 (211)
254 PLN02951 Molybderin biosynthes 31.3 3.7E+02 0.0079 24.4 8.8 132 38-189 90-240 (373)
255 COG2874 FlaH Predicted ATPases 31.2 3.2E+02 0.007 23.0 8.3 146 11-171 19-177 (235)
256 PRK14457 ribosomal RNA large s 31.1 3.9E+02 0.0086 24.0 16.5 167 37-217 128-332 (345)
257 PF01207 Dus: Dihydrouridine s 31.0 1.6E+02 0.0034 26.0 6.2 132 39-182 64-211 (309)
258 PRK05395 3-dehydroquinate dehy 30.8 2E+02 0.0043 22.5 5.9 100 104-220 25-126 (146)
259 COG0001 HemL Glutamate-1-semia 30.7 4.5E+02 0.0098 24.5 13.6 145 39-213 70-243 (432)
260 cd07945 DRE_TIM_CMS Leptospira 30.5 3.6E+02 0.0078 23.4 15.3 114 106-221 109-233 (280)
261 PF05913 DUF871: Bacterial pro 30.5 30 0.00066 31.3 1.6 163 39-221 12-185 (357)
262 TIGR00973 leuA_bact 2-isopropy 30.4 4.8E+02 0.01 24.8 13.3 182 37-221 19-235 (494)
263 cd02067 B12-binding B12 bindin 30.4 2.1E+02 0.0047 20.7 7.5 56 148-204 21-78 (119)
264 PRK06361 hypothetical protein; 30.4 3E+02 0.0065 22.4 15.1 155 41-214 10-171 (212)
265 TIGR01088 aroQ 3-dehydroquinat 30.2 2.4E+02 0.0053 21.9 6.3 81 104-191 23-105 (141)
266 PLN03228 methylthioalkylmalate 30.2 1.8E+02 0.0039 27.7 6.8 99 111-212 108-230 (503)
267 TIGR03699 mena_SCO4550 menaqui 30.1 3.8E+02 0.0083 23.7 8.7 106 38-156 72-196 (340)
268 cd07945 DRE_TIM_CMS Leptospira 30.0 1.5E+02 0.0032 25.8 5.8 98 104-210 15-134 (280)
269 PF01220 DHquinase_II: Dehydro 30.0 1.6E+02 0.0034 22.9 5.2 81 104-191 24-106 (140)
270 PRK03031 rnpA ribonuclease P; 29.9 2.4E+02 0.0051 21.1 6.8 64 81-153 47-114 (122)
271 PRK08248 O-acetylhomoserine am 29.9 2.9E+02 0.0062 25.6 8.0 55 160-214 133-189 (431)
272 PRK09536 btuD corrinoid ABC tr 29.9 1.5E+02 0.0033 27.3 6.1 74 143-216 279-352 (402)
273 TIGR02090 LEU1_arch isopropylm 29.8 4.2E+02 0.0091 23.9 9.3 96 105-208 19-129 (363)
274 PF01408 GFO_IDH_MocA: Oxidore 29.6 1.7E+02 0.0037 21.0 5.4 62 147-209 54-118 (120)
275 PF00155 Aminotran_1_2: Aminot 29.6 3E+02 0.0065 24.2 8.0 86 123-214 90-191 (363)
276 PRK07328 histidinol-phosphatas 29.6 3.6E+02 0.0077 23.0 15.8 107 42-162 19-161 (269)
277 TIGR03849 arch_ComA phosphosul 29.5 1.3E+02 0.0028 25.6 5.1 49 111-160 11-60 (237)
278 smart00148 PLCXc Phospholipase 29.3 1.4E+02 0.0031 22.7 5.0 49 44-92 31-97 (135)
279 PRK01313 rnpA ribonuclease P; 29.3 2.6E+02 0.0056 21.3 6.9 62 81-152 47-113 (129)
280 KOG2499 Beta-N-acetylhexosamin 29.2 62 0.0013 30.5 3.4 50 12-65 224-277 (542)
281 PRK12570 N-acetylmuramic acid- 29.2 3.9E+02 0.0085 23.4 9.3 58 113-173 115-172 (296)
282 PRK11858 aksA trans-homoaconit 29.1 4.4E+02 0.0096 23.9 12.7 25 38-62 23-47 (378)
283 PRK14456 ribosomal RNA large s 29.0 3.6E+02 0.0077 24.6 8.3 90 128-217 237-355 (368)
284 COG4992 ArgD Ornithine/acetylo 29.0 2.2E+02 0.0049 26.2 6.8 49 166-214 174-228 (404)
285 PRK10605 N-ethylmaleimide redu 28.9 4.4E+02 0.0095 23.8 14.6 25 37-61 148-179 (362)
286 PF01791 DeoC: DeoC/LacD famil 28.7 2.2E+02 0.0048 23.7 6.6 98 39-152 16-119 (236)
287 COG0135 TrpF Phosphoribosylant 28.6 68 0.0015 26.7 3.3 100 39-165 11-111 (208)
288 PHA02128 hypothetical protein 28.5 1.8E+02 0.0039 21.4 5.0 69 142-210 61-150 (151)
289 PRK10508 hypothetical protein; 28.2 99 0.0021 27.6 4.5 41 105-150 286-326 (333)
290 PRK14847 hypothetical protein; 28.2 1.9E+02 0.0042 25.9 6.3 98 111-214 56-180 (333)
291 cd00668 Ile_Leu_Val_MetRS_core 28.2 93 0.002 27.3 4.3 49 107-158 81-131 (312)
292 PRK07811 cystathionine gamma-s 28.1 4.6E+02 0.0099 23.8 10.0 99 113-216 88-188 (388)
293 PF02679 ComA: (2R)-phospho-3- 28.0 1E+02 0.0022 26.3 4.3 87 40-134 83-169 (244)
294 cd02933 OYE_like_FMN Old yello 27.9 4.4E+02 0.0095 23.5 14.0 38 37-79 141-185 (338)
295 PRK00208 thiG thiazole synthas 27.8 3.9E+02 0.0085 22.9 12.2 105 104-210 72-181 (250)
296 TIGR01428 HAD_type_II 2-haloal 27.8 1.5E+02 0.0032 23.7 5.2 64 110-175 61-128 (198)
297 TIGR02666 moaA molybdenum cofa 27.8 4.2E+02 0.0092 23.3 15.4 120 37-175 42-177 (334)
298 PF03599 CdhD: CO dehydrogenas 27.8 2.7E+02 0.0059 25.5 7.1 83 125-214 69-154 (386)
299 PRK04820 rnpA ribonuclease P; 27.7 2.9E+02 0.0064 21.4 7.1 64 81-153 48-114 (145)
300 TIGR03569 NeuB_NnaB N-acetylne 27.6 4.5E+02 0.0097 23.5 11.2 113 38-168 73-206 (329)
301 PF02801 Ketoacyl-synt_C: Beta 27.5 1E+02 0.0022 22.7 3.9 52 104-155 21-74 (119)
302 TIGR03597 GTPase_YqeH ribosome 27.5 4.6E+02 0.0099 23.6 9.5 119 38-168 48-169 (360)
303 cd08568 GDPD_TmGDE_like Glycer 27.5 2.1E+02 0.0046 23.6 6.2 22 39-60 12-33 (226)
304 PF14606 Lipase_GDSL_3: GDSL-l 27.4 2.7E+02 0.0057 22.6 6.4 109 17-135 33-146 (178)
305 COG1679 Predicted aconitase [G 27.3 4.9E+02 0.011 23.9 10.3 105 45-154 208-316 (403)
306 TIGR01278 DPOR_BchB light-inde 27.2 5.5E+02 0.012 24.4 10.5 101 69-183 69-194 (511)
307 PRK07810 O-succinylhomoserine 27.2 3.5E+02 0.0076 24.7 8.1 53 164-216 143-197 (403)
308 PRK13523 NADPH dehydrogenase N 27.2 4.6E+02 0.0099 23.5 10.9 27 37-63 131-164 (337)
309 cd07940 DRE_TIM_IPMS 2-isoprop 27.1 4E+02 0.0086 22.7 10.2 97 104-208 16-131 (268)
310 PRK12558 glutamyl-tRNA synthet 27.1 1.4E+02 0.0031 27.9 5.4 58 106-171 49-106 (445)
311 PRK06176 cystathionine gamma-s 27.1 3.8E+02 0.0082 24.3 8.2 50 165-214 123-174 (380)
312 cd01320 ADA Adenosine deaminas 27.1 4.2E+02 0.0092 23.1 12.6 99 107-209 140-239 (325)
313 TIGR02814 pfaD_fam PfaD family 27.0 2.5E+02 0.0055 26.3 7.0 66 146-212 35-108 (444)
314 COG2055 Malate/L-lactate dehyd 26.9 4.8E+02 0.01 23.6 8.7 87 104-209 5-113 (349)
315 COG0145 HyuA N-methylhydantoin 26.9 5.4E+02 0.012 25.6 9.6 101 37-139 135-246 (674)
316 PRK10558 alpha-dehydro-beta-de 26.8 1.6E+02 0.0035 25.2 5.4 67 147-214 10-79 (256)
317 cd07938 DRE_TIM_HMGL 3-hydroxy 26.7 4.2E+02 0.009 22.9 12.4 25 38-62 17-41 (274)
318 PRK10551 phage resistance prot 26.7 3.4E+02 0.0073 25.9 8.1 100 107-210 363-473 (518)
319 PF04481 DUF561: Protein of un 26.7 2.6E+02 0.0056 23.6 6.2 106 39-155 25-146 (242)
320 PRK14468 ribosomal RNA large s 26.7 4.7E+02 0.01 23.5 9.2 90 128-217 206-323 (343)
321 TIGR00742 yjbN tRNA dihydrouri 26.7 4.5E+02 0.0098 23.3 10.0 133 39-183 65-222 (318)
322 cd00405 PRAI Phosphoribosylant 26.6 2.3E+02 0.0049 23.0 6.1 64 120-186 17-82 (203)
323 COG2949 SanA Uncharacterized m 26.3 3.9E+02 0.0084 22.4 8.7 95 109-211 77-180 (235)
324 COG4626 Phage terminase-like p 26.3 2.9E+02 0.0062 26.6 7.3 74 138-214 410-486 (546)
325 TIGR03821 AblA_like_1 lysine-2 26.3 4.6E+02 0.01 23.2 9.6 75 143-217 161-246 (321)
326 PRK06256 biotin synthase; Vali 26.2 4.6E+02 0.0099 23.1 10.9 136 38-190 91-240 (336)
327 TIGR01660 narH nitrate reducta 26.2 28 0.0006 32.5 0.6 52 154-205 264-316 (492)
328 PLN02389 biotin synthase 26.1 5.1E+02 0.011 23.7 11.0 101 38-155 116-227 (379)
329 PLN02522 ATP citrate (pro-S)-l 25.9 1.3E+02 0.0027 29.5 5.0 29 67-95 234-262 (608)
330 PRK11613 folP dihydropteroate 25.8 4.5E+02 0.0097 22.9 9.0 99 106-211 36-140 (282)
331 PRK07671 cystathionine beta-ly 25.8 3.9E+02 0.0085 24.1 8.0 49 165-213 123-173 (377)
332 PRK09413 IS2 repressor TnpA; R 25.7 1.6E+02 0.0035 21.8 4.6 41 38-80 13-53 (121)
333 PRK07003 DNA polymerase III su 25.7 7.3E+02 0.016 25.3 12.3 94 107-206 101-197 (830)
334 PLN02509 cystathionine beta-ly 25.7 5E+02 0.011 24.4 8.8 55 164-218 205-261 (464)
335 cd00248 Mth938-like Mth938-lik 25.4 2.1E+02 0.0046 20.8 5.2 50 163-212 38-87 (109)
336 TIGR03821 AblA_like_1 lysine-2 25.4 4.8E+02 0.01 23.1 10.0 104 39-155 126-234 (321)
337 PF02679 ComA: (2R)-phospho-3- 25.3 54 0.0012 28.0 2.2 26 111-137 24-49 (244)
338 TIGR01108 oadA oxaloacetate de 25.2 61 0.0013 31.5 2.8 100 111-210 23-137 (582)
339 PRK02714 O-succinylbenzoate sy 25.1 4.8E+02 0.01 23.0 12.8 86 126-217 192-278 (320)
340 PF13552 DUF4127: Protein of u 25.0 6E+02 0.013 24.2 13.6 131 39-174 210-368 (497)
341 PF06506 PrpR_N: Propionate ca 24.9 60 0.0013 25.9 2.3 69 140-213 63-134 (176)
342 cd08590 PI-PLCc_Rv2075c_like C 24.8 2.5E+02 0.0054 24.2 6.2 19 46-64 46-64 (267)
343 PRK11267 biopolymer transport 24.8 1.8E+02 0.004 22.2 4.9 54 105-163 81-134 (141)
344 PF00101 RuBisCO_small: Ribulo 24.8 2.7E+02 0.0059 20.1 7.2 75 37-134 10-85 (99)
345 COG0710 AroD 3-dehydroquinate 24.7 4.3E+02 0.0093 22.3 14.3 87 39-130 12-100 (231)
346 TIGR00238 KamA family protein. 24.7 5E+02 0.011 23.1 11.3 76 143-219 178-265 (331)
347 PRK05939 hypothetical protein; 24.7 3.9E+02 0.0084 24.4 7.9 53 164-216 119-173 (397)
348 COG0218 Predicted GTPase [Gene 24.4 4.1E+02 0.0088 22.0 8.7 100 40-152 90-197 (200)
349 cd08620 PI-PLCXDc_like_1 Catal 24.4 3.1E+02 0.0068 23.9 6.8 18 47-64 36-53 (281)
350 PRK09389 (R)-citramalate synth 24.3 4E+02 0.0086 25.3 7.9 107 97-210 13-133 (488)
351 TIGR03278 methan_mark_10 putat 24.3 5.7E+02 0.012 23.6 10.6 69 105-174 54-126 (404)
352 KOG0369 Pyruvate carboxylase [ 24.3 3E+02 0.0064 27.5 6.9 146 40-217 42-197 (1176)
353 PF02525 Flavodoxin_2: Flavodo 24.2 2.6E+02 0.0057 22.4 6.1 102 40-151 94-196 (199)
354 PRK07503 methionine gamma-lyas 24.2 4.1E+02 0.009 24.2 8.0 53 164-216 138-192 (403)
355 cd01320 ADA Adenosine deaminas 23.9 4.9E+02 0.011 22.7 9.4 106 106-211 67-193 (325)
356 cd00814 MetRS_core catalytic c 23.8 1.1E+02 0.0024 27.0 4.0 47 107-156 68-114 (319)
357 PF01680 SOR_SNZ: SOR/SNZ fami 23.7 41 0.00089 27.2 1.1 19 116-134 87-105 (208)
358 TIGR01325 O_suc_HS_sulf O-succ 23.7 4.2E+02 0.009 23.9 7.8 50 165-214 128-179 (380)
359 KOG0173 20S proteasome, regula 23.5 73 0.0016 27.1 2.6 23 33-55 178-200 (271)
360 cd07939 DRE_TIM_NifV Streptomy 23.5 4.6E+02 0.0099 22.2 13.2 94 104-203 135-237 (259)
361 PRK14338 (dimethylallyl)adenos 23.5 6.1E+02 0.013 23.7 9.7 21 38-58 184-204 (459)
362 PRK03459 rnpA ribonuclease P; 23.5 3.2E+02 0.007 20.4 6.8 63 80-152 47-113 (122)
363 cd01989 STK_N The N-terminal d 23.5 3.1E+02 0.0068 20.3 6.2 27 192-218 91-117 (146)
364 TIGR02351 thiH thiazole biosyn 23.5 5.5E+02 0.012 23.1 9.2 100 38-155 103-215 (366)
365 PRK11858 aksA trans-homoaconit 23.4 5.6E+02 0.012 23.2 9.3 99 104-210 22-135 (378)
366 cd00959 DeoC 2-deoxyribose-5-p 23.4 4.1E+02 0.0088 21.6 9.3 100 38-153 14-113 (203)
367 cd03527 RuBisCO_small Ribulose 23.3 3E+02 0.0064 20.0 9.1 75 36-133 10-85 (99)
368 COG0159 TrpA Tryptophan syntha 23.3 4.9E+02 0.011 22.5 7.9 17 194-210 137-153 (265)
369 PRK04165 acetyl-CoA decarbonyl 23.2 6.3E+02 0.014 23.7 11.1 99 105-212 102-209 (450)
370 PRK07094 biotin synthase; Prov 23.2 5.1E+02 0.011 22.6 12.4 115 38-173 70-201 (323)
371 PRK00499 rnpA ribonuclease P; 23.2 3.1E+02 0.0066 20.1 6.8 64 80-153 37-104 (114)
372 PRK13870 transcriptional regul 23.2 4.5E+02 0.0097 22.0 7.4 26 106-131 17-42 (234)
373 PRK04820 rnpA ribonuclease P; 23.1 3.2E+02 0.0069 21.2 6.0 57 36-123 61-117 (145)
374 COG1902 NemA NADH:flavin oxido 23.1 5.7E+02 0.012 23.2 10.5 111 37-165 138-261 (363)
375 PRK08045 cystathionine gamma-s 23.0 5.7E+02 0.012 23.2 9.8 87 127-217 92-180 (386)
376 PRK11815 tRNA-dihydrouridine s 22.9 5.4E+02 0.012 22.9 8.6 133 39-183 75-232 (333)
377 cd03328 MR_like_3 Mandelate ra 22.8 5.5E+02 0.012 22.9 13.8 151 39-211 138-293 (352)
378 PRK08861 cystathionine gamma-s 22.7 5.9E+02 0.013 23.2 11.0 89 126-218 92-182 (388)
379 COG0646 MetH Methionine syntha 22.7 5.4E+02 0.012 22.8 10.3 173 39-214 51-256 (311)
380 PRK05718 keto-hydroxyglutarate 22.7 4.5E+02 0.0097 21.8 7.3 52 39-92 25-76 (212)
381 COG1131 CcmA ABC-type multidru 22.6 2.5E+02 0.0055 24.4 6.0 49 125-174 154-205 (293)
382 PF08671 SinI: Anti-repressor 22.6 1.1E+02 0.0023 17.0 2.3 17 40-56 2-18 (30)
383 COG2040 MHT1 Homocysteine/sele 22.6 5.4E+02 0.012 22.7 9.9 168 39-213 41-241 (300)
384 TIGR02668 moaA_archaeal probab 22.5 5.1E+02 0.011 22.4 12.4 120 37-175 39-172 (302)
385 PF10171 DUF2366: Uncharacteri 22.5 1.8E+02 0.0039 23.4 4.5 37 126-162 78-114 (173)
386 PRK13753 dihydropteroate synth 22.5 5.2E+02 0.011 22.5 10.2 102 105-214 22-129 (279)
387 COG1678 Putative transcription 22.5 59 0.0013 26.6 1.8 59 154-212 130-189 (194)
388 PRK11024 colicin uptake protei 22.5 2E+02 0.0043 22.0 4.7 52 106-162 86-137 (141)
389 PF09370 TIM-br_sig_trns: TIM- 22.3 90 0.002 27.0 2.9 52 108-166 66-117 (268)
390 PHA02820 phospholipase-D-like 22.3 6.3E+02 0.014 23.4 9.2 77 70-154 220-301 (424)
391 cd00959 DeoC 2-deoxyribose-5-p 22.3 4E+02 0.0088 21.6 6.8 70 39-123 129-202 (203)
392 PLN03233 putative glutamate-tR 22.1 4.6E+02 0.0099 25.2 7.8 59 106-172 58-116 (523)
393 TIGR00365 monothiol glutaredox 22.1 90 0.0019 22.2 2.6 39 80-128 9-47 (97)
394 PRK13561 putative diguanylate 22.1 4.7E+02 0.01 25.4 8.3 69 140-210 533-610 (651)
395 PF00388 PI-PLC-X: Phosphatidy 22.0 54 0.0012 25.2 1.5 21 45-65 30-50 (146)
396 PF09639 YjcQ: YjcQ protein; 22.0 67 0.0014 22.6 1.8 24 141-164 25-48 (88)
397 PRK14470 ribosomal RNA large s 22.0 5.8E+02 0.013 22.9 8.4 90 128-217 207-324 (336)
398 PF03472 Autoind_bind: Autoind 21.9 3.2E+02 0.0069 20.2 5.9 24 106-129 1-24 (149)
399 COG3607 Predicted lactoylgluta 21.8 1.5E+02 0.0032 22.6 3.6 27 39-65 81-107 (133)
400 TIGR00188 rnpA ribonuclease P 21.6 3.2E+02 0.0069 19.7 6.6 60 81-150 41-103 (105)
401 PF00072 Response_reg: Respons 21.6 2.8E+02 0.0061 19.1 5.3 55 124-181 42-98 (112)
402 PF09999 DUF2240: Uncharacteri 21.6 1E+02 0.0022 24.0 2.9 43 10-56 10-52 (144)
403 TIGR01163 rpe ribulose-phospha 21.4 4.3E+02 0.0094 21.2 9.3 98 106-207 9-107 (210)
404 PF10007 DUF2250: Uncharacteri 21.4 95 0.0021 22.2 2.5 50 110-162 8-57 (92)
405 KOG3086 Predicted dioxygenase 21.3 2.1E+02 0.0046 24.5 4.8 29 67-95 161-192 (296)
406 PRK14464 ribosomal RNA large s 21.0 6.2E+02 0.013 22.8 8.2 82 138-219 223-321 (344)
407 COG1149 MinD superfamily P-loo 21.0 2E+02 0.0044 25.0 4.8 81 124-216 162-251 (284)
408 TIGR03239 GarL 2-dehydro-3-deo 20.9 2.2E+02 0.0047 24.3 5.1 65 149-214 5-72 (249)
409 cd01965 Nitrogenase_MoFe_beta_ 20.8 6.6E+02 0.014 23.1 10.6 105 69-183 65-188 (428)
410 PRK14040 oxaloacetate decarbox 20.8 5E+02 0.011 25.3 8.0 99 105-207 24-140 (593)
411 cd08561 GDPD_cytoplasmic_ScUgp 20.8 3.5E+02 0.0076 22.6 6.4 22 39-60 11-32 (249)
412 cd00818 IleRS_core catalytic c 20.6 1.4E+02 0.0031 26.6 4.1 48 107-157 86-135 (338)
413 PRK06084 O-acetylhomoserine am 20.5 4.4E+02 0.0095 24.4 7.4 54 164-217 131-186 (425)
414 TIGR01856 hisJ_fam histidinol 20.5 5.2E+02 0.011 21.8 13.1 82 40-135 14-114 (253)
415 PF05378 Hydant_A_N: Hydantoin 20.4 3.4E+02 0.0073 21.7 5.8 23 140-163 133-155 (176)
416 PRK10128 2-keto-3-deoxy-L-rham 20.4 2.8E+02 0.0061 24.0 5.7 66 147-213 9-77 (267)
417 TIGR01328 met_gam_lyase methio 20.4 5.2E+02 0.011 23.4 7.8 53 165-217 133-187 (391)
418 COG3215 PilZ Tfp pilus assembl 20.3 3.6E+02 0.0077 19.8 5.3 79 40-120 19-106 (117)
419 cd00614 CGS_like CGS_like: Cys 20.1 6.3E+02 0.014 22.5 10.6 55 164-218 113-169 (369)
No 1
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=3.5e-64 Score=442.57 Aligned_cols=263 Identities=41% Similarity=0.632 Sum_probs=229.6
Q ss_pred CCcccCCCCCcccCcceeccccCCCCCCCCCCHHHHHHHHHHHHHCCCCccccccCCCCCcHHHHHHHHHhcCC-CCCEE
Q 024050 8 VPRVKLGTQGLEVSKLGYGCMNLSGGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLP-REKIQ 86 (273)
Q Consensus 8 m~~r~lg~sg~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~se~~lg~~l~~~~-r~~~~ 86 (273)
|++|+||++|++||+||||||.+|+.+ ...+.+++.++|++|+++||||||||+.||.|.||+++|++|++.+ |++++
T Consensus 1 m~~r~lG~~gl~vs~lglG~~~~g~~~-~~~~~~~a~~il~~A~d~Gin~~DTA~~Yg~g~sE~ilG~~l~~~~~Rd~vv 79 (316)
T COG0667 1 MKYRRLGRSGLKVSPLGLGTMTLGGDT-DDEEEAEAIEILDAALDAGINFFDTADVYGDGRSEEILGEALKERGRRDKVV 79 (316)
T ss_pred CCceecCCCCceecceeeeccccCCCC-CchhhhHHHHHHHHHHHcCCCEEECccccCCCchHHHHHHHHhccCCCCeEE
Confidence 789999999999999999999998742 2235667888999999999999999999999999999999999744 89999
Q ss_pred EEeccCcCCCCCccc-cccCCHHHHHHHHHHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEecCCCC
Q 024050 87 VATKFGIAGIGVAGV-IVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEAS 165 (273)
Q Consensus 87 i~tK~~~~~~~~~~~-~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~ 165 (273)
|+||++......... ..+.++++|+++++.||+||||||||+||+|+||...+.++++++|.+|+++|+||+||+||++
T Consensus 80 IaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~~~p~~e~~~aL~~l~~~G~ir~iG~S~~~ 159 (316)
T COG0667 80 IATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDPETPIEETLEALDELVREGKIRYIGVSNYS 159 (316)
T ss_pred EEEeeccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCeeEEEecCCC
Confidence 999998776321111 3567999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhc-CCceEEeeecccccccccccHHHHHHHhCCeEEecccCCCccCCCCCCCCCCCCchhhhh--c------
Q 024050 166 PGTIRRAHAV-HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVENVPADSFLVQ--R------ 236 (273)
Q Consensus 166 ~~~l~~~~~~-~~~~~~q~~~~l~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~--~------ 236 (273)
++++.++++. .+++++|.+||+++|+.+.+++++|+++||++++||||++|+|++++..+ +...+... +
T Consensus 160 ~~~i~~a~~~~~~~~~~Q~~ynl~~R~~e~~l~~~~~~~gi~~~~~spla~G~Ltgk~~~~--~~~~r~~~~~~~~~~~~ 237 (316)
T COG0667 160 AEQIAEALAVAAPIDSLQPEYNLLERDAEKELLPLCREEGIGLLAYSPLASGLLTGKYLPG--PEGSRASELPRFQRELT 237 (316)
T ss_pred HHHHHHHHHhcCCceeecccCccccccchhHHHHHHHHcCCeEEEecCccccccCCCcCCC--cchhhccccccchhhhh
Confidence 9999999999 69999999999999987777999999999999999999999999996653 22221110 0
Q ss_pred ----cCchhHHHHHHhcCCChHHHHHHhhhcCCCcccccCC
Q 024050 237 ----REPGQEQEYLFSHREPCQKVQLHFCSTSPSMGSRTGG 273 (273)
Q Consensus 237 ----~~~~~~~~~~~~~~~~~~q~aL~~~l~~p~v~s~~~g 273 (273)
.....++.++..+|.+++|+||+|++++|.|+++++|
T Consensus 238 ~~~~~~~~~l~~~a~~~g~t~aq~ALawvl~~~~v~~~I~G 278 (316)
T COG0667 238 ERGLAILRALEELAKELGATPAQVALAWVLAQPGVTSPIVG 278 (316)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCceEeec
Confidence 1122357889999999999999999999999999987
No 2
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=2.6e-62 Score=423.37 Aligned_cols=268 Identities=41% Similarity=0.637 Sum_probs=234.5
Q ss_pred ccccCCCcccCCCCCcccCcceeccccCCCCCCCCCCHHHHHHHHHHHHHCCCCccccccCCCCCcHHHHHHHHHhc--C
Q 024050 3 EEKHQVPRVKLGTQGLEVSKLGYGCMNLSGGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ--L 80 (273)
Q Consensus 3 ~~~~~m~~r~lg~sg~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~se~~lg~~l~~--~ 80 (273)
...+.|+++++|++|++||++|||||.+.. |+...++++++++|++|+|+|+||||||++||+|.||.++|++|++ .
T Consensus 7 ~~~~~~~~~~lg~~gl~Vs~lglG~m~~~~-~~~~~~~e~a~~~m~~a~e~Gin~fDtAe~Yg~~~~E~llg~~i~~~~~ 85 (336)
T KOG1575|consen 7 STELGMLRRKLGNSGLKVSPLGLGCMGWTT-FGGQIDKEEAFELLDHAYEAGINFFDTAEVYGNGQSEELLGEFIKSRGW 85 (336)
T ss_pred cchhcceeeeccCCCceecceeecceeeec-cccCCCHHHHHHHHHHHHHcCCCEEehhhhcCCcccHHHHHHHHHhcCC
Confidence 445569999999999999999999985443 5555799999999999999999999999999999999999999998 6
Q ss_pred CCCCEEEEeccCcCCCCCccccccCCHHHHHHHHHHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEe
Q 024050 81 PREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIG 160 (273)
Q Consensus 81 ~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iG 160 (273)
+|++++|+||++.... +......+..++.+.++.|++||+++|||+||+||+|+..|+++++++|.+++++|||||||
T Consensus 86 ~R~~vviaTK~~~~~~--~~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~~~piee~m~aL~~lve~Gki~yiG 163 (336)
T KOG1575|consen 86 RRDKVVIATKFGFDYG--GETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDPMVPIEETMRALTDLVEQGKIRYWG 163 (336)
T ss_pred cCCcEEEEEEEeccCC--CcCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCCCCCHHHHHHHHHHHHhcCceEEEE
Confidence 7999999999987662 11234567889999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHhhcCC--ceEEeeeccccccccc-ccHHHHHHHhCCeEEecccCCCccCCCCCC-CCCCCCchhhhh-
Q 024050 161 LSEASPGTIRRAHAVHP--ITAVQMEWSLWTRDIE-EEIIPLCRELGIGIVPYSPLGRGFFGGKAV-VENVPADSFLVQ- 235 (273)
Q Consensus 161 vS~~~~~~l~~~~~~~~--~~~~q~~~~l~~~~~~-~~l~~~~~~~gi~v~a~spl~~G~L~~~~~-~~~~~~~~~~~~- 235 (273)
+|++++++|.+++...+ ++++|++||++.|+.+ .++++.|++.||++++||||++|+||+++. .++.+.+.....
T Consensus 164 lSe~sa~~I~~a~~~~~~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL~~G~Ltgk~~~~e~~~~~~~~~~~ 243 (336)
T KOG1575|consen 164 LSEWSAEEIREAHAVAPIPIVAVQVEYSLLSRDKEERGIIPLCRELGIGLIAWSPLGRGLLTGKYKLGEDSRNGDKRFQF 243 (336)
T ss_pred eccCCHHHHHHHHHhcCCCceEeeeechhhhcchhhhhHHHHHHHcCcceEEecccccceeccCcccccccccccccccc
Confidence 99999999999999977 9999999999999955 669999999999999999999999999944 344444432110
Q ss_pred -----c--------cCchhHHHHHHhcCCChHHHHHHhhhcCCCcccccCC
Q 024050 236 -----R--------REPGQEQEYLFSHREPCQKVQLHFCSTSPSMGSRTGG 273 (273)
Q Consensus 236 -----~--------~~~~~~~~~~~~~~~~~~q~aL~~~l~~p~v~s~~~g 273 (273)
+ ....++.++|.++|+|++|+||+||++++.|.++++|
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~iA~k~g~T~~qlALawv~~~~~v~~pIpG 294 (336)
T KOG1575|consen 244 LGLSPQTEEGDKQKPILEALSKIAEKHGCTVPQLALAWVLSNGKVSSPIPG 294 (336)
T ss_pred cccccccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCEEecCC
Confidence 1 0122357899999999999999999999999999987
No 3
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=8.1e-58 Score=404.55 Aligned_cols=258 Identities=28% Similarity=0.425 Sum_probs=217.2
Q ss_pred cccCCCCCcccCcceeccccCCCCCCCCCCHHHHHHHHHHHHHCCCCccccccCCCCCcHHHHHHHHHhc--CCCCCEEE
Q 024050 10 RVKLGTQGLEVSKLGYGCMNLSGGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ--LPREKIQV 87 (273)
Q Consensus 10 ~r~lg~sg~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~se~~lg~~l~~--~~r~~~~i 87 (273)
||+||++|++||+||||||.+ +|...+.+++.++|++|+++|||+||||+.||.|.||+++|++|+. .+|++++|
T Consensus 1 ~r~lg~tg~~vs~lglGt~~~---~g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~~~~R~~~~i 77 (317)
T TIGR01293 1 YRNLGKSGLRVSCLGLGTWVT---FGGQISDEMAEQLLTLAYENGINLFDTAEVYAAGKAEVVLGNILKKKGWRRSSYVI 77 (317)
T ss_pred CcccCCCCCeecceeecCCcc---CCCCCCHHHHHHHHHHHHHcCCCeEECccccCCCccHHHHHHHHHhcCCCcccEEE
Confidence 589999999999999999974 2334578999999999999999999999999999999999999985 36999999
Q ss_pred EeccCcCCCCCccccccCCHHHHHHHHHHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEecCCCCHH
Q 024050 88 ATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPG 167 (273)
Q Consensus 88 ~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~ 167 (273)
+||+++.... ....+.+++.+++++++||+|||+||||+|++|+|+...++++++++|++|+++||||+||+|||+++
T Consensus 78 aTK~~~~~~~--~~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~~~~~~e~~~aL~~l~~~G~ir~iGvSn~~~~ 155 (317)
T TIGR01293 78 TTKIFWGGKA--ETERGLSRKHIIEGLKASLERLQLEYVDIVFANRPDPNTPMEETVRAMTYVINQGMAMYWGTSRWSSM 155 (317)
T ss_pred EeeeccCCCC--CCCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCCCCCCHHHHHHHHHHHHHcCCeeEEEecCCCHH
Confidence 9998643210 01124579999999999999999999999999999988889999999999999999999999999998
Q ss_pred HHHHHhhc------CCceEEeeecccccccc-cccHHHHHHHhCCeEEecccCCCccCCCCCCCCCCCCchhhh------
Q 024050 168 TIRRAHAV------HPITAVQMEWSLWTRDI-EEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVENVPADSFLV------ 234 (273)
Q Consensus 168 ~l~~~~~~------~~~~~~q~~~~l~~~~~-~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~------ 234 (273)
.++++... .+++++|++||+++++. +.+++++|+++||++++|+||++|+|++++... .|.+.+..
T Consensus 156 ~l~~~~~~~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~~~gi~v~a~spl~~G~Ltg~~~~~-~~~~~~~~~~~~~~ 234 (317)
T TIGR01293 156 EIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELYHKIGVGAMTWSPLACGLVSGKYDSG-IPPYSRATLKGYQW 234 (317)
T ss_pred HHHHHHHHHHHcCCCCcceeccccChHhcchhHHHHHHHHHHcCCeEEEeccccccccCCCCCCC-CCCcccccccccch
Confidence 88776432 46789999999999874 568999999999999999999999999986432 22221100
Q ss_pred ------------hccCchhHHHHHHhcCCChHHHHHHhhhcCCCcccccCC
Q 024050 235 ------------QRREPGQEQEYLFSHREPCQKVQLHFCSTSPSMGSRTGG 273 (273)
Q Consensus 235 ------------~~~~~~~~~~~~~~~~~~~~q~aL~~~l~~p~v~s~~~g 273 (273)
.......+.++|.++|++++|+||+|++++|.|+++++|
T Consensus 235 ~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqlal~w~l~~~~v~~~i~G 285 (317)
T TIGR01293 235 LKDKILSEEGRRQQARLKDLQAIAERLGCTLPQLAIAWCLRNEGVSSVLLG 285 (317)
T ss_pred hhhhhcchhhHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhcCCCCeEEEeC
Confidence 000013467889999999999999999999999998887
No 4
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=4.4e-57 Score=404.37 Aligned_cols=262 Identities=27% Similarity=0.359 Sum_probs=217.3
Q ss_pred CCcccCCCCCcccCcceeccccCCCCCCCCCCHHHHHHHHHHHHHCCCCccccccCCC-------CCcHHHHHHHHHhc-
Q 024050 8 VPRVKLGTQGLEVSKLGYGCMNLSGGYSSPVSEEDGISMIKHAFSKGITFFDTADVYG-------QNANEVLLGKALKQ- 79 (273)
Q Consensus 8 m~~r~lg~sg~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg-------~g~se~~lg~~l~~- 79 (273)
|+||+||+||++||+||||||++|. ..+.+++.++|++|+++|||+||||+.|| .|.||+.+|++|+.
T Consensus 1 m~~r~lg~t~~~vs~iglGt~~~g~----~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~~~~~~~~g~sE~~iG~aL~~~ 76 (346)
T PRK10625 1 MQYHRIPHSSLEVSTLGLGTMTFGE----QNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYIGNWLAKR 76 (346)
T ss_pred CCceecCCCCCccccEeEeccccCC----CCCHHHHHHHHHHHHHcCCCEEECccccCCCcCCCCCCchHHHHHHHHhhc
Confidence 7899999999999999999999864 34689999999999999999999999998 48899999999985
Q ss_pred CCCCCEEEEeccCcCCCCCc---cccccCCHHHHHHHHHHHHHHcCCCcccEEEecCCCC-----------------CCC
Q 024050 80 LPREKIQVATKFGIAGIGVA---GVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDT-----------------SVP 139 (273)
Q Consensus 80 ~~r~~~~i~tK~~~~~~~~~---~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~-----------------~~~ 139 (273)
.+|++++|+||++....... ....+.+++.+++++++||+|||+||||+|++|+|+. ..+
T Consensus 77 ~~R~~v~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~ 156 (346)
T PRK10625 77 GSREKLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVS 156 (346)
T ss_pred CCcceEEEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCcccccccccccccccccCCCC
Confidence 46999999999853211000 0112467999999999999999999999999999964 246
Q ss_pred HHHHHHHHHHHHHcCCccEEecCCCCHHHHHHHhhc------CCceEEeeecccccccccccHHHHHHHhCCeEEecccC
Q 024050 140 IEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAV------HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPL 213 (273)
Q Consensus 140 ~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~------~~~~~~q~~~~l~~~~~~~~l~~~~~~~gi~v~a~spl 213 (273)
+.++|++|++|+++||||+||+|||+.+.++++... ..+.++|++||++++..+.+++++|+++||++++|+||
T Consensus 157 ~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~~~~ll~~~~~~gi~via~spL 236 (346)
T PRK10625 157 LLETLDALAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCL 236 (346)
T ss_pred HHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccchhHHHHHHHHcCCeEEEeccc
Confidence 789999999999999999999999999888776532 35789999999999876678999999999999999999
Q ss_pred CCccCCCCCCCCCCCCchhh--hhcc----------CchhHHHHHHhcCCChHHHHHHhhhcCCCcccccCC
Q 024050 214 GRGFFGGKAVVENVPADSFL--VQRR----------EPGQEQEYLFSHREPCQKVQLHFCSTSPSMGSRTGG 273 (273)
Q Consensus 214 ~~G~L~~~~~~~~~~~~~~~--~~~~----------~~~~~~~~~~~~~~~~~q~aL~~~l~~p~v~s~~~g 273 (273)
++|+|++++.....|.+.+. ..++ ....+.++|.+++++++|+||+|++++|.|+++++|
T Consensus 237 ~~G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~t~aqval~w~l~~~~v~~~I~G 308 (346)
T PRK10625 237 AFGTLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIAKRHGLDPAQMALAFVRRQPFVASTLLG 308 (346)
T ss_pred cCeeccCCCCCCCCCCCcccccccccccccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEeC
Confidence 99999998543333322110 0000 023467899999999999999999999999998887
No 5
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=7.3e-57 Score=402.54 Aligned_cols=262 Identities=26% Similarity=0.447 Sum_probs=217.8
Q ss_pred CCCcccCCCCCcccCcceeccccCCCCCCCCCCHHHHHHHHHHHHHCCCCccccccCCCC--CcHHHHHHHHHhc---CC
Q 024050 7 QVPRVKLGTQGLEVSKLGYGCMNLSGGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQ--NANEVLLGKALKQ---LP 81 (273)
Q Consensus 7 ~m~~r~lg~sg~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~--g~se~~lg~~l~~---~~ 81 (273)
.|++|+||++|++||+||||||+. +|...+.+++.++|++|+++|||+||||+.||+ |.||+.+|++|++ .+
T Consensus 12 ~m~~r~lg~tg~~vs~lglG~~~~---~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~YG~~~g~sE~~lG~~l~~~~~~~ 88 (346)
T PRK09912 12 QMQYRYCGKSGLRLPALSLGLWHN---FGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFAAY 88 (346)
T ss_pred CcceeecCCCCcccccccccCccc---cCCCCCHHHHHHHHHHHHHCCCCEEEChhhhCCCCCCcHHHHHHHHHhcccCC
Confidence 589999999999999999999972 333336778899999999999999999999995 8999999999985 26
Q ss_pred CCCEEEEeccCcCCCCCccccccCCHHHHHHHHHHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEec
Q 024050 82 REKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGL 161 (273)
Q Consensus 82 r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGv 161 (273)
|++++|+||++....+ .......+++++++++++||+|||+||||+|++|+|+...++++++++|++|+++||||+|||
T Consensus 89 Rd~~~I~TK~g~~~~~-~~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~GkIr~iGv 167 (346)
T PRK09912 89 RDELIISTKAGYDMWP-GPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSGKALYVGI 167 (346)
T ss_pred CCeEEEEEEecccCCC-CcCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCeeEEEe
Confidence 9999999998753111 001123579999999999999999999999999999988889999999999999999999999
Q ss_pred CCCCHHHHHHHhhc-----CCceEEeeeccccccccc-ccHHHHHHHhCCeEEecccCCCccCCCCCCCCCCCCchhh--
Q 024050 162 SEASPGTIRRAHAV-----HPITAVQMEWSLWTRDIE-EEIIPLCRELGIGIVPYSPLGRGFFGGKAVVENVPADSFL-- 233 (273)
Q Consensus 162 S~~~~~~l~~~~~~-----~~~~~~q~~~~l~~~~~~-~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~-- 233 (273)
|||++++++++.+. .++.++|++||++++..+ .+++++|+++||+|++|+||++|+|++++... .|.+.+.
T Consensus 168 Sn~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via~spl~~G~Lt~~~~~~-~~~~~~~~~ 246 (346)
T PRK09912 168 SSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLTGKYLNG-IPQDSRMHR 246 (346)
T ss_pred cCCCHHHHHHHHHHHHhcCCCcEEeeccCCceecccchhhHHHHHHHcCceEEEehhhcCccccCCCCCC-CCCCccccc
Confidence 99999988765542 367899999999998754 57999999999999999999999999985332 1211100
Q ss_pred --------hhcc-------CchhHHHHHHhcCCChHHHHHHhhhcCCCcccccCC
Q 024050 234 --------VQRR-------EPGQEQEYLFSHREPCQKVQLHFCSTSPSMGSRTGG 273 (273)
Q Consensus 234 --------~~~~-------~~~~~~~~~~~~~~~~~q~aL~~~l~~p~v~s~~~g 273 (273)
.... ....+.++|.++|+|++|+||+|++++|.|+++++|
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~AL~w~l~~~~v~~~i~G 301 (346)
T PRK09912 247 EGNKVRGLTPKMLTEANLNSLRLLNEMAQQRGQSMAQMALSWLLKDERVTSVLIG 301 (346)
T ss_pred cccchhhhchhhccHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEEEeC
Confidence 0000 013467889999999999999999999999999887
No 6
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=6.6e-56 Score=391.96 Aligned_cols=255 Identities=30% Similarity=0.488 Sum_probs=212.6
Q ss_pred cccCCCCCcccCcceeccccCCCCCCCCCCHHHHHHHHHHHHHCCCCccccccCCCCCcHHHHHHHHHhc--CCCCCEEE
Q 024050 10 RVKLGTQGLEVSKLGYGCMNLSGGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ--LPREKIQV 87 (273)
Q Consensus 10 ~r~lg~sg~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~se~~lg~~l~~--~~r~~~~i 87 (273)
||+||+||++||.||||||++|..|+. ++.+++.++|++|++.|||+||||+.||.|.+|+.+|++|++ .+|++++|
T Consensus 1 ~r~lg~t~~~vs~lglG~~~~g~~~~~-~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~~~~R~~v~I 79 (314)
T PLN02587 1 LRELGSTGLKVSSVGFGASPLGSVFGP-VSEEDAIASVREAFRLGINFFDTSPYYGGTLSEKVLGKALKALGIPREKYVV 79 (314)
T ss_pred CCcCCCCCCcccCcccccccccCCCCC-CCHHHHHHHHHHHHHcCCCEEECcCccCCCchHHHHHHHHHhCCCCcceEEE
Confidence 689999999999999999999865553 588999999999999999999999999999999999999986 47999999
Q ss_pred EeccCcCCCCCccccccCCHHHHHHHHHHHHHHcCCCcccEEEecCCCCC---CCHHHHHHHHHHHHHcCCccEEecCCC
Q 024050 88 ATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS---VPIEETIGEMKKLVEEGKIKYIGLSEA 164 (273)
Q Consensus 88 ~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~---~~~~~~~~~L~~l~~~G~ir~iGvS~~ 164 (273)
+||++.... ..+.+++.+++++++||+|||+||||+|++|+|+.. .+++++|++|++|+++||||+||+|||
T Consensus 80 ~TK~~~~~~-----~~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~ 154 (314)
T PLN02587 80 STKCGRYGE-----GFDFSAERVTKSVDESLARLQLDYVDILHCHDIEFGSLDQIVNETIPALQKLKESGKVRFIGITGL 154 (314)
T ss_pred EeccccCCC-----CCCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCcchhhhHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 999874321 124679999999999999999999999999999642 346789999999999999999999999
Q ss_pred CHHHHHHHhhc-----CCceEEeeecccccccccccHHHHHHHhCCeEEecccCCCccCCCCCCCCCCCCchhhhhccCc
Q 024050 165 SPGTIRRAHAV-----HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVENVPADSFLVQRREP 239 (273)
Q Consensus 165 ~~~~l~~~~~~-----~~~~~~q~~~~l~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~ 239 (273)
++++++.+... ..+..+|++||+.++.. .+++++|+++||++++|+||++|+|+++......+..... ....
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~ll~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~--~~~~ 231 (314)
T PLN02587 155 PLAIFTYVLDRVPPGTVDVILSYCHYSLNDSSL-EDLLPYLKSKGVGVISASPLAMGLLTENGPPEWHPAPPEL--KSAC 231 (314)
T ss_pred CHHHHHHHHHhhhcCCCCeEEeccccCcchhhH-HHHHHHHHHcCceEEEechhhccccCCCCCCCCCCCCHHH--HHHH
Confidence 99888776643 23445678999988754 5899999999999999999999999987322111111111 1112
Q ss_pred hhHHHHHHhcCCChHHHHHHhhhcCCCcccccCC
Q 024050 240 GQEQEYLFSHREPCQKVQLHFCSTSPSMGSRTGG 273 (273)
Q Consensus 240 ~~~~~~~~~~~~~~~q~aL~~~l~~p~v~s~~~g 273 (273)
..+.++|.++++|++|+||+|++++|.|+++++|
T Consensus 232 ~~l~~~a~~~~~s~aq~al~~~l~~~~v~~~i~G 265 (314)
T PLN02587 232 AAAATHCKEKGKNISKLALQYSLSNKDISTTLVG 265 (314)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEec
Confidence 2356789999999999999999999999999887
No 7
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=5.9e-55 Score=370.98 Aligned_cols=221 Identities=30% Similarity=0.470 Sum_probs=194.9
Q ss_pred CCcccCCCCCcccCcceeccccCCCCCCCCCCHHHHHHHHHHHHHCCCCccccccCCCCCcHHHHHHHHHhc--CCCCCE
Q 024050 8 VPRVKLGTQGLEVSKLGYGCMNLSGGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ--LPREKI 85 (273)
Q Consensus 8 m~~r~lg~sg~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~se~~lg~~l~~--~~r~~~ 85 (273)
+.+.+| ++|.+||.||||||++++ .+...+++.+|++.|+|+||||..|| ||+.+|+++++ .+|+++
T Consensus 3 ~~~~~l-~~g~~iP~iGlGt~~~~~-------~~~~~~av~~Al~~Gyr~IDTA~~Yg---nE~~VG~aI~~s~v~Reel 71 (280)
T COG0656 3 KTKVTL-NNGVEIPAIGLGTWQIGD-------DEWAVRAVRAALELGYRLIDTAEIYG---NEEEVGEAIKESGVPREEL 71 (280)
T ss_pred Cceeec-CCCCcccCcceEeeecCC-------chhHHHHHHHHHHhCcceEecHhHhc---CHHHHHHHHHhcCCCHHHe
Confidence 455777 567789999999999764 33399999999999999999999999 99999999998 789999
Q ss_pred EEEeccCcCCCCCccccccCCHHHHHHHHHHHHHHcCCCcccEEEecCCCCC--CCHHHHHHHHHHHHHcCCccEEecCC
Q 024050 86 QVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS--VPIEETIGEMKKLVEEGKIKYIGLSE 163 (273)
Q Consensus 86 ~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~--~~~~~~~~~L~~l~~~G~ir~iGvS~ 163 (273)
||+||++... .+.+.+.+++++||+|||+||+|||+||||.+. ..+.++|++|++++++|+||+|||||
T Consensus 72 FittKvw~~~---------~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~~~~~~~etw~alE~l~~~G~ir~IGVSN 142 (280)
T COG0656 72 FITTKVWPSD---------LGYDETLKALEASLKRLGLDYVDLYLIHWPVPNKYVVIEETWKALEELVDEGLIRAIGVSN 142 (280)
T ss_pred EEEeecCCcc---------CCcchHHHHHHHHHHHhCCCceeEEEECCCCCccCccHHHHHHHHHHHHhcCCccEEEeeC
Confidence 9999998766 457889999999999999999999999999752 33789999999999999999999999
Q ss_pred CCHHHHHHHhhc--CCceEEeeecccccccccccHHHHHHHhCCeEEecccCCCcc-CCCCCCCCCCCCchhhhhccCch
Q 024050 164 ASPGTIRRAHAV--HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGF-FGGKAVVENVPADSFLVQRREPG 240 (273)
Q Consensus 164 ~~~~~l~~~~~~--~~~~~~q~~~~l~~~~~~~~l~~~~~~~gi~v~a~spl~~G~-L~~~~~~~~~~~~~~~~~~~~~~ 240 (273)
|++++|+++++. ..|+++|++||++.++. +++++|+++||.++|||||++|. |.. .+
T Consensus 143 F~~~~L~~l~~~~~~~p~~NQIe~hp~~~q~--el~~~~~~~gI~v~AysPL~~g~~l~~------------------~~ 202 (280)
T COG0656 143 FGVEHLEELLSLAKVKPAVNQIEYHPYLRQP--ELLPFCQRHGIAVEAYSPLAKGGKLLD------------------NP 202 (280)
T ss_pred CCHHHHHHHHHhcCCCCceEEEEeccCCCcH--HHHHHHHHcCCEEEEECCccccccccc------------------Ch
Confidence 999999999877 45899999999999985 49999999999999999999643 221 12
Q ss_pred hHHHHHHhcCCChHHHHHHhhhcCCCcc
Q 024050 241 QEQEYLFSHREPCQKVQLHFCSTSPSMG 268 (273)
Q Consensus 241 ~~~~~~~~~~~~~~q~aL~~~l~~p~v~ 268 (273)
.+..++.+||+|++|++|+|+++++.+.
T Consensus 203 ~l~~Ia~k~g~t~AQv~L~W~i~~gv~~ 230 (280)
T COG0656 203 VLAEIAKKYGKTPAQVALRWHIQRGVIV 230 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCcEE
Confidence 4678999999999999999999988443
No 8
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=3.8e-54 Score=375.91 Aligned_cols=252 Identities=41% Similarity=0.631 Sum_probs=221.9
Q ss_pred cccCCCCCcccCcceeccccCCCCCCCCCCHHHHHHHHHHHHHCCCCccccccCCCCCcHHHHHHHHHhcCC-CCCEEEE
Q 024050 10 RVKLGTQGLEVSKLGYGCMNLSGGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLP-REKIQVA 88 (273)
Q Consensus 10 ~r~lg~sg~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~se~~lg~~l~~~~-r~~~~i~ 88 (273)
+|+||++|++||+||||||.++..+ .+.+++.+++++|++.|||+||||+.||.|.+|+.+|++|+..+ |++++|+
T Consensus 1 ~r~lg~tg~~vs~lg~G~~~~~~~~---~~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~sE~~lG~al~~~~~R~~~~i~ 77 (285)
T cd06660 1 YRTLGKTGLKVSRLGLGTWQLGGGY---VDEEEAAAAVRAALDAGINFIDTADVYGDGESEELLGEALKERGPREEVFIA 77 (285)
T ss_pred CcccCCCCceecCcceeccccCCCC---CCHHHHHHHHHHHHHcCCCeEECccccCCCCCHHHHHHHHhccCCcCcEEEE
Confidence 5899999999999999999987644 47899999999999999999999999999999999999999754 9999999
Q ss_pred eccCcCCCCCccccccCCHHHHHHHHHHHHHHcCCCcccEEEecCCCCCCC-HHHHHHHHHHHHHcCCccEEecCCCCHH
Q 024050 89 TKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVP-IEETIGEMKKLVEEGKIKYIGLSEASPG 167 (273)
Q Consensus 89 tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~-~~~~~~~L~~l~~~G~ir~iGvS~~~~~ 167 (273)
||++..... ..+.+++.+++++++||++|++||||+|+||+|+.... ..++|++|++++++|+||+|||||++++
T Consensus 78 tK~~~~~~~----~~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~ 153 (285)
T cd06660 78 TKVGPRPGD----GRDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDTPDIEETLRALEELVKEGKIRAIGVSNFSAE 153 (285)
T ss_pred eeecCCCCC----CCCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCCCHHHHHHHHHHHHHcCCccEEEeeCCCHH
Confidence 999865421 13467999999999999999999999999999988766 8999999999999999999999999999
Q ss_pred HHHHHhhc--CCceEEeeecccccccccccHHHHHHHhCCeEEecccCCCccCCCCCCCCCCCCchhhhhccCchhHHHH
Q 024050 168 TIRRAHAV--HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVENVPADSFLVQRREPGQEQEY 245 (273)
Q Consensus 168 ~l~~~~~~--~~~~~~q~~~~l~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (273)
.+.+++.. .+++++|++||++++..+.+++++|+++||+|++|+||++|.|+++......+.... ....+..+
T Consensus 154 ~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~~l~~g~l~~~~~~~~~~~~~~-----~~~~~~~~ 228 (285)
T cd06660 154 QLEEALAAAGVPPAVNQVEYNLLDRQAEEELLPYCREHGIGVIAYSPLAGGLLTGKYLPGAPPPEGD-----LLEALKEI 228 (285)
T ss_pred HHHHHHHhhCCCceEEecccCcccCchHHHHHHHHHHcCcEEEEeccccCceecCCCCCCCCCChhh-----HHHHHHHH
Confidence 99999888 899999999999999865579999999999999999999999987643322211111 12346788
Q ss_pred HHhcCCChHHHHHHhhhcCCCcccccCC
Q 024050 246 LFSHREPCQKVQLHFCSTSPSMGSRTGG 273 (273)
Q Consensus 246 ~~~~~~~~~q~aL~~~l~~p~v~s~~~g 273 (273)
+..++.+++|+||+|++++|.+.++++|
T Consensus 229 ~~~~~~s~~q~al~~~l~~p~~~~~i~g 256 (285)
T cd06660 229 AEKHGVTPAQVALRWLLQQPGVTSVIPG 256 (285)
T ss_pred HHHhCCCHHHHHHHHHhcCCCCeEEEeC
Confidence 9999999999999999999999999886
No 9
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=8.1e-52 Score=361.83 Aligned_cols=247 Identities=25% Similarity=0.380 Sum_probs=206.8
Q ss_pred ccCCCcccCCCCCcccCcceeccccCCC--CCCCCCCHHHHHHHHHHHHHCCCCccccccCCCCCcHHHHHHHHHhcCCC
Q 024050 5 KHQVPRVKLGTQGLEVSKLGYGCMNLSG--GYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPR 82 (273)
Q Consensus 5 ~~~m~~r~lg~sg~~vs~lglG~~~~~~--~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~se~~lg~~l~~~~r 82 (273)
.|+-.+.+|+ |++||+||||||++|+ .||...+++++.++|++|++.|||+||||+.||.|.+|+.+|++++ ..|
T Consensus 4 ~~~~~~~~l~--g~~vs~iglG~~~lg~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~~~sE~~lg~~l~-~~R 80 (290)
T PRK10376 4 IMSSGTFTLG--GRSVNRLGYGAMQLAGPGVFGPPKDRDAAIAVLREAVALGVNHIDTSDFYGPHVTNQLIREALH-PYP 80 (290)
T ss_pred cccCCceecC--CeeecccceeccccCCCCcCCCCCCHHHHHHHHHHHHHcCCCeEEChhhcCCCcHHHHHHHHHh-cCC
Confidence 3444456674 9999999999999975 3565557899999999999999999999999999999999999997 469
Q ss_pred CCEEEEeccCcCCCCCccccccCCHHHHHHHHHHHHHHcCCCcccEEEecCCCC-----CCCHHHHHHHHHHHHHcCCcc
Q 024050 83 EKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDT-----SVPIEETIGEMKKLVEEGKIK 157 (273)
Q Consensus 83 ~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~-----~~~~~~~~~~L~~l~~~G~ir 157 (273)
++++|+||++........+....+++.+++++++||+||++||||+|++|+++. ..+..++|++|++|+++||||
T Consensus 81 ~~~~i~TK~g~~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~~h~p~~~~~~~~~~~l~~l~~~Gkir 160 (290)
T PRK10376 81 DDLTIVTKVGARRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGDGHGPAEGSIEEPLTVLAELQRQGLVR 160 (290)
T ss_pred CeEEEEeeecccCCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCCCCCCCHHHHHHHHHHHHHCCcee
Confidence 999999998754311111223567999999999999999999999999887521 234789999999999999999
Q ss_pred EEecCCCCHHHHHHHhhcCCceEEeeecccccccccccHHHHHHHhCCeEEecccCCCccCCCCCCCCCCCCchhhhhcc
Q 024050 158 YIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVENVPADSFLVQRR 237 (273)
Q Consensus 158 ~iGvS~~~~~~l~~~~~~~~~~~~q~~~~l~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~ 237 (273)
+||||||+++.++++.+..+++++|++||++++.. .+++++|+++||++++|+||+++. + .
T Consensus 161 ~iGvSn~~~~~l~~~~~~~~~~~~q~~~~~~~~~~-~~~~~~~~~~gi~v~a~~pL~g~~----------~--------~ 221 (290)
T PRK10376 161 HIGLSNVTPTQVAEARKIAEIVCVQNHYNLAHRAD-DALIDALARDGIAYVPFFPLGGFT----------P--------L 221 (290)
T ss_pred EEEecCCCHHHHHHHHhhCCeEEEecccCCCcCCh-HHHHHHHHHcCCEEEEeecCCCCC----------h--------h
Confidence 99999999999999988889999999999999764 679999999999999999997331 0 0
Q ss_pred CchhHHHHHHhcCCChHHHHHHhhhcCCCcccccCC
Q 024050 238 EPGQEQEYLFSHREPCQKVQLHFCSTSPSMGSRTGG 273 (273)
Q Consensus 238 ~~~~~~~~~~~~~~~~~q~aL~~~l~~p~v~s~~~g 273 (273)
..+.+.++|.+++.+++|+||+|++++|.+.++++|
T Consensus 222 ~~~~l~~ia~~~~~t~aq~al~w~l~~~~~~~~i~G 257 (290)
T PRK10376 222 QSSTLSDVAASLGATPMQVALAWLLQRSPNILLIPG 257 (290)
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEeeC
Confidence 123467899999999999999999998766677776
No 10
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=2.5e-52 Score=364.17 Aligned_cols=245 Identities=35% Similarity=0.554 Sum_probs=206.5
Q ss_pred cceeccccCCCCCCCCCCHHHHHHHHHHHHHCCCCccccccCCCCCcHHHHHHHHHhc--CCCCCEEEEeccCcCCCCCc
Q 024050 22 KLGYGCMNLSGGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ--LPREKIQVATKFGIAGIGVA 99 (273)
Q Consensus 22 ~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~se~~lg~~l~~--~~r~~~~i~tK~~~~~~~~~ 99 (273)
+||||||++++. ..+.+++.++|+.|++.|||+||||+.||.|.+|+.+|++|++ .+|++++|+||+... .
T Consensus 1 ~l~lG~~~~~~~---~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~g~sE~~lg~~l~~~~~~r~~~~i~tK~~~~----~ 73 (283)
T PF00248_consen 1 PLGLGTWRLGGE---RVSEEEAEAILRRALEAGINFFDTADSYGNGRSERILGRALRKSRVPRDDIFISTKVYGD----G 73 (283)
T ss_dssp SBEEECTTBTTT---TSTHHHHHHHHHHHHHTT--EEEECGGGGGGTHHHHHHHHHHHTSSTGGGSEEEEEEESS----S
T ss_pred CEEEEccccCCC---CCCHHHHHHHHHHHHHcCCCeecccccccccccccccccccccccccccccccccccccc----c
Confidence 589999998753 5689999999999999999999999999999999999999997 789999999999222 2
Q ss_pred cccccCCHHHHHHHHHHHHHHcCCCcccEEEecCCCCCCC-HHHHHHHHHHHHHcCCccEEecCCCCHHHHHHH--hhcC
Q 024050 100 GVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVP-IEETIGEMKKLVEEGKIKYIGLSEASPGTIRRA--HAVH 176 (273)
Q Consensus 100 ~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~-~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~--~~~~ 176 (273)
.+....+++.+++++++||++||+||||+|++|+|+.... ..++|++|++|+++|+||+||||||+++.++++ ....
T Consensus 74 ~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~ 153 (283)
T PF00248_consen 74 KPEPDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPSEDALEEVWEALEELKKEGKIRHIGVSNFSPEQLEAALKIGSI 153 (283)
T ss_dssp STGGGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTSSHHHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHTCTSS
T ss_pred cccccccccccccccccccccccccchhccccccccccccccchhhhhhhhccccccccccccccccccccccccccccc
Confidence 3355678999999999999999999999999999999988 999999999999999999999999999999999 5558
Q ss_pred CceEEeeecccccccccccHHHHHHHhCCeEEecccCCCccCCCCCCCCCCCCchhhh--hccCchhHHHHHHhcCCChH
Q 024050 177 PITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVENVPADSFLV--QRREPGQEQEYLFSHREPCQ 254 (273)
Q Consensus 177 ~~~~~q~~~~l~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 254 (273)
+|+++|++||++++....+++++|+++||++++|+||++|+|++++.....+...... .......+.+++.+++++++
T Consensus 154 ~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~~l~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~s~~ 233 (283)
T PF00248_consen 154 PPDVVQINYNLLNRREEEGLLEFCREHGIGVIAYSPLAGGLLTGKYKSPPPPPSRASLRDAQELADALRELAEEHGVSPA 233 (283)
T ss_dssp -ESEEEEE-BTTBHBGGHHHHHHHHHTT-EEEEESTTGGGCGGTTTTTTTTSTTTSGSSTHGGGHHHHHHHHHHHTSSHH
T ss_pred cccccccccccccccccccccccccccccccccccccccCccccccccCCCcccccccchhhhhhhhhhhhhhhcccccc
Confidence 8999999999997666689999999999999999999999999885443322211110 11223456789999999999
Q ss_pred HHHHHhhhcCCCcccccCC
Q 024050 255 KVQLHFCSTSPSMGSRTGG 273 (273)
Q Consensus 255 q~aL~~~l~~p~v~s~~~g 273 (273)
|+||+|++++|.++++++|
T Consensus 234 q~al~~~l~~~~~~~~i~g 252 (283)
T PF00248_consen 234 QLALRWVLSHPGVASVIVG 252 (283)
T ss_dssp HHHHHHHHTSHTTEEEEEB
T ss_pred hhhhhhhhhccccccccCC
Confidence 9999999999999999887
No 11
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=6.8e-52 Score=361.88 Aligned_cols=240 Identities=18% Similarity=0.233 Sum_probs=199.9
Q ss_pred CcccCcceeccccCCCC-------CCCCCCHHHHHHHHHHHHHCCCCccccccCCCCCcHHHHHHHHHhcCCCCCEEEEe
Q 024050 17 GLEVSKLGYGCMNLSGG-------YSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVAT 89 (273)
Q Consensus 17 g~~vs~lglG~~~~~~~-------~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~se~~lg~~l~~~~r~~~~i~t 89 (273)
+++||+||||||++|.. |+ .++++++.++|+.|++.||||||||+.|| .||+.+|++|+...+++++|+|
T Consensus 2 ~~~vs~iglGt~~~g~~~~~~~~~~~-~~~~~ea~~~l~~A~~~Gin~~DTA~~YG--~SE~~lG~al~~~~~~~~~i~t 78 (292)
T PRK14863 2 SSPVSKLGLAAAQFGLDPGSSSAPRG-RTPEAEARDILNIAARAGLSVLDASGLFG--RAETVLGQLIPRPVPFRVTLST 78 (292)
T ss_pred CCcceeeeeeeeccCCCcccccCCCC-CCCHHHHHHHHHHHHHcCCCEEecchhhh--hHHHHHhhhhccCCceEeeccc
Confidence 57899999999999863 33 46899999999999999999999999997 7999999999843346788999
Q ss_pred ccCcCCCCCccccccCCHHHHHHHHHHHHHHcCCCcccEEEecCCCCC-CCH-HHHHHHHHHHHHcCCccEEecCCCCHH
Q 024050 90 KFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS-VPI-EETIGEMKKLVEEGKIKYIGLSEASPG 167 (273)
Q Consensus 90 K~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~-~~~-~~~~~~L~~l~~~G~ir~iGvS~~~~~ 167 (273)
|.. +.+++.+++++++||+|||+||||+|++|+|+.. .+. +++|++|++|+++||||+|||||++++
T Consensus 79 k~~-----------~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~ 147 (292)
T PRK14863 79 VRA-----------DRGPDFVEAEARASLRRMGVERADAILVHSPTELFGPHGAALWERLQALKDQGLFAKIGVSAHASD 147 (292)
T ss_pred ccc-----------cccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhcCcchHHHHHHHHHHHHcCCcceEeeeccCHH
Confidence 842 1348899999999999999999999999999763 333 578999999999999999999999999
Q ss_pred HHHHHhhcCCceEEeeeccccccccc-ccHHHHHHHhCCeEEecccCCCccCCCCCCCCCCCCchhhhhccCchhHHHHH
Q 024050 168 TIRRAHAVHPITAVQMEWSLWTRDIE-EEIIPLCRELGIGIVPYSPLGRGFFGGKAVVENVPADSFLVQRREPGQEQEYL 246 (273)
Q Consensus 168 ~l~~~~~~~~~~~~q~~~~l~~~~~~-~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (273)
++..+....+++++|++||+++++.+ .+++++|+++||++++|+||++|+|+++.. ..+.. ..........+.+++
T Consensus 148 ~~~~~~~~~~~~~~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~G~L~~~~~--~~~~~-~~~~~~~~~~~~~~~ 224 (292)
T PRK14863 148 DPVGVARRFKPDILQAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFLNGLLFLPPD--RVPAQ-LKGASGRLSRVRRMI 224 (292)
T ss_pred HHHHHHhcCCCCEEEecCCcccccccccchHHHHHhCCCEEEEechhhCccccCCcc--cCccc-hhhhhHHHHHHHHHH
Confidence 98888777899999999999998754 579999999999999999999999986421 11111 000001122345677
Q ss_pred HhcCCChHHHHHHhhhcCCCcccccCC
Q 024050 247 FSHREPCQKVQLHFCSTSPSMGSRTGG 273 (273)
Q Consensus 247 ~~~~~~~~q~aL~~~l~~p~v~s~~~g 273 (273)
..++.+++|+||+|++++|.|+++++|
T Consensus 225 ~~~~~s~aqlalaw~l~~p~v~~~I~G 251 (292)
T PRK14863 225 AEGRSDPLQAALGFALSRPEGSAVLVG 251 (292)
T ss_pred HHcCCCHHHHHHHHHHhCCCCCeEEEe
Confidence 788999999999999999999999887
No 12
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=9.6e-50 Score=344.80 Aligned_cols=214 Identities=24% Similarity=0.369 Sum_probs=187.8
Q ss_pred cccCcceeccccCCCCCCCCCCHHHHHHHHHHHHHCCCCccccccCCCCCcHHHHHHHHHhc--CCCCCEEEEeccCcCC
Q 024050 18 LEVSKLGYGCMNLSGGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ--LPREKIQVATKFGIAG 95 (273)
Q Consensus 18 ~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~se~~lg~~l~~--~~r~~~~i~tK~~~~~ 95 (273)
++||+||||||+++ .+++.+++++|++.|||+||||+.|| +|+.+|++|+. .+|+++||+||++..
T Consensus 1 ~~vs~lglGt~~~~--------~~~~~~~i~~A~~~Gi~~~DTA~~Yg---~E~~lG~al~~~~~~R~~v~i~TK~~~~- 68 (267)
T PRK11172 1 MSIPAFGLGTFRLK--------DQVVIDSVKTALELGYRAIDTAQIYD---NEAAVGQAIAESGVPRDELFITTKIWID- 68 (267)
T ss_pred CCCCCEeeEccccC--------hHHHHHHHHHHHHcCCCEEEccchhC---CHHHHHHHHHHcCCChhHeEEEEEeCCC-
Confidence 36999999999753 47799999999999999999999998 79999999985 479999999998532
Q ss_pred CCCccccccCCHHHHHHHHHHHHHHcCCCcccEEEecCCCCC--CCHHHHHHHHHHHHHcCCccEEecCCCCHHHHHHHh
Q 024050 96 IGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS--VPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAH 173 (273)
Q Consensus 96 ~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~--~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~ 173 (273)
..+++.+++++++||+|||+||||+|++|+|++. .+..++|++|++|+++||||+||||||+++++++++
T Consensus 69 --------~~~~~~~~~~~~~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~ 140 (267)
T PRK11172 69 --------NLAKDKLIPSLKESLQKLRTDYVDLTLIHWPSPNDEVSVEEFMQALLEAKKQGLTREIGISNFTIALMKQAI 140 (267)
T ss_pred --------CCCHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEccCCHHHHHHHH
Confidence 2468999999999999999999999999999764 567899999999999999999999999999999887
Q ss_pred hc---CCceEEeeecccccccccccHHHHHHHhCCeEEecccCCCccCCCCCCCCCCCCchhhhhccCchhHHHHHHhcC
Q 024050 174 AV---HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVENVPADSFLVQRREPGQEQEYLFSHR 250 (273)
Q Consensus 174 ~~---~~~~~~q~~~~l~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (273)
+. .+++++|++||++++. .+++++|+++||+|++|+||++|.+.. ...+.++|.+++
T Consensus 141 ~~~~~~~~~~~Q~~~~~~~~~--~~ll~~~~~~gi~v~a~spl~~G~~~~------------------~~~l~~~a~~~~ 200 (267)
T PRK11172 141 AAVGAENIATNQIELSPYLQN--RKVVAFAKEHGIHVTSYMTLAYGKVLK------------------DPVIARIAAKHN 200 (267)
T ss_pred HhcCCCCCeEEeeecCCCCCc--HHHHHHHHHCCCEEEEECCCCCCcccC------------------CHHHHHHHHHhC
Confidence 64 3689999999999885 679999999999999999999986542 123678999999
Q ss_pred CChHHHHHHhhhcCCCcccccCC
Q 024050 251 EPCQKVQLHFCSTSPSMGSRTGG 273 (273)
Q Consensus 251 ~~~~q~aL~~~l~~p~v~s~~~g 273 (273)
.|++|+||+|++++|.+ +++|
T Consensus 201 ~s~aqval~w~l~~~~~--~i~g 221 (267)
T PRK11172 201 ATPAQVILAWAMQLGYS--VIPS 221 (267)
T ss_pred CCHHHHHHHHHHhCCCE--eecC
Confidence 99999999999999843 5554
No 13
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=5.9e-50 Score=329.70 Aligned_cols=262 Identities=28% Similarity=0.453 Sum_probs=230.1
Q ss_pred CCCcccCCCCCcccCcceeccccCCCCCCCCCCHHHHHHHHHHHHHCCCCccccccCCCCCcHHHHHHHHHhcCCCCCEE
Q 024050 7 QVPRVKLGTQGLEVSKLGYGCMNLSGGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQ 86 (273)
Q Consensus 7 ~m~~r~lg~sg~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~se~~lg~~l~~~~r~~~~ 86 (273)
.|.||.+|++|++||+|+||++.++..|+. .++++....+..|++.|||+|||++.||++++|+.+|.++++.||+.+|
T Consensus 21 rmeyR~lg~tgl~VSk~~fGga~L~~~fgd-~~~e~~i~tv~eA~k~GINyiDTsp~Ygqs~se~~lg~al~~vPR~aYy 99 (342)
T KOG1576|consen 21 RMEYRQLGSTGLRVSKLGFGGAALGQLFGD-EDEEEGILTVIEAFKSGINYIDTSPYYGQSRSEEGLGLALKDVPREAYY 99 (342)
T ss_pred HHHHhhcCCCcceeeeeeecchhhhhhcCC-cchhhhHHHHHHHHHccccceecCcccCcchhHHHHHHHHhhCChhhee
Confidence 489999999999999999999999998887 4788888877789999999999999999999999999999999999999
Q ss_pred EEeccCcCCCCCccccccCCHHHHHHHHHHHHHHcCCCcccEEEecCCCCC----CCHHHHHHHHHHHHHcCCccEEecC
Q 024050 87 VATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS----VPIEETIGEMKKLVEEGKIKYIGLS 162 (273)
Q Consensus 87 i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~----~~~~~~~~~L~~l~~~G~ir~iGvS 162 (273)
|+||++....+ .....+++++.+++++++|||||++||+|++++|+.+.. ..+.|++.+|+++|++||||+||++
T Consensus 100 IaTKvgRy~ld-~~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap~ld~vl~Etlp~Le~lk~~Gk~RfiGit 178 (342)
T KOG1576|consen 100 IATKVGRYELD-YANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAPNLDIVLNETLPALEELKQEGKIRFIGIT 178 (342)
T ss_pred eeeeeeecccC-ccccccchHHHHHHHHHHHHHHhCCceeEEEEeecccccccccHHHHHHHHHHHHHHhcCceeEeeec
Confidence 99999876532 234578999999999999999999999999999998754 3367999999999999999999999
Q ss_pred CCCHHHHHHHhhcC--CceEEe--eecccccccccccHHHHHHHhCCeEEecccCCCccCCCCCCCCCCCCchhhhhccC
Q 024050 163 EASPGTIRRAHAVH--PITAVQ--MEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVENVPADSFLVQRRE 238 (273)
Q Consensus 163 ~~~~~~l~~~~~~~--~~~~~q--~~~~l~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~ 238 (273)
.++.+.+.++.+.. .++++- ..|++.+... -..+++.+.+|++|+.-++++.|+|+...++++.|.++..+.-
T Consensus 179 gypldvl~~~ae~~~G~~dvvlsY~ry~l~d~tL-l~~~~~~~sk~vgVi~AsalsmgLLt~~gp~~wHPaS~Elk~~-- 255 (342)
T KOG1576|consen 179 GYPLDVLTECAERGKGRLDVVLSYCRYTLNDNTL-LRYLKRLKSKGVGVINASALSMGLLTNQGPPPWHPASDELKEA-- 255 (342)
T ss_pred ccchHHHHHHHhcCCCceeeehhhhhhccccHHH-HHHHHHHHhcCceEEehhhHHHHHhhcCCCCCCCCCCHHHHHH--
Confidence 99999999988763 455554 5666666543 6678888999999999999999999999888899987765443
Q ss_pred chhHHHHHHhcCCChHHHHHHhhhcCCCcccccCC
Q 024050 239 PGQEQEYLFSHREPCQKVQLHFCSTSPSMGSRTGG 273 (273)
Q Consensus 239 ~~~~~~~~~~~~~~~~q~aL~~~l~~p~v~s~~~g 273 (273)
..+..++|.+.++.++.+|+.|+++.|.++++.+|
T Consensus 256 a~~aa~~Cq~rnv~l~kLA~~Yam~~~~~~~~lvG 290 (342)
T KOG1576|consen 256 AKAAAEYCQSRNVELGKLAMYYAMSLPGVSTVLVG 290 (342)
T ss_pred HHHHHHHHHHcCccHHHHHHHHHHccCCcceEEec
Confidence 33456899999999999999999999999999887
No 14
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=6.9e-50 Score=340.09 Aligned_cols=222 Identities=29% Similarity=0.409 Sum_probs=196.9
Q ss_pred cccCCCCCcccCcceeccccCCCCCCCCCCHHHHHHHHHHHHHCCCCccccccCCCCCcHHHHHHHHHhc------CCCC
Q 024050 10 RVKLGTQGLEVSKLGYGCMNLSGGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ------LPRE 83 (273)
Q Consensus 10 ~r~lg~sg~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~se~~lg~~l~~------~~r~ 83 (273)
..+| ++|.++|.||||||+. +..++.++++.|++.|+|+||||..|+ ||+.+|++|++ .+|+
T Consensus 6 ~~~L-n~G~~mP~iGlGTw~~--------~~~~~~~aV~~Al~~GYRHIDtA~~Y~---NE~evG~aik~~i~~~~v~Re 73 (300)
T KOG1577|consen 6 TVKL-NNGFKMPIIGLGTWQS--------PPGQVAEAVKAAIKAGYRHIDTAHVYG---NEKEVGEAIKELLAEGGVKRE 73 (300)
T ss_pred eEec-cCCCccceeeeEeccc--------ChhhHHHHHHHHHHhCcceeechhhhC---ChHHHHHHHHHHhhhCCcchh
Confidence 5788 8999999999999972 678999999999999999999999998 99999999995 6899
Q ss_pred CEEEEeccCcCCCCCccccccCCHHHHHHHHHHHHHHcCCCcccEEEecCCCCC----------------CCHHHHHHHH
Q 024050 84 KIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS----------------VPIEETIGEM 147 (273)
Q Consensus 84 ~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~----------------~~~~~~~~~L 147 (273)
++||+||+++.. ..++.++.++++||++||+||+|||++|||-.. .+..++|++|
T Consensus 74 diFiTSKlw~~~---------~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k~~~~~~~~~~~~~~~~~~~~tW~am 144 (300)
T KOG1577|consen 74 DIFITSKLWPTD---------HAPELVEKALEKSLKKLQLDYVDLYLIHWPVAFKDSFPKDENGKVNYDDVDRIETWKAM 144 (300)
T ss_pred hheeeeccCccc---------cChhhHHHHHHHHHHHhChhhhheeeEecccccCCCCCcccccccccccchHHHHHHHH
Confidence 999999999764 458899999999999999999999999999653 3467899999
Q ss_pred HHHHHcCCccEEecCCCCHHHHHHHhhc--CCceEEeeecccccccccccHHHHHHHhCCeEEecccCCCccCCCCCCCC
Q 024050 148 KKLVEEGKIKYIGLSEASPGTIRRAHAV--HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVE 225 (273)
Q Consensus 148 ~~l~~~G~ir~iGvS~~~~~~l~~~~~~--~~~~~~q~~~~l~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~ 225 (273)
+++++.|++|+||||||+..+|+++++. .+|.++|+++|++-++ .+++++|+++||.|.|||||+.+-- +
T Consensus 145 E~~~~~Gl~rsIGVSNF~~~~le~ll~~~ki~P~vnQvE~HP~~~Q--~~L~~fCk~~~I~v~AYSpLg~~~~-~----- 216 (300)
T KOG1577|consen 145 EKLVDEGLVRSIGVSNFNIKQLEELLNLAKIKPAVNQVECHPYLQQ--KKLVEFCKSKGIVVTAYSPLGSPGR-G----- 216 (300)
T ss_pred HHHHHcCCceEeeeecCCHHHHHHHHhcCCCCCccceeeccCCcCh--HHHHHHHhhCCcEEEEecCCCCCCC-c-----
Confidence 9999999999999999999999999987 6899999999998886 6799999999999999999996642 0
Q ss_pred CCCCchhhhhccCchhHHHHHHhcCCChHHHHHHhhhcCCCcc
Q 024050 226 NVPADSFLVQRREPGQEQEYLFSHREPCQKVQLHFCSTSPSMG 268 (273)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~aL~~~l~~p~v~ 268 (273)
. .-...+.+.++|++|++|++|++|+|++++..+.
T Consensus 217 ~--------~ll~~~~l~~iA~K~~kt~aQIlLrw~~q~g~~v 251 (300)
T KOG1577|consen 217 S--------DLLEDPVLKEIAKKYNKTPAQILLRWALQRGVSV 251 (300)
T ss_pred c--------ccccCHHHHHHHHHhCCCHHHHHHHHHHhCCcEE
Confidence 0 1122455789999999999999999999986543
No 15
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=5.2e-48 Score=335.13 Aligned_cols=220 Identities=26% Similarity=0.315 Sum_probs=190.9
Q ss_pred ccCCCCCcccCcceeccccCCCCCCCCCCHHHHHHHHHHHHHCCCCccccccCCCCCcHHHHHHHHHhc--CCCCCEEEE
Q 024050 11 VKLGTQGLEVSKLGYGCMNLSGGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ--LPREKIQVA 88 (273)
Q Consensus 11 r~lg~sg~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~se~~lg~~l~~--~~r~~~~i~ 88 (273)
.+| ++|++||.||||||++ +.+++.++|++|++.|+|+||||+.|| +|+.+|++|+. .+|++++|+
T Consensus 7 ~~l-~~g~~v~~lglG~~~~--------~~~~~~~~l~~A~~~Gi~~~DTA~~Yg---~E~~lG~al~~~~~~R~~~~i~ 74 (275)
T PRK11565 7 IKL-QDGNVMPQLGLGVWQA--------SNEEVITAIHKALEVGYRSIDTAAIYK---NEEGVGKALKEASVAREELFIT 74 (275)
T ss_pred EEc-CCCCccCCcceECccC--------CHHHHHHHHHHHHHhCCCEEEchhhhC---CHHHHHHHHHHcCCCHHHEEEE
Confidence 557 8899999999999974 468899999999999999999999998 79999999986 469999999
Q ss_pred eccCcCCCCCccccccCCHHHHHHHHHHHHHHcCCCcccEEEecCCCCCC-CHHHHHHHHHHHHHcCCccEEecCCCCHH
Q 024050 89 TKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSV-PIEETIGEMKKLVEEGKIKYIGLSEASPG 167 (273)
Q Consensus 89 tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~-~~~~~~~~L~~l~~~G~ir~iGvS~~~~~ 167 (273)
||++.. +++.+++++++||+||++||||+|++|+|+... +..++|++|++|+++|+||+||||||+++
T Consensus 75 tK~~~~-----------~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~ 143 (275)
T PRK11565 75 TKLWND-----------DHKRPREALEESLKKLQLDYVDLYLMHWPVPAIDHYVEAWKGMIELQKEGLIKSIGVCNFQIH 143 (275)
T ss_pred EEecCc-----------chHHHHHHHHHHHHHhCCCceEEEEecCCCCCcCcHHHHHHHHHHHHHcCCeeEEeeccCCHH
Confidence 998532 367899999999999999999999999998753 47899999999999999999999999999
Q ss_pred HHHHHhhc--CCceEEeeecccccccccccHHHHHHHhCCeEEecccCCCccCCCCCCCCCCCCchhhhhccCchhHHHH
Q 024050 168 TIRRAHAV--HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVENVPADSFLVQRREPGQEQEY 245 (273)
Q Consensus 168 ~l~~~~~~--~~~~~~q~~~~l~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (273)
++++++.. ..+.++|++||++.+. .+++++|+++||.+++|+||++|.. + ....+.+.++
T Consensus 144 ~l~~~~~~~~v~~~~~Q~~~~~~~~~--~~~~~~~~~~~i~~~a~spl~~G~~-~---------------~~~~~~l~~i 205 (275)
T PRK11565 144 HLQRLIDETGVTPVINQIELHPLMQQ--RQLHAWNATHKIQTESWSPLAQGGK-G---------------VFDQKVIRDL 205 (275)
T ss_pred HHHHHHHhCCCCceeeeeecCCccch--HHHHHHHHHCCCEEEEEccCCCCCc-c---------------cccCHHHHHH
Confidence 99988754 3578999999999875 5799999999999999999997631 0 0112457789
Q ss_pred HHhcCCChHHHHHHhhhcCCCcccccCC
Q 024050 246 LFSHREPCQKVQLHFCSTSPSMGSRTGG 273 (273)
Q Consensus 246 ~~~~~~~~~q~aL~~~l~~p~v~s~~~g 273 (273)
|.++|+|++|+||+|++++|.+ +++|
T Consensus 206 a~~~g~s~aq~aL~w~l~~~~~--~I~g 231 (275)
T PRK11565 206 ADKYGKTPAQIVIRWHLDSGLV--VIPK 231 (275)
T ss_pred HHHhCCCHHHHHHHHHHcCCCE--eeCC
Confidence 9999999999999999999865 4554
No 16
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=2.1e-48 Score=318.20 Aligned_cols=253 Identities=26% Similarity=0.360 Sum_probs=218.9
Q ss_pred CCcccCCCCCcccCcceeccccCCCCCCCCCCHHHHHHHHHHHHHCCCCccccccCCCCCcHHHHHHHHHhc--CCCCCE
Q 024050 8 VPRVKLGTQGLEVSKLGYGCMNLSGGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ--LPREKI 85 (273)
Q Consensus 8 m~~r~lg~sg~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~se~~lg~~l~~--~~r~~~ 85 (273)
|++.+|++.++++|++.+|+|++.. |+ ++..+....++.|+|.|||+||-|+.||.+..|+++|.+|+- ..|+++
T Consensus 1 m~rI~l~~~~~e~Sriv~G~wRl~d-~~--~~~~e~~~~Ie~~le~Gitt~DhADIYGgy~cE~~fg~aL~l~p~lReki 77 (298)
T COG4989 1 MQRITLAPDGLEFSRIVLGYWRLND-WN--MSARELLSFIETALELGITTFDHADIYGGYQCEALFGEALKLAPGLREKI 77 (298)
T ss_pred CceEEecCCCccHHHHHHHHHhhhh-cc--CCHHHHHHHHHHHHHcCcccchhhhhcCCccHHHHHHHHHhcChhhhhhe
Confidence 6789999999999999999999875 43 467899999999999999999999999999999999999986 569999
Q ss_pred EEEeccCcCCCCC---ccccccCCHHHHHHHHHHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEecC
Q 024050 86 QVATKFGIAGIGV---AGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS 162 (273)
Q Consensus 86 ~i~tK~~~~~~~~---~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS 162 (273)
.|.||++...+.. ...+.+.+.++|.+++++||++|+|||+|+++||+||+..+.+|+.+|+..|+++||||++|||
T Consensus 78 eivsKCGI~~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDpLmd~eeVAeAf~~L~~sGKVr~fGVS 157 (298)
T COG4989 78 EIVSKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDPLMDAEEVAEAFTHLHKSGKVRHFGVS 157 (298)
T ss_pred EeeeccccccccccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCcccCCHHHHHHHHHHHHhcCCeeeeecC
Confidence 9999999776432 1235678999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHhhc--CCceEEeeecccccccc-cccHHHHHHHhCCeEEecccCCCccCCCCCCCCCCCCchhhhhccCc
Q 024050 163 EASPGTIRRAHAV--HPITAVQMEWSLWTRDI-EEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVENVPADSFLVQRREP 239 (273)
Q Consensus 163 ~~~~~~l~~~~~~--~~~~~~q~~~~l~~~~~-~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~ 239 (273)
||++.+++-+-.. .+++++|++.|++.... ..+.+++|+++.|.++|||||++|-++.. .+. .....
T Consensus 158 Nf~p~Q~~LL~s~l~~~LvtNQlelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~gG~~F~g--~~~--------~q~l~ 227 (298)
T COG4989 158 NFNPAQFELLQSRLPFTLVTNQLELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLGGGGLFLG--DDK--------FQRLR 227 (298)
T ss_pred CCCHHHHHHHHHhccchhhhcceeeccccccccccchHHHHHHcCCCcccccccCCCccccC--Ccc--------hHHHH
Confidence 9999998877665 46899999999998763 37899999999999999999999855532 111 11223
Q ss_pred hhHHHHHHhcC-CChHHHHHHhhhcCCCcccccCC
Q 024050 240 GQEQEYLFSHR-EPCQKVQLHFCSTSPSMGSRTGG 273 (273)
Q Consensus 240 ~~~~~~~~~~~-~~~~q~aL~~~l~~p~v~s~~~g 273 (273)
..++.++.+.| .+.++++++|++.+|.=--+++|
T Consensus 228 ~~l~~ia~e~ga~s~~~VaiAWllR~Pa~~~PiiG 262 (298)
T COG4989 228 KVLDRIAEEYGAVSITAVAIAWLLRHPAKPQPIIG 262 (298)
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHhCcCcccceec
Confidence 45789999999 79999999999999975555544
No 17
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=100.00 E-value=1.8e-47 Score=328.80 Aligned_cols=241 Identities=27% Similarity=0.376 Sum_probs=212.8
Q ss_pred CCcccCCCCCcccCcceeccccCCCCCCCCCCHHHHHHHHHHHHHCCCCccccccCCCCCcHHHHHHHHHhcCCCCCEEE
Q 024050 8 VPRVKLGTQGLEVSKLGYGCMNLSGGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQV 87 (273)
Q Consensus 8 m~~r~lg~sg~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~se~~lg~~l~~~~r~~~~i 87 (273)
|.||++|++|.++|.+|||||++...+...++.+.+.++|++|+++|||+||||..|+.|.||..+|++|++.+|++|++
T Consensus 1 Mlyr~~~k~g~~~s~lgfG~MRlp~~~~~~id~~~~~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~~~Rekv~L 80 (391)
T COG1453 1 MLYRKFPKTGDELSILGFGCMRLPLKEQGSIDEENANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKDGYREKVKL 80 (391)
T ss_pred CchhhcCCCCcccceeccceeecccccCCCccHHHHHHHHHHHHHcCCceEeecccccCCCchHHHHHHhhhcccceEEE
Confidence 78999999999999999999999876666779999999999999999999999999988899999999999988999999
Q ss_pred EeccCcCCCCCccccccCCHHHHHHHHHHHHHHcCCCcccEEEecCCCCCCCHH-----HHHHHHHHHHHcCCccEEecC
Q 024050 88 ATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIE-----ETIGEMKKLVEEGKIKYIGLS 162 (273)
Q Consensus 88 ~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~-----~~~~~L~~l~~~G~ir~iGvS 162 (273)
+||++.... -+++.+++-++++|++|++||+|+|+||..+.. ..+ ..++.+++++++|+||++|+|
T Consensus 81 aTKlp~~~~--------~~~edm~r~fneqLekl~~Dy~D~yliH~l~~e-~~~k~~~~g~~df~~kak~eGkIr~~GFS 151 (391)
T COG1453 81 ATKLPSWPV--------KDREDMERIFNEQLEKLGTDYIDYYLIHGLNTE-TWEKIERLGVFDFLEKAKAEGKIRNAGFS 151 (391)
T ss_pred EeecCCccc--------cCHHHHHHHHHHHHHHhCCchhhhhhhccccHH-HHHHHHccChHHHHHHHHhcCcEEEeeec
Confidence 999985431 358899999999999999999999999999773 222 369999999999999999999
Q ss_pred CCC-HHHHHHHhhcCCceEEeeeccccccccc--ccHHHHHHHhCCeEEecccCCCccCCCCCCCCCCCCchhhhhccCc
Q 024050 163 EAS-PGTIRRAHAVHPITAVQMEWSLWTRDIE--EEIIPLCRELGIGIVPYSPLGRGFFGGKAVVENVPADSFLVQRREP 239 (273)
Q Consensus 163 ~~~-~~~l~~~~~~~~~~~~q~~~~l~~~~~~--~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~ 239 (273)
.|+ .+.+.+++...+++++|++||.++.... .+.+++|.++|++|+.++|+.+|-|... + +
T Consensus 152 fHgs~e~~~~iv~a~~~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~~gG~l~~~-----v-----------P 215 (391)
T COG1453 152 FHGSTEVFKEIVDAYPWDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPLDGGGLLYN-----V-----------P 215 (391)
T ss_pred CCCCHHHHHHHHhcCCcceEEeeeeeeccchhcccHHHHHHHhCCCcEEEEeeCCCCCcccC-----C-----------C
Confidence 985 5789999999999999999999998754 4899999999999999999999987742 1 2
Q ss_pred hhHHHHHHhcC--CChHHHHHHhhhcCCCcccccCC
Q 024050 240 GQEQEYLFSHR--EPCQKVQLHFCSTSPSMGSRTGG 273 (273)
Q Consensus 240 ~~~~~~~~~~~--~~~~q~aL~~~l~~p~v~s~~~g 273 (273)
..+++++...+ .|+...|++|++++|.|+++.+|
T Consensus 216 ~~~~~l~~~~~~~~sP~~wa~R~~~shp~V~~vlsG 251 (391)
T COG1453 216 EKLEELCRPASPKRSPAEWALRYLLSHPEVTTVLSG 251 (391)
T ss_pred HHHHHHHHhcCCCCCcHHHHHHHHhcCCCeEEEecC
Confidence 23456666554 57888999999999999999987
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=98.17 E-value=4.4e-06 Score=69.11 Aligned_cols=71 Identities=17% Similarity=0.200 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHcCCccEEecCCCCHHHHHHHhhcC--CceEEeeecccccccccccHHHHHHHhCCeEEecc
Q 024050 140 IEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVH--PITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYS 211 (273)
Q Consensus 140 ~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~--~~~~~q~~~~l~~~~~~~~l~~~~~~~gi~v~a~s 211 (273)
+.+.|+.|++++.+|+|..||||.|++.+|++++... .|.++|+...-...-+ .++.++|.+|+|.+...+
T Consensus 155 lkplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saqVvP~snqVnL~~cCvvP-pdLqafa~~hdiQLltHs 227 (285)
T KOG3023|consen 155 LKPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQVVPESNQVNLGQCCVVP-PDLQAFADRHDIQLLTHS 227 (285)
T ss_pred HHHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhccccccceeeccccccCC-HHHHHHhhhcceeeeecC
Confidence 3468999999999999999999999999999999884 5667777655554444 789999999999999875
No 19
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=94.95 E-value=0.91 Score=40.15 Aligned_cols=155 Identities=11% Similarity=0.066 Sum_probs=96.0
Q ss_pred CHHHHHHHHHHHHHCCCCccccccCCCCC-cHHHHHHHHHhcCCCCCEEEEeccCcCCCCCccccccCCHHHHHHHHHHH
Q 024050 39 SEEDGISMIKHAFSKGITFFDTADVYGQN-ANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEAS 117 (273)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g-~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~s 117 (273)
+.++..+.++.+.+.|++.|+.-- |.. ..+...=+.+++.-. ++-|.-+.... ++.+... .+-+.
T Consensus 134 ~~~~~~~~~~~~~~~Gf~~iKik~--g~~~~~d~~~v~~lr~~~g-~~~l~vD~n~~----------~~~~~A~-~~~~~ 199 (316)
T cd03319 134 TPEAMAAAAKKAAKRGFPLLKIKL--GGDLEDDIERIRAIREAAP-DARLRVDANQG----------WTPEEAV-ELLRE 199 (316)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEe--CCChhhHHHHHHHHHHhCC-CCeEEEeCCCC----------cCHHHHH-HHHHH
Confidence 567788888999999999998753 211 122222234443222 56676665422 2333322 23334
Q ss_pred HHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCcc-EEecCCCCHHHHHHHhhcCCceEEeeeccccccc-cccc
Q 024050 118 LKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRD-IEEE 195 (273)
Q Consensus 118 L~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~~l~~~~-~~~~ 195 (273)
|+.++ +.++..|-.. +-++.+.+|++...+. ..|=+-++.+.+.++++....+++|+..+..--- .-..
T Consensus 200 l~~~~-----l~~iEeP~~~----~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~~~d~v~~~~~~~GGi~~~~~ 270 (316)
T cd03319 200 LAELG-----VELIEQPVPA----GDDDGLAYLRDKSPLPIMADESCFSAADAARLAGGGAYDGINIKLMKTGGLTEALR 270 (316)
T ss_pred HHhcC-----CCEEECCCCC----CCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcCCCCEEEEeccccCCHHHHHH
Confidence 45444 4444444322 2466777888877766 2344557888999999988899999977665321 1267
Q ss_pred HHHHHHHhCCeEEecccCCCc
Q 024050 196 IIPLCRELGIGIVPYSPLGRG 216 (273)
Q Consensus 196 l~~~~~~~gi~v~a~spl~~G 216 (273)
+...|+++|+.++..+-+..+
T Consensus 271 ~~~~a~~~gi~~~~~~~~~~~ 291 (316)
T cd03319 271 IADLARAAGLKVMVGCMVESS 291 (316)
T ss_pred HHHHHHHcCCCEEEECchhhH
Confidence 899999999999987555433
No 20
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=92.54 E-value=2.8 Score=37.62 Aligned_cols=154 Identities=12% Similarity=0.093 Sum_probs=92.0
Q ss_pred CHHHHHHHHHHHHHCCCCccccccCCCC-----CcHHHHHHHHHhcCCCCCEEEEeccCcCCCCCccccccCCHHHHHHH
Q 024050 39 SEEDGISMIKHAFSKGITFFDTADVYGQ-----NANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSC 113 (273)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~-----g~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~ 113 (273)
+.++..+.++.+.+.|++.|-.--..+. -+-...+=+.+++.-.+++.|...... .++.+...
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v~~ir~~~g~~~~l~vDaN~----------~~~~~~a~-- 206 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARVRAVREAVGPDVDLMVDANG----------RWDLAEAI-- 206 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHHHHHHHhhCCCCEEEEECCC----------CCCHHHHH--
Confidence 4677888888889999998765322211 011122223444322345555555421 13444333
Q ss_pred HHHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCcc-EEecCCCCHHHHHHHhhcCCceEEeeecccccccc
Q 024050 114 CEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRDI 192 (273)
Q Consensus 114 ~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~~l~~~~~ 192 (273)
+.+++|. ..++.+++.|-.. +.++.+.++++.-.+. ..|=|.++++.++++++....+++|+..+..---.
T Consensus 207 --~~~~~l~--~~~i~~iEqP~~~----~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~ 278 (357)
T cd03316 207 --RLARALE--EYDLFWFEEPVPP----DDLEGLARLRQATSVPIAAGENLYTRWEFRDLLEAGAVDIIQPDVTKVGGIT 278 (357)
T ss_pred --HHHHHhC--ccCCCeEcCCCCc----cCHHHHHHHHHhCCCCEEeccccccHHHHHHHHHhCCCCEEecCccccCCHH
Confidence 3333332 2345556666432 2567777888776555 33335578899999998888889998766653211
Q ss_pred -cccHHHHHHHhCCeEEeccc
Q 024050 193 -EEEIIPLCRELGIGIVPYSP 212 (273)
Q Consensus 193 -~~~l~~~~~~~gi~v~a~sp 212 (273)
-..+...|+++|+.++..+.
T Consensus 279 ~~~~i~~~a~~~g~~~~~~~~ 299 (357)
T cd03316 279 EAKKIAALAEAHGVRVAPHGA 299 (357)
T ss_pred HHHHHHHHHHHcCCeEeccCC
Confidence 16799999999999887754
No 21
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=90.93 E-value=1.7 Score=40.15 Aligned_cols=109 Identities=19% Similarity=0.276 Sum_probs=71.5
Q ss_pred cCcceeccccCCC----CCCCCCCHHHHHHHHHHHHHCCCCccccccCCCCCcHHHHHHHHHhcCCCCCEEEEeccCcCC
Q 024050 20 VSKLGYGCMNLSG----GYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAG 95 (273)
Q Consensus 20 vs~lglG~~~~~~----~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~se~~lg~~l~~~~r~~~~i~tK~~~~~ 95 (273)
|-++++|..+|.. ..|+.-+.+++..+++.+.+.|+.-|-.-=.|| .
T Consensus 148 vNRiSlGVQsf~~~~lk~lgR~h~~~~~~~a~~~~~~~g~~~in~DLIyg--------------l--------------- 198 (416)
T COG0635 148 VNRISLGVQSFNDEVLKALGRIHDEEEAKEAVELARKAGFTSINIDLIYG--------------L--------------- 198 (416)
T ss_pred CCEEEeccccCCHHHHHHhcCCCCHHHHHHHHHHHHHcCCCcEEEEeecC--------------C---------------
Confidence 3488888877754 124444677888888888888877665555665 1
Q ss_pred CCCccccccCCHHHHHHHHHHHHHHcCCCcccEEEec-CCCCC----------CCH----HHHHHHH-HHHHHcCCccEE
Q 024050 96 IGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQH-RVDTS----------VPI----EETIGEM-KKLVEEGKIKYI 159 (273)
Q Consensus 96 ~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh-~~~~~----------~~~----~~~~~~L-~~l~~~G~ir~i 159 (273)
|..+.+.+.+.+++.++ |+.|+|.+|.+- -|... .|. .+.++.. +.|.+.|. +.+
T Consensus 199 -------P~QT~~~~~~~l~~a~~-l~pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~~~Gy-~~y 269 (416)
T COG0635 199 -------PGQTLESLKEDLEQALE-LGPDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLEKAGY-RQY 269 (416)
T ss_pred -------CCCCHHHHHHHHHHHHh-CCCCEEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHHHCCC-cEE
Confidence 11356777777777766 779999999884 44211 111 1344443 55667777 899
Q ss_pred ecCCCCH
Q 024050 160 GLSEASP 166 (273)
Q Consensus 160 GvS~~~~ 166 (273)
|+|||.-
T Consensus 270 eisnfa~ 276 (416)
T COG0635 270 EISNFAK 276 (416)
T ss_pred eechhcC
Confidence 9999975
No 22
>PRK08392 hypothetical protein; Provisional
Probab=89.98 E-value=7.8 Score=32.20 Aligned_cols=149 Identities=17% Similarity=0.143 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHCCCCccccccCCCCCcHHHHHHHHHhc---C-CCCCE--EEEeccCcCCCCCccccccCCHHHHHHHH
Q 024050 41 EDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ---L-PREKI--QVATKFGIAGIGVAGVIVKGAPDYVRSCC 114 (273)
Q Consensus 41 ~~~~~~l~~A~~~Gin~~DtA~~Yg~g~se~~lg~~l~~---~-~r~~~--~i~tK~~~~~~~~~~~~~~~~~~~i~~~~ 114 (273)
....++++.|.+.|++.|=.+++......+ -+-..++. . .+.++ ++..-+... +.. .+..
T Consensus 14 ~~~~e~v~~A~~~Gl~~i~iTdH~~~~~~~-~~~~y~~~i~~l~~~~~i~il~GiE~~~~------------~~~-~~~~ 79 (215)
T PRK08392 14 GSVRDNIAEAERKGLRLVGISDHIHYFTPS-KFNAYINEIRQWGEESEIVVLAGIEANIT------------PNG-VDIT 79 (215)
T ss_pred CCHHHHHHHHHHcCCCEEEEccCCCccchh-hHHHHHHHHHHHhhccCceEEEeEEeeec------------CCc-chhH
Confidence 347789999999999988666665311111 12222221 1 12233 222222211 111 2233
Q ss_pred HHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEecCCC-------C-HHHHHHHhhc---CCceEEee
Q 024050 115 EASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEA-------S-PGTIRRAHAV---HPITAVQM 183 (273)
Q Consensus 115 ~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~-------~-~~~l~~~~~~---~~~~~~q~ 183 (273)
++.+++ .||+ +..+|.+.......+.++.+.++.+.+.+.-+|=-.. . .+.++++++. .. ..+
T Consensus 80 ~~~~~~--~D~v-I~SvH~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~~~~~~~g---~~l 153 (215)
T PRK08392 80 DDFAKK--LDYV-IASVHEWFGRPEHHEYIELVKLALMDENVDIIGHFGNSFPYIGYPSEEELKEILDLAEAYG---KAF 153 (215)
T ss_pred HHHHhh--CCEE-EEEeecCcCCcHHHHHHHHHHHHHhcCCCCEEeCCCccccCCCCchHHHHHHHHHHHHHhC---CEE
Confidence 344443 4666 6778954333335678889999999998777764321 1 1233333322 11 112
Q ss_pred ecccccccccccHHHHHHHhCCeEEe
Q 024050 184 EWSLWTRDIEEEIIPLCRELGIGIVP 209 (273)
Q Consensus 184 ~~~l~~~~~~~~l~~~~~~~gi~v~a 209 (273)
+.|-..+.+...+++.|++.|+.++.
T Consensus 154 EiNt~~~~p~~~~l~~~~~~G~~~~i 179 (215)
T PRK08392 154 EISSRYRVPDLEFIRECIKRGIKLTF 179 (215)
T ss_pred EEeCCCCCCCHHHHHHHHHcCCEEEE
Confidence 22221122235788999999876543
No 23
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=88.77 E-value=14 Score=31.59 Aligned_cols=157 Identities=15% Similarity=0.145 Sum_probs=93.6
Q ss_pred CHHHHHHHHHHHHHCCCCccccccCCCCCcHHHHHHHHHhcCCCCCEEEEeccCcCCCCCccccccCCHHHHHHHHHHHH
Q 024050 39 SEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASL 118 (273)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL 118 (273)
+.++..+.++.+.+.|++.|-.--.-.+ ..+...=+.+++.-.+++.|.-.... .++.+...+-+ +.|
T Consensus 85 ~~~~~~~~~~~~~~~G~~~~KiKvg~~~-~~d~~~v~~vr~~~g~~~~l~vDan~----------~~~~~~a~~~~-~~l 152 (265)
T cd03315 85 EPAEVAEEARRALEAGFRTFKLKVGRDP-ARDVAVVAALREAVGDDAELRVDANR----------GWTPKQAIRAL-RAL 152 (265)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCCH-HHHHHHHHHHHHhcCCCCEEEEeCCC----------CcCHHHHHHHH-HHH
Confidence 4577778888889999998875421111 12222233444422335545444321 13444333332 333
Q ss_pred HHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCcc-EEecCCCCHHHHHHHhhcCCceEEeeecccccccc-cccH
Q 024050 119 KRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRDI-EEEI 196 (273)
Q Consensus 119 ~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~~l~~~~~-~~~l 196 (273)
+.++ +.+++.|-.. +.++.+.++++.-.+. ..|=+-++++.+.++++...++++|+..+..---. -..+
T Consensus 153 ~~~~-----i~~iEeP~~~----~d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~~ 223 (265)
T cd03315 153 EDLG-----LDYVEQPLPA----DDLEGRAALARATDTPIMADESAFTPHDAFRELALGAADAVNIKTAKTGGLTKAQRV 223 (265)
T ss_pred HhcC-----CCEEECCCCc----ccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhCCCCEEEEecccccCHHHHHHH
Confidence 4444 4445555432 2356677777776555 33445578888999888888899999877654311 2678
Q ss_pred HHHHHHhCCeEEecccCCCc
Q 024050 197 IPLCRELGIGIVPYSPLGRG 216 (273)
Q Consensus 197 ~~~~~~~gi~v~a~spl~~G 216 (273)
...|+++|+.++..+.+..+
T Consensus 224 ~~~A~~~gi~~~~~~~~~s~ 243 (265)
T cd03315 224 LAVAEALGLPVMVGSMIESG 243 (265)
T ss_pred HHHHHHcCCcEEecCccchH
Confidence 99999999999987666544
No 24
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=88.49 E-value=16 Score=32.44 Aligned_cols=132 Identities=11% Similarity=0.006 Sum_probs=83.1
Q ss_pred CHHHHHHHHHHHHHCCCCcccc---cc-----CCCCC----cHHHHHHHHHhcC---CCCCEEEEeccCcCCCCCccccc
Q 024050 39 SEEDGISMIKHAFSKGITFFDT---AD-----VYGQN----ANEVLLGKALKQL---PREKIQVATKFGIAGIGVAGVIV 103 (273)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dt---A~-----~Yg~g----~se~~lg~~l~~~---~r~~~~i~tK~~~~~~~~~~~~~ 103 (273)
+.++..++...+.+.|+..||. ++ .||.| ..-+.+.+.++.. -..++-|+.|+.....
T Consensus 73 ~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~------- 145 (312)
T PRK10550 73 YPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWD------- 145 (312)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCC-------
Confidence 6788888888888999988883 22 25544 2334555555541 1225778888754320
Q ss_pred cCCHHHHHHHHHHHHHHcCCCcccEEEecCCCCCCCHHH---HHHHHHHHHHcCCccEEecCC-CCHHHHHHHhhcCCce
Q 024050 104 KGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEE---TIGEMKKLVEEGKIKYIGLSE-ASPGTIRRAHAVHPIT 179 (273)
Q Consensus 104 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~---~~~~L~~l~~~G~ir~iGvS~-~~~~~l~~~~~~~~~~ 179 (273)
+.+. ...+-+.++..| +|.+.+|.-........ -|+...++++.-.|--||.-. .+++..+++++....+
T Consensus 146 --~~~~-~~~~a~~l~~~G---vd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~~g~D 219 (312)
T PRK10550 146 --SGER-KFEIADAVQQAG---ATELVVHGRTKEDGYRAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITGCD 219 (312)
T ss_pred --CchH-HHHHHHHHHhcC---CCEEEECCCCCccCCCCCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhccCCC
Confidence 1122 235556677777 57778886544322111 367788888877788888777 4788888888766666
Q ss_pred EEee
Q 024050 180 AVQM 183 (273)
Q Consensus 180 ~~q~ 183 (273)
.+++
T Consensus 220 gVmi 223 (312)
T PRK10550 220 AVMI 223 (312)
T ss_pred EEEE
Confidence 6665
No 25
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=88.40 E-value=4.7 Score=34.36 Aligned_cols=105 Identities=17% Similarity=0.138 Sum_probs=68.0
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcC-CccEEecCCCCHHHHHHHhhcCCceEEee
Q 024050 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEG-KIKYIGLSEASPGTIRRAHAVHPITAVQM 183 (273)
Q Consensus 105 ~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G-~ir~iGvS~~~~~~l~~~~~~~~~~~~q~ 183 (273)
++.+...+-++ .|..+|+++|.+-..-.+.......+.++.++++.+.+ .++...++....+.++.+.+.. ++.+++
T Consensus 16 ~s~e~~~~i~~-~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~g-~~~i~i 93 (265)
T cd03174 16 FSTEDKLEIAE-ALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEAG-VDEVRI 93 (265)
T ss_pred CCHHHHHHHHH-HHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhCC-cCEEEE
Confidence 45555554444 47789999998887665533222356788888899888 5776677765566677766654 455666
Q ss_pred eccccc--------c------cccccHHHHHHHhCCeEEecc
Q 024050 184 EWSLWT--------R------DIEEEIIPLCRELGIGIVPYS 211 (273)
Q Consensus 184 ~~~l~~--------~------~~~~~l~~~~~~~gi~v~a~s 211 (273)
.+..-+ + +.....+++++++|+.+...-
T Consensus 94 ~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 135 (265)
T cd03174 94 FDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL 135 (265)
T ss_pred EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 554431 1 111567888899998877654
No 26
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=86.91 E-value=11 Score=30.83 Aligned_cols=149 Identities=12% Similarity=0.032 Sum_probs=84.8
Q ss_pred CHHHHHHHHHHHHHCCCCccccccCCCCCcHHHHHHHHHhcCCCCCEEEEeccCcCCCCCccccccCCHHHHHHHHHHHH
Q 024050 39 SEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASL 118 (273)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL 118 (273)
+.+++.+.++.|++.|++..|.-...- -..-..+|+... ++++++.-=. ...+.+++.+....
T Consensus 10 d~~~~~~~v~~~l~~g~~~~~i~~~~l-~p~m~~iG~~w~---~gei~va~~~-------------~a~~~~~~~l~~l~ 72 (197)
T TIGR02370 10 EEDDVVEGAQKALDAGIDPIELIEKGL-MAGMGVVGKLFE---DGELFLPHVM-------------MSADAMLAGIKVLT 72 (197)
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHHHc---CCCccHHHHH-------------HHHHHHHHHHHHHH
Confidence 789999999999999998776432110 012233444333 4454432111 12334455555544
Q ss_pred HHcCCC----cccEEEecCCCCCCCHHHHHHHHHHHHHcCC-ccEEecCCCCHHHHHHHhhcCCceEEeeeccccccccc
Q 024050 119 KRLDVD----YIDLYYQHRVDTSVPIEETIGEMKKLVEEGK-IKYIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRDIE 193 (273)
Q Consensus 119 ~~L~~d----~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~-ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~~l~~~~~~ 193 (273)
..+..+ .---+++-.+..+...-...-.-.-+...|. +.++|. +-+++.+.+......++++.+.+++......
T Consensus 73 ~~~~~~~~~~~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~-~vp~e~~v~~~~~~~pd~v~lS~~~~~~~~~ 151 (197)
T TIGR02370 73 PEMEKAVETEVLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGR-DVPIDTVVEKVKKEKPLMLTGSALMTTTMYG 151 (197)
T ss_pred HHhhccccCCCCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCC-CCCHHHHHHHHHHcCCCEEEEccccccCHHH
Confidence 444321 1123344444333333333333345666776 677784 4566777777888888888887776554333
Q ss_pred -ccHHHHHHHhCC
Q 024050 194 -EEIIPLCRELGI 205 (273)
Q Consensus 194 -~~l~~~~~~~gi 205 (273)
.++++.+++.|.
T Consensus 152 ~~~~i~~l~~~~~ 164 (197)
T TIGR02370 152 QKDINDKLKEEGY 164 (197)
T ss_pred HHHHHHHHHHcCC
Confidence 778888988854
No 27
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=85.59 E-value=29 Score=31.81 Aligned_cols=150 Identities=13% Similarity=0.113 Sum_probs=90.8
Q ss_pred CHHHHHHHHHHHHH-CCCCccccccCCCCCcHHHHHHHHHhc-CCCCCEEEEeccCcCCCCCccccccCCHHHHHHHHHH
Q 024050 39 SEEDGISMIKHAFS-KGITFFDTADVYGQNANEVLLGKALKQ-LPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEA 116 (273)
Q Consensus 39 ~~~~~~~~l~~A~~-~Gin~~DtA~~Yg~g~se~~lg~~l~~-~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (273)
+.++..+.++.+.+ .|++.|=.--.-.....+...=+++++ .+ ++.|..-... .++++. ..+
T Consensus 168 ~~e~~~~~a~~~~~~~Gf~~~KiKvG~~~~~~di~~v~avRea~~--~~~l~vDaN~----------~w~~~~----A~~ 231 (395)
T cd03323 168 TPEGVVRLARAAIDRYGFKSFKLKGGVLPGEEEIEAVKALAEAFP--GARLRLDPNG----------AWSLET----AIR 231 (395)
T ss_pred CHHHHHHHHHHHHHhcCCcEEEEecCCCCHHHHHHHHHHHHHhCC--CCcEEEeCCC----------CcCHHH----HHH
Confidence 56777777777775 699876432210000111222234443 32 3444443221 134443 333
Q ss_pred HHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCcc-EEecCCCCHHHHHHHhhcCCceEEeeecccccccc-cc
Q 024050 117 SLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRDI-EE 194 (273)
Q Consensus 117 sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~~l~~~~~-~~ 194 (273)
.+++|. + ++.++..|-. -++.+.+|++...+- ..|=|.++...+.++++..-++++|...+..---. -.
T Consensus 232 ~~~~l~-~--~l~~iEeP~~------d~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~~avdil~~d~~~~GGit~~~ 302 (395)
T cd03323 232 LAKELE-G--VLAYLEDPCG------GREGMAEFRRATGLPLATNMIVTDFRQLGHAIQLNAVDIPLADHHFWGGMRGSV 302 (395)
T ss_pred HHHhcC-c--CCCEEECCCC------CHHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHcCCCcEEeeccccccCHHHHH
Confidence 444553 2 6666666643 477888888887665 55656678888999888888899998776543211 16
Q ss_pred cHHHHHHHhCCeEEecccC
Q 024050 195 EIIPLCRELGIGIVPYSPL 213 (273)
Q Consensus 195 ~l~~~~~~~gi~v~a~spl 213 (273)
.+...|+++|+.+...+..
T Consensus 303 kia~~A~~~gi~~~~h~~~ 321 (395)
T cd03323 303 RVAQVCETWGLGWGMHSNN 321 (395)
T ss_pred HHHHHHHHcCCeEEEecCc
Confidence 7999999999999988765
No 28
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=84.97 E-value=4.2 Score=33.76 Aligned_cols=67 Identities=16% Similarity=0.213 Sum_probs=45.5
Q ss_pred HHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEecC-CCCHHHHHHHhhcCCceEEeeec
Q 024050 117 SLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS-EASPGTIRRAHAVHPITAVQMEW 185 (273)
Q Consensus 117 sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~q~~~ 185 (273)
....+|.|++-+++........+. +....+.+.. .+.++.+||. |-+++.+.++.+...++++|++-
T Consensus 16 ~~~~~GaD~iGfIf~~~SpR~V~~-~~a~~i~~~~-~~~~~~VgVf~~~~~~~i~~~~~~~~~d~vQLHG 83 (207)
T PRK13958 16 AASQLPIDAIGFIHYEKSKRHQTI-TQIKKLASAV-PNHIDKVCVVVNPDLTTIEHILSNTSINTIQLHG 83 (207)
T ss_pred HHHHcCCCEEEEecCCCCcccCCH-HHHHHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHhCCCCEEEECC
Confidence 345599999999754432222333 3333333332 3568889996 78899999999988999999965
No 29
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=84.47 E-value=25 Score=30.13 Aligned_cols=25 Identities=8% Similarity=0.177 Sum_probs=22.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCccccc
Q 024050 37 PVSEEDGISMIKHAFSKGITFFDTA 61 (273)
Q Consensus 37 ~~~~~~~~~~l~~A~~~Gin~~DtA 61 (273)
..+.++..++++...+.||..++..
T Consensus 18 ~~~~~~k~~i~~~L~~~Gv~~iEvg 42 (263)
T cd07943 18 QFTLEQVRAIARALDAAGVPLIEVG 42 (263)
T ss_pred ecCHHHHHHHHHHHHHcCCCEEEee
Confidence 4578999999999999999999987
No 30
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=84.39 E-value=27 Score=31.55 Aligned_cols=146 Identities=10% Similarity=0.049 Sum_probs=89.9
Q ss_pred CHHHHHHHHHHHHHCCCCccccccCCCCCcHHHHHHHHHhcCCCCCEEEEeccCcCCCCCccccccCCHHHHHHHHHHHH
Q 024050 39 SEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASL 118 (273)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL 118 (273)
+.++..+.++.+.+.|++.|=.-- .+.+ +++++.-.+++.|..-... .++.+.. .+.+
T Consensus 126 ~~~~~~~~a~~~~~~Gf~~~KiKv-------~~~v-~avre~~G~~~~l~vDaN~----------~w~~~~A----~~~~ 183 (361)
T cd03322 126 DIPELLEAVERHLAQGYRAIRVQL-------PKLF-EAVREKFGFEFHLLHDVHH----------RLTPNQA----ARFG 183 (361)
T ss_pred CHHHHHHHHHHHHHcCCCeEeeCH-------HHHH-HHHHhccCCCceEEEECCC----------CCCHHHH----HHHH
Confidence 456677778888889998664210 2222 2344322234444332211 1344432 2233
Q ss_pred HHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCcc-EEecCCCCHHHHHHHhhcCCceEEeeecccccccc-cccH
Q 024050 119 KRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRDI-EEEI 196 (273)
Q Consensus 119 ~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~~l~~~~~-~~~l 196 (273)
++|. .+++.++..|-+. +-++.+.+|++...+. ..|=|.+++..+..+++...++++|+..+..---. -..+
T Consensus 184 ~~l~--~~~l~~iEeP~~~----~d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~a~di~~~d~~~~GGit~~~~i 257 (361)
T cd03322 184 KDVE--PYRLFWMEDPTPA----ENQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQERLIDYIRTTVSHAGGITPARKI 257 (361)
T ss_pred HHhh--hcCCCEEECCCCc----ccHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhCCCCEEecCccccCCHHHHHHH
Confidence 3332 2466666666432 3477788888887765 56667788999999998888889998776543211 1678
Q ss_pred HHHHHHhCCeEEeccc
Q 024050 197 IPLCRELGIGIVPYSP 212 (273)
Q Consensus 197 ~~~~~~~gi~v~a~sp 212 (273)
.+.|+++|+.+...+.
T Consensus 258 a~~A~~~gi~~~~h~~ 273 (361)
T cd03322 258 ADLASLYGVRTGWHGP 273 (361)
T ss_pred HHHHHHcCCeeeccCC
Confidence 9999999999987644
No 31
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=83.54 E-value=6.3 Score=36.02 Aligned_cols=83 Identities=12% Similarity=0.161 Sum_probs=51.1
Q ss_pred CHHHHHHHHHHHHHCCCCccccccCCCCCcHHHHHHHHHhcCCCCCEEEEeccCcCCCCCccccccCCHHHHHHHHHHHH
Q 024050 39 SEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASL 118 (273)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL 118 (273)
+......++++|++.|++++|||.+.. ....+..- ..+..+.+..-+|..+ ..+--.....+++-.
T Consensus 77 p~~~~~~i~ka~i~~gv~yvDts~~~~---~~~~~~~~---a~~Agit~v~~~G~dP--------Gi~nv~a~~a~~~~~ 142 (389)
T COG1748 77 PPFVDLTILKACIKTGVDYVDTSYYEE---PPWKLDEE---AKKAGITAVLGCGFDP--------GITNVLAAYAAKELF 142 (389)
T ss_pred CchhhHHHHHHHHHhCCCEEEcccCCc---hhhhhhHH---HHHcCeEEEcccCcCc--------chHHHHHHHHHHHhh
Confidence 455566999999999999999998775 22222222 2244555555444322 232222333333333
Q ss_pred HHcCCCcccEEEecCCCCC
Q 024050 119 KRLDVDYIDLYYQHRVDTS 137 (273)
Q Consensus 119 ~~L~~d~iDl~~lh~~~~~ 137 (273)
+ .++++|+|..+.|++.
T Consensus 143 ~--~i~si~iy~g~~g~~~ 159 (389)
T COG1748 143 D--EIESIDIYVGGLGEHG 159 (389)
T ss_pred c--cccEEEEEEecCCCCC
Confidence 3 5899999999999876
No 32
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=83.49 E-value=23 Score=29.01 Aligned_cols=149 Identities=17% Similarity=0.128 Sum_probs=84.0
Q ss_pred CHHHHHHHHHHHHHCCCCccccccCCCCCcHHHHHHHHHhcCCCCCEEEEeccCcCCCCCccccccCCHHHHHHHHHHHH
Q 024050 39 SEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASL 118 (273)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL 118 (273)
+.+++.++++.|++.|+...|.-..+= -..-..+|+... ++++++.-=. ...+.+++.+....
T Consensus 9 D~~~~~~~v~~~l~~g~~~~~i~~~~l-~p~m~~vG~~w~---~~~i~va~e~-------------~as~~~~~~l~~l~ 71 (201)
T cd02070 9 DEEETVELVKKALEAGIDPQDIIEEGL-APGMDIVGDKYE---EGEIFVPELL-------------MAADAMKAGLDLLK 71 (201)
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHHHc---cCCeeHHHHH-------------HHHHHHHHHHHHHH
Confidence 789999999999999987665332110 012233444333 4454443211 11233444444444
Q ss_pred HHcCCCc---ccEEEecCCCCCCCHHHHHHHHHHHHHcCC-ccEEecCCCCHHHHHHHhhcCCceEEeeeccccccccc-
Q 024050 119 KRLDVDY---IDLYYQHRVDTSVPIEETIGEMKKLVEEGK-IKYIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRDIE- 193 (273)
Q Consensus 119 ~~L~~d~---iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~-ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~~l~~~~~~- 193 (273)
..+.... ---+++-.+..+...-...=.-.-|+..|. +.++| .+.+++.+.+......++++-+..++-.....
T Consensus 72 ~~~~~~~~~~~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG-~~~p~~~l~~~~~~~~~d~v~lS~~~~~~~~~~ 150 (201)
T cd02070 72 PLLGKSKSAKKGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLG-RDVPPEEFVEAVKEHKPDILGLSALMTTTMGGM 150 (201)
T ss_pred HHHhhcCCCCCCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECC-CCCCHHHHHHHHHHcCCCEEEEeccccccHHHH
Confidence 4443221 123444554444433333333345677887 46778 66677888888777788888887765554322
Q ss_pred ccHHHHHHHhCC
Q 024050 194 EEIIPLCRELGI 205 (273)
Q Consensus 194 ~~l~~~~~~~gi 205 (273)
.++++.+++.+.
T Consensus 151 ~~~i~~lr~~~~ 162 (201)
T cd02070 151 KEVIEALKEAGL 162 (201)
T ss_pred HHHHHHHHHCCC
Confidence 778888888753
No 33
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=83.45 E-value=13 Score=31.07 Aligned_cols=162 Identities=15% Similarity=0.220 Sum_probs=84.9
Q ss_pred CCHHHHHHHHHHHHHCCCCccccc-cCCCCCcHHHHHHHHHhcCCCCCEEEEeccCcCCCCCccccccCCHHHHHHHHHH
Q 024050 38 VSEEDGISMIKHAFSKGITFFDTA-DVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEA 116 (273)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gin~~DtA-~~Yg~g~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (273)
.+.++..++++...+.||..|+.. +..++ ...+.+.+..+..+...+...+. ...+.++..++.
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~--------------~~~~~i~~~~~~ 75 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGFPFASE-DDFEQVRRLREALPNARLQALCR--------------ANEEDIERAVEA 75 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEHCTSSH-HHHHHHHHHHHHHHSSEEEEEEE--------------SCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcccccCH-HHHHHhhhhhhhhcccccceeee--------------ehHHHHHHHHHh
Confidence 578999999999999999999999 33331 22333444443323333322222 225556666654
Q ss_pred HHHHcCCCcccEEEecCCCC---------CCCHHHHHHHHHHHHHcCCccEEecCC---CCHHHHHHHhhc---CCceEE
Q 024050 117 SLKRLDVDYIDLYYQHRVDT---------SVPIEETIGEMKKLVEEGKIKYIGLSE---ASPGTIRRAHAV---HPITAV 181 (273)
Q Consensus 117 sL~~L~~d~iDl~~lh~~~~---------~~~~~~~~~~L~~l~~~G~ir~iGvS~---~~~~~l~~~~~~---~~~~~~ 181 (273)
. ...|.+.+.++.--++.. ...++...+.++..++.|..-.+++.. ++++.+.++.+. ..++.+
T Consensus 76 ~-~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i 154 (237)
T PF00682_consen 76 A-KEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAGADII 154 (237)
T ss_dssp H-HHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEE
T ss_pred h-HhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcCCeEE
Confidence 4 467777777665332200 011344556667777888877777744 455554444332 123333
Q ss_pred ee--ecccccccccccHHHHHHHh----CCeEEecccCCC
Q 024050 182 QM--EWSLWTRDIEEEIIPLCREL----GIGIVPYSPLGR 215 (273)
Q Consensus 182 q~--~~~l~~~~~~~~l~~~~~~~----gi~v~a~spl~~ 215 (273)
.+ .+..+.+....++++..+++ .+++..+.-++.
T Consensus 155 ~l~Dt~G~~~P~~v~~lv~~~~~~~~~~~l~~H~Hnd~Gl 194 (237)
T PF00682_consen 155 YLADTVGIMTPEDVAELVRALREALPDIPLGFHAHNDLGL 194 (237)
T ss_dssp EEEETTS-S-HHHHHHHHHHHHHHSTTSEEEEEEBBTTS-
T ss_pred EeeCccCCcCHHHHHHHHHHHHHhccCCeEEEEecCCccc
Confidence 32 33344443235566666553 355555555543
No 34
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=83.05 E-value=0.5 Score=42.27 Aligned_cols=55 Identities=16% Similarity=0.283 Sum_probs=35.2
Q ss_pred HcCCccEEecCCCCHHHHHHHhhcCC-ceEEeeecccccccccccHHHHHHHhCCe
Q 024050 152 EEGKIKYIGLSEASPGTIRRAHAVHP-ITAVQMEWSLWTRDIEEEIIPLCRELGIG 206 (273)
Q Consensus 152 ~~G~ir~iGvS~~~~~~l~~~~~~~~-~~~~q~~~~l~~~~~~~~l~~~~~~~gi~ 206 (273)
=-|+|||+||--|+++.++++..... -+..+.+..++-......+++.|++.||.
T Consensus 262 CVGriRYlGVlLYDaDrv~eaAs~~~e~dly~~Q~~ifLDP~DP~Vi~~A~k~Gip 317 (513)
T COG1140 262 CVGRIRYLGVLLYDADRVEEAASTENEKDLYERQLDVFLDPHDPAVIEQARKDGIP 317 (513)
T ss_pred hhcceeeeeeeeecHHHHHHhhcCccHHHHHHHHHhhhcCCCCHHHHHHHHHcCCc
Confidence 45999999999999999988876521 22223333333222235677777777754
No 35
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=82.58 E-value=32 Score=29.94 Aligned_cols=151 Identities=13% Similarity=0.111 Sum_probs=91.0
Q ss_pred CHHHHHHHHHHHHHCCCCccccc----------cCCCCCcHHHHHHHHHhcCCCC-CEEEEeccCcCCCCCccccccCCH
Q 024050 39 SEEDGISMIKHAFSKGITFFDTA----------DVYGQNANEVLLGKALKQLPRE-KIQVATKFGIAGIGVAGVIVKGAP 107 (273)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~DtA----------~~Yg~g~se~~lg~~l~~~~r~-~~~i~tK~~~~~~~~~~~~~~~~~ 107 (273)
+.++..++.+.+.+.|+..||.- ..|+ .+.+.+-+.++...+. ++-|..|+.+..
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~--~~~~~~~eiv~~vr~~~~~Pv~vKl~~~~------------ 165 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFG--TDPEAVAEIVKAVKKATDVPVIVKLTPNV------------ 165 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCccccc--CCHHHHHHHHHHHHhccCCCEEEEeCCCc------------
Confidence 57888899999999999888762 1222 3556666666653222 677888986432
Q ss_pred HHHHHHHHHHHHHcCCCcccEEE------ecCCCC-------------CCCHHHHHHHHHHHHHcCCccEEecCCC-CHH
Q 024050 108 DYVRSCCEASLKRLDVDYIDLYY------QHRVDT-------------SVPIEETIGEMKKLVEEGKIKYIGLSEA-SPG 167 (273)
Q Consensus 108 ~~i~~~~~~sL~~L~~d~iDl~~------lh~~~~-------------~~~~~~~~~~L~~l~~~G~ir~iGvS~~-~~~ 167 (273)
+.+ ..+-+.++..|.|.|++.- +|.-.. .....-.++.+.++++.=.+-=||+... +++
T Consensus 166 ~~~-~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~~~~ 244 (296)
T cd04740 166 TDI-VEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIASGE 244 (296)
T ss_pred hhH-HHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCCCHH
Confidence 122 2334557788988777642 111000 0001125677777777656888888884 788
Q ss_pred HHHHHhhcCCceEEeeeccccc-cc----ccccHHHHHHHhCC
Q 024050 168 TIRRAHAVHPITAVQMEWSLWT-RD----IEEEIIPLCRELGI 205 (273)
Q Consensus 168 ~l~~~~~~~~~~~~q~~~~l~~-~~----~~~~l~~~~~~~gi 205 (273)
.+.+++... .+.+|+-=.++. +. ...++.++..++|.
T Consensus 245 da~~~l~~G-Ad~V~igra~l~~p~~~~~i~~~l~~~~~~~g~ 286 (296)
T cd04740 245 DALEFLMAG-ASAVQVGTANFVDPEAFKEIIEGLEAYLDEEGI 286 (296)
T ss_pred HHHHHHHcC-CCEEEEchhhhcChHHHHHHHHHHHHHHHHcCC
Confidence 888888765 577776333332 21 12556666777664
No 36
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=82.46 E-value=6.2 Score=32.30 Aligned_cols=102 Identities=14% Similarity=0.154 Sum_probs=69.6
Q ss_pred HHHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEecCCCCHHHHHHHhh-c-CCceEEeeeccccccc
Q 024050 114 CEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHA-V-HPITAVQMEWSLWTRD 191 (273)
Q Consensus 114 ~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~-~-~~~~~~q~~~~l~~~~ 191 (273)
+++.|..+.-+..|.+.+..- ...+....+.|+++..-|+--=|++.||.-+....-+- . .-|..-.++|+.++..
T Consensus 64 ld~gL~~f~d~sFD~VIlsqt--LQ~~~~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTP 141 (193)
T PF07021_consen 64 LDEGLADFPDQSFDYVILSQT--LQAVRRPDEVLEEMLRVGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTP 141 (193)
T ss_pred HHHhHhhCCCCCccEEehHhH--HHhHhHHHHHHHHHHHhcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCC
Confidence 344455555566666665432 11123445667888888887779999997665544333 2 3466678899988864
Q ss_pred cc-----ccHHHHHHHhCCeEEecccCCCcc
Q 024050 192 IE-----EEIIPLCRELGIGIVPYSPLGRGF 217 (273)
Q Consensus 192 ~~-----~~l~~~~~~~gi~v~a~spl~~G~ 217 (273)
.. .+..++|++.||.|.-..++..+.
T Consensus 142 Nih~~Ti~DFe~lc~~~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 142 NIHLCTIKDFEDLCRELGIRIEERVFLDGGR 172 (193)
T ss_pred CcccccHHHHHHHHHHCCCEEEEEEEEcCCC
Confidence 21 788999999999999999988654
No 37
>PRK08609 hypothetical protein; Provisional
Probab=82.43 E-value=33 Score=33.15 Aligned_cols=149 Identities=16% Similarity=0.196 Sum_probs=81.3
Q ss_pred HHHHHHHHHHCCCCccccccCCC-----CCcHHHHHHHHH------hc-CCCCCEEEEeccCcCCCCCccccccCCHHHH
Q 024050 43 GISMIKHAFSKGITFFDTADVYG-----QNANEVLLGKAL------KQ-LPREKIQVATKFGIAGIGVAGVIVKGAPDYV 110 (273)
Q Consensus 43 ~~~~l~~A~~~Gin~~DtA~~Yg-----~g~se~~lg~~l------~~-~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i 110 (273)
..++++.|.+.|+..|=.++|+. .|.+...+-..+ ++ ...=+|++..-+.... +..
T Consensus 351 leemv~~A~~~Gl~~i~iTdH~~~~~~~~~~~~~~l~~~~~ei~~l~~~~~~i~Il~GiEv~i~~------------~g~ 418 (570)
T PRK08609 351 IEEMVEACIAKGYEYMAITDHSQYLKVANGLTEERLLEQAEEIKALNEKYPEIDILSGIEMDILP------------DGS 418 (570)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCccccCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEEEEeecC------------Ccc
Confidence 56699999999999888887763 122333233222 22 1112333333332211 111
Q ss_pred HHHHHHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEecCC------CC--HHHHHHHhhc---CCce
Q 024050 111 RSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE------AS--PGTIRRAHAV---HPIT 179 (273)
Q Consensus 111 ~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~------~~--~~~l~~~~~~---~~~~ 179 (273)
..-.+..|+. .||+ +..+|++.. .+.++.++.+.++.+.|.+.-||=-. +. ...++++++. .. .
T Consensus 419 ~d~~~~~L~~--~D~v-I~SvH~~~~-~~~~~~~~~l~~a~~~~~~dILaHpd~rli~~~~~~~~d~~~i~~~a~~~G-~ 493 (570)
T PRK08609 419 LDYDDEVLAE--LDYV-IAAIHSSFS-QSEEEIMKRLENACRNPYVRLIAHPTGRLIGRRDGYDVNIDQLIELAKETN-T 493 (570)
T ss_pred hhhcHHHHHh--hCEE-EEEeecCCC-CCHHHHHHHHHHHhcCCCceEEECCCccccccCCCchHHHHHHHHHHHHhC-C
Confidence 2222334444 4666 777887532 44577888999999989887776443 11 1223333322 21 3
Q ss_pred EEeeecccccccccccHHHHHHHhCCeEE
Q 024050 180 AVQMEWSLWTRDIEEEIIPLCRELGIGIV 208 (273)
Q Consensus 180 ~~q~~~~l~~~~~~~~l~~~~~~~gi~v~ 208 (273)
++|++-+.+.......+++.|.+.|+.++
T Consensus 494 ~lEINa~~~r~~~~~~~~~~~~e~Gv~i~ 522 (570)
T PRK08609 494 ALELNANPNRLDLSAEHLKKAQEAGVKLA 522 (570)
T ss_pred EEEEcCCccccCccHHHHHHHHHcCCEEE
Confidence 45555544332233678889999888654
No 38
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=81.28 E-value=30 Score=29.59 Aligned_cols=106 Identities=13% Similarity=0.035 Sum_probs=64.1
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEecCCCCHHHHHHHhhc--CCceEEe
Q 024050 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAV--HPITAVQ 182 (273)
Q Consensus 105 ~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~--~~~~~~q 182 (273)
.+++.+.+..++.++ -|.|+||+-. .|......++..+.+..+++.-.+ -|.+-+++++.++++++. ... +-
T Consensus 23 ~~~d~~~~~A~~~~~-~GAdiIDIG~--~~~~~~~~ee~~r~v~~i~~~~~~-piSIDT~~~~v~e~aL~~~~G~~--iI 96 (252)
T cd00740 23 EDYDEALDVARQQVE-GGAQILDLNV--DYGGLDGVSAMKWLLNLLATEPTV-PLMLDSTNWEVIEAGLKCCQGKC--VV 96 (252)
T ss_pred CCHHHHHHHHHHHHH-CCCCEEEECC--CCCCCCHHHHHHHHHHHHHHhcCC-cEEeeCCcHHHHHHHHhhCCCCc--EE
Confidence 456777777777765 5999999865 343222223322332223322122 378888999999999987 433 33
Q ss_pred eeccccccc-ccccHHHHHHHhCCeEEecccCCCc
Q 024050 183 MEWSLWTRD-IEEEIIPLCRELGIGIVPYSPLGRG 216 (273)
Q Consensus 183 ~~~~l~~~~-~~~~l~~~~~~~gi~v~a~spl~~G 216 (273)
+..+....+ ....+++.++++|..++.+..-..|
T Consensus 97 NsIs~~~~~e~~~~~~~~~~~~~~~vV~m~~~~~g 131 (252)
T cd00740 97 NSINLEDGEERFLKVARLAKEHGAAVVVLAFDEQG 131 (252)
T ss_pred EeCCCCCCccccHHHHHHHHHhCCCEEEeccCCCC
Confidence 444443311 1256889999999999988544333
No 39
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=81.04 E-value=27 Score=31.46 Aligned_cols=156 Identities=9% Similarity=0.052 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHCC-CCccccccC-CCCCcHHHHHHHHHhcCCCCCEEEEeccCcCCCCCccccccCCHHHHHHHHHHH
Q 024050 40 EEDGISMIKHAFSKG-ITFFDTADV-YGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEAS 117 (273)
Q Consensus 40 ~~~~~~~l~~A~~~G-in~~DtA~~-Yg~g~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~s 117 (273)
.++..+.+..+++.| ++.|=.--. .+.....+.+ +++++.-.+++.|.-=... .++.+...+ +-+.
T Consensus 143 ~~~~~~~~~~~~~~G~f~~~KiKvg~~~~~~d~~~v-~avr~~~g~~~~l~iDaN~----------~~~~~~A~~-~~~~ 210 (365)
T cd03318 143 TERDIAEAEEMLEAGRHRRFKLKMGARPPADDLAHV-EAIAKALGDRASVRVDVNQ----------AWDESTAIR-ALPR 210 (365)
T ss_pred HHHHHHHHHHHHhCCCceEEEEEeCCCChHHHHHHH-HHHHHHcCCCcEEEEECCC----------CCCHHHHHH-HHHH
Confidence 445556667778888 887643210 0110122333 3444422234434332211 133433222 1233
Q ss_pred HHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCcc-EEecCCCCHHHHHHHhhcCCceEEeeecccccccc-ccc
Q 024050 118 LKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRDI-EEE 195 (273)
Q Consensus 118 L~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~~l~~~~~-~~~ 195 (273)
|+.+ ++.++..|-+. +.++.+.+|.++..+. .+|=|-++...+.++++...++++|+.....---. -..
T Consensus 211 l~~~-----~~~~iEeP~~~----~~~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~~~d~~~~d~~~~GGit~~~~ 281 (365)
T cd03318 211 LEAA-----GVELIEQPVPR----ENLDGLARLRSRNRVPIMADESVSGPADAFELARRGAADVFSLKIAKSGGLRRAQK 281 (365)
T ss_pred HHhc-----CcceeeCCCCc----ccHHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHhCCCCeEEEeecccCCHHHHHH
Confidence 3333 44455555332 3467788888876665 44556678888999888877888888766643211 167
Q ss_pred HHHHHHHhCCeEEecccCCCc
Q 024050 196 IIPLCRELGIGIVPYSPLGRG 216 (273)
Q Consensus 196 l~~~~~~~gi~v~a~spl~~G 216 (273)
+...|+++|+.++..+-+..+
T Consensus 282 ~~~~a~~~gi~~~~~~~~~s~ 302 (365)
T cd03318 282 VAAIAEAAGIALYGGTMLESS 302 (365)
T ss_pred HHHHHHHcCCceeecCcchhH
Confidence 899999999999865444333
No 40
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=79.90 E-value=15 Score=31.64 Aligned_cols=101 Identities=20% Similarity=0.145 Sum_probs=63.6
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEE-ecCCCCC-CCHHH----HHHHHHHHHHcCCccEEecCCCCHHHHHHHhhcCCc
Q 024050 105 GAPDYVRSCCEASLKRLDVDYIDLYY-QHRVDTS-VPIEE----TIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHPI 178 (273)
Q Consensus 105 ~~~~~i~~~~~~sL~~L~~d~iDl~~-lh~~~~~-~~~~~----~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~ 178 (273)
.+.+.+.+..++.+ .-|-|.||+-. --+|+.. .+.++ ....++.+++.-.+- |.+-+++++.++++++....
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~p-lSIDT~~~~v~e~al~~G~~ 98 (257)
T cd00739 21 LSLDKAVAHAEKMI-AEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVL-ISVDTFRAEVARAALEAGAD 98 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCc-EEEeCCCHHHHHHHHHhCCC
Confidence 34555555555554 45788899863 2345432 22233 333456666553443 88889999999999988633
Q ss_pred eEEeeecccccccccccHHHHHHHhCCeEEecc
Q 024050 179 TAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYS 211 (273)
Q Consensus 179 ~~~q~~~~l~~~~~~~~l~~~~~~~gi~v~a~s 211 (273)
. -+..+....+ .++++.++++|..++.+.
T Consensus 99 i--INdisg~~~~--~~~~~l~~~~~~~vV~m~ 127 (257)
T cd00739 99 I--INDVSGGSDD--PAMLEVAAEYGAPLVLMH 127 (257)
T ss_pred E--EEeCCCCCCC--hHHHHHHHHcCCCEEEEC
Confidence 2 3334444322 568999999999999954
No 41
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=79.78 E-value=11 Score=31.50 Aligned_cols=87 Identities=13% Similarity=0.055 Sum_probs=59.9
Q ss_pred ccEEEecCCCCCCCHHHHHHHHHHHHHcCCcc-EEecCCCCHHHHHHHhhcCCceEEeeeccccccccc-ccHHHHHHHh
Q 024050 126 IDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRDIE-EEIIPLCREL 203 (273)
Q Consensus 126 iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~~l~~~~~~-~~l~~~~~~~ 203 (273)
.++.++..|-+.. -++.+.+|.+...+. ..+=|.++.+.+.+++....++++|+..+..---.+ ..+...|+++
T Consensus 120 ~~i~~iEeP~~~~----d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~~~~d~~~~k~~~~GGi~~~~~i~~~a~~~ 195 (229)
T cd00308 120 YGLAWIEEPCAPD----DLEGYAALRRRTGIPIAADESVTTVDDALEALELGAVDILQIKPTRVGGLTESRRAADLAEAF 195 (229)
T ss_pred cCCCeEECCCCcc----CHHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHc
Confidence 5666666664432 356677788777665 334445677777777877778889987776542111 6788999999
Q ss_pred CCeEEecccCCCc
Q 024050 204 GIGIVPYSPLGRG 216 (273)
Q Consensus 204 gi~v~a~spl~~G 216 (273)
|+.++..+.+..|
T Consensus 196 gi~~~~~~~~~s~ 208 (229)
T cd00308 196 GIRVMVHGTLESS 208 (229)
T ss_pred CCEEeecCCCCCH
Confidence 9999998776544
No 42
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=79.70 E-value=6.6 Score=32.62 Aligned_cols=67 Identities=19% Similarity=0.248 Sum_probs=44.4
Q ss_pred HHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEecC-CCCHHHHHHHhhcCCceEEeeecc
Q 024050 118 LKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS-EASPGTIRRAHAVHPITAVQMEWS 186 (273)
Q Consensus 118 L~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~q~~~~ 186 (273)
...+|.|++-+++......... .+..+.+.+.. .+.+..+||. +-+++.+.++.+...++++|++-+
T Consensus 19 ~~~~Gad~iGfI~~~~S~R~V~-~~~a~~i~~~~-~~~i~~VgVf~~~~~~~i~~~~~~~~~d~vQLHg~ 86 (210)
T PRK01222 19 AAELGADAIGFVFYPKSPRYVS-PEQAAELAAAL-PPFVKVVGVFVNASDEEIDEIVETVPLDLLQLHGD 86 (210)
T ss_pred HHHcCCCEEEEccCCCCCCcCC-HHHHHHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEECCC
Confidence 3458999999974332111122 23333333332 3568899997 678899999999999999999653
No 43
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=79.67 E-value=36 Score=30.71 Aligned_cols=88 Identities=9% Similarity=0.063 Sum_probs=60.5
Q ss_pred ccEEEecCCCCCCCHHHHHHHHHHHHHcCCcc-EEecCCCCHHHHHHHhhcCCceEEeeecccccccc-cccHHHHHHHh
Q 024050 126 IDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRDI-EEEIIPLCREL 203 (273)
Q Consensus 126 iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~~l~~~~~-~~~l~~~~~~~ 203 (273)
.++.++..|-.. +.++.+.+|++...+. ..|=|-++...+.+++....++++|+..+..---. -..+...|+.+
T Consensus 213 ~~~~~iEeP~~~----~d~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~~~~d~~~~d~~~~GGi~~~~~i~~lA~~~ 288 (368)
T TIGR02534 213 AGVELIEQPTPA----ENREALARLTRRFNVPIMADESVTGPADALAIAKASAADVFALKTTKSGGLLESKKIAAIAEAA 288 (368)
T ss_pred cChhheECCCCc----ccHHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHhCCCCEEEEcccccCCHHHHHHHHHHHHHc
Confidence 345556655432 2466777787776655 56767788888888888877888998776643211 16789999999
Q ss_pred CCeEEecccCCCcc
Q 024050 204 GIGIVPYSPLGRGF 217 (273)
Q Consensus 204 gi~v~a~spl~~G~ 217 (273)
|+.++..+.+.+++
T Consensus 289 gi~~~~~~~~~s~i 302 (368)
T TIGR02534 289 GIALYGGTMLEGPI 302 (368)
T ss_pred CCceeeecchhhHH
Confidence 99998765554443
No 44
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=79.36 E-value=47 Score=29.78 Aligned_cols=25 Identities=8% Similarity=0.137 Sum_probs=22.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCccccc
Q 024050 37 PVSEEDGISMIKHAFSKGITFFDTA 61 (273)
Q Consensus 37 ~~~~~~~~~~l~~A~~~Gin~~DtA 61 (273)
..+.++..++++..-++||..|+.+
T Consensus 21 ~f~~~~~~~i~~~L~~aGv~~IEvg 45 (337)
T PRK08195 21 QYTLEQVRAIARALDAAGVPVIEVT 45 (337)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEee
Confidence 4578999999999999999999984
No 45
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=78.76 E-value=47 Score=29.42 Aligned_cols=154 Identities=14% Similarity=0.116 Sum_probs=84.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCccccccCCC--CCcHHHHHHHHHhcC-CCCCEEEEeccCcCCCCCccccccCCHHHHHHH
Q 024050 37 PVSEEDGISMIKHAFSKGITFFDTADVYG--QNANEVLLGKALKQL-PREKIQVATKFGIAGIGVAGVIVKGAPDYVRSC 113 (273)
Q Consensus 37 ~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg--~g~se~~lg~~l~~~-~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~ 113 (273)
.++.++..++++.+.+.|++.|.-...-. .-.-.+++. .+++. .-.++.|+|-.. .+.+.
T Consensus 48 ~ls~eei~~~i~~~~~~gi~~I~~tGGEPll~~~l~~li~-~i~~~~~~~~i~itTNG~----------------ll~~~ 110 (331)
T PRK00164 48 LLSLEEIERLVRAFVALGVRKVRLTGGEPLLRKDLEDIIA-ALAALPGIRDLALTTNGY----------------LLARR 110 (331)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEECCCCcCccCHHHHHH-HHHhcCCCceEEEEcCch----------------hHHHH
Confidence 36789999999999999998776543111 001222222 23322 123566666521 01122
Q ss_pred HHHHHHHcCCCcccEEEecCCCC--------CCCHHHHHHHHHHHHHcCC----ccEEecCCCCHHHHHHHhhc---CCc
Q 024050 114 CEASLKRLDVDYIDLYYQHRVDT--------SVPIEETIGEMKKLVEEGK----IKYIGLSEASPGTIRRAHAV---HPI 178 (273)
Q Consensus 114 ~~~sL~~L~~d~iDl~~lh~~~~--------~~~~~~~~~~L~~l~~~G~----ir~iGvS~~~~~~l~~~~~~---~~~ 178 (273)
-+.|...|++.+- +.||..++ ...++.++++++.+++.|. |..+.+...+.+.+.++.+. ..+
T Consensus 111 -~~~L~~agl~~i~-ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~~~~~~~gv 188 (331)
T PRK00164 111 -AAALKDAGLDRVN-VSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLLEWAKDRGI 188 (331)
T ss_pred -HHHHHHcCCCEEE-EEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHHHHHHhCCC
Confidence 2334455655543 44555443 2347889999999999986 33444445565666655543 344
Q ss_pred eEEeeeccccccc---------ccccHHHHHHHhCCeEEe
Q 024050 179 TAVQMEWSLWTRD---------IEEEIIPLCRELGIGIVP 209 (273)
Q Consensus 179 ~~~q~~~~l~~~~---------~~~~l~~~~~~~gi~v~a 209 (273)
.+.-++|.++... ...++.+..+++|+.+..
T Consensus 189 ~v~~ie~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 228 (331)
T PRK00164 189 QLRFIELMPTGEGNEWFRKHHLSGAEIRARLAERGWTLQP 228 (331)
T ss_pred eEEEEEeeECCCCcchhhhcCCCHHHHHHHHHhccCcccc
Confidence 4444455543321 015677777777655443
No 46
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=78.68 E-value=13 Score=34.21 Aligned_cols=59 Identities=17% Similarity=0.121 Sum_probs=33.1
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEecC-CCCC-----------CC-HH---HHH-HHHHHHHHcCCccEEecCCCCH
Q 024050 106 APDYVRSCCEASLKRLDVDYIDLYYQHR-VDTS-----------VP-IE---ETI-GEMKKLVEEGKIKYIGLSEASP 166 (273)
Q Consensus 106 ~~~~i~~~~~~sL~~L~~d~iDl~~lh~-~~~~-----------~~-~~---~~~-~~L~~l~~~G~ir~iGvS~~~~ 166 (273)
+.+.+++.++..++ |+.++|.+|.+.- |... .+ .+ +.+ .+.+.|.+.|.. ++++|||.-
T Consensus 180 t~e~~~~tl~~~~~-l~p~~is~y~L~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~Gy~-~yeisnfa~ 255 (400)
T PRK07379 180 TLEDWQASLEAAIA-LNPTHLSCYDLVLEPGTAFGKQYQPGKAPLPSDETTAAMYRLAQEILTQAGYE-HYEISNYAK 255 (400)
T ss_pred CHHHHHHHHHHHHc-CCCCEEEEecceecCCchhHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHcCCc-eeeeeheEC
Confidence 45566666655443 6677777766642 2110 01 11 222 455667888875 589999863
No 47
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=78.19 E-value=35 Score=28.76 Aligned_cols=84 Identities=11% Similarity=0.038 Sum_probs=43.8
Q ss_pred HHHHHcCCCcccEEEecCCCCCCCH-HHHHHHHHHHHHcCCccEEecCC-CCHHHHHHHhhcCCceEEeeeccccccccc
Q 024050 116 ASLKRLDVDYIDLYYQHRVDTSVPI-EETIGEMKKLVEEGKIKYIGLSE-ASPGTIRRAHAVHPITAVQMEWSLWTRDIE 193 (273)
Q Consensus 116 ~sL~~L~~d~iDl~~lh~~~~~~~~-~~~~~~L~~l~~~G~ir~iGvS~-~~~~~l~~~~~~~~~~~~q~~~~l~~~~~~ 193 (273)
+.++.+| +|.+.+|..+..... .-.++.+.++++.-.+.-|..-. .+++.++++++....+.+.+---+++....
T Consensus 156 ~~l~~~G---~d~i~v~~i~~~g~~~g~~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~~~~~~ 232 (243)
T cd04731 156 KEVEELG---AGEILLTSMDRDGTKKGYDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGGADAALAASIFHFGEYT 232 (243)
T ss_pred HHHHHCC---CCEEEEeccCCCCCCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHHcCCCC
Confidence 3445566 456666665432111 11355566666555555555544 356777777776555555553333333222
Q ss_pred -ccHHHHHHH
Q 024050 194 -EEIIPLCRE 202 (273)
Q Consensus 194 -~~l~~~~~~ 202 (273)
.++.+.|++
T Consensus 233 ~~~~~~~~~~ 242 (243)
T cd04731 233 IAELKEYLAE 242 (243)
T ss_pred HHHHHHHHhh
Confidence 455566554
No 48
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=77.98 E-value=13 Score=33.62 Aligned_cols=60 Identities=18% Similarity=0.143 Sum_probs=38.4
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEecC-CCCC-----------CCHH----HH-HHHHHHHHHcCCccEEecCCCCH
Q 024050 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHR-VDTS-----------VPIE----ET-IGEMKKLVEEGKIKYIGLSEASP 166 (273)
Q Consensus 105 ~~~~~i~~~~~~sL~~L~~d~iDl~~lh~-~~~~-----------~~~~----~~-~~~L~~l~~~G~ir~iGvS~~~~ 166 (273)
.+.+.+++.++..++ |+.++|.+|.+.- |... .+.+ +. ..+.+.|.+.|.. ++++|||.-
T Consensus 167 qt~~~~~~~l~~~~~-l~~~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~-~yeis~fa~ 243 (370)
T PRK06294 167 QSLSDFIVDLHQAIT-LPITHISLYNLTIDPHTSFYKHRKRLLPSIADEEILAEMSLAAEELLTSQGFT-RYELASYAK 243 (370)
T ss_pred CCHHHHHHHHHHHHc-cCCCeEEEeeeEecCCChHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHcCCC-eeeeeeeeC
Confidence 467888888887765 8899999988752 2210 1111 22 2355667788875 478998864
No 49
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=77.52 E-value=51 Score=29.24 Aligned_cols=122 Identities=15% Similarity=0.072 Sum_probs=65.4
Q ss_pred CCHHHHHHHHHHHHHC-CCCccccccCCCCCcHHHHHHHHH---hcCC-CCCEEEEeccCcCCCCCccccccCCHHHHHH
Q 024050 38 VSEEDGISMIKHAFSK-GITFFDTADVYGQNANEVLLGKAL---KQLP-REKIQVATKFGIAGIGVAGVIVKGAPDYVRS 112 (273)
Q Consensus 38 ~~~~~~~~~l~~A~~~-Gin~~DtA~~Yg~g~se~~lg~~l---~~~~-r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~ 112 (273)
.+.++..+++++..+. ||+-+--+..-..=.+...+.+.+ ++.+ ...+-|.|+..... +..+.+
T Consensus 119 l~~~e~~~~i~~i~~~~~I~~VilSGGDPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~-----------p~rit~ 187 (321)
T TIGR03822 119 LSPAELDAAFAYIADHPEIWEVILTGGDPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVPVAD-----------PARVTP 187 (321)
T ss_pred CCHHHHHHHHHHHHhCCCccEEEEeCCCcccCCHHHHHHHHHHHHhCCCccEEEEeCCCcccC-----------hhhcCH
Confidence 3567788888877655 777442221111001222233333 3222 33456777754322 334445
Q ss_pred HHHHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCccEE------ecCCCCHHHHHHHh
Q 024050 113 CCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYI------GLSEASPGTIRRAH 173 (273)
Q Consensus 113 ~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~i------GvS~~~~~~l~~~~ 173 (273)
.+-+.|++.|. . ..+.+|......-.+++.++++.|++.|..-.+ |+ |.+.+.+.++.
T Consensus 188 ell~~L~~~g~-~-v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~v~~q~vLl~gv-Nd~~~~l~~l~ 251 (321)
T TIGR03822 188 ALIAALKTSGK-T-VYVALHANHARELTAEARAACARLIDAGIPMVSQSVLLRGV-NDDPETLAALM 251 (321)
T ss_pred HHHHHHHHcCC-c-EEEEecCCChhhcCHHHHHHHHHHHHcCCEEEEEeeEeCCC-CCCHHHHHHHH
Confidence 55556666673 2 357778754433357889999999999952111 22 45555555544
No 50
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=77.36 E-value=54 Score=29.36 Aligned_cols=25 Identities=8% Similarity=0.068 Sum_probs=21.5
Q ss_pred CCCHHHHHHHHHHHHHCCCCccccc
Q 024050 37 PVSEEDGISMIKHAFSKGITFFDTA 61 (273)
Q Consensus 37 ~~~~~~~~~~l~~A~~~Gin~~DtA 61 (273)
..+.++..++++..-++|+..|+..
T Consensus 20 ~f~~~~~~~ia~~Ld~aGV~~IEvg 44 (333)
T TIGR03217 20 QFTIEQVRAIAAALDEAGVDAIEVT 44 (333)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 4578999999999999999999984
No 51
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=77.07 E-value=53 Score=29.13 Aligned_cols=154 Identities=14% Similarity=0.066 Sum_probs=93.1
Q ss_pred CHHHHHHHHHHHHHCCCCccccccCCCCCcHHHHHHHHHhcCCCCCEEEEeccCcCCCCCccccccCCHHHHHHHHHHHH
Q 024050 39 SEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASL 118 (273)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL 118 (273)
+.++..+.+..+.+.|++.|=.-- +. ..+...=+.+++.- .++.|.-=... .++.+... . -+.|
T Consensus 132 ~~~~~~~~a~~~~~~Gf~~~KiKv--~~-~~d~~~v~~vr~~~-~~~~l~vDaN~----------~~~~~~a~-~-~~~l 195 (324)
T TIGR01928 132 NDEQMLKQIESLKATGYKRIKLKI--TP-QIMHQLVKLRRLRF-PQIPLVIDANE----------SYDLQDFP-R-LKEL 195 (324)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEe--CC-chhHHHHHHHHHhC-CCCcEEEECCC----------CCCHHHHH-H-HHHH
Confidence 457777888888899999763321 11 12323334555422 23333322211 13444431 1 2333
Q ss_pred HHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCcc-EEecCCCCHHHHHHHhhcCCceEEeeeccccccccc-ccH
Q 024050 119 KRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRDIE-EEI 196 (273)
Q Consensus 119 ~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~~l~~~~~~-~~l 196 (273)
+. .++.++..|-. .+.++.+.+|++.-.+. ..|=|.++...+..+++...++++|+..+..---.+ ..+
T Consensus 196 ~~-----~~~~~iEeP~~----~~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~dvi~~d~~~~GGit~~~~~ 266 (324)
T TIGR01928 196 DR-----YQLLYIEEPFK----IDDLSMLDELAKGTITPICLDESITSLDDARNLIELGNVKVINIKPGRLGGLTEVQKA 266 (324)
T ss_pred hh-----CCCcEEECCCC----hhHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHcCCCCEEEeCcchhcCHHHHHHH
Confidence 33 35556665532 24467788888776554 456677889999999988888899987776442111 678
Q ss_pred HHHHHHhCCeEEecccCCCcc
Q 024050 197 IPLCRELGIGIVPYSPLGRGF 217 (273)
Q Consensus 197 ~~~~~~~gi~v~a~spl~~G~ 217 (273)
...|+.+|+.++..+.+..|+
T Consensus 267 ~~~A~~~gi~~~~~~~~es~i 287 (324)
T TIGR01928 267 IETCREHGAKVWIGGMLETGI 287 (324)
T ss_pred HHHHHHcCCeEEEcceEcccH
Confidence 999999999999876665554
No 52
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=76.99 E-value=32 Score=30.16 Aligned_cols=95 Identities=17% Similarity=0.272 Sum_probs=66.3
Q ss_pred HHHHHHcCCCcccEEEecCCCC-----CCCHHHHHHHHHHHHHcCCccE-EecCC---CCHHHHHHHhhcCCc-eEEeee
Q 024050 115 EASLKRLDVDYIDLYYQHRVDT-----SVPIEETIGEMKKLVEEGKIKY-IGLSE---ASPGTIRRAHAVHPI-TAVQME 184 (273)
Q Consensus 115 ~~sL~~L~~d~iDl~~lh~~~~-----~~~~~~~~~~L~~l~~~G~ir~-iGvS~---~~~~~l~~~~~~~~~-~~~q~~ 184 (273)
+...+++| .|++.+|-.+. +.+..|..+.|+++.+.=++-- ||=|. -+++.++++.+...- .|.-..
T Consensus 157 rk~Vk~fg---admvTiHlIsTdPki~D~p~~EAak~lEdvLqAVdvPiiiGGSGnpeKDpeVlekaAEvaEGeRclLaS 233 (403)
T COG2069 157 RKCVKKFG---ADMVTIHLISTDPKIKDTPAKEAAKTLEDVLQAVDVPIIIGGSGNPEKDPEVLEKAAEVAEGERCLLAS 233 (403)
T ss_pred HHHHHHhC---CceEEEEeecCCccccCCCHHHHHHHHHHHHHhcCcCEEecCCCCCccCHHHHHHHHHhhcCceEEeec
Confidence 45556777 57888886654 3667889999999888777643 57676 467889888776322 222223
Q ss_pred cccccccccccHHHHHHHhCCeEEecccCC
Q 024050 185 WSLWTRDIEEEIIPLCRELGIGIVPYSPLG 214 (273)
Q Consensus 185 ~~l~~~~~~~~l~~~~~~~gi~v~a~spl~ 214 (273)
.|+ +-+. ..+.+.|.++|=.|++|+++.
T Consensus 234 anl-dlDy-~~ia~AA~ky~H~VLswt~~D 261 (403)
T COG2069 234 ANL-DLDY-ERIAEAALKYDHVVLSWTQMD 261 (403)
T ss_pred ccc-ccCH-HHHHHHHHhcCceEEEeeccC
Confidence 333 2222 678999999999999999986
No 53
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=76.71 E-value=20 Score=29.78 Aligned_cols=81 Identities=19% Similarity=0.235 Sum_probs=51.8
Q ss_pred HHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCC-ccEEecC-CCCHHHHHHHhhcCCceEEeeecccccccccccH
Q 024050 119 KRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGK-IKYIGLS-EASPGTIRRAHAVHPITAVQMEWSLWTRDIEEEI 196 (273)
Q Consensus 119 ~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~-ir~iGvS-~~~~~~l~~~~~~~~~~~~q~~~~l~~~~~~~~l 196 (273)
..+|.||+-+++.-.-......+ . ..++.+.-. ++.+||. |.+.+.+.++++...++.+|++-.. ..+.
T Consensus 19 ~~~gad~iG~If~~~SpR~Vs~~-~---a~~i~~~v~~~~~VgVf~n~~~~~i~~i~~~~~ld~VQlHG~e-----~~~~ 89 (208)
T COG0135 19 AKAGADYIGFIFVPKSPRYVSPE-Q---AREIASAVPKVKVVGVFVNESIEEILEIAEELGLDAVQLHGDE-----DPEY 89 (208)
T ss_pred HHcCCCEEEEEEcCCCCCcCCHH-H---HHHHHHhCCCCCEEEEECCCCHHHHHHHHHhcCCCEEEECCCC-----CHHH
Confidence 45889999888775321222222 2 233333333 7899997 5678889999999999999986542 2445
Q ss_pred HHHHHHhC-CeEE
Q 024050 197 IPLCRELG-IGIV 208 (273)
Q Consensus 197 ~~~~~~~g-i~v~ 208 (273)
++..++.. +.|+
T Consensus 90 ~~~l~~~~~~~v~ 102 (208)
T COG0135 90 IDQLKEELGVPVI 102 (208)
T ss_pred HHHHHhhcCCceE
Confidence 56666553 5555
No 54
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=76.65 E-value=13 Score=34.75 Aligned_cols=28 Identities=21% Similarity=0.258 Sum_probs=22.3
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEecC
Q 024050 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHR 133 (273)
Q Consensus 105 ~~~~~i~~~~~~sL~~L~~d~iDl~~lh~ 133 (273)
.+.+.+++.++..++ |+.++|++|.+.-
T Consensus 227 qT~e~~~~~l~~~~~-l~~~~is~y~L~~ 254 (449)
T PRK09058 227 QTPEIWQQDLAIVRD-LGLDGVDLYALNL 254 (449)
T ss_pred CCHHHHHHHHHHHHh-cCCCEEEEecccc
Confidence 467888888777665 8999999998864
No 55
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=76.60 E-value=57 Score=29.28 Aligned_cols=153 Identities=12% Similarity=0.080 Sum_probs=89.0
Q ss_pred CHHHHHHHHHHHHHCCCCccccccCCCC-----C---cHHHHHHHHHhcCCCCCEEEEeccCcCCCCCccccccCCHHHH
Q 024050 39 SEEDGISMIKHAFSKGITFFDTADVYGQ-----N---ANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYV 110 (273)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~-----g---~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i 110 (273)
+.++..+.+..+.+.|++.|=.--..+. + ..+...=+++++.-..++.|..=... .++.+.
T Consensus 123 ~~~~~~~~~~~~~~~Gf~~~KiKvg~~~~~~~~~~~~~~D~~~i~avr~~~g~~~~l~vDaN~----------~~~~~~- 191 (352)
T cd03325 123 RPSDVAEAARARREAGFTAVKMNATEELQWIDTSKKVDAAVERVAALREAVGPDIDIGVDFHG----------RVSKPM- 191 (352)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCCCcccCCCHHHHHHHHHHHHHHHHhhCCCCEEEEECCC----------CCCHHH-
Confidence 4566777778888999987654321110 0 11222333444422224444332221 133332
Q ss_pred HHHHHHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCcc-EEecCCCCHHHHHHHhhcCCceEEeeeccccc
Q 024050 111 RSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPGTIRRAHAVHPITAVQMEWSLWT 189 (273)
Q Consensus 111 ~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~~l~~ 189 (273)
..+.++.|. ..++.++..|-.. +-++.+.+|+++.-+. +.|=|.++++.+..+++..-++++|+..+..-
T Consensus 192 ---A~~~~~~l~--~~~i~~iEeP~~~----~d~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~v~~d~~~~G 262 (352)
T cd03325 192 ---AKDLAKELE--PYRLLFIEEPVLP----ENVEALAEIAARTTIPIATGERLFSRWDFKELLEDGAVDIIQPDISHAG 262 (352)
T ss_pred ---HHHHHHhcc--ccCCcEEECCCCc----cCHHHHHHHHHhCCCCEEecccccCHHHHHHHHHhCCCCEEecCccccC
Confidence 333334442 2455566655432 2477788888776555 44556678888888888777888998766543
Q ss_pred cc-ccccHHHHHHHhCCeEEecc
Q 024050 190 RD-IEEEIIPLCRELGIGIVPYS 211 (273)
Q Consensus 190 ~~-~~~~l~~~~~~~gi~v~a~s 211 (273)
-- .-..+.+.|+++||.++..+
T Consensus 263 Git~~~~~~~lA~~~gi~~~~h~ 285 (352)
T cd03325 263 GITELKKIAAMAEAYDVALAPHC 285 (352)
T ss_pred CHHHHHHHHHHHHHcCCcEeccC
Confidence 21 12679999999999998665
No 56
>PRK05660 HemN family oxidoreductase; Provisional
Probab=76.33 E-value=17 Score=32.99 Aligned_cols=60 Identities=12% Similarity=0.071 Sum_probs=35.5
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEec-CCCCC-------CC-HHH---HH-HHHHHHHHcCCccEEecCCCCH
Q 024050 105 GAPDYVRSCCEASLKRLDVDYIDLYYQH-RVDTS-------VP-IEE---TI-GEMKKLVEEGKIKYIGLSEASP 166 (273)
Q Consensus 105 ~~~~~i~~~~~~sL~~L~~d~iDl~~lh-~~~~~-------~~-~~~---~~-~~L~~l~~~G~ir~iGvS~~~~ 166 (273)
.+.+.+.+.++..++ ++.++|.+|.+- .|+.. .+ .++ .+ .+.+.|.+.|.. .+++|||.-
T Consensus 171 qt~~~~~~~l~~~~~-l~p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~-~yei~~fa~ 243 (378)
T PRK05660 171 QSLEEALDDLRQAIA-LNPPHLSWYQLTIEPNTLFGSRPPVLPDDDALWDIFEQGHQLLTAAGYQ-QYETSAYAK 243 (378)
T ss_pred CCHHHHHHHHHHHHh-cCCCeEEeeccEeccCCcccccCCCCcCHHHHHHHHHHHHHHHHHcCCc-EeecccccC
Confidence 457777777776555 888888888774 22210 11 122 22 334556777874 478888864
No 57
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=75.15 E-value=31 Score=30.99 Aligned_cols=60 Identities=13% Similarity=0.053 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEecC-CCCC--------CCHHHHH-HHHHHHHHcCCccEEecCCCCH
Q 024050 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHR-VDTS--------VPIEETI-GEMKKLVEEGKIKYIGLSEASP 166 (273)
Q Consensus 105 ~~~~~i~~~~~~sL~~L~~d~iDl~~lh~-~~~~--------~~~~~~~-~~L~~l~~~G~ir~iGvS~~~~ 166 (273)
.+.+.+++.++..+ +++.+++.+|.+.- |... .+.++.+ .+.+.|.+.|.. .+++|||.-
T Consensus 162 qt~~~~~~~l~~~~-~l~~~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~l~~~Gy~-~yeis~fa~ 231 (350)
T PRK08446 162 DNKKLLKEELKLAK-ELPINHLSAYSLTIEENTPFFEKNHKKKDDENLAKFFIEQLEELGFK-QYEISNFGK 231 (350)
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEeccceecCCChhHHhhhcCCCHHHHHHHHHHHHHHCCCc-EEEeehhhC
Confidence 45677777776644 48888888877652 2211 1112333 445667777864 689998863
No 58
>PRK13796 GTPase YqeH; Provisional
Probab=74.90 E-value=65 Score=29.15 Aligned_cols=120 Identities=14% Similarity=0.177 Sum_probs=79.5
Q ss_pred CCCHHHHHHHHHHHHHCC---CCccccccCCCCCcHHHHHHHHHhcCCCCCEEEEeccCcCCCCCccccccCCHHHHHHH
Q 024050 37 PVSEEDGISMIKHAFSKG---ITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSC 113 (273)
Q Consensus 37 ~~~~~~~~~~l~~A~~~G---in~~DtA~~Yg~g~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~ 113 (273)
.++.++..++++..-+.- +-.+|..+.-+ .-...+.+... .+.-++|.+|.-.... ....+.+.+.
T Consensus 53 ~~~~~~~~~~l~~i~~~~~lIv~VVD~~D~~~--s~~~~L~~~~~--~kpviLViNK~DLl~~-------~~~~~~i~~~ 121 (365)
T PRK13796 53 SLTDDDFLKLLNGIGDSDALVVNVVDIFDFNG--SWIPGLHRFVG--NNPVLLVGNKADLLPK-------SVKKNKVKNW 121 (365)
T ss_pred CCCHHHHHHHHHhhcccCcEEEEEEECccCCC--chhHHHHHHhC--CCCEEEEEEchhhCCC-------ccCHHHHHHH
Confidence 356778888888887655 44677655443 22333444443 4556889999765321 1235566666
Q ss_pred HHHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEecCCCCHHH
Q 024050 114 CEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGT 168 (273)
Q Consensus 114 ~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~ 168 (273)
++...+.+|....|++.+..-. ...+.+.++.+.++.+.+.+--+|.+|..-..
T Consensus 122 l~~~~k~~g~~~~~v~~vSAk~-g~gI~eL~~~I~~~~~~~~v~vvG~~NvGKST 175 (365)
T PRK13796 122 LRQEAKELGLRPVDVVLISAQK-GHGIDELLEAIEKYREGRDVYVVGVTNVGKST 175 (365)
T ss_pred HHHHHHhcCCCcCcEEEEECCC-CCCHHHHHHHHHHhcCCCeEEEEcCCCCcHHH
Confidence 7777777786555777765443 35678888888888777888899999987544
No 59
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=74.82 E-value=28 Score=29.80 Aligned_cols=104 Identities=20% Similarity=0.159 Sum_probs=66.9
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEE-ecCCCCC-CC----HHHHHHHHHHHHHcCCccEEecCCCCHHHHHHHhhcCCc
Q 024050 105 GAPDYVRSCCEASLKRLDVDYIDLYY-QHRVDTS-VP----IEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHPI 178 (273)
Q Consensus 105 ~~~~~i~~~~~~sL~~L~~d~iDl~~-lh~~~~~-~~----~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~ 178 (273)
.+.+.+.+..++.+ .-|-|.||+-. --+|+.. .+ .+.....++.+++.-.+ -|.+-+++++.++++++....
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~-piSIDT~~~~v~~aaL~~g~~ 98 (258)
T cd00423 21 LSLDKALEHARRMV-EEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDV-PISVDTFNAEVAEAALKAGAD 98 (258)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCC-eEEEeCCcHHHHHHHHHhCCC
Confidence 35666666666554 56889999864 3445431 11 23345566666655333 288899999999999998733
Q ss_pred eEEeeecccccccccccHHHHHHHhCCeEEecccCC
Q 024050 179 TAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLG 214 (273)
Q Consensus 179 ~~~q~~~~l~~~~~~~~l~~~~~~~gi~v~a~spl~ 214 (273)
+-+..+....+ .++++.++++|..++.+..-.
T Consensus 99 --iINdis~~~~~--~~~~~l~~~~~~~vV~m~~~~ 130 (258)
T cd00423 99 --IINDVSGGRGD--PEMAPLAAEYGAPVVLMHMDG 130 (258)
T ss_pred --EEEeCCCCCCC--hHHHHHHHHcCCCEEEECcCC
Confidence 33333444322 568999999999999885433
No 60
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=74.07 E-value=58 Score=28.14 Aligned_cols=154 Identities=12% Similarity=0.127 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHCCCCccccccCCCCCcHHHH--HHHHHhc-CCCCCE-EEEeccCcCCCCCccccccCCHHHHHHHHHH
Q 024050 41 EDGISMIKHAFSKGITFFDTADVYGQNANEVL--LGKALKQ-LPREKI-QVATKFGIAGIGVAGVIVKGAPDYVRSCCEA 116 (273)
Q Consensus 41 ~~~~~~l~~A~~~Gin~~DtA~~Yg~g~se~~--lg~~l~~-~~r~~~-~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (273)
+...+.++.--+.|+.+|..++.=+.+..+.. +.+.|++ ..-+-+ .++.. +.++..++..+..
T Consensus 15 ~~l~~~~~~l~~~~pd~isvT~~~~~~~~~~t~~~a~~l~~~~g~~~i~Hlt~r-------------~~n~~~l~~~L~~ 81 (272)
T TIGR00676 15 ENLWETVDRLSPLDPDFVSVTYGAGGSTRDRTVRIVRRIKKETGIPTVPHLTCI-------------GATREEIREILRE 81 (272)
T ss_pred HHHHHHHHHHhcCCCCEEEeccCCCCCcHHHHHHHHHHHHHhcCCCeeEEeeec-------------CCCHHHHHHHHHH
Confidence 55556666666778999999875553323332 3333442 111111 12222 1346666666664
Q ss_pred HHHHcCCCcccEEEec-CCC------CCCCHHHHHHHHHHHHHc-CCccEEecCCCCH---------HHHHHHhhc----
Q 024050 117 SLKRLDVDYIDLYYQH-RVD------TSVPIEETIGEMKKLVEE-GKIKYIGLSEASP---------GTIRRAHAV---- 175 (273)
Q Consensus 117 sL~~L~~d~iDl~~lh-~~~------~~~~~~~~~~~L~~l~~~-G~ir~iGvS~~~~---------~~l~~~~~~---- 175 (273)
. ..+|++. ++.|- ++. .........+-++.+++. |. -+||+..++- +.++.+.+.
T Consensus 82 ~-~~~Gi~n--vL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~-f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aG 157 (272)
T TIGR00676 82 Y-RELGIRH--ILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGD-FDIGVAAYPEKHPEAPNLEEDIENLKRKVDAG 157 (272)
T ss_pred H-HHCCCCE--EEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCC-eeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 4 6667432 23232 222 112233455555555554 43 4788776421 234444333
Q ss_pred CCceEEeeecccccccccccHHHHHHHhCCeEEecccCCCccC
Q 024050 176 HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFF 218 (273)
Q Consensus 176 ~~~~~~q~~~~l~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L 218 (273)
..+.+-|.-|+.- .-.++++.|++.|+.+ |+--|++
T Consensus 158 A~f~iTQ~~fd~~---~~~~~~~~~~~~gi~~----PIi~Gi~ 193 (272)
T TIGR00676 158 ADYAITQLFFDND---DYYRFVDRCRAAGIDV----PIIPGIM 193 (272)
T ss_pred CCeEeeccccCHH---HHHHHHHHHHHcCCCC----CEecccC
Confidence 4566777766652 2267889999998775 5555554
No 61
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=73.46 E-value=53 Score=29.49 Aligned_cols=152 Identities=9% Similarity=0.046 Sum_probs=86.5
Q ss_pred CHHHHHHHHHHHHHCCCCccccccCCCCCcHHHHHHHHHhcCCCCCEEEEeccCcCCCCCccccccCCHHHHHHHHHHHH
Q 024050 39 SEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASL 118 (273)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL 118 (273)
+.++..+.+..+.+.|++.|=.--....-..+...=+++++.-.+++.|..-... .++.+...+.++ .|
T Consensus 141 ~~~~~~~~a~~~~~~Gf~~~KiKvg~~~~~~d~~~v~air~~~g~~~~l~vDaN~----------~~~~~~A~~~~~-~l 209 (355)
T cd03321 141 GAKLATERAVTAAEEGFHAVKTKIGYPTADEDLAVVRSIRQAVGDGVGLMVDYNQ----------SLTVPEAIERGQ-AL 209 (355)
T ss_pred hHHHHHHHHHHHHHhhhHHHhhhcCCCChHhHHHHHHHHHHhhCCCCEEEEeCCC----------CcCHHHHHHHHH-HH
Confidence 3556667777777889876533211110012222333555433345555443321 234444333322 23
Q ss_pred HHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCcc-EEecCCCCHHHHHHHhhcCCceEEeeeccccccccc-ccH
Q 024050 119 KRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRDIE-EEI 196 (273)
Q Consensus 119 ~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~~l~~~~~~-~~l 196 (273)
+.+ ++.++..|-.. +-++.+.+|++.--|. ..|=+.+++..+..+++...++++|+..+..---.+ ..+
T Consensus 210 ~~~-----~i~~iEeP~~~----~d~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~~~~d~i~~~~~~~GGit~~~~i 280 (355)
T cd03321 210 DQE-----GLTWIEEPTLQ----HDYEGHARIASALRTPVQMGENWLGPEEMFKALSAGACDLVMPDLMKIGGVTGWLRA 280 (355)
T ss_pred HcC-----CCCEEECCCCC----cCHHHHHHHHHhcCCCEEEcCCCcCHHHHHHHHHhCCCCeEecCHhhhCCHHHHHHH
Confidence 433 45555655432 3456777777765433 345556888999999888888899987776532111 678
Q ss_pred HHHHHHhCCeEEec
Q 024050 197 IPLCRELGIGIVPY 210 (273)
Q Consensus 197 ~~~~~~~gi~v~a~ 210 (273)
.+.|+.+|+.++..
T Consensus 281 a~~A~~~gi~~~~h 294 (355)
T cd03321 281 SALAEQAGIPMSSH 294 (355)
T ss_pred HHHHHHcCCeeccc
Confidence 99999999998654
No 62
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=72.60 E-value=61 Score=27.79 Aligned_cols=99 Identities=19% Similarity=0.151 Sum_probs=63.2
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEE-ecCCCCC-CCHH-H---HHHHHHHHHHc-CCccEEecCCCCHHHHHHHhhcCC
Q 024050 105 GAPDYVRSCCEASLKRLDVDYIDLYY-QHRVDTS-VPIE-E---TIGEMKKLVEE-GKIKYIGLSEASPGTIRRAHAVHP 177 (273)
Q Consensus 105 ~~~~~i~~~~~~sL~~L~~d~iDl~~-lh~~~~~-~~~~-~---~~~~L~~l~~~-G~ir~iGvS~~~~~~l~~~~~~~~ 177 (273)
.+++.+.+.+++.+ .-|.++||+-- --+|+.. .+.+ | ....++.+++. +. -|.+-+++++.++++++...
T Consensus 20 ~~~~~~~~~a~~~~-~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~--plsiDT~~~~vi~~al~~G~ 96 (257)
T TIGR01496 20 LSVDKAVAHAERML-EEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDV--PISVDTYRAEVARAALEAGA 96 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC--eEEEeCCCHHHHHHHHHcCC
Confidence 35666666666554 46889999942 2234322 1223 2 44555555555 43 38888999999999998864
Q ss_pred ceEEeeecccccccccccHHHHHHHhCCeEEecc
Q 024050 178 ITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYS 211 (273)
Q Consensus 178 ~~~~q~~~~l~~~~~~~~l~~~~~~~gi~v~a~s 211 (273)
..++-+ +... ..++++.++++|..++.+.
T Consensus 97 ~iINsi--s~~~---~~~~~~l~~~~~~~vV~m~ 125 (257)
T TIGR01496 97 DIINDV--SGGQ---DPAMLEVAAEYGVPLVLMH 125 (257)
T ss_pred CEEEEC--CCCC---CchhHHHHHHcCCcEEEEe
Confidence 433333 3332 2568999999999999964
No 63
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=71.83 E-value=39 Score=32.00 Aligned_cols=152 Identities=11% Similarity=0.049 Sum_probs=79.3
Q ss_pred CCHHHHHHHHHHHHH-CCCCccccccCC---CCCcHHHHHHHHHhcC-CCCCEEEEeccCcCCCCCccccccCCHHHHHH
Q 024050 38 VSEEDGISMIKHAFS-KGITFFDTADVY---GQNANEVLLGKALKQL-PREKIQVATKFGIAGIGVAGVIVKGAPDYVRS 112 (273)
Q Consensus 38 ~~~~~~~~~l~~A~~-~Gin~~DtA~~Y---g~g~se~~lg~~l~~~-~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~ 112 (273)
.+.+...+-++...+ .|+++|.-++.. .....++++...++.. ..-.+.+.|.+.... . .+
T Consensus 222 rs~e~Vv~Ei~~l~~~~gv~~~~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~---------~-----d~ 287 (497)
T TIGR02026 222 RDPKKFVDEIEWLVRTHGVGFFILADEEPTINRKKFQEFCEEIIARNPISVTWGINTRVTDIV---------R-----DA 287 (497)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEEecccccCHHHHHHHHHHHHhcCCCCeEEEEeccccccc---------C-----CH
Confidence 356777777777664 699876444322 1111223333322211 111222333321110 0 12
Q ss_pred HHHHHHHHcCCCcccE-------EEecCCCCCCCHHHHHHHHHHHHHcCCccE----EecCCCCHHHHHHHhhc---CCc
Q 024050 113 CCEASLKRLDVDYIDL-------YYQHRVDTSVPIEETIGEMKKLVEEGKIKY----IGLSEASPGTIRRAHAV---HPI 178 (273)
Q Consensus 113 ~~~~sL~~L~~d~iDl-------~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~----iGvS~~~~~~l~~~~~~---~~~ 178 (273)
.+-+.+++.|+.++-+ -.+.........++..++++.+++.|..-. +|+-+.+.+.+++.++. ..+
T Consensus 288 ell~~l~~aG~~~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~~~~t~~~~~~l~~ 367 (497)
T TIGR02026 288 DILHLYRRAGLVHISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQFITGFENETDETFEETYRQLLDWDP 367 (497)
T ss_pred HHHHHHHHhCCcEEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 3344555566544433 112222223446788899999999997433 36667777777665543 334
Q ss_pred eEEeeecccccccccccHHHHHHHhCC
Q 024050 179 TAVQMEWSLWTRDIEEEIIPLCRELGI 205 (273)
Q Consensus 179 ~~~q~~~~l~~~~~~~~l~~~~~~~gi 205 (273)
+ ++.++.+.+-+..++.+.+++.+.
T Consensus 368 ~--~~~~~~~tP~PGT~l~~~~~~~~~ 392 (497)
T TIGR02026 368 D--QANWLMYTPWPFTSLFGELSDRVE 392 (497)
T ss_pred C--ceEEEEecCCCCcHHHHHHHhhcc
Confidence 3 344566666555778888888754
No 64
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=71.21 E-value=55 Score=28.18 Aligned_cols=104 Identities=13% Similarity=0.172 Sum_probs=60.1
Q ss_pred cCCHHHHHHHHHHHHHHcCCCcccEEEecCCCCC------CCHHHHHHHHHHHHHcCCccEEecCCCC---HHHHHHHhh
Q 024050 104 KGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS------VPIEETIGEMKKLVEEGKIKYIGLSEAS---PGTIRRAHA 174 (273)
Q Consensus 104 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~------~~~~~~~~~L~~l~~~G~ir~iGvS~~~---~~~l~~~~~ 174 (273)
.++.+.. ..+-+.|.++|+|+|++-+....... ....+.++.+.++.+ +..+-.+++... .+.++.+.+
T Consensus 16 ~f~~~~~-~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~l~~a~~ 93 (266)
T cd07944 16 DFGDEFV-KAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSK-GNTKIAVMVDYGNDDIDLLEPASG 93 (266)
T ss_pred cCCHHHH-HHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhc-cCCEEEEEECCCCCCHHHHHHHhc
Confidence 4555544 45666699999999999876654321 012456666665553 345656665443 455555544
Q ss_pred cCCceEEeeecccccccccccHHHHHHHhCCeEEec
Q 024050 175 VHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPY 210 (273)
Q Consensus 175 ~~~~~~~q~~~~l~~~~~~~~l~~~~~~~gi~v~a~ 210 (273)
.. ++.+.+.+..-+-+.-.+.+++++++|+.|...
T Consensus 94 ~g-v~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~ 128 (266)
T cd07944 94 SV-VDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFN 128 (266)
T ss_pred CC-cCEEEEecccccHHHHHHHHHHHHHCCCeEEEE
Confidence 32 344444333322221267889999999877654
No 65
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=71.04 E-value=44 Score=28.61 Aligned_cols=105 Identities=16% Similarity=0.170 Sum_probs=59.0
Q ss_pred cCCHHHHHHHHHHHHHHcCCCcccEEEecCCCC-----CCCHHHHHHHHHHHHHc-CCccEEecC---CCCHHHHHHHhh
Q 024050 104 KGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDT-----SVPIEETIGEMKKLVEE-GKIKYIGLS---EASPGTIRRAHA 174 (273)
Q Consensus 104 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~-----~~~~~~~~~~L~~l~~~-G~ir~iGvS---~~~~~~l~~~~~ 174 (273)
.++.+... ++-+.|.++|+++|++-+...... ..+....++.++.+++. ..++...++ ..+.+.++.+.+
T Consensus 18 ~~~~~~k~-~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~ 96 (263)
T cd07943 18 QFTLEQVR-AIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALKQAKLGVLLLPGIGTVDDLKMAAD 96 (263)
T ss_pred ecCHHHHH-HHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhccCCEEEEEecCCccCHHHHHHHHH
Confidence 34455444 455569999999999975432110 01112245555555433 346666554 334566777666
Q ss_pred cCCceEEeeecccccccccccHHHHHHHhCCeEEec
Q 024050 175 VHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPY 210 (273)
Q Consensus 175 ~~~~~~~q~~~~l~~~~~~~~l~~~~~~~gi~v~a~ 210 (273)
. .++.+.+..+.-+-..-.+.+++++++|+.+...
T Consensus 97 ~-g~~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~ 131 (263)
T cd07943 97 L-GVDVVRVATHCTEADVSEQHIGAARKLGMDVVGF 131 (263)
T ss_pred c-CCCEEEEEechhhHHHHHHHHHHHHHCCCeEEEE
Confidence 4 3445554433322222267899999999877654
No 66
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=71.03 E-value=21 Score=30.37 Aligned_cols=110 Identities=21% Similarity=0.213 Sum_probs=61.4
Q ss_pred CCHHHHHHHHHHHHHCCCCccccccCCCCCcHHHHHHHH-----------------Hhc--CCCCCEEEEeccCcCCCCC
Q 024050 38 VSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKA-----------------LKQ--LPREKIQVATKFGIAGIGV 98 (273)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~se~~lg~~-----------------l~~--~~r~~~~i~tK~~~~~~~~ 98 (273)
.+.++..++.++|-+.||.||=|...-. +-.++-+. |+. .....++|+|=.
T Consensus 53 l~~e~~~~L~~~~~~~gi~f~stpfd~~---s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~tgkPvIlSTG~------- 122 (241)
T PF03102_consen 53 LSEEQHKELFEYCKELGIDFFSTPFDEE---SVDFLEELGVPAYKIASGDLTNLPLLEYIAKTGKPVILSTGM------- 122 (241)
T ss_dssp S-HHHHHHHHHHHHHTT-EEEEEE-SHH---HHHHHHHHT-SEEEE-GGGTT-HHHHHHHHTT-S-EEEE-TT-------
T ss_pred CCHHHHHHHHHHHHHcCCEEEECCCCHH---HHHHHHHcCCCEEEeccccccCHHHHHHHHHhCCcEEEECCC-------
Confidence 5789999999999999999987775432 22222111 000 134456666643
Q ss_pred ccccccCCHHHHHHHHHHHHHHcCCCcccEEEecCCCCC-CCHH-HHHHHHHHHHHcCCccEEecCCCCHH
Q 024050 99 AGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS-VPIE-ETIGEMKKLVEEGKIKYIGLSEASPG 167 (273)
Q Consensus 99 ~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~-~~~~-~~~~~L~~l~~~G~ir~iGvS~~~~~ 167 (273)
.+.+.|+++++...++-+ -++.++|+.... .+.+ -.+..+..|++.=- --||+|.|+..
T Consensus 123 ------stl~EI~~Av~~~~~~~~---~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~-~~vG~SDHt~g 183 (241)
T PF03102_consen 123 ------STLEEIERAVEVLREAGN---EDLVLLHCVSSYPTPPEDVNLRVIPTLKERFG-VPVGYSDHTDG 183 (241)
T ss_dssp --------HHHHHHHHHHHHHHCT-----EEEEEE-SSSS--GGG--TTHHHHHHHHST-SEEEEEE-SSS
T ss_pred ------CCHHHHHHHHHHHHhcCC---CCEEEEecCCCCCCChHHcChHHHHHHHHhcC-CCEEeCCCCCC
Confidence 246778888777755554 689999988643 3333 34666677764433 46899998764
No 67
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=70.77 E-value=8.8 Score=33.55 Aligned_cols=103 Identities=14% Similarity=0.103 Sum_probs=60.7
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEecCCCCHHHHHHHhhcCCceEEeee
Q 024050 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHPITAVQME 184 (273)
Q Consensus 105 ~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~ 184 (273)
++.+. +..+-+.|.++|+++|.+-.+++|.......+.++.+..+.+...++...+. .+...++.+++.. ++.+.+-
T Consensus 23 ~s~e~-k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~~~~l~~~~~~~~~~l~-~~~~~ie~A~~~g-~~~v~i~ 99 (287)
T PRK05692 23 IPTAD-KIALIDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQRRPGVTYAALT-PNLKGLEAALAAG-ADEVAVF 99 (287)
T ss_pred cCHHH-HHHHHHHHHHcCCCEEEeCCCcCcccccccccHHHHHHhhhccCCCeEEEEe-cCHHHHHHHHHcC-CCEEEEE
Confidence 34443 4456667999999999998666654222223345666666554446655554 4677788887763 2222222
Q ss_pred ccccc--------ccc------cccHHHHHHHhCCeEEec
Q 024050 185 WSLWT--------RDI------EEEIIPLCRELGIGIVPY 210 (273)
Q Consensus 185 ~~l~~--------~~~------~~~l~~~~~~~gi~v~a~ 210 (273)
.+.-+ +.. -.+.+++++++|+.+.++
T Consensus 100 ~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~ 139 (287)
T PRK05692 100 ASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGY 139 (287)
T ss_pred EecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 22211 100 156899999999988643
No 68
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=69.83 E-value=76 Score=27.71 Aligned_cols=153 Identities=14% Similarity=0.085 Sum_probs=89.5
Q ss_pred CHHHHHHHHHHHHHCC-CCcccc---ccCC-----CCCcHHHHHHHHHhcCCC-CCEEEEeccCcCCCCCccccccCCHH
Q 024050 39 SEEDGISMIKHAFSKG-ITFFDT---ADVY-----GQNANEVLLGKALKQLPR-EKIQVATKFGIAGIGVAGVIVKGAPD 108 (273)
Q Consensus 39 ~~~~~~~~l~~A~~~G-in~~Dt---A~~Y-----g~g~se~~lg~~l~~~~r-~~~~i~tK~~~~~~~~~~~~~~~~~~ 108 (273)
+.++..++.+.+-+.| +..||. +++. ..+.+.+.+-+.++..++ -++-|..|+.+.. +
T Consensus 102 ~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~------------~ 169 (301)
T PRK07259 102 TEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTPNV------------T 169 (301)
T ss_pred CHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCCCc------------h
Confidence 5788888999988998 888876 2221 122345666666665222 2677889986422 1
Q ss_pred HHHHHHHHHHHHcCCCcccEEE-ecCCC--CC--CC--------------HHHHHHHHHHHHHcCCccEEecCCC-CHHH
Q 024050 109 YVRSCCEASLKRLDVDYIDLYY-QHRVD--TS--VP--------------IEETIGEMKKLVEEGKIKYIGLSEA-SPGT 168 (273)
Q Consensus 109 ~i~~~~~~sL~~L~~d~iDl~~-lh~~~--~~--~~--------------~~~~~~~L~~l~~~G~ir~iGvS~~-~~~~ 168 (273)
.+. .+-+.++..|+|.|++.- ++... .. .+ ..-.++.+.++++.=.+-=||+... +++.
T Consensus 170 ~~~-~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~GGI~~~~d 248 (301)
T PRK07259 170 DIV-EIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMGGISSAED 248 (301)
T ss_pred hHH-HHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEECCCCCHHH
Confidence 222 344567788988887642 11110 00 00 0124566667776656788888884 7888
Q ss_pred HHHHhhcCCceEEeeeccccc-cc----ccccHHHHHHHhCC
Q 024050 169 IRRAHAVHPITAVQMEWSLWT-RD----IEEEIIPLCRELGI 205 (273)
Q Consensus 169 l~~~~~~~~~~~~q~~~~l~~-~~----~~~~l~~~~~~~gi 205 (273)
.++++... .+.+|+-=-++. +. ...++-.++.++|.
T Consensus 249 a~~~l~aG-Ad~V~igr~ll~~P~~~~~i~~~l~~~~~~~g~ 289 (301)
T PRK07259 249 AIEFIMAG-ASAVQVGTANFYDPYAFPKIIEGLEAYLDKYGI 289 (301)
T ss_pred HHHHHHcC-CCceeEcHHHhcCcHHHHHHHHHHHHHHHHcCC
Confidence 88888754 577776333322 21 11556666666654
No 69
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=69.74 E-value=51 Score=28.08 Aligned_cols=91 Identities=18% Similarity=0.136 Sum_probs=53.7
Q ss_pred HHHHHHHcCCCcccEEEecCCCCCCCH-HHHHHHHHHHHHcCCccEEecCC-CCHHHHHHHhhcCCceEEeeeccccccc
Q 024050 114 CEASLKRLDVDYIDLYYQHRVDTSVPI-EETIGEMKKLVEEGKIKYIGLSE-ASPGTIRRAHAVHPITAVQMEWSLWTRD 191 (273)
Q Consensus 114 ~~~sL~~L~~d~iDl~~lh~~~~~~~~-~~~~~~L~~l~~~G~ir~iGvS~-~~~~~l~~~~~~~~~~~~q~~~~l~~~~ 191 (273)
+-+-|+.+| +|.+.+|..+.+... .-.++.+.++++.-.+.-|..-. .+++.++++++....+.+.+---++...
T Consensus 160 ~~~~l~~~G---~~~iivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~ 236 (254)
T TIGR00735 160 WAKEVEKLG---AGEILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYRE 236 (254)
T ss_pred HHHHHHHcC---CCEEEEeCcCcccCCCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCC
Confidence 334445666 566666765543211 11355566666665566665554 4678888888876566655532333322
Q ss_pred cc-ccHHHHHHHhCCeE
Q 024050 192 IE-EEIIPLCRELGIGI 207 (273)
Q Consensus 192 ~~-~~l~~~~~~~gi~v 207 (273)
.. .++.+.|+++||.+
T Consensus 237 ~~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 237 ITIGEVKEYLAERGIPV 253 (254)
T ss_pred CCHHHHHHHHHHCCCcc
Confidence 22 67899999999864
No 70
>PLN02363 phosphoribosylanthranilate isomerase
Probab=69.43 E-value=18 Score=31.05 Aligned_cols=73 Identities=19% Similarity=0.260 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEecC-CCCHHHHHHHhhcCCceEEeeec
Q 024050 107 PDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS-EASPGTIRRAHAVHPITAVQMEW 185 (273)
Q Consensus 107 ~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~q~~~ 185 (273)
.+.++.+. ++|.|++-+++...-..... .+....+.+......++.+||. |-+++.+.++.+...++++|++-
T Consensus 57 ~eda~~a~-----~~GaD~iGfIf~~~SpR~Vs-~e~a~~I~~~l~~~~~~~VgVfv~~~~~~I~~~~~~~~ld~VQLHG 130 (256)
T PLN02363 57 ARDAAMAV-----EAGADFIGMILWPKSKRSIS-LSVAKEISQVAREGGAKPVGVFVDDDANTILRAADSSDLELVQLHG 130 (256)
T ss_pred HHHHHHHH-----HcCCCEEEEecCCCCCCcCC-HHHHHHHHHhccccCccEEEEEeCCCHHHHHHHHHhcCCCEEEECC
Confidence 44454444 48999999975432212222 3344444443333246679995 78899999999988999999964
No 71
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=69.23 E-value=29 Score=32.06 Aligned_cols=87 Identities=13% Similarity=-0.015 Sum_probs=62.2
Q ss_pred ccEEEecCCCCCCCHHHHHHHHHHHHHc------CCccEEecCCCCHHHHHHHhhcCCceEEeeeccccccccc-ccHHH
Q 024050 126 IDLYYQHRVDTSVPIEETIGEMKKLVEE------GKIKYIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRDIE-EEIIP 198 (273)
Q Consensus 126 iDl~~lh~~~~~~~~~~~~~~L~~l~~~------G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~~l~~~~~~-~~l~~ 198 (273)
+++ ++..|-+..+.++.++.+.+|++. ..=-..+=|.++.+.+.++++..-.+++|+..+-.---.+ ..+..
T Consensus 264 ~~~-~iEqPv~~~d~~~~~e~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~~a~d~v~iK~~k~GGIt~a~kia~ 342 (408)
T TIGR01502 264 FHL-RIEGPMDVGSRQAQIEAMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDAKAGHMVQIKTPDVGGVNNIARAIM 342 (408)
T ss_pred CCe-EEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHH
Confidence 344 777776544445667888888766 3333345566788999999988888899997776442212 77999
Q ss_pred HHHHhCCeEEecccC
Q 024050 199 LCRELGIGIVPYSPL 213 (273)
Q Consensus 199 ~~~~~gi~v~a~spl 213 (273)
+|+.+||.++..+..
T Consensus 343 lA~~~Gi~~~~g~~~ 357 (408)
T TIGR01502 343 YCKANGMGAYVGGTC 357 (408)
T ss_pred HHHHcCCEEEEeCCC
Confidence 999999999997665
No 72
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=69.22 E-value=36 Score=30.81 Aligned_cols=59 Identities=17% Similarity=0.165 Sum_probs=34.4
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEecCCCCCCC-----------------HHHHHHHH-HHHHHcCCccEEecCCCCH
Q 024050 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVP-----------------IEETIGEM-KKLVEEGKIKYIGLSEASP 166 (273)
Q Consensus 105 ~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~-----------------~~~~~~~L-~~l~~~G~ir~iGvS~~~~ 166 (273)
.+.+.+++.++..+ +++.+++.+|.+.-. +.++ ..+.+..+ +.|.+.|.. ++++|||.-
T Consensus 172 qt~~~~~~tl~~~~-~l~~~~i~~y~l~~~-~gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~G~~-~ye~s~fa~ 248 (375)
T PRK05628 172 ESDDDWRASLDAAL-EAGVDHVSAYALIVE-DGTALARRVRRGELPAPDDDVLADRYELADARLSAAGFD-WYEVSNWAR 248 (375)
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEeeeeecC-CCChHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHcCCC-eeeeccccC
Confidence 46777777777555 488888888877622 1111 11233333 445566664 578888753
No 73
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=69.18 E-value=25 Score=32.89 Aligned_cols=60 Identities=20% Similarity=0.270 Sum_probs=39.0
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEe-cCCCC----------CC-CHHH----HHHHHHHHHHcCCccEEecCCCCH
Q 024050 105 GAPDYVRSCCEASLKRLDVDYIDLYYQ-HRVDT----------SV-PIEE----TIGEMKKLVEEGKIKYIGLSEASP 166 (273)
Q Consensus 105 ~~~~~i~~~~~~sL~~L~~d~iDl~~l-h~~~~----------~~-~~~~----~~~~L~~l~~~G~ir~iGvS~~~~ 166 (273)
.+.+.+.+.++..+ +|+.+++.+|.+ |.|.. .. +.++ ...+.+.|.+.|.. .+++++|.-
T Consensus 216 qt~e~~~~tl~~~~-~l~p~~i~~y~l~~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~Gy~-~~~~~~far 291 (453)
T PRK13347 216 QTVESFRETLDKVI-ALSPDRIAVFGYAHVPSRRKNQRLIDEAALPDAEERLRQARAVADRLLAAGYV-PIGLDHFAL 291 (453)
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEEeccccccchhhHHhcCCccCCcCHHHHHHHHHHHHHHHHHCCCE-EEeccceeC
Confidence 46777888777766 488899888876 33321 01 1122 22455778889975 599999864
No 74
>PRK07945 hypothetical protein; Provisional
Probab=68.60 E-value=88 Score=27.98 Aligned_cols=106 Identities=17% Similarity=0.122 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHCCCCccccccCCCC-----CcHHHHHHHHHhc------CCCC-CEEEEeccCcCCCCCccccccCCH
Q 024050 40 EEDGISMIKHAFSKGITFFDTADVYGQ-----NANEVLLGKALKQ------LPRE-KIQVATKFGIAGIGVAGVIVKGAP 107 (273)
Q Consensus 40 ~~~~~~~l~~A~~~Gin~~DtA~~Yg~-----g~se~~lg~~l~~------~~r~-~~~i~tK~~~~~~~~~~~~~~~~~ 107 (273)
.....+++++|.+.|+..+=.+++... +-+...+-+.++. ..++ +|++.--+.... +...
T Consensus 110 ~~~~ee~v~~Ai~~Gl~~i~~TDH~p~~~~~~~~~~~~l~~y~~~i~~l~~ky~~I~Il~GiE~d~~~--------~g~~ 181 (335)
T PRK07945 110 GSPIEEMARTAAALGHEYCALTDHSPRLTVANGLSAERLRKQLDVVAELNEELAPFRILTGIEVDILD--------DGSL 181 (335)
T ss_pred CCCHHHHHHHHHHCCCCEEEEeCCCCCccCCCCCCHHHHHHHHHHHHHHHHhcCCceEEEEeEecccC--------CCCc
Confidence 455789999999999997766666431 1122222222222 1122 222222222111 1112
Q ss_pred HHHHHHHHHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEec
Q 024050 108 DYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGL 161 (273)
Q Consensus 108 ~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGv 161 (273)
+ ..++.|+. .||+ +..+|+... .+..+..+.+.++.+.+.+.-||=
T Consensus 182 ~----~~~~~l~~--~D~v-IgSvH~~~~-~~~~~~~~~l~~ai~~~~~dvlgH 227 (335)
T PRK07945 182 D----QEPELLDR--LDVV-VASVHSKLR-MDAAAMTRRMLAAVANPHTDVLGH 227 (335)
T ss_pred c----hhHHHHHh--CCEE-EEEeecCCC-CCHHHHHHHHHHHhcCCCCeEEec
Confidence 2 22333333 5666 778898643 334566788888888888888874
No 75
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=68.32 E-value=91 Score=28.02 Aligned_cols=25 Identities=20% Similarity=0.062 Sum_probs=15.8
Q ss_pred CCHHHHHHH-------HHHHHHCCCCcccccc
Q 024050 38 VSEEDGISM-------IKHAFSKGITFFDTAD 62 (273)
Q Consensus 38 ~~~~~~~~~-------l~~A~~~Gin~~DtA~ 62 (273)
++.+|..++ .+.|.++|+..++.-.
T Consensus 127 mt~~eI~~i~~~f~~aA~~a~~aGfDgVeih~ 158 (353)
T cd02930 127 LSEEEIEQTIEDFARCAALAREAGYDGVEIMG 158 (353)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEec
Confidence 455555444 3456678999888744
No 76
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=67.79 E-value=33 Score=26.49 Aligned_cols=63 Identities=11% Similarity=0.190 Sum_probs=45.8
Q ss_pred CCCCEEEEeccCcCCCCCccccccCCHHHHHHHHHHHHHHcC--CCcccEEEecCCCCCCCHHHHHHHHHHHHHc
Q 024050 81 PREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLD--VDYIDLYYQHRVDTSVPIEETIGEMKKLVEE 153 (273)
Q Consensus 81 ~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~--~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~ 153 (273)
+|=-+.|+-|++.. ..+..|++.++++++... +...|++++.......+.++..+.|.++.++
T Consensus 46 ~RlG~sVSKKvg~A----------V~RNRiKR~lREafR~~~~~l~g~DiVviaR~~~~~~f~~L~~~l~~~~~~ 110 (138)
T PRK00730 46 CKVGITVSKKFGKA----------HQRNRFKRIVREAFRHVRHNLPGCQIVVSPKGNSQPDFLKLLQDFLQQIPE 110 (138)
T ss_pred ceEEEEEecccccc----------hhHHHHHHHHHHHHHHhhcccCCceEEEEeccccCCCHHHHHHHHHHHHHH
Confidence 45567777787643 347788888888888764 4578999999988776777777777666544
No 77
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=67.60 E-value=31 Score=31.96 Aligned_cols=60 Identities=10% Similarity=-0.082 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEecCCCCC------C-CHH---HHH-HHHHHHHHcCCccEEecCCCCH
Q 024050 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS------V-PIE---ETI-GEMKKLVEEGKIKYIGLSEASP 166 (273)
Q Consensus 105 ~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~------~-~~~---~~~-~~L~~l~~~G~ir~iGvS~~~~ 166 (273)
.+.+.+++.++..+ +|+.+++.++.+.-.... . ..+ +.+ .+.+.|.+.|. +.+++|+|.-
T Consensus 205 qt~e~~~~~l~~~~-~l~~~~is~y~L~~~~~T~l~~~~~~~~~~~~~m~~~~~~~L~~~Gy-~~yei~~far 275 (430)
T PRK08208 205 QTHASWMESLDQAL-VYRPEELFLYPLYVRPLTGLGRRARAWDDQRLSLYRLARDLLLEAGY-TQTSMRMFRR 275 (430)
T ss_pred CCHHHHHHHHHHHH-hCCCCEEEEccccccCCCccchhcCCCHHHHHHHHHHHHHHHHHcCC-eEEeecceec
Confidence 56788888888776 488899999887532211 0 111 222 45566778886 4599999864
No 78
>PRK14017 galactonate dehydratase; Provisional
Probab=67.21 E-value=99 Score=28.07 Aligned_cols=154 Identities=12% Similarity=0.090 Sum_probs=90.3
Q ss_pred CHHHHHHHHHHHHHCCCCcccccc-----CCCCC---cHHHHHHHHHhcCCCCCEEEEeccCcCCCCCccccccCCHHHH
Q 024050 39 SEEDGISMIKHAFSKGITFFDTAD-----VYGQN---ANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYV 110 (273)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~DtA~-----~Yg~g---~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i 110 (273)
+.++..+.+..+.+.|++.|=.-- .++.. ..+...=+++++.-.+++.|..=... .++.+.
T Consensus 124 ~~~~~~~~a~~~~~~Gf~~~KiKv~~~~~~~~~~~~~~~d~~~i~avr~~~g~~~~l~vDaN~----------~w~~~~- 192 (382)
T PRK14017 124 RPADVAEAARARVERGFTAVKMNGTEELQYIDSPRKVDAAVARVAAVREAVGPEIGIGVDFHG----------RVHKPM- 192 (382)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCcCCccccccHHHHHHHHHHHHHHHHHhCCCCeEEEECCC----------CCCHHH-
Confidence 567777888888899998775421 01100 01111222344322224434333221 133433
Q ss_pred HHHHHHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCcc-EEecCCCCHHHHHHHhhcCCceEEeeeccccc
Q 024050 111 RSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPGTIRRAHAVHPITAVQMEWSLWT 189 (273)
Q Consensus 111 ~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~~l~~ 189 (273)
..+.++.|. .+++.++..|-... .++.+.+|.+...+. ..|=|.++...+..+++..-++++|+..+..-
T Consensus 193 ---A~~~~~~l~--~~~~~~iEeP~~~~----d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~a~d~v~~d~~~~G 263 (382)
T PRK14017 193 ---AKVLAKELE--PYRPMFIEEPVLPE----NAEALPEIAAQTSIPIATGERLFSRWDFKRVLEAGGVDIIQPDLSHAG 263 (382)
T ss_pred ---HHHHHHhhc--ccCCCeEECCCCcC----CHHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcCCCCeEecCccccC
Confidence 233333332 24556666664322 357788888877665 45556688899999998888889998777653
Q ss_pred cc-ccccHHHHHHHhCCeEEeccc
Q 024050 190 RD-IEEEIIPLCRELGIGIVPYSP 212 (273)
Q Consensus 190 ~~-~~~~l~~~~~~~gi~v~a~sp 212 (273)
-- .-..+.+.|+++||.++..+.
T Consensus 264 Git~~~~ia~~A~~~gi~~~~h~~ 287 (382)
T PRK14017 264 GITECRKIAAMAEAYDVALAPHCP 287 (382)
T ss_pred CHHHHHHHHHHHHHcCCeEeecCC
Confidence 21 126799999999999998764
No 79
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=66.67 E-value=14 Score=33.32 Aligned_cols=97 Identities=11% Similarity=0.034 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHcCCCcccEEEecCCCCC---CCHHHHHHHHHHHHHcCCccEEecCCCCHHHHHHHhhcCCceEEeee--
Q 024050 110 VRSCCEASLKRLDVDYIDLYYQHRVDTS---VPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHPITAVQME-- 184 (273)
Q Consensus 110 i~~~~~~sL~~L~~d~iDl~~lh~~~~~---~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~-- 184 (273)
-+-.+-+.|.++|+++|++-..-+|... .+.++.++.+. +...++..++. .+.+.++.+++... +.+.+.
T Consensus 69 ~Ki~ia~~L~~~GV~~IEvGs~vspk~vPqmad~~ev~~~i~---~~~~~~~~~l~-~n~~die~A~~~g~-~~v~i~~s 143 (347)
T PLN02746 69 VKVELIQRLVSSGLPVVEATSFVSPKWVPQLADAKDVMAAVR---NLEGARFPVLT-PNLKGFEAAIAAGA-KEVAVFAS 143 (347)
T ss_pred HHHHHHHHHHHcCCCEEEECCCcCcccccccccHHHHHHHHH---hccCCceeEEc-CCHHHHHHHHHcCc-CEEEEEEe
Confidence 4556667799999999999866555322 22334555553 33335555554 47788888887732 222222
Q ss_pred cc-------ccccccc-----ccHHHHHHHhCCeEEecc
Q 024050 185 WS-------LWTRDIE-----EEIIPLCRELGIGIVPYS 211 (273)
Q Consensus 185 ~~-------l~~~~~~-----~~l~~~~~~~gi~v~a~s 211 (273)
.| +-....+ .+++++|+++|+.|.++-
T Consensus 144 ~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~i 182 (347)
T PLN02746 144 ASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYV 182 (347)
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 22 2111111 478999999999986443
No 80
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=66.54 E-value=29 Score=29.04 Aligned_cols=41 Identities=15% Similarity=0.139 Sum_probs=29.8
Q ss_pred CCHHHHHHHHHHHHHCCCCccccccCCCCCc---HHHHHHHHHh
Q 024050 38 VSEEDGISMIKHAFSKGITFFDTADVYGQNA---NEVLLGKALK 78 (273)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~---se~~lg~~l~ 78 (273)
.+.++..++++.|.+.|++-+=..++|-+|+ .+..+.+.+.
T Consensus 17 ~s~eesl~ml~~A~~qGvt~iVaTsHh~~g~y~n~~~~v~~~~~ 60 (254)
T COG4464 17 KSLEESLAMLREAVRQGVTKIVATSHHLHGRYENPIEKVKEKAN 60 (254)
T ss_pred CcHHHHHHHHHHHHHcCceEEeecccccCCccCChHHHHHHHHH
Confidence 4889999999999999999766666665552 4444554444
No 81
>PRK05414 urocanate hydratase; Provisional
Probab=65.75 E-value=20 Score=33.83 Aligned_cols=115 Identities=18% Similarity=0.191 Sum_probs=76.0
Q ss_pred HHHHHHCCCCcc--ccccCCC--------CCcHHHHHHHHHhc---CCCCCEEEEeccCcCCCCCc---------ccccc
Q 024050 47 IKHAFSKGITFF--DTADVYG--------QNANEVLLGKALKQ---LPREKIQVATKFGIAGIGVA---------GVIVK 104 (273)
Q Consensus 47 l~~A~~~Gin~~--DtA~~Yg--------~g~se~~lg~~l~~---~~r~~~~i~tK~~~~~~~~~---------~~~~~ 104 (273)
++..-+.|+..+ =||..|- +|.-|.++..+=+. ..+.++|+++-++...-..+ ....+
T Consensus 118 f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~a~rk~f~g~L~G~~~lTaGLGGMgGAQPlA~~mag~v~i~vE 197 (556)
T PRK05414 118 FNELEAKGLTMYGQMTAGSWIYIGSQGIVQGTYETFAEAARQHFGGDLAGRLVLTAGLGGMGGAQPLAATMAGAVCLAVE 197 (556)
T ss_pred HHHHHHcccccccCccccceeEEcCceeeecHHHHHHHHHHHhcCCCCceeEEEEecCCccccccHHHHHhcCceEEEEE
Confidence 444456677632 2333332 56667665544443 23667888888775431110 01123
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEecCCCCHHHHHHHhhc
Q 024050 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAV 175 (273)
Q Consensus 105 ~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~ 175 (273)
.++..| -+|+.+.|+|.+. .++++.++..++.+++|+..+||+-..-++.++++.+.
T Consensus 198 vd~~ri-------~kR~~~gyld~~~-------~~Ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~~ 254 (556)
T PRK05414 198 VDESRI-------DKRLRTGYLDEKA-------DDLDEALALAEEAKAAGEPLSIGLLGNAADVLPELVRR 254 (556)
T ss_pred ECHHHH-------HHHHhCCcceeEc-------CCHHHHHHHHHHHHHcCCceEEEEeccHHHHHHHHHHc
Confidence 344444 4577788998775 66899999999999999999999999888999998876
No 82
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=65.69 E-value=19 Score=33.81 Aligned_cols=115 Identities=20% Similarity=0.218 Sum_probs=75.6
Q ss_pred HHHHHHCCCCcc--ccccCCC--------CCcHHHHHHHHHhc---CCCCCEEEEeccCcCCCCCc---------ccccc
Q 024050 47 IKHAFSKGITFF--DTADVYG--------QNANEVLLGKALKQ---LPREKIQVATKFGIAGIGVA---------GVIVK 104 (273)
Q Consensus 47 l~~A~~~Gin~~--DtA~~Yg--------~g~se~~lg~~l~~---~~r~~~~i~tK~~~~~~~~~---------~~~~~ 104 (273)
++..-+.|+..+ =||..|- +|.-|.++..+=+. ..+..+|+++-++...-..+ ....+
T Consensus 109 f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~f~~~L~G~~~lTaGLGGMgGAQPlA~~mag~v~i~vE 188 (545)
T TIGR01228 109 FHELEAKGLMMYGQMTAGSWIYIGTQGILQGTYETFAELARQHFGGSLKGKWVLTAGLGGMGGAQPLAVTMNGGVSIAVE 188 (545)
T ss_pred HHHHHHcccccccCccccceEEEcCcceeecHHHHHHHHHHHhcCCCCceeEEEEeCCCccccccHHHHHHcCceEEEEE
Confidence 444456677632 2333332 56667665544443 23667888888775431110 01123
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEecCCCCHHHHHHHhhc
Q 024050 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAV 175 (273)
Q Consensus 105 ~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~ 175 (273)
.++..| -+|+.+.|+|.+. .++++.++..++.+++|+..+||+-..-++.++++.+.
T Consensus 189 vd~~ri-------~kR~~~gyld~~~-------~~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~r 245 (545)
T TIGR01228 189 VDESRI-------DKRLETKYCDEQT-------DSLDEALARAEEAKAEGKPISIGLLGNAAEVLPELLKR 245 (545)
T ss_pred ECHHHH-------HHHHhcCcceeEc-------CCHHHHHHHHHHHHHcCCceEEEeeccHHHHHHHHHHc
Confidence 344444 4577788998765 66899999999999999999999999888999998876
No 83
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=65.32 E-value=61 Score=26.42 Aligned_cols=41 Identities=15% Similarity=0.106 Sum_probs=26.2
Q ss_pred cccEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEecCCCCHHHH
Q 024050 125 YIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTI 169 (273)
Q Consensus 125 ~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l 169 (273)
.+|.++||..++ .+..+.+.+......++.+|++......+
T Consensus 73 ~~d~Vqlhg~e~----~~~~~~l~~~~~~~~i~~i~~~~~~~~~~ 113 (203)
T cd00405 73 GLDVVQLHGDES----PEYCAQLRARLGLPVIKAIRVKDEEDLEK 113 (203)
T ss_pred CCCEEEECCCCC----HHHHHHHHhhcCCcEEEEEecCChhhHHH
Confidence 378999998642 23344444433456889999998765443
No 84
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=64.87 E-value=45 Score=30.53 Aligned_cols=143 Identities=17% Similarity=0.187 Sum_probs=75.3
Q ss_pred CHHHHHHHHHHHHHCCCC-ccccccCCCCCcHHHHHHHHHhcCCCCCEEEEeccCcCCC--CCccccccCCHHHHHHHHH
Q 024050 39 SEEDGISMIKHAFSKGIT-FFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGI--GVAGVIVKGAPDYVRSCCE 115 (273)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin-~~DtA~~Yg~g~se~~lg~~l~~~~r~~~~i~tK~~~~~~--~~~~~~~~~~~~~i~~~~~ 115 (273)
+.++-.+=++.|++.|-. .-|-+. .| .-..+-...|+. ..+-|.|= +.... .......+.+.+.+.+.++
T Consensus 75 d~~~E~~K~~~A~~~GADtiMDLSt-Gg--dl~~iR~~il~~---s~vpvGTV-PiYqa~~~~~~~~~~mt~d~~~~~ie 147 (423)
T TIGR00190 75 DIEEEVEKALIAIKYGADTVMDLST-GG--DLDEIRKAILDA---VPVPVGTV-PIYQAAEKVHGAVEDMDEDDMFRAIE 147 (423)
T ss_pred CHHHHHHHHHHHHHcCCCeEeeccC-CC--CHHHHHHHHHHc---CCCCccCc-cHHHHHHHhcCChhhCCHHHHHHHHH
Confidence 445555568999999975 445553 22 233333333332 12212221 00000 0001123567888888888
Q ss_pred HHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEecCCCCHHHHHHHhhcCCceEEeeeccccccccccc
Q 024050 116 ASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRDIEEE 195 (273)
Q Consensus 116 ~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~~l~~~~~~~~ 195 (273)
+..+ |-+|.+-+|.- -+.+.++.++++|++ .|+-+-.-..+...+... ..-|++...+ ..
T Consensus 148 ~qa~----dGVDfmTiH~G-------i~~~~~~~~~~~~R~--~giVSRGGs~~~~WM~~~------~~ENPlye~f-D~ 207 (423)
T TIGR00190 148 KQAK----DGVDFMTIHAG-------VLLEYVERLKRSGRI--TGIVSRGGAILAAWMLHH------HKENPLYKNF-DY 207 (423)
T ss_pred HHHH----hCCCEEEEccc-------hhHHHHHHHHhCCCc--cCeecCcHHHHHHHHHHc------CCcCchHHHH-HH
Confidence 7776 77999999973 367888999999965 566554433333322211 1123333332 45
Q ss_pred HHHHHHHhCCeEE
Q 024050 196 IIPLCRELGIGIV 208 (273)
Q Consensus 196 l~~~~~~~gi~v~ 208 (273)
+++.|+++++.+-
T Consensus 208 lLeI~~~yDVtlS 220 (423)
T TIGR00190 208 ILEIAKEYDVTLS 220 (423)
T ss_pred HHHHHHHhCeeee
Confidence 6666666666553
No 85
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=64.59 E-value=1.1e+02 Score=27.42 Aligned_cols=152 Identities=14% Similarity=0.137 Sum_probs=87.8
Q ss_pred CHHHHHHHHHHHHHCCCCccccccCCCC--C-----cHHHHHHHHHhcCCCCCEEEEeccCcCCCCCccccccCCHHHHH
Q 024050 39 SEEDGISMIKHAFSKGITFFDTADVYGQ--N-----ANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVR 111 (273)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~--g-----~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~ 111 (273)
+.++..+.++.+++.|++.|=.--..++ + ...+.+ +++++.-.+++-|..=... .++.+...
T Consensus 120 ~~~~~~~~a~~~~~~Gf~~~Kikvg~~~~~~~~~~~~d~~~v-~avr~~~g~~~~l~vDan~----------~~~~~~A~ 188 (341)
T cd03327 120 DLDELPDEAKEYLKEGYRGMKMRFGYGPSDGHAGLRKNVELV-RAIREAVGYDVDLMLDCYM----------SWNLNYAI 188 (341)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCcchHHHHHHHHHH-HHHHHHhCCCCcEEEECCC----------CCCHHHHH
Confidence 5677777888888999987643211111 0 112222 2344311223333322111 13343322
Q ss_pred HHHHHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCcc-EEecCCCCHHHHHHHhhcCCceEEeeecccccc
Q 024050 112 SCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPGTIRRAHAVHPITAVQMEWSLWTR 190 (273)
Q Consensus 112 ~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~~l~~~ 190 (273)
+.+++|. ..++.++..|-.. +.++.+.+|++...+. ..|=|.++...+..+++...++++|+..+..--
T Consensus 189 ----~~~~~l~--~~~~~~iEeP~~~----~d~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~~a~d~i~~d~~~~GG 258 (341)
T cd03327 189 ----KMARALE--KYELRWIEEPLIP----DDIEGYAELKKATGIPISTGEHEYTVYGFKRLLEGRAVDILQPDVNWVGG 258 (341)
T ss_pred ----HHHHHhh--hcCCccccCCCCc----cCHHHHHHHHhcCCCCeEeccCccCHHHHHHHHHcCCCCEEecCccccCC
Confidence 2333332 2455566655432 3466777888877665 445566788899999988888899987766532
Q ss_pred cc-cccHHHHHHHhCCeEEecc
Q 024050 191 DI-EEEIIPLCRELGIGIVPYS 211 (273)
Q Consensus 191 ~~-~~~l~~~~~~~gi~v~a~s 211 (273)
-. -..+...|+++|+.+...+
T Consensus 259 it~~~~i~~~A~~~g~~~~~h~ 280 (341)
T cd03327 259 ITELKKIAALAEAYGVPVVPHA 280 (341)
T ss_pred HHHHHHHHHHHHHcCCeecccc
Confidence 11 1679999999999988764
No 86
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=64.43 E-value=11 Score=27.49 Aligned_cols=54 Identities=24% Similarity=0.191 Sum_probs=40.3
Q ss_pred CCCCHHHHHHHhhcCCceEEeeecccccccc-cccHHHHHHHhCCeEEecccCCCc
Q 024050 162 SEASPGTIRRAHAVHPITAVQMEWSLWTRDI-EEEIIPLCRELGIGIVPYSPLGRG 216 (273)
Q Consensus 162 S~~~~~~l~~~~~~~~~~~~q~~~~l~~~~~-~~~l~~~~~~~gi~v~a~spl~~G 216 (273)
|.++...+.++++...++++|+...-.---. -..+.+.|+++|+.+...+. ..+
T Consensus 3 ~~~~~~~~~~li~~~a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~-~~~ 57 (111)
T PF13378_consen 3 SLFSLHDFRRLIEAGAVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM-ESG 57 (111)
T ss_dssp TSSSHHHHHHHHHTTSCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS-SSH
T ss_pred CCCCHHHHHHHHHcCCCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC-CCc
Confidence 4567888889998888889998766543211 17799999999999999986 544
No 87
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=64.30 E-value=53 Score=29.90 Aligned_cols=85 Identities=16% Similarity=0.036 Sum_probs=58.6
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHHc------CCccEEecCCCCHHHHHHHhhcCCceEEeeeccccccccc-ccHHHHH
Q 024050 128 LYYQHRVDTSVPIEETIGEMKKLVEE------GKIKYIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRDIE-EEIIPLC 200 (273)
Q Consensus 128 l~~lh~~~~~~~~~~~~~~L~~l~~~------G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~~l~~~~~~-~~l~~~~ 200 (273)
++++..|-+..+..+.++.+.+|.+. +.=-..|=|.++...+.++++..-.+++|+..+-.---.+ ..+.+.|
T Consensus 229 ~~~iEqP~~~~d~~~~~~~~a~Lr~~~~~~~~~iPIa~dEs~~t~~d~~~li~~~a~div~~kl~k~GGIt~a~kia~lA 308 (369)
T cd03314 229 PLRIEGPMDAGSREAQIERMAALRAELDRRGVGVRIVADEWCNTLEDIRDFADAGAAHMVQIKTPDLGGIDNTIDAVLYC 308 (369)
T ss_pred cEEEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecCCcCCHHHHHHHHHhCCCCEEEecchhcCCHHHHHHHHHHH
Confidence 35666665433323456777777766 3333445566888899999888888899988776442212 6789999
Q ss_pred HHhCCeEEeccc
Q 024050 201 RELGIGIVPYSP 212 (273)
Q Consensus 201 ~~~gi~v~a~sp 212 (273)
..+||.++..+.
T Consensus 309 ~a~Gi~~~~h~~ 320 (369)
T cd03314 309 KEHGVGAYLGGS 320 (369)
T ss_pred HHcCCcEEEeCC
Confidence 999999998654
No 88
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=64.03 E-value=89 Score=26.37 Aligned_cols=27 Identities=15% Similarity=0.183 Sum_probs=22.5
Q ss_pred CCHHHHHHHHHHHHHCCCCccccccCC
Q 024050 38 VSEEDGISMIKHAFSKGITFFDTADVY 64 (273)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gin~~DtA~~Y 64 (273)
.+.++..++++...+.|+..|+....-
T Consensus 16 ~s~e~~~~i~~~L~~~GV~~IEvg~~~ 42 (265)
T cd03174 16 FSTEDKLEIAEALDEAGVDSIEVGSGA 42 (265)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeccCc
Confidence 478999999999999999988877543
No 89
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=63.88 E-value=41 Score=26.96 Aligned_cols=98 Identities=10% Similarity=0.064 Sum_probs=63.2
Q ss_pred CCCCccccccCCC-------CCcHHHHHHHHHhcCCCCCEEEEeccCcCCCCCcccc--ccCCHHHHHHHHHHHHHHcCC
Q 024050 53 KGITFFDTADVYG-------QNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVI--VKGAPDYVRSCCEASLKRLDV 123 (273)
Q Consensus 53 ~Gin~~DtA~~Yg-------~g~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~--~~~~~~~i~~~~~~sL~~L~~ 123 (273)
++|-++||-..-- .|+.+..+-..|+ ..|-|+.|.++-.-.+..++..+ ....++.+.+.+++.|++-+.
T Consensus 79 ~~v~fiDTD~itT~~~~~~y~gr~~P~~~~~i~-~~r~DL~lLl~p~t~wvaDG~R~~~~~~~R~~F~~~l~~~L~~~~~ 157 (187)
T COG3172 79 NKVAFIDTDFLTTQAFCKKYEGREHPFLQALIA-EYRFDLTLLLEPNTPWVADGLRSLGSSVQRQEFQNLLEQMLEENNI 157 (187)
T ss_pred CceEEEeccHHHHHHHHHHHcccCCchHHHHHh-hcccceEEEcCCCCceeCCCccccccHhHHHHHHHHHHHHHHHhCC
Confidence 4888999965321 3445556666666 56788888776332222222211 123678899999999999986
Q ss_pred CcccEEEecCCCCCCCHHHHHHHHHHHHHcC
Q 024050 124 DYIDLYYQHRVDTSVPIEETIGEMKKLVEEG 154 (273)
Q Consensus 124 d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G 154 (273)
.|+ -|..++-.+.....+++.+++..++
T Consensus 158 ~~v---~i~~~~y~eR~~~~~~aV~ell~~~ 185 (187)
T COG3172 158 PFV---VIEGEDYLERYLQAVEAVEELLGEK 185 (187)
T ss_pred cEE---EEcCCCHHHHHHHHHHHHHHHHhcc
Confidence 654 4556555555667888888887766
No 90
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=63.72 E-value=36 Score=31.75 Aligned_cols=60 Identities=17% Similarity=0.284 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEe-cCCC----------CCC-CHH---HHH-HHHHHHHHcCCccEEecCCCCH
Q 024050 105 GAPDYVRSCCEASLKRLDVDYIDLYYQ-HRVD----------TSV-PIE---ETI-GEMKKLVEEGKIKYIGLSEASP 166 (273)
Q Consensus 105 ~~~~~i~~~~~~sL~~L~~d~iDl~~l-h~~~----------~~~-~~~---~~~-~~L~~l~~~G~ir~iGvS~~~~ 166 (273)
.+.+.+.+.++..++ |+.+++.+|.+ +.|. ... ..+ +.+ .+.+.|.+.|. ..+++++|.-
T Consensus 215 qt~e~~~~tl~~~~~-l~~~~is~y~L~~~p~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~L~~~Gy-~~~~~~~fa~ 290 (455)
T TIGR00538 215 QTKESFAKTLEKVAE-LNPDRLAVFNYAHVPWVKPAQRKIPEAALPSAEEKLDILQETIAFLTEAGY-QFIGMDHFAK 290 (455)
T ss_pred CCHHHHHHHHHHHHh-cCCCEEEEecCccccchhHHHhcccccCCCCHHHHHHHHHHHHHHHHHCCC-EEEeccceeC
Confidence 468888888886665 89999999877 2221 001 112 223 34455667786 5699999864
No 91
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=63.55 E-value=94 Score=27.67 Aligned_cols=94 Identities=14% Similarity=0.203 Sum_probs=54.2
Q ss_pred HHHHHcCCCcccEEEecC-CCC-CCCHHHHHHHHHHHHHcCCcc-EEecCCC---CHHHHHHHhhcCC---ceEEeeecc
Q 024050 116 ASLKRLDVDYIDLYYQHR-VDT-SVPIEETIGEMKKLVEEGKIK-YIGLSEA---SPGTIRRAHAVHP---ITAVQMEWS 186 (273)
Q Consensus 116 ~sL~~L~~d~iDl~~lh~-~~~-~~~~~~~~~~L~~l~~~G~ir-~iGvS~~---~~~~l~~~~~~~~---~~~~q~~~~ 186 (273)
+.-+.+|.|+||+-+.-. |+. +...++....++...+.=.+= .|..|.. +++.|+++++... +-++-. +
T Consensus 83 ~q~~~~GAd~Idl~~~s~dp~~~d~~~~e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaale~~~g~~pLInSa--t 160 (319)
T PRK04452 83 KCVEEYGADMITLHLISTDPNGKDKSPEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVAEAAEGERCLLGSA--E 160 (319)
T ss_pred HHHHHhCCCEEEEECCCCCcccccchHHHHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHHHHhCCCCCEEEEC--C
Confidence 444678888888875432 322 223344444444443322222 2555533 7888998887632 323222 2
Q ss_pred cccccccccHHHHHHHhCCeEEecccCC
Q 024050 187 LWTRDIEEEIIPLCRELGIGIVPYSPLG 214 (273)
Q Consensus 187 l~~~~~~~~l~~~~~~~gi~v~a~spl~ 214 (273)
. .+. +.+.+.|+++|..|++.+|..
T Consensus 161 ~--en~-~~i~~lA~~y~~~Vva~s~~D 185 (319)
T PRK04452 161 E--DNY-KKIAAAAMAYGHAVIAWSPLD 185 (319)
T ss_pred H--HHH-HHHHHHHHHhCCeEEEEcHHH
Confidence 1 122 779999999999999998653
No 92
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=63.06 E-value=58 Score=29.40 Aligned_cols=27 Identities=15% Similarity=0.124 Sum_probs=18.3
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEec
Q 024050 105 GAPDYVRSCCEASLKRLDVDYIDLYYQH 132 (273)
Q Consensus 105 ~~~~~i~~~~~~sL~~L~~d~iDl~~lh 132 (273)
.+.+.+++.++... +++.+++.+|.+.
T Consensus 163 qt~e~~~~~l~~~~-~l~~~~is~y~l~ 189 (374)
T PRK05799 163 QTLEDWKETLEKVV-ELNPEHISCYSLI 189 (374)
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEEeccE
Confidence 45677777776665 3777888777654
No 93
>COG1801 Uncharacterized conserved protein [Function unknown]
Probab=62.95 E-value=97 Score=26.76 Aligned_cols=79 Identities=6% Similarity=-0.024 Sum_probs=50.0
Q ss_pred HHCCCCcccc-ccCCCCCcHHHHHHHHHhcCCCCCEEEEeccCcCCCCCccccccCCH---HHHHHHHHHHHHHcCCCcc
Q 024050 51 FSKGITFFDT-ADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAP---DYVRSCCEASLKRLDVDYI 126 (273)
Q Consensus 51 ~~~Gin~~Dt-A~~Yg~g~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~---~~i~~~~~~sL~~L~~d~i 126 (273)
+...+|.+.. +..|.. .+++.+-+|.+ ...+++..+-|+...... ..... ..+.+.+.+-++-|+ +.+
T Consensus 33 y~~~f~~VEiN~TFYa~-p~~~t~~~W~~-~~p~~FrFsvK~~~~iTH-----~~~l~~~~~~~~~~~~~~~~~L~-~kl 104 (263)
T COG1801 33 YASHFNTVEINSTFYAP-PSPETVLRWAE-ETPDDFRFSVKAPRAITH-----QRRLKECDFELWEFFLEPLAPLG-ERL 104 (263)
T ss_pred HhccCCEEEECCcccCC-CCHHHHHHHHH-hCCCCeEEEEEecccccc-----hhhhccchHHHHHHHHHHHHhhh-ccc
Confidence 3334554432 225654 37777888888 578899999998765521 11122 344555555566777 699
Q ss_pred cEEEecCCCCC
Q 024050 127 DLYYQHRVDTS 137 (273)
Q Consensus 127 Dl~~lh~~~~~ 137 (273)
..+++.-|..-
T Consensus 105 g~il~Q~Ppsf 115 (263)
T COG1801 105 GPILFQLPPSF 115 (263)
T ss_pred ceEEEecCCcc
Confidence 99999988654
No 94
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=62.45 E-value=1.3e+02 Score=27.65 Aligned_cols=49 Identities=10% Similarity=0.243 Sum_probs=35.0
Q ss_pred CCHHHHHHHHHHHHHCCCCccccccCCCCC----cHHHHHHHHHhc-----CCCCCEEEEecc
Q 024050 38 VSEEDGISMIKHAFSKGITFFDTADVYGQN----ANEVLLGKALKQ-----LPREKIQVATKF 91 (273)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g----~se~~lg~~l~~-----~~r~~~~i~tK~ 91 (273)
....++.+++..|++.|- .+.|++. .+-+.+.+.+.+ ...+|+||++-+
T Consensus 78 ~ts~~a~~Av~~al~Sgk-----~N~Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC 135 (447)
T KOG0259|consen 78 RTSQEAEQAVVDALRSGK-----GNGYAPSVGILPARRAVAEYLNRDLPNKLTADDVVLTSGC 135 (447)
T ss_pred cCCHHHHHHHHHHHhcCC-----CCCcCCccccHHHHHHHHHHhhcCCCCccCcCceEEeccc
Confidence 356788888888888873 2367643 466777887654 568899998865
No 95
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=62.21 E-value=52 Score=32.12 Aligned_cols=68 Identities=13% Similarity=0.141 Sum_probs=46.1
Q ss_pred HHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEecC-CCCHHHHHHHhhcCCceEEeeecc
Q 024050 119 KRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS-EASPGTIRRAHAVHPITAVQMEWS 186 (273)
Q Consensus 119 ~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~q~~~~ 186 (273)
..+|.|++-+++..........+.....+.+......++.+||- |-+++.+.++.+...++++|++-+
T Consensus 20 ~~~gaD~iGfIf~~~SpR~V~~~~~a~~i~~~l~~~~v~~VgVfv~~~~~~i~~~~~~~~ld~vQLHG~ 88 (610)
T PRK13803 20 VDMLPDFIGFIFYEKSPRFVGNKFLAPNLEKAIRKAGGRPVGVFVNESAKAMLKFSKKNGIDFVQLHGA 88 (610)
T ss_pred HHcCCCEEEEEecCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEECCC
Confidence 44899999998655433333344413333333333357789995 788999999999899999999754
No 96
>COG4943 Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]
Probab=62.14 E-value=35 Score=32.02 Aligned_cols=121 Identities=21% Similarity=0.268 Sum_probs=65.8
Q ss_pred HHHHHHHhcCCCCCEEEEeccCcCCCCCccccccCCHHHHHHHHHHHHHHcCCC--cccEEEecCCCCCCCHHHHHHHHH
Q 024050 71 VLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVD--YIDLYYQHRVDTSVPIEETIGEMK 148 (273)
Q Consensus 71 ~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d--~iDl~~lh~~~~~~~~~~~~~~L~ 148 (273)
+-+|.+|+ .+.+++|+-.+.... .....+..-+.+-+++-++. .|-+=+-.+- -.+.......+.
T Consensus 342 ~dlG~~L~--~~~~l~VsINl~a~D---------l~s~rli~~~~~~l~~~~v~pqQI~lElTER~--f~D~~~~~~iI~ 408 (524)
T COG4943 342 RDLGDLLR--QHRDLHVSINLSASD---------LASPRLIDRLNRKLAQYQVRPQQIALELTERT--FADPKKMTPIIL 408 (524)
T ss_pred HHhHHHHH--hCcceEEEEeeeehh---------hcCchHHHHHHHHHHhcCcChHHheeehhhhh--hcCchhhhHHHH
Confidence 55777777 355777777665443 33445667777777777652 1111110000 022345678889
Q ss_pred HHHHcCCccEE-----ecCCCCHHHHHHHhhcCCceEEee--------ecccccccccccHHHHHHHhCCeEEec
Q 024050 149 KLVEEGKIKYI-----GLSEASPGTIRRAHAVHPITAVQM--------EWSLWTRDIEEEIIPLCRELGIGIVPY 210 (273)
Q Consensus 149 ~l~~~G~ir~i-----GvS~~~~~~l~~~~~~~~~~~~q~--------~~~l~~~~~~~~l~~~~~~~gi~v~a~ 210 (273)
++++.|.--+| |-|| ...|..+ +++..-+ .++-...-....+++.|+++|+.++|-
T Consensus 409 r~ReaG~~IyIDDFGTGYSn--L~YLq~L----~VDaLKIDKsFvdtlg~~~a~~~I~~hII~MAk~L~L~iVaE 477 (524)
T COG4943 409 RLREAGHEIYIDDFGTGYSN--LHYLQSL----PVDALKIDKSFVDTLGTDSASHLIAPHIIEMAKSLGLKIVAE 477 (524)
T ss_pred HHHhcCCeEEEccCcCcchh--HHHHhhC----CccceeccHHHHHhhccCcccchhHHHHHHHHHHcCCcEEee
Confidence 99999995554 3333 2222221 1122111 222222222367999999999999983
No 97
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=61.88 E-value=49 Score=29.99 Aligned_cols=60 Identities=15% Similarity=0.074 Sum_probs=36.7
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEec-CCCCC-----------CC-H----HHHHHHHHHHHHcCCccEEecCCCCH
Q 024050 105 GAPDYVRSCCEASLKRLDVDYIDLYYQH-RVDTS-----------VP-I----EETIGEMKKLVEEGKIKYIGLSEASP 166 (273)
Q Consensus 105 ~~~~~i~~~~~~sL~~L~~d~iDl~~lh-~~~~~-----------~~-~----~~~~~~L~~l~~~G~ir~iGvS~~~~ 166 (273)
.+.+.+++.++.. .+++.+++.+|.+. .|... .+ . +....+.+.|.+.|.. .+++|+|.-
T Consensus 164 qt~~~~~~~l~~~-~~l~~~~i~~y~l~~~pgT~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy~-~~~~~~fa~ 240 (377)
T PRK08599 164 QTIEDFKESLAKA-LALDIPHYSAYSLILEPKTVFYNLMRKGKLRLPGEDLEAEMYEYLMDEMEAHGFH-QYEISNFAK 240 (377)
T ss_pred CCHHHHHHHHHHH-HccCCCEEeeeceeecCCChhHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHcCCc-EeeeeeeeC
Confidence 4677777777764 55888888887653 22110 01 1 1123466777788864 588988863
No 98
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=60.40 E-value=52 Score=30.08 Aligned_cols=60 Identities=15% Similarity=0.119 Sum_probs=39.6
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEecC-CCCC-----------CC-HH---HHH-HHHHHHHHcCCccEEecCCCCH
Q 024050 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHR-VDTS-----------VP-IE---ETI-GEMKKLVEEGKIKYIGLSEASP 166 (273)
Q Consensus 105 ~~~~~i~~~~~~sL~~L~~d~iDl~~lh~-~~~~-----------~~-~~---~~~-~~L~~l~~~G~ir~iGvS~~~~ 166 (273)
.+.+.+++.++..++ |+.++|.+|.+.- |... .+ .+ +.+ .+.+.|.+.|..+ +++|||.-
T Consensus 174 qt~e~~~~~l~~~~~-l~p~his~y~L~i~~gT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~~-yeis~fa~ 250 (390)
T PRK06582 174 QTLKDWQEELKQAMQ-LATSHISLYQLTIEKGTPFYKLFKEGNLILPHSDAAAEMYEWTNHYLESKKYFR-YEISNYAK 250 (390)
T ss_pred CCHHHHHHHHHHHHh-cCCCEEEEecCEEccCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCce-eeceeeeC
Confidence 467888888888886 8999999998863 3210 01 11 222 3445677778755 78998863
No 99
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=60.26 E-value=59 Score=29.83 Aligned_cols=83 Identities=8% Similarity=0.010 Sum_probs=58.9
Q ss_pred ccEEEecCCCCCCCHHHHHHHHHHHHHcCCcc-EEecCCCCHHHHHHHhhcCCceEEeeecccccccc-cccHHHHHHHh
Q 024050 126 IDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRDI-EEEIIPLCREL 203 (273)
Q Consensus 126 iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~~l~~~~~-~~~l~~~~~~~ 203 (273)
.++.++..|-.. +.++.+.+|++.-.+. ..|=|.++...++.+++..-++++|+...-.---. -..+...|+.+
T Consensus 232 ~~l~~iEeP~~~----~d~~~~~~L~~~~~iPIa~dEs~~~~~~~~~li~~~a~dii~~d~~~~GGit~~~kia~lA~~~ 307 (404)
T PRK15072 232 YRLFWLEDPTPA----ENQEAFRLIRQHTTTPLAVGEVFNSIWDCKQLIEEQLIDYIRTTVTHAGGITHLRRIADFAALY 307 (404)
T ss_pred cCCcEEECCCCc----cCHHHHHHHHhcCCCCEEeCcCccCHHHHHHHHHcCCCCEEecCccccCcHHHHHHHHHHHHHc
Confidence 455555555332 2367778888876665 55666788999999999888899998776643211 16789999999
Q ss_pred CCeEEeccc
Q 024050 204 GIGIVPYSP 212 (273)
Q Consensus 204 gi~v~a~sp 212 (273)
|+.++.++.
T Consensus 308 gi~~~~h~~ 316 (404)
T PRK15072 308 QVRTGSHGP 316 (404)
T ss_pred CCceeeccC
Confidence 999998654
No 100
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=60.23 E-value=62 Score=29.80 Aligned_cols=144 Identities=16% Similarity=0.171 Sum_probs=79.1
Q ss_pred CHHHHHHHHHHHHHCCCC-ccccccCCCCCcHHHHHHHHHhcCCCCCEEEEeccCcCC-----CCCccccccCCHHHHHH
Q 024050 39 SEEDGISMIKHAFSKGIT-FFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAG-----IGVAGVIVKGAPDYVRS 112 (273)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin-~~DtA~~Yg~g~se~~lg~~l~~~~r~~~~i~tK~~~~~-----~~~~~~~~~~~~~~i~~ 112 (273)
+.++-.+=++.|.+.|-. .-|-+. .| .-..+-.+.|+. ..+-|.|= +... ........+.+.+.+.+
T Consensus 75 d~~~E~~K~~~A~~~GADtiMDLSt-gg--dl~~iR~~il~~---s~vpvGTV-PiYqa~~~~~~k~~~~~~mt~d~~~~ 147 (431)
T PRK13352 75 DIEEELEKAKVAVKYGADTIMDLST-GG--DLDEIRRAIIEA---SPVPVGTV-PIYQAAVEAARKYGSVVDMTEDDLFD 147 (431)
T ss_pred CHHHHHHHHHHHHHcCCCeEeeccC-CC--CHHHHHHHHHHc---CCCCCcCh-hHHHHHHHHHhcCCChhhCCHHHHHH
Confidence 455555568999999976 445553 22 233333333332 11212211 0000 00001223567888888
Q ss_pred HHHHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEecCCCCHHHHHHHhhcCCceEEeeecccccccc
Q 024050 113 CCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRDI 192 (273)
Q Consensus 113 ~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~~l~~~~~ 192 (273)
.+++..+ |-+|.+-+|.- -+.+.++.++++|++ .|+-+-.-..+...+... ..-|++...+
T Consensus 148 ~ie~qa~----~GVDfmTiHcG-------i~~~~~~~~~~~~R~--~giVSRGGs~~~~WM~~n------~~ENPlye~f 208 (431)
T PRK13352 148 VIEKQAK----DGVDFMTIHCG-------VTRETLERLKKSGRI--MGIVSRGGSFLAAWMLHN------NKENPLYEHF 208 (431)
T ss_pred HHHHHHH----hCCCEEEEccc-------hhHHHHHHHHhcCCc--cCeecCCHHHHHHHHHHc------CCcCchHHHH
Confidence 8887776 78999999974 367788899999865 566554444433332221 1224444433
Q ss_pred cccHHHHHHHhCCeEEe
Q 024050 193 EEEIIPLCRELGIGIVP 209 (273)
Q Consensus 193 ~~~l~~~~~~~gi~v~a 209 (273)
..+++.|+++++.+--
T Consensus 209 -D~lLeI~~~yDVtlSL 224 (431)
T PRK13352 209 -DYLLEILKEYDVTLSL 224 (431)
T ss_pred -HHHHHHHHHhCeeeec
Confidence 5677777777777643
No 101
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=59.46 E-value=1.1e+02 Score=27.29 Aligned_cols=103 Identities=21% Similarity=0.227 Sum_probs=56.7
Q ss_pred ccCCHHHHHHHHHHHHHHcCCCcccEEEec---------CCCCCCCHHHHHHHHHHHHHcCCccEEecCC---CCHHHHH
Q 024050 103 VKGAPDYVRSCCEASLKRLDVDYIDLYYQH---------RVDTSVPIEETIGEMKKLVEEGKIKYIGLSE---ASPGTIR 170 (273)
Q Consensus 103 ~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh---------~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~---~~~~~l~ 170 (273)
+.++.+.+.+ +-+.|.+.|+++|.+-..- .+. ..+..+.++.+.+.+ ...+...+.. .+.+.++
T Consensus 20 ~~f~~~~~~~-i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~-~~~~~e~i~~~~~~~--~~~~~~~ll~pg~~~~~dl~ 95 (337)
T PRK08195 20 HQYTLEQVRA-IARALDAAGVPVIEVTHGDGLGGSSFNYGFG-AHTDEEYIEAAAEVV--KQAKIAALLLPGIGTVDDLK 95 (337)
T ss_pred CccCHHHHHH-HHHHHHHcCCCEEEeecCCCCCCccccCCCC-CCCHHHHHHHHHHhC--CCCEEEEEeccCcccHHHHH
Confidence 3455665554 4555999999999995321 111 122334444443332 3344444332 3567777
Q ss_pred HHhhcCCceEEeeecccccccccccHHHHHHHhCCeEEec
Q 024050 171 RAHAVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPY 210 (273)
Q Consensus 171 ~~~~~~~~~~~q~~~~l~~~~~~~~l~~~~~~~gi~v~a~ 210 (273)
.+.+.. ++.+.+..+.-+.+.-.+.+++++++|+.+...
T Consensus 96 ~a~~~g-vd~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~ 134 (337)
T PRK08195 96 MAYDAG-VRVVRVATHCTEADVSEQHIGLARELGMDTVGF 134 (337)
T ss_pred HHHHcC-CCEEEEEEecchHHHHHHHHHHHHHCCCeEEEE
Confidence 776653 344444333322222377899999999887765
No 102
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=59.33 E-value=22 Score=33.44 Aligned_cols=126 Identities=21% Similarity=0.242 Sum_probs=71.3
Q ss_pred HHHHHHHHCCCCcc--ccccCCC--------CCcHHHHHHHHHhc---CCCCCEEEEeccCcCCCCCc---------ccc
Q 024050 45 SMIKHAFSKGITFF--DTADVYG--------QNANEVLLGKALKQ---LPREKIQVATKFGIAGIGVA---------GVI 102 (273)
Q Consensus 45 ~~l~~A~~~Gin~~--DtA~~Yg--------~g~se~~lg~~l~~---~~r~~~~i~tK~~~~~~~~~---------~~~ 102 (273)
+-++...+.|+..+ =||..|- +|.-|.++..+-+. ..+.++|+++-++...-..+ ...
T Consensus 106 e~f~~l~~~GltmYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~~g~~L~Gk~~lTaGLGGMgGAQplA~~m~g~v~l~ 185 (546)
T PF01175_consen 106 EHFERLEALGLTMYGQMTAGSWIYIGPQGIVQGTYETFLNAARKHFGGDLAGKLFLTAGLGGMGGAQPLAATMAGGVGLI 185 (546)
T ss_dssp HHHHHHHHTT---B-TTTTTTT---TTHHHHHHHHHHHHHHHHHHSTTS-TT-EEEEE--STTCCHHHHHHHHTT-EEEE
T ss_pred HHHHHHHhccchhhccccccceEEEcccceeehhhHHHHHHHHHhcCCCCcceEEEEecccccccchHHHHHhcCceEEE
Confidence 34455566787733 2444432 45555554443332 44778999998875431100 012
Q ss_pred ccCCHHHHHHHHHHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEecCCCCHHHHHHHhhc---CCce
Q 024050 103 VKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAV---HPIT 179 (273)
Q Consensus 103 ~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~---~~~~ 179 (273)
.+.++..|+ +|+.+.|+|.+. .++++.++..++.+++|+..+||+-..-++.++++.+. ..+.
T Consensus 186 vEvd~~ri~-------kR~~~g~ld~~~-------~~ldea~~~~~ea~~~~~~~SIg~~GN~ad~~~~l~~~~i~pDl~ 251 (546)
T PF01175_consen 186 VEVDPSRIE-------KRLEQGYLDEVT-------DDLDEALARAKEARAKKEPLSIGLLGNAADLWEELVERGIIPDLV 251 (546)
T ss_dssp EES-HHHHH-------HHHHTTSSSEEE-------SSHHHHHHHHHHHHHTT--EEEEEES-HHHHHHHHHHTT---SEE
T ss_pred EEECHHHHH-------HHHhCCCeeEEc-------CCHHHHHHHHHHhhccCCeeEEEEeccHHHHHHHHHHcCCCCCcc
Confidence 234455444 466678999876 66899999999999999999999999888889988876 3344
Q ss_pred EEeee
Q 024050 180 AVQME 184 (273)
Q Consensus 180 ~~q~~ 184 (273)
.-|..
T Consensus 252 tDQTS 256 (546)
T PF01175_consen 252 TDQTS 256 (546)
T ss_dssp ---SS
T ss_pred cCCCc
Confidence 44543
No 103
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=59.31 E-value=19 Score=27.61 Aligned_cols=25 Identities=32% Similarity=0.575 Sum_probs=21.3
Q ss_pred ccccccHHHHHHHhCCeEEecccCC
Q 024050 190 RDIEEEIIPLCRELGIGIVPYSPLG 214 (273)
Q Consensus 190 ~~~~~~l~~~~~~~gi~v~a~spl~ 214 (273)
++.-.++++.|++.||.|++|-.+.
T Consensus 43 ~Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 43 RDLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred cCHHHHHHHHHHHCCCEEEEEEeee
Confidence 3444889999999999999998876
No 104
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=58.56 E-value=50 Score=27.56 Aligned_cols=97 Identities=20% Similarity=0.190 Sum_probs=55.2
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEecCCCCHHHHHHHhh---cCCceEE
Q 024050 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHA---VHPITAV 181 (273)
Q Consensus 105 ~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~---~~~~~~~ 181 (273)
++.+. +..+-+.|.++|+++|++- .|.......+.++.+.+.... .+-.+++....+.++.+.+ ...++.+
T Consensus 11 ~~~~~-k~~i~~~L~~~Gv~~iEvg---~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~g~~~i 84 (237)
T PF00682_consen 11 FSTEE-KLEIAKALDEAGVDYIEVG---FPFASEDDFEQVRRLREALPN--ARLQALCRANEEDIERAVEAAKEAGIDII 84 (237)
T ss_dssp --HHH-HHHHHHHHHHHTTSEEEEE---HCTSSHHHHHHHHHHHHHHHS--SEEEEEEESCHHHHHHHHHHHHHTTSSEE
T ss_pred cCHHH-HHHHHHHHHHhCCCEEEEc---ccccCHHHHHHhhhhhhhhcc--cccceeeeehHHHHHHHHHhhHhccCCEE
Confidence 43444 4455556999999999998 222222234455556555555 4445566666666666444 2334444
Q ss_pred eeeccccc--c------------cccccHHHHHHHhCCeE
Q 024050 182 QMEWSLWT--R------------DIEEEIIPLCRELGIGI 207 (273)
Q Consensus 182 q~~~~l~~--~------------~~~~~l~~~~~~~gi~v 207 (273)
.+..+.-+ . +.-.+.+++++++|+.+
T Consensus 85 ~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v 124 (237)
T PF00682_consen 85 RIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEV 124 (237)
T ss_dssp EEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred EecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCce
Confidence 44333322 0 11167899999999999
No 105
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=58.50 E-value=1.4e+02 Score=26.75 Aligned_cols=116 Identities=18% Similarity=0.198 Sum_probs=72.4
Q ss_pred CCHHHHHHHHHHHHHCCCCccccccCCC----------------CC--cHHHHHHHHHhcCCCCCEEEEeccCcCCCCCc
Q 024050 38 VSEEDGISMIKHAFSKGITFFDTADVYG----------------QN--ANEVLLGKALKQLPREKIQVATKFGIAGIGVA 99 (273)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gin~~DtA~~Yg----------------~g--~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~ 99 (273)
++.+.-.++.++|-+.|+-+|-|-..+. .| ....++-...+ ..+.++++|-..
T Consensus 87 ~p~e~~~~Lke~a~~~Gi~~~SSPfd~~svd~l~~~~~~ayKIaS~E~~~~plik~iA~--~~kPiIlSTGma------- 157 (347)
T COG2089 87 TPLEWHAQLKEYARKRGIIFFSSPFDLTAVDLLESLNPPAYKIASGEINDLPLIKYIAK--KGKPIILSTGMA------- 157 (347)
T ss_pred CCHHHHHHHHHHHHHcCeEEEecCCCHHHHHHHHhcCCCeEEecCccccChHHHHHHHh--cCCCEEEEcccc-------
Confidence 5678888999999999998887665553 00 01122221111 233566666432
Q ss_pred cccccCCHHHHHHHHHHHHHHcCCCcccEEEecCCCCC-CCHHH-HHHHHHHHHHcCCccEEecCCCCHHHHHHH
Q 024050 100 GVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS-VPIEE-TIGEMKKLVEEGKIKYIGLSEASPGTIRRA 172 (273)
Q Consensus 100 ~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~-~~~~~-~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~ 172 (273)
+-+.|.++++...++=. .|+.++|+.+.. .+.++ -+.+|..|.+.= ---||+|.|+...+.-+
T Consensus 158 ------~~~ei~~av~~~r~~g~---~~i~LLhC~s~YPap~ed~NL~~i~~l~~~F-n~~vGlSDHT~g~~a~l 222 (347)
T COG2089 158 ------TIEEIEEAVAILRENGN---PDIALLHCTSAYPAPFEDVNLKAIPKLAEAF-NAIVGLSDHTLGILAPL 222 (347)
T ss_pred ------cHHHHHHHHHHHHhcCC---CCeEEEEecCCCCCCHHHhhHHHHHHHHHHh-CCccccccCccchhHHH
Confidence 35678888876666544 399999987653 44544 356666666655 34599999987654433
No 106
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=58.16 E-value=33 Score=32.12 Aligned_cols=66 Identities=18% Similarity=0.206 Sum_probs=43.4
Q ss_pred HHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEecC-CCCHHHHHHHhhcCCceEEeeeccc
Q 024050 118 LKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS-EASPGTIRRAHAVHPITAVQMEWSL 187 (273)
Q Consensus 118 L~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~q~~~~l 187 (273)
...+|.|++-+++...-....+.+ ....+.+... ++.+||- |-+++.+.++.+...++++|++-+.
T Consensus 273 a~~~GaD~lGfIf~~~SpR~V~~~-~a~~i~~~l~---v~~VgVfv~~~~~~i~~i~~~~~lD~vQLHG~e 339 (454)
T PRK09427 273 AYDAGAVYGGLIFVEKSPRYVSLE-QAQEIIAAAP---LRYVGVFRNADIEDIVDIAKQLSLAAVQLHGDE 339 (454)
T ss_pred HHhCCCCEEeeEeCCCCCCCCCHH-HHHHHHHhCC---CCEEEEEeCCCHHHHHHHHHHcCCCEEEeCCCC
Confidence 345888999887533221223333 3333333222 8889997 7888999999988899999997643
No 107
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=58.09 E-value=1.4e+02 Score=26.69 Aligned_cols=150 Identities=19% Similarity=0.137 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHCCCCccccccCCCCCcHHHHHHHHHhc-CCCCCEEEEeccCcCCCCCccccccCCHHHHHHHHHHHHH
Q 024050 41 EDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ-LPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLK 119 (273)
Q Consensus 41 ~~~~~~l~~A~~~Gin~~DtA~~Yg~g~se~~lg~~l~~-~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~ 119 (273)
++..+.+..+.+.|++.|=.-- ++....+.+ +.+++ .+ ++-|.-=... .++.+... .++
T Consensus 139 ~~~~~~~~~~~~~Gf~~~KiKv--~~~~d~~~l-~~vr~~~g--~~~l~lDaN~----------~~~~~~a~-----~~~ 198 (354)
T cd03317 139 EQLLKQIERYLEEGYKRIKLKI--KPGWDVEPL-KAVRERFP--DIPLMADANS----------AYTLADIP-----LLK 198 (354)
T ss_pred HHHHHHHHHHHHcCCcEEEEec--ChHHHHHHH-HHHHHHCC--CCeEEEECCC----------CCCHHHHH-----HHH
Confidence 6778888888999998763221 221233333 34444 33 4433332211 13344332 233
Q ss_pred HcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCc-cEEecCCCCHHHHHHHhhcCCceEEeeecccccccc-cccHH
Q 024050 120 RLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKI-KYIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRDI-EEEII 197 (273)
Q Consensus 120 ~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~i-r~iGvS~~~~~~l~~~~~~~~~~~~q~~~~l~~~~~-~~~l~ 197 (273)
+|. ..++.++..|-. .+-++.+.++++.-.+ -+.|=|.++.+.+..+++...++++|+..+..---. -..+.
T Consensus 199 ~l~--~~~i~~iEeP~~----~~d~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~~~ik~~~~GGit~~~~i~ 272 (354)
T cd03317 199 RLD--EYGLLMIEQPLA----ADDLIDHAELQKLLKTPICLDESIQSAEDARKAIELGACKIINIKPGRVGGLTEALKIH 272 (354)
T ss_pred Hhh--cCCccEEECCCC----hhHHHHHHHHHhhcCCCEEeCCccCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHH
Confidence 332 245666665533 2346667777765432 245556688889999988888888998776543211 16789
Q ss_pred HHHHHhCCeEEecccCCCc
Q 024050 198 PLCRELGIGIVPYSPLGRG 216 (273)
Q Consensus 198 ~~~~~~gi~v~a~spl~~G 216 (273)
..|+.+|+.++..+.+..|
T Consensus 273 ~~A~~~gi~~~~g~~~es~ 291 (354)
T cd03317 273 DLCQEHGIPVWCGGMLESG 291 (354)
T ss_pred HHHHHcCCcEEecCcccch
Confidence 9999999999876555433
No 108
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=57.55 E-value=1.1e+02 Score=27.83 Aligned_cols=90 Identities=12% Similarity=0.193 Sum_probs=58.9
Q ss_pred EEEecCCCCC-----------CCHHHHHHHHHHHHHc-CC---ccEEecC--CCCHHHHHHHhh---cC------CceEE
Q 024050 128 LYYQHRVDTS-----------VPIEETIGEMKKLVEE-GK---IKYIGLS--EASPGTIRRAHA---VH------PITAV 181 (273)
Q Consensus 128 l~~lh~~~~~-----------~~~~~~~~~L~~l~~~-G~---ir~iGvS--~~~~~~l~~~~~---~~------~~~~~ 181 (273)
.+.||.|+.. .+++++++++.+..++ |+ +-|+=+. |.++++.+++.+ -. +..++
T Consensus 231 AiSLHA~~~e~R~~lmPin~~ypl~eLl~a~~~y~~~t~rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~VN 310 (371)
T PRK14461 231 AISLHAPDDALRSELMPVNRRYPIADLMAATRDYIAKTRRRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHVN 310 (371)
T ss_pred EEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhhCCEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEEE
Confidence 3789999753 3578899999887643 33 2222222 455555555444 34 56888
Q ss_pred eeeccccccc----c----cccHHHHHHHhCCeEEecccCCCcc
Q 024050 182 QMEWSLWTRD----I----EEEIIPLCRELGIGIVPYSPLGRGF 217 (273)
Q Consensus 182 q~~~~l~~~~----~----~~~l~~~~~~~gi~v~a~spl~~G~ 217 (273)
-++||+.... + .....+.++++||.+..+...+.-+
T Consensus 311 LIp~Np~~~~~~~~ps~~~i~~F~~~L~~~gi~vtiR~s~G~DI 354 (371)
T PRK14461 311 LIPWNPVPGTPLGRSERERVTTFQRILTDYGIPCTVRVERGVEI 354 (371)
T ss_pred EecCCCCCCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCcCh
Confidence 9999986531 1 1556677788999999998887544
No 109
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=57.52 E-value=1.2e+02 Score=25.72 Aligned_cols=86 Identities=12% Similarity=0.049 Sum_probs=46.7
Q ss_pred HHcCCCcccEEEecCCCCCCC-HHHHHHHHHHHHHcCCccEEecCC-CCHHHHHHHhhcCCceEEeeeccccccccc-cc
Q 024050 119 KRLDVDYIDLYYQHRVDTSVP-IEETIGEMKKLVEEGKIKYIGLSE-ASPGTIRRAHAVHPITAVQMEWSLWTRDIE-EE 195 (273)
Q Consensus 119 ~~L~~d~iDl~~lh~~~~~~~-~~~~~~~L~~l~~~G~ir~iGvS~-~~~~~l~~~~~~~~~~~~q~~~~l~~~~~~-~~ 195 (273)
+.+| +|-+.+|..+.+.. -.--|+.+.++.+.-.+.-|.--. .+.+.+.++++....+.+.+---+.+.... .+
T Consensus 163 ~~~g---~~~ii~~~i~~~g~~~g~d~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~~~~~~~ 239 (253)
T PRK02083 163 EELG---AGEILLTSMDRDGTKNGYDLELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFGEITIGE 239 (253)
T ss_pred HHcC---CCEEEEcCCcCCCCCCCcCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcCCCCHHH
Confidence 4455 56667776543211 111356666666655556555443 356778777765444444442222222211 67
Q ss_pred HHHHHHHhCCeE
Q 024050 196 IIPLCRELGIGI 207 (273)
Q Consensus 196 l~~~~~~~gi~v 207 (273)
+.+.|++.||.+
T Consensus 240 ~~~~~~~~~~~~ 251 (253)
T PRK02083 240 LKAYLAEQGIPV 251 (253)
T ss_pred HHHHHHHCCCcc
Confidence 888998888764
No 110
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=57.49 E-value=1.3e+02 Score=26.05 Aligned_cols=26 Identities=12% Similarity=0.110 Sum_probs=21.8
Q ss_pred CCCHHHHHHHHHHHHHCCCCcccccc
Q 024050 37 PVSEEDGISMIKHAFSKGITFFDTAD 62 (273)
Q Consensus 37 ~~~~~~~~~~l~~A~~~Gin~~DtA~ 62 (273)
..+.++..++.....+.||..|+...
T Consensus 17 ~~~~~~~~~ia~~L~~~Gv~~iE~G~ 42 (275)
T cd07937 17 RMRTEDMLPIAEALDEAGFFSLEVWG 42 (275)
T ss_pred eccHHHHHHHHHHHHHcCCCEEEccC
Confidence 34788888898888899999999874
No 111
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=56.68 E-value=1.1e+02 Score=25.29 Aligned_cols=149 Identities=11% Similarity=-0.034 Sum_probs=78.2
Q ss_pred CHHHHHHHHHHHHHCCCCccccccCCCCCcHHHHHHHHHhcCCCCCEEEEeccCcCCCCCccccccCCHHHHHHHHHHHH
Q 024050 39 SEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASL 118 (273)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL 118 (273)
+.+++.++++.|++.|+...|+-...- -..-..+|+.. .+.++++.-=. .+.+-+++.+....
T Consensus 13 D~~~~~~~l~~al~~~~~~~~ii~~~l-~p~m~~vG~~w---~~gei~vaqe~-------------~as~~~~~~l~~l~ 75 (213)
T cd02069 13 IRDGIEEDTEEARQQYARPLEIINGPL-MDGMKVVGDLF---GAGKMFLPQVL-------------KSARVMKAAVAYLE 75 (213)
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHHH---ccCCCcHHHHH-------------HHHHHHHHHHHHHH
Confidence 789999999999999977655432110 01222233333 34455443221 12333444444442
Q ss_pred HHcCCC-----cccEEEecCCCCCCCHHHHHHHHHHHHHcCC-ccEEecCCCCHHHHHHHhhcCCceEEeeecccccccc
Q 024050 119 KRLDVD-----YIDLYYQHRVDTSVPIEETIGEMKKLVEEGK-IKYIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRDI 192 (273)
Q Consensus 119 ~~L~~d-----~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~-ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~~l~~~~~ 192 (273)
.++... ..--+++-.+..+...-...=.-.-|...|. |-++|... +++.+.+.....+++++.+...+-....
T Consensus 76 ~~l~~~~~~~~~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~v-p~e~~v~~~~~~~~~~V~lS~~~~~~~~ 154 (213)
T cd02069 76 PYMEKEKGENSSKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMV-PIEKILEAAKEHKADIIGLSGLLVPSLD 154 (213)
T ss_pred HHHhhccccCCCCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCC-CHHHHHHHHHHcCCCEEEEccchhccHH
Confidence 222211 1122334444433332222222234566776 77777544 5566666666667777777666544332
Q ss_pred c-ccHHHHHHHhCC
Q 024050 193 E-EEIIPLCRELGI 205 (273)
Q Consensus 193 ~-~~l~~~~~~~gi 205 (273)
. .++++.+++.+.
T Consensus 155 ~~~~~i~~L~~~~~ 168 (213)
T cd02069 155 EMVEVAEEMNRRGI 168 (213)
T ss_pred HHHHHHHHHHhcCC
Confidence 2 778888888765
No 112
>PRK05588 histidinol-phosphatase; Provisional
Probab=56.52 E-value=61 Score=27.52 Aligned_cols=105 Identities=17% Similarity=0.196 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHCCCCccccccCCCCC---------cHHHHHHHHHhcCCCCCEEEEeccCcCCCCCccccccCCHHHH
Q 024050 40 EEDGISMIKHAFSKGITFFDTADVYGQN---------ANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYV 110 (273)
Q Consensus 40 ~~~~~~~l~~A~~~Gin~~DtA~~Yg~g---------~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i 110 (273)
.....+.+++|.+.|+..+ .+++.... .-+..+ +.+++.+..+|.+.--++ +.+. -
T Consensus 15 ~~~~ee~v~~A~~~Gl~~~-~TdH~~~~~~~~~~~~~~~~~y~-~~i~~~~~~~I~~GiE~~------------~~~~-~ 79 (255)
T PRK05588 15 KMKIEEAIKKAKENNLGII-ITEHMDLNLPDKNKFCFDVDSYF-NKYSKYRNNKLLLGIELG------------MEKD-L 79 (255)
T ss_pred ccCHHHHHHHHHHcCCCEE-EeCCCCCCCCCccccccCHHHHH-HHHHHHhcCCcceEEEec------------ccCC-C
Confidence 4457899999999999988 77764211 011112 112212223444444332 2122 2
Q ss_pred HHHHHHHHHHcCCCcccEEEecCCCCCC----------CHH----HHHHHHHHHHH-cCCccEEe
Q 024050 111 RSCCEASLKRLDVDYIDLYYQHRVDTSV----------PIE----ETIGEMKKLVE-EGKIKYIG 160 (273)
Q Consensus 111 ~~~~~~sL~~L~~d~iDl~~lh~~~~~~----------~~~----~~~~~L~~l~~-~G~ir~iG 160 (273)
...+++.|++...||+ +..+|..+... +.+ ..++.+.++++ .|++.-||
T Consensus 80 ~~~~~~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~v~~~~~~dvlg 143 (255)
T PRK05588 80 IEENKELINKYEFDYV-IGSIHLVDKLDLYLDEFYKDKSKEEAYHIYFENMLKCLEKYDFIDSLG 143 (255)
T ss_pred HHHHHHHHhhCCCCeE-EEeEEeeCCCcchHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 4566778888887887 78889854211 222 34577777776 46554444
No 113
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=56.42 E-value=1.5e+02 Score=26.53 Aligned_cols=105 Identities=21% Similarity=0.218 Sum_probs=55.3
Q ss_pred ccCCHHHHHHHHHHHHHHcCCCcccEEE--------ecC-CCCCCCHHHHHHHHHHHHHcCCccEEecC-CCCHHHHHHH
Q 024050 103 VKGAPDYVRSCCEASLKRLDVDYIDLYY--------QHR-VDTSVPIEETIGEMKKLVEEGKIKYIGLS-EASPGTIRRA 172 (273)
Q Consensus 103 ~~~~~~~i~~~~~~sL~~L~~d~iDl~~--------lh~-~~~~~~~~~~~~~L~~l~~~G~ir~iGvS-~~~~~~l~~~ 172 (273)
+.++.+.+. .+-+.|.+.|+++|.+-. ++. +.. .+..+.++.+.+..+.-++..+-+. ..+.+.++.+
T Consensus 19 ~~f~~~~~~-~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~-~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a 96 (333)
T TIGR03217 19 HQFTIEQVR-AIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSA-HTDLEYIEAAADVVKRAKVAVLLLPGIGTVHDLKAA 96 (333)
T ss_pred CcCCHHHHH-HHHHHHHHcCCCEEEEecCCCCCCccccCCCCC-CChHHHHHHHHHhCCCCEEEEEeccCccCHHHHHHH
Confidence 345555554 455569999999999952 221 211 2223333444333333232222212 1356777777
Q ss_pred hhcCCceEEeeecccccccccccHHHHHHHhCCeEEec
Q 024050 173 HAVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPY 210 (273)
Q Consensus 173 ~~~~~~~~~q~~~~l~~~~~~~~l~~~~~~~gi~v~a~ 210 (273)
.+.. ++.+.+-.+.-+-+...+.+++++++|..+...
T Consensus 97 ~~~g-vd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~ 133 (333)
T TIGR03217 97 YDAG-ARTVRVATHCTEADVSEQHIGMARELGMDTVGF 133 (333)
T ss_pred HHCC-CCEEEEEeccchHHHHHHHHHHHHHcCCeEEEE
Confidence 7653 344444443322222267889999999877653
No 114
>PRK09061 D-glutamate deacylase; Validated
Probab=55.96 E-value=89 Score=29.69 Aligned_cols=113 Identities=9% Similarity=0.024 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHCCCCccccccCCCCCcHHHHHHHHHhcCCCCCEEEEeccCcCCCCCccccccCCHHHHHHHHHHHHHHc
Q 024050 42 DGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRL 121 (273)
Q Consensus 42 ~~~~~l~~A~~~Gin~~DtA~~Yg~g~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L 121 (273)
+..++++.|++.|+..|=+...|-++.+...+-+.++...+.+..|......... .++....+++++.++..
T Consensus 170 ~m~~ll~~al~~Ga~gis~~~~y~p~~~~~eL~~l~~~A~~~g~~v~~H~e~~~~--------~~~~~e~~av~~~i~lA 241 (509)
T PRK09061 170 EILELLEQGLDEGALGIGIGAGYAPGTGHKEYLELARLAARAGVPTYTHVRYLSN--------VDPRSSVDAYQELIAAA 241 (509)
T ss_pred HHHHHHHHHHHCCCCEEecCCccCCCCCHHHHHHHHHHHHHcCCEEEEEecCccc--------CCchhHHHHHHHHHHHH
Confidence 3678888999999998877555655555555666666544556677776543220 01122223334433322
Q ss_pred CCCcccEEEecCCCC-CCCHHHHHHHHHHHHHcCCccEEecC
Q 024050 122 DVDYIDLYYQHRVDT-SVPIEETIGEMKKLVEEGKIKYIGLS 162 (273)
Q Consensus 122 ~~d~iDl~~lh~~~~-~~~~~~~~~~L~~l~~~G~ir~iGvS 162 (273)
..--.-+...|--.. ..+..+.++.+++++++|.--..-++
T Consensus 242 ~~~G~rv~IsHlss~g~~~~~~~le~I~~Ar~~Gi~Vt~e~~ 283 (509)
T PRK09061 242 AETGAHMHICHVNSTSLRDIDRCLALVEKAQAQGLDVTTEAY 283 (509)
T ss_pred HHhCCCEEEEeeccCCcccHHHHHHHHHHHHHcCCcEEEEec
Confidence 211233566665432 23457788999999999854433443
No 115
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=55.20 E-value=1.4e+02 Score=25.73 Aligned_cols=100 Identities=14% Similarity=0.182 Sum_probs=61.8
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEecCCCCHHHHHHHhhc--CCceEEee
Q 024050 106 APDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAV--HPITAVQM 183 (273)
Q Consensus 106 ~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~--~~~~~~q~ 183 (273)
+.+.+.+..++.. .-|.|.||+-.= +......+.....++.+++.-.+ -|-+-+++++.++++++. ....+ +
T Consensus 23 d~~~i~~~A~~~~-~~GAdiIDVg~~--~~~~eE~~r~~~~v~~l~~~~~~-plsIDT~~~~v~eaaL~~~~G~~iI--N 96 (261)
T PRK07535 23 DAAFIQKLALKQA-EAGADYLDVNAG--TAVEEEPETMEWLVETVQEVVDV-PLCIDSPNPAAIEAGLKVAKGPPLI--N 96 (261)
T ss_pred CHHHHHHHHHHHH-HCCCCEEEECCC--CCchhHHHHHHHHHHHHHHhCCC-CEEEeCCCHHHHHHHHHhCCCCCEE--E
Confidence 3555555555543 568899998753 22222233445555555544222 378889999999999987 44433 3
Q ss_pred ecccccccccccHHHHHHHhCCeEEeccc
Q 024050 184 EWSLWTRDIEEEIIPLCRELGIGIVPYSP 212 (273)
Q Consensus 184 ~~~l~~~~~~~~l~~~~~~~gi~v~a~sp 212 (273)
..|...... ..+++.++++|..++...-
T Consensus 97 sIs~~~~~~-~~~~~l~~~~g~~vv~m~~ 124 (261)
T PRK07535 97 SVSAEGEKL-EVVLPLVKKYNAPVVALTM 124 (261)
T ss_pred eCCCCCccC-HHHHHHHHHhCCCEEEEec
Confidence 334432212 5689999999999998643
No 116
>PLN02540 methylenetetrahydrofolate reductase
Probab=53.88 E-value=2.2e+02 Score=27.63 Aligned_cols=152 Identities=11% Similarity=0.100 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHCCCCccccccCCCCCcHHHHHHHHHhcCCCC-CEEEEeccCcCCCCCccccccCCHHHHHHHHHHHH
Q 024050 40 EEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPRE-KIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASL 118 (273)
Q Consensus 40 ~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~se~~lg~~l~~~~r~-~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL 118 (273)
.+...+.++.-.+.|-.|+|.+..=|...++..+.-+.. ..++ .+-.+-.+.... .+...|...+++.
T Consensus 14 ~~nL~~~~~rl~~~~P~FisVT~gAgGst~~~Tl~la~~-lq~~~Gie~i~HLTCrd---------~n~~~L~~~L~~a- 82 (565)
T PLN02540 14 VDNLFERMDRMVAHGPLFCDITWGAGGSTADLTLDIANR-MQNMICVETMMHLTCTN---------MPVEKIDHALETI- 82 (565)
T ss_pred HHHHHHHHHHHhccCCCEEEeCCCCCCCcHHHHHHHHHH-HHHhcCCCeeEEeeecC---------CCHHHHHHHHHHH-
Confidence 344455666666789999998866554445544443332 1122 222223332222 3466666666665
Q ss_pred HHcCCCcccEEEecC-CCCC--------CCHHHHHHHHHHHHHc-CCccEEecCCCCH------------------HHHH
Q 024050 119 KRLDVDYIDLYYQHR-VDTS--------VPIEETIGEMKKLVEE-GKIKYIGLSEASP------------------GTIR 170 (273)
Q Consensus 119 ~~L~~d~iDl~~lh~-~~~~--------~~~~~~~~~L~~l~~~-G~ir~iGvS~~~~------------------~~l~ 170 (273)
..+|++.| +.|-. |... .......+-+..+++. |..-.|||+.+.. ..+.
T Consensus 83 ~~~GIrNI--LALrGDpp~~~d~~~~~~g~F~~A~dLV~~Ir~~~gd~f~IgVAGYPEgHpe~~~~~~~~~~~~~~~dl~ 160 (565)
T PLN02540 83 KSNGIQNI--LALRGDPPHGQDKFVQVEGGFACALDLVKHIRSKYGDYFGITVAGYPEAHPDVIGGDGLATPEAYQKDLA 160 (565)
T ss_pred HHCCCCEE--EEECCCCCCCCCCcCCCCCCcccHHHHHHHHHHhCCCCceEEEeCCCCCCCcccccccccCCCChHHHHH
Confidence 67776433 33332 2111 1122344555555554 4456788886531 1344
Q ss_pred HHhhc----CCceEEeeecccccccccccHHHHHHHhCCeE
Q 024050 171 RAHAV----HPITAVQMEWSLWTRDIEEEIIPLCRELGIGI 207 (273)
Q Consensus 171 ~~~~~----~~~~~~q~~~~l~~~~~~~~l~~~~~~~gi~v 207 (273)
.+.+. ..+.+-|+-|..-. -...++.|++.||.+
T Consensus 161 ~Lk~KvdAGAdFiITQlfFD~d~---f~~f~~~~r~~Gi~v 198 (565)
T PLN02540 161 YLKEKVDAGADLIITQLFYDTDI---FLKFVNDCRQIGITC 198 (565)
T ss_pred HHHHHHHcCCCEEeeccccCHHH---HHHHHHHHHhcCCCC
Confidence 43333 45777777666522 156889999998543
No 117
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=53.86 E-value=1.8e+02 Score=26.69 Aligned_cols=86 Identities=13% Similarity=0.084 Sum_probs=55.3
Q ss_pred cEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEecCCCCHHHHHHHhhc-CCceEEeeeccccccccc-ccHHHHHHHhC
Q 024050 127 DLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAV-HPITAVQMEWSLWTRDIE-EEIIPLCRELG 204 (273)
Q Consensus 127 Dl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~-~~~~~~q~~~~l~~~~~~-~~l~~~~~~~g 204 (273)
|-+.+..|. ...++..+..+.+.+.++.+-+...+.+.++++++. .++.++..+-|+.-+..+ .++.+.|+++|
T Consensus 100 D~Vvv~~p~----Y~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~~tklV~l~~P~NPtG~v~dl~~I~~la~~~g 175 (405)
T PRK08776 100 DTLVVPHDA----YGGSWRLFNALAKKGHFALITADLTDPRSLADALAQSPKLVLIETPSNPLLRITDLRFVIEAAHKVG 175 (405)
T ss_pred CEEEEccCC----chHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCccCCHHHHHHHHHHcC
Confidence 555554443 244555555555555566666666677888877643 456666667776554322 77999999999
Q ss_pred CeEEecccCCCc
Q 024050 205 IGIVPYSPLGRG 216 (273)
Q Consensus 205 i~v~a~spl~~G 216 (273)
+-++.=..++.+
T Consensus 176 i~vIvD~a~a~~ 187 (405)
T PRK08776 176 ALTVVDNTFLSP 187 (405)
T ss_pred CEEEEECCCccc
Confidence 999866665544
No 118
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=53.34 E-value=1.4e+02 Score=25.15 Aligned_cols=164 Identities=15% Similarity=0.179 Sum_probs=105.9
Q ss_pred CCHHHHHHHHHHHHHCCCCccccccCCCCCcHHHHHHHHHhcCCCCCEEEEeccCcCCCCCccccccCCHHHHHHHHHHH
Q 024050 38 VSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEAS 117 (273)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~s 117 (273)
.+..+....+...+..++.+.......|- +.+.+ +.+. ....+-.+.|++.-.. ....+.+.++..+.+.
T Consensus 10 sPR~Dv~p~l~~~l~~~v~i~e~G~LDgl--s~~eI-~~~a-P~~ge~vLvTrL~DG~------~V~ls~~~v~~~lq~~ 79 (221)
T PF07302_consen 10 SPRTDVTPELTEILGEGVEIVEAGALDGL--SREEI-AALA-PEPGEYVLVTRLRDGT------QVVLSKKKVEPRLQAC 79 (221)
T ss_pred CCCchhHHHHHHHcCCCceEEEeccCCCC--CHHHH-HHhC-CCCCCceeEEEeCCCC------EEEEEHHHHHHHHHHH
Confidence 36788999999999888887776666664 44434 6666 4556677888875432 4457899999999999
Q ss_pred HHHcCCCcccEEEecCCCC------CCC---HHHHHHHHHHHHHcCCccEEecCCCCHHHHHHHhhcC---CceEEeeec
Q 024050 118 LKRLDVDYIDLYYQHRVDT------SVP---IEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVH---PITAVQMEW 185 (273)
Q Consensus 118 L~~L~~d~iDl~~lh~~~~------~~~---~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~---~~~~~q~~~ 185 (273)
+++|.-+-.|++++-+-.. ..+ ...++..+-+..-.| +.+||=.=.++++....+.+ ...+.-...
T Consensus 80 i~~le~~G~d~illlCTG~F~~l~~~~~lleP~ril~~lV~al~~~--~~vGVivP~~eQ~~~~~~kW~~l~~~~~~a~a 157 (221)
T PF07302_consen 80 IAQLEAQGYDVILLLCTGEFPGLTARNPLLEPDRILPPLVAALVGG--HQVGVIVPLPEQIAQQAEKWQPLGNPVVVAAA 157 (221)
T ss_pred HHHHHHCCCCEEEEeccCCCCCCCCCcceeehHHhHHHHHHHhcCC--CeEEEEecCHHHHHHHHHHHHhcCCCeEEEEe
Confidence 9999877788877754322 111 234555555555555 67999887788877554442 123333445
Q ss_pred ccccccccccHHHHHH---HhCCeEEecccCC
Q 024050 186 SLWTRDIEEEIIPLCR---ELGIGIVPYSPLG 214 (273)
Q Consensus 186 ~l~~~~~~~~l~~~~~---~~gi~v~a~spl~ 214 (273)
|++..+. .++.+.++ ++|..++..--++
T Consensus 158 sPy~~~~-~~l~~Aa~~L~~~gadlIvLDCmG 188 (221)
T PF07302_consen 158 SPYEGDE-EELAAAARELAEQGADLIVLDCMG 188 (221)
T ss_pred CCCCCCH-HHHHHHHHHHHhcCCCEEEEECCC
Confidence 5553332 44444444 5688888877666
No 119
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=53.01 E-value=77 Score=26.35 Aligned_cols=72 Identities=15% Similarity=0.199 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHHHHCCCCccccccCCC-CCcHH---HHHHHHHhcCCCCCEEEEeccCcCCCCCccccccCCHHHHHHHH
Q 024050 39 SEEDGISMIKHAFSKGITFFDTADVYG-QNANE---VLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCC 114 (273)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg-~g~se---~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~ 114 (273)
++++...+.+.|.++|..|+=|+..|+ .|.+. +.+.+.++ +. +-.|..... -+.+...+-+
T Consensus 130 ~~~ei~~a~~ia~eaGADfvKTsTGf~~~gat~~dv~~m~~~v~----~~--v~IKaaGGi---------rt~~~a~~~i 194 (211)
T TIGR00126 130 TDEEIRKACEICIDAGADFVKTSTGFGAGGATVEDVRLMRNTVG----DT--IGVKASGGV---------RTAEDAIAMI 194 (211)
T ss_pred CHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHHhc----cC--CeEEEeCCC---------CCHHHHHHHH
Confidence 668888999999999999999998886 34333 33444443 12 233322111 1577888888
Q ss_pred HHHHHHcCCCc
Q 024050 115 EASLKRLDVDY 125 (273)
Q Consensus 115 ~~sL~~L~~d~ 125 (273)
+.--.|+|++.
T Consensus 195 ~aGa~riGts~ 205 (211)
T TIGR00126 195 EAGASRIGASA 205 (211)
T ss_pred HHhhHHhCcch
Confidence 88889999864
No 120
>PRK06740 histidinol-phosphatase; Validated
Probab=51.91 E-value=1.8e+02 Score=26.02 Aligned_cols=49 Identities=12% Similarity=0.099 Sum_probs=32.8
Q ss_pred HHHHHHHHHcCCCcccEEEecCCCC-----CC--------C----HHHHHHHHHHHHHcCCccEEec
Q 024050 112 SCCEASLKRLDVDYIDLYYQHRVDT-----SV--------P----IEETIGEMKKLVEEGKIKYIGL 161 (273)
Q Consensus 112 ~~~~~sL~~L~~d~iDl~~lh~~~~-----~~--------~----~~~~~~~L~~l~~~G~ir~iGv 161 (273)
..+++.|+....||+ +..+|..+. .. . ....++.+.++.+.|.+..||=
T Consensus 156 ~~~~~~l~~~~~Dyv-IgSVH~i~g~~~~~~~~~~~~~~~~~~~~~~~Yf~~~~~~i~~~~fdvIgH 221 (331)
T PRK06740 156 QELQSLLALGDFDYV-IGSVHFLNGWGFDNPDTKEYFEEHDLYALYDTFFKTVECAIRSELFDIIAH 221 (331)
T ss_pred HHHHHHHhcCCCCEE-EEeeeEeCCcCCCCccHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCCEeeC
Confidence 456667777777888 788897542 11 0 1235678888889998877764
No 121
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=51.85 E-value=73 Score=29.74 Aligned_cols=60 Identities=18% Similarity=0.225 Sum_probs=37.4
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEec-CCCC----------CC-CHH---HHH-HHHHHHHHcCCccEEecCCCCH
Q 024050 105 GAPDYVRSCCEASLKRLDVDYIDLYYQH-RVDT----------SV-PIE---ETI-GEMKKLVEEGKIKYIGLSEASP 166 (273)
Q Consensus 105 ~~~~~i~~~~~~sL~~L~~d~iDl~~lh-~~~~----------~~-~~~---~~~-~~L~~l~~~G~ir~iGvS~~~~ 166 (273)
.+.+.+++.++..++ ++.+++.+|.+- .|.. .. +.+ +.+ .+.+.|.+.|..+ +++|+|.-
T Consensus 215 qt~e~~~~~l~~~~~-l~~~~i~~y~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~-ye~s~far 290 (453)
T PRK09249 215 QTPESFARTLEKVLE-LRPDRLAVFNYAHVPWLFKAQRKIDEADLPSPEEKLAILQQTIETLTEAGYQY-IGMDHFAL 290 (453)
T ss_pred CCHHHHHHHHHHHHh-cCCCEEEEccCccchhhhhHhcCCCcccCCCHHHHHHHHHHHHHHHHHCCCEE-EeccceeC
Confidence 467888888777764 889999998764 1110 01 111 122 4455667778754 88888864
No 122
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=51.43 E-value=1.3e+02 Score=25.99 Aligned_cols=78 Identities=15% Similarity=0.088 Sum_probs=51.4
Q ss_pred CHH-HHHHHHHHHHHCCCCccccccCCCC-CcHH---HHHHHHHhcC-CCCCEEEEeccCcCCCCCccccccCCHHHHHH
Q 024050 39 SEE-DGISMIKHAFSKGITFFDTADVYGQ-NANE---VLLGKALKQL-PREKIQVATKFGIAGIGVAGVIVKGAPDYVRS 112 (273)
Q Consensus 39 ~~~-~~~~~l~~A~~~Gin~~DtA~~Yg~-g~se---~~lg~~l~~~-~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~ 112 (273)
+++ +...+.+.|.++|..|+=|+..|++ |.+. +++-+.+++. ...+ +.-|..... -+.+...+
T Consensus 144 ~~ee~i~~a~~~a~~aGADFVKTSTGf~~~gAt~edv~lm~~~i~~~~~~~~--vgIKAsGGI---------rt~~~A~~ 212 (257)
T PRK05283 144 KDEALIRKASEIAIKAGADFIKTSTGKVPVNATLEAARIMLEVIRDMGVAKT--VGFKPAGGV---------RTAEDAAQ 212 (257)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHHHhcccCCC--eeEEccCCC---------CCHHHHHH
Confidence 445 5889999999999999999999974 4333 3344444321 0122 333432211 24788888
Q ss_pred HHHHHHHHcCCCccc
Q 024050 113 CCEASLKRLDVDYID 127 (273)
Q Consensus 113 ~~~~sL~~L~~d~iD 127 (273)
-++.--+.||.++++
T Consensus 213 ~i~ag~~~lg~~~~~ 227 (257)
T PRK05283 213 YLALADEILGADWAD 227 (257)
T ss_pred HHHHHHHHhChhhcC
Confidence 889999999987776
No 123
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=51.41 E-value=1.6e+02 Score=25.33 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=22.3
Q ss_pred CCHHHHHHHHHHHHHCCCCcccccc
Q 024050 38 VSEEDGISMIKHAFSKGITFFDTAD 62 (273)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gin~~DtA~ 62 (273)
.+.++..++++.-.+.||..|+...
T Consensus 19 ~s~~~k~~i~~~L~~~Gv~~IEvG~ 43 (262)
T cd07948 19 FDTEDKIEIAKALDAFGVDYIELTS 43 (262)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEC
Confidence 4789999999999999999999864
No 124
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=51.38 E-value=1.2e+02 Score=26.67 Aligned_cols=73 Identities=12% Similarity=0.011 Sum_probs=49.8
Q ss_pred HHHHHHHHcCCcc-EEecCCCCHHHHHHHhhcCCceEEeeecccccccc-cccHHHHHHHhCCeEEecccCCCcc
Q 024050 145 GEMKKLVEEGKIK-YIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRDI-EEEIIPLCRELGIGIVPYSPLGRGF 217 (273)
Q Consensus 145 ~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~~l~~~~~-~~~l~~~~~~~gi~v~a~spl~~G~ 217 (273)
+.+.++.++-.+. ..|=|-++...+..+++....+++|+.....---. -..+.+.|+.+|+.++..+.+..|+
T Consensus 196 ~~~~~l~~~~~~Pia~dEs~~~~~d~~~~~~~~~~d~i~ik~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~es~i 270 (307)
T TIGR01927 196 DEMSAFSEATGTAIALDESLWELPQLADEYGPGWRGALVIKPAIIGSPAKLRDLAQKAHRLGLQAVFSSVFESSI 270 (307)
T ss_pred HHHHHHHHhCCCCEEeCCCcCChHHHHHHHhcCCCceEEECchhcCCHHHHHHHHHHHHHcCCCEEEECccchHH
Confidence 4555665553322 33445577778888887777788888777644211 1778999999999999887776654
No 125
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=51.13 E-value=1.6e+02 Score=25.31 Aligned_cols=177 Identities=15% Similarity=0.140 Sum_probs=87.7
Q ss_pred CCCHHHHHHHHHHHHHCCCCccccccCCCCCc---------HHHHHHHHHhcC-CCCCEEEEeccCcCCCC------Cc-
Q 024050 37 PVSEEDGISMIKHAFSKGITFFDTADVYGQNA---------NEVLLGKALKQL-PREKIQVATKFGIAGIG------VA- 99 (273)
Q Consensus 37 ~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~---------se~~lg~~l~~~-~r~~~~i~tK~~~~~~~------~~- 99 (273)
..+.++..++.+..-+.||..|+....-+.+. .++.+-+..+.. ++.++............ ..
T Consensus 16 ~f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g 95 (266)
T cd07944 16 DFGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYGNDDIDLLEPASGSV 95 (266)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCCCCCHHHHHHHhcCC
Confidence 34789999999999999999999874332211 145555555432 24444444433211000 00
Q ss_pred -c----ccccCCHHHHHHHHHHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEecCC----CCHHHHH
Q 024050 100 -G----VIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE----ASPGTIR 170 (273)
Q Consensus 100 -~----~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~----~~~~~l~ 170 (273)
+ ..+....+.+.+.++.. +..|. .+-+...+... .+.+...+.++++.+.| +..|.++. .+|+++.
T Consensus 96 v~~iri~~~~~~~~~~~~~i~~a-k~~G~-~v~~~~~~a~~--~~~~~~~~~~~~~~~~g-~~~i~l~DT~G~~~P~~v~ 170 (266)
T cd07944 96 VDMIRVAFHKHEFDEALPLIKAI-KEKGY-EVFFNLMAISG--YSDEELLELLELVNEIK-PDVFYIVDSFGSMYPEDIK 170 (266)
T ss_pred cCEEEEecccccHHHHHHHHHHH-HHCCC-eEEEEEEeecC--CCHHHHHHHHHHHHhCC-CCEEEEecCCCCCCHHHHH
Confidence 0 00112233344444433 23353 23333333322 44566677777777766 55677765 4566655
Q ss_pred HHhhc----CCceEEeeeccccccc--ccccHHHHHHHhCCeEEecccCCCccCCC
Q 024050 171 RAHAV----HPITAVQMEWSLWTRD--IEEEIIPLCRELGIGIVPYSPLGRGFFGG 220 (273)
Q Consensus 171 ~~~~~----~~~~~~q~~~~l~~~~--~~~~l~~~~~~~gi~v~a~spl~~G~L~~ 220 (273)
++.+. .+. -+.+.+|.-+.. .....+. +-+.|+.++--+..+-|--+|
T Consensus 171 ~lv~~l~~~~~~-~~~i~~H~Hn~~Gla~AN~la-A~~aGa~~vd~s~~G~G~~aG 224 (266)
T cd07944 171 RIISLLRSNLDK-DIKLGFHAHNNLQLALANTLE-AIELGVEIIDATVYGMGRGAG 224 (266)
T ss_pred HHHHHHHHhcCC-CceEEEEeCCCccHHHHHHHH-HHHcCCCEEEEecccCCCCcC
Confidence 55443 221 123344433321 1122222 336788887766666555444
No 126
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=50.93 E-value=2.1e+02 Score=26.51 Aligned_cols=152 Identities=11% Similarity=0.059 Sum_probs=84.8
Q ss_pred CHHHHHHHHHHHHHCCCCccccccCCCCCcHHHHHHHHHhcCCCCCEEEEeccCcCCCCCccccccCCHHHHHHHHHHHH
Q 024050 39 SEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASL 118 (273)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL 118 (273)
+.++..+..+.+++.|++.|=.--.-......+.+ +++++.-.+++.|..=... .++++...+ .+
T Consensus 196 ~~~~~~~~a~~~~~~Gf~~~KiKvg~~~~~d~~~v-~avRe~vG~~~~L~vDaN~----------~w~~~~A~~----~~ 260 (415)
T cd03324 196 SDEKLRRLCKEALAQGFTHFKLKVGADLEDDIRRC-RLAREVIGPDNKLMIDANQ----------RWDVPEAIE----WV 260 (415)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHH-HHHHHhcCCCCeEEEECCC----------CCCHHHHHH----HH
Confidence 45667777777888899876432111110112222 3444422223333332211 134443332 23
Q ss_pred HHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcC----CccEEecCCCCHHHHHHHhhcCCceEEeeecccccccc-c
Q 024050 119 KRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEG----KIKYIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRDI-E 193 (273)
Q Consensus 119 ~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G----~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~~l~~~~~-~ 193 (273)
++|. ..++.++..|-.. +-++.+.+|++.. .=-..|=|.++...+.++++...++++|+..+-.---. -
T Consensus 261 ~~L~--~~~l~~iEEP~~~----~d~~~~~~L~~~~~~~~iPIa~gEs~~~~~~~~~ll~~~a~dil~~d~~~~GGit~~ 334 (415)
T cd03324 261 KQLA--EFKPWWIEEPTSP----DDILGHAAIRKALAPLPIGVATGEHCQNRVVFKQLLQAGAIDVVQIDSCRLGGVNEN 334 (415)
T ss_pred HHhh--ccCCCEEECCCCC----CcHHHHHHHHHhcccCCCceecCCccCCHHHHHHHHHcCCCCEEEeCccccCCHHHH
Confidence 3332 2455666666433 2456666676654 22233445578888999988888899998777644211 1
Q ss_pred ccHHHHHHHhCCeEEecc
Q 024050 194 EEIIPLCRELGIGIVPYS 211 (273)
Q Consensus 194 ~~l~~~~~~~gi~v~a~s 211 (273)
..+...|+.+|+.+..++
T Consensus 335 ~kia~lA~a~gi~~~pH~ 352 (415)
T cd03324 335 LAVLLMAAKFGVPVCPHA 352 (415)
T ss_pred HHHHHHHHHcCCeEEEcC
Confidence 678999999999998764
No 127
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=50.53 E-value=1.7e+02 Score=25.44 Aligned_cols=159 Identities=11% Similarity=0.146 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHCCCCccccccCCCCCcHHHHH--HHHHhcCCCCCEEEEeccCcCCCCCccccccCCHHHHHHHHHHH
Q 024050 40 EEDGISMIKHAFSKGITFFDTADVYGQNANEVLL--GKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEAS 117 (273)
Q Consensus 40 ~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~se~~l--g~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~s 117 (273)
.+...+.++.-.+.+..|+..+..=|.+..+..+ ...|++ +-.+-....+.... .+...++..+...
T Consensus 15 ~~~~~~~~~~l~~~~p~fvsvT~~~~~~~~~~t~~~~~~l~~--~~g~~~i~Hltcr~---------~~~~~l~~~L~~~ 83 (281)
T TIGR00677 15 VQNLYERMDRMVASGPLFIDITWGAGGTTAELTLTIASRAQN--VVGVETCMHLTCTN---------MPIEMIDDALERA 83 (281)
T ss_pred HHHHHHHHHHHhhCCCCEEEeccCCCCcchhhHHHHHHHHHH--hcCCCeeEEeccCC---------CCHHHHHHHHHHH
Confidence 3445666666677888899888644322333333 333331 11222222222222 3355555555444
Q ss_pred HHHcCCCcccEEEecC-CC--------CCCCHHHHHHHHHHHHHc-CCccEEecCCCC--------HH-HHHHHhhc---
Q 024050 118 LKRLDVDYIDLYYQHR-VD--------TSVPIEETIGEMKKLVEE-GKIKYIGLSEAS--------PG-TIRRAHAV--- 175 (273)
Q Consensus 118 L~~L~~d~iDl~~lh~-~~--------~~~~~~~~~~~L~~l~~~-G~ir~iGvS~~~--------~~-~l~~~~~~--- 175 (273)
..+|++. ++.|-. +. ....+....+.++.+++. |.--.||+..++ .+ .+..+.+.
T Consensus 84 -~~~Gi~n--iLal~GD~p~~~~~~~~~~~~f~~a~~Li~~i~~~~~~~f~igva~~Pe~Hp~~~~~~~d~~~L~~Ki~a 160 (281)
T TIGR00677 84 -YSNGIQN--ILALRGDPPHIGDDWTEVEGGFQYAVDLVKYIRSKYGDYFCIGVAGYPEGHPEAESVELDLKYLKEKVDA 160 (281)
T ss_pred -HHCCCCE--EEEECCCCCCCCCCCCCCCCCCcCHHHHHHHHHHhCCCceEEEEEECCCCCCCCCCHHHHHHHHHHHHHc
Confidence 6666543 233322 11 111223355555555554 443579998763 11 23343333
Q ss_pred -CCceEEeeecccccccccccHHHHHHHhCCeEEecccCCCccCC
Q 024050 176 -HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFG 219 (273)
Q Consensus 176 -~~~~~~q~~~~l~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~ 219 (273)
..+.+-|.-|+.-. -..+++.|++.|+.+ |+--|++.
T Consensus 161 GA~f~iTQ~~Fd~~~---~~~f~~~~~~~gi~~----PIi~GI~p 198 (281)
T TIGR00677 161 GADFIITQLFYDVDN---FLKFVNDCRAIGIDC----PIVPGIMP 198 (281)
T ss_pred CCCEeeccceecHHH---HHHHHHHHHHcCCCC----CEEeeccc
Confidence 45667777665522 257888999997765 55555543
No 128
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=50.48 E-value=2e+02 Score=26.31 Aligned_cols=105 Identities=19% Similarity=0.227 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHH-----------HHcCCCcccEEEecCCCCC-----CCHHHHHHHHHHHHHc-CCccEEecC---CCCH
Q 024050 107 PDYVRSCCEASL-----------KRLDVDYIDLYYQHRVDTS-----VPIEETIGEMKKLVEE-GKIKYIGLS---EASP 166 (273)
Q Consensus 107 ~~~i~~~~~~sL-----------~~L~~d~iDl~~lh~~~~~-----~~~~~~~~~L~~l~~~-G~ir~iGvS---~~~~ 166 (273)
++.+++.++... +.++ +|++.||.-+.+ .+.++..+..++..+. +.=--|+=| ..++
T Consensus 127 ~~~i~~~~~dV~~dP~~wak~~V~~~~---aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~av~vPLIL~gsg~~~kD~ 203 (389)
T TIGR00381 127 PKPIRMHFEDVMEDPAEWARKCVKEFG---ADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQAVDVPIVIGGSGNPEKDP 203 (389)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhC---CCEEEEEecCCCccccccCHHHHHHHHHHHHHhCCCCEEEeCCCCCcCCH
Confidence 355666666655 5555 688888876543 3345666666666443 322223323 4688
Q ss_pred HHHHHHhhcC---CceEEeeecccccccccccHHHHHHHhCCeEEecccCCCccC
Q 024050 167 GTIRRAHAVH---PITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFF 218 (273)
Q Consensus 167 ~~l~~~~~~~---~~~~~q~~~~l~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L 218 (273)
+.++++++.. ++.++- -|+-+ +. ..+.+.|+++|..|++++|..-|.+
T Consensus 204 eVLeaaLe~~~G~kpLL~S--At~e~-Ny-~~ia~lAk~yg~~Vvv~s~~Din~a 254 (389)
T TIGR00381 204 LVLEKAAEVAEGERCLLAS--ANLDL-DY-EKIANAAKKYGHVVLSWTIMDINMQ 254 (389)
T ss_pred HHHHHHHHHhCCCCcEEEe--cCchh-hH-HHHHHHHHHhCCeEEEEcCCcHHHH
Confidence 9999988763 332222 22221 22 6799999999999999998876543
No 129
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=50.02 E-value=69 Score=27.51 Aligned_cols=65 Identities=20% Similarity=0.216 Sum_probs=47.5
Q ss_pred CCHHHHHHHHHHHHHHcCC--------------------------CcccEEEecCCCCCCCH---HHHHHHHHHHHHcCC
Q 024050 105 GAPDYVRSCCEASLKRLDV--------------------------DYIDLYYQHRVDTSVPI---EETIGEMKKLVEEGK 155 (273)
Q Consensus 105 ~~~~~i~~~~~~sL~~L~~--------------------------d~iDl~~lh~~~~~~~~---~~~~~~L~~l~~~G~ 155 (273)
.+++. ++.++++|+++|. ...|+++|.-|....+. .++++.|.+|+++|+
T Consensus 112 ~~~~d-~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~ 190 (254)
T COG1121 112 LNKKD-KEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGK 190 (254)
T ss_pred ccHHH-HHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCC
Confidence 34444 6888888888875 45688888888766553 578899999999987
Q ss_pred ccEEecCCCCHHHHHHH
Q 024050 156 IKYIGLSEASPGTIRRA 172 (273)
Q Consensus 156 ir~iGvS~~~~~~l~~~ 172 (273)
.|=+.+++...+.+.
T Consensus 191 --tIl~vtHDL~~v~~~ 205 (254)
T COG1121 191 --TVLMVTHDLGLVMAY 205 (254)
T ss_pred --EEEEEeCCcHHhHhh
Confidence 466777776655543
No 130
>PF03851 UvdE: UV-endonuclease UvdE; InterPro: IPR004601 Schizosaccharomyces pombe ultraviolet damage endonuclease (UVDE or Uve1p) performs the initial step in an alternative excision repair pathway for UV-induced DNA damage. This DNA repair pathway was originally thought to be specific for UV damage, however Uve1p also recognises UV-induced bipyrimidine photoadducts and other non-UV-induced DNA adducts []. The Deinococcus radiodurans UVSE protein has also shown to be a UV DNA damage endonuclease that catalyzes repair of UV-induced DNA damage by a similar mechanism [].; GO: 0004519 endonuclease activity, 0006289 nucleotide-excision repair, 0009411 response to UV; PDB: 3BZG_A 3BZJ_A 3C0L_A 3C0S_A 3C0Q_A.
Probab=49.88 E-value=1.7e+02 Score=25.39 Aligned_cols=100 Identities=14% Similarity=0.151 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHCCCCccccccC----CCC---C-cHH-------HHHHHHHhcCCCCCEEEEeccCcCCCCCcccccc
Q 024050 40 EEDGISMIKHAFSKGITFFDTADV----YGQ---N-ANE-------VLLGKALKQLPREKIQVATKFGIAGIGVAGVIVK 104 (273)
Q Consensus 40 ~~~~~~~l~~A~~~Gin~~DtA~~----Yg~---g-~se-------~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~ 104 (273)
-+...++|+.-.++||.+|=.+.. +.+ + .-+ +.+|+.++ ...+-++..-+.... .-.
T Consensus 44 l~~l~~~L~~n~~~~I~~yRisS~liP~ashp~~~~~~~~~~~~~l~~iG~~~~---~~~iRls~HP~qf~v-----LnS 115 (275)
T PF03851_consen 44 LEDLLRILEYNIAHGIRFYRISSDLIPLASHPEVGWDWEEEFAEELAEIGDLAK---ENGIRLSMHPDQFTV-----LNS 115 (275)
T ss_dssp HHHHHHHHHHHHHTT--EEE--TTSSTTTTSTT--S-HHHHHHHHHHHHHHHHH---HTT-EEEE---TT-------TT-
T ss_pred HHHHHHHHHHHHHcCCCEEecCcccCCCCCCcccccchHHHHHHHHHHHHHHHH---HcCCeEEecCCccee-----CCC
Confidence 355678888899999998876651 111 1 112 34555554 456667766443221 112
Q ss_pred CCHHHHHHHHHH------HHHHcCCCcc--cEEEecCCCCCCCHHHHHHHH
Q 024050 105 GAPDYVRSCCEA------SLKRLDVDYI--DLYYQHRVDTSVPIEETIGEM 147 (273)
Q Consensus 105 ~~~~~i~~~~~~------sL~~L~~d~i--Dl~~lh~~~~~~~~~~~~~~L 147 (273)
..++-++++++. .|+.||++.- ..+.||--....+.++.++.+
T Consensus 116 p~~~Vv~~si~~L~yH~~~Ld~mg~~~~~~~~i~IH~GG~YgdK~~al~RF 166 (275)
T PF03851_consen 116 PREEVVENSIRDLEYHARLLDLMGLDDSPDHKINIHVGGVYGDKEAALERF 166 (275)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHTT-TT----EEEEE----SS-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCcccccEEEEeeCCCCCChHHHHHHH
Confidence 346666666654 5888998877 889999765545444444333
No 131
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=49.38 E-value=1.9e+02 Score=25.64 Aligned_cols=109 Identities=16% Similarity=0.082 Sum_probs=60.2
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEecCCCCCC-CHHHHHHHHHHHHHcCCccEEecCC---------CCHHHHHHHhhc
Q 024050 106 APDYVRSCCEASLKRLDVDYIDLYYQHRVDTSV-PIEETIGEMKKLVEEGKIKYIGLSE---------ASPGTIRRAHAV 175 (273)
Q Consensus 106 ~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~-~~~~~~~~L~~l~~~G~ir~iGvS~---------~~~~~l~~~~~~ 175 (273)
+.+.+++.++..-+..+ +.-+.|-.-|+.. +.....+.++.+++-|.++.|.+.+ .+.+.++.+.+.
T Consensus 120 ~~~e~~~~i~~i~~~~~---I~~VilSGGDPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~ 196 (321)
T TIGR03822 120 SPAELDAAFAYIADHPE---IWEVILTGGDPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTS 196 (321)
T ss_pred CHHHHHHHHHHHHhCCC---ccEEEEeCCCcccCCHHHHHHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHc
Confidence 34555555544333333 3334444433332 2356777788888888776444432 344445555444
Q ss_pred CCceEEeeeccccc--ccccccHHHHHHHhCCeEEecccCCCcc
Q 024050 176 HPITAVQMEWSLWT--RDIEEEIIPLCRELGIGIVPYSPLGRGF 217 (273)
Q Consensus 176 ~~~~~~q~~~~l~~--~~~~~~l~~~~~~~gi~v~a~spl~~G~ 217 (273)
.....+-++.|-.. .......++.+++.||.+...+++..|.
T Consensus 197 g~~v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~v~~q~vLl~gv 240 (321)
T TIGR03822 197 GKTVYVALHANHARELTAEARAACARLIDAGIPMVSQSVLLRGV 240 (321)
T ss_pred CCcEEEEecCCChhhcCHHHHHHHHHHHHcCCEEEEEeeEeCCC
Confidence 42233444443211 0111567788889999999999998875
No 132
>PLN02681 proline dehydrogenase
Probab=49.35 E-value=2.3e+02 Score=26.62 Aligned_cols=161 Identities=14% Similarity=0.082 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHCCCC-ccccccCCCCCcHHHHHHHHHhcCCC----CCEEEEeccCcCCCCCccccccCCHHHHHHHHHH
Q 024050 42 DGISMIKHAFSKGIT-FFDTADVYGQNANEVLLGKALKQLPR----EKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEA 116 (273)
Q Consensus 42 ~~~~~l~~A~~~Gin-~~DtA~~Yg~g~se~~lg~~l~~~~r----~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (273)
...+++++|.+.|++ +||.=..|-...-..+.-+..++.++ .-|+++--.... .+++.+...++.
T Consensus 221 rl~~i~~~A~~~gv~l~IDAE~s~~q~aid~l~~~l~~~yN~~~~~~~V~~T~QaYLk----------~t~~~l~~~l~~ 290 (455)
T PLN02681 221 RLQKLCERAAQLGVPLLIDAEYTSLQPAIDYITYDLAREFNKGKDRPIVYGTYQAYLK----------DARERLRLDLER 290 (455)
T ss_pred HHHHHHHHHHHCCCEEEEeCCcccchhHHHHHHHHHHHHhccccCCCcEEEEEeCccc----------cCHHHHHHHHHH
Confidence 456788999999998 67765544332233334444443332 334444332222 246666666665
Q ss_pred HHHH---cCC-----CcccE-----EEecCCCCCCC-H---HHHH-HHHHHHHH---cCCccEEecCCCCHHHHHHHhhc
Q 024050 117 SLKR---LDV-----DYIDL-----YYQHRVDTSVP-I---EETI-GEMKKLVE---EGKIKYIGLSEASPGTIRRAHAV 175 (273)
Q Consensus 117 sL~~---L~~-----d~iDl-----~~lh~~~~~~~-~---~~~~-~~L~~l~~---~G~ir~iGvS~~~~~~l~~~~~~ 175 (273)
..+. +|+ -|.|- -+..+|++..+ . ...+ +.++.+.+ .|. .++.+.+|+.+.++.+.+.
T Consensus 291 a~~~g~~~gvKLVRGAY~e~E~~~a~~~g~~~pi~~~k~~Td~~Y~~~~~~lL~~~~~~~-~~~~vATHN~~Si~~a~~~ 369 (455)
T PLN02681 291 SEREGVPLGAKLVRGAYLSLERRLAASLGVPSPVHDTIQDTHACYNRCAEFLLEKASNGD-GEVMLATHNVESGELAAAK 369 (455)
T ss_pred HHhcCCCcceEEEecCCcchhhhhHHhcCCCCCCcCCHHHHHHHHHHHHHHHhhhhccCC-eeeEEecCCHHHHHHHHHH
Confidence 5442 221 12221 11222222211 1 2223 22333333 344 3789999999877666543
Q ss_pred -----CCceEEeeecccccccccccHHHHHHHhCCeEEecccCC
Q 024050 176 -----HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLG 214 (273)
Q Consensus 176 -----~~~~~~q~~~~l~~~~~~~~l~~~~~~~gi~v~a~spl~ 214 (273)
.+..-..++|-.+.-.. +++.....+.|..|.-|-|++
T Consensus 370 ~~~~gi~~~~~~veF~qL~GM~-d~ls~~L~~~G~~V~kYvPyG 412 (455)
T PLN02681 370 MNELGLHKGDPRVQFAQLLGMS-DNLSFGLGNAGFRVSKYLPYG 412 (455)
T ss_pred HHHcCCCCCCCCEEEeccCCCC-HHHHHHHHhcCCCEEEEeecc
Confidence 11111123333333222 445566667899999999998
No 133
>PF09989 DUF2229: CoA enzyme activase uncharacterised domain (DUF2229); InterPro: IPR018709 Proteins containing this domain include various bacterial hypothetical proteins, as well as CoA enzyme activases. The exact function of this domain has not, as yet, been defined.
Probab=48.87 E-value=47 Score=27.83 Aligned_cols=33 Identities=18% Similarity=0.281 Sum_probs=27.2
Q ss_pred ceEEeeecccccccccccHHHHHHHhCCeEEec
Q 024050 178 ITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPY 210 (273)
Q Consensus 178 ~~~~q~~~~l~~~~~~~~l~~~~~~~gi~v~a~ 210 (273)
+.++=-+||++|+....++.+..++.|+.|+..
T Consensus 186 Ivl~GrpY~~~D~~in~~I~~~l~~~G~~vit~ 218 (221)
T PF09989_consen 186 IVLLGRPYNIYDPFINMGIPDKLRSLGVPVITE 218 (221)
T ss_pred EEEEcCCCcCCCcccCCchHHHHHHCCCeeeCc
Confidence 444444999999988899999999999999864
No 134
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=48.47 E-value=46 Score=30.96 Aligned_cols=102 Identities=17% Similarity=0.143 Sum_probs=68.2
Q ss_pred CCcHHHHHHHHHhc---CCCCCEEEEeccCcCCCCCc---------cccccCCHHHHHHHHHHHHHHcCCCcccEEEecC
Q 024050 66 QNANEVLLGKALKQ---LPREKIQVATKFGIAGIGVA---------GVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHR 133 (273)
Q Consensus 66 ~g~se~~lg~~l~~---~~r~~~~i~tK~~~~~~~~~---------~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~ 133 (273)
+|.=|.++..+-+. ..+.+++++.-++...-..+ ....+.+...| -.||.+.|+|..-
T Consensus 147 qGTyeT~~~~~r~h~~gdL~Gk~~lTaGLGGMgGAQplA~~ma~~v~i~vevd~srI-------~~Rl~t~y~d~~a--- 216 (561)
T COG2987 147 QGTYETFAEAGRQHFGGDLKGKWVLTAGLGGMGGAQPLAATMAGAVCIAVEVDESRI-------DKRLRTGYLDEIA--- 216 (561)
T ss_pred echHHHHHHHHHHhcCCCccceEEEecCCCcccccchHHHHhcCceEEEEEeCHHHH-------HHHHhcchhhhhc---
Confidence 45566655544443 34678888888765431110 00112233333 3567788988643
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCccEEecCCCCHHHHHHHhhc-CCceEE
Q 024050 134 VDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAV-HPITAV 181 (273)
Q Consensus 134 ~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~-~~~~~~ 181 (273)
..++|.+...++..++|+-.+||+-..-++.++++++. ..|+++
T Consensus 217 ----~~ldeAl~~a~~~~~ag~p~SIgl~GNaaei~~~l~~r~~~pD~v 261 (561)
T COG2987 217 ----ETLDEALALAEEATAAGEPISIGLLGNAAEILPELLRRGIRPDLV 261 (561)
T ss_pred ----CCHHHHHHHHHHHHhcCCceEEEEeccHHHHHHHHHHcCCCCcee
Confidence 56899999999999999999999999989999998877 344443
No 135
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=48.44 E-value=1.5e+02 Score=24.33 Aligned_cols=133 Identities=13% Similarity=0.043 Sum_probs=69.6
Q ss_pred CHHHHHHHHHHHHHCCCCccccc----------cCCCCC--cHHHHHHHHHhcCC-CCCEEEEeccCcCCCCCccccccC
Q 024050 39 SEEDGISMIKHAFSKGITFFDTA----------DVYGQN--ANEVLLGKALKQLP-REKIQVATKFGIAGIGVAGVIVKG 105 (273)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~DtA----------~~Yg~g--~se~~lg~~l~~~~-r~~~~i~tK~~~~~~~~~~~~~~~ 105 (273)
+.++..+..+.+.++|+..||.- ..||.. ..-+.+-+.++... .-.+-|+.|+..... .
T Consensus 65 ~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~~--------~ 136 (231)
T cd02801 65 DPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGWD--------D 136 (231)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeeccC--------C
Confidence 57888899999999999888753 234421 12344444444311 111446666543220 0
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEecCCCCCC--CHHHHHHHHHHHHHcCCccEEecCCC-CHHHHHHHhhcCCceEEe
Q 024050 106 APDYVRSCCEASLKRLDVDYIDLYYQHRVDTSV--PIEETIGEMKKLVEEGKIKYIGLSEA-SPGTIRRAHAVHPITAVQ 182 (273)
Q Consensus 106 ~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~--~~~~~~~~L~~l~~~G~ir~iGvS~~-~~~~l~~~~~~~~~~~~q 182 (273)
.+...+ +-+.|+..|+ |.+.+|...... .....|+.+.++++.-.+--++.... +++.+.++++....+.++
T Consensus 137 -~~~~~~-~~~~l~~~Gv---d~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~ 211 (231)
T cd02801 137 -EEETLE-LAKALEDAGA---SALTVHGRTREQRYSGPADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQTGVDGVM 211 (231)
T ss_pred -chHHHH-HHHHHHHhCC---CEEEECCCCHHHcCCCCCCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHhcCCCEEE
Confidence 112222 2334555675 555667653211 11124566666666655555555543 566666666655555555
Q ss_pred ee
Q 024050 183 ME 184 (273)
Q Consensus 183 ~~ 184 (273)
+-
T Consensus 212 ig 213 (231)
T cd02801 212 IG 213 (231)
T ss_pred Ec
Confidence 53
No 136
>smart00642 Aamy Alpha-amylase domain.
Probab=48.28 E-value=27 Score=27.76 Aligned_cols=20 Identities=15% Similarity=0.307 Sum_probs=16.9
Q ss_pred ccHHHHHHHhCCeEEecccC
Q 024050 194 EEIIPLCRELGIGIVPYSPL 213 (273)
Q Consensus 194 ~~l~~~~~~~gi~v~a~spl 213 (273)
..+++.|+++||.|+.=-++
T Consensus 73 ~~lv~~~h~~Gi~vilD~V~ 92 (166)
T smart00642 73 KELVDAAHARGIKVILDVVI 92 (166)
T ss_pred HHHHHHHHHCCCEEEEEECC
Confidence 78999999999999965544
No 137
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=48.26 E-value=1.8e+02 Score=25.05 Aligned_cols=130 Identities=15% Similarity=0.140 Sum_probs=74.3
Q ss_pred CHHHHHHHHHHHHHCCCCccccc---cCCCCC----cHHHHHHHHHhcCCCC-CEEEEeccCcCCCCCccccccCCHHHH
Q 024050 39 SEEDGISMIKHAFSKGITFFDTA---DVYGQN----ANEVLLGKALKQLPRE-KIQVATKFGIAGIGVAGVIVKGAPDYV 110 (273)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~DtA---~~Yg~g----~se~~lg~~l~~~~r~-~~~i~tK~~~~~~~~~~~~~~~~~~~i 110 (273)
+.++..++.+.+.+.|+..|+.- +....+ ...+.+.+.++..++. ++-|+.|+.... +.+.+
T Consensus 109 ~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~----------~~~~~ 178 (289)
T cd02810 109 SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYF----------DLEDI 178 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCCC----------CHHHH
Confidence 57888899999999999888853 322211 2344555555542211 566888887532 34444
Q ss_pred HHHHHHHHHHcCCCcccEEEecCCCC-------------CC--------C-HHHHHHHHHHHHHcC--CccEEecCCC-C
Q 024050 111 RSCCEASLKRLDVDYIDLYYQHRVDT-------------SV--------P-IEETIGEMKKLVEEG--KIKYIGLSEA-S 165 (273)
Q Consensus 111 ~~~~~~sL~~L~~d~iDl~~lh~~~~-------------~~--------~-~~~~~~~L~~l~~~G--~ir~iGvS~~-~ 165 (273)
.+.++ .++..|.|.|.+ |.-.. .. + ..-.++.+.++++.= .+--||+... +
T Consensus 179 ~~~a~-~l~~~Gad~i~~---~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~~ 254 (289)
T cd02810 179 VELAK-AAERAGADGLTA---INTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGIDS 254 (289)
T ss_pred HHHHH-HHHHcCCCEEEE---EcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCC
Confidence 44444 466778655544 42110 00 0 012466667776653 5777777774 4
Q ss_pred HHHHHHHhhcCCceEEee
Q 024050 166 PGTIRRAHAVHPITAVQM 183 (273)
Q Consensus 166 ~~~l~~~~~~~~~~~~q~ 183 (273)
++.+.+++... .+.+|+
T Consensus 255 ~~da~~~l~~G-Ad~V~v 271 (289)
T cd02810 255 GEDVLEMLMAG-ASAVQV 271 (289)
T ss_pred HHHHHHHHHcC-ccHheE
Confidence 67777777654 555555
No 138
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=48.17 E-value=2.2e+02 Score=26.64 Aligned_cols=111 Identities=14% Similarity=0.054 Sum_probs=69.7
Q ss_pred ccCCHHHHHHHHHHHHHHcCCCcccEEEecCCCCC-CCHHHHHHHHHHHHHcCCccEEecCCCC---HHHHHHHhhcCCc
Q 024050 103 VKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS-VPIEETIGEMKKLVEEGKIKYIGLSEAS---PGTIRRAHAVHPI 178 (273)
Q Consensus 103 ~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~-~~~~~~~~~L~~l~~~G~ir~iGvS~~~---~~~l~~~~~~~~~ 178 (273)
...+++.+.+.+++..+.+. .++.+-+-.|.+. ...+.+++.|..++++..=..+.+++.. ++.++++.+.. +
T Consensus 58 ~~Ltpee~~~~i~~v~~~~~--~~~~V~iaG~GEPLl~~e~~~~~l~~~~~~~~~i~i~lsTNG~~l~e~i~~L~~~g-v 134 (442)
T TIGR01290 58 ELLTPEQALRKARQVAAEIP--QLSVVGIAGPGDPLANIGKTFQTLELVARQLPDVKLCLSTNGLMLPEHVDRLVDLG-V 134 (442)
T ss_pred ccCCHHHHHHHHHHHHHhcC--CCCEEEEecCCCcccCccccHHHHHHHHHhcCCCeEEEECCCCCCHHHHHHHHHCC-C
Confidence 34788899998888877662 4566777775443 3345688899999988211256776533 67777776652 4
Q ss_pred eEEeeeccccccccc---------------------------ccHHHHHHHhCCeEEecccCCCc
Q 024050 179 TAVQMEWSLWTRDIE---------------------------EEIIPLCRELGIGIVPYSPLGRG 216 (273)
Q Consensus 179 ~~~q~~~~l~~~~~~---------------------------~~l~~~~~~~gi~v~a~spl~~G 216 (273)
+.+.+.++-.++..- .+-++.+.+.|+.|....++-.|
T Consensus 135 d~V~islka~d~e~~~~Iy~~v~~~g~~~tG~~~~~il~e~~l~~l~~l~~~G~~v~v~~vlIpG 199 (442)
T TIGR01290 135 GHVTITINAIDPAVGEKIYPWVWYEGERYTGREAADLLIERQLEGLEKLTERGILVKVNSVLIPG 199 (442)
T ss_pred CeEEEeccCCCHHHHhhcchhhccccccccCcchHHHHHHHHHHHHHHHHhCCCeEEEEEEeeCC
Confidence 455555554442110 12345677888887777776654
No 139
>PRK08123 histidinol-phosphatase; Reviewed
Probab=48.10 E-value=1e+02 Score=26.45 Aligned_cols=24 Identities=21% Similarity=0.177 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHCCCCccccccCC
Q 024050 41 EDGISMIKHAFSKGITFFDTADVY 64 (273)
Q Consensus 41 ~~~~~~l~~A~~~Gin~~DtA~~Y 64 (273)
+...+++++|.+.|+..|=.+++.
T Consensus 19 ~~~e~~v~~Ai~~Gl~~i~~tdH~ 42 (270)
T PRK08123 19 DDLEAYIERAIELGFTEITFTEHA 42 (270)
T ss_pred CCHHHHHHHHHHcCCcEEEEeccC
Confidence 357899999999999977666664
No 140
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=48.08 E-value=2e+02 Score=25.51 Aligned_cols=135 Identities=11% Similarity=0.055 Sum_probs=77.7
Q ss_pred CHHHHHHHHHHHHHCCCCccccccC----------CCC--CcHHHHHHHHHhcC-CCCCEEEEeccCcCCCCCccccccC
Q 024050 39 SEEDGISMIKHAFSKGITFFDTADV----------YGQ--NANEVLLGKALKQL-PREKIQVATKFGIAGIGVAGVIVKG 105 (273)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~DtA~~----------Yg~--g~se~~lg~~l~~~-~r~~~~i~tK~~~~~~~~~~~~~~~ 105 (273)
+.++..++.+.+.+.|+..||.=-. +|. ..+-+.+.+.++.. .--++-|+.|+..... .
T Consensus 75 ~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~--------~ 146 (321)
T PRK10415 75 DPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWA--------P 146 (321)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEcccc--------C
Confidence 6788888888888899999994322 221 01123333333321 1114457777653221 0
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEecCCCCCCCH--HHHHHHHHHHHHcCCccEEecCC-CCHHHHHHHhhcCCceEEe
Q 024050 106 APDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPI--EETIGEMKKLVEEGKIKYIGLSE-ASPGTIRRAHAVHPITAVQ 182 (273)
Q Consensus 106 ~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~--~~~~~~L~~l~~~G~ir~iGvS~-~~~~~l~~~~~~~~~~~~q 182 (273)
+..... .+-+.++..| +|.+.+|.-+..... ..-|+.+.++++.=.|--||.-. .+++.++++++....+.++
T Consensus 147 ~~~~~~-~~a~~le~~G---~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgVm 222 (321)
T PRK10415 147 EHRNCV-EIAQLAEDCG---IQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALM 222 (321)
T ss_pred CcchHH-HHHHHHHHhC---CCEEEEecCccccccCCCcChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEEE
Confidence 111111 3334466777 466778865432111 13477788888876777777776 4788888888776677777
Q ss_pred eec
Q 024050 183 MEW 185 (273)
Q Consensus 183 ~~~ 185 (273)
+-=
T Consensus 223 iGR 225 (321)
T PRK10415 223 IGR 225 (321)
T ss_pred ECh
Confidence 743
No 141
>TIGR03247 glucar-dehydr glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized.
Probab=48.01 E-value=2.4e+02 Score=26.37 Aligned_cols=156 Identities=13% Similarity=0.079 Sum_probs=83.6
Q ss_pred CHHHHHHHHHHHHH-CCCCccccccCCCCCcHHHHHHHHHhcCCCCCEEEEeccCcCCCCCccccccCCHHHHHHHHHHH
Q 024050 39 SEEDGISMIKHAFS-KGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEAS 117 (273)
Q Consensus 39 ~~~~~~~~l~~A~~-~Gin~~DtA~~Yg~g~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~s 117 (273)
+.++..+..+.+++ .|++.|=.--.-..+......=+++++.- .++.|..=... .++.+. ..+.
T Consensus 180 ~~e~~~~~a~~~~~~~Gf~a~KiKvG~~~~~~Di~~v~avRea~-~d~~L~vDAN~----------~wt~~~----Ai~~ 244 (441)
T TIGR03247 180 TPEAVVRLAEAAYDRYGFRDFKLKGGVLRGEEEIEAVTALAKRF-PQARITLDPNG----------AWSLDE----AIAL 244 (441)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEecCCCChHHHHHHHHHHHHhC-CCCeEEEECCC----------CCCHHH----HHHH
Confidence 45666666666665 59986643210011112222233454422 24433332211 133333 2333
Q ss_pred HHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCcc-EEecCCCCHHHHHHHhhcCCceEEeeecccccccccccH
Q 024050 118 LKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRDIEEEI 196 (273)
Q Consensus 118 L~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~~l~~~~~~~~l 196 (273)
+++|. ++ +.++..|-+..+..+-++.+.+|++...|- ..|=+.++...+..+++..-++++|......--..-..+
T Consensus 245 ~~~Le-~~--~~~iEePv~~~d~~~~~~~la~Lr~~~~iPIa~dEs~~~~~~~~~li~~~avdi~~~d~~~gGIt~~~kI 321 (441)
T TIGR03247 245 CKDLK-GV--LAYAEDPCGAEQGYSGREVMAEFRRATGLPTATNMIATDWRQMGHALQLQAVDIPLADPHFWTMQGSVRV 321 (441)
T ss_pred HHHhh-hh--hceEeCCCCcccccchHHHHHHHHHhCCCCEEcCCccCCHHHHHHHHHhCCCCEEeccCCcchHHHHHHH
Confidence 34443 33 445666643322112377788887766554 234456788888888888778888887532111111678
Q ss_pred HHHHHHhCCeEEeccc
Q 024050 197 IPLCRELGIGIVPYSP 212 (273)
Q Consensus 197 ~~~~~~~gi~v~a~sp 212 (273)
.+.|+.+|+.+..++.
T Consensus 322 a~lA~a~Gi~v~~h~~ 337 (441)
T TIGR03247 322 AQMCHDWGLTWGSHSN 337 (441)
T ss_pred HHHHHHcCCEEEEeCC
Confidence 9999999999887654
No 142
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=47.79 E-value=2e+02 Score=25.38 Aligned_cols=138 Identities=14% Similarity=0.074 Sum_probs=80.0
Q ss_pred CHHHHHHHHHHHHHCCCCccccccCCC--------CCc----HHHHHHHHHhcC-CCCCEEEEeccCcCCCCCccccccC
Q 024050 39 SEEDGISMIKHAFSKGITFFDTADVYG--------QNA----NEVLLGKALKQL-PREKIQVATKFGIAGIGVAGVIVKG 105 (273)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg--------~g~----se~~lg~~l~~~-~r~~~~i~tK~~~~~~~~~~~~~~~ 105 (273)
+.++..++.+.+.+.|+..||.--... .|. ..+.+.+.++.. ..-++-|+.|+..... .
T Consensus 73 ~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~--------~ 144 (319)
T TIGR00737 73 DPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWD--------D 144 (319)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccC--------C
Confidence 678899999999999988888632111 121 234555555541 1223567888643221 0
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEecCCCCCCCH--HHHHHHHHHHHHcCCccEEecCC-CCHHHHHHHhhcCCceEEe
Q 024050 106 APDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPI--EETIGEMKKLVEEGKIKYIGLSE-ASPGTIRRAHAVHPITAVQ 182 (273)
Q Consensus 106 ~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~--~~~~~~L~~l~~~G~ir~iGvS~-~~~~~l~~~~~~~~~~~~q 182 (273)
....+ ..+-+.|+..|+ |.+.+|........ ...|+.+.++++.=.+--|+... .+++.++++++....+.++
T Consensus 145 ~~~~~-~~~a~~l~~~G~---d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad~Vm 220 (319)
T TIGR00737 145 AHINA-VEAARIAEDAGA---QAVTLHGRTRAQGYSGEANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDGVM 220 (319)
T ss_pred CcchH-HHHHHHHHHhCC---CEEEEEcccccccCCCchhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCCEEE
Confidence 11112 234555677785 55566754322111 23577778887776677777766 4678888888666677777
Q ss_pred eecccc
Q 024050 183 MEWSLW 188 (273)
Q Consensus 183 ~~~~l~ 188 (273)
+--.++
T Consensus 221 igR~~l 226 (319)
T TIGR00737 221 IGRGAL 226 (319)
T ss_pred EChhhh
Confidence 644433
No 143
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=47.46 E-value=2e+02 Score=25.43 Aligned_cols=120 Identities=13% Similarity=0.118 Sum_probs=69.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCccccccCCC--CCcHHHHHHHHHhcCC-CCCEEEEeccCcCCCCCccccccCCHHHHHHH
Q 024050 37 PVSEEDGISMIKHAFSKGITFFDTADVYG--QNANEVLLGKALKQLP-REKIQVATKFGIAGIGVAGVIVKGAPDYVRSC 113 (273)
Q Consensus 37 ~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg--~g~se~~lg~~l~~~~-r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~ 113 (273)
.++.++...+++.+.+.|+..|.-+..-. .-.-.+++.. +++.. ..++.|+|-.. .+.+
T Consensus 44 ~ls~eei~~li~~~~~~Gv~~I~~tGGEPllr~dl~~li~~-i~~~~~l~~i~itTNG~----------------ll~~- 105 (329)
T PRK13361 44 VLSLEELAWLAQAFTELGVRKIRLTGGEPLVRRGCDQLVAR-LGKLPGLEELSLTTNGS----------------RLAR- 105 (329)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECcCCCccccHHHHHHH-HHhCCCCceEEEEeChh----------------HHHH-
Confidence 36889999999999999998776543111 0112233322 23221 22455665421 1222
Q ss_pred HHHHHHHcCCCcccEEEecCCCCC--------CCHHHHHHHHHHHHHcCC----ccEEecCCCCHHHHHHHhhc
Q 024050 114 CEASLKRLDVDYIDLYYQHRVDTS--------VPIEETIGEMKKLVEEGK----IKYIGLSEASPGTIRRAHAV 175 (273)
Q Consensus 114 ~~~sL~~L~~d~iDl~~lh~~~~~--------~~~~~~~~~L~~l~~~G~----ir~iGvS~~~~~~l~~~~~~ 175 (273)
.-+.|...|++++- +.|+..+++ ...+.+++.++.+++.|. |..+.+...+.+.+.++++.
T Consensus 106 ~~~~L~~aGl~~v~-ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~in~v~~~g~N~~ei~~~~~~ 178 (329)
T PRK13361 106 FAAELADAGLKRLN-ISLDTLRPELFAALTRNGRLERVIAGIDAAKAAGFERIKLNAVILRGQNDDEVLDLVEF 178 (329)
T ss_pred HHHHHHHcCCCeEE-EEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCCCceEEEEEEECCCCHHHHHHHHHH
Confidence 33456667777665 455665432 236789999999999885 23344455666666665544
No 144
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=47.42 E-value=1.2e+02 Score=27.04 Aligned_cols=107 Identities=16% Similarity=0.225 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHCCCCccccccCCCCCcHHHHHHHHHhcCCCCCEEEEeccCcCCCCCccccccCCHHHHHHHHHHHHHH
Q 024050 41 EDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKR 120 (273)
Q Consensus 41 ~~~~~~l~~A~~~Gin~~DtA~~Yg~g~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~ 120 (273)
..-+++|+.+-+.|| .+|.|.. +++.+=+.+. . -+..+|+|......- .+..+.--.++++...++
T Consensus 149 ~~Gk~lV~~~N~LgI-iiDlSH~-----s~kt~~Dvl~-~-s~~PviaSHSN~~al------~~h~RNl~D~qlkaI~~~ 214 (313)
T COG2355 149 PFGKELVREMNELGI-IIDLSHL-----SDKTFWDVLD-L-SKAPVVASHSNARAL------VDHPRNLSDEQLKAIAET 214 (313)
T ss_pred HHHHHHHHHHHhcCC-EEEeccc-----CCccHHHHHh-c-cCCceEEecCCchhc------cCCCCCCCHHHHHHHHhc
Confidence 457899999999999 8999864 4566666776 2 445667776554431 122233345677777776
Q ss_pred cCCCcccEEEecCC-----CCCCCHHHHHHHHHHHHHcCCccEEecCC
Q 024050 121 LDVDYIDLYYQHRV-----DTSVPIEETIGEMKKLVEEGKIKYIGLSE 163 (273)
Q Consensus 121 L~~d~iDl~~lh~~-----~~~~~~~~~~~~L~~l~~~G~ir~iGvS~ 163 (273)
=|+ |.+-++-.. .....+++..+.+..+++.+=+++||+..
T Consensus 215 gGv--Igv~~~~~fl~~~~~~~atldd~v~hI~h~v~~~G~dhVglGs 260 (313)
T COG2355 215 GGV--IGVNFIPAFLRPGGAARATLDDLVRHIDHFVELVGIDHVGLGS 260 (313)
T ss_pred CCE--EEEEeehhhccCCCCCCCCHHHHHHHHHHHHHhcCcceeEecc
Confidence 664 444443222 13457899999999999999999999975
No 145
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=46.76 E-value=81 Score=26.15 Aligned_cols=63 Identities=22% Similarity=0.265 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEecCCCCH----HHHHHHhhc
Q 024050 107 PDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASP----GTIRRAHAV 175 (273)
Q Consensus 107 ~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~----~~l~~~~~~ 175 (273)
...+.+.+++.++.+|.+ +..+ .+...+.+...+.++.+.++| +..|=++..++ +.++++.+.
T Consensus 13 ~~~~~~g~~~~a~~~g~~---~~~~--~~~~~d~~~q~~~i~~~i~~~-~d~Iiv~~~~~~~~~~~l~~~~~~ 79 (257)
T PF13407_consen 13 WQQVIKGAKAAAKELGYE---VEIV--FDAQNDPEEQIEQIEQAISQG-VDGIIVSPVDPDSLAPFLEKAKAA 79 (257)
T ss_dssp HHHHHHHHHHHHHHHTCE---EEEE--EESTTTHHHHHHHHHHHHHTT-ESEEEEESSSTTTTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCE---EEEe--CCCCCCHHHHHHHHHHHHHhc-CCEEEecCCCHHHHHHHHHHHhhc
Confidence 456788899999999843 2222 333445677888889998888 77777765543 344444443
No 146
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=46.71 E-value=1.4e+02 Score=28.00 Aligned_cols=103 Identities=11% Similarity=0.074 Sum_probs=55.3
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEecCCCC--CCCHHHHHHHHHHHHHcC-CccE---------EecCCCCHHHHH--
Q 024050 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDT--SVPIEETIGEMKKLVEEG-KIKY---------IGLSEASPGTIR-- 170 (273)
Q Consensus 105 ~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~--~~~~~~~~~~L~~l~~~G-~ir~---------iGvS~~~~~~l~-- 170 (273)
.+.+... .+-+.|.++|++.|.+.-=...+. ..--++.|+.+..+++.. .++. +|.++++-+.++
T Consensus 23 ~~t~dkl-~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv~~~ 101 (448)
T PRK12331 23 MTTEEML-PILEKLDNAGYHSLEMWGGATFDACLRFLNEDPWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVVESF 101 (448)
T ss_pred cCHHHHH-HHHHHHHHcCCCEEEecCCccchhhhccCCCCHHHHHHHHHHhCCCCEEEEEeccccccccccCchhhHHHH
Confidence 4444444 455568889999999830000000 000123577777776652 2332 466666555444
Q ss_pred --HHhhcCCceEEeeecccccccccccHHHHHHHhCCeEEe
Q 024050 171 --RAHAVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVP 209 (273)
Q Consensus 171 --~~~~~~~~~~~q~~~~l~~~~~~~~l~~~~~~~gi~v~a 209 (273)
++.+. .++++.+-.++-+.+.-...+++++++|+.+.+
T Consensus 102 v~~A~~~-Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~ 141 (448)
T PRK12331 102 VQKSVEN-GIDIIRIFDALNDVRNLETAVKATKKAGGHAQV 141 (448)
T ss_pred HHHHHHC-CCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEE
Confidence 33333 345555544443322226689999999987654
No 147
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=46.05 E-value=1.9e+02 Score=24.65 Aligned_cols=84 Identities=18% Similarity=0.094 Sum_probs=51.3
Q ss_pred ccEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEecCCCCHHHHHHHhhcCCceEEeeecccccccc-cccHHHHHHHhC
Q 024050 126 IDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRDI-EEEIIPLCRELG 204 (273)
Q Consensus 126 iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~~l~~~~~-~~~l~~~~~~~g 204 (273)
.++.++..|-. .+-++.+.++. .+.=-..|=|-++...+.++++...++++|+..+..---. -..+.+.|+.+|
T Consensus 153 ~~i~~iEqP~~----~~d~~~~~~l~-~~~PIa~dEs~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~a~~~g 227 (263)
T cd03320 153 GRIEYIEQPLP----PDDLAELRRLA-AGVPIALDESLRRLDDPLALAAAGALGALVLKPALLGGPRALLELAEEARARG 227 (263)
T ss_pred cCCceEECCCC----hHHHHHHHHhh-cCCCeeeCCccccccCHHHHHhcCCCCEEEECchhcCCHHHHHHHHHHHHHcC
Confidence 34455555432 23455666665 3333344555566677777777777788888766543211 167888999999
Q ss_pred CeEEecccCC
Q 024050 205 IGIVPYSPLG 214 (273)
Q Consensus 205 i~v~a~spl~ 214 (273)
+.++..+-+.
T Consensus 228 i~~~~~~~~e 237 (263)
T cd03320 228 IPAVVSSALE 237 (263)
T ss_pred CCEEEEcchh
Confidence 9988764444
No 148
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=45.88 E-value=2.3e+02 Score=25.55 Aligned_cols=151 Identities=10% Similarity=0.026 Sum_probs=85.5
Q ss_pred CHHHHHHHHHHHHHCCCCccccccCCCCC--cHHHHHHHHHhcCCCCCEEEEeccCcCCCCCccccccCCHHHHHHHHHH
Q 024050 39 SEEDGISMIKHAFSKGITFFDTADVYGQN--ANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEA 116 (273)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g--~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (273)
+.++..+.++.+.+.|++.|=.- .++.. ......=+.+++.--+++.|.-=.. . .++.+...+ +-+
T Consensus 143 ~~~~~~~~a~~~~~~Gf~~~Kik-~~~~~~~~~di~~i~~vR~~~G~~~~l~vDan--~--------~~~~~~A~~-~~~ 210 (368)
T cd03329 143 SPEAYADFAEECKALGYRAIKLH-PWGPGVVRRDLKACLAVREAVGPDMRLMHDGA--H--------WYSRADALR-LGR 210 (368)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEe-cCCchhHHHHHHHHHHHHHHhCCCCeEEEECC--C--------CcCHHHHHH-HHH
Confidence 56778888888999999987542 12110 1111222344431122333332221 1 133333222 222
Q ss_pred HHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEecC--CCC-HHHHHHHhhcCCceEEeeecccccccc-
Q 024050 117 SLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS--EAS-PGTIRRAHAVHPITAVQMEWSLWTRDI- 192 (273)
Q Consensus 117 sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS--~~~-~~~l~~~~~~~~~~~~q~~~~l~~~~~- 192 (273)
.|+.+ ++.++..|- +.. -++.+.+|+++-.+. |... -++ +..+.++++...++++|+..+..---.
T Consensus 211 ~l~~~-----~l~~iEeP~---~~~-d~~~~~~l~~~~~ip-Ia~~E~~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit~ 280 (368)
T cd03329 211 ALEEL-----GFFWYEDPL---REA-SISSYRWLAEKLDIP-ILGTEHSRGALESRADWVLAGATDFLRADVNLVGGITG 280 (368)
T ss_pred Hhhhc-----CCCeEeCCC---Cch-hHHHHHHHHhcCCCC-EEccCcccCcHHHHHHHHHhCCCCEEecCccccCCHHH
Confidence 33333 444445443 222 347778888876555 4443 366 888888888888899999777653211
Q ss_pred cccHHHHHHHhCCeEEecc
Q 024050 193 EEEIIPLCRELGIGIVPYS 211 (273)
Q Consensus 193 ~~~l~~~~~~~gi~v~a~s 211 (273)
-..+...|.++|+.+...+
T Consensus 281 ~~~ia~~a~~~gi~~~~h~ 299 (368)
T cd03329 281 AMKTAHLAEAFGLDVELHG 299 (368)
T ss_pred HHHHHHHHHHcCCEEEEEC
Confidence 1678999999999997654
No 149
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=45.77 E-value=2.3e+02 Score=25.64 Aligned_cols=88 Identities=13% Similarity=0.128 Sum_probs=56.9
Q ss_pred EecCCCCC-----------CCHHHHHHHHHHHH-HcCC---ccEEecCC--CCHHHHHHHhh---cCCceEEeeeccccc
Q 024050 130 YQHRVDTS-----------VPIEETIGEMKKLV-EEGK---IKYIGLSE--ASPGTIRRAHA---VHPITAVQMEWSLWT 189 (273)
Q Consensus 130 ~lh~~~~~-----------~~~~~~~~~L~~l~-~~G~---ir~iGvS~--~~~~~l~~~~~---~~~~~~~q~~~~l~~ 189 (273)
.||.+++. .+++++++++.++. +.|+ |+|+=+.. .+.+.++++.+ ..+..++-++||.+.
T Consensus 225 SLha~d~e~r~~l~pv~~~~~l~~ll~~l~~y~~~~~~~i~ieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPyn~~~ 304 (356)
T PRK14462 225 SLHAVDDELRSELMPINKAYNIESIIDAVRKFPIDQRKRVMFEYLVIKDVNDDLKSAKKLVKLLNGIKAKVNLILFNPHE 304 (356)
T ss_pred ECCCCCHHHHHHhCCCCccCCHHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhhcCcEEEEEeCCCCC
Confidence 48999753 33567888887554 5554 66665554 45566555544 345678888999876
Q ss_pred cc----cc----ccHHHHHHHhCCeEEecccCCCcc
Q 024050 190 RD----IE----EEIIPLCRELGIGIVPYSPLGRGF 217 (273)
Q Consensus 190 ~~----~~----~~l~~~~~~~gi~v~a~spl~~G~ 217 (273)
.. +. ....+..+++||.+......+.-+
T Consensus 305 ~~~~~~ps~e~i~~f~~~l~~~gi~vtvR~~~G~dI 340 (356)
T PRK14462 305 GSKFERPSLEDMIKFQDYLNSKGLLCTIRESKGLDI 340 (356)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCcEEEeCCCCCch
Confidence 31 11 335556677899999987776544
No 150
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=45.58 E-value=1.7e+02 Score=27.01 Aligned_cols=103 Identities=16% Similarity=0.280 Sum_probs=69.2
Q ss_pred HHHHHHHHCCCCccccccCCC-CCcHHHHHHHHHhcCCCCCEEEEeccCcCCCCCccccccCCHHHHHHHHHHHHHHcCC
Q 024050 45 SMIKHAFSKGITFFDTADVYG-QNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDV 123 (273)
Q Consensus 45 ~~l~~A~~~Gin~~DtA~~Yg-~g~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~ 123 (273)
..|+.++++| .+-..=.|| +|.--..+.+.|...-.-+|.-.+=+ ..+.+.+++.+++..+.++.
T Consensus 37 ~~lrr~v~~~--~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv------------~~gvkdlr~i~e~a~~~~~~ 102 (436)
T COG2256 37 KPLRRAVEAG--HLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV------------TSGVKDLREIIEEARKNRLL 102 (436)
T ss_pred chHHHHHhcC--CCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc------------cccHHHHHHHHHHHHHHHhc
Confidence 5788899987 334445788 56667778888875222233322211 13478899999999888775
Q ss_pred CcccEEEe---cCCCCCCCHHHHHHHHHHHHHcCCccEEecCCCCH
Q 024050 124 DYIDLYYQ---HRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASP 166 (273)
Q Consensus 124 d~iDl~~l---h~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~ 166 (273)
..==+++| |+.+ ...-++|.-.++.|.|--||.++-+|
T Consensus 103 gr~tiLflDEIHRfn-----K~QQD~lLp~vE~G~iilIGATTENP 143 (436)
T COG2256 103 GRRTILFLDEIHRFN-----KAQQDALLPHVENGTIILIGATTENP 143 (436)
T ss_pred CCceEEEEehhhhcC-----hhhhhhhhhhhcCCeEEEEeccCCCC
Confidence 44445554 4443 34567888999999999999997554
No 151
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=45.39 E-value=64 Score=26.66 Aligned_cols=59 Identities=8% Similarity=0.236 Sum_probs=37.5
Q ss_pred HHHHHHHHHHcCCccEEecCC-CCHHHHHHHhhcC-CceEEeeecccccccccccHHHHHHHhCCeEEe
Q 024050 143 TIGEMKKLVEEGKIKYIGLSE-ASPGTIRRAHAVH-PITAVQMEWSLWTRDIEEEIIPLCRELGIGIVP 209 (273)
Q Consensus 143 ~~~~L~~l~~~G~ir~iGvS~-~~~~~l~~~~~~~-~~~~~q~~~~l~~~~~~~~l~~~~~~~gi~v~a 209 (273)
.++.+++++++.-=-.||.-+ .++++++++++.. .|.+ .+....+++++|+++||.++.
T Consensus 42 a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~Fiv--------SP~~~~~vi~~a~~~~i~~iP 102 (201)
T PRK06015 42 ALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIV--------SPGTTQELLAAANDSDVPLLP 102 (201)
T ss_pred HHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEE--------CCCCCHHHHHHHHHcCCCEeC
Confidence 445555555443324588876 5788888888773 3321 222336789999999987773
No 152
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=45.35 E-value=1.9e+02 Score=26.34 Aligned_cols=91 Identities=12% Similarity=0.138 Sum_probs=60.5
Q ss_pred cEEEecCCCCC-----------CCHHHHHHHHHHHH-HcCC---ccEEecCC--CCHHH---HHHHhhcC---CceEEee
Q 024050 127 DLYYQHRVDTS-----------VPIEETIGEMKKLV-EEGK---IKYIGLSE--ASPGT---IRRAHAVH---PITAVQM 183 (273)
Q Consensus 127 Dl~~lh~~~~~-----------~~~~~~~~~L~~l~-~~G~---ir~iGvS~--~~~~~---l~~~~~~~---~~~~~q~ 183 (273)
=.+.||.+++. .+++++++++.++. +.|+ |+|+=+.+ .+.+. |.++++.. ...++-+
T Consensus 240 LavSLha~d~e~R~~l~p~n~~~~l~~ll~a~~~~~~~~grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~VNLI 319 (373)
T PRK14459 240 LAVSLHAPDDELRDELVPVNTRWKVDEVLDAARYYADATGRRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHVNLI 319 (373)
T ss_pred EEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEEEEE
Confidence 45788999753 34788899987776 5465 56665553 34444 44444444 5678888
Q ss_pred eccccccc----c-c---ccHHHHHHHhCCeEEecccCCCcc
Q 024050 184 EWSLWTRD----I-E---EEIIPLCRELGIGIVPYSPLGRGF 217 (273)
Q Consensus 184 ~~~l~~~~----~-~---~~l~~~~~~~gi~v~a~spl~~G~ 217 (273)
+||..... . . ....+..+++||.+..+...+.-+
T Consensus 320 pyNp~~~~~y~~~~~~~~~~F~~~L~~~gi~~tiR~~~G~dI 361 (373)
T PRK14459 320 PLNPTPGSKWTASPPEVEREFVRRLRAAGVPCTVRDTRGQEI 361 (373)
T ss_pred ccCCCCCCCCcCCCHHHHHHHHHHHHHCCCeEEeeCCCCcCH
Confidence 99986531 1 1 457777889999999988877543
No 153
>PRK09358 adenosine deaminase; Provisional
Probab=45.29 E-value=2.2e+02 Score=25.21 Aligned_cols=104 Identities=13% Similarity=0.038 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEecCCC-CHHHHHHHhhcCCceEEeeec
Q 024050 107 PDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEA-SPGTIRRAHAVHPITAVQMEW 185 (273)
Q Consensus 107 ~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~-~~~~l~~~~~~~~~~~~q~~~ 185 (273)
++...+.+++.++...-+.+--+-++.+....+.+...+.++.+++.|.--.+=++.. +++.+..++....++.+-.-+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~vvg~~l~g~e~~~~~~~~~~~~~~A~~~g~~~~~H~~E~~~~~~~~~al~~lg~~ri~Hg~ 227 (340)
T PRK09358 148 EEAAARELEALAARYRDDGVVGFDLAGDELGFPPSKFARAFDRARDAGLRLTAHAGEAGGPESIWEALDELGAERIGHGV 227 (340)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEeCCCcCCCCCHHHHHHHHHHHHHCCCCeEEcCCCCCchhHHHHHHHHcCCcccchhh
Confidence 4445556666665422122222233444333445666677788888887655555543 234455555422222221111
Q ss_pred ccccccccccHHHHHHHhCCeEEecccCC
Q 024050 186 SLWTRDIEEEIIPLCRELGIGIVPYSPLG 214 (273)
Q Consensus 186 ~l~~~~~~~~l~~~~~~~gi~v~a~spl~ 214 (273)
.+.+ ..++++..+++||.|.. .|..
T Consensus 228 ~l~~---~~~~~~~l~~~gi~v~~-cP~S 252 (340)
T PRK09358 228 RAIE---DPALMARLADRRIPLEV-CPTS 252 (340)
T ss_pred hhcc---CHHHHHHHHHcCCeEEE-CCCc
Confidence 1111 15688999999988753 3443
No 154
>TIGR00035 asp_race aspartate racemase.
Probab=44.98 E-value=1.2e+02 Score=25.29 Aligned_cols=63 Identities=14% Similarity=0.106 Sum_probs=45.5
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEecCCCCC------------CCHHHHHHHHHHHHHcCCccEEecCCCCHHH
Q 024050 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS------------VPIEETIGEMKKLVEEGKIKYIGLSEASPGT 168 (273)
Q Consensus 105 ~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~------------~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~ 168 (273)
.+.+..++-++.+-.+.+-++++.+.+++|+.. .......+.++.|.+.| +..|-++..++..
T Consensus 14 at~~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr~~~~~~~~~~~~~~~l~~~~~~L~~~g-~d~iviaCNTah~ 88 (229)
T TIGR00035 14 ATAELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTAYILGRGEDRPRPILIDIAVKLENAG-ADFIIMPCNTAHK 88 (229)
T ss_pred HHHHHHHHHHHHhHHhcCCCCCceeeeeCCCHHHHHHHHhcCCcchHHHHHHHHHHHHHHcC-CCEEEECCccHHH
Confidence 346667777777777888899999999999642 12334566677776655 7899998877655
No 155
>PRK00077 eno enolase; Provisional
Probab=44.60 E-value=2.2e+02 Score=26.35 Aligned_cols=96 Identities=10% Similarity=0.051 Sum_probs=62.7
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcC--CccEEecCC--CCHHHHHHHhhcCCceE
Q 024050 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEG--KIKYIGLSE--ASPGTIRRAHAVHPITA 180 (273)
Q Consensus 105 ~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G--~ir~iGvS~--~~~~~l~~~~~~~~~~~ 180 (273)
++++.....+.+.++. .+++++..|-... -|+.+.+|.+.- ++.-.|=-. .++..+.++++....++
T Consensus 261 ~s~~e~~~~~~~l~e~-----y~i~~iEdPl~~~----D~~g~~~L~~~~~~~ipI~gdE~~~t~~~~~~~~i~~~a~d~ 331 (425)
T PRK00077 261 LTSEEMIDYLAELVDK-----YPIVSIEDGLDEN----DWEGWKLLTEKLGDKVQLVGDDLFVTNTKRLKKGIEKGAANS 331 (425)
T ss_pred CCHHHHHHHHHHHHhh-----CCcEEEEcCCCCc----cHHHHHHHHHhcCCCCeEEcCCCccCCHHHHHHHHHhCCCCE
Confidence 4566566655666554 4577777775433 356666666653 454333222 36888999988888888
Q ss_pred Eeeeccccccccc-ccHHHHHHHhCCeEEe
Q 024050 181 VQMEWSLWTRDIE-EEIIPLCRELGIGIVP 209 (273)
Q Consensus 181 ~q~~~~l~~~~~~-~~l~~~~~~~gi~v~a 209 (273)
+|+..+-.---.+ .++...|+.+|+.++.
T Consensus 332 v~ik~~~~GGitea~~ia~lA~~~gi~~~v 361 (425)
T PRK00077 332 ILIKVNQIGTLTETLDAIELAKRAGYTAVV 361 (425)
T ss_pred EEeCccccCCHHHHHHHHHHHHHcCCeEEE
Confidence 8887776543212 6789999999998665
No 156
>PRK12928 lipoyl synthase; Provisional
Probab=44.28 E-value=1.6e+02 Score=25.76 Aligned_cols=76 Identities=20% Similarity=0.237 Sum_probs=47.1
Q ss_pred CHHHHHHHHHHHHHcC---CccE---EecCCCCHHHHHHHhhc---CCceEEee-eccc-------cccc---cc-ccHH
Q 024050 139 PIEETIGEMKKLVEEG---KIKY---IGLSEASPGTIRRAHAV---HPITAVQM-EWSL-------WTRD---IE-EEII 197 (273)
Q Consensus 139 ~~~~~~~~L~~l~~~G---~ir~---iGvS~~~~~~l~~~~~~---~~~~~~q~-~~~l-------~~~~---~~-~~l~ 197 (273)
..++.++.++.+++.| .++. +|+ .-+.+.+.+.+.. ..++.+.+ +|.. ..+- .+ ..+-
T Consensus 186 t~e~~le~l~~ak~~gp~i~~~s~iIvG~-GET~ed~~etl~~Lrel~~d~v~i~~Yl~p~~~~~~v~~~~~~~~f~~~~ 264 (290)
T PRK12928 186 DYQRSLDLLARAKELAPDIPTKSGLMLGL-GETEDEVIETLRDLRAVGCDRLTIGQYLRPSLAHLPVQRYWTPEEFEALG 264 (290)
T ss_pred CHHHHHHHHHHHHHhCCCceecccEEEeC-CCCHHHHHHHHHHHHhcCCCEEEEEcCCCCCccCCceeeccCHHHHHHHH
Confidence 4577889999999988 3332 366 5555555544333 44444444 5543 1111 11 6677
Q ss_pred HHHHHhCCeEEecccCCC
Q 024050 198 PLCRELGIGIVPYSPLGR 215 (273)
Q Consensus 198 ~~~~~~gi~v~a~spl~~ 215 (273)
+.+.+.|...++.+||-.
T Consensus 265 ~~~~~~g~~~~~~~p~~r 282 (290)
T PRK12928 265 QIARELGFSHVRSGPLVR 282 (290)
T ss_pred HHHHHcCCceeEecCccc
Confidence 888899999999988863
No 157
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=44.11 E-value=87 Score=25.78 Aligned_cols=86 Identities=12% Similarity=0.059 Sum_probs=53.6
Q ss_pred CcccEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEecCCCCHHHHHHHhhcCCceEEeeeccc-ccccccccHHHHHHH
Q 024050 124 DYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHPITAVQMEWSL-WTRDIEEEIIPLCRE 202 (273)
Q Consensus 124 d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~~l-~~~~~~~~l~~~~~~ 202 (273)
....+..+.+.. .-+...+|.+.|- ..+-++-.+.+.|.++++-....++-..... -.......+++.|++
T Consensus 21 ~~~~V~~l~R~~-------~~~~~~~l~~~g~-~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~ 92 (233)
T PF05368_consen 21 AGFSVRALVRDP-------SSDRAQQLQALGA-EVVEADYDDPESLVAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKA 92 (233)
T ss_dssp TTGCEEEEESSS-------HHHHHHHHHHTTT-EEEES-TT-HHHHHHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEecc-------chhhhhhhhcccc-eEeecccCCHHHHHHHHcCCceEEeecCcchhhhhhhhhhHHHhhhc
Confidence 345677766653 2223455666776 3566666688889988886555444444332 111223779999999
Q ss_pred hCCeEEecccCCCcc
Q 024050 203 LGIGIVPYSPLGRGF 217 (273)
Q Consensus 203 ~gi~v~a~spl~~G~ 217 (273)
.||..+.+|.++...
T Consensus 93 agVk~~v~ss~~~~~ 107 (233)
T PF05368_consen 93 AGVKHFVPSSFGADY 107 (233)
T ss_dssp HT-SEEEESEESSGT
T ss_pred cccceEEEEEecccc
Confidence 999999999987554
No 158
>PLN00191 enolase
Probab=43.42 E-value=1.5e+02 Score=27.83 Aligned_cols=98 Identities=11% Similarity=0.107 Sum_probs=66.3
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEecC--CCCHHHHHHHhhcCCceEEe
Q 024050 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS--EASPGTIRRAHAVHPITAVQ 182 (273)
Q Consensus 105 ~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS--~~~~~~l~~~~~~~~~~~~q 182 (273)
.+++...+-++..++ ..++.++..|-.. +-|+.+.+|.+..++.=+|=- ..+++.+.++++....++++
T Consensus 295 ~s~~e~i~~~~~L~~-----~y~I~~IEDPl~~----~D~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~I~~~aad~i~ 365 (457)
T PLN00191 295 KSGDELIDLYKEFVS-----DYPIVSIEDPFDQ----DDWEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQEKACNALL 365 (457)
T ss_pred cCHHHHHHHHHHHhh-----cCCcEEEECCCCc----ccHHHHHHHHccCCCcEEccCcccCCHHHHHHHHHhCCCCEEE
Confidence 355555555555443 3456777777442 346777788888777655511 25688899999888788888
Q ss_pred eeccccccccc-ccHHHHHHHhCCeEEecc
Q 024050 183 MEWSLWTRDIE-EEIIPLCRELGIGIVPYS 211 (273)
Q Consensus 183 ~~~~l~~~~~~-~~l~~~~~~~gi~v~a~s 211 (273)
+..|-.---.+ .++.+.|+++|+.++...
T Consensus 366 iKl~qiGGITea~~~a~lA~~~G~~~~ish 395 (457)
T PLN00191 366 LKVNQIGTVTESIEAVKMSKAAGWGVMTSH 395 (457)
T ss_pred ecccccCCHHHHHHHHHHHHHCCCEEEeCC
Confidence 87775443222 678999999999998743
No 159
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=43.37 E-value=2.1e+02 Score=25.81 Aligned_cols=92 Identities=13% Similarity=0.192 Sum_probs=58.7
Q ss_pred ccE-EEecCCCCC-----------CCHHHHHHHHHHHHHcC----CccEEecC--CCCHHHHHHHhhc---CCceEEeee
Q 024050 126 IDL-YYQHRVDTS-----------VPIEETIGEMKKLVEEG----KIKYIGLS--EASPGTIRRAHAV---HPITAVQME 184 (273)
Q Consensus 126 iDl-~~lh~~~~~-----------~~~~~~~~~L~~l~~~G----~ir~iGvS--~~~~~~l~~~~~~---~~~~~~q~~ 184 (273)
+-+ +.||.+++. .+++++++++.+..+.+ +++++=+. |.+.+.++++.+. .+..++-++
T Consensus 207 ~~LaiSL~a~~~e~r~~I~pink~~~l~~l~~a~~~~~~~~~~~v~ieyvLI~GvNDs~e~~~~L~~ll~~l~~~vnlIP 286 (349)
T PRK14463 207 VNLAVSLNATTDEVRDRIMPVNRRYPLAELLAACKAFPLPGRRKITIEYVMIRGLNDSLEDAKRLVRLLSDIPSKVNLIP 286 (349)
T ss_pred eEEEEeCCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhccCceEEEEe
Confidence 334 678988653 23567788887776654 23455444 3455666555443 456777789
Q ss_pred ccccccc----cc----ccHHHHHHHhCCeEEecccCCCcc
Q 024050 185 WSLWTRD----IE----EEIIPLCRELGIGIVPYSPLGRGF 217 (273)
Q Consensus 185 ~~l~~~~----~~----~~l~~~~~~~gi~v~a~spl~~G~ 217 (273)
||..... +. ....+..+++||.+..+.+.+..+
T Consensus 287 yn~~~~~~~~~ps~e~i~~f~~~L~~~gi~v~vR~~~G~di 327 (349)
T PRK14463 287 FNEHEGCDFRSPTQEAIDRFHKYLLDKHVTVITRSSRGSDI 327 (349)
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCcch
Confidence 9986521 11 445667778999999998887544
No 160
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=43.03 E-value=2.6e+02 Score=25.48 Aligned_cols=148 Identities=10% Similarity=-0.047 Sum_probs=82.4
Q ss_pred CHHHHHHHHHHHHHCCCCccccccCCCC-CcHHHHHHHHHhcCCCCCEEEEeccCcCCCCCccccccCCHHHHHHHHHHH
Q 024050 39 SEEDGISMIKHAFSKGITFFDTADVYGQ-NANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEAS 117 (273)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~-g~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~s 117 (273)
+.++..+.+..+++.|++.|=.--.... ....+.+ +.+++.-.+++-|..=... .++.+... +.
T Consensus 160 ~~~~~~~~a~~~~~~Gf~~~Kikvg~~~~~~di~~v-~avRe~~G~~~~l~vDaN~----------~w~~~~A~----~~ 224 (385)
T cd03326 160 DLGRLRDEMRRYLDRGYTVVKIKIGGAPLDEDLRRI-EAALDVLGDGARLAVDANG----------RFDLETAI----AY 224 (385)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHH-HHHHHhcCCCCeEEEECCC----------CCCHHHHH----HH
Confidence 4566777778888999987643211000 0112223 3444311123333322211 13333322 23
Q ss_pred HHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCcc-EEecCCCCHHHHHHHhhcCCc----eEEeeecccccccc
Q 024050 118 LKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPGTIRRAHAVHPI----TAVQMEWSLWTRDI 192 (273)
Q Consensus 118 L~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~----~~~q~~~~l~~~~~ 192 (273)
++.|. .+++.++..|-+. +-++.+.+|.+...+- ..|=|.++...+..+++..-. +++|+..+-.---.
T Consensus 225 ~~~l~--~~~~~~iEeP~~~----~d~~~~~~L~~~~~iPIa~gEs~~~~~~~~~li~~~a~~~~~div~~d~~~~GGit 298 (385)
T cd03326 225 AKALA--PYGLRWYEEPGDP----LDYALQAELADHYDGPIATGENLFSLQDARNLLRYGGMRPDRDVLQFDPGLSYGLP 298 (385)
T ss_pred HHHhh--CcCCCEEECCCCc----cCHHHHHHHHhhCCCCEEcCCCcCCHHHHHHHHHhCCccccCCEEEeCchhhCCHH
Confidence 33332 3466677766443 3467777888776554 445566788888888887654 88888766543211
Q ss_pred -cccHHHHHHHhCCeE
Q 024050 193 -EEEIIPLCRELGIGI 207 (273)
Q Consensus 193 -~~~l~~~~~~~gi~v 207 (273)
-..+.+.|..+|+.+
T Consensus 299 ~~~kia~lA~a~gi~~ 314 (385)
T cd03326 299 EYLRMLDVLEAHGWSR 314 (385)
T ss_pred HHHHHHHHHHHcCCCC
Confidence 167899999999983
No 161
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=42.99 E-value=2.3e+02 Score=24.83 Aligned_cols=40 Identities=18% Similarity=0.165 Sum_probs=20.5
Q ss_pred HHHHHHHHHcCCccEEecCCC-CHHHHHHHhhcCCceEEee
Q 024050 144 IGEMKKLVEEGKIKYIGLSEA-SPGTIRRAHAVHPITAVQM 183 (273)
Q Consensus 144 ~~~L~~l~~~G~ir~iGvS~~-~~~~l~~~~~~~~~~~~q~ 183 (273)
++.+.++++.=.+--++.-+. +++.++++++....+.+++
T Consensus 270 ~~~~~~ir~~~~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~i 310 (327)
T cd02803 270 LELAEKIKKAVKIPVIAVGGIRDPEVAEEILAEGKADLVAL 310 (327)
T ss_pred HHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCCCeeee
Confidence 344444444434444555553 3666666666544555544
No 162
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=42.96 E-value=2.3e+02 Score=24.82 Aligned_cols=184 Identities=14% Similarity=0.125 Sum_probs=88.9
Q ss_pred cceeccccCCCCCCCCCCHHHHHHHHHHHHHC-CCCccccccCCCCCc---HHHHHHHHHhc--CCCCCEEEEeccCcCC
Q 024050 22 KLGYGCMNLSGGYSSPVSEEDGISMIKHAFSK-GITFFDTADVYGQNA---NEVLLGKALKQ--LPREKIQVATKFGIAG 95 (273)
Q Consensus 22 ~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~-Gin~~DtA~~Yg~g~---se~~lg~~l~~--~~r~~~~i~tK~~~~~ 95 (273)
.|.||++.-+.......+.++..+.+...++. |++.+|--.-|+.-. +-..+-++|+. ..+..+.|+.-++-..
T Consensus 71 iiS~GG~~g~~~~~~~~~~~~~~~a~~~~i~~y~~dgiDfDiE~~~~~d~~~~~~~~~al~~Lq~~~p~l~vs~Tlp~~p 150 (294)
T cd06543 71 IVSFGGASGTPLATSCTSADQLAAAYQKVIDAYGLTHLDFDIEGGALTDTAAIDRRAQALALLQKEYPDLKISFTLPVLP 150 (294)
T ss_pred EEEecCCCCCccccCcccHHHHHHHHHHHHHHhCCCeEEEeccCCccccchhHHHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 35777766332111223566666666666654 999999866665211 12445556654 2223455554443222
Q ss_pred CCCccccccCCHHHHHHHHHHHHHHcC--CCcccEEEecCCCC--CCCH-HHHHHHHHHHHHcCCccEEecCCCCHHHHH
Q 024050 96 IGVAGVIVKGAPDYVRSCCEASLKRLD--VDYIDLYYQHRVDT--SVPI-EETIGEMKKLVEEGKIKYIGLSEASPGTIR 170 (273)
Q Consensus 96 ~~~~~~~~~~~~~~i~~~~~~sL~~L~--~d~iDl~~lh~~~~--~~~~-~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~ 170 (273)
. .+++..+ .+-+..+.-| +|+|.++-...-.. ..+. ..+..+.+.++.+=+--+=+ ++..++-
T Consensus 151 ~-------gl~~~g~--~~l~~a~~~Gv~~d~VNiMtmDyg~~~~~~~mg~~a~~aa~~~~~ql~~~~~~---~s~~~~~ 218 (294)
T cd06543 151 T-------GLTPDGL--NVLEAAAANGVDLDTVNIMTMDYGSSAGSQDMGAAAISAAESLHDQLKDLYPK---LSDAELW 218 (294)
T ss_pred C-------CCChhHH--HHHHHHHHcCCCcceeeeeeecCCCCCCcccHHHHHHHHHHHHHHHHHHHccC---CCHHHHH
Confidence 1 1222221 2333444455 45666655543332 2232 33445555544332221111 3333443
Q ss_pred HHhhcCCc-eEEeeecccccccccccHHHHHHHhCCeEEecccCCCcc
Q 024050 171 RAHAVHPI-TAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGF 217 (273)
Q Consensus 171 ~~~~~~~~-~~~q~~~~l~~~~~~~~l~~~~~~~gi~v~a~spl~~G~ 217 (273)
..+...|- -.+-..=..+....-..+.++++++||+-+.+..+.+..
T Consensus 219 ~~ig~TpMiG~nD~~~e~ft~~da~~~~~fA~~~~l~~~s~Ws~~RD~ 266 (294)
T cd06543 219 AMIGVTPMIGVNDVGSEVFTLADAQTLVDFAKEKGLGRLSMWSLNRDR 266 (294)
T ss_pred HHccccccccccCCCCceeeHHHHHHHHHHHHhCCCCeEeeeeccCCC
Confidence 33443221 111111012222222779999999999999999987554
No 163
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=42.66 E-value=2.1e+02 Score=24.30 Aligned_cols=176 Identities=12% Similarity=0.043 Sum_probs=85.4
Q ss_pred CCHHHHHHHHHHHHHCCCCccccccCCCCCcHH-HHHHHHHhcCCCCCEEEEeccCcCCC----CCc-c---c-------
Q 024050 38 VSEEDGISMIKHAFSKGITFFDTADVYGQNANE-VLLGKALKQLPREKIQVATKFGIAGI----GVA-G---V------- 101 (273)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~se-~~lg~~l~~~~r~~~~i~tK~~~~~~----~~~-~---~------- 101 (273)
.+.++..++++.-.+.||..|+..... .+..+ +.+.+..+..++..+..-.......- ..+ . .
T Consensus 17 ~~~~~k~~i~~~L~~~Gv~~iE~g~p~-~~~~~~e~~~~l~~~~~~~~~~~~~r~~~~~v~~a~~~g~~~i~i~~~~s~~ 95 (259)
T cd07939 17 FSREEKLAIARALDEAGVDEIEVGIPA-MGEEEREAIRAIVALGLPARLIVWCRAVKEDIEAALRCGVTAVHISIPVSDI 95 (259)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCC-CCHHHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHhCCcCEEEEEEecCHH
Confidence 478999999999999999999997332 23444 44444433222222211111100000 000 0 0
Q ss_pred ----cccCCHHHHHHHHHHHHHH---cCCCcccEEEecCCCCC-CCHHHHHHHHHHHHHcCCccEEecCC----CCHHHH
Q 024050 102 ----IVKGAPDYVRSCCEASLKR---LDVDYIDLYYQHRVDTS-VPIEETIGEMKKLVEEGKIKYIGLSE----ASPGTI 169 (273)
Q Consensus 102 ----~~~~~~~~i~~~~~~sL~~---L~~d~iDl~~lh~~~~~-~~~~~~~~~L~~l~~~G~ir~iGvS~----~~~~~l 169 (273)
....+++.+.+.+.+..+. .|. ++. +..++.. .+.+...+..+++.+.| +..|.++. ..|+++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~i~~a~~~G~-~v~---~~~~~~~~~~~~~~~~~~~~~~~~G-~~~i~l~DT~G~~~P~~v 170 (259)
T cd07939 96 HLAHKLGKDRAWVLDQLRRLVGRAKDRGL-FVS---VGAEDASRADPDFLIEFAEVAQEAG-ADRLRFADTVGILDPFTT 170 (259)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHCCC-eEE---EeeccCCCCCHHHHHHHHHHHHHCC-CCEEEeCCCCCCCCHHHH
Confidence 0011223333333333332 342 222 2333222 44566677777777777 56677765 456665
Q ss_pred HHHhhcC--CceEEeeeccccccccc-ccHHHHHHHhCCeEEecccCCCccCCC
Q 024050 170 RRAHAVH--PITAVQMEWSLWTRDIE-EEIIPLCRELGIGIVPYSPLGRGFFGG 220 (273)
Q Consensus 170 ~~~~~~~--~~~~~q~~~~l~~~~~~-~~l~~~~~~~gi~v~a~spl~~G~L~~ 220 (273)
.+++... .+. +.+.+|.-+..-. ..-.-.|-+.|+..+--+-.+.|--+|
T Consensus 171 ~~lv~~l~~~~~-~~l~~H~Hn~~Gla~An~laAi~aG~~~vd~s~~G~G~~aG 223 (259)
T cd07939 171 YELIRRLRAATD-LPLEFHAHNDLGLATANTLAAVRAGATHVSVTVNGLGERAG 223 (259)
T ss_pred HHHHHHHHHhcC-CeEEEEecCCCChHHHHHHHHHHhCCCEEEEeccccccccc
Confidence 5554431 111 3445554443211 112233447899888877777775554
No 164
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=42.47 E-value=2.5e+02 Score=24.98 Aligned_cols=94 Identities=15% Similarity=0.125 Sum_probs=47.6
Q ss_pred CCCEEEEeccCcCCCCCccccccCCHHHHHHHHHHHHHHcCCCcccEEEecCCCC--C--CCH--HHHHHHHHHHHHcCC
Q 024050 82 REKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDT--S--VPI--EETIGEMKKLVEEGK 155 (273)
Q Consensus 82 r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~--~--~~~--~~~~~~L~~l~~~G~ 155 (273)
.+++.|..|+........ ..+.+... .+-+.|+..|+|+|+ +|.... . .+. ...++.+.++++.=.
T Consensus 219 G~d~~v~vri~~~~~~~~----g~~~~e~~-~ia~~Le~~gvd~ie---v~~g~~~~~~~~~~~~~~~~~~~~~ir~~~~ 290 (336)
T cd02932 219 PEDKPLFVRISATDWVEG----GWDLEDSV-ELAKALKELGVDLID---VSSGGNSPAQKIPVGPGYQVPFAERIRQEAG 290 (336)
T ss_pred CCCceEEEEEcccccCCC----CCCHHHHH-HHHHHHHHcCCCEEE---ECCCCCCcccccCCCccccHHHHHHHHhhCC
Confidence 446778888765321111 12333332 233445666765555 332110 0 011 122355566666556
Q ss_pred ccEEecCCC-CHHHHHHHhhcCCceEEee
Q 024050 156 IKYIGLSEA-SPGTIRRAHAVHPITAVQM 183 (273)
Q Consensus 156 ir~iGvS~~-~~~~l~~~~~~~~~~~~q~ 183 (273)
+-=++..+. +++..+++++....+.+++
T Consensus 291 iPVi~~G~i~t~~~a~~~l~~g~aD~V~~ 319 (336)
T cd02932 291 IPVIAVGLITDPEQAEAILESGRADLVAL 319 (336)
T ss_pred CCEEEeCCCCCHHHHHHHHHcCCCCeehh
Confidence 666666664 6777777777665665554
No 165
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=42.29 E-value=35 Score=27.90 Aligned_cols=67 Identities=18% Similarity=0.227 Sum_probs=41.2
Q ss_pred HHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEecC-CCCHHHHHHHhhcCCceEEeeeccc
Q 024050 117 SLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS-EASPGTIRRAHAVHPITAVQMEWSL 187 (273)
Q Consensus 117 sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~q~~~~l 187 (273)
.+..+|.||+-+.+. |.....+ ..+...++.+.-..+.+||. |-+++.+.+..+...++++|++-+.
T Consensus 14 ~~~~~g~d~~Gfi~~--~~S~R~v--~~~~a~~l~~~~~~~~VgVf~~~~~~~I~~~~~~~~ld~vQLHG~e 81 (197)
T PF00697_consen 14 LAAELGADYLGFIFY--PKSPRYV--SPDQARELVSAVPPKIVGVFVNQSPEEILEIVEELGLDVVQLHGDE 81 (197)
T ss_dssp HHHHHTSSEEEEE----TTCTTB----HHHHHHHHCCSSSSEEEEESSS-HHHHHHHHHHCTESEEEE-SGG
T ss_pred HHHHcCCCEEeeecC--CCCCCcc--CHHHHHHHHHhcCCCEEEEEcCCCHHHHHHHHHHcCCCEEEECCCC
Confidence 456689999988643 4322211 23344455544444478986 4577888888888999999986655
No 166
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=42.19 E-value=1.2e+02 Score=27.93 Aligned_cols=82 Identities=9% Similarity=0.038 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHcCCccEEecCCCCHHHHHHHhh--cCCceEEeeeccccccccc-ccHHHHHHHhCCeEEecccCCCc
Q 024050 140 IEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHA--VHPITAVQMEWSLWTRDIE-EEIIPLCRELGIGIVPYSPLGRG 216 (273)
Q Consensus 140 ~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~--~~~~~~~q~~~~l~~~~~~-~~l~~~~~~~gi~v~a~spl~~G 216 (273)
...++..++++.++.-|....+-..+.+.+.+++. ..++.++..+-|+..+-.. ..+.+.|+++|+.++.=+.|+.+
T Consensus 112 YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfatP 191 (396)
T COG0626 112 YGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFATP 191 (396)
T ss_pred cchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcccCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCcccc
Confidence 56788888888888888877777766655555553 5788899999998876543 78999999999999999999988
Q ss_pred cCCCC
Q 024050 217 FFGGK 221 (273)
Q Consensus 217 ~L~~~ 221 (273)
++..+
T Consensus 192 ~~q~P 196 (396)
T COG0626 192 VLQRP 196 (396)
T ss_pred cccCh
Confidence 88765
No 167
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=42.03 E-value=78 Score=26.21 Aligned_cols=86 Identities=16% Similarity=0.230 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEecCC-CCHHHHHHHhhcC-CceEEeee
Q 024050 107 PDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE-ASPGTIRRAHAVH-PITAVQME 184 (273)
Q Consensus 107 ~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~-~~~~~l~~~~~~~-~~~~~q~~ 184 (273)
++...+ +-+.|-.-|++-+.+=+ +. ...++.+++++++.-=-.||.-+ .++++.+++++.. .|.
T Consensus 19 ~e~a~~-~~~al~~~Gi~~iEit~-~t-------~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~Fi----- 84 (204)
T TIGR01182 19 VDDALP-LAKALIEGGLRVLEVTL-RT-------PVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFI----- 84 (204)
T ss_pred HHHHHH-HHHHHHHcCCCEEEEeC-CC-------ccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEE-----
Confidence 444433 34455556655554433 11 33555666666554334688877 5788888888873 332
Q ss_pred cccccccccccHHHHHHHhCCeEEe
Q 024050 185 WSLWTRDIEEEIIPLCRELGIGIVP 209 (273)
Q Consensus 185 ~~l~~~~~~~~l~~~~~~~gi~v~a 209 (273)
..+....+++++|+++||.++.
T Consensus 85 ---vsP~~~~~v~~~~~~~~i~~iP 106 (204)
T TIGR01182 85 ---VSPGLTPELAKHAQDHGIPIIP 106 (204)
T ss_pred ---ECCCCCHHHHHHHHHcCCcEEC
Confidence 1222236899999999997775
No 168
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=41.98 E-value=1.7e+02 Score=23.90 Aligned_cols=98 Identities=17% Similarity=0.196 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHcCCCcccEEEecCCC--CCCCHHHHHHHHHHHHHcCCccEEecCCCCHH--HHHHHhhcCCceEEeee
Q 024050 109 YVRSCCEASLKRLDVDYIDLYYQHRVD--TSVPIEETIGEMKKLVEEGKIKYIGLSEASPG--TIRRAHAVHPITAVQME 184 (273)
Q Consensus 109 ~i~~~~~~sL~~L~~d~iDl~~lh~~~--~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~--~l~~~~~~~~~~~~q~~ 184 (273)
.+...+...+++.+..- +-+.+--.+ .........+.+..|++.|- .+.+.++... .+.. +...+++.+-+.
T Consensus 100 ~~~~~l~~~l~~~~~~~-~~lvlei~e~~~~~~~~~~~~~i~~l~~~G~--~ialddfg~~~~~~~~-l~~l~~d~iKld 175 (241)
T smart00052 100 DLVPRVLELLEETGLPP-QRLELEITESVLLDDDESAVATLQRLRELGV--RIALDDFGTGYSSLSY-LKRLPVDLLKID 175 (241)
T ss_pred hHHHHHHHHHHHcCCCH-HHEEEEEeChhhhcChHHHHHHHHHHHHCCC--EEEEeCCCCcHHHHHH-HHhCCCCeEEEC
Confidence 35566777777766542 222222222 11233445588999999997 4777776542 2333 333456777666
Q ss_pred ccccccc--------ccccHHHHHHHhCCeEEec
Q 024050 185 WSLWTRD--------IEEEIIPLCRELGIGIVPY 210 (273)
Q Consensus 185 ~~l~~~~--------~~~~l~~~~~~~gi~v~a~ 210 (273)
-++...- .-..++..|+..|+.|++-
T Consensus 176 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~ 209 (241)
T smart00052 176 KSFVRDLQTDPEDEAIVQSIIELAQKLGLQVVAE 209 (241)
T ss_pred HHHHhhhccChhHHHHHHHHHHHHHHCCCeEEEe
Confidence 5554321 1266789999999999984
No 169
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=41.82 E-value=2.7e+02 Score=25.84 Aligned_cols=95 Identities=11% Similarity=0.088 Sum_probs=59.8
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcC--CccEEecCC-C-CHHHHHHHhhcCCceEE
Q 024050 106 APDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEG--KIKYIGLSE-A-SPGTIRRAHAVHPITAV 181 (273)
Q Consensus 106 ~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G--~ir~iGvS~-~-~~~~l~~~~~~~~~~~~ 181 (273)
+++...+-+++.++. .++.++..|-.. +-++.+.+|.+.- .+.=.|=-. . ++..++++++....+++
T Consensus 263 s~~eai~~~~~lle~-----~~i~~iEdPl~~----~D~~~~~~L~~~~~~~ipI~gDE~~~t~~~~~~~~i~~~a~d~v 333 (425)
T TIGR01060 263 TSEEMIEYYKELVEK-----YPIVSIEDGLSE----EDWEGWAELTKELGDKVQIVGDDLFVTNTEILREGIEMGVANSI 333 (425)
T ss_pred CHHHHHHHHHHHHhc-----CCcEEEEcCCCc----ccHHHHHHHHHhcCCCCeEEeCCCcccCHHHHHHHHHhCCCCEE
Confidence 444544444444443 356777776442 3466666776654 444333222 2 58889999888778888
Q ss_pred eeeccccccccc-ccHHHHHHHhCCeEEe
Q 024050 182 QMEWSLWTRDIE-EEIIPLCRELGIGIVP 209 (273)
Q Consensus 182 q~~~~l~~~~~~-~~l~~~~~~~gi~v~a 209 (273)
|+..+-.---.+ .++.+.|+.+|+.++.
T Consensus 334 ~ik~~~iGGItea~~ia~lA~~~Gi~~vv 362 (425)
T TIGR01060 334 LIKPNQIGTLTETLDAVELAKKAGYTAVI 362 (425)
T ss_pred EecccccCCHHHHHHHHHHHHHcCCcEEE
Confidence 887776543212 6788999999998664
No 170
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=41.78 E-value=2.6e+02 Score=25.13 Aligned_cols=93 Identities=15% Similarity=0.202 Sum_probs=58.1
Q ss_pred CCCEEEEeccCcCCC------CCccccccCCHHHHHHHHHHHHHHcCCCcccEEEecCC-CCCCCHHHHHHHHHHHHHc-
Q 024050 82 REKIQVATKFGIAGI------GVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRV-DTSVPIEETIGEMKKLVEE- 153 (273)
Q Consensus 82 r~~~~i~tK~~~~~~------~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~-~~~~~~~~~~~~L~~l~~~- 153 (273)
|..++|+|-++.... +..+.....+++.|..++....+.++ ..++-+.+-.. ++....+.+.+++..+.+.
T Consensus 100 r~t~cvSsqvGC~~~C~FC~tg~~g~~rnlt~~EIv~qv~~~~~~~~-~~~~~IvfmGmGEPlln~~~v~~~i~~l~~~~ 178 (345)
T PRK14457 100 RLTVCVSSQVGCPMACDFCATGKGGLKRSLKAHEIVDQVLTVQEDMQ-RRVSHVVFMGMGEPLLNIDEVLAAIRCLNQDL 178 (345)
T ss_pred CCEEEEeCCCCCCCcCCcCCCCCCCCccccCHHHHHHHHHHHHHHhc-CCCCEEEEEecCccccCHHHHHHHHHHHhccc
Confidence 666778877665431 11123345789999999998887775 34665555553 3334567788998888875
Q ss_pred CC-ccEEecCCCC-HHHHHHHhhc
Q 024050 154 GK-IKYIGLSEAS-PGTIRRAHAV 175 (273)
Q Consensus 154 G~-ir~iGvS~~~-~~~l~~~~~~ 175 (273)
|. .|.|-+|+.. ++.++++.+.
T Consensus 179 ~i~~r~itvST~G~~~~i~~L~~~ 202 (345)
T PRK14457 179 GIGQRRITVSTVGVPKTIPQLAEL 202 (345)
T ss_pred CCccCceEEECCCchhhHHHHHhh
Confidence 43 3566666642 3456665543
No 171
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=41.66 E-value=2.4e+02 Score=26.33 Aligned_cols=92 Identities=14% Similarity=0.046 Sum_probs=54.9
Q ss_pred HHHHHHHHcCCCcccEEEecCCC--------CCCCHHHHHHHHHHHHHcCCccE----EecCCCCHHHHHHHhhc---CC
Q 024050 113 CCEASLKRLDVDYIDLYYQHRVD--------TSVPIEETIGEMKKLVEEGKIKY----IGLSEASPGTIRRAHAV---HP 177 (273)
Q Consensus 113 ~~~~sL~~L~~d~iDl~~lh~~~--------~~~~~~~~~~~L~~l~~~G~ir~----iGvS~~~~~~l~~~~~~---~~ 177 (273)
.+-+.|++.|+.++-+= +...+ .....++..++++.+++.|.--. +|+-+.+.+.+++.++. ..
T Consensus 288 e~l~~l~~aG~~~v~iG-iES~s~~~L~~~~K~~~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e~~~~ti~~~~~l~ 366 (472)
T TIGR03471 288 ETLKVMKENGLRLLLVG-YESGDQQILKNIKKGLTVEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRKTIDFAKELN 366 (472)
T ss_pred HHHHHHHHcCCCEEEEc-CCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHHHHHHHHHHHHhcC
Confidence 34455666776654422 22222 12345678888999999987433 26666777776665544 23
Q ss_pred ceEEeeecccccccccccHHHHHHHhCCeE
Q 024050 178 ITAVQMEWSLWTRDIEEEIIPLCRELGIGI 207 (273)
Q Consensus 178 ~~~~q~~~~l~~~~~~~~l~~~~~~~gi~v 207 (273)
++. +.++++.+-+...+.+.++++|+-.
T Consensus 367 ~~~--~~~~~l~P~PGT~l~~~~~~~g~~~ 394 (472)
T TIGR03471 367 PHT--IQVSLAAPYPGTELYDQAKQNGWIT 394 (472)
T ss_pred CCc--eeeeecccCCCcHHHHHHHHCCCcC
Confidence 333 3455565555578888888877643
No 172
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=41.32 E-value=64 Score=27.74 Aligned_cols=100 Identities=18% Similarity=0.200 Sum_probs=55.9
Q ss_pred cCCHHHHHHHHHHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCC-ccEEecCCCCHHHHHHHhhcCCceEEe
Q 024050 104 KGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGK-IKYIGLSEASPGTIRRAHAVHPITAVQ 182 (273)
Q Consensus 104 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~-ir~iGvS~~~~~~l~~~~~~~~~~~~q 182 (273)
.++.+...+ +-+.|.++|++.|.+-. |... .+.+++.+.+.+.++ .+-.+....+.+.++.+.+.. ++.+-
T Consensus 18 ~~s~~~k~~-i~~~L~~~Gv~~IEvG~---P~~~---~~~~~~~~~l~~~~~~~~v~~~~r~~~~di~~a~~~g-~~~i~ 89 (262)
T cd07948 18 FFDTEDKIE-IAKALDAFGVDYIELTS---PAAS---PQSRADCEAIAKLGLKAKILTHIRCHMDDARIAVETG-VDGVD 89 (262)
T ss_pred CCCHHHHHH-HHHHHHHcCCCEEEEEC---CCCC---HHHHHHHHHHHhCCCCCcEEEEecCCHHHHHHHHHcC-cCEEE
Confidence 345554444 44559999988888874 4332 333444455544443 333555667778888888763 22232
Q ss_pred eeccc--------ccccc------cccHHHHHHHhCCeEEecc
Q 024050 183 MEWSL--------WTRDI------EEEIIPLCRELGIGIVPYS 211 (273)
Q Consensus 183 ~~~~l--------~~~~~------~~~l~~~~~~~gi~v~a~s 211 (273)
+.++. +.+.. -.+++++++++|+.|...-
T Consensus 90 i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~ 132 (262)
T cd07948 90 LVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSS 132 (262)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 32211 11111 1556788889998776653
No 173
>PF01904 DUF72: Protein of unknown function DUF72; InterPro: IPR002763 The function of this family is unknown. Aquifex aeolicus has two copies of this protein. A probable aspartyl-tRNA synthetase from Escherichia coli [] belongs to this group.; PDB: 1VPY_A 1ZTV_A 1VPQ_A.
Probab=41.20 E-value=2.1e+02 Score=23.89 Aligned_cols=129 Identities=13% Similarity=0.114 Sum_probs=66.8
Q ss_pred CCcccc-ccCCCCCcHHHHHHHHHhcCCCCCEEEEeccCcCCCCCccccccCCHHHHHHHHHHHHHHcCCCcccEEEecC
Q 024050 55 ITFFDT-ADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHR 133 (273)
Q Consensus 55 in~~Dt-A~~Yg~g~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~ 133 (273)
+|.+.. +..|.. .+++.+.+|.++ -++++..+-|+........ ......+.+.+.+-+.++-|+ +.+..+++.-
T Consensus 19 F~~VEvn~TFY~~-P~~~t~~~W~~~-~p~~F~F~vK~~~~iTH~~--~l~~~~~~~~~~F~~~~~~L~-~klg~iL~Q~ 93 (230)
T PF01904_consen 19 FNTVEVNSTFYRI-PSPETVARWREQ-TPEGFRFSVKAPQLITHER--RLRDCAEELWRRFLEALEPLG-EKLGPILFQF 93 (230)
T ss_dssp -SEEEE-HHCCSS-S-HHHHHHHHCT-S-TT-EEEEE--CCCCCCC--HCGSSHHHHHHHHHHHCHHHH-T-EEEEEEE-
T ss_pred CCeEEECcccCCC-CCHHHHHHHHhh-CCCCeEEEEeccHHheecc--cccccHHHHHHHHHHHHHHHh-hcceEEEEEc
Confidence 444333 446765 377789989884 4578999999876552100 111235666466666999998 9999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCccEEecCCCCHHHHHHHhhcCCceEEeeecccccccccccHHHHHHHhCCeEEec
Q 024050 134 VDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPY 210 (273)
Q Consensus 134 ~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~~l~~~~~~~~l~~~~~~~gi~v~a~ 210 (273)
|..-..-.+.++.|..+.+.=. ..-...+.+.---+. ..++++.++++|+..+.-
T Consensus 94 Ppsf~~~~~~~~~l~~~l~~~~-------------------~~~~~avE~R~~sW~---~~~~~~~l~~~~~~~v~~ 148 (230)
T PF01904_consen 94 PPSFRFTPENLERLDAFLDRLP-------------------RGFRYAVEFRHPSWF---TEEVFELLREHGVALVIA 148 (230)
T ss_dssp -TT--S-HHHHHHHHHHHHHTT--------------------TS-EEEE--BGGGG---CHHHHHHHHHTT-EEEEE
T ss_pred CCCcCCCHHHHHHHHHHHhhcc-------------------cccceEEecCCcchh---hHHHHHHHHHcCCEEEEe
Confidence 8753344455555544433321 011223333221111 266888888888887743
No 174
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=40.98 E-value=2.8e+02 Score=25.17 Aligned_cols=86 Identities=15% Similarity=0.154 Sum_probs=53.0
Q ss_pred cEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEecCCCCHHHHHHHhhc-CCceEEeeeccccccccc-ccHHHHHHHhC
Q 024050 127 DLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAV-HPITAVQMEWSLWTRDIE-EEIIPLCRELG 204 (273)
Q Consensus 127 Dl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~-~~~~~~q~~~~l~~~~~~-~~l~~~~~~~g 204 (273)
|-+.+-.|.. ...+..+..+...+.++-.-+...+.+.++++++. .++.++..+.|+.-.... ..+.+.|+++|
T Consensus 91 D~Vl~~~p~y----~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~ai~~~tklV~l~~p~NPtG~~~dl~~I~~la~~~g 166 (382)
T TIGR02080 91 DLLVAPHDCY----GGTYRLLNALAKKGCFRVLFVDQGDEQALRAALAQKPKLVLIETPSNPLLRVVDIAKICHLAKAVG 166 (382)
T ss_pred CEEEEcCCCc----HHHHHHHHHHHhhcCeEEEEECCCCHHHHHHhcCcCceEEEEECCCCCCCEecCHHHHHHHHHHcC
Confidence 5555554432 34555555655555555555555677888887743 455666667676544322 67889999999
Q ss_pred CeEEecccCCCc
Q 024050 205 IGIVPYSPLGRG 216 (273)
Q Consensus 205 i~v~a~spl~~G 216 (273)
+-++.=..++.+
T Consensus 167 ~~vvvD~a~~~~ 178 (382)
T TIGR02080 167 AVVVVDNTFLSP 178 (382)
T ss_pred CEEEEECCCccc
Confidence 888865555434
No 175
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=40.93 E-value=2.9e+02 Score=25.37 Aligned_cols=70 Identities=16% Similarity=0.171 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHCCCCccccccCCCCCcHHHHHHHHHhc--CCCCCEEEEeccCcCCCCCccccccCCHHHHHHHHHHH
Q 024050 40 EEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ--LPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEAS 117 (273)
Q Consensus 40 ~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~se~~lg~~l~~--~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~s 117 (273)
-.++.+-=-+|+|.|+-.+-||..- +-..+ ++-. ..-+.|+=++++... -...+.-+
T Consensus 63 T~~vlE~RiAaLEGG~aa~a~aSG~----AA~~~--ai~~la~aGD~iVss~~LYGG---------------T~~lf~~t 121 (426)
T COG2873 63 TTDVLEERIAALEGGVAALAVASGQ----AAITY--AILNLAGAGDNIVSSSKLYGG---------------TYNLFSHT 121 (426)
T ss_pred hHHHHHHHHHHhhcchhhhhhccch----HHHHH--HHHHhccCCCeeEeeccccCc---------------hHHHHHHH
Confidence 4555666668899999888777532 22222 2222 466777777776432 24678889
Q ss_pred HHHcCCCcccEEEecC
Q 024050 118 LKRLDVDYIDLYYQHR 133 (273)
Q Consensus 118 L~~L~~d~iDl~~lh~ 133 (273)
|+++|+ ++-++..
T Consensus 122 l~~~Gi---~v~fvd~ 134 (426)
T COG2873 122 LKRLGI---EVRFVDP 134 (426)
T ss_pred HHhcCc---EEEEeCC
Confidence 999994 5555443
No 176
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=40.24 E-value=2.4e+02 Score=24.66 Aligned_cols=97 Identities=20% Similarity=0.240 Sum_probs=61.5
Q ss_pred HHHcCCCcccEEEecCCCCCCCHHHH-----HHHHHHHHHcCCccEEecCCCCHH-------HHHHHhhcCCceEEeeec
Q 024050 118 LKRLDVDYIDLYYQHRVDTSVPIEET-----IGEMKKLVEEGKIKYIGLSEASPG-------TIRRAHAVHPITAVQMEW 185 (273)
Q Consensus 118 L~~L~~d~iDl~~lh~~~~~~~~~~~-----~~~L~~l~~~G~ir~iGvS~~~~~-------~l~~~~~~~~~~~~q~~~ 185 (273)
++-++-.++|+..+..+.......+. -+.+.++.++--=|++|+.+.++. .+++......++-+|+.-
T Consensus 55 ~~~~~~~~i~~~~~~~~~~~~~~~d~~~~~~nd~~a~~~~~~pdrf~~~~~v~p~~~~~a~~E~er~v~~~gf~g~~l~p 134 (293)
T COG2159 55 LAFMDAAGIDLFVLSGMGEVAIIPDLRRALANDDLAALAAEYPDRFVGFARVDPRDPEAAAEELERRVRELGFVGVKLHP 134 (293)
T ss_pred HhhhcccccceEEeeccccccchHHHhhhhhhHHHHHHHhhCCcceeeeeeeCCCchHHHHHHHHHHHHhcCceEEEecc
Confidence 77788889999998841111222222 257888888888899999987664 345555544555555522
Q ss_pred ccccc---ccc-ccHHHHHHHhCCeEEecccCC
Q 024050 186 SLWTR---DIE-EEIIPLCRELGIGIVPYSPLG 214 (273)
Q Consensus 186 ~l~~~---~~~-~~l~~~~~~~gi~v~a~spl~ 214 (273)
-.... +.. ..+++.|.++|+.|+-+....
T Consensus 135 ~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~ 167 (293)
T COG2159 135 VAQGFYPDDPRLYPIYEAAEELGVPVVIHTGAG 167 (293)
T ss_pred cccCCCCCChHHHHHHHHHHHcCCCEEEEeCCC
Confidence 21111 111 569999999999999865444
No 177
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=40.09 E-value=2.8e+02 Score=24.86 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=15.9
Q ss_pred CCHHHHHHHH-------HHHHHCCCCcccccc
Q 024050 38 VSEEDGISMI-------KHAFSKGITFFDTAD 62 (273)
Q Consensus 38 ~~~~~~~~~l-------~~A~~~Gin~~DtA~ 62 (273)
++.+|..+++ +.|.++|+..+|.-.
T Consensus 131 mt~~eI~~ii~~f~~AA~ra~~aGfDgVeih~ 162 (343)
T cd04734 131 MEEEDIEEIIAAFADAARRCQAGGLDGVELQA 162 (343)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcc
Confidence 5566555544 456678998876544
No 178
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=39.98 E-value=2.8e+02 Score=25.00 Aligned_cols=91 Identities=18% Similarity=0.254 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCC-ccEEecCCCCHHHHHHHhhcCCceEEeeeccccc
Q 024050 111 RSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGK-IKYIGLSEASPGTIRRAHAVHPITAVQMEWSLWT 189 (273)
Q Consensus 111 ~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~-ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~~l~~ 189 (273)
+..+-+.|.++|+++|++- ....-+.-++.+..+.+.+. .+..+++....+.++.+.+. .++.+.+..+.-+
T Consensus 25 k~~ia~~L~~~Gv~~IEvG------~p~~~~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~-g~~~i~i~~~~Sd 97 (365)
T TIGR02660 25 KLAIARALDEAGVDELEVG------IPAMGEEERAVIRAIVALGLPARLMAWCRARDADIEAAARC-GVDAVHISIPVSD 97 (365)
T ss_pred HHHHHHHHHHcCCCEEEEe------CCCCCHHHHHHHHHHHHcCCCcEEEEEcCCCHHHHHHHHcC-CcCEEEEEEccCH
Q ss_pred ccccc--------------cHHHHHHHhCCeEE
Q 024050 190 RDIEE--------------EIIPLCRELGIGIV 208 (273)
Q Consensus 190 ~~~~~--------------~l~~~~~~~gi~v~ 208 (273)
..... +.+++++++|+.|.
T Consensus 98 ~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~ 130 (365)
T TIGR02660 98 LQIEAKLRKDRAWVLERLARLVSFARDRGLFVS 130 (365)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEE
No 179
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=39.71 E-value=2.8e+02 Score=24.92 Aligned_cols=90 Identities=14% Similarity=0.166 Sum_probs=57.0
Q ss_pred EEEecCCCCC-----------CCHHHHHHHHHHHHHc-CC---ccEEecCC--CCHHHHHHHh---hcCCceEEeeeccc
Q 024050 128 LYYQHRVDTS-----------VPIEETIGEMKKLVEE-GK---IKYIGLSE--ASPGTIRRAH---AVHPITAVQMEWSL 187 (273)
Q Consensus 128 l~~lh~~~~~-----------~~~~~~~~~L~~l~~~-G~---ir~iGvS~--~~~~~l~~~~---~~~~~~~~q~~~~l 187 (273)
.+.||.|+.. .+++++++++.++.++ |+ ++++=+.+ .+.+.++++. +..+..++-++||.
T Consensus 215 aiSLhA~~~e~R~~l~Pi~~~~~le~ll~al~~~~~~~~r~v~ieyvLI~GvNDs~eda~~L~~ll~~l~~kVnLIPyN~ 294 (342)
T PRK14465 215 AISLNHPDPNGRLQIMDIEEKFPLEELLQAAKDFTRELKRRITFEYVMIPGVNMGRENANKLVKIARSLDCKINVIPLNT 294 (342)
T ss_pred EEEecCCChhhcceEeeccccCCHHHHHHHHHHHHHHcCCEEEEEEEEECCccCCHHHHHHHHHHHhhCCCcEEEEccCC
Confidence 4788998753 3467889999877644 33 33554433 4555555444 43456788889997
Q ss_pred cccc---cc----ccHHHHHHHhCCeEEecccCCCcc
Q 024050 188 WTRD---IE----EEIIPLCRELGIGIVPYSPLGRGF 217 (273)
Q Consensus 188 ~~~~---~~----~~l~~~~~~~gi~v~a~spl~~G~ 217 (273)
.... +. ....+..+++||.+..+...+.-+
T Consensus 295 ~~~~~~~ps~e~i~~F~~~L~~~Gi~v~~R~~~G~di 331 (342)
T PRK14465 295 EFFGWRRPTDDEVAEFIMLLEPAGVPILNRRSPGKDI 331 (342)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCcCh
Confidence 4321 11 446666778899999988877543
No 180
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=39.70 E-value=3e+02 Score=25.52 Aligned_cols=122 Identities=16% Similarity=0.100 Sum_probs=71.5
Q ss_pred CCHHHHHHHHHHHHHC-CCCccccccCCCCCcHHHHH---HHHHhcCCCC-CEEEEeccCcCCCCCccccccCCHHHHHH
Q 024050 38 VSEEDGISMIKHAFSK-GITFFDTADVYGQNANEVLL---GKALKQLPRE-KIQVATKFGIAGIGVAGVIVKGAPDYVRS 112 (273)
Q Consensus 38 ~~~~~~~~~l~~A~~~-Gin~~DtA~~Yg~g~se~~l---g~~l~~~~r~-~~~i~tK~~~~~~~~~~~~~~~~~~~i~~ 112 (273)
.+.++..+++++.-+. +|+-+=-+..-..=.+...+ -+.|++++.= .+-|.|+..... +..|..
T Consensus 138 ls~eei~~~i~yI~~~p~I~~VlLSGGDPLll~d~~L~~iL~~L~~IphV~~IRI~TR~pvv~-----------P~RIT~ 206 (417)
T TIGR03820 138 PSKEQILEGIEYIRNTPQIRDVLLSGGDPLLLSDDYLDWILTELRAIPHVEVIRIGTRVPVVL-----------PQRITD 206 (417)
T ss_pred CCHHHHHHHHHHHHhcCCCCEEEEeCCccccCChHHHHHHHHHHhhcCCCceEEEeecccccc-----------ccccCH
Confidence 4678888999888775 88733333222111122222 2334434332 356788865433 344555
Q ss_pred HHHHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEec-------CCCCHHHHHHHhhc
Q 024050 113 CCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGL-------SEASPGTIRRAHAV 175 (273)
Q Consensus 113 ~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGv-------S~~~~~~l~~~~~~ 175 (273)
.+-+.|++.+ .-.+.+|.-.+.+-..++.++++.|++.|.. ++. -|.+++.+.++...
T Consensus 207 ell~~Lk~~~---~~~v~~h~nhp~Eit~~a~~Al~~L~~aGI~--l~nQsVLLkGVND~~~~l~~L~~~ 271 (417)
T TIGR03820 207 ELVAILKKHH---PVWLNTHFNHPREITASSKKALAKLADAGIP--LGNQSVLLAGVNDCPRIMKKLVHK 271 (417)
T ss_pred HHHHHHHhcC---CeEEEEeCCChHhChHHHHHHHHHHHHcCCE--EEeeceEECCcCCCHHHHHHHHHH
Confidence 6666666665 3445567554444467899999999999963 333 25677777776543
No 181
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=39.62 E-value=2.7e+02 Score=24.80 Aligned_cols=71 Identities=11% Similarity=0.097 Sum_probs=48.4
Q ss_pred HHHHHHHHHcCCcc-EEecCCCCHHHHHHHhhcCCceEEeeecccccccccccHHHHHHHhCCeEEecccCCCc
Q 024050 144 IGEMKKLVEEGKIK-YIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRG 216 (273)
Q Consensus 144 ~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~~l~~~~~~~~l~~~~~~~gi~v~a~spl~~G 216 (273)
++.+.+++++-.+. +.|=|-++.+.+.+++.....+++|+..+.+--- .++++.|+++||.++..+.+..+
T Consensus 173 ~~~la~Lr~~~~vPIA~DEs~~~~~d~~~l~~~~a~dvi~ik~~~~GGi--t~~lkiA~~~gi~v~v~s~~es~ 244 (327)
T PRK02901 173 VEELAELRRRVGVPIAADESIRRAEDPLRVARAGAADVAVLKVAPLGGV--RAALDIAEQIGLPVVVSSALDTS 244 (327)
T ss_pred HHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEEeCcchhCCH--HHHHHHHHHcCCcEEEeCCcccH
Confidence 55666666553332 2333446777778888777788888877765432 56788999999999987766555
No 182
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=39.39 E-value=2.9e+02 Score=24.89 Aligned_cols=136 Identities=13% Similarity=0.007 Sum_probs=75.6
Q ss_pred CCCEEEEeccCcCC------CCCccccccCCHHHHHHHHHHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHc-C
Q 024050 82 REKIQVATKFGIAG------IGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEE-G 154 (273)
Q Consensus 82 r~~~~i~tK~~~~~------~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~-G 154 (273)
|..+.|+|-+|... .+..+...+.+...|..++-..-+.++....-+++.-.-++....+.+.+++..+++. |
T Consensus 104 ~~t~CvSsQvGC~m~C~FC~tg~~g~~rnlta~EI~~qv~~~~~~~~~~~~niVFmGmGEPL~N~d~V~~~~~~l~~~~~ 183 (342)
T PRK14465 104 RKTICISSQIGCTLNCKFCATAKLEFQGNLKAHEIVDQVLQVEKIVGDRATNVVFMGMGEPMHNYFNVIRAASILHDPDA 183 (342)
T ss_pred ceEEEEEecCCCCCCCCCCcCCCCCccCCCCHHHHHHHHHHHHHhcCCCceEEEEEcCCcchhhHHHHHHHHHHHhChhh
Confidence 34567777666443 1222344567889999998876666664444444444344445567888888888765 2
Q ss_pred ---CccEEecCCCCH-HHHHHHhhcCCceEEeeecccccc-----------ccc-----ccHHHHHHHhCCeEEecccCC
Q 024050 155 ---KIKYIGLSEASP-GTIRRAHAVHPITAVQMEWSLWTR-----------DIE-----EEIIPLCRELGIGIVPYSPLG 214 (273)
Q Consensus 155 ---~ir~iGvS~~~~-~~l~~~~~~~~~~~~q~~~~l~~~-----------~~~-----~~l~~~~~~~gi~v~a~spl~ 214 (273)
.-|.|-||+... +.+.++.+......+.+..|.-+. ... ..+..++++.+-.|..--+|-
T Consensus 184 ~~~~~r~itvST~G~~~~i~~l~~~~~~~~LaiSLhA~~~e~R~~l~Pi~~~~~le~ll~al~~~~~~~~r~v~ieyvLI 263 (342)
T PRK14465 184 FNLGAKRITISTSGVVNGIRRFIENKEPYNFAISLNHPDPNGRLQIMDIEEKFPLEELLQAAKDFTRELKRRITFEYVMI 263 (342)
T ss_pred hcCCCCeEEEeCCCchHHHHHHHhhccCceEEEEecCCChhhcceEeeccccCCHHHHHHHHHHHHHHcCCEEEEEEEEE
Confidence 456888888654 556665543222233333332111 111 334445556676666555665
Q ss_pred Ccc
Q 024050 215 RGF 217 (273)
Q Consensus 215 ~G~ 217 (273)
.|+
T Consensus 264 ~Gv 266 (342)
T PRK14465 264 PGV 266 (342)
T ss_pred CCc
Confidence 553
No 183
>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.
Probab=39.38 E-value=3e+02 Score=25.15 Aligned_cols=123 Identities=13% Similarity=0.070 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHCCCCccccccCCCC--CcHHHHHHHHHhcCCCCCEEEEeccCcCCCCCccccccCCHHHHHHHHHHHH
Q 024050 41 EDGISMIKHAFSKGITFFDTADVYGQ--NANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASL 118 (273)
Q Consensus 41 ~~~~~~l~~A~~~Gin~~DtA~~Yg~--g~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL 118 (273)
++..++++.|++.|+.-|=+...|.+ ..++..+-+.++...+-+..|.+..-... ......+.+.++-+
T Consensus 167 ~~~~~l~~~al~~Ga~g~~~~~~y~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~--------~~e~~av~~~~~~a- 237 (415)
T cd01297 167 AKMRELLREALEAGALGISTGLAYAPRLYAGTAELVALARVAARYGGVYQTHVRYEG--------DSILEALDELLRLG- 237 (415)
T ss_pred HHHHHHHHHHHHCCCeEEEcccccCCcccCCHHHHHHHHHHHHHcCCEEEEEECccc--------ccHHHHHHHHHHHH-
Confidence 45567788889999876655545543 34666676666653344556666543221 01123334444333
Q ss_pred HHcCCCcccEEEecCCCCC----CCHHHHHHHHHHHHHcCCccEEecCCCC---HHHHHHHhhc
Q 024050 119 KRLDVDYIDLYYQHRVDTS----VPIEETIGEMKKLVEEGKIKYIGLSEAS---PGTIRRAHAV 175 (273)
Q Consensus 119 ~~L~~d~iDl~~lh~~~~~----~~~~~~~~~L~~l~~~G~ir~iGvS~~~---~~~l~~~~~~ 175 (273)
++.|. -+...|-.... ....++++.+++.+++|.--...++.+. ...+.++++.
T Consensus 238 ~~~g~---r~~i~H~ss~~~~~~~~~~~~l~~i~~a~~~G~~v~~e~~p~~~~~~~~~~~l~~~ 298 (415)
T cd01297 238 RETGR---PVHISHLKSAGAPNWGKIDRLLALIEAARAEGLQVTADVYPYGAGSEDDVRRIMAH 298 (415)
T ss_pred HHhCC---CEEEEEEecCCCcccchHHHHHHHHHHHHHhCCcEEEEeCCCCCCcHHHHHHHHcC
Confidence 23342 35555644322 3456778888888888853334444432 3344555544
No 184
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=39.33 E-value=3.2e+02 Score=25.34 Aligned_cols=111 Identities=16% Similarity=0.184 Sum_probs=57.6
Q ss_pred ccccCCCCCcHHHHHHHHHhc----CCCCCEEEEeccCcCCCCCccccccCCHHHHHHHHHHHHHHcCC-CcccEEEecC
Q 024050 59 DTADVYGQNANEVLLGKALKQ----LPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDV-DYIDLYYQHR 133 (273)
Q Consensus 59 DtA~~Yg~g~se~~lg~~l~~----~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~-d~iDl~~lh~ 133 (273)
+..-.|| .|+-|-+++++ .+.+-++|.|-+.... --+.++..+++.-++... ..+.++.++.
T Consensus 62 E~d~V~G---g~~~L~~ai~~~~~~~~p~~I~v~ttC~~~i----------iGdDi~~v~~~~~~~~~~~~~~~vi~v~t 128 (435)
T cd01974 62 EDAAVFG---GQNNLIDGLKNAYAVYKPDMIAVSTTCMAEV----------IGDDLNAFIKNAKNKGSIPADFPVPFANT 128 (435)
T ss_pred CCceEEC---cHHHHHHHHHHHHHhcCCCEEEEeCCchHhh----------hhccHHHHHHHHHHhccCCCCCeEEEecC
Confidence 3445566 46667777765 3445566777654322 123344444443334321 1478899988
Q ss_pred CCCCCC----HHHHHHHHHH-HHH-------cCCccEEe-cCC-CC-HHHHHHHhhcCCceEEe
Q 024050 134 VDTSVP----IEETIGEMKK-LVE-------EGKIKYIG-LSE-AS-PGTIRRAHAVHPITAVQ 182 (273)
Q Consensus 134 ~~~~~~----~~~~~~~L~~-l~~-------~G~ir~iG-vS~-~~-~~~l~~~~~~~~~~~~q 182 (273)
|..... .+.++++|-+ +.. .+.|.=|| ..+ .+ .+.|+++++...+.++.
T Consensus 129 pgf~gs~~~G~~~a~~al~~~l~~~~~~~~~~~~VNli~~~~~~~d~~~el~~lL~~~Gl~~~~ 192 (435)
T cd01974 129 PSFVGSHITGYDNMVKGILTHLTEGSGGAGKNGKLNIIPGFDTYAGNMREIKRLLELMGVDYTI 192 (435)
T ss_pred CCCccCHHHHHHHHHHHHHHHHhcccCCCCCCCeEEEECCCCCCcchHHHHHHHHHHcCCCEEE
Confidence 865433 2334444432 222 23455554 222 22 56788888775555543
No 185
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=39.28 E-value=1.7e+02 Score=27.61 Aligned_cols=101 Identities=9% Similarity=0.059 Sum_probs=53.7
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEecCCCCCC------CHHHHHHHHHHHHHcC-CccE---------EecCCCCHHH
Q 024050 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSV------PIEETIGEMKKLVEEG-KIKY---------IGLSEASPGT 168 (273)
Q Consensus 105 ~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~------~~~~~~~~L~~l~~~G-~ir~---------iGvS~~~~~~ 168 (273)
.+.+... .+-+.|.++|++.|++. ..... --++.|+.|..+++.. .++. +|..++..+.
T Consensus 22 ~~t~dkl-~Ia~~Ld~~Gv~~IE~~----ggatfd~~~~Fl~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~~dDv 96 (467)
T PRK14041 22 MRTEDML-PALEAFDRMGFYSMEVW----GGATFDVCVRFLNENPWERLKEIRKRLKNTKIQMLLRGQNLVGYRHYADDV 96 (467)
T ss_pred CCHHHHH-HHHHHHHHcCCCEEEec----CCccchhhhcccCCCHHHHHHHHHHhCCCCEEEEEeccccccCcccccchh
Confidence 4444443 45556888899999982 11100 0123577777776652 2333 3333344343
Q ss_pred HHHHhhc---CCceEEeeecccccccccccHHHHHHHhCCeEEec
Q 024050 169 IRRAHAV---HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPY 210 (273)
Q Consensus 169 l~~~~~~---~~~~~~q~~~~l~~~~~~~~l~~~~~~~gi~v~a~ 210 (273)
++..++. ..++.+.+-.++-+.+.-...+++++++|..+.+.
T Consensus 97 v~~fv~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~ 141 (467)
T PRK14041 97 VELFVKKVAEYGLDIIRIFDALNDIRNLEKSIEVAKKHGAHVQGA 141 (467)
T ss_pred hHHHHHHHHHCCcCEEEEEEeCCHHHHHHHHHHHHHHCCCEEEEE
Confidence 3333322 23555555555544332366789999999877643
No 186
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=39.16 E-value=72 Score=26.34 Aligned_cols=89 Identities=18% Similarity=0.205 Sum_probs=54.6
Q ss_pred HHcCCCcccEEEec-CCCCC-CCHHH----HHHHHHHHHH--cCCccEEecCCCCHHHHHHHhhcCCceEEeeecccccc
Q 024050 119 KRLDVDYIDLYYQH-RVDTS-VPIEE----TIGEMKKLVE--EGKIKYIGLSEASPGTIRRAHAVHPITAVQMEWSLWTR 190 (273)
Q Consensus 119 ~~L~~d~iDl~~lh-~~~~~-~~~~~----~~~~L~~l~~--~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~~l~~~ 190 (273)
..-|.|+||+-.-- +|... .+.++ ....++.+++ .+. -|.+-+++++.++++++. ...++-.-.+.- .
T Consensus 29 ~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~--plSIDT~~~~v~~~aL~~-g~~~ind~~~~~-~ 104 (210)
T PF00809_consen 29 VEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDV--PLSIDTFNPEVAEAALKA-GADIINDISGFE-D 104 (210)
T ss_dssp HHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTS--EEEEEESSHHHHHHHHHH-TSSEEEETTTTS-S
T ss_pred HHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCe--EEEEECCCHHHHHHHHHc-CcceEEeccccc-c
Confidence 34588999986432 33221 22233 4455555554 233 477788999999999988 333333222221 1
Q ss_pred cccccHHHHHHHhCCeEEecccC
Q 024050 191 DIEEEIIPLCRELGIGIVPYSPL 213 (273)
Q Consensus 191 ~~~~~l~~~~~~~gi~v~a~spl 213 (273)
..++++.++++|..++++..-
T Consensus 105 --~~~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 105 --DPEMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp --STTHHHHHHHHTSEEEEESES
T ss_pred --cchhhhhhhcCCCEEEEEecc
Confidence 267999999999999998554
No 187
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=38.82 E-value=1.1e+02 Score=27.93 Aligned_cols=82 Identities=12% Similarity=0.058 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHcCCccEEecCCCCHHHHHHHhhc-CCceEEeeeccccccccc-ccHHHHHHHhC-CeEEecccCCCc
Q 024050 140 IEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAV-HPITAVQMEWSLWTRDIE-EEIIPLCRELG-IGIVPYSPLGRG 216 (273)
Q Consensus 140 ~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~-~~~~~~q~~~~l~~~~~~-~~l~~~~~~~g-i~v~a~spl~~G 216 (273)
...+.+.++++...--|...=+...+.+.++++++. .+..++..+-|+...-.. ..+.+.|+++| +.++.=+.++.+
T Consensus 104 Y~~t~~~~~~~l~~~gv~v~~~d~~d~~~l~~~l~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~atp 183 (386)
T PF01053_consen 104 YGGTYRLLEELLPRFGVEVTFVDPTDLEALEAALRPNTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFATP 183 (386)
T ss_dssp SHHHHHHHHHCHHHTTSEEEEESTTSHHHHHHHHCTTEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTTHT
T ss_pred cCcchhhhhhhhcccCcEEEEeCchhHHHHHhhccccceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeeccccce
Confidence 466777777755555555444445577888887764 667788888888765433 78999999999 999998888877
Q ss_pred cCCCC
Q 024050 217 FFGGK 221 (273)
Q Consensus 217 ~L~~~ 221 (273)
++..+
T Consensus 184 ~~~~p 188 (386)
T PF01053_consen 184 YNQNP 188 (386)
T ss_dssp TTC-G
T ss_pred eeecc
Confidence 76654
No 188
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=38.56 E-value=1.1e+02 Score=24.09 Aligned_cols=72 Identities=17% Similarity=0.097 Sum_probs=46.2
Q ss_pred CHHHHHHHHHHHHHCCCCccccccCCCCCcHHHHHHHHHhcCCCCCEEEEec-cCcCCCCCccccccCCHHHHHHHHHHH
Q 024050 39 SEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATK-FGIAGIGVAGVIVKGAPDYVRSCCEAS 117 (273)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~se~~lg~~l~~~~r~~~~i~tK-~~~~~~~~~~~~~~~~~~~i~~~~~~s 117 (273)
.++...-++++|-+.||.+|=.|..|| .+-.-+-+.+. .. =++++.|. .+...+ ....+.+.+++-
T Consensus 12 T~~tle~a~erA~elgik~~vVAS~tG--~tA~k~lemve-g~-lkvVvVthh~Gf~e~---------g~~e~~~E~~~~ 78 (186)
T COG1751 12 TDETLEIAVERAKELGIKHIVVASSTG--YTALKALEMVE-GD-LKVVVVTHHAGFEEK---------GTQEMDEEVRKE 78 (186)
T ss_pred hHHHHHHHHHHHHhcCcceEEEEeccc--HHHHHHHHhcc-cC-ceEEEEEeecccccC---------CceecCHHHHHH
Confidence 455667778888899999999999998 34433333333 11 24555554 333322 234567788888
Q ss_pred HHHcCC
Q 024050 118 LKRLDV 123 (273)
Q Consensus 118 L~~L~~ 123 (273)
|+..|.
T Consensus 79 L~erGa 84 (186)
T COG1751 79 LKERGA 84 (186)
T ss_pred HHHcCc
Confidence 998884
No 189
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=38.41 E-value=99 Score=27.58 Aligned_cols=119 Identities=13% Similarity=0.138 Sum_probs=65.1
Q ss_pred CCHHHHHHHHHHHHHCCCCccccccCCC--CCcHHHHHHHHHhcCCCCCEEEEeccCcCCCCCccccccCCHHHHHHHHH
Q 024050 38 VSEEDGISMIKHAFSKGITFFDTADVYG--QNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCE 115 (273)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gin~~DtA~~Yg--~g~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (273)
.+.++...+++.+.+.|++=|=-+..-. ...-.++++ .+++..-.++-++|-.. ......
T Consensus 43 Ls~eei~~~~~~~~~~Gv~kvRlTGGEPllR~dl~eIi~-~l~~~~~~~islTTNG~-----------------~L~~~a 104 (322)
T COG2896 43 LSLEEIRRLVRAFAELGVEKVRLTGGEPLLRKDLDEIIA-RLARLGIRDLSLTTNGV-----------------LLARRA 104 (322)
T ss_pred CCHHHHHHHHHHHHHcCcceEEEeCCCchhhcCHHHHHH-HHhhcccceEEEecchh-----------------hHHHHH
Confidence 5789999999999999998665443221 011122222 12212235666666532 233444
Q ss_pred HHHHHcCCCcccEEEecCCCC--------CCCHHHHHHHHHHHHHcCCc----cEEecCCCCHHHHHHHhhc
Q 024050 116 ASLKRLDVDYIDLYYQHRVDT--------SVPIEETIGEMKKLVEEGKI----KYIGLSEASPGTIRRAHAV 175 (273)
Q Consensus 116 ~sL~~L~~d~iDl~~lh~~~~--------~~~~~~~~~~L~~l~~~G~i----r~iGvS~~~~~~l~~~~~~ 175 (273)
.-|+.-|++.|-+ .||..++ ...+..+++.+++.++.|.- ..+=+.+.+-+++..+++.
T Consensus 105 ~~Lk~AGl~rVNV-SLDsld~e~f~~IT~~~~~~~Vl~GI~~A~~~Gl~pVKlN~Vv~kgvNd~ei~~l~e~ 175 (322)
T COG2896 105 ADLKEAGLDRVNV-SLDSLDPEKFRKITGRDRLDRVLEGIDAAVEAGLTPVKLNTVLMKGVNDDEIEDLLEF 175 (322)
T ss_pred HHHHHcCCcEEEe-ecccCCHHHHHHHhCCCcHHHHHHHHHHHHHcCCCceEEEEEEecCCCHHHHHHHHHH
Confidence 5556666554432 3344433 22356788888888888863 3344444555555444443
No 190
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=38.31 E-value=2.5e+02 Score=23.95 Aligned_cols=180 Identities=12% Similarity=0.097 Sum_probs=87.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCccccccCCCCCcHHHHHHHHHhc-CCCCCEEEEeccCcCC------CC----Cccc--c-
Q 024050 37 PVSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ-LPREKIQVATKFGIAG------IG----VAGV--I- 102 (273)
Q Consensus 37 ~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~se~~lg~~l~~-~~r~~~~i~tK~~~~~------~~----~~~~--~- 102 (273)
..+.++..++++...+.||..|+...... +..+...-+.+++ .+...+...+...... .+ .... .
T Consensus 16 ~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~-~~~~~~~~~~l~~~~~~~~~~~l~r~~~~~v~~a~~~~~~~~~~~i~i~~ 94 (268)
T cd07940 16 SLTPEEKLEIARQLDELGVDVIEAGFPAA-SPGDFEAVKRIAREVLNAEICGLARAVKKDIDAAAEALKPAKVDRIHTFI 94 (268)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCC-CHHHHHHHHHHHHhCCCCEEEEEccCCHhhHHHHHHhCCCCCCCEEEEEe
Confidence 35789999999999999999999875431 1222222233332 2323332222111000 00 0000 0
Q ss_pred ----------ccCCHHHHHHHHHHHHHHcCCCcccEEEecCCCC-CCCHHHHHHHHHHHHHcCCccEEecCC----CCHH
Q 024050 103 ----------VKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDT-SVPIEETIGEMKKLVEEGKIKYIGLSE----ASPG 167 (273)
Q Consensus 103 ----------~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~-~~~~~~~~~~L~~l~~~G~ir~iGvS~----~~~~ 167 (273)
...+.+...+.+.+..+...-.-+.+. +..++. ..+.+...+..+++.+.| +..|.++. ..|+
T Consensus 95 ~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~-~~~~~~~~~~~~~~~~~~~~~~~~G-~~~i~l~DT~G~~~P~ 172 (268)
T cd07940 95 ATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVE-FSAEDATRTDLDFLIEVVEAAIEAG-ATTINIPDTVGYLTPE 172 (268)
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEE-EeeecCCCCCHHHHHHHHHHHHHcC-CCEEEECCCCCCCCHH
Confidence 011223223333333332221112222 333322 244566677777777777 67788876 3666
Q ss_pred HHHHHhhc----CCceEEeeecccccccc--cccHHHHHHHhCCeEEecccCCCccCCC
Q 024050 168 TIRRAHAV----HPITAVQMEWSLWTRDI--EEEIIPLCRELGIGIVPYSPLGRGFFGG 220 (273)
Q Consensus 168 ~l~~~~~~----~~~~~~q~~~~l~~~~~--~~~l~~~~~~~gi~v~a~spl~~G~L~~ 220 (273)
++.++++. .+-.-+.+.+|.-+..- ....+. |-+.|+.++--+-.+.|--+|
T Consensus 173 ~v~~lv~~l~~~~~~~~i~l~~H~Hn~~GlA~An~la-Ai~aG~~~iD~s~~GlG~~aG 230 (268)
T cd07940 173 EFGELIKKLKENVPNIKVPISVHCHNDLGLAVANSLA-AVEAGARQVECTINGIGERAG 230 (268)
T ss_pred HHHHHHHHHHHhCCCCceeEEEEecCCcchHHHHHHH-HHHhCCCEEEEEeeccccccc
Confidence 66655443 22101345555544321 122333 336799998777777765444
No 191
>PRK04390 rnpA ribonuclease P; Reviewed
Probab=37.96 E-value=1.7e+02 Score=21.82 Aligned_cols=64 Identities=13% Similarity=0.212 Sum_probs=40.2
Q ss_pred CCCCCEEEEeccCcCCCCCccccccCCHHHHHHHHHHHHHHcC--CCcccEEEecCCCCC-CCHHHHHHHHHHHHH
Q 024050 80 LPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLD--VDYIDLYYQHRVDTS-VPIEETIGEMKKLVE 152 (273)
Q Consensus 80 ~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~--~d~iDl~~lh~~~~~-~~~~~~~~~L~~l~~ 152 (273)
.+|=-+.|+-|++... ..+..|++.+++.+.... +...|++++..+... .+..+..+.|.+|.+
T Consensus 43 ~~R~G~~VsKK~~~~A---------V~RNRiKR~lRE~~R~~~~~l~~~DiVvi~r~~~~~~~~~~l~~~l~~ll~ 109 (120)
T PRK04390 43 HPRLGLVVGKKTAKRA---------VERNYMKRVIREWFRLNQHRLPPVDFVVRVQRKFDRATAKQAVAELAQLMA 109 (120)
T ss_pred CceEEEEEecccCcch---------hhhhHHHHHHHHHHHhccccCCCceEEEEeCCCcccCCHHHHHHHHHHHHH
Confidence 3454566777754322 347778888888876554 345799999988654 445566666655544
No 192
>cd00466 DHQase_II Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway and the catabolic quinate pathway. There are two types of DHQases, which are distinct from each other in amino acid sequence and three-dimensional structure. Type I enzymes usually catalyze the biosynthetic reaction using a syn elimination mechanism. In contrast, type II enzymes, found in the quinate pathway of fungi and in the shikimate pathway of many bacteria, are dodecameric enzymes that employ an anti elimination reaction mechanism.
Probab=37.80 E-value=1.3e+02 Score=23.30 Aligned_cols=81 Identities=15% Similarity=0.138 Sum_probs=57.7
Q ss_pred cCCHHHHHHHHHHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHH--cCCccEEecCCCCHHHHHHHhhcCCceEE
Q 024050 104 KGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVE--EGKIKYIGLSEASPGTIRRAHAVHPITAV 181 (273)
Q Consensus 104 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~--~G~ir~iGvS~~~~~~l~~~~~~~~~~~~ 181 (273)
..+.+.+.+.+++.-+.+|+ .++.+|-.. -.+.++++++..+ +|.|-.=|--+++.-.|.+++....+.++
T Consensus 23 ~~tl~~i~~~l~~~a~~~g~-~v~~~QSN~------Egelid~I~~a~~~~dgiIINpga~THtSvAi~DAl~~~~~P~V 95 (140)
T cd00466 23 TTTLADIEALLRELAAELGV-EVEFFQSNH------EGELIDWIHEARDGADGIIINPGAYTHTSIALRDALAAVSIPVI 95 (140)
T ss_pred cCCHHHHHHHHHHHHHHcCC-EEEEEeeCc------HHHHHHHHHHhhccCcEEEEcchHHHHHHHHHHHHHHcCCCCEE
Confidence 35688999999999999996 477777332 3578888888754 34443334445666678888888777788
Q ss_pred eeeccccccc
Q 024050 182 QMEWSLWTRD 191 (273)
Q Consensus 182 q~~~~l~~~~ 191 (273)
.++.|-.+.+
T Consensus 96 EVHiSNi~aR 105 (140)
T cd00466 96 EVHISNIHAR 105 (140)
T ss_pred EEecCCcccc
Confidence 8888876654
No 193
>PLN02428 lipoic acid synthase
Probab=37.50 E-value=2.4e+02 Score=25.48 Aligned_cols=157 Identities=13% Similarity=0.217 Sum_probs=82.1
Q ss_pred CCHHHHHHHHHHHHHCCCCcccccc----CCCCCcHHHHHHHHHhcCCC--CCEEEEeccCcCCCCCccccccCCHHHHH
Q 024050 38 VSEEDGISMIKHAFSKGITFFDTAD----VYGQNANEVLLGKALKQLPR--EKIQVATKFGIAGIGVAGVIVKGAPDYVR 111 (273)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gin~~DtA~----~Yg~g~se~~lg~~l~~~~r--~~~~i~tK~~~~~~~~~~~~~~~~~~~i~ 111 (273)
.+.++..++.+.+.+.|++++=... .|..+..+ .+.+.++.+.+ ..+.|.. +.+.. ..+
T Consensus 130 ~d~~Ep~~vA~~v~~~Glk~vvltSg~rddl~D~ga~-~~~elir~Ir~~~P~i~Ie~-L~pdf--------~~d----- 194 (349)
T PLN02428 130 PDPDEPENVAEAIASWGVDYVVLTSVDRDDLPDGGSG-HFAETVRRLKQLKPEILVEA-LVPDF--------RGD----- 194 (349)
T ss_pred CChhhHHHHHHHHHHcCCCEEEEEEcCCCCCCcccHH-HHHHHHHHHHHhCCCcEEEE-eCccc--------cCC-----
Confidence 4567777888888888887543321 22222233 34444443221 1233322 11100 011
Q ss_pred HHHHHHHHHcCCCcccEEEecCCCCC-----------CCHHHHHHHHHHHHHc--CCccE----EecCCCCHHHHHHHhh
Q 024050 112 SCCEASLKRLDVDYIDLYYQHRVDTS-----------VPIEETIGEMKKLVEE--GKIKY----IGLSEASPGTIRRAHA 174 (273)
Q Consensus 112 ~~~~~sL~~L~~d~iDl~~lh~~~~~-----------~~~~~~~~~L~~l~~~--G~ir~----iGvS~~~~~~l~~~~~ 174 (273)
+.+-+.|..-| +|.+. |+++.. ...++.++.|+.+++. |..-. +|+ .-+.+.+.+.+.
T Consensus 195 ~elL~~L~eAG---~d~i~-hnlETv~rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi~tkSg~MvGL-GET~Edv~e~l~ 269 (349)
T PLN02428 195 LGAVETVATSG---LDVFA-HNIETVERLQRIVRDPRAGYKQSLDVLKHAKESKPGLLTKTSIMLGL-GETDEEVVQTME 269 (349)
T ss_pred HHHHHHHHHcC---CCEEc-cCccCcHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEec-CCCHHHHHHHHH
Confidence 22222233344 56633 777641 2356788999988887 76532 466 455555555443
Q ss_pred c---CCceEEee-ec----------cccccccc-ccHHHHHHHhCCeEEecccCC
Q 024050 175 V---HPITAVQM-EW----------SLWTRDIE-EEIIPLCRELGIGIVPYSPLG 214 (273)
Q Consensus 175 ~---~~~~~~q~-~~----------~l~~~~~~-~~l~~~~~~~gi~v~a~spl~ 214 (273)
. ..++.+.+ +| +-+-...+ ..+-+.+.+.|...++.+||-
T Consensus 270 ~Lrelgvd~vtigqyL~Ps~~h~~v~~~v~p~~f~~~~~~~~~~gf~~v~sgp~v 324 (349)
T PLN02428 270 DLRAAGVDVVTFGQYLRPTKRHLPVKEYVTPEKFEFWREYGEEMGFRYVASGPLV 324 (349)
T ss_pred HHHHcCCCEEeeccccCCCcceeeeecccCHHHHHHHHHHHHHcCCceEEecCcc
Confidence 3 33333333 22 22222212 667888889999999999987
No 194
>cd08570 GDPD_YPL206cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL206cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL206cp and uncharacterized hypothetical homologs existing in fungi. The product of S. cerevisiae ORF YPL206c (PGC1), YPL206cp (Pgc1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL206cp is an integral membrane protein with a single GDPD domain following by a short hydrophobic C-terminal tail that may function as a membrane anchor. This protein plays an essential role in the regulation of the cardiolipin (CL) biosynthetic pathway in yeast by removing the excess phosphatidylglycerol (PG) content of membranes via a phospholip
Probab=37.48 E-value=2.4e+02 Score=23.41 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=19.2
Q ss_pred CHHHHHHHHHHHHHCCCCccccc
Q 024050 39 SEEDGISMIKHAFSKGITFFDTA 61 (273)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~DtA 61 (273)
-+|.....++.|++.|+..|.+-
T Consensus 11 ~pENT~~af~~a~~~g~d~vE~D 33 (234)
T cd08570 11 YPENTLLAFEKAVEAGADAIETD 33 (234)
T ss_pred CCccHHHHHHHHHHhCCCEEEEE
Confidence 46789999999999999977654
No 195
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=37.05 E-value=2.2e+02 Score=25.68 Aligned_cols=90 Identities=10% Similarity=0.185 Sum_probs=56.1
Q ss_pred EEEecCCCCC-----------CCHHHHHHHHHHHHH-cCC---ccEEecCC--CCHHHHHHH---hhcCCceEEeeeccc
Q 024050 128 LYYQHRVDTS-----------VPIEETIGEMKKLVE-EGK---IKYIGLSE--ASPGTIRRA---HAVHPITAVQMEWSL 187 (273)
Q Consensus 128 l~~lh~~~~~-----------~~~~~~~~~L~~l~~-~G~---ir~iGvS~--~~~~~l~~~---~~~~~~~~~q~~~~l 187 (273)
.+.||.+++. .+++++++++.++.+ .|+ |+++=+.+ .+.++++++ ++..++.++-++||.
T Consensus 218 aiSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~~~~~~~g~~VtieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPynp 297 (355)
T TIGR00048 218 AISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLNKTGRRVTFEYVLLDGVNDQVEHAEELAELLKGTKCKVNLIPWNP 297 (355)
T ss_pred EEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCCCCCHHHHHHHHHHHhcCCCceEEEeccc
Confidence 4779999742 236788888876544 443 44443433 344555554 333456777889998
Q ss_pred cccc----cc----ccHHHHHHHhCCeEEecccCCCcc
Q 024050 188 WTRD----IE----EEIIPLCRELGIGIVPYSPLGRGF 217 (273)
Q Consensus 188 ~~~~----~~----~~l~~~~~~~gi~v~a~spl~~G~ 217 (273)
+... +. ....+..+++|+.|......+.-+
T Consensus 298 ~~~~~~~~ps~e~i~~f~~~L~~~gi~v~iR~~~G~di 335 (355)
T TIGR00048 298 FPEADYERPSNEQIDRFAKTLMSYGFTVTIRKSRGDDI 335 (355)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCcch
Confidence 6531 11 345666777899999988877544
No 196
>PRK08084 DNA replication initiation factor; Provisional
Probab=37.03 E-value=81 Score=26.44 Aligned_cols=45 Identities=9% Similarity=0.226 Sum_probs=33.4
Q ss_pred cccEEEecCCCCCCC----HHHHHHHHHHHHHcCCccEEecCCCCHHHH
Q 024050 125 YIDLYYQHRVDTSVP----IEETIGEMKKLVEEGKIKYIGLSEASPGTI 169 (273)
Q Consensus 125 ~iDl~~lh~~~~~~~----~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l 169 (273)
..|++.|...+.... .++.++.+..+++.|+++-|+.|+.++..+
T Consensus 97 ~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l 145 (235)
T PRK08084 97 QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQL 145 (235)
T ss_pred hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHc
Confidence 358898877654321 235678889999999999999999777663
No 197
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=37.03 E-value=2.2e+02 Score=23.54 Aligned_cols=48 Identities=19% Similarity=0.222 Sum_probs=26.9
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEecCCC
Q 024050 106 APDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEA 164 (273)
Q Consensus 106 ~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~ 164 (273)
+++.+.+. ++.++ +|++|||...+ .+.++.|.+...-..++.+.+.+.
T Consensus 65 ~~~~i~~~----~~~~~---~d~vQLHg~e~----~~~~~~l~~~~~~~iik~i~v~~~ 112 (210)
T PRK01222 65 SDEEIDEI----VETVP---LDLLQLHGDET----PEFCRQLKRRYGLPVIKALRVRSA 112 (210)
T ss_pred CHHHHHHH----HHhcC---CCEEEECCCCC----HHHHHHHHhhcCCcEEEEEecCCH
Confidence 34444443 34454 79999998643 233334333222356888888753
No 198
>PRK12928 lipoyl synthase; Provisional
Probab=36.86 E-value=2.9e+02 Score=24.16 Aligned_cols=71 Identities=14% Similarity=0.128 Sum_probs=41.7
Q ss_pred cCCHHHHHHHHHHHHHHcCCCcccEEEecCCCC-CCCHHHHHHHHHHHHHcC-CccEEec--CCC---CHHHHHHHhhcC
Q 024050 104 KGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDT-SVPIEETIGEMKKLVEEG-KIKYIGL--SEA---SPGTIRRAHAVH 176 (273)
Q Consensus 104 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~-~~~~~~~~~~L~~l~~~G-~ir~iGv--S~~---~~~~l~~~~~~~ 176 (273)
..+++.+.+.++ .+.++|+.++-+.-.+..|. +.+.....+.++.+++.. .+ .|.+ ..+ ..+.|.++.+..
T Consensus 86 ~~~~eei~~~a~-~~~~~G~keivitg~~~dDl~d~g~~~~~ell~~Ik~~~p~~-~I~~ltp~~~~~~~e~L~~l~~Ag 163 (290)
T PRK12928 86 PLDPDEPERVAE-AVAALGLRYVVLTSVARDDLPDGGAAHFVATIAAIRARNPGT-GIEVLTPDFWGGQRERLATVLAAK 163 (290)
T ss_pred CCCHHHHHHHHH-HHHHCCCCEEEEEEEeCCcccccCHHHHHHHHHHHHhcCCCC-EEEEeccccccCCHHHHHHHHHcC
Confidence 467888998887 57778999998888776432 233334445555556543 22 2332 222 235566665553
No 199
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=36.64 E-value=4.1e+02 Score=25.92 Aligned_cols=23 Identities=9% Similarity=0.094 Sum_probs=18.1
Q ss_pred CCHHHHHHHHHHHHHCCCCcccc
Q 024050 38 VSEEDGISMIKHAFSKGITFFDT 60 (273)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gin~~Dt 60 (273)
++.++...+....-+.|+..++.
T Consensus 24 ~~~~d~l~ia~~ld~~G~~siE~ 46 (593)
T PRK14040 24 LRLDDMLPIAAKLDKVGYWSLES 46 (593)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEe
Confidence 46788888888888889887776
No 200
>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]
Probab=36.62 E-value=2.9e+02 Score=25.31 Aligned_cols=146 Identities=12% Similarity=0.122 Sum_probs=80.9
Q ss_pred CCHHHHHHHHHHHHHCCCC-ccccccCCCCCcHHHHHHHHHhcCCCCCEEEEeccCcCCC--CCccccccCCHHHHHHHH
Q 024050 38 VSEEDGISMIKHAFSKGIT-FFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGI--GVAGVIVKGAPDYVRSCC 114 (273)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gin-~~DtA~~Yg~g~se~~lg~~l~~~~r~~~~i~tK~~~~~~--~~~~~~~~~~~~~i~~~~ 114 (273)
.+-++-.+=+..|.+.|.. .-|-+.. | .-..+.+++-+ -..+=|.|= +.... .......+.+.+.+...+
T Consensus 75 ~~i~~EveK~~~A~~~GADtvMDLStG-g---dl~eiR~~ii~--~s~vPvGTV-PIYqA~~~~~~~~~~~t~d~~~~~v 147 (432)
T COG0422 75 SDIDEEVEKAVWAIKWGADTVMDLSTG-G---DLHEIREWIIR--NSPVPVGTV-PIYQALEEVNGKVEDLTEDDFFDTV 147 (432)
T ss_pred CCHHHHHHHHHHHHHhCcceeEecccC-C---CHHHHHHHHHh--cCCCCcCCc-hHHHHHHHHhcchhhCCHHHHHHHH
Confidence 3556666777889999964 4565532 3 33445555532 111112111 00000 000113356677777777
Q ss_pred HHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEecCCCCHHHHHHHhhcCCceEEeeecccccccccc
Q 024050 115 EASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRDIEE 194 (273)
Q Consensus 115 ~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~~l~~~~~~~ 194 (273)
++..+ +-+|.+-+|. .-..+.+..+++.|++ .|+-+-.-..+...+-.. ..-|++.... .
T Consensus 148 ~~qa~----~GVdfmTIHa-------GV~~~~~~~~~~~~R~--~giVSRGGsi~a~Wml~~------~~ENply~~f-d 207 (432)
T COG0422 148 EKQAE----QGVDFMTIHA-------GVLLEYVPRTKRSGRV--TGIVSRGGSIMAAWMLHN------HKENPLYEHF-D 207 (432)
T ss_pred HHHHH----hCCcEEEeeh-------hhhHHHHHHHHhcCce--eeeeccchHHHHHHHHHc------CCcCchhhhH-H
Confidence 77766 6789999996 2367888899999986 566554433333221111 1224444444 6
Q ss_pred cHHHHHHHhCCeEEec
Q 024050 195 EIIPLCRELGIGIVPY 210 (273)
Q Consensus 195 ~l~~~~~~~gi~v~a~ 210 (273)
++++.|+++++.+---
T Consensus 208 ~lleI~k~yDvtlSLG 223 (432)
T COG0422 208 ELLEIFKEYDVTLSLG 223 (432)
T ss_pred HHHHHHHHhCeeeecc
Confidence 7888888888877433
No 201
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=36.42 E-value=3.4e+02 Score=24.84 Aligned_cols=148 Identities=15% Similarity=0.137 Sum_probs=74.6
Q ss_pred CHHHHHHHHHHHHHCCCCccccccCCCCCcHH---HHHHHHHhc-----CCCCCEEEEeccCcCCCCCccccccCCHHHH
Q 024050 39 SEEDGISMIKHAFSKGITFFDTADVYGQNANE---VLLGKALKQ-----LPREKIQVATKFGIAGIGVAGVIVKGAPDYV 110 (273)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~se---~~lg~~l~~-----~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i 110 (273)
...+..+.|+.++++|+- .|.. .++ +.+-.|.++ .+.+.++++.- +
T Consensus 39 ~pp~i~~Al~~rvdhGvf------GY~~-~~~~~~~ai~~w~~~r~~~~i~~e~i~~~p~-------------------V 92 (388)
T COG1168 39 TPPEIIEALRERVDHGVF------GYPY-GSDELYAAIAHWFKQRHQWEIKPEWIVFVPG-------------------V 92 (388)
T ss_pred CCHHHHHHHHHHHhcCCC------CCCC-CCHHHHHHHHHHHHHhcCCCCCcceEEEcCc-------------------c
Confidence 467899999999999974 3331 233 445555554 22333333222 2
Q ss_pred HHHHHHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCC-ccEE----ecCCC--CHHHHHHHhhcC--CceEE
Q 024050 111 RSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGK-IKYI----GLSEA--SPGTIRRAHAVH--PITAV 181 (273)
Q Consensus 111 ~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~-ir~i----GvS~~--~~~~l~~~~~~~--~~~~~ 181 (273)
...+...++.| |+-=|-+.++.|-. .|+..+. +..|+ +-.. +=..| +-+.+++++... +.-+.
T Consensus 93 Vpgi~~~I~~~-T~~gd~Vvi~tPvY-~PF~~~i------~~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~~vkl~iL 164 (388)
T COG1168 93 VPGISLAIRAL-TKPGDGVVIQTPVY-PPFYNAI------KLNGRKVIENPLVEDDGRYEIDFDALEKAFVDERVKLFIL 164 (388)
T ss_pred hHhHHHHHHHh-CcCCCeeEecCCCc-hHHHHHH------hhcCcEEEeccccccCCcEEecHHHHHHHHhcCCccEEEE
Confidence 33344444444 35567888887732 1111111 11111 0000 00112 456666665543 33344
Q ss_pred eeecccccccc---c-ccHHHHHHHhCCeEEecccCCCccCCC
Q 024050 182 QMEWSLWTRDI---E-EEIIPLCRELGIGIVPYSPLGRGFFGG 220 (273)
Q Consensus 182 q~~~~l~~~~~---~-~~l~~~~~~~gi~v~a~spl~~G~L~~ 220 (273)
-++.|+.-+-. | ..+.+.|++|||-||+=..-+-=.++|
T Consensus 165 CnPHNP~Grvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g 207 (388)
T COG1168 165 CNPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGG 207 (388)
T ss_pred eCCCCCCCccccHHHHHHHHHHHHHcCCEEEeecccccccccC
Confidence 44556555421 2 678899999999999644443223444
No 202
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=36.38 E-value=1.6e+02 Score=25.49 Aligned_cols=95 Identities=15% Similarity=0.094 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHcCCCcccEEEecCCCC---CCCHHHHHHHHHHHHHcCCccEEecCCCCHHHHHHHhhcCCceEEeeecc
Q 024050 110 VRSCCEASLKRLDVDYIDLYYQHRVDT---SVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHPITAVQMEWS 186 (273)
Q Consensus 110 i~~~~~~sL~~L~~d~iDl~~lh~~~~---~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~~ 186 (273)
-+..+-+.|.++|+++|++-.+-.|.. ..+.+++...+.. ...++..++. .+...++++++.. ++.+.+..+
T Consensus 21 ~K~~i~~~L~~~Gv~~IEvGs~~~~~~~p~~~d~~~~~~~l~~---~~~~~~~~~~-~~~~dv~~A~~~g-~~~i~i~~~ 95 (274)
T cd07938 21 DKIELIDALSAAGLRRIEVTSFVSPKWVPQMADAEEVLAGLPR---RPGVRYSALV-PNLRGAERALAAG-VDEVAVFVS 95 (274)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCCCcccccccCCHHHHHhhccc---CCCCEEEEEC-CCHHHHHHHHHcC-cCEEEEEEe
Confidence 345666679999999999975433331 1223444444443 2346667765 4667788888764 222333222
Q ss_pred ccc--------cc------ccccHHHHHHHhCCeEEe
Q 024050 187 LWT--------RD------IEEEIIPLCRELGIGIVP 209 (273)
Q Consensus 187 l~~--------~~------~~~~l~~~~~~~gi~v~a 209 (273)
.-+ .. ...+.+++++++|+.+..
T Consensus 96 ~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~ 132 (274)
T cd07938 96 ASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRG 132 (274)
T ss_pred cCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 211 00 015578999999998864
No 203
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=36.36 E-value=1.9e+02 Score=25.96 Aligned_cols=62 Identities=10% Similarity=0.134 Sum_probs=37.3
Q ss_pred ccEEecCCCCHHHHHHHhhc-CCceEEeeecccccccc-cccHHHHHHHhCCeEEecccCCCcc
Q 024050 156 IKYIGLSEASPGTIRRAHAV-HPITAVQMEWSLWTRDI-EEEIIPLCRELGIGIVPYSPLGRGF 217 (273)
Q Consensus 156 ir~iGvS~~~~~~l~~~~~~-~~~~~~q~~~~l~~~~~-~~~l~~~~~~~gi~v~a~spl~~G~ 217 (273)
++-.-+...+++.+++++.. .+..++..+.|+..... ..++.+.|+++|+.++.=..++.++
T Consensus 116 ~~v~~vd~~d~~~l~~~i~~~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~~~~~ 179 (366)
T PRK08247 116 VRFVYVNTASLKAIEQAITPNTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFYTPV 179 (366)
T ss_pred ceEEEECCCCHHHHHHhcccCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcccc
Confidence 34444444566777766543 44556666777643322 2778888888888888655554443
No 204
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=36.35 E-value=3.6e+02 Score=25.08 Aligned_cols=107 Identities=12% Similarity=0.069 Sum_probs=61.9
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEecCCCCCCCHHHHHHH-HHHHHHcCCccEEecCC---------CCHHHHHHHhhc
Q 024050 106 APDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGE-MKKLVEEGKIKYIGLSE---------ASPGTIRRAHAV 175 (273)
Q Consensus 106 ~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~-L~~l~~~G~ir~iGvS~---------~~~~~l~~~~~~ 175 (273)
+.+.+.+.++..-+..+ +.-++|-.-|+.....+.++. |.+|.+--.|+.|.+.+ .+.+ +.+.++.
T Consensus 139 s~eei~~~i~yI~~~p~---I~~VlLSGGDPLll~d~~L~~iL~~L~~IphV~~IRI~TR~pvv~P~RIT~e-ll~~Lk~ 214 (417)
T TIGR03820 139 SKEQILEGIEYIRNTPQ---IRDVLLSGGDPLLLSDDYLDWILTELRAIPHVEVIRIGTRVPVVLPQRITDE-LVAILKK 214 (417)
T ss_pred CHHHHHHHHHHHHhcCC---CCEEEEeCCccccCChHHHHHHHHHHhhcCCCceEEEeeccccccccccCHH-HHHHHHh
Confidence 45556665555544333 333555554444333345554 56666655566444432 3333 3334444
Q ss_pred CCceEEeeeccccccccc---ccHHHHHHHhCCeEEecccCCCcc
Q 024050 176 HPITAVQMEWSLWTRDIE---EEIIPLCRELGIGIVPYSPLGRGF 217 (273)
Q Consensus 176 ~~~~~~q~~~~l~~~~~~---~~l~~~~~~~gi~v~a~spl~~G~ 217 (273)
..+..+++++|-- +... .+.++.+++.||.+.+-++|..|+
T Consensus 215 ~~~~~v~~h~nhp-~Eit~~a~~Al~~L~~aGI~l~nQsVLLkGV 258 (417)
T TIGR03820 215 HHPVWLNTHFNHP-REITASSKKALAKLADAGIPLGNQSVLLAGV 258 (417)
T ss_pred cCCeEEEEeCCCh-HhChHHHHHHHHHHHHcCCEEEeeceEECCc
Confidence 4567788887764 2211 556677778899999999999985
No 205
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=36.14 E-value=69 Score=26.32 Aligned_cols=45 Identities=22% Similarity=0.364 Sum_probs=31.0
Q ss_pred cEEecCC-CCHHHHHHHhhcC-CceEEeeecccccccccccHHHHHHHhCCeEEe
Q 024050 157 KYIGLSE-ASPGTIRRAHAVH-PITAVQMEWSLWTRDIEEEIIPLCRELGIGIVP 209 (273)
Q Consensus 157 r~iGvS~-~~~~~l~~~~~~~-~~~~~q~~~~l~~~~~~~~l~~~~~~~gi~v~a 209 (273)
-.||..+ .+.++++++++.. .|.+ .+....+++++|+++|+.++.
T Consensus 60 ~~vGAGTV~~~e~a~~a~~aGA~Fiv--------SP~~~~~v~~~~~~~~i~~iP 106 (196)
T PF01081_consen 60 LLVGAGTVLTAEQAEAAIAAGAQFIV--------SPGFDPEVIEYAREYGIPYIP 106 (196)
T ss_dssp SEEEEES--SHHHHHHHHHHT-SEEE--------ESS--HHHHHHHHHHTSEEEE
T ss_pred CeeEEEeccCHHHHHHHHHcCCCEEE--------CCCCCHHHHHHHHHcCCcccC
Confidence 4588877 5888899888873 3321 222237899999999998885
No 206
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=36.12 E-value=2.6e+02 Score=23.50 Aligned_cols=23 Identities=13% Similarity=0.203 Sum_probs=19.6
Q ss_pred CHHHHHHHHHHHHHCCCCccccc
Q 024050 39 SEEDGISMIKHAFSKGITFFDTA 61 (273)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~DtA 61 (273)
-+|.....++.|++.|...|.+-
T Consensus 20 ~pENT~~Af~~A~~~G~d~vE~D 42 (249)
T PRK09454 20 APENTLAAIDVGARYGHRMIEFD 42 (249)
T ss_pred CChHHHHHHHHHHHcCCCEEEEE
Confidence 47899999999999999877643
No 207
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=35.83 E-value=1.9e+02 Score=26.09 Aligned_cols=101 Identities=13% Similarity=0.077 Sum_probs=59.7
Q ss_pred CCCEEEEeccCcCCC------CCccccccCCHHHHHHHHHHHHHHcCCCcccEEEecC-CCCCCCHHHHHHHHHHHHHcC
Q 024050 82 REKIQVATKFGIAGI------GVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHR-VDTSVPIEETIGEMKKLVEEG 154 (273)
Q Consensus 82 r~~~~i~tK~~~~~~------~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~-~~~~~~~~~~~~~L~~l~~~G 154 (273)
|..+.|+|-++.... +..+....++.+.|..++...-+. +.++-+.+-. -++....+++.+++..+.+..
T Consensus 102 r~t~cvSsQvGC~~~C~FC~Tg~~g~~rnLt~~EIl~Qv~~~~~~---~~i~nIvfmGmGEPL~N~d~vi~al~~l~~~~ 178 (345)
T PRK14466 102 RATLCVSSQVGCKMNCLFCMTGKQGFTGNLTAAQILNQIYSLPER---DKLTNLVFMGMGEPLDNLDEVLKALEILTAPY 178 (345)
T ss_pred ceEEEEEcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHhhhhc---CCCCeEEEeeeCcCcccHHHHHHHHHHHhhcc
Confidence 555667766664431 111223457889999998876322 2355555554 233344678999999998764
Q ss_pred Cc----cEEecCCCCHH-HHHHHhhcCCceEEeeecc
Q 024050 155 KI----KYIGLSEASPG-TIRRAHAVHPITAVQMEWS 186 (273)
Q Consensus 155 ~i----r~iGvS~~~~~-~l~~~~~~~~~~~~q~~~~ 186 (273)
-. |.|-||+.... .+.++....+ ....+.+|
T Consensus 179 g~~~s~r~ItVsT~G~~~~i~~l~~~~~-~~LavSLh 214 (345)
T PRK14466 179 GYGWSPKRITVSTVGLKKGLKRFLEESE-CHLAISLH 214 (345)
T ss_pred ccCcCCceEEEEcCCCchHHHHHhhccC-cEEEEEcC
Confidence 44 67888887653 4666555333 23344444
No 208
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=35.82 E-value=1.5e+02 Score=26.71 Aligned_cols=90 Identities=12% Similarity=0.027 Sum_probs=57.9
Q ss_pred EEEecCCCCC-----------CCHHHHHHHHHHHHHcCC----ccEEecC--CCCHHHHHHHhh---cCCceEEeeeccc
Q 024050 128 LYYQHRVDTS-----------VPIEETIGEMKKLVEEGK----IKYIGLS--EASPGTIRRAHA---VHPITAVQMEWSL 187 (273)
Q Consensus 128 l~~lh~~~~~-----------~~~~~~~~~L~~l~~~G~----ir~iGvS--~~~~~~l~~~~~---~~~~~~~q~~~~l 187 (273)
.+.||.|+.. .+++++++++.+..+... +-|+=+. |.+.+++.++.+ ..+..++-++||+
T Consensus 210 avSLha~~~e~R~~i~P~~~~~~l~~l~~al~~y~~~~~rri~~Ey~Li~gvND~~e~a~~L~~ll~~~~~~VNLIp~Np 289 (345)
T PRK14466 210 AISLHSPFPEQRRELMPAEKAFSIKEIIDLLKNYDFSKQRRVSFEYIVFKGLNDSLKHAKELVKLLRGIDCRVNLIRFHA 289 (345)
T ss_pred EEEcCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHhhCCEEEEEEEEeCCCCCCHHHHHHHHHHHcCCCceEEEEecCC
Confidence 5889988642 347888898888654332 2333333 455655555444 3566788889997
Q ss_pred ccc-----ccc---ccHHHHHHHhCCeEEecccCCCcc
Q 024050 188 WTR-----DIE---EEIIPLCRELGIGIVPYSPLGRGF 217 (273)
Q Consensus 188 ~~~-----~~~---~~l~~~~~~~gi~v~a~spl~~G~ 217 (273)
... ... ....+..+++||.+..+...+.-+
T Consensus 290 ~~~~~~~~~s~~~~~~F~~~L~~~gi~~tvR~s~G~dI 327 (345)
T PRK14466 290 IPGVDLEGSDMARMEAFRDYLTSHGVFTTIRASRGEDI 327 (345)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHCCCcEEEeCCCCCch
Confidence 443 111 456666778999999998877544
No 209
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=35.78 E-value=1.3e+02 Score=27.62 Aligned_cols=69 Identities=19% Similarity=0.132 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHcCCc--c-EEecCCCCHHHHHHHhhcCCceEEeeeccccccccc-ccHHHHHHHhCCeEEec
Q 024050 142 ETIGEMKKLVEEGKI--K-YIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRDIE-EEIIPLCRELGIGIVPY 210 (273)
Q Consensus 142 ~~~~~L~~l~~~G~i--r-~iGvS~~~~~~l~~~~~~~~~~~~q~~~~l~~~~~~-~~l~~~~~~~gi~v~a~ 210 (273)
+-++.+.+|++.-.+ . .-|=+.++...+..+++..-++++|+...-.---.+ ..+...|..+|+.+...
T Consensus 246 ~d~~~~~~L~~~~~~~i~ia~gE~~~~~~~~~~li~~~a~Divq~d~~~~GGit~~~kia~lA~a~gi~~~pH 318 (394)
T PRK15440 246 DDYWGYRELKRNAPAGMMVTSGEHEATLQGFRTLLEMGCIDIIQPDVGWCGGLTELVKIAALAKARGQLVVPH 318 (394)
T ss_pred ccHHHHHHHHHhCCCCCceecCCCccCHHHHHHHHHcCCCCEEeCCccccCCHHHHHHHHHHHHHcCCeeccc
Confidence 347778888876542 2 236677888889999988888999987776532112 67899999999998765
No 210
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=35.68 E-value=23 Score=35.04 Aligned_cols=76 Identities=17% Similarity=0.075 Sum_probs=48.5
Q ss_pred HHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEecCCCCHHHHHHHhhcCCceEEeeeccccccccc-
Q 024050 115 EASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRDIE- 193 (273)
Q Consensus 115 ~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~~l~~~~~~- 193 (273)
-.-|+.||+.+|.|+=+|........ .+.|+.-++|-....-=.++.... -.+. +..+-.|
T Consensus 206 i~yLk~LGvtaVeLLPV~~~~~~~~l----------~~~gl~n~WGYdP~~fFAp~~~Ys-------s~p~-p~~~i~Ef 267 (697)
T COG1523 206 IDYLKDLGVTAVELLPVFDFYDEPHL----------DKSGLNNNWGYDPLNFFAPEGRYA-------SNPE-PATRIKEF 267 (697)
T ss_pred HHHHHHhCCceEEEecceEEeccccc----------cccccccccCCCcccccCCCcccc-------CCCC-cchHHHHH
Confidence 56789999999999999877554322 278888888877533111111111 1111 2223223
Q ss_pred ccHHHHHHHhCCeEE
Q 024050 194 EEIIPLCRELGIGIV 208 (273)
Q Consensus 194 ~~l~~~~~~~gi~v~ 208 (273)
+.++..++++||+||
T Consensus 268 K~mV~~lHkaGI~VI 282 (697)
T COG1523 268 KDMVKALHKAGIEVI 282 (697)
T ss_pred HHHHHHHHHcCCEEE
Confidence 889999999999998
No 211
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=35.62 E-value=1.2e+02 Score=26.97 Aligned_cols=90 Identities=18% Similarity=0.136 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHcCCCcccEEEecCCCCC-CCHHHHHHHHHHHHHcCCccEEecC--CCCHHHHHHHhhcCCceEEee
Q 024050 107 PDYVRSCCEASLKRLDVDYIDLYYQHRVDTS-VPIEETIGEMKKLVEEGKIKYIGLS--EASPGTIRRAHAVHPITAVQM 183 (273)
Q Consensus 107 ~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~-~~~~~~~~~L~~l~~~G~ir~iGvS--~~~~~~l~~~~~~~~~~~~q~ 183 (273)
.+++++.++...++|+.....+-+--..... +--..+-+.|++|.++| ++.|=|- +|-.|++|-+.+..
T Consensus 206 ~~~~~~t~~~i~~~l~~~~~~~~fQS~~g~~~WL~P~~~~~l~~l~~~G-~~~V~v~p~gFv~D~lETl~eid------- 277 (316)
T PF00762_consen 206 PAQCEETARLIAERLGLPEWRLAFQSRFGPGEWLGPSTEDVLEELAKEG-VKRVVVVPPGFVSDCLETLYEID------- 277 (316)
T ss_dssp HHHHHHHHHHHHHHTTTSSEEEEEES-SSSS-BSSSBHHHHHHHHHHCT--SEEEEEETT-SSSSHHHHCCCC-------
T ss_pred HHHHHHHHHHHHHHcCCCceEEEEECCCCCCCCccccHHHHHHHHHhcC-CCeEEEECCccccccHhHHHHHH-------
Confidence 6678899999999999876555554334332 11124778899999999 4555332 24445555443321
Q ss_pred ecccccccccccHHHHHHHhCCeEEecccCC
Q 024050 184 EWSLWTRDIEEEIIPLCRELGIGIVPYSPLG 214 (273)
Q Consensus 184 ~~~l~~~~~~~~l~~~~~~~gi~v~a~spl~ 214 (273)
.+.-+.+.++|+.-+.+-|-.
T Consensus 278 ----------ie~re~~~~~G~~~~~~ip~l 298 (316)
T PF00762_consen 278 ----------IEYRELAEEAGGEEFVRIPCL 298 (316)
T ss_dssp ----------CHHHHHHHHHTCCEEEE---S
T ss_pred ----------HHHHHHHHHcCCceEEEeCCC
Confidence 346788889998777776654
No 212
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=35.57 E-value=2.4e+02 Score=22.89 Aligned_cols=100 Identities=17% Similarity=0.180 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHcCCCcccEEE-ecCCCCCCCHHHHHHHHHHHHHcCCccEEecCCCCH--HHHHHHhhcCCceEEeee
Q 024050 108 DYVRSCCEASLKRLDVDYIDLYY-QHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASP--GTIRRAHAVHPITAVQME 184 (273)
Q Consensus 108 ~~i~~~~~~sL~~L~~d~iDl~~-lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~--~~l~~~~~~~~~~~~q~~ 184 (273)
......+...++..+..--.+++ +.............+.+..+++.|- .+++.++.. ..++. +...+++++-+.
T Consensus 98 ~~~~~~~~~~l~~~~~~~~~l~iei~e~~~~~~~~~~~~~~~~l~~~G~--~l~ld~~g~~~~~~~~-l~~~~~d~iKld 174 (240)
T cd01948 98 PDFLDRLLELLAETGLPPRRLVLEITESALIDDLEEALATLRRLRALGV--RIALDDFGTGYSSLSY-LKRLPVDYLKID 174 (240)
T ss_pred cHHHHHHHHHHHHcCCCHHHEEEEEecchhhCCHHHHHHHHHHHHHCCC--eEEEeCCCCcHhhHHH-HHhCCCCEEEEC
Confidence 44567777888888865422222 2222222344568899999999998 577777643 22333 333456777666
Q ss_pred ccccccc--------ccccHHHHHHHhCCeEEec
Q 024050 185 WSLWTRD--------IEEEIIPLCRELGIGIVPY 210 (273)
Q Consensus 185 ~~l~~~~--------~~~~l~~~~~~~gi~v~a~ 210 (273)
.+++..- .-..++..|+..|+.|++-
T Consensus 175 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~ 208 (240)
T cd01948 175 RSFVRDIETDPEDRAIVRAIIALAHSLGLKVVAE 208 (240)
T ss_pred HHHHHhHhcChhhHHHHHHHHHHHHHCCCeEEEE
Confidence 5554331 1166889999999999984
No 213
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=35.37 E-value=2.9e+02 Score=23.68 Aligned_cols=105 Identities=16% Similarity=0.073 Sum_probs=72.5
Q ss_pred cCCHHHHHHHHHHHHHHcCCCcccEEEecCCCCC-CCHHHHHHHHHHHHHcCCccEEecCCCCHHHHHHHhhcCCceEEe
Q 024050 104 KGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS-VPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHPITAVQ 182 (273)
Q Consensus 104 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~-~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q 182 (273)
..+.+...+..+-..|-++++.|=|=.+.++... .++.+++++.++|+++|.+- +-+++.++...+++.+.. +++++
T Consensus 72 ~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~v-lpyc~dd~~~ar~l~~~G-~~~vm 149 (248)
T cd04728 72 CRTAEEAVRTARLAREALGTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTV-LPYCTDDPVLAKRLEDAG-CAAVM 149 (248)
T ss_pred CCCHHHHHHHHHHHHHHhCCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEE-EEEeCCCHHHHHHHHHcC-CCEeC
Confidence 5678888888888899999999988888877655 44789999999999999964 557777887777766653 33332
Q ss_pred eeccccccc--c-cccHHHHHHH-hCCeEEec
Q 024050 183 MEWSLWTRD--I-EEEIIPLCRE-LGIGIVPY 210 (273)
Q Consensus 183 ~~~~l~~~~--~-~~~l~~~~~~-~gi~v~a~ 210 (273)
.-=+++... . ..++++...+ .++.|++-
T Consensus 150 Plg~pIGsg~Gi~~~~~I~~I~e~~~vpVI~e 181 (248)
T cd04728 150 PLGSPIGSGQGLLNPYNLRIIIERADVPVIVD 181 (248)
T ss_pred CCCcCCCCCCCCCCHHHHHHHHHhCCCcEEEe
Confidence 212222221 0 1445566665 47888875
No 214
>PRK05968 hypothetical protein; Provisional
Probab=35.34 E-value=1.9e+02 Score=26.23 Aligned_cols=50 Identities=8% Similarity=0.026 Sum_probs=29.2
Q ss_pred CHHHHHHHhhcCCceEEeeeccccccccc-ccHHHHHHHhCCeEEecccCC
Q 024050 165 SPGTIRRAHAVHPITAVQMEWSLWTRDIE-EEIIPLCRELGIGIVPYSPLG 214 (273)
Q Consensus 165 ~~~~l~~~~~~~~~~~~q~~~~l~~~~~~-~~l~~~~~~~gi~v~a~spl~ 214 (273)
+++.+++++...++.+++.+.|..-.... ..+.+.|+++|+.++.=..++
T Consensus 137 d~~~l~~~i~~tklV~ie~pt~~~~~~~dl~~i~~la~~~gi~vivD~a~a 187 (389)
T PRK05968 137 DEEAVAKALPGAKLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDNSWA 187 (389)
T ss_pred CHHHHHHhcccCCEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCc
Confidence 55666666544555666666665443222 567777777777776444433
No 215
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=35.31 E-value=2.2e+02 Score=25.77 Aligned_cols=61 Identities=5% Similarity=0.058 Sum_probs=35.3
Q ss_pred ccEEecCCCCHHHHHHHhhc-CCceEEeeeccccccccc-ccHHHHHHHhCCeEEecccCCCc
Q 024050 156 IKYIGLSEASPGTIRRAHAV-HPITAVQMEWSLWTRDIE-EEIIPLCRELGIGIVPYSPLGRG 216 (273)
Q Consensus 156 ir~iGvS~~~~~~l~~~~~~-~~~~~~q~~~~l~~~~~~-~~l~~~~~~~gi~v~a~spl~~G 216 (273)
++..-+...+++.++++++. .+..++..+.|+.-.-.. .++.+.|+++|+.++.=..++.+
T Consensus 111 ~~v~~vd~~d~~~le~~i~~~tklv~le~psnptg~v~dl~~I~~la~~~g~~vivD~a~~~~ 173 (378)
T TIGR01329 111 VVVVHVDTTDLDKVKAALGPKTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDNTMMSP 173 (378)
T ss_pred cEEEEeCCCCHHHHHHhcCcCceEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCccc
Confidence 33333333466677766642 445555666665443222 66788888888888755554434
No 216
>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]
Probab=35.28 E-value=2.5e+02 Score=26.15 Aligned_cols=68 Identities=19% Similarity=0.322 Sum_probs=39.5
Q ss_pred HHHHHHHHHHcCC-ccEEecCCC---CHHHHHHHhhc-CCceEEeeeccccc-ccccccHHHHHHHhCCeEEec
Q 024050 143 TIGEMKKLVEEGK-IKYIGLSEA---SPGTIRRAHAV-HPITAVQMEWSLWT-RDIEEEIIPLCRELGIGIVPY 210 (273)
Q Consensus 143 ~~~~L~~l~~~G~-ir~iGvS~~---~~~~l~~~~~~-~~~~~~q~~~~l~~-~~~~~~l~~~~~~~gi~v~a~ 210 (273)
+....+.|+++|. ++++.+.+- +.+.++++++. +..+.+..--|... -.+.+++...|++.||.|++=
T Consensus 144 v~~s~~~l~~~g~~Vt~lpv~~~~~~d~~~~~~~i~~~T~lv~I~~Vnn~~gv~~Pv~EI~~icr~~~v~v~~D 217 (428)
T KOG1549|consen 144 VLDSCRALQEEGLEVTYLPVEDSGLVDISKLREAIRSKTRLVSIMHVNNEIGVLQPVKEIVKICREEGVQVHVD 217 (428)
T ss_pred hhHHHHHHHhcCeEEEEeccCccccccHHHHHHhcCCCceEEEEEecccCccccccHHHHHHHhCcCCcEEEee
Confidence 5566677788885 677788753 34555555544 33333332222221 122378888999998877643
No 217
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=35.27 E-value=1.5e+02 Score=27.56 Aligned_cols=89 Identities=15% Similarity=0.201 Sum_probs=54.4
Q ss_pred HHHHcCCCcccEEEecCCCCC-CCHHHHHHHHHHHHHcCCccEEecCCCCHHHHHHHhhc-----C---CceEEeeeccc
Q 024050 117 SLKRLDVDYIDLYYQHRVDTS-VPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAV-----H---PITAVQMEWSL 187 (273)
Q Consensus 117 sL~~L~~d~iDl~~lh~~~~~-~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~-----~---~~~~~q~~~~l 187 (273)
.++.+|++|. ++..|-.. .. ..+-...+-+.|-+..+|....+++.+++.+.. . ++-+|-+ .+.
T Consensus 6 f~~~lgiryP---ii~gpMa~Gis---s~eLVaAvs~AGgLG~lgag~l~~e~l~~~I~~ir~~lt~~~PfGVNL~-~~~ 78 (418)
T cd04742 6 FKEDYGLRYA---YVAGAMARGIA---SAELVVAMGKAGMLGFFGAGGLPLDEVEQAIERIQAALGNGEPYGVNLI-HSP 78 (418)
T ss_pred HHHHhCCCcc---EECCcccCCCC---CHHHHHHHHhCCCeeeecCCCCCHHHHHHHHHHHHHhccCCCCeEEeee-cCC
Confidence 3466777665 33333221 11 223345567899999999999999888766543 1 3444333 222
Q ss_pred ccccccccHHHHHHHhCCeEEeccc
Q 024050 188 WTRDIEEEIIPLCRELGIGIVPYSP 212 (273)
Q Consensus 188 ~~~~~~~~l~~~~~~~gi~v~a~sp 212 (273)
-++..+.++++.+.++||.++.-+-
T Consensus 79 ~~~~~e~~~v~l~le~gV~~ve~sa 103 (418)
T cd04742 79 DEPELEEGLVDLFLRHGVRVVEASA 103 (418)
T ss_pred CCchhHHHHHHHHHHcCCCEEEecc
Confidence 2222246789999999998876654
No 218
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=34.91 E-value=42 Score=24.87 Aligned_cols=28 Identities=11% Similarity=0.241 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHHHHHCCCCccccccCCC
Q 024050 38 VSEEDGISMIKHAFSKGITFFDTADVYG 65 (273)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gin~~DtA~~Yg 65 (273)
.+.+.+.+....+++.|++.||.+..|.
T Consensus 74 ~~~~~~~~~~~~~~~~g~~ViD~s~~~R 101 (121)
T PF01118_consen 74 LPHGASKELAPKLLKAGIKVIDLSGDFR 101 (121)
T ss_dssp SCHHHHHHHHHHHHHTTSEEEESSSTTT
T ss_pred CchhHHHHHHHHHhhCCcEEEeCCHHHh
Confidence 3678889999999999999999999995
No 219
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=34.82 E-value=2.2e+02 Score=22.22 Aligned_cols=81 Identities=16% Similarity=0.160 Sum_probs=57.1
Q ss_pred cCCHHHHHHHHHHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHc--CCccEEecCCCCHHHHHHHhhcCCceEE
Q 024050 104 KGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEE--GKIKYIGLSEASPGTIRRAHAVHPITAV 181 (273)
Q Consensus 104 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~--G~ir~iGvS~~~~~~l~~~~~~~~~~~~ 181 (273)
..+.+.|.+.+++.-+.+|+ .++.+|=. .-.+.++++++..+. |.|-.=|--++..-.|.+++......++
T Consensus 25 ~~tl~~i~~~~~~~a~~~g~-~~~~~QSN------~EGelId~i~~a~~~~dgiIINpga~THtSiAl~DAl~~~~~P~V 97 (146)
T PRK13015 25 HETLADVEALCRAAAEALGL-EVEFRQSN------HEGELIDWIHEARGDVAGIVINPGAYTHTSVAIRDALAALELPVI 97 (146)
T ss_pred CCCHHHHHHHHHHHHHHcCC-EEEEEeeC------cHHHHHHHHHHhhhcCCEEEEcchHHhhhHHHHHHHHHcCCCCEE
Confidence 35688899999999999996 46666632 235778888887542 4444445455666678888888777788
Q ss_pred eeeccccccc
Q 024050 182 QMEWSLWTRD 191 (273)
Q Consensus 182 q~~~~l~~~~ 191 (273)
.++.|-.+.+
T Consensus 98 EVHiSNi~aR 107 (146)
T PRK13015 98 EVHISNVHAR 107 (146)
T ss_pred EEEcCCcccc
Confidence 8888776654
No 220
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=34.79 E-value=1.5e+02 Score=26.78 Aligned_cols=90 Identities=10% Similarity=0.072 Sum_probs=58.3
Q ss_pred EEEecCCCCC-----------CCHHHHHHHHHHHHHcCC----ccEEecC--CCCHHHHHHHhh---cCCceEEeeeccc
Q 024050 128 LYYQHRVDTS-----------VPIEETIGEMKKLVEEGK----IKYIGLS--EASPGTIRRAHA---VHPITAVQMEWSL 187 (273)
Q Consensus 128 l~~lh~~~~~-----------~~~~~~~~~L~~l~~~G~----ir~iGvS--~~~~~~l~~~~~---~~~~~~~q~~~~l 187 (273)
.+-||.+++. .+++++++++.++.+.+. ++++=+. |.+.+.++++.+ ..+..++-++||.
T Consensus 222 aiSL~a~~~e~r~~l~pi~~~~~l~~Il~~l~~~~~~~~~~v~iey~lI~gvNDs~ed~~~La~ll~~l~~~VnLIPynp 301 (356)
T PRK14455 222 AISLHAPNNELRSSLMPINRAYPLEKLMEAIEYYIEKTNRRVTFEYILLGGVNDQVEHAEELADLLKGIKCHVNLIPVNP 301 (356)
T ss_pred EeccCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCcEEEEecCc
Confidence 3778888753 235889999998877542 4455443 344555555544 3445677789998
Q ss_pred cccc-----cc---ccHHHHHHHhCCeEEecccCCCcc
Q 024050 188 WTRD-----IE---EEIIPLCRELGIGIVPYSPLGRGF 217 (273)
Q Consensus 188 ~~~~-----~~---~~l~~~~~~~gi~v~a~spl~~G~ 217 (273)
+... .. ....+.++++|+.+......+..+
T Consensus 302 ~~~~ky~~ps~e~l~~f~~~L~~~gi~v~ir~~~g~di 339 (356)
T PRK14455 302 VPERDYVRTPKEDIFAFEDTLKKNGVNCTIRREHGTDI 339 (356)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHCCCcEEEeCCCCcch
Confidence 7631 11 456667889999999887776544
No 221
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=34.66 E-value=3.5e+02 Score=24.44 Aligned_cols=173 Identities=16% Similarity=0.134 Sum_probs=87.3
Q ss_pred CCCCHHHHHHHHHHHHHCCCCccccccCCCC------CcHHHHHHHHHhcCCCCCEEEEeccCcCCCC-------Ccc--
Q 024050 36 SPVSEEDGISMIKHAFSKGITFFDTADVYGQ------NANEVLLGKALKQLPREKIQVATKFGIAGIG-------VAG-- 100 (273)
Q Consensus 36 ~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~------g~se~~lg~~l~~~~r~~~~i~tK~~~~~~~-------~~~-- 100 (273)
..++.++-.++++...+.|++.|+....-.+ ++.++.+- .++....-.+.... . +..+ ...
T Consensus 63 ~~~s~e~Ki~ia~~L~~~GV~~IEvGs~vspk~vPqmad~~ev~~-~i~~~~~~~~~~l~--~-n~~die~A~~~g~~~v 138 (347)
T PLN02746 63 NIVPTSVKVELIQRLVSSGLPVVEATSFVSPKWVPQLADAKDVMA-AVRNLEGARFPVLT--P-NLKGFEAAIAAGAKEV 138 (347)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEECCCcCcccccccccHHHHHH-HHHhccCCceeEEc--C-CHHHHHHHHHcCcCEE
Confidence 3468899999999999999999998854432 23444443 33322222221111 1 1100 000
Q ss_pred -c-----------cccCCHHHHHHHHHHHHHHc---CCCcccEEE---ecCCCC-CCCHHHHHHHHHHHHHcCCccEEec
Q 024050 101 -V-----------IVKGAPDYVRSCCEASLKRL---DVDYIDLYY---QHRVDT-SVPIEETIGEMKKLVEEGKIKYIGL 161 (273)
Q Consensus 101 -~-----------~~~~~~~~i~~~~~~sL~~L---~~d~iDl~~---lh~~~~-~~~~~~~~~~L~~l~~~G~ir~iGv 161 (273)
. ....+++.+.+.+.+..+.. | -++..++ +-.|+. ..+.+.+++..+++.+.| +..|.+
T Consensus 139 ~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~G-l~v~~~is~~fg~p~~~r~~~~~l~~~~~~~~~~G-ad~I~l 216 (347)
T PLN02746 139 AVFASASESFSKSNINCSIEESLVRYREVALAAKKHS-IPVRGYVSCVVGCPIEGPVPPSKVAYVAKELYDMG-CYEISL 216 (347)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-CeEEEEEEeeecCCccCCCCHHHHHHHHHHHHHcC-CCEEEe
Confidence 0 01234444444444444433 3 2343333 334433 246777888888888888 566888
Q ss_pred CC----CCHHHHHHHhhcC--CceEEeeeccccccccc-ccHHHHHHHhCCeEEecccCC
Q 024050 162 SE----ASPGTIRRAHAVH--PITAVQMEWSLWTRDIE-EEIIPLCRELGIGIVPYSPLG 214 (273)
Q Consensus 162 S~----~~~~~l~~~~~~~--~~~~~q~~~~l~~~~~~-~~l~~~~~~~gi~v~a~spl~ 214 (273)
+. .+|.++.++++.. .+....+.+|.-+..-. ..-.=.|-+.|+..+--+..+
T Consensus 217 ~DT~G~a~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~GlA~AN~lAA~~aGa~~vd~sv~G 276 (347)
T PLN02746 217 GDTIGVGTPGTVVPMLEAVMAVVPVDKLAVHFHDTYGQALANILVSLQMGISTVDSSVAG 276 (347)
T ss_pred cCCcCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCCChHHHHHHHHHHhCCCEEEEeccc
Confidence 76 3566665554431 11112344444333210 112223457788877544443
No 222
>PTZ00081 enolase; Provisional
Probab=34.65 E-value=3.5e+02 Score=25.27 Aligned_cols=97 Identities=14% Similarity=0.102 Sum_probs=64.9
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcC--CccEEec--CCCCHHHHHHHhhcCCceE
Q 024050 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEG--KIKYIGL--SEASPGTIRRAHAVHPITA 180 (273)
Q Consensus 105 ~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G--~ir~iGv--S~~~~~~l~~~~~~~~~~~ 180 (273)
.+++.+.+-+.+.++.++ ++++..|-.. +-|+.+.+|.++= .+.-+|= +..+++.+.+.++....++
T Consensus 281 ~s~~eli~~~~~~l~~y~-----I~~IEDPl~~----~D~eg~~~Lt~~lg~~i~IvgDE~~~tn~~~l~~~I~~~aad~ 351 (439)
T PTZ00081 281 LTGEELVELYLDLVKKYP-----IVSIEDPFDQ----DDWEAYAKLTAAIGQKVQIVGDDLLVTNPTRIKKAIEKKACNA 351 (439)
T ss_pred cCHHHHHHHHHHHHhcCC-----cEEEEcCCCc----ccHHHHHHHHHhhCCCceEEcCCcccCCHHHHHHHHHhCCCCE
Confidence 466666666666666554 5677766442 3456666666543 4543333 2356889999998888888
Q ss_pred Eeeeccccccccc-ccHHHHHHHhCCeEEec
Q 024050 181 VQMEWSLWTRDIE-EEIIPLCRELGIGIVPY 210 (273)
Q Consensus 181 ~q~~~~l~~~~~~-~~l~~~~~~~gi~v~a~ 210 (273)
+|+..|-.---.+ .+++..|+++|+.++..
T Consensus 352 i~iKvnqiGGITe~l~~a~lA~~~Gi~~iis 382 (439)
T PTZ00081 352 LLLKVNQIGTVTEAIEAAKLAQKNGWGVMVS 382 (439)
T ss_pred EEeccccccCHHHHHHHHHHHHHcCCcEEEe
Confidence 8888875542212 67899999999998873
No 223
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=34.61 E-value=3.1e+02 Score=25.08 Aligned_cols=41 Identities=7% Similarity=0.114 Sum_probs=30.6
Q ss_pred CcceeccccCCC----CCCCC-CCHHHHHHHHHHHHHCCCCccccc
Q 024050 21 SKLGYGCMNLSG----GYSSP-VSEEDGISMIKHAFSKGITFFDTA 61 (273)
Q Consensus 21 s~lglG~~~~~~----~~~~~-~~~~~~~~~l~~A~~~Gin~~DtA 61 (273)
.+.+||.|.+|+ .||.. .+..+..+.++.+-+.|+..+...
T Consensus 7 ~~f~~~~w~~~~~~~~~~g~~~~~~~~~~e~i~~la~~GfdgVE~~ 52 (382)
T TIGR02631 7 DRFTFGLWTVGWVGRDPFGDATRTALDPVEAVHKLAELGAYGVTFH 52 (382)
T ss_pred CceEEEeeccCCCCCCCCCCCCCCCcCHHHHHHHHHHhCCCEEEec
Confidence 468999999986 24443 345577889999999999887654
No 224
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=34.40 E-value=4.1e+02 Score=25.14 Aligned_cols=112 Identities=12% Similarity=0.068 Sum_probs=62.6
Q ss_pred CHHHHHHHHHHHHHCCCCccccccCCCCCcHHHHHHHHHhc-CCCCCEEEEeccCcCCCCCccccccCCHHHHHHHHHHH
Q 024050 39 SEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ-LPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEAS 117 (273)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~se~~lg~~l~~-~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~s 117 (273)
+++-....++.|.++||..|=..++-..-++-+..-++.++ ...-.+.|+-... +.++.+.+.+.+++
T Consensus 103 pddvv~~fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~~~~~~i~yt~s----------p~~t~~y~~~~a~~- 171 (468)
T PRK12581 103 ADDIVDKFISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEAQLCIAYTTS----------PVHTLNYYLSLVKE- 171 (468)
T ss_pred cchHHHHHHHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCCEEEEEEEEEeC----------CcCcHHHHHHHHHH-
Confidence 45667788999999999766665554422233333334443 2111122332221 23456777776666
Q ss_pred HHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEecCCCC
Q 024050 118 LKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEAS 165 (273)
Q Consensus 118 L~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~ 165 (273)
++.+|. |.+.|-+.-......++.+.+..+++...+ -||+=.|+
T Consensus 172 l~~~Ga---d~I~IkDtaG~l~P~~v~~Lv~alk~~~~~-pi~~H~Hn 215 (468)
T PRK12581 172 LVEMGA---DSICIKDMAGILTPKAAKELVSGIKAMTNL-PLIVHTHA 215 (468)
T ss_pred HHHcCC---CEEEECCCCCCcCHHHHHHHHHHHHhccCC-eEEEEeCC
Confidence 456775 556666554445556666666777665443 47775554
No 225
>PRK15108 biotin synthase; Provisional
Probab=34.22 E-value=3.5e+02 Score=24.28 Aligned_cols=106 Identities=10% Similarity=0.022 Sum_probs=58.5
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEecCCCC-CCCHHHHHHHHHHHHHcCCccEEecCC--CCHHHHHHHhhcC-C---
Q 024050 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDT-SVPIEETIGEMKKLVEEGKIKYIGLSE--ASPGTIRRAHAVH-P--- 177 (273)
Q Consensus 105 ~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~-~~~~~~~~~~L~~l~~~G~ir~iGvS~--~~~~~l~~~~~~~-~--- 177 (273)
.+++.|.+.++. ...+|++.+-+ ...+.++ ...++.+.+.+..+++.|. .+.+|+ .+.+.++++.+.. .
T Consensus 76 ls~eEI~~~a~~-~~~~G~~~i~i-~~~g~~p~~~~~e~i~~~i~~ik~~~i--~v~~s~G~ls~e~l~~LkeAGld~~n 151 (345)
T PRK15108 76 MEVEQVLESARK-AKAAGSTRFCM-GAAWKNPHERDMPYLEQMVQGVKAMGL--ETCMTLGTLSESQAQRLANAGLDYYN 151 (345)
T ss_pred CCHHHHHHHHHH-HHHcCCCEEEE-EecCCCCCcchHHHHHHHHHHHHhCCC--EEEEeCCcCCHHHHHHHHHcCCCEEe
Confidence 578888888775 55689988833 3332222 2345666677777777664 344555 5677777776552 1
Q ss_pred --ceEEeeecccc-c-ccc--cccHHHHHHHhCCeEEecccCC
Q 024050 178 --ITAVQMEWSLW-T-RDI--EEEIIPLCRELGIGIVPYSPLG 214 (273)
Q Consensus 178 --~~~~q~~~~l~-~-~~~--~~~l~~~~~~~gi~v~a~spl~ 214 (273)
++...--|.-+ . ... .-+.++.+++.|+.+-+-..++
T Consensus 152 ~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i~G 194 (345)
T PRK15108 152 HNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVG 194 (345)
T ss_pred eccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeEEEEe
Confidence 11111111111 1 111 1557777778887665444444
No 226
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=34.04 E-value=3.4e+02 Score=24.37 Aligned_cols=133 Identities=17% Similarity=0.210 Sum_probs=76.5
Q ss_pred CCHHHHHHHHHHHHHCC-CCccccccCCCCCcHHHHHHHHHhcCC-CCCEEEEeccCcCCCCCccccccCCHHHHHHHHH
Q 024050 38 VSEEDGISMIKHAFSKG-ITFFDTADVYGQNANEVLLGKALKQLP-REKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCE 115 (273)
Q Consensus 38 ~~~~~~~~~l~~A~~~G-in~~DtA~~Yg~g~se~~lg~~l~~~~-r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (273)
.+.++..+.-+.|-+.| .+|...|..++.|+.-..+-+.++.++ --.+-++.-+| ..+.+..+
T Consensus 84 ~~~eeIle~Ak~ak~~Ga~r~c~~aagr~~~~~~~~i~~~v~~Vk~~~~le~c~slG-----------~l~~eq~~---- 148 (335)
T COG0502 84 MEVEEILEAAKKAKAAGATRFCMGAAGRGPGRDMEEVVEAIKAVKEELGLEVCASLG-----------MLTEEQAE---- 148 (335)
T ss_pred CCHHHHHHHHHHHHHcCCceEEEEEeccCCCccHHHHHHHHHHHHHhcCcHHhhccC-----------CCCHHHHH----
Confidence 56788888888888999 889999988873344444555555322 11222222222 12343333
Q ss_pred HHHHHcCCCcccEEEecCCCC----------CCCHHHHHHHHHHHHHcCCccE----EecCCCCHHHHHHHhhcCCce-E
Q 024050 116 ASLKRLDVDYIDLYYQHRVDT----------SVPIEETIGEMKKLVEEGKIKY----IGLSEASPGTIRRAHAVHPIT-A 180 (273)
Q Consensus 116 ~sL~~L~~d~iDl~~lh~~~~----------~~~~~~~~~~L~~l~~~G~ir~----iGvS~~~~~~l~~~~~~~~~~-~ 180 (273)
-|+.-|+|+. -|+.+. ....++-++.++.+++.|.=-. +|+-+-..+.++-+..+.... .
T Consensus 149 -~L~~aGvd~y----nhNLeTs~~~y~~I~tt~t~edR~~tl~~vk~~Gi~vcsGgI~GlGEs~eDri~~l~~L~~l~~p 223 (335)
T COG0502 149 -KLADAGVDRY----NHNLETSPEFYENIITTRTYEDRLNTLENVREAGIEVCSGGIVGLGETVEDRAELLLELANLPTP 223 (335)
T ss_pred -HHHHcChhhe----ecccccCHHHHcccCCCCCHHHHHHHHHHHHHcCCccccceEecCCCCHHHHHHHHHHHHhCCCC
Confidence 3555665542 365544 2346889999999999997433 344444444455444442222 4
Q ss_pred Eeeecccccc
Q 024050 181 VQMEWSLWTR 190 (273)
Q Consensus 181 ~q~~~~l~~~ 190 (273)
-.++.|.+.+
T Consensus 224 dsVPIn~l~P 233 (335)
T COG0502 224 DSVPINFLNP 233 (335)
T ss_pred CeeeeeeecC
Confidence 4556666554
No 227
>PRK15108 biotin synthase; Provisional
Probab=33.64 E-value=3.5e+02 Score=24.22 Aligned_cols=105 Identities=13% Similarity=0.177 Sum_probs=56.6
Q ss_pred CCHHHHHHHHHHHHHCCCCccccccCC-CC-CcHHHHHHHHHhcCCCCCEEEEeccCcCCCCCccccccCCHHHHHHHHH
Q 024050 38 VSEEDGISMIKHAFSKGITFFDTADVY-GQ-NANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCE 115 (273)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gin~~DtA~~Y-g~-g~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (273)
++.++..+..+.+.+.|++-|-..... ++ ...-+.+.+.++..+...+.++.-.+. .+.+ .-
T Consensus 76 ls~eEI~~~a~~~~~~G~~~i~i~~~g~~p~~~~~e~i~~~i~~ik~~~i~v~~s~G~-----------ls~e-----~l 139 (345)
T PRK15108 76 MEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMGLETCMTLGT-----------LSES-----QA 139 (345)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecCCCCCcchHHHHHHHHHHHHhCCCEEEEeCCc-----------CCHH-----HH
Confidence 678999999999999999977443221 21 122245555665433222333221221 2222 22
Q ss_pred HHHHHcCCCcccEEEecCC------CCCCCHHHHHHHHHHHHHcCCccE
Q 024050 116 ASLKRLDVDYIDLYYQHRV------DTSVPIEETIGEMKKLVEEGKIKY 158 (273)
Q Consensus 116 ~sL~~L~~d~iDl~~lh~~------~~~~~~~~~~~~L~~l~~~G~ir~ 158 (273)
+-|+..|+|++.+-+=-.| -.....++.++.++.+++.|.--.
T Consensus 140 ~~LkeAGld~~n~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~ 188 (345)
T PRK15108 140 QRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVC 188 (345)
T ss_pred HHHHHcCCCEEeeccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCcee
Confidence 3355667665433210111 012346789999999999997433
No 228
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=33.53 E-value=1e+02 Score=27.53 Aligned_cols=146 Identities=19% Similarity=0.196 Sum_probs=80.6
Q ss_pred CCcccCCCCCcccCcceeccccCCCCCCCCCCHHHHHHHHHHHHHCCCC--ccccccCCCCCcHHHHHHHHHhcCCCCCE
Q 024050 8 VPRVKLGTQGLEVSKLGYGCMNLSGGYSSPVSEEDGISMIKHAFSKGIT--FFDTADVYGQNANEVLLGKALKQLPREKI 85 (273)
Q Consensus 8 m~~r~lg~sg~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin--~~DtA~~Yg~g~se~~lg~~l~~~~r~~~ 85 (273)
|++..++ .|..|-..|+|. +|. -.++.|-..|.+ .||+++. ..|+ +++...-+.+
T Consensus 174 Lk~~g~~-pG~~vgI~GlGG--LGh------------~aVq~AKAMG~rV~vis~~~~----kkee----a~~~LGAd~f 230 (360)
T KOG0023|consen 174 LKRSGLG-PGKWVGIVGLGG--LGH------------MAVQYAKAMGMRVTVISTSSK----KKEE----AIKSLGADVF 230 (360)
T ss_pred hHHcCCC-CCcEEEEecCcc--cch------------HHHHHHHHhCcEEEEEeCCch----hHHH----HHHhcCccee
Confidence 5556664 677777788776 432 256677777765 5666542 2444 3443334555
Q ss_pred EEEeccCcCCCCCccccccCCHHHHHHHHHHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEecCCCC
Q 024050 86 QVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEAS 165 (273)
Q Consensus 86 ~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~ 165 (273)
+++++- + .+.+++..++.- +++.+--+ ... ..-..+.-|+..|++-.+|+-+..
T Consensus 231 v~~~~d---------------~-d~~~~~~~~~dg-~~~~v~~~------a~~---~~~~~~~~lk~~Gt~V~vg~p~~~ 284 (360)
T KOG0023|consen 231 VDSTED---------------P-DIMKAIMKTTDG-GIDTVSNL------AEH---ALEPLLGLLKVNGTLVLVGLPEKP 284 (360)
T ss_pred EEecCC---------------H-HHHHHHHHhhcC-cceeeeec------ccc---chHHHHHHhhcCCEEEEEeCcCCc
Confidence 555541 2 234445544432 22222222 111 233456778999999999998753
Q ss_pred HHHHHHHhhcCC--ceEEeeeccccccccc-ccHHHHHHHhCCeE
Q 024050 166 PGTIRRAHAVHP--ITAVQMEWSLWTRDIE-EEIIPLCRELGIGI 207 (273)
Q Consensus 166 ~~~l~~~~~~~~--~~~~q~~~~l~~~~~~-~~l~~~~~~~gi~v 207 (273)
.. +...+ +--..+..|..-...+ ++++++|.+++|..
T Consensus 285 ~~-----~~~~~lil~~~~I~GS~vG~~ket~E~Ldf~a~~~ik~ 324 (360)
T KOG0023|consen 285 LK-----LDTFPLILGRKSIKGSIVGSRKETQEALDFVARGLIKS 324 (360)
T ss_pred cc-----ccchhhhcccEEEEeeccccHHHHHHHHHHHHcCCCcC
Confidence 21 11111 1223445555554434 88999999987653
No 229
>cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=33.37 E-value=2.8e+02 Score=23.02 Aligned_cols=23 Identities=17% Similarity=0.514 Sum_probs=18.8
Q ss_pred CHHHHHHHHHHHHHCCCCccccc
Q 024050 39 SEEDGISMIKHAFSKGITFFDTA 61 (273)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~DtA 61 (273)
-+|.....++.|++.|+..|.+-
T Consensus 13 ~pENTl~Af~~A~~~G~d~iE~D 35 (237)
T cd08583 13 TYTNSLDAFEHNYKKGYRVFEVD 35 (237)
T ss_pred CCccHHHHHHHHHHhCCCEEEEE
Confidence 36888999999999999877654
No 230
>PLN02775 Probable dihydrodipicolinate reductase
Probab=33.30 E-value=3e+02 Score=24.13 Aligned_cols=58 Identities=12% Similarity=0.118 Sum_probs=41.2
Q ss_pred HHHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEecCCCCHHHHHHHhhc
Q 024050 114 CEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAV 175 (273)
Q Consensus 114 ~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~ 175 (273)
+++.|..+.-+|.|++.+..- ..+.+.+.+..+.+.|+--=+|.+.|+.++++++.+.
T Consensus 68 l~~~l~~~~~~~~~~VvIDFT----~P~a~~~~~~~~~~~g~~~VvGTTG~~~e~l~~~~~~ 125 (286)
T PLN02775 68 REAVLSSVKAEYPNLIVVDYT----LPDAVNDNAELYCKNGLPFVMGTTGGDRDRLLKDVEE 125 (286)
T ss_pred HHHHHHHhhccCCCEEEEECC----ChHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHhc
Confidence 334444443457887777653 3466778888888889888889999998888776654
No 231
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=33.14 E-value=2.3e+02 Score=24.47 Aligned_cols=100 Identities=12% Similarity=0.045 Sum_probs=49.3
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEecCCCC--------CCCHHHHHHHHHHHHHcCCccE-------EecCCCCH---
Q 024050 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDT--------SVPIEETIGEMKKLVEEGKIKY-------IGLSEASP--- 166 (273)
Q Consensus 105 ~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~--------~~~~~~~~~~L~~l~~~G~ir~-------iGvS~~~~--- 166 (273)
++.+... .+-..|.++|+++|++-. |.. .....+.++.+.++...-++.. +|++.++.
T Consensus 18 ~~~~~~~-~ia~~L~~~Gv~~iE~G~---~a~~~~~~~~~~~~~~e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p~~~~ 93 (275)
T cd07937 18 MRTEDML-PIAEALDEAGFFSLEVWG---GATFDVCMRFLNEDPWERLRELRKAMPNTPLQMLLRGQNLVGYRHYPDDVV 93 (275)
T ss_pred ccHHHHH-HHHHHHHHcCCCEEEccC---CcchhhhccccCCCHHHHHHHHHHhCCCCceehhcccccccCccCCCcHHH
Confidence 3444443 357889999999998873 221 1222333444443322222222 23333333
Q ss_pred -HHHHHHhhcCCceEEeeecccccccccccHHHHHHHhCCeEEe
Q 024050 167 -GTIRRAHAVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVP 209 (273)
Q Consensus 167 -~~l~~~~~~~~~~~~q~~~~l~~~~~~~~l~~~~~~~gi~v~a 209 (273)
+.++.+.+. .++.+-+-..+-+-+.-.+.+++++++|+.+..
T Consensus 94 ~~di~~~~~~-g~~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~ 136 (275)
T cd07937 94 ELFVEKAAKN-GIDIFRIFDALNDVRNLEVAIKAVKKAGKHVEG 136 (275)
T ss_pred HHHHHHHHHc-CCCEEEEeecCChHHHHHHHHHHHHHCCCeEEE
Confidence 233343333 234444433322222126788999999987765
No 232
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=32.93 E-value=2.8e+02 Score=26.24 Aligned_cols=47 Identities=6% Similarity=0.072 Sum_probs=30.8
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcC
Q 024050 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEG 154 (273)
Q Consensus 105 ~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G 154 (273)
.+++.|.+.++...++.|+..+ .+.+.+...+...+.+.++++++.|
T Consensus 222 rs~e~Vv~Ei~~l~~~~gv~~~---~~~Dd~f~~~~~~~~~l~~~l~~~~ 268 (497)
T TIGR02026 222 RDPKKFVDEIEWLVRTHGVGFF---ILADEEPTINRKKFQEFCEEIIARN 268 (497)
T ss_pred CCHHHHHHHHHHHHHHcCCCEE---EEEecccccCHHHHHHHHHHHHhcC
Confidence 4788999999998888886554 3333322233445566667777776
No 233
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=32.79 E-value=3.1e+02 Score=24.67 Aligned_cols=27 Identities=7% Similarity=0.025 Sum_probs=18.9
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEec
Q 024050 105 GAPDYVRSCCEASLKRLDVDYIDLYYQH 132 (273)
Q Consensus 105 ~~~~~i~~~~~~sL~~L~~d~iDl~~lh 132 (273)
.+.+.+++.++.. .+++.+++.+|.+-
T Consensus 167 qt~e~~~~tl~~~-~~l~p~~is~y~L~ 193 (353)
T PRK05904 167 LKLKDLDEVFNFI-LKHKINHISFYSLE 193 (353)
T ss_pred CCHHHHHHHHHHH-HhcCCCEEEEEeeE
Confidence 4567777777744 45888888888775
No 234
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=32.70 E-value=3.1e+02 Score=24.52 Aligned_cols=123 Identities=14% Similarity=0.094 Sum_probs=62.4
Q ss_pred HhcCCCCCEEEEeccCcCCCCCccccccCCHHHHHHHHHHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCc
Q 024050 77 LKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKI 156 (273)
Q Consensus 77 l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~i 156 (273)
+....|+++=++|++.......+=..-.-+ ..+.+++-+..++.| -+..+|.. +.++......+.+..|++
T Consensus 17 lp~~s~~dvdlst~~~~~~l~~P~~inAM~-t~iN~~LA~~a~~~G----~~~~~~k~----~~e~~~~~~r~~~~~~l~ 87 (326)
T PRK05458 17 CIVNSRSECDTSVTLGPRTFKLPVVPANMQ-TIIDEKIAEWLAENG----YFYIMHRF----DPEARIPFIKDMHEQGLI 87 (326)
T ss_pred CCCCCHHHcccceEECCcEecCcEEEeccc-chhHHHHHHHHHHcC----CEEEEecC----CHHHHHHHHHhccccccE
Confidence 333567888888887633211000000112 278888888888887 46677772 234444444555555675
Q ss_pred cEEecCCCCHH---HHHHHhhcC-CceEEeeecccccccccccHHHHHHHh--CCeEEe
Q 024050 157 KYIGLSEASPG---TIRRAHAVH-PITAVQMEWSLWTRDIEEEIIPLCREL--GIGIVP 209 (273)
Q Consensus 157 r~iGvS~~~~~---~l~~~~~~~-~~~~~q~~~~l~~~~~~~~l~~~~~~~--gi~v~a 209 (273)
-.++++. +++ .+.++++.. .++++++....-+-+...++++..+++ ++.|++
T Consensus 88 v~~~vg~-~~~~~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~ 145 (326)
T PRK05458 88 ASISVGV-KDDEYDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIA 145 (326)
T ss_pred EEEEecC-CHHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEE
Confidence 5444443 233 344444432 246777754443322224455555543 344444
No 235
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=32.49 E-value=4e+02 Score=24.52 Aligned_cols=96 Identities=16% Similarity=0.138 Sum_probs=61.5
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcC--CccEEecC--CCCHHHHHHHhhcCCceE
Q 024050 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEG--KIKYIGLS--EASPGTIRRAHAVHPITA 180 (273)
Q Consensus 105 ~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G--~ir~iGvS--~~~~~~l~~~~~~~~~~~ 180 (273)
++++...+-+.+.++. .+++++..|-...+ |+.+.+|.+.- .+.-+|=- .+++..+.++++....++
T Consensus 261 ~t~~eai~~~~~l~e~-----~~i~~iEdPl~~~D----~eg~~~L~~~~g~~ipi~gdE~~~~~~~~~~~~i~~~a~d~ 331 (408)
T cd03313 261 LTSEELIDYYKELVKK-----YPIVSIEDPFDEDD----WEGWAKLTAKLGDKIQIVGDDLFVTNPERLKKGIEKKAANA 331 (408)
T ss_pred cCHHHHHHHHHHHHHh-----CCcEEEEeCCCCcC----HHHHHHHHHhcCCCCeEEcCCcccCCHHHHHHHHHhCCCCE
Confidence 4555555555555544 45777887755443 55666666663 34322221 247889999998888888
Q ss_pred Eeeeccccccccc-ccHHHHHHHhCCeEEe
Q 024050 181 VQMEWSLWTRDIE-EEIIPLCRELGIGIVP 209 (273)
Q Consensus 181 ~q~~~~l~~~~~~-~~l~~~~~~~gi~v~a 209 (273)
+|+..+-.---.+ .++...|+++|+.++.
T Consensus 332 v~ik~~~iGGite~~~ia~lA~~~G~~~~~ 361 (408)
T cd03313 332 LLIKVNQIGTLTETIEAIKLAKKNGYGVVV 361 (408)
T ss_pred EEEcccccCCHHHHHHHHHHHHHcCCeEEc
Confidence 8887776442212 6788999999999875
No 236
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=32.40 E-value=2.2e+02 Score=26.02 Aligned_cols=95 Identities=14% Similarity=0.107 Sum_probs=58.9
Q ss_pred CCCEEEEeccCcCCC------CCccccccCCHHHHHHHHHHHHHHcCC-------------CcccEEEecCCC-CCCCHH
Q 024050 82 REKIQVATKFGIAGI------GVAGVIVKGAPDYVRSCCEASLKRLDV-------------DYIDLYYQHRVD-TSVPIE 141 (273)
Q Consensus 82 r~~~~i~tK~~~~~~------~~~~~~~~~~~~~i~~~~~~sL~~L~~-------------d~iDl~~lh~~~-~~~~~~ 141 (273)
|..+.|+|-+|.... +..+...++++..|..|+....+.|+. ..+.=+.+-... +....+
T Consensus 106 r~TlCvSSQvGC~mgC~FCaTG~~G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~i~NIVfMGMGEPL~Nyd 185 (371)
T PRK14461 106 RATVCVSTQAGCGMGCVFCATGTLGLLRNLSSGEIVAQVIWASRELRAMGAAISKRHAGPVGRVTNLVFMGMGEPFANYD 185 (371)
T ss_pred CceEEEEccCCccCCCCcccCCCCCcccCCCHHHHHHHHHHHHHHhhhcccccccccccccCceeeEEEEccCCchhhHH
Confidence 666777777765541 223456688999999999888776642 123333333332 223357
Q ss_pred HHHHHHHHHHHc-CC---ccEEecCCCCH-HHHHHHhhcC
Q 024050 142 ETIGEMKKLVEE-GK---IKYIGLSEASP-GTIRRAHAVH 176 (273)
Q Consensus 142 ~~~~~L~~l~~~-G~---ir~iGvS~~~~-~~l~~~~~~~ 176 (273)
.+++++.-|.+. |. -|+|=||+... ..|+++.+..
T Consensus 186 nV~~ai~il~d~~g~~is~R~ITVST~Givp~I~~la~~~ 225 (371)
T PRK14461 186 RWWQAVERLHDPQGFNLGARSMTVSTVGLVKGIRRLANER 225 (371)
T ss_pred HHHHHHHHhcCccccCcCCCceEEEeecchhHHHHHHhcc
Confidence 788999888765 22 45677777654 4577776644
No 237
>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=32.26 E-value=3.7e+02 Score=24.03 Aligned_cols=88 Identities=16% Similarity=0.141 Sum_probs=55.4
Q ss_pred EEEecCCCCC-----------CCHHHHHHHHHHHHHc-CC---ccEEecC--CCCHHHHHHHhhc---CCceEEeeeccc
Q 024050 128 LYYQHRVDTS-----------VPIEETIGEMKKLVEE-GK---IKYIGLS--EASPGTIRRAHAV---HPITAVQMEWSL 187 (273)
Q Consensus 128 l~~lh~~~~~-----------~~~~~~~~~L~~l~~~-G~---ir~iGvS--~~~~~~l~~~~~~---~~~~~~q~~~~l 187 (273)
.+.||.+++. .+++++++++.++.+. +. ++++=+. |.+.+.++++.+. .+..++-++||.
T Consensus 211 aiSL~a~~~e~r~~i~p~~~~~~l~~Il~~l~~~~~~~~~~v~i~yvlI~g~NDs~ed~~~La~llk~~~~~VnLIpynp 290 (343)
T PRK14469 211 ALSLHAPTNFKRDQIVPLNKKYSIEEIINAVKIYQKKTGNRVTIEYILIKGFNDEIEDAKKLAELLKGLKVFVNLIPVNP 290 (343)
T ss_pred EEEeCCCCHHHHHhhcCcCCCCCHHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhccCcEEEEEecCC
Confidence 3677888653 2467888988877765 43 4555554 4455555555443 445667779998
Q ss_pred ccccc---c----ccHHHHHHHhCCeEEecccCCC
Q 024050 188 WTRDI---E----EEIIPLCRELGIGIVPYSPLGR 215 (273)
Q Consensus 188 ~~~~~---~----~~l~~~~~~~gi~v~a~spl~~ 215 (273)
..... . ..+.+..+++|+.+..+...+.
T Consensus 291 ~~~~~~~ps~e~l~~f~~~l~~~gi~vtvr~~~g~ 325 (343)
T PRK14469 291 TVPGLEKPSRERIERFKEILLKNGIEAEIRREKGS 325 (343)
T ss_pred CCccCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCc
Confidence 65321 1 3456667778999988765553
No 238
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=32.23 E-value=3.6e+02 Score=23.89 Aligned_cols=80 Identities=20% Similarity=0.230 Sum_probs=52.8
Q ss_pred CCCCCEEEEeccCcCCCCCccccccCCHHHHHHHHHHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCccEE
Q 024050 80 LPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYI 159 (273)
Q Consensus 80 ~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~i 159 (273)
..++.+.++.|..... + ...+.+.+++..+.+| +++.+ ..+.. .+.....+.++.+..+| +..|
T Consensus 21 ~~~~~i~~v~k~~~~p---------f-~~~~~~Gi~~aa~~~G---~~v~~-~~~~~-~d~~~q~~~i~~li~~~-vdgI 84 (336)
T PRK15408 21 QAAERIAFIPKLVGVG---------F-FTSGGNGAKEAGKELG---VDVTY-DGPTE-PSVSGQVQLINNFVNQG-YNAI 84 (336)
T ss_pred cCCcEEEEEECCCCCH---------H-HHHHHHHHHHHHHHhC---CEEEE-ECCCC-CCHHHHHHHHHHHHHcC-CCEE
Confidence 3466788888865332 1 4567888899999998 45543 33432 34556678888888876 7888
Q ss_pred ecCCCCHH----HHHHHhhc
Q 024050 160 GLSEASPG----TIRRAHAV 175 (273)
Q Consensus 160 GvS~~~~~----~l~~~~~~ 175 (273)
-++..+++ .++++.+.
T Consensus 85 iv~~~d~~al~~~l~~a~~~ 104 (336)
T PRK15408 85 IVSAVSPDGLCPALKRAMQR 104 (336)
T ss_pred EEecCCHHHHHHHHHHHHHC
Confidence 88876654 44454444
No 239
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=32.10 E-value=5.4e+02 Score=25.89 Aligned_cols=159 Identities=13% Similarity=0.104 Sum_probs=82.6
Q ss_pred CCCHHHHHHHH-------HHHHHCCCCccccccCCC------------------CCcHH---HH---HHHHHhcCCCCCE
Q 024050 37 PVSEEDGISMI-------KHAFSKGITFFDTADVYG------------------QNANE---VL---LGKALKQLPREKI 85 (273)
Q Consensus 37 ~~~~~~~~~~l-------~~A~~~Gin~~DtA~~Yg------------------~g~se---~~---lg~~l~~~~r~~~ 85 (273)
.++.+|..+++ +.|.++|+..||.-...| .|.-| ++ +-+++++.-..++
T Consensus 540 ~mt~~eI~~~i~~f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~ 619 (765)
T PRK08255 540 EMTRADMDRVRDDFVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEK 619 (765)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCC
Confidence 35666655444 466778999887633322 12222 22 2223333224578
Q ss_pred EEEeccCcCCCCCccccccCCHHHHHHHHHHHHHHcCCCcccEEEecCCCCCC---C-H--HHHHHHHHHHHHcCCccEE
Q 024050 86 QVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSV---P-I--EETIGEMKKLVEEGKIKYI 159 (273)
Q Consensus 86 ~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~---~-~--~~~~~~L~~l~~~G~ir~i 159 (273)
.|..|+.......+ ..+.+... .+-+.|+..|+|+||+ |...... + . .-......++++.=++--+
T Consensus 620 ~v~~ri~~~~~~~~----g~~~~~~~-~~~~~l~~~g~d~i~v---s~g~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv~ 691 (765)
T PRK08255 620 PMSVRISAHDWVEG----GNTPDDAV-EIARAFKAAGADLIDV---SSGQVSKDEKPVYGRMYQTPFADRIRNEAGIATI 691 (765)
T ss_pred eeEEEEccccccCC----CCCHHHHH-HHHHHHHhcCCcEEEe---CCCCCCcCCCCCcCccccHHHHHHHHHHcCCEEE
Confidence 88999876432111 13344333 3445567788666665 4221110 0 0 0011223455555456666
Q ss_pred ecCCC-CHHHHHHHhhcCCceEEee-ecccccccccccHHHHHHHhCCe
Q 024050 160 GLSEA-SPGTIRRAHAVHPITAVQM-EWSLWTRDIEEEIIPLCRELGIG 206 (273)
Q Consensus 160 GvS~~-~~~~l~~~~~~~~~~~~q~-~~~l~~~~~~~~l~~~~~~~gi~ 206 (273)
++.+. +++..+++++....+.+.+ ..-+.+++ =+...+++.++.
T Consensus 692 ~~G~i~~~~~a~~~l~~g~~D~v~~gR~~l~dP~---~~~~~~~~~~~~ 737 (765)
T PRK08255 692 AVGAISEADHVNSIIAAGRADLCALARPHLADPA---WTLHEAAEIGYR 737 (765)
T ss_pred EeCCCCCHHHHHHHHHcCCcceeeEcHHHHhCcc---HHHHHHHHcCCC
Confidence 77664 7788888888877766665 22233332 255667776665
No 240
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=32.03 E-value=2.9e+02 Score=25.00 Aligned_cols=88 Identities=11% Similarity=0.160 Sum_probs=0.0
Q ss_pred EEecCCCC-----------CCCHHHHHHHHHHHHHcCCccEEec----------CCCCHHHHHHHhhcCCceEEeeeccc
Q 024050 129 YYQHRVDT-----------SVPIEETIGEMKKLVEEGKIKYIGL----------SEASPGTIRRAHAVHPITAVQMEWSL 187 (273)
Q Consensus 129 ~~lh~~~~-----------~~~~~~~~~~L~~l~~~G~ir~iGv----------S~~~~~~l~~~~~~~~~~~~q~~~~l 187 (273)
+.||.|+. ..++++.+++.....+... +.|=+ |...++.|.+++...+-.++-++||+
T Consensus 216 iSLHa~nd~lR~~L~Pink~~~~e~l~~a~r~Y~~~t~-~rVt~EY~Ll~~VND~~e~A~~L~~ll~~~~~~VNLIP~Np 294 (349)
T COG0820 216 ISLHAPNDELRDQLMPINKKYPIEELLEAIRYYPEKSG-RRVTFEYVLLDGVNDSLEHAKELAKLLKGIPCKVNLIPYNP 294 (349)
T ss_pred EecCCCCHHHHhhhhccccCCCHHHHHHHHHhhhhccC-ceEEEEeeecccccCCHHHHHHHHHHhcCCCceEEEeecCC
Q ss_pred ccccc--------cccHHHHHHHhCCeEEecccCCCcc
Q 024050 188 WTRDI--------EEEIIPLCRELGIGIVPYSPLGRGF 217 (273)
Q Consensus 188 ~~~~~--------~~~l~~~~~~~gi~v~a~spl~~G~ 217 (273)
..... .....+...++||.+....+-+..+
T Consensus 295 ~~~~~y~r~~~~~i~~F~~~L~~~gv~~tvR~~~g~DI 332 (349)
T COG0820 295 VPGSDYERSSKERIRKFLKILKKAGVLVTVRKTRGDDI 332 (349)
T ss_pred CCCCCccCCcHHHHHHHHHHHHhCCeeEEecccccccc
No 241
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=31.94 E-value=59 Score=27.63 Aligned_cols=76 Identities=13% Similarity=0.248 Sum_probs=43.8
Q ss_pred CCCcccCcceeccccCCCCCCCC--CCHHHHHHHH----HHHHHCCCCcccccc---CCCCCcHHHHHHHHHhc------
Q 024050 15 TQGLEVSKLGYGCMNLSGGYSSP--VSEEDGISMI----KHAFSKGITFFDTAD---VYGQNANEVLLGKALKQ------ 79 (273)
Q Consensus 15 ~sg~~vs~lglG~~~~~~~~~~~--~~~~~~~~~l----~~A~~~Gin~~DtA~---~Yg~g~se~~lg~~l~~------ 79 (273)
.+|+.+|.+||.+=+-= -+|.. ...+++.+++ ..|.+.|||.|--|. .|-++ +|....+++..
T Consensus 65 etgv~ipSmClSaHRRf-PfGS~D~~~r~~aleiM~KaI~LA~dLGIRtIQLAGYDVYYE~~-d~eT~~rFi~g~~~a~~ 142 (287)
T COG3623 65 ETGVRIPSMCLSAHRRF-PFGSKDEATRQQALEIMEKAIQLAQDLGIRTIQLAGYDVYYEEA-DEETRQRFIEGLKWAVE 142 (287)
T ss_pred HhCCCccchhhhhhccC-CCCCCCHHHHHHHHHHHHHHHHHHHHhCceeEeeccceeeeccC-CHHHHHHHHHHHHHHHH
Confidence 57899999999753210 12322 2345555555 455578999998885 23343 34344444432
Q ss_pred -CCCCCEEEEeccC
Q 024050 80 -LPREKIQVATKFG 92 (273)
Q Consensus 80 -~~r~~~~i~tK~~ 92 (273)
..+..|.++.-+.
T Consensus 143 lA~~aqV~lAvEiM 156 (287)
T COG3623 143 LAARAQVMLAVEIM 156 (287)
T ss_pred HHHhhccEEEeeec
Confidence 3466777666554
No 242
>PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=31.94 E-value=1e+02 Score=25.99 Aligned_cols=101 Identities=18% Similarity=0.089 Sum_probs=57.1
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCcc----EEecCCC--CHHHHHHHhhcCCce
Q 024050 106 APDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK----YIGLSEA--SPGTIRRAHAVHPIT 179 (273)
Q Consensus 106 ~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir----~iGvS~~--~~~~l~~~~~~~~~~ 179 (273)
+.+.+-.-+.+.-+.-. .=-+.+..|-.....++++++|.+|++.=+-+ .|=.-.| +.+.++.+.+...-+
T Consensus 87 d~~~~adYl~~l~~aA~---P~~L~iEgP~d~g~r~~QI~~l~~Lr~~L~~~g~~v~iVADEWCNT~eDI~~F~da~A~d 163 (248)
T PF07476_consen 87 DPDRMADYLAELEEAAA---PFKLRIEGPMDAGSREAQIEALAELREELDRRGINVEIVADEWCNTLEDIREFADAKAAD 163 (248)
T ss_dssp -HHHHHHHHHHHHHHHT---TS-EEEE-SB--SSHHHHHHHHHHHHHHHHHCT--EEEEE-TT--SHHHHHHHHHTT-SS
T ss_pred CHHHHHHHHHHHHHhcC---CCeeeeeCCcCCCChHHHHHHHHHHHHHHHhcCCCCeEEeehhcCCHHHHHHHHhcCCcC
Confidence 45555555555544443 22356677766677788888887776443333 3333444 567888888887778
Q ss_pred EEeeecccccc-cccccHHHHHHHhCCeEEe
Q 024050 180 AVQMEWSLWTR-DIEEEIIPLCRELGIGIVP 209 (273)
Q Consensus 180 ~~q~~~~l~~~-~~~~~l~~~~~~~gi~v~a 209 (273)
.+|+.-=-+-- +..-+.+-+|+++|++...
T Consensus 164 mVQIKtPDLGgi~ntieAvlyCk~~gvgaY~ 194 (248)
T PF07476_consen 164 MVQIKTPDLGGINNTIEAVLYCKEHGVGAYL 194 (248)
T ss_dssp EEEE-GGGGSSTHHHHHHHHHHHHTT-EEEE
T ss_pred EEEecCCCccchhhHHHHHHHHHhcCCceee
Confidence 88984332221 1115678899999998764
No 243
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=31.90 E-value=3.8e+02 Score=24.11 Aligned_cols=91 Identities=12% Similarity=0.122 Sum_probs=53.9
Q ss_pred CCCEEEEeccCcCCC------CCccccccCCHHHHHHHHHHHHHHcCCCcccEEEecC-CCCCCCHHHHHHHHHHHHH-c
Q 024050 82 REKIQVATKFGIAGI------GVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHR-VDTSVPIEETIGEMKKLVE-E 153 (273)
Q Consensus 82 r~~~~i~tK~~~~~~------~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~-~~~~~~~~~~~~~L~~l~~-~ 153 (273)
|..+.|++-.+.... +........+.+.|.+++....+..++++| .+-. -++....+++.+++..+.+ .
T Consensus 102 ~~t~cvSsq~GC~~~C~FC~tg~~~~~r~lt~~EI~~qv~~~~~~~~i~~I---vfmG~GEPl~n~~~vi~~l~~l~~~~ 178 (349)
T PRK14463 102 RNTLCISSQVGCAMGCAFCLTGTFRLTRNLTTAEIVNQVCAVKRDVPVRNI---VFMGMGEPLANLDNVIPALQILTDPD 178 (349)
T ss_pred CcEEEEEecCCcCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCccEE---EEecCCcchhcHHHHHHHHHHhhccc
Confidence 555666665543321 111123457889999998887766554443 3333 3333456788899998885 5
Q ss_pred CC---ccEEecCCCC-HHHHHHHhhc
Q 024050 154 GK---IKYIGLSEAS-PGTIRRAHAV 175 (273)
Q Consensus 154 G~---ir~iGvS~~~-~~~l~~~~~~ 175 (273)
|. .++|-||+.. .+.+.++...
T Consensus 179 gl~~s~r~itVsTnGl~~~i~~l~~~ 204 (349)
T PRK14463 179 GLQFSTRKVTVSTSGLVPEMEELGRE 204 (349)
T ss_pred ccCcCCceEEEECCCchHHHHHHhhc
Confidence 65 4778887644 3455555543
No 244
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=31.87 E-value=1.6e+02 Score=24.55 Aligned_cols=59 Identities=24% Similarity=0.234 Sum_probs=33.3
Q ss_pred HHHHHHHHHHcCC---ccEEecCC-CCHHHHHHHhhcC-CceEEeeecccccccccccHHHHHHHhCCeEEe
Q 024050 143 TIGEMKKLVEEGK---IKYIGLSE-ASPGTIRRAHAVH-PITAVQMEWSLWTRDIEEEIIPLCRELGIGIVP 209 (273)
Q Consensus 143 ~~~~L~~l~~~G~---ir~iGvS~-~~~~~l~~~~~~~-~~~~~q~~~~l~~~~~~~~l~~~~~~~gi~v~a 209 (273)
.++.+++++++-. =-.||.-+ .++++++.+++.. .|.+ .+....+++++|+++||.++.
T Consensus 51 a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~Fiv--------sP~~~~~v~~~~~~~~i~~iP 114 (213)
T PRK06552 51 ASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFIV--------SPSFNRETAKICNLYQIPYLP 114 (213)
T ss_pred HHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEE--------CCCCCHHHHHHHHHcCCCEEC
Confidence 4455555554321 12477766 4677777777763 3321 222236677777777776663
No 245
>PRK10200 putative racemase; Provisional
Probab=31.75 E-value=2.3e+02 Score=23.69 Aligned_cols=63 Identities=19% Similarity=0.037 Sum_probs=46.7
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEecCCCCC------------CCHHHHHHHHHHHHHcCCccEEecCCCCHHH
Q 024050 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS------------VPIEETIGEMKKLVEEGKIKYIGLSEASPGT 168 (273)
Q Consensus 105 ~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~------------~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~ 168 (273)
.+.+..++-++..-.+.+-++++.+.+|+++-. .+.....+.++.|.+.| ++.|-+...++..
T Consensus 14 aT~~~~~~i~~~t~a~~d~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~l~~~~~~L~~~g-~~~iviaCNTah~ 88 (230)
T PRK10200 14 STIPYYRLINEGIKQRLGGLHSAQLLLHSVDFHEIEECQRRGEWDKTGDILAEAALGLQRAG-AEGIVLCTNTMHK 88 (230)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCeEEEeCCChHHHHHHHHCCCcchHHHHHHHHHHHHHHcC-CCEEEECCchHHH
Confidence 356677777777888888899999999998531 23445667778888887 6888888766644
No 246
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=31.75 E-value=3.9e+02 Score=24.13 Aligned_cols=27 Identities=7% Similarity=0.177 Sum_probs=22.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCccccccC
Q 024050 37 PVSEEDGISMIKHAFSKGITFFDTADV 63 (273)
Q Consensus 37 ~~~~~~~~~~l~~A~~~Gin~~DtA~~ 63 (273)
..+.++..++++..-+.||..|+....
T Consensus 18 ~~s~~~k~~ia~~L~~~Gv~~IEvG~p 44 (363)
T TIGR02090 18 SLTVEQKVEIARKLDELGVDVIEAGFP 44 (363)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 357889999999999999999997643
No 247
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=31.66 E-value=3.7e+02 Score=23.90 Aligned_cols=103 Identities=15% Similarity=0.085 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHC-CCCccccccCCCCCcHHHHHHHHHh---cCC-CCCEEEEeccCcCCCCCccccccCCHHHHHHHH
Q 024050 40 EEDGISMIKHAFSK-GITFFDTADVYGQNANEVLLGKALK---QLP-REKIQVATKFGIAGIGVAGVIVKGAPDYVRSCC 114 (273)
Q Consensus 40 ~~~~~~~l~~A~~~-Gin~~DtA~~Yg~g~se~~lg~~l~---~~~-r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~ 114 (273)
.++..+++++..+. |++-+--+..-.--.....+.+.++ +.+ -..+-|.|+..... +..|.+.+
T Consensus 144 ~~~~~~~i~~i~~~~~i~eV~lsGGDPLl~~d~~L~~ll~~L~~i~~~~~IRi~tr~~~~~-----------P~rit~el 212 (331)
T TIGR00238 144 KKKWQKALDYIAEHPEIIEILISGGDPLMAKDHELEWLLKRLEEIPHLVRLRIGTRLPVVI-----------PQRITDEL 212 (331)
T ss_pred HHHHHHHHHHHHhCCCcCEEEEECCccccCCHHHHHHHHHHHHhcCCccEEEeecCCCccC-----------chhcCHHH
Confidence 57777888876654 6764443321110012222333333 222 23466777654322 44555666
Q ss_pred HHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCC
Q 024050 115 EASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGK 155 (273)
Q Consensus 115 ~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ 155 (273)
-+.|++.+...+.+...-.+ ..-.+++.++++.|++.|.
T Consensus 213 ~~~L~~~~~~~~~vsh~nh~--~Ei~~~~~~ai~~L~~aGi 251 (331)
T TIGR00238 213 CELLASFELQLMLVTHINHC--NEITEEFAEAMKKLRTVNV 251 (331)
T ss_pred HHHHHhcCCcEEEEccCCCh--HhCCHHHHHHHHHHHHcCC
Confidence 66777777544433322222 1223667788888888885
No 248
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=31.63 E-value=3.3e+02 Score=23.28 Aligned_cols=48 Identities=19% Similarity=0.095 Sum_probs=29.0
Q ss_pred HHHHcCCC----cccEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEecCCCC
Q 024050 117 SLKRLDVD----YIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEAS 165 (273)
Q Consensus 117 sL~~L~~d----~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~ 165 (273)
.+++.|++ ++|-..- ........-++++.+..+++.|.=--+|+||-+
T Consensus 158 ~~~~~Gi~~~~Ii~DPg~g-f~ks~~~~~~~l~~i~~l~~~~~pil~G~SrkS 209 (257)
T cd00739 158 AAESAGVARNRIILDPGIG-FGKTPEHNLELLRRLDELKQLGLPVLVGASRKS 209 (257)
T ss_pred HHHHcCCCHHHEEEecCCC-cccCHHHHHHHHHHHHHHHhCCCcEEEEecccH
Confidence 45566776 5554321 111111234678888888888877789999954
No 249
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=31.57 E-value=62 Score=28.40 Aligned_cols=16 Identities=31% Similarity=0.681 Sum_probs=14.8
Q ss_pred ccHHHHHHHhCCeEEe
Q 024050 194 EEIIPLCRELGIGIVP 209 (273)
Q Consensus 194 ~~l~~~~~~~gi~v~a 209 (273)
.+++++|+++||.||.
T Consensus 75 ~elv~yA~~rgI~viP 90 (303)
T cd02742 75 KDIIEYAAARGIEVIP 90 (303)
T ss_pred HHHHHHHHHcCCEEEE
Confidence 8899999999999994
No 250
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=31.52 E-value=3.2e+02 Score=23.15 Aligned_cols=150 Identities=18% Similarity=0.222 Sum_probs=81.4
Q ss_pred CHHHHHHHHHHHHHCCCCccccccCC-C-CCc-HHHHHHHHHhcCCCCCEEEEeccCcCCCCCccccccCCHHHHHHHHH
Q 024050 39 SEEDGISMIKHAFSKGITFFDTADVY-G-QNA-NEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCE 115 (273)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~DtA~~Y-g-~g~-se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (273)
+.+|+. .|++.|..+||.=+.- | -|. ....+.+ +.+.-....-++..++-.. +.+..+..+..
T Consensus 9 ~~~EA~----~a~~~gaDiID~K~P~~GaLGA~~~~vi~~-i~~~~~~~~pvSAtiGDlp---------~~p~~~~~aa~ 74 (235)
T PF04476_consen 9 NVEEAE----EALAGGADIIDLKNPAEGALGALFPWVIRE-IVAAVPGRKPVSATIGDLP---------MKPGTASLAAL 74 (235)
T ss_pred CHHHHH----HHHhCCCCEEEccCCCCCCCCCCCHHHHHH-HHHHcCCCCceEEEecCCC---------CCchHHHHHHH
Confidence 455554 4678899999976532 2 122 3344433 3332233355777776433 23555555444
Q ss_pred HHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHH-------HHHcCCccEEecCCCC------HHHHHHHhhcCCceEEe
Q 024050 116 ASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKK-------LVEEGKIKYIGLSEAS------PGTIRRAHAVHPITAVQ 182 (273)
Q Consensus 116 ~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~-------l~~~G~ir~iGvS~~~------~~~l~~~~~~~~~~~~q 182 (273)
..- .-|+||+=+-+.-..+ .++..+.|+. .-.+-++-..+++.+. +-.+-++.....++.++
T Consensus 75 ~~a-~~GvdyvKvGl~g~~~----~~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~~~~p~~l~~~a~~aG~~gvM 149 (235)
T PF04476_consen 75 GAA-ATGVDYVKVGLFGCKD----YDEAIEALEAVVRAVKDFDPDKKVVAVGYADAQRVGSISPLDLPEIAAEAGFDGVM 149 (235)
T ss_pred HHH-hcCCCEEEEecCCCCC----HHHHHHHHHHHHHHHhhhCCCcEEEEEEecchhhhcCCCHHHHHHHHHHcCCCEEE
Confidence 443 3588988887764332 2333333322 2234567778888863 44454554444456666
Q ss_pred eec------cccccccc---ccHHHHHHHhCCeE
Q 024050 183 MEW------SLWTRDIE---EEIIPLCRELGIGI 207 (273)
Q Consensus 183 ~~~------~l~~~~~~---~~l~~~~~~~gi~v 207 (273)
+.- ++++.-.. .+.++.|+++|+.+
T Consensus 150 lDTa~Kdg~~L~d~~~~~~L~~Fv~~ar~~gL~~ 183 (235)
T PF04476_consen 150 LDTADKDGGSLFDHLSEEELAEFVAQARAHGLMC 183 (235)
T ss_pred EecccCCCCchhhcCCHHHHHHHHHHHHHccchh
Confidence 532 34443322 66788888887654
No 251
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=31.48 E-value=1.5e+02 Score=24.79 Aligned_cols=41 Identities=15% Similarity=0.174 Sum_probs=32.3
Q ss_pred CCHHHHHHHHHHHHHCCCCccccccCCC-CCcHHHHHHHHHh
Q 024050 38 VSEEDGISMIKHAFSKGITFFDTADVYG-QNANEVLLGKALK 78 (273)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gin~~DtA~~Yg-~g~se~~lg~~l~ 78 (273)
+++++..++.+.+.++|..|+=|+..|+ .|.+.+.+....+
T Consensus 133 L~~e~i~~a~~~~~~agadfIKTsTG~~~~gat~~~v~~m~~ 174 (221)
T PRK00507 133 LTDEEKVKACEIAKEAGADFVKTSTGFSTGGATVEDVKLMRE 174 (221)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHH
Confidence 4688899999999999999999999986 4556665554444
No 252
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=31.40 E-value=3.5e+02 Score=23.52 Aligned_cols=131 Identities=18% Similarity=0.110 Sum_probs=70.4
Q ss_pred HHHHHHHHHhcCCCCCEEEEeccCcCCCCCccccccCCHHHHH-------HHHHHHHHHcCCCcccEEEecCCC------
Q 024050 69 NEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVR-------SCCEASLKRLDVDYIDLYYQHRVD------ 135 (273)
Q Consensus 69 se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~-------~~~~~sL~~L~~d~iDl~~lh~~~------ 135 (273)
..+.+.+|-+ ..-.-+++.+|..+..... ..+.+..+ +-++...+.+.++-.-++=+|=.+
T Consensus 21 ~~ea~~~F~r-AGGt~~il~nlps~~~g~~-----~~~~edy~r~yd~~lr~ve~~r~e~~~~~~~vvGvHPaE~~~l~e 94 (285)
T COG1831 21 ALEAARRFHR-AGGTHLILVNLPSWSYGIA-----PTGGEDYRRLYDIHLRLVEKIREEGPVEAYAVVGVHPAEVSRLAE 94 (285)
T ss_pred HHHHHHHHHH-cCCcEEEEeecccccccCC-----CCcHHHHHHHHHHHHHHHHHHHHhcCceeEEEeccCHHHHHHHHH
Confidence 5667777776 3445677777765544111 11233333 444444555554433444444221
Q ss_pred ----CCCC---HHHHHHHHHHHHHcCCccEEecCCCC-----H-------HHHHHHhhcCC-c-eEEeeecccccccccc
Q 024050 136 ----TSVP---IEETIGEMKKLVEEGKIKYIGLSEAS-----P-------GTIRRAHAVHP-I-TAVQMEWSLWTRDIEE 194 (273)
Q Consensus 136 ----~~~~---~~~~~~~L~~l~~~G~ir~iGvS~~~-----~-------~~l~~~~~~~~-~-~~~q~~~~l~~~~~~~ 194 (273)
+... +...++..++++++|++-.||=+..+ . +.++.+++... + ..+|++.--.+...-.
T Consensus 95 ~~~~peea~e~m~~~lelA~k~v~eg~avaiGEvGrPHypVs~~v~~~~n~vl~~a~elA~dvdc~vqLHtes~~~~~~~ 174 (285)
T COG1831 95 AGRSPEEALEEMRHALELAAKLVEEGKAVAIGEVGRPHYPVSEEVWEASNEVLEYAMELAKDVDCAVQLHTESLDEETYE 174 (285)
T ss_pred hccChHHHHHHHHHHHHHHHHHHhccceeeeeccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCChHHHH
Confidence 0111 23467788899999998888777632 1 23444444421 2 3455543333433237
Q ss_pred cHHHHHHHhCC
Q 024050 195 EIIPLCRELGI 205 (273)
Q Consensus 195 ~l~~~~~~~gi 205 (273)
++-+++++.|+
T Consensus 175 ~i~~~ak~~G~ 185 (285)
T COG1831 175 EIAEMAKEAGI 185 (285)
T ss_pred HHHHHHHHhCC
Confidence 78889999886
No 253
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=31.37 E-value=3.1e+02 Score=22.80 Aligned_cols=101 Identities=18% Similarity=0.172 Sum_probs=63.5
Q ss_pred CCCHHHHHHHHHHHHHCCCCccccccCCCCCcHHHHHHHHHhcCCCCCEEEEeccCcCCCCCccccccCCHHHHHHHHHH
Q 024050 37 PVSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEA 116 (273)
Q Consensus 37 ~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (273)
..+.++..++.+.|.+.|+.-+=..+.|= +...+.|+ ..++-|+|=++.+. + ..+.+.-...+++
T Consensus 14 ~~t~~~i~~lc~~A~~~~~~avcv~p~~v-----~~a~~~l~---~~~v~v~tVigFP~---G----~~~~~~K~~E~~~ 78 (211)
T TIGR00126 14 DTTEEDIITLCAQAKTYKFAAVCVNPSYV-----PLAKELLK---GTEVRICTVVGFPL---G----ASTTDVKLYETKE 78 (211)
T ss_pred CCCHHHHHHHHHHHHhhCCcEEEeCHHHH-----HHHHHHcC---CCCCeEEEEeCCCC---C----CCcHHHHHHHHHH
Confidence 35789999999999999887665555442 33444554 34677777765443 1 1223333344454
Q ss_pred HHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHc
Q 024050 117 SLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEE 153 (273)
Q Consensus 117 sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~ 153 (273)
.++ +|.|-||+++-...-.........+.+.+.++.
T Consensus 79 Av~-~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~ 114 (211)
T TIGR00126 79 AIK-YGADEVDMVINIGALKDGNEEVVYDDIRAVVEA 114 (211)
T ss_pred HHH-cCCCEEEeecchHhhhCCcHHHHHHHHHHHHHH
Confidence 444 799999999876543334456666676666653
No 254
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=31.34 E-value=3.7e+02 Score=24.42 Aligned_cols=132 Identities=10% Similarity=0.102 Sum_probs=68.5
Q ss_pred CCHHHHHHHHHHHHHCCCCccccccCCCCCcHHHHHHHHH---hcC-CCCCEEEEeccCcCCCCCccccccCCHHHHHHH
Q 024050 38 VSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKAL---KQL-PREKIQVATKFGIAGIGVAGVIVKGAPDYVRSC 113 (273)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~se~~lg~~l---~~~-~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~ 113 (273)
++.++..++++.+.+.|++.|--+. |.-.-..-+-+.+ ++. .-..+.|+|-... +.+.
T Consensus 90 ls~eei~~~i~~~~~~Gv~~I~~tG--GEPllr~dl~eli~~l~~~~gi~~i~itTNG~l----------------L~~~ 151 (373)
T PLN02951 90 LSQDEIVRLAGLFVAAGVDKIRLTG--GEPTLRKDIEDICLQLSSLKGLKTLAMTTNGIT----------------LSRK 151 (373)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEC--CCCcchhhHHHHHHHHHhcCCCceEEEeeCcch----------------HHHH
Confidence 5779999999999999998775432 2111111122233 222 1223556553210 1122
Q ss_pred HHHHHHHcCCCcccEEEecCCCC--------CCCHHHHHHHHHHHHHcCCc----cEEecCCCCHHHHHHHhhc---CCc
Q 024050 114 CEASLKRLDVDYIDLYYQHRVDT--------SVPIEETIGEMKKLVEEGKI----KYIGLSEASPGTIRRAHAV---HPI 178 (273)
Q Consensus 114 ~~~sL~~L~~d~iDl~~lh~~~~--------~~~~~~~~~~L~~l~~~G~i----r~iGvS~~~~~~l~~~~~~---~~~ 178 (273)
++ .|...|++.+- +.|+..++ ....+.++++++.+++.|+. ..+-+-.++.+++.++.+. .++
T Consensus 152 ~~-~L~~aGld~Vn-ISLDsl~~e~~~~itr~~~~~~vl~~I~~a~~~G~~~vkin~vv~~g~N~~Ei~~li~~a~~~gi 229 (373)
T PLN02951 152 LP-RLKEAGLTSLN-ISLDTLVPAKFEFLTRRKGHDRVLESIDTAIELGYNPVKVNCVVMRGFNDDEICDFVELTRDKPI 229 (373)
T ss_pred HH-HHHhCCCCeEE-EeeccCCHHHHHHHhcCCCHHHHHHHHHHHHHcCCCcEEEEEEecCCCCHHHHHHHHHHHHhCCC
Confidence 22 34445654432 23344332 12357789999999999852 2233345666666666554 344
Q ss_pred eEEeeeccccc
Q 024050 179 TAVQMEWSLWT 189 (273)
Q Consensus 179 ~~~q~~~~l~~ 189 (273)
.+.-++|.++.
T Consensus 230 ~vr~ie~mP~~ 240 (373)
T PLN02951 230 NVRFIEFMPFD 240 (373)
T ss_pred eEEEEEcccCC
Confidence 44445555544
No 255
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=31.20 E-value=3.2e+02 Score=23.05 Aligned_cols=146 Identities=12% Similarity=0.077 Sum_probs=80.7
Q ss_pred ccCCCCCcccCcceeccccCCCCCCCCCCHHHHHHHHHHHHHCCCCccccccCCCCCcHHHHHHHHHhc-----CCCCCE
Q 024050 11 VKLGTQGLEVSKLGYGCMNLSGGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ-----LPREKI 85 (273)
Q Consensus 11 r~lg~sg~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~se~~lg~~l~~-----~~r~~~ 85 (273)
++|| .|+.++.|.+ --| +.+.. ..--..+++.-+++.|.+.- .| .+|..+.+++++ .+=.+.
T Consensus 19 krLG-GGiP~GsL~l---IEG-d~~tG-KSvLsqr~~YG~L~~g~~v~----yv---sTe~T~refi~qm~sl~ydv~~~ 85 (235)
T COG2874 19 KRLG-GGIPVGSLIL---IEG-DNGTG-KSVLSQRFAYGFLMNGYRVT----YV---STELTVREFIKQMESLSYDVSDF 85 (235)
T ss_pred hhcc-CCCccCeEEE---EEC-CCCcc-HHHHHHHHHHHHHhCCceEE----EE---EechhHHHHHHHHHhcCCCchHH
Confidence 4664 4677776654 111 12211 22334667777888888743 23 377777778875 222233
Q ss_pred EEEeccCcCCCCCccccccCCHHHHHHHHHHHHHHcCCCcccEEEecCCCCC------CCHHHHHHHHHHHHHcCCccEE
Q 024050 86 QVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS------VPIEETIGEMKKLVEEGKIKYI 159 (273)
Q Consensus 86 ~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~------~~~~~~~~~L~~l~~~G~ir~i 159 (273)
++.-++....-. ......+++.-+.-++..++....-.-|++.+.+.+.- ..+.+.+..+.+|.+.||+--+
T Consensus 86 ~l~G~l~~~~~~--~~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~~~~~vl~fm~~~r~l~d~gKvIil 163 (235)
T COG2874 86 LLSGRLLFFPVN--LEPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYDSEDAVLNFMTFLRKLSDLGKVIIL 163 (235)
T ss_pred HhcceeEEEEec--ccccccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcccHHHHHHHHHHHHHHHhCCCEEEE
Confidence 333222111100 00112345556666667777666777899999887642 1245667777888899998766
Q ss_pred ecCC--CCHHHHHH
Q 024050 160 GLSE--ASPGTIRR 171 (273)
Q Consensus 160 GvS~--~~~~~l~~ 171 (273)
=+.. ++.+.+-+
T Consensus 164 Tvhp~~l~e~~~~r 177 (235)
T COG2874 164 TVHPSALDEDVLTR 177 (235)
T ss_pred EeChhhcCHHHHHH
Confidence 6654 34344433
No 256
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=31.12 E-value=3.9e+02 Score=24.01 Aligned_cols=167 Identities=14% Similarity=0.185 Sum_probs=92.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCccccccCCCCCc---HHHHHHHHHhcCC------CCCEEEEeccCcCCCCCccccccCCH
Q 024050 37 PVSEEDGISMIKHAFSKGITFFDTADVYGQNA---NEVLLGKALKQLP------REKIQVATKFGIAGIGVAGVIVKGAP 107 (273)
Q Consensus 37 ~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~---se~~lg~~l~~~~------r~~~~i~tK~~~~~~~~~~~~~~~~~ 107 (273)
..+.+|..+.+..+.+.--.-++---..|.|+ +-..+-++++... ...+.|+| +| -.
T Consensus 128 nlt~~EIv~qv~~~~~~~~~~~~~IvfmGmGEPlln~~~v~~~i~~l~~~~~i~~r~itvST-~G-------------~~ 193 (345)
T PRK14457 128 SLKAHEIVDQVLTVQEDMQRRVSHVVFMGMGEPLLNIDEVLAAIRCLNQDLGIGQRRITVST-VG-------------VP 193 (345)
T ss_pred ccCHHHHHHHHHHHHHHhcCCCCEEEEEecCccccCHHHHHHHHHHHhcccCCccCceEEEC-CC-------------ch
Confidence 35677777777666532101122222344342 3344555665421 12455655 22 12
Q ss_pred HHHHHHHHHHHHHcC-CCcccEEEecCCCCC-----------CCHHHHHHHHHH-HHHcCC---ccEEecC--CCCHHHH
Q 024050 108 DYVRSCCEASLKRLD-VDYIDLYYQHRVDTS-----------VPIEETIGEMKK-LVEEGK---IKYIGLS--EASPGTI 169 (273)
Q Consensus 108 ~~i~~~~~~sL~~L~-~d~iDl~~lh~~~~~-----------~~~~~~~~~L~~-l~~~G~---ir~iGvS--~~~~~~l 169 (273)
..+++-.+.-+++|+ .+....+.||.+++. .+++++++++.+ +.+.|+ ++++=+. |.+.+.+
T Consensus 194 ~~i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~y~~~~gr~I~iey~LIpGvNDs~e~a 273 (345)
T PRK14457 194 KTIPQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLIPSAKNYPIENLLEDCRHYVAITGRRVSFEYILLGGVNDLPEHA 273 (345)
T ss_pred hhHHHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCcCCCHHHH
Confidence 335554454455554 345578999999753 336677877765 556664 5666554 3455665
Q ss_pred HHHhh---cCCceEEeeeccccccc----cc----ccHHHHHHHhCCeEEecccCCCcc
Q 024050 170 RRAHA---VHPITAVQMEWSLWTRD----IE----EEIIPLCRELGIGIVPYSPLGRGF 217 (273)
Q Consensus 170 ~~~~~---~~~~~~~q~~~~l~~~~----~~----~~l~~~~~~~gi~v~a~spl~~G~ 217 (273)
+++.+ ..+..++-++||.+... +. ....+..+++|+.+......+.-+
T Consensus 274 ~~La~~l~~l~~~VnLIPynp~~~~~~~~ps~e~i~~f~~~L~~~Gi~vtvR~~~G~di 332 (345)
T PRK14457 274 EELANLLRGFQSHVNLIPYNPIDEVEFQRPSPKRIQAFQRVLEQRGVAVSVRASRGLDA 332 (345)
T ss_pred HHHHHHHhcCCCeEEEecCCCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCCch
Confidence 55543 34556777899886531 11 345666777899998887776543
No 257
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=30.99 E-value=1.6e+02 Score=26.01 Aligned_cols=132 Identities=16% Similarity=0.105 Sum_probs=71.0
Q ss_pred CHHHHHHHHHHHHHCCCCccccc----------cCCCCC--cHHHHHHHHHhc-CCCCCEEEEeccCcCCCCCccccccC
Q 024050 39 SEEDGISMIKHAFSKGITFFDTA----------DVYGQN--ANEVLLGKALKQ-LPREKIQVATKFGIAGIGVAGVIVKG 105 (273)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~DtA----------~~Yg~g--~se~~lg~~l~~-~~r~~~~i~tK~~~~~~~~~~~~~~~ 105 (273)
+.+...++.+.+.+.|+..||-= ..+|.+ .+-..+.+.++. ...-++-|+.|+.... +.
T Consensus 64 ~~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~g~--------~~ 135 (309)
T PF01207_consen 64 DPEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVPIPVSVKIRLGW--------DD 135 (309)
T ss_dssp -HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEESEC--------T-
T ss_pred cHHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccccceEEeccccc--------cc
Confidence 67888888888888899988842 233322 233455555554 1112255666654333 11
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEecCCCCCCCH--HHHHHHHHHHHHcCCccEEecCC-CCHHHHHHHhhcCCceEEe
Q 024050 106 APDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPI--EETIGEMKKLVEEGKIKYIGLSE-ASPGTIRRAHAVHPITAVQ 182 (273)
Q Consensus 106 ~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~--~~~~~~L~~l~~~G~ir~iGvS~-~~~~~l~~~~~~~~~~~~q 182 (273)
+.+...+ +-+.|+..| +|.+.+|.-...... ..-|+.+.++++.=.|--||=.+ ++++.+++.++....+-++
T Consensus 136 ~~~~~~~-~~~~l~~~G---~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~ipvi~NGdI~s~~d~~~~~~~tg~dgvM 211 (309)
T PF01207_consen 136 SPEETIE-FARILEDAG---VSAITVHGRTRKQRYKGPADWEAIAEIKEALPIPVIANGDIFSPEDAERMLEQTGADGVM 211 (309)
T ss_dssp -CHHHHH-HHHHHHHTT-----EEEEECS-TTCCCTS---HHHHHHCHHC-TSEEEEESS--SHHHHHHHCCCH-SSEEE
T ss_pred chhHHHH-HHHHhhhcc---cceEEEecCchhhcCCcccchHHHHHHhhcccceeEEcCccCCHHHHHHHHHhcCCcEEE
Confidence 2333333 444667777 799999987654332 46788888888877776665544 5667777776653333333
No 258
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=30.78 E-value=2e+02 Score=22.48 Aligned_cols=100 Identities=17% Similarity=0.168 Sum_probs=65.0
Q ss_pred cCCHHHHHHHHHHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHH--cCCccEEecCCCCHHHHHHHhhcCCceEE
Q 024050 104 KGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVE--EGKIKYIGLSEASPGTIRRAHAVHPITAV 181 (273)
Q Consensus 104 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~--~G~ir~iGvS~~~~~~l~~~~~~~~~~~~ 181 (273)
..+.+.|.+.+++--+.+|+ .++++|=. .-.+.++++.+..+ +|.|-.=|--+++.-.|.+++....+.++
T Consensus 25 ~~tl~~i~~~~~~~a~~~g~-~v~~~QSN------~EGelId~I~~a~~~~dgiiINpga~THtSiAl~DAl~~~~~P~V 97 (146)
T PRK05395 25 STTLADIEALLEEEAAELGV-ELEFFQSN------HEGELIDRIHEARDGADGIIINPGAYTHTSVALRDALAAVSIPVI 97 (146)
T ss_pred CCCHHHHHHHHHHHHHHcCC-EEEEEeeC------cHHHHHHHHHhcccCCcEEEECchHHHHHHHHHHHHHHcCCCCEE
Confidence 35688999999999999996 47777632 23578888888753 23332224444566678888888777788
Q ss_pred eeecccccccccccHHHHHHHhCCeEEecccCCCccCCC
Q 024050 182 QMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGG 220 (273)
Q Consensus 182 q~~~~l~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~ 220 (273)
.++.|-...+. .++.+ -..+|.+.|..+|
T Consensus 98 EVHiSNi~aRE------~fR~~----S~is~~a~G~I~G 126 (146)
T PRK05395 98 EVHLSNIHARE------EFRHH----SYISDVAVGVICG 126 (146)
T ss_pred EEecCCccccc------ccccc----ccccccceEEEee
Confidence 88888776542 12222 1135666666665
No 259
>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]
Probab=30.66 E-value=4.5e+02 Score=24.53 Aligned_cols=145 Identities=17% Similarity=0.141 Sum_probs=83.8
Q ss_pred CHHHHHHHHHHHHHCCCCccccccCCC-CCcHHHHHHHHHhc-CCCCCEEEEeccCcCCCCCccccccCCHHHHHHHHHH
Q 024050 39 SEEDGISMIKHAFSKGITFFDTADVYG-QNANEVLLGKALKQ-LPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEA 116 (273)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg-~g~se~~lg~~l~~-~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (273)
......+.++.+++.|.. || +...|..+++.|.+ .+--+.+=.++.+ -+....+++-
T Consensus 70 ~~p~V~~Av~~~l~~G~~-------fg~Pte~Ei~~Aell~~~~p~~e~vrfvnSG--------------TEAtmsAiRl 128 (432)
T COG0001 70 AHPAVVEAVQEQLERGLS-------FGAPTELEVELAELLIERVPSIEKVRFVNSG--------------TEATMSAIRL 128 (432)
T ss_pred CCHHHHHHHHHHHHhcCC-------CCCCCHHHHHHHHHHHHhcCcccEEEEecch--------------hHHHHHHHHH
Confidence 456699999999999975 55 45688889999887 4442333333322 3455667776
Q ss_pred HHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcC-------CccEEecC-----------CCCHHHHHHHhhcC--
Q 024050 117 SLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEG-------KIKYIGLS-----------EASPGTIRRAHAVH-- 176 (273)
Q Consensus 117 sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G-------~ir~iGvS-----------~~~~~~l~~~~~~~-- 176 (273)
..---|.|.|=.+-=+....... -|++.| .-.+-|+- -.+.+.++++.+..
T Consensus 129 ARa~TgR~kIikF~G~YHG~~D~---------~lv~agsg~~t~g~p~s~Gvp~~~a~~ti~~~yND~~al~~~~~~~g~ 199 (432)
T COG0001 129 ARAYTGRDKIIKFEGCYHGHSDS---------LLVKAGSGAATLGSPSSPGVPADVAKHTLVLPYNDLEALEEAFEEYGD 199 (432)
T ss_pred HHHhhCCCeEEEEcCCCCCCccH---------HHhhcCcCcccCCCCCCCCCChhhhccEEEecCCCHHHHHHHHHHcCC
Confidence 66666666554433222211110 122222 11122222 23567788877764
Q ss_pred CceEEe-----eeccccccccc--ccHHHHHHHhCCeEEecccC
Q 024050 177 PITAVQ-----MEWSLWTRDIE--EEIIPLCRELGIGIVPYSPL 213 (273)
Q Consensus 177 ~~~~~q-----~~~~l~~~~~~--~~l~~~~~~~gi~v~a~spl 213 (273)
.+.++. -+..+..+..+ +.+.+.|+++|+-+|-=...
T Consensus 200 ~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEVi 243 (432)
T COG0001 200 DIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVI 243 (432)
T ss_pred cEEEEEeccccCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecch
Confidence 454444 34455555433 88999999999998854443
No 260
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=30.55 E-value=3.6e+02 Score=23.38 Aligned_cols=114 Identities=12% Similarity=0.045 Sum_probs=62.8
Q ss_pred CHHHHHHHHHHHHH---HcCCCcccEEEecCCCC-CCCHHHHHHHHHHHHHcCCccEEecCC----CCHHHHHHHhhcC-
Q 024050 106 APDYVRSCCEASLK---RLDVDYIDLYYQHRVDT-SVPIEETIGEMKKLVEEGKIKYIGLSE----ASPGTIRRAHAVH- 176 (273)
Q Consensus 106 ~~~~i~~~~~~sL~---~L~~d~iDl~~lh~~~~-~~~~~~~~~~L~~l~~~G~ir~iGvS~----~~~~~l~~~~~~~- 176 (273)
+++.+.+.+.+..+ ..| .++.+..-+...+ ..+.+...+..+++.+.| +..|.++. .+|.++.++++..
T Consensus 109 t~~e~l~~~~~~i~~a~~~G-~~v~~~~~d~~~~~r~~~~~~~~~~~~~~~~G-~~~i~l~DT~G~~~P~~v~~l~~~l~ 186 (280)
T cd07945 109 TPEEHFADIREVIEYAIKNG-IEVNIYLEDWSNGMRDSPDYVFQLVDFLSDLP-IKRIMLPDTLGILSPFETYTYISDMV 186 (280)
T ss_pred CHHHHHHHHHHHHHHHHhCC-CEEEEEEEeCCCCCcCCHHHHHHHHHHHHHcC-CCEEEecCCCCCCCHHHHHHHHHHHH
Confidence 44444444444443 334 3566666552211 345677778888888888 67788886 4676666655431
Q ss_pred -CceEEeeeccccccccc-ccHHHHHHHhCCeEEecccCCCccCCCC
Q 024050 177 -PITAVQMEWSLWTRDIE-EEIIPLCRELGIGIVPYSPLGRGFFGGK 221 (273)
Q Consensus 177 -~~~~~q~~~~l~~~~~~-~~l~~~~~~~gi~v~a~spl~~G~L~~~ 221 (273)
.+.-+.+.+|.-+..-. ..-.-.|-+.|+..+--+..+-|--+|.
T Consensus 187 ~~~~~~~i~~H~Hnd~Gla~AN~laA~~aGa~~vd~s~~GlGe~aGN 233 (280)
T cd07945 187 KRYPNLHFDFHAHNDYDLAVANVLAAVKAGIKGLHTTVNGLGERAGN 233 (280)
T ss_pred hhCCCCeEEEEeCCCCCHHHHHHHHHHHhCCCEEEEecccccccccC
Confidence 11112344444333211 2223345578999988777776655553
No 261
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=30.54 E-value=30 Score=31.28 Aligned_cols=163 Identities=17% Similarity=0.108 Sum_probs=76.2
Q ss_pred CHHHHHHHHHHHHHCCCCccccccCCCCCcHHHH---HHHHHhcCCCCCEEEEeccCcCCCCCccccccCCHHHHHHHHH
Q 024050 39 SEEDGISMIKHAFSKGITFFDTADVYGQNANEVL---LGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCE 115 (273)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~se~~---lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (273)
+.++..+.|+.|.+.|++.+=|+=+...+..+.. +.+.++......+.|+.=+.+..... ...+.+. +
T Consensus 12 ~~~~~~~yi~~a~~~Gf~~iFTSL~ipe~~~~~~~~~~~~l~~~a~~~~~~v~~Disp~~l~~----lg~~~~d----l- 82 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFKRIFTSLHIPEDDPEDYLERLKELLKLAKELGMEVIADISPKVLKK----LGISYDD----L- 82 (357)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEEEE---------HHHHHHHHHHHHHHCT-EEEEEE-CCHHHT----TT-BTTB----T-
T ss_pred CHHHHHHHHHHHHHCCCCEEECCCCcCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHH----cCCCHHH----H-
Confidence 6889999999999999999989877764322322 22222222344555555544332100 0011111 1
Q ss_pred HHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEecCCCCHHHHHHHhhcC-CceEEeeeccccccccc-
Q 024050 116 ASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVH-PITAVQMEWSLWTRDIE- 193 (273)
Q Consensus 116 ~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~-~~~~~q~~~~l~~~~~~- 193 (273)
+.++.||++.| =|. .... .+.+.+|-+.|.--.+=.|+.+.+.+..+.+.. .+.-+..-+|.+-+...
T Consensus 83 ~~~~~lGi~~l---RlD---~Gf~----~~~ia~ls~ng~~I~LNASti~~~~l~~L~~~~~~~~~i~a~HNfYPr~~TG 152 (357)
T PF05913_consen 83 SFFKELGIDGL---RLD---YGFS----GEEIAKLSKNGIKIELNASTITEEELDELIKYGANFSNIIACHNFYPRPYTG 152 (357)
T ss_dssp HHHHHHT-SEE---EES---SS-S----CHHHHHHTTT-SEEEEETTT--CCHHHHHCCTT--GGGEEEE---B-STT-S
T ss_pred HHHHHcCCCEE---EEC---CCCC----HHHHHHHHhCCCEEEEECCCCChHHHHHHHHhcCCHHHeEEEecccCCCCCC
Confidence 13455664432 221 1111 233344444477667777888888898888764 34444444555554321
Q ss_pred ------ccHHHHHHHhCCeEEecccCCCccCCCC
Q 024050 194 ------EEIIPLCRELGIGIVPYSPLGRGFFGGK 221 (273)
Q Consensus 194 ------~~l~~~~~~~gi~v~a~spl~~G~L~~~ 221 (273)
.+.=++.++.|+.+.|+-|-. +...|+
T Consensus 153 Ls~~~f~~~n~~~k~~gi~~~AFI~g~-~~~rGP 185 (357)
T PF05913_consen 153 LSEEFFIEKNQLLKEYGIKTAAFIPGD-ENKRGP 185 (357)
T ss_dssp B-HHHHHHHHHHHHHTT-EEEEEE--S-SS-BTT
T ss_pred CCHHHHHHHHHHHHHCCCcEEEEecCC-CcccCC
Confidence 344566778899999998766 333443
No 262
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=30.42 E-value=4.8e+02 Score=24.77 Aligned_cols=182 Identities=12% Similarity=0.029 Sum_probs=88.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCccccccCCCCCcHHHHHHHHH-hcCCCCCEEEEeccCcCCC----------CCc------
Q 024050 37 PVSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKAL-KQLPREKIQVATKFGIAGI----------GVA------ 99 (273)
Q Consensus 37 ~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~se~~lg~~l-~~~~r~~~~i~tK~~~~~~----------~~~------ 99 (273)
.++.++..++.+.-.+.|+..|+....-......+.+ +.+ +..+..++...+......- +..
T Consensus 19 ~~s~e~K~~ia~~L~~~GV~~IEvG~p~~s~~d~e~v-~~i~~~~~~~~i~al~r~~~~did~a~~al~~~~~~~v~i~~ 97 (494)
T TIGR00973 19 SLTVEEKLQIALALERLGVDIIEAGFPVSSPGDFEAV-QRIARTVKNPRVCGLARCVEKDIDAAAEALKPAEKFRIHTFI 97 (494)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHH-HHHHHhCCCCEEEEEcCCCHHhHHHHHHhccccCCCEEEEEE
Confidence 3478888999999889999999876433211112233 333 2222233332222100000 000
Q ss_pred -------cccccCCHHHHHHHHHHHHHHcCCCcccEEEecCCCC-CCCHHHHHHHHHHHHHcCCccEEecCC----CCHH
Q 024050 100 -------GVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDT-SVPIEETIGEMKKLVEEGKIKYIGLSE----ASPG 167 (273)
Q Consensus 100 -------~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~-~~~~~~~~~~L~~l~~~G~ir~iGvS~----~~~~ 167 (273)
......+++.+.+.+.++.+... ++-.-+.+...|. ..+.+...+.++.+.+.| +..|.++. ..|+
T Consensus 98 ~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~-~~g~~v~f~~Ed~~r~d~~~l~~~~~~~~~~G-a~~i~l~DTvG~~~P~ 175 (494)
T TIGR00973 98 ATSPIHLEHKLKMTRDEVLERAVGMVKYAK-NFTDDVEFSCEDAGRTEIPFLARIVEAAINAG-ATTINIPDTVGYALPA 175 (494)
T ss_pred ccCHHHHHHHhCCCHHHHHHHHHHHHHHHH-HcCCeEEEEcCCCCCCCHHHHHHHHHHHHHcC-CCEEEeCCCCCCCCHH
Confidence 00112244455554555444443 2222344444433 245666777777777776 46677775 3566
Q ss_pred HHHHHhhc----CC-ceEEeeeccccccccc-ccHHHHHHHhCCeEEecccCCCccCCCC
Q 024050 168 TIRRAHAV----HP-ITAVQMEWSLWTRDIE-EEIIPLCRELGIGIVPYSPLGRGFFGGK 221 (273)
Q Consensus 168 ~l~~~~~~----~~-~~~~q~~~~l~~~~~~-~~l~~~~~~~gi~v~a~spl~~G~L~~~ 221 (273)
++.++++. .+ ..-+.+.+|.-+..-- ..-.-.|-+.|+..+--+.++-|--+|.
T Consensus 176 ~~~~~i~~l~~~~~~~~~v~l~~H~HND~GlAvANalaAv~aGa~~vd~tv~GlGERaGN 235 (494)
T TIGR00973 176 EYGNLIKGLRENVPNIDKAILSVHCHNDLGLAVANSLAAVQNGARQVECTINGIGERAGN 235 (494)
T ss_pred HHHHHHHHHHHhhccccCceEEEEeCCCCChHHHHHHHHHHhCCCEEEEEeecccccccC
Confidence 55554433 21 1112333333332110 1122233468888888888887766654
No 263
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=30.37 E-value=2.1e+02 Score=20.72 Aligned_cols=56 Identities=23% Similarity=0.268 Sum_probs=31.1
Q ss_pred HHHHHcCC-ccEEecCCCCHHHHHHHhhcCCceEEeeeccccccccc-ccHHHHHHHhC
Q 024050 148 KKLVEEGK-IKYIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRDIE-EEIIPLCRELG 204 (273)
Q Consensus 148 ~~l~~~G~-ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~~l~~~~~~-~~l~~~~~~~g 204 (273)
.-|+..|. +.++| .+.+++.+.+......++++.+..+.-..... .++++.+++.+
T Consensus 21 ~~l~~~G~~V~~lg-~~~~~~~l~~~~~~~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~ 78 (119)
T cd02067 21 RALRDAGFEVIDLG-VDVPPEEIVEAAKEEDADAIGLSGLLTTHMTLMKEVIEELKEAG 78 (119)
T ss_pred HHHHHCCCEEEECC-CCCCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHcC
Confidence 34445565 34556 44566666666655666666665553332211 56777777763
No 264
>PRK06361 hypothetical protein; Provisional
Probab=30.36 E-value=3e+02 Score=22.38 Aligned_cols=155 Identities=12% Similarity=0.068 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHCCCCccccccCCCCCcHHHHHH---HHH---hcCCCCCEEEEeccCcCCCCCccccccCCHHHHHHHH
Q 024050 41 EDGISMIKHAFSKGITFFDTADVYGQNANEVLLG---KAL---KQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCC 114 (273)
Q Consensus 41 ~~~~~~l~~A~~~Gin~~DtA~~Yg~g~se~~lg---~~l---~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~ 114 (273)
....+++++|.+.|+..|=.+++.....-...+- +.. +...+=+++...-+.... +..+ ..+
T Consensus 10 ~~~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~GiE~~~~~-----------~~~~-~~~ 77 (212)
T PRK06361 10 LIPSELVRRARVLGYRAIAITDHADASNLEEILEKLVRAAEELELYWDIEVIPGVELTHVP-----------PKLI-PKL 77 (212)
T ss_pred CCHHHHHHHHHHcCCCEEEEecCCCCccHHHHHHHHHHHHHHHhhcCCCEEEEEEEEcccC-----------chhh-chH
Confidence 4478899999999999887777754211111111 111 111122333333332111 2222 233
Q ss_pred HHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEecCCC-CHHHHHHHhhcCCceEEeeeccccccccc
Q 024050 115 EASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEA-SPGTIRRAHAVHPITAVQMEWSLWTRDIE 193 (273)
Q Consensus 115 ~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~-~~~~l~~~~~~~~~~~~q~~~~l~~~~~~ 193 (273)
.+.+.+++ .|+..+|......+.. ...-.++.+.|.+.-||=-.. ..+.++.+.+... .+.++.+...+...
T Consensus 78 ~~~~~~~~---~~~~svH~~~~~~~~~--~~~~~~a~~~~~~dvlaHpd~~~~~~~~~~~~~~~--~lEin~~~~~~~~~ 150 (212)
T PRK06361 78 AKKARDLG---AEIVVVHGETIVEPVE--EGTNLAAIECEDVDILAHPGLITEEEAELAAENGV--FLEITARKGHSLTN 150 (212)
T ss_pred HHHHHHCC---CEEEEECCCCcchhhh--hhhHHHHHhCCCCcEecCcchhhHHHHHHHHHcCe--EEEEECCCCcccch
Confidence 35555665 5666899654322221 111145778888766654432 2233333333322 12222211122223
Q ss_pred ccHHHHHHHhCCeEEecccCC
Q 024050 194 EEIIPLCRELGIGIVPYSPLG 214 (273)
Q Consensus 194 ~~l~~~~~~~gi~v~a~spl~ 214 (273)
..+++.|++.|+.++.-|.-.
T Consensus 151 ~~~l~~a~~~gi~vv~~SDaH 171 (212)
T PRK06361 151 GHVARIAREAGAPLVINTDTH 171 (212)
T ss_pred HHHHHHHHHhCCcEEEECCCC
Confidence 679999999999987765544
No 265
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II. This model specifies the type II enzyme. The type I enzyme, often found as part of a multifunctional protein, is described by TIGR01093.
Probab=30.21 E-value=2.4e+02 Score=21.86 Aligned_cols=81 Identities=15% Similarity=0.167 Sum_probs=56.5
Q ss_pred cCCHHHHHHHHHHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHH--cCCccEEecCCCCHHHHHHHhhcCCceEE
Q 024050 104 KGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVE--EGKIKYIGLSEASPGTIRRAHAVHPITAV 181 (273)
Q Consensus 104 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~--~G~ir~iGvS~~~~~~l~~~~~~~~~~~~ 181 (273)
..+.+.+.+.+++--+.+|+ .++.+|=. .-.+.++++.+..+ +|.|-.=|--+++.-.|.+++....+.++
T Consensus 23 ~~tl~di~~~~~~~a~~~g~-~v~~~QSN------~EGelId~i~~a~~~~dgiIINpga~THtSiAl~DAl~~~~~P~v 95 (141)
T TIGR01088 23 SQTLEEIVEIIETFAAQLNV-ELEFFQSN------SEGQLIDKIHEAEGQYDGIIINPGALTHTSVALRDALAAVSLPVV 95 (141)
T ss_pred CCCHHHHHHHHHHHHHHcCC-EEEEEeeC------cHHHHHHHHHhccccCCEEEEcChHHhhhHHHHHHHHHcCCCCEE
Confidence 34688999999999999995 36666632 23577888888754 24443334445666678888888777788
Q ss_pred eeeccccccc
Q 024050 182 QMEWSLWTRD 191 (273)
Q Consensus 182 q~~~~l~~~~ 191 (273)
.++.|-...+
T Consensus 96 EVHiSNi~aR 105 (141)
T TIGR01088 96 EVHLSNVHAR 105 (141)
T ss_pred EEEcCCcccc
Confidence 8888876654
No 266
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=30.21 E-value=1.8e+02 Score=27.71 Aligned_cols=99 Identities=19% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHc-------CCccEEecCCCCHHHHHHHhhc------CC
Q 024050 111 RSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEE-------GKIKYIGLSEASPGTIRRAHAV------HP 177 (273)
Q Consensus 111 ~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~-------G~ir~iGvS~~~~~~l~~~~~~------~~ 177 (273)
+-.+-+.|.++|+|+|.+-+ |.......+.++.+.+.... ...+-.+++....+.++.+.+. ..
T Consensus 108 Ki~Ia~~L~~~GVd~IEvG~---Pa~s~~e~e~i~~i~~~~~~~~~~~~~l~~~i~a~~R~~~~dId~a~~a~~~a~~~~ 184 (503)
T PLN03228 108 KLEIARQLAKLRVDIMEVGF---PGSSEEEFEAVKTIAKTVGNEVDEETGYVPVICGIARCKKRDIEAAWEALKYAKRPR 184 (503)
T ss_pred HHHHHHHHHHcCCCEEEEeC---CCCCHHHHHHHHHHHHhcccccccccccceEEeeecccCHhhHHHHHHhhcccCCCE
Q ss_pred ceEE------eeeccccccccc-----ccHHHHHHHhCCeEEeccc
Q 024050 178 ITAV------QMEWSLWTRDIE-----EEIIPLCRELGIGIVPYSP 212 (273)
Q Consensus 178 ~~~~------q~~~~l~~~~~~-----~~l~~~~~~~gi~v~a~sp 212 (273)
+.+. ++++++-....+ .+.+++++++|...+.+++
T Consensus 185 V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~ 230 (503)
T PLN03228 185 ILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFGC 230 (503)
T ss_pred EEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEecc
No 267
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=30.11 E-value=3.8e+02 Score=23.71 Aligned_cols=106 Identities=13% Similarity=0.010 Sum_probs=55.0
Q ss_pred CCHHHHHHHHHHHHHCCCCccccccCCCCCcHHHHHHHHHhcCCCCCEEEEeccCcCCCCCccccccCCHHHH-------
Q 024050 38 VSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYV------- 110 (273)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i------- 110 (273)
.+.++..+.++.+.+.|++.|-......+......+-+.++..++...-+..+. .++..+
T Consensus 72 ls~eei~~~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~li~~Ik~~~~~i~~~~-------------~s~~ei~~~~~~~ 138 (340)
T TIGR03699 72 LSVEEILQKIEELVAYGGTQILLQGGVNPDLGLDYYEDLFRAIKARFPHIHIHS-------------FSPVEIVYIAKKE 138 (340)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEecCCCCCCCHHHHHHHHHHHHHHCCCcCCCC-------------CCHHHHHHHhccC
Confidence 578999999999999999876654332221122223333332111110011110 112211
Q ss_pred ---HHHHHHHHHHcCCCcccEE--E-e-----cCCCC-CCCHHHHHHHHHHHHHcCCc
Q 024050 111 ---RSCCEASLKRLDVDYIDLY--Y-Q-----HRVDT-SVPIEETIGEMKKLVEEGKI 156 (273)
Q Consensus 111 ---~~~~~~sL~~L~~d~iDl~--~-l-----h~~~~-~~~~~~~~~~L~~l~~~G~i 156 (273)
.+..-+.|++.|++.++.. - + +...+ ....++.+++++.+++.|.-
T Consensus 139 g~~~~e~l~~Lk~aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~ 196 (340)
T TIGR03699 139 GLSLREVLERLKEAGLDSIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGLP 196 (340)
T ss_pred CCCHHHHHHHHHHcCCCcCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCC
Confidence 1455566777788877521 0 0 11001 12466788999999999853
No 268
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=30.04 E-value=1.5e+02 Score=25.84 Aligned_cols=98 Identities=15% Similarity=0.212 Sum_probs=52.2
Q ss_pred cCCHHHHHHHHHHHHHHcCCCcccEEEe-cCCCCCCCHHHHHHHHHHHHHcC-------CccEEecCCCCHHHHHHHhhc
Q 024050 104 KGAPDYVRSCCEASLKRLDVDYIDLYYQ-HRVDTSVPIEETIGEMKKLVEEG-------KIKYIGLSEASPGTIRRAHAV 175 (273)
Q Consensus 104 ~~~~~~i~~~~~~sL~~L~~d~iDl~~l-h~~~~~~~~~~~~~~L~~l~~~G-------~ir~iGvS~~~~~~l~~~~~~ 175 (273)
.++.+.-.+-++..++.+|+++|++-.. .+| +.++++.++.+.. +++.+++... ...++.+.+.
T Consensus 15 ~~s~e~K~~i~~~L~~~~Gv~~IEvg~~~~s~-------~e~~av~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~A~~~ 86 (280)
T cd07945 15 SFSPSEKLNIAKILLQELKVDRIEVASARVSE-------GEFEAVQKIIDWAAEEGLLDRIEVLGFVDG-DKSVDWIKSA 86 (280)
T ss_pred ccCHHHHHHHHHHHHHHhCCCEEEecCCCCCH-------HHHHHHHHHHHHhhhhccccCcEEEEecCc-HHHHHHHHHC
Confidence 3556666666666679999999888753 232 1224444444322 3455555432 3456666655
Q ss_pred CCceEEeeec---------ccccccc-----cccHHHHHHHhCCeEEec
Q 024050 176 HPITAVQMEW---------SLWTRDI-----EEEIIPLCRELGIGIVPY 210 (273)
Q Consensus 176 ~~~~~~q~~~---------~l~~~~~-----~~~l~~~~~~~gi~v~a~ 210 (273)
. ...+.+.+ |+-.... ..+++++|+++|+.|..+
T Consensus 87 g-~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~ 134 (280)
T cd07945 87 G-AKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIY 134 (280)
T ss_pred C-CCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 2 12222222 2111111 145689999999876654
No 269
>PF01220 DHquinase_II: Dehydroquinase class II; InterPro: IPR001874 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. Class-II enzymes are homododecameric enzymes of about 17 kDa. They are found in some bacteria such as actinomycetales [, ] and some fungi where they act in a catabolic pathway that allows the use of quinic acid as a carbon source.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 3N8K_J 3N7A_I 3N87_F 3N8N_H 3N86_N 1H0S_A 3N59_J 1H05_A 1H0R_A 2Y71_A ....
Probab=29.97 E-value=1.6e+02 Score=22.86 Aligned_cols=81 Identities=17% Similarity=0.199 Sum_probs=55.8
Q ss_pred cCCHHHHHHHHHHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHH--cCCccEEecCCCCHHHHHHHhhcCCceEE
Q 024050 104 KGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVE--EGKIKYIGLSEASPGTIRRAHAVHPITAV 181 (273)
Q Consensus 104 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~--~G~ir~iGvS~~~~~~l~~~~~~~~~~~~ 181 (273)
..+.+.|++.+++.-+.+|+ .+|++|-. .-.+.++++.+..+ +|.|-.=|--+++.-.|.++++.....++
T Consensus 24 ~~tl~~i~~~~~~~a~~~g~-~v~~~QSN------~EGelid~I~~a~~~~dgiIINpga~thtS~Ai~DAl~~~~~P~v 96 (140)
T PF01220_consen 24 TTTLEDIEQKCKETAAELGV-EVEFFQSN------HEGELIDWIHEARDDVDGIIINPGAYTHTSIAIRDALKAISIPVV 96 (140)
T ss_dssp SSHHHHHHHHHHHHHHHTTE-EEEEEE-S------SHHHHHHHHHHHTCTTSEEEEE-GGGGHT-HHHHHHHHCCTS-EE
T ss_pred cCCHHHHHHHHHHHHHHCCC-eEEEEecC------CHHHHHHHHHHHHhhCCEEEEccchhccccHHHHHHHHcCCCCEE
Confidence 34678899999999999995 46777632 24678888888864 45554445556666678888888777788
Q ss_pred eeeccccccc
Q 024050 182 QMEWSLWTRD 191 (273)
Q Consensus 182 q~~~~l~~~~ 191 (273)
.++.|-...+
T Consensus 97 EVHiSNi~~R 106 (140)
T PF01220_consen 97 EVHISNIHAR 106 (140)
T ss_dssp EEESS-GGGS
T ss_pred EEEcCCcccc
Confidence 8888876654
No 270
>PRK03031 rnpA ribonuclease P; Reviewed
Probab=29.94 E-value=2.4e+02 Score=21.06 Aligned_cols=64 Identities=17% Similarity=0.184 Sum_probs=43.1
Q ss_pred CCCCEEEEeccCcCCCCCccccccCCHHHHHHHHHHHHHHcCC---CcccEEEecCCCCC-CCHHHHHHHHHHHHHc
Q 024050 81 PREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDV---DYIDLYYQHRVDTS-VPIEETIGEMKKLVEE 153 (273)
Q Consensus 81 ~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~---d~iDl~~lh~~~~~-~~~~~~~~~L~~l~~~ 153 (273)
+|=-+.|+-|++... ..+..|++.+++.+..+.. ...|++++..+... .+..+..+.|..|.+.
T Consensus 47 ~R~G~~VsKK~~~~A---------V~RNriKR~lRe~~R~~~~~l~~g~diVvi~r~~~~~~~~~~l~~~l~~ll~k 114 (122)
T PRK03031 47 TRFGISISQKVSKKA---------VVRNRIKRQIRAALRQLLPRIAPGWDLVIIVKPTAAECNYEQFLQELEQLLIQ 114 (122)
T ss_pred cEEEEEEecccccch---------hhhhHHHHHHHHHHHHhhhccCCCceEEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 344456666655322 3477888888888887642 46899999988764 4567777777776544
No 271
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=29.91 E-value=2.9e+02 Score=25.63 Aligned_cols=55 Identities=11% Similarity=0.062 Sum_probs=29.1
Q ss_pred ecCCCCHHHHHHHhhc-CCceEEeeecccccccc-cccHHHHHHHhCCeEEecccCC
Q 024050 160 GLSEASPGTIRRAHAV-HPITAVQMEWSLWTRDI-EEEIIPLCRELGIGIVPYSPLG 214 (273)
Q Consensus 160 GvS~~~~~~l~~~~~~-~~~~~~q~~~~l~~~~~-~~~l~~~~~~~gi~v~a~spl~ 214 (273)
-+...+++.++++++. .+..++..+.|+.-... ..++.+.|+++|+.++.=..++
T Consensus 133 ~vd~~d~e~l~~ai~~~tklV~l~sp~NPtG~v~di~~I~~la~~~gi~vIvD~t~a 189 (431)
T PRK08248 133 FVDPSDPENFEAAITDKTKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNTFA 189 (431)
T ss_pred EECCCCHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEeCCCC
Confidence 3333456666666542 34444444444433221 2567777777777777544443
No 272
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=29.86 E-value=1.5e+02 Score=27.25 Aligned_cols=74 Identities=11% Similarity=0.012 Sum_probs=58.8
Q ss_pred HHHHHHHHHHcCCccEEecCCCCHHHHHHHhhcCCceEEeeecccccccccccHHHHHHHhCCeEEecccCCCc
Q 024050 143 TIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRG 216 (273)
Q Consensus 143 ~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~~l~~~~~~~~l~~~~~~~gi~v~a~spl~~G 216 (273)
.-+.+..|.+.|.--..|+.+-+-...+.+....-..+.+-+|+.+......+..+..++.++.|.+--||+.+
T Consensus 279 ~~~~~~~L~~~g~~v~~g~l~~~d~d~~~a~~l~~~~~~~~pf~~i~~~~~~~a~~~~~~~~~vi~~~~~~g~~ 352 (402)
T PRK09536 279 AARAVSRLVAAGASVSVGPVPEGDTAAETAARVGCEAVTVPPFKPIEDSTRAEATDLIIAADAVVAAGVAAAAR 352 (402)
T ss_pred HHHHHHHHHHCCCeEEEecCcCcchhHHHHHHcCCCEEeeCCCCCCCHHHHHHHHHHHHhCCEEEECCCccCCC
Confidence 55788899999999999999876555555556555667788999998865577888888999999988888754
No 273
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=29.82 E-value=4.2e+02 Score=23.91 Aligned_cols=96 Identities=20% Similarity=0.183 Sum_probs=56.7
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCC-ccEEecCCCCHHHHHHHhhcCCceEEee
Q 024050 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGK-IKYIGLSEASPGTIRRAHAVHPITAVQM 183 (273)
Q Consensus 105 ~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~-ir~iGvS~~~~~~l~~~~~~~~~~~~q~ 183 (273)
++.+.. ..+-+.|.++|+++|.+-. |... ++-++.+..+.+.+. .+-.+++....+.++.+.+.. ++.+.+
T Consensus 19 ~s~~~k-~~ia~~L~~~Gv~~IEvG~---p~~~---~~~~e~i~~i~~~~~~~~v~~~~r~~~~di~~a~~~g-~~~i~i 90 (363)
T TIGR02090 19 LTVEQK-VEIARKLDELGVDVIEAGF---PIAS---EGEFEAIKKISQEGLNAEICSLARALKKDIDKAIDCG-VDSIHT 90 (363)
T ss_pred CCHHHH-HHHHHHHHHcCCCEEEEeC---CCCC---hHHHHHHHHHHhcCCCcEEEEEcccCHHHHHHHHHcC-cCEEEE
Confidence 444444 4555669999999999753 3211 233666666666555 444556667778888877763 223333
Q ss_pred --ecccccc------c------ccccHHHHHHHhCCeEE
Q 024050 184 --EWSLWTR------D------IEEEIIPLCRELGIGIV 208 (273)
Q Consensus 184 --~~~l~~~------~------~~~~l~~~~~~~gi~v~ 208 (273)
..|.... . .-.+.+++|+++|+.|.
T Consensus 91 ~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~ 129 (363)
T TIGR02090 91 FIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVE 129 (363)
T ss_pred EEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 2221110 1 01568889999998764
No 274
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=29.60 E-value=1.7e+02 Score=21.01 Aligned_cols=62 Identities=13% Similarity=0.267 Sum_probs=34.8
Q ss_pred HHHHHHcCCccEEecCCCCH---HHHHHHhhcCCceEEeeecccccccccccHHHHHHHhCCeEEe
Q 024050 147 MKKLVEEGKIKYIGLSEASP---GTIRRAHAVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVP 209 (273)
Q Consensus 147 L~~l~~~G~ir~iGvS~~~~---~~l~~~~~~~~~~~~q~~~~l~~~~~~~~l~~~~~~~gi~v~a 209 (273)
++++.+...+..+-+++-+. +.+.++++.....++.=+...-..+. .++++.|+++|+.++.
T Consensus 54 ~~~ll~~~~~D~V~I~tp~~~h~~~~~~~l~~g~~v~~EKP~~~~~~~~-~~l~~~a~~~~~~~~V 118 (120)
T PF01408_consen 54 LEELLADEDVDAVIIATPPSSHAEIAKKALEAGKHVLVEKPLALTLEEA-EELVEAAKEKGVKVMV 118 (120)
T ss_dssp HHHHHHHTTESEEEEESSGGGHHHHHHHHHHTTSEEEEESSSSSSHHHH-HHHHHHHHHHTSCEEE
T ss_pred HHHHHHhhcCCEEEEecCCcchHHHHHHHHHcCCEEEEEcCCcCCHHHH-HHHHHHHHHhCCEEEE
Confidence 34444444555555554332 44555666665555555554422222 7788888888887654
No 275
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=29.59 E-value=3e+02 Score=24.16 Aligned_cols=86 Identities=14% Similarity=0.050 Sum_probs=47.1
Q ss_pred CCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEecC-----CCCHHHHHHHhhcC-------CceEEeeecccccc
Q 024050 123 VDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS-----EASPGTIRRAHAVH-------PITAVQMEWSLWTR 190 (273)
Q Consensus 123 ~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS-----~~~~~~l~~~~~~~-------~~~~~q~~~~l~~~ 190 (273)
.+.-|-+++..|... ...+.++.+ ...+..+-+. ..+++.+++.++.. .+.++-.++|+.-.
T Consensus 90 ~~~~~~vlv~~P~y~----~~~~~~~~~--g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG~ 163 (363)
T PF00155_consen 90 INPGDTVLVPDPCYP----SYIEAARLL--GAEVIPVPLDSENDFHLDPEALEEALDELPSKGPRPKAVLICNPNNPTGS 163 (363)
T ss_dssp SSTTSEEEEEESSST----HHHHHHHHT--TSEEEEEEEEETTTTEETHHHHHHHHHTSHTTTETEEEEEEESSBTTTTB
T ss_pred ccccccceecCCccc----ccccccccc--Cceeeeccccccccccccccccccccccccccccccceeeeccccccccc
Confidence 344567777766432 122222221 2224444433 45778888877652 24445556665443
Q ss_pred cc----cccHHHHHHHhCCeEEecccCC
Q 024050 191 DI----EEEIIPLCRELGIGIVPYSPLG 214 (273)
Q Consensus 191 ~~----~~~l~~~~~~~gi~v~a~spl~ 214 (273)
.. -.+++++|+++|+-++.=....
T Consensus 164 ~~~~~~l~~l~~~~~~~~~~ii~De~y~ 191 (363)
T PF00155_consen 164 VLSLEELRELAELAREYNIIIIVDEAYS 191 (363)
T ss_dssp B--HHHHHHHHHHHHHTTSEEEEEETTT
T ss_pred ccccccccchhhhhcccccceeeeecee
Confidence 21 1667788999999998544433
No 276
>PRK07328 histidinol-phosphatase; Provisional
Probab=29.58 E-value=3.6e+02 Score=23.02 Aligned_cols=107 Identities=14% Similarity=0.147 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHCCCCccccccCCCC------------CcHHHHHHHHHhc-------CCCCCEEEEeccCcCCCCCcccc
Q 024050 42 DGISMIKHAFSKGITFFDTADVYGQ------------NANEVLLGKALKQ-------LPREKIQVATKFGIAGIGVAGVI 102 (273)
Q Consensus 42 ~~~~~l~~A~~~Gin~~DtA~~Yg~------------g~se~~lg~~l~~-------~~r~~~~i~tK~~~~~~~~~~~~ 102 (273)
...+++++|.+.|+..+=.+++... +.+..-+-..++. ..+=+|.+..-+...
T Consensus 19 ~~ee~v~~A~~~Gl~~i~~TdH~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~l~~~y~~i~Il~GiE~~~~-------- 90 (269)
T PRK07328 19 TPEEYVQAARRAGLKEIGFTDHLPMYFLPPEWRDPGLAMRLEELPFYVSEVERLRARFPDLYVRLGIEADYH-------- 90 (269)
T ss_pred CHHHHHHHHHHCCCCEEEEecCCCCCCcCcccccccccccHHHHHHHHHHHHHHHHHcCCCeEEEEEEeccc--------
Confidence 4778999999999987665555321 0111112222222 111233333333221
Q ss_pred ccCCHHHHHHHHHHHHHHcCCCcccEEEecCCCCC-------------CCHHH----HHHHHHHHHHcCCccEEecC
Q 024050 103 VKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS-------------VPIEE----TIGEMKKLVEEGKIKYIGLS 162 (273)
Q Consensus 103 ~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~-------------~~~~~----~~~~L~~l~~~G~ir~iGvS 162 (273)
+ .....+++.|++...||+ +..+|..+.. ...++ .++.+.++++.|.+.-||=-
T Consensus 91 ----~-~~~~~~~~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~ 161 (269)
T PRK07328 91 ----P-GTEEFLERLLEAYPFDYV-IGSVHYLGAWGFDNPDFVAEYEERDLDELYRRYFALVEQAARSGLFDIIGHP 161 (269)
T ss_pred ----C-CcHHHHHHHHHhCCCCeE-EEEEeecCCcCCCChhHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCEeeCc
Confidence 1 124556667777777777 8888986421 11222 34467778888888777644
No 277
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=29.54 E-value=1.3e+02 Score=25.56 Aligned_cols=49 Identities=20% Similarity=0.169 Sum_probs=29.5
Q ss_pred HHHHHHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHH-HHHcCCccEEe
Q 024050 111 RSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKK-LVEEGKIKYIG 160 (273)
Q Consensus 111 ~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~-l~~~G~ir~iG 160 (273)
.+.++..|+-.| +|||.+=+-|-....-.++.++...+ +++-|.--+.|
T Consensus 11 ~~~~~d~Le~~g-~yID~lKfg~Gt~~l~~~~~l~eki~la~~~~V~v~~G 60 (237)
T TIGR03849 11 PKFVEDYLKVCG-DYITFVKFGWGTSALIDRDIVKEKIEMYKDYGIKVYPG 60 (237)
T ss_pred HHHHHHHHHHhh-hheeeEEecCceEeeccHHHHHHHHHHHHHcCCeEeCC
Confidence 357778888888 89999999877654333344433333 33344433334
No 278
>smart00148 PLCXc Phospholipase C, catalytic domain (part); domain X. Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs.
Probab=29.28 E-value=1.4e+02 Score=22.68 Aligned_cols=49 Identities=6% Similarity=-0.076 Sum_probs=31.6
Q ss_pred HHHHHHHHHCCCCccccccCCC--------CCc----------HHHHHHHHHhcCCCCCEEEEeccC
Q 024050 44 ISMIKHAFSKGITFFDTADVYG--------QNA----------NEVLLGKALKQLPREKIQVATKFG 92 (273)
Q Consensus 44 ~~~l~~A~~~Gin~~DtA~~Yg--------~g~----------se~~lg~~l~~~~r~~~~i~tK~~ 92 (273)
...+..+++.|+|+||.--.++ +|. .-..+.+++...+.+-|++.-|-.
T Consensus 31 ~~~i~~qL~~GvR~~dirv~~~~~~~~~v~Hg~~~~~~~~~~dvL~~i~~fl~~~p~e~VIl~l~~~ 97 (135)
T smart00148 31 VEGYIQALDHGCRCVELDCWDGPDGEPVIYHGHTFTLPIKLSEVLEAIKDFAFVTSPYPVILSLENH 97 (135)
T ss_pred HHHHHHHHHhCCCEEEEEcccCCCCCEEEEECCcccccEEHHHHHHHHHHHHHhCCCCcEEEeehhh
Confidence 5588889999999998764443 121 224455555546667777777743
No 279
>PRK01313 rnpA ribonuclease P; Reviewed
Probab=29.28 E-value=2.6e+02 Score=21.27 Aligned_cols=62 Identities=21% Similarity=0.231 Sum_probs=42.4
Q ss_pred CCCCEEEEeccCcCCCCCccccccCCHHHHHHHHHHHHHHcCC----CcccEEEecCCCCC-CCHHHHHHHHHHHHH
Q 024050 81 PREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDV----DYIDLYYQHRVDTS-VPIEETIGEMKKLVE 152 (273)
Q Consensus 81 ~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~----d~iDl~~lh~~~~~-~~~~~~~~~L~~l~~ 152 (273)
+|=-+.|+-|++.. ..+..|+..+++++..+.. ...|++++..+... .+..++.+.|..+.+
T Consensus 47 ~RvG~~VSKKvG~A----------V~RNRiKR~lRE~fR~~~~~~~~~g~DiVivar~~~~~~~~~~l~~~L~~~l~ 113 (129)
T PRK01313 47 PRVGFTVTKKNGNA----------VERNRIRRRLKEAVRLHAGFDMAPGTDYVIVARRDALNAPFSQLTEELSRRIE 113 (129)
T ss_pred cEEEEEEecccCcc----------hHHHHHHHHHHHHHHHhchhccCCCceEEEEECcccccCCHHHHHHHHHHHHH
Confidence 45556777777643 3477888888888887643 56899999988754 445566666665544
No 280
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=29.22 E-value=62 Score=30.45 Aligned_cols=50 Identities=24% Similarity=0.311 Sum_probs=35.8
Q ss_pred cCCCCCcccCcc-eeccccCCCCCCCCCCHHHHHHHHHHHHHCCCCc---cccccCCC
Q 024050 12 KLGTQGLEVSKL-GYGCMNLSGGYSSPVSEEDGISMIKHAFSKGITF---FDTADVYG 65 (273)
Q Consensus 12 ~lg~sg~~vs~l-glG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~---~DtA~~Yg 65 (273)
.|+=.-.+.|.| ..|+.+....| +.+++.+++++|..+|||. |||-.+-|
T Consensus 224 SFPle~~~~PeL~~kGaYs~~~vY----T~eDv~evV~yarlRGIRVlpEfD~PgHt~ 277 (542)
T KOG2499|consen 224 SFPLESPTFPELHRKGAYSPRHVY----TREDVSEVVEYARLRGIRVLPEFDTPGHTG 277 (542)
T ss_pred CCccccCCchhhhhcCCCCcceee----cHHHHHHHHHHHHhccceeeecccCCcccc
Confidence 344345667777 77776543333 7899999999999999995 67765544
No 281
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=29.17 E-value=3.9e+02 Score=23.38 Aligned_cols=58 Identities=17% Similarity=0.137 Sum_probs=42.0
Q ss_pred HHHHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEecCCCCHHHHHHHh
Q 024050 113 CCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAH 173 (273)
Q Consensus 113 ~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~ 173 (273)
...+.+...+...=|+++.-...... .+++++++.+++.| ++-|++++.....+.+..
T Consensus 115 ~~~~~l~a~~l~~~DvvI~IS~SG~T--~~vi~al~~Ak~~G-a~~IaIT~~~~s~La~~a 172 (296)
T PRK12570 115 LGAQDLKAIGLTADDVVVGIAASGRT--PYVIGALEYAKQIG-ATTIALSCNPDSPIAKIA 172 (296)
T ss_pred HHHHHHHHcCCCCCCEEEEEeCCCCC--HHHHHHHHHHHHCC-CeEEEEECCCCChhHHhC
Confidence 34445555666667999987776554 45999999999998 677999987666565533
No 282
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=29.08 E-value=4.4e+02 Score=23.93 Aligned_cols=25 Identities=8% Similarity=0.195 Sum_probs=21.7
Q ss_pred CCHHHHHHHHHHHHHCCCCcccccc
Q 024050 38 VSEEDGISMIKHAFSKGITFFDTAD 62 (273)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gin~~DtA~ 62 (273)
.+.++..++++.-.+.||..|+...
T Consensus 23 ~s~e~k~~ia~~L~~~GV~~IE~G~ 47 (378)
T PRK11858 23 FTNEEKLAIARMLDEIGVDQIEAGF 47 (378)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEeC
Confidence 4788999999999999999999864
No 283
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=29.02 E-value=3.6e+02 Score=24.55 Aligned_cols=90 Identities=14% Similarity=0.175 Sum_probs=57.2
Q ss_pred EEEecCCCC------------CCCHHHHHHHHHH-HHHcC---CccEEecC--CCCHHHHHHHhh---cCCceEEeeecc
Q 024050 128 LYYQHRVDT------------SVPIEETIGEMKK-LVEEG---KIKYIGLS--EASPGTIRRAHA---VHPITAVQMEWS 186 (273)
Q Consensus 128 l~~lh~~~~------------~~~~~~~~~~L~~-l~~~G---~ir~iGvS--~~~~~~l~~~~~---~~~~~~~q~~~~ 186 (273)
.+.||.+++ ..+++++++++.+ +.+.| +|+++=+. |.+.+.++++.+ ..+..++-++||
T Consensus 237 aiSL~a~~~e~r~~i~P~~~~~~~l~~l~~~i~~~~~~~g~~V~ieyvLI~GvNDs~eda~~L~~~l~~~~~~VnlIpyn 316 (368)
T PRK14456 237 AVSLHSADQEKRERLMPQAARDYPLDELREALIGYASKTGEPVTLVYMLLEGINDSPEDARKLIRFASRFFCKINLIDYN 316 (368)
T ss_pred EEEecCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHhcCCeEEEEEEEEcCCCCCHHHHHHHHHHHhcCCCeeEEeeec
Confidence 367888753 2356788888875 45556 35555444 344444554443 345677778999
Q ss_pred cccccc--------cccHHHHHHHhCCeEEecccCCCcc
Q 024050 187 LWTRDI--------EEEIIPLCRELGIGIVPYSPLGRGF 217 (273)
Q Consensus 187 l~~~~~--------~~~l~~~~~~~gi~v~a~spl~~G~ 217 (273)
.+.... .....+..+++|+.|......+.-+
T Consensus 317 ~~~~~~~~~ps~e~i~~F~~~L~~~Gi~vtvR~~~G~di 355 (368)
T PRK14456 317 SIVNIKFEPVCSSTRERFRDRLLDAGLQVTVRKSYGTTI 355 (368)
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHCCCcEEeeCCCCcch
Confidence 876421 1556677788899999988877543
No 284
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=29.02 E-value=2.2e+02 Score=26.21 Aligned_cols=49 Identities=16% Similarity=0.101 Sum_probs=31.5
Q ss_pred HHHHHHHhhc----CCceEEeeeccccccccc--ccHHHHHHHhCCeEEecccCC
Q 024050 166 PGTIRRAHAV----HPITAVQMEWSLWTRDIE--EEIIPLCRELGIGIVPYSPLG 214 (273)
Q Consensus 166 ~~~l~~~~~~----~~~~~~q~~~~l~~~~~~--~~l~~~~~~~gi~v~a~spl~ 214 (273)
++.++++++. .-+..+|-+--+.-...+ ..+.+.|.++|+-+|.=..-.
T Consensus 174 i~al~~ai~~~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQt 228 (404)
T COG4992 174 IEALEAAIDEDTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQT 228 (404)
T ss_pred HHHHHHHhccCeEEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEecccc
Confidence 4555655554 223455666666555443 778899999998888665554
No 285
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=28.91 E-value=4.4e+02 Score=23.82 Aligned_cols=25 Identities=12% Similarity=0.215 Sum_probs=16.1
Q ss_pred CCCHHHHHHHHH-------HHHHCCCCccccc
Q 024050 37 PVSEEDGISMIK-------HAFSKGITFFDTA 61 (273)
Q Consensus 37 ~~~~~~~~~~l~-------~A~~~Gin~~DtA 61 (273)
.++.+|..++++ .|.++|+..+..-
T Consensus 148 ~mt~~eI~~ii~~f~~AA~rA~~AGfDGVEIh 179 (362)
T PRK10605 148 ALELEEIPGIVNDFRQAIANAREAGFDLVELH 179 (362)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEc
Confidence 456666666654 5667898866553
No 286
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=28.66 E-value=2.2e+02 Score=23.73 Aligned_cols=98 Identities=19% Similarity=0.142 Sum_probs=58.9
Q ss_pred CHH-HHHHHHHHHHHCCCCccccccCCCCCcHHHHHHHHHhcCCCCCEEEEeccCcCCCCCccccccCCHHHH-----HH
Q 024050 39 SEE-DGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYV-----RS 112 (273)
Q Consensus 39 ~~~-~~~~~l~~A~~~Gin~~DtA~~Yg~g~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i-----~~ 112 (273)
+.. +..+.++.|.+.|++-+=+.+.|. ....+.+. ..+-.+-+..++..... ..+.- ..
T Consensus 16 ~~~~~~~~~~~~a~~~~~~av~v~p~~~-----~~~~~~~~-~~~~~~~~vi~fp~g~~---------~~~~k~~~~~~~ 80 (236)
T PF01791_consen 16 TGEEDIKKLCREAIEYGFDAVCVTPGYV-----KPAAELLA-GSGVKVGLVIGFPFGTS---------TTEPKGYDQIVA 80 (236)
T ss_dssp HHHHHHHHHHHHHHHHTSSEEEEEGGGH-----HHHHHHST-TSTSEEEEEESTTTSSS---------THHHHTCEEEHH
T ss_pred CchhhHHHHHHHHHHhCCCEEEECHHHH-----HHHHHHhh-ccccccceEEEeCCCCC---------ccccccccchHH
Confidence 344 899999999999999888887774 22333343 22235666666654331 12222 45
Q ss_pred HHHHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHH
Q 024050 113 CCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVE 152 (273)
Q Consensus 113 ~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~ 152 (273)
++++. -++|.|-+|++.-..+..........+.+.++++
T Consensus 81 ~ve~A-~~~GAd~vd~vi~~~~~~~~~~~~~~~~i~~v~~ 119 (236)
T PF01791_consen 81 EVEEA-IRLGADEVDVVINYGALGSGNEDEVIEEIAAVVE 119 (236)
T ss_dssp HHHHH-HHTT-SEEEEEEEHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHH-HHcCCceeeeeccccccccccHHHHHHHHHHHHH
Confidence 56665 4589999999998855443334445555544443
No 287
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=28.62 E-value=68 Score=26.65 Aligned_cols=100 Identities=20% Similarity=0.191 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHHHHC-CCCccccccCCCCCcHHHHHHHHHhcCCCCCEEEEeccCcCCCCCccccccCCHHHHHHHHHHH
Q 024050 39 SEEDGISMIKHAFSK-GITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEAS 117 (273)
Q Consensus 39 ~~~~~~~~l~~A~~~-Gin~~DtA~~Yg~g~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~s 117 (273)
+.+++..+.+...+. |+=|...++-|= +.+...+..+..+.-. +++-.. +.+.+ .+.+.
T Consensus 11 ~~eda~~a~~~gad~iG~If~~~SpR~V---s~~~a~~i~~~v~~~~-----~VgVf~--------n~~~~----~i~~i 70 (208)
T COG0135 11 RLEDAKAAAKAGADYIGFIFVPKSPRYV---SPEQAREIASAVPKVK-----VVGVFV--------NESIE----EILEI 70 (208)
T ss_pred CHHHHHHHHHcCCCEEEEEEcCCCCCcC---CHHHHHHHHHhCCCCC-----EEEEEC--------CCCHH----HHHHH
Confidence 567777766664544 665666677774 4555555555433211 222111 12333 44445
Q ss_pred HHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEecCCCC
Q 024050 118 LKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEAS 165 (273)
Q Consensus 118 L~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~ 165 (273)
++.++ +|++|||...+ .+.++.|.+...-..+++|.++.-.
T Consensus 71 ~~~~~---ld~VQlHG~e~----~~~~~~l~~~~~~~v~kai~v~~~~ 111 (208)
T COG0135 71 AEELG---LDAVQLHGDED----PEYIDQLKEELGVPVIKAISVSEEG 111 (208)
T ss_pred HHhcC---CCEEEECCCCC----HHHHHHHHhhcCCceEEEEEeCCcc
Confidence 55555 79999999743 2333333333234588999998643
No 288
>PHA02128 hypothetical protein
Probab=28.51 E-value=1.8e+02 Score=21.37 Aligned_cols=69 Identities=14% Similarity=0.230 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHcCCccEEecCCCCHHHHHHHhh-----------------c-CCceEE---eeecccccccccccHHHHH
Q 024050 142 ETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHA-----------------V-HPITAV---QMEWSLWTRDIEEEIIPLC 200 (273)
Q Consensus 142 ~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~-----------------~-~~~~~~---q~~~~l~~~~~~~~l~~~~ 200 (273)
..+..-.++..+|-+|-|-+...+-..+..... . ..+.+. ..+|.+-.+...+++.+|+
T Consensus 61 gl~~lane~~aqgg~r~itmn~ankrhv~dmv~~~wrgdi~ist~selt~~cp~vkflmideseytltsrh~rqeiydwa 140 (151)
T PHA02128 61 GLLHLANEVSAQGGARIITMNSANKRHVQDMVSYQWRGDIRISTISELTDRCPKVKFLMIDESEYTLTSRHQRQEIYDWA 140 (151)
T ss_pred hHHHHHHHHHhcCCeEEEEeccchhhHHHHHhcccccCceEEeeHHHHhccCCeeEEEEEcchhceecchhhHHHHHhhc
Confidence 456666788888888888776655444433321 1 122233 3367776666568999999
Q ss_pred HHhCCeEEec
Q 024050 201 RELGIGIVPY 210 (273)
Q Consensus 201 ~~~gi~v~a~ 210 (273)
..||+.++.+
T Consensus 141 gthgvefvim 150 (151)
T PHA02128 141 GTHGVEFVIM 150 (151)
T ss_pred ccCceEEEEe
Confidence 9999988764
No 289
>PRK10508 hypothetical protein; Provisional
Probab=28.24 E-value=99 Score=27.63 Aligned_cols=41 Identities=15% Similarity=0.160 Sum_probs=27.8
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHH
Q 024050 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKL 150 (273)
Q Consensus 105 ~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l 150 (273)
.+++.+.+.+++..+++|+|.+ +++.+. .+.++.++.++-|
T Consensus 286 Gtpe~V~~kl~~l~~~~g~del-~~~~~~----~~~e~~~~S~~ll 326 (333)
T PRK10508 286 GDKAKVRHGLQSILRETQADEI-MVNGQI----FDHQARLHSFELA 326 (333)
T ss_pred eCHHHHHHHHHHHHHHHCcCEE-EEECCC----CCHHHHHHHHHHH
Confidence 5799999999999999998887 333333 2444444444433
No 290
>PRK14847 hypothetical protein; Provisional
Probab=28.24 E-value=1.9e+02 Score=25.90 Aligned_cols=98 Identities=19% Similarity=0.215 Sum_probs=56.2
Q ss_pred HHHHHHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCC----ccEEecCCCCHHHHHHHhhcC-----CceEE
Q 024050 111 RSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGK----IKYIGLSEASPGTIRRAHAVH-----PITAV 181 (273)
Q Consensus 111 ~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~----ir~iGvS~~~~~~l~~~~~~~-----~~~~~ 181 (273)
+-.+-+.|.++|+|.|.+-+ |... ++-+++..++.+.++ ++-.+++....+.++..++.. ...-+
T Consensus 56 Kl~IA~~L~~lGVd~IEvG~---Pa~s---~~e~e~ir~I~~~~~~~~~~~i~~~~r~~~~dId~a~e~~~~~~~~~Vhi 129 (333)
T PRK14847 56 KLRLFEQLVAVGLKEIEVAF---PSAS---QTDFDFVRKLIDERRIPDDVTIEALTQSRPDLIARTFEALAGSPRAIVHL 129 (333)
T ss_pred HHHHHHHHHHcCCCEEEeeC---CCCC---HHHHHHHHHHHHhCCCCCCcEEEEEecCcHHHHHHHHHHhCCCCCCEEEE
Confidence 45677779999977766543 3221 334677777777764 566677777777676665542 11222
Q ss_pred eeeccccccc------c------cccHHHHHHHhCC---e---EEecccCC
Q 024050 182 QMEWSLWTRD------I------EEEIIPLCRELGI---G---IVPYSPLG 214 (273)
Q Consensus 182 q~~~~l~~~~------~------~~~l~~~~~~~gi---~---v~a~spl~ 214 (273)
-++.|.+... . -.+.++++++++. + .+.++|-.
T Consensus 130 ~~p~Sd~h~~~kl~~s~~~vl~~~~~~v~~Ak~~~~~~~g~~~~V~~~~ED 180 (333)
T PRK14847 130 YNPIAPQWRRIVFGMSRAEIKEIALAGTRQIRALADANPGTQWIYEYSPET 180 (333)
T ss_pred EecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhccccCCCceEEEEeeec
Confidence 2233322211 0 1567788999855 2 35665554
No 291
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=28.23 E-value=93 Score=27.29 Aligned_cols=49 Identities=18% Similarity=0.186 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHcCCCcc--cEEEecCCCCCCCHHHHHHHHHHHHHcCCccE
Q 024050 107 PDYVRSCCEASLKRLDVDYI--DLYYQHRVDTSVPIEETIGEMKKLVEEGKIKY 158 (273)
Q Consensus 107 ~~~i~~~~~~sL~~L~~d~i--Dl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~ 158 (273)
.+...+.+.+.+++||+.+- ..+.-+.+ ...+.+.+.+.+|.++|.|-.
T Consensus 81 ~~~~~~~~~~~l~~lgI~~Dw~~~~~T~~~---~~~~~v~~~f~~L~~~G~iY~ 131 (312)
T cd00668 81 VEEMSGEHKEDFRRLGISYDWSDEYITTEP---EYSKAVELIFSRLYEKGLIYR 131 (312)
T ss_pred HHHHHHHHHHHHHHhCccccCCCCeECCCH---HHHHHHHHHHHHHHHCCCEEe
Confidence 56678889999999997443 33333333 235678999999999999864
No 292
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=28.05 E-value=4.6e+02 Score=23.77 Aligned_cols=99 Identities=11% Similarity=0.078 Sum_probs=53.4
Q ss_pred HHHHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEecCCCCHHHHHHHhhc-CCceEEeeeccccccc
Q 024050 113 CCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAV-HPITAVQMEWSLWTRD 191 (273)
Q Consensus 113 ~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~-~~~~~~q~~~~l~~~~ 191 (273)
++...+..| ++.=|-+++..+.. ..++..+..+.+.-.++..-+...+++.+++++.. .+..++..+.|+.-..
T Consensus 88 Ai~~~l~al-l~~Gd~Vl~~~~~y----~~t~~~~~~~~~~~gi~~~~~d~~d~e~l~~~i~~~tklV~ie~p~NPtg~~ 162 (388)
T PRK07811 88 ATDCLLRAV-LRPGDHIVIPNDAY----GGTFRLIDKVFTRWGVEYTPVDLSDLDAVRAAITPRTKLIWVETPTNPLLSI 162 (388)
T ss_pred HHHHHHHHH-hCCCCEEEEcCCCc----hHHHHHHHHhCcCCCeEEEEeCCCCHHHHHHhcCcCCeEEEEECCCCCccee
Confidence 333444333 23335566655432 23343333332221223233333567778777643 4566666777765433
Q ss_pred cc-ccHHHHHHHhCCeEEecccCCCc
Q 024050 192 IE-EEIIPLCRELGIGIVPYSPLGRG 216 (273)
Q Consensus 192 ~~-~~l~~~~~~~gi~v~a~spl~~G 216 (273)
.. ..+.+.|+++|+.++.=..++.+
T Consensus 163 ~dl~~I~~la~~~gi~lIvD~a~a~~ 188 (388)
T PRK07811 163 TDIAALAELAHDAGAKVVVDNTFASP 188 (388)
T ss_pred cCHHHHHHHHHHcCCEEEEECCCCcc
Confidence 22 78899999999999865555444
No 293
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=27.97 E-value=1e+02 Score=26.28 Aligned_cols=87 Identities=10% Similarity=0.015 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHCCCCccccccCCCCCcHHHHHHHHHhcCCCCCEEEEeccCcCCCCCccccccCCHHHHHHHHHHHHH
Q 024050 40 EEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLK 119 (273)
Q Consensus 40 ~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~ 119 (273)
+....+.++.+-+.|++.+..++.+-. -++...-++++......+.+.+-++...+ ......+++.+.+++++-|+
T Consensus 83 q~~~~~yl~~~k~lGf~~IEiSdGti~-l~~~~r~~~I~~~~~~Gf~v~~EvG~K~~---~~~~~~~~~~~i~~~~~dLe 158 (244)
T PF02679_consen 83 QGKFDEYLEECKELGFDAIEISDGTID-LPEEERLRLIRKAKEEGFKVLSEVGKKDP---ESDFSLDPEELIEQAKRDLE 158 (244)
T ss_dssp TT-HHHHHHHHHHCT-SEEEE--SSS----HHHHHHHHHHHCCTTSEEEEEES-SSH---HHHTT--CCHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHcCCCEEEecCCcee-CCHHHHHHHHHHHHHCCCEEeecccCCCc---hhcccCCHHHHHHHHHHHHH
Confidence 345667777778888888888876642 35555566676555666888888886552 12223446778888888888
Q ss_pred HcCCCcccEEEecCC
Q 024050 120 RLDVDYIDLYYQHRV 134 (273)
Q Consensus 120 ~L~~d~iDl~~lh~~ 134 (273)
. | .|.+++..-
T Consensus 159 A-G---A~~ViiEar 169 (244)
T PF02679_consen 159 A-G---ADKVIIEAR 169 (244)
T ss_dssp H-T---ECEEEE--T
T ss_pred C-C---CCEEEEeee
Confidence 5 5 577777654
No 294
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=27.89 E-value=4.4e+02 Score=23.53 Aligned_cols=38 Identities=16% Similarity=0.331 Sum_probs=23.1
Q ss_pred CCCHHHHHHHH-------HHHHHCCCCccccccCCCCCcHHHHHHHHHhc
Q 024050 37 PVSEEDGISMI-------KHAFSKGITFFDTADVYGQNANEVLLGKALKQ 79 (273)
Q Consensus 37 ~~~~~~~~~~l-------~~A~~~Gin~~DtA~~Yg~g~se~~lg~~l~~ 79 (273)
.++.++..+++ +.|.++|+..++.-...| -++.++|..
T Consensus 141 ~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahG-----yLl~qFlSp 185 (338)
T cd02933 141 ALTTEEIPGIVADFRQAARNAIEAGFDGVEIHGANG-----YLIDQFLRD 185 (338)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccc-----hhHHHhcCC
Confidence 35666655554 456678999888754443 246666653
No 295
>PRK00208 thiG thiazole synthase; Reviewed
Probab=27.84 E-value=3.9e+02 Score=22.91 Aligned_cols=105 Identities=14% Similarity=0.075 Sum_probs=72.2
Q ss_pred cCCHHHHHHHHHHHHHHcCCCcccEEEecCCCCC-CCHHHHHHHHHHHHHcCCccEEecCCCCHHHHHHHhhcCCceEEe
Q 024050 104 KGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS-VPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHPITAVQ 182 (273)
Q Consensus 104 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~-~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q 182 (273)
+.+.+...+..+-..|-++++.|=|=.+.++... .++.+++++.++|+++|.+- +=+++-++...+++.+.. +++++
T Consensus 72 ~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~v-lpyc~~d~~~ak~l~~~G-~~~vm 149 (250)
T PRK00208 72 CRTAEEAVRTARLAREALGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVV-LPYCTDDPVLAKRLEEAG-CAAVM 149 (250)
T ss_pred CCCHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEE-EEEeCCCHHHHHHHHHcC-CCEeC
Confidence 5678888888888889999998888888776654 44789999999999999964 557787887777766663 33332
Q ss_pred eeccccccc--c-cccHHHHHHH-hCCeEEec
Q 024050 183 MEWSLWTRD--I-EEEIIPLCRE-LGIGIVPY 210 (273)
Q Consensus 183 ~~~~l~~~~--~-~~~l~~~~~~-~gi~v~a~ 210 (273)
.-=+++... . ..+.++...+ .++.|++-
T Consensus 150 Plg~pIGsg~gi~~~~~i~~i~e~~~vpVIve 181 (250)
T PRK00208 150 PLGAPIGSGLGLLNPYNLRIIIEQADVPVIVD 181 (250)
T ss_pred CCCcCCCCCCCCCCHHHHHHHHHhcCCeEEEe
Confidence 211222211 0 1445666666 47888875
No 296
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=27.77 E-value=1.5e+02 Score=23.66 Aligned_cols=64 Identities=20% Similarity=0.210 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHcCCCc----ccEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEecCCCCHHHHHHHhhc
Q 024050 110 VRSCCEASLKRLDVDY----IDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAV 175 (273)
Q Consensus 110 i~~~~~~sL~~L~~d~----iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~ 175 (273)
..+.++..++++|++. ++.+. ..........++.+.|++|++.| ++-.-+||.+.+.+...++.
T Consensus 61 ~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~~L~~~g-~~~~i~Sn~~~~~~~~~l~~ 128 (198)
T TIGR01428 61 TREALRYLLGRLGLEDDESAADRLA-EAYLRLPPHPDVPAGLRALKERG-YRLAILSNGSPAMLKSLVKH 128 (198)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHH-HHHhcCCCCCCHHHHHHHHHHCC-CeEEEEeCCCHHHHHHHHHH
Confidence 3556667777777541 11111 11111233457788899999988 44455788877776666554
No 297
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=27.77 E-value=4.2e+02 Score=23.30 Aligned_cols=120 Identities=13% Similarity=0.124 Sum_probs=67.8
Q ss_pred CCCHHHHHHHHHHHHHCCCCccccccCCC--CCcHHHHHHHHHhcCC-CCCEEEEeccCcCCCCCccccccCCHHHHHHH
Q 024050 37 PVSEEDGISMIKHAFSKGITFFDTADVYG--QNANEVLLGKALKQLP-REKIQVATKFGIAGIGVAGVIVKGAPDYVRSC 113 (273)
Q Consensus 37 ~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg--~g~se~~lg~~l~~~~-r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~ 113 (273)
.++.++..++++.+.+.|+..|.-+..-. .-.-.+++.. +++.+ -+++.|+|-.. . +.+
T Consensus 42 ~ls~eei~~~i~~~~~~gv~~V~ltGGEPll~~~l~~li~~-i~~~~gi~~v~itTNG~-l---------------l~~- 103 (334)
T TIGR02666 42 LLTFEEIERLVRAFVGLGVRKVRLTGGEPLLRKDLVELVAR-LAALPGIEDIALTTNGL-L---------------LAR- 103 (334)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECccccccCCHHHHHHH-HHhcCCCCeEEEEeCch-h---------------HHH-
Confidence 46789999999999999988776442100 1122333333 33222 22667777421 0 112
Q ss_pred HHHHHHHcCCCcccEEEecCCCC---------CCCHHHHHHHHHHHHHcCCc----cEEecCCCCHHHHHHHhhc
Q 024050 114 CEASLKRLDVDYIDLYYQHRVDT---------SVPIEETIGEMKKLVEEGKI----KYIGLSEASPGTIRRAHAV 175 (273)
Q Consensus 114 ~~~sL~~L~~d~iDl~~lh~~~~---------~~~~~~~~~~L~~l~~~G~i----r~iGvS~~~~~~l~~~~~~ 175 (273)
.-+.|.+.|++++- +.++..++ ....+.++++++.+++.|.- ..+-+.+.+.+++.++++.
T Consensus 104 ~~~~L~~~gl~~v~-ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v~in~vv~~g~n~~ei~~l~~~ 177 (334)
T TIGR02666 104 HAKDLKEAGLKRVN-VSLDSLDPERFAKITRRGGRLEQVLAGIDAALAAGLEPVKLNTVVMRGVNDDEIVDLAEF 177 (334)
T ss_pred HHHHHHHcCCCeEE-EecccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHHHH
Confidence 23446666765543 33455433 12468899999999999863 2233345666666665543
No 298
>PF03599 CdhD: CO dehydrogenase/acetyl-CoA synthase delta subunit; InterPro: IPR016041 This entry represents a conserved region predicted to form a TIM alpha/beta barrel, and is found in the delta subunit of a number of CO dehydrogenase/acetyl-CoA synthase enzymes.; PDB: 2H9A_B 2YCL_B 4DJF_E 4DJD_C 4DJE_C.
Probab=27.76 E-value=2.7e+02 Score=25.54 Aligned_cols=83 Identities=17% Similarity=0.193 Sum_probs=47.5
Q ss_pred cccEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEecCCCCHHHHHHHhhcC---CceEEeeecccccccccccHHHHHH
Q 024050 125 YIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVH---PITAVQMEWSLWTRDIEEEIIPLCR 201 (273)
Q Consensus 125 ~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~---~~~~~q~~~~l~~~~~~~~l~~~~~ 201 (273)
.+|++.|+.-+.+. .++..+..++..+.-.+ -+=+...+++.++++++.. ++-. |..-..+. +++.+.|+
T Consensus 69 ~~D~Ialr~~S~DP-ae~fa~~vk~V~~a~~~-PLIL~~~D~evl~aale~~~~~kpLL----~aAt~eNy-k~m~~lA~ 141 (386)
T PF03599_consen 69 GADMIALRLESGDP-AEEFAKAVKKVAEAVDV-PLILCGCDPEVLKAALEACAGKKPLL----YAATEENY-KAMAALAK 141 (386)
T ss_dssp E-SEEEEE-GGGST-HHHHHHHHHHHHHC-SS-EEEEESSHHHHHHHHHHHTTTS--EE----EEEBTTTH-HHHHHHHH
T ss_pred cccEEEEEecCCCh-HHHHHHHHHHHHHhcCC-CEEEEeCCHHHHHHHHHHhCcCCcEE----eEcCHHHH-HHHHHHHH
Confidence 67888888765432 45566666666554333 3334444888888887762 2211 11111122 77889999
Q ss_pred HhCCeEEecccCC
Q 024050 202 ELGIGIVPYSPLG 214 (273)
Q Consensus 202 ~~gi~v~a~spl~ 214 (273)
++|..+++.+|..
T Consensus 142 ~y~~pl~v~sp~D 154 (386)
T PF03599_consen 142 EYGHPLIVSSPID 154 (386)
T ss_dssp HCT-EEEEE-SSC
T ss_pred HcCCeEEEEeccc
Confidence 9999999998765
No 299
>PRK04820 rnpA ribonuclease P; Reviewed
Probab=27.68 E-value=2.9e+02 Score=21.44 Aligned_cols=64 Identities=13% Similarity=0.161 Sum_probs=41.4
Q ss_pred CCCCEEEEeccCcCCCCCccccccCCHHHHHHHHHHHHHHcC--CCcccEEEecCCCCC-CCHHHHHHHHHHHHHc
Q 024050 81 PREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLD--VDYIDLYYQHRVDTS-VPIEETIGEMKKLVEE 153 (273)
Q Consensus 81 ~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~--~d~iDl~~lh~~~~~-~~~~~~~~~L~~l~~~ 153 (273)
.|=-+.|+-|++... ..+..|++.+++++..+. +...|++++..+... .+..++.+.|.+|.+.
T Consensus 48 ~RlG~sVSKKvg~~A---------V~RNRiKR~lRE~fR~~~~~l~~~DiVviar~~~~~~~~~~l~~~l~~LL~k 114 (145)
T PRK04820 48 PRLGLAVSRKVDTRA---------VGRNRIKRVLREAMRQLLPELAPGDYVVVARSAAAKASNPQLRDAFLRLLRR 114 (145)
T ss_pred cEEEEEEeccccCcc---------hhHHHHHHHHHHHHHHhhhccCCCCEEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 455566676764322 346777777777777553 344599998887643 4567777777777655
No 300
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=27.59 E-value=4.5e+02 Score=23.52 Aligned_cols=113 Identities=19% Similarity=0.211 Sum_probs=67.6
Q ss_pred CCHHHHHHHHHHHHHCCCCccccccCCCCCcHHHHHHHH-H----------------hc--CCCCCEEEEeccCcCCCCC
Q 024050 38 VSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKA-L----------------KQ--LPREKIQVATKFGIAGIGV 98 (273)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~se~~lg~~-l----------------~~--~~r~~~~i~tK~~~~~~~~ 98 (273)
.+.++...+.++|-+.|+.||=|...-. +-.++-+. + +. .....++|+|-.
T Consensus 73 l~~e~~~~L~~~~~~~Gi~~~stpfd~~---svd~l~~~~v~~~KIaS~~~~n~pLL~~~A~~gkPvilStGm------- 142 (329)
T TIGR03569 73 LSEEDHRELKEYCESKGIEFLSTPFDLE---SADFLEDLGVPRFKIPSGEITNAPLLKKIARFGKPVILSTGM------- 142 (329)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEEeCCHH---HHHHHHhcCCCEEEECcccccCHHHHHHHHhcCCcEEEECCC-------
Confidence 5788999999999999998886654322 22222221 0 00 123345555532
Q ss_pred ccccccCCHHHHHHHHHHHHHHcCCCcccEEEecCCCC-CCCHH-HHHHHHHHHHHcCCccEEecCCCCHHH
Q 024050 99 AGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDT-SVPIE-ETIGEMKKLVEEGKIKYIGLSEASPGT 168 (273)
Q Consensus 99 ~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~-~~~~~-~~~~~L~~l~~~G~ir~iGvS~~~~~~ 168 (273)
.+.+.|+++++...+ -|.+.-++.++|+... ..+.+ --+.++..|++.=. .-||+|.|+...
T Consensus 143 ------atl~Ei~~Av~~i~~-~G~~~~~i~llhC~s~YP~~~~~~nL~~I~~Lk~~f~-~pVG~SdHt~G~ 206 (329)
T TIGR03569 143 ------ATLEEIEAAVGVLRD-AGTPDSNITLLHCTTEYPAPFEDVNLNAMDTLKEAFD-LPVGYSDHTLGI 206 (329)
T ss_pred ------CCHHHHHHHHHHHHH-cCCCcCcEEEEEECCCCCCCcccCCHHHHHHHHHHhC-CCEEECCCCccH
Confidence 247888888888754 3432225899998754 23322 24566666665433 369999987653
No 301
>PF02801 Ketoacyl-synt_C: Beta-ketoacyl synthase, C-terminal domain; InterPro: IPR014031 Beta-ketoacyl-ACP synthase 2.3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the C-terminal domain of beta-ketoacyl-ACP synthases. The active site is contained in a cleft betweeen N- and C-terminal domains, with residues from both domains contributing to substrate binding and catalysis [].; PDB: 2UV8_B 3HMJ_A 2VKZ_C 4EWG_A 1TQY_H 1E5M_A 1J3N_B 2VZ8_A 2VZ9_B 3O04_A ....
Probab=27.55 E-value=1e+02 Score=22.67 Aligned_cols=52 Identities=10% Similarity=0.094 Sum_probs=34.0
Q ss_pred cCCHHHHHHHHHHHHHHcCCC--cccEEEecCCCCCCCHHHHHHHHHHHHHcCC
Q 024050 104 KGAPDYVRSCCEASLKRLDVD--YIDLYYQHRVDTSVPIEETIGEMKKLVEEGK 155 (273)
Q Consensus 104 ~~~~~~i~~~~~~sL~~L~~d--~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ 155 (273)
..+.+.+.+.+++.|++-+++ -||++..|.........--++++.++.....
T Consensus 21 ~p~~~~~~~~i~~al~~agi~~~~I~~i~~hg~Gt~~~D~~E~~ai~~~~~~~~ 74 (119)
T PF02801_consen 21 APNGAALARAIRRALADAGISPEDIDYIEAHGTGTPLGDAAEAEAIARVFGDSA 74 (119)
T ss_dssp STTHHHHHHHHHHHHHHHTS-GGGEEEEE----SSHHHHHHHHHHHHHHHGGGG
T ss_pred CcCHHHHHHHHHHHHhhhccccccceeeeeeccccccchhhhhhhhhhhhcccc
Confidence 346888999999999997765 8889999987654333445667777666544
No 302
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=27.54 E-value=4.6e+02 Score=23.61 Aligned_cols=119 Identities=13% Similarity=0.186 Sum_probs=74.3
Q ss_pred CCHHHHHHHHHHHHHCC---CCccccccCCCCCcHHHHHHHHHhcCCCCCEEEEeccCcCCCCCccccccCCHHHHHHHH
Q 024050 38 VSEEDGISMIKHAFSKG---ITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCC 114 (273)
Q Consensus 38 ~~~~~~~~~l~~A~~~G---in~~DtA~~Yg~g~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~ 114 (273)
++.++..+++....+.- +-.+|..+..+. -...+-+.+. ...-++|.+|.-.... ....+.+.+.+
T Consensus 48 ~~~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s--~~~~l~~~~~--~~piilV~NK~DLl~k-------~~~~~~~~~~l 116 (360)
T TIGR03597 48 LNDDDFLNLLNSLGDSNALIVYVVDIFDFEGS--LIPELKRFVG--GNPVLLVGNKIDLLPK-------SVNLSKIKEWM 116 (360)
T ss_pred CCHHHHHHHHhhcccCCcEEEEEEECcCCCCC--ccHHHHHHhC--CCCEEEEEEchhhCCC-------CCCHHHHHHHH
Confidence 56777888777766432 235676544431 1122233332 4556789999864321 12356667777
Q ss_pred HHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEecCCCCHHH
Q 024050 115 EASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGT 168 (273)
Q Consensus 115 ~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~ 168 (273)
++.++..+....|++.+-. -....+++.++.|.++.+.+.+--+|.+|..-..
T Consensus 117 ~~~~k~~g~~~~~i~~vSA-k~g~gv~eL~~~l~~~~~~~~v~~vG~~nvGKSt 169 (360)
T TIGR03597 117 KKRAKELGLKPVDIILVSA-KKGNGIDELLDKIKKARNKKDVYVVGVTNVGKSS 169 (360)
T ss_pred HHHHHHcCCCcCcEEEecC-CCCCCHHHHHHHHHHHhCCCeEEEECCCCCCHHH
Confidence 7777778765446666543 3346688999999888776788889999976543
No 303
>cd08568 GDPD_TmGDE_like Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermotoga maritime glycerophosphodiester phosphodiesterase (TmGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. TmGDE exists as a monomer that might be the biologically relevant form.
Probab=27.47 E-value=2.1e+02 Score=23.56 Aligned_cols=22 Identities=18% Similarity=0.199 Sum_probs=18.5
Q ss_pred CHHHHHHHHHHHHHCCCCcccc
Q 024050 39 SEEDGISMIKHAFSKGITFFDT 60 (273)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dt 60 (273)
-+|.....++.|++.|...|.+
T Consensus 12 ~pENTl~af~~A~~~Gad~iE~ 33 (226)
T cd08568 12 YPENTLEAFKKAIEYGADGVEL 33 (226)
T ss_pred CCcchHHHHHHHHHcCcCEEEE
Confidence 3588899999999999987763
No 304
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=27.39 E-value=2.7e+02 Score=22.55 Aligned_cols=109 Identities=16% Similarity=0.171 Sum_probs=50.4
Q ss_pred CcccCcceeccccCCCCCCCCCCHHHHHHHHHHHHHCCCCccccccCCCCCcHHHHHHHHHhc----CCCCCEEEEeccC
Q 024050 17 GLEVSKLGYGCMNLSGGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ----LPREKIQVATKFG 92 (273)
Q Consensus 17 g~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~se~~lg~~l~~----~~r~~~~i~tK~~ 92 (273)
|+++--|||++... =+.+..+.|..- ++-+-.+|...+...-.-++.+-.+++. .|.--|++++.+.
T Consensus 33 ~~~~iNLGfsG~~~--------le~~~a~~ia~~-~a~~~~ld~~~N~~~~~~~~~~~~fv~~iR~~hP~tPIllv~~~~ 103 (178)
T PF14606_consen 33 GLDVINLGFSGNGK--------LEPEVADLIAEI-DADLIVLDCGPNMSPEEFRERLDGFVKTIREAHPDTPILLVSPIP 103 (178)
T ss_dssp T-EEEEEE-TCCCS----------HHHHHHHHHS---SEEEEEESHHCCTTTHHHHHHHHHHHHHTT-SSS-EEEEE---
T ss_pred CCCeEeeeecCccc--------cCHHHHHHHhcC-CCCEEEEEeecCCCHHHHHHHHHHHHHHHHHhCCCCCEEEEecCC
Confidence 46666666654321 244555555433 5555566665554433333444445443 5677788888766
Q ss_pred cCCCCCccccccCCHHHHHHHHHHHHHHcC-CCcccEEEecCCC
Q 024050 93 IAGIGVAGVIVKGAPDYVRSCCEASLKRLD-VDYIDLYYQHRVD 135 (273)
Q Consensus 93 ~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~-~d~iDl~~lh~~~ 135 (273)
..... -........+...+.+++..+.|. -..-++++++..+
T Consensus 104 ~~~~~-~~~~~~~~~~~~~~~~r~~v~~l~~~g~~nl~~l~g~~ 146 (178)
T PF14606_consen 104 YPAGY-FDNSRGETVEEFREALREAVEQLRKEGDKNLYYLDGEE 146 (178)
T ss_dssp -TTTT-S--TTS--HHHHHHHHHHHHHHHHHTT-TTEEEE-HHH
T ss_pred ccccc-cCchHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCchh
Confidence 54421 111123346677788888888882 2356777777654
No 305
>COG1679 Predicted aconitase [General function prediction only]
Probab=27.30 E-value=4.9e+02 Score=23.85 Aligned_cols=105 Identities=14% Similarity=0.022 Sum_probs=60.9
Q ss_pred HHHHHHHHCCCCccccccCCCCCcHHHHHHHHHhcCCCCCEEEEeccCcCCC----CCccccccCCHHHHHHHHHHHHHH
Q 024050 45 SMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGI----GVAGVIVKGAPDYVRSCCEASLKR 120 (273)
Q Consensus 45 ~~l~~A~~~Gin~~DtA~~Yg~g~se~~lg~~l~~~~r~~~~i~tK~~~~~~----~~~~~~~~~~~~~i~~~~~~sL~~ 120 (273)
-++-.+...||.+|.-+.. ...++-+.+|.++....---++....+.+... .+.-.......+.+.++.++.-
T Consensus 208 y~~G~~~~d~IP~~~~~~~-p~~d~lKalgAA~atsgavam~HvegvTPE~~~~~~~d~~e~i~i~~~d~~da~~~l~-- 284 (403)
T COG1679 208 YLAGEAAGDGIPYFRLALF-PSEDELKALGAAMATSGAVAMYHVEGVTPEARALAFGDKAEKIEIEREDIDDAWERLN-- 284 (403)
T ss_pred HHHHHhccCCCCeeccCCC-CCHHHHHHHHHHHhhcCceeEEEecCCCcccccccccccCceeeeeHHHHHHHHHHhh--
Confidence 4566677789999984432 22356688999997544445666666665542 1111111233444444433322
Q ss_pred cCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcC
Q 024050 121 LDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEG 154 (273)
Q Consensus 121 L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G 154 (273)
.+-+.+|++.+-+|- .+++|....++.|+..+
T Consensus 285 ~~~~epdli~iGcPH--aS~~E~~~la~~l~~r~ 316 (403)
T COG1679 285 TADGEPDLIALGCPH--ASLEELRRLAELLKGRK 316 (403)
T ss_pred cCCCCCCEEEeCCCC--CCHHHHHHHHHHHhccC
Confidence 444588999998873 34566666666666665
No 306
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=27.20 E-value=5.5e+02 Score=24.42 Aligned_cols=101 Identities=11% Similarity=0.078 Sum_probs=56.5
Q ss_pred HHHHHHHHHhc----CCCCCEEEEeccCcCCCCCccccccCCHHHHHHHHHHHHHHcCCCcccEEEecCCCCCCCH-HHH
Q 024050 69 NEVLLGKALKQ----LPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPI-EET 143 (273)
Q Consensus 69 se~~lg~~l~~----~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~-~~~ 143 (273)
+++.+-+++++ .+.+-++|.+-+. ++-|-..++...+.++.+.++++.++.|...... ...
T Consensus 69 ~~~~L~~aI~~~~~~~~P~~I~V~sTC~--------------selIGdDi~~~~~~~~~~~~pvi~v~t~gf~g~~~~g~ 134 (511)
T TIGR01278 69 SQTRLVDTVRRVDDRFKPDLIVVTPSCT--------------SSLLQEDLGNLAAAAGLDKSKVIVADVNAYRRKENQAA 134 (511)
T ss_pred hHHHHHHHHHHHHHhcCCCEEEEeCCCh--------------HHHhccCHHHHHHHhccCCCcEEEecCCCcccchhHHH
Confidence 56667777765 3344455666442 3334444444455555446889999988765432 122
Q ss_pred HHHHHHHH--------------HcCCccEEecCCC------CHHHHHHHhhcCCceEEee
Q 024050 144 IGEMKKLV--------------EEGKIKYIGLSEA------SPGTIRRAHAVHPITAVQM 183 (273)
Q Consensus 144 ~~~L~~l~--------------~~G~ir~iGvS~~------~~~~l~~~~~~~~~~~~q~ 183 (273)
-.+|+.++ +.+.|.=||.++. +.+.|+++++...+.++.+
T Consensus 135 ~~al~~lv~~~~~~~~~~~~~~~~~~VNIiG~~~l~~~~~~D~~elkrlL~~lGi~vn~v 194 (511)
T TIGR01278 135 DRTLTQLVRRFAKEQPKPGRTTEKPSVNLLGPASLGFHHRHDLIELRRLLKTLGIEVNVV 194 (511)
T ss_pred HHHHHHHHHHHHhccccccccCCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHCCCeEEEE
Confidence 22333222 2456888898762 3456777777755555443
No 307
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=27.19 E-value=3.5e+02 Score=24.73 Aligned_cols=53 Identities=9% Similarity=0.041 Sum_probs=34.1
Q ss_pred CCHHHHHHHhhc-CCceEEeeeccccccccc-ccHHHHHHHhCCeEEecccCCCc
Q 024050 164 ASPGTIRRAHAV-HPITAVQMEWSLWTRDIE-EEIIPLCRELGIGIVPYSPLGRG 216 (273)
Q Consensus 164 ~~~~~l~~~~~~-~~~~~~q~~~~l~~~~~~-~~l~~~~~~~gi~v~a~spl~~G 216 (273)
.+++.+++++.. .+..++..+.|+.-.-.. .++.+.|+++|+.++.=..++.+
T Consensus 143 ~d~~~l~~ai~~~tklV~~esp~Nptg~v~dl~~I~~la~~~g~~vivD~a~a~~ 197 (403)
T PRK07810 143 EDLSQWEEALSVPTQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDNVFATP 197 (403)
T ss_pred CCHHHHHHhcCcCceEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCCcc
Confidence 466777776643 456666667776654332 67888888888888854444433
No 308
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=27.16 E-value=4.6e+02 Score=23.46 Aligned_cols=27 Identities=11% Similarity=0.150 Sum_probs=17.4
Q ss_pred CCCHHHHHHHHH-------HHHHCCCCccccccC
Q 024050 37 PVSEEDGISMIK-------HAFSKGITFFDTADV 63 (273)
Q Consensus 37 ~~~~~~~~~~l~-------~A~~~Gin~~DtA~~ 63 (273)
.++.+|..++++ .|.++|+..++.-..
T Consensus 131 ~mt~eeI~~ii~~f~~aA~~a~~aGfDgVeih~a 164 (337)
T PRK13523 131 EMTKEQIKETVLAFKQAAVRAKEAGFDVIEIHGA 164 (337)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccc
Confidence 356676666654 556789888775433
No 309
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=27.14 E-value=4e+02 Score=22.75 Aligned_cols=97 Identities=15% Similarity=0.181 Sum_probs=58.4
Q ss_pred cCCHHHHHHHHHHHHHHcCCCcccEEEec-CCCCCCCHHHHHHHHHHHHHc-CCccEEecCCCCHHHHHHHhhcC---Cc
Q 024050 104 KGAPDYVRSCCEASLKRLDVDYIDLYYQH-RVDTSVPIEETIGEMKKLVEE-GKIKYIGLSEASPGTIRRAHAVH---PI 178 (273)
Q Consensus 104 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lh-~~~~~~~~~~~~~~L~~l~~~-G~ir~iGvS~~~~~~l~~~~~~~---~~ 178 (273)
.++.+... .+-+.|.++|+++|++-..- +++ -++.++.+.+. ..++..+++......++.+.+.. ++
T Consensus 16 ~~~~~~k~-~i~~~L~~~Gv~~iEvg~~~~~~~-------~~~~~~~l~~~~~~~~~~~l~r~~~~~v~~a~~~~~~~~~ 87 (268)
T cd07940 16 SLTPEEKL-EIARQLDELGVDVIEAGFPAASPG-------DFEAVKRIAREVLNAEICGLARAVKKDIDAAAEALKPAKV 87 (268)
T ss_pred CCCHHHHH-HHHHHHHHcCCCEEEEeCCCCCHH-------HHHHHHHHHHhCCCCEEEEEccCCHhhHHHHHHhCCCCCC
Confidence 34455444 45555999999999986432 221 24555666553 34777788766667777776653 25
Q ss_pred eEEeeecccccc--------c----c--cccHHHHHHHhCCeEE
Q 024050 179 TAVQMEWSLWTR--------D----I--EEEIIPLCRELGIGIV 208 (273)
Q Consensus 179 ~~~q~~~~l~~~--------~----~--~~~l~~~~~~~gi~v~ 208 (273)
+.+.+.+++-+. . . -.+.+++++++|+.|.
T Consensus 88 ~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~ 131 (268)
T cd07940 88 DRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVE 131 (268)
T ss_pred CEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 555554433111 0 0 1468889999998766
No 310
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=27.11 E-value=1.4e+02 Score=27.91 Aligned_cols=58 Identities=17% Similarity=0.252 Sum_probs=39.1
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEecCCCCHHHHHH
Q 024050 106 APDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRR 171 (273)
Q Consensus 106 ~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~ 171 (273)
+.+...+.+.+.|+.||+++ |-+ .......+..-+.+++|+++|++ |...| +.+.+++
T Consensus 49 s~~~~~~~I~e~L~wLGI~~-De~----y~QSer~~~y~~~~e~L~e~G~A-Y~C~C--t~eel~~ 106 (445)
T PRK12558 49 SKQEYADAIAEDLKWLGINW-DRT----FRQSDRFDRYDEAAEKLKAAGRL-YPCYE--TPEELEL 106 (445)
T ss_pred chHHHHHHHHHHHHHcCCCC-Ccc----ccHHHHHHHHHHHHHHHHHCCCE-EEecC--chHHHHH
Confidence 46778999999999999873 632 22223345567888999999995 44443 4455543
No 311
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=27.10 E-value=3.8e+02 Score=24.29 Aligned_cols=50 Identities=6% Similarity=0.032 Sum_probs=25.8
Q ss_pred CHHHHHHHhhc-CCceEEeeecccccccc-cccHHHHHHHhCCeEEecccCC
Q 024050 165 SPGTIRRAHAV-HPITAVQMEWSLWTRDI-EEEIIPLCRELGIGIVPYSPLG 214 (273)
Q Consensus 165 ~~~~l~~~~~~-~~~~~~q~~~~l~~~~~-~~~l~~~~~~~gi~v~a~spl~ 214 (273)
+++.++++++. .+..++..+-|+.-... ..++.+.|+++|+.++.=..++
T Consensus 123 d~e~l~~ai~~~t~lV~lesP~Nptg~~~di~~I~~la~~~gi~vivD~t~a 174 (380)
T PRK06176 123 DLSQIKKAIKPNTKALYLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFA 174 (380)
T ss_pred CHHHHHHhcCcCceEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEECCcc
Confidence 45555555432 33444444555433221 1567777777777776544444
No 312
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=27.10 E-value=4.2e+02 Score=23.09 Aligned_cols=99 Identities=16% Similarity=0.144 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEecCCC-CHHHHHHHhhcCCceEEeeec
Q 024050 107 PDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEA-SPGTIRRAHAVHPITAVQMEW 185 (273)
Q Consensus 107 ~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~-~~~~l~~~~~~~~~~~~q~~~ 185 (273)
++.+++.++...+. +-+.+.-+-+...+...+.++....++..++.|+--.+=++.. +++.+..+++...+..+-.-+
T Consensus 140 ~~~~~~~~~~~~~~-~~~~vvg~~l~~~~~~~~~~~~~~~~~~A~~~g~~v~~H~~E~~~~~~~~~a~~~~g~~~i~H~~ 218 (325)
T cd01320 140 PESAQETLELALKY-RDKGVVGFDLAGDEVGFPPEKFVRAFQRAREAGLRLTAHAGEAGGPESVRDALDLLGAERIGHGI 218 (325)
T ss_pred HHHHHHHHHHHHhc-cCCCEEEeecCCCCCCCCHHHHHHHHHHHHHCCCceEEeCCCCCCHHHHHHHHHHcCCcccchhh
Confidence 45566666655443 2232333333333333345666677777888777555544432 334444445422222111111
Q ss_pred ccccccccccHHHHHHHhCCeEEe
Q 024050 186 SLWTRDIEEEIIPLCRELGIGIVP 209 (273)
Q Consensus 186 ~l~~~~~~~~l~~~~~~~gi~v~a 209 (273)
++ .. ..+.++..++.||.|..
T Consensus 219 ~l-~~--~~~~~~~l~~~gi~v~~ 239 (325)
T cd01320 219 RA-IE--DPELVKRLAERNIPLEV 239 (325)
T ss_pred cc-Cc--cHHHHHHHHHcCCeEEE
Confidence 11 11 14578888899988753
No 313
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=27.05 E-value=2.5e+02 Score=26.30 Aligned_cols=66 Identities=17% Similarity=0.158 Sum_probs=44.7
Q ss_pred HHHHHHHcCCccEEecCCCCHHHHHHHhhc-------CC-ceEEeeecccccccccccHHHHHHHhCCeEEeccc
Q 024050 146 EMKKLVEEGKIKYIGLSEASPGTIRRAHAV-------HP-ITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSP 212 (273)
Q Consensus 146 ~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~-------~~-~~~~q~~~~l~~~~~~~~l~~~~~~~gi~v~a~sp 212 (273)
-...+-+.|-...+|....+++.+++.+.. .+ +-+|-+ .+.-+...+.++++.|.++++.++..+-
T Consensus 35 LVaAVs~AGgLG~lgag~l~~e~l~~~I~~ir~~~~~~p~fGVNL~-~~~~~~~~e~~~v~l~l~~~V~~veasa 108 (444)
T TIGR02814 35 LVIAMGRAGILGFFGAGGLPLEEVEQAIHRIQQALPGGPAYGVNLI-HSPSDPALEWGLVDLLLRHGVRIVEASA 108 (444)
T ss_pred HHHHHHhCCceeeeCCCCCCHHHHHHHHHHHHHhcCCCCceEEEec-ccCCCcccHHHHHHHHHHcCCCEEEecc
Confidence 345667899999999999999988876544 13 444332 2222222235789999999999887653
No 314
>COG2055 Malate/L-lactate dehydrogenases [Energy production and conversion]
Probab=26.95 E-value=4.8e+02 Score=23.62 Aligned_cols=87 Identities=18% Similarity=0.179 Sum_probs=48.3
Q ss_pred cCCHHHHHHHHHHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHH-HHHcCCccEEecCCCCHHHHHHHhhc-------
Q 024050 104 KGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKK-LVEEGKIKYIGLSEASPGTIRRAHAV------- 175 (273)
Q Consensus 104 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~-l~~~G~ir~iGvS~~~~~~l~~~~~~------- 175 (273)
..+.+.+++-+.+.|.+.|++ ++..++..+ |+..-. -|+.+|....+...++.
T Consensus 5 ~~~~e~L~~~~~~vl~~~G~~----------------ee~A~~vA~~lv~ad~---~G~~SHGv~r~p~yi~~l~~G~i~ 65 (349)
T COG2055 5 KVSAEELKALIEEVLRKAGVP----------------EEDARAVADVLVAADL---RGVDSHGVGRLPGYVRRLKAGKIN 65 (349)
T ss_pred EecHHHHHHHHHHHHHHcCCC----------------HHHHHHHHHHHHHHHh---cCCcccchHHHHHHHHHHHcCCcC
Confidence 356899999999999999962 222222222 222222 46677776655554432
Q ss_pred --CCceEEeeecc--cccc----------cccccHHHHHHHhCCeEEe
Q 024050 176 --HPITAVQMEWS--LWTR----------DIEEEIIPLCRELGIGIVP 209 (273)
Q Consensus 176 --~~~~~~q~~~~--l~~~----------~~~~~l~~~~~~~gi~v~a 209 (273)
..+.+++--=+ .+|- ..-...++.|+++||++++
T Consensus 66 ~~a~~~i~~~~~a~~~iDa~~g~G~~a~~~am~~aie~Ak~~Gia~va 113 (349)
T COG2055 66 PDAEPEIVREAPAVAVLDADGGFGQVAAKKAMELAIEKAKQHGIAAVA 113 (349)
T ss_pred CCCceEEEeecCcEEEEeCCCCcchHHHHHHHHHHHHHHHHhCeeEEE
Confidence 12222221111 1111 1126689999999998874
No 315
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=26.92 E-value=5.4e+02 Score=25.60 Aligned_cols=101 Identities=13% Similarity=0.143 Sum_probs=65.7
Q ss_pred CCCHHHHHHHHHHHHHCCCCcccccc--CCCCCcHHHHHHHHHhcCCCCCEEEEe--ccCcCCCCC--cc-ccc----cC
Q 024050 37 PVSEEDGISMIKHAFSKGITFFDTAD--VYGQNANEVLLGKALKQLPREKIQVAT--KFGIAGIGV--AG-VIV----KG 105 (273)
Q Consensus 37 ~~~~~~~~~~l~~A~~~Gin~~DtA~--~Yg~g~se~~lg~~l~~~~r~~~~i~t--K~~~~~~~~--~~-~~~----~~ 105 (273)
++|.++..+.++...+.|+.-|=.+. .|-+...|..+++.+++.- .++-|++ ++++..... .. ... ..
T Consensus 135 ~lD~~~v~~~~~~l~~~gv~siAVs~~~S~~NP~HE~~v~eiire~~-~~i~V~~shev~p~~~~~eR~~TavlnA~L~p 213 (674)
T COG0145 135 PLDEEEVREAAAALKAAGVEAIAVSSLFSYRNPEHELRVAEIIREIG-PDIPVSLSHEVSPEIGEYERANTAVLNAYLSP 213 (674)
T ss_pred cCCHHHHHHHHHHHHhCCCcEEEEEEecccCCcHHHHHHHHHHHHhc-CCceEEechhcchhcCcccchhhheeeeeehH
Confidence 47899999999999999998666554 4446689999999999744 5666666 777643211 00 000 00
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEecCCCCCCC
Q 024050 106 APDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVP 139 (273)
Q Consensus 106 ~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~ 139 (273)
--....++++..|+.-|.+ ..++++.+.....+
T Consensus 214 i~~~yl~~v~~~l~~~g~~-~~l~~m~sdGgl~~ 246 (674)
T COG0145 214 ILRRYLEAVKDALKERGIK-ARLMVMQSDGGLVS 246 (674)
T ss_pred HHHHHHHHHHHHHHhcCCC-ceeEEEecCCcccc
Confidence 1234556677777777754 67777777654433
No 316
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=26.78 E-value=1.6e+02 Score=25.22 Aligned_cols=67 Identities=13% Similarity=-0.002 Sum_probs=44.9
Q ss_pred HHHHHHcCCccEEec--CCCCHHHHHHHhhc-CCceEEeeecccccccccccHHHHHHHhCCeEEecccCC
Q 024050 147 MKKLVEEGKIKYIGL--SEASPGTIRRAHAV-HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLG 214 (273)
Q Consensus 147 L~~l~~~G~ir~iGv--S~~~~~~l~~~~~~-~~~~~~q~~~~l~~~~~~~~l~~~~~~~gi~v~a~spl~ 214 (273)
|.+-.++|+. -+|+ ..-++...+-+... .++.++-.+++.++......++..|+..|+..+++-|-.
T Consensus 10 lk~~l~~g~~-~~g~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~~ 79 (256)
T PRK10558 10 FKAALAAKQV-QIGCWSALANPITTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPTN 79 (256)
T ss_pred HHHHHHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCCC
Confidence 4444555764 3554 33444444443333 567788889999988755788999999999999887653
No 317
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=26.74 E-value=4.2e+02 Score=22.87 Aligned_cols=25 Identities=20% Similarity=0.385 Sum_probs=22.3
Q ss_pred CCHHHHHHHHHHHHHCCCCcccccc
Q 024050 38 VSEEDGISMIKHAFSKGITFFDTAD 62 (273)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gin~~DtA~ 62 (273)
.+.++..++++.-.+.||+.|+...
T Consensus 17 ~s~e~K~~i~~~L~~~Gv~~IEvGs 41 (274)
T cd07938 17 IPTEDKIELIDALSAAGLRRIEVTS 41 (274)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeCC
Confidence 4789999999999999999999974
No 318
>PRK10551 phage resistance protein; Provisional
Probab=26.73 E-value=3.4e+02 Score=25.87 Aligned_cols=100 Identities=13% Similarity=0.190 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHcCCCcccEEEecCCCCC-CCHHHHHHHHHHHHHcCCccEEecCCCCH--HHHHHHhhcCCceEEee
Q 024050 107 PDYVRSCCEASLKRLDVDYIDLYYQHRVDTS-VPIEETIGEMKKLVEEGKIKYIGLSEASP--GTIRRAHAVHPITAVQM 183 (273)
Q Consensus 107 ~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~-~~~~~~~~~L~~l~~~G~ir~iGvS~~~~--~~l~~~~~~~~~~~~q~ 183 (273)
...+.+.+.+.++.++.+..-+ .+.-.+.. ....+..+.++.|++.|- .|.+.+|.. ..+.. +...+++.+-+
T Consensus 363 ~~~f~~~l~~~l~~~~~~~~~L-vlEItE~~~~~~~~~~~~l~~Lr~~G~--~ialDDFGtg~ssl~~-L~~l~vD~lKI 438 (518)
T PRK10551 363 SDSFKADVQRLLASLPADHFQI-VLEITERDMVQEEEATKLFAWLHSQGI--EIAIDDFGTGHSALIY-LERFTLDYLKI 438 (518)
T ss_pred CchHHHHHHHHHHhCCCCcceE-EEEEechHhcCCHHHHHHHHHHHHCCC--EEEEECCCCCchhHHH-HHhCCCCEEEE
Confidence 3456778888888888654332 22222211 122446688899999998 566666542 22332 23335666666
Q ss_pred ecccccc---c-----ccccHHHHHHHhCCeEEec
Q 024050 184 EWSLWTR---D-----IEEEIIPLCRELGIGIVPY 210 (273)
Q Consensus 184 ~~~l~~~---~-----~~~~l~~~~~~~gi~v~a~ 210 (273)
.-+.... + .-..+++.|++.|+.++|-
T Consensus 439 D~~fv~~i~~~~~~~~il~~ii~la~~lgi~vVAE 473 (518)
T PRK10551 439 DRGFIQAIGTETVTSPVLDAVLTLAKRLNMLTVAE 473 (518)
T ss_pred CHHHHhhhccChHHHHHHHHHHHHHHHCCCEEEEE
Confidence 5444332 1 1256999999999999984
No 319
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=26.73 E-value=2.6e+02 Score=23.59 Aligned_cols=106 Identities=21% Similarity=0.177 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHHHHCCCCccccccCCCCCcHHHHHHHHHhcCCCCCEEEE----------eccCcCCCCCcc------cc
Q 024050 39 SEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVA----------TKFGIAGIGVAG------VI 102 (273)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~se~~lg~~l~~~~r~~~~i~----------tK~~~~~~~~~~------~~ 102 (273)
+.+...+++++|-..|.+|+|.|..- +++. ..+....=-+.++ .|-|...-+-++ ..
T Consensus 25 d~~~V~~i~~AA~~ggAt~vDIAadp------~LV~-~~~~~s~lPICVSaVep~~f~~aV~AGAdliEIGNfDsFY~qG 97 (242)
T PF04481_consen 25 DAESVAAIVKAAEIGGATFVDIAADP------ELVK-LAKSLSNLPICVSAVEPELFVAAVKAGADLIEIGNFDSFYAQG 97 (242)
T ss_pred CHHHHHHHHHHHHccCCceEEecCCH------HHHH-HHHHhCCCCeEeecCCHHHHHHHHHhCCCEEEecchHHHHhcC
Confidence 78999999999999999999999643 2333 2222111122222 221111100011 12
Q ss_pred ccCCHHHHHHHHHHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCC
Q 024050 103 VKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGK 155 (273)
Q Consensus 103 ~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ 155 (273)
..++.+.|.+-.++..+.|=--.+-+-. .+..+++++.+--.+|++.|-
T Consensus 98 r~f~a~eVL~Lt~~tR~LLP~~~LsVTV----PHiL~ld~Qv~LA~~L~~~Ga 146 (242)
T PF04481_consen 98 RRFSAEEVLALTRETRSLLPDITLSVTV----PHILPLDQQVQLAEDLVKAGA 146 (242)
T ss_pred CeecHHHHHHHHHHHHHhCCCCceEEec----CccccHHHHHHHHHHHHHhCC
Confidence 3457788888888888877422222222 233566777777777777664
No 320
>PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=26.73 E-value=4.7e+02 Score=23.47 Aligned_cols=90 Identities=11% Similarity=0.113 Sum_probs=0.0
Q ss_pred EEEecCCCC-----------CCCHHHHHHHHHHHHHcC----CccEEecC--CCCHHHHHHHhhc---CCceEEeeeccc
Q 024050 128 LYYQHRVDT-----------SVPIEETIGEMKKLVEEG----KIKYIGLS--EASPGTIRRAHAV---HPITAVQMEWSL 187 (273)
Q Consensus 128 l~~lh~~~~-----------~~~~~~~~~~L~~l~~~G----~ir~iGvS--~~~~~~l~~~~~~---~~~~~~q~~~~l 187 (273)
.+.||.+++ ..+++++++++.+..++. +|+++=+. |.+.++++++.+. ....++-++||.
T Consensus 206 aiSL~a~d~e~r~~i~p~~~~~~l~~ll~~l~~~~~~~~~~V~ieyvLI~GvNDs~e~~~~L~~ll~~~~~~VnLIPynp 285 (343)
T PRK14468 206 ALSLHAPDEETRQRIIPTAHRYSIAEIMAAVRHYQAVTGRRVTLEYTMLKGVNDHLWQAELLADLLRGLVSHVNLIPFNP 285 (343)
T ss_pred EEEcCCCCHHHHHHhccccccCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCcCCHHHHHHHHHHHhcCCcEEEEEcCCC
Q ss_pred cc------cccc--ccHHHHHHHhCCeEEecccCCCcc
Q 024050 188 WT------RDIE--EEIIPLCRELGIGIVPYSPLGRGF 217 (273)
Q Consensus 188 ~~------~~~~--~~l~~~~~~~gi~v~a~spl~~G~ 217 (273)
.. +..+ ....+..+++|+.+..+.+.+.-+
T Consensus 286 ~~~~~~~~ps~e~i~~f~~~L~~~Gi~vtiR~~~g~di 323 (343)
T PRK14468 286 WEGSPFQSSPRAQILAFADVLERRGVPVSVRWSRGRDV 323 (343)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCcch
No 321
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=26.66 E-value=4.5e+02 Score=23.27 Aligned_cols=133 Identities=12% Similarity=0.074 Sum_probs=74.4
Q ss_pred CHHHHHHHHHHHHHCCCCccc----------cccCCCCC--cHHHHHHHHHhcC-CCCCEEEEeccCcCCCCCccccccC
Q 024050 39 SEEDGISMIKHAFSKGITFFD----------TADVYGQN--ANEVLLGKALKQL-PREKIQVATKFGIAGIGVAGVIVKG 105 (273)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~D----------tA~~Yg~g--~se~~lg~~l~~~-~r~~~~i~tK~~~~~~~~~~~~~~~ 105 (273)
+.++..++.+.+.+.|+..|| +...||.. ..-+.+.+.++.. ..-++-|+.|+...... ..
T Consensus 65 ~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~------~~ 138 (318)
T TIGR00742 65 DPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIGIDP------LD 138 (318)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecCCCC------cc
Confidence 678888888888889999998 44455522 1223444444431 11244588887543210 01
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEecCCCC-CCC---------HHHHHHHHHHHHHcC-CccEEecCC-CCHHHHHHHh
Q 024050 106 APDYVRSCCEASLKRLDVDYIDLYYQHRVDT-SVP---------IEETIGEMKKLVEEG-KIKYIGLSE-ASPGTIRRAH 173 (273)
Q Consensus 106 ~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~-~~~---------~~~~~~~L~~l~~~G-~ir~iGvS~-~~~~~l~~~~ 173 (273)
+.+.. ..+-+.++..| +|.+.+|.-.. ... ..--|+...++++.- .|--||.-+ ++.+.+.+.+
T Consensus 139 ~~~~~-~~~~~~l~~~G---~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l 214 (318)
T TIGR00742 139 SYEFL-CDFVEIVSGKG---CQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHL 214 (318)
T ss_pred hHHHH-HHHHHHHHHcC---CCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEEECCcCCHHHHHHHH
Confidence 11222 23344555666 78889997642 000 012467777787765 677777665 5666666665
Q ss_pred hcCCceEEee
Q 024050 174 AVHPITAVQM 183 (273)
Q Consensus 174 ~~~~~~~~q~ 183 (273)
. ..+.+++
T Consensus 215 ~--g~dgVMi 222 (318)
T TIGR00742 215 S--HVDGVMV 222 (318)
T ss_pred h--CCCEEEE
Confidence 4 2444444
No 322
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=26.63 E-value=2.3e+02 Score=23.01 Aligned_cols=64 Identities=14% Similarity=0.150 Sum_probs=40.7
Q ss_pred HcCCCcccEEEecCCCCCCCH-HHHHHHHHHHHHcCCccEEecC-CCCHHHHHHHhhcCCceEEeeecc
Q 024050 120 RLDVDYIDLYYQHRVDTSVPI-EETIGEMKKLVEEGKIKYIGLS-EASPGTIRRAHAVHPITAVQMEWS 186 (273)
Q Consensus 120 ~L~~d~iDl~~lh~~~~~~~~-~~~~~~L~~l~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~q~~~~ 186 (273)
++|+|++-+..-. .....+ .+....|.++... .+..+||- |.+++.+.++.....++.+|++-+
T Consensus 17 ~~Gvd~ig~i~~~--~s~R~v~~~~a~~l~~~~~~-~~~~V~v~vn~~~~~i~~ia~~~~~d~Vqlhg~ 82 (203)
T cd00405 17 EAGADAIGFIFAP--KSPRYVSPEQAREIVAALPP-FVKRVGVFVNEDLEEILEIAEELGLDVVQLHGD 82 (203)
T ss_pred HcCCCEEEEecCC--CCCCCCCHHHHHHHHHhCCC-CCcEEEEEeCCCHHHHHHHHHhcCCCEEEECCC
Confidence 5786666654322 222223 4555555555543 36778884 777888888888788899998654
No 323
>COG2949 SanA Uncharacterized membrane protein [Function unknown]
Probab=26.30 E-value=3.9e+02 Score=22.38 Aligned_cols=95 Identities=18% Similarity=0.337 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCC------ccEEecCCCCHHHHHHHhhc---CCce
Q 024050 109 YVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGK------IKYIGLSEASPGTIRRAHAV---HPIT 179 (273)
Q Consensus 109 ~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~------ir~iGvS~~~~~~l~~~~~~---~~~~ 179 (273)
.....++..-+-..-..++.+++-..+......|.+.-.++|.+.|. ..|-|+++. +.+-++.+. ..+.
T Consensus 77 yy~~Ri~aA~~ly~~gKV~~LLlSGDN~~~sYnEp~tM~kdL~~~GVp~~~i~lDyAGFrTL--DSvvRA~kVF~~~~ft 154 (235)
T COG2949 77 YYTYRIDAAIALYKAGKVNYLLLSGDNATVSYNEPRTMRKDLIAAGVPAKNIFLDYAGFRTL--DSVVRARKVFGTNDFT 154 (235)
T ss_pred hHHHHHHHHHHHHhcCCeeEEEEecCCCcccccchHHHHHHHHHcCCCHHHeeecccCccHH--HHHHHHHHHcCcCcEE
Confidence 45566666666777778999999988877788888888899999987 345566654 334444443 4555
Q ss_pred EEeeecccccccccccHHHHHHHhCCeEEecc
Q 024050 180 AVQMEWSLWTRDIEEEIIPLCRELGIGIVPYS 211 (273)
Q Consensus 180 ~~q~~~~l~~~~~~~~l~~~~~~~gi~v~a~s 211 (273)
++--.||. +..+=.|+.+||.-+++.
T Consensus 155 IItQ~FHc------eRAlfiA~~~gIdAic~~ 180 (235)
T COG2949 155 IITQRFHC------ERALFIARQMGIDAICFA 180 (235)
T ss_pred EEeccccc------HHHHHHHHHhCCceEEec
Confidence 54444443 556778999999988764
No 324
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=26.29 E-value=2.9e+02 Score=26.61 Aligned_cols=74 Identities=22% Similarity=0.125 Sum_probs=51.1
Q ss_pred CCHHHHHHHHHHHHHcCCccEEecCCCCHHHHHHHhhcCCc---eEEeeecccccccccccHHHHHHHhCCeEEecccCC
Q 024050 138 VPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHPI---TAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLG 214 (273)
Q Consensus 138 ~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~---~~~q~~~~l~~~~~~~~l~~~~~~~gi~v~a~spl~ 214 (273)
.+..++++++-+.++..+|+.||+-.+....+..+++...+ .+-|.-+++-+. -.-++..-..|.-+..-.|+.
T Consensus 410 id~~~I~ew~~~~~~~~~i~~v~~D~~g~~~~~~~l~~~g~~lv~i~Q~~~~l~~~---~k~~e~~~~~g~i~~~dnp~m 486 (546)
T COG4626 410 IDYAEIVEWFMEIREKFLIKLVGFDPSGAGEFRDALAEAGIKVVGIPQGFKKLSGA---IKTIERKLAEGVLVHGDNPLM 486 (546)
T ss_pred cCHHHHHHHHHHHHHhCCccEEeecccchHHHHHHHHhCCCceeeccchhhhhCch---hHHHHHHHhcCcEEECCCcHH
Confidence 44678999999999999999999999999888887776443 333443334332 334555556666666666664
No 325
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=26.27 E-value=4.6e+02 Score=23.22 Aligned_cols=75 Identities=16% Similarity=0.117 Sum_probs=45.3
Q ss_pred HHHHHHHHHHcCCccEEecCC----CCHHH----HHHHhhcCCceEE-eeecccccc--cccccHHHHHHHhCCeEEecc
Q 024050 143 TIGEMKKLVEEGKIKYIGLSE----ASPGT----IRRAHAVHPITAV-QMEWSLWTR--DIEEEIIPLCRELGIGIVPYS 211 (273)
Q Consensus 143 ~~~~L~~l~~~G~ir~iGvS~----~~~~~----l~~~~~~~~~~~~-q~~~~l~~~--~~~~~l~~~~~~~gi~v~a~s 211 (273)
..+.++.+..-..++.+|+.. ..+.. +.+.++...+..+ ++++|-... +...+.++.+++.|+.+...+
T Consensus 161 L~~ll~~l~~i~~~~~iri~tr~~~~~p~rit~el~~~L~~~~~~~~~~~h~dh~~Ei~d~~~~ai~~L~~~Gi~v~~qt 240 (321)
T TIGR03821 161 LDWLLNLLEQIPHLKRLRIHTRLPVVIPDRITSGLCDLLANSRLQTVLVVHINHANEIDAEVADALAKLRNAGITLLNQS 240 (321)
T ss_pred HHHHHHHHHhCCCCcEEEEecCcceeeHHHhhHHHHHHHHhcCCcEEEEeeCCChHhCcHHHHHHHHHHHHcCCEEEecc
Confidence 456666777777888888764 32222 2223333333333 445553211 112667888899999999999
Q ss_pred cCCCcc
Q 024050 212 PLGRGF 217 (273)
Q Consensus 212 pl~~G~ 217 (273)
++..|+
T Consensus 241 vllkgi 246 (321)
T TIGR03821 241 VLLRGV 246 (321)
T ss_pred eeeCCC
Confidence 998875
No 326
>PRK06256 biotin synthase; Validated
Probab=26.20 E-value=4.6e+02 Score=23.13 Aligned_cols=136 Identities=20% Similarity=0.196 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHCCC-CccccccCCCCCcHH-HHHHHHHhc-CCCCCEEEEeccCcCCCCCccccccCCHHHHHHHH
Q 024050 38 VSEEDGISMIKHAFSKGI-TFFDTADVYGQNANE-VLLGKALKQ-LPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCC 114 (273)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gi-n~~DtA~~Yg~g~se-~~lg~~l~~-~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~ 114 (273)
.+.++..+.++.+.+.|+ .++-.+..+++...+ +.+-+.++. ..+-.+-+.+-.+... +..
T Consensus 91 ~s~eeI~~~~~~~~~~g~~~~~l~~~g~~p~~~~~~~~~e~i~~i~~~~~i~~~~~~g~l~----------------~e~ 154 (336)
T PRK06256 91 LDIEELIEAAKEAIEEGAGTFCIVASGRGPSGKEVDQVVEAVKAIKEETDLEICACLGLLT----------------EEQ 154 (336)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEecCCCCCchHHHHHHHHHHHHHhcCCCcEEecCCcCC----------------HHH
Q ss_pred HHHHHHcCCCcccEE------EecCCCCCCCHHHHHHHHHHHHHcCCccE----EecCCCCHHHHHHHhhc-CCceEEee
Q 024050 115 EASLKRLDVDYIDLY------YQHRVDTSVPIEETIGEMKKLVEEGKIKY----IGLSEASPGTIRRAHAV-HPITAVQM 183 (273)
Q Consensus 115 ~~sL~~L~~d~iDl~------~lh~~~~~~~~~~~~~~L~~l~~~G~ir~----iGvS~~~~~~l~~~~~~-~~~~~~q~ 183 (273)
-+-|++.|++.+-+- .+.........++.+++++.+++.|.--. +|+ +.+.+.+.+.+.. ....+..+
T Consensus 155 l~~LkeaG~~~v~~~lEts~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~~I~Gl-gEt~ed~~~~~~~l~~l~~~~v 233 (336)
T PRK06256 155 AERLKEAGVDRYNHNLETSRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSGGIIGM-GESLEDRVEHAFFLKELDADSI 233 (336)
T ss_pred HHHHHHhCCCEEecCCccCHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccCeEEeC-CCCHHHHHHHHHHHHhCCCCEE
Q ss_pred ecccccc
Q 024050 184 EWSLWTR 190 (273)
Q Consensus 184 ~~~l~~~ 190 (273)
+++.+.+
T Consensus 234 ~i~~l~P 240 (336)
T PRK06256 234 PINFLNP 240 (336)
T ss_pred eeccccc
No 327
>TIGR01660 narH nitrate reductase, beta subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.
Probab=26.17 E-value=28 Score=32.54 Aligned_cols=52 Identities=19% Similarity=0.356 Sum_probs=28.2
Q ss_pred CCccEEecCCCCHHHHHHHhhcCC-ceEEeeecccccccccccHHHHHHHhCC
Q 024050 154 GKIKYIGLSEASPGTIRRAHAVHP-ITAVQMEWSLWTRDIEEEIIPLCRELGI 205 (273)
Q Consensus 154 G~ir~iGvS~~~~~~l~~~~~~~~-~~~~q~~~~l~~~~~~~~l~~~~~~~gi 205 (273)
+.+|++|+..++.+.+.++..... -+..+.+..++-.....++++.|++.||
T Consensus 264 ~~Ar~fG~ll~d~d~i~eaa~~~~~~~~y~~~~~~~ldp~dp~v~~~A~~~gi 316 (492)
T TIGR01660 264 GRIRYLGVLLYDADKIEEAASTENEKDLYHRQLDVFLDPNDPEVIAQAKKDGI 316 (492)
T ss_pred hhhhhhhhhccCcHHHHHHHhcccchhHHHHhhceecCCCCHHHHHHHHHcCC
Confidence 467889999888888877766521 2223333333322112345555555443
No 328
>PLN02389 biotin synthase
Probab=26.12 E-value=5.1e+02 Score=23.65 Aligned_cols=101 Identities=17% Similarity=0.151 Sum_probs=56.1
Q ss_pred CCHHHHHHHHHHHHHCCCCccccccC-CC-CC--cHHHHHHHHHhcCCCCCEEEEeccCcCCCCCccccccCCHHHHHHH
Q 024050 38 VSEEDGISMIKHAFSKGITFFDTADV-YG-QN--ANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSC 113 (273)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gin~~DtA~~-Yg-~g--~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~ 113 (273)
.+.++..+..+.+.+.|++.|-.... .+ .+ ..-..+-+.++..+...+.|....+. .+. .
T Consensus 116 Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ik~~~l~i~~s~G~-----------l~~-----E 179 (379)
T PLN02389 116 MSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRGMGMEVCCTLGM-----------LEK-----E 179 (379)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHHhcCCcEEEECCCC-----------CCH-----H
Confidence 68899999999999999987743211 11 11 11234555555443334445443332 122 2
Q ss_pred HHHHHHHcCCCcccEEEecC-C------CCCCCHHHHHHHHHHHHHcCC
Q 024050 114 CEASLKRLDVDYIDLYYQHR-V------DTSVPIEETIGEMKKLVEEGK 155 (273)
Q Consensus 114 ~~~sL~~L~~d~iDl~~lh~-~------~~~~~~~~~~~~L~~l~~~G~ 155 (273)
.-+.|+..|+|++-.- +.. + -.....++.++.++.+++.|.
T Consensus 180 ~l~~LkeAGld~~~~~-LeTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi 227 (379)
T PLN02389 180 QAAQLKEAGLTAYNHN-LDTSREYYPNVITTRSYDDRLETLEAVREAGI 227 (379)
T ss_pred HHHHHHHcCCCEEEee-ecCChHHhCCcCCCCCHHHHHHHHHHHHHcCC
Confidence 3333555577654331 121 1 012346788999999999985
No 329
>PLN02522 ATP citrate (pro-S)-lyase
Probab=25.90 E-value=1.3e+02 Score=29.47 Aligned_cols=29 Identities=34% Similarity=0.160 Sum_probs=22.8
Q ss_pred CcHHHHHHHHHhcCCCCCEEEEeccCcCC
Q 024050 67 NANEVLLGKALKQLPREKIQVATKFGIAG 95 (273)
Q Consensus 67 g~se~~lg~~l~~~~r~~~~i~tK~~~~~ 95 (273)
|..|+.+-+++++..+.+-+|.-|.+...
T Consensus 234 g~~e~~f~ea~~~a~~~KPVVa~kaGrsa 262 (608)
T PLN02522 234 GRDEYSLVEALKQGKVSKPVVAWVSGTCA 262 (608)
T ss_pred chhHHHHHHHHHHhcCCCCEEEEeccCCC
Confidence 46788888888874577888888988766
No 330
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=25.84 E-value=4.5e+02 Score=22.94 Aligned_cols=99 Identities=14% Similarity=0.186 Sum_probs=59.4
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEe-cCCCCC-CCH-HH---HHHHHHHHHHcCCccEEecCCCCHHHHHHHhhcCCce
Q 024050 106 APDYVRSCCEASLKRLDVDYIDLYYQ-HRVDTS-VPI-EE---TIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHPIT 179 (273)
Q Consensus 106 ~~~~i~~~~~~sL~~L~~d~iDl~~l-h~~~~~-~~~-~~---~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~ 179 (273)
+.+.+.+..++.+ .-|.|-||+--- .+|... .+. +| +...++.+++.-.+ -|.|-++.++.++++++...-.
T Consensus 36 ~~~~a~~~a~~~~-~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~~~-~ISIDT~~~~va~~AL~~Gadi 113 (282)
T PRK11613 36 SLIDAVKHANLMI-NAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRFEV-WISVDTSKPEVIRESAKAGAHI 113 (282)
T ss_pred CHHHHHHHHHHHH-HCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC-eEEEECCCHHHHHHHHHcCCCE
Confidence 4455555544443 346677776532 234432 222 23 45566777654233 3888899999999999885333
Q ss_pred EEeeecccccccccccHHHHHHHhCCeEEecc
Q 024050 180 AVQMEWSLWTRDIEEEIIPLCRELGIGIVPYS 211 (273)
Q Consensus 180 ~~q~~~~l~~~~~~~~l~~~~~~~gi~v~a~s 211 (273)
+|-+ +-+. +.++++.|+++|..++.+.
T Consensus 114 INDI--~g~~---d~~~~~~~a~~~~~vVlmh 140 (282)
T PRK11613 114 INDI--RSLS---EPGALEAAAETGLPVCLMH 140 (282)
T ss_pred EEEC--CCCC---CHHHHHHHHHcCCCEEEEc
Confidence 3333 2222 2467888999999999874
No 331
>PRK07671 cystathionine beta-lyase; Provisional
Probab=25.76 E-value=3.9e+02 Score=24.13 Aligned_cols=49 Identities=10% Similarity=0.075 Sum_probs=24.5
Q ss_pred CHHHHHHHhh-cCCceEEeeeccccccccc-ccHHHHHHHhCCeEEecccC
Q 024050 165 SPGTIRRAHA-VHPITAVQMEWSLWTRDIE-EEIIPLCRELGIGIVPYSPL 213 (273)
Q Consensus 165 ~~~~l~~~~~-~~~~~~~q~~~~l~~~~~~-~~l~~~~~~~gi~v~a~spl 213 (273)
+.+.++++++ ..+..++..+.|+.-.... .++.+.|+++|+.++.=..+
T Consensus 123 d~~~l~~ai~~~tklV~le~P~NPtg~~~dl~~I~~la~~~g~~lvvD~a~ 173 (377)
T PRK07671 123 NLEEVEEAIRPNTKAIYVETPTNPLLKITDIKKISTIAKEKGLLTIVDNTF 173 (377)
T ss_pred CHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCC
Confidence 4555555543 2344455555554332211 55666666666666644443
No 332
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=25.75 E-value=1.6e+02 Score=21.85 Aligned_cols=41 Identities=22% Similarity=0.227 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHHHHHCCCCccccccCCCCCcHHHHHHHHHhcC
Q 024050 38 VSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQL 80 (273)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~se~~lg~~l~~~ 80 (273)
.+.+.-..++...++.|.+.-+.|.-|| -+...+..|++..
T Consensus 13 ys~EfK~~aV~~~~~~g~sv~evA~e~g--Is~~tl~~W~r~y 53 (121)
T PRK09413 13 RTTQEKIAIVQQSFEPGMTVSLVARQHG--VAASQLFLWRKQY 53 (121)
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHC--cCHHHHHHHHHHH
Confidence 3677778899999999999999999999 6999999999863
No 333
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=25.74 E-value=7.3e+02 Score=25.34 Aligned_cols=94 Identities=14% Similarity=0.082 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHc--CCccEEecCCCCHHHHHHHhhcCCceEEeee
Q 024050 107 PDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEE--GKIKYIGLSEASPGTIRRAHAVHPITAVQME 184 (273)
Q Consensus 107 ~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~--G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~ 184 (273)
.+.|++-++.....-.....-+|+|+..+... .+.+.+|.+..++ ..++.|-++|.....+..+ .--|.++.
T Consensus 101 VDdIReLIe~a~~~P~~gr~KVIIIDEah~LT--~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TI----rSRCq~f~ 174 (830)
T PRK07003 101 VDEMAALLERAVYAPVDARFKVYMIDEVHMLT--NHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTV----LSRCLQFN 174 (830)
T ss_pred HHHHHHHHHHHHhccccCCceEEEEeChhhCC--HHHHHHHHHHHHhcCCCeEEEEEECChhhccchh----hhheEEEe
Confidence 34455444433322222344678887765543 3567777777766 5899999998754332222 22345556
Q ss_pred ccccccccc-ccHHHHHHHhCCe
Q 024050 185 WSLWTRDIE-EEIIPLCRELGIG 206 (273)
Q Consensus 185 ~~l~~~~~~-~~l~~~~~~~gi~ 206 (273)
|..+..... .-+...|.+.||.
T Consensus 175 Fk~Ls~eeIv~~L~~Il~~EgI~ 197 (830)
T PRK07003 175 LKQMPAGHIVSHLERILGEERIA 197 (830)
T ss_pred cCCcCHHHHHHHHHHHHHHcCCC
Confidence 665554321 2233444444543
No 334
>PLN02509 cystathionine beta-lyase
Probab=25.72 E-value=5e+02 Score=24.45 Aligned_cols=55 Identities=5% Similarity=0.010 Sum_probs=39.2
Q ss_pred CCHHHHHHHhhc-CCceEEeeeccccccccc-ccHHHHHHHhCCeEEecccCCCccC
Q 024050 164 ASPGTIRRAHAV-HPITAVQMEWSLWTRDIE-EEIIPLCRELGIGIVPYSPLGRGFF 218 (273)
Q Consensus 164 ~~~~~l~~~~~~-~~~~~~q~~~~l~~~~~~-~~l~~~~~~~gi~v~a~spl~~G~L 218 (273)
.+.+.+++++.. .+..++..+.|+.-.... ..+.+.|+++|+.++.=..++.|.+
T Consensus 205 ~d~e~l~~ai~~~TklV~lesPsNPtG~i~Dl~~I~~lAk~~g~~lIVD~A~a~~~~ 261 (464)
T PLN02509 205 TNLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKIAEMAHAQGALVLVDNSIMSPVL 261 (464)
T ss_pred CCHHHHHHhCCcCCeEEEEECCCCCCCCHHHHHHHHHHHHHcCCEEEEECCcccccc
Confidence 456777776653 456677778887655433 7889999999999997777766654
No 335
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=25.37 E-value=2.1e+02 Score=20.82 Aligned_cols=50 Identities=14% Similarity=0.090 Sum_probs=26.7
Q ss_pred CCCHHHHHHHhhcCCceEEeeecccccccccccHHHHHHHhCCeEEeccc
Q 024050 163 EASPGTIRRAHAVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSP 212 (273)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~q~~~~l~~~~~~~~l~~~~~~~gi~v~a~sp 212 (273)
..+++.+..++...+++++-+-----.+....++.++++++||++..+..
T Consensus 38 ~l~~~~l~~~~~~~~peiliiGTG~~~~~~~~~~~~~l~~~gI~vE~m~T 87 (109)
T cd00248 38 DLDPEALLPLLAEDRPDILLIGTGAEIAFLPRALRAALRAAGIGVEVMST 87 (109)
T ss_pred cCCHHHHHHHHhhCCCCEEEEcCCCCCCcCCHHHHHHHHHcCCeEEEeCc
Confidence 34555555555443243333311111112226688889999999887743
No 336
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=25.36 E-value=4.8e+02 Score=23.11 Aligned_cols=104 Identities=14% Similarity=0.091 Sum_probs=52.5
Q ss_pred CHHHHHHHHHHHHHC-CCCccccccCCCCCcHHHHHHHHHhc---CC-CCCEEEEeccCcCCCCCccccccCCHHHHHHH
Q 024050 39 SEEDGISMIKHAFSK-GITFFDTADVYGQNANEVLLGKALKQ---LP-REKIQVATKFGIAGIGVAGVIVKGAPDYVRSC 113 (273)
Q Consensus 39 ~~~~~~~~l~~A~~~-Gin~~DtA~~Yg~g~se~~lg~~l~~---~~-r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~ 113 (273)
+.++..+++++.-+. ||+-+--+....--.....+.+.+.. .+ -+.+-|.||.... .+..|.+.
T Consensus 126 ~~~~~~~~i~~i~~~~~i~~VvltGGEPL~~~d~~L~~ll~~l~~i~~~~~iri~tr~~~~-----------~p~rit~e 194 (321)
T TIGR03821 126 NKAQWKEALEYIAQHPEINEVILSGGDPLMAKDHRLDWLLNLLEQIPHLKRLRIHTRLPVV-----------IPDRITSG 194 (321)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEEeCcccccCCchHHHHHHHHHHhCCCCcEEEEecCccee-----------eHHHhhHH
Confidence 456667767665544 77655444311111122223333322 22 2345577765422 24566666
Q ss_pred HHHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCC
Q 024050 114 CEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGK 155 (273)
Q Consensus 114 ~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ 155 (273)
+-+.|+..+.+.+- .+|--...+--+++.++++.|++.|.
T Consensus 195 l~~~L~~~~~~~~~--~~h~dh~~Ei~d~~~~ai~~L~~~Gi 234 (321)
T TIGR03821 195 LCDLLANSRLQTVL--VVHINHANEIDAEVADALAKLRNAGI 234 (321)
T ss_pred HHHHHHhcCCcEEE--EeeCCChHhCcHHHHHHHHHHHHcCC
Confidence 66677776644332 23432111223567778888888885
No 337
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=25.29 E-value=54 Score=27.95 Aligned_cols=26 Identities=23% Similarity=0.201 Sum_probs=19.3
Q ss_pred HHHHHHHHHHcCCCcccEEEecCCCCC
Q 024050 111 RSCCEASLKRLDVDYIDLYYQHRVDTS 137 (273)
Q Consensus 111 ~~~~~~sL~~L~~d~iDl~~lh~~~~~ 137 (273)
...++..|+-.| +|||.+=+-|-...
T Consensus 24 ~~~~~dlLe~ag-~yID~~K~g~Gt~~ 49 (244)
T PF02679_consen 24 LRYLEDLLESAG-DYIDFLKFGWGTSA 49 (244)
T ss_dssp HHHHHHHHHHHG-GG-SEEEE-TTGGG
T ss_pred HHHHHHHHHHhh-hhccEEEecCceee
Confidence 457788888888 99999999887654
No 338
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=25.20 E-value=61 Score=31.46 Aligned_cols=100 Identities=8% Similarity=-0.029 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCCcccE---------EEecCCCCCCCHHHHHHHHHHHHHcCCccE---EecCCCCHHHHHHHhhc---
Q 024050 111 RSCCEASLKRLDVDYIDL---------YYQHRVDTSVPIEETIGEMKKLVEEGKIKY---IGLSEASPGTIRRAHAV--- 175 (273)
Q Consensus 111 ~~~~~~sL~~L~~d~iDl---------~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~---iGvS~~~~~~l~~~~~~--- 175 (273)
+-.+-+.|.+.|++.|++ +-+.++++...+...-+.+....-+.++|. +|..++.-+.++..++.
T Consensus 23 kl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~~e~~~e~l~~l~~~~~~~~l~~L~Rg~N~~G~~~ypddvv~~~v~~a~~ 102 (582)
T TIGR01108 23 MLPIAEKLDDVGYWSLEVWGGATFDACIRFLNEDPWERLRELKKALPNTPLQMLLRGQNLLGYRHYADDVVERFVKKAVE 102 (582)
T ss_pred HHHHHHHHHHcCCCEEEecCCcccccccccCCCCHHHHHHHHHHhCCCCEEEEEEccccccccccCchhhHHHHHHHHHH
Q ss_pred CCceEEeeecccccccccccHHHHHHHhCCeEEec
Q 024050 176 HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPY 210 (273)
Q Consensus 176 ~~~~~~q~~~~l~~~~~~~~l~~~~~~~gi~v~a~ 210 (273)
..++.+.+-.++-+.+.-...+++++++|..+.+.
T Consensus 103 ~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~ 137 (582)
T TIGR01108 103 NGMDVFRIFDALNDPRNLQAAIQAAKKHGAHAQGT 137 (582)
T ss_pred CCCCEEEEEEecCcHHHHHHHHHHHHHcCCEEEEE
No 339
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=25.06 E-value=4.8e+02 Score=22.99 Aligned_cols=86 Identities=9% Similarity=0.031 Sum_probs=59.0
Q ss_pred ccEEEecCCCCCCCHHHHHHHHHHHHHcCCc-cEEecCCCCHHHHHHHhhcCCceEEeeecccccccccccHHHHHHHhC
Q 024050 126 IDLYYQHRVDTSVPIEETIGEMKKLVEEGKI-KYIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRDIEEEIIPLCRELG 204 (273)
Q Consensus 126 iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~i-r~iGvS~~~~~~l~~~~~~~~~~~~q~~~~l~~~~~~~~l~~~~~~~g 204 (273)
.++.++..|-... .++.+.+|.+.-.+ -..|=|-++...+..+++..-.+++|+..+..--- ..+.+.|+.+|
T Consensus 192 ~~i~~iEqP~~~~----~~~~~~~l~~~~~~Pia~DEs~~~~~d~~~~~~~~a~d~v~ik~~k~GGi--~~~~~~a~~~g 265 (320)
T PRK02714 192 GKIEFIEQPLPPD----QFDEMLQLSQDYQTPIALDESVANLAQLQQCYQQGWRGIFVIKPAIAGSP--SRLRQFCQQHP 265 (320)
T ss_pred CCccEEECCCCcc----cHHHHHHHHHhCCCCEEECCccCCHHHHHHHHHcCCCCEEEEcchhcCCH--HHHHHHHHHhC
Confidence 4677777764422 45666777665433 34455667888888888877778888877765432 45778999999
Q ss_pred CeEEecccCCCcc
Q 024050 205 IGIVPYSPLGRGF 217 (273)
Q Consensus 205 i~v~a~spl~~G~ 217 (273)
|.++..+.+..|+
T Consensus 266 i~~~~~~~~es~i 278 (320)
T PRK02714 266 LDAVFSSVFETAI 278 (320)
T ss_pred CCEEEEechhhHH
Confidence 9999876665554
No 340
>PF13552 DUF4127: Protein of unknown function (DUF4127)
Probab=25.04 E-value=6e+02 Score=24.15 Aligned_cols=131 Identities=13% Similarity=0.155 Sum_probs=78.8
Q ss_pred CHHHHHHHHHHHHHCCCCccccccCCCCCcHH---HHHHHHHhcCCCCCEEEEeccCcCCCCCccccccCCHHHHHHHHH
Q 024050 39 SEEDGISMIKHAFSKGITFFDTADVYGQNANE---VLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCE 115 (273)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~se---~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (273)
+.-|...+....-+.|+ -|-...| +|..| .++.+++.+.....-.|........ .....+.+....+.++++
T Consensus 210 ~~~e~~~L~~~~~~~~l--~~rv~i~-pGADEvg~~LlaRa~n~~~~~~P~v~v~Ys~~~--g~~~vp~YEd~pl~esv~ 284 (497)
T PF13552_consen 210 TAMEQRELEAYIEELGL--SDRVMIY-PGADEVGLLLLARAYNEYKGYKPRVYVRYSSGN--GADTVPPYEDRPLGESVK 284 (497)
T ss_pred CHHHHHHHHHHHHhcCC--CCceeee-CChhHHHHHHHHHHHHHhcCCCceEEEEeCCCC--CCccCCCCCCCCHHHHHH
Confidence 56777788888888886 4666677 56555 5566666652222222322222111 123344555667889999
Q ss_pred HHHHHcCCC------cccE-EEecCCCCCC---------------CHHHHHHHHHHHHHcCCccEE---ecCCCCHHHHH
Q 024050 116 ASLKRLDVD------YIDL-YYQHRVDTSV---------------PIEETIGEMKKLVEEGKIKYI---GLSEASPGTIR 170 (273)
Q Consensus 116 ~sL~~L~~d------~iDl-~~lh~~~~~~---------------~~~~~~~~L~~l~~~G~ir~i---GvS~~~~~~l~ 170 (273)
+-+...|-. ..|+ +.+|.|.... ...+..+.+++++++|+.-+| ..+|-.-..+.
T Consensus 285 ~hI~aaGg~~~~~~~~AD~vL~Vntp~~~~~~~~~~~~~~~~~~~~~~~f~~~I~~~l~~G~~VaiaDva~~NGad~~L~ 364 (497)
T PF13552_consen 285 EHIRAAGGVLVDSPEEADLVLAVNTPGDGMTEESEQFANDDTPYRNLREFVDRIEEYLAKGKPVAIADVAYANGADNALM 364 (497)
T ss_pred HHHHhcCCEEcCCCCCCCEEEEEecCCCccccccccccccccccccHHHHHHHHHHHHHcCCcEEEEEcCcCCCccHHHH
Confidence 999999854 4454 5668874422 356788999999999985442 33444334444
Q ss_pred HHhh
Q 024050 171 RAHA 174 (273)
Q Consensus 171 ~~~~ 174 (273)
+.+.
T Consensus 365 ~~L~ 368 (497)
T PF13552_consen 365 ELLL 368 (497)
T ss_pred HHHH
Confidence 4443
No 341
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=24.90 E-value=60 Score=25.90 Aligned_cols=69 Identities=13% Similarity=0.157 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHcC-CccEEecCCCC--HHHHHHHhhcCCceEEeeecccccccccccHHHHHHHhCCeEEecccC
Q 024050 140 IEETIGEMKKLVEEG-KIKYIGLSEAS--PGTIRRAHAVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPL 213 (273)
Q Consensus 140 ~~~~~~~L~~l~~~G-~ir~iGvS~~~--~~~l~~~~~~~~~~~~q~~~~l~~~~~~~~l~~~~~~~gi~v~a~spl 213 (273)
..+++++|.++++.| +|..+|..|.. ...+.+++. +.+.+..|+- .+.-...+..+++.|+.++.-+.+
T Consensus 63 ~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll~---~~i~~~~~~~--~~e~~~~i~~~~~~G~~viVGg~~ 134 (176)
T PF06506_consen 63 GFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELLG---VDIKIYPYDS--EEEIEAAIKQAKAEGVDVIVGGGV 134 (176)
T ss_dssp HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHHT----EEEEEEESS--HHHHHHHHHHHHHTT--EEEESHH
T ss_pred HhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHhC---CceEEEEECC--HHHHHHHHHHHHHcCCcEEECCHH
Confidence 467888888888666 56666666643 455666664 3455554442 222267888999999999985433
No 342
>cd08590 PI-PLCc_Rv2075c_like Catalytic domain of uncharacterized Mycobacterium tuberculosis Rv2075c-like proteins. This subfamily corresponds to the catalytic domain present in uncharacterized Mycobacterium tuberculosis Rv2075c and its homologs. Members in this family are more closely related to the Streptomyces antibioticus phosphatidylinositol-specific phospholipase C1(SaPLC1)-like proteins rather than the typical bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). In contrast, SaPLC1-like proteins have two Ca2+-chelating amino acid substitutions which convert them to metal-dependent bacterial PI-PLC. Rv2075c and its homologs have the same amino acid substitutions as well, which might suggest they have metal-dependent PI-PLC activity.
Probab=24.79 E-value=2.5e+02 Score=24.23 Aligned_cols=19 Identities=16% Similarity=0.321 Sum_probs=14.1
Q ss_pred HHHHHHHCCCCccccccCC
Q 024050 46 MIKHAFSKGITFFDTADVY 64 (273)
Q Consensus 46 ~l~~A~~~Gin~~DtA~~Y 64 (273)
-|...++.|||+||---+|
T Consensus 46 sI~~QL~~GvR~LdLdv~~ 64 (267)
T cd08590 46 SITDQLDLGARFLELDVHW 64 (267)
T ss_pred CHHHHHhhCCcEEEEeeee
Confidence 4566789999999955443
No 343
>PRK11267 biopolymer transport protein ExbD; Provisional
Probab=24.78 E-value=1.8e+02 Score=22.21 Aligned_cols=54 Identities=22% Similarity=0.183 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEecCC
Q 024050 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE 163 (273)
Q Consensus 105 ~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~ 163 (273)
.+.+.+...+++.++. .-+.-.+=..|...+.+.+.+.|..+++.|. ..|++..
T Consensus 81 v~~~~L~~~L~~~~~~----~~~~~V~I~aD~~~~~~~vv~vmd~l~~aG~-~~v~l~t 134 (141)
T PRK11267 81 VTDETMITALDALTEG----KKDTTIFFRADKTVDYETLMKVMDTLHQAGY-LKIGLVG 134 (141)
T ss_pred ccHHHHHHHHHHHHhc----CCCceEEEEcCCCCCHHHHHHHHHHHHHcCC-CeEEEEe
Confidence 3455555555554432 2233333345667889999999999999995 4588765
No 344
>PF00101 RuBisCO_small: Ribulose bisphosphate carboxylase, small chain; InterPro: IPR000894 RuBisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) is a bifunctional enzyme that catalyses both the carboxylation and oxygenation of ribulose-1,5-bisphosphate (RuBP) [], thus fixing carbon dioxide as the first step of the Calvin cycle. RuBisCO is the major protein in the stroma of chloroplasts, and in higher plants exists as a complex of 8 large and 8 small subunits. The function of the small subunit is unknown []. While the large subunit is coded for by a single gene, the small subunit is coded for by several different genes, which are distributed in a tissue specific manner. They are transcriptionally regulated by light receptor phytochrome [], which results in RuBisCO being more abundant during the day when it is required. The RuBisCo small subunit consists of a central four-stranded beta-sheet, with two helices packed against it [].; PDB: 1BWV_W 1IWA_P 3AXM_X 1WDD_S 3AXK_T 1IR2_K 1RBL_N 1UZH_J 1RSC_P 1UW9_C ....
Probab=24.77 E-value=2.7e+02 Score=20.10 Aligned_cols=75 Identities=21% Similarity=0.208 Sum_probs=49.7
Q ss_pred CCCHHHHHHHHHHHHHCCCCc-cccccCCCCCcHHHHHHHHHhcCCCCCEEEEeccCcCCCCCccccccCCHHHHHHHHH
Q 024050 37 PVSEEDGISMIKHAFSKGITF-FDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCE 115 (273)
Q Consensus 37 ~~~~~~~~~~l~~A~~~Gin~-~DtA~~Yg~g~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (273)
+.+.++..+.|++.+..|.+. +.-|+.= ..|...+-.-|++... ..+++.+..+++
T Consensus 10 ~l~~~~i~~Qv~~ll~qG~~i~iE~ad~r---------------~~r~~~W~mW~~p~~~--------~~~~~~Vl~el~ 66 (99)
T PF00101_consen 10 PLTDEEIAKQVRYLLSQGWIIGIEHADPR---------------RFRTSYWQMWKLPMFG--------CTDPAQVLAELE 66 (99)
T ss_dssp ---HHHHHHHHHHHHHTT-EEEEEEESCG---------------GSTSSS-EEESSEBTT--------BSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHhhhhcCceeeEEecCCC---------------CCCCCEeecCCCCCcC--------CCCHHHHHHHHH
Confidence 457899999999999999763 3332211 2455555555544332 346889999999
Q ss_pred HHHHHcCCCcccEEEecCC
Q 024050 116 ASLKRLDVDYIDLYYQHRV 134 (273)
Q Consensus 116 ~sL~~L~~d~iDl~~lh~~ 134 (273)
+.++.---+||-|+-+...
T Consensus 67 ~c~~~~p~~yVRlig~D~~ 85 (99)
T PF00101_consen 67 ACLAEHPGEYVRLIGFDNK 85 (99)
T ss_dssp HHHHHSTTSEEEEEEEETT
T ss_pred HHHHhCCCceEEEEEEcCc
Confidence 9999999899988766543
No 345
>COG0710 AroD 3-dehydroquinate dehydratase [Amino acid transport and metabolism]
Probab=24.74 E-value=4.3e+02 Score=22.35 Aligned_cols=87 Identities=11% Similarity=0.046 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHHHHCCCCccccccCCCCCc-HHHHHHHHHhcCCCCC-EEEEeccCcCCCCCccccccCCHHHHHHHHHH
Q 024050 39 SEEDGISMIKHAFSKGITFFDTADVYGQNA-NEVLLGKALKQLPREK-IQVATKFGIAGIGVAGVIVKGAPDYVRSCCEA 116 (273)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~-se~~lg~~l~~~~r~~-~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (273)
+.+++.+.+..+.+.+.+.++---.|=..+ +...+-..+.+...++ ++++-+-.. . ++ ....+.+.-.+.+.+
T Consensus 12 ~~~~~~e~~~~~~~~~~Di~E~RvD~l~~~~~~~~~~~~~~e~~~~~~~IfT~R~~~-E---GG-~~~~~~~~~i~ll~~ 86 (231)
T COG0710 12 DIAELKEQAEKSKELDADIVELRVDLLESNVEVLEVAKALREKDPDKPLIFTFRTVK-E---GG-EFPGSEEEYIELLKK 86 (231)
T ss_pred CHHHHHHHHHHhhccCCCEEEEeechhcccchHHHHHHHHHHhccCCceEEEEeehh-h---cC-CCCCCHHHHHHHHHH
Confidence 678898999999999987666655554211 2222333333333444 444444211 1 11 123456666777777
Q ss_pred HHHHcCCCcccEEE
Q 024050 117 SLKRLDVDYIDLYY 130 (273)
Q Consensus 117 sL~~L~~d~iDl~~ 130 (273)
..+.-+.||+|+=+
T Consensus 87 la~~~~~d~iDiEl 100 (231)
T COG0710 87 LAELNGPDYIDIEL 100 (231)
T ss_pred HHhhcCCCEEEEEc
Confidence 77777789998743
No 346
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=24.72 E-value=5e+02 Score=23.09 Aligned_cols=76 Identities=13% Similarity=0.061 Sum_probs=42.3
Q ss_pred HHHHHHHHHHcCCccEEecCC---------CCHHHHHHHhhcCCceEEe-eeccccc--ccccccHHHHHHHhCCeEEec
Q 024050 143 TIGEMKKLVEEGKIKYIGLSE---------ASPGTIRRAHAVHPITAVQ-MEWSLWT--RDIEEEIIPLCRELGIGIVPY 210 (273)
Q Consensus 143 ~~~~L~~l~~~G~ir~iGvS~---------~~~~~l~~~~~~~~~~~~q-~~~~l~~--~~~~~~l~~~~~~~gi~v~a~ 210 (273)
..+.++.+.+-+.++.|.++. .+.+.++ .++......++ ...|.-. .....+.++.+++.|+.+...
T Consensus 178 L~~ll~~L~~i~~~~~IRi~tr~~~~~P~rit~el~~-~L~~~~~~~~~vsh~nh~~Ei~~~~~~ai~~L~~aGi~v~~q 256 (331)
T TIGR00238 178 LEWLLKRLEEIPHLVRLRIGTRLPVVIPQRITDELCE-LLASFELQLMLVTHINHCNEITEEFAEAMKKLRTVNVTLLNQ 256 (331)
T ss_pred HHHHHHHHHhcCCccEEEeecCCCccCchhcCHHHHH-HHHhcCCcEEEEccCCChHhCCHHHHHHHHHHHHcCCEEEee
Confidence 556666676666665555432 2333333 34332322332 2333321 011155677788999999999
Q ss_pred ccCCCccCC
Q 024050 211 SPLGRGFFG 219 (273)
Q Consensus 211 spl~~G~L~ 219 (273)
++|..|.--
T Consensus 257 tvLl~gvnD 265 (331)
T TIGR00238 257 SVLLRGVND 265 (331)
T ss_pred cceECCcCC
Confidence 999988633
No 347
>PRK05939 hypothetical protein; Provisional
Probab=24.69 E-value=3.9e+02 Score=24.41 Aligned_cols=53 Identities=19% Similarity=0.115 Sum_probs=31.8
Q ss_pred CCHHHHHHHhhc-CCceEEeeeccccccccc-ccHHHHHHHhCCeEEecccCCCc
Q 024050 164 ASPGTIRRAHAV-HPITAVQMEWSLWTRDIE-EEIIPLCRELGIGIVPYSPLGRG 216 (273)
Q Consensus 164 ~~~~~l~~~~~~-~~~~~~q~~~~l~~~~~~-~~l~~~~~~~gi~v~a~spl~~G 216 (273)
.+.+.+++++.. .+..++..+.|+.-.-.. .++.+.|+++|+.++.=..++.+
T Consensus 119 ~d~e~l~~~l~~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~t~a~~ 173 (397)
T PRK05939 119 TDVQNVAAAIRPNTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTMTSP 173 (397)
T ss_pred CCHHHHHHhCCCCCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEECCcccc
Confidence 356667766543 445555555565443222 67888888888888765555444
No 348
>COG0218 Predicted GTPase [General function prediction only]
Probab=24.38 E-value=4.1e+02 Score=21.96 Aligned_cols=100 Identities=14% Similarity=-0.008 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHC------CCCccccccCCCCCcHHHHHHHHHhcCCCCCEEEEeccCcCCCCCccccccCCHHHHHHH
Q 024050 40 EEDGISMIKHAFSK------GITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSC 113 (273)
Q Consensus 40 ~~~~~~~l~~A~~~------Gin~~DtA~~Yg~g~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~ 113 (273)
.+...+++...++. .+-++|.-..- -..+..+=+++......=+++.||.-. .......+.
T Consensus 90 ~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~--~~~D~em~~~l~~~~i~~~vv~tK~DK-----------i~~~~~~k~ 156 (200)
T COG0218 90 KEKWKKLIEEYLEKRANLKGVVLLIDARHPP--KDLDREMIEFLLELGIPVIVVLTKADK-----------LKKSERNKQ 156 (200)
T ss_pred HHHHHHHHHHHHhhchhheEEEEEEECCCCC--cHHHHHHHHHHHHcCCCeEEEEEcccc-----------CChhHHHHH
Confidence 45556677766654 23456654322 245677778887767777889999753 335667788
Q ss_pred HHHHHHHcCCCcccE--EEecCCCCCCCHHHHHHHHHHHHH
Q 024050 114 CEASLKRLDVDYIDL--YYQHRVDTSVPIEETIGEMKKLVE 152 (273)
Q Consensus 114 ~~~sL~~L~~d~iDl--~~lh~~~~~~~~~~~~~~L~~l~~ 152 (273)
+....+.|+.+..|- +.+........+++.+..+.+...
T Consensus 157 l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 157 LNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred HHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhh
Confidence 889999998777775 555555555668888888776654
No 349
>cd08620 PI-PLCXDc_like_1 Catalytic domain of uncharacterized hypothetical proteins similar to eukaryotic phosphatidylinositol-specific phospholipase C, X domain containing proteins. This subfamily corresponds to the catalytic domain present in a group of uncharacterized hypothetical proteins found in bacteria and fungi, which are similar to eukaryotic phosphatidylinositol-specific phospholipase C, X domain containing proteins (PI-PLCXD). The typical eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) has a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. The catalytic core domain is assembled from two highly conserved X- and Y-regions split by a divergent linker sequence. In contrast, eukaryotic PI-PLCXDs contain a single TIM-barrel type catalytic domain, X domain, and are more closely related to bacterial PI-PLCs, which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidyl
Probab=24.36 E-value=3.1e+02 Score=23.89 Aligned_cols=18 Identities=22% Similarity=0.503 Sum_probs=12.8
Q ss_pred HHHHHHCCCCccccccCC
Q 024050 47 IKHAFSKGITFFDTADVY 64 (273)
Q Consensus 47 l~~A~~~Gin~~DtA~~Y 64 (273)
+..=++.|||+||-=..|
T Consensus 36 i~~QL~~GiRyfDlRv~~ 53 (281)
T cd08620 36 VSTQLALGARYFDFRPGY 53 (281)
T ss_pred HHHHHhcCcEEEEEEeee
Confidence 444578999999885443
No 350
>PRK09389 (R)-citramalate synthase; Provisional
Probab=24.28 E-value=4e+02 Score=25.29 Aligned_cols=107 Identities=20% Similarity=0.207 Sum_probs=0.0
Q ss_pred CCccccccCCHHHHHHHHHHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcC-CccEEecCCCCHHHHHHHhhc
Q 024050 97 GVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEG-KIKYIGLSEASPGTIRRAHAV 175 (273)
Q Consensus 97 ~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G-~ir~iGvS~~~~~~l~~~~~~ 175 (273)
+...+...++.+.-.+-++. |.++|+|+|.+-+.-.+ ..-++.+..+.+.+ ..+-.+++....+.++.+.+.
T Consensus 13 G~Q~~g~~~s~e~K~~ia~~-L~~~Gv~~IE~G~p~~~------~~d~e~v~~i~~~~~~~~i~a~~r~~~~di~~a~~~ 85 (488)
T PRK09389 13 GEQTPGVSLTPEEKLEIARK-LDELGVDVIEAGSAITS------EGEREAIKAVTDEGLNAEICSFARAVKVDIDAALEC 85 (488)
T ss_pred cCCCCCCCcCHHHHHHHHHH-HHHcCCCEEEEeCCcCC------HHHHHHHHHHHhcCCCcEEEeecccCHHHHHHHHhC
Q ss_pred --------CCceEEeeeccccccccc-----ccHHHHHHHhCCeEEec
Q 024050 176 --------HPITAVQMEWSLWTRDIE-----EEIIPLCRELGIGIVPY 210 (273)
Q Consensus 176 --------~~~~~~q~~~~l~~~~~~-----~~l~~~~~~~gi~v~a~ 210 (273)
.+..-.++.+++-....+ .+.+++|+++|+.|...
T Consensus 86 g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~ 133 (488)
T PRK09389 86 DVDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELS 133 (488)
T ss_pred CcCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEE
No 351
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=24.26 E-value=5.7e+02 Score=23.60 Aligned_cols=69 Identities=14% Similarity=-0.061 Sum_probs=41.6
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEecCC---C-CHHHHHHHhh
Q 024050 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE---A-SPGTIRRAHA 174 (273)
Q Consensus 105 ~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~---~-~~~~l~~~~~ 174 (273)
.+++.+.+.+++.+.-.. ...+-+.+-...+......+.+.|+.+++.|.--+|+.+| + +.+.++++.+
T Consensus 54 ~t~~evl~ev~~d~~~~~-~~~ggVtisGGGepl~~~~l~eLl~~lk~~gi~taI~~TnG~~l~~~e~~~~L~~ 126 (404)
T TIGR03278 54 IPPQVVLGEVQTSLGFRT-GRDTKVTISGGGDVSCYPELEELTKGLSDLGLPIHLGYTSGKGFDDPEIAEFLID 126 (404)
T ss_pred CCHHHHHHHHHHHHHHhc-CCCCEEEEECCcccccCHHHHHHHHHHHhCCCCEEEeCCCCcccCCHHHHHHHHH
Confidence 356677777777666443 1245556665555455567777777788777766666333 2 4455555544
No 352
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=24.26 E-value=3e+02 Score=27.47 Aligned_cols=146 Identities=17% Similarity=0.112 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHCCCCccccccCCCCCcHHHHHHHHHhcCCCCCEEEEeccCcCCCCCccccccCCHHHHHHHHHHHHH
Q 024050 40 EEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLK 119 (273)
Q Consensus 40 ~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~ 119 (273)
.+-+.+++++|-|.|++.+ ..|. |.--...=+ .+-++-|+.-|.-+.. + ..=.|.+-++- -+
T Consensus 42 gEIaIRvFRa~tEL~~~tv---AiYs----eqD~~sMHR-qKADEaY~iGk~l~PV---~------AYL~ideii~i-ak 103 (1176)
T KOG0369|consen 42 GEIAIRVFRAATELSMRTV---AIYS----EQDRLSMHR-QKADEAYLIGKGLPPV---G------AYLAIDEIISI-AK 103 (1176)
T ss_pred CcchhHHHHHHhhhcceEE---EEEe----ccchhhhhh-hccccceecccCCCch---h------hhhhHHHHHHH-HH
Confidence 4567899999999999855 4674 332332223 4567778888853222 0 11123333332 23
Q ss_pred HcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEecCCCCHHHHHHH----------hhcCCceEEeeeccccc
Q 024050 120 RLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRA----------HAVHPITAVQMEWSLWT 189 (273)
Q Consensus 120 ~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~----------~~~~~~~~~q~~~~l~~ 189 (273)
+-+ +|.+ | |.. .-+.|--+.-++.++.| |+.||=|. +.+... ++..-+ ++--.=.++.
T Consensus 104 ~~~---vdav--H-PGY-GFLSErsdFA~av~~AG-i~fiGPsp---eVi~~mGDKv~AR~~Ai~agVp-vVPGTpgPit 171 (1176)
T KOG0369|consen 104 KHN---VDAV--H-PGY-GFLSERSDFAQAVQDAG-IRFIGPSP---EVIDSMGDKVAARAIAIEAGVP-VVPGTPGPIT 171 (1176)
T ss_pred HcC---CCee--c-CCc-cccccchHHHHHHHhcC-ceEeCCCH---HHHHHhhhHHHHHHHHHHcCCC-ccCCCCCCcc
Confidence 333 3432 3 111 11233334444555566 67899774 333222 111111 1111111111
Q ss_pred ccccccHHHHHHHhCCeEEecccCCCcc
Q 024050 190 RDIEEEIIPLCRELGIGIVPYSPLGRGF 217 (273)
Q Consensus 190 ~~~~~~l~~~~~~~gi~v~a~spl~~G~ 217 (273)
. .++..++|+++|..||-...+++|-
T Consensus 172 t--~~EA~eF~k~yG~PvI~KAAyGGGG 197 (1176)
T KOG0369|consen 172 T--VEEALEFVKEYGLPVIIKAAYGGGG 197 (1176)
T ss_pred c--HHHHHHHHHhcCCcEEEeecccCCC
Confidence 1 1778999999999999999998774
No 353
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....
Probab=24.21 E-value=2.6e+02 Score=22.39 Aligned_cols=102 Identities=20% Similarity=0.149 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHCCCCccccccC-CCCCcHHHHHHHHHhcCCCCCEEEEeccCcCCCCCccccccCCHHHHHHHHHHHH
Q 024050 40 EEDGISMIKHAFSKGITFFDTADV-YGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASL 118 (273)
Q Consensus 40 ~~~~~~~l~~A~~~Gin~~DtA~~-Yg~g~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL 118 (273)
+...+.-++.-+..|..+ +|... |+. +..|+ .+.-++|+|-.++.......-......+.+...++..+
T Consensus 94 Pa~lK~~iD~v~~~g~~~-~~~~g~~~~-------~~~L~--gKk~~~i~t~g~~~~~~~~~g~~~~~~~~~~~~~~~~~ 163 (199)
T PF02525_consen 94 PAQLKGWIDRVFTPGFTF-YTPDGKYPS-------GGLLK--GKKALLIVTSGGPEYSYGPPGIPGRSMDHLLPYLRGIL 163 (199)
T ss_dssp -HHHHHHHHHHSHTTTSE-EETTSTTCG-------EESTT--TSEEEEEEEESSSGGGGSTTSSTTSHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHhCcCCeee-ecccccccc-------ccccc--cccEEEEEcCCCChHHhcccCCCCCChhhhHHHHHHHH
Confidence 577888888888889987 65543 320 01222 23334455544332210000011224567777899999
Q ss_pred HHcCCCcccEEEecCCCCCCCHHHHHHHHHHHH
Q 024050 119 KRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLV 151 (273)
Q Consensus 119 ~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~ 151 (273)
+-+|.+.++.+.++..+.....+..-++++++.
T Consensus 164 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (199)
T PF02525_consen 164 KFCGIKDVESFSFEGVDNPDREEALEKALERAA 196 (199)
T ss_dssp HHTTEEEEEEEEEESTTTCCHHHHHHHHHHHHH
T ss_pred HhCCCceeeEEEEeCCCCCChHHHHHHHHHHHH
Confidence 999999999999998763222233334444443
No 354
>PRK07503 methionine gamma-lyase; Provisional
Probab=24.17 E-value=4.1e+02 Score=24.23 Aligned_cols=53 Identities=9% Similarity=0.113 Sum_probs=34.8
Q ss_pred CCHHHHHHHhhc-CCceEEeeeccccccccc-ccHHHHHHHhCCeEEecccCCCc
Q 024050 164 ASPGTIRRAHAV-HPITAVQMEWSLWTRDIE-EEIIPLCRELGIGIVPYSPLGRG 216 (273)
Q Consensus 164 ~~~~~l~~~~~~-~~~~~~q~~~~l~~~~~~-~~l~~~~~~~gi~v~a~spl~~G 216 (273)
.+++.+++++.. .+..++..+.|+.-.... .++.+.|+++|+.++.=.+++.+
T Consensus 138 ~d~~~l~~~i~~~tklV~le~p~NPtG~~~di~~I~~la~~~gi~lIvD~a~a~~ 192 (403)
T PRK07503 138 TDPAALKAAISDKTRMVYFETPANPNMRLVDIAAVAEIAHGAGAKVVVDNTYCTP 192 (403)
T ss_pred CCHHHHHHhcCccCcEEEEeCCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCccc
Confidence 467777776643 455555556666554322 77899999999988866665544
No 355
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=23.89 E-value=4.9e+02 Score=22.69 Aligned_cols=106 Identities=12% Similarity=0.145 Sum_probs=54.0
Q ss_pred CHHHHHHHHHHHHHHc---CCCcccEEEecCC--CCCCCHH----HHHHHHHHHHHcCCccE-Eec---CCCCHHHHHHH
Q 024050 106 APDYVRSCCEASLKRL---DVDYIDLYYQHRV--DTSVPIE----ETIGEMKKLVEEGKIKY-IGL---SEASPGTIRRA 172 (273)
Q Consensus 106 ~~~~i~~~~~~sL~~L---~~d~iDl~~lh~~--~~~~~~~----~~~~~L~~l~~~G~ir~-iGv---S~~~~~~l~~~ 172 (273)
+++.+.......++.+ |+.|+|+..--.. ......+ ...+++.+.+++--||. +.+ .+.+++.+++.
T Consensus 67 ~~ed~~~~~~~~~~e~~~~Gvt~~E~~~~p~~~~~~~~~~~~~~~~~~~ai~~~~~~~gi~~~l~~~~~~~~~~~~~~~~ 146 (325)
T cd01320 67 TEEDFERLAYEYLEDAAADGVVYAEIRFSPQLHTRRGLSFDEVVEAVLRGLDEAEAEFGIKARLILCGLRHLSPESAQET 146 (325)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEEeCchhhccCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEEEecCCCCHHHHHHH
Confidence 4666666666665555 7889997633211 1112233 34567777665543432 222 23444544444
Q ss_pred hhc----CCceEEeeecccc----cccccccHHHHHHHhCCeEEecc
Q 024050 173 HAV----HPITAVQMEWSLW----TRDIEEEIIPLCRELGIGIVPYS 211 (273)
Q Consensus 173 ~~~----~~~~~~q~~~~l~----~~~~~~~l~~~~~~~gi~v~a~s 211 (273)
++. ..-.++-+...-- ....-..+++.|+++|+.+....
T Consensus 147 ~~~~~~~~~~~vvg~~l~~~~~~~~~~~~~~~~~~A~~~g~~v~~H~ 193 (325)
T cd01320 147 LELALKYRDKGVVGFDLAGDEVGFPPEKFVRAFQRAREAGLRLTAHA 193 (325)
T ss_pred HHHHHhccCCCEEEeecCCCCCCCCHHHHHHHHHHHHHCCCceEEeC
Confidence 432 1111222222211 11112678999999998888773
No 356
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=23.76 E-value=1.1e+02 Score=27.01 Aligned_cols=47 Identities=23% Similarity=0.255 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCc
Q 024050 107 PDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKI 156 (273)
Q Consensus 107 ~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~i 156 (273)
.+...+.+++.+++||++ .|.+.-. ........+.+.+++|+++|.+
T Consensus 68 ~~~~~~~~~~~l~~LgI~-~D~~~~t--t~~~~~~~v~~i~~~L~ekG~i 114 (319)
T cd00814 68 CDKYHEIFKDLFKWLNIS-FDYFIRT--TSPRHKEIVQEFFKKLYENGYI 114 (319)
T ss_pred HHHHHHHHHHHHHHcCCc-CCCCeeC--CCHHHHHHHHHHHHHHHHCCCE
Confidence 566788899999999986 5754321 1112345678899999999998
No 357
>PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) []. Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A ....
Probab=23.73 E-value=41 Score=27.24 Aligned_cols=19 Identities=37% Similarity=0.326 Sum_probs=12.3
Q ss_pred HHHHHcCCCcccEEEecCC
Q 024050 116 ASLKRLDVDYIDLYYQHRV 134 (273)
Q Consensus 116 ~sL~~L~~d~iDl~~lh~~ 134 (273)
+.|+.||+||||==-+=.|
T Consensus 87 qiLealgVD~IDESEVLTp 105 (208)
T PF01680_consen 87 QILEALGVDYIDESEVLTP 105 (208)
T ss_dssp HHHHHTT-SEEEEETTS--
T ss_pred hhHHHhCCceecccccccc
Confidence 6789999999996443333
No 358
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=23.69 E-value=4.2e+02 Score=23.92 Aligned_cols=50 Identities=10% Similarity=0.024 Sum_probs=31.2
Q ss_pred CHHHHHHHhhc-CCceEEeeecccccccc-cccHHHHHHHhCCeEEecccCC
Q 024050 165 SPGTIRRAHAV-HPITAVQMEWSLWTRDI-EEEIIPLCRELGIGIVPYSPLG 214 (273)
Q Consensus 165 ~~~~l~~~~~~-~~~~~~q~~~~l~~~~~-~~~l~~~~~~~gi~v~a~spl~ 214 (273)
+++.++++++. .+..++..+.|+.-... ..++.+.|+++|+.++.=..++
T Consensus 128 d~~~l~~~i~~~tklV~le~p~np~g~~~dl~~I~~la~~~gi~livD~a~~ 179 (380)
T TIGR01325 128 DLNAWEAAVKPNTKLVFVETPSNPLGELVDIAALAELAHAIGALLVVDNVFA 179 (380)
T ss_pred CHHHHHHhcCCCceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCc
Confidence 56666665532 44556666666544322 2778888999898888554444
No 359
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]
Probab=23.55 E-value=73 Score=27.14 Aligned_cols=23 Identities=22% Similarity=0.530 Sum_probs=20.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCC
Q 024050 33 GYSSPVSEEDGISMIKHAFSKGI 55 (273)
Q Consensus 33 ~~~~~~~~~~~~~~l~~A~~~Gi 55 (273)
.|...++++++.+++..|+++||
T Consensus 178 r~k~dlt~eea~~Lv~eAi~AGi 200 (271)
T KOG0173|consen 178 RWKPDLTKEEAIKLVCEAIAAGI 200 (271)
T ss_pred hcCcccCHHHHHHHHHHHHHhhh
Confidence 57667899999999999999998
No 360
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=23.53 E-value=4.6e+02 Score=22.22 Aligned_cols=94 Identities=13% Similarity=0.074 Sum_probs=51.5
Q ss_pred cCCHHHHHHHHHHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEecCCCCHH-----HHHHHhhcCCc
Q 024050 104 KGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPG-----TIRRAHAVHPI 178 (273)
Q Consensus 104 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~-----~l~~~~~~~~~ 178 (273)
..+++.+.+.+++..+ +|. |.+.|-+........++.+.+..+++.-.+ .||+=.|+-- ....++... .
T Consensus 135 ~~~~~~~~~~~~~~~~-~G~---~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~-~l~~H~Hn~~Gla~An~laAi~aG-~ 208 (259)
T cd07939 135 RADPDFLIEFAEVAQE-AGA---DRLRFADTVGILDPFTTYELIRRLRAATDL-PLEFHAHNDLGLATANTLAAVRAG-A 208 (259)
T ss_pred CCCHHHHHHHHHHHHH-CCC---CEEEeCCCCCCCCHHHHHHHHHHHHHhcCC-eEEEEecCCCChHHHHHHHHHHhC-C
Confidence 3568888888887654 675 445555544444456666667777765333 5888766532 222233322 3
Q ss_pred eEEeeeccccccc----ccccHHHHHHHh
Q 024050 179 TAVQMEWSLWTRD----IEEEIIPLCREL 203 (273)
Q Consensus 179 ~~~q~~~~l~~~~----~~~~l~~~~~~~ 203 (273)
+.+....+=+-.. +.+.++..+++.
T Consensus 209 ~~vd~s~~G~G~~aGN~~tE~lv~~l~~~ 237 (259)
T cd07939 209 THVSVTVNGLGERAGNAALEEVVMALKHL 237 (259)
T ss_pred CEEEEecccccccccCcCHHHHHHHHHHh
Confidence 4444444433322 115677777665
No 361
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=23.53 E-value=6.1e+02 Score=23.69 Aligned_cols=21 Identities=5% Similarity=0.085 Sum_probs=17.3
Q ss_pred CCHHHHHHHHHHHHHCCCCcc
Q 024050 38 VSEEDGISMIKHAFSKGITFF 58 (273)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gin~~ 58 (273)
.+.++..+-++...+.|+..|
T Consensus 184 r~~e~Il~ei~~l~~~G~keI 204 (459)
T PRK14338 184 RPLAEIVEEVRRIAARGAKEI 204 (459)
T ss_pred CCHHHHHHHHHHHHHCCCeEE
Confidence 478889999999999997654
No 362
>PRK03459 rnpA ribonuclease P; Reviewed
Probab=23.47 E-value=3.2e+02 Score=20.44 Aligned_cols=63 Identities=11% Similarity=-0.007 Sum_probs=42.7
Q ss_pred CCCCCEEEEeccCcCCCCCccccccCCHHHHHHHHHHHHHHcCC---CcccEEEecCCCCC-CCHHHHHHHHHHHHH
Q 024050 80 LPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDV---DYIDLYYQHRVDTS-VPIEETIGEMKKLVE 152 (273)
Q Consensus 80 ~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~---d~iDl~~lh~~~~~-~~~~~~~~~L~~l~~ 152 (273)
.+|=-+.|+-|++... .+..++..++++...+.. .-.|++++-.+... .+..+..+.|..+.+
T Consensus 47 ~~R~G~~VsKKvG~AV----------~RNRiKR~lRe~~R~~~~~l~~g~D~Viiar~~~~~~~~~~l~~~l~~ll~ 113 (122)
T PRK03459 47 GPRFGLVVSKAVGNAV----------IRHRVSRRLRHICADIVDQVPETHHVVIRALPGAATASSAELERDVRAGLG 113 (122)
T ss_pred CCEEEEEEeeeccchh----------HHHHHHHHHHHHHHHhhhccCCCcEEEEEECcccccCCHHHHHHHHHHHHH
Confidence 3455677777876532 367788888888877764 34799999887654 456666666666544
No 363
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=23.46 E-value=3.1e+02 Score=20.30 Aligned_cols=27 Identities=15% Similarity=0.301 Sum_probs=21.8
Q ss_pred ccccHHHHHHHhCCeEEecccCCCccC
Q 024050 192 IEEEIIPLCRELGIGIVPYSPLGRGFF 218 (273)
Q Consensus 192 ~~~~l~~~~~~~gi~v~a~spl~~G~L 218 (273)
+.+.++++++++++.++..+.-+.+.+
T Consensus 91 ~~~~I~~~a~~~~~dlIV~Gs~g~~~l 117 (146)
T cd01989 91 VAKAIVEYVADHGITKLVMGASSDNHF 117 (146)
T ss_pred HHHHHHHHHHHcCCCEEEEeccCCCce
Confidence 347799999999999999887776543
No 364
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=23.46 E-value=5.5e+02 Score=23.14 Aligned_cols=100 Identities=12% Similarity=0.107 Sum_probs=57.4
Q ss_pred CCHHHHHHHHHHHHHCCCCccccccCCCCC-cHHHHHHHHHhcCCCC--CEEEEeccCcCCCCCccccccCCHHHHHHHH
Q 024050 38 VSEEDGISMIKHAFSKGITFFDTADVYGQN-ANEVLLGKALKQLPRE--KIQVATKFGIAGIGVAGVIVKGAPDYVRSCC 114 (273)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g-~se~~lg~~l~~~~r~--~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~ 114 (273)
.+.++..+.++.+.+.|++-|=....-++- ..-..+.+.++..+.. ++-| .+. ..+.+.+
T Consensus 103 Ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~~~~e~l~eii~~Ik~~~p~i~I--ei~-----------~lt~e~~---- 165 (366)
T TIGR02351 103 LNEEEIEREIEAIKKSGFKEILLVTGESEKAAGVEYIAEAIKLAREYFSSLAI--EVQ-----------PLNEEEY---- 165 (366)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEeeCCCCCCCCHHHHHHHHHHHHHhCCcccc--ccc-----------cCCHHHH----
Confidence 578999999999999999865433211111 1123355555542111 1111 111 1234444
Q ss_pred HHHHHHcCCCcccEEE----------ecCCCCCCCHHHHHHHHHHHHHcCC
Q 024050 115 EASLKRLDVDYIDLYY----------QHRVDTSVPIEETIGEMKKLVEEGK 155 (273)
Q Consensus 115 ~~sL~~L~~d~iDl~~----------lh~~~~~~~~~~~~~~L~~l~~~G~ 155 (273)
+-|+..|++.+-+.+ +|........++.+++++.+++.|.
T Consensus 166 -~~Lk~aGv~r~~i~lET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~aG~ 215 (366)
T TIGR02351 166 -KKLVEAGLDGVTVYQETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKAGM 215 (366)
T ss_pred -HHHHHcCCCEEEEEeecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCC
Confidence 567778887765543 2222233457888999999999996
No 365
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=23.41 E-value=5.6e+02 Score=23.24 Aligned_cols=99 Identities=15% Similarity=0.106 Sum_probs=57.4
Q ss_pred cCCHHHHHHHHHHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCC-ccEEecCCCCHHHHHHHhhcCCceEEe
Q 024050 104 KGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGK-IKYIGLSEASPGTIRRAHAVHPITAVQ 182 (273)
Q Consensus 104 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~-ir~iGvS~~~~~~l~~~~~~~~~~~~q 182 (273)
.++.+.. ..+-+.|.++|+++|++- +|... ++-++.+..+.+.|. .+-++.+-...+.++.+.+.. ++.+.
T Consensus 22 ~~s~e~k-~~ia~~L~~~GV~~IE~G---~p~~~---~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g-~~~i~ 93 (378)
T PRK11858 22 VFTNEEK-LAIARMLDEIGVDQIEAG---FPAVS---EDEKEAIKAIAKLGLNASILALNRAVKSDIDASIDCG-VDAVH 93 (378)
T ss_pred CCCHHHH-HHHHHHHHHhCCCEEEEe---CCCcC---hHHHHHHHHHHhcCCCeEEEEEcccCHHHHHHHHhCC-cCEEE
Confidence 4555544 455566999999999985 33221 223555566655554 444555555567788777663 33344
Q ss_pred eecccccc--------------cccccHHHHHHHhCCeEEec
Q 024050 183 MEWSLWTR--------------DIEEEIIPLCRELGIGIVPY 210 (273)
Q Consensus 183 ~~~~l~~~--------------~~~~~l~~~~~~~gi~v~a~ 210 (273)
+-...-+. +.-.+.+++++++|+.|...
T Consensus 94 i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~ 135 (378)
T PRK11858 94 IFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFS 135 (378)
T ss_pred EEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 43332221 00156788999999887764
No 366
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=23.39 E-value=4.1e+02 Score=21.60 Aligned_cols=100 Identities=20% Similarity=0.166 Sum_probs=60.2
Q ss_pred CCHHHHHHHHHHHHHCCCCccccccCCCCCcHHHHHHHHHhcCCCCCEEEEeccCcCCCCCccccccCCHHHHHHHHHHH
Q 024050 38 VSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEAS 117 (273)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~s 117 (273)
.+.++..++++.|.+.|+.-+=+.+.+ - +...+.++ ...+.+.+=.+... + ..+.+....++++.
T Consensus 14 ~t~~~i~~~~~~a~~~~~~av~v~p~~----v-~~~~~~l~---~~~~~v~~~~~fp~---g----~~~~~~k~~eve~A 78 (203)
T cd00959 14 ATEEDIRKLCDEAKEYGFAAVCVNPCF----V-PLAREALK---GSGVKVCTVIGFPL---G----ATTTEVKVAEAREA 78 (203)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcHHH----H-HHHHHHcC---CCCcEEEEEEecCC---C----CCcHHHHHHHHHHH
Confidence 378999999999999876654433322 2 22333343 23455555443222 1 13355566678877
Q ss_pred HHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHc
Q 024050 118 LKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEE 153 (273)
Q Consensus 118 L~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~ 153 (273)
++ +|.|-+|++.--..-.....++.++.+.++++.
T Consensus 79 ~~-~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~ 113 (203)
T cd00959 79 IA-DGADEIDMVINIGALKSGDYEAVYEEIAAVVEA 113 (203)
T ss_pred HH-cCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHh
Confidence 76 699999998865432233445667777777665
No 367
>cd03527 RuBisCO_small Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits.
Probab=23.33 E-value=3e+02 Score=19.96 Aligned_cols=75 Identities=17% Similarity=0.163 Sum_probs=54.2
Q ss_pred CCCCHHHHHHHHHHHHHCCCC-ccccccCCCCCcHHHHHHHHHhcCCCCCEEEEeccCcCCCCCccccccCCHHHHHHHH
Q 024050 36 SPVSEEDGISMIKHAFSKGIT-FFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCC 114 (273)
Q Consensus 36 ~~~~~~~~~~~l~~A~~~Gin-~~DtA~~Yg~g~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~ 114 (273)
.++++++..+.|++++..|.+ .+.-|+. ...|...+-+-|++... ..++..+...|
T Consensus 10 p~lt~~~i~~QI~yll~qG~~~~lE~ad~---------------~~~~~~yW~mwklP~f~--------~~d~~~Vl~ei 66 (99)
T cd03527 10 PPLTDEQIAKQIDYIISNGWAPCLEFTEP---------------EHYDNRYWTMWKLPMFG--------CTDPAQVLREI 66 (99)
T ss_pred CCCCHHHHHHHHHHHHhCCCEEEEEcccC---------------CCCCCCEEeeccCCCCC--------CCCHHHHHHHH
Confidence 356899999999999999976 1221111 14677788777765433 24588999999
Q ss_pred HHHHHHcCCCcccEEEecC
Q 024050 115 EASLKRLDVDYIDLYYQHR 133 (273)
Q Consensus 115 ~~sL~~L~~d~iDl~~lh~ 133 (273)
++.++.-.-+||-|+=+..
T Consensus 67 ~~C~~~~p~~YVRliG~D~ 85 (99)
T cd03527 67 EACRKAYPDHYVRVVGFDN 85 (99)
T ss_pred HHHHHHCCCCeEEEEEEeC
Confidence 9999998888887776554
No 368
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=23.32 E-value=4.9e+02 Score=22.53 Aligned_cols=17 Identities=18% Similarity=0.348 Sum_probs=12.8
Q ss_pred ccHHHHHHHhCCeEEec
Q 024050 194 EEIIPLCRELGIGIVPY 210 (273)
Q Consensus 194 ~~l~~~~~~~gi~v~a~ 210 (273)
.++.+.|+++||..+-.
T Consensus 137 ~~~~~~~~~~gi~~I~l 153 (265)
T COG0159 137 DELLKAAEKHGIDPIFL 153 (265)
T ss_pred HHHHHHHHHcCCcEEEE
Confidence 56888888888887743
No 369
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=23.22 E-value=6.3e+02 Score=23.74 Aligned_cols=99 Identities=16% Similarity=0.182 Sum_probs=58.4
Q ss_pred CCHHHHHHHHHHH----HHHcC-CCcccEEEecCCCCCCCHHHHHHHHHHHHHc-CCccEEecCCCCHHHHHHHhhcC-C
Q 024050 105 GAPDYVRSCCEAS----LKRLD-VDYIDLYYQHRVDTSVPIEETIGEMKKLVEE-GKIKYIGLSEASPGTIRRAHAVH-P 177 (273)
Q Consensus 105 ~~~~~i~~~~~~s----L~~L~-~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~-G~ir~iGvS~~~~~~l~~~~~~~-~ 177 (273)
.+.+.+.+.++.. .++.| .=.+|++-|+.... +.+.....++.+++. +.- +-+.+++++.++++++.. .
T Consensus 102 l~~e~i~~r~~~~~~~~~~rvG~~~~AD~IaL~~~s~--dp~~v~~~Vk~V~~~~dvP--LSIDT~dpevleaAleagad 177 (450)
T PRK04165 102 MDDEEIDARLKKINNFQFERVGEILKLDMVALRNASG--DPEKFAKAVKKVAETTDLP--LILCSEDPAVLKAALEVVAD 177 (450)
T ss_pred CChHHHHHHHHHhhcchHhhhcccccCCEEEEeCCCC--CHHHHHHHHHHHHHhcCCC--EEEeCCCHHHHHHHHHhcCC
Confidence 3445555555544 12334 23478888887655 334556666666653 443 677789999999988763 1
Q ss_pred --ceEEeeecccccccccccHHHHHHHhCCeEEeccc
Q 024050 178 --ITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSP 212 (273)
Q Consensus 178 --~~~~q~~~~l~~~~~~~~l~~~~~~~gi~v~a~sp 212 (273)
+.+.-+. ..+. ..+.+.|+++|..+++.++
T Consensus 178 ~~plI~Sat----~dN~-~~m~~la~~yg~pvVv~~~ 209 (450)
T PRK04165 178 RKPLLYAAT----KENY-EEMAELAKEYNCPLVVKAP 209 (450)
T ss_pred CCceEEecC----cchH-HHHHHHHHHcCCcEEEEch
Confidence 2222211 1111 5677778888888877654
No 370
>PRK07094 biotin synthase; Provisional
Probab=23.22 E-value=5.1e+02 Score=22.64 Aligned_cols=115 Identities=17% Similarity=0.221 Sum_probs=60.7
Q ss_pred CCHHHHHHHHHHHHHCCCCccccc----cCCCCCcHHHHHHHHHhcCCC-CCEEEEeccCcCCCCCccccccCCHHHHHH
Q 024050 38 VSEEDGISMIKHAFSKGITFFDTA----DVYGQNANEVLLGKALKQLPR-EKIQVATKFGIAGIGVAGVIVKGAPDYVRS 112 (273)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gin~~DtA----~~Yg~g~se~~lg~~l~~~~r-~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~ 112 (273)
.+.++..+.++.+.+.|++.|--. +.|. ...+-+.++...+ .++.+..-.+. .+.+
T Consensus 70 ls~eei~~~~~~~~~~g~~~i~l~gG~~~~~~----~~~l~~l~~~i~~~~~l~i~~~~g~-----------~~~e---- 130 (323)
T PRK07094 70 LSPEEILECAKKAYELGYRTIVLQSGEDPYYT----DEKIADIIKEIKKELDVAITLSLGE-----------RSYE---- 130 (323)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCCCCCC----HHHHHHHHHHHHccCCceEEEecCC-----------CCHH----
Confidence 478889999999999999866332 2232 2334444443222 34433321111 1222
Q ss_pred HHHHHHHHcCCCcccEEEecCCC--------CCCCHHHHHHHHHHHHHcCCccE----EecCCCCHHHHHHHh
Q 024050 113 CCEASLKRLDVDYIDLYYQHRVD--------TSVPIEETIGEMKKLVEEGKIKY----IGLSEASPGTIRRAH 173 (273)
Q Consensus 113 ~~~~sL~~L~~d~iDl~~lh~~~--------~~~~~~~~~~~L~~l~~~G~ir~----iGvS~~~~~~l~~~~ 173 (273)
.+ +.|++.|++.+-+ -+...+ .....++.+++++.+++.|.--. +|+...+.+.+.+.+
T Consensus 131 ~l-~~Lk~aG~~~v~~-glEs~~~~~~~~i~~~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget~ed~~~~l 201 (323)
T PRK07094 131 EY-KAWKEAGADRYLL-RHETADKELYAKLHPGMSFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLADDI 201 (323)
T ss_pred HH-HHHHHcCCCEEEe-ccccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeecceEEEECCCCCHHHHHHHH
Confidence 22 3456677655441 122111 12346788899999999986211 355555665555443
No 371
>PRK00499 rnpA ribonuclease P; Reviewed
Probab=23.22 E-value=3.1e+02 Score=20.10 Aligned_cols=64 Identities=17% Similarity=0.155 Sum_probs=42.6
Q ss_pred CCCCCEEEEeccCcCCCCCccccccCCHHHHHHHHHHHHHHcCC---CcccEEEecCCCCC-CCHHHHHHHHHHHHHc
Q 024050 80 LPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDV---DYIDLYYQHRVDTS-VPIEETIGEMKKLVEE 153 (273)
Q Consensus 80 ~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~---d~iDl~~lh~~~~~-~~~~~~~~~L~~l~~~ 153 (273)
.+|=-+.|+-|++.. ..+..|++.+++.+..... ...|++++-.+... .+..+..+.|..|.+.
T Consensus 37 ~~R~GisVsKKvgkA----------V~RNriKR~lRE~~R~~~~~~~~~~d~v~i~r~~~~~~~~~~l~~~l~~ll~k 104 (114)
T PRK00499 37 HFRVGISVSKKVGNA----------VVRNRIKRLIRESFRELKDEIKKGYDFVVIARKPAAELDYKEIKKSLIHVLKL 104 (114)
T ss_pred CcEEEEEEecccCch----------hhHhHHHHHHHHHHHHhhhcccCCceEEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 345556677776642 3477788888888876642 46799999888654 4566677777666544
No 372
>PRK13870 transcriptional regulator TraR; Provisional
Probab=23.17 E-value=4.5e+02 Score=22.02 Aligned_cols=26 Identities=0% Similarity=-0.142 Sum_probs=20.7
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEe
Q 024050 106 APDYVRSCCEASLKRLDVDYIDLYYQ 131 (273)
Q Consensus 106 ~~~~i~~~~~~sL~~L~~d~iDl~~l 131 (273)
+-+.+...++...+++|.+++-+..+
T Consensus 17 ~~~~~~~~l~~~~~~~Gf~~~~y~~~ 42 (234)
T PRK13870 17 DECILKTGLADIADHFGFTGYAYLHI 42 (234)
T ss_pred CHHHHHHHHHHHHHHcCCCcEEEEec
Confidence 46788999999999999888755433
No 373
>PRK04820 rnpA ribonuclease P; Reviewed
Probab=23.11 E-value=3.2e+02 Score=21.24 Aligned_cols=57 Identities=14% Similarity=0.149 Sum_probs=38.8
Q ss_pred CCCCHHHHHHHHHHHHHCCCCccccccCCCCCcHHHHHHHHHhcCCCCCEEEEeccCcCCCCCccccccCCHHHHHHHHH
Q 024050 36 SPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCE 115 (273)
Q Consensus 36 ~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (273)
..+....++..++.++..-.. . .+..+++|..|-+... .+.+.+++++.
T Consensus 61 ~AV~RNRiKR~lRE~fR~~~~-------------------~---l~~~DiVviar~~~~~---------~~~~~l~~~l~ 109 (145)
T PRK04820 61 RAVGRNRIKRVLREAMRQLLP-------------------E---LAPGDYVVVARSAAAK---------ASNPQLRDAFL 109 (145)
T ss_pred cchhHHHHHHHHHHHHHHhhh-------------------c---cCCCCEEEEEeCCccc---------CCHHHHHHHHH
Confidence 456677788888888862211 1 1233777777755333 56889999999
Q ss_pred HHHHHcCC
Q 024050 116 ASLKRLDV 123 (273)
Q Consensus 116 ~sL~~L~~ 123 (273)
..|+++++
T Consensus 110 ~LL~k~~~ 117 (145)
T PRK04820 110 RLLRRAGA 117 (145)
T ss_pred HHHHHhCc
Confidence 99999874
No 374
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=23.07 E-value=5.7e+02 Score=23.20 Aligned_cols=111 Identities=22% Similarity=0.264 Sum_probs=59.4
Q ss_pred CCCHHHHHHHHH-------HHHHCCCCccccccCCCCCcHHHHHHHHHhc--CCCCCEEEEeccCcCCCCCccccccCCH
Q 024050 37 PVSEEDGISMIK-------HAFSKGITFFDTADVYGQNANEVLLGKALKQ--LPREKIQVATKFGIAGIGVAGVIVKGAP 107 (273)
Q Consensus 37 ~~~~~~~~~~l~-------~A~~~Gin~~DtA~~Yg~g~se~~lg~~l~~--~~r~~~~i~tK~~~~~~~~~~~~~~~~~ 107 (273)
.++.+|..++++ .|.++|+.-++.-..- --++-+||.. ..|.| +++... .-..
T Consensus 138 ~mt~~eI~~ii~~f~~AA~rA~~AGFDgVEIH~Ah-----GYLi~qFlsp~tN~RtD-----~YGGSl--------ENR~ 199 (363)
T COG1902 138 ELTEEEIEEVIEDFARAARRAKEAGFDGVEIHGAH-----GYLLSQFLSPLTNKRTD-----EYGGSL--------ENRA 199 (363)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeecc-----chHHHHhcCCccCCCCC-----ccCCcH--------HHHH
Confidence 467777766664 5667887655533222 2467777764 33444 111110 0112
Q ss_pred HHHHHHHHHHHHHcCCCcccEEEec--CC-CC-CCCHHHHHHHHHHHHHcCCccEEecCCCC
Q 024050 108 DYVRSCCEASLKRLDVDYIDLYYQH--RV-DT-SVPIEETIGEMKKLVEEGKIKYIGLSEAS 165 (273)
Q Consensus 108 ~~i~~~~~~sL~~L~~d~iDl~~lh--~~-~~-~~~~~~~~~~L~~l~~~G~ir~iGvS~~~ 165 (273)
....+-++...+..+-+.+=.+=|- .+ .. ....++..+.++.|.+.|.+.+|-+|...
T Consensus 200 Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~~~~~g~~~~e~~~la~~L~~~G~~d~i~vs~~~ 261 (363)
T COG1902 200 RFLLEVVDAVREAVGADFPVGVRLSPDDFFDGGGLTIEEAVELAKALEEAGLVDYIHVSEGG 261 (363)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECccccCCCCCCCHHHHHHHHHHHHhcCCccEEEeeccc
Confidence 3455666666777775541111111 11 11 13356777777888888877777777644
No 375
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=23.05 E-value=5.7e+02 Score=23.18 Aligned_cols=87 Identities=17% Similarity=0.093 Sum_probs=49.6
Q ss_pred cEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEecCCCCHHHHHHHhhc-CCceEEeeecccccccc-cccHHHHHHHhC
Q 024050 127 DLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAV-HPITAVQMEWSLWTRDI-EEEIIPLCRELG 204 (273)
Q Consensus 127 Dl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~-~~~~~~q~~~~l~~~~~-~~~l~~~~~~~g 204 (273)
|-+++-.|.. ...+..+..+...+-+.-.-+...+.+.+++++.. .++.++..+.|+.-.-. ..++.+.|+++|
T Consensus 92 D~Vl~~~~~y----~~~~~~~~~~~~~~gi~v~~vd~~d~e~l~~~l~~~tklV~l~sP~NPtG~v~di~~I~~ia~~~g 167 (386)
T PRK08045 92 DLLVAPHDCY----GGSYRLFDSLAKRGCYRVLFVDQGDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREAG 167 (386)
T ss_pred CEEEEcCCCc----HHHHHHHHHHHhhCCeEEEEeCCCCHHHHHHhcccCCeEEEEECCCCCCCEecCHHHHHHHHHHcC
Confidence 5555554432 33444455554444333333344567777776643 45566666666643322 267888999999
Q ss_pred CeEEecccCCCcc
Q 024050 205 IGIVPYSPLGRGF 217 (273)
Q Consensus 205 i~v~a~spl~~G~ 217 (273)
+-++.=..++.+.
T Consensus 168 ~~vivDeay~~~~ 180 (386)
T PRK08045 168 AVSVVDNTFLSPA 180 (386)
T ss_pred CEEEEECCCCccc
Confidence 8888655555443
No 376
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=22.95 E-value=5.4e+02 Score=22.87 Aligned_cols=133 Identities=12% Similarity=0.077 Sum_probs=71.3
Q ss_pred CHHHHHHHHHHHHHCCCCccc----------cccCCCCC--cHHHHHHHHHhcCC-CCCEEEEeccCcCCCCCccccccC
Q 024050 39 SEEDGISMIKHAFSKGITFFD----------TADVYGQN--ANEVLLGKALKQLP-REKIQVATKFGIAGIGVAGVIVKG 105 (273)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~D----------tA~~Yg~g--~se~~lg~~l~~~~-r~~~~i~tK~~~~~~~~~~~~~~~ 105 (273)
+.++..++.+.+.+.|+..|| +...||.. ..-+.+.+.++... .-++-|+.|+...... ..
T Consensus 75 ~p~~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g~~~------~~ 148 (333)
T PRK11815 75 DPADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGIDD------QD 148 (333)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEeeeCC------Cc
Confidence 678888888888999988887 34455521 12244445554421 1135577776322110 11
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEecCCCC-CCCH---------HHHHHHHHHHHHcC-CccEEecCC-CCHHHHHHHh
Q 024050 106 APDYVRSCCEASLKRLDVDYIDLYYQHRVDT-SVPI---------EETIGEMKKLVEEG-KIKYIGLSE-ASPGTIRRAH 173 (273)
Q Consensus 106 ~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~-~~~~---------~~~~~~L~~l~~~G-~ir~iGvS~-~~~~~l~~~~ 173 (273)
+... ...+-+.++..| +|.+.+|..+. .... ...|+.+.++++.- .|--||.-. .+++.+++++
T Consensus 149 t~~~-~~~~~~~l~~aG---~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~nGgI~s~eda~~~l 224 (333)
T PRK11815 149 SYEF-LCDFVDTVAEAG---CDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGIKTLEEAKEHL 224 (333)
T ss_pred CHHH-HHHHHHHHHHhC---CCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHH
Confidence 1122 123344456666 57778885432 0000 01366677777663 566666655 4667777766
Q ss_pred hcCCceEEee
Q 024050 174 AVHPITAVQM 183 (273)
Q Consensus 174 ~~~~~~~~q~ 183 (273)
+. .+.+++
T Consensus 225 ~~--aDgVmI 232 (333)
T PRK11815 225 QH--VDGVMI 232 (333)
T ss_pred hc--CCEEEE
Confidence 53 444444
No 377
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=22.78 E-value=5.5e+02 Score=22.92 Aligned_cols=151 Identities=7% Similarity=0.023 Sum_probs=85.6
Q ss_pred CHHHHHHHHHHHHHCCCCccccccCCCCC-cHHHHHHHHHhcCCCCCEEEEeccCcCCCCCccccccCCHHHHHHHHHHH
Q 024050 39 SEEDGISMIKHAFSKGITFFDTADVYGQN-ANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEAS 117 (273)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g-~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~s 117 (273)
+.++..+....+.+.|++.|=.-- |.. ......=+++++.-.+++-|.-=... .++.+...+-+ +.
T Consensus 138 ~~e~~~~~a~~~~~~Gf~~~Kikv--g~~~~~d~~~v~~vRe~~G~~~~l~vDaN~----------~~~~~~A~~~~-~~ 204 (352)
T cd03328 138 DDDRLREQLSGWVAQGIPRVKMKI--GRDPRRDPDRVAAARRAIGPDAELFVDANG----------AYSRKQALALA-RA 204 (352)
T ss_pred CHHHHHHHHHHHHHCCCCEEEeec--CCCHHHHHHHHHHHHHHcCCCCeEEEECCC----------CCCHHHHHHHH-HH
Confidence 456666777777889998654321 111 11222233444422223333322111 13344322222 23
Q ss_pred HHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHc--CCcc-EEecCCCCHHHHHHHhhcCCceEEeeecccccccc-c
Q 024050 118 LKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEE--GKIK-YIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRDI-E 193 (273)
Q Consensus 118 L~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~--G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~~l~~~~~-~ 193 (273)
|+. +++.++..|-. .+-++.+.+|+++ -.|- ..|=|.++...+.++++..-.+++|+...-.---. -
T Consensus 205 l~~-----~~~~~~EeP~~----~~d~~~~~~l~~~~~~~iPIa~gE~~~~~~~~~~li~~~a~div~~d~~~~GGit~~ 275 (352)
T cd03328 205 FAD-----EGVTWFEEPVS----SDDLAGLRLVRERGPAGMDIAAGEYAYTLAYFRRLLEAHAVDVLQADVTRCGGVTGF 275 (352)
T ss_pred HHH-----hCcchhhCCCC----hhhHHHHHHHHhhCCCCCCEEecccccCHHHHHHHHHcCCCCEEecCccccCCHHHH
Confidence 333 34555555432 2346778888876 3222 34556688899999999888899998777643211 1
Q ss_pred ccHHHHHHHhCCeEEecc
Q 024050 194 EEIIPLCRELGIGIVPYS 211 (273)
Q Consensus 194 ~~l~~~~~~~gi~v~a~s 211 (273)
..+.+.|+.+|+.++.+.
T Consensus 276 ~~ia~~A~a~gi~~~~h~ 293 (352)
T cd03328 276 LQAAALAAAHHVDLSAHC 293 (352)
T ss_pred HHHHHHHHHcCCeeccCc
Confidence 679999999999999764
No 378
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=22.73 E-value=5.9e+02 Score=23.20 Aligned_cols=89 Identities=11% Similarity=0.051 Sum_probs=52.2
Q ss_pred ccEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEecCCCCHHHHHHHhh-cCCceEEeeecccccccc-cccHHHHHHHh
Q 024050 126 IDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHA-VHPITAVQMEWSLWTRDI-EEEIIPLCREL 203 (273)
Q Consensus 126 iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~-~~~~~~~q~~~~l~~~~~-~~~l~~~~~~~ 203 (273)
=|-+++..+. .......+..+...+.++-.-+...+.+.+++++. ..+..++..+-|+.-.-. ...+.+.|+++
T Consensus 92 Gd~Il~~~~~----y~~~~~~~~~~~~~~gi~v~~vd~~d~e~l~~~i~~~tklV~lesP~NPtG~v~dl~~I~~la~~~ 167 (388)
T PRK08861 92 DDLIVAPHDC----YGGTYRLFNTRANKGDFKVQFVDQSDAAALDAALAKKPKLILLETPSNPLVRVVDIAELCQKAKAV 167 (388)
T ss_pred CCEEEEcCCc----hHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCcccCHHHHHHHHHHc
Confidence 3556654432 23344444444444434444444556777777664 355666666666644322 26789999999
Q ss_pred CCeEEecccCCCccC
Q 024050 204 GIGIVPYSPLGRGFF 218 (273)
Q Consensus 204 gi~v~a~spl~~G~L 218 (273)
|+-++.=..++.|.+
T Consensus 168 gi~vIvDea~~~~~~ 182 (388)
T PRK08861 168 GALVAVDNTFLTPVL 182 (388)
T ss_pred CCEEEEECCcccccc
Confidence 998886666655543
No 379
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=22.69 E-value=5.4e+02 Score=22.77 Aligned_cols=173 Identities=10% Similarity=0.032 Sum_probs=95.2
Q ss_pred CHHHHHHHHHHHHHCCCCccccccCCCC-------Cc---HHH------HHHHHHhc--CCCCCEEEEeccCcCCCCCcc
Q 024050 39 SEEDGISMIKHAFSKGITFFDTADVYGQ-------NA---NEV------LLGKALKQ--LPREKIQVATKFGIAGIGVAG 100 (273)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~-------g~---se~------~lg~~l~~--~~r~~~~i~tK~~~~~~~~~~ 100 (273)
.++...++=+..+++|-..|.|=.+-+. +. ... .|.+...+ ..+.+.||.--+++..... .
T Consensus 51 ~Pd~I~~IH~aY~eAGADiIeTNTFgat~i~lady~led~v~~in~~aa~iAR~aA~~~~~~k~rfVaGsiGPt~k~~-~ 129 (311)
T COG0646 51 KPDVIEAIHRAYIEAGADIIETNTFGATTIKLADYGLEDKVYEINQKAARIARRAADEAGDPKPRFVAGSIGPTNKTL-S 129 (311)
T ss_pred CcHHHHHHHHHHHhccCcEEEecCCCcchhhHhhhChHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEeccCcCCcC-C
Confidence 3455566666677999999988653220 10 111 12222221 1124677777777766311 1
Q ss_pred ccc--cCCHHHHHHHHHHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCcc----------EEec--CCCCH
Q 024050 101 VIV--KGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK----------YIGL--SEASP 166 (273)
Q Consensus 101 ~~~--~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir----------~iGv--S~~~~ 166 (273)
..+ ..+.+.++++.+++.+-|=-.-+|++++.-..+......++.+.++..++.-++ --|. +.-++
T Consensus 130 ~~~~~~v~fd~l~~ay~eq~~~Li~gG~D~iLiET~~D~l~~KaA~~a~~~~~~~~~~~LPv~~s~Ti~~sG~tl~Gq~~ 209 (311)
T COG0646 130 ISPDFAVTFDELVEAYREQVEGLIDGGADLILIETIFDTLNAKAAVFAAREVFEELGVRLPVMISGTITDSGRTLSGQTI 209 (311)
T ss_pred cCCcccccHHHHHHHHHHHHHHHHhCCCcEEEEehhccHHHHHHHHHHHHHHHHhcCCcccEEEEEEEecCceecCCCcH
Confidence 122 577899999999999999778899999987765555566666666666533322 1111 12233
Q ss_pred HHHHHHhhcCCceEEeeecccccccccccHHHHHHHh-CCeEEecccCC
Q 024050 167 GTIRRAHAVHPITAVQMEWSLWTRDIEEEIIPLCREL-GIGIVPYSPLG 214 (273)
Q Consensus 167 ~~l~~~~~~~~~~~~q~~~~l~~~~~~~~l~~~~~~~-gi~v~a~spl~ 214 (273)
+.+...++...++.+=+++.+--... .+.++...++ +.-|.+| |-+
T Consensus 210 ~a~~~~l~~~~~~~vGlNCa~Gp~~m-~~~l~~ls~~~~~~vs~~-PNA 256 (311)
T COG0646 210 EAFLNSLEHLGPDAVGLNCALGPDEM-RPHLRELSRIADAFVSVY-PNA 256 (311)
T ss_pred HHHHHHhhccCCcEEeeccccCHHHH-HHHHHHHHhccCceEEEe-CCC
Confidence 33333334445666655555533211 3344444444 4444444 776
No 380
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=22.68 E-value=4.5e+02 Score=21.81 Aligned_cols=52 Identities=17% Similarity=0.204 Sum_probs=36.8
Q ss_pred CHHHHHHHHHHHHHCCCCccccccCCCCCcHHHHHHHHHhcCCCCCEEEEeccC
Q 024050 39 SEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFG 92 (273)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~se~~lg~~l~~~~r~~~~i~tK~~ 92 (273)
+.+++.++.+..++.|++.+...-... ...+.+.+.-++.++--+-.-|++.
T Consensus 25 ~~~~a~~i~~al~~~Gi~~iEitl~~~--~~~~~I~~l~~~~p~~~IGAGTVl~ 76 (212)
T PRK05718 25 KLEDAVPLAKALVAGGLPVLEVTLRTP--AALEAIRLIAKEVPEALIGAGTVLN 76 (212)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCc--cHHHHHHHHHHHCCCCEEEEeeccC
Confidence 789999999999999999999885443 4566665444435543344566654
No 381
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=22.61 E-value=2.5e+02 Score=24.42 Aligned_cols=49 Identities=16% Similarity=0.079 Sum_probs=39.7
Q ss_pred cccEEEecCCCCCCC---HHHHHHHHHHHHHcCCccEEecCCCCHHHHHHHhh
Q 024050 125 YIDLYYQHRVDTSVP---IEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHA 174 (273)
Q Consensus 125 ~iDl~~lh~~~~~~~---~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~ 174 (273)
..++++|.-|....+ ..++++.|.++.++|. +.|=+|+|..+.++.+.+
T Consensus 154 ~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~-~tvlissH~l~e~~~~~d 205 (293)
T COG1131 154 DPELLILDEPTSGLDPESRREIWELLRELAKEGG-VTILLSTHILEEAEELCD 205 (293)
T ss_pred CCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCC-cEEEEeCCcHHHHHHhCC
Confidence 458888888876655 3578999999999997 578899999988888744
No 382
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=22.57 E-value=1.1e+02 Score=16.99 Aligned_cols=17 Identities=29% Similarity=0.569 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHCCCC
Q 024050 40 EEDGISMIKHAFSKGIT 56 (273)
Q Consensus 40 ~~~~~~~l~~A~~~Gin 56 (273)
+++-..++..|.+.|++
T Consensus 2 D~EW~~Li~eA~~~Gls 18 (30)
T PF08671_consen 2 DEEWVELIKEAKESGLS 18 (30)
T ss_dssp -HHHHHHHHHHHHTT--
T ss_pred CHHHHHHHHHHHHcCCC
Confidence 35678899999999986
No 383
>COG2040 MHT1 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism]
Probab=22.56 E-value=5.4e+02 Score=22.67 Aligned_cols=168 Identities=16% Similarity=0.132 Sum_probs=95.9
Q ss_pred CHHHHHHHHHHHHHCCCCccccccCCC---CCcHHH----HHHHH----------Hhc-CCCCCEEEEeccCcCCCCCc-
Q 024050 39 SEEDGISMIKHAFSKGITFFDTADVYG---QNANEV----LLGKA----------LKQ-LPREKIQVATKFGIAGIGVA- 99 (273)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg---~g~se~----~lg~~----------l~~-~~r~~~~i~tK~~~~~~~~~- 99 (273)
.++-.+++-...+++|-+.++|+. |. .|-+|+ .+.+. .++ .-.+...|.--+++....-+
T Consensus 41 ~peiv~~vh~df~~aGa~ii~T~T-Yqa~~~~~~e~~~~~~~~~l~~~sv~la~~ard~~g~~~~~iagsiGP~ga~~a~ 119 (300)
T COG2040 41 EPEIVRNVHADFLRAGADIITTAT-YQATPEGFAERVSEDEAKQLIRRSVELARAARDAYGEENQNIAGSLGPYGAALAD 119 (300)
T ss_pred CHHHHHHHHHHHHHhcCcEEeehh-hhcCHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhcccccccceeccchhhhcCh
Confidence 466777888888899999998874 54 122332 11111 111 22333344555554431101
Q ss_pred --cccccCCHHHHHHHHHHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEecCCCC------HHHHHH
Q 024050 100 --GVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEAS------PGTIRR 171 (273)
Q Consensus 100 --~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~------~~~l~~ 171 (273)
......+.+.+.+-.+.-++.|.-.-+|++.+.........+.+.+++++. +|=-.|++|-.+ -..|.+
T Consensus 120 Ey~g~Y~~~~d~~~~fh~~rie~l~~ag~Dlla~ETip~i~Ea~Aiv~l~~~~---s~p~wISfT~~d~~~lr~Gt~l~e 196 (300)
T COG2040 120 EYRGDYGASQDALYKFHRPRIEALNEAGADLLACETLPNITEAEAIVQLVQEF---SKPAWISFTLNDDTRLRDGTPLSE 196 (300)
T ss_pred hhcCccCccHHHHHHHHHHHHHHHHhCCCcEEeecccCChHHHHHHHHHHHHh---CCceEEEEEeCCCCccCCCccHHH
Confidence 111233556566666777777777779999998775544455566666666 888888988542 122444
Q ss_pred Hhhc----CCceEEeeecccccccccccHHHHH--HHhCCeEEecccC
Q 024050 172 AHAV----HPITAVQMEWSLWTRDIEEEIIPLC--RELGIGIVPYSPL 213 (273)
Q Consensus 172 ~~~~----~~~~~~q~~~~l~~~~~~~~l~~~~--~~~gi~v~a~spl 213 (273)
+... ..+..+-+++.-.+.- ..+++.. +..++++++| |-
T Consensus 197 aa~~~~~~~~iaa~gvNC~~p~~~--~a~i~~l~~~~~~~piivY-PN 241 (300)
T COG2040 197 AAAILAGLPNIAALGVNCCHPDHI--PAAIEELSKLLTGKPIIVY-PN 241 (300)
T ss_pred HHHHHhcCcchhheeeccCChhhh--HHHHHHHHhcCCCCceEEc-CC
Confidence 3332 2444445444444332 5566766 3458999998 44
No 384
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=22.54 E-value=5.1e+02 Score=22.37 Aligned_cols=120 Identities=13% Similarity=0.134 Sum_probs=66.7
Q ss_pred CCCHHHHHHHHHHHHHCCCCccccccCCC--CCcHHHHHHHHHhcCCCCCEEEEeccCcCCCCCccccccCCHHHHHHHH
Q 024050 37 PVSEEDGISMIKHAFSKGITFFDTADVYG--QNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCC 114 (273)
Q Consensus 37 ~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg--~g~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~ 114 (273)
.++.++..++++.+.+.|+..|.-+..-. +..-..++.. +++..-.++.|+|-.. .+. ..
T Consensus 39 ~ls~eei~~~i~~~~~~gi~~I~~tGGEPll~~~l~~iv~~-l~~~g~~~v~i~TNG~----------------ll~-~~ 100 (302)
T TIGR02668 39 ELSPEEIERIVRVASEFGVRKVKITGGEPLLRKDLIEIIRR-IKDYGIKDVSMTTNGI----------------LLE-KL 100 (302)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEECcccccccCHHHHHHH-HHhCCCceEEEEcCch----------------HHH-HH
Confidence 46889999999999999987765432100 1112233332 2322223566666421 111 23
Q ss_pred HHHHHHcCCCcccEEEecCCCCC--------CCHHHHHHHHHHHHHcCCc----cEEecCCCCHHHHHHHhhc
Q 024050 115 EASLKRLDVDYIDLYYQHRVDTS--------VPIEETIGEMKKLVEEGKI----KYIGLSEASPGTIRRAHAV 175 (273)
Q Consensus 115 ~~sL~~L~~d~iDl~~lh~~~~~--------~~~~~~~~~L~~l~~~G~i----r~iGvS~~~~~~l~~~~~~ 175 (273)
-..|.+.|++.|- +.++.+++. ...+.+++.++.+++.|.. ..+.+.+.+.+.+.++++.
T Consensus 101 ~~~l~~~g~~~v~-iSld~~~~~~~~~i~~~~~~~~vl~~i~~~~~~G~~~v~i~~v~~~g~n~~ei~~~~~~ 172 (302)
T TIGR02668 101 AKKLKEAGLDRVN-VSLDTLDPEKYKKITGRGALDRVIEGIESAVDAGLTPVKLNMVVLKGINDNEIPDMVEF 172 (302)
T ss_pred HHHHHHCCCCEEE-EEecCCCHHHhhhccCCCcHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHHHH
Confidence 3346666766553 344554321 2467889999999999852 2344444666666665543
No 385
>PF10171 DUF2366: Uncharacterised conserved protein (DUF2366); InterPro: IPR019322 This is a set of proteins conserved from nematodes to humans. The function is not known.
Probab=22.54 E-value=1.8e+02 Score=23.45 Aligned_cols=37 Identities=16% Similarity=0.378 Sum_probs=27.4
Q ss_pred ccEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEecC
Q 024050 126 IDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS 162 (273)
Q Consensus 126 iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS 162 (273)
-++++++.......-.+-++.|.++..+|++|++-+-
T Consensus 78 n~l~lv~~~~rNp~S~~hvq~l~~l~nqg~Lr~~nLG 114 (173)
T PF10171_consen 78 NDLLLVSPAIRNPTSDKHVQRLMRLRNQGRLRYLNLG 114 (173)
T ss_pred CceeccChhhcCchHHHHHHHHHHHhcCCceEEeeee
Confidence 4667776554434456788999999999999998544
No 386
>PRK13753 dihydropteroate synthase; Provisional
Probab=22.47 E-value=5.2e+02 Score=22.53 Aligned_cols=102 Identities=15% Similarity=0.085 Sum_probs=65.1
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEe-cCCCCC-CCHH----HHHHHHHHHHHcCCccEEecCCCCHHHHHHHhhcCCc
Q 024050 105 GAPDYVRSCCEASLKRLDVDYIDLYYQ-HRVDTS-VPIE----ETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHPI 178 (273)
Q Consensus 105 ~~~~~i~~~~~~sL~~L~~d~iDl~~l-h~~~~~-~~~~----~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~ 178 (273)
.+.+.+.+..++.+ .-|.|-||+--- .+|... .+.+ .+...++.+++.+. -|.|-++.++.++++++..--
T Consensus 22 ~~~d~a~~~a~~m~-~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~~~--~ISIDT~~~~va~~al~aGad 98 (279)
T PRK13753 22 LDPAGAVTAAIEML-RVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQMH--RVSIDSFQPETQRYALKRGVG 98 (279)
T ss_pred CCHHHHHHHHHHHH-HCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhCCC--cEEEECCCHHHHHHHHHcCCC
Confidence 35566666666644 456777777553 345432 2222 23467777777653 489999999999999987422
Q ss_pred eEEeeecccccccccccHHHHHHHhCCeEEecccCC
Q 024050 179 TAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLG 214 (273)
Q Consensus 179 ~~~q~~~~l~~~~~~~~l~~~~~~~gi~v~a~spl~ 214 (273)
.++ ..+-+. ...+.+.+.+.+++++.+...+
T Consensus 99 iIN--DVsg~~---d~~~~~vva~~~~~vVlmH~~~ 129 (279)
T PRK13753 99 YLN--DIQGFP---DPALYPDIAEADCRLVVMHSAQ 129 (279)
T ss_pred EEE--eCCCCC---chHHHHHHHHcCCCEEEEecCC
Confidence 222 223332 2568889999999999877654
No 387
>COG1678 Putative transcriptional regulator [Transcription]
Probab=22.46 E-value=59 Score=26.64 Aligned_cols=59 Identities=17% Similarity=0.181 Sum_probs=44.5
Q ss_pred CCccEEecCCCCHHHHHHHhhcCC-ceEEeeecccccccccccHHHHHHHhCCeEEeccc
Q 024050 154 GKIKYIGLSEASPGTIRRAHAVHP-ITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSP 212 (273)
Q Consensus 154 G~ir~iGvS~~~~~~l~~~~~~~~-~~~~q~~~~l~~~~~~~~l~~~~~~~gi~v~a~sp 212 (273)
+..-++|.|.|.+-||++-+.... +++-..+-=+++...++.+-+..++.||.....++
T Consensus 130 ~~l~~lGYagW~~GQLE~Ei~~n~WL~~pA~~~~lF~~~~edrw~~al~~lGi~~~~lst 189 (194)
T COG1678 130 KALVALGYAGWAAGQLEEEIEDNDWLTVPADPEILFDTPPEDRWARALRRLGIDLALLST 189 (194)
T ss_pred ceEEEEEecccccchhHHHHhhCCEEEecCCHHHhcCCCHHHHHHHHHHHcCCCHHHcCC
Confidence 356688999999999998776643 44445555567777777888888999998877776
No 388
>PRK11024 colicin uptake protein TolR; Provisional
Probab=22.45 E-value=2e+02 Score=22.00 Aligned_cols=52 Identities=21% Similarity=0.258 Sum_probs=33.8
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEecC
Q 024050 106 APDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS 162 (273)
Q Consensus 106 ~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS 162 (273)
+.+.+...+++.++. .-|...+=..|.+.+.+.+.+.|+.+++.|. ..+++.
T Consensus 86 ~~~~L~~~l~~~~~~----~~~~~V~i~aD~~~~~~~vv~vmd~~k~aG~-~~v~l~ 137 (141)
T PRK11024 86 PEEQVVAEAKSRFKA----NPKTVFLIGGAKDVPYDEIIKALNLLHSAGV-KSVGLM 137 (141)
T ss_pred CHHHHHHHHHHHHhh----CCCceEEEEcCCCCCHHHHHHHHHHHHHcCC-CeEEEE
Confidence 445555555554442 2344444456677889999999999999995 446654
No 389
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=22.31 E-value=90 Score=26.97 Aligned_cols=52 Identities=15% Similarity=0.083 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEecCCCCH
Q 024050 108 DYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASP 166 (273)
Q Consensus 108 ~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~ 166 (273)
+-+.+-.++.|-+.+ |..=+.=+..- .|....-..|++|++.|- -||.||+.
T Consensus 66 ~iv~em~~eiLp~v~-~tPViaGv~at---DP~~~~~~fl~~lk~~Gf---~GV~NfPT 117 (268)
T PF09370_consen 66 EIVMEMAREILPVVK-DTPVIAGVCAT---DPFRDMDRFLDELKELGF---SGVQNFPT 117 (268)
T ss_dssp HHHHHHHHHHGGG-S-SS-EEEEE-TT----TT--HHHHHHHHHHHT----SEEEE-S-
T ss_pred HHHHHHHHhhhhhcc-CCCEEEEecCc---CCCCcHHHHHHHHHHhCC---ceEEECCc
Confidence 344555577777766 23333333333 345567778889999886 68999863
No 390
>PHA02820 phospholipase-D-like protein; Provisional
Probab=22.29 E-value=6.3e+02 Score=23.41 Aligned_cols=77 Identities=13% Similarity=0.050 Sum_probs=42.3
Q ss_pred HHHHHHHHhcCCCCCEEEEeccCcCCCCCccccccCCH-----HHHHHHHHHHHHHcCCCcccEEEecCCCCCCCHHHHH
Q 024050 70 EVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAP-----DYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETI 144 (273)
Q Consensus 70 e~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~-----~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~ 144 (273)
+..+-.++. .-++.|+|+|=...... ...+. ..|.+++.+.-.+=|+ .|-++.-+|++........+
T Consensus 220 ~~~~l~~I~-~Ak~~I~I~tpyfvP~~------~~~~~~~~yw~~i~~AL~~AA~~RGV-~VriLvp~~~d~~~~~~a~~ 291 (424)
T PHA02820 220 LTALLSCIR-NASKFVYVSVMNFIPII------YSKAGKILFWPYIEDELRRAAIDRKV-SVKLLISCWQRSSFIMRNFL 291 (424)
T ss_pred HHHHHHHHH-HHhhEEEEEEcccccee------eccCCcccchHHHHHHHHHHHHhCCC-EEEEEEeccCCCCccHHHHH
Confidence 345555565 45778888885432220 00111 3466666542223343 34455556666655556677
Q ss_pred HHHHHHHHcC
Q 024050 145 GEMKKLVEEG 154 (273)
Q Consensus 145 ~~L~~l~~~G 154 (273)
..|.+|.+.|
T Consensus 292 ~~l~~L~~~g 301 (424)
T PHA02820 292 RSIAMLKSKN 301 (424)
T ss_pred HHHHHHhccC
Confidence 8888888777
No 391
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=22.26 E-value=4e+02 Score=21.62 Aligned_cols=70 Identities=23% Similarity=0.260 Sum_probs=44.7
Q ss_pred CHHHHHHHHHHHHHCCCCccccccCCC-CCc---HHHHHHHHHhcCCCCCEEEEeccCcCCCCCccccccCCHHHHHHHH
Q 024050 39 SEEDGISMIKHAFSKGITFFDTADVYG-QNA---NEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCC 114 (273)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg-~g~---se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~ 114 (273)
+.++...+.+.|.++|..|+=|+..|. .|. .-+.+.+.++ .+ +-.|..... -+.+...+-+
T Consensus 129 ~~~~i~~a~ria~e~GaD~IKTsTG~~~~~at~~~v~~~~~~~~--~~----v~ik~aGGi---------kt~~~~l~~~ 193 (203)
T cd00959 129 TDEEIIKACEIAIEAGADFIKTSTGFGPGGATVEDVKLMKEAVG--GR----VGVKAAGGI---------RTLEDALAMI 193 (203)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhC--CC----ceEEEeCCC---------CCHHHHHHHH
Confidence 578899999999999999999998776 222 2244444444 12 223322111 1466777777
Q ss_pred HHHHHHcCC
Q 024050 115 EASLKRLDV 123 (273)
Q Consensus 115 ~~sL~~L~~ 123 (273)
+.--.|+|+
T Consensus 194 ~~g~~riG~ 202 (203)
T cd00959 194 EAGATRIGT 202 (203)
T ss_pred HhChhhccC
Confidence 776777775
No 392
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=22.13 E-value=4.6e+02 Score=25.19 Aligned_cols=59 Identities=17% Similarity=0.179 Sum_probs=40.9
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEecCCCCHHHHHHH
Q 024050 106 APDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRA 172 (273)
Q Consensus 106 ~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~ 172 (273)
......+++.+.|+-||+++ |-. .-....++...+.+++|.++|++ | +|.++.+++++.
T Consensus 58 ~~~e~~~~I~~dL~WLGl~w-D~~----~~qSdr~~~y~~~a~~Li~~G~A-Y--~C~cs~eel~~~ 116 (523)
T PLN03233 58 EKAEFEESIIEDLGKIEIKP-DSV----SFTSDYFEPIRCYAIILIEEGLA-Y--MDDTPQEEMKKE 116 (523)
T ss_pred cchHHHHHHHHHHHHhCCCC-CCC----ccccccHHHHHHHHHHHHHcCCe-E--ecCCCHHHHHHH
Confidence 35567889999999999875 521 11224467788999999999995 2 455566666543
No 393
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=22.12 E-value=90 Score=22.20 Aligned_cols=39 Identities=13% Similarity=-0.004 Sum_probs=24.2
Q ss_pred CCCCCEEEEeccCcCCCCCccccccCCHHHHHHHHHHHHHHcCCCcccE
Q 024050 80 LPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDL 128 (273)
Q Consensus 80 ~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl 128 (273)
...++|+|.+|..+..+. +. .=..+.+.|+.+|++|..+
T Consensus 9 i~~~~Vvvf~kg~~~~~~------Cp----~C~~ak~lL~~~~i~~~~~ 47 (97)
T TIGR00365 9 IKENPVVLYMKGTPQFPQ------CG----FSARAVQILKACGVPFAYV 47 (97)
T ss_pred hccCCEEEEEccCCCCCC------Cc----hHHHHHHHHHHcCCCEEEE
Confidence 447899999995422210 00 1246777888899887654
No 394
>PRK13561 putative diguanylate cyclase; Provisional
Probab=22.06 E-value=4.7e+02 Score=25.44 Aligned_cols=69 Identities=14% Similarity=0.282 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHcCCccEEecCCCCH--HHHHHHhh--cCCceEEeeecccccc-----cccccHHHHHHHhCCeEEec
Q 024050 140 IEETIGEMKKLVEEGKIKYIGLSEASP--GTIRRAHA--VHPITAVQMEWSLWTR-----DIEEEIIPLCRELGIGIVPY 210 (273)
Q Consensus 140 ~~~~~~~L~~l~~~G~ir~iGvS~~~~--~~l~~~~~--~~~~~~~q~~~~l~~~-----~~~~~l~~~~~~~gi~v~a~ 210 (273)
.+...+.+++|++.|- .|++.+|.. ..+..+.. ..+++.+-+.-++... .....++..|+..|+.|+|-
T Consensus 533 ~~~~~~~~~~l~~~G~--~i~lddfG~g~ssl~~L~~l~~l~~d~lKiD~s~i~~i~~~~~~v~~i~~~a~~l~i~viAe 610 (651)
T PRK13561 533 PHAAVAILRPLRNAGV--RVALDDFGMGYAGLRQLQHMKSLPIDVLKIDKMFVDGLPEDDSMVAAIIMLAQSLNLQVIAE 610 (651)
T ss_pred HHHHHHHHHHHHHCCC--EEEEECCCCCcccHHHHhhcCCCCCcEEEECHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEe
Confidence 4567788999999998 677776643 23333332 2356666665444332 11267899999999999984
No 395
>PF00388 PI-PLC-X: Phosphatidylinositol-specific phospholipase C, X domain This entry is for the whole phospholipase C protein; InterPro: IPR000909 Phosphatidylinositol-specific phospholipase C (3.1.4.11 from EC), a eukaryotic intracellular enzyme, plays an important role in signal transduction processes []. It catalyzes the hydrolysis of 1-phosphatidyl-D-myo-inositol-3,4,5-triphosphate into the second messenger molecules diacylglycerol and inositol-1,4,5-triphosphate. This catalytic process is tightly regulated by reversible phosphorylation and binding of regulatory proteins [, , ]. In mammals, there are at least 6 different isoforms of PI-PLC, they differ in their domain structure, their regulation, and their tissue distribution. Lower eukaryotes also possess multiple isoforms of PI-PLC. All eukaryotic PI-PLCs contain two regions of homology, sometimes referred to as the 'X-box' and 'Y-box'. The order of these two regions is always the same (NH2-X-Y-COOH), but the spacing is variable. In most isoforms, the distance between these two regions is only 50-100 residues but in the gamma isoforms one PH domain, two SH2 domains, and one SH3 domain are inserted between the two PLC-specific domains. The two conserved regions have been shown to be important for the catalytic activity. By profile analysis, we could show that sequences with significant similarity to the X-box domain occur also in prokaryotic and trypanosome PI-specific phospholipases C. Apart from this region, the prokaryotic enzymes show no similarity to their eukaryotic counterparts.; GO: 0004629 phospholipase C activity, 0006629 lipid metabolic process, 0035556 intracellular signal transduction; PDB: 2FJU_B 2ZKM_X 3V18_A 3V1H_A 3V16_A 3QR1_D 3EA3_A 3EA1_A 2OR2_A 1T6M_B ....
Probab=22.05 E-value=54 Score=25.17 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=14.8
Q ss_pred HHHHHHHHCCCCccccccCCC
Q 024050 45 SMIKHAFSKGITFFDTADVYG 65 (273)
Q Consensus 45 ~~l~~A~~~Gin~~DtA~~Yg 65 (273)
..+...++.|+|+||.--.++
T Consensus 30 ~~i~~QL~~GiR~lDlrv~~~ 50 (146)
T PF00388_consen 30 WSIREQLESGIRYLDLRVWDG 50 (146)
T ss_dssp HHHHHHHHTT--EEEEEEEEE
T ss_pred HhHHHHHhccCceEEEEEEcC
Confidence 478889999999999765543
No 396
>PF09639 YjcQ: YjcQ protein; InterPro: IPR018597 YjcQ is a protein of approx. 100 residues containing four alpha helices and three beta strands. It is found in bacteria and also in the Lactococcus phage Tuc2009. In bacteria it appears to be under the regulation of SigD RNA polymerase which is responsible for the expression of many genes encoding cell-surface proteins related to flagellar assembly, motility, chemotaxis and autolysis in the late exponential growth phase. The exact function of YjcQ is unknown []. However, it is thought to be the major head protein in viruses [] and is found in prophage in bacteria. ; PDB: 2HGC_A.
Probab=22.04 E-value=67 Score=22.56 Aligned_cols=24 Identities=21% Similarity=0.178 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHcCCccEEecCCC
Q 024050 141 EETIGEMKKLVEEGKIKYIGLSEA 164 (273)
Q Consensus 141 ~~~~~~L~~l~~~G~ir~iGvS~~ 164 (273)
....++|..|+++|.|..+-+...
T Consensus 25 ~~~~~il~~L~d~GyI~G~~~~~~ 48 (88)
T PF09639_consen 25 SYWSDILRMLQDEGYIKGVSVVRY 48 (88)
T ss_dssp HHHHHHHHHHHHHTSEE--EESSS
T ss_pred HHHHHHHHHHHHCCCccceEEEec
Confidence 567799999999999988877765
No 397
>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=22.04 E-value=5.8e+02 Score=22.86 Aligned_cols=90 Identities=11% Similarity=0.071 Sum_probs=55.7
Q ss_pred EEEecCCCCC-----------CCHHHHHHHHHHHHHcCC---ccEEecC--CCCHHHHHHHhhc---CCceEEeeecccc
Q 024050 128 LYYQHRVDTS-----------VPIEETIGEMKKLVEEGK---IKYIGLS--EASPGTIRRAHAV---HPITAVQMEWSLW 188 (273)
Q Consensus 128 l~~lh~~~~~-----------~~~~~~~~~L~~l~~~G~---ir~iGvS--~~~~~~l~~~~~~---~~~~~~q~~~~l~ 188 (273)
.+.||.++++ .+++++++++.++.+.|+ ++++=+. |.+.+.++++.+. .+..++-++||..
T Consensus 207 aiSLhA~~~e~r~~I~p~~~~~~le~il~ai~~~~~~~rri~ieyvLI~GvNDseeda~~La~llk~l~~~vnlI~~N~~ 286 (336)
T PRK14470 207 CISLNAAIPWKRRALMPIEQGFPLDELVEAIREHAALRGRVTLEYVMISGVNVGEEDAAALGRLLAGIPVRLNPIAVNDA 286 (336)
T ss_pred EEecCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhCCCeEEEEEEEecccCCHHHHHHHHHHHhcCCCeEEEeccCCC
Confidence 3677987642 356788899988887654 2444333 3455555555443 4567888899985
Q ss_pred cccc----c---ccHHHHH--HHhCCeEEecccCCCcc
Q 024050 189 TRDI----E---EEIIPLC--RELGIGIVPYSPLGRGF 217 (273)
Q Consensus 189 ~~~~----~---~~l~~~~--~~~gi~v~a~spl~~G~ 217 (273)
.... + ....+.. +++|+.+......+.-+
T Consensus 287 ~~~~~~p~~~~i~~f~~~l~~~~~g~~~~~R~~~G~di 324 (336)
T PRK14470 287 TGRYRPPDEDEWNAFRDALARELPGTPVVRRYSGGQDE 324 (336)
T ss_pred CCCccCCCHHHHHHHHHHHHHccCCeEEEEECCCCCCh
Confidence 4321 1 3344445 35689998887776543
No 398
>PF03472 Autoind_bind: Autoinducer binding domain; InterPro: IPR005143 This domain binds N-acyl homoserine lactones (AHLs), which are also known as autoinducers. These are small, diffusible molecules used as communication signals in a large variety of proteobacteria. It is almost always found in association with the DNA-binding LuxR domain (IPR000792 from INTERPRO). The autoinducer binding domain forms the N-terminal region of the protein, while the DNA-binding domain forms the C-terminal region. In most cases, binding of AHL by this N-terminal domain leads to unmasking of the DNA-binding domain, allowing it to bind DNA and activate transcription []. In rare cases, some LuxR proteins such as EsaR, act as repressors []. In these proteins binding of AHL to this domain leads to inactivation of the protein as a transcriptional regulator. A large number of processes have been shown to be regulated by LuxR proteins, including bioluminescence, production of virulence factors in plant and animal pathogens, antibiotic production and plasmid transfer. Structural studies of TraR from Agrobacterium tumefaciens [, ] show that the functional protein is a homodimer. Binding of the cognate AHL is required for protein folding, resistance to proteases and dimerisation. The autoinducer binding domain binds its cognate AHL in an alpha/beta/alpha sandwich and provides an extensive dimerisation surface, though residues from the C-terminal region also make some contribution to dimerisation. The autoinducer binding domain is also required for interaction with RpoA, allowing transcription to occur []. There are some proteins which consist solely of the autoinducer binding domain. The function of these is not known, but TrlR from Agrobacterium has been shown to inhibit the activity of TraR by the formation of inactive heterodimers [].; PDB: 3SZT_A 1H0M_A 1L3L_B 2Q0O_B 2UV0_F 3IX8_A 3IX4_C 3IX3_A 3JPU_D 3QP8_A ....
Probab=21.90 E-value=3.2e+02 Score=20.15 Aligned_cols=24 Identities=21% Similarity=0.108 Sum_probs=20.6
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEE
Q 024050 106 APDYVRSCCEASLKRLDVDYIDLY 129 (273)
Q Consensus 106 ~~~~i~~~~~~sL~~L~~d~iDl~ 129 (273)
|.+.+.+.+.+.++++|.+++=+.
T Consensus 1 t~~~l~~~l~~~~~~~Gf~~~~~~ 24 (149)
T PF03472_consen 1 TEDELWDLLERLAARLGFDRFAYG 24 (149)
T ss_dssp SHHHHHHHHHHHHHCTTTSEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEE
Confidence 357789999999999998888777
No 399
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=21.82 E-value=1.5e+02 Score=22.61 Aligned_cols=27 Identities=19% Similarity=0.170 Sum_probs=21.9
Q ss_pred CHHHHHHHHHHHHHCCCCccccccCCC
Q 024050 39 SEEDGISMIKHAFSKGITFFDTADVYG 65 (273)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg 65 (273)
+.+++.++++.|+++|-.-.+-+..||
T Consensus 81 s~eevd~~v~ka~eaGGk~~~~~~d~g 107 (133)
T COG3607 81 SREEVDELVDKALEAGGKPANEPQDEG 107 (133)
T ss_pred cHHHHHHHHHHHHHcCCCCCCCccccc
Confidence 689999999999999987665555554
No 400
>TIGR00188 rnpA ribonuclease P protein component, eubacterial. The yeast mitochondrial RNase P protein component gene RPM2 has no obvious sequence similarity to rnpA, but resembles eukaryotic nuclear RNase P instead.
Probab=21.65 E-value=3.2e+02 Score=19.68 Aligned_cols=60 Identities=17% Similarity=0.197 Sum_probs=38.4
Q ss_pred CCCCEEEEeccCcCCCCCccccccCCHHHHHHHHHHHHHHcC--CCcccEEEecCCCCC-CCHHHHHHHHHHH
Q 024050 81 PREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLD--VDYIDLYYQHRVDTS-VPIEETIGEMKKL 150 (273)
Q Consensus 81 ~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~--~d~iDl~~lh~~~~~-~~~~~~~~~L~~l 150 (273)
+|=-+.|+-|++.. ..+..+++.+++...... +...|++++-.+... .+..+..+.|.+|
T Consensus 41 ~RlGi~vsKK~g~A----------V~RNriKR~lRe~~R~~~~~l~~~d~v~i~r~~~~~~~~~~l~~~l~~l 103 (105)
T TIGR00188 41 PRVGLSVSKKVKNA----------VERNRIKRLIREVFRERQELLKALDVVVIVRKGFSELTYEAFLKLLLQL 103 (105)
T ss_pred cEEEEEEecccCch----------hHHHHHHHHHHHHHHHhhcccCCccEEEEECCCcCcCCHHHHHHHHHHH
Confidence 34456666675532 346677777777776553 336898888888654 4566666666665
No 401
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=21.58 E-value=2.8e+02 Score=19.10 Aligned_cols=55 Identities=9% Similarity=-0.034 Sum_probs=33.4
Q ss_pred CcccEEEecCCCCCCCHHHHHHHHHHHHHcC-CccEEecCCC-CHHHHHHHhhcCCceEE
Q 024050 124 DYIDLYYQHRVDTSVPIEETIGEMKKLVEEG-KIKYIGLSEA-SPGTIRRAHAVHPITAV 181 (273)
Q Consensus 124 d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G-~ir~iGvS~~-~~~~l~~~~~~~~~~~~ 181 (273)
...|++++....+..... +.++++++.+ .++-|-+++. +.+...++++..-..++
T Consensus 42 ~~~d~iiid~~~~~~~~~---~~~~~i~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l 98 (112)
T PF00072_consen 42 HPPDLIIIDLELPDGDGL---ELLEQIRQINPSIPIIVVTDEDDSDEVQEALRAGADDYL 98 (112)
T ss_dssp STESEEEEESSSSSSBHH---HHHHHHHHHTTTSEEEEEESSTSHHHHHHHHHTTESEEE
T ss_pred cCceEEEEEeeecccccc---ccccccccccccccEEEecCCCCHHHHHHHHHCCCCEEE
Confidence 449999987655544444 4455555555 7777888764 45666666665433333
No 402
>PF09999 DUF2240: Uncharacterized protein conserved in archaea (DUF2240); InterPro: IPR018716 This family of various hypothetical archaeal proteins has no known function.
Probab=21.55 E-value=1e+02 Score=24.02 Aligned_cols=43 Identities=16% Similarity=0.352 Sum_probs=28.7
Q ss_pred cccCCCCCcccCcceeccccCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q 024050 10 RVKLGTQGLEVSKLGYGCMNLSGGYSSPVSEEDGISMIKHAFSKGIT 56 (273)
Q Consensus 10 ~r~lg~sg~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin 56 (273)
.++-|++.+.-|.+.+- .+|-..| +++++++++++.|.+.|+=
T Consensus 10 Fk~kg~~~L~~sefv~~-Ls~D~~W---mspdqAk~li~~A~~eGLl 52 (144)
T PF09999_consen 10 FKQKGKDRLSKSEFVFA-LSFDRKW---MSPDQAKRLIDEAIEEGLL 52 (144)
T ss_pred HHHcCccccChhheEee-EeeecCC---CCHHHHHHHHHHHHHCCCe
Confidence 34455666666666542 2333333 4899999999999999973
No 403
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=21.41 E-value=4.3e+02 Score=21.15 Aligned_cols=98 Identities=10% Similarity=0.060 Sum_probs=50.2
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCccE-EecCCCCHHHHHHHhhcCCceEEeee
Q 024050 106 APDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKY-IGLSEASPGTIRRAHAVHPITAVQME 184 (273)
Q Consensus 106 ~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~-iGvS~~~~~~l~~~~~~~~~~~~q~~ 184 (273)
++..+.+.++. +.+.|.|+|.+-....+... .....++.++++++...+.- +.+-.+++....+.......+.+|++
T Consensus 9 ~~~~~~~~~~~-~~~~g~d~i~~~~~Dg~~~~-~~~~~~~~v~~i~~~~~~~v~v~lm~~~~~~~~~~~~~~gadgv~vh 86 (210)
T TIGR01163 9 DFARLGEEVKA-VEEAGADWIHVDVMDGHFVP-NLTFGPPVLEALRKYTDLPIDVHLMVENPDRYIEDFAEAGADIITVH 86 (210)
T ss_pred CHHHHHHHHHH-HHHcCCCEEEEcCCCCCCCC-CcccCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEc
Confidence 44555555553 45778888777533322211 11234556666665432221 55665555544443334456677775
Q ss_pred cccccccccccHHHHHHHhCCeE
Q 024050 185 WSLWTRDIEEEIIPLCRELGIGI 207 (273)
Q Consensus 185 ~~l~~~~~~~~l~~~~~~~gi~v 207 (273)
....+. ....++.++++|+.+
T Consensus 87 ~~~~~~--~~~~~~~~~~~g~~~ 107 (210)
T TIGR01163 87 PEASEH--IHRLLQLIKDLGAKA 107 (210)
T ss_pred cCCchh--HHHHHHHHHHcCCcE
Confidence 543211 145566676666553
No 404
>PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function.
Probab=21.40 E-value=95 Score=22.17 Aligned_cols=50 Identities=22% Similarity=0.266 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEecC
Q 024050 110 VRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS 162 (273)
Q Consensus 110 i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS 162 (273)
..-.|-.-|.+.|.||.=.+.-.. ..+.+++.+.+++|.+.|+|..+.=+
T Consensus 8 l~~~IL~hl~~~~~Dy~k~ia~~l---~~~~~~v~~~l~~Le~~GLler~~g~ 57 (92)
T PF10007_consen 8 LDLKILQHLKKAGPDYAKSIARRL---KIPLEEVREALEKLEEMGLLERVEGK 57 (92)
T ss_pred hHHHHHHHHHHHCCCcHHHHHHHH---CCCHHHHHHHHHHHHHCCCeEEecCc
Confidence 344556667777777766554432 46789999999999999999988744
No 405
>KOG3086 consensus Predicted dioxygenase [General function prediction only]
Probab=21.32 E-value=2.1e+02 Score=24.54 Aligned_cols=29 Identities=28% Similarity=0.310 Sum_probs=19.9
Q ss_pred CcHHHHHHHHHhc---CCCCCEEEEeccCcCC
Q 024050 67 NANEVLLGKALKQ---LPREKIQVATKFGIAG 95 (273)
Q Consensus 67 g~se~~lg~~l~~---~~r~~~~i~tK~~~~~ 95 (273)
+..|...|+.|.+ -+++-++|++-+....
T Consensus 161 ~~~e~~~g~lls~Yi~Dp~NlFvvSSDFCHWG 192 (296)
T KOG3086|consen 161 PSVEQCYGKLLSKYIKDPSNLFVVSSDFCHWG 192 (296)
T ss_pred hHHHHHHHHHHHHHhcCccceEEEeccccccc
Confidence 4678888888876 4566666777776543
No 406
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=20.98 E-value=6.2e+02 Score=22.81 Aligned_cols=82 Identities=10% Similarity=0.042 Sum_probs=52.0
Q ss_pred CCHHHHHHHHHHHHHc-CC---ccEEecC--CCCHHHHHHHhhc---CCceEEeeecccccc-----ccc---ccHHHHH
Q 024050 138 VPIEETIGEMKKLVEE-GK---IKYIGLS--EASPGTIRRAHAV---HPITAVQMEWSLWTR-----DIE---EEIIPLC 200 (273)
Q Consensus 138 ~~~~~~~~~L~~l~~~-G~---ir~iGvS--~~~~~~l~~~~~~---~~~~~~q~~~~l~~~-----~~~---~~l~~~~ 200 (273)
.++++..+++.++.+. |+ +-|+=+. |.+++.++++.+. .+..++-++||.... ... ....+..
T Consensus 223 ~~l~el~~a~~~~~~~~grri~~EyvLl~GVNDs~e~a~~L~~~l~~~~~~vNLIPyN~v~g~~~~rp~~~~i~~f~~~L 302 (344)
T PRK14464 223 IAPEELVELGEAYARATGYPIQYQWTLLEGVNDSDEEMDGIVRLLKGKYAVMNLIPYNSVDGDAYRRPSGERIVAMARYL 302 (344)
T ss_pred CCHHHHHHHHHHHHHHHCCEEEEEEEEeCCCCCCHHHHHHHHHHHhccccccceecCCccCCCCccCCCHHHHHHHHHHH
Confidence 4577888888776543 42 2333222 5566666665553 456778888887543 111 4566777
Q ss_pred HHhCCeEEecccCCCccCC
Q 024050 201 RELGIGIVPYSPLGRGFFG 219 (273)
Q Consensus 201 ~~~gi~v~a~spl~~G~L~ 219 (273)
+++||.+......+.-+..
T Consensus 303 ~~~gi~~tiR~~~G~di~a 321 (344)
T PRK14464 303 HRRGVLTKVRNSAGQDVDG 321 (344)
T ss_pred HHCCceEEEECCCCCchhh
Confidence 8899999999888765433
No 407
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=20.96 E-value=2e+02 Score=25.01 Aligned_cols=81 Identities=25% Similarity=0.323 Sum_probs=50.1
Q ss_pred CcccEEEecCCCCC-CCHHHHHHHHHHHHHcCCccEEecCC---CCHHHHHHHhhc-----CCceEEeeecccccccccc
Q 024050 124 DYIDLYYQHRVDTS-VPIEETIGEMKKLVEEGKIKYIGLSE---ASPGTIRRAHAV-----HPITAVQMEWSLWTRDIEE 194 (273)
Q Consensus 124 d~iDl~~lh~~~~~-~~~~~~~~~L~~l~~~G~ir~iGvS~---~~~~~l~~~~~~-----~~~~~~q~~~~l~~~~~~~ 194 (273)
+..|+..+..|... -+. ++ .++..- ..|=|+. +....+++++++ .+..++-+.||+-+.
T Consensus 162 E~~~~~IIDsaaG~gCpV---i~---sl~~aD--~ai~VTEPTp~glhD~kr~~el~~~f~ip~~iViNr~~~g~s---- 229 (284)
T COG1149 162 ELADLLIIDSAAGTGCPV---IA---SLKGAD--LAILVTEPTPFGLHDLKRALELVEHFGIPTGIVINRYNLGDS---- 229 (284)
T ss_pred hhcceeEEecCCCCCChH---HH---hhccCC--EEEEEecCCccchhHHHHHHHHHHHhCCceEEEEecCCCCch----
Confidence 44789999887543 222 11 122222 2455554 233445555444 466778888855433
Q ss_pred cHHHHHHHhCCeEEecccCCCc
Q 024050 195 EIIPLCRELGIGIVPYSPLGRG 216 (273)
Q Consensus 195 ~l~~~~~~~gi~v~a~spl~~G 216 (273)
++.++|++.|+.+++.-|+..-
T Consensus 230 ~ie~~~~e~gi~il~~IPyd~~ 251 (284)
T COG1149 230 EIEEYCEEEGIPILGEIPYDKD 251 (284)
T ss_pred HHHHHHHHcCCCeeEECCcchh
Confidence 5889999999999999999744
No 408
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=20.93 E-value=2.2e+02 Score=24.27 Aligned_cols=65 Identities=11% Similarity=-0.086 Sum_probs=43.1
Q ss_pred HHHHcCCccEEec--CCCCHHHHHHHhhc-CCceEEeeecccccccccccHHHHHHHhCCeEEecccCC
Q 024050 149 KLVEEGKIKYIGL--SEASPGTIRRAHAV-HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLG 214 (273)
Q Consensus 149 ~l~~~G~ir~iGv--S~~~~~~l~~~~~~-~~~~~~q~~~~l~~~~~~~~l~~~~~~~gi~v~a~spl~ 214 (273)
+-.++|+. .+|+ +.-++...+.+... .++.++-.++++++...-..++..|+..|+..+++-|-.
T Consensus 5 ~~l~~g~~-~~G~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~~ 72 (249)
T TIGR03239 5 QDLLARET-LIGCWSALGNPITTEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPWN 72 (249)
T ss_pred HHHHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCCC
Confidence 33444664 3443 33445444443333 677788889999988655788889999999999887653
No 409
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=20.81 E-value=6.6e+02 Score=23.08 Aligned_cols=105 Identities=15% Similarity=0.090 Sum_probs=55.6
Q ss_pred HHHHHHHHHhc----CCCCCEEEEeccCcCCCCCccccccCCHHHHHHHHHHHHHHcC-CCcccEEEecCCCCCCC----
Q 024050 69 NEVLLGKALKQ----LPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLD-VDYIDLYYQHRVDTSVP---- 139 (273)
Q Consensus 69 se~~lg~~l~~----~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~-~d~iDl~~lh~~~~~~~---- 139 (273)
.|+.+-+++++ .+.+-++|.|-+.... --+.++.-+++.-++.- -..+.++.++.|+-...
T Consensus 65 g~~~L~~~i~~~~~~~~p~~I~v~~tC~~~l----------iGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~g~~~~G 134 (428)
T cd01965 65 GEDNLIEALKNLLSRYKPDVIGVLTTCLTET----------IGDDVAGFIKEFRAEGPEPADFPVVYASTPSFKGSHETG 134 (428)
T ss_pred cHHHHHHHHHHHHHhcCCCEEEEECCcchhh----------cCCCHHHHHHHHHhhccCCCCCeEEEeeCCCCCCcHHHH
Confidence 46666677766 3444566777654332 12234444444333221 01356777888765533
Q ss_pred HHHHHHHHHH-H------HHcCCccEEecCCC---CHHHHHHHhhcCCceEEee
Q 024050 140 IEETIGEMKK-L------VEEGKIKYIGLSEA---SPGTIRRAHAVHPITAVQM 183 (273)
Q Consensus 140 ~~~~~~~L~~-l------~~~G~ir~iGvS~~---~~~~l~~~~~~~~~~~~q~ 183 (273)
.+.++++|-+ + ++.++|.-||-++. +.+.|+++++...+.++.+
T Consensus 135 ~~~a~~al~~~~~~~~~~~~~~~VNlig~~~~~~~d~~el~~lL~~~Gl~v~~~ 188 (428)
T cd01965 135 YDNAVKAIIEQLAKPSEVKKNGKVNLLPGFPLTPGDVREIKRILEAFGLEPIIL 188 (428)
T ss_pred HHHHHHHHHHHHhcccCCCCCCeEEEECCCCCCccCHHHHHHHHHHcCCCEEEe
Confidence 2334444433 2 23456777876654 3577888887755555443
No 410
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=20.79 E-value=5e+02 Score=25.34 Aligned_cols=99 Identities=10% Similarity=0.021 Sum_probs=54.5
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEE-----EecCCCCCCCHHHHHHHHHHHHHcCC-cc---------EEecCCCCHHHH
Q 024050 105 GAPDYVRSCCEASLKRLDVDYIDLY-----YQHRVDTSVPIEETIGEMKKLVEEGK-IK---------YIGLSEASPGTI 169 (273)
Q Consensus 105 ~~~~~i~~~~~~sL~~L~~d~iDl~-----~lh~~~~~~~~~~~~~~L~~l~~~G~-ir---------~iGvS~~~~~~l 169 (273)
++.+... .+-+.|.++|++.|++. -.-.+-. -++-|+.|..+++... ++ -+|.++++-+.+
T Consensus 24 ~~~~d~l-~ia~~ld~~G~~siE~~GGatf~~~~~~~---~e~p~e~lr~l~~~~~~~~lqml~Rg~n~vg~~~ypddvv 99 (593)
T PRK14040 24 LRLDDML-PIAAKLDKVGYWSLESWGGATFDACIRFL---GEDPWERLRELKKAMPNTPQQMLLRGQNLLGYRHYADDVV 99 (593)
T ss_pred cCHHHHH-HHHHHHHHcCCCEEEecCCcchhhhcccc---CCCHHHHHHHHHHhCCCCeEEEEecCcceeccccCcHHHH
Confidence 4444443 46667888899998882 1101111 1233666666665433 33 378888776665
Q ss_pred HHHhhc---CCceEEeeecccccccccccHHHHHHHhCCeE
Q 024050 170 RRAHAV---HPITAVQMEWSLWTRDIEEEIIPLCRELGIGI 207 (273)
Q Consensus 170 ~~~~~~---~~~~~~q~~~~l~~~~~~~~l~~~~~~~gi~v 207 (273)
+..++. ..++++-+-..+-+-+.-...+++++++|..+
T Consensus 100 ~~~v~~a~~~Gid~~rifd~lnd~~~~~~ai~~ak~~G~~~ 140 (593)
T PRK14040 100 ERFVERAVKNGMDVFRVFDAMNDPRNLETALKAVRKVGAHA 140 (593)
T ss_pred HHHHHHHHhcCCCEEEEeeeCCcHHHHHHHHHHHHHcCCeE
Confidence 554433 23444444433333222266889999999864
No 411
>cd08561 GDPD_cytoplasmic_ScUgpQ2_like Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic phosphodiesterases UgpQ2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized cytoplasmic phosphodiesterases which predominantly exist in bacteria. The prototype of this family is a putative cytoplasmic phosphodiesterase encoded by gene ulpQ2 (SCO1419) in the Streptomyces coelicolor genome. It is distantly related to the Escherichia coli cytoplasmic phosphodiesterases UgpQ that catalyzes the hydrolysis of glycerophosphodiesters at the inner side of the cytoplasmic membrane to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=20.78 E-value=3.5e+02 Score=22.64 Aligned_cols=22 Identities=18% Similarity=0.329 Sum_probs=18.7
Q ss_pred CHHHHHHHHHHHHHCCCCcccc
Q 024050 39 SEEDGISMIKHAFSKGITFFDT 60 (273)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dt 60 (273)
-.|.....++.|++.|+.++++
T Consensus 11 ~pENT~~af~~A~~~g~d~vE~ 32 (249)
T cd08561 11 APENTLLAFEDAVELGADVLET 32 (249)
T ss_pred CCccHHHHHHHHHHhCCCEEEE
Confidence 4588899999999999997764
No 412
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=20.64 E-value=1.4e+02 Score=26.56 Aligned_cols=48 Identities=23% Similarity=0.199 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHcCC--CcccEEEecCCCCCCCHHHHHHHHHHHHHcCCcc
Q 024050 107 PDYVRSCCEASLKRLDV--DYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK 157 (273)
Q Consensus 107 ~~~i~~~~~~sL~~L~~--d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir 157 (273)
.+...+.+.+.+++||+ ++-..+.-+. ......+.+.+.+|.++|.|-
T Consensus 86 ~~~~~~~~~~~~~~lgi~~~~~~~~~T~~---~~~~~~v~~~f~~L~~~G~iY 135 (338)
T cd00818 86 ALRYVDEQEEQFQRLGVWVDWENPYKTMD---PEYMESVWWVFKQLHEKGLLY 135 (338)
T ss_pred HHHHHHHHHHHHHHhCceecCCCCeECCC---HHHHHHHHHHHHHHHHCCCEe
Confidence 34556788899999997 4443333322 233567889999999999975
No 413
>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=20.48 E-value=4.4e+02 Score=24.36 Aligned_cols=54 Identities=4% Similarity=-0.029 Sum_probs=35.9
Q ss_pred CCHHHHHHHhhc-CCceEEeeeccccccccc-ccHHHHHHHhCCeEEecccCCCcc
Q 024050 164 ASPGTIRRAHAV-HPITAVQMEWSLWTRDIE-EEIIPLCRELGIGIVPYSPLGRGF 217 (273)
Q Consensus 164 ~~~~~l~~~~~~-~~~~~~q~~~~l~~~~~~-~~l~~~~~~~gi~v~a~spl~~G~ 217 (273)
.+++.++++++. .+..++..+.|+.-.... .++.+.|+++|+.++.=..++.+.
T Consensus 131 ~d~e~le~ai~~~tklV~lesp~NPtG~v~dl~~I~~la~~~~i~vVvD~a~a~~~ 186 (425)
T PRK06084 131 DDIAALEALIDERTKAVFCESIGNPAGNIIDIQALADAAHRHGVPLIVDNTVATPV 186 (425)
T ss_pred CCHHHHHHHhccCCcEEEEeCCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcccc
Confidence 467778777653 455566666666554322 778899999999888666665443
No 414
>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family. This model represents the histidinol phosphate phosphatase HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyzes the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in E. coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; this family is designated subfamily rather than equivalog to indicate that members may not all act as HisJ.
Probab=20.47 E-value=5.2e+02 Score=21.76 Aligned_cols=82 Identities=11% Similarity=0.114 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHCCCCccccccCCC------CC-----cHHHHHHHHHhc------CCCCCE--EEEeccCcCCCCCcc
Q 024050 40 EEDGISMIKHAFSKGITFFDTADVYG------QN-----ANEVLLGKALKQ------LPREKI--QVATKFGIAGIGVAG 100 (273)
Q Consensus 40 ~~~~~~~l~~A~~~Gin~~DtA~~Yg------~g-----~se~~lg~~l~~------~~r~~~--~i~tK~~~~~~~~~~ 100 (273)
.....+++++|.+.|+..+=-+++.. .. .+..-+-+.++. ..++++ .+.--+...
T Consensus 14 ~~~~ee~v~~A~~~Gl~~i~~TdH~p~~~~~~~~~~~~~~~~~~~~~Y~~~i~~l~~~y~~~i~I~~GiE~~~~------ 87 (253)
T TIGR01856 14 TDTLEEVVQEAIQLGFEEICFTEHAPLPFEYPEETALDKMAFSSLPEYFKEINRLKKEYADKLKILIGLEVDYI------ 87 (253)
T ss_pred CCCHHHHHHHHHHcCCCEEEecCCCCcccCCCccccccchhHHHHHHHHHHHHHHHHHhhCCCeEEEEEEeccc------
Confidence 34578999999999998655554421 10 112223333322 223333 333322211
Q ss_pred ccccCCHHHHHHHHHHHHHHcCCCcccEEEecCCC
Q 024050 101 VIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVD 135 (273)
Q Consensus 101 ~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~ 135 (273)
+ .-.+.++..|++.+.||+ +..+|+..
T Consensus 88 ------~-~~~~~~~~~l~~~~~D~v-igSvH~~~ 114 (253)
T TIGR01856 88 ------P-GFEDFTKDFLDEYGLDFV-IGSVHFLG 114 (253)
T ss_pred ------c-chHHHHHHHHHHCCCCeE-EEEEEeec
Confidence 1 224557778888888888 88889875
No 415
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=20.42 E-value=3.4e+02 Score=21.69 Aligned_cols=23 Identities=17% Similarity=0.390 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHcCCccEEecCC
Q 024050 140 IEETIGEMKKLVEEGKIKYIGLSE 163 (273)
Q Consensus 140 ~~~~~~~L~~l~~~G~ir~iGvS~ 163 (273)
.+++-+.+++++++| |++|.||.
T Consensus 133 ~~~v~~~~~~l~~~g-v~avAV~~ 155 (176)
T PF05378_consen 133 EDEVREALRELKDKG-VEAVAVSL 155 (176)
T ss_pred HHHHHHHHHHHHhCC-CCEEEEEC
Confidence 455666667777666 77777765
No 416
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=20.41 E-value=2.8e+02 Score=23.95 Aligned_cols=66 Identities=15% Similarity=0.009 Sum_probs=43.5
Q ss_pred HHHHHHcCCccEEec--CCCCHHHHHHHhhc-CCceEEeeecccccccccccHHHHHHHhCCeEEecccC
Q 024050 147 MKKLVEEGKIKYIGL--SEASPGTIRRAHAV-HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPL 213 (273)
Q Consensus 147 L~~l~~~G~ir~iGv--S~~~~~~l~~~~~~-~~~~~~q~~~~l~~~~~~~~l~~~~~~~gi~v~a~spl 213 (273)
|.+..++|+.- +|+ ..-++...+-+... +++.++-.+++.++......++..++..|+..+++-|-
T Consensus 9 lk~~L~~G~~~-~G~~~~~~sp~~~E~~a~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp~ 77 (267)
T PRK10128 9 FKEGLRKGEVQ-IGLWLSSTTSYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPVE 77 (267)
T ss_pred HHHHHHcCCce-EEEEecCCCcHHHHHHHHcCCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECCC
Confidence 44444557653 443 33344444444333 56777788999998875577889999999988877664
No 417
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=20.36 E-value=5.2e+02 Score=23.44 Aligned_cols=53 Identities=9% Similarity=0.103 Sum_probs=34.8
Q ss_pred CHHHHHHHhhc-CCceEEeeeccccccccc-ccHHHHHHHhCCeEEecccCCCcc
Q 024050 165 SPGTIRRAHAV-HPITAVQMEWSLWTRDIE-EEIIPLCRELGIGIVPYSPLGRGF 217 (273)
Q Consensus 165 ~~~~l~~~~~~-~~~~~~q~~~~l~~~~~~-~~l~~~~~~~gi~v~a~spl~~G~ 217 (273)
+++.+++++.. .+..++..+.|+...... .++.+.|+++|+.++.=...+.+.
T Consensus 133 d~e~l~~~i~~~tklV~le~p~Np~G~v~dl~~I~~la~~~gi~livD~a~a~~~ 187 (391)
T TIGR01328 133 IPEEVKAHIKDNTKIVYFETPANPTMKLIDMERVCRDAHSQGVKVIVDNTFATPM 187 (391)
T ss_pred CHHHHHHhhccCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCchhc
Confidence 56777766543 456666667776544322 778999999999888655554443
No 418
>COG3215 PilZ Tfp pilus assembly protein PilZ [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=20.25 E-value=3.6e+02 Score=19.75 Aligned_cols=79 Identities=24% Similarity=0.037 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHCCCCccccccCCCCCcHHHHHHHHHhcCCCCCEEEEeccCcCCCCCccc---------cccCCHHHH
Q 024050 40 EEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGV---------IVKGAPDYV 110 (273)
Q Consensus 40 ~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~---------~~~~~~~~i 110 (273)
..-..+.---.+++|-=|+-|-..|.-| .|.++---|- -..+++++.+|+.|..|..... .....-..+
T Consensus 19 ~a~LYsaYMpfl~nGglFVpTnk~y~iG-~evfl~l~ll-d~pekl~vagkVaWitP~gt~sr~~GiGv~f~d~e~g~~v 96 (117)
T COG3215 19 MALLYSAYMPFLENGGLFVPTNKVYSIG-EEVFLLLELL-DFPEKLPVAGKVAWITPVGTQSRPAGIGVQFTDGENGLKV 96 (117)
T ss_pred HHHHHHHHhHHHhcCcEEcccCCccccc-hhhhhhhhhc-CchhhccccceEEEEccCCCCCCCCceeeeccCCCchhhH
Confidence 3334455555679999999999999866 5555543333 2456889999987665432110 001123357
Q ss_pred HHHHHHHHHH
Q 024050 111 RSCCEASLKR 120 (273)
Q Consensus 111 ~~~~~~sL~~ 120 (273)
++++|..|-.
T Consensus 97 r~~IE~~Lg~ 106 (117)
T COG3215 97 RNQIETLLGG 106 (117)
T ss_pred HHHHHHHHHh
Confidence 7777776653
No 419
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=20.06 E-value=6.3e+02 Score=22.54 Aligned_cols=55 Identities=16% Similarity=0.163 Sum_probs=37.6
Q ss_pred CCHHHHHHHhhc-CCceEEeeecccccccc-cccHHHHHHHhCCeEEecccCCCccC
Q 024050 164 ASPGTIRRAHAV-HPITAVQMEWSLWTRDI-EEEIIPLCRELGIGIVPYSPLGRGFF 218 (273)
Q Consensus 164 ~~~~~l~~~~~~-~~~~~~q~~~~l~~~~~-~~~l~~~~~~~gi~v~a~spl~~G~L 218 (273)
.+.+.++++++. .+..++..+.|+.-.-. ..++.+.|+++|+.++.=..++.|.+
T Consensus 113 ~d~~~l~~~i~~~~~~v~~e~~~np~g~~~dl~~i~~la~~~g~~livD~t~~~~~~ 169 (369)
T cd00614 113 DDPEALEAAIKPETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVDNTFATPYL 169 (369)
T ss_pred CCHHHHHHhcCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcchhc
Confidence 356777777643 45666666777654322 27889999999999987777665554
Done!