BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024054
(273 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P74038|RSMI_SYNY3 Ribosomal RNA small subunit methyltransferase I OS=Synechocystis
sp. (strain PCC 6803 / Kazusa) GN=rsmI PE=3 SV=1
Length = 279
Score = 189 bits (481), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 93/177 (52%), Positives = 119/177 (67%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQR 142
LYLVATPIGNL D+T RA+ L++ ++I +EDTRH+GKLLQ++ I TP +SYH N R
Sbjct: 4 LYLVATPIGNLGDMTPRAVETLQTVDLIAAEDTRHTGKLLQHFQITTPQISYHDHNRHGR 63
Query: 143 EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASG 202
Q +L +L+ G+ +AL+SDAGTPGISDPG EL C + I V+PIPGA+A +AAL +SG
Sbjct: 64 TQELLAKLQAGQNIALVSDAGTPGISDPGQELVAACGEANIEVIPIPGATALIAALISSG 123
Query: 203 LATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSR 259
LATD F F GFL R R + L A E +T I Y PH+LL L + G R
Sbjct: 124 LATDRFVFEGFLSTKNRPRQQLLQSLAQEERTIILYEAPHRLLATLTDLQTFLGQER 180
>sp|P45298|RSMI_HAEIN Ribosomal RNA small subunit methyltransferase I OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=rsmI PE=3 SV=1
Length = 283
Score = 187 bits (475), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 90/179 (50%), Positives = 119/179 (66%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQR 142
LY+VATPIGNL+DIT RAL ++I +EDTRHSG LL +Y IK P + H NE ++
Sbjct: 8 LYIVATPIGNLQDITQRALETFAQVDLIAAEDTRHSGLLLSHYGIKKPFFALHDHNEQEK 67
Query: 143 EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASG 202
++ +LKQG +ALISDAGTP ISDPG L + C + I VVP+PGA A + AL ASG
Sbjct: 68 AHILVEKLKQGSNIALISDAGTPLISDPGFHLVRQCREAGIRVVPLPGACAAITALCASG 127
Query: 203 LATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRYI 261
+A+D F F GFLP +++R ++L A E +T IFY H++L LE+ + G RYI
Sbjct: 128 IASDRFCFEGFLPAKSKARKDKLENIAEEDRTLIFYESTHRILDTLEDMQAVLGEERYI 186
>sp|Q9CN04|RSMI_PASMU Ribosomal RNA small subunit methyltransferase I OS=Pasteurella
multocida (strain Pm70) GN=rsmI PE=3 SV=1
Length = 281
Score = 187 bits (474), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 90/179 (50%), Positives = 119/179 (66%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQR 142
LY+VATPIGNL+DIT RAL + + ++I +EDTRHSG LL +Y IK P + H NE Q+
Sbjct: 8 LYIVATPIGNLQDITQRALAIFEQVDLIAAEDTRHSGLLLSHYGIKKPFFALHDHNEQQK 67
Query: 143 EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASG 202
++ +L+QG+ +ALISDAGTP ISDPG L + C I VVPIPGA A V AL ASG
Sbjct: 68 AHLLVEKLQQGQHIALISDAGTPLISDPGFHLVRQCRQAGIKVVPIPGACAAVTALCASG 127
Query: 203 LATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRYI 261
+A+D F F GFLP +++R ++L A E +T IFY H++L L + G RY+
Sbjct: 128 IASDRFCFEGFLPAKSKARCDKLQNLAEEERTLIFYESTHRILDTLADIEKTLGAERYV 186
>sp|Q9HVZ3|RSMI_PSEAE Ribosomal RNA small subunit methyltransferase I OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=rsmI PE=3 SV=1
Length = 282
Score = 178 bits (452), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 90/177 (50%), Positives = 119/177 (67%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQR 142
L++VATPIGNL+DI+ RALRVL+ ++ +EDTRHS +L Q++ I+TPL + H+ NE +
Sbjct: 6 LFVVATPIGNLDDISPRALRVLREVALVAAEDTRHSIRLFQHFGIETPLAACHEHNEREE 65
Query: 143 EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASG 202
++RL+ GE VALISDAGTP ISDPG L + I VVP+PG+ A +AALSA+G
Sbjct: 66 GGRFISRLQGGEDVALISDAGTPLISDPGFHLVRQAQALGIRVVPVPGSCALIAALSAAG 125
Query: 203 LATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSR 259
L +D F F GFLP A R RL E +T IFY PH+LL+ L + +FG R
Sbjct: 126 LPSDRFIFEGFLPAKAAGRRSRLQAVQEEPRTLIFYEAPHRLLESLADMRDVFGGER 182
>sp|P67087|RSMI_ECOLI Ribosomal RNA small subunit methyltransferase I OS=Escherichia coli
(strain K12) GN=rsmI PE=1 SV=1
Length = 286
Score = 177 bits (450), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 86/179 (48%), Positives = 121/179 (67%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQR 142
LY+V TPIGNL DIT RAL VL++ ++I +EDTRH+G LLQ++ I L + H NE Q+
Sbjct: 14 LYIVPTPIGNLADITQRALEVLQAVDLIAAEDTRHTGLLLQHFGINARLFALHDHNEQQK 73
Query: 143 EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASG 202
+T+L +L++G+ +AL+SDAGTP I+DPG L + C + I VVP+PG A + ALSA+G
Sbjct: 74 AETLLAKLQEGQNIALVSDAGTPLINDPGYHLVRTCREAGIRVVPLPGPCAAITALSAAG 133
Query: 203 LATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRYI 261
L +D F + GFLP ++ R + L E +T IFY H+LL LE+ + G SRY+
Sbjct: 134 LPSDRFCYEGFLPAKSKGRRDALKAIEAEPRTLIFYESTHRLLDSLEDIVAVLGESRYV 192
>sp|P67088|RSMI_ECO57 Ribosomal RNA small subunit methyltransferase I OS=Escherichia coli
O157:H7 GN=rsmI PE=3 SV=1
Length = 286
Score = 177 bits (450), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 86/179 (48%), Positives = 121/179 (67%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQR 142
LY+V TPIGNL DIT RAL VL++ ++I +EDTRH+G LLQ++ I L + H NE Q+
Sbjct: 14 LYIVPTPIGNLADITQRALEVLQAVDLIAAEDTRHTGLLLQHFGINARLFALHDHNEQQK 73
Query: 143 EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASG 202
+T+L +L++G+ +AL+SDAGTP I+DPG L + C + I VVP+PG A + ALSA+G
Sbjct: 74 AETLLAKLQEGQNIALVSDAGTPLINDPGYHLVRTCREAGIRVVPLPGPCAAITALSAAG 133
Query: 203 LATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRYI 261
L +D F + GFLP ++ R + L E +T IFY H+LL LE+ + G SRY+
Sbjct: 134 LPSDRFCYEGFLPAKSKGRRDALKAIEAEPRTLIFYESTHRLLDSLEDIVAVLGESRYV 192
>sp|Q9KGL2|RSMI_BACHD Ribosomal RNA small subunit methyltransferase I OS=Bacillus
halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344
/ JCM 9153 / C-125) GN=rsmI PE=3 SV=1
Length = 289
Score = 175 bits (443), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 89/191 (46%), Positives = 127/191 (66%), Gaps = 1/191 (0%)
Query: 71 EQSSKRGPLEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTP 130
+QS ++ + LYLVATPIGNLED+T RA+R LK A+ I +EDTR + KLL +++I T
Sbjct: 4 QQSYQQRDDKGTLYLVATPIGNLEDVTFRAIRTLKEADQIAAEDTRQTKKLLNHFDIATK 63
Query: 131 LLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPG 190
L+SYH+ N+ + +++ L +G +AL+SDAG P ISDPG EL + E I V+PIPG
Sbjct: 64 LVSYHEHNKETMGKRLIDDLIEGRTIALVSDAGMPAISDPGYELVVSAIKEGIAVIPIPG 123
Query: 191 ASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEE 250
A+A V AL ASGL T+ F F+GFLP+ + R + L + T IFY PH+L L++
Sbjct: 124 ANAAVTALIASGLPTESFQFIGFLPRQKKQRRQALEETKPTKATLIFYESPHRLKDTLDD 183
Query: 251 TSLLFGYSRYI 261
L+ G +R++
Sbjct: 184 MLLILG-NRHV 193
>sp|Q9KUD9|RSMI_VIBCH Ribosomal RNA small subunit methyltransferase I OS=Vibrio cholerae
serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
GN=rsmI PE=3 SV=1
Length = 288
Score = 175 bits (443), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 86/181 (47%), Positives = 119/181 (65%)
Query: 81 PGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNES 140
P LY+V TPIGNL DIT RAL VL S ++I EDTRH+GKLL ++NI T + H NE
Sbjct: 12 PILYIVPTPIGNLGDITQRALDVLASVDMIAVEDTRHTGKLLAHFNISTKTFALHDHNEQ 71
Query: 141 QREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSA 200
Q+ Q ++++L G +AL+SDAGTP ISDPG L C + VVP+PG A + ALSA
Sbjct: 72 QKAQVLVDKLLSGLSIALVSDAGTPLISDPGYHLVTQCRQAGVKVVPLPGPCAVITALSA 131
Query: 201 SGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRY 260
SGL +D F+F GFLP +++R ++L+ A +T IFY PH++ + L++ + G R
Sbjct: 132 SGLPSDSFSFEGFLPAKSKARKDKLLEIAKVSRTCIFYESPHRICESLQDMLDVLGGERE 191
Query: 261 I 261
+
Sbjct: 192 V 192
>sp|Q8KA29|RSMI_BUCAP Ribosomal RNA small subunit methyltransferase I OS=Buchnera
aphidicola subsp. Schizaphis graminum (strain Sg)
GN=rsmI PE=3 SV=1
Length = 285
Score = 163 bits (413), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 79/179 (44%), Positives = 118/179 (65%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQR 142
LY+V TPIGNL DIT RA+ LK+ N+I +E+ H+ LLQ+YN+K L+S +K NE ++
Sbjct: 10 LYIVPTPIGNLSDITYRAVETLKNVNLIAAENIHHTNILLQHYNVKNILISLNKNNEKKQ 69
Query: 143 EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASG 202
V+N LK+G+ +AL+SDAGTP I+DPG L K C I ++P+PG A + ALSASG
Sbjct: 70 SDYVINELKKGKKIALVSDAGTPVINDPGYFLVKKCCFLNIKIIPLPGPCAAITALSASG 129
Query: 203 LATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRYI 261
++T+ F + GFLP + R + L E++T IFY H++L+ +++ +RY+
Sbjct: 130 ISTNRFCYEGFLPSKKKIRRDLLKSLKKEIRTIIFYESKHRILESIKDIIETIDENRYL 188
>sp|Q87B70|RSMI_XYLFT Ribosomal RNA small subunit methyltransferase I OS=Xylella
fastidiosa (strain Temecula1 / ATCC 700964) GN=rsmI PE=3
SV=1
Length = 273
Score = 162 bits (409), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 83/180 (46%), Positives = 118/180 (65%), Gaps = 1/180 (0%)
Query: 81 PG-LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNE 139
PG L++VATPIGNL D++ RA +L++ +I +EDTRH+ +LL ++ I+ PLL+ H NE
Sbjct: 4 PGTLHIVATPIGNLGDLSPRAQHILRTVTMICAEDTRHTRQLLAHFGIERPLLALHAHNE 63
Query: 140 SQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALS 199
+ ++ RL GE +AL+SDAGTP ISDPG L + I V P+PG SA +AALS
Sbjct: 64 DTLAERIITRLISGESLALVSDAGTPLISDPGFLLVRAARAAGIRVTPVPGPSALIAALS 123
Query: 200 ASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSR 259
SGL ++ FTF GFLP +R +RL A+E +T IFY H++ + L + + +FG R
Sbjct: 124 VSGLPSNRFTFEGFLPAKPTARRDRLTHLAHEPRTLIFYEASHRIAECLTDLATIFGSMR 183
>sp|P57192|RSMI_BUCAI Ribosomal RNA small subunit methyltransferase I OS=Buchnera
aphidicola subsp. Acyrthosiphon pisum (strain APS)
GN=rsmI PE=3 SV=1
Length = 282
Score = 159 bits (403), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 79/179 (44%), Positives = 116/179 (64%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQR 142
LY+V TPIGNL DIT RAL VLK ++I +E+ RH+ LLQ++NIK L+ +K NE ++
Sbjct: 9 LYIVPTPIGNLSDITYRALEVLKDVDIIAAENIRHTNILLQHFNIKNNLILMNKDNEKKQ 68
Query: 143 EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASG 202
++ LK+G+ +AL+S+AGTP I+DPG L K C I V+P+PGA A + ALSASG
Sbjct: 69 SHNLIQELKKGKKIALVSNAGTPIINDPGCILIKQCHIFDIKVIPLPGACAAITALSASG 128
Query: 203 LATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRYI 261
+ + F + GFLP +SR + L E +T IFY H++L+ +++ +R+I
Sbjct: 129 IINNRFCYEGFLPSRKKSRCDLLHSLKEETRTIIFYESKHRILESIKDIIEQIDKNRHI 187
>sp|Q9PFV5|RSMI_XYLFA Ribosomal RNA small subunit methyltransferase I OS=Xylella
fastidiosa (strain 9a5c) GN=rsmI PE=3 SV=1
Length = 273
Score = 159 bits (402), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 82/180 (45%), Positives = 117/180 (65%), Gaps = 1/180 (0%)
Query: 81 PG-LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNE 139
PG L++VATPIGNL D++ RA +L++ +I +EDTRH+ +LL ++ I+ PLL+ H NE
Sbjct: 4 PGTLHIVATPIGNLGDLSPRAQHILRTVTMICAEDTRHTRQLLAHFGIERPLLALHAHNE 63
Query: 140 SQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALS 199
+ ++ RL G +AL+SDAGTP ISDPG L + I V P+PG SA +AALS
Sbjct: 64 DTLAERIITRLISGASLALVSDAGTPLISDPGFLLVRAARAAGIRVTPVPGPSALIAALS 123
Query: 200 ASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSR 259
SGL ++ FTF GFLP +R +RL A+E +T IFY H++ + L + + +FG R
Sbjct: 124 VSGLPSNRFTFEGFLPAKPTARRDRLTHLAHEPRTLIFYEASHRIAECLTDLATIFGSMR 183
>sp|Q98DM9|RSMI_RHILO Ribosomal RNA small subunit methyltransferase I OS=Rhizobium loti
(strain MAFF303099) GN=rsmI PE=3 SV=1
Length = 294
Score = 155 bits (393), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 88/182 (48%), Positives = 108/182 (59%)
Query: 78 PLEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKF 137
PLEP LYLVATPIGNL DITLRAL L +A+++ EDTR S LL Y I+ +YH+
Sbjct: 11 PLEPALYLVATPIGNLADITLRALETLAAADIVACEDTRVSRVLLDRYGIRRRTTAYHEH 70
Query: 138 NESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAA 197
N + ++ L+ G+ VALISDAGTP +SDPG L +D I VVPIPG SA +AA
Sbjct: 71 NAGEAGPKLIAALQGGQSVALISDAGTPLVSDPGYRLVGEAIDHGIRVVPIPGPSAPLAA 130
Query: 198 LSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGY 257
L+ASGL +D F F GFLP R RL T IF+ P +L + L G
Sbjct: 131 LTASGLPSDAFLFAGFLPVKVGQRLTRLEALKAVPATLIFFESPRRLAESLGAMVEALGG 190
Query: 258 SR 259
R
Sbjct: 191 ER 192
>sp|Q08329|RSMI_MICOL Ribosomal RNA small subunit methyltransferase I (Fragment)
OS=Micromonospora olivasterospora GN=rsmI PE=3 SV=1
Length = 313
Score = 152 bits (384), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 78/174 (44%), Positives = 108/174 (62%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQR 142
LYLV TPIGN DITLRA+ VL+ V+ SEDTRH+ +L Q I L+SYH NE R
Sbjct: 33 LYLVPTPIGNPGDITLRAIEVLRRVGVVASEDTRHTYRLFQSLEIDARLVSYHDHNEESR 92
Query: 143 EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASG 202
+ +L L++G VAL+SDAGTP ++DPG L V+ +PV P+PGA+A V AL SG
Sbjct: 93 SRQLLGLLREGTDVALVSDAGTPLVNDPGYRLVAAAVEADVPVRPLPGATASVTALIGSG 152
Query: 203 LATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFG 256
+ +F +VGFLP+ +R L + T IF+ PH+++ L + + + G
Sbjct: 153 MPNHQFHYVGFLPRKEAARRAALTALRSTPATLIFFEAPHRIVAMLADLAAVLG 206
>sp|P37544|RSMI_BACSU Ribosomal RNA small subunit methyltransferase I OS=Bacillus
subtilis (strain 168) GN=rsmI PE=3 SV=1
Length = 292
Score = 149 bits (375), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 83/190 (43%), Positives = 114/190 (60%), Gaps = 1/190 (0%)
Query: 68 LILEQSSKRGPLEPG-LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYN 126
++ Q S G + G LYLV TPIGNLED+T RA+ LKS + I +EDTR + KL Y
Sbjct: 1 MLRRQMSFNGKSDMGILYLVPTPIGNLEDMTFRAIDTLKSVDAIAAEDTRQTKKLCHVYE 60
Query: 127 IKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVV 186
I+TPL+SYH+ N+ ++ LK G+ +AL+SDAG P ISDPG E+ K D VV
Sbjct: 61 IETPLVSYHEHNKESSGHKIIEWLKSGKNIALVSDAGLPTISDPGAEIVKDFTDIGGYVV 120
Query: 187 PIPGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQ 246
P+PGA+A + AL ASG+ F F GFL + + + + L +T IFY PH+L +
Sbjct: 121 PLPGANAALTALIASGIVPQPFFFYGFLNRQKKEKKKELEALKKRQETIIFYEAPHRLKE 180
Query: 247 FLEETSLLFG 256
L + + G
Sbjct: 181 TLSAMAEILG 190
>sp|Q9WZG8|RSMI_THEMA Ribosomal RNA small subunit methyltransferase I OS=Thermotoga
maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM
10099) GN=rsmI PE=3 SV=1
Length = 222
Score = 143 bits (361), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 78/175 (44%), Positives = 110/175 (62%), Gaps = 3/175 (1%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQR 142
L +V TPIGNLEDIT+RAL+ L+ ++IL+EDTR + LL Y IK PLLS+++ N +R
Sbjct: 4 LIIVGTPIGNLEDITIRALKTLREVDLILAEDTRRTMVLLNKYRIKKPLLSFNERNSKKR 63
Query: 143 EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASG 202
+ +L LK+G+ VA++SDAG P ISDPG L + C E I V +PG SA +A++ SG
Sbjct: 64 IKEILPLLKEGKKVAIVSDAGMPVISDPGYNLVEECWREGIEVDIVPGPSALTSAVAVSG 123
Query: 203 LATDEFTFVGFLPKHARSRTERLMLS-ANEVKTQIFYVPPHKLLQFLEETSLLFG 256
+F F GFLP+ R RL+ S E + +F+ P +LL L + + G
Sbjct: 124 FPGSKFIFEGFLPRGKNRR--RLLKSLKKENRVIVFFESPERLLSTLRDILEIIG 176
>sp|Q2NAK3|RSMI_ERYLH Ribosomal RNA small subunit methyltransferase I OS=Erythrobacter
litoralis (strain HTCC2594) GN=rsmI PE=3 SV=2
Length = 281
Score = 142 bits (359), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 77/171 (45%), Positives = 106/171 (61%), Gaps = 1/171 (0%)
Query: 78 PLEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKF 137
PL PGLY+VATPIGNL DITLRA+ L+ + + EDTR +GKLL++ I L Y
Sbjct: 9 PLSPGLYIVATPIGNLGDITLRAIETLRRCDAVACEDTRMTGKLLKHLGISKSLWRYDDH 68
Query: 138 NESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAA 197
++++ + ++ + + + VAL+SDAGTP ISDPG L + D +PV IPGA A +A
Sbjct: 69 SDAKAREKIVAAISE-KAVALVSDAGTPLISDPGYRLVRDARDASLPVTTIPGACAAIAG 127
Query: 198 LSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFL 248
L+ SGL +D F F GFLP ++R E L A + IFY +LL+ L
Sbjct: 128 LTLSGLPSDRFLFAGFLPVKDKARREMLEKLAPVDASLIFYETGPRLLKSL 178
>sp|Q9JWJ7|RSMI_NEIMA Ribosomal RNA small subunit methyltransferase I OS=Neisseria
meningitidis serogroup A / serotype 4A (strain Z2491)
GN=rsmI PE=3 SV=1
Length = 291
Score = 142 bits (359), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 77/176 (43%), Positives = 109/176 (61%), Gaps = 6/176 (3%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQR 142
LY+VATPIGNL DITLRAL VL+ A++I +EDTR + +LL Y I+ L+S + NE Q
Sbjct: 18 LYVVATPIGNLADITLRALAVLQKADIICAEDTRVTAQLLSAYGIQGKLVSVREHNERQM 77
Query: 143 EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASG 202
++ L G +VA +SDAGTP + DPG +LA+ + VVP+ GASA +AALS +G
Sbjct: 78 ADKIVGYLSDGMVVAQVSDAGTPAVCDPGAKLARRVREVGFKVVPVVGASAVMAALSVAG 137
Query: 203 LATDEFTFVGFLPKHARSRTERLMLSANEVKTQ---IFYVPPHKLLQFLEETSLLF 255
+A +F F GF+P + ER L A V+ + + PH++ L + + LF
Sbjct: 138 VAGSDFYFNGFVPPKS---GERRKLFAKWVRVAFPVVMFETPHRIGATLADMAELF 190
>sp|Q9A186|RSMI_STRP1 Ribosomal RNA small subunit methyltransferase I OS=Streptococcus
pyogenes serotype M1 GN=rsmI PE=3 SV=1
Length = 287
Score = 141 bits (356), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 77/201 (38%), Positives = 118/201 (58%)
Query: 70 LEQSSKRGPLEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKT 129
+++S K LYLV TPIGNL+D+T RA+ LK + I +EDTR++G LL++++I T
Sbjct: 3 VQKSFKDKKTSGTLYLVPTPIGNLQDMTFRAVATLKEVDFICAEDTRNTGLLLKHFDIAT 62
Query: 130 PLLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIP 189
+S+H+ N ++ +++ L G +A +SDAG P ISDPG +L K +D I VV +P
Sbjct: 63 KQISFHEHNAYEKIPDLIDLLISGRSLAQVSDAGMPSISDPGHDLVKAAIDSDIAVVALP 122
Query: 190 GASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLE 249
GASA + AL ASGLA F GFLP+ A + + +TQ+FY P+++ L
Sbjct: 123 GASAGITALIASGLAPQPHVFYGFLPRKAGQQKAFFEDKHHYPETQMFYESPYRIKDTLT 182
Query: 250 ETSLLFGYSRYIRYLKILFLF 270
+G + + ++ LF
Sbjct: 183 NMLACYGDRQVVLVRELTKLF 203
>sp|P0DF47|RSMI_STRPQ Ribosomal RNA small subunit methyltransferase I OS=Streptococcus
pyogenes serotype M3 (strain SSI-1) GN=rsmI PE=3 SV=1
Length = 287
Score = 141 bits (356), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 77/201 (38%), Positives = 118/201 (58%)
Query: 70 LEQSSKRGPLEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKT 129
+++S K LYLV TPIGNL+D+T RA+ LK + I +EDTR++G LL++++I T
Sbjct: 3 VQKSFKDKKTSGTLYLVPTPIGNLQDMTFRAVATLKEVDFICAEDTRNTGLLLKHFDIAT 62
Query: 130 PLLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIP 189
+S+H+ N ++ +++ L G +A +SDAG P ISDPG +L K +D I VV +P
Sbjct: 63 KQISFHEHNAYEKIPDLIDLLISGRSLAQVSDAGMPSISDPGHDLVKAAIDSDITVVALP 122
Query: 190 GASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLE 249
GASA + AL ASGLA F GFLP+ A + + +TQ+FY P+++ L
Sbjct: 123 GASAGITALIASGLAPQPHVFYGFLPRKAGQQKAFFEDKHHYPETQMFYESPYRIKDTLT 182
Query: 250 ETSLLFGYSRYIRYLKILFLF 270
+G + + ++ LF
Sbjct: 183 NMLACYGDRQVVLVRELTKLF 203
>sp|P0DF46|RSMI_STRP3 Ribosomal RNA small subunit methyltransferase I OS=Streptococcus
pyogenes serotype M3 (strain ATCC BAA-595 / MGAS315)
GN=rsmI PE=3 SV=1
Length = 287
Score = 141 bits (356), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 77/201 (38%), Positives = 118/201 (58%)
Query: 70 LEQSSKRGPLEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKT 129
+++S K LYLV TPIGNL+D+T RA+ LK + I +EDTR++G LL++++I T
Sbjct: 3 VQKSFKDKKTSGTLYLVPTPIGNLQDMTFRAVATLKEVDFICAEDTRNTGLLLKHFDIAT 62
Query: 130 PLLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIP 189
+S+H+ N ++ +++ L G +A +SDAG P ISDPG +L K +D I VV +P
Sbjct: 63 KQISFHEHNAYEKIPDLIDLLISGRSLAQVSDAGMPSISDPGHDLVKAAIDSDITVVALP 122
Query: 190 GASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLE 249
GASA + AL ASGLA F GFLP+ A + + +TQ+FY P+++ L
Sbjct: 123 GASAGITALIASGLAPQPHVFYGFLPRKAGQQKAFFEDKHHYPETQMFYESPYRIKDTLT 182
Query: 250 ETSLLFGYSRYIRYLKILFLF 270
+G + + ++ LF
Sbjct: 183 NMLACYGDRQVVLVRELTKLF 203
>sp|Q9JXE3|RSMI_NEIMB Ribosomal RNA small subunit methyltransferase I OS=Neisseria
meningitidis serogroup B (strain MC58) GN=rsmI PE=3 SV=1
Length = 291
Score = 141 bits (355), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 76/176 (43%), Positives = 108/176 (61%), Gaps = 6/176 (3%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQR 142
LY+VATPIGNL DITLRAL VL+ A++I +EDTR + +LL Y I+ L+S + NE Q
Sbjct: 18 LYVVATPIGNLADITLRALAVLQKADIICAEDTRVTAQLLSAYGIQGKLVSVREHNERQM 77
Query: 143 EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASG 202
++ L G +VA +SDAGTP + DPG +LA+ + VVP+ GASA +AALS +G
Sbjct: 78 ADKIVGYLSDGMVVAQVSDAGTPAVCDPGAKLARRVREAGFKVVPVVGASAVMAALSVAG 137
Query: 203 LATDEFTFVGFLPKHARSRTERLMLSANEVKTQ---IFYVPPHKLLQFLEETSLLF 255
+ +F F GF+P + ER L A V+ + + PH++ L + + LF
Sbjct: 138 VEGSDFYFNGFVPPKS---GERRKLFAKWVRAAFPIVMFETPHRIGATLADMAELF 190
>sp|B4U6H0|RSMI_HYDS0 Ribosomal RNA small subunit methyltransferase I OS=Hydrogenobaculum
sp. (strain Y04AAS1) GN=rsmI PE=3 SV=1
Length = 230
Score = 140 bits (354), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 75/168 (44%), Positives = 108/168 (64%), Gaps = 2/168 (1%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIK-TPLLSYHKFNESQ 141
LY+V TPIGNLEDIT+RA+ +LKS I EDTR LL++YNI+ LLSY+ E+
Sbjct: 3 LYVVPTPIGNLEDITIRAINILKSVKFIACEDTRRIQILLKHYNIEGKTLLSYYHPKEAI 62
Query: 142 REQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSAS 201
+ + +++ +++ E VAL+SDAGTP ISDPG +L C+ E IPV +PG A + AL S
Sbjct: 63 QIRKIISLIRKDEDVALVSDAGTPSISDPGFKLINACIKEDIPVEVLPGPCALITALVGS 122
Query: 202 GLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLE 249
GL T F F+GF P+ ++ + + S++ + I Y P ++L LE
Sbjct: 123 GLPTHSFMFLGFAPRKSQESFYKEVFSSD-TGSYILYESPQRILDTLE 169
>sp|Q5XDL7|RSMI_STRP6 Ribosomal RNA small subunit methyltransferase I OS=Streptococcus
pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394)
GN=rsmI PE=3 SV=1
Length = 287
Score = 139 bits (351), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 76/201 (37%), Positives = 117/201 (58%)
Query: 70 LEQSSKRGPLEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKT 129
+++S K LYLV TPIGNL+D+T RA+ LK + I +EDTR++G LL++++I T
Sbjct: 3 VQKSFKDKKTSGTLYLVPTPIGNLQDMTFRAVATLKEVDFICAEDTRNTGLLLKHFDIAT 62
Query: 130 PLLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIP 189
+S+H+ N ++ +++ L G +A +SDAG P ISDPG +L K +D I VV +P
Sbjct: 63 KQISFHEHNSYEKIPDLIDLLISGRSLAQVSDAGMPSISDPGHDLVKAAIDSDIAVVALP 122
Query: 190 GASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLE 249
GASA + AL ASGLA F GFLP+ A + + +TQ+F P+++ L
Sbjct: 123 GASAGITALIASGLAPQPHVFYGFLPRKAGQQKAFFEDKHHYTETQMFCESPYRIKDTLT 182
Query: 250 ETSLLFGYSRYIRYLKILFLF 270
+G + + ++ LF
Sbjct: 183 NMLACYGDRQVVLVRELTKLF 203
>sp|Q89AY5|RSMI_BUCBP Ribosomal RNA small subunit methyltransferase I OS=Buchnera
aphidicola subsp. Baizongia pistaciae (strain Bp)
GN=rsmI PE=3 SV=1
Length = 292
Score = 139 bits (349), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 74/183 (40%), Positives = 112/183 (61%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQR 142
LY+V TPIGNL DI+ RA+ +L+ ++I +E+ HS LL++YNI T S +K NE +
Sbjct: 12 LYIVPTPIGNLNDISYRAINILQHVDLIAAENIFHSQILLKHYNILTRTTSLNKDNEKIK 71
Query: 143 EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASG 202
+T++ +LK + +ALIS++GTP I+DPG L C + I +VPIPG A + AL ASG
Sbjct: 72 SKTLIIQLKNKKNIALISNSGTPLINDPGFYLINECYNHIIKIVPIPGPCAAITALIASG 131
Query: 203 LATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRYIR 262
L + F + GFLP SR + L E +T IF+ H++++ + + + G R I
Sbjct: 132 LPANRFCYEGFLPSKQNSRCKILNQIKEEQRTIIFFEVTHRIIESITDIINILGPKRIIT 191
Query: 263 YLK 265
+ K
Sbjct: 192 FAK 194
>sp|Q8P2A6|RSMI_STRP8 Ribosomal RNA small subunit methyltransferase I OS=Streptococcus
pyogenes serotype M18 (strain MGAS8232) GN=rsmI PE=3
SV=1
Length = 287
Score = 138 bits (348), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 76/201 (37%), Positives = 117/201 (58%)
Query: 70 LEQSSKRGPLEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKT 129
+++S K LYLV TPIGNL+D+T RA+ LK + I +EDTR++G LL++++I T
Sbjct: 3 VQKSFKDKKTSGTLYLVPTPIGNLQDMTFRAVATLKEVDFICAEDTRNTGLLLKHFDIAT 62
Query: 130 PLLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIP 189
+S+H+ N ++ +++ L G +A +SDAG P ISDPG +L K +D I VV +P
Sbjct: 63 KQISFHEHNAYEKIPDLIDLLISGRSLAQVSDAGMPSISDPGHDLVKAAIDSDIAVVALP 122
Query: 190 GASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLE 249
GASA + AL ASGLA F GFL + A + + +TQ+FY P+++ L
Sbjct: 123 GASAGITALIASGLAPQPHVFYGFLSRKAGQQKAFFEDKHHYPETQMFYESPYRIKDTLT 182
Query: 250 ETSLLFGYSRYIRYLKILFLF 270
+G + + ++ LF
Sbjct: 183 NMLACYGDRQVVLVRELTKLF 203
>sp|Q9ZCJ3|RSMI_RICPR Ribosomal RNA small subunit methyltransferase I OS=Rickettsia
prowazekii (strain Madrid E) GN=rsmI PE=3 SV=1
Length = 280
Score = 135 bits (339), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 75/178 (42%), Positives = 109/178 (61%)
Query: 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFN 138
L+ GLY+V+TPIGN EDITLRA+ LK++++IL EDTR S KLL + I T L Y+ +
Sbjct: 3 LKSGLYIVSTPIGNFEDITLRAISTLKNSDIILCEDTRISQKLLAKHYIHTKLQIYNDHS 62
Query: 139 ESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAAL 198
+ + + +++ +K G +V+LISDAGTP ISDPG +L + + + +PG S+ + AL
Sbjct: 63 DYKDREYIISLIKAGNVVSLISDAGTPLISDPGYKLVRDLRNLNYYIEVVPGVSSPITAL 122
Query: 199 SASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFG 256
+ S L TD F F GFLPK S+ + N T IF+ +L+ L +FG
Sbjct: 123 TLSSLPTDRFLFSGFLPKTIESKKKIFAELVNLKATLIFFDTASRLINTLLLAKEIFG 180
>sp|B0SPB4|RSMI_LEPBP Ribosomal RNA small subunit methyltransferase I OS=Leptospira
biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 /
Paris) GN=rsmI PE=3 SV=1
Length = 240
Score = 134 bits (337), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 76/182 (41%), Positives = 109/182 (59%), Gaps = 9/182 (4%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQR 142
LY+VATPIGN+ DITLRA+ VLK +++L E + + L I TP+L+ +K +
Sbjct: 10 LYVVATPIGNMGDITLRAIDVLKEVDLVLCESAKETKSLFHKLGISTPVLALYKDHSETP 69
Query: 143 EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASG 202
VL +LKQG+ +AL+SDAGTPG+SDPG+++ + + I +VP+PGASA A LS SG
Sbjct: 70 FANVLEQLKQGKSMALVSDAGTPGVSDPGSQMVRTARENGISIVPVPGASALTALLSVSG 129
Query: 203 LATDEFTFVGFLPKHARSRTERLMLSANEVKTQI-FYVPPHK-------LLQFLEETSLL 254
+ F+GFL + S+ R + A E++ I FY HK L + ET +L
Sbjct: 130 FQVNPTYFLGFLSEKP-SKKRRELERAREIEGLIVFYESVHKLPRLYPILEELFPETEVL 188
Query: 255 FG 256
G
Sbjct: 189 MG 190
>sp|C5J6H5|RSMI_MYCCR Ribosomal RNA small subunit methyltransferase I OS=Mycoplasma
conjunctivae (strain ATCC 25834 / HRC/581 / NCTC 10147)
GN=rsmI PE=3 SV=1
Length = 238
Score = 134 bits (336), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 79/173 (45%), Positives = 105/173 (60%), Gaps = 3/173 (1%)
Query: 85 LVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTP-LLSYHKFNESQRE 143
LV+TPIGNL+DI+LRAL L+ +++IL EDTR S KLL +Y I L+SYHKFNE +
Sbjct: 7 LVSTPIGNLKDISLRALDTLRDSDIILCEDTRVSQKLLNHYQINNKKLISYHKFNEYKML 66
Query: 144 QTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGL 203
+ N L QG + LISDAG P ISDPG L + I V IPGA+A ++A + SG
Sbjct: 67 DLIDNYLNQGLQICLISDAGVPTISDPGQILVNWAHENDIEVDIIPGANALISAFALSGY 126
Query: 204 ATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFG 256
F F GFL + +++ L +V + IFY+ P KL+ LE L+G
Sbjct: 127 KG-SFYFGGFLDSKKQQIIKQISLLDPKV-SYIFYISPFKLVYTLEIIRDLYG 177
>sp|Q98RF5|RSMI_MYCPU Ribosomal RNA small subunit methyltransferase I OS=Mycoplasma
pulmonis (strain UAB CTIP) GN=rsmI PE=3 SV=1
Length = 222
Score = 131 bits (330), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 79/175 (45%), Positives = 101/175 (57%), Gaps = 4/175 (2%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQR 142
+Y+V TPIGNL DITLRAL LK + I EDTR S LL +Y I PL SYHKFNE +
Sbjct: 4 IYIVGTPIGNLSDITLRALETLKKVDYIACEDTRVSKILLNHYQINKPLFSYHKFNEKSK 63
Query: 143 EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASG 202
+ ++ G VALISD+G P ISDPG L + + I + IPG SAF A S
Sbjct: 64 LNYIFELVESGSDVALISDSGMPVISDPGFLLIREAKKKNIDLEVIPGVSAFSMAFVKSS 123
Query: 203 LATDEFTFVGFL-PKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFG 256
F+F+GFL K + + E LSA + I YV +KL+Q L++ +FG
Sbjct: 124 FPL-PFSFLGFLNDKTGKRKNELKKLSAG--ISYISYVSKYKLIQTLKDLKEVFG 175
>sp|Q661J3|RSMI_BORGA Ribosomal RNA small subunit methyltransferase I OS=Borrelia garinii
(strain PBi) GN=rsmI PE=3 SV=1
Length = 224
Score = 130 bits (327), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/170 (41%), Positives = 98/170 (57%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQR 142
LY+V TPIGNLEDIT RA+ VLKS NVI +EDTR + KLL Y I ++S + E+++
Sbjct: 2 LYIVGTPIGNLEDITYRAVDVLKSVNVIFAEDTRVTIKLLSRYKINKKMISCNAVTENKK 61
Query: 143 EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASG 202
+ +L+ L +G+ VA +SDAGTPG+SDPG+ L E V PIPG S+F +S +
Sbjct: 62 IRLLLDYLAKGDSVAFVSDAGTPGLSDPGSLLVAAAFREGYKVCPIPGVSSFNTIVSVNP 121
Query: 203 LATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETS 252
F GFLP R +++ + H+LL+ L E S
Sbjct: 122 FRDKSVLFEGFLPNKGLKRFKKIAELYKRGDAFVLLESGHRLLKLLVEIS 171
>sp|O83940|RSMI_TREPA Ribosomal RNA small subunit methyltransferase I OS=Treponema
pallidum (strain Nichols) GN=rsmI PE=3 SV=1
Length = 274
Score = 116 bits (291), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/217 (34%), Positives = 100/217 (46%), Gaps = 49/217 (22%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQ- 141
LY+VATPIGNL DITLRAL VL++ +V+ EDTR + LL ++ I L+S NE+Q
Sbjct: 4 LYVVATPIGNLADITLRALDVLRTVDVVACEDTRRTRALLSHFGIHKRLVSCRAHNEAQA 63
Query: 142 -----------------------REQTVLNRLKQGEIV---------------------- 156
R+ R + GE V
Sbjct: 64 ARRLIHFLSTPISAFLSPEKGRGRQSARRTRARPGETVGTAALQLAAEATGEQEVCGSPH 123
Query: 157 ---ALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGF 213
A +SDAGTPG+SDPG L + D VVPIPGASA LS +G+ F GF
Sbjct: 124 AQVAYVSDAGTPGVSDPGAVLVRAVRDAGHTVVPIPGASALTTLLSVAGVRDKTVLFEGF 183
Query: 214 LPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEE 250
L H R RL+ + + Y P+++ + LE+
Sbjct: 184 LSPHPGRRRARLVQLCAQRVAFVLYESPYRVQKLLED 220
>sp|B5Y7N9|RSMI_COPPD Ribosomal RNA small subunit methyltransferase I
OS=Coprothermobacter proteolyticus (strain ATCC 35245 /
DSM 5265 / BT) GN=rsmI PE=3 SV=1
Length = 219
Score = 115 bits (288), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/142 (42%), Positives = 88/142 (61%), Gaps = 2/142 (1%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQR 142
+YLV TP+GNLEDITLRA+RVL A+V+ E + KLL + IK PL+ + + +
Sbjct: 2 IYLVGTPLGNLEDITLRAIRVLGEADVVACESKERALKLLSHLQIKKPLIYLREASRASD 61
Query: 143 EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASG 202
+ ++ KQG+ VA+ +DAG PGISDPG L + + IP +PG SA +++ SG
Sbjct: 62 VKRIIELHKQGKTVAVTTDAGMPGISDPGAYLVRELSAQGIPFTVVPGPSALCMSITVSG 121
Query: 203 LATDEFTFVGFLP-KHARSRTE 223
L + + F+GFLP K + R E
Sbjct: 122 L-EEPWAFLGFLPLKEGKRRRE 142
>sp|P56204|RSMI_HELPY Ribosomal RNA small subunit methyltransferase I OS=Helicobacter
pylori (strain ATCC 700392 / 26695) GN=rsmI PE=3 SV=1
Length = 287
Score = 112 bits (280), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 73/188 (38%), Positives = 100/188 (53%), Gaps = 21/188 (11%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQ-----------YYNIKTPL 131
LY + TPIGNL DITLRAL VL+ V L EDTR S +LL + NI T
Sbjct: 2 LYFLPTPIGNLADITLRALEVLERCEVFLCEDTRVSKRLLHLLAQNPIISHSFPNIATKK 61
Query: 132 LSYHKFNESQREQTVLNRLKQG---EIVALISDAGTPGISDPGTELAKLCVDEKIPVVPI 188
+ F+ S +Q LN++K + +A++SDAG P +SDPG LA + I +
Sbjct: 62 REFIAFH-SHNDQEFLNQIKPSFFDKEIAVMSDAGMPSLSDPGMSLAAYALKHNIQYDVL 120
Query: 189 PGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSAN-----EVKTQ-IFYVPPH 242
PGA+A A ASG F + GFLP ++ R ++ N E KT +FY PH
Sbjct: 121 PGANALTTAFCASGFLEGRFFYAGFLPHKSKERRLKIAKILNALAYLEEKTPVVFYESPH 180
Query: 243 KLLQFLEE 250
+LL+ L++
Sbjct: 181 RLLETLKD 188
>sp|P0A640|RSMI_MYCTU Ribosomal RNA small subunit methyltransferase I OS=Mycobacterium
tuberculosis GN=rsmI PE=3 SV=1
Length = 285
Score = 108 bits (271), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/179 (35%), Positives = 94/179 (52%), Gaps = 2/179 (1%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTP--LLSYHKFNES 140
L L ATP+G D + R L +A+V+ +EDTR KL + +I+ ++S E+
Sbjct: 6 LLLGATPLGQPSDASPRLAAALATADVVAAEDTRRVRKLAKALDIRIGGRVVSLFDRVEA 65
Query: 141 QREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSA 200
R +L+ + G V ++SDAGTP ISDPG L C+D + V +PG SA AL
Sbjct: 66 LRVTALLDAINNGATVLVVSDAGTPVISDPGYRLVAACIDAGVSVTCLPGPSAVTTALVM 125
Query: 201 SGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSR 259
SGL ++F F GF P+ +R L A E +T +F+ P +L L + G +R
Sbjct: 126 SGLPAEKFCFEGFAPRKGAARRAWLAELAEERRTCVFFESPRRLAACLNDAVEQLGGAR 184
>sp|P0A641|RSMI_MYCBO Ribosomal RNA small subunit methyltransferase I OS=Mycobacterium
bovis (strain ATCC BAA-935 / AF2122/97) GN=rsmI PE=3
SV=1
Length = 285
Score = 108 bits (271), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/179 (35%), Positives = 94/179 (52%), Gaps = 2/179 (1%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTP--LLSYHKFNES 140
L L ATP+G D + R L +A+V+ +EDTR KL + +I+ ++S E+
Sbjct: 6 LLLGATPLGQPSDASPRLAAALATADVVAAEDTRRVRKLAKALDIRIGGRVVSLFDRVEA 65
Query: 141 QREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSA 200
R +L+ + G V ++SDAGTP ISDPG L C+D + V +PG SA AL
Sbjct: 66 LRVTALLDAINNGATVLVVSDAGTPVISDPGYRLVAACIDAGVSVTCLPGPSAVTTALVM 125
Query: 201 SGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSR 259
SGL ++F F GF P+ +R L A E +T +F+ P +L L + G +R
Sbjct: 126 SGLPAEKFCFEGFAPRKGAARRAWLAELAEERRTCVFFESPRRLAACLNDAVEQLGGAR 184
>sp|Q9ZLS8|RSMI_HELPJ Ribosomal RNA small subunit methyltransferase I OS=Helicobacter
pylori (strain J99) GN=rsmI PE=3 SV=1
Length = 289
Score = 108 bits (269), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 98/188 (52%), Gaps = 21/188 (11%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFN---- 138
LY + TPIGNL DITLR L VL+ V L EDTR S +LL K P++S+ N
Sbjct: 2 LYFLPTPIGNLADITLRTLEVLERCEVFLCEDTRVSKRLLHLL-AKNPIISHSFPNIAAK 60
Query: 139 -------ESQREQTVLNRLKQG---EIVALISDAGTPGISDPGTELAKLCVDEKIPVVPI 188
S +Q LN+++ + +A++SDAG P +SDPG L + + +
Sbjct: 61 KREFIAFHSHNDQEFLNQIEPSFFDKEIAVMSDAGMPSLSDPGMSLVAYALKHNLQYDVL 120
Query: 189 PGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSAN-----EVKTQ-IFYVPPH 242
PGA+A A ASG F + GFLP ++ R R++ N E KT +FY PH
Sbjct: 121 PGANALTTAFCASGFLEGRFFYAGFLPHKSKERRLRIIKILNALAYLEEKTPVVFYESPH 180
Query: 243 KLLQFLEE 250
+LL+ L +
Sbjct: 181 RLLETLRD 188
>sp|Q053G0|RSMI_LEPBL Ribosomal RNA small subunit methyltransferase I OS=Leptospira
borgpetersenii serovar Hardjo-bovis (strain L550)
GN=rsmI PE=3 SV=1
Length = 253
Score = 90.5 bits (223), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 84/165 (50%)
Query: 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFN 138
L+ L LV+ +GN D+T RA +L+ ++++ E+ R + LL+ +I L ++
Sbjct: 5 LQGALVLVSVSLGNFGDLTARARHLLEYCDILIGEEFRTTSTLLKSLSISKQFLLCNEHT 64
Query: 139 ESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAAL 198
+ +++ + + L+SDAGTPGI DPG EL + V PG AF AAL
Sbjct: 65 TPEEIRSLGQIVVDSGLTVLVSDAGTPGIEDPGRELVGEVLRRGGRVQSAPGPIAFGAAL 124
Query: 199 SASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHK 243
S SG T FTF GFL + + R L T +FY P++
Sbjct: 125 SISGFKTSPFTFCGFLSRDSSERKLELSRYLKPGHTVVFYETPYR 169
>sp|P47302|RSMI_MYCGE Ribosomal RNA small subunit methyltransferase I OS=Mycoplasma
genitalium (strain ATCC 33530 / G-37 / NCTC 10195)
GN=rsmI PE=3 SV=1
Length = 277
Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 85/178 (47%), Gaps = 6/178 (3%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSY---HKFNE 139
L +VATPIGN+++I+ RA + L+ V+ ED+R + K+L NI + + F E
Sbjct: 4 LKVVATPIGNIQEISERAKKALQDCEVLFCEDSRVTRKMLDLLNIDCKQKKFVINNSFKE 63
Query: 140 SQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCV--DEKIPVVPIPGASAFVAA 197
Q T L+SDAG P +SDPG E+ + +++I + I G SA +
Sbjct: 64 KQN-LTFAEEFITNFKCCLVSDAGYPSLSDPGNEMINWIISKNKEIRIEVINGPSALMCG 122
Query: 198 LSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLF 255
L SG T F+GFL L N+ T +F+ H+L LE +F
Sbjct: 123 LITSGFKTTPLLFLGFLSHKQNQLKNYLSTYQNQKSTIVFFEAVHRLENTLETVKNVF 180
>sp|P75046|RSMI_MYCPN Ribosomal RNA small subunit methyltransferase I OS=Mycoplasma
pneumoniae (strain ATCC 29342 / M129) GN=rsmI PE=3 SV=1
Length = 276
Score = 84.3 bits (207), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 84/180 (46%), Gaps = 6/180 (3%)
Query: 81 PGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNI---KTPLLSYHKF 137
P L ++ATPIGN+E+++ R L V+ EDTR + KLL I + ++F
Sbjct: 2 PALKVIATPIGNIEEVSPRVKAALTKCEVLFCEDTRVTKKLLGLLGIDFSNKQFIINNEF 61
Query: 138 NESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDE--KIPVVPIPGASAFV 195
E Q V N + Q L+SDAG P +SDPG L + + +I + I G SA V
Sbjct: 62 KEKQNLSKVANLIHQYH-CGLVSDAGYPSVSDPGHILVEYVRTQLPQIAIEVINGPSALV 120
Query: 196 AALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLF 255
L SG F+GFL T+ L N T + + H+L Q LE +F
Sbjct: 121 CGLVTSGFPESPLLFLGFLDHKPTQVTQTLKHYQNFQGTIVLFEAVHRLQQTLEVIQTVF 180
>sp|A0RMQ7|RSMI_CAMFF Ribosomal RNA small subunit methyltransferase I OS=Campylobacter
fetus subsp. fetus (strain 82-40) GN=rsmI PE=3 SV=1
Length = 271
Score = 82.0 bits (201), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 63/177 (35%), Positives = 87/177 (49%), Gaps = 7/177 (3%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPL-------LSYH 135
LY + TPIGNL+DI+ R L VL+ +I+ EDTR + L+ N K L S H
Sbjct: 2 LYFLPTPIGNLDDISKRCLDVLELCEIIICEDTRVTKSLITLLNAKFGLQISPKEFYSLH 61
Query: 136 KFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFV 195
NE + +I SDAG P ISDPG L K I + GA+A +
Sbjct: 62 THNEKDFFDKFDKVRLETKICIYASDAGMPCISDPGISLVKFAQQNSIKYEVLSGANALL 121
Query: 196 AALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETS 252
A +ASG+ EFTF+GFLP + R + + N + I Y P ++L ++ S
Sbjct: 122 LAAAASGIIEKEFTFLGFLPNLGKERAIAIQNALNSLYPVIIYESPKRILSLIKSIS 178
>sp|Q0VQ05|CYSG_ALCBS Siroheme synthase OS=Alcanivorax borkumensis (strain SK2 / ATCC
700651 / DSM 11573) GN=cysG PE=3 SV=1
Length = 461
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 82/189 (43%), Gaps = 18/189 (9%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSY-------H 135
+YLV G+ + +T RALR+L+ A+V+L + R GK + + L Y H
Sbjct: 220 VYLVGAGPGDPDLLTFRALRLLQKADVVLYD--RLVGKGIVDLARRDAELVYVGKARDKH 277
Query: 136 KFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFV 195
+ + +++ KQG+ V + G P I G E L V E I +PG +A
Sbjct: 278 ALPQDNINELLVHYAKQGKKVCRLK-GGDPFIFGRGGEEIDLIVAEGIDFQVVPGITAAS 336
Query: 196 AALSASGL---ATDEFTFVGFLPKHARSRTERLMLS--ANEVKTQIFYVPPHKLLQFLEE 250
S +G+ D V F+ H + + L +E +T +FY+ L+ E
Sbjct: 337 GCASYAGIPLTHRDHAQSVRFVTGHRKDGSVDLDWKHLVSETETVVFYM---GLVGLREI 393
Query: 251 TSLLFGYSR 259
S L + R
Sbjct: 394 CSQLIAHGR 402
>sp|Q21K21|CYSG_SACD2 Siroheme synthase OS=Saccharophagus degradans (strain 2-40 / ATCC
43961 / DSM 17024) GN=cysG PE=3 SV=1
Length = 458
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 75/171 (43%), Gaps = 19/171 (11%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILS---------EDTRHSGKLLQYYNIKTPLLS 133
+YLV G+ + +T +ALR+++ A V+L E TR + + Y K +
Sbjct: 218 VYLVGAGPGDPDLLTFKALRLMQQAEVVLYDRLVSEPILEMTRRDAERI-YVGKKR---A 273
Query: 134 YHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASA 193
H + + Q +L +QG+ V L G P I G E L + KIP +PG +A
Sbjct: 274 EHAVPQQKINQMLLELAQQGKRV-LRLKGGDPFIFGRGGEEIDLLAEHKIPFQVVPGITA 332
Query: 194 FVAALSASGL---ATDEFTFVGFLPKHARSRTERLMLS--ANEVKTQIFYV 239
S SG+ D V F+ H + E S ++ +T +FY+
Sbjct: 333 ASGCASYSGIPLTHRDYSQSVRFITGHLQEGKENFRWSEFVDKQQTLVFYM 383
>sp|O34744|SUMT_BACSU Uroporphyrinogen-III C-methyltransferase OS=Bacillus subtilis
(strain 168) GN=sumT PE=2 SV=1
Length = 257
Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 81/169 (47%), Gaps = 14/169 (8%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLL------SYHK 136
+Y+V G+ + +T++AL+ ++ A+VIL D + ++LQY + L+ +H
Sbjct: 4 VYIVGAGPGDPDLLTIKALKAIEKADVILY-DRLVNKEILQYAKEQADLIYCGKLPDFHT 62
Query: 137 FNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVA 196
+ + ++ ++G++V + G P + G E A+ + IP IPG ++ +A
Sbjct: 63 MKQETINRFLVKYAQKGKMVVRLK-GGDPFVFGRGGEEAECLSENGIPFEIIPGITSGIA 121
Query: 197 ALSASGLAT---DEFTFVGFLPKHARSR---TERLMLSANEVKTQIFYV 239
A + +G+ D + V F+ H + E+ A + T + Y+
Sbjct: 122 AAAYAGIPVTHRDAGSNVAFVTGHYKKEEDFEEKWKALATGIDTLVIYM 170
>sp|Q8TXC7|DPHB_METKA Diphthine synthase OS=Methanopyrus kandleri (strain AV19 / DSM 6324
/ JCM 9639 / NBRC 100938) GN=dphB PE=3 SV=1
Length = 263
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 65/144 (45%), Gaps = 8/144 (5%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNE--- 139
LYLV + ++ D+TLRAL VL S ++L DT S + ++K L + E
Sbjct: 4 LYLVGGGLSDVRDLTLRALEVLASVELVLV-DTYTSVYDVSEGDLKRLLNGFGGDPEVRM 62
Query: 140 -SQR--EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVA 196
S+R E+ + + + VAL+S G P + L D V I G S F A
Sbjct: 63 CSRRDLEERFFDLCEGYDRVALLS-PGDPMAATTHVALVVEAADRGWDVEIINGVSVFTA 121
Query: 197 ALSASGLATDEFTFVGFLPKHARS 220
A S SGL F +P + RS
Sbjct: 122 APSKSGLEMYRFGRTATIPLNVRS 145
>sp|Q31GG8|CYSG_THICR Siroheme synthase OS=Thiomicrospira crunogena (strain XCL-2)
GN=cysG PE=3 SV=1
Length = 473
Score = 40.4 bits (93), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 16/121 (13%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSE----------DTRHSGKLLQYYNIKTPLL 132
+Y++ G+ + +T + LR+L+ A+VIL + R + ++ Y K
Sbjct: 225 VYIIGAGPGDPDLMTFKGLRLLQQADVILYDRLVAPEILEMGRREAERI--YVGKKE--- 279
Query: 133 SYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGAS 192
+HK ++ Q +++ +QG+ VA + G P I G E +L V +P +PG +
Sbjct: 280 KWHKMDQKDINQMLVDLARQGKRVARLK-GGDPYIFGRGAEEVELLVQHDVPYQVVPGIT 338
Query: 193 A 193
A
Sbjct: 339 A 339
>sp|P29928|SUMT_BACME Uroporphyrinogen-III C-methyltransferase OS=Bacillus megaterium
GN=cobA PE=3 SV=1
Length = 238
Score = 39.7 bits (91), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 75/169 (44%), Gaps = 14/169 (8%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLL------SYHK 136
+YLV G+ + ITL+ L+ ++ A+VIL D + LL+Y ++ +YH
Sbjct: 4 VYLVGAGPGDPDLITLKGLKAIQQADVILY-DRLVNKDLLEYAKSDADIIYCGKLPNYHT 62
Query: 137 FNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVA 196
+ ++ K+G+IV + G P + G E A+ V + I +PG ++ +A
Sbjct: 63 LKQETINNFLVKFAKKGKIVTRLK-GGDPFVFGRGGEEAEALVQQGISFEIVPGITSGIA 121
Query: 197 ALSASGLATDE------FTFVGFLPKHARSRTERLMLSANEVKTQIFYV 239
A + +G+ F FV K ++ + A V T Y+
Sbjct: 122 AAAYAGIPVTHREYSASFAFVAGHRKDSKHDAIKWDSLAKGVDTLAIYM 170
>sp|C3JY53|CYSG_PSEFS Siroheme synthase OS=Pseudomonas fluorescens (strain SBW25) GN=cysG
PE=3 SV=1
Length = 464
Score = 39.7 bits (91), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 82/186 (44%), Gaps = 14/186 (7%)
Query: 66 SNLILEQSSKRGPLEPG-LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQY 124
L++E+ + P PG +YLV G+ + +T RALR+++ A+V+L D + +L+
Sbjct: 200 ERLLIEKVNGAPPYAPGEVYLVGAGPGDPDLLTFRALRLMQQADVVLY-DRLVAPAILEL 258
Query: 125 YNIKTPLL------SYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLC 178
+ + H + Q Q +++ KQG+ V L G P I G E +
Sbjct: 259 CRRDAERIYVGKRRADHAVPQDQINQQLVDLAKQGKRV-LRLKGGDPFIFGRGGEEIEEL 317
Query: 179 VDEKIPVVPIPGASAFVAALSASGLA---TDEFTFVGFLPKHARSRTERLMLS--ANEVK 233
IP +PG +A + +G+ D V F+ H ++ T L +
Sbjct: 318 AAHGIPFQVVPGITAASGCAAYAGIPLTHRDYAQSVRFITGHLKNGTSDLPWQDLVGPSQ 377
Query: 234 TQIFYV 239
T +FY+
Sbjct: 378 TLVFYM 383
>sp|Q2Y6L7|CYSG_NITMU Siroheme synthase OS=Nitrosospira multiformis (strain ATCC 25196 /
NCIMB 11849) GN=cysG PE=3 SV=2
Length = 472
Score = 39.3 bits (90), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 8/132 (6%)
Query: 78 PLEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTP-LLSYHK 136
P++ +YLV G+ E +T RA+R+++ A+V++ D S ++L TP + + +
Sbjct: 218 PVKGEVYLVGAGPGDPELLTFRAMRLMQQADVVVY-DRLVSPEILDMLRRDTPRIYAGKE 276
Query: 137 FNESQREQTVLNRL-----KQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGA 191
N Q +N L K+G+ V L G P I G E + IP +PG
Sbjct: 277 RNRHTMPQESINDLLVRLAKEGKRV-LRLKGGDPFIFGRGGEEIETLAGHGIPFEVVPGI 335
Query: 192 SAFVAALSASGL 203
+A A S +G+
Sbjct: 336 TAANGAASYAGI 347
>sp|Q7N8L2|CYSG_PHOLL Siroheme synthase OS=Photorhabdus luminescens subsp. laumondii
(strain TT01) GN=cysG PE=3 SV=1
Length = 470
Score = 39.3 bits (90), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 90/228 (39%), Gaps = 19/228 (8%)
Query: 9 LMANSLATTGLSKTSWQSRPLLSFLRTQTLLNSLSLYPKI---NYLLLCSCSQSQTSPDF 65
L+ +SL T W+ R R ++ S + + + +L + Q Q +
Sbjct: 146 LLPSSLGTMAKIAGKWRER---VKQRLTSMRQRRSFWEQAFNGRFAMLVANGQIQQAEKQ 202
Query: 66 SNLILEQSSKRGPLEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYY 125
LEQS +G L LV G+ +TL+ L+V++ A+V+L + S L
Sbjct: 203 LEQQLEQSDLQGELA----LVGAGPGDPGLLTLKGLQVIQQADVVLYDHLVSSDVLDLIR 258
Query: 126 NIKTPLLSYHKFNESQREQTVLNRL-----KQGEIVALISDAGTPGISDPGTELAKLCVD 180
+ + Q NRL +QG+ V + G P I G E ++
Sbjct: 259 RDADKICVGKRAGNHSVSQEETNRLIVKFARQGKKVVRLK-GGDPFIFGRGGEELQVAAS 317
Query: 181 EKIPVVPIPGASAFVAALSASGL---ATDEFTFVGFLPKHARSRTERL 225
IP +PG +A + A + +G+ + + F+ H R + L
Sbjct: 318 AGIPFQVVPGITAAIGATAYAGIPLTHREHSQSITFITGHCREKGNEL 365
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,792,432
Number of Sequences: 539616
Number of extensions: 3515560
Number of successful extensions: 9852
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 86
Number of HSP's that attempted gapping in prelim test: 9748
Number of HSP's gapped (non-prelim): 131
length of query: 273
length of database: 191,569,459
effective HSP length: 116
effective length of query: 157
effective length of database: 128,974,003
effective search space: 20248918471
effective search space used: 20248918471
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)