Query 024053
Match_columns 273
No_of_seqs 281 out of 1717
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 08:35:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024053.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024053hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02883 Branched-chain amino 100.0 6.2E-58 1.3E-62 436.5 23.5 261 12-272 2-273 (384)
2 PLN02259 branched-chain-amino- 100.0 8E-56 1.7E-60 422.7 21.4 264 7-272 1-277 (388)
3 KOG0975 Branched chain aminotr 100.0 3.1E-54 6.7E-59 401.0 17.5 218 53-270 37-262 (379)
4 PLN02782 Branched-chain amino 100.0 2.2E-53 4.8E-58 407.6 23.2 220 53-272 62-291 (403)
5 PLN03117 Branched-chain-amino- 100.0 2.7E-46 5.9E-51 353.9 24.3 220 52-272 11-240 (355)
6 PRK13357 branched-chain amino 100.0 2.2E-41 4.7E-46 320.5 23.8 217 56-272 12-238 (356)
7 TIGR01123 ilvE_II branched-cha 100.0 1.9E-35 4.2E-40 274.9 18.5 187 86-272 1-197 (313)
8 TIGR01122 ilvE_I branched-chai 100.0 6E-33 1.3E-37 256.3 18.0 177 86-272 1-191 (298)
9 PRK06606 branched-chain amino 100.0 2.3E-32 4.9E-37 253.6 18.1 178 85-272 9-199 (306)
10 PRK07544 branched-chain amino 100.0 2.5E-32 5.5E-37 251.6 17.0 174 85-272 11-197 (292)
11 PRK12479 branched-chain amino 100.0 5.7E-32 1.2E-36 250.3 17.9 173 85-272 6-191 (299)
12 PRK08320 branched-chain amino 100.0 2.7E-31 6E-36 244.0 18.4 173 85-272 5-190 (288)
13 cd01557 BCAT_beta_family BCAT_ 100.0 5.3E-31 1.2E-35 241.6 18.7 173 98-272 1-182 (279)
14 PRK13356 aminotransferase; Pro 100.0 6.7E-31 1.4E-35 241.5 17.9 172 85-272 9-192 (286)
15 cd01558 D-AAT_like D-Alanine a 100.0 4.5E-30 9.7E-35 233.4 17.1 169 86-272 1-181 (270)
16 PLN02845 Branched-chain-amino- 100.0 8.2E-30 1.8E-34 239.9 18.9 171 85-272 43-224 (336)
17 PRK06680 D-amino acid aminotra 100.0 1E-29 2.2E-34 233.8 18.5 169 85-272 5-187 (286)
18 COG0115 IlvE Branched-chain am 100.0 1.5E-29 3.3E-34 232.5 19.2 175 85-272 4-189 (284)
19 PRK07650 4-amino-4-deoxychoris 100.0 5E-29 1.1E-33 228.7 18.5 170 85-272 2-183 (283)
20 TIGR01121 D_amino_aminoT D-ami 100.0 9.7E-29 2.1E-33 226.1 18.4 169 85-272 2-182 (276)
21 TIGR03461 pabC_Proteo aminodeo 100.0 1.8E-28 3.9E-33 222.1 16.5 166 86-272 1-177 (261)
22 PRK07849 4-amino-4-deoxychoris 100.0 2.9E-28 6.3E-33 225.0 18.1 170 85-272 9-198 (292)
23 PRK12400 D-amino acid aminotra 100.0 3.2E-28 6.9E-33 224.3 17.4 172 83-272 5-189 (290)
24 PRK06092 4-amino-4-deoxychoris 100.0 4.2E-28 9.1E-33 220.6 17.2 167 85-272 2-179 (268)
25 cd01559 ADCL_like ADCL_like: 4 100.0 2E-27 4.3E-32 214.0 16.0 153 103-272 1-163 (249)
26 PRK09266 hypothetical protein; 99.9 2.3E-26 5E-31 209.3 16.5 160 85-272 5-173 (266)
27 cd00449 PLPDE_IV PyridoxaL 5'- 99.9 5.1E-26 1.1E-30 204.6 17.8 155 103-272 1-167 (256)
28 PRK07546 hypothetical protein; 99.7 7.6E-16 1.6E-20 135.7 14.5 134 110-272 4-145 (209)
29 PF01063 Aminotran_4: Aminotra 99.5 1.4E-13 3E-18 121.6 11.7 130 129-272 1-145 (231)
30 PRK07101 hypothetical protein; 99.3 3.2E-11 7E-16 105.0 11.3 123 110-272 3-132 (187)
31 KOG3442 Uncharacterized conser 45.0 44 0.00095 27.6 4.5 47 138-188 58-105 (132)
32 COG5475 Uncharacterized small 29.5 54 0.0012 23.3 2.4 23 73-95 27-55 (60)
33 PRK13740 conjugal transfer pro 25.7 47 0.001 24.6 1.6 10 128-137 42-51 (70)
34 PF03656 Pam16: Pam16; InterP 23.7 52 0.0011 27.1 1.8 40 138-181 57-97 (127)
35 PF05597 Phasin: Poly(hydroxya 23.4 95 0.0021 25.7 3.3 29 136-164 94-123 (132)
No 1
>PLN02883 Branched-chain amino acid aminotransferase
Probab=100.00 E-value=6.2e-58 Score=436.52 Aligned_cols=261 Identities=57% Similarity=0.939 Sum_probs=237.6
Q ss_pred HHHh-hhhhhcccccccccccccchhhhhhhccccccCCCCCCCccccCCCCCCCCCCCcccCCceEEEEeec-ceEEcC
Q 024053 12 CLRN-FSQSLRVGSAFLKSGDFCRYTSQAAASLQQDCEPSAYSDDESADHMDWDNLGFGLTPADYMYTMKCSN-DYFEKG 89 (273)
Q Consensus 12 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~fg~~~td~m~~~~~~~-~~w~nG 89 (273)
.||+ |.|++.++|+++..+.+.++.+++..++...+.......++..+++||++|+||++|||||++++|.+ +.|.+|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~fg~~~td~m~~~~~~~~~~w~~~ 81 (384)
T PLN02883 2 ALRRCLPQSSTTSSYLSKIWGFRMHGTKAAASVVEEHVSGAEREDEEYADVDWDKLGFSLVRTDFMFATKSCRDGNFEQG 81 (384)
T ss_pred chhhhccccccchhhhhccccceeccccccccchhhhcccccccccccccCCchhcCcCCeecCceEEEEEcCCCcccCC
Confidence 3566 78999999999999999999998877765444444456777888999999999999999999999876 489999
Q ss_pred EEeeCCCeeeCcCCCceeeCCeEEeEEEEEEcCCCeEeeeChhhHHHHHHHhHhhcCCCCCCHHHHHHHHHHHHHhcCCC
Q 024053 90 RLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRW 169 (273)
Q Consensus 90 ~ivp~~~~~Is~~d~gl~YGdgvFEglrayr~~dG~i~lFrld~Hl~RL~~Sa~~L~ip~p~~e~l~e~i~elv~~n~~~ 169 (273)
+|+|+++++|||++++||||||||||||+||++||++.+||+++|++||++||++|+||.++.++|.++|+++|++|+.|
T Consensus 82 ~i~p~~~l~l~p~a~~l~YGdgvFEg~kayr~~dG~i~lfr~~~h~~RL~~SA~rL~lp~~~~e~~~~~i~~lv~~n~~w 161 (384)
T PLN02883 82 YLSRYGNIELNPAAGILNYGQGLIEGMKAYRGEDGRILLFRPELNAMRMKIGAERMCMHSPSVHQFIEGVKQTVLANRRW 161 (384)
T ss_pred eEeeCCCcccCccccHhhcceeeeeeEEEEECCCCCEeeeChhHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceEEEEEEEEeeCCCcccCCCCCeEEEEEEeecCCCccCCCCCeEEEEecCccccCCCCcCchhhhccHHHHHH
Q 024053 170 VPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVSE 249 (273)
Q Consensus 170 vP~~~~~~lYIRp~v~~~~~~lg~~p~~~~~~~I~~~P~~~y~~~~~~gv~l~v~~~~~R~~p~g~~~iKt~gNY~~~l~ 249 (273)
||+.+++++||||+++++++.+|+.++.+++++|+++|+++|++++.+++++.+++.++|+++++++++|++|||+++++
T Consensus 162 vp~~~~~~lYIRp~v~~~~~~lG~~~~~~~~~~i~~~p~~~y~~~g~~~v~l~~~~~~~Ra~~~g~g~~K~~~nYa~~ll 241 (384)
T PLN02883 162 VPPPGKGSLYLRPLLFGSGASLGVAAAPEYTFLVFGSPVQNYFKEGTAALNLYVEEVIPRAYLGGTGGVKAISNYGPVLE 241 (384)
T ss_pred CCCCCCceEEEEEEEEecCCccCCCCCCCeEEEEEEEecccccccCcceEEEEECccccccCCCCCcccchhhhHHHHHH
Confidence 99987789999999999999899988778999999999999987777889999997679999999999999999999997
Q ss_pred H--------hccEEEEeCCCC-EEEecccccC
Q 024053 250 Y--------FSLMLFAKKLND-HNTTLPAISL 272 (273)
Q Consensus 250 a--------~deaL~LD~~g~-~~~~~~~~~~ 272 (273)
+ |||+||||.+++ ..+|++++.+
T Consensus 242 a~~eA~~~G~de~L~Ld~~~~~~V~E~~~sNl 273 (384)
T PLN02883 242 VMRRAKSRGFSDVLYLDADTGKNIEEVSAANI 273 (384)
T ss_pred HHHHHHHCCCCEEEEEeCCCCCEEEEcCcEEE
Confidence 7 999999998854 7889888754
No 2
>PLN02259 branched-chain-amino-acid aminotransferase 2
Probab=100.00 E-value=8e-56 Score=422.67 Aligned_cols=264 Identities=61% Similarity=1.069 Sum_probs=232.6
Q ss_pred HHH-HHHHHh-hhhhhcccccccccccccchhhhhhhccccc-cCCCCCCCccccCCCCCCCCCCCcccCCceEEEEeec
Q 024053 7 MIR-NACLRN-FSQSLRVGSAFLKSGDFCRYTSQAAASLQQD-CEPSAYSDDESADHMDWDNLGFGLTPADYMYTMKCSN 83 (273)
Q Consensus 7 ~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~l~fg~~~td~m~~~~~~~ 83 (273)
||+ ..+||+ |+..+++ +. ..++.+.++.++++.++... ........+++..++||++|+||+++||||++++|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~f~~~~td~m~~~~~~~ 78 (388)
T PLN02259 1 MIKTITSLRKTLVLPLHL-HI-RTLQTFAKYNAQAASALREERKKPLYQNGDDVYADLDWDNLGFGLNPADYMYVMKCSK 78 (388)
T ss_pred CccchhhhhhheEeeeeh-hh-hhhhhhhhhccccccccchhhccccccccccccccCCccccCCCCcccCceEEEEECC
Confidence 667 788999 8877776 44 67788888888887766432 3333346677778999999999999999999999976
Q ss_pred -ceEEcCEEeeCCCeeeCcCCCceeeCCeEEeEEEEEEcCCCeEeeeChhhHHHHHHHhHhhcCCCCCCHHHHHHHHHHH
Q 024053 84 -DYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQT 162 (273)
Q Consensus 84 -~~w~nG~ivp~~~~~Is~~d~gl~YGdgvFEglrayr~~dG~i~lFrld~Hl~RL~~Sa~~L~ip~p~~e~l~e~i~el 162 (273)
+.|.||+++|++++.|++.|+|||||||||||||+||.+||++.+||+++|++||++||++|+||.|+.|+|.++|.++
T Consensus 79 ~~~w~~g~ivp~~~~~i~~~drgl~YGdgvFEglkayr~~~G~i~lfr~~~h~~RL~~SA~rL~lp~~~~e~~~~~i~~l 158 (388)
T PLN02259 79 DGEFTQGELSPYGNIQLSPSAGVLNYGQAIYEGTKAYRKENGKLLLFRPDHNAIRMKLGAERMLMPSPSVDQFVNAVKQT 158 (388)
T ss_pred CCeEECCEEeEchhCeeCchhhHHHhhhhhhhcEEEEECCCCeEeecCcHHHHHHHHHhHHHhCCCCcCHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCCCCCceEEEEEEEEeeCCCcccCCCCCeEEEEEEeecCCCccCCCCCeEEEEecCccccCCCCcCchhhhc
Q 024053 163 ALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAIS 242 (273)
Q Consensus 163 v~~n~~~vP~~~~~~lYIRp~v~~~~~~lg~~p~~~~~~~I~~~P~~~y~~~~~~gv~l~v~~~~~R~~p~g~~~iKt~g 242 (273)
+++|+.|||+.+++++||||+++++++.+|+.|+.+++++|+++|+++|+.++.+++++.++++++|++|++++++|++|
T Consensus 159 v~~n~~~vp~~~~~~lyiRp~v~g~~~~lG~~p~~~~~~~i~~~p~~~~~~~g~~~i~l~v~~~~~Ra~p~~~g~~K~~~ 238 (388)
T PLN02259 159 ALANKRWVPPAGKGTLYIRPLLMGSGPILGLGPAPEYTFIVYASPVGNYFKEGMAALNLYVEEEYVRAAPGGAGGVKSIT 238 (388)
T ss_pred HHhccccCCCCCCceEEEEEEEEecCCccCcCCCCCcEEEEEEEechhhhhcCcceEEEEeecceeccCCCCCcccchhh
Confidence 99999999998778999999999888888998877899999999999988766678889887678999999999999999
Q ss_pred cHHHHHHH--------hccEEEEeCC-CCEEEecccccC
Q 024053 243 NYAPVSEY--------FSLMLFAKKL-NDHNTTLPAISL 272 (273)
Q Consensus 243 NY~~~l~a--------~deaL~LD~~-g~~~~~~~~~~~ 272 (273)
||++++++ |||+||||.. ....+|++++.+
T Consensus 239 NY~~~l~a~~eA~~~G~de~L~Ld~~~~g~V~E~~~sNl 277 (388)
T PLN02259 239 NYAPVLKALSRAKSRGFSDVLYLDSVKKKYLEEASSCNV 277 (388)
T ss_pred hHHHHHHHHHHHHHcCCCEEEEecCCCCCEEEEcCcEEE
Confidence 99999976 9999999983 345778887754
No 3
>KOG0975 consensus Branched chain aminotransferase BCAT1, pyridoxal phosphate enzymes type IV superfamily [Amino acid transport and metabolism]
Probab=100.00 E-value=3.1e-54 Score=400.97 Aligned_cols=218 Identities=53% Similarity=0.942 Sum_probs=209.9
Q ss_pred CCccccCCCCCCCCCCCcccCCceEEEEeecceEEcCEEeeCCCeeeCcCCCceeeCCeEEeEEEEEEcCCCeEeeeChh
Q 024053 53 SDDESADHMDWDNLGFGLTPADYMYTMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPD 132 (273)
Q Consensus 53 ~~~~~~~~~d~~~l~fg~~~td~m~~~~~~~~~w~nG~ivp~~~~~Is~~d~gl~YGdgvFEglrayr~~dG~i~lFrld 132 (273)
..+.+...+||++|+||.+|||||++++|+.+.|..|+|.|++++++||.+..||||||+|||+||||++||++++||||
T Consensus 37 ~~~~k~~~~d~~~L~fg~~~td~m~~~k~~~~gw~~~~I~p~gni~~~Paa~vlhy~~~lfEG~KAyRt~d~~i~LFrPd 116 (379)
T KOG0975|consen 37 QTDEKPAPIDWDELGFGLVFTDHMLTIKWSEDGWSQGEISPFGNLSLHPAAKVLHYGQGLFEGLKAYRTEDGKIRLFRPD 116 (379)
T ss_pred cCCCccCcCCHHHhccCCcccceeEEEeccccCcCCCCccCcCCEeeChhhhceecchhhccccccccCCCCeEEEecch
Confidence 44666778999999999999999999999976899999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhHhhcCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEEEEeeCCCcccCCCCCeEEEEEEeecCCCc
Q 024053 133 QNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYF 212 (273)
Q Consensus 133 ~Hl~RL~~Sa~~L~ip~p~~e~l~e~i~elv~~n~~~vP~~~~~~lYIRp~v~~~~~~lg~~p~~~~~~~I~~~P~~~y~ 212 (273)
.|++||++||.|++||.|+.++|.++|++++.+|+.|||+.+++++||||++++++..+|+.++.+++|+++++|+++||
T Consensus 117 ~N~~Rm~~sA~r~~lP~p~~~e~ie~i~~lv~~~~~wVP~~~~~SLyirp~l~Gt~~~Lgv~~~~e~~l~vi~spvg~yf 196 (379)
T KOG0975|consen 117 QNMDRMLRSAERACLPSPDVEEFIEAIKQLVLADKEWVPPPGKGSLYIRPLLIGTDPVLGVSPAPEATLFVIVSPVGPYF 196 (379)
T ss_pred hhHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCcccCCCCCceEEEeeeeccCCcccccccCCcceEEEEEcccchhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCeEEEEecCccccCCCCcCchhhhccHHHHHHH--------hccEEEEeCCCCEEEecccc
Q 024053 213 KEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVSEY--------FSLMLFAKKLNDHNTTLPAI 270 (273)
Q Consensus 213 ~~~~~gv~l~v~~~~~R~~p~g~~~iKt~gNY~~~l~a--------~deaL~LD~~g~~~~~~~~~ 270 (273)
+.+.+|++|.+.+.++|++|+|+++.|+++||++++++ |+|+||||.+++-++|.+|-
T Consensus 197 ~~g~~~v~L~v~~~~~Ra~pgg~g~~k~~~NY~P~vl~q~eA~~~G~~dvLwL~~d~~~ItEv~tm 262 (379)
T KOG0975|consen 197 KSGFKGVNLLVDPEFVRAWPGGTGGVKLGGNYAPNVLAQKEAKSKGASDVLWLDGDGGYITEVGTM 262 (379)
T ss_pred cccccceEEEEecceeecCCCCCCceeeccccchHHHHHHHHHhcCcceeEEEecCCCceeeccce
Confidence 99999999999999999999999999999999999887 99999999999988898764
No 4
>PLN02782 Branched-chain amino acid aminotransferase
Probab=100.00 E-value=2.2e-53 Score=407.60 Aligned_cols=220 Identities=65% Similarity=1.212 Sum_probs=202.4
Q ss_pred CCccccCCCCCCCCCCCcccCCceEEEEeec-ceEEcCEEeeCCCeeeCcCCCceeeCCeEEeEEEEEEcCCCeEeeeCh
Q 024053 53 SDDESADHMDWDNLGFGLTPADYMYTMKCSN-DYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRP 131 (273)
Q Consensus 53 ~~~~~~~~~d~~~l~fg~~~td~m~~~~~~~-~~w~nG~ivp~~~~~Is~~d~gl~YGdgvFEglrayr~~dG~i~lFrl 131 (273)
...++..++||++|+||+++||||++++|++ +.|.||+|+|++++.|++.|+|||||||||||||+||++||++++|||
T Consensus 62 ~~~~~~~~~~~~~l~fg~~~td~m~~~~~~~~~~w~ng~ivp~~~~~i~~~d~gl~YGdgvFEg~kayr~~~G~i~lFr~ 141 (403)
T PLN02782 62 TEVTELADIDWDNLGFGLVPTDYMYIMKCNRDGEFSKGELQRFGNIELSPSAGVLNYGQGLFEGLKAYRKEDGNILLFRP 141 (403)
T ss_pred cCCcccccCCccccCCCccccCceEEEEECCCCcEeCCEEEECCCCEeChhhhHHhhhhhhhheEEEEEcCCCcEeeeCh
Confidence 3455567899999999999999999999965 589999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhHhhcCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEEEEeeCCCcccCCCCCeEEEEEEeecCCC
Q 024053 132 DQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNY 211 (273)
Q Consensus 132 d~Hl~RL~~Sa~~L~ip~p~~e~l~e~i~elv~~n~~~vP~~~~~~lYIRp~v~~~~~~lg~~p~~~~~~~I~~~P~~~y 211 (273)
++|++||++||++|+||.++.|+|.++|++++++|+.|||+..++++||||+++++++.+|+.++.+++++|++.|+++|
T Consensus 142 d~H~~RL~~SA~rL~lp~~~~e~l~~~i~~lv~~n~~~vP~~~~~~lyiRp~v~g~~~~lG~~~~~~~~~~i~~~p~~~~ 221 (403)
T PLN02782 142 EENAIRMRNGAERMCMPAPTVEQFVEAVKETVLANKRWVPPPGKGSLYIRPLLMGSGAVLGLAPAPEYTFLIYVSPVGNY 221 (403)
T ss_pred HHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHHhccccCCCCCCccEEEEEEEEecCCCcCcCCCCCcEEEEEEEECccc
Confidence 99999999999999999999999999999999999999999877899999999999988999887789999999999998
Q ss_pred ccCCCCCeEEEEecCccccCCCCcCchhhhccHHHHHHH--------hccEEEEeCC-CCEEEecccccC
Q 024053 212 FKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVSEY--------FSLMLFAKKL-NDHNTTLPAISL 272 (273)
Q Consensus 212 ~~~~~~gv~l~v~~~~~R~~p~g~~~iKt~gNY~~~l~a--------~deaL~LD~~-g~~~~~~~~~~~ 272 (273)
+.++.+|+++.++++++|++|++++++|++|||++++++ |||+||||.. ....+|++++.+
T Consensus 222 ~~~g~~~v~l~v~~~~~Ra~p~g~g~~Kt~~nY~~~l~a~~eA~~~G~de~L~Ld~~~~g~V~E~~~sNl 291 (403)
T PLN02782 222 FKEGVAPINLIVENEFHRATPGGTGGVKTIGNYAAVLKAQSIAKAKGYSDVLYLDCVHKKYLEEVSSCNI 291 (403)
T ss_pred cccCCccEEEEEeCceeecCCCCCcccchhhhHHHHHHHHHHHHHcCCCEEEEEeCCCCCEEEEcCcEEE
Confidence 877778999999867899999999999999999999976 9999999973 446788887754
No 5
>PLN03117 Branched-chain-amino-acid aminotransferase; Provisional
Probab=100.00 E-value=2.7e-46 Score=353.86 Aligned_cols=220 Identities=58% Similarity=1.087 Sum_probs=196.0
Q ss_pred CCCccccCCCCCCCCCCCcccCCceEEEEeecc-eEEcCEEeeCCCeeeCcCCCceeeCCeEEeEEEEEEcCCCeEeeeC
Q 024053 52 YSDDESADHMDWDNLGFGLTPADYMYTMKCSND-YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFR 130 (273)
Q Consensus 52 ~~~~~~~~~~d~~~l~fg~~~td~m~~~~~~~~-~w~nG~ivp~~~~~Is~~d~gl~YGdgvFEglrayr~~dG~i~lFr 130 (273)
........++||++||||.+|||||+.++|+++ +|+||+++|.+++.|++.|+|||||||||||||+|+..||++.+|+
T Consensus 11 ~~~~~~~~~~~~~~~~f~~~~~~~m~~~~~~~~~~~~ng~~v~~~~a~i~~~drgl~yGDGvFEtir~y~~~~G~i~lf~ 90 (355)
T PLN03117 11 SKADEKYANVKWEELGFALVPTDYMYVAKCKQGESFSEGKIVPYGDISISPCAGILNYGQGLFEGLKAYRTEDGRITLFR 90 (355)
T ss_pred CCccccccccCccccCCCccccCceEEEEcCCCCeEECCEEEEchhceeCcchhhhhhcceeEeeEEEEECCCCcEeeeC
Confidence 344555567999999999999999999999876 7999999999999999999999999999999999988899888999
Q ss_pred hhhHHHHHHHhHhhcCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEEEEeeCCCcccCCCCCeEEEEEEeecCC
Q 024053 131 PDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGN 210 (273)
Q Consensus 131 ld~Hl~RL~~Sa~~L~ip~p~~e~l~e~i~elv~~n~~~vP~~~~~~lYIRp~v~~~~~~lg~~p~~~~~~~I~~~P~~~ 210 (273)
+++|++||++||++|+||.|+.++|.++|.+++++|+.|+|+...+.+||||+++++++.+|+.+..++.++|++.|.++
T Consensus 91 l~~Hl~RL~~Sa~~L~i~~p~~~~l~~~i~~lv~~n~~~i~~~~~~~~yir~~~~g~~~~~g~~~~~~~~~~i~~~p~~~ 170 (355)
T PLN03117 91 PDQNALRMQTGADRLCMTPPSLEQFVEAVKQTVLANKKWVPPPGKGTLYIRPLLIGSGAVLGVAPAPEYTFLIYASPVGN 170 (355)
T ss_pred cHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhccccccCCCCCcEEEEEEEEEecCccCcCCCCCcEEEEEEEeccc
Confidence 99999999999999999999999999999999999999999877778999999998877778877667889999999876
Q ss_pred CccCCCCCeEEEEecCccccCCCCcCchhhhccHHHHHHH--------hccEEEEeCC-CCEEEecccccC
Q 024053 211 YFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVSEY--------FSLMLFAKKL-NDHNTTLPAISL 272 (273)
Q Consensus 211 y~~~~~~gv~l~v~~~~~R~~p~g~~~iKt~gNY~~~l~a--------~deaL~LD~~-g~~~~~~~~~~~ 272 (273)
++.. .+|+++.+++.++|+.+.+++++|+++||++++++ |||+||||.+ +....|++++.+
T Consensus 171 ~~~~-~~gi~l~~~~~~~r~~~~~l~~~K~~~nyl~~vla~~eA~~~G~deaL~ld~~~~g~v~E~~~sNl 240 (355)
T PLN03117 171 YHKA-SSGLNLKVDHKHRRAHSGGTGGVKSCTNYSPVVKSLIEAKSSGFSDVLFLDAATGKNIEELSACNI 240 (355)
T ss_pred cccC-CCCEEEEEcCceEeCCCCCccchhhhhhhHHHHHHHHHHHHCCCCEEEEEeCCCCCEEEEcCcEEE
Confidence 6543 47999998755788888889999998799999887 9999999986 447899988754
No 6
>PRK13357 branched-chain amino acid aminotransferase; Provisional
Probab=100.00 E-value=2.2e-41 Score=320.48 Aligned_cols=217 Identities=43% Similarity=0.816 Sum_probs=188.9
Q ss_pred cccCCCCCCCCCCCcccCCceEEEEeecceEEcCEEeeCCCeeeCcCCCceeeCCeEEeEEEEEEcCCCeEeeeChhhHH
Q 024053 56 ESADHMDWDNLGFGLTPADYMYTMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNA 135 (273)
Q Consensus 56 ~~~~~~d~~~l~fg~~~td~m~~~~~~~~~w~nG~ivp~~~~~Is~~d~gl~YGdgvFEglrayr~~dG~i~lFrld~Hl 135 (273)
..+..+||++||||++.+|||++..|++|.|+||+++|.+++.|++.|+||+||||||||+|+|+..+|++++|++++|+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nG~~vp~~~a~is~~Drg~~yGDGvFEtir~~~~~~G~~~~f~l~~Hl 91 (356)
T PRK13357 12 DEKRAIDWANLGFGYVFTDHMVVIDYKDGKWHDARLVPYGPLELDPAATVLHYGQEIFEGLKAYRHKDGSIVLFRPDANA 91 (356)
T ss_pred ccccCCCccccCCCccccceeEEEEecCCcccCCeEeeCCCceeCcccchhhhcceeeeeEEEEEcCCCcEeeeChHHHH
Confidence 34456899999999999999999999999999999999999999999999999999999999998778888899999999
Q ss_pred HHHHHhHhhcCCCCCCHHHHHHHHHHHHHhcCCCCCC-CCCceEEEEEEEEeeCCCcccCCCCCeEEEEEEeecCCCccC
Q 024053 136 IRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPP-PGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKE 214 (273)
Q Consensus 136 ~RL~~Sa~~L~ip~p~~e~l~e~i~elv~~n~~~vP~-~~~~~lYIRp~v~~~~~~lg~~p~~~~~~~I~~~P~~~y~~~ 214 (273)
+||.+||++|+||.++.++|.+++.+++++|+.++++ ..+..+|||++++++.+.+|+.+.+.++++|++.|..+++..
T Consensus 92 ~RL~~Sa~~L~i~~~~~~~l~~~i~~li~~n~~~~~~~~~~~~~~ir~~v~rg~~~~g~~~~~~~~~~i~~~~~~~~~~~ 171 (356)
T PRK13357 92 KRLQRSADRLLMPELPEELFLEAVKQLVKADRDWVPPYGEGASLYLRPFMIATEPFLGVKPAEEYIFCVIASPVGAYFKG 171 (356)
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcccccCCCCCCccEEEEEEEEccCCcccccCCCccEEEEEEEechhhccc
Confidence 9999999999999779999999999999999876643 234589999999999887888765678999999987766554
Q ss_pred CCCCeEEEEecCccccCCCCcCchhhhccHHHHHHH--------hccEEEEeCC-CCEEEecccccC
Q 024053 215 GLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVSEY--------FSLMLFAKKL-NDHNTTLPAISL 272 (273)
Q Consensus 215 ~~~gv~l~v~~~~~R~~p~g~~~iKt~gNY~~~l~a--------~deaL~LD~~-g~~~~~~~~~~~ 272 (273)
+.+|+++.++..+.|..+..++++|+.+||+.++++ |||+||||.+ .....|++++.+
T Consensus 172 ~~~~v~l~~~~~~~r~~~~~l~~~Kt~~nyl~~vla~~eA~~~G~deaL~ld~~~~G~V~E~s~sNl 238 (356)
T PRK13357 172 GVKPVSIWVSDEYDRAAPGGTGAAKVGGNYAASLLAQAEAKEKGCDQVLYLDAVEHTYIEEVGGMNF 238 (356)
T ss_pred CCCceEEEEcCCeEecCCCCcchhhcccccHHHHHHHHHHHHCCCCEEEEEcCCCCCEEEEcCcEEE
Confidence 457899888756788888888999995699999887 9999999963 336788887754
No 7
>TIGR01123 ilvE_II branched-chain amino acid aminotransferase, group II. Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family less similar to the DAAT family.
Probab=100.00 E-value=1.9e-35 Score=274.93 Aligned_cols=187 Identities=48% Similarity=0.882 Sum_probs=162.6
Q ss_pred EEcCEEeeCCCeeeCcCCCceeeCCeEEeEEEEEEcCCCeEeeeChhhHHHHHHHhHhhcCCCCCCHHHHHHHHHHHHHh
Q 024053 86 FEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALA 165 (273)
Q Consensus 86 w~nG~ivp~~~~~Is~~d~gl~YGdgvFEglrayr~~dG~i~lFrld~Hl~RL~~Sa~~L~ip~p~~e~l~e~i~elv~~ 165 (273)
|+||+++|.+++.|++.|+||+||||||||||+|+..+|++.+|++++|++||.+||++|+||.++.++|.+.+++++++
T Consensus 1 ~~nG~~~~~~~a~i~~~Drg~~yGdGvFEtir~~~~~~g~~~~~~l~~Hl~RL~~sa~~L~i~~~~~~~l~~~l~~~~~~ 80 (313)
T TIGR01123 1 WHNGRLTPYGPLHLDPGSTVLHYGQECFEGLKAYRCADGSIVLFRPDANAARLRRSARRLLMPELPDELFLEALRQLVKA 80 (313)
T ss_pred CCCCEEEECccCeeCcchhHHHhhhhheeeeeEEECCCCcEeeeChHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999998888988899999999999999999999988999999999999999
Q ss_pred cCCCCCCCC-CceEEEEEEEEeeCCCcccCCCCCeEEEEEEeecCCCccCCCCCeEEEEecCccccCCCCcCchhhhccH
Q 024053 166 NKRWVPPPG-KGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNY 244 (273)
Q Consensus 166 n~~~vP~~~-~~~lYIRp~v~~~~~~lg~~p~~~~~~~I~~~P~~~y~~~~~~gv~l~v~~~~~R~~p~g~~~iKt~gNY 244 (273)
|+.++++.. +..+|||++++++.+.+|+.+++.+.++|++.|..+++..+.+++++.++..+.|..+..++++|+.+||
T Consensus 81 ~~~~~~~~~~~~~~~ir~~v~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~l~~~K~~~ny 160 (313)
T TIGR01123 81 NKDWVPPYGSGASLYLRPFVIGTEPNLGVRPAPEYLFYVFASPVGAYFKGGLAPVSIFVTTEYDRAAPGGTGAVKVGGNY 160 (313)
T ss_pred ccccCCCCCCCCcEEEEeEEEecCCccccCCCCccEEEEEEEEchhhccccccceeEEecccceecCCCCCccceecccc
Confidence 988776543 4579999999999887888766678889999887766554445777766546788887778999996699
Q ss_pred HHHHHH--------hccEEEEeCCCC-EEEecccccC
Q 024053 245 APVSEY--------FSLMLFAKKLND-HNTTLPAISL 272 (273)
Q Consensus 245 ~~~l~a--------~deaL~LD~~g~-~~~~~~~~~~ 272 (273)
+.++++ |||+|+||.+|+ ..+|++++.+
T Consensus 161 l~~vla~~eA~~~g~deal~ld~~g~g~v~E~~~sNl 197 (313)
T TIGR01123 161 AASLLAQAKAAEQGCDQVVYLDPVEHTYIEEVGAMNF 197 (313)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeCCCCeEEEEcCcEeE
Confidence 999887 999999999997 5788887754
No 8
>TIGR01122 ilvE_I branched-chain amino acid aminotransferase, group I. Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family more strongly similar to the DAAT family.
Probab=100.00 E-value=6e-33 Score=256.31 Aligned_cols=177 Identities=25% Similarity=0.401 Sum_probs=151.7
Q ss_pred EEcCEEeeCCCeeeCcCCCceeeCCeEEeEEEEEEcCCCeEeeeChhhHHHHHHHhHhhcCCCCC-CHHHHHHHHHHHHH
Q 024053 86 FEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTAL 164 (273)
Q Consensus 86 w~nG~ivp~~~~~Is~~d~gl~YGdgvFEglrayr~~dG~i~lFrld~Hl~RL~~Sa~~L~ip~p-~~e~l~e~i~elv~ 164 (273)
|+||+++|.+++.|++.|+||+||||||||+|+|.+.+| ..+|++++|++||.+||++|+|+.| +.++|.+++.++++
T Consensus 1 ~~ng~~v~~~~~~i~~~drg~~~GdgvFEt~r~~~g~~~-~~~~~l~~Hl~RL~~Sa~~l~i~~~~~~~~l~~~i~~~i~ 79 (298)
T TIGR01122 1 WMDGEFVDWEDAKVHVLTHALHYGTGVFEGIRAYDTDKG-PAIFRLKEHIQRLYDSAKIYRMEIPYSKEELMEATRETLR 79 (298)
T ss_pred CcCCEEEEhhhcccChhhhhhhccceEEEEEEEEcCCCc-ceeeChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999944332 2578999999999999999999977 89999999999999
Q ss_pred hcCCCCCCCCCceEEEEEEEEeeCCCcccCCCC--CeEEEEEEeecCCCccCC--CCCeEEEEecCccccCCCC-cCchh
Q 024053 165 ANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAP--EYTFLVFASPVGNYFKEG--LAPLNLYVEDEFHRATPGG-AGGVK 239 (273)
Q Consensus 165 ~n~~~vP~~~~~~lYIRp~v~~~~~~lg~~p~~--~~~~~I~~~P~~~y~~~~--~~gv~l~v~~~~~R~~p~g-~~~iK 239 (273)
+|+. .++|||++++++.+.+|+.++. +++++|++.|.+.++... .+|+++.++ ++.|..+.. ++++|
T Consensus 80 ~~~~-------~~~~ir~~v~rg~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~-~~~r~~~~~~~~~~K 151 (298)
T TIGR01122 80 KNNL-------RSAYIRPLVFRGDGDLGLNPRAGYKPDVIIAAWPWGAYLGEEALEKGIDAKVS-SWRRNAPNTIPTAAK 151 (298)
T ss_pred hcCC-------CCEEEEEEEEEccCCCCcCCCCCCCceEEEEEeccccccCcccccCCeEEEEE-EEEcCCCCCcCccch
Confidence 9875 5799999999998888887632 688999999887655432 379999998 578877666 58999
Q ss_pred hhccHHHHHHH--------hccEEEEeCCCCEEEecccccC
Q 024053 240 AISNYAPVSEY--------FSLMLFAKKLNDHNTTLPAISL 272 (273)
Q Consensus 240 t~gNY~~~l~a--------~deaL~LD~~g~~~~~~~~~~~ 272 (273)
++|||+.++++ |||+||||.+|++ +|++++.+
T Consensus 152 ~~~~yl~~v~a~~~a~~~g~de~l~ld~~g~v-~E~s~sNl 191 (298)
T TIGR01122 152 AGGNYLNSLLAKSEARRHGYDEAILLDVEGYV-AEGSGENI 191 (298)
T ss_pred hhhhhHHHHHHHHHHHHcCCCEEEEECCCCCE-EECCceEE
Confidence 99779999887 9999999999965 78887764
No 9
>PRK06606 branched-chain amino acid aminotransferase; Validated
Probab=100.00 E-value=2.3e-32 Score=253.58 Aligned_cols=178 Identities=25% Similarity=0.397 Sum_probs=152.2
Q ss_pred eEEcCEEeeCCCeeeCcCCCceeeCCeEEeEEEEEEcCCCeEeeeChhhHHHHHHHhHhhcCCCCC-CHHHHHHHHHHHH
Q 024053 85 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTA 163 (273)
Q Consensus 85 ~w~nG~ivp~~~~~Is~~d~gl~YGdgvFEglrayr~~dG~i~lFrld~Hl~RL~~Sa~~L~ip~p-~~e~l~e~i~elv 163 (273)
+|+||+++|.+++.|++.|+||+||||||||+|++.+.+|. .+|++++|++||++||++|+|+.| +.++|.+.+.+++
T Consensus 9 ~~~nG~~~~~~~~~i~~~drg~~~GdgvFEtir~~~g~~~~-~~~~l~~Hl~RL~~Sa~~l~i~~~~~~~~l~~~i~~~i 87 (306)
T PRK06606 9 IWFNGELVPWEDAKVHVLTHALHYGTGVFEGIRAYDTPKGP-AIFRLREHTKRLFNSAKILRMEIPYSVDELMEAQREVV 87 (306)
T ss_pred EEECCEEEEhHHcccChhhhhhhhcceeEEEEEEecCCCCC-eeeChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999444343 389999999999999999999987 7999999999999
Q ss_pred HhcCCCCCCCCCceEEEEEEEEeeCCCcccCCCC-CeEEEEEEeecCCCccCC--CCCeEEEEecCccccCCCC-cCchh
Q 024053 164 LANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAP-EYTFLVFASPVGNYFKEG--LAPLNLYVEDEFHRATPGG-AGGVK 239 (273)
Q Consensus 164 ~~n~~~vP~~~~~~lYIRp~v~~~~~~lg~~p~~-~~~~~I~~~P~~~y~~~~--~~gv~l~v~~~~~R~~p~g-~~~iK 239 (273)
++|+. .++|||++++++.+.+|+.+.. .+.++|++.|..+|+... .+|+++.++ ++.|..+.. ++++|
T Consensus 88 ~~~~~-------~~~~ir~~v~rg~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~gv~l~~~-~~~r~~~~~~~~~~K 159 (306)
T PRK06606 88 RKNNL-------KSAYIRPLVFVGDEGLGVRPHGLPTDVAIAAWPWGAYLGEEALEKGIRVKVS-SWTRHAPNSIPTRAK 159 (306)
T ss_pred HhcCC-------CCEEEEEEEEecCCccCcCCCCCCceEEEEEeccccccCcccccCCeEEEEe-eEecCCCCCcCcchh
Confidence 99875 5799999999998888887543 678888888877665432 369999998 577877665 68899
Q ss_pred hhccHHHHHHH--------hccEEEEeCCCCEEEecccccC
Q 024053 240 AISNYAPVSEY--------FSLMLFAKKLNDHNTTLPAISL 272 (273)
Q Consensus 240 t~gNY~~~l~a--------~deaL~LD~~g~~~~~~~~~~~ 272 (273)
+++||+.++++ |||+||||++|++ +|++++.+
T Consensus 160 ~~~nyl~~vla~~ea~~~G~de~l~l~~~g~v-~E~~~sNl 199 (306)
T PRK06606 160 ASGNYLNSILAKTEARRNGYDEALLLDVEGYV-SEGSGENI 199 (306)
T ss_pred hhhccHHHHHHHHHHHHcCCCEEEEECCCCCE-EEcCceEE
Confidence 87799999877 9999999999964 78877654
No 10
>PRK07544 branched-chain amino acid aminotransferase; Validated
Probab=100.00 E-value=2.5e-32 Score=251.63 Aligned_cols=174 Identities=21% Similarity=0.339 Sum_probs=148.4
Q ss_pred eEEcCEEeeCCCeeeCcCCCceeeCCeEEeEEEEEEcCCCeEeeeChhhHHHHHHHhHhhcCCCCC-CHHHHHHHHHHHH
Q 024053 85 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTA 163 (273)
Q Consensus 85 ~w~nG~ivp~~~~~Is~~d~gl~YGdgvFEglrayr~~dG~i~lFrld~Hl~RL~~Sa~~L~ip~p-~~e~l~e~i~elv 163 (273)
.|+||+++|.+++.|++.|+||+||||||||+|+| +| ++|++++|++||++||++|+|+.| +.+.|.+.+.+++
T Consensus 11 ~~~nG~~~~~~~~~i~~~drg~~~GdgvFEt~r~~---~g--~~~~l~~Hl~RL~~Sa~~l~i~~~~~~~~l~~~i~~~i 85 (292)
T PRK07544 11 IWMDGELVPWRDAKVHVLTHGLHYASSVFEGERAY---GG--KIFKLREHSERLRRSAELLDFEIPYSVAEIDAAKKETL 85 (292)
T ss_pred EEECCEEEEhHHCccChhhhHhhhcceeEEeeEee---CC--cccChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999 99 578999999999999999999987 8999999999999
Q ss_pred HhcCCCCCCCCCceEEEEEEEEeeCCCcccCCCC-CeEEEEEEeecCCCcc--CCCCCeEEEEecCccccCCCC-cCchh
Q 024053 164 LANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAP-EYTFLVFASPVGNYFK--EGLAPLNLYVEDEFHRATPGG-AGGVK 239 (273)
Q Consensus 164 ~~n~~~vP~~~~~~lYIRp~v~~~~~~lg~~p~~-~~~~~I~~~P~~~y~~--~~~~gv~l~v~~~~~R~~p~g-~~~iK 239 (273)
++|+. .+.|||++++++.+.+|+.+++ .+.++|...|.++++. ...+|+++.++ .+.|..+.. .+.+|
T Consensus 86 ~~~~~-------~~~~ir~~v~rg~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~gv~l~~~-~~~r~~~~~~~~~~k 157 (292)
T PRK07544 86 AANGL-------TDAYVRPVAWRGSEMMGVSAQQNKIHLAIAAWEWPSYFDPEAKMKGIRLDIA-KWRRPDPETAPSAAK 157 (292)
T ss_pred HhcCC-------CCeEEEEEEEecCCCCCcCCCCCCcEEEEEEeccccccCccccCCCEEEEEe-EEEcCCCCCcCHhhh
Confidence 99975 5789999999998878876544 4567777766655443 22479999998 577776665 56789
Q ss_pred hhccHHHHHHH--------hccEEEEeCCCCEEEecccccC
Q 024053 240 AISNYAPVSEY--------FSLMLFAKKLNDHNTTLPAISL 272 (273)
Q Consensus 240 t~gNY~~~l~a--------~deaL~LD~~g~~~~~~~~~~~ 272 (273)
++|||+.++++ |||+||||.+|+ ..|++++.+
T Consensus 158 ~~~~yl~~vla~~~A~~~G~deal~ld~~g~-V~E~~~sNl 197 (292)
T PRK07544 158 AAGLYMICTISKHAAEAKGYADALMLDYRGY-VAEATGANI 197 (292)
T ss_pred hhcccHHHHHHHHHHHHcCCCeEEEECCCCC-EEEcCceEE
Confidence 98899998876 999999999884 678887754
No 11
>PRK12479 branched-chain amino acid aminotransferase; Provisional
Probab=100.00 E-value=5.7e-32 Score=250.28 Aligned_cols=173 Identities=23% Similarity=0.311 Sum_probs=149.1
Q ss_pred eEEcCEEeeCCCeeeCcCCCceeeCCeEEeEEEEEEcCCCeEeeeChhhHHHHHHHhHhhcCCCCC-CHHHHHHHHHHHH
Q 024053 85 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTA 163 (273)
Q Consensus 85 ~w~nG~ivp~~~~~Is~~d~gl~YGdgvFEglrayr~~dG~i~lFrld~Hl~RL~~Sa~~L~ip~p-~~e~l~e~i~elv 163 (273)
+|+||+++|.+++.|++.|+||+||||||||||+| +| ++|++++|++||.+||++|+|+.| +.+++.+.+.+++
T Consensus 6 ~~~nG~~~~~~~~~i~~~drg~~~GdgvFEt~r~~---~g--~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~~i 80 (299)
T PRK12479 6 IYMNGEFVEKEKAVVSVYDHGFLYGDGVFEGIRSY---GG--NVFCLKEHVKRLYESAKSILLTIPLTVDEMEEAVLQTL 80 (299)
T ss_pred EEECCEEeEHHHCccccccchhheeeeEEEEEEEE---CC--EecCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999 99 678999999999999999999988 8999999999999
Q ss_pred HhcCCCCCCCCCceEEEEEEEEeeCCCcccCCCC--CeEEEEEEeecCCCccCC-CCCeEEEEecCccccCCCC-cCchh
Q 024053 164 LANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAP--EYTFLVFASPVGNYFKEG-LAPLNLYVEDEFHRATPGG-AGGVK 239 (273)
Q Consensus 164 ~~n~~~vP~~~~~~lYIRp~v~~~~~~lg~~p~~--~~~~~I~~~P~~~y~~~~-~~gv~l~v~~~~~R~~p~g-~~~iK 239 (273)
++|+. .+.|||++++++.+.+|+.+.. +++++|++.|...+.... .+|+++.++ .+.|..+.. .+.+|
T Consensus 81 ~~~~~-------~~~~ir~~v~rg~g~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~gv~~~~~-~~~r~~~~~~~~~~K 152 (299)
T PRK12479 81 QKNEY-------ADAYIRLIVSRGKGDLGLDPRSCVKPSVIIIAEQLKLFPQEFYDNGLSVVSV-ASRRNTPDALDPRIK 152 (299)
T ss_pred HHcCC-------CCeEEEEEEEecCCCCCCCCccCCCceEEEEEEEcccCChhHHhCCeEEEEE-eEeccCCCccCccch
Confidence 99865 5789999999998888887643 578889988875443322 368998888 478877665 46899
Q ss_pred hhccHHHHHHH--------hccEEEEeCCCCEEEecccccC
Q 024053 240 AISNYAPVSEY--------FSLMLFAKKLNDHNTTLPAISL 272 (273)
Q Consensus 240 t~gNY~~~l~a--------~deaL~LD~~g~~~~~~~~~~~ 272 (273)
+. ||+.++++ |||+||||.+|+ ..|++++.+
T Consensus 153 ~~-nyl~~vla~~ea~~~g~de~l~ld~~g~-v~E~s~sNl 191 (299)
T PRK12479 153 SM-NYLNNVLVKIEAAQAGVLEALMLNQQGY-VCEGSGDNV 191 (299)
T ss_pred hh-hhHHHHHHHHHHHHcCCCEEEEEcCCCc-EEECCceEE
Confidence 98 99999887 899999999984 678877654
No 12
>PRK08320 branched-chain amino acid aminotransferase; Reviewed
Probab=99.97 E-value=2.7e-31 Score=243.99 Aligned_cols=173 Identities=24% Similarity=0.322 Sum_probs=147.9
Q ss_pred eEEcCEEeeCCCeeeCcCCCceeeCCeEEeEEEEEEcCCCeEeeeChhhHHHHHHHhHhhcCCCCC-CHHHHHHHHHHHH
Q 024053 85 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTA 163 (273)
Q Consensus 85 ~w~nG~ivp~~~~~Is~~d~gl~YGdgvFEglrayr~~dG~i~lFrld~Hl~RL~~Sa~~L~ip~p-~~e~l~e~i~elv 163 (273)
+|+||++++..++.|++.|+||+||||||||||++ +| .+|++++|++||.+||++|+|+.| +.+++.+++.+++
T Consensus 5 ~~~nG~~~~~~~~~i~~~drg~~~GdgvFEt~~v~---~g--~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~~i 79 (288)
T PRK08320 5 IYLNGEFVPKEEAKVSVFDHGFLYGDGVFEGIRAY---NG--RVFRLKEHIDRLYDSAKAIMLEIPLSKEEMTEIVLETL 79 (288)
T ss_pred EEECCEEEEHHHCcccccchhhhhcceEEEEEEEE---CC--EeecHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999 99 578999999999999999999877 8999999999999
Q ss_pred HhcCCCCCCCCCceEEEEEEEEeeCCCcccCCCC--CeEEEEEEeecCCCccCC-CCCeEEEEecCccccCCCC-cCchh
Q 024053 164 LANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAP--EYTFLVFASPVGNYFKEG-LAPLNLYVEDEFHRATPGG-AGGVK 239 (273)
Q Consensus 164 ~~n~~~vP~~~~~~lYIRp~v~~~~~~lg~~p~~--~~~~~I~~~P~~~y~~~~-~~gv~l~v~~~~~R~~p~g-~~~iK 239 (273)
++|+. .+.+||++++++.+.+|+.+.. ++.+++++.|..++.... .+|+++.++ .+.|..+.. .+++|
T Consensus 80 ~~~~~-------~~~~iri~v~rg~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~r~~~~~~~~~~K 151 (288)
T PRK08320 80 RKNNL-------RDAYIRLVVSRGVGDLGLDPRKCPKPTVVCIAEPIGLYPGELYEKGLKVITV-STRRNRPDALSPQVK 151 (288)
T ss_pred HhcCC-------CCEEEEEEEEECCCcCCCCcccCCCceEEEEEEEcCcCChhHHhcCeEEEEE-eeeccCCCCcCccch
Confidence 99875 5789999999988888887653 567888888876544322 368988888 467776655 47899
Q ss_pred hhccHHHHHHH--------hccEEEEeCCCCEEEecccccC
Q 024053 240 AISNYAPVSEY--------FSLMLFAKKLNDHNTTLPAISL 272 (273)
Q Consensus 240 t~gNY~~~l~a--------~deaL~LD~~g~~~~~~~~~~~ 272 (273)
+. ||+.++++ |||+||+|.+|+ .+||+++.+
T Consensus 152 ~~-nyl~~v~a~~~A~~~g~de~L~ld~~g~-v~E~s~sNl 190 (288)
T PRK08320 152 SL-NYLNNILAKIEANLAGVDEAIMLNDEGY-VAEGTGDNI 190 (288)
T ss_pred hh-hhHHHHHHHHHHHHcCCCEEEEECCCCe-EEEcCcEEE
Confidence 98 99999887 999999999984 577887754
No 13
>cd01557 BCAT_beta_family BCAT_beta_family: Branched-chain aminotransferase catalyses the transamination of the branched-chain amino acids leusine, isoleucine and valine to their respective alpha-keto acids, alpha-ketoisocaproate, alpha-keto-beta-methylvalerate and alpha-ketoisovalerate. The enzyme requires pyridoxal 5'-phosphate (PLP) as a cofactor to catalyze the reaction. It has been found that mammals have two foms of the enzyme - mitochondrial and cytosolic forms while bacteria contain only one form of the enzyme. The mitochondrial form plays a significant role in skeletal muscle glutamine and alanine synthesis and in interorgan nitrogen metabolism.Members of this subgroup are widely distributed in all three forms of life.
Probab=99.97 E-value=5.3e-31 Score=241.62 Aligned_cols=173 Identities=45% Similarity=0.803 Sum_probs=147.7
Q ss_pred eeCcCCCceeeCCeEEeEEEEEEcCCCeEeeeChhhHHHHHHHhHhhcCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCce
Q 024053 98 ELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGS 177 (273)
Q Consensus 98 ~Is~~d~gl~YGdgvFEglrayr~~dG~i~lFrld~Hl~RL~~Sa~~L~ip~p~~e~l~e~i~elv~~n~~~vP~~~~~~ 177 (273)
+|++.|+||+||||||||+|+|...||+-++|++++|++||.+||++|+|+.++.++|.+++.+++++|+.|.|.....+
T Consensus 1 ~i~~~drg~~yGdgvFEtir~~~~~~g~g~~~~l~~Hl~RL~~sa~~l~i~~~~~~~l~~~i~~~i~~~~~~~~~~~~~~ 80 (279)
T cd01557 1 SLHPATHALHYGQAVFEGLKAYRTPDGKIVLFRPDENAERLNRSARRLGLPPFSVEEFIDAIKELVKLDADWVPYGGGAS 80 (279)
T ss_pred CcCccccHhhcChhheeeEEEEecCCCCEeEECHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhccccCCCCCCCC
Confidence 47899999999999999999995444544789999999999999999999955999999999999999999977665678
Q ss_pred EEEEEEEEeeCCCcccCCCCCeEEEEEEeecCCCccCCCCCeEEEEecCccccCCCCcCchhhhccHHHHHHH-------
Q 024053 178 LYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVSEY------- 250 (273)
Q Consensus 178 lYIRp~v~~~~~~lg~~p~~~~~~~I~~~P~~~y~~~~~~gv~l~v~~~~~R~~p~g~~~iKt~gNY~~~l~a------- 250 (273)
+|||++++++.+.+|+.++.+++++|++.|.++++....+|+++.++ ++.|..+..++.+|+.+||+.++++
T Consensus 81 ~~ir~~v~rg~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~gv~l~~~-~~~r~~~~~~~~~K~~~nyl~~vla~~eA~~~ 159 (279)
T cd01557 81 LYIRPFIFGTDPQLGVSPALEYLFAVFASPVGAYFKGGEKGVSALVS-SFRRAAPGGPGAAKAGGNYAASLLAQKEAAEK 159 (279)
T ss_pred EEEEEEEEeccccCCcCCCCccEEEEEEEEccccccCCCCCeEEEEe-eEEcCCCCCCcccchhhccHHHHHHHHHHHHC
Confidence 99999999998878887656688999999887766544479999998 5788877668889986699999887
Q ss_pred -hccEEEEeCC-CCEEEecccccC
Q 024053 251 -FSLMLFAKKL-NDHNTTLPAISL 272 (273)
Q Consensus 251 -~deaL~LD~~-g~~~~~~~~~~~ 272 (273)
|||+|++|.+ | ..+|++++.+
T Consensus 160 g~de~l~ld~~~g-~v~E~~~sNl 182 (279)
T cd01557 160 GYDQALWLDGAHG-YVAEVGTMNI 182 (279)
T ss_pred CCCEEEEEcCCCC-EEEEeCcEEE
Confidence 8999999998 6 6778887654
No 14
>PRK13356 aminotransferase; Provisional
Probab=99.97 E-value=6.7e-31 Score=241.51 Aligned_cols=172 Identities=20% Similarity=0.258 Sum_probs=140.6
Q ss_pred eEEcCEEeeCCCeeeCcCCCceeeCCeEEeEEEEEEcCCCeEeeeChhhHHHHHHHhHhhcCCCCC-CHHHHHHHHHHHH
Q 024053 85 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTA 163 (273)
Q Consensus 85 ~w~nG~ivp~~~~~Is~~d~gl~YGdgvFEglrayr~~dG~i~lFrld~Hl~RL~~Sa~~L~ip~p-~~e~l~e~i~elv 163 (273)
+|+||++++.+.+.|++.|+||+||||||||+|+| +| ++|++++|++||.+||++|+|+.+ +.++|.+.+.+++
T Consensus 9 ~~~nG~~~~~~~~~i~~~drg~~yGdgvFEtir~~---~g--~~~~l~~Hl~RL~~Sa~~L~i~~~~~~~~l~~~i~~~i 83 (286)
T PRK13356 9 TFFDGEWHEGNVPIMGPADHAAWLGSTVFDGARAF---EG--VTPDLDLHCARVNRSAEALGLKPTVSAEEIEALAREGL 83 (286)
T ss_pred EEECCEEcchhhcccccccchhhhcceeEEEEEEe---cC--CCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999 99 568899999999999999999876 8999999999999
Q ss_pred HhcCCCCCCCCCceEEEEEEEEeeCCCc-ccCCCC-CeEEEEEEeecCCCccCCCCCeEEEEecCccccCCCC-cCchhh
Q 024053 164 LANKRWVPPPGKGSLYIRPLLVGSGPIL-GLAPAP-EYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGG-AGGVKA 240 (273)
Q Consensus 164 ~~n~~~vP~~~~~~lYIRp~v~~~~~~l-g~~p~~-~~~~~I~~~P~~~y~~~~~~gv~l~v~~~~~R~~p~g-~~~iKt 240 (273)
++|.. ..++|||++++++.+.. |..+.+ .+.+.+.+.+.+... .+|+++.++ ++.|..+.. .+++|+
T Consensus 84 ~~~~~------~~~~~ir~~v~rg~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~gv~l~~~-~~~r~~~~~~~~~~K~ 153 (286)
T PRK13356 84 KRFDP------DTALYIRPMYWAEDGFASGVAPDPESTRFALCLEEAPMPE---PTGFSLTLS-PFRRPTLEMAPTDAKA 153 (286)
T ss_pred HHcCC------CCcEEEEEEEEeccCcccCcCCCcCCceEEEEEEccCCCC---CCcEEEEEe-eeecCCCCCCCcccee
Confidence 99864 24689999999986644 443332 344555555443211 268999998 578876654 578998
Q ss_pred hccHHHHHHH--------hccEEEEeCCCCEEEecccccC
Q 024053 241 ISNYAPVSEY--------FSLMLFAKKLNDHNTTLPAISL 272 (273)
Q Consensus 241 ~gNY~~~l~a--------~deaL~LD~~g~~~~~~~~~~~ 272 (273)
++||+.++++ |||+||||.+|+ ..|++++.+
T Consensus 154 ~~nyl~~vla~~ea~~~g~deal~ld~~G~-v~E~~~sNl 192 (286)
T PRK13356 154 GCLYPNNARALREARSRGFDNALVLDMLGN-VAETATSNV 192 (286)
T ss_pred ccchHHHHHHHHHHHHcCCCEEEEECCCCC-EEEcCceEE
Confidence 8899999877 999999999995 677877654
No 15
>cd01558 D-AAT_like D-Alanine aminotransferase (D-AAT_like): D-amino acid aminotransferase catalyzes transamination between D-amino acids and their respective alpha-keto acids. It plays a major role in the synthesis of bacterial cell wall components like D-alanine and D-glutamate in addition to other D-amino acids. The enzyme like other members of this superfamily requires PLP as a cofactor. Members of this subgroup are found in all three forms of life.
Probab=99.97 E-value=4.5e-30 Score=233.43 Aligned_cols=169 Identities=14% Similarity=0.107 Sum_probs=137.4
Q ss_pred EEcCEEeeCCCeeeCcCCCceeeCCeEEeEEEEEEcCCCeEeeeChhhHHHHHHHhHhhcCCCCC-CHHHHHHHHHHHHH
Q 024053 86 FEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTAL 164 (273)
Q Consensus 86 w~nG~ivp~~~~~Is~~d~gl~YGdgvFEglrayr~~dG~i~lFrld~Hl~RL~~Sa~~L~ip~p-~~e~l~e~i~elv~ 164 (273)
|+||+++|.+++.|++.|+||+||||||||||++ +| .+|++++|++||.+||++|+|+.+ +.+++.+.+.++++
T Consensus 1 ~~nG~~~~~~~~~i~~~d~g~~~G~gvFEt~r~~---~g--~~~~l~~Hl~RL~~Sa~~l~~~~~~~~~~l~~~i~~~~~ 75 (270)
T cd01558 1 YLNGEYVPREEAKVSVFDRGFLFGDGVYEVIRVY---NG--KPFALDEHLDRLYRSAKELRIDIPYTREELKELIRELVA 75 (270)
T ss_pred CcCCeEeEHHHCccccccchhcccceEEEEEEEE---CC--EEecHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999 99 678999999999999999999977 89999999999999
Q ss_pred hcCCCCCCCCCceEEEEEEEEeeCCCcccCCC--CCeEEEEEEeecCCCccCC-CCCeEEEEecCccccCCCCcCchhhh
Q 024053 165 ANKRWVPPPGKGSLYIRPLLVGSGPILGLAPA--PEYTFLVFASPVGNYFKEG-LAPLNLYVEDEFHRATPGGAGGVKAI 241 (273)
Q Consensus 165 ~n~~~vP~~~~~~lYIRp~v~~~~~~lg~~p~--~~~~~~I~~~P~~~y~~~~-~~gv~l~v~~~~~R~~p~g~~~iKt~ 241 (273)
+|+. ...++|+.++++.+.+|+.+. ..+.+++++.|.++++... .+|+++.+++ +.|. ..+++|++
T Consensus 76 ~~~~-------~~~~~~~~~t~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~gv~~~~~~-~~~~---~~~~~K~~ 144 (270)
T cd01558 76 KNEG-------GEGDVYIQVTRGVGPRGHDFPKCVKPTVVIITQPLPLPPAELLEKGVRVITVP-DIRW---LRCDIKSL 144 (270)
T ss_pred HcCC-------CCceEEEEEEeCCCccCCCCCCCCCCEEEEEEEecCCCChhhhhcCeEEEEec-cccc---CCCCchhh
Confidence 9864 233444445677666666543 2567888888876443222 3689998884 5554 34689998
Q ss_pred ccHHHHHHH--------hccEEEEeCCCCEEEecccccC
Q 024053 242 SNYAPVSEY--------FSLMLFAKKLNDHNTTLPAISL 272 (273)
Q Consensus 242 gNY~~~l~a--------~deaL~LD~~g~~~~~~~~~~~ 272 (273)
||+.++++ +||+|+||.+|+ .+|++++.+
T Consensus 145 -ny~~~~~a~~~a~~~g~de~l~ld~~g~-v~E~~~sNi 181 (270)
T cd01558 145 -NLLNNVLAKQEAKEAGADEAILLDADGL-VTEGSSSNV 181 (270)
T ss_pred -ccHHHHHHHHHHHHcCCCEEEEEcCCCE-EEEcCcEEE
Confidence 99999876 899999999985 578887654
No 16
>PLN02845 Branched-chain-amino-acid aminotransferase-like protein
Probab=99.97 E-value=8.2e-30 Score=239.86 Aligned_cols=171 Identities=16% Similarity=0.165 Sum_probs=143.6
Q ss_pred eEEcCEEeeCCCeeeCcCCCceeeCCeEEeEEEEEEcCCCeEeeeChhhHHHHHHHhHhhcCCCCC-CHHHHHHHHHHHH
Q 024053 85 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTA 163 (273)
Q Consensus 85 ~w~nG~ivp~~~~~Is~~d~gl~YGdgvFEglrayr~~dG~i~lFrld~Hl~RL~~Sa~~L~ip~p-~~e~l~e~i~elv 163 (273)
+|+||+++|.+++.|++.|+||+||||||||||++ +| .+|++++|++||.+||++|+|+.| +.+++.+++.+++
T Consensus 43 ~~~nG~~v~~~~a~i~~~Drgl~~GdGvFETirv~---~G--~~~~le~Hl~RL~~Sa~~L~i~~p~~~~~l~~~i~~~i 117 (336)
T PLN02845 43 SVVGGITTDPAAMVIPLDDHMVHRGHGVFDTATIR---DG--HLYELDAHLDRFLRSAAKAKIPLPFDRATLRRILLQTV 117 (336)
T ss_pred EEECCEEccHHHCcccccccceeecceEEEEEEEE---CC--EEcCHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999 99 578999999999999999999987 8999999999999
Q ss_pred HhcCCCCCCCCCceEEEEEEEEeeCCCcccCCC--CCeEEEEEEeecCCCccCCCCCeEEEEecCccccCCCCcCchhhh
Q 024053 164 LANKRWVPPPGKGSLYIRPLLVGSGPILGLAPA--PEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAI 241 (273)
Q Consensus 164 ~~n~~~vP~~~~~~lYIRp~v~~~~~~lg~~p~--~~~~~~I~~~P~~~y~~~~~~gv~l~v~~~~~R~~p~g~~~iKt~ 241 (273)
++|+. .+.+||++++++.+.+++.+. ..+++++++.|...+ ....+|+++.++ ++.|.. ..++++|++
T Consensus 118 ~~~~~-------~~~~irl~vtrG~g~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~gv~l~~~-~~~~~~-~~~~~~Kt~ 187 (336)
T PLN02845 118 AASGC-------RNGSLRYWLSAGPGGFSLSPSGCSEPAFYAVVIEDTYA-QDRPEGVKVVTS-SVPIKP-PQFATVKSV 187 (336)
T ss_pred HhcCC-------CcEEEEEEEEeCCCCCCCCCCCCCCCEEEEEEcccccc-ccccCCeEEEEe-eeeecC-Cccccchhh
Confidence 99875 578999999998766666543 367888888775432 222478998888 455533 336789998
Q ss_pred ccHHHHHHH--------hccEEEEeCCCCEEEecccccC
Q 024053 242 SNYAPVSEY--------FSLMLFAKKLNDHNTTLPAISL 272 (273)
Q Consensus 242 gNY~~~l~a--------~deaL~LD~~g~~~~~~~~~~~ 272 (273)
||+.++++ |||+||||.+|+ .+||+++.+
T Consensus 188 -nyl~~vla~~eA~~~G~deaLlln~~G~-V~Egt~sNi 224 (336)
T PLN02845 188 -NYLPNALSQMEAEERGAFAGIWLDEEGF-VAEGPNMNV 224 (336)
T ss_pred -hhHHHHHHHHHHHHcCCCEEEEECCCCc-EEEcCcceE
Confidence 99999877 999999999984 678887764
No 17
>PRK06680 D-amino acid aminotransferase; Reviewed
Probab=99.97 E-value=1e-29 Score=233.80 Aligned_cols=169 Identities=13% Similarity=0.128 Sum_probs=141.1
Q ss_pred eEEcCEEeeCCCeeeCcCCCceeeCCeEEeEEEEEEcCCCeEeeeChhhHHHHHHHhHhhcCCCCC-CHHHHHHHHHHHH
Q 024053 85 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTA 163 (273)
Q Consensus 85 ~w~nG~ivp~~~~~Is~~d~gl~YGdgvFEglrayr~~dG~i~lFrld~Hl~RL~~Sa~~L~ip~p-~~e~l~e~i~elv 163 (273)
+|+||+++|.+++.|++.|+||+||||||||+|+| +| ++|++++|++||.+||++|+|+.| +.++|.+++.+++
T Consensus 5 ~~~nG~~~~~~~~~i~~~drg~~yGdGvFEt~r~~---~g--~~~~l~~Hl~RL~~Sa~~L~i~~~~~~~~l~~~i~~~~ 79 (286)
T PRK06680 5 AYVNGRYVNHREARVHIEDRGFQFADGIYEVCAVR---DG--KLVDLDRHLARLFRSLGEIRIAPPMTRAELVEVLRELI 79 (286)
T ss_pred EEECCEEEEHHHCcccccccccceeeEEEEEEEEE---CC--EEechHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999 99 568889999999999999999977 8999999999999
Q ss_pred HhcCCCCCCCCCceEEEEEEEEeeCCCcccC-CC--CCeEEEEEEeecCCCc-cCC-CCCeEEEEecCccccCCCCcCch
Q 024053 164 LANKRWVPPPGKGSLYIRPLLVGSGPILGLA-PA--PEYTFLVFASPVGNYF-KEG-LAPLNLYVEDEFHRATPGGAGGV 238 (273)
Q Consensus 164 ~~n~~~vP~~~~~~lYIRp~v~~~~~~lg~~-p~--~~~~~~I~~~P~~~y~-~~~-~~gv~l~v~~~~~R~~p~g~~~i 238 (273)
++|+. ..++||+++++|.+..|.. +. .++.++|++.|.++|. ... .+|+++.+.+ ..|. ..+++
T Consensus 80 ~~~~~-------~~~~lr~~vtrG~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~gv~~~~~~-~~~~---~~~~~ 148 (286)
T PRK06680 80 RRNRV-------REGLVYLQVTRGVARRDHVFPAADVKPSVVVFAKSVDFARPAAAAETGIKVITVP-DNRW---KRCDI 148 (286)
T ss_pred HHcCC-------CceEEEEEEEeCCCCCCCCCCCCCCCcEEEEEEEeccccCChhHHhCCeEEEEec-CCCC---CCCCc
Confidence 99875 4678999999887666654 22 3678999999887532 212 3789888774 3342 24679
Q ss_pred hhhccHHHHHHH--------hccEEEEeCCCCEEEecccccC
Q 024053 239 KAISNYAPVSEY--------FSLMLFAKKLNDHNTTLPAISL 272 (273)
Q Consensus 239 Kt~gNY~~~l~a--------~deaL~LD~~g~~~~~~~~~~~ 272 (273)
|++ ||+.++++ |||+|||| +| ...|++++.+
T Consensus 149 Ks~-nyl~~vla~~eA~~~g~dd~l~ld-~g-~v~E~~~sN~ 187 (286)
T PRK06680 149 KSV-GLLPNVLAKQAAKEAGAQEAWMVD-DG-FVTEGASSNA 187 (286)
T ss_pred chh-ccHHHHHHHHHHHHCCCCEEEEec-CC-EEEEcCcEEE
Confidence 999 99999877 99999999 76 6788887754
No 18
>COG0115 IlvE Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.97 E-value=1.5e-29 Score=232.50 Aligned_cols=175 Identities=33% Similarity=0.471 Sum_probs=147.0
Q ss_pred eEEcCEEeeCCCeeeCcCCCceeeCCeEEeEEEEEEcCCCeEeeeChhhHHHHHHHhHhhcCCCCC-CHHHHHHHHHHHH
Q 024053 85 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTA 163 (273)
Q Consensus 85 ~w~nG~ivp~~~~~Is~~d~gl~YGdgvFEglrayr~~dG~i~lFrld~Hl~RL~~Sa~~L~ip~p-~~e~l~e~i~elv 163 (273)
+|.||+++|.+++++++.|+++||||+||||+|+| +| .+||+++|++||++||++|+||.| +.+++.+...+++
T Consensus 4 ~~~~g~~~~~~~~~~~~~~~~~~~g~~vFE~~r~~---~g--~~~~l~~H~~RL~~Sa~~l~~~~~~~~~~~~~~~~~~~ 78 (284)
T COG0115 4 IWVNGELVPEEDAKLSVLDRGLHYGDGVFETLRAY---NG--KLFRLDEHLARLKRSAKRLGLPRPESEEEIELLIQLLL 78 (284)
T ss_pred EeECCEEccCcccccCcccceeccccceeEEEEEe---CC--cccChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999 78 789999999999999999999998 7777777777777
Q ss_pred HhcCCCCCCCCCceEEEEEEEEeeCCCcccCCCCCeEEEEEEeecCCCccCC--CCCeEEEEecCccccCCCCcCchhhh
Q 024053 164 LANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEG--LAPLNLYVEDEFHRATPGGAGGVKAI 241 (273)
Q Consensus 164 ~~n~~~vP~~~~~~lYIRp~v~~~~~~lg~~p~~~~~~~I~~~P~~~y~~~~--~~gv~l~v~~~~~R~~p~g~~~iKt~ 241 (273)
+.++. . ..+|+||+++++++.+|+.+..++.+.++++|+++|+... .+|+++.++ +..|..+.+++..|.+
T Consensus 79 ~~~~~-~-----~~~y~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~k~ 151 (284)
T COG0115 79 AKNNL-V-----PGLYIRPLVRGGGGGLGVRDATEPTLIVAASPVGAYLKGGRLEKGVVLVIS-SPVRRAPPGPGAAKKT 151 (284)
T ss_pred HhhCC-C-----CceEEEEEEEeecCCCCcCCCCccEEEEEEEecccccCcccccCCeEEEEe-ehhhccCCCcchhhhh
Confidence 66653 2 2399999999999999998866899999999999999876 368877777 3456665544444444
Q ss_pred ccHHHHHHH--------hccEEEEeCCCCEEEecccccC
Q 024053 242 SNYAPVSEY--------FSLMLFAKKLNDHNTTLPAISL 272 (273)
Q Consensus 242 gNY~~~l~a--------~deaL~LD~~g~~~~~~~~~~~ 272 (273)
+||++++++ +||+|++|.+| ..+||+++.+
T Consensus 152 ~~y~~~~~a~~~A~~~G~~eal~~~~~G-~V~Eg~~sNv 189 (284)
T COG0115 152 GNYLSSVLAKREAKAAGADEALLLDEDG-YVTEGAGSNV 189 (284)
T ss_pred cccHHHHHHHHHHHHCCCCEEEEecCCC-eEEEcCcceE
Confidence 599999887 89999999998 5567776653
No 19
>PRK07650 4-amino-4-deoxychorismate lyase; Provisional
Probab=99.96 E-value=5e-29 Score=228.65 Aligned_cols=170 Identities=21% Similarity=0.207 Sum_probs=140.1
Q ss_pred eEEcCEEeeCCCeeeCcCCCceeeCCeEEeEEEEEEcCCCeEeeeChhhHHHHHHHhHhhcCCCCC-CHHHHHHHHHHHH
Q 024053 85 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTA 163 (273)
Q Consensus 85 ~w~nG~ivp~~~~~Is~~d~gl~YGdgvFEglrayr~~dG~i~lFrld~Hl~RL~~Sa~~L~ip~p-~~e~l~e~i~elv 163 (273)
+|+||+++|..++.+++.|+||+||||||||||+| +| .+|++++|++||.+||+.|+|+.+ +.+++.+.+.+++
T Consensus 2 ~~~nG~~~~~~~~~v~~~drg~~~GdgvFEt~r~~---~g--~~~~l~~Hl~RL~~Sa~~l~~~~~~~~~~l~~~l~~~~ 76 (283)
T PRK07650 2 IYVNGQYVEEEEARISPFDHGYLYGLGVFETFRIY---NG--HPFLLDDHYDRLNDALDTLQIEWTMTKDEVLLILKNLL 76 (283)
T ss_pred EEECCEEeEHHHCeecccccccccccEEEEEEEEE---CC--EEEcHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999 99 568899999999999999999987 8999999999999
Q ss_pred HhcCCCCCCCCCceEEEEEEEEeeCCCcccCCC--CCeEEEEEEeecCCCccC-CCCCeEEEEecCccccCCCCcCchhh
Q 024053 164 LANKRWVPPPGKGSLYIRPLLVGSGPILGLAPA--PEYTFLVFASPVGNYFKE-GLAPLNLYVEDEFHRATPGGAGGVKA 240 (273)
Q Consensus 164 ~~n~~~vP~~~~~~lYIRp~v~~~~~~lg~~p~--~~~~~~I~~~P~~~y~~~-~~~gv~l~v~~~~~R~~p~g~~~iKt 240 (273)
++++. ...+||++++++.+.+|+.+. ..++++++..|..+.... ...++ +. ...|..++..+++|+
T Consensus 77 ~~~~~-------~~~~iRl~v~rg~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~Kt 145 (283)
T PRK07650 77 EKNGL-------ENAYVRFNVSAGIGEIGLQTEMYEEPTVIVYMKPLAPPGLPAEKEGV---VL-KQRRNTPEGAFRLKS 145 (283)
T ss_pred HhcCC-------CcEEEEEEEEeCCCCCCCCCCCCCCCEEEEEEEcCCCCChhhcCeEE---EE-EEEecCCCCCcchhH
Confidence 98764 578999999998777777653 367888888887542221 12333 23 245666667889999
Q ss_pred hccHHHHHHH--------hccEEEEeCCCCEEEecccccC
Q 024053 241 ISNYAPVSEY--------FSLMLFAKKLNDHNTTLPAISL 272 (273)
Q Consensus 241 ~gNY~~~l~a--------~deaL~LD~~g~~~~~~~~~~~ 272 (273)
+ ||+.++++ +||+|+||.+| ..+|++.+.+
T Consensus 146 ~-~y~~~v~a~~~a~~~g~de~llln~~G-~v~E~s~sNi 183 (283)
T PRK07650 146 H-HYLNNILGKREIGNDPNKEGIFLTEEG-YVAEGIVSNL 183 (283)
T ss_pred H-hHHHHHHHHHHHHHcCCCeEEEECCCC-eEEEcCceEE
Confidence 8 99999876 89999999988 5677776654
No 20
>TIGR01121 D_amino_aminoT D-amino acid aminotransferase. Specificity is broad for various D-amino acids, and differs among members of the family; the family is designated equivalog, but with this caveat attached.
Probab=99.96 E-value=9.7e-29 Score=226.09 Aligned_cols=169 Identities=11% Similarity=0.091 Sum_probs=136.1
Q ss_pred eEEcCEEeeCCCeeeCcCCCceeeCCeEEeEEEEEEcCCCeEeeeChhhHHHHHHHhHhhcCCCCC-CHHHHHHHHHHHH
Q 024053 85 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTA 163 (273)
Q Consensus 85 ~w~nG~ivp~~~~~Is~~d~gl~YGdgvFEglrayr~~dG~i~lFrld~Hl~RL~~Sa~~L~ip~p-~~e~l~e~i~elv 163 (273)
+|+||+++|.+++.|++.|+||+||||||||||+| +| .+|++++|++||++||++|+|+.+ +.|.+.+.|.+++
T Consensus 2 ~~~nG~~~~~~~~~i~~~drgl~yGdgvFEtir~~---~g--~~~~l~~H~~RL~~Sa~~l~i~~~~~~~~l~~~i~~~~ 76 (276)
T TIGR01121 2 VLWNGQLVEREEAKIDIEDRGYQFGDGVYEVIRVY---NG--KLFTVNEHIDRLYASAAKIRIDIPYTKEELHQLLHELV 76 (276)
T ss_pred EEECCEEeEHHHCeecccccccccccEEEEEEEEE---CC--EEeChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999 99 678999999999999999999977 8999999999999
Q ss_pred HhcCCCCCCCCCceEEEEEEEEeeCCCcccCCC---CCeEEEEEEeecCCCccCCCCCeEEEEecCccccCCCCcCchhh
Q 024053 164 LANKRWVPPPGKGSLYIRPLLVGSGPILGLAPA---PEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKA 240 (273)
Q Consensus 164 ~~n~~~vP~~~~~~lYIRp~v~~~~~~lg~~p~---~~~~~~I~~~P~~~y~~~~~~gv~l~v~~~~~R~~p~g~~~iKt 240 (273)
++|+. .+.+||+.++++.+..|...+ ..+.++++..|.........+|+++.+.. ..|.. .+++|+
T Consensus 77 ~~~~~-------~~~~irl~~~rg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~~~---~~~~K~ 145 (276)
T TIGR01121 77 EKNNL-------NTGHVYFQVTRGVAPRNHQFPAGTVKPVITAYTKEVPRPEENLEKGVKAITVE-DIRWL---RCDIKS 145 (276)
T ss_pred HhcCC-------CceEEEEEEEcCCCCcCCCCCCCCCCcEEEEEEecccCChhHHhcCeEEEEec-CCCcc---CCCcch
Confidence 99875 567889888887655554422 24566777776653222223688877663 34432 467998
Q ss_pred hccHHHHHHH--------hccEEEEeCCCCEEEecccccC
Q 024053 241 ISNYAPVSEY--------FSLMLFAKKLNDHNTTLPAISL 272 (273)
Q Consensus 241 ~gNY~~~l~a--------~deaL~LD~~g~~~~~~~~~~~ 272 (273)
. ||+.++++ |||+||++ +| ...||+++.+
T Consensus 146 ~-nyl~~vla~~eA~~~g~de~l~~~-~g-~v~E~~~sNi 182 (276)
T TIGR01121 146 L-NLLGNVLAKQEAHEKGAYEAILHR-GG-TVTEGSSSNV 182 (276)
T ss_pred h-hhHHHHHHHHHHHHcCCCEEEEec-CC-eEEecCceeE
Confidence 8 99999877 99999995 55 5788888764
No 21
>TIGR03461 pabC_Proteo aminodeoxychorismate lyase. Members of this protein family are aminodeoxychorismate lyase (ADC lyase), EC 4.1.3.38, the PabC protein of PABA biosynthesis. PABA (para-aminobenzoate) is a precursor of folate, needed for de novo purine biosynthesis. This enzyme is a pyridoxal-phosphate-binding protein in the class IV aminotransferase family (pfam01063).
Probab=99.96 E-value=1.8e-28 Score=222.08 Aligned_cols=166 Identities=20% Similarity=0.221 Sum_probs=135.8
Q ss_pred EEcCEEeeCCCeeeCcCCCceeeCCeEEeEEEEEEcCCCeEeeeChhhHHHHHHHhHhhcCCCCCCHHHHHHHHHHHHHh
Q 024053 86 FEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALA 165 (273)
Q Consensus 86 w~nG~ivp~~~~~Is~~d~gl~YGdgvFEglrayr~~dG~i~lFrld~Hl~RL~~Sa~~L~ip~p~~e~l~e~i~elv~~ 165 (273)
|+||+. ++.|++.|+||+||||||||+|++ +| .+|++++|++||.+||+.|+|+.|+.+++.+++.++++.
T Consensus 1 ~~nG~~----~~~i~~~d~g~~~G~gvFEt~r~~---~G--~~~~l~~Hl~RL~~Sa~~l~~~~~~~~~l~~~~~~~~~~ 71 (261)
T TIGR03461 1 WVNGVL----QTQISVSDRGLQYGDGCFTTAKVR---NG--KIELLDLHLERLQDAAARLGIPLPDWDALREEMAQLAAG 71 (261)
T ss_pred CcCCcc----cCccCcccccccccceeEEEEEEE---CC--EeccHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHh
Confidence 789995 688999999999999999999999 99 568899999999999999999998999999999999987
Q ss_pred cCCCCCCCCCceEEEEEEEEeeCCCcccCCC--CCeEEEEEEeecCCCccCC-CCCeEEEEecCccccCCCCcCchhhhc
Q 024053 166 NKRWVPPPGKGSLYIRPLLVGSGPILGLAPA--PEYTFLVFASPVGNYFKEG-LAPLNLYVEDEFHRATPGGAGGVKAIS 242 (273)
Q Consensus 166 n~~~vP~~~~~~lYIRp~v~~~~~~lg~~p~--~~~~~~I~~~P~~~y~~~~-~~gv~l~v~~~~~R~~p~g~~~iKt~g 242 (273)
+. +++||++++++.+..|+.++ ..+.+++.+.|..+++... .+|+++.+++ +.+..+..+.++|++
T Consensus 72 ~~---------~~~ir~~v~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~Kt~- 140 (261)
T TIGR03461 72 YS---------LGVLKVIISRGSGGRGYSPPGCSDPTRIISVSPYPAHYSAWQQQGIRLGVSP-VRLGRNPLLAGIKHL- 140 (261)
T ss_pred CC---------CeEEEEEEecCCCCCCCCCCCCCCCcEEEEeccCcccChhHhcCCEEEEEec-cccCCCCCCcCcccc-
Confidence 63 47899999987665565543 3567888888887655433 3799999884 444433347899998
Q ss_pred cHHHHHHH--------hccEEEEeCCCCEEEecccccC
Q 024053 243 NYAPVSEY--------FSLMLFAKKLNDHNTTLPAISL 272 (273)
Q Consensus 243 NY~~~l~a--------~deaL~LD~~g~~~~~~~~~~~ 272 (273)
||+.++++ |||+||+|.+| ..+|++++.+
T Consensus 141 ~y~~~~~a~~~A~~~g~de~llln~~g-~v~E~s~sNi 177 (261)
T TIGR03461 141 NRLEQVLIKAELENSEADEALVLDTDG-NVVECTAANI 177 (261)
T ss_pred ccHHHHHHHHHhhhcCCCEEEEECCCC-CEEEeccEEE
Confidence 99998876 89999999998 5566776643
No 22
>PRK07849 4-amino-4-deoxychorismate lyase; Provisional
Probab=99.96 E-value=2.9e-28 Score=225.04 Aligned_cols=170 Identities=18% Similarity=0.147 Sum_probs=138.8
Q ss_pred eEEcC-----EEeeCCCeeeCcCCCceeeCCeEEeEEEEEEcCCCeEeeeChhhHHHHHHHhHhhcCCCCCCHHHHHHHH
Q 024053 85 YFEKG-----RLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAV 159 (273)
Q Consensus 85 ~w~nG-----~ivp~~~~~Is~~d~gl~YGdgvFEglrayr~~dG~i~lFrld~Hl~RL~~Sa~~L~ip~p~~e~l~e~i 159 (273)
+|+|| +++|.+++.|++.|+|++||||||||||++ +| .+|.+++|++||++||++|+|+.|+.++|.+++
T Consensus 9 ~~~ng~~~~~~~~~~~~a~i~~~drg~~~GdgvFEt~rv~---~g--~i~~l~~Hl~RL~~Sa~~l~i~~~~~~~l~~~i 83 (292)
T PRK07849 9 VTLDPYGGSERVHDPSAPLLHADDLAAVRGDGVFETLLVR---DG--RPCNLEAHLERLARSAALLDLPEPDLDRWRRAV 83 (292)
T ss_pred EEECCCCccceEechHHCCccchhcchhccceEEEEEEEE---CC--EECCHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 89999 999999999999999999999999999999 99 467789999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCCceEEEEEEEEeeCCCcccCCCCCeEEEEEEeecCCCccC-CCCCeEEEEecCccc------cCC
Q 024053 160 KQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKE-GLAPLNLYVEDEFHR------ATP 232 (273)
Q Consensus 160 ~elv~~n~~~vP~~~~~~lYIRp~v~~~~~~lg~~p~~~~~~~I~~~P~~~y~~~-~~~gv~l~v~~~~~R------~~p 232 (273)
.++++++.. .....+||++++++.+..+ .+.+++.+.|....... ..+|+++.+++ ..+ ..|
T Consensus 84 ~~~v~~~~~-----~~~~~~iRl~v~~g~~~~~-----~~~~~i~~~p~~~~~~~~~~~gv~l~~~~-~~~~~~~~~~~p 152 (292)
T PRK07849 84 ELAIEEWRA-----PEDEAALRLVYSRGRESGG-----APTAWVTVSPVPERVARARREGVSVITLD-RGYPSDAAERAP 152 (292)
T ss_pred HHHHHHhcC-----CCCCeEEEEEEeCCCCCCC-----CCeEEEEEeecCccchhhccCCeEEEEEe-ccccCcccccCc
Confidence 999998731 1146899999988765432 56788888887643222 24789998874 222 234
Q ss_pred CCcCchhhhccHHHHHHH--------hccEEEEeCCCCEEEecccccC
Q 024053 233 GGAGGVKAISNYAPVSEY--------FSLMLFAKKLNDHNTTLPAISL 272 (273)
Q Consensus 233 ~g~~~iKt~gNY~~~l~a--------~deaL~LD~~g~~~~~~~~~~~ 272 (273)
..++++|++ ||+.++++ +||+||||.+| ..+||+++.+
T Consensus 153 ~~~~~~Kt~-ny~~~i~a~~~A~~~g~dd~L~ld~~G-~v~E~s~~Ni 198 (292)
T PRK07849 153 WLLAGAKTL-SYAVNMAALRYAARRGADDVIFTSTDG-YVLEGPTSTV 198 (292)
T ss_pred ccccccchh-hhHHHHHHHHHHHHcCCCEEEEEcCCC-cEEECCceEE
Confidence 457889998 99998876 99999999998 6677776644
No 23
>PRK12400 D-amino acid aminotransferase; Reviewed
Probab=99.96 E-value=3.2e-28 Score=224.30 Aligned_cols=172 Identities=15% Similarity=0.046 Sum_probs=134.5
Q ss_pred cceEEcCEEeeCC--CeeeCcCCCceeeCCeEEeEEEEEEcCCCeEeeeChhhHHHHHHHhHhhcCCCCC-CHHHHHHHH
Q 024053 83 NDYFEKGRLSRYG--KIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAV 159 (273)
Q Consensus 83 ~~~w~nG~ivp~~--~~~Is~~d~gl~YGdgvFEglrayr~~dG~i~lFrld~Hl~RL~~Sa~~L~ip~p-~~e~l~e~i 159 (273)
.-+|+||+++|.+ ++.|++.||||+||||||||||+| +| .+|++++|++||.+||++|+|+.| +.+++.+++
T Consensus 5 ~~~~~ng~~v~~~~~~~~i~~~drgl~yGdgvFEtir~~---~G--~~~~l~~Hl~RL~~Sa~~L~i~~p~~~~~l~~~l 79 (290)
T PRK12400 5 RFVLWNDAVIDTTKQKTYIELEERGLQFGDGVYEVIRLY---KG--NFHLLDPHITRLYRSMEEIELTLPFSKAELITLL 79 (290)
T ss_pred cEEEECCEEechHHcCceeccccchhhhcceEEEEEEEE---CC--EecccHHHHHHHHHHHHHhCCCCCCCHHHHHHHH
Confidence 3489999999999 455999999999999999999999 99 567889999999999999999987 899999999
Q ss_pred HHHHHhcCCCCCCCCCceEEEEEEEEeeCCCcccCCC--CCeEEEEEEeecCCCccCCCCCeEEEEecCccccCCCCcCc
Q 024053 160 KQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPA--PEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGG 237 (273)
Q Consensus 160 ~elv~~n~~~vP~~~~~~lYIRp~v~~~~~~lg~~p~--~~~~~~I~~~P~~~y~~~~~~gv~l~v~~~~~R~~p~g~~~ 237 (273)
.+++++|+. ....+||+++++|.+..|..++ ..+++++++.+...+.....+|+++...+ ..| ...++
T Consensus 80 ~~~~~~~~~------~~~~~iri~v~rG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~---~~~~~ 149 (290)
T PRK12400 80 YKLIENNNF------HEDGTIYLQVSRGVQARTHTFSYDVPPTIYAYITKKERPALWIEYGVRAISEP-DTR---WLRCD 149 (290)
T ss_pred HHHHHhcCC------CCCEEEEEEEEeCCCCCCCCCCCCCCcEEEEEEecccCchhHHhcCcEEEECC-CCC---ccCCC
Confidence 999999863 1367899999998776666543 24567666655322211113688877653 222 22467
Q ss_pred hhhhccHHHHHHH--------hccEEEEeCCCCEEEecccccC
Q 024053 238 VKAISNYAPVSEY--------FSLMLFAKKLNDHNTTLPAISL 272 (273)
Q Consensus 238 iKt~gNY~~~l~a--------~deaL~LD~~g~~~~~~~~~~~ 272 (273)
+|++ ||+.++++ |||+|||| +| ...|++.+.+
T Consensus 150 ~Kt~-nyl~~vla~~ea~~~g~deaL~l~-~g-~v~E~t~sNi 189 (290)
T PRK12400 150 IKSL-NLLPNILAATKAERKGCKEALFVR-NG-TVTEGSHSNF 189 (290)
T ss_pred Cccc-ccHHHHHHHHHHHHcCCCEEEEEc-CC-EEEEcCceEE
Confidence 8998 99999887 89999996 55 6888887654
No 24
>PRK06092 4-amino-4-deoxychorismate lyase; Reviewed
Probab=99.96 E-value=4.2e-28 Score=220.63 Aligned_cols=167 Identities=20% Similarity=0.182 Sum_probs=134.8
Q ss_pred eEEcCEEeeCCCeeeCcCCCceeeCCeEEeEEEEEEcCCCeEeeeChhhHHHHHHHhHhhcCCCCCCHHHHHHHHHHHHH
Q 024053 85 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTAL 164 (273)
Q Consensus 85 ~w~nG~ivp~~~~~Is~~d~gl~YGdgvFEglrayr~~dG~i~lFrld~Hl~RL~~Sa~~L~ip~p~~e~l~e~i~elv~ 164 (273)
+|+||++ ++.|++.|+||+||||||||||++ +| .+|++++|++||++||++|+||.++.+.+.+.+.+++.
T Consensus 2 ~~~nG~~----~~~i~~~d~g~~~GdgvFEtir~~---~g--~~~~l~~Hl~RL~~Sa~~l~~~~~~~~~~~~~l~~~~~ 72 (268)
T PRK06092 2 FWINGQP----QESLSVSDRSTQYGDGCFTTARVR---DG--QVSLLSRHLQRLQDACERLAIPLDDWAQLEQEMKQLAA 72 (268)
T ss_pred EEECCcC----cCccCccccccccccceeeEEEEE---CC--eeccHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Confidence 6899996 578999999999999999999999 99 56888999999999999999998887888888888873
Q ss_pred hcCCCCCCCCCceEEEEEEEEeeCCCcccCCCC--CeEEEEEEeecCCCccCC-CCCeEEEEecCccccCCCCcCchhhh
Q 024053 165 ANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAP--EYTFLVFASPVGNYFKEG-LAPLNLYVEDEFHRATPGGAGGVKAI 241 (273)
Q Consensus 165 ~n~~~vP~~~~~~lYIRp~v~~~~~~lg~~p~~--~~~~~I~~~P~~~y~~~~-~~gv~l~v~~~~~R~~p~g~~~iKt~ 241 (273)
. . .+.+||++++++.+..|+.++. ++.++|++.|..++..+. .+|+++.+++ ..+..+..+.++|++
T Consensus 73 ~--~-------~~~~iri~v~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~gv~l~~~~-~~~~~~~~~~~~Kt~ 142 (268)
T PRK06092 73 E--L-------ENGVLKVIISRGSGGRGYSPAGCAAPTRILSVSPYPAHYSRWREQGITLALCP-TRLGRNPLLAGIKHL 142 (268)
T ss_pred h--C-------CCeEEEEEEEccCCCCCCCCCCCCCCeEEEEeccCCccChhHhhCCEEEEEec-cccCCCCCccCcchh
Confidence 2 1 3578999999987767776543 568888888887655432 3799999884 444333347789997
Q ss_pred ccHHHHHHH--------hccEEEEeCCCCEEEecccccC
Q 024053 242 SNYAPVSEY--------FSLMLFAKKLNDHNTTLPAISL 272 (273)
Q Consensus 242 gNY~~~l~a--------~deaL~LD~~g~~~~~~~~~~~ 272 (273)
||+.++++ |||+|++|.+| ..+||+++.+
T Consensus 143 -ny~~~~~a~~~A~~~g~de~l~l~~~g-~v~E~s~sNi 179 (268)
T PRK06092 143 -NRLEQVLIRAELEQTEADEALVLDSEG-WVIECCAANL 179 (268)
T ss_pred -hhHHHHHHHHHHHhcCCCEEEEECCCC-CEEEccceEE
Confidence 99999876 89999999998 5567777654
No 25
>cd01559 ADCL_like ADCL_like: 4-Amino-4-deoxychorismate lyase: is a member of the fold-type IV of PLP dependent enzymes that converts 4-amino-4-deoxychorismate (ADC) to p-aminobenzoate and pyruvate. Based on the information available from the crystal structure, most members of this subgroup are likely to function as dimers. The enzyme from E.Coli, the structure of which is available, is a homodimer that is folded into a small and a larger domain. The coenzyme pyridoxal 5; -phosphate resides at the interface of the two domains that is linked by a flexible loop. Members of this subgroup are found in Eukaryotes and bacteria.
Probab=99.95 E-value=2e-27 Score=214.01 Aligned_cols=153 Identities=25% Similarity=0.288 Sum_probs=127.7
Q ss_pred CCceeeCCeEEeEEEEEEcCCCeEeeeChhhHHHHHHHhHhhcCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE
Q 024053 103 SGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRP 182 (273)
Q Consensus 103 d~gl~YGdgvFEglrayr~~dG~i~lFrld~Hl~RL~~Sa~~L~ip~p~~e~l~e~i~elv~~n~~~vP~~~~~~lYIRp 182 (273)
|+||+||||||||||+| +| .+|++++|++||.+||++|+||+++.+++.+++.+++++|+. ...+||+
T Consensus 1 Drg~~~GdgvFEt~~~~---~g--~~~~l~~Hl~RL~~Sa~~l~~~~~~~~~l~~~i~~~i~~~~~-------~~~~ir~ 68 (249)
T cd01559 1 DRGFAYGDGVFETMRAL---DG--RLFLLDAHLARLERSARRLGIPEPDLPRLRAALESLLAANDI-------DEGRIRL 68 (249)
T ss_pred CCcccccceeEEEEEEE---CC--EEccHHHHHHHHHHHHHhcCcCCCCHHHHHHHHHHHHHhCCC-------CceEEEE
Confidence 79999999999999999 99 568899999999999999999955999999999999999875 5689999
Q ss_pred EEEeeCCCcccCCC--CCeEEEEEEeecCCCccCCCCCeEEEEecCccccCCCCcCchhhhccHHHHHHH--------hc
Q 024053 183 LLVGSGPILGLAPA--PEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVSEY--------FS 252 (273)
Q Consensus 183 ~v~~~~~~lg~~p~--~~~~~~I~~~P~~~y~~~~~~gv~l~v~~~~~R~~p~g~~~iKt~gNY~~~l~a--------~d 252 (273)
+++++.+..|+.+. .++.++|++.|... ....+|+++.++ ++.|..+..++++|++ ||+.++++ +|
T Consensus 69 ~v~rg~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~gv~l~~~-~~~~~~~~~~~~~Kt~-ny~~~~~a~~~a~~~g~d 144 (249)
T cd01559 69 ILSRGPGGRGYAPSVCPGPALYVSVIPLPP--AWRQDGVRLITC-PVRLGEQPLLAGLKHL-NYLENVLAKREARDRGAD 144 (249)
T ss_pred EEecCCCCCCCCCCCCCCCEEEEEeccCCH--HHHhCCcEEEEc-ccccCCCCCCCCcchh-hhHHHHHHHHHHHhcCCC
Confidence 99988766666543 36788888887653 222378999998 4677666679999997 99999877 89
Q ss_pred cEEEEeCCCCEEEecccccC
Q 024053 253 LMLFAKKLNDHNTTLPAISL 272 (273)
Q Consensus 253 eaL~LD~~g~~~~~~~~~~~ 272 (273)
|+||+|.+|+ .+||+++.+
T Consensus 145 e~l~l~~~g~-v~E~~~~Ni 163 (249)
T cd01559 145 EALFLDTDGR-VIEGTASNL 163 (249)
T ss_pred EEEEEcCCCC-EEEecceEE
Confidence 9999999985 567777654
No 26
>PRK09266 hypothetical protein; Provisional
Probab=99.94 E-value=2.3e-26 Score=209.26 Aligned_cols=160 Identities=17% Similarity=0.121 Sum_probs=129.3
Q ss_pred eEEcCEEeeCCCeeeCcCCCceeeCCeEEeEEEEEEcCCCeEeeeChhhHHHHHHHhHhhcCCCCCCHHHHHHHHHHHHH
Q 024053 85 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTAL 164 (273)
Q Consensus 85 ~w~nG~ivp~~~~~Is~~d~gl~YGdgvFEglrayr~~dG~i~lFrld~Hl~RL~~Sa~~L~ip~p~~e~l~e~i~elv~ 164 (273)
+|+||+++|.+++.+ |++||||||||||++ +| .+|++++|++||.+||++|+++.++.+++.+++.++++
T Consensus 5 ~~~nG~~~~~~~a~~-----~~~~GdgvFETir~~---~g--~~~~l~~Hl~RL~~sa~~l~~~~~~~~~l~~~l~~~~~ 74 (266)
T PRK09266 5 IELNGRPATAEDLAA-----LALANYGHFTSMQVR---DG--RVRGLDLHLQRLRRASRELFGAALDDDRVRAQLRAALA 74 (266)
T ss_pred EEECCEECCHHHhhh-----HhhccceEEEEEEEE---CC--EEcCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh
Confidence 799999999998874 999999999999999 99 56889999999999999997765689999999999994
Q ss_pred hcCCCCCCCCCceEEEEEEEEeeCCCcccCCC-CCeEEEEEEeecCCCccCCCCCeEEEEecCccccCCCCcCchhhhcc
Q 024053 165 ANKRWVPPPGKGSLYIRPLLVGSGPILGLAPA-PEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISN 243 (273)
Q Consensus 165 ~n~~~vP~~~~~~lYIRp~v~~~~~~lg~~p~-~~~~~~I~~~P~~~y~~~~~~gv~l~v~~~~~R~~p~g~~~iKt~gN 243 (273)
. +. .+.|||++++++.+.+|..+. .++++++.+.|..+.. .+|+++.++ ++.|. ..++|+. |
T Consensus 75 ~-~~-------~~~~ir~~v~r~~g~~~~~~~~~~~~~~i~~~~~~~~~---~~~v~l~~~-~~~r~----~~~~K~~-~ 137 (266)
T PRK09266 75 A-GP-------ADASVRVTVFAPDFDFRNPLADVAPDVLVATSPPADGP---AGPLRLQSV-PYERE----LPHIKHV-G 137 (266)
T ss_pred c-CC-------CcEEEEEEEEecCcccCCCCCCCCceEEEEEecCCcCC---CCCeEEEEE-Eeccc----CCCCCCC-C
Confidence 3 32 468999999987666665433 3578888887754332 368988888 45664 3569999 7
Q ss_pred HHHHHHH--------hccEEEEeCCCCEEEecccccC
Q 024053 244 YAPVSEY--------FSLMLFAKKLNDHNTTLPAISL 272 (273)
Q Consensus 244 Y~~~l~a--------~deaL~LD~~g~~~~~~~~~~~ 272 (273)
|+.++++ |||+|+||.+| ...||+.+.+
T Consensus 138 ~l~~vla~~~a~~~g~de~l~ln~~g-~v~E~~~sNl 173 (266)
T PRK09266 138 TFGQLHLRRLAQRAGFDDALFVDPDG-RVSEGATWNL 173 (266)
T ss_pred cHHHHHHHHHHHHcCCCeEEEEcCCC-cEEEcCceEE
Confidence 8777766 99999999988 5778887764
No 27
>cd00449 PLPDE_IV PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV). This D-amino acid superfamily, one of five classes of PLPDE, consists of branched-chain amino acid aminotransferases (BCAT), D-amino acid transferases (DAAT), and 4-amino-4-deoxychorismate lyases (ADCL). BCAT catalyzes the reversible transamination reaction between the L-branched-chain amino and alpha-keto acids. DAAT catalyzes the synthesis of D-glutamic acid and D-alanine, and ADCL converts 4-amino-4-deoxychorismate to p-aminobenzoate and pyruvate. Except for a few enzymes, i. e., Escherichia coli and Salmonella BCATs, which are homohexamers arranged as a double trimer, the class IV PLPDEs are homodimers. Homodimer formation is required for catalytic activity.
Probab=99.94 E-value=5.1e-26 Score=204.60 Aligned_cols=155 Identities=38% Similarity=0.540 Sum_probs=128.5
Q ss_pred CCceeeCCeEEeEEEEEEcCCCeEeeeChhhHHHHHHHhHhhcCCCCC-CHHHHHHHHHHHHHhcCCCCCCCCCceEEEE
Q 024053 103 SGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALANKRWVPPPGKGSLYIR 181 (273)
Q Consensus 103 d~gl~YGdgvFEglrayr~~dG~i~lFrld~Hl~RL~~Sa~~L~ip~p-~~e~l~e~i~elv~~n~~~vP~~~~~~lYIR 181 (273)
|+||+||||||||||++ +| .+|++++|++||.+||+.|+|+.+ +.+++.+.+.++++.++. .+++||
T Consensus 1 drg~~~GdgvFEt~r~~---~g--~~~~l~~Hl~RL~~sa~~l~~~~~~~~~~~~~~i~~~~~~~~~-------~~~~ir 68 (256)
T cd00449 1 DRGLHYGDGVFEGLRAG---KG--RLFRLDEHLDRLNRSAKRLGLPIPYDREELREALKELVAANNG-------ASLYIR 68 (256)
T ss_pred CceeeccceEEEEEEEc---Cc--EEEChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCC-------CCEEEE
Confidence 79999999999999999 99 578899999999999999999955 999999999999998764 578999
Q ss_pred EEEEeeCCCcccCCC--CCeEEEEEEeecCCCccCCCCCeEEEEecCcccc-CCCCcCchhhhccHHHHHHH--------
Q 024053 182 PLLVGSGPILGLAPA--PEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRA-TPGGAGGVKAISNYAPVSEY-------- 250 (273)
Q Consensus 182 p~v~~~~~~lg~~p~--~~~~~~I~~~P~~~y~~~~~~gv~l~v~~~~~R~-~p~g~~~iKt~gNY~~~l~a-------- 250 (273)
++++++.+.+|..+. .++++++++.|.+++.....+|+++.+++ ..|. .+..++++|++ ||+.++++
T Consensus 69 ~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~Kt~-~~~~~~~a~~~a~~~g 146 (256)
T cd00449 69 PLLTRGVGGLGVAPPPSPEPTFVVFASPVGAYAKGGEKGVRLITSP-DRRRAAPGGTGDAKTG-GNLNSVLAKQEAAEAG 146 (256)
T ss_pred EEEEecccccCCCCCCCCCcEEEEEEeeccccccccCCCeEEEEee-eEEeCCCCCCccchhh-CCHHHHHHHHHHHHcC
Confidence 999999877777543 47899999998876511224799999984 4554 44568999999 78888766
Q ss_pred hccEEEEeCCCCEEEecccccC
Q 024053 251 FSLMLFAKKLNDHNTTLPAISL 272 (273)
Q Consensus 251 ~deaL~LD~~g~~~~~~~~~~~ 272 (273)
+||+|++|.+| ..+|++++.+
T Consensus 147 ~de~llld~~g-~v~E~s~sNl 167 (256)
T cd00449 147 ADEALLLDDNG-YVTEGSASNV 167 (256)
T ss_pred CCEEEEECCCC-cEEEcCceEE
Confidence 89999999998 4677777654
No 28
>PRK07546 hypothetical protein; Provisional
Probab=99.68 E-value=7.6e-16 Score=135.73 Aligned_cols=134 Identities=13% Similarity=0.097 Sum_probs=101.0
Q ss_pred CeEEeEEEEEEcCCCeEeeeChhhHHHHHHHhHhhcCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEEEEeeCC
Q 024053 110 QGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGP 189 (273)
Q Consensus 110 dgvFEglrayr~~dG~i~lFrld~Hl~RL~~Sa~~L~ip~p~~e~l~e~i~elv~~n~~~vP~~~~~~lYIRp~v~~~~~ 189 (273)
.++||||+++. +| .++++++|++||.+||+.|++|.+ .+.+.+.+.++++++. +.++||+++++++
T Consensus 4 ~~lfETi~~~~--~G--~~~~l~~Hl~RL~~sa~~l~~~~~-~~~l~~~l~~~~~~~~--------~~~~vrl~~~~~g- 69 (209)
T PRK07546 4 FELIETLRWEP--GA--GFPRLDRHLARLERSARALGFPCD-PAAVRAKLAEAVAGAQ--------GPLRLRLTLARDG- 69 (209)
T ss_pred ccEEEEEEEeC--CC--CcccHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHhhccC--------CCeEEEEEEcCCC-
Confidence 47999999872 57 567889999999999999999975 6788999999987632 4578999987652
Q ss_pred CcccCCCCCeEEEEEEeecCCCccCCCCCeEEEEecCccccCCCCcCchhhhccHHHHHHH--------hccEEEEeCCC
Q 024053 190 ILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVSEY--------FSLMLFAKKLN 261 (273)
Q Consensus 190 ~lg~~p~~~~~~~I~~~P~~~y~~~~~~gv~l~v~~~~~R~~p~g~~~iKt~gNY~~~l~a--------~deaL~LD~~g 261 (273)
.+++.+.|..+... ..++++.+++ ..|..+..+.++|++ ||+.++++ +||+|++|.+|
T Consensus 70 ----------~~~i~~~p~~~~~~--~~~~~l~~~~-~~~~~~~~~~~~Kt~-nr~~~v~a~~~a~~~g~de~l~l~~~G 135 (209)
T PRK07546 70 ----------RLTVETAPLPPLPP--DTVWRVAIAR-TRLDSADPLLRYKTT-RRAAYDAARAELPPAEADEVILLNERG 135 (209)
T ss_pred ----------CEEEEEecCCCCCC--CCcEEEEEcC-cccCCCCcchhcccC-ChHHHHHHHHHHhhCCCCEEEEECCCC
Confidence 35566677643222 2456777773 455544456789998 99998766 89999999999
Q ss_pred CEEEecccccC
Q 024053 262 DHNTTLPAISL 272 (273)
Q Consensus 262 ~~~~~~~~~~~ 272 (273)
+ .+||+.+.+
T Consensus 136 ~-v~E~s~~Ni 145 (209)
T PRK07546 136 E-VCEGTITNV 145 (209)
T ss_pred c-EEEcCceeE
Confidence 5 778877654
No 29
>PF01063 Aminotran_4: Aminotransferase class IV; InterPro: IPR001544 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-IV, currently consists of proteins of about 270 to 415 amino-acid residues that share a few regions of sequence similarity. Surprisingly, the best conserved region does not include the lysine residue to which the pyridoxal-phosphate group is known to be attached, in ilvE, but is located some 40 residues at the C terminus side of the pyridoxal-phosphate-lysine. The D-amino acid transferases (D-AAT), which are among the members of this entry, are required by bacteria to catalyse the synthesis of D-glutamic acid and D-alanine, which are essential constituents of bacterial cell wall and are the building block for other D-amino acids. Despite the difference in the structure of the substrates, D-AATs and L-ATTs have strong similarity [, ]. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1EKV_A 2HGX_A 1EKP_A 1KTA_B 1KT8_B 2A1H_B 2HDK_A 2HGW_B 1EKF_B 2HG8_A ....
Probab=99.51 E-value=1.4e-13 Score=121.59 Aligned_cols=130 Identities=21% Similarity=0.172 Sum_probs=87.7
Q ss_pred eChhhHHHHHHHhHhhcCCCCC-CHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEEEEeeCCCcccCCCCCeEEEEEEee
Q 024053 129 FRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASP 207 (273)
Q Consensus 129 Frld~Hl~RL~~Sa~~L~ip~p-~~e~l~e~i~elv~~n~~~vP~~~~~~lYIRp~v~~~~~~lg~~p~~~~~~~I~~~P 207 (273)
|++++|++||.+||+.+ +..+ +.+++.+.+.++++.+.. .++.|||++++++.+..+..++...........
T Consensus 1 f~l~~Hl~Rl~~S~~~l-~~~~~~~~~l~~~i~~~~~~~~~------~~~~~ir~~v~~g~~~~~~~~~~~~~~~~~~~~ 73 (231)
T PF01063_consen 1 FFLDEHLERLRRSARAL-IGLPFSREELREIIQELLEANPD------QGEGYIRITVTRGGGPLGGSPPENSAPPPFSIA 73 (231)
T ss_dssp ETHHHHHHHHHHHHHHT-TTHSSHHHHHHHHHHHHHHHTTS------SSSEEEEEEEEETSSSSSSSECSEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHH-ccCCcCHHHHHHHHHHHHHHcCC------CCCcEEEEEEEcCCCCcCccCcccccccccccc
Confidence 78999999999999999 6655 899999999999999871 156699999999988777766543332221111
Q ss_pred cCCCccCCCCCeEEEEecCccccCCC-----CcCchhhhccHHHHHH-H--------hccEEEEeCCCCEEEecccccC
Q 024053 208 VGNYFKEGLAPLNLYVEDEFHRATPG-----GAGGVKAISNYAPVSE-Y--------FSLMLFAKKLNDHNTTLPAISL 272 (273)
Q Consensus 208 ~~~y~~~~~~gv~l~v~~~~~R~~p~-----g~~~iKt~gNY~~~l~-a--------~deaL~LD~~g~~~~~~~~~~~ 272 (273)
..... +..........+..+. .++++|++ ||..+++ + +||+|++|.+|+ .+|+.++.+
T Consensus 74 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~Kt~-~~~~~~~~~~~~a~~~g~de~ll~d~~G~-v~E~~~sNi 145 (231)
T PF01063_consen 74 PPRRP-----PPPLVGSVGVRRASPPLPRPNPLPRHKTT-NRLANVLAALRAAREKGADEALLLDEDGN-VTEGSTSNI 145 (231)
T ss_dssp TCHHH-----HEEEEEECSEECETTTSE-TTTSTTS-BS-HHHHHHHHHHHHHHHTTSSEEEEEETTSB-EEEESSSEE
T ss_pred ccccC-----CcceeeeeeEEeccccccccCCCCCeeEC-CcchhhHHHHHHHHhcCcchhheecCCCC-cCCCCCccc
Confidence 11111 1122222122222222 37899999 7776665 3 899999999997 677776653
No 30
>PRK07101 hypothetical protein; Provisional
Probab=99.28 E-value=3.2e-11 Score=104.95 Aligned_cols=123 Identities=15% Similarity=0.076 Sum_probs=82.0
Q ss_pred CeEEeEEEEEEcCCCeEeeeChhhHHHHHHHhHhhcCCCC-C-CHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEEEEee
Q 024053 110 QGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPS-P-SIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGS 187 (273)
Q Consensus 110 dgvFEglrayr~~dG~i~lFrld~Hl~RL~~Sa~~L~ip~-p-~~e~l~e~i~elv~~n~~~vP~~~~~~lYIRp~v~~~ 187 (273)
.++|||||++ +| .++++++|++||.+||+.+++.. | +.+.+.+.+.++. ++..++|+++ +
T Consensus 3 ~~l~ETir~~---~g--~~~~l~~Hl~RL~~Sa~~l~~~~~~~~~~~~~~~~~~~~-----------~~~~r~rl~~--~ 64 (187)
T PRK07101 3 FPLFETIAIE---DG--EIQNLSYHQQRYERTLAEFYGKEAPFDLAEIIQPPTELQ-----------EGLVRCRIDY--N 64 (187)
T ss_pred CcceEEEeee---CC--eeccHHHHHHHHHHHHHHHcccCCcccHHHHhhchhhhc-----------CCCEEEEEEe--c
Confidence 3699999999 99 56889999999999999998866 5 7888887776541 1346777665 3
Q ss_pred CCCcccCCCCCeEEEEEEeecCCCccCCCCCeEEEEecCccccCCCCcCchhhhc-cHHHHHHH----hccEEEEeCCCC
Q 024053 188 GPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAIS-NYAPVSEY----FSLMLFAKKLND 262 (273)
Q Consensus 188 ~~~lg~~p~~~~~~~I~~~P~~~y~~~~~~gv~l~v~~~~~R~~p~g~~~iKt~g-NY~~~l~a----~deaL~LD~~g~ 262 (273)
.+.++ +...|..+ ...+++++..+++ . ...+|+.+ ++...+++ +||+|++| +|
T Consensus 65 ~g~~~----------~~~~~~~~---~~~~~~~~~~~~~-~------~~~~Kt~~r~~~~~~~a~~~g~de~l~~~-~G- 122 (187)
T PRK07101 65 AEIYQ----------VQYFPYQR---RPIRSFQPVYCDD-I------DYSLKYTDRSALNELFAQKGECDEIIIIK-NG- 122 (187)
T ss_pred CCcEE----------EEEEcCCC---CCcCceEEEecCC-c------ccccccCCHHHHHHHHHHhCCCCEEEEEc-CC-
Confidence 32222 22223222 1124677665532 2 23689983 24555554 99999997 44
Q ss_pred EEEecccccC
Q 024053 263 HNTTLPAISL 272 (273)
Q Consensus 263 ~~~~~~~~~~ 272 (273)
..+||+++.+
T Consensus 123 ~v~E~~~sNi 132 (187)
T PRK07101 123 LVTDTSIGNL 132 (187)
T ss_pred EEEEccceEE
Confidence 7888887754
No 31
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.97 E-value=44 Score=27.56 Aligned_cols=47 Identities=15% Similarity=0.281 Sum_probs=39.7
Q ss_pred HHHhHhhcCCCCC-CHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEEEEeeC
Q 024053 138 LQTGAERMCMPSP-SIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSG 188 (273)
Q Consensus 138 L~~Sa~~L~ip~p-~~e~l~e~i~elv~~n~~~vP~~~~~~lYIRp~v~~~~ 188 (273)
|+.++..|++..+ +.|++.+--..|.+.|.. ..|++.||+--|+|..
T Consensus 58 lqEa~qILnV~~~ln~eei~k~yehLFevNdk----skGGSFYLQSKVfRAk 105 (132)
T KOG3442|consen 58 LQEAQQILNVKEPLNREEIEKRYEHLFEVNDK----SKGGSFYLQSKVFRAK 105 (132)
T ss_pred HHHHhhHhCCCCCCCHHHHHHHHHHHHhccCc----ccCcceeehHHHHHHH
Confidence 6789999999988 999999999999999875 2457999998887753
No 32
>COG5475 Uncharacterized small protein [Function unknown]
Probab=29.47 E-value=54 Score=23.30 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=17.8
Q ss_pred CCceEEEEeecc------eEEcCEEeeCC
Q 024053 73 ADYMYTMKCSND------YFEKGRLSRYG 95 (273)
Q Consensus 73 td~m~~~~~~~~------~w~nG~ivp~~ 95 (273)
+|.|+.+.|-+| ++...+++|..
T Consensus 27 s~Gmy~C~Wf~g~g~~~~~F~ed~Lvp~~ 55 (60)
T COG5475 27 SDGMYECRWFDGYGVKREAFHEDELVPGE 55 (60)
T ss_pred cCCeEEEEEecCCCcccccccccceeccc
Confidence 579999999765 57778888754
No 33
>PRK13740 conjugal transfer protein TraY; Provisional
Probab=25.74 E-value=47 Score=24.59 Aligned_cols=10 Identities=20% Similarity=0.169 Sum_probs=7.6
Q ss_pred eeChhhHHHH
Q 024053 128 LFRPDQNAIR 137 (273)
Q Consensus 128 lFrld~Hl~R 137 (273)
.+|+.+|+.|
T Consensus 42 ~lRL~DHL~r 51 (70)
T PRK13740 42 QIRLRDHLKR 51 (70)
T ss_pred HHHHHHHHHh
Confidence 4678888888
No 34
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=23.72 E-value=52 Score=27.05 Aligned_cols=40 Identities=20% Similarity=0.280 Sum_probs=28.8
Q ss_pred HHHhHhhcCCCCC-CHHHHHHHHHHHHHhcCCCCCCCCCceEEEE
Q 024053 138 LQTGAERMCMPSP-SIDQFIDAVKQTALANKRWVPPPGKGSLYIR 181 (273)
Q Consensus 138 L~~Sa~~L~ip~p-~~e~l~e~i~elv~~n~~~vP~~~~~~lYIR 181 (273)
+...+..|+++.. +.|++.+--+.|.+.|.. ..+++.||.
T Consensus 57 l~EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~----~kGGSfYLQ 97 (127)
T PF03656_consen 57 LDEARQILNVKEELSREEIQKRYKHLFKANDP----SKGGSFYLQ 97 (127)
T ss_dssp HHHHHHHHT--G--SHHHHHHHHHHHHHHT-C----CCTS-HHHH
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHhccCC----CcCCCHHHH
Confidence 4678899999885 999999999999999973 245688775
No 35
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=23.39 E-value=95 Score=25.66 Aligned_cols=29 Identities=17% Similarity=0.339 Sum_probs=22.7
Q ss_pred HHHHHhHhhcCCCCC-CHHHHHHHHHHHHH
Q 024053 136 IRLQTGAERMCMPSP-SIDQFIDAVKQTAL 164 (273)
Q Consensus 136 ~RL~~Sa~~L~ip~p-~~e~l~e~i~elv~ 164 (273)
+|+.++..+|+||.- +.+.|..-|.+|-+
T Consensus 94 ~rV~~aL~rLgvPs~~dv~~L~~rId~L~~ 123 (132)
T PF05597_consen 94 ERVARALNRLGVPSRKDVEALSARIDQLTA 123 (132)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 379999999999986 77777776666643
Done!