RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 024053
(273 letters)
>d2a1ha1 e.17.1.1 (A:3-365) Branched-chain aminoacid
aminotransferase {Human (Homo sapiens), mitochondrial
[TaxId: 9606]}
Length = 363
Score = 154 bits (390), Expect = 2e-45
Identities = 59/175 (33%), Positives = 96/175 (54%), Gaps = 1/175 (0%)
Query: 61 MDWDNLGFGLTPADYMYTMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYR 120
+ L FG T D+M ++ ++ + + R+ + + L P+S L+Y LFEGMKA++
Sbjct: 21 GPGEPLVFGKTFTDHMLMVEWNDKGWGQPRIQPFQNLTLHPASSSLHYSLQLFEGMKAFK 80
Query: 121 KEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYI 180
+D Q+ LFRP N R+ A R+C+PS + ++ +++ +K WVP SLY+
Sbjct: 81 GKDQQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYV 140
Query: 181 RPLLVGSGPILGLAPAPEYTFLVFASPVGNYFK-EGLAPLNLYVEDEFHRATPGG 234
RP+L+G+ P LG++ V PVG YF + P++L + F RA GG
Sbjct: 141 RPVLIGNEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGG 195
>d1iyea_ e.17.1.1 (A:) Branched-chain aminoacid aminotransferase
{Escherichia coli [TaxId: 562]}
Length = 304
Score = 81.9 bits (201), Expect = 8e-19
Identities = 35/158 (22%), Positives = 60/158 (37%), Gaps = 10/158 (6%)
Query: 89 GRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMP 148
G + R+ ++ S L+YG +FEG++ Y G V+FR ++ RL A+ P
Sbjct: 9 GEMVRWEDAKVHVMSHALHYGTSVFEGIRCYDSHKGP-VVFRHREHMQRLHDSAKIYRFP 67
Query: 149 SPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTF--LVFAS 206
+ A + + S YIRPL+ +G+ P Y+ ++ A
Sbjct: 68 VSQSIDELME------ACRDVIRKNNLTSAYIRPLIFVGDVGMGVNPPAGYSTDVIIAAF 121
Query: 207 PVGNYFKEGLAPLNL-YVEDEFHRATPGGAGGVKAISN 243
P G Y + + ++RA P
Sbjct: 122 PWGAYLGAEALEQGIDAMVSSWNRAAPNTIPTAAKAGG 159
>d1daaa_ e.17.1.1 (A:) D-aminoacid aminotransferase {Bacillus sp.,
strain YM-1 [TaxId: 1409]}
Length = 277
Score = 53.1 bits (126), Expect = 6e-09
Identities = 23/177 (12%), Positives = 54/177 (30%), Gaps = 11/177 (6%)
Query: 89 GRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMP 148
++ + ++++ +G G++E +K Y E +F +++ RL AE++ +
Sbjct: 7 DQIVKDEEVKIDKEDRGYQFGDGVYEVVKVYNGE-----MFTVNEHIDRLYASAEKIRIT 61
Query: 149 SPSIDQFI-DAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASP 207
P + + N+ G +Y + S ++ +
Sbjct: 62 IPYTKDKFHQLLHELVEKNELN-----TGHIYFQVTRGTSPRAHQFPENTVKPVIIGYTK 116
Query: 208 VGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVSEYFSLMLFAKKLNDHN 264
E L E R + + E + L+ +N
Sbjct: 117 ENPRPLENLEKGVKATFVEDIRWLRCDIKSLNLLGAVLAKQEAHEKGCYEAILHRNN 173
>d1i2ka_ e.17.1.1 (A:) Aminodeoxychorismate lyase {Escherichia coli
[TaxId: 562]}
Length = 269
Score = 50.0 bits (118), Expect = 8e-08
Identities = 19/146 (13%), Positives = 38/146 (26%), Gaps = 12/146 (8%)
Query: 99 LSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDA 158
L+ S +G G F + DG+ + + RLQ +R+ + Q
Sbjct: 12 LAVSDRATQFGDGCFTTARVI---DGK--VSLLSAHIQRLQDACQRLMISCDFWPQLEQ- 65
Query: 159 VKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAP 218
K G L + G + T ++ + ++
Sbjct: 66 ------EMKTLAAEQQNGVLKVVISRGSGGRGYSTLNSGPATRILSVTAYPAHYDRLRNE 119
Query: 219 LNLYVEDEFHRATPGGAGGVKAISNY 244
G+K ++
Sbjct: 120 GITLALSPVRLGRNPHLAGIKHLNRL 145
>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas
putida [TaxId: 303]}
Length = 345
Score = 28.3 bits (61), Expect = 1.1
Identities = 13/135 (9%), Positives = 32/135 (23%), Gaps = 4/135 (2%)
Query: 30 GDFCRYTSQAAASLQQDCEPSAYSDDESADHMDWDNLGFGLTPADYMYTMKCSNDYFEKG 89
+ + A + + + + + + +
Sbjct: 214 EAIVLFNTSLATEMSYRRKRAGHLSSKMRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQ 273
Query: 90 RLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRP-DQNAIRLQTGAERMCMP 148
L G +E+ + L M + G N +R T
Sbjct: 274 GLEGLGGVEVLGGTEANILFCRLDSAMIDALLKAGFGFYHDRWGPNVVRFVTSF---ATT 330
Query: 149 SPSIDQFIDAVKQTA 163
+ +D ++ V+ A
Sbjct: 331 AEDVDHLLNQVRLAA 345
>d2nlya1 c.6.2.7 (A:31-254) Hypothetical protein BH1492 {Bacillus
halodurans [TaxId: 86665]}
Length = 224
Score = 25.3 bits (55), Expect = 8.0
Identities = 11/68 (16%), Positives = 22/68 (32%), Gaps = 7/68 (10%)
Query: 103 SGVLNYGQGLF----EGMKAYRKEDGQLVLFRPDQNAIRLQTG---AERMCMPSPSIDQF 155
G+ N+ + M+A + + F D AE + +P + F
Sbjct: 98 VGLNNHMGSKIVENEKIMRAILEVVKEKNAFIIDSGTSPHSLIPQLAEELEVPYATRSIF 157
Query: 156 IDAVKQTA 163
+D +
Sbjct: 158 LDNTHSSR 165
>d2z06a1 d.159.1.10 (A:1-252) Hypothetical protein TTHA0625
{Thermus thermophilus [TaxId: 274]}
Length = 252
Score = 25.2 bits (55), Expect = 8.7
Identities = 5/20 (25%), Positives = 6/20 (30%)
Query: 67 GFGLTPADYMYTMKCSNDYF 86
G GL Y + D
Sbjct: 42 GKGLDRRSYRLLREAGVDLV 61
>d1t70a_ d.159.1.9 (A:) Putative phosphatase DR1281 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 255
Score = 25.2 bits (55), Expect = 8.7
Identities = 4/27 (14%), Positives = 8/27 (29%)
Query: 67 GFGLTPADYMYTMKCSNDYFEKGRLSR 93
GFG+ ++ G +
Sbjct: 42 GFGMHRDAARGALEAGAGCLTLGNHAW 68
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.412
Gapped
Lambda K H
0.267 0.0614 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,026,543
Number of extensions: 47719
Number of successful extensions: 92
Number of sequences better than 10.0: 1
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 8
Length of query: 273
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 189
Effective length of database: 1,254,276
Effective search space: 237058164
Effective search space used: 237058164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.1 bits)