RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 024053
(273 letters)
>3dth_A Branched-chain amino acid aminotransferase; open twisted
alpha/beta; HET: PLP OBZ; 1.85A {Mycobacterium
smegmatis} PDB: 3dtf_A* 3dtg_A* 3jz6_A* 3ht5_A*
Length = 372
Score = 298 bits (765), Expect = e-101
Identities = 80/214 (37%), Positives = 128/214 (59%), Gaps = 2/214 (0%)
Query: 35 YTSQAAASLQQDCEPSAYSDDESADHMDWDNLGFGLTPADYMYTMKCSNDY-FEKGRLSR 93
+ + L+ + ++ N GFG D+M ++ + D + ++
Sbjct: 2 HHHHNSGPLEFTVSANTNPATDAVRESILANPGFGKYYTDHMVSIDYTVDEGWHNAQVIP 61
Query: 94 YGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSID 153
YG I+L PS+ VL+YGQ +FEG+KAYR DG +V FRP+ NA RLQ+ A R+ +P +
Sbjct: 62 YGPIQLDPSAIVLHYGQEIFEGLKAYRWADGSIVSFRPEANAARLQSSARRLAIPELPEE 121
Query: 154 QFIDAVKQTALANKRWVPP-PGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYF 212
FI++++Q +++WVPP G+ SLY+RP ++ + P LG+ P+ EY +L+ ASP G YF
Sbjct: 122 VFIESLRQLIAVDEKWVPPAGGEESLYLRPFVIATEPGLGVRPSNEYRYLLIASPAGAYF 181
Query: 213 KEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAP 246
K G+ P+++++ E+ RA+PGG G K NYA
Sbjct: 182 KGGIKPVSVWLSHEYVRASPGGTGAAKFGGNYAA 215
>2a1h_A Branched chain aminotransferase; fold type IV; HET: PLP GBN; 1.80A
{Homo sapiens} SCOP: e.17.1.1 PDB: 1ekp_A* 1ekv_A*
1ekf_A* 1kta_A* 1kt8_A* 2hhf_B* 2hhf_A* 2hgw_A* 2hg8_A*
2hgx_A* 2hdk_A*
Length = 365
Score = 292 bits (749), Expect = 2e-98
Identities = 65/186 (34%), Positives = 102/186 (54%), Gaps = 1/186 (0%)
Query: 62 DWDNLGFGLTPADYMYTMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRK 121
+ L FG T D+M ++ ++ + + R+ + + L P+S L+Y LFEGMKA++
Sbjct: 24 PGEPLVFGKTFTDHMLMVEWNDKGWGQPRIQPFQNLTLHPASSSLHYSLQLFEGMKAFKG 83
Query: 122 EDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIR 181
+D Q+ LFRP N R+ A R+C+PS + ++ +++ +K WVP SLY+R
Sbjct: 84 KDQQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVR 143
Query: 182 PLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEG-LAPLNLYVEDEFHRATPGGAGGVKA 240
P+L+G+ P LG++ V PVG YF G + P++L + F RA GG G K
Sbjct: 144 PVLIGNEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKL 203
Query: 241 ISNYAP 246
NY P
Sbjct: 204 GGNYGP 209
>2coi_A Branched chain aminotransferase 1, cytosolic; PLP-dependent enzyme;
HET: PLP GBN; 1.90A {Homo sapiens} PDB: 2cog_A* 2coj_A*
2abj_A*
Length = 386
Score = 287 bits (736), Expect = 3e-96
Identities = 64/187 (34%), Positives = 100/187 (53%), Gaps = 2/187 (1%)
Query: 62 DWDNLGFGLTPADYMYTMKCSNDY-FEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYR 120
D +NL FG D+M T++ S+++ +EK + + L P S L+Y LFEG+KA+R
Sbjct: 43 DPNNLVFGTVFTDHMLTVEWSSEFGWEKPHIKPLQNLSLHPGSSALHYAVELFEGLKAFR 102
Query: 121 KEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYI 180
D ++ LF+P+ N R+ A R +P ++ ++ ++Q ++ WVP SLYI
Sbjct: 103 GVDNKIRLFQPNLNMDRMYRSAVRATLPVFDKEELLECIQQLVKLDQEWVPYSTSASLYI 162
Query: 181 RPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEG-LAPLNLYVEDEFHRATPGGAGGVK 239
RP +G+ P LG+ + V SPVG YF G P++L+ ++ RA GG G K
Sbjct: 163 RPTFIGTEPSLGVKKPTKALLFVLLSPVGPYFSSGTFNPVSLWANPKYVRAWKGGTGDCK 222
Query: 240 AISNYAP 246
NY
Sbjct: 223 MGGNYGS 229
>2eiy_A ILVE, branched-chain amino acid aminotransferase; PLP-dependent
enzyme; HET: PLP; 1.35A {Thermus thermophilus} PDB:
1wrv_A* 2ej0_A* 2ej2_A* 2ej3_A*
Length = 308
Score = 68.0 bits (167), Expect = 2e-13
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 13/113 (11%)
Query: 106 LNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTAL 164
L+YG +FEG++AY G + FR ++ R A+ + M P + ++ +A+K+
Sbjct: 29 LHYGTSVFEGIRAYETAKGPAI-FRLKEHVKRFYNSAKVLRMEIPFAPEELEEAIKEVVR 87
Query: 165 ANKRWVPPPGKGSLYIRPLL-VGSGPILGLAPAPEY--TFLVFASPVGNYFKE 214
N G S YIRPL +G+ LG+ P P +V A G Y E
Sbjct: 88 RN-------GYRSCYIRPLAWMGAKA-LGVNPLPNNPAEVMVAAWEWGAYLGE 132
>3u0g_A Putative branched-chain amino acid aminotransfera; structural
genomics, seattle structural genomics center for
infectious disease; 1.90A {Burkholderia pseudomallei}
Length = 328
Score = 67.6 bits (166), Expect = 3e-13
Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 11/112 (9%)
Query: 106 LNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTAL 164
L+YG G+FEG++AY+ DG +FR ++ RL A+ M P + A +
Sbjct: 52 LHYGMGVFEGVRAYKTADGGTAIFRLKEHTKRLLNSAKIFQMDVPFDQETLEAAQRDVVR 111
Query: 165 ANKRWVPPPGKGSLYIRPLL-VGSGPILGLAPAP-EYTFLVFASPVGNYFKE 214
NK S Y+RP++ +GS LG++ + A P G Y E
Sbjct: 112 ENKL-------ESCYLRPIIWIGSEK-LGVSAKGNTIHVAIAAWPWGAYLGE 155
>1iye_A Branched-chain amino acid aminotransferase; hexamer, PLP; HET: PGU;
1.82A {Escherichia coli} SCOP: e.17.1.1 PDB: 1i1l_A*
1i1m_A* 1iyd_A* 1i1k_A* 1a3g_A*
Length = 309
Score = 67.2 bits (165), Expect = 3e-13
Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 13/113 (11%)
Query: 106 LNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTAL 164
L+YG +FEG++ Y G +V FR ++ RL A+ P SID+ ++A +
Sbjct: 30 LHYGTSVFEGIRCYDSHKGPVV-FRHREHMQRLHDSAKIYRFPVSQSIDELMEACRDVIR 88
Query: 165 ANKRWVPPPGKGSLYIRPLL-VGSGPILGLAPAPEYT--FLVFASPVGNYFKE 214
N S YIRPL+ VG +G+ P Y+ ++ A P G Y
Sbjct: 89 KN-------NLTSAYIRPLIFVGDVG-MGVNPPAGYSTDVIIAAFPWGAYLGA 133
>3lul_A 4-amino-4-deoxychorismate lyase; structural genomi center for
structural genomics, JCSG, protein structure INI PSI-2,
pyridoxal phosphate; HET: MSE LLP; 1.78A {Legionella
pneumophila}
Length = 272
Score = 59.1 bits (144), Expect = 2e-10
Identities = 23/113 (20%), Positives = 45/113 (39%), Gaps = 18/113 (15%)
Query: 98 ELSPSSGV---LNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SID 153
+++PS G+ + G+GLFE ++ + + RL A ++ +P S D
Sbjct: 12 DMTPSFGIDDRIFLGEGLFETIRVN---SSK--PSFAYMHWERLGNSARQLGIPFEISFD 66
Query: 154 QFIDAVKQTALANKRWVPPPGKGSLYIRPLL-VGSGPILGLAPAPEYTFLVFA 205
+ + + Q + I+ +L G GLA + + L+F
Sbjct: 67 DWFEHLIQKIQKDNL-------YHGGIKAILSGGPAS-RGLAERGQVSQLIFQ 111
>3sno_A Hypothetical aminotransferase; D-aminoacid aminotransferase-like
PLP-dependent enzymes, STR genomics; HET: MSE; 1.60A
{Corynebacterium glutamicum}
Length = 315
Score = 58.1 bits (141), Expect = 4e-10
Identities = 32/160 (20%), Positives = 48/160 (30%), Gaps = 29/160 (18%)
Query: 106 LNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALA 165
L G G+FE + DG ++ R + A + +P P ++ + A +
Sbjct: 43 LTRGDGIFETLLIR---DGHA--CNVRRHGERFKASAALLGLPEPILEDWEKATQMGI-- 95
Query: 166 NKRWVPPPGKGSLYIRPLL-VGSGPILGLAPAP--------------EYTFLVFASPVGN 210
+ W P G L G GLA E+ V S G
Sbjct: 96 -ESWYSHPNAGEASCTWTLSRGRSS-TGLASGWLTITPVSSDKLAQREHGVSVMTSSRGY 153
Query: 211 YFKEGLAPLNLYVEDEFHRAT----PGGAGGVKAISNYAP 246
GL + E + P G K + YA
Sbjct: 154 SIDTGLPGIGKATRGELSKVERTPAPWLTVGAKTL-AYAA 192
>3csw_A BCAT, putative branched-chain-amino-acid aminotransfera; TM0831,
putative branched-chain amino acid aminotransferase;
HET: PLP CIT; 2.15A {Thermotoga maritima MSB8}
Length = 285
Score = 56.8 bits (138), Expect = 1e-09
Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 16/94 (17%)
Query: 106 LNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTAL 164
+ ++E ++ Y F ++ RL+ A+ +P S D+F +K A
Sbjct: 36 KSLQGAVYETLRTY---SRA--PFAAYKHYTRLKRSADFFNLPLSLSFDEFTKVLKAGAD 90
Query: 165 ANKRWVPPPGKGSLYIRPLL-VGSGPILGLAPAP 197
K+ + I+ L SG + +P
Sbjct: 91 EFKQ--------EVRIKVYLFPDSGEV-LFVFSP 115
>2xpf_A 4-amino-4-deoxychorismate lyase; para-aminobenzoic acid, folate
biosynthesis; HET: PLP PG4; 1.75A {Pseudomonas
aeruginosa} PDB: 2y4r_A* 2xpf_B*
Length = 292
Score = 56.4 bits (137), Expect = 1e-09
Identities = 22/109 (20%), Positives = 35/109 (32%), Gaps = 19/109 (17%)
Query: 106 LNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALA 165
L YG GLFE + G +++ RL+ G R+ +P + A
Sbjct: 41 LAYGDGLFETLAVR---AGT--PRLLERHLARLEEGCRRLAIP-LDTAALRQELLAFCAA 94
Query: 166 NKRWVPPPGKGSLYIRPLL-VGSGPILGLAPA--PEYTFLVFASPVGNY 211
+ ++ G G G AP ++ SP Y
Sbjct: 95 LG---------DGVAKLIVTRGEGL-RGYAPPAEASPRRILSGSPRPAY 133
>1i2k_A 4-amino-4-deoxychorismate lyase; pyridoxal phosphate, PABC; HET:
PLP; 1.79A {Escherichia coli} SCOP: e.17.1.1 PDB:
1et0_A* 1i2l_A*
Length = 269
Score = 55.2 bits (134), Expect = 3e-09
Identities = 22/144 (15%), Positives = 48/144 (33%), Gaps = 23/144 (15%)
Query: 106 LNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALA 165
+G G F + DG++ L + RLQ +R+ + Q +K A
Sbjct: 19 TQFGDGCFTTARVI---DGKVSLL--SAHIQRLQDACQRLMISCDFWPQLEQEMKTLAAE 73
Query: 166 NKRWVPPPGKGSLYIRPLLV--GSGPILGLAPAPEY--TFLVFASPVGNYFKEGLA-PLN 220
+ + ++ +++ GSG G + T ++ + ++ +
Sbjct: 74 QQ---------NGVLK-VVISRGSGG-RGYSTLNSGPATRILSVTAYPAHYDRLRNEGIT 122
Query: 221 LYVEDEFHRATPGGAGGVKAISNY 244
L + G+K + N
Sbjct: 123 LALSP-VRLGRNPHLAGIKHL-NR 144
>2zgi_A Putative 4-amino-4-deoxychorismate lyase; TTHA0621, PLP cofactor,
pyridoxal enzyme, structural NPPSFA; HET: PLP PGE; 1.93A
{Thermus thermophilus}
Length = 246
Score = 51.7 bits (125), Expect = 4e-08
Identities = 17/100 (17%), Positives = 37/100 (37%), Gaps = 15/100 (15%)
Query: 99 LSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDA 158
L+ L +G +F ++A G+ +++ RL+ A + + P + F++
Sbjct: 11 LALPEAFLYHGASVFTTLRAE---GGR--PLWLEEHLARLRRHALALGLSYPGDEAFLED 65
Query: 159 VKQTALANKRWVPPPGKGSLYIRPLL-VGSGPILGLAPAP 197
++ A + + +R VG G P
Sbjct: 66 LEALLRAFPK--------APCLRLRFTVGEGV-RLSEARP 96
>3daa_A D-amino acid aminotransferase; pyridoxal phosphate, transaminase;
HET: PDD; 1.90A {Bacillus SP} SCOP: e.17.1.1 PDB:
4daa_A* 3lqs_A* 1daa_A* 2daa_A* 5daa_A* 1g2w_A* 1a0g_A*
2dab_A*
Length = 277
Score = 47.1 bits (113), Expect = 2e-06
Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 16/112 (14%)
Query: 106 LNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTAL 164
+G G++E +K Y +G+ +F +++ RL AE++ + P + D+F + +
Sbjct: 24 YQFGDGVYEVVKVY---NGE--MFTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHELVE 78
Query: 165 ANKRWVPPPGKGSLYIRPLL-VGSGPILGLA-PAPEYTFLVFASPVGNYFKE 214
N + +I + G+ P P ++ N
Sbjct: 79 KN-------ELNTGHIYFQVTRGTSP-RAHQFPENTVKPVIIGYTKENPRPL 122
>3qqm_A MLR3007 protein; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-biology,
transferase; HET: LLP; 2.30A {Mesorhizobium loti}
Length = 221
Score = 41.5 bits (98), Expect = 1e-04
Identities = 18/92 (19%), Positives = 24/92 (26%), Gaps = 14/92 (15%)
Query: 106 LNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALA 165
L E M+ G L A RL A + Q I V AL
Sbjct: 12 DTADFELIETMRWQ---PGTSFLRFDRHLA-RLYGSAAELGFACD--PQRIAEVLSDALD 65
Query: 166 NKRWVPPPGKGSLYIRPLLVGSGPILGLAPAP 197
R ++ R L + + P
Sbjct: 66 GAR-------TAMRTR-LALARNGDATASAQP 89
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.9 bits (90), Expect = 0.002
Identities = 58/407 (14%), Positives = 97/407 (23%), Gaps = 176/407 (43%)
Query: 2 MRPATMIRNACLRNFSQSLRV--GSAF----LKSGDFCRYTSQAAASLQQDCEPSA---- 51
RP T + + + L V S F L+ F + + D EP+
Sbjct: 6 TRPLT-LSHG---SLEHVLLVPTASFFIASQLQE-QFNKILPEPTEGFAADDEPTTPAEL 60
Query: 52 ----------YSDDESADHMDWDNLGFGLTP--ADYMYTMKCSND--------------- 84
+ D L LT Y+ ND
Sbjct: 61 VGKFLGYVSSLVEPSKVGQFD-QVLNLCLTEFENCYL----EGNDIHALAAKLLQENDTT 115
Query: 85 ----------YFEKGRLSRYGKIELSPSSGVLN---------Y----GQGLFEGMKAYRK 121
Y +++ + +S + GQG + Y +
Sbjct: 116 LVKTKELIKNYITARIMAK-RPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTD---DYFE 171
Query: 122 EDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDA--------VKQTALANK------ 167
E L+ + + I ++ T A K
Sbjct: 172 E---------------LR---DLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL 213
Query: 168 ---RWVPPPGK--GSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLY 222
W+ P Y+ + + S P++G+ Y +V A G P L
Sbjct: 214 NILEWLENPSNTPDKDYLLSIPI-SCPLIGVIQLAHY--VVTAK------LLGFTPGELR 264
Query: 223 V-----------------------EDEF------------------HRATPGGAGGVKAI 241
+ F + A P + +
Sbjct: 265 SYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSIL 324
Query: 242 SNYAPVSEYF-SLML---------FAKKLNDHNTTLPA-----ISLI 273
+ +E S ML +N N+ LPA ISL+
Sbjct: 325 EDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLV 371
Score = 29.6 bits (66), Expect = 1.4
Identities = 37/212 (17%), Positives = 59/212 (27%), Gaps = 72/212 (33%)
Query: 56 ESADHMDWDNLGFGLT------PADYMYTMKCSNDYF--EKGRLSR--YGKIELSPSSGV 105
AD+ D GF + P +F EKG+ R Y +
Sbjct: 1647 NRADNHFKDTYGFSILDIVINNP-------VNLTIHFGGEKGKRIRENYSAMIFETIVDG 1699
Query: 106 LNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRL----QTGAERMCMPSPSIDQFIDAVKQ 161
+ +F+ + E FR ++ + Q P++ +
Sbjct: 1700 KLKTEKIFKEI----NEHSTSYTFRSEKGLLSATQFTQ----------PAL--TLMEKAA 1743
Query: 162 TALANKRWVPPPGKGSLYIRPLLVG-SGPILGLAPAPEYTFLVFASPVGNYFK-EGLAPL 219
+ + P G S LG EY L + + + E L +
Sbjct: 1744 FEDLKSKGLIPADA-------TFAGHS---LG-----EYAALA-S--LADVMSIESLVEV 1785
Query: 220 NLYVEDEFHR------ATPGGAGGVKAISNYA 245
V F+R A P G SNY
Sbjct: 1786 ---V---FYRGMTMQVAVPRDELG---RSNYG 1808
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.3 bits (88), Expect = 0.002
Identities = 45/316 (14%), Positives = 80/316 (25%), Gaps = 106/316 (33%)
Query: 12 CLRNFSQSLRVGSAFLKSGDFCRYTSQAAASLQQDC-EPSAYSDDESADHMDWDNLGFGL 70
L S+ + F++ Y + ++ + +PS +
Sbjct: 70 TLL--SKQEEMVQKFVEEVLRINY-KFLMSPIKTEQRQPSMMTRMYIEQR---------- 116
Query: 71 TPADYMYTMKCSNDYFEKGRLSRYGKI--------ELSPSSGVLNYGQG----------- 111
D +Y N F K +SR EL P+ VL G
Sbjct: 117 ---DRLYN---DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV 170
Query: 112 --------LFEG------MKAYRKEDG-----QLVLFRPDQNAIRLQTGAERMCMPSPSI 152
+ +K + Q +L++ D N + ++ I
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN---WTSRSDHSSNIKLRI 227
Query: 153 DQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFL--VFASPVGN 210
+++ L +K Y LLV L V + N
Sbjct: 228 HSIQAELRRL-LKSKP----------YENCLLV----------------LLNVQNAKAWN 260
Query: 211 YFKEGLAPL----NLYVEDEFHRATPGGAGGVKAISNYAPVSEYFSLMLFAKKLNDHNTT 266
F L V D + + + ++ L K L+
Sbjct: 261 AFNLSCKILLTTRFKQVTD---FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317
Query: 267 LP---------AISLI 273
LP +S+I
Sbjct: 318 LPREVLTTNPRRLSII 333
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.29
Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 20/46 (43%)
Query: 117 KAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQT 162
+A +K L L+ D +P++ A+K T
Sbjct: 20 QALKKLQASLKLYADDS---------------APAL-----AIKAT 45
Score = 26.5 bits (57), Expect = 6.4
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 10/32 (31%)
Query: 213 KEGL----APLNLYVEDEFHRATPGGAGGVKA 240
K+ L A L LY +D + P A +KA
Sbjct: 19 KQALKKLQASLKLYADD----SAP--ALAIKA 44
>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131,
NYSGXRC, structural genomics, protein structure
initiative; 2.04A {Pseudomonas syringae PV}
Length = 398
Score = 28.3 bits (63), Expect = 3.0
Identities = 14/96 (14%), Positives = 31/96 (32%), Gaps = 17/96 (17%)
Query: 87 EKGRLSRYGKIELSPSSGVLNY-----GQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTG 141
+ ++ G L P++ + + +GLFE + +A
Sbjct: 300 QPAQILERGMGYLHPNALIDDRIGGGHPEGLFEAWANLYYRFALAM------DATDRSDT 353
Query: 142 AERMCMPSPSID------QFIDAVKQTALANKRWVP 171
+ P ID ++++ +A + WV
Sbjct: 354 QALSAVRYPGIDAGVEGVRWVERCVLSADNDSIWVA 389
>3vg8_G Hypothetical protein TTHB210; alpha and beta proteins (A+B),
unknown function; 2.20A {Thermus thermophilus}
Length = 116
Score = 26.7 bits (58), Expect = 3.9
Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 5/72 (6%)
Query: 173 PGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATP 232
PG G+LY+ P + GP L A +VF P+ + L + YV+
Sbjct: 16 PGLGTLYVDPSTLPEGPFLAYDRAGNLVKVVFMVPL-----KKLNESHKYVDIGTKTLRA 70
Query: 233 GGAGGVKAISNY 244
G + ++
Sbjct: 71 LGITRIDHVNMI 82
>2cuh_A Tenascin-X; fibronectin type III domain, extracellular matrix,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 115
Score = 26.3 bits (58), Expect = 5.6
Identities = 17/80 (21%), Positives = 21/80 (26%), Gaps = 22/80 (27%)
Query: 168 RWVPPPGKGSLYI----------RPLLVGSG----PILGLAPAPEYTFLVFA-------S 206
W PP Y P+ L YT V S
Sbjct: 27 HWKPPQNPVDTYDIQVTAPGAPPLQAETPGSAVDYPLHDLVLHTNYTATVRGLRGPNLTS 86
Query: 207 PVGNYFKEGL-APLNLYVED 225
P F GL AP +L ++
Sbjct: 87 PASITFTTGLEAPRDLEAKE 106
>1xd5_A Gastrodianin-1, antifungal protein GAFP-1; monocot mannose binding
lectin, monomer, homogeneous beta- sheet; 2.00A
{Gastrodia elata} SCOP: b.78.1.1 PDB: 1xd6_A
Length = 112
Score = 25.7 bits (56), Expect = 8.8
Identities = 18/122 (14%), Positives = 34/122 (27%), Gaps = 29/122 (23%)
Query: 18 QSLRVGSAFLKSGDFCRYTSQAAASLQQDCEPSAYSDDESADHMDWDNLGFGLTPADYMY 77
L G L G + +Q DC Y ++ W + G +
Sbjct: 8 HQLDTGG-SLAEGGY-------LFIIQNDCNLVLYDNN----RAVWASGTNGKASGCVL- 54
Query: 78 TMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYR---KEDGQLVLFRPDQN 134
++ G + + S + + Y + D +V++ N
Sbjct: 55 ------------KMQNDGNLVIYSGSRAI-WASNTNRQNGNYYLILQRDRNVVIYDNSNN 101
Query: 135 AI 136
AI
Sbjct: 102 AI 103
>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell
adhesion, cleavage on PAIR of basic residues,
glycoprotein, membrane; 3.01A {Mus musculus} SCOP:
b.1.6.1 b.1.6.1 PDB: 1ncj_A
Length = 215
Score = 26.2 bits (58), Expect = 9.9
Identities = 4/30 (13%), Positives = 8/30 (26%)
Query: 197 PEYTFLVFASPVGNYFKEGLAPLNLYVEDE 226
+ A + E + + V D
Sbjct: 72 ARFHLRAHAVDINGNQVENPIDIVINVIDM 101
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.412
Gapped
Lambda K H
0.267 0.0492 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,221,075
Number of extensions: 250412
Number of successful extensions: 513
Number of sequences better than 10.0: 1
Number of HSP's gapped: 499
Number of HSP's successfully gapped: 28
Length of query: 273
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 181
Effective length of database: 4,133,061
Effective search space: 748084041
Effective search space used: 748084041
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.9 bits)