Query 024054
Match_columns 273
No_of_seqs 190 out of 1660
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 08:35:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024054.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024054hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14994 SAM-dependent 16S rib 100.0 3.4E-40 7.3E-45 303.9 23.2 194 77-270 8-201 (287)
2 COG0313 Predicted methyltransf 100.0 6.3E-37 1.4E-41 277.1 20.1 192 79-270 3-194 (275)
3 COG0007 CysG Uroporphyrinogen- 100.0 1.9E-35 4.1E-40 264.7 20.0 189 79-272 2-203 (244)
4 PRK15473 cbiF cobalt-precorrin 100.0 3.7E-35 8E-40 266.4 21.0 187 80-270 7-203 (257)
5 PRK06136 uroporphyrin-III C-me 100.0 6.1E-35 1.3E-39 262.5 20.9 186 79-269 1-203 (249)
6 COG2875 CobM Precorrin-4 methy 100.0 4.4E-35 9.6E-40 258.2 19.1 188 80-268 2-196 (254)
7 TIGR01465 cobM_cbiF precorrin- 100.0 1E-34 2.2E-39 257.8 21.2 187 83-270 1-194 (229)
8 PLN02625 uroporphyrin-III C-me 100.0 6E-34 1.3E-38 259.3 22.2 188 77-269 11-215 (263)
9 TIGR01469 cobA_cysG_Cterm urop 100.0 6E-34 1.3E-38 253.7 20.4 184 82-270 1-200 (236)
10 PRK05765 precorrin-3B C17-meth 100.0 3.2E-33 6.9E-38 252.5 18.8 183 81-269 2-194 (246)
11 PRK15478 cbiH cobalt-precorrin 100.0 5.5E-33 1.2E-37 250.4 20.3 186 82-270 1-196 (241)
12 TIGR00096 probable S-adenosylm 100.0 1.4E-32 3E-37 251.8 19.6 187 82-269 1-187 (276)
13 COG1010 CobJ Precorrin-3B meth 100.0 1E-32 2.2E-37 243.8 17.9 185 79-268 1-197 (249)
14 PRK07168 bifunctional uroporph 100.0 1.8E-32 4E-37 267.9 21.0 186 79-270 1-202 (474)
15 TIGR01467 cobI_cbiL precorrin- 100.0 5.3E-32 1.2E-36 241.3 20.2 185 81-269 1-203 (230)
16 PF00590 TP_methylase: Tetrapy 100.0 6.9E-32 1.5E-36 235.3 17.9 185 82-270 1-197 (210)
17 PRK05948 precorrin-2 methyltra 100.0 1.4E-31 3E-36 241.0 19.4 186 80-270 3-208 (238)
18 PRK10637 cysG siroheme synthas 100.0 5.2E-31 1.1E-35 257.0 22.1 188 78-270 213-414 (457)
19 TIGR01466 cobJ_cbiH precorrin- 100.0 4.8E-31 1.1E-35 236.2 19.4 182 83-270 1-195 (239)
20 PRK05576 cobalt-precorrin-2 C( 100.0 4.3E-31 9.4E-36 235.7 18.2 183 80-269 1-200 (229)
21 PRK05990 precorrin-2 C(20)-met 100.0 8E-31 1.7E-35 236.2 20.0 184 80-269 2-210 (241)
22 COG2243 CobF Precorrin-2 methy 100.0 9E-30 1.9E-34 227.1 19.0 187 80-270 1-204 (234)
23 PRK05991 precorrin-3B C17-meth 100.0 9.1E-30 2E-34 230.3 19.2 182 79-269 1-200 (250)
24 PRK05787 cobalt-precorrin-6Y C 100.0 5.8E-30 1.3E-34 224.3 17.2 178 82-270 1-181 (210)
25 TIGR02467 CbiE precorrin-6y C5 100.0 1.1E-29 2.5E-34 222.6 16.2 175 85-270 1-179 (204)
26 PRK08284 precorrin 6A synthase 100.0 2.4E-28 5.1E-33 221.8 18.3 177 81-269 2-211 (253)
27 COG2241 CobL Precorrin-6B meth 100.0 1.9E-28 4.2E-33 215.8 16.9 174 82-269 1-178 (210)
28 TIGR00522 dph5 diphthine synth 100.0 4.6E-28 1E-32 220.3 17.7 184 82-270 1-211 (257)
29 TIGR02434 CobF precorrin-6A sy 100.0 8.1E-28 1.7E-32 217.8 17.7 174 82-269 2-210 (249)
30 PRK04160 diphthine synthase; P 99.9 3E-26 6.4E-31 208.1 19.1 184 82-269 1-210 (258)
31 PTZ00175 diphthine synthase; P 99.9 9E-26 1.9E-30 206.6 20.1 183 82-269 2-225 (270)
32 KOG1527 Uroporphyrin III methy 99.9 4.8E-26 1E-30 210.8 14.2 185 81-268 256-451 (506)
33 COG1798 DPH5 Diphthamide biosy 99.7 8.9E-16 1.9E-20 137.4 15.7 182 82-268 1-208 (260)
34 KOG3123 Diphthine synthase [Tr 99.1 7.4E-10 1.6E-14 97.3 11.9 182 82-269 1-224 (272)
35 COG3956 Protein containing tet 99.1 4.4E-09 9.6E-14 98.3 14.6 178 79-268 1-192 (488)
36 TIGR01921 DAP-DH diaminopimela 90.9 11 0.00024 35.8 14.8 162 101-268 55-237 (324)
37 COG0391 Uncharacterized conser 66.0 54 0.0012 31.2 9.6 32 81-115 167-199 (323)
38 TIGR01819 F420_cofD LPPG:FO 2- 62.9 34 0.00074 32.2 7.6 81 82-185 161-242 (297)
39 TIGR03365 Bsubt_queE 7-cyano-7 60.8 25 0.00054 31.5 6.2 57 139-196 58-114 (238)
40 COG1712 Predicted dinucleotide 53.7 1.6E+02 0.0034 27.1 9.9 108 82-200 2-131 (255)
41 COG0602 NrdG Organic radical a 53.6 37 0.00081 30.1 5.9 52 139-192 58-109 (212)
42 COG0120 RpiA Ribose 5-phosphat 48.7 68 0.0015 29.1 6.8 111 81-204 21-155 (227)
43 COG1064 AdhP Zn-dependent alco 48.5 1.7E+02 0.0036 28.1 9.8 188 41-254 136-327 (339)
44 PRK05443 polyphosphate kinase; 46.8 94 0.002 32.7 8.5 84 100-185 332-425 (691)
45 TIGR00284 dihydropteroate synt 44.8 2E+02 0.0043 29.1 10.1 51 82-132 180-232 (499)
46 cd07186 CofD_like LPPG:FO 2-ph 44.4 1.6E+02 0.0035 27.8 8.9 73 94-185 171-245 (303)
47 cd01524 RHOD_Pyr_redox Member 42.5 1.3E+02 0.0029 21.9 7.8 83 97-191 2-84 (90)
48 COG1634 Uncharacterized Rossma 40.4 49 0.0011 30.0 4.6 72 81-164 53-124 (232)
49 COG1504 Uncharacterized conser 40.2 93 0.002 25.2 5.6 81 106-194 20-101 (121)
50 TIGR02495 NrdG2 anaerobic ribo 39.2 1.1E+02 0.0024 25.7 6.5 54 138-193 48-101 (191)
51 PRK13606 LPPG:FO 2-phospho-L-l 36.9 1.9E+02 0.0042 27.3 8.1 81 82-185 164-245 (303)
52 COG1737 RpiR Transcriptional r 36.9 3.3E+02 0.0072 24.8 10.1 103 141-250 118-224 (281)
53 PRK00861 putative lipid kinase 35.8 1.7E+02 0.0037 26.7 7.6 51 149-205 53-103 (300)
54 PRK05301 pyrroloquinoline quin 35.6 1.3E+02 0.0028 28.5 7.1 47 145-192 53-100 (378)
55 COG4810 EutS Ethanolamine util 34.4 1.3E+02 0.0029 23.9 5.6 99 144-264 13-116 (121)
56 PRK13057 putative lipid kinase 34.2 2E+02 0.0042 26.2 7.7 50 150-205 47-96 (287)
57 PRK14719 bifunctional RNAse/5- 34.2 2E+02 0.0043 27.7 8.0 73 107-186 24-99 (360)
58 PRK10017 colanic acid biosynth 33.8 1.9E+02 0.0041 28.4 7.9 45 83-128 151-197 (426)
59 PLN02335 anthranilate synthase 33.2 36 0.00079 30.2 2.6 39 147-190 12-50 (222)
60 COG3964 Predicted amidohydrola 32.7 1E+02 0.0022 29.5 5.5 144 57-204 95-263 (386)
61 COG0813 DeoD Purine-nucleoside 32.4 3.2E+02 0.0069 24.9 8.4 44 54-108 39-82 (236)
62 TIGR00238 KamA family protein. 32.2 2.8E+02 0.0061 26.1 8.6 39 141-180 145-187 (331)
63 PRK02261 methylaspartate mutas 31.4 2.9E+02 0.0063 22.6 9.9 119 79-199 1-128 (137)
64 TIGR02109 PQQ_syn_pqqE coenzym 31.2 1.6E+02 0.0034 27.6 6.7 44 145-189 44-88 (358)
65 TIGR00824 EIIA-man PTS system, 31.1 1.4E+02 0.003 23.6 5.5 49 143-197 48-98 (116)
66 cd06404 PB1_aPKC PB1 domain is 30.8 34 0.00075 26.1 1.7 51 139-190 22-83 (83)
67 PF00781 DAGK_cat: Diacylglyce 30.4 1.9E+02 0.0041 22.8 6.2 51 149-205 50-104 (130)
68 cd00006 PTS_IIA_man PTS_IIA, P 30.1 2.7E+02 0.0058 21.9 7.0 54 143-202 47-102 (122)
69 KOG4058 Uncharacterized conser 30.0 87 0.0019 27.0 4.2 44 222-265 129-172 (199)
70 COG1597 LCB5 Sphingosine kinas 30.0 3.2E+02 0.0069 25.4 8.5 53 148-206 53-106 (301)
71 COG0421 SpeE Spermidine syntha 28.8 1.5E+02 0.0032 27.6 5.9 37 81-123 78-114 (282)
72 PF04055 Radical_SAM: Radical 28.7 1.3E+02 0.0029 23.4 5.1 63 139-202 30-100 (166)
73 cd00423 Pterin_binding Pterin 28.5 4.4E+02 0.0095 23.7 9.3 107 82-192 39-176 (258)
74 PF02780 Transketolase_C: Tran 28.4 44 0.00095 26.4 2.1 8 152-159 8-15 (124)
75 PF07991 IlvN: Acetohydroxy ac 28.3 3.9E+02 0.0084 23.0 8.2 48 152-205 3-51 (165)
76 TIGR00511 ribulose_e2b2 ribose 28.2 2.4E+02 0.0053 26.3 7.4 56 142-200 128-183 (301)
77 COG3980 spsG Spore coat polysa 28.2 2.2E+02 0.0048 27.0 6.8 72 51-126 132-207 (318)
78 PRK08535 translation initiatio 28.1 2.4E+02 0.0052 26.4 7.3 57 141-200 132-188 (310)
79 COG0113 HemB Delta-aminolevuli 27.9 3E+02 0.0065 26.3 7.7 95 139-253 232-329 (330)
80 PRK09456 ?-D-glucose-1-phospha 27.5 3.7E+02 0.0081 22.6 9.8 56 188-250 141-196 (199)
81 PRK12361 hypothetical protein; 27.2 3.1E+02 0.0068 27.5 8.4 50 150-204 294-343 (547)
82 PRK11914 diacylglycerol kinase 27.1 2.2E+02 0.0048 26.1 6.8 51 149-205 60-110 (306)
83 PF02006 DUF137: Protein of un 27.1 97 0.0021 26.9 4.0 48 185-238 69-116 (178)
84 cd01335 Radical_SAM Radical SA 26.6 2.1E+02 0.0046 22.9 6.1 47 146-193 37-85 (204)
85 TIGR03855 NAD_NadX aspartate d 26.3 1.1E+02 0.0024 27.4 4.5 50 141-191 49-98 (229)
86 PF06414 Zeta_toxin: Zeta toxi 25.9 75 0.0016 27.2 3.3 102 79-188 13-125 (199)
87 PRK05637 anthranilate synthase 25.7 55 0.0012 28.8 2.4 6 189-194 52-57 (208)
88 TIGR03705 poly_P_kin polyphosp 25.7 3.2E+02 0.007 28.7 8.3 82 100-185 323-416 (672)
89 COG1736 DPH2 Diphthamide synth 25.5 4E+02 0.0087 25.7 8.3 64 138-204 106-170 (347)
90 COG0855 Ppk Polyphosphate kina 25.5 1.6E+02 0.0035 30.8 5.9 85 100-192 336-434 (696)
91 KOG3349 Predicted glycosyltran 25.1 1.8E+02 0.0038 25.1 5.2 36 146-183 93-128 (170)
92 cd03466 Nitrogenase_NifN_2 Nit 25.1 5.3E+02 0.011 25.1 9.4 49 142-193 140-192 (429)
93 COG1063 Tdh Threonine dehydrog 24.9 3.2E+02 0.0068 25.7 7.6 99 81-192 170-271 (350)
94 KOG0024 Sorbitol dehydrogenase 24.8 1.9E+02 0.0041 27.9 5.9 31 81-113 171-201 (354)
95 PF01933 UPF0052: Uncharacteri 24.6 1.1E+02 0.0023 28.8 4.2 32 81-114 160-191 (300)
96 TIGR01826 CofD_related conserv 24.5 5E+02 0.011 24.5 8.7 29 82-114 152-180 (310)
97 PRK05479 ketol-acid reductoiso 24.2 5.5E+02 0.012 24.4 9.0 30 152-187 16-45 (330)
98 TIGR02668 moaA_archaeal probab 24.2 2.4E+02 0.0052 25.7 6.5 44 145-189 47-92 (302)
99 PF13353 Fer4_12: 4Fe-4S singl 23.7 1.4E+02 0.0031 23.4 4.4 43 140-183 38-84 (139)
100 PRK01415 hypothetical protein; 23.3 4.6E+02 0.0099 23.9 8.0 105 95-206 113-221 (247)
101 PF07966 A1_Propeptide: A1 Pro 23.3 27 0.00059 21.1 0.0 21 5-25 7-27 (29)
102 PF13090 PP_kinase_C: Polyphos 23.3 3.2E+02 0.007 26.4 7.2 59 101-160 3-70 (352)
103 PRK07239 bifunctional uroporph 23.2 4.4E+02 0.0096 24.9 8.3 30 173-202 192-221 (381)
104 PF02441 Flavoprotein: Flavopr 23.2 1.3E+02 0.0027 24.0 3.9 46 154-201 1-46 (129)
105 COG1154 Dxs Deoxyxylulose-5-ph 23.2 1.6E+02 0.0035 30.5 5.4 32 222-253 543-578 (627)
106 TIGR02666 moaA molybdenum cofa 23.1 2.8E+02 0.0061 25.7 6.8 51 139-190 45-97 (334)
107 PRK00421 murC UDP-N-acetylmura 22.9 7.1E+02 0.015 24.2 10.0 39 139-180 420-458 (461)
108 PRK13059 putative lipid kinase 22.5 4.1E+02 0.0088 24.3 7.7 53 147-205 50-104 (295)
109 PF13394 Fer4_14: 4Fe-4S singl 22.0 1.6E+02 0.0034 22.6 4.2 36 157-193 51-91 (119)
110 smart00481 POLIIIAc DNA polyme 21.8 2.3E+02 0.005 19.5 4.7 40 148-192 23-62 (67)
111 PRK11337 DNA-binding transcrip 21.7 6E+02 0.013 22.9 10.1 92 142-240 129-222 (292)
112 PRK11557 putative DNA-binding 21.5 5.9E+02 0.013 22.7 10.5 92 142-240 117-210 (278)
113 TIGR03278 methan_mark_10 putat 21.5 2.9E+02 0.0063 27.0 6.7 49 138-187 55-107 (404)
114 PRK13337 putative lipid kinase 21.5 3.9E+02 0.0084 24.5 7.3 50 150-205 54-105 (304)
115 COG1832 Predicted CoA-binding 21.3 2.1E+02 0.0045 24.1 4.8 39 145-185 8-46 (140)
116 PRK10076 pyruvate formate lyas 21.1 1.9E+02 0.0041 25.6 4.9 52 138-191 20-76 (213)
117 cd05013 SIS_RpiR RpiR-like pro 21.0 3.8E+02 0.0083 20.4 10.1 92 143-241 3-96 (139)
118 PRK09212 pyruvate dehydrogenas 20.9 3.2E+02 0.007 25.7 6.8 77 150-253 198-278 (327)
119 cd05014 SIS_Kpsf KpsF-like pro 20.8 3.4E+02 0.0074 20.8 6.0 26 81-108 1-26 (128)
120 PF00162 PGK: Phosphoglycerate 20.3 5.2E+02 0.011 25.2 8.1 96 141-236 35-143 (384)
121 PF13458 Peripla_BP_6: Peripla 20.2 2.6E+02 0.0056 25.1 5.8 61 141-202 120-187 (343)
122 cd01523 RHOD_Lact_B Member of 20.2 3.6E+02 0.0078 19.8 8.9 39 147-190 55-93 (100)
123 PRK09283 delta-aminolevulinic 20.2 4.2E+02 0.0091 25.3 7.2 91 140-250 228-321 (323)
124 PF03610 EIIA-man: PTS system 20.1 3.8E+02 0.0083 20.7 6.1 50 144-197 48-97 (116)
No 1
>PRK14994 SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional
Probab=100.00 E-value=3.4e-40 Score=303.94 Aligned_cols=194 Identities=45% Similarity=0.739 Sum_probs=181.5
Q ss_pred CCCCCeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhccCCCcEEecCCCCHHHHHHHHHHHHhCCCeE
Q 024054 77 GPLEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIV 156 (273)
Q Consensus 77 ~~~~g~l~iVGvGPGdpdlLTlrA~~~L~~ADvV~~~~~~~~~~ll~~~~~~~~~i~~~~~~~~~~~~~ii~~l~~G~~V 156 (273)
..++|+||+||+|||||++||+||+++|++||+|++++++.+..+++.+.++++++.++++++++.++.+++.+++|++|
T Consensus 8 ~~~~g~Ly~VgtgiGn~edITlRAl~~L~~aDvI~~edtr~t~~ll~~~~i~~~~~~~~~~~~~~~~~~i~~~l~~G~~V 87 (287)
T PRK14994 8 DNSQGQLYIVPTPIGNLADITQRALEVLQAVDLIAAEDTRHTGLLLQHFAINARLFALHDHNEQQKAETLLAKLQEGQNI 87 (287)
T ss_pred CCCCCeEEEEeCCCCChHHhhHHHHHHHHhCCEEEEeCCcchHHHHhhcCCCCEEEEccCCCHHHHHHHHHHHHHCCCeE
Confidence 45579999999999999999999999999999999999988878999998888888888888888899999999999999
Q ss_pred EEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCccEEEEEEeCCCCcchHHHHHhhhCCCCeEE
Q 024054 157 ALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQI 236 (273)
Q Consensus 157 v~LS~~GDP~iys~~~~l~~~l~~~gi~vevIPGISS~~aAaA~lG~pl~~~~~ig~lp~~~~~r~~~L~~l~~~~~tlV 236 (273)
+++||.|||++||++.++++.+++.|++|++||||||+++|++.+|+|.+.|.|.||+|.+...|.+.|+.+++...|+|
T Consensus 88 alvSdaGdP~I~dpg~~Lv~~~~~~gi~v~vIPGiSA~~aA~a~sG~~~~~f~f~Gflp~~~~~r~~~L~~l~~~~~t~V 167 (287)
T PRK14994 88 ALVSDAGTPLINDPGYHLVRTCREAGIRVVPLPGPCAAITALSAAGLPSDRFCYEGFLPAKSKGRRDALKALEAEPRTLI 167 (287)
T ss_pred EEEccCCCCceeCCHHHHHHHHHHCCCCEEEeCCHHHHHHHHHHcCCCCCcceEeEECCCCCchHHHHHHHHhcCCCeEE
Confidence 99999999999999999999999999999999999999999999999988999999999887777788999999999999
Q ss_pred EEeCcccHHHHHHHHhhhcCCCcEEEeEehhhhh
Q 024054 237 FYVPPHKLLQFLEETSLLFGYSRYIRYLKILFLF 270 (273)
Q Consensus 237 l~~~~~~l~~i~~~L~e~~~~d~~v~v~~~l~~~ 270 (273)
||++++++.+.++.+.+.+++++++++|++++--
T Consensus 168 ~yesp~R~~~~l~~l~~~~g~~~~v~i~relTk~ 201 (287)
T PRK14994 168 FYESTHRLLDSLEDIVAVLGESRYVVLARELTKT 201 (287)
T ss_pred EEEEChhHHHHHHHHHHhcCCCCeEEEEeeccCC
Confidence 9999999999999999988889999999999853
No 2
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=100.00 E-value=6.3e-37 Score=277.06 Aligned_cols=192 Identities=51% Similarity=0.769 Sum_probs=185.2
Q ss_pred CCCeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhccCCCcEEecCCCCHHHHHHHHHHHHhCCCeEEE
Q 024054 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVAL 158 (273)
Q Consensus 79 ~~g~l~iVGvGPGdpdlLTlrA~~~L~~ADvV~~~~~~~~~~ll~~~~~~~~~i~~~~~~~~~~~~~ii~~l~~G~~Vv~ 158 (273)
++|++|+|+++.||.++||.||+++|+++|+|+++|+|++..++++++++.+.+.++++|+++....+++.+++|++|++
T Consensus 3 ~~g~LYlV~TPIGNl~Dit~Ral~~L~~~D~iaaEDTR~t~~LL~~~~I~~~~is~h~hne~~~~~~li~~l~~g~~val 82 (275)
T COG0313 3 MMGTLYLVPTPIGNLADITLRALEVLKEVDVIAAEDTRVTRKLLSHLGIKTPLISYHEHNEKEKLPKLIPLLKKGKSVAL 82 (275)
T ss_pred CCceEEEeCCCCCChHhcCHHHHHHHhhCCEEEEeccHHHHHHHHHhCCCCceecccCCcHHHHHHHHHHHHhcCCeEEE
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCccEEEEEEeCCCCcchHHHHHhhhCCCCeEEEE
Q 024054 159 ISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFY 238 (273)
Q Consensus 159 LS~~GDP~iys~~~~l~~~l~~~gi~vevIPGISS~~aAaA~lG~pl~~~~~ig~lp~~~~~r~~~L~~l~~~~~tlVl~ 238 (273)
+||+|.|+|.|||+.|++.+++.||+|+++||+||+.+|.+.+|+|.+.|.|.||+|.+..+|.+.++++++...|+|||
T Consensus 83 VSDAG~P~ISDPG~~LV~~a~~~gi~V~~lPG~sA~~tAL~~SGl~~~~F~F~GFLP~k~~~R~~~l~~l~~~~~t~Ify 162 (275)
T COG0313 83 VSDAGTPLISDPGYELVRAAREAGIRVVPLPGPSALITALSASGLPSQRFLFEGFLPRKSKERRKRLEALANEPRTLIFY 162 (275)
T ss_pred EecCCCCcccCccHHHHHHHHHcCCcEEecCCccHHHHHHHHcCCCCCCeeEeccCCCCccHHHHHHHHHHhcCCeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999888888999999888999999
Q ss_pred eCcccHHHHHHHHhhhcCCCcEEEeEehhhhh
Q 024054 239 VPPHKLLQFLEETSLLFGYSRYIRYLKILFLF 270 (273)
Q Consensus 239 ~~~~~l~~i~~~L~e~~~~d~~v~v~~~l~~~ 270 (273)
++||++.+.++.+.+.++.++++++||+|+-.
T Consensus 163 EsphRl~~tL~d~~~~~g~~r~v~vaRELTK~ 194 (275)
T COG0313 163 ESPHRLLATLEDIVEVLGSDREVVVARELTKL 194 (275)
T ss_pred ecchhHHHHHHHHHHHcCCCceEEEEeecccc
Confidence 99999999999999999989999999999753
No 3
>COG0007 CysG Uroporphyrinogen-III methylase [Coenzyme metabolism]
Probab=100.00 E-value=1.9e-35 Score=264.71 Aligned_cols=189 Identities=22% Similarity=0.227 Sum_probs=167.6
Q ss_pred CCCeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhccCCCcEEecC------CCCHHHHHHHHHHHHhC
Q 024054 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYH------KFNESQREQTVLNRLKQ 152 (273)
Q Consensus 79 ~~g~l~iVGvGPGdpdlLTlrA~~~L~~ADvV~~~~~~~~~~ll~~~~~~~~~i~~~------~~~~~~~~~~ii~~l~~ 152 (273)
+.|++|+||.|||||++||+||.++|++||+|+| |..+++.+++.+..+++++... ...++++.+.+++.+++
T Consensus 2 ~~GkV~lVGAGPGdp~LLTlka~~~L~~ADvvly-D~LV~~~il~~~~~~a~~i~vGkr~g~~~~~q~eIn~~lv~~a~~ 80 (244)
T COG0007 2 KPGKVYLVGAGPGDPGLLTLRALRALQEADVVLY-DRLVPEEVLALARRDAERIYVGKRPGGHSKPQDEINALLVELARE 80 (244)
T ss_pred CcceEEEEecCCCChhhhhHHHHHHHhhCCEEEE-cCcCCHHHHHhhccCCEEEEecCcCCCCCCCHHHHHHHHHHHHhc
Confidence 4699999999999999999999999999999999 5789999999888777776542 34578889999999999
Q ss_pred CCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCc------cEEEEEEeCCCCcchHHHHH
Q 024054 153 GEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATD------EFTFVGFLPKHARSRTERLM 226 (273)
Q Consensus 153 G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~vevIPGISS~~aAaA~lG~pl~------~~~~ig~lp~~~~~r~~~L~ 226 (273)
|+.|++| +.|||++|+++.++++.+.+.||++||+|||||..++++..|+|++ .|+|+ +.|..+..-+|.
T Consensus 81 G~~VVRL-KgGDP~iFGRggEE~~~l~~~gI~~eVVPGiTSa~a~~a~agIPlT~R~~a~s~~~v---Tgh~~~~~~~w~ 156 (244)
T COG0007 81 GKRVVRL-KGGDPYIFGRGGEEIEALAEAGIEFEVVPGITSAIAAPAYAGIPLTHRGVASSFTFV---TGHDRDGKLDWE 156 (244)
T ss_pred CCeEEEe-cCCCCCeecCcHHHHHHHHHcCCceEEeCccchHHHHHHHcCCceeecCccceEEEE---eCcCCCCCcChH
Confidence 9999999 8999999999999999999999999999999999999999999996 34554 777543234688
Q ss_pred hhhCCCCeEEEEeCcccHHHHHHHHhh-hcCCCcEEEeEehhhhhhc
Q 024054 227 LSANEVKTQIFYVPPHKLLQFLEETSL-LFGYSRYIRYLKILFLFCQ 272 (273)
Q Consensus 227 ~l~~~~~tlVl~~~~~~l~~i~~~L~e-~~~~d~~v~v~~~l~~~~~ 272 (273)
.+++..+|+||||+.+++.++.+.|.+ ++++++||++.++-+...|
T Consensus 157 ~la~~~~TlVi~Mg~~~l~~i~~~Li~~G~~~~tpvAvi~~gt~~~Q 203 (244)
T COG0007 157 ALARSVGTLVILMGASRLAEIARELIAHGRSPDTPVAVIENGTTPDQ 203 (244)
T ss_pred HhcccCCCEEEEeCcchHHHHHHHHHHcCCCCCCCEEEEEcCCCcce
Confidence 999899999999999999999999998 7899999999998776554
No 4
>PRK15473 cbiF cobalt-precorrin-4 C(11)-methyltransferase; Provisional
Probab=100.00 E-value=3.7e-35 Score=266.44 Aligned_cols=187 Identities=17% Similarity=0.211 Sum_probs=159.5
Q ss_pred CCeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhccCCCcEEecCCCCHHHHHHHHHHHHhCCCeEEEE
Q 024054 80 EPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALI 159 (273)
Q Consensus 80 ~g~l~iVGvGPGdpdlLTlrA~~~L~~ADvV~~~~~~~~~~ll~~~~~~~~~i~~~~~~~~~~~~~ii~~l~~G~~Vv~L 159 (273)
+|+||+||+||||||+||+||+++|++||+|+++++...+.+++.+..+++.+.....+.++..+.+.+.+++|++|+++
T Consensus 7 ~~~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~g~~Vv~L 86 (257)
T PRK15473 7 PRCVWFVGAGPGDKELITLKGYRLLQQAQVVIYAGSLINTELLDYCPAQAECHDSAELHLEQIIDLMEAGVKAGKTVVRL 86 (257)
T ss_pred CCEEEEEEeCCCChHHhhHHHHHHHHhCCEEEEecccCCHHHHhhcCCCCEEEecCCCCHHHHHHHHHHHHHCCCeEEEE
Confidence 48999999999999999999999999999999987666677787776655544333345677788888888899999999
Q ss_pred ccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCc------cEEEEEEeCCCCcch---HHHHHhhhC
Q 024054 160 SDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATD------EFTFVGFLPKHARSR---TERLMLSAN 230 (273)
Q Consensus 160 S~~GDP~iys~~~~l~~~l~~~gi~vevIPGISS~~aAaA~lG~pl~------~~~~ig~lp~~~~~r---~~~L~~l~~ 230 (273)
.+|||++||++.++++.+.+.+++++++|||||+++|+|++|+||+ ++.++ +.|++.. .+.+..+++
T Consensus 87 -~sGDP~~yg~~~~l~~~l~~~~i~veiiPGISS~~aaaA~lg~pl~~~~~~~~~~v~---s~hG~~~~~~~~~l~~~~~ 162 (257)
T PRK15473 87 -QTGDVSLYGSIREQGEELTKRGIDFQVVPGVSSFLGAAAELGVEYTVPEVSQSLIIT---RMEGRTPVPAREQLESFAS 162 (257)
T ss_pred -eCcCchhhhhHHHHHHHHHHCCCCEEEeCChhHHHHHHHHcCCCcccccccccEEEE---eecCCCCCCchhhHHHHhc
Confidence 5999999999999999999999999999999999999999999996 55554 5555421 246888888
Q ss_pred CCCeEEEEeCcccHHHHHHHHhh-hcCCCcEEEeEehhhhh
Q 024054 231 EVKTQIFYVPPHKLLQFLEETSL-LFGYSRYIRYLKILFLF 270 (273)
Q Consensus 231 ~~~tlVl~~~~~~l~~i~~~L~e-~~~~d~~v~v~~~l~~~ 270 (273)
.+.++|||++.++++++++.|.+ ++++++++++++|++.-
T Consensus 163 ~~~t~vi~~~~~~~~~i~~~L~~~g~~~~~~v~v~e~l~~~ 203 (257)
T PRK15473 163 HQTSMAIFLSVQRIHRVAERLIAGGYPATTPVAVIYKATWP 203 (257)
T ss_pred CCCeEEEECCchhHHHHHHHHHHcCCCCCCeEEEEEECCCC
Confidence 88899999999999999999998 68889999999999864
No 5
>PRK06136 uroporphyrin-III C-methyltransferase; Reviewed
Probab=100.00 E-value=6.1e-35 Score=262.50 Aligned_cols=186 Identities=22% Similarity=0.286 Sum_probs=154.8
Q ss_pred CCCeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhccCCCcEEecCC------CCHHHHHHHHHHHHhC
Q 024054 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHK------FNESQREQTVLNRLKQ 152 (273)
Q Consensus 79 ~~g~l~iVGvGPGdpdlLTlrA~~~L~~ADvV~~~~~~~~~~ll~~~~~~~~~i~~~~------~~~~~~~~~ii~~l~~ 152 (273)
|+|+||+||+|||||++||+||+++|++||+|++++ +.++++++.+..+++.+...+ ...++..+.+.+.+.+
T Consensus 1 ~~g~l~iVGvGpGdp~~lT~~A~~~L~~advI~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 79 (249)
T PRK06136 1 MMGKVYLVGAGPGDPDLITLKGVRLLEQADVVLYDD-LVSPEILAYAKPDAELIYVGKRAGRHSTKQEEINRLLVDYARK 79 (249)
T ss_pred CCcEEEEEEECCCChHHHHHHHHHHHhcCCEEEEcC-CCCHHHHhhCCCCCEEEeCCCcCCCCCcCHHHHHHHHHHHHHC
Confidence 679999999999999999999999999999999975 566777777665544443221 2234566777788889
Q ss_pred CCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCc------cEEEEEEeCCCCcch----H
Q 024054 153 GEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATD------EFTFVGFLPKHARSR----T 222 (273)
Q Consensus 153 G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~vevIPGISS~~aAaA~lG~pl~------~~~~ig~lp~~~~~r----~ 222 (273)
|++|+++ ++|||++||++.++++++.+.|+++++||||||+++|+|++|+||+ ++.++ +.|++.. .
T Consensus 80 g~~V~~l-~~GDP~~ys~~~~l~~~l~~~~~~veviPGISS~~aaaa~~g~~l~~~~~~~~~~~~---~~~~~~~~~~~~ 155 (249)
T PRK06136 80 GKVVVRL-KGGDPFVFGRGGEELEALEAAGIPYEVVPGITAAIAAAAYAGIPLTHRGVARSVTFV---TGHEAAGKLEPE 155 (249)
T ss_pred CCeEEEE-eCCCchhhhcHHHHHHHHHHCCCCEEEEcCccHHHHHHHHcCCCcccCCcceeEEEE---ecccCCCccccc
Confidence 9999999 6999999999999999999889999999999999999999999997 34444 6665421 1
Q ss_pred HHHHhhhCCCCeEEEEeCcccHHHHHHHHhh-hcCCCcEEEeEehhhh
Q 024054 223 ERLMLSANEVKTQIFYVPPHKLLQFLEETSL-LFGYSRYIRYLKILFL 269 (273)
Q Consensus 223 ~~L~~l~~~~~tlVl~~~~~~l~~i~~~L~e-~~~~d~~v~v~~~l~~ 269 (273)
..++.+++++.|+|||++.+++.++++.|.+ ++++++++++++++|.
T Consensus 156 ~~~~~l~~~~~~~vl~~~~~~~~~i~~~L~~~g~~~~~~~~v~~~lg~ 203 (249)
T PRK06136 156 VNWSALADGADTLVIYMGVRNLPYIAAQLLAAGRAPDTPVAIIENGTT 203 (249)
T ss_pred cCHHHHhCCCCeEEEECCHHHHHHHHHHHHHcCCCCCCeEEEEEeCCC
Confidence 2356777888999999999999999999988 5878999999999985
No 6
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=100.00 E-value=4.4e-35 Score=258.23 Aligned_cols=188 Identities=19% Similarity=0.248 Sum_probs=167.0
Q ss_pred CCeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhccCCCcEEecCCCCHHHHHHHHHHHHhCCCeEEEE
Q 024054 80 EPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALI 159 (273)
Q Consensus 80 ~g~l~iVGvGPGdpdlLTlrA~~~L~~ADvV~~~~~~~~~~ll~~~~~~~~~i~~~~~~~~~~~~~ii~~l~~G~~Vv~L 159 (273)
..++||||.||||||+||+|++++|++||+|+|+++.+++++++...++++++.....+.+++.+.++++.++||+|++|
T Consensus 2 ~~~VyFIGAGPGdpdLiTvkg~~ll~~advviYAGSLV~~elL~~~~~~aei~nSa~~tLeeIi~~m~~a~~~Gk~VvRL 81 (254)
T COG2875 2 AMKVYFIGAGPGDPDLITVKGQRLLEKADVVIYAGSLVPPELLEYCRPDAEIVNSASLTLEEIIDLMVDAVREGKDVVRL 81 (254)
T ss_pred CceEEEEccCCCCcceeeehHHHHHhhCCEEEECCCcCCHHHHhhcCCCCEEEecCcCCHHHHHHHHHHHHHcCCeEEEe
Confidence 46899999999999999999999999999999999999999999999999999887788999999999999999999999
Q ss_pred ccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCc----cEEEE-EEeCCCCcc-hHHHHHhhhCCCC
Q 024054 160 SDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATD----EFTFV-GFLPKHARS-RTERLMLSANEVK 233 (273)
Q Consensus 160 S~~GDP~iys~~~~l~~~l~~~gi~vevIPGISS~~aAaA~lG~pl~----~~~~i-g~lp~~~~~-r~~~L~~l~~~~~ 233 (273)
.+|||.+||...+.+++|.+.||++|++||+|||++|||.+|..++ ..+++ .-.+..... ..+.++++++++.
T Consensus 82 -hSGDpsiYgA~~EQm~~L~~~gI~yevvPGVss~~AAAA~L~~ELT~P~vsQtvilTR~sgrt~vpe~e~l~~la~~~a 160 (254)
T COG2875 82 -HSGDPSIYGALAEQMRELEALGIPYEVVPGVSSFAAAAAALGIELTVPGVSQTVILTRPSGRTPVPEKESLAALAKHGA 160 (254)
T ss_pred -ecCChhHHHHHHHHHHHHHHcCCCeEEeCCchHHHHHHHHhCceeecCCcceeEEEEccccCCCCCchhHHHHHHhcCc
Confidence 6999999999999999999999999999999999999999999886 22333 222222111 1467899999999
Q ss_pred eEEEEeCcccHHHHHHHHhh-hcCCCcEEEeEehhh
Q 024054 234 TQIFYVPPHKLLQFLEETSL-LFGYSRYIRYLKILF 268 (273)
Q Consensus 234 tlVl~~~~~~l~~i~~~L~e-~~~~d~~v~v~~~l~ 268 (273)
|++||.+.+.++++.++|.+ ++++|+||+++-.-+
T Consensus 161 Tm~I~L~v~~I~~vv~~L~~g~y~~dtPVaVV~rAs 196 (254)
T COG2875 161 TMVIFLGVHAIDKVVEELLEGGYPPDTPVAVVYRAS 196 (254)
T ss_pred eeEeeehhhHHHHHHHHHhcCCCCCCCCEEEEEecC
Confidence 99999999999999999999 899999999986543
No 7
>TIGR01465 cobM_cbiF precorrin-4 C11-methyltransferase. This model represents precorrin-4 C11-methyltransferase, one of two methyltransferases commonly referred to as precorrin-3 methylase (the other is precorrin-3B C17-methyltransferase, EC 2.1.1.131). This enzyme participates in the pathway toward the biosynthesis of cobalamin and related products.
Probab=100.00 E-value=1e-34 Score=257.81 Aligned_cols=187 Identities=20% Similarity=0.239 Sum_probs=155.9
Q ss_pred EEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhccCCCcEEecCCCCHHHHHHHHHHHHhCCCeEEEEccC
Q 024054 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDA 162 (273)
Q Consensus 83 l~iVGvGPGdpdlLTlrA~~~L~~ADvV~~~~~~~~~~ll~~~~~~~~~i~~~~~~~~~~~~~ii~~l~~G~~Vv~LS~~ 162 (273)
||+||+|||||++||+||+++|++||+|++++++.+..+++.+.++.+++.....++++..+.+.+.+++|++|+++ .+
T Consensus 1 v~iVG~GpG~~~~lT~~a~~~l~~advV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~V~~L-~~ 79 (229)
T TIGR01465 1 VYFIGAGPGDPDLITVKGRKLLESADVILYAGSLVPPELLAWCRPGAEVVNSAGMSLEEIVDIMSDAHREGKLVVRL-HT 79 (229)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHHhCCEEEEeCCCCCHHHHhhCCCCCEEEEcCCCCHHHHHHHHHHHHHCCCeEEEE-eC
Confidence 69999999999999999999999999999987767777777776666655444456677888888888899999999 59
Q ss_pred CCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCccE---EEEEEeCCCCcc---hHHHHHhhhCCCCeEE
Q 024054 163 GTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEF---TFVGFLPKHARS---RTERLMLSANEVKTQI 236 (273)
Q Consensus 163 GDP~iys~~~~l~~~l~~~gi~vevIPGISS~~aAaA~lG~pl~~~---~~ig~lp~~~~~---r~~~L~~l~~~~~tlV 236 (273)
|||++||++.++++.+.+.|++++++|||||+++|+|++|+||... ..+-+.+.|++. ..+.+..+++.+.+++
T Consensus 80 GDP~~~~~~~~l~~~~~~~g~~veviPGiSS~~aa~a~~g~~l~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~v 159 (229)
T TIGR01465 80 GDPSIYGAIAEQMQLLEALGIPYEVVPGVSSFFAAAAALGAELTVPEVSQTVILTRAEGRTPMPEGEKLADLAKHGATMA 159 (229)
T ss_pred cCccccccHHHHHHHHHHCCCCEEEECChhHHHHHHHHcCCCccccCCccEEEEEeccCCCCCCChHHHHHHhcCCCeEE
Confidence 9999999999999999999999999999999999999999999521 111123455432 1345778888888999
Q ss_pred EEeCcccHHHHHHHHhh-hcCCCcEEEeEehhhhh
Q 024054 237 FYVPPHKLLQFLEETSL-LFGYSRYIRYLKILFLF 270 (273)
Q Consensus 237 l~~~~~~l~~i~~~L~e-~~~~d~~v~v~~~l~~~ 270 (273)
+|++++++.++.+.|.+ ++++++++++++|++.=
T Consensus 160 i~~~~~~~~~i~~~L~~~g~~~~~~v~v~~~l~~~ 194 (229)
T TIGR01465 160 IFLSAHILDKVVKELIEGGYSEDTPVAVVYRATWP 194 (229)
T ss_pred EECcHHHHHHHHHHHHHcCcCCCCcEEEEEeCCCC
Confidence 99999999999999998 58889999999999863
No 8
>PLN02625 uroporphyrin-III C-methyltransferase
Probab=100.00 E-value=6e-34 Score=259.32 Aligned_cols=188 Identities=22% Similarity=0.248 Sum_probs=156.8
Q ss_pred CCCCCeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhccCCCcEEec------CCCCHHHHHHHHHHHH
Q 024054 77 GPLEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSY------HKFNESQREQTVLNRL 150 (273)
Q Consensus 77 ~~~~g~l~iVGvGPGdpdlLTlrA~~~L~~ADvV~~~~~~~~~~ll~~~~~~~~~i~~------~~~~~~~~~~~ii~~l 150 (273)
..++|+||+||+|||||++||++|+++|++||+|+++. +.++++++.+..+++.+.+ .....++..+.+.+.+
T Consensus 11 ~~~~g~l~vVG~GpGdp~~LTl~a~~~l~~ADvI~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 89 (263)
T PLN02625 11 LEGPGNVFLVGTGPGDPDLLTLKALRLLQTADVVLYDR-LVSPDILDLVPPGAELLYVGKRGGYHSRTQEEIHELLLSFA 89 (263)
T ss_pred CCCCCEEEEEEeCCCChHHhHHHHHHHHhcCCEEEEeC-cCCHHHHHhcCCCCEEEecCCcCCccccCHHHHHHHHHHHH
Confidence 35679999999999999999999999999999999975 4667788877655544422 1223456667777888
Q ss_pred hCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCcc------EEEEEEeCCCCcch---
Q 024054 151 KQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDE------FTFVGFLPKHARSR--- 221 (273)
Q Consensus 151 ~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~vevIPGISS~~aAaA~lG~pl~~------~~~ig~lp~~~~~r--- 221 (273)
.+|++|+++ ++|||++||++.++++.+.+.|++++++|||||+++|+|++|+||++ +.++ |.|++..
T Consensus 90 ~~g~~Vvvl-~~GDP~~ys~~~~l~~~l~~~~~~veiiPGISS~~aaaA~lg~pl~~~~~~~~~~i~---s~h~~~~~~~ 165 (263)
T PLN02625 90 EAGKTVVRL-KGGDPLVFGRGGEEMDALRKNGIPVTVVPGITAAIGAPAELGIPLTHRGVATSVRFL---TGHDREGGTD 165 (263)
T ss_pred HCCCeEEEE-cCCCchhhhhHHHHHHHHHHCCCCEEEECCccHHHHHHHHcCCCcccCCccceEEEE---ecccCCCccc
Confidence 889999999 69999999999999999999999999999999999999999999973 4444 7776531
Q ss_pred -HHHHHhhhCCCCeEEEEeCcccHHHHHHHHhh-hcCCCcEEEeEehhhh
Q 024054 222 -TERLMLSANEVKTQIFYVPPHKLLQFLEETSL-LFGYSRYIRYLKILFL 269 (273)
Q Consensus 222 -~~~L~~l~~~~~tlVl~~~~~~l~~i~~~L~e-~~~~d~~v~v~~~l~~ 269 (273)
.+.+..+.+.+.|+|||++.+++.++.+.|.+ +++++++++++++++.
T Consensus 166 ~~~~~~~~~~~~~t~vl~~~~~~~~~i~~~L~~~g~~~~~~v~v~e~l~~ 215 (263)
T PLN02625 166 PLDVAEAAADPDTTLVVYMGLGTLPSLAEKLIAAGLPPDTPAAAVERGTT 215 (263)
T ss_pred chhhHHHHhCCCCeEEEECchhhHHHHHHHHHHcCCCCCCeEEEEEECCC
Confidence 23466667778899999999999999999988 6778999999999986
No 9
>TIGR01469 cobA_cysG_Cterm uroporphyrin-III C-methyltransferase. This model represents enzymes, or enzyme domains, with uroporphyrin-III C-methyltransferase activity. This enzyme catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). Cobalamin contains cobalt while siroheme contains iron. Siroheme is a cofactor for nitrite and sulfite reductases and therefore plays a role in cysteine biosynthesis; many members of this family are CysG, siroheme synthase, with an additional N-terminal domain and with additional oxidation and iron insertion activities.
Probab=100.00 E-value=6e-34 Score=253.73 Aligned_cols=184 Identities=23% Similarity=0.304 Sum_probs=153.4
Q ss_pred eEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhccCCCcEEec------CCCCHHHHHHHHHHHHhCCCe
Q 024054 82 GLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSY------HKFNESQREQTVLNRLKQGEI 155 (273)
Q Consensus 82 ~l~iVGvGPGdpdlLTlrA~~~L~~ADvV~~~~~~~~~~ll~~~~~~~~~i~~------~~~~~~~~~~~ii~~l~~G~~ 155 (273)
+||+||+|||||++||+||+++|++||+|+++ .+.++++++.+..+.+.+.. .....++..+.+.+.+++|++
T Consensus 1 ~i~iVG~GpG~~~~lT~~a~~~l~~advI~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~ 79 (236)
T TIGR01469 1 KVYLVGAGPGDPELLTLKALRLLQEADVVLYD-ALVSPEILAYAPPQAELIDVGKRPGCHSKKQEEINRLLVELAREGKK 79 (236)
T ss_pred CEEEEecCCCChHHhHHHHHHHHHhCCEEEEe-CCCCHHHHhhCCCCCEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCCe
Confidence 58999999999999999999999999999995 56677888877655554432 112345566667788889999
Q ss_pred EEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCc------cEEEEEEeCCCCcchH---HHHH
Q 024054 156 VALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATD------EFTFVGFLPKHARSRT---ERLM 226 (273)
Q Consensus 156 Vv~LS~~GDP~iys~~~~l~~~l~~~gi~vevIPGISS~~aAaA~lG~pl~------~~~~ig~lp~~~~~r~---~~L~ 226 (273)
|+++ ++|||++||++.++++++.+.+++++++|||||+++|+|++|+||+ ++.++ +.|+++.. ..++
T Consensus 80 V~~l-~~GDP~~~~~~~~l~~~~~~~~~~v~viPGiSs~~~a~a~~g~~l~~~~~~~~~~i~---~~~~~~~~~~~~~~~ 155 (236)
T TIGR01469 80 VVRL-KGGDPFVFGRGGEEAEALAEAGIPFEVVPGVTSAIAAAAYAGIPLTHRGVASSVTFV---TGHEADDKALEVDWE 155 (236)
T ss_pred EEEE-eCcCcccccCHHHHHHHHHHCCCCEEEECCccHHHHHHHHcCCCcccCCCcceEEEE---EcccCCCcccccCHH
Confidence 9999 7999999999999999999889999999999999999999999998 45555 66654321 1378
Q ss_pred hhhCCCCeEEEEeCcccHHHHHHHHhh-hcCCCcEEEeEehhhhh
Q 024054 227 LSANEVKTQIFYVPPHKLLQFLEETSL-LFGYSRYIRYLKILFLF 270 (273)
Q Consensus 227 ~l~~~~~tlVl~~~~~~l~~i~~~L~e-~~~~d~~v~v~~~l~~~ 270 (273)
.+++...|+|+|++.+++.++++.|.+ ++++++++++++++|.=
T Consensus 156 ~~~~~~~~~vl~~~~~~~~~i~~~L~~~g~~~~~~~~v~~~lg~~ 200 (236)
T TIGR01469 156 ALAKGAGTLVIYMGVRNLPEIAKELIEHGRSPDTPVAVVEWATTP 200 (236)
T ss_pred HHhcCCCeEEEECCHHHHHHHHHHHHHcCCCCCCcEEEEEECCCC
Confidence 888888899999999999999999988 57789999999999863
No 10
>PRK05765 precorrin-3B C17-methyltransferase; Provisional
Probab=100.00 E-value=3.2e-33 Score=252.47 Aligned_cols=183 Identities=22% Similarity=0.294 Sum_probs=147.6
Q ss_pred CeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhccCCCcEEecCCCCHHHHHHHHHHHHhCCCeEEEEc
Q 024054 81 PGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALIS 160 (273)
Q Consensus 81 g~l~iVGvGPGdpdlLTlrA~~~L~~ADvV~~~~~~~~~~ll~~~~~~~~~i~~~~~~~~~~~~~ii~~l~~G~~Vv~LS 160 (273)
|+||+||+|||||++||+||+++|++||+|++++++ .++++.+..+++++..++.++....+.+++.+++|++|+++
T Consensus 2 g~v~iVG~GpGdp~~lT~ra~~~L~~AdvV~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~Vv~l- 78 (246)
T PRK05765 2 GKLYIVGIGPGSKEQRTIKAQEAIEKSNVIIGYNTY--LRLISDLLDGKEVIGARMKEEIFRANTAIEKALEGNIVALV- 78 (246)
T ss_pred CEEEEEEcCCCChHHhhHHHHHHHHhCCEEEEccCH--HHHHHHhcCCCEEecCCchHHHHHHHHHHHHHHCCCcEEEE-
Confidence 789999999999999999999999999999998654 35565555556655444333333345677888899999999
Q ss_pred cCCCCCCCchHHHHHHHhhhCCC--CEEEEccchHHHHHHHhCCCCCc-cEEEEEEeCCCC-----cchHHHHHhhhCCC
Q 024054 161 DAGTPGISDPGTELAKLCVDEKI--PVVPIPGASAFVAALSASGLATD-EFTFVGFLPKHA-----RSRTERLMLSANEV 232 (273)
Q Consensus 161 ~~GDP~iys~~~~l~~~l~~~gi--~vevIPGISS~~aAaA~lG~pl~-~~~~ig~lp~~~-----~~r~~~L~~l~~~~ 232 (273)
..|||++||++.++++.+.++|+ +++++|||||+++|+|++|+||+ ++.+++ .|. .+...+|..+++..
T Consensus 79 ~~GDP~i~~~~~~~~~~l~~~~~~~~veviPGiSs~~aa~a~~g~pl~~~~~~~s---~~~~~~p~~~~~~~l~~~~~~~ 155 (246)
T PRK05765 79 SSGDPQVYGMAGLVFELISRRKLDVDVEVIPGVTAALAAAARLGSPLSLDFVVIS---LSDLLIPREEILHRVTKAAEAD 155 (246)
T ss_pred eCCCchhhhhHHHHHHHHHhcCCCCCEEEeCCHHHHHHHHHHhCCCCcCCcEEEE---cCCCCCChHHHHHHHHHHhcCC
Confidence 58999999999999999988876 79999999999999999999996 888773 332 11123566777888
Q ss_pred CeEEEEeC--cccHHHHHHHHhhhcCCCcEEEeEehhhh
Q 024054 233 KTQIFYVP--PHKLLQFLEETSLLFGYSRYIRYLKILFL 269 (273)
Q Consensus 233 ~tlVl~~~--~~~l~~i~~~L~e~~~~d~~v~v~~~l~~ 269 (273)
.++++|++ .+++.++.+.|.+++++++||+++++++.
T Consensus 156 ~~ivly~~~~~~~~~~~~~~l~~~~~~~~pv~vv~~~t~ 194 (246)
T PRK05765 156 FVIVFYNPINENLLIEVMDIVSKHRKPNTPVGLVKSAYR 194 (246)
T ss_pred eEEEEEcccchhHHHHHHHHHHhcCCCCCEEEEEEeCCC
Confidence 99999997 45677777777778899999999999885
No 11
>PRK15478 cbiH cobalt-precorrin-3B C(17)-methyltransferase; Provisional
Probab=100.00 E-value=5.5e-33 Score=250.42 Aligned_cols=186 Identities=20% Similarity=0.234 Sum_probs=150.5
Q ss_pred eEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhccCCCcEEecCCCCHHHHHHHHHHHHhCCCeEEEEcc
Q 024054 82 GLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISD 161 (273)
Q Consensus 82 ~l~iVGvGPGdpdlLTlrA~~~L~~ADvV~~~~~~~~~~ll~~~~~~~~~i~~~~~~~~~~~~~ii~~l~~G~~Vv~LS~ 161 (273)
+||+||+||||||+||+||+++|++||+|++++++ .++++.+..+++++..++.++.+..+.+++.+++|++|+++ .
T Consensus 1 ml~~VG~GPGdp~lLTlrA~~~L~~ADvVv~~~~~--~~lv~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~g~~Vv~L-~ 77 (241)
T PRK15478 1 MLSVIGIGPGSQAMMTMEAIEALQAAEIVVGYKTY--THLVKAFTGDKQVIKTGMCKEIERCQAAIELAQAGHNVALI-S 77 (241)
T ss_pred CEEEEEcCCCChHHHHHHHHHHHHcCCEEEEcCcH--HHHHHhhcCCCEEEECCCchHHHHHHHHHHHHHCCCeEEEE-E
Confidence 48999999999999999999999999999998653 46777776677777666555556667778888999999999 5
Q ss_pred CCCCCCCchHHHHHHHhhhCC--CCEEEEccchHHHHHHHhCCCCC-ccEEEEEEe--CCCCcchHHHHHhhhCCCCeEE
Q 024054 162 AGTPGISDPGTELAKLCVDEK--IPVVPIPGASAFVAALSASGLAT-DEFTFVGFL--PKHARSRTERLMLSANEVKTQI 236 (273)
Q Consensus 162 ~GDP~iys~~~~l~~~l~~~g--i~vevIPGISS~~aAaA~lG~pl-~~~~~ig~l--p~~~~~r~~~L~~l~~~~~tlV 236 (273)
+|||++|+.+.++.+.+.+++ ++++++|||||+++|+|++|+|| +++.+.++. -..+...++.+..+++.+.|++
T Consensus 78 sGDP~~~g~~~~~~~~l~~~~~~~~veviPGiSs~~aaaa~~g~plt~~~~~~s~~~~~~~~~~~~~~~~a~~~~~~tlv 157 (241)
T PRK15478 78 SGDAGIYGMAGLVLELVSKQKLDVEVRLIPGMTASIAAASLLGAPLMHDFCHISLSDLLTPWPVIEKRIVAAGEADFVIC 157 (241)
T ss_pred CCCCCcchhHHHHHHHHHhcCCCCcEEEeCCHHHHHHHHHHhCCCcccCcceeecccCCCCcHHHHHhHHHHhcCCeEEE
Confidence 999999999999999987765 56899999999999999999998 577666441 1223223346777788889999
Q ss_pred EEeCccc-----HHHHHHHHhhhcCCCcEEEeEehhhhh
Q 024054 237 FYVPPHK-----LLQFLEETSLLFGYSRYIRYLKILFLF 270 (273)
Q Consensus 237 l~~~~~~-----l~~i~~~L~e~~~~d~~v~v~~~l~~~ 270 (273)
|||+.++ +.++.+.+.+++++++||+++++.+.-
T Consensus 158 lym~~~~~~~~~l~~~~~ll~~g~~~~tPvaiv~~~t~~ 196 (241)
T PRK15478 158 FYNPRSRGREGHLARAFDLLAASKSAQTPVGVVKSAGRK 196 (241)
T ss_pred EECCcccccHHHHHHHHHHHHccCCCCCEEEEEEeCCCC
Confidence 9999976 455555666688999999999998753
No 12
>TIGR00096 probable S-adenosylmethionine-dependent methyltransferase, YraL family. No member of this family is characterized, but Pfam model pfam00590 (tetrapyrrole methylase) demonstrates homology between this family and its other members, which include several methylases for the tetrapyrrole class of compound, as well as the enzyme diphthine synthase.
Probab=100.00 E-value=1.4e-32 Score=251.78 Aligned_cols=187 Identities=42% Similarity=0.541 Sum_probs=176.9
Q ss_pred eEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhccCCCcEEecCCCCHHHHHHHHHHHHhCCCeEEEEcc
Q 024054 82 GLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISD 161 (273)
Q Consensus 82 ~l~iVGvGPGdpdlLTlrA~~~L~~ADvV~~~~~~~~~~ll~~~~~~~~~i~~~~~~~~~~~~~ii~~l~~G~~Vv~LS~ 161 (273)
++|+|+++.||.++||+||+++|++||+|+++|+|++..++..+++.++.+.++.+++++..+.+++.+.+|++|+++||
T Consensus 1 mLyvv~TPIGNl~Dit~Ral~~L~~~d~i~~EDTR~t~kLL~~~~I~~~~~~~~~hn~~~~~~~l~~~l~~g~~valvSD 80 (276)
T TIGR00096 1 LLYVVTTPIGNLEDITRRALELLACVDLFAEEDTRTSKLLLHLGIIATPKAFHIDNEFQEKQNLLAAKLEIGNNIAVSSD 80 (276)
T ss_pred CEEEECCCCcCHHHHhHHHHHHHHhCCEEEecCchhHHHHHHhcCCCCceEEEecccHhHHHHHHHHHHHcCCcEEEEec
Confidence 48999999999999999999999999999999999999999999998888889999999889999999999999999999
Q ss_pred CCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCccEEEEEEeCCCCcchHHHHHhhhCCCCeEEEEeCc
Q 024054 162 AGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPP 241 (273)
Q Consensus 162 ~GDP~iys~~~~l~~~l~~~gi~vevIPGISS~~aAaA~lG~pl~~~~~ig~lp~~~~~r~~~L~~l~~~~~tlVl~~~~ 241 (273)
+|.|++.|||..+++.+.+.|++|.++||+|++.+|.+.+|++-+.|.|.||+|.+...|.+.++.+++...|+|||++|
T Consensus 81 AG~P~ISDPG~~LV~~~~~~~i~v~~ipG~sA~~~Al~~SG~~~~~f~F~GFlp~k~~~r~~~l~~l~~~~~t~ifyEsp 160 (276)
T TIGR00096 81 AGPPLISDPGHLLVACREKANIIVVPLPGAAALTAALCASGPATDRFFFGGFLPKKSKRRQALKAYIAEERTTVFFYESH 160 (276)
T ss_pred CCCCCcCCccHHHHHHHHHCCCeEEcCChHHHHHHHHHhcCCCCCceEEeeeCCCChHHHHHHHHHHhCCCCeEEEEECc
Confidence 99999999999999999999999999999999999999999999999999999988777778888888899999999999
Q ss_pred ccHHHHHHHHhhhcCCCcEEEeEehhhh
Q 024054 242 HKLLQFLEETSLLFGYSRYIRYLKILFL 269 (273)
Q Consensus 242 ~~l~~i~~~L~e~~~~d~~v~v~~~l~~ 269 (273)
+++.++++.+.+.++ ++++++|++|+-
T Consensus 161 ~Rl~~~L~~l~~~~g-~r~i~~arELTK 187 (276)
T TIGR00096 161 HRLLTTLTDLNVFLG-SERFVGAAELTK 187 (276)
T ss_pred HhHHHHHHHHHHhcC-CceEEEEEecCC
Confidence 999999999987665 799999999974
No 13
>COG1010 CobJ Precorrin-3B methylase [Coenzyme metabolism]
Probab=100.00 E-value=1e-32 Score=243.78 Aligned_cols=185 Identities=23% Similarity=0.249 Sum_probs=162.0
Q ss_pred CCCeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhccCCCcEEecCCCCHHHHHHHHHHHHhCCCeEEE
Q 024054 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVAL 158 (273)
Q Consensus 79 ~~g~l~iVGvGPGdpdlLTlrA~~~L~~ADvV~~~~~~~~~~ll~~~~~~~~~i~~~~~~~~~~~~~ii~~l~~G~~Vv~ 158 (273)
|.|+||+||+|||+++++|.+|.++|++||+|+++.+++ ++++ +.++++++..+|..+-++++..++.+++|++|++
T Consensus 1 ~~G~L~VVGiGPG~~~~mT~~A~~al~~ad~ivGY~~Y~--d~i~-l~~~k~v~~s~m~~Ei~Ra~~AielA~~G~~Val 77 (249)
T COG1010 1 MTGKLYVVGIGPGDPELMTPEARRALEEADVIVGYTTYL--DLIE-LRPGKEVIRSGMREEIERAKEAIELAAEGRDVAL 77 (249)
T ss_pred CCceEEEEEeCCCChhhCCHHHHHHHHhCCEEEecHHHH--HHHh-cCCCCEEEeCCcHhHHHHHHHHHHHHhcCCeEEE
Confidence 469999999999999999999999999999999997765 5666 6678888888888888899999999999999999
Q ss_pred EccCCCCCCCchHHHHHHHhhhCC---CCEEEEccchHHHHHHHhCCCCCc-cEEEEEEeCC---CCcchHHHHHhhhCC
Q 024054 159 ISDAGTPGISDPGTELAKLCVDEK---IPVVPIPGASAFVAALSASGLATD-EFTFVGFLPK---HARSRTERLMLSANE 231 (273)
Q Consensus 159 LS~~GDP~iys~~~~l~~~l~~~g---i~vevIPGISS~~aAaA~lG~pl~-~~~~ig~lp~---~~~~r~~~L~~l~~~ 231 (273)
+| +|||++|+...-.++.+.+++ ++++|+||||+++++||++|-|+. ||+.+. +|. +|...++.+..+++.
T Consensus 78 VS-sGDpgVYgMA~lv~E~~~~~~~~~v~veVvPGvTA~~aaAa~lGAPL~hDF~~IS-LSDlLtPwe~IekRl~aAA~a 155 (249)
T COG1010 78 VS-SGDPGVYGMAGLVLEAAEEEGWYDVDVEVVPGVTAALAAAARLGAPLGHDFCVIS-LSDLLTPWEVIEKRLRAAAEA 155 (249)
T ss_pred Ee-CCCccHHHhHHHHHHHHHhcCCCCccEEEeCChHHHHHHHHHhCCCcccceEEEE-hHhcCCcHHHHHHHHHHHhhC
Confidence 98 999999999888888887654 899999999999999999999995 999884 233 344557788899999
Q ss_pred CCeEEEEeCccc-----HHHHHHHHhhhcCCCcEEEeEehhh
Q 024054 232 VKTQIFYVPPHK-----LLQFLEETSLLFGYSRYIRYLKILF 268 (273)
Q Consensus 232 ~~tlVl~~~~~~-----l~~i~~~L~e~~~~d~~v~v~~~l~ 268 (273)
+.+++||++.++ +.+.++.|.++.++++||.+++|.|
T Consensus 156 dfVi~~YNP~s~~R~~~~~~a~eil~~~r~~~tpVgivrnag 197 (249)
T COG1010 156 DFVIALYNPISKRRPEQLGRAFEILREHRSPDTPVGIVRNAG 197 (249)
T ss_pred CEEEEEECCccccchHHHHHHHHHHHHhcCCCCcEEEEecCC
Confidence 999999998653 5888888888888999999999976
No 14
>PRK07168 bifunctional uroporphyrinogen-III methyltransferase/uroporphyrinogen-III synthase; Reviewed
Probab=100.00 E-value=1.8e-32 Score=267.90 Aligned_cols=186 Identities=23% Similarity=0.251 Sum_probs=153.2
Q ss_pred CCCeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhccCCCcEEecCC------CCHHHHHHHHHHHHhC
Q 024054 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHK------FNESQREQTVLNRLKQ 152 (273)
Q Consensus 79 ~~g~l~iVGvGPGdpdlLTlrA~~~L~~ADvV~~~~~~~~~~ll~~~~~~~~~i~~~~------~~~~~~~~~ii~~l~~ 152 (273)
|.|+||+||+||||||+||+||+++|++||+|+| ++.+.+.+++...++.+.+.... ..++++.+.+++.+++
T Consensus 1 m~G~V~lVGaGPGdp~LLTlrA~~~L~~ADVVvy-drlv~~~~l~~~~~~~~~i~~gk~~~~~~~~qe~i~~~l~~~a~~ 79 (474)
T PRK07168 1 MNGYVYLVGAGPGDEGLITKKAIECLKRADIVLY-DRLLNPFFLSYTKQTCELMYCGKMPKNHIMRQEMINAHLLQFAKE 79 (474)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhCCEEEE-eCcCCHHHHhhcCCCcEEEeccCcCCCccccHHHHHHHHHHHHhC
Confidence 4589999999999999999999999999999999 45666666666555555543221 2345566677888899
Q ss_pred CCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCc------cEEEEEEeCCCCcch---HH
Q 024054 153 GEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATD------EFTFVGFLPKHARSR---TE 223 (273)
Q Consensus 153 G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~vevIPGISS~~aAaA~lG~pl~------~~~~ig~lp~~~~~r---~~ 223 (273)
|++|+++ ++|||++||++.++++++.+.|+++||||||||+++|+|++|+||+ ++.++ +.|.+.. ..
T Consensus 80 Gk~VvrL-~~GDP~vfg~~~ee~~~l~~~gi~~eVVPGISS~~aaaA~aGiPlt~r~~~~s~~vi---T~h~~~~~~~~~ 155 (474)
T PRK07168 80 GKIVVRL-KGGDPSIFGRVGEEAETLAAANIPYEIVPGITSSIAASSYAGIPLTHRNYSNSVTLL---TGHAKGPLTDHG 155 (474)
T ss_pred CCEEEEE-eCCCchHHhhHHHHHHHHHhCCCCEEEECChhHHHHHHHHcCCCCCCccccceEEEE---ccCcCCccccch
Confidence 9999999 7999999999999999999999999999999999999999999995 45554 7776432 12
Q ss_pred HHHhhhCCCCeEEEEeCcccHHHHHHHHhh-hcCCCcEEEeEehhhhh
Q 024054 224 RLMLSANEVKTQIFYVPPHKLLQFLEETSL-LFGYSRYIRYLKILFLF 270 (273)
Q Consensus 224 ~L~~l~~~~~tlVl~~~~~~l~~i~~~L~e-~~~~d~~v~v~~~l~~~ 270 (273)
++..+. ..+|+||||+.++++++.+.|.+ |+++++|++++++.+.-
T Consensus 156 ~~~~l~-~~~tlV~lm~~~~l~~I~~~L~~~G~~~~tpvavv~~~t~~ 202 (474)
T PRK07168 156 KYNSSH-NSDTIAYYMGIKNLPTICENLRQAGKKEDTPVAVIEWGTTG 202 (474)
T ss_pred hHHHhc-CCCeEEEEcChhhHHHHHHHHHHcCcCCCCeEEEEEECCCC
Confidence 355555 45799999999999999999998 78899999999998763
No 15
>TIGR01467 cobI_cbiL precorrin-2 C20-methyltransferase. This model represents precorrin-2 C20-methyltransferase, one of several closely related S-adenosylmethionine-dependent methyltransferases involved in cobalamin (vitamin B12) biosynthesis.
Probab=100.00 E-value=5.3e-32 Score=241.28 Aligned_cols=185 Identities=25% Similarity=0.292 Sum_probs=146.3
Q ss_pred CeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCC-----CHHHHhhccC--CCcEE--ecCCCC--------HHHHH
Q 024054 81 PGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRH-----SGKLLQYYNI--KTPLL--SYHKFN--------ESQRE 143 (273)
Q Consensus 81 g~l~iVGvGPGdpdlLTlrA~~~L~~ADvV~~~~~~~-----~~~ll~~~~~--~~~~i--~~~~~~--------~~~~~ 143 (273)
|+||+||+|||||++||++|+++|++||+|++++... ..+++..+.. +++++ .+++.. .++.+
T Consensus 1 ~~i~iVG~GpG~~~~lT~~a~~~l~~advV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (230)
T TIGR01467 1 GKLYGVGVGPGDPELITVKALEALRSADVIAVPASKKGRESLARKIVEDYLKPNDTRILELVFPMTKDRDELEKAWDEAA 80 (230)
T ss_pred CEEEEEEecCCCcHHHHHHHHHHHhhCCEEEEeCCCCCCcchHHHHHHHhcCccCceEEEEeccccCChHHHHHHHHHHH
Confidence 5799999999999999999999999999999975432 2234444322 23332 233321 13455
Q ss_pred HHHHHHHhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCcc-EEEEEEeCCCCcchH
Q 024054 144 QTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDE-FTFVGFLPKHARSRT 222 (273)
Q Consensus 144 ~~ii~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~vevIPGISS~~aAaA~lG~pl~~-~~~ig~lp~~~~~r~ 222 (273)
+.+.+.+++|++|+++ .+|||++|+++.++++.+.+.|+++++||||||+++|+|++|+||++ +.++.+++.|+. .
T Consensus 81 ~~i~~~~~~g~~Vv~l-~~GDP~~y~~~~~l~~~~~~~~~~veviPGiSs~~~a~a~~g~~l~~~~~~~~~~~~~~~--~ 157 (230)
T TIGR01467 81 EAVAAELEEGRDVAFL-TLGDPSLYSTFSYLLQRLQGMGIEVEVVPGITSFAACASAAGLPLVEGDESLAILPATAG--E 157 (230)
T ss_pred HHHHHHHHCCCcEEEE-eCCCCCcccCHHHHHHHHHHCCCcEEEeCChhHHHHHHHHhCCCcccCCceEEEEeCCCC--H
Confidence 6677778889999999 59999999999999999988899999999999999999999999985 566666677753 3
Q ss_pred HHHHhhhCCCCeEEEEeCcccHHHHHHHHhhhcCCCcEEEeEehhhh
Q 024054 223 ERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRYIRYLKILFL 269 (273)
Q Consensus 223 ~~L~~l~~~~~tlVl~~~~~~l~~i~~~L~e~~~~d~~v~v~~~l~~ 269 (273)
..+...++.+++++||+++++++++.+.|.+ .+.+.++++++|++.
T Consensus 158 ~~~~~~~~~~~~vvil~~~~~~~~i~~~L~~-~g~~~~v~v~e~l~~ 203 (230)
T TIGR01467 158 AELEKALAEFDTVVLMKVGRNLPQIKEALAK-LGRLDAAVVVERATM 203 (230)
T ss_pred HHHHHHhccCCeEEEEecCCCHHHHHHHHHH-cCCcccEEEEEECCC
Confidence 4576777778999999999999999988876 233557999999986
No 16
>PF00590 TP_methylase: Tetrapyrrole (Corrin/Porphyrin) Methylases Note this Prosite entry does not include all members of this family.; InterPro: IPR000878 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including cobalamin (vitamin B12), haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. This entry represents several tetrapyrrole methylases, which consist of two non-similar domains. These enzymes catalyse the methylation of their substrates using S-adenosyl-L-methionine as a methyl source. Enzymes in this family include: Uroporphyrinogen III methyltransferase (2.1.1.107 from EC) (SUMT), which catalyses the conversion of uroporphyrinogen III to precorrin-2 at the first branch-point of the tetrapyrrole synthesis pathway, directing the pathway towards cobalamin or sirohaem synthesis []. Precorrin-2 C20-methyltransferase CobI/CbiL (2.1.1.130 from EC), which introduces a methyl group at C-20 on precorrin-2 to produce precorrin-3A during cobalamin biosynthesis. This reaction is key to the conversion of a porphyrin-type tetrapyrrole ring to a corrin ring []. In some species, this enzyme is part of a bifunctional protein. Precorrin-4 C11-methyltransferase CobM/CbiF (2.1.1.133 from EC), which introduces a methyl group at C-11 on precorrin-4 to produce precorrin-5 during cobalamin biosynthesis []. Sirohaem synthase CysG (2.1.1.107 from EC), domains 4 and 5, which synthesizes sirohaem from uroporphyrinogen III, at the first branch-point in the tetrapyrrole biosynthetic pathway, directing the pathway towards sirohaem synthesis []. Diphthine synthase (2.1.1.98 from EC), which carries out the methylation step during the modification of a specific histidine residue of elongation factor 2 (EF-2) during diphthine synthesis. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 2ZVC_A 2ZVB_A 1WDE_A 3ND1_A 2E0K_A 2E0N_B 1VA0_B 1V9A_A 3I4T_A 3NDC_B ....
Probab=100.00 E-value=6.9e-32 Score=235.29 Aligned_cols=185 Identities=22% Similarity=0.233 Sum_probs=144.9
Q ss_pred eEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhc-cC----CCcEEecCCCCHHHHHHHH--HHHHhCCC
Q 024054 82 GLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYY-NI----KTPLLSYHKFNESQREQTV--LNRLKQGE 154 (273)
Q Consensus 82 ~l~iVGvGPGdpdlLTlrA~~~L~~ADvV~~~~~~~~~~ll~~~-~~----~~~~i~~~~~~~~~~~~~i--i~~l~~G~ 154 (273)
+||+||+|||||++||++|+++|++||+|+++. +. .+.+..+ .. ....... ....++..+.+ ++.+++|+
T Consensus 1 ~l~iVG~GpG~~~~lT~~a~~~l~~advv~~~~-r~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~g~ 77 (210)
T PF00590_consen 1 KLYIVGLGPGDPDLLTLRALEALKNADVVIGPE-RA-LEIVRDLLPEIFPMGKDRESL-EESYDEIAEIIEAIEAAKEGK 77 (210)
T ss_dssp EEEEEEEBSSSGGGSBHHHHHHHHHSSEEEEET-TC-HHHHHHHHHTEETTSSEEEEE-HHHHHHHHHHHHHHHHHHTTS
T ss_pred CEEEEecCCCCHHHHHHHHHHHHHhCCcccccc-cc-hHHHHhhccccccccccccch-hhhhhHHHHHHHHHHHHhccC
Confidence 699999999999999999999999999999986 44 3444332 11 1111111 11235566777 78889999
Q ss_pred eEEEEccCCCCCCCchHHHHHHHhhh--CCCCEEEEccchHHHHHHHhCCCCCccEEEEEE-e-CCCCcchHHHHHhhhC
Q 024054 155 IVALISDAGTPGISDPGTELAKLCVD--EKIPVVPIPGASAFVAALSASGLATDEFTFVGF-L-PKHARSRTERLMLSAN 230 (273)
Q Consensus 155 ~Vv~LS~~GDP~iys~~~~l~~~l~~--~gi~vevIPGISS~~aAaA~lG~pl~~~~~ig~-l-p~~~~~r~~~L~~l~~ 230 (273)
+|+++ .+|||++|+++.++++.+.+ .|++++++|||||+++++|++|+||+++.++.. . +.....+...+..+.+
T Consensus 78 ~V~~l-~~GDP~~~~~~~~l~~~l~~~~~gi~v~iiPGiSs~~~a~a~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 156 (210)
T PF00590_consen 78 DVVVL-VSGDPLFFSTGSYLVRALRAEERGIEVEIIPGISSFQAAAARLGIPLTDGGFISLHGLRDLDTEREKLLENLLA 156 (210)
T ss_dssp EEEEE-ESBSTTSSSSHHHHHHHHHHHHTTCEEEEE--TTHHHHHHHHCTSTSSBTTTBEEEETSSSSHHHHHHHHHHHT
T ss_pred CEEEe-CCCCCCcccHHHHHHHHHHhhcCCCceEEEecCcHHHHHHHHHcCCcccCcEEEEEEecccccchHHHHHHHHh
Confidence 99999 59999999999999999998 899999999999999999999999996533211 2 2222234567888888
Q ss_pred CCCeEEEEeCcccHHHHHHHHhhh-cCCCcEEEeEehhhhh
Q 024054 231 EVKTQIFYVPPHKLLQFLEETSLL-FGYSRYIRYLKILFLF 270 (273)
Q Consensus 231 ~~~tlVl~~~~~~l~~i~~~L~e~-~~~d~~v~v~~~l~~~ 270 (273)
.++|+++|+.++++.++++.|.+. .++++++++++++|.-
T Consensus 157 ~~~~~vil~~~~~~~~i~~~L~~~~~~~~~~v~v~~~lg~~ 197 (210)
T PF00590_consen 157 NGDTLVILTDPRRLAEIAELLLERLYPPDTPVAVGERLGYP 197 (210)
T ss_dssp TTSEEEEEESGCCHHHHHHHHHHHSHTTTSEEEEEESTTST
T ss_pred CCCEEEEEccCchHHHHHHHHHhhCCCCCcEEEHHHhcCCC
Confidence 899999999999999999999986 5678999999999864
No 17
>PRK05948 precorrin-2 methyltransferase; Provisional
Probab=100.00 E-value=1.4e-31 Score=241.00 Aligned_cols=186 Identities=20% Similarity=0.168 Sum_probs=144.3
Q ss_pred CCeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCC-----CHHHHhhc-cCCCcEE--ecCCCCH--------HHHH
Q 024054 80 EPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRH-----SGKLLQYY-NIKTPLL--SYHKFNE--------SQRE 143 (273)
Q Consensus 80 ~g~l~iVGvGPGdpdlLTlrA~~~L~~ADvV~~~~~~~-----~~~ll~~~-~~~~~~i--~~~~~~~--------~~~~ 143 (273)
+|+||+||+||||||+||+||+++|++||+|+++.... +.++++.+ ..+++++ .++|..+ ++.+
T Consensus 3 ~g~ly~VGvGPGdp~LlTlkA~~~L~~advi~~p~~~~~~~s~a~~i~~~~~~~~~~~~~l~fpm~~~~~~~~~~~~~~~ 82 (238)
T PRK05948 3 LGTLYGISVGPGDPELITLKGLRLLQSAPVVAFPAGLAGQPGLAEQIIAPWLSPQQIKLPLYFPYVQDEEQLEQAWQAAA 82 (238)
T ss_pred CCEEEEEEecCCChHHhHHHHHHHHhhCCEEEEeCCCCCchhHHHHHHHHHcCCCcEEEEecCCccCChHHHHHHHHHHH
Confidence 58999999999999999999999999999999985432 23445544 3444443 3555433 2345
Q ss_pred HHHHHHHhCCCeEEEEccCCCCCCCchHHHHHHHhhh--CCCCEEEEccchHHHHHHHhCCCCCcc-EEEEEEeCCCCcc
Q 024054 144 QTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVD--EKIPVVPIPGASAFVAALSASGLATDE-FTFVGFLPKHARS 220 (273)
Q Consensus 144 ~~ii~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~--~gi~vevIPGISS~~aAaA~lG~pl~~-~~~ig~lp~~~~~ 220 (273)
+.+.+.+++|++|+++ ..|||++||++.++.+.+.+ .|+++|+||||||+++++|++|+||.. ..-+.++|.|.+
T Consensus 83 ~~i~~~~~~g~~v~~l-~~GDp~~ys~~~~l~~~l~~~~~~~~veivPGIss~~a~aa~~g~pL~~~~e~l~ii~~~~~- 160 (238)
T PRK05948 83 DQVWHYLEQGEDVAFA-CEGDVSFYSTFTYLAQTLQELYPQVAIQTIPGVCSPLAAAAALGIPLTLGSQRLAILPALYH- 160 (238)
T ss_pred HHHHHHHHcCCeEEEE-eCCChHHHHHHHHHHHHHHhcCCCCCEEEECChhHHHHHHHHhCCCeecCCCeEEEEcCCCC-
Confidence 6778888999999999 69999999999999999887 389999999999999999999999972 222334588754
Q ss_pred hHHHHHhhhCCCCeEEEEeCcccHHHHHHHHhh-hcCCCcEEEeEehhhhh
Q 024054 221 RTERLMLSANEVKTQIFYVPPHKLLQFLEETSL-LFGYSRYIRYLKILFLF 270 (273)
Q Consensus 221 r~~~L~~l~~~~~tlVl~~~~~~l~~i~~~L~e-~~~~d~~v~v~~~l~~~ 270 (273)
...++..++..+++|+|+..+.++++.+.|.+ ++. ..++++++.|.=
T Consensus 161 -~~~l~~~l~~~~~vVlmk~~~~~~~i~~~L~~~g~~--~~~~vv~~~~~~ 208 (238)
T PRK05948 161 -LEELEQALTWADVVVLMKVSSVYPQVWQWLKARNLL--EQASLVERATTP 208 (238)
T ss_pred -HHHHHHHHhCCCEEEEEECCccHHHHHHHHHhCCCC--CCEEEEEECCCC
Confidence 34566666677889999888888999999987 443 247888888753
No 18
>PRK10637 cysG siroheme synthase; Provisional
Probab=99.98 E-value=5.2e-31 Score=257.00 Aligned_cols=188 Identities=17% Similarity=0.199 Sum_probs=155.4
Q ss_pred CCCCeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhccCCCcEEec------CCCCHHHHHHHHHHHHh
Q 024054 78 PLEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSY------HKFNESQREQTVLNRLK 151 (273)
Q Consensus 78 ~~~g~l~iVGvGPGdpdlLTlrA~~~L~~ADvV~~~~~~~~~~ll~~~~~~~~~i~~------~~~~~~~~~~~ii~~l~ 151 (273)
..+|+||+||+|||||++||+||+++|++||+|+++ .+..+.+++.+....+.+.. +..++++..+.+.+.+.
T Consensus 213 ~~~g~l~iVG~GpGdp~lLTl~A~~~L~~ADvV~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 291 (457)
T PRK10637 213 DHRGEVVLVGAGPGDAGLLTLKGLQQIQQADVVVYD-RLVSDDIMNLVRRDADRVFVGKRAGYHCVPQEEINQILLREAQ 291 (457)
T ss_pred CCCcEEEEEEeCCCChHHHHHHHHHHHHcCCEEEEC-CCCCHHHHhhcccCCEEEEcCCCCCCCCcCHHHHHHHHHHHHh
Confidence 346999999999999999999999999999999995 56666666655444333321 22345677788888889
Q ss_pred CCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCc------cEEEEEEeCCCCcch-HHH
Q 024054 152 QGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATD------EFTFVGFLPKHARSR-TER 224 (273)
Q Consensus 152 ~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~vevIPGISS~~aAaA~lG~pl~------~~~~ig~lp~~~~~r-~~~ 224 (273)
+|++|++| .+|||++||++.++++++.+.|+++++||||||+++|+|++|+||+ ++.+ +|.|++.. ...
T Consensus 292 ~G~~Vv~L-~sGDP~~yg~~~~l~~~l~~~gi~vevVPGISS~~aAaA~~g~pl~~~~~~~~~~v---is~h~~~~~~~~ 367 (457)
T PRK10637 292 KGKRVVRL-KGGDPFIFGRGGEELETLCNAGIPFSVVPGITAASGCSAYSGIPLTHRDYAQSVRL---VTGHLKTGGELD 367 (457)
T ss_pred CCCEEEEE-eCCCccccccHHHHHHHHHhCCCCEEEECCHhHHHHHHHHcCCCcccCCceeeEEE---EeCccCCCCccC
Confidence 99999999 5999999999999999999889999999999999999999999994 4444 47776421 223
Q ss_pred HHhhhCCCCeEEEEeCcccHHHHHHHHhh-hcCCCcEEEeEehhhhh
Q 024054 225 LMLSANEVKTQIFYVPPHKLLQFLEETSL-LFGYSRYIRYLKILFLF 270 (273)
Q Consensus 225 L~~l~~~~~tlVl~~~~~~l~~i~~~L~e-~~~~d~~v~v~~~l~~~ 270 (273)
+..+++...|+|+|++.++..++.+.|.+ ++++++++++++|++.-
T Consensus 368 ~~~l~~~~~t~Vl~~~~~~~~~i~~~L~~~g~~~~~~v~v~e~l~~~ 414 (457)
T PRK10637 368 WENLAAEKQTLVFYMGLNQAATIQQKLIEHGMPADMPVALVENGTSV 414 (457)
T ss_pred HHHHhCCCCeEEEECCHhhHHHHHHHHHhcCCCCCCcEEEEEeCCCC
Confidence 67777888999999999999999999987 77788999999999863
No 19
>TIGR01466 cobJ_cbiH precorrin-3B C17-methyltransferase. This model represents precorrin-3B C17-methyltransferase, one of two methyltransferases commonly referred to as precorrin-3 methylase (the other is precorrin-4 C11-methyltransferase, EC 2.1.1.133). This enzyme participates in the pathway toward the biosynthesis of cobalamin and related products. Members of this family may appear as fusion proteins with other enzymes of cobalamin biosynthesis.
Probab=99.97 E-value=4.8e-31 Score=236.19 Aligned_cols=182 Identities=21% Similarity=0.186 Sum_probs=145.3
Q ss_pred EEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhccCCCcEEecCCCCHHHHHHHHHHHHhCCCeEEEEccC
Q 024054 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDA 162 (273)
Q Consensus 83 l~iVGvGPGdpdlLTlrA~~~L~~ADvV~~~~~~~~~~ll~~~~~~~~~i~~~~~~~~~~~~~ii~~l~~G~~Vv~LS~~ 162 (273)
||+||+|||||++||++|+++|++||+|+++++ ..++++.+..+++++.+++.++.+..+.+++.+++|++|+++ .+
T Consensus 1 l~iVG~GpG~~~~lT~~A~~~i~~AdvV~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Vv~l-~~ 77 (239)
T TIGR01466 1 LYVVGIGPGAEELMTPEAKEALAEADVIVGYKT--YLDLIEDLIPGKEVVTSGMREEIARAELAIELAAEGRTVALV-SS 77 (239)
T ss_pred CEEEEeCCCChHHHHHHHHHHHHhCCEEEECcc--HHHHHHhhCCCCEEEeCCChHHHHHHHHHHHHHhCCCCEEEE-ec
Confidence 689999999999999999999999999999854 235666555555665556544445556667777899999999 59
Q ss_pred CCCCCCchHHHHHHHhhhCC--CCEEEEccchHHHHHHHhCCCCC-ccEEEEEEeCCCCc--ch---HHHHHhhhCCCCe
Q 024054 163 GTPGISDPGTELAKLCVDEK--IPVVPIPGASAFVAALSASGLAT-DEFTFVGFLPKHAR--SR---TERLMLSANEVKT 234 (273)
Q Consensus 163 GDP~iys~~~~l~~~l~~~g--i~vevIPGISS~~aAaA~lG~pl-~~~~~ig~lp~~~~--~r---~~~L~~l~~~~~t 234 (273)
|||++|+.+.++++.+.+.+ ++++++|||||+++|+|++|+|| +++.++ |.|+. +. .+.+..+++.+.+
T Consensus 78 GDP~~~~~~~~l~~~l~~~~~~~~v~viPGiSS~~aa~a~~g~p~~~~~~~i---s~~~~~~~~~~~~~~l~~~~~~~~~ 154 (239)
T TIGR01466 78 GDPGIYGMAALVFEALEKKGAEVDIEVIPGITAASAAASLLGAPLGHDFCVI---SLSDLLTPWPEIEKRLRAAAEADFV 154 (239)
T ss_pred CCCcccccHHHHHHHHHhcCCCCCEEEeCCccHHHHHHHHcCCCcccccEEE---ECCCCCCCchHHHHHHHHHhCCCcE
Confidence 99999999999999997764 59999999999999999999999 787776 55542 11 2234556666778
Q ss_pred EEEEeCc-----ccHHHHHHHHhhhcCCCcEEEeEehhhhh
Q 024054 235 QIFYVPP-----HKLLQFLEETSLLFGYSRYIRYLKILFLF 270 (273)
Q Consensus 235 lVl~~~~-----~~l~~i~~~L~e~~~~d~~v~v~~~l~~~ 270 (273)
+++|+.. +++.++.+.|.++.+.+++++++++++.=
T Consensus 155 ~vl~~~~~~~~~~~~~~i~~~L~~~~~~~~~v~v~~~l~~~ 195 (239)
T TIGR01466 155 IAIYNPRSKRRPEQFRRAMEILLEHRKPDTPVGIVRNAGRE 195 (239)
T ss_pred EEEECCcccchhhhHHHHHHHHHhcCCCCCEEEEEEECCCC
Confidence 9999864 47888888888866679999999999863
No 20
>PRK05576 cobalt-precorrin-2 C(20)-methyltransferase; Validated
Probab=99.97 E-value=4.3e-31 Score=235.72 Aligned_cols=183 Identities=18% Similarity=0.264 Sum_probs=140.5
Q ss_pred CCeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCC-----HHHHhhc-cCCCcEEe--cCCC-CH-------HHHH
Q 024054 80 EPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHS-----GKLLQYY-NIKTPLLS--YHKF-NE-------SQRE 143 (273)
Q Consensus 80 ~g~l~iVGvGPGdpdlLTlrA~~~L~~ADvV~~~~~~~~-----~~ll~~~-~~~~~~i~--~~~~-~~-------~~~~ 143 (273)
+|+||+||+|||||++||+||+++|++||+|++++.+.. ..++..+ ..+++++. +++. +. ++..
T Consensus 1 m~~l~vVG~GpG~~~~lT~~a~~~l~~advV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (229)
T PRK05576 1 MGKLYGIGLGPGDPELLTVKAARILEEADVVYAPASRKGGGSLALNIVRPYLKEETEIVELHFPMSKDEEEKEAVWKENA 80 (229)
T ss_pred CCEEEEEEeCCCChHHHHHHHHHHHhcCCEEEEECCCCCchhHHHHHHHHhcCCCCEEEEeeCCCCCChHHHHHHHHHHH
Confidence 378999999999999999999999999999999854332 2234433 33334332 3332 11 2455
Q ss_pred HHHHHHHhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCc-cEEEEEEeCCCCcchH
Q 024054 144 QTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATD-EFTFVGFLPKHARSRT 222 (273)
Q Consensus 144 ~~ii~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~vevIPGISS~~aAaA~lG~pl~-~~~~ig~lp~~~~~r~ 222 (273)
+.+.+.+++|++|+++ .+|||++|+.+.++++.+.+.|++++++|||||+++|+|++|+||+ .+..+.++|.|+ .
T Consensus 81 ~~i~~~~~~g~~V~~l-~~GDP~~y~~~~~l~~~~~~~~~~v~viPGiSs~~~a~a~~g~~l~~~~~~~~iis~~~---~ 156 (229)
T PRK05576 81 EEIAAEAEEGKNVAFI-TLGDPNLYSTFSHLLEYLKCHDIEVETVPGISSFTAIASRAGVPLAMGDESLAIIPATR---E 156 (229)
T ss_pred HHHHHHHHcCCcEEEE-eCcCccccccHHHHHHHHHhCCCCEEEeCChhHHHHHHHHcCCCcccCCceEEEEECCC---H
Confidence 6777777899999999 5999999999999999998889999999999999999999999998 222223347775 3
Q ss_pred HHHHhhhCCCCeEEEEeCcccHHHHHHHHhhhcCCCcEEEeEehhhh
Q 024054 223 ERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRYIRYLKILFL 269 (273)
Q Consensus 223 ~~L~~l~~~~~tlVl~~~~~~l~~i~~~L~e~~~~d~~v~v~~~l~~ 269 (273)
+.+....+.++++|+|+..++..++.+.|.++ + .++++|+|||.
T Consensus 157 ~~l~~~l~~~~~~vl~~~~~~~~~i~~~l~~~-~--~~v~v~e~l~~ 200 (229)
T PRK05576 157 ALIEQALTDFDSVVLMKVYKNFALIEELLEEG-Y--LDALYVRRAYM 200 (229)
T ss_pred HHHHHHhhcCCEEEEEecCCCHHHHHHHHHhc-C--CCEEEEEECCC
Confidence 45556666779999999888888877666653 2 39999999985
No 21
>PRK05990 precorrin-2 C(20)-methyltransferase; Reviewed
Probab=99.97 E-value=8e-31 Score=236.22 Aligned_cols=184 Identities=18% Similarity=0.139 Sum_probs=135.4
Q ss_pred CCeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCC----CHHHHh-hccCCCcEE--ecCCCCH-------------
Q 024054 80 EPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRH----SGKLLQ-YYNIKTPLL--SYHKFNE------------- 139 (273)
Q Consensus 80 ~g~l~iVGvGPGdpdlLTlrA~~~L~~ADvV~~~~~~~----~~~ll~-~~~~~~~~i--~~~~~~~------------- 139 (273)
+|+||+||+||||||+||+||+++|++||+|+++...- ..++++ .+..+++++ .++|..+
T Consensus 2 ~g~l~~VG~GPGdp~LlTlkA~~~L~~advi~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~pm~~~~~~~~~~~~~~~~ 81 (241)
T PRK05990 2 KGRLIGLGVGPGDPELLTLKALRLLQAAPVVAYFVAKGKKGNAFGIVEAHLSPGQTLLPLVYPVTTEILPPPLCYETVIA 81 (241)
T ss_pred CceEEEEeCCCCChHHhhHHHHHHHhhCCEEEEECCCCCcchHHHHHHHHcCCCceEEEeecCCccccccccchhhhHHH
Confidence 48999999999999999999999999999999974321 235665 344444432 3444211
Q ss_pred ---HHHHHHHHHHHhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCc-cEEEEEEeC
Q 024054 140 ---SQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATD-EFTFVGFLP 215 (273)
Q Consensus 140 ---~~~~~~ii~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~vevIPGISS~~aAaA~lG~pl~-~~~~ig~lp 215 (273)
++.++.+.+.+++|++|+++ ..|||++||++.++.+.+. +++++||||||||+++++|++|+||. +...+.++|
T Consensus 82 ~~~~~~~~~i~~~~~~G~~Vv~L-~~GDP~iyst~~~l~~~l~-~~i~~evIPGISS~~aaaA~~gipL~~~~~~~~i~~ 159 (241)
T PRK05990 82 DFYDTSAEAVAAHLDAGRDVAVI-CEGDPFFYGSYMYLHDRLA-PRYETEVIPGVCSMLGCWSVLGAPLVYRNQSLSVLS 159 (241)
T ss_pred HHHHHHHHHHHHHHHCCCeEEEE-eCCCcHHHhHHHHHHHHHh-cCCCEEEECcHHHHHHHHHHhCCCeEcCCeEEEEEc
Confidence 34557788888999999999 6999999999999998884 47999999999999999999999996 223333456
Q ss_pred CCCcchHHHHHhhhCCCCeEEEEeCcccHHHHHHHHhh-hcCCCcEEEeEehhhh
Q 024054 216 KHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSL-LFGYSRYIRYLKILFL 269 (273)
Q Consensus 216 ~~~~~r~~~L~~l~~~~~tlVl~~~~~~l~~i~~~L~e-~~~~d~~v~v~~~l~~ 269 (273)
.+... .+.++.+.+. ++.|+|+..++++++.+.|.+ +++ + +++++++++.
T Consensus 160 ~~~~~-~~l~~~l~~~-~~~vv~k~~~~~~~i~~~L~~~g~~-~-~~~~v~~~~~ 210 (241)
T PRK05990 160 GVLPE-EELRRRLADA-DAAVIMKLGRNLDKVRRVLAALGLL-D-RALYVERATM 210 (241)
T ss_pred CCCCh-HHHHHHHhCC-CCEEEEEeCCcHHHHHHHHHHcCCC-C-CEEEEEECCC
Confidence 65332 2333444444 445566666999999999987 443 3 4556688775
No 22
>COG2243 CobF Precorrin-2 methylase [Coenzyme metabolism]
Probab=99.97 E-value=9e-30 Score=227.12 Aligned_cols=187 Identities=20% Similarity=0.249 Sum_probs=142.9
Q ss_pred CCeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCC----CCCHHHHhhccC-CCcE--EecCCCCH---------HHHH
Q 024054 80 EPGLYLVATPIGNLEDITLRALRVLKSANVILSEDT----RHSGKLLQYYNI-KTPL--LSYHKFNE---------SQRE 143 (273)
Q Consensus 80 ~g~l~iVGvGPGdpdlLTlrA~~~L~~ADvV~~~~~----~~~~~ll~~~~~-~~~~--i~~~~~~~---------~~~~ 143 (273)
++++|+||+||||||+||+||+++|++||+|+++.+ ..+..+++.+-. +... +.+++..+ ++.+
T Consensus 1 ~~klygVGvGPGDPeLlTlkAi~~L~~adVi~~P~~~g~~slAr~Iv~~y~~~~~~~~~l~fPm~~~~~e~~~~~~~e~a 80 (234)
T COG2243 1 MGKLYGVGLGPGDPELLTLKAIRALKKADVVYVPSKKGKGSLAREIVEDYLTPGSRIVELHFPMTTDMREELEDAWEEAA 80 (234)
T ss_pred CCeEEEEecCCCChhhhhHHHHHHHhhCCEEEEecCCCccchHHHHHHHhcCCCceeeEEEeccCCchHHHHHHHHHHHH
Confidence 378999999999999999999999999999999932 234556665543 3332 24555332 3456
Q ss_pred HHHHHHHhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCccE-EEEEEeCCCCcchH
Q 024054 144 QTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEF-TFVGFLPKHARSRT 222 (273)
Q Consensus 144 ~~ii~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~vevIPGISS~~aAaA~lG~pl~~~-~~ig~lp~~~~~r~ 222 (273)
+.+.+++++|++|+++ ..|||++||++.++.++++..|+++|+||||||+++++|++|+|+..- ..+.++|.... .
T Consensus 81 ~~va~~l~~G~~VAf~-~lGDP~~YsTf~~l~~~l~~~~~e~e~VPGVsS~~a~aa~~~~pL~~g~~~l~Vlp~t~~--~ 157 (234)
T COG2243 81 AEVAAELEAGRDVAFL-TLGDPTFYSTFMYLLERLRERGFEVEVVPGVSSFSACAARLGVPLVEGDDSLSVLPATRP--D 157 (234)
T ss_pred HHHHHHHHcCCeEEEE-EccCccHHHHHHHHHHHhhccCCceEEeCCcchHHHHHHHhCCceeccCceeEEEeccCc--h
Confidence 6788889999999999 599999999999999999999999999999999999999999999722 32334576653 3
Q ss_pred HHHHhhhCCCCeEEEEeCcccHHHHHHHHhhhcCCCcEEEeEehhhhh
Q 024054 223 ERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRYIRYLKILFLF 270 (273)
Q Consensus 223 ~~L~~l~~~~~tlVl~~~~~~l~~i~~~L~e~~~~d~~v~v~~~l~~~ 270 (273)
..+.......+++|+|+.+++.+++.+.|.. .+.-...+.+++++.-
T Consensus 158 ~~~~~~l~~~d~~VvMK~~~~~~~i~~~l~~-~g~~~~~~~v~R~~m~ 204 (234)
T COG2243 158 EELERALADFDTAVVMKVGRNFEKLRRLLAK-LGLLDRAVYVERATMA 204 (234)
T ss_pred hhHHhHHhhCCeEEEEecCCcHHHHHHHHHh-cCCCceEEEEeecCCC
Confidence 4556555667999999999988887777655 2222344477776653
No 23
>PRK05991 precorrin-3B C17-methyltransferase; Provisional
Probab=99.97 E-value=9.1e-30 Score=230.27 Aligned_cols=182 Identities=17% Similarity=0.230 Sum_probs=135.9
Q ss_pred CCCeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhccCCCcEEecCCCCHHHH--HHHHHHHHhCCCeE
Q 024054 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQR--EQTVLNRLKQGEIV 156 (273)
Q Consensus 79 ~~g~l~iVGvGPGdpdlLTlrA~~~L~~ADvV~~~~~~~~~~ll~~~~~~~~~i~~~~~~~~~~--~~~ii~~l~~G~~V 156 (273)
|+|+||+||+|||||++||++|+++|++||+|+++.+ +++.+............+.++. ...+++.+.+|++|
T Consensus 1 m~~~l~iVG~GpG~p~~lT~~a~~~l~~AdvV~~~~~-----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~V 75 (250)
T PRK05991 1 MSGRLFVIGTGPGNPEQMTPEALAAVEAATDFFGYGP-----YLDRLPLRADQLRHASDNREELDRAGAALAMAAAGANV 75 (250)
T ss_pred CCceEEEEEeCCCChhhhhHHHHHHHHhCCEEEEcHH-----HHHhhhccccccccCCCCHHHHHHHHHHHHHHHCCCeE
Confidence 4589999999999999999999999999999999642 3444432111111222232222 22245566789999
Q ss_pred EEEccCCCCCCCchHHHHHHHhhh-----CCCCEEEEccchHHHHHHHhCCCCCc-cEEEEEEeCCCCcch-----HHHH
Q 024054 157 ALISDAGTPGISDPGTELAKLCVD-----EKIPVVPIPGASAFVAALSASGLATD-EFTFVGFLPKHARSR-----TERL 225 (273)
Q Consensus 157 v~LS~~GDP~iys~~~~l~~~l~~-----~gi~vevIPGISS~~aAaA~lG~pl~-~~~~ig~lp~~~~~r-----~~~L 225 (273)
+++ ..|||++|+++.++.+.+.+ .+++++++|||||+++|+|++|+||+ ++.++ |.|+..+ .+.+
T Consensus 76 v~l-~~GDP~~~~~~~~l~~~~~~g~~~~~~~~v~vvPGISS~~aa~a~~g~p~~~~~~~~---s~~~~~~~~~~l~~~l 151 (250)
T PRK05991 76 CVV-SGGDPGVFAMAAAVCEAIENGPAAWRAVDLTIVPGVTAMLAVAARIGAPLGHDFCAI---SLSDNLKPWELIEKRL 151 (250)
T ss_pred EEE-eCCCchhhhhHHHHHHHHHhcccccCCceEEEECChHHHHHHHHHhCCCCCCCCEEe---ecccCCCCHHHHHHHH
Confidence 999 59999999999999998874 36899999999999999999999994 77776 5564211 2334
Q ss_pred HhhhCCCCeEEEEeCc-----ccHHHHHHHHhhhcCCCcEEEeEehhhh
Q 024054 226 MLSANEVKTQIFYVPP-----HKLLQFLEETSLLFGYSRYIRYLKILFL 269 (273)
Q Consensus 226 ~~l~~~~~tlVl~~~~-----~~l~~i~~~L~e~~~~d~~v~v~~~l~~ 269 (273)
....+.+.++|+|++. .++.+.++.|.+++.++.++++++++|.
T Consensus 152 ~~~~~~~~~~vl~~~~~~~~p~~l~~~~~~L~~~~~~~~~v~v~~~lg~ 200 (250)
T PRK05991 152 RLAAEAGFVIALYNPISRARPWQLGEAFDLLREHLPATVPVIFGRAAGR 200 (250)
T ss_pred HhhcCCCeEEEEECCccccchhhHHHHHHHHHhcCCCCCEEEEEEeCCC
Confidence 5555668899999653 3566777778777777899999999985
No 24
>PRK05787 cobalt-precorrin-6Y C(5)-methyltransferase; Validated
Probab=99.97 E-value=5.8e-30 Score=224.29 Aligned_cols=178 Identities=21% Similarity=0.173 Sum_probs=133.7
Q ss_pred eEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhcc-CCCcEEecCCCCHHHHHHHHHHHHhCCCeEEEEc
Q 024054 82 GLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYN-IKTPLLSYHKFNESQREQTVLNRLKQGEIVALIS 160 (273)
Q Consensus 82 ~l~iVGvGPGdpdlLTlrA~~~L~~ADvV~~~~~~~~~~ll~~~~-~~~~~i~~~~~~~~~~~~~ii~~l~~G~~Vv~LS 160 (273)
+||+||+|||||++||+||+++|++||+|++++ +. .++++.+. .++..+.. +.++..+.+. ...+|++|+++
T Consensus 1 ~l~vVG~GpG~~~~lT~~a~~~l~~advv~~~~-~~-~~~~~~~~~~~~~~~~~---~~~~~~~~i~-~~~~g~~V~~l- 73 (210)
T PRK05787 1 MIYIVGIGPGDPEYLTLKALEAIRKADVVVGSK-RV-LELFPELIDGEAFVLTA---GLRDLLEWLE-LAAKGKNVVVL- 73 (210)
T ss_pred CEEEEEeCCCChHHhhHHHHHHHHhCCEEEEcH-hH-HHHHHHhccCccEEecC---CHHHHHHHHH-HhhCCCcEEEE-
Confidence 489999999999999999999999999999964 33 23344443 23333322 2334445544 56789999999
Q ss_pred cCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCccEEEEEEeCCCCcchH-HHHHhhhCCCCeEEEEe
Q 024054 161 DAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARSRT-ERLMLSANEVKTQIFYV 239 (273)
Q Consensus 161 ~~GDP~iys~~~~l~~~l~~~gi~vevIPGISS~~aAaA~lG~pl~~~~~ig~lp~~~~~r~-~~L~~l~~~~~tlVl~~ 239 (273)
.+|||++||.+..+.+.+. .+++++++|||||+++|+|++|+||+++.++ +.|+++.. +.+..+++.+.++++|+
T Consensus 74 ~~GDP~~~~~~~~~~~~~~-~~~~veviPGiSs~~aaaa~~g~~l~~~~~i---s~~~~~~~~~~l~~~~~~~~~~v~l~ 149 (210)
T PRK05787 74 STGDPLFSGLGKLLKVRRA-VAEDVEVIPGISSVQYAAARLGIDMNDVVFT---TSHGRGPNFEELEDLLKNGRKVIMLP 149 (210)
T ss_pred ecCCccccccHHHHHHHhc-cCCCeEEEcCHHHHHHHHHHhCCCHHHcEEE---eecCCCcchHHHHHHHHcCCeEEEEc
Confidence 5999999998877776654 3489999999999999999999999998876 66664321 34566665566777777
Q ss_pred C-cccHHHHHHHHhhhcCCCcEEEeEehhhhh
Q 024054 240 P-PHKLLQFLEETSLLFGYSRYIRYLKILFLF 270 (273)
Q Consensus 240 ~-~~~l~~i~~~L~e~~~~d~~v~v~~~l~~~ 270 (273)
. .+++.++.+.|.+....++++++++++|.-
T Consensus 150 ~~~~~~~~i~~~L~~~g~~~~~~~v~~~l~~~ 181 (210)
T PRK05787 150 DPRFGPKEIAAELLERGKLERRIVVGENLSYP 181 (210)
T ss_pred CCCCCHHHHHHHHHhCCCCCcEEEEEEeCCCC
Confidence 4 458889988888732468999999999863
No 25
>TIGR02467 CbiE precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit. This model recognizes the CbiE methylase which is responsible, in part (along with CbiT), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiT subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.97 E-value=1.1e-29 Score=222.59 Aligned_cols=175 Identities=20% Similarity=0.184 Sum_probs=132.4
Q ss_pred EEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhc-cCCCcEEecCCCCHHHHHHHHHHHHhCCCeEEEEccCC
Q 024054 85 LVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYY-NIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDAG 163 (273)
Q Consensus 85 iVGvGPGdpdlLTlrA~~~L~~ADvV~~~~~~~~~~ll~~~-~~~~~~i~~~~~~~~~~~~~ii~~l~~G~~Vv~LS~~G 163 (273)
+||+|||||++||+||+++|++||+|+++. +.. +.+..+ +.+...+. ...+.++..+.+.+.++ |++|+++ .+|
T Consensus 1 iVG~GpG~~~~lT~~a~~~L~~advv~~~~-~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~-g~~vv~l-~~G 75 (204)
T TIGR02467 1 VVGIGPGGPELLTPAAIEAIRKADLVVGGE-RHL-ELLAELIGEKREIIL-TYKDLDELLEFIAATRK-EKRVVVL-ASG 75 (204)
T ss_pred CEEeCCCChhhcCHHHHHHHHhCCEEEech-hhH-HHHhhhcCCceEecc-CcCCHHHHHHHHHHhcC-CCCEEEE-ecC
Confidence 699999999999999999999999999974 333 333333 22222222 22356677777777666 8999999 599
Q ss_pred CCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCccEEEEEEeCCCCcchHH-HHHhhhCCCCeEEEEeCc-
Q 024054 164 TPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARSRTE-RLMLSANEVKTQIFYVPP- 241 (273)
Q Consensus 164 DP~iys~~~~l~~~l~~~gi~vevIPGISS~~aAaA~lG~pl~~~~~ig~lp~~~~~r~~-~L~~l~~~~~tlVl~~~~- 241 (273)
||++||++.++++.+.+ .+++++|||||+++|+|++|+||+++.++ +.|+++... .+..+... +++++|+.+
T Consensus 76 DP~~~~~~~~l~~~~~~--~~v~iiPGiSs~~~a~a~~g~~l~~~~~i---s~~~~~~~~~~~~~l~~~-~~~vvl~~~~ 149 (204)
T TIGR02467 76 DPLFYGIGRTLAERLGK--ERLEIIPGISSVQYAFARLGLPWQDAVVI---SLHGRELDELLLALLRGH-RKVAVLTDPR 149 (204)
T ss_pred CCcccccHHHHHHhCCC--CcEEEeCChHHHHHHHHHcCCChhhCeEE---EeeCCCCcHHHHHHHhcC-CcEEEEeCCC
Confidence 99999999999998865 37999999999999999999999998887 555542122 34445544 455555554
Q ss_pred ccHHHHHHHHhh-hcCCCcEEEeEehhhhh
Q 024054 242 HKLLQFLEETSL-LFGYSRYIRYLKILFLF 270 (273)
Q Consensus 242 ~~l~~i~~~L~e-~~~~d~~v~v~~~l~~~ 270 (273)
++..++.+.|.+ ++++.++++++++++.=
T Consensus 150 ~~~~~i~~~L~~~g~~~~~~v~v~~~l~~~ 179 (204)
T TIGR02467 150 NGPAEIARELIELGIGGSYELTVGENLGYE 179 (204)
T ss_pred CCHHHHHHHHHHCCCCCCeEEEEEcccCCC
Confidence 779999999987 67766699999999863
No 26
>PRK08284 precorrin 6A synthase; Provisional
Probab=99.96 E-value=2.4e-28 Score=221.77 Aligned_cols=177 Identities=14% Similarity=0.132 Sum_probs=127.3
Q ss_pred CeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCC--------HHHHhhcc--CCCcEEec--CCCCH---------
Q 024054 81 PGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHS--------GKLLQYYN--IKTPLLSY--HKFNE--------- 139 (273)
Q Consensus 81 g~l~iVGvGPGdpdlLTlrA~~~L~~ADvV~~~~~~~~--------~~ll~~~~--~~~~~i~~--~~~~~--------- 139 (273)
.+||+||+||||||+||+||+++|++||+|+++++... .++++.+. ++++++.+ ++.+.
T Consensus 2 ~kly~VGvGPGDPeLLTlkA~r~L~~advV~~p~~~~~~~~la~~a~~iv~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~ 81 (253)
T PRK08284 2 RRLLLIGIGAGDPDHLTLQAIKALNRADVFFVPDKGADKDDLVALRREICARHITGPGYRVVEFDDPVRDRAPDDYRAAV 81 (253)
T ss_pred cEEEEEEecCCChhHhhHHHHHHHHhCCEEEEECCCCCchhHHHHHHHHHHHHhcCCCceEEecCCCCcccchhhhhhhh
Confidence 47999999999999999999999999999999865322 23444332 34555443 33221
Q ss_pred --------HHHHHHHHHHHhCCCeEEEEccCCCCCCCchHHHHHHHhhhC---CCCEEEEccchHHHHHHHhCCCCCccE
Q 024054 140 --------SQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDE---KIPVVPIPGASAFVAALSASGLATDEF 208 (273)
Q Consensus 140 --------~~~~~~ii~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~---gi~vevIPGISS~~aAaA~lG~pl~~~ 208 (273)
+...+.|.+.+++|++|+++ ..|||++||++.++.+.+.+. |+++|+||||||+++++|++|+||++.
T Consensus 82 ~~~~~~~~~~~~~~i~~~l~~g~~Vv~l-~~GDP~~ys~~~~l~~~l~~~~~~~i~vevVPGISS~~aaaA~lg~pl~~~ 160 (253)
T PRK08284 82 DDWHAARAALYERLIAEELPDGGTGAFL-VWGDPSLYDSTLRILERVRARGRVAFDYEVIPGITSVQALAARHRIPLNRI 160 (253)
T ss_pred hhHHHHHHHHHHHHHHHHHhCCCcEEEE-eCCCcchhhHHHHHHHHHHhhccCCCcEEEECChhHHHHHHHHcCCChhcC
Confidence 11135677888999999999 699999999999999999864 899999999999999999999999864
Q ss_pred E-EEEEeCCCCcchHHHHHhhhCCCCeEEEEeCcccHHHHHHHHhhhcCCCcEEEeEehhhh
Q 024054 209 T-FVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRYIRYLKILFL 269 (273)
Q Consensus 209 ~-~ig~lp~~~~~r~~~L~~l~~~~~tlVl~~~~~~l~~i~~~L~e~~~~d~~v~v~~~l~~ 269 (273)
. -+.++|.+. .. ..+.+..+++|+|+.+++..+. |. ..+.++++++|++.
T Consensus 161 ~~~l~ii~g~~---l~--~~l~~~~~~vvv~k~~~~~~~~---L~---~~~~~v~v~e~l~~ 211 (253)
T PRK08284 161 GEPVHITTGRR---LA--EGWPAGVDNVVVMLDGECSFRR---LD---DPDLEIWWGAYLGT 211 (253)
T ss_pred CceEEEEecCc---hH--HHHHhcCCcEEEEECCcCCHHH---Hc---CCCCEEEEEecCCC
Confidence 1 122234431 11 1223445677777776633332 22 24568999999875
No 27
>COG2241 CobL Precorrin-6B methylase 1 [Coenzyme metabolism]
Probab=99.96 E-value=1.9e-28 Score=215.84 Aligned_cols=174 Identities=20% Similarity=0.224 Sum_probs=131.9
Q ss_pred eEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhccC--CCcEEecCCCCHHHHHHHHHHHHhCCCeEEEE
Q 024054 82 GLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNI--KTPLLSYHKFNESQREQTVLNRLKQGEIVALI 159 (273)
Q Consensus 82 ~l~iVGvGPGdpdlLTlrA~~~L~~ADvV~~~~~~~~~~ll~~~~~--~~~~i~~~~~~~~~~~~~ii~~l~~G~~Vv~L 159 (273)
+|++||+||||+++||.+|+++|++||+|++.. + .++.+.. .++.+.+....+.+..+.+....+ |++|++|
T Consensus 1 ~I~vVGiGp~~~~~Lt~~A~~~I~~A~vV~G~k-r----~L~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~-g~~v~VL 74 (210)
T COG2241 1 MITVVGIGPGGPEGLTLAAIEAIRRADVVAGSK-R----HLELLPPLIKAERIIWPYPFDAESLEEILAERK-GRDVVVL 74 (210)
T ss_pred CEEEEEeCCCChhhhcHHHHHHHHhCCEEeecH-H----HHHhhhccccceEEEeccccchHHHHHHHHHhC-CCCeEEE
Confidence 489999999999999999999999999999964 2 3444432 234444433233334444444433 8999999
Q ss_pred ccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCccEEEEEEeCCCCcchHHHHHhhhCCCCeEEEEe
Q 024054 160 SDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYV 239 (273)
Q Consensus 160 S~~GDP~iys~~~~l~~~l~~~gi~vevIPGISS~~aAaA~lG~pl~~~~~ig~lp~~~~~r~~~L~~l~~~~~tlVl~~ 239 (273)
.+|||++||.+..+.+.+.. -++++||||||+|+|+|++|++|+++.++ +.|++. .+.+..+...+..+++..
T Consensus 75 -asGDP~f~G~g~~l~~~~~~--~~v~iIPgiSS~q~a~ARlg~~~~~~~~i---slHgr~-~~~l~~~~~~~~~~vil~ 147 (210)
T COG2241 75 -ASGDPLFSGVGRLLRRKFSC--EEVEIIPGISSVQLAAARLGWPLQDTEVI---SLHGRP-VELLRPLLENGRRLVILT 147 (210)
T ss_pred -ecCCcchhhhHHHHHHhcCc--cceEEecChhHHHHHHHHhCCChHHeEEE---EecCCC-HHHHHHHHhCCceEEEeC
Confidence 69999999999999887765 46899999999999999999999999988 888754 345665555555555554
Q ss_pred Ccc-cHHHHHHHHhh-hcCCCcEEEeEehhhh
Q 024054 240 PPH-KLLQFLEETSL-LFGYSRYIRYLKILFL 269 (273)
Q Consensus 240 ~~~-~l~~i~~~L~e-~~~~d~~v~v~~~l~~ 269 (273)
+.. ...++.+.|.+ |++ +.+++++|||+-
T Consensus 148 ~~~~~P~~IA~~L~~~G~~-~~~~~VlE~L~~ 178 (210)
T COG2241 148 PDDFGPAEIAKLLTENGIG-DSRVTVLENLGY 178 (210)
T ss_pred CCCCCHHHHHHHHHhCCCC-CceEEEEcccCC
Confidence 444 47777777877 676 899999999973
No 28
>TIGR00522 dph5 diphthine synthase. This protein participates in the modification of a specific His of elongation factor 2 of eukarotes and Archaea to diphthamide. The protein was characterized in Saccharomyces cerevisiae and designated DPH5.
Probab=99.96 E-value=4.6e-28 Score=220.29 Aligned_cols=184 Identities=20% Similarity=0.179 Sum_probs=134.3
Q ss_pred eEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCC------HHHHhhccCCCcEEecCCCCH-HHHHHHHHHHHhCCC
Q 024054 82 GLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHS------GKLLQYYNIKTPLLSYHKFNE-SQREQTVLNRLKQGE 154 (273)
Q Consensus 82 ~l~iVGvGPGdpdlLTlrA~~~L~~ADvV~~~~~~~~------~~ll~~~~~~~~~i~~~~~~~-~~~~~~ii~~l~~G~ 154 (273)
+||+||+|||||++||+||+++|++||+|+++. +.+ ...++.+. +++..... .++ ++..+.+++.+++ +
T Consensus 1 ~l~~VG~GPGd~~llTl~a~~~L~~advV~~~~-~~s~l~~~~~~~~~~~~-~~~~~~~~-~~~~e~~~~~ii~~~~~-~ 76 (257)
T TIGR00522 1 MLYLIGLGLYDENDISVKGLEAIKKADEVYAEF-YTSKLLGSSIEEIEEFF-GKRVVVLE-RSDVEENSFRLIERAKS-K 76 (257)
T ss_pred CEEEEECCCCChhhhCHHHHHHHHcCCEEEEec-cchhhccccHHHHHHHh-CCcccccC-HHHHHHHHHHHHHHhcC-C
Confidence 489999999999999999999999999999963 222 11122221 22222111 122 2345677777654 8
Q ss_pred eEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCccE---EEEEEeCCCCcch---HHHHHhh
Q 024054 155 IVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEF---TFVGFLPKHARSR---TERLMLS 228 (273)
Q Consensus 155 ~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~vevIPGISS~~aAaA~lG~pl~~~---~~ig~lp~~~~~r---~~~L~~l 228 (273)
+|+++ .+|||++|+++.++++++.+.|+++++||||||+++|+|++|+|+..+ .-+.+.+.|++.. ...++++
T Consensus 77 ~Vv~l-~~GDP~i~~~~~~l~~~l~~~~i~vevIPGiSs~~aaaa~~g~~lt~~g~~~~v~~~s~~~~~~~~~~~~~~~l 155 (257)
T TIGR00522 77 DVALL-VAGDPMVATTHTDLKLEAKRKGIETRIIHGASISSAVCGLTGLQLYKFGKTATIVFFTDNYRPQTPYNVIKENR 155 (257)
T ss_pred CEEEE-ECCcCcccCCHHHHHHHHHHCCCeEEEECcHhHHHHHHHHcCCCcccCCCcEEEEEecCCcCCCCHHHHHHHHH
Confidence 89999 599999999999999999999999999999999999999999999843 2233447776421 2456777
Q ss_pred hCCCCeEEEEeCcc-------------cHHHHHHHHhh-hcCCCcEEEeEehhhhh
Q 024054 229 ANEVKTQIFYVPPH-------------KLLQFLEETSL-LFGYSRYIRYLKILFLF 270 (273)
Q Consensus 229 ~~~~~tlVl~~~~~-------------~l~~i~~~L~e-~~~~d~~v~v~~~l~~~ 270 (273)
.+...|+|||+... ++.++.+.|.+ +++++++|++++|++.=
T Consensus 156 ~~~~~Tlvll~~~~~~~~~M~~~~~~~~l~~~~~~l~~~g~~~~tpv~vv~~~~~~ 211 (257)
T TIGR00522 156 KIGLHTLVLLDIHPKENRAMTIGEGLENLLEEEEKRKTGAITPDTYAVVIARAGSG 211 (257)
T ss_pred hcCCCcEEEEecccCcccccCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEEECCCC
Confidence 77778999994333 23334445555 57889999999998753
No 29
>TIGR02434 CobF precorrin-6A synthase (deacetylating). This model identifies CobF in High GC gram positive, alphaproteobacteria and pseudomonas-related species.
Probab=99.96 E-value=8.1e-28 Score=217.83 Aligned_cols=174 Identities=16% Similarity=0.145 Sum_probs=127.0
Q ss_pred eEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCC--------HHHHhhcc--CCCcEEe--cCCCCH----------
Q 024054 82 GLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHS--------GKLLQYYN--IKTPLLS--YHKFNE---------- 139 (273)
Q Consensus 82 ~l~iVGvGPGdpdlLTlrA~~~L~~ADvV~~~~~~~~--------~~ll~~~~--~~~~~i~--~~~~~~---------- 139 (273)
+||+||+||||||+||+||+++|++||+|+++.+... .++++.+. ++++++. ++|...
T Consensus 2 ~l~~VG~GPGDPeLLTlkA~r~L~~AdvV~~p~~~~~~~~l~~~a~~i~~~~~~~~~~~i~~~~~pm~~~~~~~y~~~~~ 81 (249)
T TIGR02434 2 TILLIGIGAGDPEQLTLQAVDALNHADVFFVLDKGEQKSDLVALRREICARYVTAPGYRIVEVDDPERDAGADDYRAAVD 81 (249)
T ss_pred EEEEEEeCCCChHHhHHHHHHHHHhCCEEEEECCCCCchhHHHHHHHHHHHHhCCCCcEEEEecCCCcCCccchhhhhHH
Confidence 6999999999999999999999999999999744332 23333222 2334443 344211
Q ss_pred -------HHHHHHHHHHHhCCCeEEEEccCCCCCCCchHHHHHHHhhh---CCCCEEEEccchHHHHHHHhCCCCCccEE
Q 024054 140 -------SQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVD---EKIPVVPIPGASAFVAALSASGLATDEFT 209 (273)
Q Consensus 140 -------~~~~~~ii~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~---~gi~vevIPGISS~~aAaA~lG~pl~~~~ 209 (273)
++.++.|.+.+++|++|+++ .+|||++||++.++.+.+.+ .++++++||||||+++++|++|+||++..
T Consensus 82 ~~~~~~~~~~a~~i~~~~~~g~~Vv~L-~~GDP~~yst~~~l~~~l~~~~~~~~~vevVPGISS~~aaaA~lg~pl~~~~ 160 (249)
T TIGR02434 82 DWHAQRADIWAQAIAEELGDDGTGAFL-VWGDPSLYDSTLRILERLRALGGVPFDYEVIPGITSVQALTARHRIPLNRIG 160 (249)
T ss_pred HhhhhHHHHHHHHHHHHHhCCCcEEEE-eCCCchHhhhHHHHHHHHHHhcCCCCCEEEECCHHHHHHHHHHhCCCcccCC
Confidence 13456777888999999999 69999999999999998876 46899999999999999999999998541
Q ss_pred --EEEEeCCCCcchHHHHHhh-hCCCCeEEEEeCcccHHHHHHHHhhhcCCCcEEEeEehhhh
Q 024054 210 --FVGFLPKHARSRTERLMLS-ANEVKTQIFYVPPHKLLQFLEETSLLFGYSRYIRYLKILFL 269 (273)
Q Consensus 210 --~ig~lp~~~~~r~~~L~~l-~~~~~tlVl~~~~~~l~~i~~~L~e~~~~d~~v~v~~~l~~ 269 (273)
+. +++.+ . +... ....+++++|+...+..+.+ .+ .+.++++++|+|.
T Consensus 161 ~~l~-v~~g~--~----l~~~~l~~~~~~vilk~~~~~~~~l---~~---~~~~~~v~e~lg~ 210 (249)
T TIGR02434 161 EPVQ-ITTGR--R----LAEGGFPEGDTVVVMLDGEQAFQRV---DP---EDIDIYWGAYLGT 210 (249)
T ss_pred ceEE-EEecc--c----hhhccccCCCeEEEEECCccCHHHh---cC---CCCEEEEEEeCCC
Confidence 22 22432 1 2222 34567888888877734322 22 3669999999985
No 30
>PRK04160 diphthine synthase; Provisional
Probab=99.95 E-value=3e-26 Score=208.14 Aligned_cols=184 Identities=20% Similarity=0.184 Sum_probs=122.3
Q ss_pred eEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCC------HHHHhhccCCCcEEecCCCCHHHHHHHHH-HHHhCCC
Q 024054 82 GLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHS------GKLLQYYNIKTPLLSYHKFNESQREQTVL-NRLKQGE 154 (273)
Q Consensus 82 ~l~iVGvGPGdpdlLTlrA~~~L~~ADvV~~~~~~~~------~~ll~~~~~~~~~i~~~~~~~~~~~~~ii-~~l~~G~ 154 (273)
+||+||+||||||+||+||+++|++||+|++++. .+ ...+..+. +.+.+.......++..+.++ +..+ ++
T Consensus 1 ~l~vVG~GpG~pd~lT~~a~~~L~~advv~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 77 (258)
T PRK04160 1 MLYFIGLGLYDERDITLKGLEALRNADKVYAEFY-TSILMGTTIEKLEELI-GKEIIVLDREDVEQESEKIILEEAK-EK 77 (258)
T ss_pred CEEEEECCCCChhhhCHHHHHHHHcCCEEEEecc-cCccccccHHHHHHHh-CCceeecCHHHHHHHHHHHHHHHHc-CC
Confidence 4899999999999999999999999999999632 11 11222221 12222221112234445454 4444 58
Q ss_pred eEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCccEEEEEEeCCCC------cchHHHHHhh
Q 024054 155 IVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHA------RSRTERLMLS 228 (273)
Q Consensus 155 ~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~vevIPGISS~~aAaA~lG~pl~~~~~ig~lp~~~------~~r~~~L~~l 228 (273)
+|+++ .+|||++|+++.++++.+++.|++++++|||||+++|+|++|++...+-....++.+. +.....++++
T Consensus 78 ~Vv~L-~sGDP~~ys~~~~l~~~l~~~~~~veviPGISS~~aaaa~~g~~~~~~g~~~s~~~~~~~~~~~~~~~~i~~~~ 156 (258)
T PRK04160 78 NVAFL-TAGDPMVATTHVDLRLEAKKRGIEVRVIHGVSIYSAAISLTGLQNYKFGKSVTVPFPYGNFFPESPYDVIKDNL 156 (258)
T ss_pred CEEEE-eCCCCccccCHHHHHHHHHHCCCcEEEECChhHHHHHHHHhCCCcccCCceEEEccCcCCcCCCCHHHHHHHHH
Confidence 99999 5999999999999999999999999999999999999999999976541100011111 0112234556
Q ss_pred hCCCCeEEEEe--------CcccHHHHHHH----Hhhh-cCCCcEEEeEehhhh
Q 024054 229 ANEVKTQIFYV--------PPHKLLQFLEE----TSLL-FGYSRYIRYLKILFL 269 (273)
Q Consensus 229 ~~~~~tlVl~~--------~~~~l~~i~~~----L~e~-~~~d~~v~v~~~l~~ 269 (273)
.+...+++++. +++...+.+.+ |.++ +++++++++++|++.
T Consensus 157 ~~~~~~~vll~~~~~~~~~~~~~~~~~L~~~~~~l~~g~~~~~~~v~V~e~l~~ 210 (258)
T PRK04160 157 ERGLHTLVLLDIKADGRYMTANEALELLLELEEKRGEGVISEDTLAVVVARAGS 210 (258)
T ss_pred hcCCCcEEEEEeccCCcccCHHHHHHHHHHHHHHhcccccCCCCEEEEEEecCC
Confidence 66667888864 22223333322 2232 567999999999985
No 31
>PTZ00175 diphthine synthase; Provisional
Probab=99.94 E-value=9e-26 Score=206.63 Aligned_cols=183 Identities=21% Similarity=0.253 Sum_probs=134.5
Q ss_pred eEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCC------HHHHhhccCCCcEEecCCCCHHHHHHHHHHHHhCCCe
Q 024054 82 GLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHS------GKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEI 155 (273)
Q Consensus 82 ~l~iVGvGPGdpdlLTlrA~~~L~~ADvV~~~~~~~~------~~ll~~~~~~~~~i~~~~~~~~~~~~~ii~~l~~G~~ 155 (273)
+||+||+|||||++||+||+++|++||+|+++. +++ .+.+..+. +++.+.......++..+.+++.++ +++
T Consensus 2 mlylVG~GpGdp~lLTlkal~~L~~ADvV~~d~-~ts~l~~~~~~~l~~~~-gk~~~~~~r~~~e~~~~~ii~~a~-~~~ 78 (270)
T PTZ00175 2 MLYIIGLGLGDEKDITVKGLEAVKSADVVYLES-YTSILINSNKEKLEEFY-GKPVIEADREMVEEGCDEILEEAK-EKN 78 (270)
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHhCCEEEEec-ccchhccCCHHHHHHhc-CCeeEecCccCHHHHHHHHHHHhC-CCC
Confidence 699999999999999999999999999999964 322 12222221 233333332233344566777776 688
Q ss_pred EEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCccE---EEEEEeCCCCcc---hHHHHHhhh
Q 024054 156 VALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEF---TFVGFLPKHARS---RTERLMLSA 229 (273)
Q Consensus 156 Vv~LS~~GDP~iys~~~~l~~~l~~~gi~vevIPGISS~~aAaA~lG~pl~~~---~~ig~lp~~~~~---r~~~L~~l~ 229 (273)
|+++ ..|||++|+++.+++.++++.|+++++|||+|+++++ +.+|++.+.| .-+.|.+.|+.. ....+++++
T Consensus 79 Vv~L-~~GDP~i~~t~~~l~~~~~~~gi~vevIPGvSi~sA~-~~~Gl~~~~fg~~~sv~~~t~~~~~~s~~~~i~~n~~ 156 (270)
T PTZ00175 79 VAFL-VVGDPFCATTHTDLYLRAKKKGIEVEVIHNASIMNAI-GCTGLQLYRFGETVSIPFFTETWKPDSFYDKIKANRD 156 (270)
T ss_pred EEEE-ECCCCCccCCHHHHHHHHHHCCCcEEEECCcCHHHHH-hhcCCCcCCCCceEEEEEEeCCCCCCChhHHHHHHHH
Confidence 9999 5999999999999999999999999999999977666 7799999854 122344566542 124678888
Q ss_pred CCCCeEEE------------------------EeC----cccHHHHHHHHhh-hcCCCcEEEeEehhhh
Q 024054 230 NEVKTQIF------------------------YVP----PHKLLQFLEETSL-LFGYSRYIRYLKILFL 269 (273)
Q Consensus 230 ~~~~tlVl------------------------~~~----~~~l~~i~~~L~e-~~~~d~~v~v~~~l~~ 269 (273)
+...|+++ ||+ .+++.++.+.+.+ +++++++++++.++|-
T Consensus 157 ~glhTl~lldi~~~~~~~~~~~~~~~~~~~~~~M~~~~a~~~l~~i~~~~~~~~~~~~t~~v~v~r~g~ 225 (270)
T PTZ00175 157 NGLHTLCLLDIKVKERSVENLMKGRKIYEPPRYMTINQAIEQLLEVEEKKGGGVIAEDTLVVGVARVGS 225 (270)
T ss_pred cCCceEEEEeeeccccchhhhhccccccCCCcCCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEEECCC
Confidence 88899999 777 3344555555555 5788999999988874
No 32
>KOG1527 consensus Uroporphyrin III methyltransferase [Coenzyme transport and metabolism]
Probab=99.94 E-value=4.8e-26 Score=210.85 Aligned_cols=185 Identities=22% Similarity=0.239 Sum_probs=154.3
Q ss_pred CeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhccCCCcEEec---C---CCCHHHHHHHHHHHHhCCC
Q 024054 81 PGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSY---H---KFNESQREQTVLNRLKQGE 154 (273)
Q Consensus 81 g~l~iVGvGPGdpdlLTlrA~~~L~~ADvV~~~~~~~~~~ll~~~~~~~~~i~~---~---~~~~~~~~~~ii~~l~~G~ 154 (273)
|.||+||.|||+|++||++|+++|++||++++ |+.++..+++.+.++.+.+.. + +..++|..+...+.+.+|.
T Consensus 256 G~i~LvGsGPGsp~lLT~~A~~~I~sAD~~La-DkLVp~avL~Lipp~t~lfia~KfpGna~raQ~Elh~~~l~~l~~G~ 334 (506)
T KOG1527|consen 256 GDIYLVGSGPGSPELLTLKAVRVIQSADLLLA-DKLVPNAVLELIPPDTRLFIAGKFPGNASRAQEELHELLLNFLEAGA 334 (506)
T ss_pred CcEEEEccCCCChhheeHHHHHHHhhcceehh-hhcccHHHHhhcCCCCceEEeecCCCchhHHHHHHHHHHHHHHhCCC
Confidence 89999999999999999999999999999999 578999999999888886532 2 1235677788889999999
Q ss_pred eEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCcc--E-EEEEEeCCCCcch-HHHHHhhhC
Q 024054 155 IVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDE--F-TFVGFLPKHARSR-TERLMLSAN 230 (273)
Q Consensus 155 ~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~vevIPGISS~~aAaA~lG~pl~~--~-~~ig~lp~~~~~r-~~~L~~l~~ 230 (273)
.|+++ +.|||.+||+|.+....+.+.|+...|+|||||..++++.+|+|++. + .-+-+.+.+++.. ...+.+. -
T Consensus 335 ~VVRL-KqGDPyifGRGGEE~~Ff~qhGy~p~ViPGIssal~~~~~agIP~ThRgvAdqvl~cTGtgrKG~~p~ip~f-v 412 (506)
T KOG1527|consen 335 TVVRL-KQGDPYIFGRGGEEMDFFQQHGYRPQVIPGISSALGIAAEAGIPLTHRGVADQVLFCTGTGRKGGTPAIPAF-V 412 (506)
T ss_pred EEEEe-cCCCceeecCCchhhhhHHhCCceeEeccchhhhhhhhHhcCCCcccccccceEEEEeccCCCCCCCCcccc-C
Confidence 99999 89999999999999999999999999999999999999999999972 1 1111346665421 1122222 3
Q ss_pred CCCeEEEEeCcccHHHHHHHHhh-hcCCCcEEEeEehhh
Q 024054 231 EVKTQIFYVPPHKLLQFLEETSL-LFGYSRYIRYLKILF 268 (273)
Q Consensus 231 ~~~tlVl~~~~~~l~~i~~~L~e-~~~~d~~v~v~~~l~ 268 (273)
...|.||||.-++++-+++.|.+ |++.|+|++++++-.
T Consensus 413 p~~TtVflMaLhrl~~L~q~L~~hGwp~d~Pa~ivERgs 451 (506)
T KOG1527|consen 413 PDTTTVFLMALHRLPSLAQKLMDHGWPSDTPAVIVERGS 451 (506)
T ss_pred CCceeEeeehhcchHHHHHHHHhcCCCCCCCeeeEeccC
Confidence 46799999999999999999998 799999999998753
No 33
>COG1798 DPH5 Diphthamide biosynthesis methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=8.9e-16 Score=137.36 Aligned_cols=182 Identities=22% Similarity=0.198 Sum_probs=122.6
Q ss_pred eEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCH-------HHHhhccCCCcEEecCCCCHHHHHHHHHHHHhCCC
Q 024054 82 GLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSG-------KLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGE 154 (273)
Q Consensus 82 ~l~iVGvGPGdpdlLTlrA~~~L~~ADvV~~~~~~~~~-------~ll~~~~~~~~~i~~~~~~~~~~~~~ii~~l~~G~ 154 (273)
++|+||.|+.|..++|+++++++++||.|+.+ .+++. .+-+.+ +++++.....+-++.-+.|++.++++
T Consensus 1 mL~lVGlGL~d~~diTl~gleavr~~d~Vy~E-~YTS~~~~~~~e~le~~~--gkev~~~~R~dlE~~~~~il~~a~~~- 76 (260)
T COG1798 1 MLYLVGLGLYDEGDITLKGLEAVRKADRVYAE-FYTSILLGSNLEKLEELI--GKEVILLDREDLEENSRSILDRAKDK- 76 (260)
T ss_pred CeEEEEeccCccCceeHHHHHHHHhCCEEEEE-eeecccccchHHHHHHHh--CCceEeccHHHHhhcchhHHHHHhcC-
Confidence 48999999999999999999999999999996 45431 222223 35555443222222235677777665
Q ss_pred eEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCccEEEEEEeCCCCcc-----hHHHH-Hhh
Q 024054 155 IVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARS-----RTERL-MLS 228 (273)
Q Consensus 155 ~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~vevIPGISS~~aAaA~lG~pl~~~~~ig~lp~~~~~-----r~~~L-~~l 228 (273)
+|+++ ..|||++..+...|+-.++++|++++||||+|.+++++.+.|+....|--...+|.+++. .-+.+ ++.
T Consensus 77 ~Vall-~~GDpmvATTH~~L~~~A~~~Gi~v~vIh~~Si~~Aa~g~tGL~~YkFG~~vTip~~~~~~~p~s~yd~Ik~N~ 155 (260)
T COG1798 77 DVALL-VAGDPMVATTHVDLRIEAKRRGIEVRVIHGASIINAAIGLTGLQNYKFGKTVTLPFPSENFFPTSPYDVIKENL 155 (260)
T ss_pred CEEEE-ecCCcceehhHHHHHHHHHHcCCcEEEEcccHHHHHHhhhhhhheeccCCceEecccccCcCCCcHHHHHHHhh
Confidence 59999 599999999999999999999999999999999999999999998766111112333221 11222 344
Q ss_pred hCCCCeEEEEeCcc-----cHHHHHHHHhh--------hcCCCcEEEeEehhh
Q 024054 229 ANEVKTQIFYVPPH-----KLLQFLEETSL--------LFGYSRYIRYLKILF 268 (273)
Q Consensus 229 ~~~~~tlVl~~~~~-----~l~~i~~~L~e--------~~~~d~~v~v~~~l~ 268 (273)
...=.|+++++-.. ...+-++.|.+ .+.+++.+++.-++|
T Consensus 156 ~~GLHTl~lLDi~~~~r~Mt~~ea~~~LLe~e~~~~~~~~~~d~~~vvvaR~G 208 (260)
T COG1798 156 ERGLHTLVLLDIKEDERYMTANEALELLLEAEERRGRGVLTEDTLAVVVARAG 208 (260)
T ss_pred hcCccceEEEEecccccccCHHHHHHHHHHHHHHhcCCCcCCCceEEEEEecC
Confidence 44556888765322 12333443332 245777777766555
No 34
>KOG3123 consensus Diphthine synthase [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=7.4e-10 Score=97.32 Aligned_cols=182 Identities=21% Similarity=0.228 Sum_probs=117.7
Q ss_pred eEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCH------HHHhhccCCCcEEecCCCCHHHHHHHHHHHHhCCCe
Q 024054 82 GLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSG------KLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEI 155 (273)
Q Consensus 82 ~l~iVGvGPGdpdlLTlrA~~~L~~ADvV~~~~~~~~~------~ll~~~~~~~~~i~~~~~~~~~~~~~ii~~l~~G~~ 155 (273)
++|+||.|.||.++||+|+++++++|.-|+-+ .+++- .-++.+ -+++++-.+...-++..+.|++.+.+ .+
T Consensus 1 mlYlIGlGL~d~kDITlrGLeaVK~c~rVylE-aYTSil~~~l~~~lEk~-yGk~iilADRemvEq~sd~il~~ad~-~d 77 (272)
T KOG3123|consen 1 MLYLIGLGLGDEKDITLRGLEAVKKCARVYLE-AYTSILGVGLDATLEKF-YGKEIILADREMVEQESDKILDEADK-ED 77 (272)
T ss_pred CeEEEeccCCcccceehhhHHHHhhhheehHH-HHHHHHHhhhhHHHHHH-hCceeEeccHHHHHhhHHHHhhhhhh-cc
Confidence 48999999999999999999999999999885 34420 001111 12344322111112334556666544 58
Q ss_pred EEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCccE---EEEEEeCCCCcchHHHHHhhh---
Q 024054 156 VALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEF---TFVGFLPKHARSRTERLMLSA--- 229 (273)
Q Consensus 156 Vv~LS~~GDP~iys~~~~l~~~l~~~gi~vevIPGISS~~aAaA~lG~pl~~~---~~ig~lp~~~~~r~~~L~~l~--- 229 (273)
|+++ +.|||+...+...++-++++.|++|++|-..|- .-|..+.|+.+..| .-+.|....|+. +...+++.
T Consensus 78 Va~L-VVGdPfgATTHsDlvlRAk~~~ipv~vIHNASi-mNavG~CGLqlY~fGetVSiv~ftd~wrP-~SfydkI~~Nr 154 (272)
T KOG3123|consen 78 VAFL-VVGDPFGATTHSDLVLRAKELGIPVEVIHNASI-MNAVGCCGLQLYNFGETVSIVFFTDNWRP-ESFYDKIKENR 154 (272)
T ss_pred eEEE-EecCcccccchhhhheehhhcCCCeEEEechHH-HhhhccceeeeeccCcEEEEEEEccCcCc-hhHHHHHHHhh
Confidence 9999 689999999999999999999999999999974 55567788888755 222344555542 11222222
Q ss_pred -CCCCeEE-------------------EEeCccc--HHHHHHHHhh--------hcCCCcEEEeEehhhh
Q 024054 230 -NEVKTQI-------------------FYVPPHK--LLQFLEETSL--------LFGYSRYIRYLKILFL 269 (273)
Q Consensus 230 -~~~~tlV-------------------l~~~~~~--l~~i~~~L~e--------~~~~d~~v~v~~~l~~ 269 (273)
..-.|++ +|++|+- ..+.+++|.+ .+.+|++|+...++|-
T Consensus 155 ~~glHTLcLLDIkvkEqs~enl~rgrkiyeppRymsvn~a~~QlLei~e~~~~~~~~edT~~v~~~R~Gs 224 (272)
T KOG3123|consen 155 QLGLHTLCLLDIKVKEQSVENLARGRKIYEPPRYMSVNEAAEQLLEIEEKRGEPAYTEDTLCVAVARVGS 224 (272)
T ss_pred hcCceeEEEEEEeeccHHHHHHhccccccCCchhhhHHHHHHHHHHHHHhhCCCCcCCCceEEEEEecCC
Confidence 2223554 4455542 3455555543 2468999988877763
No 35
>COG3956 Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain [General function prediction only]
Probab=99.05 E-value=4.4e-09 Score=98.28 Aligned_cols=178 Identities=12% Similarity=0.121 Sum_probs=121.9
Q ss_pred CCCeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhccCCCcEEe-cC----CCCH-----HHHHHHHHH
Q 024054 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLS-YH----KFNE-----SQREQTVLN 148 (273)
Q Consensus 79 ~~g~l~iVGvGPGdpdlLTlrA~~~L~~ADvV~~~~~~~~~~ll~~~~~~~~~i~-~~----~~~~-----~~~~~~ii~ 148 (273)
|.++|++||.|+||.+.||+.-.++|.++|-+++- ++-+ .+++.+......+. |. .+.+ +.++..+.+
T Consensus 1 mah~ItvVGLG~g~~d~L~lGi~k~lknqd~ly~R-TkdH-PviE~l~~e~~~f~~fD~iYE~heqFe~VYd~I~~~Lve 78 (488)
T COG3956 1 MAHTITVVGLGAGDKDQLTLGIYKLLKNQDNLYVR-TKDH-PVIEELDEEGIKFSFFDDIYETHEQFEAVYDFIAADLVE 78 (488)
T ss_pred CCceEEEEeeCCCchhhcchHHHHHHhccceEEEe-cCCC-chHHHHHhhcceeeehhHHHhhhhhHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999994 4333 35555543322222 21 1111 346677777
Q ss_pred HHhCCCeEEEEccCCCCCCCchHHH-HHHHhhhCCCCEEEEccchHHHHHHHhCCCCCc-cEEEEEEeCCCCcchHHHHH
Q 024054 149 RLKQGEIVALISDAGTPGISDPGTE-LAKLCVDEKIPVVPIPGASAFVAALSASGLATD-EFTFVGFLPKHARSRTERLM 226 (273)
Q Consensus 149 ~l~~G~~Vv~LS~~GDP~iys~~~~-l~~~l~~~gi~vevIPGISS~~aAaA~lG~pl~-~~~~ig~lp~~~~~r~~~L~ 226 (273)
++++ +++++. +.|+|.+...... |++++.+.+++|.|.||.|-+.+.+..+.++.. .|.++.-.+. . .
T Consensus 79 aAke-kdIvYA-VPGHP~VAEktVqlL~e~~ek~ni~Vkilgg~SFiD~~fealkiDPveG~q~vDa~~l-----~---~ 148 (488)
T COG3956 79 AAKE-KDIVYA-VPGHPLVAEKTVQLLIEACEKENIKVKILGGQSFIDALFEALKIDPVEGFQIVDATDL-----S---N 148 (488)
T ss_pred hhcc-cceEEe-cCCCchhHHHHHHHHHHHHhccCceEEEeCcchhHHHHHHHhcCCcccCceEeccchh-----h---H
Confidence 7766 899999 7999999987655 556777789999999999999999999999876 4566611111 1 1
Q ss_pred hhhCCCCeEEEEeCccc--HHHHHHHHhhhcCCCcEEEeEehhh
Q 024054 227 LSANEVKTQIFYVPPHK--LLQFLEETSLLFGYSRYIRYLKILF 268 (273)
Q Consensus 227 ~l~~~~~tlVl~~~~~~--l~~i~~~L~e~~~~d~~v~v~~~l~ 268 (273)
..+.-+..+||...... ...+--.|.+-++.|.+|.+++-.|
T Consensus 149 ~il~vr~hivItQVY~~miAs~vKltLmE~ypDDyev~ivtaag 192 (488)
T COG3956 149 DILDVRLHIVITQVYDQMIASDVKLTLMEYYPDDYEVYIVTAAG 192 (488)
T ss_pred HHHhhhhceeehhHHHHHHHHhHHHHHHHhCCCCceEEEEEecc
Confidence 11222334555433222 1222234566789999999987554
No 36
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=90.87 E-value=11 Score=35.85 Aligned_cols=162 Identities=12% Similarity=0.091 Sum_probs=94.4
Q ss_pred HHHHhhCCEEEEcC-CCCC-HHHHhhccCCCcEEec-CCC-CHHHHHHHHHHHHhCCCeEEEEccCCCCCCCchHHHHHH
Q 024054 101 LRVLKSANVILSED-TRHS-GKLLQYYNIKTPLLSY-HKF-NESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAK 176 (273)
Q Consensus 101 ~~~L~~ADvV~~~~-~~~~-~~ll~~~~~~~~~i~~-~~~-~~~~~~~~ii~~l~~G~~Vv~LS~~GDP~iys~~~~l~~ 176 (273)
.+.+.++|+|+... +..+ +.....+...+.+++. +.+ +..+..+.+.+..+++..|++++..=||++++.-+-+.+
T Consensus 55 ~e~l~~iDVViIctPs~th~~~~~~~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vsvi~~GwDPG~~si~r~~~e 134 (324)
T TIGR01921 55 EKHLDDVDVLILCMGSATDIPEQAPYFAQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVSVISTGWDPGMFSINRVYGE 134 (324)
T ss_pred HHhccCCCEEEEcCCCccCHHHHHHHHHcCCCEEECCCcccCCHHHHHHHHHHHHHcCCEEEEECCCCcChHHHHHHHHh
Confidence 33457899997732 2222 2333334445555542 211 223455666666676567888864459999998887777
Q ss_pred HhhhCCCCEEEE-ccchHHHHHHHhCCCCCccEEEEEEeCCCCcchHHHHH------------hhhCCCCeEEEEeCccc
Q 024054 177 LCVDEKIPVVPI-PGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLM------------LSANEVKTQIFYVPPHK 243 (273)
Q Consensus 177 ~l~~~gi~vevI-PGISS~~aAaA~lG~pl~~~~~ig~lp~~~~~r~~~L~------------~l~~~~~tlVl~~~~~~ 243 (273)
.+.-+|..+... ||+|--..-+.+----..+.....+ |. ++.|. ..+..+...++.+....
T Consensus 135 a~lp~g~~yt~wG~g~s~ghs~a~~~~~Gv~~a~~~ti-p~-----~dal~~v~~Ge~~~l~~~~~h~r~~~vv~e~g~~ 208 (324)
T TIGR01921 135 AVLPKGQTYTFWGPGLSQGHSDAVRRIDGVKKAVQYTL-PS-----EDALEKARRGEAPELTGKQTHKRQCFVVLKDGAD 208 (324)
T ss_pred ccCCCCcceeccCCCcCchhhhhhcccCCcccceEEEE-eh-----HHHHHHHHcCCccccccccceeeeEEEEecCCCC
Confidence 776677766544 8888644444433222213232221 31 12222 22245677888888889
Q ss_pred HHHHHHHHhh--h-c-CCCcEEEeEehhh
Q 024054 244 LLQFLEETSL--L-F-GYSRYIRYLKILF 268 (273)
Q Consensus 244 l~~i~~~L~e--~-~-~~d~~v~v~~~l~ 268 (273)
.+++-+.++. . | +.++.|.+..+.-
T Consensus 209 ~~~v~~~i~~~p~yf~~~~t~v~~i~~~~ 237 (324)
T TIGR01921 209 HERVENEIRTMPDYFVGYETEVNFIDEAT 237 (324)
T ss_pred HHHHHHHHhhCcccccCCCcEEEEeChHH
Confidence 9999998885 2 2 4678887776653
No 37
>COG0391 Uncharacterized conserved protein [Function unknown]
Probab=65.98 E-value=54 Score=31.23 Aligned_cols=32 Identities=16% Similarity=0.193 Sum_probs=22.6
Q ss_pred CeEEEEecCCCCccchHHHHHHHHhhCCEEE-EcCC
Q 024054 81 PGLYLVATPIGNLEDITLRALRVLKSANVIL-SEDT 115 (273)
Q Consensus 81 g~l~iVGvGPGdpdlLTlrA~~~L~~ADvV~-~~~~ 115 (273)
-.|+++| |-+|. -+.+|+++|++||+|+ +|.+
T Consensus 167 ~~V~~~~--~~~~~-a~~eaveAI~~AD~IviGPgS 199 (323)
T COG0391 167 HRVRLEG--PEKPS-AAPEAVEAIKEADLIVIGPGS 199 (323)
T ss_pred eEEEEec--CCCCC-CCHHHHHHHHhCCEEEEcCCc
Confidence 3578887 43443 6789999999999555 5544
No 38
>TIGR01819 F420_cofD LPPG:FO 2-phospho-L-lactate transferase. This model represents LPPG:Fo 2-phospho-L-lactate transferase, which catalyses the fourth step in the biosynthesis of coenzyme F420, a flavin derivative found in methanogens, the Mycobacteria, and several other lineages. This enzyme is characterized so far in Methanococcus jannaschii but appears restricted to F420-containing species and is predicted to carry out the same function in these other species. The clade represented by this model is one of two major divisions of proteins in pfam model pfam01933.
Probab=62.89 E-value=34 Score=32.19 Aligned_cols=81 Identities=16% Similarity=0.207 Sum_probs=48.1
Q ss_pred eEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhccCCCcEEecCCCCHHHHHHHHHHHHhCCCeEEEEc-
Q 024054 82 GLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALIS- 160 (273)
Q Consensus 82 ~l~iVGvGPGdpdlLTlrA~~~L~~ADvV~~~~~~~~~~ll~~~~~~~~~i~~~~~~~~~~~~~ii~~l~~G~~Vv~LS- 160 (273)
.|++ .||-+ -.-+.+++++|++||+|+....- .+-.+.+. + .+..|.+++++ ..|+.+|
T Consensus 161 ~V~~--~g~e~-a~a~peal~AI~~AD~IIlGPgs----p~TSI~P~---L---------lVpgIreAL~~-a~vV~Vsp 220 (297)
T TIGR01819 161 DVDF--RGAEK-ASIAPKVLEAIRKEDNILIGPSN----PITSIGPI---L---------SLPGIREALRD-KKVVAVSP 220 (297)
T ss_pred EEEE--CCCCC-CCCCHHHHHHHHhCCEEEECCCc----cHHHhhhh---c---------CchhHHHHHHc-CCEEEEcc
Confidence 3444 45534 34789999999999977764331 12112111 1 12334556666 6777777
Q ss_pred cCCCCCCCchHHHHHHHhhhCCCCE
Q 024054 161 DAGTPGISDPGTELAKLCVDEKIPV 185 (273)
Q Consensus 161 ~~GDP~iys~~~~l~~~l~~~gi~v 185 (273)
..|+--+.|+...+.+. .|++.
T Consensus 221 iig~~~v~GpA~~~m~a---~g~e~ 242 (297)
T TIGR01819 221 IVGNAPVSGPAGKLMAA---VGVEV 242 (297)
T ss_pred CcCCCcCCChHHHHHHH---cCCCc
Confidence 45666788888887764 35554
No 39
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=60.76 E-value=25 Score=31.51 Aligned_cols=57 Identities=16% Similarity=0.102 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHH
Q 024054 139 ESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVA 196 (273)
Q Consensus 139 ~~~~~~~ii~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~vevIPGISS~~a 196 (273)
.++..+.+.+....+..-+.++ .|.|+++.-..++++++++.|+++.+...-+-...
T Consensus 58 ~~ei~~~i~~~~~~~~~~V~lT-GGEPll~~~l~~li~~l~~~g~~v~leTNGtl~~~ 114 (238)
T TIGR03365 58 AEEVWQELKALGGGTPLHVSLS-GGNPALQKPLGELIDLGKAKGYRFALETQGSVWQD 114 (238)
T ss_pred HHHHHHHHHHHhCCCCCeEEEe-CCchhhhHhHHHHHHHHHHCCCCEEEECCCCCcHH
Confidence 3455555544333334456664 89999997788999999999999988887775554
No 40
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=53.67 E-value=1.6e+02 Score=27.07 Aligned_cols=108 Identities=19% Similarity=0.149 Sum_probs=57.9
Q ss_pred eEEEEecCCCCccchHHHHHHHHh----hCCEEEEcCCCCCHH---HHhhccCCCcEEecC-----------CCCHHHHH
Q 024054 82 GLYLVATPIGNLEDITLRALRVLK----SANVILSEDTRHSGK---LLQYYNIKTPLLSYH-----------KFNESQRE 143 (273)
Q Consensus 82 ~l~iVGvGPGdpdlLTlrA~~~L~----~ADvV~~~~~~~~~~---ll~~~~~~~~~i~~~-----------~~~~~~~~ 143 (273)
++-+||.|- |--.-.+.++ ..|.++.+|+. .++ +.+.++.... ..++ .-..+...
T Consensus 2 ~vgiVGcGa-----IG~~l~e~v~~~~~~~e~v~v~D~~-~ek~~~~~~~~~~~~~-s~ide~~~~~DlvVEaAS~~Av~ 74 (255)
T COG1712 2 KVGIVGCGA-----IGKFLLELVRDGRVDFELVAVYDRD-EEKAKELEASVGRRCV-SDIDELIAEVDLVVEAASPEAVR 74 (255)
T ss_pred eEEEEeccH-----HHHHHHHHHhcCCcceeEEEEecCC-HHHHHHHHhhcCCCcc-ccHHHHhhccceeeeeCCHHHHH
Confidence 466777773 3344455555 67888888752 222 2222222111 0111 11234455
Q ss_pred HHHHHHHhCCCeEEEEccCC---CCCCCchHHHHHHHhhhCCCCEEEEccc-hHHHHHHHh
Q 024054 144 QTVLNRLKQGEIVALISDAG---TPGISDPGTELAKLCVDEKIPVVPIPGA-SAFVAALSA 200 (273)
Q Consensus 144 ~~ii~~l~~G~~Vv~LS~~G---DP~iys~~~~l~~~l~~~gi~vevIPGI-SS~~aAaA~ 200 (273)
+...+.+++|.++.++| .| ||.+.++ +.+.++..|-++.+.+|. -.+.+.+|.
T Consensus 75 e~~~~~L~~g~d~iV~S-VGALad~~l~er---l~~lak~~~~rv~~pSGAiGGlD~l~aa 131 (255)
T COG1712 75 EYVPKILKAGIDVIVMS-VGALADEGLRER---LRELAKCGGARVYLPSGAIGGLDALAAA 131 (255)
T ss_pred HHhHHHHhcCCCEEEEe-chhccChHHHHH---HHHHHhcCCcEEEecCccchhHHHHHHh
Confidence 66667789999999998 45 3333332 323334456788888885 344444443
No 41
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=53.58 E-value=37 Score=30.07 Aligned_cols=52 Identities=10% Similarity=0.008 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccch
Q 024054 139 ESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGAS 192 (273)
Q Consensus 139 ~~~~~~~ii~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~vevIPGIS 192 (273)
.+++.+.+.+.....+ -+.+ ..|+|+.......+++.++++|+++.+--+-+
T Consensus 58 ~~~I~~~i~~~~~~~~-~V~l-TGGEP~~~~~l~~Ll~~l~~~g~~~~lETngt 109 (212)
T COG0602 58 ADEILADIKSLGYKAR-GVSL-TGGEPLLQPNLLELLELLKRLGFRIALETNGT 109 (212)
T ss_pred HHHHHHHHHhcCCCcc-eEEE-eCCcCCCcccHHHHHHHHHhCCceEEecCCCC
Confidence 3444444433212223 3445 39999888778899999999998887776443
No 42
>COG0120 RpiA Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=48.67 E-value=68 Score=29.07 Aligned_cols=111 Identities=15% Similarity=0.143 Sum_probs=59.7
Q ss_pred CeEEEEecCCCCccchHHHHHH-HHh-hCCEEEEcCCCCCHHHHhhccCC------CcEE--ecCCCCH-----------
Q 024054 81 PGLYLVATPIGNLEDITLRALR-VLK-SANVILSEDTRHSGKLLQYYNIK------TPLL--SYHKFNE----------- 139 (273)
Q Consensus 81 g~l~iVGvGPGdpdlLTlrA~~-~L~-~ADvV~~~~~~~~~~ll~~~~~~------~~~i--~~~~~~~----------- 139 (273)
|++..+|+|- --.-..+++. ..+ +.++..++.+..+..+++.++.. .+.+ .++..++
T Consensus 21 gmviGlGTGS--T~~~fI~~Lg~~~~~e~~i~~V~TS~~t~~l~~~~GI~v~~l~~~~~lDl~iDGADEvd~~~~lIKGG 98 (227)
T COG0120 21 GMVIGLGTGS--TAAYFIEALGRRVKGELDIGGVPTSFQTEELARELGIPVSSLNEVDSLDLAIDGADEVDPNLNLIKGG 98 (227)
T ss_pred CCEEEEcCcH--HHHHHHHHHHHhhccCccEEEEeCCHHHHHHHHHcCCeecCccccCccceEeecccccCCCCCEEccC
Confidence 5565555554 3334444443 222 24778887665566666655431 1111 1111111
Q ss_pred --HHHHHHHHHHHhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchH-HHHHHHhCCCC
Q 024054 140 --SQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASA-FVAALSASGLA 204 (273)
Q Consensus 140 --~~~~~~ii~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~vevIPGISS-~~aAaA~lG~p 204 (273)
.=..|.|+... +.+.++++ |. +.+++.|-...++|||+|.--+ +.-....+|..
T Consensus 99 GgAl~rEKIva~~-ak~~IvIv-De---------sKlV~~LG~fplPVEVip~a~~~v~r~l~~~g~~ 155 (227)
T COG0120 99 GGALLREKIVASA-AKRFIVIV-DE---------SKLVEVLGKFPLPVEVIPFARSAVLRKLEKLGGK 155 (227)
T ss_pred hHHHHHHHHHHHh-cCeEEEEE-eC---------ccchhhcCCCCcCEEEchhHHHHHHHHHHHhCCC
Confidence 11235566554 34667776 63 4577888877899999998744 44444445554
No 43
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=48.52 E-value=1.7e+02 Score=28.10 Aligned_cols=188 Identities=14% Similarity=0.082 Sum_probs=92.5
Q ss_pred ccccccchhhhcccccccCCCChhhhhHhhhhcCCCCCCCCeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHH
Q 024054 41 SLSLYPKINYLLLCSCSQSQTSPDFSNLILEQSSKRGPLEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGK 120 (273)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~iVGvGPGdpdlLTlrA~~~L~~ADvV~~~~~~~~~~ 120 (273)
+|..++. ..+---.|+++..+..+...-..| -..+-++|+| ...++.++-.+++- |.++....+....+
T Consensus 136 iP~~~d~-~~aApllCaGiT~y~alk~~~~~p-------G~~V~I~G~G--GlGh~avQ~Aka~g-a~Via~~~~~~K~e 204 (339)
T COG1064 136 IPEGLDL-AEAAPLLCAGITTYRALKKANVKP-------GKWVAVVGAG--GLGHMAVQYAKAMG-AEVIAITRSEEKLE 204 (339)
T ss_pred CCCCCCh-hhhhhhhcCeeeEeeehhhcCCCC-------CCEEEEECCc--HHHHHHHHHHHHcC-CeEEEEeCChHHHH
Confidence 4444442 223345688888777776633333 2359999999 57888888888888 99999953322123
Q ss_pred HHhhccCCCcEEecCCCCHHHHHHHHHHHHhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchH--HHHHH
Q 024054 121 LLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASA--FVAAL 198 (273)
Q Consensus 121 ll~~~~~~~~~i~~~~~~~~~~~~~ii~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~vevIPGISS--~~aAa 198 (273)
+.+.++.+. ++... .++..+.+.+. -++++. ..| +-- ....++.++..|- +. +=|... .....
T Consensus 205 ~a~~lGAd~-~i~~~---~~~~~~~~~~~----~d~ii~-tv~-~~~---~~~~l~~l~~~G~-~v-~vG~~~~~~~~~~ 269 (339)
T COG1064 205 LAKKLGADH-VINSS---DSDALEAVKEI----ADAIID-TVG-PAT---LEPSLKALRRGGT-LV-LVGLPGGGPIPLL 269 (339)
T ss_pred HHHHhCCcE-EEEcC---CchhhHHhHhh----CcEEEE-CCC-hhh---HHHHHHHHhcCCE-EE-EECCCCCcccCCC
Confidence 344454321 22211 12223333222 466776 355 322 2334455555552 22 222221 00000
Q ss_pred HhCCCCCccEEEEEEeCCCCcchHHHHHhhhCCCCeEEE--EeCcccHHHHHHHHhhh
Q 024054 199 SASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIF--YVPPHKLLQFLEETSLL 254 (273)
Q Consensus 199 A~lG~pl~~~~~ig~lp~~~~~r~~~L~~l~~~~~tlVl--~~~~~~l~~i~~~L~e~ 254 (273)
....+=+.+..+.|.+.....+-++.++-.+++.-.-.+ .-+..++.+.++.|.++
T Consensus 270 ~~~~li~~~~~i~GS~~g~~~d~~e~l~f~~~g~Ikp~i~e~~~l~~in~A~~~m~~g 327 (339)
T COG1064 270 PAFLLILKEISIVGSLVGTRADLEEALDFAAEGKIKPEILETIPLDEINEAYERMEKG 327 (339)
T ss_pred CHHHhhhcCeEEEEEecCCHHHHHHHHHHHHhCCceeeEEeeECHHHHHHHHHHHHcC
Confidence 111112234556654433322223445544544322222 33566788888888874
No 44
>PRK05443 polyphosphate kinase; Provisional
Probab=46.80 E-value=94 Score=32.66 Aligned_cols=84 Identities=11% Similarity=0.231 Sum_probs=52.0
Q ss_pred HHHHHhhCCEEEEcCCCCC-HHHHh---hccCCCcEEe-----cCCCCHHHHHHHHHHHHhCCCeEEEEccCCCCCC-Cc
Q 024054 100 ALRVLKSANVILSEDTRHS-GKLLQ---YYNIKTPLLS-----YHKFNESQREQTVLNRLKQGEIVALISDAGTPGI-SD 169 (273)
Q Consensus 100 A~~~L~~ADvV~~~~~~~~-~~ll~---~~~~~~~~i~-----~~~~~~~~~~~~ii~~l~~G~~Vv~LS~~GDP~i-ys 169 (273)
--++|++=|+++... +.+ ..+++ ....+..++. |.-.....+++.+++++++|++|.++. .+-+-+ ..
T Consensus 332 if~~I~~~DiLLh~P-Y~SF~~~~~~i~~Aa~DP~V~~Ik~tlYr~~~~s~iv~aL~~Aa~~Gk~V~vlv-e~karfde~ 409 (691)
T PRK05443 332 IFAAIREKDILLHHP-YESFDPVVEFLRQAAADPDVLAIKQTLYRTSKDSPIVDALIEAAENGKQVTVLV-ELKARFDEE 409 (691)
T ss_pred HHHHHhhCCEEEECC-ccCchHHHHHHHHhccCCCeeEEEEEEEEecCCHHHHHHHHHHHHcCCEEEEEE-ccCccccHH
Confidence 467889999999963 443 22333 3222322221 211234678899999999999999995 454422 22
Q ss_pred hHHHHHHHhhhCCCCE
Q 024054 170 PGTELAKLCVDEKIPV 185 (273)
Q Consensus 170 ~~~~l~~~l~~~gi~v 185 (273)
......+.+.+.|++|
T Consensus 410 ~n~~~~~~L~~aGv~V 425 (691)
T PRK05443 410 ANIRWARRLEEAGVHV 425 (691)
T ss_pred HHHHHHHHHHHcCCEE
Confidence 3345567888888766
No 45
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=44.78 E-value=2e+02 Score=29.05 Aligned_cols=51 Identities=10% Similarity=0.046 Sum_probs=32.5
Q ss_pred eEEEEecCCCCccc-hHHHHHHHHhhC-CEEEEcCCCCCHHHHhhccCCCcEE
Q 024054 82 GLYLVATPIGNLED-ITLRALRVLKSA-NVILSEDTRHSGKLLQYYNIKTPLL 132 (273)
Q Consensus 82 ~l~iVGvGPGdpdl-LTlrA~~~L~~A-DvV~~~~~~~~~~ll~~~~~~~~~i 132 (273)
.+.=||.+++.|+. --..+++++++. |+.+.=|+..++.+-+.+..++.++
T Consensus 180 DIIDIG~~st~p~~~~v~~~V~~l~~~~~~pISIDT~~~~v~eaAL~aGAdiI 232 (499)
T TIGR00284 180 DMVALGTGSFDDDPDVVKEKVKTALDALDSPVIADTPTLDELYEALKAGASGV 232 (499)
T ss_pred CEEEECCCcCCCcHHHHHHHHHHHHhhCCCcEEEeCCCHHHHHHHHHcCCCEE
Confidence 58899999887763 246778888876 7777767755444333333344443
No 46
>cd07186 CofD_like LPPG:FO 2-phospho-L-lactate transferase; important in F420 biosynthesis. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis.
Probab=44.40 E-value=1.6e+02 Score=27.80 Aligned_cols=73 Identities=14% Similarity=0.166 Sum_probs=43.6
Q ss_pred cchHHHHHHHHhhCCEEEEcCCCCCHHHHhhccCCCcEEecCCCCHHHHHHHHHHHHhC-CCeEEEEc-cCCCCCCCchH
Q 024054 94 EDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQ-GEIVALIS-DAGTPGISDPG 171 (273)
Q Consensus 94 dlLTlrA~~~L~~ADvV~~~~~~~~~~ll~~~~~~~~~i~~~~~~~~~~~~~ii~~l~~-G~~Vv~LS-~~GDP~iys~~ 171 (273)
-.-+.+++++|++||+|+....- .+-.+.+. +. +..|.+++++ .-.|+++| ..|+--+.|+.
T Consensus 171 a~~~p~vl~AI~~AD~IVlGPgs----p~TSI~P~---Ll---------VpgI~eAL~~s~A~vV~Vspiig~~~v~Gpa 234 (303)
T cd07186 171 ARPAPEVLEAIEDADLVIIGPSN----PVTSIGPI---LA---------LPGIREALRDKKAPVVAVSPIIGGKAVSGPA 234 (303)
T ss_pred CCCCHHHHHHHHhCCEEEECCCc----cHHHhhhh---cc---------chhHHHHHHhCCCCEEEEcCCCCCCCCCchH
Confidence 34789999999999977764331 12112111 10 1223444443 23577777 66777888888
Q ss_pred HHHHHHhhhCCCCE
Q 024054 172 TELAKLCVDEKIPV 185 (273)
Q Consensus 172 ~~l~~~l~~~gi~v 185 (273)
..+++.+ |+++
T Consensus 235 ~~~m~a~---G~~~ 245 (303)
T cd07186 235 AKLMAAL---GFEP 245 (303)
T ss_pred HHHHHHc---CCCC
Confidence 8887754 5554
No 47
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=42.52 E-value=1.3e+02 Score=21.89 Aligned_cols=83 Identities=16% Similarity=0.150 Sum_probs=41.7
Q ss_pred HHHHHHHHhhCCEEEEcCCCCCHHHHhhccCCCcEEecCCCCHHHHHHHHHHHHhCCCeEEEEccCCCCCCCchHHHHHH
Q 024054 97 TLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAK 176 (273)
Q Consensus 97 TlrA~~~L~~ADvV~~~~~~~~~~ll~~~~~~~~~i~~~~~~~~~~~~~ii~~l~~G~~Vv~LS~~GDP~iys~~~~l~~ 176 (273)
|.+.++.+.+.+.++. |.|......+..-++...+ + ..+. +.....+..++.|++++..| .......+
T Consensus 2 ~~~e~~~~~~~~~~ii-D~R~~~~~~~~hipgA~~i--p---~~~~-~~~~~~~~~~~~vvl~c~~g-----~~a~~~a~ 69 (90)
T cd01524 2 QWHELDNYRADGVTLI-DVRTPQEFEKGHIKGAINI--P---LDEL-RDRLNELPKDKEIIVYCAVG-----LRGYIAAR 69 (90)
T ss_pred CHHHHHHHhcCCCEEE-ECCCHHHHhcCCCCCCEeC--C---HHHH-HHHHHhcCCCCcEEEEcCCC-----hhHHHHHH
Confidence 4444555556677777 4555444333222222222 1 1222 22223345677888875332 22344555
Q ss_pred HhhhCCCCEEEEccc
Q 024054 177 LCVDEKIPVVPIPGA 191 (273)
Q Consensus 177 ~l~~~gi~vevIPGI 191 (273)
.|++.|+++.++.|-
T Consensus 70 ~L~~~G~~v~~l~GG 84 (90)
T cd01524 70 ILTQNGFKVKNLDGG 84 (90)
T ss_pred HHHHCCCCEEEecCC
Confidence 667778778777764
No 48
>COG1634 Uncharacterized Rossmann fold enzyme [General function prediction only]
Probab=40.39 E-value=49 Score=30.01 Aligned_cols=72 Identities=19% Similarity=0.254 Sum_probs=40.3
Q ss_pred CeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhccCCCcEEecCCCCHHHHHHHHHHHHhCCCeEEEEc
Q 024054 81 PGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALIS 160 (273)
Q Consensus 81 g~l~iVGvGPGdpdlLTlrA~~~L~~ADvV~~~~~~~~~~ll~~~~~~~~~i~~~~~~~~~~~~~ii~~l~~G~~Vv~LS 160 (273)
..+++||.||+-.+.+.. -++++|++++. ....+++ .+.-..++..+. +...+.+.+...+|..+++-
T Consensus 53 ~~v~vvG~gP~l~e~~~~------~~~~~vi~Adg-A~~~l~~-~gi~pDiiVTDl---Dgd~e~~~~~~~~g~i~VVH- 120 (232)
T COG1634 53 REVAVVGAGPSLEEEIKG------LSSEVVIAADG-AVSALLE-RGIRPDIIVTDL---DGDPEDLLSCTAKGSIVVVH- 120 (232)
T ss_pred CEEEEECCCCcHhhhhcc------cccceEEeccH-HHHHHHH-cCCCCcEEEecC---CCCHHHHHHhhccCCEEEEE-
Confidence 469999999986665544 56899999864 2222232 222222332211 12234556655677555554
Q ss_pred cCCC
Q 024054 161 DAGT 164 (273)
Q Consensus 161 ~~GD 164 (273)
.-||
T Consensus 121 AHGD 124 (232)
T COG1634 121 AHGD 124 (232)
T ss_pred ecCc
Confidence 6787
No 49
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=40.22 E-value=93 Score=25.24 Aligned_cols=81 Identities=15% Similarity=0.283 Sum_probs=48.7
Q ss_pred hCCEEEEcCCCCCHHHHhhccCCCcEE-ecCCCCHHHHHHHHHHHHhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCC
Q 024054 106 SANVILSEDTRHSGKLLQYYNIKTPLL-SYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIP 184 (273)
Q Consensus 106 ~ADvV~~~~~~~~~~ll~~~~~~~~~i-~~~~~~~~~~~~~ii~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~ 184 (273)
+.|++++++-++.++ .+.+.. ... ..+... .+++.+.+..+-.+.++ -.|-.++-+...+..+.+++.+++
T Consensus 20 ~~DIvi~~dG~v~rr-~K~lsk--rK~GTSHkl~----~eEle~~lee~~E~ivv-GTG~~G~l~l~~ea~e~~r~k~~~ 91 (121)
T COG1504 20 EHDIVIRPDGKVERR-EKELSK--RKYGTSHKLA----LEELEELLEEGPEVIVV-GTGQSGMLELSEEAREFFRKKGCE 91 (121)
T ss_pred cccEEEecCCceehh-hhhhhh--hhcCcccccC----HHHHHHHHhcCCcEEEE-ecCceeEEEeCHHHHHHHHhcCCe
Confidence 469999987655332 222111 111 011112 23344445567788888 578887777778888888888888
Q ss_pred EEEEccchHH
Q 024054 185 VVPIPGASAF 194 (273)
Q Consensus 185 vevIPGISS~ 194 (273)
+...|=.-++
T Consensus 92 vi~~pT~EAi 101 (121)
T COG1504 92 VIELPTPEAI 101 (121)
T ss_pred EEEeCCHHHH
Confidence 8777755443
No 50
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=39.17 E-value=1.1e+02 Score=25.71 Aligned_cols=54 Identities=11% Similarity=0.004 Sum_probs=36.0
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchH
Q 024054 138 NESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASA 193 (273)
Q Consensus 138 ~~~~~~~~ii~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~vevIPGISS 193 (273)
+.++..+.+.+. ...-..+.++ .|+|+++....++++.+++.|+.+.+.+.-+-
T Consensus 48 ~~~~i~~~i~~~-~~~~~~i~~s-GGEPll~~~l~~li~~~~~~g~~v~i~TNg~~ 101 (191)
T TIGR02495 48 EVEFLLEFLRSR-QGLIDGVVIT-GGEPTLQAGLPDFLRKVRELGFEVKLDTNGSN 101 (191)
T ss_pred CHHHHHHHHHHh-cCCCCeEEEE-CCcccCcHhHHHHHHHHHHCCCeEEEEeCCCC
Confidence 345555555433 2222344564 79999998788889999999988877765543
No 51
>PRK13606 LPPG:FO 2-phospho-L-lactate transferase; Provisional
Probab=36.89 E-value=1.9e+02 Score=27.27 Aligned_cols=81 Identities=15% Similarity=0.174 Sum_probs=46.7
Q ss_pred eEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhccCCCcEEecCCCCHHHHHHHHHHHHhCCCeEEEEc-
Q 024054 82 GLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALIS- 160 (273)
Q Consensus 82 ~l~iVGvGPGdpdlLTlrA~~~L~~ADvV~~~~~~~~~~ll~~~~~~~~~i~~~~~~~~~~~~~ii~~l~~G~~Vv~LS- 160 (273)
.|++.|. +.-.-|.+++++|++||+|+....- .+-.+.+. +. +..|.+++ ....|+.+|
T Consensus 164 ~v~~~~~---~~a~a~p~vl~AI~~AD~IiiGPgn----p~TSI~P~---L~---------v~gi~eAL-~~a~vV~Vsp 223 (303)
T PRK13606 164 DVVFVGA---EKAKPAPGVLEAIEEADAVIIGPSN----PVTSIGPI---LA---------VPGIREAL-TEAPVVAVSP 223 (303)
T ss_pred EEEEeCc---ccCCCCHHHHHHHHhCCEEEECCCc----cHHhhchh---cc---------chhHHHHH-hCCCEEEEcC
Confidence 4555543 2234789999999999988875431 12222111 11 12244444 445677776
Q ss_pred cCCCCCCCchHHHHHHHhhhCCCCE
Q 024054 161 DAGTPGISDPGTELAKLCVDEKIPV 185 (273)
Q Consensus 161 ~~GDP~iys~~~~l~~~l~~~gi~v 185 (273)
..|+--+.|+...+.++ .|+++
T Consensus 224 ~Ig~~~v~GPA~~lm~a---~g~e~ 245 (303)
T PRK13606 224 IIGGAPVSGPAAKLMAA---IGVEV 245 (303)
T ss_pred CCCCCcCCChhHHHHHH---cCCcc
Confidence 45666777888777664 45554
No 52
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=36.87 E-value=3.3e+02 Score=24.84 Aligned_cols=103 Identities=12% Similarity=0.119 Sum_probs=61.6
Q ss_pred HHHHHHHHHHhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCccEEEEEEeCCCCcc
Q 024054 141 QREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARS 220 (273)
Q Consensus 141 ~~~~~ii~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~vevIPGISS~~aAaA~lG~pl~~~~~ig~lp~~~~~ 220 (273)
+..+.+.+.+.+-++|.++. .| .-+....++..+|..-|.++..+.+.....+ ...-+..+|+.+. ++..+..
T Consensus 118 ~~l~~av~~L~~A~rI~~~G-~g--~S~~vA~~~~~~l~~ig~~~~~~~d~~~~~~--~~~~~~~~Dv~i~--iS~sG~t 190 (281)
T COG1737 118 EALERAVELLAKARRIYFFG-LG--SSGLVASDLAYKLMRIGLNVVALSDTHGQLM--QLALLTPGDVVIA--ISFSGYT 190 (281)
T ss_pred HHHHHHHHHHHcCCeEEEEE-ec--hhHHHHHHHHHHHHHcCCceeEecchHHHHH--HHHhCCCCCEEEE--EeCCCCc
Confidence 44566777777777888872 22 2223356777788888999999999987774 4444445577655 4555443
Q ss_pred hH--HHHHhhhCCCCeEEEEeCc--ccHHHHHHH
Q 024054 221 RT--ERLMLSANEVKTQIFYVPP--HKLLQFLEE 250 (273)
Q Consensus 221 r~--~~L~~l~~~~~tlVl~~~~--~~l~~i~~~ 250 (273)
++ +.++.+.+.+-++|.++.. +.+.+..+.
T Consensus 191 ~e~i~~a~~ak~~ga~vIaiT~~~~spla~~Ad~ 224 (281)
T COG1737 191 REIVEAAELAKERGAKVIAITDSADSPLAKLADI 224 (281)
T ss_pred HHHHHHHHHHHHCCCcEEEEcCCCCCchhhhhce
Confidence 22 3344444555555555443 335555543
No 53
>PRK00861 putative lipid kinase; Reviewed
Probab=35.80 E-value=1.7e+02 Score=26.72 Aligned_cols=51 Identities=20% Similarity=0.304 Sum_probs=38.1
Q ss_pred HHhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCC
Q 024054 149 RLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLAT 205 (273)
Q Consensus 149 ~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~vevIPGISS~~aAaA~lG~pl 205 (273)
...++.+++++ ..|| |+..+.++.+...+.++-++|+-| .+-.|-.+|+|.
T Consensus 53 ~~~~~~d~vv~-~GGD----GTl~evv~~l~~~~~~lgviP~GT-gNdfAr~lgi~~ 103 (300)
T PRK00861 53 AIERGAELIIA-SGGD----GTLSAVAGALIGTDIPLGIIPRGT-ANAFAAALGIPD 103 (300)
T ss_pred HHhcCCCEEEE-ECCh----HHHHHHHHHHhcCCCcEEEEcCCc-hhHHHHHcCCCC
Confidence 33456667777 5899 667778888877778899999976 666667788874
No 54
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=35.63 E-value=1.3e+02 Score=28.47 Aligned_cols=47 Identities=19% Similarity=0.163 Sum_probs=32.8
Q ss_pred HHHHHH-hCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccch
Q 024054 145 TVLNRL-KQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGAS 192 (273)
Q Consensus 145 ~ii~~l-~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~vevIPGIS 192 (273)
.+++.+ +.|-..+.++ .|.|++..-..++++.+++.|+.+.+...-+
T Consensus 53 ~ii~~~~~~g~~~v~~~-GGEPll~~~~~~il~~~~~~g~~~~i~TNG~ 100 (378)
T PRK05301 53 RVLREARALGALQLHFS-GGEPLLRKDLEELVAHARELGLYTNLITSGV 100 (378)
T ss_pred HHHHHHHHcCCcEEEEE-CCccCCchhHHHHHHHHHHcCCcEEEECCCc
Confidence 344444 3454455563 8999999888889999988888777665443
No 55
>COG4810 EutS Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=34.35 E-value=1.3e+02 Score=23.94 Aligned_cols=99 Identities=20% Similarity=0.225 Sum_probs=58.0
Q ss_pred HHHHHHHhCCCeEEEEccCCCCCCCchHHHHHHHhhh-CC---C-CEEEEccchHHHHHHHhCCCCCccEEEEEEeCCCC
Q 024054 144 QTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVD-EK---I-PVVPIPGASAFVAALSASGLATDEFTFVGFLPKHA 218 (273)
Q Consensus 144 ~~ii~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~-~g---i-~vevIPGISS~~aAaA~lG~pl~~~~~ig~lp~~~ 218 (273)
+++++..-.||.|-+.. ++..++.++...+.- .+ | -..+.||-.|+.++=-...- .++. +||+-
T Consensus 13 eR~IQEyVPGKQVTLAH-----LIAnP~~dl~~KlGl~~~~~AIGIlTiTP~EaaiIa~DiA~Ks--g~v~-iGFlD--- 81 (121)
T COG4810 13 ERIIQEYVPGKQVTLAH-----LIANPGEDLAKKLGLDPDAGAIGILTITPGEAAIIAGDIATKS--GDVH-IGFLD--- 81 (121)
T ss_pred hHHHHHhCCcceeeHHH-----HHcCCCHHHHHHhCCCCCCCceEEEEecCchhhhhhhhhhccc--CceE-Eeeee---
Confidence 34555556788888874 677777888776632 11 1 14778998877765333222 1222 35542
Q ss_pred cchHHHHHhhhCCCCeEEEEeCcccHHHHHHHHhhhcCCCcEEEeE
Q 024054 219 RSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRYIRYL 264 (273)
Q Consensus 219 ~~r~~~L~~l~~~~~tlVl~~~~~~l~~i~~~L~e~~~~d~~v~v~ 264 (273)
+..+++|++.+....++.+++..+++++-....+|
T Consensus 82 -----------RFsGalvltGdv~aVE~aLkqv~~~L~e~l~ft~c 116 (121)
T COG4810 82 -----------RFSGALVLTGDVGAVEEALKQVVSGLGELLNFTLC 116 (121)
T ss_pred -----------cccceEEEEcchHHHHHHHHHHHHHHHHHhceeee
Confidence 13578999988777666666655544433333444
No 56
>PRK13057 putative lipid kinase; Reviewed
Probab=34.23 E-value=2e+02 Score=26.17 Aligned_cols=50 Identities=14% Similarity=0.197 Sum_probs=36.6
Q ss_pred HhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCC
Q 024054 150 LKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLAT 205 (273)
Q Consensus 150 l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~vevIPGISS~~aAaA~lG~pl 205 (273)
+.++.+++++ ..|| |+..+.++.+...++++-++|+-| .+-.+-.+|+|.
T Consensus 47 ~~~~~d~iiv-~GGD----GTv~~v~~~l~~~~~~lgiiP~GT-~Ndfar~Lg~~~ 96 (287)
T PRK13057 47 YADGVDLVIV-GGGD----GTLNAAAPALVETGLPLGILPLGT-ANDLARTLGIPL 96 (287)
T ss_pred HHcCCCEEEE-ECch----HHHHHHHHHHhcCCCcEEEECCCC-ccHHHHHcCCCC
Confidence 4455566777 5899 677778888777788999999886 556666667764
No 57
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=34.21 E-value=2e+02 Score=27.72 Aligned_cols=73 Identities=14% Similarity=0.082 Sum_probs=46.4
Q ss_pred CCEEEEcCCCCCHHHHhhccCCCcEEecCCCCHHHHHHHHHHHHhCC-CeEEEEccCCCCCCCchH--HHHHHHhhhCCC
Q 024054 107 ANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQG-EIVALISDAGTPGISDPG--TELAKLCVDEKI 183 (273)
Q Consensus 107 ADvV~~~~~~~~~~ll~~~~~~~~~i~~~~~~~~~~~~~ii~~l~~G-~~Vv~LS~~GDP~iys~~--~~l~~~l~~~gi 183 (273)
--+|+++.+ ....-|+.++....++......-.+-++.|+ ++| ++|++++ ||--.|.+ ..+++.|++.|+
T Consensus 24 ~~~ilveg~-~d~~~l~~lgi~g~~i~~s~~p~~~cad~ii---~~gi~rVVi~~---D~d~~G~~~~~~~~~~L~~aGi 96 (360)
T PRK14719 24 GIPILVEGP-NDILSLKNLKINANFITVSNTPVFQIADDLI---AENISEVILLT---DFDRAGRVYAKNIMEEFQSRGI 96 (360)
T ss_pred CCEEEEEcc-hHHHHHHHcCCCCcEEEEeCCchHHHHHHHH---HcCCCEEEEEE---CCCCCCCccchHHHHHHHHCCC
Confidence 347888764 3456677888877776554333233444444 345 7899983 55545443 567888899998
Q ss_pred CEE
Q 024054 184 PVV 186 (273)
Q Consensus 184 ~ve 186 (273)
+|.
T Consensus 97 ~V~ 99 (360)
T PRK14719 97 KVN 99 (360)
T ss_pred EEE
Confidence 773
No 58
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=33.84 E-value=1.9e+02 Score=28.43 Aligned_cols=45 Identities=20% Similarity=0.203 Sum_probs=31.2
Q ss_pred EEEEec--CCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhccCC
Q 024054 83 LYLVAT--PIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIK 128 (273)
Q Consensus 83 l~iVGv--GPGdpdlLTlrA~~~L~~ADvV~~~~~~~~~~ll~~~~~~ 128 (273)
++++|. ||=+-..-..-+..++++||.|.+=| ..+.++++.++..
T Consensus 151 v~l~gqsiGPf~~~~~r~l~r~vl~~~~~ItvRD-~~S~~~Lk~lGv~ 197 (426)
T PRK10017 151 LYMIGHSVGPFQDEQFNQLANYVFGHCDALILRE-SVSLDLMKRSNIT 197 (426)
T ss_pred EEEECCcCCCcCCHHHHHHHHHHHhcCCEEEEcc-HHHHHHHHHhCCC
Confidence 555554 55455555677889999999999954 3566777777654
No 59
>PLN02335 anthranilate synthase
Probab=33.23 E-value=36 Score=30.20 Aligned_cols=39 Identities=15% Similarity=0.038 Sum_probs=27.0
Q ss_pred HHHHhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEcc
Q 024054 147 LNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPG 190 (273)
Q Consensus 147 i~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~vevIPG 190 (273)
+..-++.++|+++ |.||...|. +.+.+++.|++++++|.
T Consensus 12 ~~~~~~~~~ilvi-D~~dsft~~----i~~~L~~~g~~~~v~~~ 50 (222)
T PLN02335 12 INSSKQNGPIIVI-DNYDSFTYN----LCQYMGELGCHFEVYRN 50 (222)
T ss_pred hcccCccCcEEEE-ECCCCHHHH----HHHHHHHCCCcEEEEEC
Confidence 3444566788888 888865553 55666667888888876
No 60
>COG3964 Predicted amidohydrolase [General function prediction only]
Probab=32.66 E-value=1e+02 Score=29.52 Aligned_cols=144 Identities=19% Similarity=0.248 Sum_probs=81.8
Q ss_pred ccCCCChhhhhHhhhhcCCCCCCCCeEEEEec------CCCCccchHHHHHHHH--hhCCEEEEcCCCCCHHHHhhccC-
Q 024054 57 SQSQTSPDFSNLILEQSSKRGPLEPGLYLVAT------PIGNLEDITLRALRVL--KSANVILSEDTRHSGKLLQYYNI- 127 (273)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~iVGv------GPGdpdlLTlrA~~~L--~~ADvV~~~~~~~~~~ll~~~~~- 127 (273)
+|....-+|...+.++... ..+.=+.+=.. --+|++++-+..+.+. +.+|+|++-.-|........++.
T Consensus 95 aGaanf~gF~r~vie~Sr~--RI~Aflnvs~~Gl~a~nE~~d~~nid~d~i~aa~reh~d~ivGlKvR~s~~~~g~~Git 172 (386)
T COG3964 95 AGAANFDGFYRTVIEASRV--RIKAFLNVSPPGLTASNELYDPDNIDEDKIHAAFREHRDVIVGLKVRVSTEDIGEYGIT 172 (386)
T ss_pred cCccchhhHHHHhhcchhh--eeeeeeeccCcceeeehhhCChhhCCHHHHHHHHHhCcCcEEEEEEEeeeccccccCCc
Confidence 3344344677777777433 11111111111 2367888887665443 56899998643332222221111
Q ss_pred ------------CCcEEecCCCCHHHHHHHHHHHHhCCCeEEEEccCCCCC---CCc-hHHHHHHHhhhCCCCEEEEccc
Q 024054 128 ------------KTPLLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPG---ISD-PGTELAKLCVDEKIPVVPIPGA 191 (273)
Q Consensus 128 ------------~~~~i~~~~~~~~~~~~~ii~~l~~G~~Vv~LS~~GDP~---iys-~~~~l~~~l~~~gi~vevIPGI 191 (273)
+.+.. .+-.+.....+++++.++.|..+.-. ..|-|. +.+ -....++.++++|+.+.+=-|-
T Consensus 173 Pl~la~~ia~~~klPlm-vHigePp~~~dEvlerL~~GDIitHc-fngkpn~~l~~dg~vr~~vrra~erGV~fD~ghG~ 250 (386)
T COG3964 173 PLTLALRIANDLKLPLM-VHIGEPPVLMDEVLERLRRGDIITHC-FNGKPNTILTDDGVVRAEVRRARERGVIFDAGHGR 250 (386)
T ss_pred hHHHHHHHHhhcCCceE-EecCCCCccHHHHHHhccCCceeeee-ccCCCCCccccchhHHHHHHHHHhcceEEEccCCc
Confidence 11211 11112223346677888888766665 566554 332 3456788899999999999999
Q ss_pred hHHHHHHHhCCCC
Q 024054 192 SAFVAALSASGLA 204 (273)
Q Consensus 192 SS~~aAaA~lG~p 204 (273)
+||+..-|+.-+.
T Consensus 251 asfsf~vAr~aia 263 (386)
T COG3964 251 ASFSFNVARRAIA 263 (386)
T ss_pred ceeeHHHHHHHHh
Confidence 9999887776554
No 61
>COG0813 DeoD Purine-nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=32.45 E-value=3.2e+02 Score=24.89 Aligned_cols=44 Identities=9% Similarity=0.178 Sum_probs=31.3
Q ss_pred cccccCCCChhhhhHhhhhcCCCCCCCCeEEEEecCCCCccchHHHHHHHHhhCC
Q 024054 54 CSCSQSQTSPDFSNLILEQSSKRGPLEPGLYLVATPIGNLEDITLRALRVLKSAN 108 (273)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~iVGvGPGdpdlLTlrA~~~L~~AD 108 (273)
|.+..++ +-.|.+++... ++.+.|.|.|=|+ ++..+.+++..-+
T Consensus 39 ~vnevR~-mlgfTGtYKGk---------~iSvmg~GmGipS-~sIY~~ELi~~y~ 82 (236)
T COG0813 39 CVNEVRG-MLGFTGTYKGK---------KISVMGHGMGIPS-ISIYSRELITDYG 82 (236)
T ss_pred hhhhhcc-hhcccceecCc---------EEEEEEecCCCcc-HHHHHHHHHHHhC
Confidence 4444454 44555544332 6999999999887 9999999998875
No 62
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=32.19 E-value=2.8e+02 Score=26.14 Aligned_cols=39 Identities=26% Similarity=0.235 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhC--CCeEEEEccCCCCCCCch--HHHHHHHhhh
Q 024054 141 QREQTVLNRLKQ--GEIVALISDAGTPGISDP--GTELAKLCVD 180 (273)
Q Consensus 141 ~~~~~ii~~l~~--G~~Vv~LS~~GDP~iys~--~~~l~~~l~~ 180 (273)
+..+.+++.+++ |-+-+++| .|||++... ..++++.+.+
T Consensus 145 ~~~~~~i~~i~~~~~i~eV~ls-GGDPLl~~d~~L~~ll~~L~~ 187 (331)
T TIGR00238 145 KKWQKALDYIAEHPEIIEILIS-GGDPLMAKDHELEWLLKRLEE 187 (331)
T ss_pred HHHHHHHHHHHhCCCcCEEEEE-CCccccCCHHHHHHHHHHHHh
Confidence 345556666642 43456664 899998865 5567777765
No 63
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=31.41 E-value=2.9e+02 Score=22.57 Aligned_cols=119 Identities=9% Similarity=-0.033 Sum_probs=62.0
Q ss_pred CCCeEEEEecCCCCccchHHHHHHHHhh---CCEEEEcCCCCCHHHHhhccC-CCcEEe--cCCCCHHHHHHHHHHHHhC
Q 024054 79 LEPGLYLVATPIGNLEDITLRALRVLKS---ANVILSEDTRHSGKLLQYYNI-KTPLLS--YHKFNESQREQTVLNRLKQ 152 (273)
Q Consensus 79 ~~g~l~iVGvGPGdpdlLTlrA~~~L~~---ADvV~~~~~~~~~~ll~~~~~-~~~~i~--~~~~~~~~~~~~ii~~l~~ 152 (273)
|++.-.++|+.+||...+-+.-...+-+ -++|+.......+++++.... +..++. +.+.......+.+++.+++
T Consensus 1 ~~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~~~~d~V~lS~~~~~~~~~~~~~~~~L~~ 80 (137)
T PRK02261 1 MKKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIETDADAILVSSLYGHGEIDCRGLREKCIE 80 (137)
T ss_pred CCCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcCccccCHHHHHHHHHHHHh
Confidence 3455569999999987776555444433 356666433333556654432 333432 2222223334445555542
Q ss_pred C-C-eEEEEccCCCCCCCc-hHHHHHHHhhhCCCCEEEEccchHHHHHHH
Q 024054 153 G-E-IVALISDAGTPGISD-PGTELAKLCVDEKIPVVPIPGASAFVAALS 199 (273)
Q Consensus 153 G-~-~Vv~LS~~GDP~iys-~~~~l~~~l~~~gi~vevIPGISS~~aAaA 199 (273)
. - ++-++ ..|-+.+-+ ...+..+.+++.|++...-||. ...-.+.
T Consensus 81 ~~~~~~~i~-vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~-~~~~i~~ 128 (137)
T PRK02261 81 AGLGDILLY-VGGNLVVGKHDFEEVEKKFKEMGFDRVFPPGT-DPEEAID 128 (137)
T ss_pred cCCCCCeEE-EECCCCCCccChHHHHHHHHHcCCCEEECcCC-CHHHHHH
Confidence 2 2 35555 468766532 2345567778888654444444 4444443
No 64
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=31.23 E-value=1.6e+02 Score=27.63 Aligned_cols=44 Identities=20% Similarity=0.126 Sum_probs=30.6
Q ss_pred HHHHHH-hCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEc
Q 024054 145 TVLNRL-KQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIP 189 (273)
Q Consensus 145 ~ii~~l-~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~vevIP 189 (273)
.+++.+ ..|-..+.++ .|+|++..-..++++.+++.|+.+.+.-
T Consensus 44 ~ii~~~~~~g~~~v~~~-GGEPll~~~~~~ii~~~~~~g~~~~l~T 88 (358)
T TIGR02109 44 DVLTQAAELGVLQLHFS-GGEPLARPDLVELVAHARRLGLYTNLIT 88 (358)
T ss_pred HHHHHHHhcCCcEEEEe-CccccccccHHHHHHHHHHcCCeEEEEe
Confidence 344444 3344455664 8999999888889999988888766554
No 65
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=31.13 E-value=1.4e+02 Score=23.60 Aligned_cols=49 Identities=24% Similarity=0.295 Sum_probs=27.4
Q ss_pred HHHHHHHHhCCCeEEEEccC--CCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHH
Q 024054 143 EQTVLNRLKQGEIVALISDA--GTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAA 197 (273)
Q Consensus 143 ~~~ii~~l~~G~~Vv~LS~~--GDP~iys~~~~l~~~l~~~gi~vevIPGISS~~aA 197 (273)
.+.+++...+++.|.+++|. |.|. ....+.+.++ -++++|-|+.-....
T Consensus 48 l~~~i~~~~~~~~vivltDl~GGSp~-----n~a~~~~~~~-~~~~vIsG~NLpmll 98 (116)
T TIGR00824 48 YNAALADLDTEEEVLFLVDIFGGSPY-----NAAARIIVDK-PHMDVIAGVNLPLLL 98 (116)
T ss_pred HHHHHHhcCCCCCEEEEEeCCCCCHH-----HHHHHHHhhc-CCEEEEEecCHHHHH
Confidence 34445555567778888775 6552 1122222222 368899999754433
No 66
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=30.75 E-value=34 Score=26.14 Aligned_cols=51 Identities=20% Similarity=0.249 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHh--C--CCeEEEEccC-CCCCCCchHHHHHHHhh------hCCCCEEEEcc
Q 024054 139 ESQREQTVLNRLK--Q--GEIVALISDA-GTPGISDPGTELAKLCV------DEKIPVVPIPG 190 (273)
Q Consensus 139 ~~~~~~~ii~~l~--~--G~~Vv~LS~~-GDP~iys~~~~l~~~l~------~~gi~vevIPG 190 (273)
.++..+++.+..+ + .-.+=++ |- |||+..|.-.+|.++++ +.++-++|.||
T Consensus 22 ~e~L~~~v~~~c~~~~~q~ft~kw~-DEEGDp~tiSS~~EL~EA~rl~~~n~~~~l~ihvfp~ 83 (83)
T cd06404 22 LEELCNEVRDMCRFHNDQPFTLKWI-DEEGDPCTISSQMELEEAFRLYELNKDSELNIHVFPG 83 (83)
T ss_pred HHHHHHHHHHHhCCCCCCcEEEEEE-CCCCCceeecCHHHHHHHHHHHHhcCcccEEEEecCC
Confidence 3455555544433 2 2245556 55 99999999888877664 23567788776
No 67
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=30.45 E-value=1.9e+02 Score=22.79 Aligned_cols=51 Identities=16% Similarity=0.141 Sum_probs=31.3
Q ss_pred HHhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCC----CEEEEccchHHHHHHHhCCCCC
Q 024054 149 RLKQGEIVALISDAGTPGISDPGTELAKLCVDEKI----PVVPIPGASAFVAALSASGLAT 205 (273)
Q Consensus 149 ~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi----~vevIPGISS~~aAaA~lG~pl 205 (273)
..+...+++++ ..|| |+..+++..+.+.+. ++-++|+-| ....+-.+|++.
T Consensus 50 ~~~~~~~~ivv-~GGD----GTl~~vv~~l~~~~~~~~~~l~iiP~GT-~N~~ar~lg~~~ 104 (130)
T PF00781_consen 50 ALDDYPDVIVV-VGGD----GTLNEVVNGLMGSDREDKPPLGIIPAGT-GNDFARSLGIPS 104 (130)
T ss_dssp HHTTS-SEEEE-EESH----HHHHHHHHHHCTSTSSS--EEEEEE-SS-S-HHHHHTT--S
T ss_pred hhccCccEEEE-EcCc----cHHHHHHHHHhhcCCCccceEEEecCCC-hhHHHHHcCCCC
Confidence 33444356666 4899 666778887776654 788999765 666677777763
No 68
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=30.13 E-value=2.7e+02 Score=21.90 Aligned_cols=54 Identities=28% Similarity=0.328 Sum_probs=31.0
Q ss_pred HHHHHHHHhCCCeEEEEccC--CCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCC
Q 024054 143 EQTVLNRLKQGEIVALISDA--GTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASG 202 (273)
Q Consensus 143 ~~~ii~~l~~G~~Vv~LS~~--GDP~iys~~~~l~~~l~~~gi~vevIPGISS~~aAaA~lG 202 (273)
.+.+++...+++.|.+++|. |.|. .....+.....+++++.|++-....-+...
T Consensus 47 i~~~i~~~~~~~~viil~Dl~GGSp~------n~~~~~~~~~~~~~visG~nlpmlle~~~~ 102 (122)
T cd00006 47 IKAALAELDSGEGVLILTDLFGGSPN------NAAARLSMEHPPVEVIAGVNLPMLLEAARA 102 (122)
T ss_pred HHHHHHHhCCCCcEEEEEeCCCCCHH------HHHHHHHhcCCCEEEEEccCHHHHHHHHHc
Confidence 34445555556678877786 6552 222222222256899999986665554433
No 69
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.97 E-value=87 Score=27.01 Aligned_cols=44 Identities=0% Similarity=0.026 Sum_probs=34.9
Q ss_pred HHHHHhhhCCCCeEEEEeCcccHHHHHHHHhhhcCCCcEEEeEe
Q 024054 222 TERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRYIRYLK 265 (273)
Q Consensus 222 ~~~L~~l~~~~~tlVl~~~~~~l~~i~~~L~e~~~~d~~v~v~~ 265 (273)
++.|+--.+.-.+++||...+-++.+-..|...++.++.++.||
T Consensus 129 kdlwK~dl~dy~~vviFgaes~m~dLe~KL~~E~p~nt~vvacR 172 (199)
T KOG4058|consen 129 KDLWKVDLRDYRNVVIFGAESVMPDLEDKLRTELPANTRVVACR 172 (199)
T ss_pred hhhhhccccccceEEEeehHHHHhhhHHHHHhhCcCCCeEEEEe
Confidence 44566555666789999888888888888886688899999886
No 70
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=29.95 E-value=3.2e+02 Score=25.37 Aligned_cols=53 Identities=19% Similarity=0.206 Sum_probs=40.5
Q ss_pred HHHhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCC-EEEEccchHHHHHHHhCCCCCc
Q 024054 148 NRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIP-VVPIPGASAFVAALSASGLATD 206 (273)
Q Consensus 148 ~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~-vevIPGISS~~aAaA~lG~pl~ 206 (273)
+....+-++++. -.|| |+..+.+..+.+.+.+ +-++|+-| .+..+-.+|+|..
T Consensus 53 ~a~~~~~D~via-~GGD----GTv~evingl~~~~~~~LgilP~GT-~NdfAr~Lgip~~ 106 (301)
T COG1597 53 EAAVEGYDTVIA-AGGD----GTVNEVANGLAGTDDPPLGILPGGT-ANDFARALGIPLD 106 (301)
T ss_pred HHHhcCCCEEEE-ecCc----chHHHHHHHHhcCCCCceEEecCCc-hHHHHHHcCCCch
Confidence 333446677777 5899 6777888888887777 89999997 7778888899874
No 71
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=28.82 E-value=1.5e+02 Score=27.62 Aligned_cols=37 Identities=11% Similarity=0.195 Sum_probs=23.3
Q ss_pred CeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHh
Q 024054 81 PGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQ 123 (273)
Q Consensus 81 g~l~iVGvGPGdpdlLTlrA~~~L~~ADvV~~~~~~~~~~ll~ 123 (273)
.+|.+||.|.|. .+-..++...-..+++++ +.+.+++
T Consensus 78 k~VLiiGgGdG~---tlRevlkh~~ve~i~~VE---ID~~Vi~ 114 (282)
T COG0421 78 KRVLIIGGGDGG---TLREVLKHLPVERITMVE---IDPAVIE 114 (282)
T ss_pred CeEEEECCCccH---HHHHHHhcCCcceEEEEE---cCHHHHH
Confidence 489999999874 344445555455667775 3345554
No 72
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=28.73 E-value=1.3e+02 Score=23.43 Aligned_cols=63 Identities=14% Similarity=0.147 Sum_probs=40.6
Q ss_pred HHHHHHHHHHH-HhCCCeEEEEccCCCCCCCchHHHHHHHhhhC---CCCEEEEccchH----HHHHHHhCC
Q 024054 139 ESQREQTVLNR-LKQGEIVALISDAGTPGISDPGTELAKLCVDE---KIPVVPIPGASA----FVAALSASG 202 (273)
Q Consensus 139 ~~~~~~~ii~~-l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~---gi~vevIPGISS----~~aAaA~lG 202 (273)
.++..+.+.+. ...|.....+ ..|+|..+....+++..+.+. ++++.+....+- ..-..+.+|
T Consensus 30 ~e~i~~~~~~~~~~~~~~~i~~-~~gep~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~l~~l~~~~ 100 (166)
T PF04055_consen 30 PEEILEEIKELKQDKGVKEIFF-GGGEPTLHPDFIELLELLRKIKKRGIRISINTNGTLLDEELLDELKKLG 100 (166)
T ss_dssp HHHHHHHHHHHHHHTTHEEEEE-ESSTGGGSCHHHHHHHHHHHCTCTTEEEEEEEESTTHCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhHhcCCcEEEE-eecCCCcchhHHHHHHHHHHhhccccceeeeccccchhHHHHHHHHhcC
Confidence 34555555555 3566677777 489999999887777776664 666655544443 355556666
No 73
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=28.47 E-value=4.4e+02 Score=23.69 Aligned_cols=107 Identities=16% Similarity=0.126 Sum_probs=56.9
Q ss_pred eEEEEecCCCCccc----------hHHHHHHHHhhC-CEEEEcCCCCCHHHHhhccCCCcEEe-cCCCCH-HHHHHHHHH
Q 024054 82 GLYLVATPIGNLED----------ITLRALRVLKSA-NVILSEDTRHSGKLLQYYNIKTPLLS-YHKFNE-SQREQTVLN 148 (273)
Q Consensus 82 ~l~iVGvGPGdpdl----------LTlrA~~~L~~A-DvV~~~~~~~~~~ll~~~~~~~~~i~-~~~~~~-~~~~~~ii~ 148 (273)
.+.=||.++..|+- -=..+++.|++. ++.+.=|+..++-+-+.+...+.++. ....+. ++. .+
T Consensus 39 diIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~piSIDT~~~~v~~aaL~~g~~iINdis~~~~~~~~----~~ 114 (258)
T cd00423 39 DIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDVPISVDTFNAEVAEAALKAGADIINDVSGGRGDPEM----AP 114 (258)
T ss_pred CEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCCeEEEeCCcHHHHHHHHHhCCCEEEeCCCCCCChHH----HH
Confidence 57888888876642 234567777655 77776676544333333433455553 222222 233 33
Q ss_pred HHh-CCCeEEEEccCCCCCC--------------CchHHHHHHHhhhCCC---CEEEEccch
Q 024054 149 RLK-QGEIVALISDAGTPGI--------------SDPGTELAKLCVDEKI---PVVPIPGAS 192 (273)
Q Consensus 149 ~l~-~G~~Vv~LS~~GDP~i--------------ys~~~~l~~~l~~~gi---~vevIPGIS 192 (273)
.++ .|-.++++...|+|.. ..-..+.++.+.+.|+ ++-+=||+-
T Consensus 115 l~~~~~~~vV~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~IilDPg~g 176 (258)
T cd00423 115 LAAEYGAPVVLMHMDGTPQTMQNNPYYADVVDEVVEFLEERVEAATEAGIPPEDIILDPGIG 176 (258)
T ss_pred HHHHcCCCEEEECcCCCCcccccCCCcchHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCCCC
Confidence 332 3556777743465541 1223445566666775 556777775
No 74
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=28.37 E-value=44 Score=26.38 Aligned_cols=8 Identities=25% Similarity=0.626 Sum_probs=3.8
Q ss_pred CCCeEEEE
Q 024054 152 QGEIVALI 159 (273)
Q Consensus 152 ~G~~Vv~L 159 (273)
+|++++++
T Consensus 8 ~g~di~ii 15 (124)
T PF02780_consen 8 EGADITII 15 (124)
T ss_dssp SSSSEEEE
T ss_pred CCCCEEEE
Confidence 34444444
No 75
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=28.30 E-value=3.9e+02 Score=23.03 Aligned_cols=48 Identities=21% Similarity=0.224 Sum_probs=28.6
Q ss_pred CCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchH-HHHHHHhCCCCC
Q 024054 152 QGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASA-FVAALSASGLAT 205 (273)
Q Consensus 152 ~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~vevIPGISS-~~aAaA~lG~pl 205 (273)
++|+|+++ =.| +-+......|++.|++|.|---..| -...|-.-|+..
T Consensus 3 ~~k~IAVi-GyG-----sQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v 51 (165)
T PF07991_consen 3 KGKTIAVI-GYG-----SQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEV 51 (165)
T ss_dssp CTSEEEEE-S-S-----HHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-EC
T ss_pred CCCEEEEE-CCC-----hHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCee
Confidence 57899998 233 6677888888999887754433322 344445556643
No 76
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=28.23 E-value=2.4e+02 Score=26.26 Aligned_cols=56 Identities=23% Similarity=0.199 Sum_probs=37.1
Q ss_pred HHHHHHHHHhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHh
Q 024054 142 REQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSA 200 (273)
Q Consensus 142 ~~~~ii~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~vevIPGISS~~aAaA~ 200 (273)
....+..+.++|++.-++..-+.|...| ..+.+.|.+.|+++.+||= |++.+...+
T Consensus 128 v~~~l~~a~~~~~~f~V~v~EsrP~~~G--~~~a~~L~~~gI~vtlI~D-sa~~~~m~~ 183 (301)
T TIGR00511 128 ALSVIKTAFEQGKDIEVIATETRPRKQG--HITAKELRDYGIPVTLIVD-SAVRYFMKE 183 (301)
T ss_pred HHHHHHHHHHcCCcEEEEEecCCCcchH--HHHHHHHHHCCCCEEEEeh-hHHHHHHHh
Confidence 3344555556777543333568887654 7788999999999999986 344444443
No 77
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=28.19 E-value=2.2e+02 Score=27.00 Aligned_cols=72 Identities=15% Similarity=0.187 Sum_probs=50.1
Q ss_pred hcccccccCCCChhhhhHhhhhcCCCCCCCCeEEEEecCCCCccchHHHHHHHHhhCC----EEEEcCCCCCHHHHhhcc
Q 024054 51 LLLCSCSQSQTSPDFSNLILEQSSKRGPLEPGLYLVATPIGNLEDITLRALRVLKSAN----VILSEDTRHSGKLLQYYN 126 (273)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~iVGvGPGdpdlLTlrA~~~L~~AD----vV~~~~~~~~~~ll~~~~ 126 (273)
.+|+-|.|.--.+.|.+.-.+.... +-+=.+|-.|-.||.+||.|-+..|.+-+ +|++......+.+.+.+.
T Consensus 132 ~~~lGp~y~~lr~eF~~~r~~~~~r----~~r~ilI~lGGsDpk~lt~kvl~~L~~~~~nl~iV~gs~~p~l~~l~k~~~ 207 (318)
T COG3980 132 RYYLGPGYAPLRPEFYALREENTER----PKRDILITLGGSDPKNLTLKVLAELEQKNVNLHIVVGSSNPTLKNLRKRAE 207 (318)
T ss_pred EEEecCCceeccHHHHHhHHHHhhc----chheEEEEccCCChhhhHHHHHHHhhccCeeEEEEecCCCcchhHHHHHHh
Confidence 4577788877788898876666443 23446888998999999999999999887 455533333334444443
No 78
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=28.06 E-value=2.4e+02 Score=26.40 Aligned_cols=57 Identities=21% Similarity=0.166 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHh
Q 024054 141 QREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSA 200 (273)
Q Consensus 141 ~~~~~ii~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~vevIPGISS~~aAaA~ 200 (273)
.....|.++.++|++.-++..-+.|...| ..+.+.|.+.|+++.+||= |++.+...+
T Consensus 132 tv~~~l~~A~~~~k~~~V~v~EsrP~~~G--~~~a~~L~~~GI~vtlI~D-sav~~~m~~ 188 (310)
T PRK08535 132 AALSVIKTAHEQGKDIEVIATETRPRNQG--HITAKELAEYGIPVTLIVD-SAVRYFMKD 188 (310)
T ss_pred HHHHHHHHHHHCCCeEEEEEecCCchhhH--HHHHHHHHHCCCCEEEEeh-hHHHHHHHh
Confidence 33445555556776543333568897664 7788899999999999997 444444444
No 79
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=27.92 E-value=3e+02 Score=26.26 Aligned_cols=95 Identities=15% Similarity=0.206 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHhCCCeEEEEccCCCCCCCchHHHHHHHhhhC-CCCE--EEEccchHHHHHHHhCCCCCccEEEEEEeC
Q 024054 139 ESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDE-KIPV--VPIPGASAFVAALSASGLATDEFTFVGFLP 215 (273)
Q Consensus 139 ~~~~~~~ii~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~-gi~v--evIPGISS~~aAaA~lG~pl~~~~~ig~lp 215 (273)
..|...++..-+.+|-+++.+ +.|-|.+ .+++.++++ +.++ -=|.|--|+.-||+..|+==.+
T Consensus 232 ~~EAlrE~~lD~~EGAD~lMV-KPal~YL-----DIi~~vk~~~~lP~~AYqVSGEYaMikAAa~nGwide~-------- 297 (330)
T COG0113 232 RREALREIELDIEEGADILMV-KPALPYL-----DIIRRVKEEFNLPVAAYQVSGEYAMIKAAAQNGWIDEE-------- 297 (330)
T ss_pred HHHHHHHHHhhHhcCCcEEEE-cCCchHH-----HHHHHHHHhcCCCeEEEecchHHHHHHHHHHcCCcchH--------
Confidence 345555665566899999999 8776643 355555443 3444 4468999999999999982000
Q ss_pred CCCcchHHHHHhhhCCCCeEEEEeCcccHHHHHHHHhh
Q 024054 216 KHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSL 253 (273)
Q Consensus 216 ~~~~~r~~~L~~l~~~~~tlVl~~~~~~l~~i~~~L~e 253 (273)
+--.+.|..+++++..+||. +..+++.+.|.+
T Consensus 298 ---~~vlEsL~~~kRAGAd~IiT---YfA~e~a~~L~~ 329 (330)
T COG0113 298 ---KVVLESLTSIKRAGADLIIT---YFAKEVAEWLKE 329 (330)
T ss_pred ---HHHHHHHHHHHhcCCCEEEe---ecHHHHHHHhhc
Confidence 01135667777887778775 566777776653
No 80
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=27.46 E-value=3.7e+02 Score=22.57 Aligned_cols=56 Identities=14% Similarity=0.281 Sum_probs=41.5
Q ss_pred EccchHHHHHHHhCCCCCccEEEEEEeCCCCcchHHHHHhhhCCCCeEEEEeCcccHHHHHHH
Q 024054 188 IPGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEE 250 (273)
Q Consensus 188 IPGISS~~aAaA~lG~pl~~~~~ig~lp~~~~~r~~~L~~l~~~~~tlVl~~~~~~l~~i~~~ 250 (273)
-|-+--+..++.++|++.++..++| ++..++....+.+-..+.+..+..+.+.++.
T Consensus 141 KP~p~~~~~~~~~~~~~p~~~l~vg-------D~~~di~aA~~aG~~~i~~~~~~~~~~~l~~ 196 (199)
T PRK09456 141 KPEARIYQHVLQAEGFSAADAVFFD-------DNADNIEAANALGITSILVTDKQTIPDYFAK 196 (199)
T ss_pred CCCHHHHHHHHHHcCCChhHeEEeC-------CCHHHHHHHHHcCCEEEEecCCccHHHHHHh
Confidence 4778889999999999998887773 2244566666677777777777777766654
No 81
>PRK12361 hypothetical protein; Provisional
Probab=27.21 E-value=3.1e+02 Score=27.51 Aligned_cols=50 Identities=26% Similarity=0.245 Sum_probs=35.5
Q ss_pred HhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCC
Q 024054 150 LKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLA 204 (273)
Q Consensus 150 l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~vevIPGISS~~aAaA~lG~p 204 (273)
..++.+++++ ..|| |+..+.++.+.+.++++-++|+-|.=..|=+..|++
T Consensus 294 ~~~~~d~Viv-~GGD----GTl~ev~~~l~~~~~~lgiiP~GTgNdfAr~L~gi~ 343 (547)
T PRK12361 294 RKAGADIVIA-CGGD----GTVTEVASELVNTDITLGIIPLGTANALSHALFGLG 343 (547)
T ss_pred HhcCCCEEEE-ECCC----cHHHHHHHHHhcCCCCEEEecCCchhHHHHHhcCCC
Confidence 3456667777 5999 677778888877788899999998555444433664
No 82
>PRK11914 diacylglycerol kinase; Reviewed
Probab=27.14 E-value=2.2e+02 Score=26.07 Aligned_cols=51 Identities=18% Similarity=0.214 Sum_probs=36.3
Q ss_pred HHhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCC
Q 024054 149 RLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLAT 205 (273)
Q Consensus 149 ~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~vevIPGISS~~aAaA~lG~pl 205 (273)
...++-+++++ ..|| |+..+.++.+...++++-++|+-| .+..|-.+|+|.
T Consensus 60 ~~~~~~d~vvv-~GGD----GTi~evv~~l~~~~~~lgiiP~GT-~NdfAr~lg~~~ 110 (306)
T PRK11914 60 ALAKGTDALVV-VGGD----GVISNALQVLAGTDIPLGIIPAGT-GNDHAREFGIPT 110 (306)
T ss_pred HHhcCCCEEEE-ECCc----hHHHHHhHHhccCCCcEEEEeCCC-cchhHHHcCCCC
Confidence 33455566667 4899 666677777777788999999887 444446778764
No 83
>PF02006 DUF137: Protein of unknown function DUF137; InterPro: IPR002855 The archaeal proteins in this family have no known function.
Probab=27.07 E-value=97 Score=26.94 Aligned_cols=48 Identities=31% Similarity=0.340 Sum_probs=35.8
Q ss_pred EEEEccchHHHHHHHhCCCCCccEEEEEEeCCCCcchHHHHHhhhCCCCeEEEE
Q 024054 185 VVPIPGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFY 238 (273)
Q Consensus 185 vevIPGISS~~aAaA~lG~pl~~~~~ig~lp~~~~~r~~~L~~l~~~~~tlVl~ 238 (273)
.+.+||.++-=.-.+.-|+--.|+.++ |...++|.+.|.+. +.+++-.
T Consensus 69 ~~~ip~L~~~R~~v~~~GIy~ADVVLV---PLEDGDR~EAL~~m---GK~VIaI 116 (178)
T PF02006_consen 69 SERIPGLDHERAKVSKEGIYSADVVLV---PLEDGDRTEALVKM---GKTVIAI 116 (178)
T ss_pred cccCCCCCCccceECcccceeccEEEe---ccCCCcHHHHHHHc---CCeEEEE
Confidence 356899999988888899987888777 88888887766553 4444443
No 84
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=26.63 E-value=2.1e+02 Score=22.86 Aligned_cols=47 Identities=19% Similarity=0.220 Sum_probs=32.2
Q ss_pred HHHHHhCCCeEEEEccCCCCCCCchHHHHHHHhhhC--CCCEEEEccchH
Q 024054 146 VLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDE--KIPVVPIPGASA 193 (273)
Q Consensus 146 ii~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~--gi~vevIPGISS 193 (273)
+......+.....+ ..|||+......++++.+.+. ++.+.+.-....
T Consensus 37 ~~~~~~~~~~~i~~-~ggep~~~~~~~~~i~~~~~~~~~~~~~i~T~~~~ 85 (204)
T cd01335 37 VLEAKERGVEVVIL-TGGEPLLYPELAELLRRLKKELPGFEISIETNGTL 85 (204)
T ss_pred HHHHHhcCceEEEE-eCCcCCccHhHHHHHHHHHhhCCCceEEEEcCccc
Confidence 33334456667777 489999998777788888877 677766655443
No 85
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=26.29 E-value=1.1e+02 Score=27.42 Aligned_cols=50 Identities=18% Similarity=0.160 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccc
Q 024054 141 QREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGA 191 (273)
Q Consensus 141 ~~~~~ii~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~vevIPGI 191 (273)
.-.+.....++.|++|.+++ .|...-.....++.+.+++.|..+.+-+|-
T Consensus 49 ~H~e~a~~aL~aGkhVl~~s-~gAlad~e~~~~l~~aA~~~g~~l~i~sGa 98 (229)
T TIGR03855 49 AVKEYAEKILKNGKDLLIMS-VGALADRELRERLREVARSSGRKVYIPSGA 98 (229)
T ss_pred HHHHHHHHHHHCCCCEEEEC-CcccCCHHHHHHHHHHHHhcCCEEEEChHH
Confidence 34566777889999999995 665444455677888888888877665543
No 86
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=25.86 E-value=75 Score=27.20 Aligned_cols=102 Identities=11% Similarity=0.128 Sum_probs=43.1
Q ss_pred CCCeEEEEecCCCCcc-chHHHHHHHHhhCCEEEEcCCCCCHHHHhhccCCCc-EE-ecCCCC-------HHHHHHHHHH
Q 024054 79 LEPGLYLVATPIGNLE-DITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTP-LL-SYHKFN-------ESQREQTVLN 148 (273)
Q Consensus 79 ~~g~l~iVGvGPGdpd-lLTlrA~~~L~~ADvV~~~~~~~~~~ll~~~~~~~~-~i-~~~~~~-------~~~~~~~ii~ 148 (273)
..+.++++|.+||--+ .+-...++.+..-+.|+.... .++.+-++.. .. ..+... .....+.+++
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D-----~~r~~~p~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 87 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDAD-----EFRQFHPDYDELLKADPDEASELTQKEASRLAEKLIE 87 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GG-----GGGGGSTTHHHHHHHHCCCTHHHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehH-----HHHHhccchhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 3578999999999655 222333333323466655311 1222111100 00 000000 1123445554
Q ss_pred HH-hCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEE
Q 024054 149 RL-KQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPI 188 (273)
Q Consensus 149 ~l-~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~vevI 188 (273)
.+ .++.++++=+...+| +....+++.+++.|++++++
T Consensus 88 ~a~~~~~nii~E~tl~~~---~~~~~~~~~~k~~GY~v~l~ 125 (199)
T PF06414_consen 88 YAIENRYNIIFEGTLSNP---SKLRKLIREAKAAGYKVELY 125 (199)
T ss_dssp HHHHCT--EEEE--TTSS---HHHHHHHHHHHCTT-EEEEE
T ss_pred HHHHcCCCEEEecCCCCh---hHHHHHHHHHHcCCceEEEE
Confidence 44 667776664222222 33444788888888877654
No 87
>PRK05637 anthranilate synthase component II; Provisional
Probab=25.71 E-value=55 Score=28.82 Aligned_cols=6 Identities=33% Similarity=0.573 Sum_probs=3.3
Q ss_pred ccchHH
Q 024054 189 PGASAF 194 (273)
Q Consensus 189 PGISS~ 194 (273)
||+.+.
T Consensus 52 gGPg~~ 57 (208)
T PRK05637 52 PGPGHP 57 (208)
T ss_pred CCCCCH
Confidence 555554
No 88
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=25.71 E-value=3.2e+02 Score=28.71 Aligned_cols=82 Identities=11% Similarity=0.203 Sum_probs=48.2
Q ss_pred HHHHHhhCCEEEEcCCCCCH-HHHh---hccCCCcEEe-----cCCCCHHHHHHHHHHHHhCCCeEEEEcc---CCCCCC
Q 024054 100 ALRVLKSANVILSEDTRHSG-KLLQ---YYNIKTPLLS-----YHKFNESQREQTVLNRLKQGEIVALISD---AGTPGI 167 (273)
Q Consensus 100 A~~~L~~ADvV~~~~~~~~~-~ll~---~~~~~~~~i~-----~~~~~~~~~~~~ii~~l~~G~~Vv~LS~---~GDP~i 167 (273)
--++|++=|+++... +.+- .+++ ....+..+.. |.-.....+++.+++++++|+.|.++.+ ..|-
T Consensus 323 iF~~I~~~DiLLh~P-Y~Sf~~v~~~i~~Aa~DP~V~~Ik~tlYr~~~~s~ii~aL~~Aa~~Gk~V~v~veLkArfde-- 399 (672)
T TIGR03705 323 IFDAIRKKDILLHHP-YESFDPVVEFLRQAAEDPDVLAIKQTLYRTSKDSPIIDALIEAAENGKEVTVVVELKARFDE-- 399 (672)
T ss_pred HHHHHhhcCEEEECC-ccCHHHHHHHHHHHhcCCCceEEEEEEEEecCCcHHHHHHHHHHHcCCEEEEEEEehhhccc--
Confidence 467888999999963 5442 2333 2222222221 2111246788999999999999999864 2222
Q ss_pred CchHHHHHHHhhhCCCCE
Q 024054 168 SDPGTELAKLCVDEKIPV 185 (273)
Q Consensus 168 ys~~~~l~~~l~~~gi~v 185 (273)
..-....+.+.+.|+.|
T Consensus 400 -~~ni~wa~~le~aG~~v 416 (672)
T TIGR03705 400 -EANIRWARRLEEAGVHV 416 (672)
T ss_pred -hhhHHHHHHHHHcCCEE
Confidence 12233456777788544
No 89
>COG1736 DPH2 Diphthamide synthase subunit DPH2 [Translation, ribosomal structure and biogenesis]
Probab=25.54 E-value=4e+02 Score=25.67 Aligned_cols=64 Identities=16% Similarity=0.033 Sum_probs=41.3
Q ss_pred CHHHHHHHHHHHHhC-CCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCC
Q 024054 138 NESQREQTVLNRLKQ-GEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLA 204 (273)
Q Consensus 138 ~~~~~~~~ii~~l~~-G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~vevIPGISS~~aAaA~lG~p 204 (273)
+.+..++.....+.. +++|+++ ++.-++.....+.+.++..|..+++.+|=+...+..=.+|..
T Consensus 106 d~~~~~~~~~~~l~~~~r~I~li---~t~q~~~~l~~~k~~L~~~g~~v~i~~~~~r~~~~gqVLGC~ 170 (347)
T COG1736 106 DVDLVVLEATRELKKGSRRIGLI---TTAQHVHLLEEVKEILEGRGYEVVIGRGQTRPAYPGQVLGCN 170 (347)
T ss_pred chhHHHHHhhHhhccCCceEEEE---ecccchhHHHHHHHHhhcCCeEEEEeCCCCcccCcceeeccc
Confidence 344444444444444 4458887 456777777888888888998889888887644443344443
No 90
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=25.52 E-value=1.6e+02 Score=30.79 Aligned_cols=85 Identities=13% Similarity=0.192 Sum_probs=51.0
Q ss_pred HHHHHhhCCEEEEcCCCCCH-HHHh---hccCCCcEEec-----CCCCHHHHHHHHHHHHhCCCeEEEEccCCCCCCCch
Q 024054 100 ALRVLKSANVILSEDTRHSG-KLLQ---YYNIKTPLLSY-----HKFNESQREQTVLNRLKQGEIVALISDAGTPGISDP 170 (273)
Q Consensus 100 A~~~L~~ADvV~~~~~~~~~-~ll~---~~~~~~~~i~~-----~~~~~~~~~~~ii~~l~~G~~Vv~LS~~GDP~iys~ 170 (273)
.-++|++-|++++. .+.+- .+++ ....+-.++.+ ...+...+++.+++++++||.|.++.. +-.+
T Consensus 336 ~F~aIre~DiLlhH-PYeSF~~Vv~fl~qAA~DP~VLAIKqTLYRt~~dSpIV~ALi~AA~nGKqVtvlVE-----LkAR 409 (696)
T COG0855 336 IFDAIREGDILLHH-PYESFEPVVEFLRQAAADPDVLAIKQTLYRTSKDSPIVRALIDAAENGKQVTVLVE-----LKAR 409 (696)
T ss_pred HHHHHhhcCeEEEC-chhhhHHHHHHHHHhhcCCCeEEEEEEEEecCCCCHHHHHHHHHHHcCCeEEEEEE-----Ehhh
Confidence 57899999999996 34432 2332 22223333322 222445688999999999999999852 1122
Q ss_pred HHH-----HHHHhhhCCCCEEEEccch
Q 024054 171 GTE-----LAKLCVDEKIPVVPIPGAS 192 (273)
Q Consensus 171 ~~~-----l~~~l~~~gi~vevIPGIS 192 (273)
+.+ -.+.|.+.| ++||=|+.
T Consensus 410 FDEE~NI~WAk~LE~AG--vhVvyG~~ 434 (696)
T COG0855 410 FDEEANIHWAKRLERAG--VHVVYGVV 434 (696)
T ss_pred cChhhhhHHHHHHHhCC--cEEEeccc
Confidence 222 245666667 45566654
No 91
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=25.15 E-value=1.8e+02 Score=25.10 Aligned_cols=36 Identities=22% Similarity=0.315 Sum_probs=18.3
Q ss_pred HHHHHhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCC
Q 024054 146 VLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKI 183 (273)
Q Consensus 146 ii~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi 183 (273)
+.+.++.||.-.++ .-|-++-.--.++.+.+.++|.
T Consensus 93 ~letL~l~KPlivV--vNd~LMDNHQ~ELA~qL~~egy 128 (170)
T KOG3349|consen 93 CLETLRLGKPLIVV--VNDSLMDNHQLELAKQLAEEGY 128 (170)
T ss_pred HHHHHHcCCCEEEE--eChHhhhhHHHHHHHHHHhcCc
Confidence 34444555554443 2444555555556666665553
No 92
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=25.05 E-value=5.3e+02 Score=25.10 Aligned_cols=49 Identities=16% Similarity=0.224 Sum_probs=30.1
Q ss_pred HHHHHHHHHh----CCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchH
Q 024054 142 REQTVLNRLK----QGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASA 193 (273)
Q Consensus 142 ~~~~ii~~l~----~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~vevIPGISS 193 (273)
..+.+++.+. +...|-++ .| ....+-..++.+.+.+.|+++.++|.+|.
T Consensus 140 a~~al~~~~~~~~~~~~~VNli--g~-~~~~~D~~ei~~lL~~~Gl~~~~~~d~s~ 192 (429)
T cd03466 140 AVRSIVKNIAVDPDKIEKINVI--AG-MMSPADIREIKEILREFGIEYILLPDTSE 192 (429)
T ss_pred HHHHHHHHhccCCCCCCcEEEE--CC-CCChhHHHHHHHHHHHcCCCeEEecCccc
Confidence 3445555432 22347766 23 23333457788888888999998887764
No 93
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=24.88 E-value=3.2e+02 Score=25.74 Aligned_cols=99 Identities=12% Similarity=0.130 Sum_probs=54.4
Q ss_pred CeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHH--HHhhccCCCcEEecCCCCHHHHHHHHHHHHh-CCCeEE
Q 024054 81 PGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGK--LLQYYNIKTPLLSYHKFNESQREQTVLNRLK-QGEIVA 157 (273)
Q Consensus 81 g~l~iVGvGPGdpdlLTlrA~~~L~~ADvV~~~~~~~~~~--ll~~~~~~~~~i~~~~~~~~~~~~~ii~~l~-~G~~Vv 157 (273)
+++.++|.|| -.+++..+.+..-.+.+|+.+. ...+ +.+.+. ....+..... +.....+.+.-. .|-+++
T Consensus 170 ~~V~V~GaGp--IGLla~~~a~~~Ga~~Viv~d~--~~~Rl~~A~~~~-g~~~~~~~~~--~~~~~~~~~~t~g~g~D~v 242 (350)
T COG1063 170 GTVVVVGAGP--IGLLAIALAKLLGASVVIVVDR--SPERLELAKEAG-GADVVVNPSE--DDAGAEILELTGGRGADVV 242 (350)
T ss_pred CEEEEECCCH--HHHHHHHHHHHcCCceEEEeCC--CHHHHHHHHHhC-CCeEeecCcc--ccHHHHHHHHhCCCCCCEE
Confidence 3799999998 7889999999998899999842 2222 222211 2222222211 122233333322 257888
Q ss_pred EEccCCCCCCCchHHHHHHHhhhCCCCEEEEccch
Q 024054 158 LISDAGTPGISDPGTELAKLCVDEKIPVVPIPGAS 192 (273)
Q Consensus 158 ~LS~~GDP~iys~~~~l~~~l~~~gi~vevIPGIS 192 (273)
+- .+|.|. .....++.++..| ..++-|+.
T Consensus 243 ie-~~G~~~---~~~~ai~~~r~gG--~v~~vGv~ 271 (350)
T COG1063 243 IE-AVGSPP---ALDQALEALRPGG--TVVVVGVY 271 (350)
T ss_pred EE-CCCCHH---HHHHHHHHhcCCC--EEEEEecc
Confidence 88 478443 3344555555555 34444554
No 94
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=24.76 E-value=1.9e+02 Score=27.87 Aligned_cols=31 Identities=6% Similarity=0.213 Sum_probs=28.4
Q ss_pred CeEEEEecCCCCccchHHHHHHHHhhCCEEEEc
Q 024054 81 PGLYLVATPIGNLEDITLRALRVLKSANVILSE 113 (273)
Q Consensus 81 g~l~iVGvGPGdpdlLTlrA~~~L~~ADvV~~~ 113 (273)
-++-+.|.|| -.++|..+.+++-.+|+|+.+
T Consensus 171 s~vLV~GAGP--IGl~t~l~Aka~GA~~VVi~d 201 (354)
T KOG0024|consen 171 SKVLVLGAGP--IGLLTGLVAKAMGASDVVITD 201 (354)
T ss_pred CeEEEECCcH--HHHHHHHHHHHcCCCcEEEee
Confidence 3699999999 689999999999999999996
No 95
>PF01933 UPF0052: Uncharacterised protein family UPF0052; InterPro: IPR002882 This entry contains LPPG:Fo 2-phospho-L-lactate transferase (CofD) and related sequences of unknown function belong to unidentified protein family UPF0052. CofD catalyses the fourth step in the biosynthesis of coenzyme F420, which is the transfer of the 2-phospholactate moiety from lactyl (2) diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin (FO) with the formation of the L-lactyl phosphodiester of 7,8-didemethyl-8-hydroxy-5-deazariboflavin (F420-0) and GMP. F420 is a flavin derivative found in methanogens, Mycobacteria, and several other lineages. This enzyme is characterised so far in Methanocaldococcus jannaschii (Methanococcus jannaschii) [] but appears restricted to F420-containing species and is predicted to carry out the same function in these other species. ; PDB: 2HZB_A 2O2Z_C 3CGW_A 3C3E_D 3C3D_D 2PPV_A 2P0Y_A 2Q7X_B.
Probab=24.56 E-value=1.1e+02 Score=28.76 Aligned_cols=32 Identities=16% Similarity=0.257 Sum_probs=20.9
Q ss_pred CeEEEEecCCCCccchHHHHHHHHhhCCEEEEcC
Q 024054 81 PGLYLVATPIGNLEDITLRALRVLKSANVILSED 114 (273)
Q Consensus 81 g~l~iVGvGPGdpdlLTlrA~~~L~~ADvV~~~~ 114 (273)
.++++.|. |.++. .+.+++++|++||+|++..
T Consensus 160 ~~v~~~~~-~~~~~-~~p~~l~AI~~AD~IiigP 191 (300)
T PF01933_consen 160 RRVFLEGA-PEEAK-ANPEALEAIEEADLIIIGP 191 (300)
T ss_dssp EEEEEECT-STT---B-HHHHHHHHH-SEEEE-S
T ss_pred cEEEEecC-ccccC-CCHHHHHHHHhCCEEEEcC
Confidence 35777777 54444 7899999999999777753
No 96
>TIGR01826 CofD_related conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam model pfam01933.
Probab=24.54 E-value=5e+02 Score=24.54 Aligned_cols=29 Identities=14% Similarity=0.232 Sum_probs=21.3
Q ss_pred eEEEEecCCCCccchHHHHHHHHhhCCEEEEcC
Q 024054 82 GLYLVATPIGNLEDITLRALRVLKSANVILSED 114 (273)
Q Consensus 82 ~l~iVGvGPGdpdlLTlrA~~~L~~ADvV~~~~ 114 (273)
+|++-+ -++ ..+.+++++|++||+|++..
T Consensus 152 ~v~l~~---~~~-~a~~~al~AI~~ADlIvlgP 180 (310)
T TIGR01826 152 RVRLEP---EDV-PALREAVEAIREADLIILGP 180 (310)
T ss_pred EEEEeC---CCC-CCCHHHHHHHHhCCEEEECC
Confidence 455544 233 46799999999999998864
No 97
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=24.20 E-value=5.5e+02 Score=24.41 Aligned_cols=30 Identities=33% Similarity=0.399 Sum_probs=20.0
Q ss_pred CCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEE
Q 024054 152 QGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVP 187 (273)
Q Consensus 152 ~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~vev 187 (273)
+|++|+++ +.-..|..+.+.+.+.|+++.+
T Consensus 16 ~gktIgII------G~GsmG~AlA~~L~~sG~~Vvv 45 (330)
T PRK05479 16 KGKKVAII------GYGSQGHAHALNLRDSGVDVVV 45 (330)
T ss_pred CCCEEEEE------eeHHHHHHHHHHHHHCCCEEEE
Confidence 46778887 2225567777777777776654
No 98
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=24.15 E-value=2.4e+02 Score=25.69 Aligned_cols=44 Identities=18% Similarity=0.147 Sum_probs=29.9
Q ss_pred HHHHHH-hCCCeEEEEccCCCCCCCchHHHHHHHhhhCCC-CEEEEc
Q 024054 145 TVLNRL-KQGEIVALISDAGTPGISDPGTELAKLCVDEKI-PVVPIP 189 (273)
Q Consensus 145 ~ii~~l-~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi-~vevIP 189 (273)
.+++.. ..|-+-+.++ .|.|++.....++++.+++.|+ ++.+.-
T Consensus 47 ~~i~~~~~~gi~~I~~t-GGEPll~~~l~~iv~~l~~~g~~~v~i~T 92 (302)
T TIGR02668 47 RIVRVASEFGVRKVKIT-GGEPLLRKDLIEIIRRIKDYGIKDVSMTT 92 (302)
T ss_pred HHHHHHHHcCCCEEEEE-CcccccccCHHHHHHHHHhCCCceEEEEc
Confidence 334433 3454445553 7999999888888888888777 666655
No 99
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A.
Probab=23.75 E-value=1.4e+02 Score=23.37 Aligned_cols=43 Identities=19% Similarity=0.208 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHh-CCCeEEEEccCCCCCC---CchHHHHHHHhhhCCC
Q 024054 140 SQREQTVLNRLK-QGEIVALISDAGTPGI---SDPGTELAKLCVDEKI 183 (273)
Q Consensus 140 ~~~~~~ii~~l~-~G~~Vv~LS~~GDP~i---ys~~~~l~~~l~~~gi 183 (273)
.+..+++++.+. .+..-+.+ ..|+|++ ++...++++.+++.+.
T Consensus 38 ~~~~~~ii~~~~~~~~~~i~l-~GGEPll~~~~~~l~~i~~~~k~~~~ 84 (139)
T PF13353_consen 38 EEIIEEIIEELKNYGIKGIVL-TGGEPLLHENYDELLEILKYIKEKFP 84 (139)
T ss_dssp HHHHHHHCHHHCCCCCCEEEE-ECSTGGGHHSHHHHHHHHHHHHHTT-
T ss_pred chhhhhhhhHHhcCCceEEEE-cCCCeeeeccHhHHHHHHHHHHHhCC
Confidence 455566666663 34444445 3799999 6777888888888876
No 100
>PRK01415 hypothetical protein; Validated
Probab=23.34 E-value=4.6e+02 Score=23.90 Aligned_cols=105 Identities=14% Similarity=0.054 Sum_probs=50.4
Q ss_pred chH-HHHHHHHhhCCEEEEcCCCCCHHHHhhccCCCcEEecCCCCH-HHHHHHHHHHHhCCCeEEEEccCCCCCCCchHH
Q 024054 95 DIT-LRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNE-SQREQTVLNRLKQGEIVALISDAGTPGISDPGT 172 (273)
Q Consensus 95 lLT-lrA~~~L~~ADvV~~~~~~~~~~ll~~~~~~~~~i~~~~~~~-~~~~~~ii~~l~~G~~Vv~LS~~GDP~iys~~~ 172 (273)
.|| ..+.+.|++-|+++. |.|...+.-...-+++.-+......+ .+..+.. ....++++|++.|.+| -+..
T Consensus 113 ~i~p~e~~~ll~~~~~vvI-DVRn~~E~~~Ghi~gAinip~~~f~e~~~~~~~~-~~~~k~k~Iv~yCtgG-----iRs~ 185 (247)
T PRK01415 113 YIEPKDWDEFITKQDVIVI-DTRNDYEVEVGTFKSAINPNTKTFKQFPAWVQQN-QELLKGKKIAMVCTGG-----IRCE 185 (247)
T ss_pred ccCHHHHHHHHhCCCcEEE-ECCCHHHHhcCCcCCCCCCChHHHhhhHHHHhhh-hhhcCCCeEEEECCCC-----hHHH
Confidence 344 355677887888888 45554443221111211111111111 1111111 2234677888886544 2334
Q ss_pred HHHHHhhhCCCC-E-EEEccchHHHHHHHhCCCCCc
Q 024054 173 ELAKLCVDEKIP-V-VPIPGASAFVAALSASGLATD 206 (273)
Q Consensus 173 ~l~~~l~~~gi~-v-evIPGISS~~aAaA~lG~pl~ 206 (273)
.....+.+.|++ | .+--|+.+..-....-+--|.
T Consensus 186 kAa~~L~~~Gf~~Vy~L~GGi~~w~~~~~~~~~~w~ 221 (247)
T PRK01415 186 KSTSLLKSIGYDEVYHLKGGILQYLEDTQNKNNLWQ 221 (247)
T ss_pred HHHHHHHHcCCCcEEEechHHHHHHHhcccCCCeee
Confidence 455666777874 5 455666666544333333344
No 101
>PF07966 A1_Propeptide: A1 Propeptide ; InterPro: IPR012848 Most eukaryotic endopeptidases (MEROPS peptidase family A1) are synthesised with signal and propeptides. The animal pepsin-like endopeptidase propeptides form a distinct family of propeptides, which contain a conserved motif approximately 30 residues long. In pepsinogen A, the first 11 residues of the mature pepsin sequence are displaced by residues of the propeptide. The propeptide contains two helices that block the active site cleft, in particular the conserved Asp11 residue, in pepsin, hydrogen bonds to a conserved Arg residue in the propeptide. This hydrogen bond stabilises the propeptide conformation and is probably responsible for triggering the conversion of pepsinogen to pepsin under acidic conditions [, ]. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1AVF_Q 1HTR_P 3PSG_A 2PSG_A 3VCM_Q 1TZS_P.
Probab=23.32 E-value=27 Score=21.13 Aligned_cols=21 Identities=14% Similarity=0.245 Sum_probs=12.9
Q ss_pred cchhhhHHHHhhhCCCccccc
Q 024054 5 QRLPLMANSLATTGLSKTSWQ 25 (273)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~ 25 (273)
.++|+||+.|...|+...-|.
T Consensus 7 ~K~kS~R~~L~e~g~~~~flk 27 (29)
T PF07966_consen 7 KKFKSMRETLREKGTLEEFLK 27 (29)
T ss_dssp EE---HHHHHHHTT-HHHHHC
T ss_pred cCCchHHHHHHHcCchHHHHH
Confidence 478999999999997655443
No 102
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=23.27 E-value=3.2e+02 Score=26.40 Aligned_cols=59 Identities=14% Similarity=0.264 Sum_probs=34.6
Q ss_pred HHHHhhCCEEEEcCCCCC----HHHHhhccCCCcEEe-----cCCCCHHHHHHHHHHHHhCCCeEEEEc
Q 024054 101 LRVLKSANVILSEDTRHS----GKLLQYYNIKTPLLS-----YHKFNESQREQTVLNRLKQGEIVALIS 160 (273)
Q Consensus 101 ~~~L~~ADvV~~~~~~~~----~~ll~~~~~~~~~i~-----~~~~~~~~~~~~ii~~l~~G~~Vv~LS 160 (273)
-+.|++-|+++..+ +.+ -++++....+..+.. |.-.....+++.+++++++||.|.++.
T Consensus 3 f~~i~~~DiLlh~P-Y~sf~~vv~fl~eAA~DP~V~aIk~TLYR~a~~S~iv~aLi~AA~nGK~Vtv~v 70 (352)
T PF13090_consen 3 FEQIRKKDILLHHP-YESFDPVVDFLREAAEDPDVLAIKITLYRVASNSPIVNALIEAAENGKQVTVLV 70 (352)
T ss_dssp HHHHHHS-EEEECT-TB-TCHHHHHHHHHCC-TTEEEEEEEESSS-TT-HHHHHHHHHHHTT-EEEEEE
T ss_pred hHHhhcCCEEEECC-ccccHHHHHHHHHHhcCCCccEEEEEEEecCCCCHHHHHHHHHHHcCCEEEEEE
Confidence 36788999999863 432 123333333434332 222244578899999999999999985
No 103
>PRK07239 bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated
Probab=23.25 E-value=4.4e+02 Score=24.92 Aligned_cols=30 Identities=20% Similarity=0.225 Sum_probs=20.1
Q ss_pred HHHHHhhhCCCCEEEEccchHHHHHHHhCC
Q 024054 173 ELAKLCVDEKIPVVPIPGASAFVAALSASG 202 (273)
Q Consensus 173 ~l~~~l~~~gi~vevIPGISS~~aAaA~lG 202 (273)
.+.+.+.+.++++-+.-..|++...+..++
T Consensus 192 ~~~~~l~~~~~d~v~FtS~stv~~f~~~l~ 221 (381)
T PRK07239 192 RLVDAIASRGLDAVTFTSAPAVAALLERAR 221 (381)
T ss_pred HHHHHHHcCCccEEEEcCHHHHHHHHHHHH
Confidence 455556555677777777777777766654
No 104
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=23.22 E-value=1.3e+02 Score=24.03 Aligned_cols=46 Identities=13% Similarity=-0.008 Sum_probs=36.3
Q ss_pred CeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhC
Q 024054 154 EIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSAS 201 (273)
Q Consensus 154 ~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~vevIPGISS~~aAaA~l 201 (273)
|++.+. .+|-...+. ..++++.+.+.|.++.++--.++....-...
T Consensus 1 k~i~l~-vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~A~~~~~~~~ 46 (129)
T PF02441_consen 1 KRILLG-VTGSIAAYK-APDLLRRLKRAGWEVRVVLSPSAERFVTPEG 46 (129)
T ss_dssp -EEEEE-E-SSGGGGG-HHHHHHHHHTTTSEEEEEESHHHHHHSHHHG
T ss_pred CEEEEE-EECHHHHHH-HHHHHHHHhhCCCEEEEEECCcHHHHhhhhc
Confidence 467777 588888887 7788899999999999999888887777766
No 105
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=23.16 E-value=1.6e+02 Score=30.55 Aligned_cols=32 Identities=13% Similarity=-0.119 Sum_probs=21.2
Q ss_pred HHHHHhhhCCCCeEEEEeCccc----HHHHHHHHhh
Q 024054 222 TERLMLSANEVKTQIFYVPPHK----LLQFLEETSL 253 (273)
Q Consensus 222 ~~~L~~l~~~~~tlVl~~~~~~----l~~i~~~L~e 253 (273)
++.+.++++..+.+|..+.... -..+.+.|.+
T Consensus 543 ~~ll~~La~~h~~~vtlEe~~~~GG~Gs~v~efl~~ 578 (627)
T COG1154 543 EALLLELAKSHDLVVTLEENVVDGGFGSAVLEFLAA 578 (627)
T ss_pred HHHHHHHHhhcCeEEEEecCcccccHHHHHHHHHHh
Confidence 4568888888888888876553 3455555554
No 106
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=23.13 E-value=2.8e+02 Score=25.72 Aligned_cols=51 Identities=16% Similarity=0.088 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhCCCeEEEEccCCCCCCCchHHHHHHHhhh-CCC-CEEEEcc
Q 024054 139 ESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVD-EKI-PVVPIPG 190 (273)
Q Consensus 139 ~~~~~~~ii~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~-~gi-~vevIPG 190 (273)
.++..+.+....+.|-+.+.++ .|+|++.....++++.+.+ .|+ ++.+..-
T Consensus 45 ~eei~~~i~~~~~~gv~~V~lt-GGEPll~~~l~~li~~i~~~~gi~~v~itTN 97 (334)
T TIGR02666 45 FEEIERLVRAFVGLGVRKVRLT-GGEPLLRKDLVELVARLAALPGIEDIALTTN 97 (334)
T ss_pred HHHHHHHHHHHHHCCCCEEEEE-CccccccCCHHHHHHHHHhcCCCCeEEEEeC
Confidence 3444333333334565556674 8999999878888888776 467 6666543
No 107
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=22.91 E-value=7.1e+02 Score=24.19 Aligned_cols=39 Identities=23% Similarity=0.349 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHhCCCeEEEEccCCCCCCCchHHHHHHHhhh
Q 024054 139 ESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVD 180 (273)
Q Consensus 139 ~~~~~~~ii~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~ 180 (273)
.++..+.+.+.+++|..|+++. .|| +......+.+.+.+
T Consensus 420 ~~~a~~~a~~~a~~gD~vlv~G-~g~--~~~~~~~~~~~l~~ 458 (461)
T PRK00421 420 LEDLAELLAEVLKPGDLVLTMG-AGD--ITKLARALLELLLK 458 (461)
T ss_pred HHHHHHHHHHhcCCCCEEEEEC-CCC--HHHHHHHHHHHHhh
Confidence 3444555555556665555553 555 55555566665543
No 108
>PRK13059 putative lipid kinase; Reviewed
Probab=22.55 E-value=4.1e+02 Score=24.29 Aligned_cols=53 Identities=13% Similarity=0.173 Sum_probs=36.2
Q ss_pred HHHHhCCCeEEEEccCCCCCCCchHHHHHHHhhhC--CCCEEEEccchHHHHHHHhCCCCC
Q 024054 147 LNRLKQGEIVALISDAGTPGISDPGTELAKLCVDE--KIPVVPIPGASAFVAALSASGLAT 205 (273)
Q Consensus 147 i~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~--gi~vevIPGISS~~aAaA~lG~pl 205 (273)
.+.+.++.+++++ ..|| |+..+.++.+.+. ++++-++|.-| .+-.|-.+|+|.
T Consensus 50 ~~~~~~~~d~vi~-~GGD----GTv~evv~gl~~~~~~~~lgviP~GT-gNdfAr~lgi~~ 104 (295)
T PRK13059 50 FKDIDESYKYILI-AGGD----GTVDNVVNAMKKLNIDLPIGILPVGT-ANDFAKFLGMPT 104 (295)
T ss_pred HHHhhcCCCEEEE-ECCc----cHHHHHHHHHHhcCCCCcEEEECCCC-HhHHHHHhCCCC
Confidence 3444566667777 5999 5666777777633 57889999876 555566678764
No 109
>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A.
Probab=22.00 E-value=1.6e+02 Score=22.60 Aligned_cols=36 Identities=14% Similarity=0.171 Sum_probs=21.2
Q ss_pred EEEccCCCCCCC---chHHHHHHHhhhCC--CCEEEEccchH
Q 024054 157 ALISDAGTPGIS---DPGTELAKLCVDEK--IPVVPIPGASA 193 (273)
Q Consensus 157 v~LS~~GDP~iy---s~~~~l~~~l~~~g--i~vevIPGISS 193 (273)
+.+ ..|.|+++ ....++++.+.+.+ +.+.+....+-
T Consensus 51 v~~-~GGEPll~~~~~~l~~~i~~~~~~~~~~~i~i~TNg~~ 91 (119)
T PF13394_consen 51 VVF-TGGEPLLYLNPEDLIELIEYLKERGPEIKIRIETNGTL 91 (119)
T ss_dssp EEE-ESSSGGGSTTHHHHHHHHCTSTT-----EEEEEE-STT
T ss_pred EEE-ECCCCccccCHHHHHHHHHHHHhhCCCceEEEEeCCee
Confidence 455 38999987 33566777777776 66666665443
No 110
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=21.76 E-value=2.3e+02 Score=19.51 Aligned_cols=40 Identities=23% Similarity=0.282 Sum_probs=24.0
Q ss_pred HHHhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccch
Q 024054 148 NRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGAS 192 (273)
Q Consensus 148 ~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~vevIPGIS 192 (273)
.+.++|-+.+.++|-++ +++ ..++.+.+++.| +.++||+-
T Consensus 23 ~a~~~g~~~v~iTDh~~--~~~-~~~~~~~~~~~g--i~~i~G~E 62 (67)
T smart00481 23 RAKELGLKAIAITDHGN--LFG-AVEFYKAAKKAG--IKPIIGLE 62 (67)
T ss_pred HHHHcCCCEEEEeeCCc--ccC-HHHHHHHHHHcC--CeEEEEEE
Confidence 33457777777777763 222 234555555555 56799973
No 111
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=21.72 E-value=6e+02 Score=22.90 Aligned_cols=92 Identities=12% Similarity=0.099 Sum_probs=51.6
Q ss_pred HHHHHHHHHhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCccEEEEEEeCCCCcch
Q 024054 142 REQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARSR 221 (273)
Q Consensus 142 ~~~~ii~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~vevIPGISS~~aAaA~lG~pl~~~~~ig~lp~~~~~r 221 (273)
..+.+.+.+.+-++|.+. -.|. -+..+.++...+...|+.+.+++.........+ .+.-+|+.++ ++..+..+
T Consensus 129 ~l~~~~~~i~~A~~I~i~-G~G~--S~~~A~~l~~~l~~~g~~~~~~~d~~~~~~~~~--~~~~~Dl~I~--iS~sG~t~ 201 (292)
T PRK11337 129 EFHRAARFFYQARQRDLY-GAGG--SAAIARDVQHKFLRIGVRCQAYDDAHIMLMSAA--LLQEGDVVLV--VSHSGRTS 201 (292)
T ss_pred HHHHHHHHHHcCCeEEEE-EecH--HHHHHHHHHHHHhhCCCeEEEcCCHHHHHHHHh--cCCCCCEEEE--EeCCCCCH
Confidence 346666777776777766 2453 234456666777777888888887764433333 3444576554 34443322
Q ss_pred --HHHHHhhhCCCCeEEEEeC
Q 024054 222 --TERLMLSANEVKTQIFYVP 240 (273)
Q Consensus 222 --~~~L~~l~~~~~tlVl~~~ 240 (273)
.+.++.+.+.+-.+|.+..
T Consensus 202 ~~~~~~~~ak~~g~~ii~IT~ 222 (292)
T PRK11337 202 DVIEAVELAKKNGAKIICITN 222 (292)
T ss_pred HHHHHHHHHHHCCCeEEEEeC
Confidence 2333444445555555544
No 112
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=21.47 E-value=5.9e+02 Score=22.72 Aligned_cols=92 Identities=13% Similarity=0.105 Sum_probs=50.6
Q ss_pred HHHHHHHHHhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCccEEEEEEeCCCCcch
Q 024054 142 REQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARSR 221 (273)
Q Consensus 142 ~~~~ii~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~vevIPGISS~~aAaA~lG~pl~~~~~ig~lp~~~~~r 221 (273)
..+.+.+.+.+.++|.++- .| .-+....++...+..-|..+...........+++. ++-+|+.++ +|..+..+
T Consensus 117 ~l~~~~~~i~~a~~I~i~G-~G--~s~~~A~~~~~~l~~~g~~~~~~~d~~~~~~~~~~--~~~~Dv~I~--iS~sg~~~ 189 (278)
T PRK11557 117 KLHECVTMLRSARRIILTG-IG--ASGLVAQNFAWKLMKIGINAVAERDMHALLATVQA--LSPDDLLLA--ISYSGERR 189 (278)
T ss_pred HHHHHHHHHhcCCeEEEEe-cC--hhHHHHHHHHHHHhhCCCeEEEcCChHHHHHHHHh--CCCCCEEEE--EcCCCCCH
Confidence 3455667777778887772 44 22445566777777778888776555444444443 344576554 35444322
Q ss_pred --HHHHHhhhCCCCeEEEEeC
Q 024054 222 --TERLMLSANEVKTQIFYVP 240 (273)
Q Consensus 222 --~~~L~~l~~~~~tlVl~~~ 240 (273)
.+.++.+.+.+-.+|....
T Consensus 190 ~~~~~~~~ak~~ga~iI~IT~ 210 (278)
T PRK11557 190 ELNLAADEALRVGAKVLAITG 210 (278)
T ss_pred HHHHHHHHHHHcCCCEEEEcC
Confidence 1334444444444444443
No 113
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=21.46 E-value=2.9e+02 Score=27.03 Aligned_cols=49 Identities=18% Similarity=0.087 Sum_probs=34.6
Q ss_pred CHHHHHHHHHHHHh----CCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEE
Q 024054 138 NESQREQTVLNRLK----QGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVP 187 (273)
Q Consensus 138 ~~~~~~~~ii~~l~----~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~vev 187 (273)
+.++..+.+.+... +|..|.+. -.|+|+.+.-..++++.+++.|+.+.+
T Consensus 55 t~~evl~ev~~d~~~~~~~~ggVtis-GGGepl~~~~l~eLl~~lk~~gi~taI 107 (404)
T TIGR03278 55 PPQVVLGEVQTSLGFRTGRDTKVTIS-GGGDVSCYPELEELTKGLSDLGLPIHL 107 (404)
T ss_pred CHHHHHHHHHHHHHHhcCCCCEEEEE-CCcccccCHHHHHHHHHHHhCCCCEEE
Confidence 34555555554432 34455555 467999999999999999999988766
No 114
>PRK13337 putative lipid kinase; Reviewed
Probab=21.46 E-value=3.9e+02 Score=24.48 Aligned_cols=50 Identities=10% Similarity=0.040 Sum_probs=34.3
Q ss_pred HhCCCeEEEEccCCCCCCCchHHHHHHHhhhC--CCCEEEEccchHHHHHHHhCCCCC
Q 024054 150 LKQGEIVALISDAGTPGISDPGTELAKLCVDE--KIPVVPIPGASAFVAALSASGLAT 205 (273)
Q Consensus 150 l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~--gi~vevIPGISS~~aAaA~lG~pl 205 (273)
..++.+++++ ..|| |+..+.++.+... ..++-++|+-| .+..+-.+|+|.
T Consensus 54 ~~~~~d~vvv-~GGD----GTl~~vv~gl~~~~~~~~lgiiP~GT-~NdfAr~lgi~~ 105 (304)
T PRK13337 54 VERKFDLVIA-AGGD----GTLNEVVNGIAEKENRPKLGIIPVGT-TNDFARALHVPR 105 (304)
T ss_pred HhcCCCEEEE-EcCC----CHHHHHHHHHhhCCCCCcEEEECCcC-HhHHHHHcCCCC
Confidence 3456567777 5999 5556666665533 45789999987 666667778875
No 115
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=21.34 E-value=2.1e+02 Score=24.06 Aligned_cols=39 Identities=18% Similarity=0.279 Sum_probs=27.3
Q ss_pred HHHHHHhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCE
Q 024054 145 TVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPV 185 (273)
Q Consensus 145 ~ii~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~v 185 (273)
.|.+.+++.|++|++--+.+|.=. .+...+.+.+.|++|
T Consensus 8 ~i~~iL~~~K~IAvVG~S~~P~r~--sy~V~kyL~~~GY~V 46 (140)
T COG1832 8 DIAEILKSAKTIAVVGASDKPDRP--SYRVAKYLQQKGYRV 46 (140)
T ss_pred HHHHHHHhCceEEEEecCCCCCcc--HHHHHHHHHHCCCEE
Confidence 355566778899988555666443 467788888899654
No 116
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=21.12 E-value=1.9e+02 Score=25.60 Aligned_cols=52 Identities=12% Similarity=0.031 Sum_probs=33.2
Q ss_pred CHHHHHHHHHHH---Hh-CCCeEEEEccCCCCCCCchH-HHHHHHhhhCCCCEEEEccc
Q 024054 138 NESQREQTVLNR---LK-QGEIVALISDAGTPGISDPG-TELAKLCVDEKIPVVPIPGA 191 (273)
Q Consensus 138 ~~~~~~~~ii~~---l~-~G~~Vv~LS~~GDP~iys~~-~~l~~~l~~~gi~vevIPGI 191 (273)
+.++..+.+.+. .+ .|.- +-+| .|.|++...+ ..+.+.+++.|+.+-+.-.-
T Consensus 20 t~eel~~~~~~~~~f~~~sggG-Vt~S-GGEPllq~~fl~~l~~~~k~~gi~~~leTnG 76 (213)
T PRK10076 20 TLDALEREVMKDDIFFRTSGGG-VTLS-GGEVLMQAEFATRFLQRLRLWGVSCAIETAG 76 (213)
T ss_pred CHHHHHHHHHhhhHhhcCCCCE-EEEe-CchHHcCHHHHHHHHHHHHHcCCCEEEECCC
Confidence 345555554432 11 3333 4455 9999999764 68889999999887665443
No 117
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=20.96 E-value=3.8e+02 Score=20.36 Aligned_cols=92 Identities=11% Similarity=0.118 Sum_probs=52.0
Q ss_pred HHHHHHHHhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCccEEEEEEeCCCCcch-
Q 024054 143 EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARSR- 221 (273)
Q Consensus 143 ~~~ii~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~vevIPGISS~~aAaA~lG~pl~~~~~ig~lp~~~~~r- 221 (273)
.+++.+.+.+.++|.+. -.|. -+..+.++...+...|..++.+++......... ..+-++..++ ++..+...
T Consensus 3 i~~~~~~i~~~~~i~i~-g~g~--s~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~--iS~~g~~~~ 75 (139)
T cd05013 3 LEKAVDLLAKARRIYIF-GVGS--SGLVAEYLAYKLLRLGKPVVLLSDPHLQLMSAA--NLTPGDVVIA--ISFSGETKE 75 (139)
T ss_pred HHHHHHHHHhCCEEEEE-EcCc--hHHHHHHHHHHHHHcCCceEEecCHHHHHHHHH--cCCCCCEEEE--EeCCCCCHH
Confidence 34455666666777777 3563 445667777777778888999988755443333 2333455444 35444432
Q ss_pred -HHHHHhhhCCCCeEEEEeCc
Q 024054 222 -TERLMLSANEVKTQIFYVPP 241 (273)
Q Consensus 222 -~~~L~~l~~~~~tlVl~~~~ 241 (273)
.+.++.+.+.+..+++..+.
T Consensus 76 ~~~~~~~a~~~g~~iv~iT~~ 96 (139)
T cd05013 76 TVEAAEIAKERGAKVIAITDS 96 (139)
T ss_pred HHHHHHHHHHcCCeEEEEcCC
Confidence 22344444455555555443
No 118
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=20.89 E-value=3.2e+02 Score=25.65 Aligned_cols=77 Identities=18% Similarity=0.148 Sum_probs=0.0
Q ss_pred HhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCccEEEEEEeCCCCcchHHHHHhhh
Q 024054 150 LKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSA 229 (273)
Q Consensus 150 l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~vevIPGISS~~aAaA~lG~pl~~~~~ig~lp~~~~~r~~~L~~l~ 229 (273)
+++|+++++++ +| .......+..+.|+++|++++++ +...+ -|.+ .+.+.+.+
T Consensus 198 l~~G~di~iva-~G--~~~~~a~eAa~~L~~~Gi~v~vi------------------~~~~l--~Pld----~~~i~~~~ 250 (327)
T PRK09212 198 LREGSDVTIVT-FS--IQVKLALEAAELLEKEGISVEVI------------------DLRTL--RPLD----TETIIESV 250 (327)
T ss_pred EEeCCCEEEEE-cc--HHHHHHHHHHHHHHhcCCcEEEE------------------EEecC--CCCC----HHHHHHHH
Q ss_pred CCCCeEEEEeCccc----HHHHHHHHhh
Q 024054 230 NEVKTQIFYVPPHK----LLQFLEETSL 253 (273)
Q Consensus 230 ~~~~tlVl~~~~~~----l~~i~~~L~e 253 (273)
+..+.+++.+.... -.++.+.+.+
T Consensus 251 ~~~~~vv~vEe~~~~gGlg~~la~~l~~ 278 (327)
T PRK09212 251 KKTNRLVVVEEGWPFAGVGAEIAALIMK 278 (327)
T ss_pred HhCCeEEEEcCCCCCCCHHHHHHHHHHH
No 119
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=20.82 E-value=3.4e+02 Score=20.83 Aligned_cols=26 Identities=12% Similarity=0.100 Sum_probs=15.1
Q ss_pred CeEEEEecCCCCccchHHHHHHHHhhCC
Q 024054 81 PGLYLVATPIGNLEDITLRALRVLKSAN 108 (273)
Q Consensus 81 g~l~iVGvGPGdpdlLTlrA~~~L~~AD 108 (273)
|+||++|.|... .+-......+...+
T Consensus 1 ~~I~i~G~G~S~--~~a~~~~~~l~~~g 26 (128)
T cd05014 1 GKVVVTGVGKSG--HIARKIAATLSSTG 26 (128)
T ss_pred CeEEEEeCcHhH--HHHHHHHHHhhcCC
Confidence 579999999543 33344444455443
No 120
>PF00162 PGK: Phosphoglycerate kinase; InterPro: IPR001576 Phosphoglycerate kinase (2.7.2.3 from EC) (PGK) is an enzyme that catalyses the formation of ATP to ADP and vice versa. In the second step of the second phase in glycolysis, 1,3-diphosphoglycerate is converted to 3-phosphoglycerate, forming one molecule of ATP. If the reverse were to occur, one molecule of ADP would be formed. This reaction is essential in most cells for the generation of ATP in aerobes, for fermentation in anaerobes and for carbon fixation in plants. PGK is found in all living organisms and its sequence has been highly conserved throughout evolution. The enzyme exists as a monomer containing two nearly equal-sized domains that correspond to the N- and C-termini of the protein (the last 15 C-terminal residues loop back into the N-terminal domain). 3-phosphoglycerate (3-PG) binds to the N-terminal, while the nucleotide substrates, MgATP or MgADP, bind to the C-terminal domain of the enzyme. This extended two-domain structure is associated with large-scale 'hinge-bending' conformational changes, similar to those found in hexokinase []. At the core of each domain is a 6-stranded parallel beta-sheet surrounded by alpha helices. Domain 1 has a parallel beta-sheet of six strands with an order of 342156, while domain 2 has a parallel beta-sheet of six strands with an order of 321456. Analysis of the reversible unfolding of yeast phosphoglycerate kinase leads to the conclusion that the two lobes are capable of folding independently, consistent with the presence of intermediates on the folding pathway with a single domain folded []. Phosphoglycerate kinase (PGK) deficiency is associated with haemolytic anaemia and mental disorders in man []. This group represents a phosphoglycerate kinase.; GO: 0004618 phosphoglycerate kinase activity, 0006096 glycolysis; PDB: 1PHP_A 1V6S_A 2IE8_A 1ZMR_A 16PK_A 13PK_B 2P9Q_A 2P9T_A 2PAA_B 3OZA_A ....
Probab=20.31 E-value=5.2e+02 Score=25.18 Aligned_cols=96 Identities=21% Similarity=0.183 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhCCCeEEEEccCCCCC---CCch--HHHHHHHhhh-CCCCEEEEccchHHHHHHHhCCCCCccEEEE---
Q 024054 141 QREQTVLNRLKQGEIVALISDAGTPG---ISDP--GTELAKLCVD-EKIPVVPIPGASAFVAALSASGLATDEFTFV--- 211 (273)
Q Consensus 141 ~~~~~ii~~l~~G~~Vv~LS~~GDP~---iys~--~~~l~~~l~~-~gi~vevIPGISS~~aAaA~lG~pl~~~~~i--- 211 (273)
+.+..|...+++|-+|+++|..|.|- .-+. ....+++|.+ .|.+|..+|.+..-.+-.+...+...++.++
T Consensus 35 ~~lpTI~~l~~~gakvVl~sH~GRPk~~~~~~~~SL~~va~~L~~~L~~~V~f~~d~~g~~~~~~i~~l~~G~IllLENl 114 (384)
T PF00162_consen 35 AALPTIKYLLEKGAKVVLMSHLGRPKGKGYDDFFSLEPVAERLSKLLGKPVKFVDDCIGEEAEEAIESLKPGEILLLENL 114 (384)
T ss_dssp HHHHHHHHHHHTTEEEEEE---SSTTTSSSTGGG-SHHHHHHHHHHHTSEEEEESTSSSHHHHHHHHTSSTTEEEEESSG
T ss_pred HHHHHHHHHHhcCCeEEEEeccCCcccCCCCcccChHHHHHHHHHHhCCCeeeccccCCHHHHHHHhccCCCCEEEEeee
Confidence 44566766778888999999999993 2221 1223333333 2677999998643233333334444455444
Q ss_pred EEeCCCC----cchHHHHHhhhCCCCeEE
Q 024054 212 GFLPKHA----RSRTERLMLSANEVKTQI 236 (273)
Q Consensus 212 g~lp~~~----~~r~~~L~~l~~~~~tlV 236 (273)
.|.+... ..+....+.++...+..|
T Consensus 115 Rf~~eE~~~~~~~~~~f~~~LA~l~DvyV 143 (384)
T PF00162_consen 115 RFYPEEEGKKEKNDTEFARKLASLADVYV 143 (384)
T ss_dssp GGSTTTTSEEHHTHHHHHHHHHTT-SEEE
T ss_pred ccccccccccccccHHHHHHHHHhCCEEE
Confidence 2233332 222334456666666555
No 121
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=20.19 E-value=2.6e+02 Score=25.11 Aligned_cols=61 Identities=20% Similarity=0.150 Sum_probs=34.3
Q ss_pred HHHHHHHHHH-h--CCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCE----EEEccchHHHHHHHhCC
Q 024054 141 QREQTVLNRL-K--QGEIVALISDAGTPGISDPGTELAKLCVDEKIPV----VPIPGASAFVAALSASG 202 (273)
Q Consensus 141 ~~~~~ii~~l-~--~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~v----evIPGISS~~aAaA~lG 202 (273)
.....+.+.+ + ..++|+++ ...++.-.+....+.+.+.+.|+++ .+-+|.+++......+.
T Consensus 120 ~~~~~~~~~~~~~~g~~~v~iv-~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~~~~l~ 187 (343)
T PF13458_consen 120 QQAAALAEYLAKKLGAKKVAIV-YPDDPYGRSLAEAFRKALEAAGGKVVGEIRYPPGDTDFSALVQQLK 187 (343)
T ss_dssp HHHHHHHHHHHHTTTTSEEEEE-EESSHHHHHHHHHHHHHHHHTTCEEEEEEEE-TTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcEEEEE-ecCchhhhHHHHHHHHHHhhcCceeccceecccccccchHHHHHHh
Confidence 3445555543 2 24789998 4555544444455666667777664 23456666665555543
No 122
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=20.19 E-value=3.6e+02 Score=19.80 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=24.9
Q ss_pred HHHHhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEcc
Q 024054 147 LNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPG 190 (273)
Q Consensus 147 i~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~vevIPG 190 (273)
...+..++.|++.|..|. +.....+.|.+.|+++..+.|
T Consensus 55 ~~~~~~~~~ivv~C~~G~-----rs~~aa~~L~~~G~~~~~l~G 93 (100)
T cd01523 55 LDQLPDDQEVTVICAKEG-----SSQFVAELLAERGYDVDYLAG 93 (100)
T ss_pred HhhCCCCCeEEEEcCCCC-----cHHHHHHHHHHcCceeEEeCC
Confidence 344556778888875552 445666777778887655554
No 123
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=20.15 E-value=4.2e+02 Score=25.34 Aligned_cols=91 Identities=16% Similarity=0.224 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHhCCCeEEEEccCCCCCCCchHHHHHHHhhhC-CCCE--EEEccchHHHHHHHhCCCCCccEEEEEEeCC
Q 024054 140 SQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDE-KIPV--VPIPGASAFVAALSASGLATDEFTFVGFLPK 216 (273)
Q Consensus 140 ~~~~~~ii~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~-gi~v--evIPGISS~~aAaA~lG~pl~~~~~ig~lp~ 216 (273)
.+...++..-+.+|-+++.+ +.|-|.+ .+++.+++. ++++ --|.|--|+.-++|..|+= -.
T Consensus 228 ~eAlre~~~D~~EGAD~lMV-KPal~YL-----DIi~~~k~~~~~PvaaYqVSGEYaMikaAa~~G~~----------D~ 291 (323)
T PRK09283 228 REALREVALDIEEGADMVMV-KPALPYL-----DIIRRVKDEFNLPVAAYQVSGEYAMIKAAAQNGWI----------DE 291 (323)
T ss_pred HHHHHHHHhhHHhCCCEEEE-cCCchHH-----HHHHHHHhcCCCCEEEEEccHHHHHHHHHHHcCCC----------CH
Confidence 44455555566889999999 8776643 355555543 4555 5578999999999999972 10
Q ss_pred CCcchHHHHHhhhCCCCeEEEEeCcccHHHHHHH
Q 024054 217 HARSRTERLMLSANEVKTQIFYVPPHKLLQFLEE 250 (273)
Q Consensus 217 ~~~~r~~~L~~l~~~~~tlVl~~~~~~l~~i~~~ 250 (273)
. .--.+.+..+.+++..++|. +-.+++.+.
T Consensus 292 ~-~~~~Esl~~~kRAGAd~IiT---YfA~~~a~~ 321 (323)
T PRK09283 292 E-RVVLESLLSIKRAGADGILT---YFAKDAARW 321 (323)
T ss_pred H-HHHHHHHHHHHhcCCCEEEe---cCHHHHHHh
Confidence 0 00135566777777777774 344444443
No 124
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=20.07 E-value=3.8e+02 Score=20.69 Aligned_cols=50 Identities=24% Similarity=0.379 Sum_probs=27.2
Q ss_pred HHHHHHHhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHH
Q 024054 144 QTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAA 197 (273)
Q Consensus 144 ~~ii~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~vevIPGISS~~aA 197 (273)
+..++...+++.|.+++|.+-- ++.....+.+.+. -.++++-|++--...
T Consensus 48 ~~~i~~~~~~~~vlil~Dl~gg---sp~n~a~~~~~~~-~~~~vi~G~Nlpmll 97 (116)
T PF03610_consen 48 EEAIEELDEGDGVLILTDLGGG---SPFNEAARLLLDK-PNIRVISGVNLPMLL 97 (116)
T ss_dssp HHHHHHCCTTSEEEEEESSTTS---HHHHHHHHHHCTS-TTEEEEES--HHHHH
T ss_pred HHHHHhccCCCcEEEEeeCCCC---ccchHHHHHhccC-CCEEEEecccHHHHH
Confidence 3334444567888888774321 3344444554433 348899999754443
Done!