BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024054
(273 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KWP|A Chain A, Crystal Structure Of Putative Methyltransferase From
Lactobacillus Brevis
Length = 296
Score = 164 bits (414), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 82/177 (46%), Positives = 114/177 (64%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQR 142
LYLV TPIGNL+D T RA++ L + ++I +EDTR++ KLL ++ I T +S+H+ N +R
Sbjct: 18 LYLVPTPIGNLDDXTFRAVKTLTAVDLIAAEDTRNTQKLLNHFEITTKQISFHEHNTQER 77
Query: 143 EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASG 202
++ +LKQG +A +SDAG P ISDPG EL C+D IPVVP+PGA+A + AL ASG
Sbjct: 78 IPQLIAKLKQGXQIAQVSDAGXPSISDPGHELVNACIDAHIPVVPLPGANAGLTALIASG 137
Query: 203 LATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSR 259
LA F F GFL + + R + A +T IFY PH+L + L+ + FG R
Sbjct: 138 LAPQPFYFYGFLDRKPKDRKAEIAGLAQRPETLIFYEAPHRLKKTLQNLAAGFGDER 194
>pdb|3HH1|A Chain A, The Structure Of A Tetrapyrrole Methylase Family Protein
Domain From Chlorobium Tepidum Tls
pdb|3HH1|B Chain B, The Structure Of A Tetrapyrrole Methylase Family Protein
Domain From Chlorobium Tepidum Tls
pdb|3HH1|C Chain C, The Structure Of A Tetrapyrrole Methylase Family Protein
Domain From Chlorobium Tepidum Tls
pdb|3HH1|D Chain D, The Structure Of A Tetrapyrrole Methylase Family Protein
Domain From Chlorobium Tepidum Tls
Length = 117
Score = 110 bits (276), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 54/110 (49%), Positives = 75/110 (68%), Gaps = 1/110 (0%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTP-LLSYHKFNESQ 141
LY+VATP+GNL+D T RA+ L++A I EDTR + LL+++ I+ L+SYH FNE +
Sbjct: 8 LYVVATPLGNLDDXTFRAVNTLRNAGAIACEDTRRTSILLKHFGIEGKRLVSYHSFNEER 67
Query: 142 REQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGA 191
+ V+ L++G VAL++DAGTP ISDPG A +PVVP+PGA
Sbjct: 68 AVRQVIELLEEGSDVALVTDAGTPAISDPGYTXASAAHAAGLPVVPVPGA 117
>pdb|1WYZ|A Chain A, X-Ray Structure Of The Putative Methyltransferase From
Bacteroides Thetaiotaomicron Vpi-5482 At The Resolution
2.5 A. Norteast Structural Genomics Consortium Target
Btr28
pdb|1WYZ|B Chain B, X-Ray Structure Of The Putative Methyltransferase From
Bacteroides Thetaiotaomicron Vpi-5482 At The Resolution
2.5 A. Norteast Structural Genomics Consortium Target
Btr28
pdb|1WYZ|C Chain C, X-Ray Structure Of The Putative Methyltransferase From
Bacteroides Thetaiotaomicron Vpi-5482 At The Resolution
2.5 A. Norteast Structural Genomics Consortium Target
Btr28
pdb|1WYZ|D Chain D, X-Ray Structure Of The Putative Methyltransferase From
Bacteroides Thetaiotaomicron Vpi-5482 At The Resolution
2.5 A. Norteast Structural Genomics Consortium Target
Btr28
Length = 242
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 89/183 (48%), Gaps = 12/183 (6%)
Query: 80 EPGLYLVATPIGN--LEDITLR-ALRVLKSANVILSEDTRHSGKLLQYYN--IKTPLLSY 134
E LYL+ +G+ LE + +++ + ED R + + L+ + I L++
Sbjct: 2 ETALYLLPVTLGDTPLEQVLPSYNTEIIRGIRHFIVEDVRSARRFLKKVDREIDIDSLTF 61
Query: 135 HKFNESQREQTV---LNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGA 191
+ N+ + + L L G +IS+AG P ++DPG ++ + +K+ V+P+ G
Sbjct: 62 YPLNKHTSPEDISGYLKPLAGGASXGVISEAGCPAVADPGADVVAIAQRQKLKVIPLVGP 121
Query: 192 SAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEV----KTQIFYVPPHKLLQF 247
S+ + ++ ASG F F G+LP R ++L V +TQ+F P++ +
Sbjct: 122 SSIILSVXASGFNGQSFAFHGYLPIEPGERAKKLKTLEQRVYAESQTQLFIETPYRNHKX 181
Query: 248 LEE 250
+E+
Sbjct: 182 IED 184
>pdb|3FQ6|A Chain A, The Crystal Structure Of A Methyltransferase Domain From
Bacteroides Thetaiotaomicron Vpi
pdb|3FQ6|B Chain B, The Crystal Structure Of A Methyltransferase Domain From
Bacteroides Thetaiotaomicron Vpi
Length = 115
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 191 ASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEE 250
A+AFV AL ASGL ++F F GFLP+ + R RL A E +T +FY PH+LL+ L +
Sbjct: 3 ATAFVPALVASGLPNEKFCFEGFLPQ-KKGRQTRLKALAEEHRTXVFYESPHRLLKTLTQ 61
Query: 251 TSLLFGYSR 259
+ FG R
Sbjct: 62 FAEYFGTER 70
>pdb|3FFY|A Chain A, Putative Tetrapyrrole (CorrinPORPHYRIN) METHYLTRANSFERASE
FROM Bacteroides Fragilis
Length = 115
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 191 ASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEE 250
A+AFV AL ASGL ++F F GFLP+ + R +L +E +T +FY PH+LL+ L +
Sbjct: 3 ATAFVPALVASGLPNEKFCFEGFLPQ-KKGRXTKLKSLVDEHRTXVFYESPHRLLKTLTQ 61
Query: 251 TSLLFGYSRYI 261
+ FG R +
Sbjct: 62 FAEYFGPERQV 72
>pdb|1VE2|A Chain A, Crystal Structure Of Uroporphyrin-Iii-C-Methyltransferase
From Thermus Thermophilus
pdb|1VE2|B Chain B, Crystal Structure Of Uroporphyrin-Iii-C-Methyltransferase
From Thermus Thermophilus
Length = 235
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 59/125 (47%), Gaps = 6/125 (4%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQR 142
+YLV G E +TL+ALRVL+ A V+L + H G L P + +
Sbjct: 5 VYLVGAGFGGPEHLTLKALRVLEVAEVVLHDRLVHPGVLALAKGELVP-VGKEGYGGKTP 63
Query: 143 EQTVLNRL----KQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAAL 198
++ + RL ++G +VA + G P + G E A IP +PG ++ V AL
Sbjct: 64 QEAITARLIALAREGRVVARLK-GGDPMVFGRGGEEALALRRAGIPFEVVPGVTSAVGAL 122
Query: 199 SASGL 203
SA GL
Sbjct: 123 SALGL 127
>pdb|1CBF|A Chain A, The X-ray Structure Of A Cobalamin Biosynthetic Enzyme,
Cobalt Precorrin-4 Methyltransferase, Cbif
Length = 285
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 56/112 (50%), Gaps = 1/112 (0%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQR 142
LY++ G+ + IT++ L++L+ A+V+L D+ S L+ +L + +
Sbjct: 23 LYIIGAGPGDPDLITVKGLKLLQQADVVLYADSLVSQDLIAKSKPGAEVLKTAGMHLEEM 82
Query: 143 EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAF 194
T+L+R+++G++V + G P + E L E + + +PG ++
Sbjct: 83 VGTMLDRMREGKMVVRVH-TGDPAMYGAIMEQMVLLKREGVDIEIVPGVTSV 133
>pdb|2CBF|A Chain A, The X-Ray Structure Of A Cobalamin Biosynthetic Enzyme,
Cobalt Precorrin-4 Methyltransferase, Cbif, From
Bacillus Megaterium, With The His-Tag Cleaved Off
Length = 234
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 56/112 (50%), Gaps = 1/112 (0%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQR 142
LY++ G+ + IT++ L++L+ A+V+L D+ S L+ +L + +
Sbjct: 6 LYIIGAGPGDPDLITVKGLKLLQQADVVLYADSLVSQDLIAKSKPGAEVLKTAGMHLEEM 65
Query: 143 EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAF 194
T+L+R+++G++V + G P + E L E + + +PG ++
Sbjct: 66 VGTMLDRMREGKMVVRVH-TGDPAMYGAIMEQMVLLKREGVDIEIVPGVTSV 116
>pdb|2ZVB|A Chain A, Crystal Structure Of Tt0207 From Thermus Thermophilus Hb8
pdb|2ZVC|A Chain A, Form 2 Structure (C2221) Of Tt0207 From Thermus
Thermophilus Hb8
Length = 295
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNI--KTPLLSYHKFNES 140
L+LV G+L +T RA L+ A V++ T KLL+ + ++ E
Sbjct: 4 LFLVGMGPGDLPGLTQRAREALEGAEVVIGYSTYV--KLLEEMGLLAGKEVVRKGMTEEL 61
Query: 141 QREQTVLNRLKQGEIVALISDAGTPGI 167
R + L R G+ VAL+S G PGI
Sbjct: 62 DRAEEALERALSGQRVALVS-GGDPGI 87
>pdb|1WDE|A Chain A, Crystal Structure Of The Conserved Hypothetical Protein
Ape0931 From Aeropyrum Pernix K1
Length = 294
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 60/131 (45%), Gaps = 7/131 (5%)
Query: 97 TLRALRVLKSANVILSEDTRHSGKLLQYYNI-----KTPLLSYHKFNESQREQTVLNRLK 151
TL AL ++ A+V+ E G Y ++ + ++ + + +R + +++R
Sbjct: 23 TLEALDAVRRADVVYVESYTXPGSSWLYKSVVEAAGEARVVEASRRDLEERSREIVSRAL 82
Query: 152 QGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFV 211
+VA+++ AG P ++ + LA ++ + V IPG S AA A+ L+ F
Sbjct: 83 DA-VVAVVT-AGDPXVATTHSSLAAEALEAGVAVRYIPGVSGVQAARGATXLSFYRFGGT 140
Query: 212 GFLPKHARSRT 222
LP R T
Sbjct: 141 VTLPGPWRGVT 151
>pdb|1JSC|A Chain A, Crystal Structure Of The Catalytic Subunit Of Yeast
Acetohydroxyacid Synthase: A Target For Herbicidal
Inhibitors
pdb|1JSC|B Chain B, Crystal Structure Of The Catalytic Subunit Of Yeast
Acetohydroxyacid Synthase: A Target For Herbicidal
Inhibitors
Length = 630
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 12/57 (21%)
Query: 167 ISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARSRTE 223
+S G L ++ VD+K+PV+P + A G DE F+ F P+ R +TE
Sbjct: 576 VSTKGPVLLEVEVDKKVPVLP----------MVAGGSGLDE--FINFDPEVERQQTE 620
>pdb|1N0H|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Chlorimuron Ethyl
pdb|1N0H|B Chain B, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Chlorimuron Ethyl
pdb|1T9A|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Tribenuron Methyl
pdb|1T9A|B Chain B, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Tribenuron Methyl
pdb|1T9B|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Chlorsulfuron
pdb|1T9B|B Chain B, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Chlorsulfuron
pdb|1T9C|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Sulfometuron
Methyl
pdb|1T9C|B Chain B, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Sulfometuron
Methyl
pdb|1T9D|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Metsulfuron
Methyl
pdb|1T9D|B Chain B, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Metsulfuron
Methyl
pdb|1T9D|C Chain C, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Metsulfuron
Methyl
pdb|1T9D|D Chain D, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Metsulfuron
Methyl
Length = 677
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 12/57 (21%)
Query: 167 ISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARSRTE 223
+S G L ++ VD+K+PV+P + A G DE F+ F P+ R +TE
Sbjct: 623 VSTKGPVLLEVEVDKKVPVLP----------MVAGGSGLDE--FINFDPEVERQQTE 667
>pdb|1S4D|A Chain A, Crystal Structure Analysis Of The S-adenosyl-l-methionine
Dependent Uroporphyrinogen-iii C-methyltransferase Sumt
pdb|1S4D|B Chain B, Crystal Structure Analysis Of The S-adenosyl-l-methionine
Dependent Uroporphyrinogen-iii C-methyltransferase Sumt
pdb|1S4D|D Chain D, Crystal Structure Analysis Of The S-adenosyl-l-methionine
Dependent Uroporphyrinogen-iii C-methyltransferase Sumt
pdb|1S4D|E Chain E, Crystal Structure Analysis Of The S-adenosyl-l-methionine
Dependent Uroporphyrinogen-iii C-methyltransferase Sumt
pdb|1S4D|F Chain F, Crystal Structure Analysis Of The S-adenosyl-l-methionine
Dependent Uroporphyrinogen-iii C-methyltransferase Sumt
pdb|1S4D|G Chain G, Crystal Structure Analysis Of The S-adenosyl-l-methionine
Dependent Uroporphyrinogen-iii C-methyltransferase Sumt
pdb|1S4D|H Chain H, Crystal Structure Analysis Of The S-adenosyl-l-methionine
Dependent Uroporphyrinogen-iii C-methyltransferase Sumt
pdb|1S4D|I Chain I, Crystal Structure Analysis Of The S-adenosyl-l-methionine
Dependent Uroporphyrinogen-iii C-methyltransferase Sumt
pdb|1S4D|J Chain J, Crystal Structure Analysis Of The S-adenosyl-l-methionine
Dependent Uroporphyrinogen-iii C-methyltransferase Sumt
pdb|1S4D|K Chain K, Crystal Structure Analysis Of The S-adenosyl-l-methionine
Dependent Uroporphyrinogen-iii C-methyltransferase Sumt
pdb|1S4D|L Chain L, Crystal Structure Analysis Of The S-adenosyl-l-methionine
Dependent Uroporphyrinogen-iii C-methyltransferase Sumt
pdb|1S4D|M Chain M, Crystal Structure Analysis Of The S-adenosyl-l-methionine
Dependent Uroporphyrinogen-iii C-methyltransferase Sumt
Length = 280
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 62/135 (45%), Gaps = 15/135 (11%)
Query: 79 LEPG-LYLVATPIGNLEDITLRALRVLKSANVIL-----SEDT---RHSGKLLQYYNIKT 129
LE G ++LV G+ +TL A L+ A+VI+ +ED G +L++ +
Sbjct: 12 LEKGSVWLVGAGPGDPGLLTLHAANALRQADVIVHDALVNEDCLKLARPGAVLEFAGKRG 71
Query: 130 PLLSYHKFNESQREQTV-LNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPI 188
K + QR+ ++ L L + L G P + G E A V+ ++P +
Sbjct: 72 -----GKPSPKQRDISLRLVELARAGNRVLRLKGGDPFVFGRGGEEALTLVEHQVPFRIV 126
Query: 189 PGASAFVAALSASGL 203
PG +A + L+ +G+
Sbjct: 127 PGITAGIGGLAYAGI 141
>pdb|3PJR|A Chain A, Helicase Substrate Complex
pdb|1QHG|A Chain A, Structure Of Dna Helicase Mutant With Adpnp
pdb|1PJR|A Chain A, Structure Of Dna Helicase
Length = 724
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 102 RVLKSANVILSEDTRHSGKLLQYYNIK-TPLLSYHKFNESQREQTVLNRLKQG 153
R+L++AN ++ + K + N + P+L Y NE+ Q V R+++
Sbjct: 291 RILQAANEVIEHNVNRKPKRIWTENPEGKPILYYEAMNEADEAQFVAGRIREA 343
>pdb|1V9A|A Chain A, Crystal Structure Of Uroporphyrin-Iii C-Methyl Transferase
From Thermus Thermophilus Complexed With S-Adenyl
Homocysteine
pdb|1V9A|B Chain B, Crystal Structure Of Uroporphyrin-Iii C-Methyl Transferase
From Thermus Thermophilus Complexed With S-Adenyl
Homocysteine
pdb|1VA0|A Chain A, Crystal Structure Of The Native Form Of Uroporphyrin Iii
C-Methyl Transferase From Thermus Thermophilus
pdb|1VA0|B Chain B, Crystal Structure Of The Native Form Of Uroporphyrin Iii
C-Methyl Transferase From Thermus Thermophilus
Length = 239
Score = 27.3 bits (59), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSE 113
+YLV G+ E +TL+A R+LK A V+L +
Sbjct: 3 VYLVGAGPGDPELLTLKAYRLLKEAPVVLYD 33
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,919,461
Number of Sequences: 62578
Number of extensions: 247559
Number of successful extensions: 853
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 831
Number of HSP's gapped (non-prelim): 28
length of query: 273
length of database: 14,973,337
effective HSP length: 97
effective length of query: 176
effective length of database: 8,903,271
effective search space: 1566975696
effective search space used: 1566975696
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)