Query 024053
Match_columns 273
No_of_seqs 281 out of 1717
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 17:22:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024053.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024053hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dth_A Branched-chain amino ac 100.0 2.1E-55 7.2E-60 416.7 19.4 220 53-272 20-250 (372)
2 3uzo_A Branched-chain-amino-ac 100.0 9.3E-54 3.2E-58 403.8 19.5 218 54-272 17-244 (358)
3 3dtg_A Branched-chain amino ac 100.0 1.5E-52 5.3E-57 397.3 20.7 234 37-271 4-249 (372)
4 4dqn_A Putative branched-chain 100.0 5E-52 1.7E-56 390.3 23.0 214 59-272 7-230 (345)
5 2coi_A Branched chain aminotra 100.0 2.2E-51 7.6E-56 391.0 24.0 217 55-272 36-263 (386)
6 2a1h_A Branched chain aminotra 100.0 2.5E-49 8.7E-54 374.3 24.6 216 56-272 17-243 (365)
7 3u0g_A Putative branched-chain 100.0 4E-38 1.4E-42 293.9 17.6 182 82-272 27-222 (328)
8 2eiy_A ILVE, branched-chain am 100.0 3.6E-35 1.2E-39 270.8 18.5 178 85-272 8-199 (308)
9 1iye_A Branched-chain amino ac 100.0 5.8E-35 2E-39 269.3 18.4 178 85-272 9-200 (309)
10 3daa_A D-amino acid aminotrans 100.0 2.5E-33 8.6E-38 255.6 16.4 169 85-272 3-183 (277)
11 3sno_A Hypothetical aminotrans 100.0 2.3E-32 8E-37 253.7 13.4 172 85-272 17-224 (315)
12 3lul_A 4-amino-4-deoxychorisma 100.0 1.2E-31 4.2E-36 243.7 17.8 164 85-272 6-180 (272)
13 1i2k_A 4-amino-4-deoxychorisma 100.0 8.1E-32 2.8E-36 243.8 15.1 167 85-272 2-179 (269)
14 2xpf_A 4-amino-4-deoxychorisma 100.0 2.3E-31 7.9E-36 244.2 16.4 166 85-272 24-200 (292)
15 2zgi_A Putative 4-amino-4-deox 99.9 8.7E-28 3E-32 215.0 9.8 153 85-272 2-165 (246)
16 3csw_A BCAT, putative branched 99.9 5.8E-27 2E-31 214.2 11.7 157 86-272 18-182 (285)
17 3qqm_A MLR3007 protein; struct 99.9 9E-22 3.1E-26 173.7 15.2 137 107-272 13-157 (221)
18 3ceb_A D-aminoacid aminotransf 99.8 2.2E-19 7.6E-24 154.8 9.5 128 107-272 2-139 (194)
No 1
>3dth_A Branched-chain amino acid aminotransferase; open twisted alpha/beta; HET: PLP OBZ; 1.85A {Mycobacterium smegmatis} PDB: 3dtf_A* 3dtg_A* 3jz6_A* 3ht5_A*
Probab=100.00 E-value=2.1e-55 Score=416.73 Aligned_cols=220 Identities=36% Similarity=0.704 Sum_probs=201.7
Q ss_pred CCccccCCCCCCCCCCCcccCCceEEEEeecc-eEEcCEEeeCCCeeeCcCCCceeeCCeEEeEEEEEEcCCCeEeeeCh
Q 024053 53 SDDESADHMDWDNLGFGLTPADYMYTMKCSND-YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRP 131 (273)
Q Consensus 53 ~~~~~~~~~d~~~l~fg~~~td~m~~~~~~~~-~w~nG~ivp~~~~~Is~~d~gl~YGdgvFEglrayr~~dG~i~lFrl 131 (273)
...+....+||++||||++|||||++++|+++ +|.||+++|+++++|++.|+|||||||||||||+|+++||++++|||
T Consensus 20 ~~~~~~~~~~~~~l~fg~~~td~m~~~~~~~~~~W~~g~i~p~~~~~i~~~d~gl~yGdgvFEglkay~~~dG~i~lFrl 99 (372)
T 3dth_A 20 PATDAVRESILANPGFGKYYTDHMVSIDYTVDEGWHNAQVIPYGPIQLDPSAIVLHYGQEIFEGLKAYRWADGSIVSFRP 99 (372)
T ss_dssp CCCHHHHHHHHHSCCSSSCCCSEEEEEEEETTTEEEEEEEEESCCEEECTTCTHHHHCCEEECCEEEEECTTSCEEEESH
T ss_pred CCCchhcccchhccCCCCccCCceEEEEEcCCCeEECCcEeehHhcccCccccHhhcCcEEEEEEEEEECCCCcEeecCH
Confidence 34444456899999999999999999999995 89999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhHhhcCCCCCCHHHHHHHHHHHHHhcCCCCCCC-CCceEEEEEEEEeeCCCcccCCCCCeEEEEEEeecCC
Q 024053 132 DQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPP-GKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGN 210 (273)
Q Consensus 132 d~Hl~RL~~Sa~~L~ip~p~~e~l~e~i~elv~~n~~~vP~~-~~~~lYIRp~v~~~~~~lg~~p~~~~~~~I~~~P~~~ 210 (273)
++|++||++||++|+||.++.++|.++|+++|++|+.|||+. .++++||||+++++++.+|+.|+.+++++|+++|+++
T Consensus 100 ~~H~~RL~~Sa~~L~mp~~~~e~l~~~i~~lv~~n~~~vp~~~~~~~lYiRp~~~~~~~~~G~~p~~~~~~~i~~~p~~~ 179 (372)
T 3dth_A 100 EANAARLQSSARRLAIPELPEEVFIESLRQLIAVDEKWVPPAGGEESLYLRPFVIATEPGLGVRPSNEYRYLLIASPAGA 179 (372)
T ss_dssp HHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHGGGSCCSSSSCEEEEEEEEEECCCCSSCSCCSEEEEEEEEEEESC
T ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhccccCCCCCCCCcEEEEEEEEcCCCcCCcCCCCCeEEEEEEeeCch
Confidence 999999999999999997799999999999999999999997 4579999999999999999998888999999999999
Q ss_pred CccCCCCCeEEEEecCccccCCCCcCchhhhccHHHHHHH--------hccEEEEeCC-CCEEEecccccC
Q 024053 211 YFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVSEY--------FSLMLFAKKL-NDHNTTLPAISL 272 (273)
Q Consensus 211 y~~~~~~gv~l~v~~~~~R~~p~g~~~iKt~gNY~~~l~a--------~deaL~LD~~-g~~~~~~~~~~~ 272 (273)
|++.+.+|+++.++++++|++|++++++|+++||++++++ |||+||||.. ....+|++++.+
T Consensus 180 y~~~g~~~v~l~v~~~~~R~~p~g~~~~K~~gNY~~~~la~~eA~~~G~de~l~ld~~~~g~v~E~~~sNi 250 (372)
T 3dth_A 180 YFKGGIKPVSVWLSHEYVRASPGGTGAAKFGGNYAASLLAQAQAAEMGCDQVVWLDAIERRYVEEMGGMNL 250 (372)
T ss_dssp SSSCSSSCEEEEECSSCCSCCTTSSTTSCCHHHHHTTHHHHHHHHHTTCSEEEEECTTTSCBEEEETTEEE
T ss_pred hhccCCccEEEEEccceeccCCCcccchhhHhhhHHHHHHHHHHHHcCCCEEEEEcCCCCCEEEEcCceeE
Confidence 9987778999999977999999999999998899999877 9999999983 235688887654
No 2
>3uzo_A Branched-chain-amino-acid aminotransferase; BCAT, amino-acid biosynthesis, branched-CH acid biosynthesis, pyridoxal phosphate, L-GLUT; HET: PLP GLU; 2.00A {Deinococcus radiodurans} PDB: 3uzb_A* 3uyy_A*
Probab=100.00 E-value=9.3e-54 Score=403.83 Aligned_cols=218 Identities=39% Similarity=0.707 Sum_probs=196.9
Q ss_pred CccccCCCCCCCCCCCcccCCceEEEEeecceEEcCEEeeCCCeeeCcCCCceeeCCeEEeEEEEEEcCCCeEeeeChhh
Q 024053 54 DDESADHMDWDNLGFGLTPADYMYTMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQ 133 (273)
Q Consensus 54 ~~~~~~~~d~~~l~fg~~~td~m~~~~~~~~~w~nG~ivp~~~~~Is~~d~gl~YGdgvFEglrayr~~dG~i~lFrld~ 133 (273)
..++.+++||++|+||++|||||++++|++|.|.||+++|++++.|++.|+|||||||||||||+|+++||++++|||++
T Consensus 17 ~~~~~~~~~~~~l~fg~~~td~m~~~~~~~~~w~ng~i~p~~~~~i~~~d~gl~yGdgvFE~ir~y~~~dG~i~lfrl~~ 96 (358)
T 3uzo_A 17 QAKKLADIDWSTLGFSYIRTDLRYLAHWKDGEWDAGTLTEDNQIHLAEGSTALHYGQQCFEGLKAYRCADGSINLFRPDQ 96 (358)
T ss_dssp -------CCGGGCCSCCCCCSCEEEEEEETTEECCCEEESCCEEEEETTCHHHHSCCEEECCEEEEECTTSCEEECCHHH
T ss_pred ccccccCCCcccCCCCCcccCeeEEEEEeCCcEECCEEeEcccceeChHHcceecCcEEEEEEEEEECCCCcEeecCHHH
Confidence 44566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHhhcCCCCCCHHHHHHHHHHHHHhcCCCCCCCCC-ceEEEEEEEEeeCCCcccCCCCCeEEEEEEeecCCCc
Q 024053 134 NAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGK-GSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYF 212 (273)
Q Consensus 134 Hl~RL~~Sa~~L~ip~p~~e~l~e~i~elv~~n~~~vP~~~~-~~lYIRp~v~~~~~~lg~~p~~~~~~~I~~~P~~~y~ 212 (273)
|++||++||++|+||.++.++|.++|++++++|+.|||+.+. +++||||+++++++.+|+.|+.++.++|++.|+++|+
T Consensus 97 Hl~RL~~Sa~~L~ip~~~~e~l~~~i~~lv~~n~~~vp~~~~~~~~yiR~~v~~~~~~~G~~p~~~~~~~i~~~P~~~~~ 176 (358)
T 3uzo_A 97 NAARMRMSCRRLLMPELSDEQFIDACLQVVRANEHFLPPYGTGGSLYLRPFVIGVGDNIGVRTAPEFIFSVFCVPVGPYF 176 (358)
T ss_dssp HHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHTGGGSCCTTSCCEEEEEEEEEEESSCCSSSCCSEEEEEEEEEEECCSS
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCcCCCCCCCceEEEEEEEEecCCccccCCCCCeEEEEEEecChhhh
Confidence 999999999999999669999999999999999999998644 6899999999999999999877899999999999999
Q ss_pred cCCCCCeEEEEecCccccCCCCcCchhhhccHHHHHHH--------hccEEEEeCCC-CEEEecccccC
Q 024053 213 KEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVSEY--------FSLMLFAKKLN-DHNTTLPAISL 272 (273)
Q Consensus 213 ~~~~~gv~l~v~~~~~R~~p~g~~~iKt~gNY~~~l~a--------~deaL~LD~~g-~~~~~~~~~~~ 272 (273)
+.+.+|+++.+++ ++|+.|++++++|+++||++++++ |||+||||.++ ...+|++++.+
T Consensus 177 ~~g~~~v~l~~~~-~~R~~p~~~~~~K~~~NYl~~vla~~eA~~~G~~e~l~ld~~~~g~V~E~~~sNi 244 (358)
T 3uzo_A 177 KGGLTPTNFITSD-YDRAAPHGTGAAKVGGNYAASLLPGYEAKKRDFADVIYLDPATHTTIEEAGAANF 244 (358)
T ss_dssp CSSSCCEEEECCS-CCSSCTTSSTTSCBHHHHHHHHHHHHHHHHTTCSEECCBCTTTSCBBCBCSSSEE
T ss_pred hcCCccEEEEEEe-eeccCCCccccccchhhhHHHHHHHHHHHHcCCCEEEEEeCCCCCeEEEcCCeeE
Confidence 8777899999994 899999999999986799999887 99999999973 46788887754
No 3
>3dtg_A Branched-chain amino acid aminotransferase; open twisted alpha/beta; HET: PLP; 1.90A {Mycobacterium smegmatis} PDB: 3dtf_A* 3jz6_A* 3ht5_A*
Probab=100.00 E-value=1.5e-52 Score=397.26 Aligned_cols=234 Identities=34% Similarity=0.670 Sum_probs=203.9
Q ss_pred hhhhhccccccCCCCCCCc-cccCCCCCCCCCCCcccCCceEEEEeecc-eEEcCEEeeCCCeeeCcCCCceeeCCeEEe
Q 024053 37 SQAAASLQQDCEPSAYSDD-ESADHMDWDNLGFGLTPADYMYTMKCSND-YFEKGRLSRYGKIELSPSSGVLNYGQGLFE 114 (273)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~l~fg~~~td~m~~~~~~~~-~w~nG~ivp~~~~~Is~~d~gl~YGdgvFE 114 (273)
.+.++++.+...++....+ +..+.+ ++|||||++|||||++++|+.+ +|.||+|+|+++++|||.|++|||||||||
T Consensus 4 ~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~fg~~~tdhm~~~~~~~~~gW~ng~ivp~~~~~i~p~~~~lhYG~gvFE 82 (372)
T 3dtg_A 4 HHNSGPLEFTVSANTNPATDAVRESI-LANPGFGKYYTDHMVSIDYTVDEGWHNAQVIPYGPIQLDPSAIVLHYGQEIFE 82 (372)
T ss_dssp ------CCCEECCCSSCCCHHHHHHH-HHSCCSSSCCCSEEEEEEEETTTEEEEEEEEESCCEEECTTCTHHHHCCEEEC
T ss_pred ccCCcceEEEEeCCCCCCCcchhhhH-hhccCCCCCccceeEEEEECCCCcEeCCEEEEchhceeCcchhhhhccceeee
Confidence 3444555666655443322 233333 6899999999999999999854 899999999999999999999999999999
Q ss_pred EEEEEEcCCCeEeeeChhhHHHHHHHhHhhcCCCCCCHHHHHHHHHHHHHhcCCCCCCCCC-ceEEEEEEEEeeCCCccc
Q 024053 115 GMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGK-GSLYIRPLLVGSGPILGL 193 (273)
Q Consensus 115 glrayr~~dG~i~lFrld~Hl~RL~~Sa~~L~ip~p~~e~l~e~i~elv~~n~~~vP~~~~-~~lYIRp~v~~~~~~lg~ 193 (273)
|||+|+++||++.+||+++|++||++||++|+||.++.|++.++++++++.+..|||...+ .++||||+++++++.+|+
T Consensus 83 giraY~~~dG~i~~Fr~~~h~~Rl~~Sa~~l~iP~~~~e~~~~~~~~l~~~~~~~v~~~~~~~~~YiRp~~~~~~~~lgv 162 (372)
T 3dtg_A 83 GLKAYRWADGSIVSFRPEANAARLQSSARRLAIPELPEEVFIESLRQLIAVDEKWVPPAGGEESLYLRPFVIATEPGLGV 162 (372)
T ss_dssp CEEEEECTTSCEEEESHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHGGGSCCSSSSCEEEEEEEEEECCCCCSC
T ss_pred eEEEEECCCCeEEeeCchHHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhhhccccCCCCceEEEEEEEeecCccCc
Confidence 9999999999999999999999999999999999999999999999999999999998766 689999999999999999
Q ss_pred CCCCCeEEEEEEeecCCCccCCCCCeEEEEecCccccCCCCcCchhhhccHHHHHHH--------hccEEEEeCCCC-EE
Q 024053 194 APAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVSEY--------FSLMLFAKKLND-HN 264 (273)
Q Consensus 194 ~p~~~~~~~I~~~P~~~y~~~~~~gv~l~v~~~~~R~~p~g~~~iKt~gNY~~~l~a--------~deaL~LD~~g~-~~ 264 (273)
.|+.++.++++++|+++|+..+.+++.+.++.+++|++|++++.+|++|||++++++ |||+||||..++ ..
T Consensus 163 ~p~~~~~~~ii~~p~~~~~~~~~~~~~~~~~~~~~R~~p~~~~~~K~~gNY~~~~la~~eA~~~G~deal~Ld~~~~g~V 242 (372)
T 3dtg_A 163 RPSNEYRYLLIASPAGAYFKGGIKPVSVWLSHEYVRASPGGTGAAKFGGNYAASLLAQAQAAEMGCDQVVWLDAIERRYV 242 (372)
T ss_dssp SCCSEEEEEEEEEEESCSSTTSSSCEEEEECSSCCSCCTTSSTTSCCHHHHHHHHHHHHHHHHTTCSEEEEECTTTSCBE
T ss_pred CCCCCceeeeEecccccccccCcccceeecccceeecCcCCcchHHhcCCcchhhhHHHHHHhcCcchhhhhccccccce
Confidence 998899999999999999988778888888878999999999999999999999887 999999998665 57
Q ss_pred Eeccccc
Q 024053 265 TTLPAIS 271 (273)
Q Consensus 265 ~~~~~~~ 271 (273)
+|++++-
T Consensus 243 ~E~~~sN 249 (372)
T 3dtg_A 243 EEMGGMN 249 (372)
T ss_dssp EEETTEE
T ss_pred eecCceE
Confidence 8887764
No 4
>4dqn_A Putative branched-chain amino acid aminotransfera; aminotransferase, transferase; 1.97A {Streptococcus mutans}
Probab=100.00 E-value=5e-52 Score=390.27 Aligned_cols=214 Identities=43% Similarity=0.774 Sum_probs=196.9
Q ss_pred CCCCCCCCCCCcccCCceEEEEeecceEEcCEEeeCCCeeeCcCCCceeeCCeEEeEEEEEEcCCCeEeeeChhhHHHHH
Q 024053 59 DHMDWDNLGFGLTPADYMYTMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRL 138 (273)
Q Consensus 59 ~~~d~~~l~fg~~~td~m~~~~~~~~~w~nG~ivp~~~~~Is~~d~gl~YGdgvFEglrayr~~dG~i~lFrld~Hl~RL 138 (273)
+++||++|+||++|||||++++|++|.|+||+++|.++++|++.|+|||||||||||||+|++.||++++|+|++|++||
T Consensus 7 ~~~~~~~l~fg~~~td~m~~~~~~~~~w~nG~~vp~~~~~i~~~d~gl~yGdgvFE~ir~~~g~dg~~~~f~l~~Hl~RL 86 (345)
T 4dqn_A 7 VDLDWKNLGFEYHKLPFRYISYYKDGKWDDGKLTEDATLHISESSPALHYGQEAFEGLKAYRTKDGSVQLFRPNMNAERL 86 (345)
T ss_dssp CCCCGGGCCSCCCCCSCEEEEEEETTEECCCEEESCCSCCCCTTCHHHHSCCEEECCEEEEECTTSCEEEESHHHHHHHH
T ss_pred CCCCchhcCCCCcccCceEEEEecCCcEECCEEeEhhhcccCccccccccccEEEEEEEEEeCCCCcccccCHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999888988899999999999
Q ss_pred HHhHhhcCCCCCCHHHHHHHHHHHHHhcCCCCCCCC-CceEEEEEEEEeeCCCcccCCCCCeEEEEEEeecCCCccCCCC
Q 024053 139 QTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPG-KGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLA 217 (273)
Q Consensus 139 ~~Sa~~L~ip~p~~e~l~e~i~elv~~n~~~vP~~~-~~~lYIRp~v~~~~~~lg~~p~~~~~~~I~~~P~~~y~~~~~~ 217 (273)
++||++|+||.++.++|.++|++++++|+.|||+.+ +.++||||+++++++.+|+.|+.+++++|++.|+++|+..+.+
T Consensus 87 ~~Sa~~L~i~~~~~~~l~~~i~~lv~~n~~~vp~~~~~~~~yiR~~v~~~~~~~g~~p~~~~~~~i~~~p~~~~~~~~~~ 166 (345)
T 4dqn_A 87 QRTADRLLMPQVPTDKFIDAAKQVVRANEEYVPPYGTGATLYLRPLLIGVGDVIGVHPADEYIFTIFAMPVGNYFKGGLA 166 (345)
T ss_dssp HHHHHHTTCCCCCHHHHHHHHHHHHHHTGGGSCCTTSSCEEEEEEEEEEESCCCSSCCCSEEEEEEEEEEECCSCTTSCC
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHhccccCCCCCCCCcEEEEEEEEeCCCccCCCCCCCeEEEEEEEECccccccCCC
Confidence 999999999966999999999999999999999864 4689999999999998999887789999999999999876678
Q ss_pred CeEEEEecCccccCCCCcCchhhhccHHHHHHH--------hccEEEEeCC-CCEEEecccccC
Q 024053 218 PLNLYVEDEFHRATPGGAGGVKAISNYAPVSEY--------FSLMLFAKKL-NDHNTTLPAISL 272 (273)
Q Consensus 218 gv~l~v~~~~~R~~p~g~~~iKt~gNY~~~l~a--------~deaL~LD~~-g~~~~~~~~~~~ 272 (273)
|+++.++++++|++|++++++|+++||++++++ |||+||||.+ ....+|++++.+
T Consensus 167 gv~l~~~~~~~R~~~~~~~~~Kt~~nyl~~vla~~eA~~~G~de~l~ld~~~~g~v~E~~~sNi 230 (345)
T 4dqn_A 167 PTNFLIQDDYDRAAPHGTGAAKVGGNYAASLLPGKVAHERQFSDVIYLDPATHTKIEEVGSANF 230 (345)
T ss_dssp CEEEEECTTCCSSCTTSSTTSCCHHHHHHHHHHHHHHHHTTCSCEEEECTTTSCBEEEETTEEE
T ss_pred CEEEEEccceEecCCCccccccccccCHHHHHHHHHHHHCCCCEEEEEcCCCCCeEEEcCCceE
Confidence 999999965899999999999996699999887 9999999995 246688887654
No 5
>2coi_A Branched chain aminotransferase 1, cytosolic; PLP-dependent enzyme; HET: PLP GBN; 1.90A {Homo sapiens} PDB: 2cog_A* 2coj_A* 2abj_A*
Probab=100.00 E-value=2.2e-51 Score=391.03 Aligned_cols=217 Identities=31% Similarity=0.538 Sum_probs=195.3
Q ss_pred ccccCCCCCCCCCCCcccCCceEEEEeecc-eEEcCEEeeCCCeeeCcCCCceeeCCeEEeEEEEEEcCCCeEeeeChhh
Q 024053 55 DESADHMDWDNLGFGLTPADYMYTMKCSND-YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQ 133 (273)
Q Consensus 55 ~~~~~~~d~~~l~fg~~~td~m~~~~~~~~-~w~nG~ivp~~~~~Is~~d~gl~YGdgvFEglrayr~~dG~i~lFrld~ 133 (273)
+.++.++||++|+||++|||||+.++|+++ +|.||+++|++++.|++.|++||||||||||||+|+++||++++|||++
T Consensus 36 ~~~~~~~~~~~~~fg~~~td~m~~~~~~~~~~w~ng~~~p~~~~~i~~~d~~l~yG~gvFEg~k~y~g~dg~i~~frld~ 115 (386)
T 2coi_A 36 TILKEKPDPNNLVFGTVFTDHMLTVEWSSEFGWEKPHIKPLQNLSLHPGSSALHYAVELFEGLKAFRGVDNKIRLFQPNL 115 (386)
T ss_dssp SSCCCCCCCC-CCTTCCCCSEEEEEEEETTTEECCCEEEECCCEEECTTCHHHHSCCEEECCEEEEECTTSCEEEESHHH
T ss_pred CCcccCCCccccCCccccccceEEEEeCCCcEEECCEEeecccCccCcccchhhcCceeEEEEEEEeCCCCceeecCHHH
Confidence 344667899999999999999999999987 7999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHhhcCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEEEEeeCCCcccCCCCCeEEEEEEeecCCCcc
Q 024053 134 NAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFK 213 (273)
Q Consensus 134 Hl~RL~~Sa~~L~ip~p~~e~l~e~i~elv~~n~~~vP~~~~~~lYIRp~v~~~~~~lg~~p~~~~~~~I~~~P~~~y~~ 213 (273)
|++||++||++|+||.++.++|.++++++++.|+.|+|+..+.++||||+++++++.+|+.|+.+++++|++.|+++|+.
T Consensus 116 H~~RL~~Sa~~l~~p~~~~e~~~~~i~~lv~~~~~~vp~~~g~~~yiR~~~~~~~~~~g~~p~~~~~~~i~~~p~~~y~~ 195 (386)
T 2coi_A 116 NMDRMYRSAVRATLPVFDKEELLECIQQLVKLDQEWVPYSTSASLYIRPTFIGTEPSLGVKKPTKALLFVLLSPVGPYFS 195 (386)
T ss_dssp HHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHTGGGSCSSSSCEEEEEEEEEECCCSCSCSCCSEEEEEEEEEEECCCC-
T ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccccCCCCCCccEEEEEEEEecCCccccCCCCCcEEEEEEEECccccc
Confidence 99999999999999966999999999999999999999766679999999999888899998889999999999999987
Q ss_pred CC-CCCeEEEEecCccccCCCCcCchhhhccHHHHHHH--------hccEEEEe-CCCCEEEecccccC
Q 024053 214 EG-LAPLNLYVEDEFHRATPGGAGGVKAISNYAPVSEY--------FSLMLFAK-KLNDHNTTLPAISL 272 (273)
Q Consensus 214 ~~-~~gv~l~v~~~~~R~~p~g~~~iKt~gNY~~~l~a--------~deaL~LD-~~g~~~~~~~~~~~ 272 (273)
.+ .+|+++.+++.+.|++|++++++|+++||++++++ |||+|||| .+| ..+|++++.+
T Consensus 196 ~~~~~~v~l~~~~~~~r~~p~~~g~~K~~~Ny~~~~la~~eA~~~G~de~L~ld~~~g-~V~E~~~sNi 263 (386)
T 2coi_A 196 SGTFNPVSLWANPKYVRAWKGGTGDCKMGGNYGSSLFAQCEAVDNGCQQVLWLYGEDH-QITEVGTMNL 263 (386)
T ss_dssp ----CCEEEEECTTCCSCCTTSSTTSCCTHHHHTTHHHHHHHHTTTCSEEEEEETTTT-EEEEETTEEE
T ss_pred ccccccEEEEEcccccccCCCcccccccccChHHHHHHHHHHHHcCCCEEEEEECCCC-EEEEeCCceE
Confidence 76 68999999976789999999999997799998876 99999999 555 6889987654
No 6
>2a1h_A Branched chain aminotransferase; fold type IV; HET: PLP GBN; 1.80A {Homo sapiens} SCOP: e.17.1.1 PDB: 1ekp_A* 1ekv_A* 1ekf_A* 1kta_A* 1kt8_A* 2hhf_B* 2hhf_A* 2hgw_A* 2hg8_A* 2hgx_A* 2hdk_A*
Probab=100.00 E-value=2.5e-49 Score=374.26 Aligned_cols=216 Identities=31% Similarity=0.554 Sum_probs=196.3
Q ss_pred cccCCCCC-CCCCCCcccCCceEEEEeecceEEcCEEeeCCCeeeCcCCCceeeCCeEEeEEEEEEcCCCeEeeeChhhH
Q 024053 56 ESADHMDW-DNLGFGLTPADYMYTMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQN 134 (273)
Q Consensus 56 ~~~~~~d~-~~l~fg~~~td~m~~~~~~~~~w~nG~ivp~~~~~Is~~d~gl~YGdgvFEglrayr~~dG~i~lFrld~H 134 (273)
.++.++|| ++|+||++|||||+.++|++.+|+||+++|++++.|++.|++||||||||||||+|+++||++++|||++|
T Consensus 17 ~~~~~~~~~~~l~fg~~~~d~m~~~~~~~~~w~ng~~~p~~~~~i~~~d~~l~yG~gvFEt~r~y~g~dG~i~~f~l~~H 96 (365)
T 2a1h_A 17 KPHKKPGPGEPLVFGKTFTDHMLMVEWNDKGWGQPRIQPFQNLTLHPASSSLHYSLQLFEGMKAFKGKDQQVRLFRPWLN 96 (365)
T ss_dssp SCCCCCCTTSCCCTTCSCCSEEEEEEEETTEECCCEEEESCCEEECTTBHHHHSCCEEECCEEEEECTTSCEEEESHHHH
T ss_pred CccCCCccccccCcCCccccceeeeecccCeEECCEEeEcccceeCccchhhhcCceeEeEEEEEecCCCceeecCHHHH
Confidence 33446778 99999999999999999988789999999999999999999999999999999999988999889999999
Q ss_pred HHHHHHhHhhcCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEEEEeeCCCcccCCCCCeEEEEEEeecCCCccC
Q 024053 135 AIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKE 214 (273)
Q Consensus 135 l~RL~~Sa~~L~ip~p~~e~l~e~i~elv~~n~~~vP~~~~~~lYIRp~v~~~~~~lg~~p~~~~~~~I~~~P~~~y~~~ 214 (273)
++||++||++|+||.++.++|.++|.++++.|+.|+|...+.++||||+++++++.+|+.|+.+++++|++.|+++|+..
T Consensus 97 l~RL~~Sa~~l~~~~~~~~~l~~~i~~lv~~~~~~~p~~~g~~~yiR~~~~~~~~~~g~~p~~~~~~~i~~~p~~~~~~~ 176 (365)
T 2a1h_A 97 MDRMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPVLIGNEPSLGVSQPRRALLFVILCPVGAYFPG 176 (365)
T ss_dssp HHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHTGGGSCCSTTCEEEEEEEEEECCBCCSCSCCSEEEEEEEEEEECCSSSS
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhccccCCCCCCceEEEEEEEEecCCccCCCCCCCcEEEEEEEECcccccc
Confidence 99999999999999669999999999999999999997655689999999999888999887789999999999999877
Q ss_pred C-CCCeEEEEecCccccCCCCcCchhhhccHHHHHHH--------hccEEEE-eCCCCEEEecccccC
Q 024053 215 G-LAPLNLYVEDEFHRATPGGAGGVKAISNYAPVSEY--------FSLMLFA-KKLNDHNTTLPAISL 272 (273)
Q Consensus 215 ~-~~gv~l~v~~~~~R~~p~g~~~iKt~gNY~~~l~a--------~deaL~L-D~~g~~~~~~~~~~~ 272 (273)
+ .+|+++.+++.++|++|++++++|+++||++++++ |||+||| |.+| ..+|++++.+
T Consensus 177 g~~~~v~l~~~~~~~R~~~~~~~~~Kt~~ny~~~~la~~eA~~~G~de~L~l~d~~G-~V~E~~~sNi 243 (365)
T 2a1h_A 177 GSVTPVSLLADPAFIRAWVGGVGNYKLGGNYGPTVLVQQEALKRGCEQVLWLYGPDH-QLTEVGTMNI 243 (365)
T ss_dssp SSCCCEEEEECTTCCSCCTTSSTTSCBGGGTTTHHHHHHHHHHTTCSEEEEEETTTT-EEEEETTEEE
T ss_pred ccccceEEEEccccccCCCCccchhchhhccHHHHHHHHHHHHcCCCeEEEEECCCC-eEEEcCceEE
Confidence 6 68999999966789999999999997799999877 9999999 6655 6788887754
No 7
>3u0g_A Putative branched-chain amino acid aminotransfera; structural genomics, seattle structural genomics center for infectious disease; 1.90A {Burkholderia pseudomallei}
Probab=100.00 E-value=4e-38 Score=293.94 Aligned_cols=182 Identities=22% Similarity=0.325 Sum_probs=158.8
Q ss_pred ecc-eEEcCEEeeCCCeeeCcCCCceeeCCeEEeEEEEEEcCCCeEeeeChhhHHHHHHHhHhhcCCCCC-CHHHHHHHH
Q 024053 82 SND-YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAV 159 (273)
Q Consensus 82 ~~~-~w~nG~ivp~~~~~Is~~d~gl~YGdgvFEglrayr~~dG~i~lFrld~Hl~RL~~Sa~~L~ip~p-~~e~l~e~i 159 (273)
+++ +|.||+++|.++++|++.|+|||||||||||||+|+++||++++|++++|++||++||++|+||.| +.++|.+++
T Consensus 27 ~~~~~w~nG~~vp~~~~~i~~~drg~~yGdgvFEtir~~~~~dG~~~~f~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i 106 (328)
T 3u0g_A 27 RDGKIWMDGKLIEWRDAKIHVLTHTLHYGMGVFEGVRAYKTADGGTAIFRLKEHTKRLLNSAKIFQMDVPFDQETLEAAQ 106 (328)
T ss_dssp CCSEEEETTEEEEGGGCEEESSCHHHHHCCEEECCEEEEECTTSCEEEESHHHHHHHHHHHHHHTTCCCSSCHHHHHHHH
T ss_pred CCCEEEECCEEeehHhCccCccchHHhcCceEEEEEEEEECCCCCeeeCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Confidence 444 799999999999999999999999999999999998777988899999999999999999999987 999999999
Q ss_pred HHHHHhcCCCCCCCCCceEEEEEEEEeeCCCcccCCCC-CeEEEEEEeecCCCccCC--CCCeEEEEecCccccCCCC-c
Q 024053 160 KQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAP-EYTFLVFASPVGNYFKEG--LAPLNLYVEDEFHRATPGG-A 235 (273)
Q Consensus 160 ~elv~~n~~~vP~~~~~~lYIRp~v~~~~~~lg~~p~~-~~~~~I~~~P~~~y~~~~--~~gv~l~v~~~~~R~~p~g-~ 235 (273)
++++++|+. .++||||+++++.+.+|+.|+. .++++|++.|+++|+... .+|+++.++ ++.|..+++ +
T Consensus 107 ~~lv~~n~~-------~~~~iR~~vtrg~~~~g~~p~~~~~~~~i~~~p~~~~~~~~~~~~gv~l~~~-~~~R~~~~~~~ 178 (328)
T 3u0g_A 107 RDVVRENKL-------ESCYLRPIIWIGSEKLGVSAKGNTIHVAIAAWPWGAYLGEEGLAKGIRVKTS-SFTRHHVNVSM 178 (328)
T ss_dssp HHHHHHTTC-------SSEEEEEEEEECSSCCSTTCCCCCEEEEEEEEECC----HHHHHHCEEEEEC-SSCCCCTTTSC
T ss_pred HHHHHhcCC-------CCeEEEEEEEecCCCCCcCCCCCCcEEEEEEEEcCCCCChhhhcCCEEEEEe-eeeecCCCCcc
Confidence 999999976 6899999999999888887654 689999999999886532 379999998 588999887 8
Q ss_pred CchhhhccHHHHHHH--------hccEEEEeCCCCEEEecccccC
Q 024053 236 GGVKAISNYAPVSEY--------FSLMLFAKKLNDHNTTLPAISL 272 (273)
Q Consensus 236 ~~iKt~gNY~~~l~a--------~deaL~LD~~g~~~~~~~~~~~ 272 (273)
+++|+++||++++++ |||+||||.+|+ .+|++++.+
T Consensus 179 ~~~K~t~nyl~~vla~~eA~~~G~~e~l~ld~~g~-v~E~~~sNi 222 (328)
T 3u0g_A 179 VRAKASGWYVNSILANQEATADGYDEALLLDVDGY-VSEGSGENF 222 (328)
T ss_dssp TTSCBGGGHHHHHHHHHHHHHTTCSEEEEECTTSC-EEEESSSEE
T ss_pred cchhhhhhhHHHHHHHHHHHHCCCCEEEEECCCCc-EEEcCceeE
Confidence 999966699999887 999999999874 567776654
No 8
>2eiy_A ILVE, branched-chain amino acid aminotransferase; PLP-dependent enzyme; HET: PLP; 1.35A {Thermus thermophilus} PDB: 1wrv_A* 2ej0_A* 2ej2_A* 2ej3_A*
Probab=100.00 E-value=3.6e-35 Score=270.77 Aligned_cols=178 Identities=24% Similarity=0.319 Sum_probs=151.9
Q ss_pred eEEcCEEeeCCCeeeCcCCCceeeCCeEEeEEEEEEcCCCeEeeeChhhHHHHHHHhHhhcCCCCC-CHHHHHHHHHHHH
Q 024053 85 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTA 163 (273)
Q Consensus 85 ~w~nG~ivp~~~~~Is~~d~gl~YGdgvFEglrayr~~dG~i~lFrld~Hl~RL~~Sa~~L~ip~p-~~e~l~e~i~elv 163 (273)
+|.||+++|.+++.|++.|+|||||||||||||+|++++|. .+|++++|++||++||++|+||.| +.++|.+++.+++
T Consensus 8 ~~~nG~~~~~~~~~i~~~d~g~~yG~gvFEtir~~~g~~g~-~~~~l~~Hl~RL~~Sa~~l~~~~~~~~~~l~~~i~~~~ 86 (308)
T 2eiy_A 8 IWMNGAFVPQEEAKTSVLSHALHYGTSVFEGIRAYETAKGP-AIFRLKEHVKRFYNSAKVLRMEIPFAPEELEEAIKEVV 86 (308)
T ss_dssp EEETTEEECGGGCCCCTTCHHHHHCCEEECCEEEECCTTSC-EEETHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHH
T ss_pred EEECCEEeEhHHCccCccchHhhhcceEEEEEEEECCCCcc-cccCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999665555 679999999999999999999977 9999999999999
Q ss_pred HhcCCCCCCCCCceEEEEEEEEeeCCCcccCCC--CCeEEEEEEeecCCCccCC--CCCeEEEEecCccccCCCC-cCch
Q 024053 164 LANKRWVPPPGKGSLYIRPLLVGSGPILGLAPA--PEYTFLVFASPVGNYFKEG--LAPLNLYVEDEFHRATPGG-AGGV 238 (273)
Q Consensus 164 ~~n~~~vP~~~~~~lYIRp~v~~~~~~lg~~p~--~~~~~~I~~~P~~~y~~~~--~~gv~l~v~~~~~R~~p~g-~~~i 238 (273)
++|+. .++|||++++++.+.+|+.|. .+++++|++.|+++|+... .+|+++.++ ++.|..+++ ++++
T Consensus 87 ~~~~~-------~~~~iR~~v~~g~~~~~~~p~~~~~~~~~i~~~p~~~~~~~~~~~~gv~l~~~-~~~r~~~~~~~~~~ 158 (308)
T 2eiy_A 87 RRNGY-------RSCYIRPLAWMGAKALGVNPLPNNPAEVMVAAWEWGAYLGEEAVRKGARLITS-SWARFPANVMPGKA 158 (308)
T ss_dssp HHTTC-------SSEEEEEEEECCSSCCSSCCGGGCSCEEEEEEEEC--------CCSCEEEEEC-SSCBCCTTTSCTTS
T ss_pred HhCCC-------CcEEEEEEEEecCCccCcCCCCCCCeEEEEEEEEcCccCCcccccCCeEEEEe-cceecCCCCcCcce
Confidence 99874 579999999999888888765 4789999999999876543 479999999 478988876 6999
Q ss_pred hhhccHHHHHHH--------hccEEEEeCCCCEEEecccccC
Q 024053 239 KAISNYAPVSEY--------FSLMLFAKKLNDHNTTLPAISL 272 (273)
Q Consensus 239 Kt~gNY~~~l~a--------~deaL~LD~~g~~~~~~~~~~~ 272 (273)
|+++||++++++ |||+||||.+|+ .+|++++.+
T Consensus 159 Kt~~ny~~~~la~~~A~~~G~de~l~ld~~G~-V~Egs~sNi 199 (308)
T 2eiy_A 159 KVGGNYVNSALAKMEAVAAGADEALLLDEEGY-VAEGSGENL 199 (308)
T ss_dssp CBGGGHHHHHHHHHHHHHTTCSEEEEEBTTSS-EEEESSCEE
T ss_pred ehhhhHHHHHHHHHHHHHcCCCEEEEECCCCe-EEEcCceEE
Confidence 999779998876 999999999886 567877654
No 9
>1iye_A Branched-chain amino acid aminotransferase; hexamer, PLP; HET: PGU; 1.82A {Escherichia coli} SCOP: e.17.1.1 PDB: 1i1l_A* 1i1m_A* 1iyd_A* 1i1k_A* 1a3g_A*
Probab=100.00 E-value=5.8e-35 Score=269.32 Aligned_cols=178 Identities=25% Similarity=0.393 Sum_probs=157.4
Q ss_pred eEEcCEEeeCCCeeeCcCCCceeeCCeEEeEEEEEEcCCCeEeeeChhhHHHHHHHhHhhcCCCCC-CHHHHHHHHHHHH
Q 024053 85 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTA 163 (273)
Q Consensus 85 ~w~nG~ivp~~~~~Is~~d~gl~YGdgvFEglrayr~~dG~i~lFrld~Hl~RL~~Sa~~L~ip~p-~~e~l~e~i~elv 163 (273)
+|.||+++|.+++.|++.|+|||||||||||||+|+++||+ .+|++++|++||++||++|+||.| +.++|.+++.+++
T Consensus 9 ~~~ng~~~~~~~~~i~~~d~g~~yG~gvFEtir~~~~~~G~-~~~~l~~Hl~RL~~Sa~~l~~~~~~~~~~l~~~i~~~~ 87 (309)
T 1iye_A 9 IWFNGEMVRWEDAKVHVMSHALHYGTSVFEGIRCYDSHKGP-VVFRHREHMQRLHDSAKIYRFPVSQSIDELMEACRDVI 87 (309)
T ss_dssp EEETTEEEEGGGCCCCTTCHHHHHCCEEECCEEEECCTTSS-EEETHHHHHHHHHHHHHHHTCCCCSCHHHHHHHHHHHH
T ss_pred EEECCEEEEhHHcccCccchHHhccceeEEEEEEEECCCCc-EEcCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999887884 579999999999999999999976 9999999999999
Q ss_pred HhcCCCCCCCCCceEEEEEEEEeeCCCcccCCC--CCeEEEEEEeecCCCccCC--CCCeEEEEecCccccCCCC-cCch
Q 024053 164 LANKRWVPPPGKGSLYIRPLLVGSGPILGLAPA--PEYTFLVFASPVGNYFKEG--LAPLNLYVEDEFHRATPGG-AGGV 238 (273)
Q Consensus 164 ~~n~~~vP~~~~~~lYIRp~v~~~~~~lg~~p~--~~~~~~I~~~P~~~y~~~~--~~gv~l~v~~~~~R~~p~g-~~~i 238 (273)
+.|+. .++|||++++++...+|+.|+ .+++++|.+.|+++|+... .+|+++.++ ++.|..+++ ++++
T Consensus 88 ~~~~~-------~~~~iR~~v~~g~~~~g~~p~~~~~~~~~i~~~p~~~~~~~~~~~~gv~l~~~-~~~r~~~~~~~~~~ 159 (309)
T 1iye_A 88 RKNNL-------TSAYIRPLIFVGDVGMGVNPPAGYSTDVIIAAFPWGAYLGAEALEQGIDAMVS-SWNRAAPNTIPTAA 159 (309)
T ss_dssp HHTTC-------SSEEEEEEEEECSSCSSSSCCTTCCEEEEEEEECCCCTTCTTHHHHCEEEEEC-SSCCCCTTTSCTTS
T ss_pred HhcCC-------CCEEEEEEEEeCCCccCCCCCCCCCcEEEEEEEEcCccCCcccccCCeEEEEe-eeeccCCCCCCccc
Confidence 99874 679999999999888888765 2789999999999887644 379999999 578988886 6899
Q ss_pred hhhccHHHHHHH--------hccEEEEeCCCCEEEecccccC
Q 024053 239 KAISNYAPVSEY--------FSLMLFAKKLNDHNTTLPAISL 272 (273)
Q Consensus 239 Kt~gNY~~~l~a--------~deaL~LD~~g~~~~~~~~~~~ 272 (273)
|+++||++++++ |||+||||.+|+ .+|++++.+
T Consensus 160 K~~~ny~~~~la~~~A~~~G~de~l~ld~~G~-V~Egs~sNi 200 (309)
T 1iye_A 160 KAGGNYLSSLLVGSEARRHGYQEGIALDVNGY-ISEGAGENL 200 (309)
T ss_dssp CBGGGHHHHHHHHHHHHHTTCSEEEEECTTSB-EEEETTBEE
T ss_pred cchhhhHHHHHHHHHHHHcCCCEEEEECCCCc-EEEcCceEE
Confidence 987799998876 999999999885 578887654
No 10
>3daa_A D-amino acid aminotransferase; pyridoxal phosphate, transaminase; HET: PDD; 1.90A {Bacillus SP} SCOP: e.17.1.1 PDB: 4daa_A* 3lqs_A* 1daa_A* 2daa_A* 5daa_A* 1g2w_A* 1a0g_A* 2dab_A*
Probab=100.00 E-value=2.5e-33 Score=255.56 Aligned_cols=169 Identities=12% Similarity=0.122 Sum_probs=143.4
Q ss_pred eEEcCEEeeCCCeeeCcCCCceeeCCeEEeEEEEEEcCCCeEeeeChhhHHHHHHHhHhhcCCCCC-CHHHHHHHHHHHH
Q 024053 85 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTA 163 (273)
Q Consensus 85 ~w~nG~ivp~~~~~Is~~d~gl~YGdgvFEglrayr~~dG~i~lFrld~Hl~RL~~Sa~~L~ip~p-~~e~l~e~i~elv 163 (273)
+|+||+++|.+++.|++.|+|||||||||||||+| +| ++|++++|++||++||++|+||.| +.++|.+++++++
T Consensus 3 ~~~nG~~~~~~~~~i~~~d~g~~yGdgvFEtir~~---~g--~~f~l~~Hl~RL~~Sa~~l~i~~~~~~~~l~~~i~~li 77 (277)
T 3daa_A 3 TLWNDQIVKDEEVKIDKEDRGYQFGDGVYEVVKVY---NG--EMFTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHELV 77 (277)
T ss_dssp EEETTEEEEGGGCCBCTTBHHHHTCCEEEEEEEEE---TT--EETTHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHH
T ss_pred EEECCEEeEhHHCeechhhhHHhcccEEEEEEEEE---CC--EEcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999 99 679999999999999999999977 9999999999999
Q ss_pred HhcCCCCCCCCCceEEEEEEEEeeCCCcccCC---CCCeEEEEEEeecCCCccCCCCCeEEEEecCccccCCCCcCchhh
Q 024053 164 LANKRWVPPPGKGSLYIRPLLVGSGPILGLAP---APEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKA 240 (273)
Q Consensus 164 ~~n~~~vP~~~~~~lYIRp~v~~~~~~lg~~p---~~~~~~~I~~~P~~~y~~~~~~gv~l~v~~~~~R~~p~g~~~iKt 240 (273)
++|+. .+.+||+.+++|.+.++..+ ..+++++|++.|++++.....+|+++.+++ ..|. ..+++|+
T Consensus 78 ~~n~~-------~~~~lri~vtrG~~~r~~~~p~~~~~~~~~i~~~p~~~~~~~~~~gv~~~~~~-~~r~---~~~~~Kt 146 (277)
T 3daa_A 78 EKNEL-------NTGHIYFQVTRGTSPRAHQFPENTVKPVIIGYTKENPRPLENLEKGVKATFVE-DIRW---LRCDIKS 146 (277)
T ss_dssp HHHTC-------CSEEEEEEEESCBCSCCSSCCSSCCCCEEEEEEEECCCCHHHHHHCEEEEEEE-CCCC---SCTTSCB
T ss_pred HhcCC-------CcEEEEEEEEecCCCcCCCCCCCCCCcEEEEEEEECCCChHHHhCCeEEEEec-Cccc---cCCCcch
Confidence 99975 46788888888877666553 347899999999985432223699999984 3443 3578998
Q ss_pred hccHHHHHHH--------hccEEEEeCCCCEEEecccccC
Q 024053 241 ISNYAPVSEY--------FSLMLFAKKLNDHNTTLPAISL 272 (273)
Q Consensus 241 ~gNY~~~l~a--------~deaL~LD~~g~~~~~~~~~~~ 272 (273)
+ ||++++++ |||+|||| + ...+|++++.+
T Consensus 147 ~-nyl~~~la~~eA~~~g~~e~l~l~-~-g~v~E~~~sNi 183 (277)
T 3daa_A 147 L-NLLGAVLAKQEAHEKGCYEAILHR-N-NTVTEGSSSNV 183 (277)
T ss_dssp S-CCHHHHHHHHHHHHTTCSEEEEEE-T-TEEEEETTBEE
T ss_pred h-hhHHHHHHHHHHHHCCCCEEEEEc-C-CEEEEcCceEE
Confidence 7 99999876 99999997 4 46788888754
No 11
>3sno_A Hypothetical aminotransferase; D-aminoacid aminotransferase-like PLP-dependent enzymes, STR genomics; HET: MSE; 1.60A {Corynebacterium glutamicum}
Probab=99.98 E-value=2.3e-32 Score=253.68 Aligned_cols=172 Identities=15% Similarity=0.148 Sum_probs=126.9
Q ss_pred eEEc---CEE--eeCCCeeeCcCCCceeeCCeEEeEEEEEEcCCCeEeeeChhhHHHHHHHhHhhcCCCCCCHHHHHHHH
Q 024053 85 YFEK---GRL--SRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAV 159 (273)
Q Consensus 85 ~w~n---G~i--vp~~~~~Is~~d~gl~YGdgvFEglrayr~~dG~i~lFrld~Hl~RL~~Sa~~L~ip~p~~e~l~e~i 159 (273)
+|+| |++ +|.+++.|++.|+||+||||||||||+| +| .+|++++|++||.+||++|+||.|+.+++.+++
T Consensus 17 v~~n~~~G~~~~~~~~~a~i~~~Drg~~yGdgvFEtirv~---~G--~~~~l~~Hl~RL~~Sa~~L~i~~p~~~~l~~~i 91 (315)
T 3sno_A 17 LIVEPYGGSIRQQNPNLPMVFWDDAALTRGDGIFETLLIR---DG--HACNVRRHGERFKASAALLGLPEPILEDWEKAT 91 (315)
T ss_dssp EEECSTTCCEEEECTTSCCCCTTBTTTTTCCEEEEEEEEE---TT--EETTHHHHHHHHHHHHHHHTCCCCCHHHHHHHH
T ss_pred EEEECCCCeEEEeeHHHCcccccchHhhcCCEeEEEEEEE---CC--EECCHHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Confidence 7899 999 9999999999999999999999999999 99 679999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCCceEEEEEEEEeeCCCcccCCCCCeEEEEEEeecCCCccCC-CCCeEEEEecCc-----------
Q 024053 160 KQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEG-LAPLNLYVEDEF----------- 227 (273)
Q Consensus 160 ~elv~~n~~~vP~~~~~~lYIRp~v~~~~~~lg~~p~~~~~~~I~~~P~~~y~~~~-~~gv~l~v~~~~----------- 227 (273)
+++++++.. ..+..++|||+++++|.+.+| .++++|++.|+++++.+. .+|+++.+++..
T Consensus 92 ~~~v~~~~~---~n~~~~~~iRl~vtrG~~~~g-----~p~~~v~~~p~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~ 163 (315)
T 3sno_A 92 QMGIESWYS---HPNAGEASCTWTLSRGRSSTG-----LASGWLTITPVSSDKLAQREHGVSVMTSSRGYSIDTGLPGIG 163 (315)
T ss_dssp HHHHHHHHT---C--CCCEEEEEEEECCBTTTC-----CCEEEEEEEECCHHHHHHHHHCEEEEEEEC------------
T ss_pred HHHHHhhcc---cCCCCCEEEEEEEEeCCCCCC-----CCEEEEEEEECCCcchhhhcCCEEEEEecccccccccccccc
Confidence 999998311 001267999999999876554 368899999988665322 378999888421
Q ss_pred -----------cccCCCCcCchhhhccHHHHHHH--------hccEEEEeCCCCEEEecccccC
Q 024053 228 -----------HRATPGGAGGVKAISNYAPVSEY--------FSLMLFAKKLNDHNTTLPAISL 272 (273)
Q Consensus 228 -----------~R~~p~g~~~iKt~gNY~~~l~a--------~deaL~LD~~g~~~~~~~~~~~ 272 (273)
.|..|++++++||+ ||++++++ |||+||||.+| .+|++++.+
T Consensus 164 ~~~r~~~s~~~~~~~p~~l~~~Kt~-nyl~~vla~~~A~~~G~de~l~l~~~G--v~E~s~sN~ 224 (315)
T 3sno_A 164 KATRGELSKVERTPAPWLTVGAKTL-AYAANMAALRYAKSNGFDDVIFTDGDR--VLEGATSTV 224 (315)
T ss_dssp ------------------------------------------CEEEEEEETTE--EEEESSSEE
T ss_pred ccccccccccccccCcccccCcchh-ccHHHHHHHHHHHHcCCCEEEEEeCCC--cEEcCCeeE
Confidence 12345557899998 99999877 99999999998 889988764
No 12
>3lul_A 4-amino-4-deoxychorismate lyase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2, pyridoxal phosphate; HET: MSE LLP; 1.78A {Legionella pneumophila}
Probab=99.98 E-value=1.2e-31 Score=243.70 Aligned_cols=164 Identities=18% Similarity=0.129 Sum_probs=138.7
Q ss_pred eEEcCEEeeCCCeeeCcCCCceeeCCeEEeEEEEEEcCCCeEeeeChhhHHHHHHHhHhhcCCCCC-CHHHHHHHHHHHH
Q 024053 85 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTA 163 (273)
Q Consensus 85 ~w~nG~ivp~~~~~Is~~d~gl~YGdgvFEglrayr~~dG~i~lFrld~Hl~RL~~Sa~~L~ip~p-~~e~l~e~i~elv 163 (273)
+|+|| .+++.||+.|+|||||||||||||+| +| .+|++++|++||++||++|+||.| +.++|.+++.+++
T Consensus 6 ~~~nG----~~~a~i~~~d~g~~yG~gvFEtir~~---~g--~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~l~ 76 (272)
T 3lul_A 6 VIEDK----GDMTPSFGIDDRIFLGEGLFETIRVN---SS--KPSFAYMHWERLGNSARQLGIPFEISFDDWFEHLIQKI 76 (272)
T ss_dssp ECCCC----C--CCCCCTTBGGGGTCEEEEEEEEE---TT--EESSHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHH
T ss_pred EEECC----ccccccCCccchhhcceEeEEEEEEE---CC--EeCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 78999 78899999999999999999999999 99 679999999999999999999998 9999999999999
Q ss_pred HhcCCCCCCCCCceEEEEEEEEeeCCCcccCCCC--CeEEEEEEeecCCCccCCCCCeEEEEecCccccCCCCcCchhhh
Q 024053 164 LANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAP--EYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAI 241 (273)
Q Consensus 164 ~~n~~~vP~~~~~~lYIRp~v~~~~~~lg~~p~~--~~~~~I~~~P~~~y~~~~~~gv~l~v~~~~~R~~p~g~~~iKt~ 241 (273)
++|+. .++|||++++++.+.+|+.++. .++++++ .|. .. ...++++.++ ++.|+.+++++++|++
T Consensus 77 ~~~~~-------~~~~irl~v~rg~~~~g~~~~~~~~~~~~~~-~p~---~~-~~~~v~l~~~-~~~r~~~~~~~~~Kt~ 143 (272)
T 3lul_A 77 QKDNL-------YHGGIKAILSGGPASRGLAERGQVSQLIFQT-FNY---SI-QKHPVRLISI-NWLRDKANPLYQLKSV 143 (272)
T ss_dssp HHTTC-------SSEEEEEEEECCBCCSSTTCCCSSEEEEEEE-ECC---CC-CCSCEEEEEE-EEEECTTCGGGGSCBS
T ss_pred HhcCC-------CCEEEEEEEEecCCccCcCCCCCCCcEEEEE-ECC---CC-ccccEEEEEE-eEEecCCCcccchhhh
Confidence 99875 6799999999998888887654 3566655 443 22 2246999888 6889877789999997
Q ss_pred ccHHHHHHH--------hccEEEEeCCCCEEEecccccC
Q 024053 242 SNYAPVSEY--------FSLMLFAKKLNDHNTTLPAISL 272 (273)
Q Consensus 242 gNY~~~l~a--------~deaL~LD~~g~~~~~~~~~~~ 272 (273)
||++++++ |||+||||.+|+ .+|++++.+
T Consensus 144 -nyl~~~la~~~A~~~G~de~L~ld~~g~-v~E~~~sNi 180 (272)
T 3lul_A 144 -NYLEAIIAQRQAIAVGADDALFFNTENH-VTETTCANL 180 (272)
T ss_dssp -CCHHHHHHHHHHHHTTCSEEEEEETTSB-EEEESSCEE
T ss_pred -ccHHHHHHHHHHHHcCCCEEEEECCCCe-EEEcCCeEE
Confidence 99999876 999999999885 577777654
No 13
>1i2k_A 4-amino-4-deoxychorismate lyase; pyridoxal phosphate, PABC; HET: PLP; 1.79A {Escherichia coli} SCOP: e.17.1.1 PDB: 1et0_A* 1i2l_A*
Probab=99.97 E-value=8.1e-32 Score=243.81 Aligned_cols=167 Identities=15% Similarity=0.137 Sum_probs=143.6
Q ss_pred eEEcCEEeeCCCeeeCcCCCceeeCCeEEeEEEEEEcCCCeEeeeChhhHHHHHHHhHhhcCCCCCCHHHHHHHHHHHHH
Q 024053 85 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTAL 164 (273)
Q Consensus 85 ~w~nG~ivp~~~~~Is~~d~gl~YGdgvFEglrayr~~dG~i~lFrld~Hl~RL~~Sa~~L~ip~p~~e~l~e~i~elv~ 164 (273)
+|+||+ .++.|++.|+|||||||||||||+| +| ++|++++|++||.+||++|+||.++.++|.+++.++++
T Consensus 2 ~~~nG~----~~~~i~~~d~g~~yG~gvfEtir~~---~G--~~~~l~~Hl~RL~~Sa~~l~~~~~~~~~l~~~i~~~~~ 72 (269)
T 1i2k_A 2 FLINGH----KQESLAVSDRATQFGDGCFTTARVI---DG--KVSLLSAHIQRLQDACQRLMISCDFWPQLEQEMKTLAA 72 (269)
T ss_dssp EEETTE----EESCCCTTCHHHHHCCEEEEEEEEE---TT--EETTHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHH
T ss_pred EEECCC----cCCccCccccccccceeEEEEEEEE---CC--EEecHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence 589999 3578999999999999999999999 99 67999999999999999999998889999999999998
Q ss_pred hcCCCCCCCCCceEEEEEEEEeeCCCcccCCC--CCeEEEEEEeecCCCccC-CCCCeEEEEecCccccCCCCcCchhhh
Q 024053 165 ANKRWVPPPGKGSLYIRPLLVGSGPILGLAPA--PEYTFLVFASPVGNYFKE-GLAPLNLYVEDEFHRATPGGAGGVKAI 241 (273)
Q Consensus 165 ~n~~~vP~~~~~~lYIRp~v~~~~~~lg~~p~--~~~~~~I~~~P~~~y~~~-~~~gv~l~v~~~~~R~~p~g~~~iKt~ 241 (273)
.+. ++|||++++++.+.+|+.|+ .+++++|.+.|+++++.+ ..+|+++.++ +.+|..+..++++|++
T Consensus 73 ~~~---------~~~iR~~v~~g~~~~g~~p~~~~~~~~~i~~~p~~~~~~~~~~~g~~l~~~-~~~~~~~~~~~~~Kt~ 142 (269)
T 1i2k_A 73 EQQ---------NGVLKVVISRGSGGRGYSTLNSGPATRILSVTAYPAHYDRLRNEGITLALS-PVRLGRNPHLAGIKHL 142 (269)
T ss_dssp HHC---------SEEEEEEEECCSCCSTTCCTTCCCCEEEEEEECCCSHHHHHHHHCEEEEEC-SCCBCCCTTTTBCCBS
T ss_pred hCC---------CeEEEEEEEcCCCCCCCCCccCCCcEEEEEEEECCCcchhhhcCCeEEEEe-ceecCCCCcccCcchh
Confidence 652 58999999999888888765 378999999999876532 1368999998 4667666678999997
Q ss_pred ccHHHHHHH--------hccEEEEeCCCCEEEecccccC
Q 024053 242 SNYAPVSEY--------FSLMLFAKKLNDHNTTLPAISL 272 (273)
Q Consensus 242 gNY~~~l~a--------~deaL~LD~~g~~~~~~~~~~~ 272 (273)
||+.++++ |||+||+|.+|+ .+|++++.+
T Consensus 143 -n~~~~~~a~~~A~~~G~de~l~ld~~G~-v~E~s~sNi 179 (269)
T 1i2k_A 143 -NRLEQVLIRSHLEQTNADEALVLDSEGW-VTECCAANL 179 (269)
T ss_dssp -CCHHHHHHHHHHTTSSCSEEEEEBTTSB-EEECSSSEE
T ss_pred -hhHHHHHHHHHHHHCCCCEEEEECCCCc-EEEcCceEE
Confidence 99998876 899999999886 578887754
No 14
>2xpf_A 4-amino-4-deoxychorismate lyase; para-aminobenzoic acid, folate biosynthesis; HET: PLP PG4; 1.75A {Pseudomonas aeruginosa} PDB: 2y4r_A* 2xpf_B*
Probab=99.97 E-value=2.3e-31 Score=244.16 Aligned_cols=166 Identities=20% Similarity=0.200 Sum_probs=142.6
Q ss_pred eEEcCEEeeCCCeeeCcCCCceeeCCeEEeEEEEEEcCCCeEeeeChhhHHHHHHHhHhhcCCCCCCHHHHHHHHHHHHH
Q 024053 85 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTAL 164 (273)
Q Consensus 85 ~w~nG~ivp~~~~~Is~~d~gl~YGdgvFEglrayr~~dG~i~lFrld~Hl~RL~~Sa~~L~ip~p~~e~l~e~i~elv~ 164 (273)
+|+||+++ +.|++.|+||+||||||||||+| || .+|++++|++||++||++|+||.| .++|.+++.++++
T Consensus 24 ~~~nG~~~----~~i~~~d~g~~yGdgvFEtir~~---~G--~~~~l~~Hl~RL~~Sa~~l~~~~~-~~~l~~~i~~~v~ 93 (292)
T 2xpf_A 24 DWVDGRPA----AELSVRDRGLAYGDGLFETLAVR---AG--TPRLLERHLARLEEGCRRLAIPLD-TAALRQELLAFCA 93 (292)
T ss_dssp EEETTEEC----SEEETTBHHHHHCCEEEEEEEEE---TT--EETTHHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHH
T ss_pred EEECCEEE----EEEcccchhhhcCcEeEEEEEEE---CC--EECCHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHH
Confidence 79999998 78999999999999999999999 99 578999999999999999999986 8999999999998
Q ss_pred hcCCCCCCCCCceEEEEEEEEeeCCCcccCCCC--CeEEEEEEeecCCCccCC-CCCeEEEEecCccccCCCCcCchhhh
Q 024053 165 ANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAP--EYTFLVFASPVGNYFKEG-LAPLNLYVEDEFHRATPGGAGGVKAI 241 (273)
Q Consensus 165 ~n~~~vP~~~~~~lYIRp~v~~~~~~lg~~p~~--~~~~~I~~~P~~~y~~~~-~~gv~l~v~~~~~R~~p~g~~~iKt~ 241 (273)
.. .++|||++++++.+.+|+.|+. +++++|.+.|+++++.+. .+|+++.+++ +.|.....++++|++
T Consensus 94 ~~---------~~~~iR~~v~rg~~~~g~~p~~~~~~~~~i~~~p~~~~~~~~~~~gv~l~~~~-~~~~~~~~~~~~Kt~ 163 (292)
T 2xpf_A 94 AL---------GDGVAKLIVTRGEGLRGYAPPAEASPRRILSGSPRPAYPERHWQQGVRLFACR-TRLAEQPLLAGLKHL 163 (292)
T ss_dssp HH---------CSEEEEEEEECCBCCSSSSCCTTCCCEEEEEEECCCCCCHHHHHTCEEEEECC-CCBCCCTTTTBCCBS
T ss_pred hC---------CCcEEEEEEEecCCCCCCCCCCCCCcEEEEEEEECCccchhhccCCeEEEEee-eeccCCCCCCCcchh
Confidence 74 2479999999988788887653 689999999998776321 3689999995 556554568899987
Q ss_pred ccHHHHHHH--------hccEEEEeCCCCEEEecccccC
Q 024053 242 SNYAPVSEY--------FSLMLFAKKLNDHNTTLPAISL 272 (273)
Q Consensus 242 gNY~~~l~a--------~deaL~LD~~g~~~~~~~~~~~ 272 (273)
||+.++++ |||+||||.+|+ .+|++++.+
T Consensus 164 -ny~~~~la~~~A~~~G~de~L~ld~~G~-V~Egs~sNi 200 (292)
T 2xpf_A 164 -NRLEQVLARAEWSDAGHAEGLMLDVHER-VVEGVFSNL 200 (292)
T ss_dssp -CCHHHHHHHTTCCCTTCSEEEEEBTTCC-EEEESSSEE
T ss_pred -hhHHHHHHHHHHHHcCCCEEEEECCCCC-EEEcCCeEE
Confidence 99999877 899999999986 678887654
No 15
>2zgi_A Putative 4-amino-4-deoxychorismate lyase; TTHA0621, PLP cofactor, pyridoxal enzyme, structural NPPSFA; HET: PLP PGE; 1.93A {Thermus thermophilus}
Probab=99.94 E-value=8.7e-28 Score=215.01 Aligned_cols=153 Identities=16% Similarity=0.131 Sum_probs=124.2
Q ss_pred eEEcCEEeeCCCeeeCcCCCceee-CCeEEeEEEEEEcCCCeEeeeChhhHHHHHHHhHhhcCCCCCCHHHHHHHHHHHH
Q 024053 85 YFEKGRLSRYGKIELSPSSGVLNY-GQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTA 163 (273)
Q Consensus 85 ~w~nG~ivp~~~~~Is~~d~gl~Y-GdgvFEglrayr~~dG~i~lFrld~Hl~RL~~Sa~~L~ip~p~~e~l~e~i~elv 163 (273)
.|+||+.+ +++.|+||+| |||||||||+| +| .+|++++|++||.+||++|+||.|..++|.+++.+++
T Consensus 2 ~~~nG~~~------~~~~d~g~~y~G~gvFEtir~~---~G--~~~~l~~Hl~RL~~Sa~~l~~~~p~~~~l~~~i~~~~ 70 (246)
T 2zgi_A 2 RLLNGTPL------ALALPEAFLYHGASVFTTLRAE---GG--RPLWLEEHLARLRRHALALGLSYPGDEAFLEDLEALL 70 (246)
T ss_dssp EEETTEEC------CCSSCHHHHHSCCCEEEEEEEE---TT--EETTHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHT
T ss_pred EEECCccc------CCCccCcccccCeeEEEEEEEE---CC--EeCCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 58999954 4999999999 99999999999 99 6799999999999999999999873399999999999
Q ss_pred Hhc-CCCCCCCCCceEEEEEEEEeeCCCcccCCCCCeEEEEEEeecCCCccCC-CCCeEEEEecCccccCCCCcCchhhh
Q 024053 164 LAN-KRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEG-LAPLNLYVEDEFHRATPGGAGGVKAI 241 (273)
Q Consensus 164 ~~n-~~~vP~~~~~~lYIRp~v~~~~~~lg~~p~~~~~~~I~~~P~~~y~~~~-~~gv~l~v~~~~~R~~p~g~~~iKt~ 241 (273)
+.| +. +++|||++++++++.+++. |........ .+|+++.+++ + |..|+ ++++|++
T Consensus 71 ~~~~~~-------~~~~vR~~v~~g~~~~~~~------------p~~~~~~~~~~~g~~l~~~~-~-r~~~~-~~~~Kt~ 128 (246)
T 2zgi_A 71 RAFPKA-------PCLRLRFTVGEGVRLSEAR------------PYAPLPLSLYREGVRVRLTG-Y-RVHPD-LARYKTG 128 (246)
T ss_dssp TSCTTC-------SEEEEEEEEETTEEEEEEE------------ECCCCCTHHHHHCBCEEEEE-E-ECCTT-TTTSCBS
T ss_pred HhcCCC-------CCEEEEEEEECCCCccCcC------------cCCCCchhHhhcCeEEEEec-c-cCCCC-Cccchhh
Confidence 887 43 6899999999876555442 222111110 2589999984 5 88887 8899999
Q ss_pred ccHHHHHHH--------hccEEEEeCCCCEEEecccccC
Q 024053 242 SNYAPVSEY--------FSLMLFAKKLNDHNTTLPAISL 272 (273)
Q Consensus 242 gNY~~~l~a--------~deaL~LD~~g~~~~~~~~~~~ 272 (273)
||+.++++ |||+||+|.+|+ .+|++++.+
T Consensus 129 -n~~~~~~a~~~A~~~g~de~l~ld~~G~-v~Egs~sNi 165 (246)
T 2zgi_A 129 -NYLPYRLALEEARKEGAFEGLLLDAFGH-VVDGSRTSP 165 (246)
T ss_dssp -CCHHHHHHHHHHHTTTCSEEEEECTTSC-EEEESSSEE
T ss_pred -hhHHHHHHHHHHHHcCCCEEEEECCCCC-EEEcCCeEE
Confidence 89998875 899999999986 567877654
No 16
>3csw_A BCAT, putative branched-chain-amino-acid aminotransfera; TM0831, putative branched-chain amino acid aminotransferase; HET: PLP CIT; 2.15A {Thermotoga maritima MSB8}
Probab=99.94 E-value=5.8e-27 Score=214.18 Aligned_cols=157 Identities=16% Similarity=0.120 Sum_probs=132.3
Q ss_pred EEcCEEeeCCCeeeCcCCCceeeCCeEEeEEEEEEcCCCeEeeeChhhHHHHHHHhHhhcCCCCC-CHHHHHHHHHHHHH
Q 024053 86 FEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTAL 164 (273)
Q Consensus 86 w~nG~ivp~~~~~Is~~d~gl~YGdgvFEglrayr~~dG~i~lFrld~Hl~RL~~Sa~~L~ip~p-~~e~l~e~i~elv~ 164 (273)
|.+|++++..+++|++.|+|| |||||||||+| +| .+|++++|++||++||++|+||.| +.+++.+++.++++
T Consensus 18 ~~~~~~~~~~~~~i~~~d~g~--G~gvFEtir~~---~G--~~~~l~~Hl~RL~~Sa~~l~~~~p~~~~~l~~~i~~~~~ 90 (285)
T 3csw_A 18 RGKFRRADEISLDFSLFEKSL--QGAVYETLRTY---SR--APFAAYKHYTRLKRSADFFNLPLSLSFDEFTKVLKAGAD 90 (285)
T ss_dssp TTEEEESSEEEEEHHHHHHHT--TCCEEEEEEEE---TT--EETTHHHHHHHHHHHHHTTTCCCSSCHHHHHHHHHHHHT
T ss_pred ccCceEcccccCEeCCccccc--ceeeEEEEEEE---CC--EECCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 889999999999999999999 99999999999 99 579999999999999999999977 99999999999998
Q ss_pred hcCCCCCCCCCceEEEEEEEEeeCCCcccCCCCCeEEEEEEeecCCCccCCCCCeEEEEecCccccCCC-CcCchhhhcc
Q 024053 165 ANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPG-GAGGVKAISN 243 (273)
Q Consensus 165 ~n~~~vP~~~~~~lYIRp~v~~~~~~lg~~p~~~~~~~I~~~P~~~y~~~~~~gv~l~v~~~~~R~~p~-g~~~iKt~gN 243 (273)
.|+ +++|||+++. |. .++++|.+.|+++++ ..+|+++.++ ++.|...+ .+.++|++ |
T Consensus 91 ~~~--------~~~~iR~~v~---------~~-~~~~~i~~~p~~~~~--~~~~~~l~~~-~~~~~~~~~~~~~~Kt~-~ 148 (285)
T 3csw_A 91 EFK--------QEVRIKVYLF---------PD-SGEVLFVFSPLNIPD--LETGVEVKIS-NVRRIPDLSTPPALKIT-G 148 (285)
T ss_dssp TCS--------SCEEEEEEEC---------TT-TCCEEEEEEECCCCC--CTTCEEEEEC-SSCCCCTTTSCTTCCBT-T
T ss_pred hhC--------CCeEEEEEEE---------cC-CCEEEEEEEeCCCcc--ccCCeEEEEE-eEEecCCCCCCCccchh-c
Confidence 874 2489999982 11 126888899998765 2368999998 45564433 35799999 6
Q ss_pred HHHHHHH------hccEEEEeCCCCEEEecccccC
Q 024053 244 YAPVSEY------FSLMLFAKKLNDHNTTLPAISL 272 (273)
Q Consensus 244 Y~~~l~a------~deaL~LD~~g~~~~~~~~~~~ 272 (273)
|++++++ |||+||+|.+|+ .+|++++.+
T Consensus 149 ~l~~~la~~~A~~~de~L~ld~~G~-V~Egs~sNi 182 (285)
T 3csw_A 149 RTDIVLARREIVDCYDVILLGLNGQ-VCEGSFSNV 182 (285)
T ss_dssp CHHHHHHHTTCSSSSEEEEECTTSB-EEEESSSEE
T ss_pred cHHHHHHHHHHHhCCeEEEECCCCc-EEEcCceEE
Confidence 9999877 899999999886 578887654
No 17
>3qqm_A MLR3007 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, transferase; HET: LLP; 2.30A {Mesorhizobium loti}
Probab=99.87 E-value=9e-22 Score=173.73 Aligned_cols=137 Identities=13% Similarity=0.053 Sum_probs=113.3
Q ss_pred eeCCeEEeEEEEEEcCCCeEeeeChhhHHHHHHHhHhhcCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEEEEe
Q 024053 107 NYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVG 186 (273)
Q Consensus 107 ~YGdgvFEglrayr~~dG~i~lFrld~Hl~RL~~Sa~~L~ip~p~~e~l~e~i~elv~~n~~~vP~~~~~~lYIRp~v~~ 186 (273)
.-|+|||||||+|+ +| .+|++++|++||++||++|+||. +.+++.+++.++++ +.. +.+|||+++++
T Consensus 13 ~~g~glFEtir~~~--~G--~~~~l~~Hl~RL~~Sa~~l~~~~-~~~~l~~~i~~~~~-~~~-------~~~~iR~~~~~ 79 (221)
T 3qqm_A 13 TADFELIETMRWQP--GT--SFLRFDRHLARLYGSAAELGFAC-DPQRIAEVLSDALD-GAR-------TAMRTRLALAR 79 (221)
T ss_dssp TSCCEEEEEEEEET--TT--EETTHHHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHT-TCC-------SCEEEEEEEET
T ss_pred CCCCEEEEEEEEec--CC--cCcCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHh-cCC-------CCEEEEEEEEc
Confidence 46899999999993 67 57999999999999999999985 78999999999997 433 67999999987
Q ss_pred eCCCcccCCCCCeEEEEEEeecCCCccCCCCCeEEEEecCccccCCCCcCchhhhccHHHHHHH--------hccEEEEe
Q 024053 187 SGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVSEY--------FSLMLFAK 258 (273)
Q Consensus 187 ~~~~lg~~p~~~~~~~I~~~P~~~y~~~~~~gv~l~v~~~~~R~~p~g~~~iKt~gNY~~~l~a--------~deaL~LD 258 (273)
++ .+.|.+.|+++++. .+|+++.+++ +.|..++.++++|++ ||+.++++ |||+||+|
T Consensus 80 ~g-----------~~~i~~~p~~~~~~--~~~~~l~~~~-~~~~~~~~~~~~Kt~-nr~~~~~a~~~a~~~g~~e~l~l~ 144 (221)
T 3qqm_A 80 NG-----------DATASAQPYEPLAA--DKVWILRLAR-TRLDSQNTLLRHKTS-RRQLYTHARSEYLVTQADEVLLAN 144 (221)
T ss_dssp TS-----------CEEEEEEECCCCCT--TCCEEEEECS-CCBCTTCGGGGSCBS-CCHHHHHHHHTSCTTTCSEEEEEB
T ss_pred CC-----------CEEEEEEcCCCCCC--CCCEEEEEee-eEecCCCcchhchhc-chHHHHHHHHHHHhcCCcEEEEEC
Confidence 53 36778889887653 2689999994 677777779999997 99998876 89999999
Q ss_pred CCCCEEEecccccC
Q 024053 259 KLNDHNTTLPAISL 272 (273)
Q Consensus 259 ~~g~~~~~~~~~~~ 272 (273)
.+|+ .+|++++.+
T Consensus 145 ~~g~-v~E~s~sNi 157 (221)
T 3qqm_A 145 ERGE-ICEGTITNV 157 (221)
T ss_dssp TTSC-EEEESSCEE
T ss_pred CCCe-EEEcCceeE
Confidence 9885 567776653
No 18
>3ceb_A D-aminoacid aminotransferase-like PLP-dependent E; joint center for structural genomics, protein structure initiative, PSI-2, lyase; HET: LLP; 2.40A {Haemophilus somnus}
Probab=99.79 E-value=2.2e-19 Score=154.77 Aligned_cols=128 Identities=10% Similarity=-0.030 Sum_probs=93.9
Q ss_pred eeCCeEEeEEEEEEcCCCeEeeeChhhHHHHHHHhH-hhcCCC--CC-CHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE
Q 024053 107 NYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGA-ERMCMP--SP-SIDQFIDAVKQTALANKRWVPPPGKGSLYIRP 182 (273)
Q Consensus 107 ~YGdgvFEglrayr~~dG~i~lFrld~Hl~RL~~Sa-~~L~ip--~p-~~e~l~e~i~elv~~n~~~vP~~~~~~lYIRp 182 (273)
+||+|||||||+| +| .+|++++|++||++|| ++|+|| .| +.+++.+++. ++++|+. +++|||+
T Consensus 2 ~~g~~vfEt~r~~---~g--~~~~l~~Hl~RL~~Sa~~~l~~~~~~~~~~~~~~~~i~-~~~~~~~-------~~~~iR~ 68 (194)
T 3ceb_A 2 MWQFPLFETILIE---QG--QAKNISYHQQRYEKSLLKFYPKMKLQPFDLAKIIAKHT-ALFTHRE-------GLIRCRI 68 (194)
T ss_dssp CTTCCEEEEEEEE---TT--EECSHHHHHHHHHHHHHHHSTTCCCCCCCHHHHHHTCG-GGGSCSS-------SEEEEEE
T ss_pred CCCCeEEEEEEEE---CC--EecCHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHH-HHhhCCC-------CCEEEEE
Confidence 7999999999999 99 5799999999999999 999999 55 9999999998 8887764 6899999
Q ss_pred EEEeeCCCcccCCCCCeEEEEEEeecCCCccCCCCCeEEEEecCccccCCCCcCchhhhccHH--HHHHH----hccEEE
Q 024053 183 LLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYA--PVSEY----FSLMLF 256 (273)
Q Consensus 183 ~v~~~~~~lg~~p~~~~~~~I~~~P~~~y~~~~~~gv~l~v~~~~~R~~p~g~~~iKt~gNY~--~~l~a----~deaL~ 256 (273)
+++++. .+ +...|..+ .++ ++ ......+..++++|++ ||+ +...| |||+||
T Consensus 69 ~~~~g~--~~----------~~~~p~~~------~~~---~~-~~~~~~~~~~~~~Kt~-n~~~~~~~~A~~~g~de~l~ 125 (194)
T 3ceb_A 69 DYNHHD--YV----------LQCFPYQQ------KVY---RT-FKPVFCDHIDYSLKFS-DRTLLNNLLKQKEECDEIMI 125 (194)
T ss_dssp EECSSC--EE----------EEEEEECC------CCC---CC-EEEEECSSCCCSSCBS-CCHHHHHHHGGGTTSSEEEE
T ss_pred EEeCCc--cE----------EEEecCCC------CcE---EE-EEEecCCCcchhhccc-CHHHHHHHHHhhCCCCEEEE
Confidence 998762 11 22233221 122 11 0111233457899987 887 22233 999999
Q ss_pred EeCCCCEEEecccccC
Q 024053 257 AKKLNDHNTTLPAISL 272 (273)
Q Consensus 257 LD~~g~~~~~~~~~~~ 272 (273)
+ .+| ..+|++++.+
T Consensus 126 l-~~G-~v~E~s~sNi 139 (194)
T 3ceb_A 126 I-RQG-KVTDCSIGNL 139 (194)
T ss_dssp E-ETT-EECCCSSSEE
T ss_pred E-eCC-EEEEeccEEE
Confidence 9 666 6688887754
Done!