Query 024054
Match_columns 273
No_of_seqs 190 out of 1660
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 17:24:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024054.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024054hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kwp_A Predicted methyltransfe 100.0 4.3E-41 1.5E-45 310.0 20.1 191 79-269 14-204 (296)
2 1wyz_A Putative S-adenosylmeth 100.0 7.5E-40 2.6E-44 292.9 17.3 192 79-270 1-204 (242)
3 4e16_A Precorrin-4 C(11)-methy 100.0 1.4E-37 4.9E-42 279.8 21.0 188 79-270 3-200 (253)
4 3ndc_A Precorrin-4 C(11)-methy 100.0 5.9E-37 2E-41 277.8 20.1 186 81-270 4-199 (264)
5 1cbf_A Cobalt-precorrin-4 tran 100.0 1.1E-35 3.7E-40 271.7 22.2 187 80-270 20-216 (285)
6 1s4d_A Uroporphyrin-III C-meth 100.0 1.5E-35 5.3E-40 270.3 20.7 188 78-270 12-216 (280)
7 2ybo_A Methyltransferase; SUMT 100.0 3.9E-35 1.3E-39 269.6 21.0 186 80-270 24-225 (294)
8 1ve2_A Uroporphyrin-III C-meth 100.0 3.8E-35 1.3E-39 260.5 18.9 179 79-270 1-191 (235)
9 3nut_A Precorrin-3 methylase; 100.0 1.2E-34 4.1E-39 260.3 18.8 189 76-270 4-206 (251)
10 1va0_A Uroporphyrin-III C-meth 100.0 1E-33 3.4E-38 251.9 17.5 178 81-270 1-191 (239)
11 2qbu_A Precorrin-2 methyltrans 100.0 1.4E-33 4.8E-38 249.0 18.1 183 79-270 1-206 (232)
12 1pjq_A CYSG, siroheme synthase 100.0 1.7E-33 5.9E-38 272.7 20.3 187 79-270 214-414 (457)
13 2e0n_A Precorrin-2 C20-methylt 100.0 7.2E-33 2.4E-37 249.3 17.4 183 79-270 3-208 (259)
14 2zvb_A Precorrin-3 C17-methylt 100.0 2E-32 6.9E-37 252.0 16.8 184 81-270 2-218 (295)
15 3nd1_A Precorrin-6A synthase/C 100.0 8.8E-33 3E-37 252.2 9.5 184 76-270 17-232 (275)
16 1vhv_A Diphthine synthase; str 100.0 2.3E-31 8E-36 241.0 15.0 190 76-270 8-210 (268)
17 2z6r_A Diphthine synthase; met 100.0 3.4E-31 1.2E-35 239.0 15.3 185 82-270 2-212 (265)
18 3i4t_A Diphthine synthase; nia 100.0 7E-32 2.4E-36 248.2 10.1 187 80-270 20-245 (292)
19 2npn_A Putative cobalamin synt 100.0 1.2E-30 4.1E-35 233.9 13.2 177 80-270 2-211 (251)
20 1wde_A Probable diphthine synt 100.0 1.2E-29 4.2E-34 232.8 15.9 186 81-270 8-223 (294)
21 2bb3_A Cobalamin biosynthesis 99.9 1.2E-27 4E-32 211.3 12.5 171 79-270 20-190 (221)
22 3hh1_A Tetrapyrrole methylase 99.9 1.2E-27 4.2E-32 191.6 11.5 115 77-191 2-117 (117)
23 3ffy_A Putative tetrapyrrole ( 99.6 1.3E-14 4.4E-19 115.8 9.4 80 189-269 1-80 (115)
24 3mvn_A UDP-N-acetylmuramate:L- 68.1 30 0.001 27.6 8.9 91 81-179 64-162 (163)
25 3gdw_A Sigma-54 interaction do 65.3 9.7 0.00033 30.3 5.2 55 138-197 43-102 (139)
26 3gx1_A LIN1832 protein; APC633 63.7 5.2 0.00018 31.5 3.3 55 138-197 43-100 (130)
27 2o8r_A Polyphosphate kinase; s 63.5 13 0.00045 37.5 6.9 90 100-191 336-433 (705)
28 2fpr_A Histidine biosynthesis 62.6 27 0.00093 27.8 7.6 93 151-251 56-173 (176)
29 1byr_A Protein (endonuclease); 51.2 37 0.0013 26.0 6.4 50 139-189 39-88 (155)
30 3sho_A Transcriptional regulat 46.8 1E+02 0.0036 24.2 10.6 92 142-240 28-122 (187)
31 2d59_A Hypothetical protein PH 44.3 1.1E+02 0.0037 23.7 9.7 96 81-184 23-126 (144)
32 3ipr_A PTS system, IIA compone 43.5 42 0.0015 26.7 5.7 50 144-197 49-103 (150)
33 2pju_A Propionate catabolism o 43.4 78 0.0027 27.0 7.7 105 91-204 46-174 (225)
34 2q5c_A NTRC family transcripti 43.1 1.4E+02 0.0047 24.6 9.5 106 92-204 37-162 (196)
35 2yci_X 5-methyltetrahydrofolat 41.6 1.4E+02 0.0048 26.1 9.3 109 82-193 49-174 (271)
36 1pdo_A Mannose permease; phosp 41.2 40 0.0014 26.1 5.1 55 138-196 40-97 (135)
37 3tr9_A Dihydropteroate synthas 39.2 1.6E+02 0.0053 26.6 9.3 91 99-192 95-203 (314)
38 2duw_A Putative COA-binding pr 33.6 1.5E+02 0.0051 22.9 7.4 26 81-107 14-39 (145)
39 3lfh_A Manxa, phosphotransfera 33.6 45 0.0016 26.4 4.3 53 143-200 50-103 (144)
40 3mtq_A Putative phosphoenolpyr 32.1 81 0.0028 25.5 5.7 55 141-200 65-119 (159)
41 2wm8_A MDP-1, magnesium-depend 32.1 1.8E+02 0.0062 22.7 11.3 90 151-253 82-178 (187)
42 3kwm_A Ribose-5-phosphate isom 32.0 1E+02 0.0035 26.5 6.5 57 143-206 17-74 (224)
43 1tq1_A AT5G66040, senescence-a 31.6 40 0.0014 25.5 3.6 101 94-205 18-127 (129)
44 2dc1_A L-aspartate dehydrogena 31.2 1.6E+02 0.0056 24.3 7.8 53 140-193 61-113 (236)
45 3bed_A PTS system, IIA compone 30.9 1.2E+02 0.004 23.6 6.4 52 144-200 53-104 (142)
46 3l7o_A Ribose-5-phosphate isom 30.6 58 0.002 28.0 4.8 58 142-206 8-69 (225)
47 2i6x_A Hydrolase, haloacid deh 30.4 1.9E+02 0.0064 22.4 9.1 57 189-252 151-207 (211)
48 1vee_A Proline-rich protein fa 29.6 1.8E+02 0.0061 21.8 7.2 90 95-190 6-107 (134)
49 3lqk_A Dipicolinate synthase s 25.7 58 0.002 27.4 3.8 38 152-190 6-43 (201)
50 1iuk_A Hypothetical protein TT 25.5 2.3E+02 0.0078 21.7 7.6 97 81-185 14-120 (140)
51 3op6_A Uncharacterized protein 25.0 1.6E+02 0.0056 22.8 6.3 35 172-206 5-41 (152)
52 3fst_A 5,10-methylenetetrahydr 24.1 96 0.0033 27.7 5.2 62 140-206 163-232 (304)
53 3kkj_A Amine oxidase, flavin-c 24.1 61 0.0021 25.2 3.5 33 79-114 1-33 (336)
54 1gmx_A GLPE protein; transfera 23.5 2E+02 0.0069 20.4 7.8 84 95-190 6-91 (108)
55 3hhe_A Ribose-5-phosphate isom 23.2 1.6E+02 0.0056 25.7 6.3 57 143-206 32-91 (255)
56 3apt_A Methylenetetrahydrofola 22.8 80 0.0027 28.2 4.4 63 139-206 159-229 (310)
57 1x92_A APC5045, phosphoheptose 22.3 2.9E+02 0.01 21.8 9.3 95 141-240 33-148 (199)
58 3mcu_A Dipicolinate synthase, 22.1 67 0.0023 27.2 3.5 42 152-194 4-45 (207)
59 3eme_A Rhodanese-like domain p 21.9 97 0.0033 22.1 4.0 36 150-190 53-88 (103)
60 2r47_A Uncharacterized protein 21.7 1.3E+02 0.0044 24.5 5.0 46 143-192 16-61 (157)
61 2pjm_A Ribose-5-phosphate isom 21.1 1.1E+02 0.0039 26.1 4.8 57 143-206 11-71 (226)
62 2yva_A DNAA initiator-associat 20.9 3.1E+02 0.011 21.5 8.4 47 141-190 29-81 (196)
63 1xdp_A Polyphosphate kinase; P 20.5 1E+02 0.0035 30.8 5.0 85 100-185 331-424 (687)
64 3iix_A Biotin synthetase, puta 20.2 1.6E+02 0.0054 25.8 5.8 66 138-204 85-154 (348)
65 1aj0_A DHPS, dihydropteroate s 20.0 4.3E+02 0.015 23.1 8.6 92 98-192 79-189 (282)
No 1
>3kwp_A Predicted methyltransferase; putative methyltransferase, MCSG, STRU genomics, PSI-2, protein structure initiative; 2.29A {Lactobacillus brevis atcc 367}
Probab=100.00 E-value=4.3e-41 Score=310.01 Aligned_cols=191 Identities=43% Similarity=0.693 Sum_probs=177.9
Q ss_pred CCCeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhccCCCcEEecCCCCHHHHHHHHHHHHhCCCeEEE
Q 024054 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVAL 158 (273)
Q Consensus 79 ~~g~l~iVGvGPGdpdlLTlrA~~~L~~ADvV~~~~~~~~~~ll~~~~~~~~~i~~~~~~~~~~~~~ii~~l~~G~~Vv~ 158 (273)
|+|+||+||+||||+++||+||+++|++||+|++++++++.++++.++++++++.++++++++..+.+++.+++|++|++
T Consensus 14 ~~G~LylVG~GpG~~~~lT~rA~~~L~~aDvI~~edtr~~~~lL~~~~~~~~~i~~~~~~~~~~~~~li~~l~~G~~Va~ 93 (296)
T 3kwp_A 14 TGGHLYLVPTPIGNLDDMTFRAVKTLTAVDLIAAEDTRNTQKLLNHFEITTKQISFHEHNTQERIPQLIAKLKQGMQIAQ 93 (296)
T ss_dssp CCCEEEECCBCSSCGGGCCHHHHHHHHHSSEEEESCHHHHHHHHHHTTCCCEEEECSTTTHHHHHHHHHHHHHTTCEEEE
T ss_pred cCceEEEeccCCCCccchhhHHHHHHhHhhhhhhhccccHHHHhhheeeeeeeeehhhcchhhHhHHHHHHHhcCceEEE
Confidence 67999999999999999999999999999999998877778899999888888888888888889999999999999999
Q ss_pred EccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCccEEEEEEeCCCCcchHHHHHhhhCCCCeEEEE
Q 024054 159 ISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFY 238 (273)
Q Consensus 159 LS~~GDP~iys~~~~l~~~l~~~gi~vevIPGISS~~aAaA~lG~pl~~~~~ig~lp~~~~~r~~~L~~l~~~~~tlVl~ 238 (273)
+||+|||++||++.++++.+.+.|++|+++|||||+++|+|++|+||++|.|+|++|....+|.+.|+.+++.+.|+|||
T Consensus 94 lsdaGdP~i~~~g~~lv~~~~~~gi~v~viPGiSA~~aA~a~~Glp~~~f~f~g~~p~~~~~r~~~l~~l~~~~~tlV~y 173 (296)
T 3kwp_A 94 VSDAGMPSISDPGHELVNACIDAHIPVVPLPGANAGLTALIASGLAPQPFYFYGFLDRKPKDRKAEIAGLAQRPETLIFY 173 (296)
T ss_dssp ECSSBCTTSSHHHHHHHHHHHHTTCCEEECCCCCHHHHHHHHHSSCCSSEEEEEECCSSHHHHHHHHHTTTTCCSEEEEE
T ss_pred eccCCCCCCCCCchHHHHHHHHcCCCeeeCCCcccchHHHHhccCCCCceeEEeeccCCcHHHHHHHHHhhcCCceeEee
Confidence 98899999999999999999999999999999999999999999999999999998765444567899999999999999
Q ss_pred eCcccHHHHHHHHhhhcCCCcEEEeEehhhh
Q 024054 239 VPPHKLLQFLEETSLLFGYSRYIRYLKILFL 269 (273)
Q Consensus 239 ~~~~~l~~i~~~L~e~~~~d~~v~v~~~l~~ 269 (273)
++++++.++++.|.+.+++++++++|++++.
T Consensus 174 ~~~~rl~~~l~~L~~~~g~~~~v~v~~~lt~ 204 (296)
T 3kwp_A 174 EAPHRLKKTLQNLAAGFGDERPAVLCRELTK 204 (296)
T ss_dssp ECGGGHHHHHHHHHHHHCTTCEEEEEESTTS
T ss_pred eCcHHHHHHHHHHHHHhCCcchhHHHHHHHH
Confidence 9999999999999988888899999999985
No 2
>1wyz_A Putative S-adenosylmethionine-dependent methyltra; northeast structural genomics consortium, BTR28, methyltrans PSI; 2.50A {Bacteroides thetaiotaomicron} SCOP: c.90.1.1
Probab=100.00 E-value=7.5e-40 Score=292.93 Aligned_cols=192 Identities=21% Similarity=0.402 Sum_probs=161.8
Q ss_pred CCCeEEEEecCCCCcc---chHHHHHHHHhhCCEEEEcCCCCCHHHHhhccCCCc-----EEecCCCCHHHHHHHHHHHH
Q 024054 79 LEPGLYLVATPIGNLE---DITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTP-----LLSYHKFNESQREQTVLNRL 150 (273)
Q Consensus 79 ~~g~l~iVGvGPGdpd---lLTlrA~~~L~~ADvV~~~~~~~~~~ll~~~~~~~~-----~i~~~~~~~~~~~~~ii~~l 150 (273)
|+|+||+||+|||||+ +||+||+++|++||+|++++++.++++++.+..+++ .+..++.++++..+.+++.+
T Consensus 1 M~G~ly~VG~GpGd~~~~dLlTlrA~~~L~~aDvI~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (242)
T 1wyz_A 1 METALYLLPVTLGDTPLEQVLPSYNTEIIRGIRHFIVEDVRSARRFLKKVDREIDIDSLTFYPLNKHTSPEDISGYLKPL 80 (242)
T ss_dssp -CCSEEEECCCSSSSCHHHHSCTHHHHHHTTCCEEEESCHHHHHHHHHHHCSSSCTTCCCCEECCSSCCHHHHHHHHHHH
T ss_pred CCceEEEEecCCCCCcccCccCHHHHHHHHhCCEEEEeCCcchHHHHHhcCCCCceeeeeeecccccCHHHHHHHHHHHH
Confidence 5689999999999998 799999999999999999887777788887765544 44555566677788999999
Q ss_pred hCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCccEEEEEEeCCCCcchHHHHHhhhC
Q 024054 151 KQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSAN 230 (273)
Q Consensus 151 ~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~vevIPGISS~~aAaA~lG~pl~~~~~ig~lp~~~~~r~~~L~~l~~ 230 (273)
++|++|+++|++|||++||++.++++.+.+.|+++++||||||+++|+|++|+|+++|.|+|++|....++.+.|+.+++
T Consensus 81 ~~G~~Va~ls~~GdP~i~~~g~~l~~~l~~~gi~vevIPGiSs~~aa~a~~G~p~~~f~~~g~~p~~~~~~~~~l~~l~~ 160 (242)
T 1wyz_A 81 AGGASMGVISEAGCPAVADPGADVVAIAQRQKLKVIPLVGPSSIILSVMASGFNGQSFAFHGYLPIEPGERAKKLKTLEQ 160 (242)
T ss_dssp HTTCCEEEECC-------CHHHHHHHHHHHTTCCEEECCCCCHHHHHHHHHTSCSSSEEEEEECCSSTTHHHHHHHHHHH
T ss_pred HcCCEEEEEecCCCCcccCcHHHHHHHHHHCCCCEEEeCcHHHHHHHHHHcCCCCCeEEEEEEcCCCccchHHHHHHHhc
Confidence 99999999987999999999999999999999999999999999999999999999999999887654334467777777
Q ss_pred C----CCeEEEEeCcccHHHHHHHHhhhcCCCcEEEeEehhhhh
Q 024054 231 E----VKTQIFYVPPHKLLQFLEETSLLFGYSRYIRYLKILFLF 270 (273)
Q Consensus 231 ~----~~tlVl~~~~~~l~~i~~~L~e~~~~d~~v~v~~~l~~~ 270 (273)
. ..|+|||++++++.++++.|.+.+++++++++++|++.-
T Consensus 161 ~~~~~~~t~vl~~~~~~~~~~~~~l~~~~~~~~~v~vv~~~t~~ 204 (242)
T 1wyz_A 161 RVYAESQTQLFIETPYRNHKMIEDILQNCRPQTKLCIAANITCE 204 (242)
T ss_dssp HHHHHTCEEEEEECGGGHHHHHHHHHHHSCSSSEEEEEESTTSS
T ss_pred ccccCCCeEEEEEcHHHHHHHHHHHHhcCCCCCEEEEEEeCCCC
Confidence 6 899999999999999999999888889999999999854
No 3
>4e16_A Precorrin-4 C(11)-methyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.49A {Clostridium difficile}
Probab=100.00 E-value=1.4e-37 Score=279.80 Aligned_cols=188 Identities=15% Similarity=0.170 Sum_probs=164.5
Q ss_pred CCCeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhccCCCcEEecCCCCHHHHHHHHHHHHhCCCeEEE
Q 024054 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVAL 158 (273)
Q Consensus 79 ~~g~l~iVGvGPGdpdlLTlrA~~~L~~ADvV~~~~~~~~~~ll~~~~~~~~~i~~~~~~~~~~~~~ii~~l~~G~~Vv~ 158 (273)
++|+||+||+|||||++||+||+++|++||+|++++++.++.+++.+..+++++..+.+++++..+.+++.+++|++|++
T Consensus 3 ~~g~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~V~~ 82 (253)
T 4e16_A 3 AMNKVHFVGAGPGDKELITLKGYKLLSNADVVIYAGSLVNPELLEYCKEDCQIHNSAHMDLQEIIDVMREGIENNKSVVR 82 (253)
T ss_dssp -CCCEEEEECBSSCGGGSCHHHHHHHHHCSEEEECTTTSCGGGGGGSCTTCEEEEGGGCCHHHHHHHHHHHHHTTCCEEE
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHHHHhCCEEEEeCCCCCHHHHhhcCCCCEEEecCCCCHHHHHHHHHHHHHCCCcEEE
Confidence 56999999999999999999999999999999998888877888888777777665556788888999999999999999
Q ss_pred EccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCC------ccEEEEEEeCCCCcc---hHHHHHhhh
Q 024054 159 ISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLAT------DEFTFVGFLPKHARS---RTERLMLSA 229 (273)
Q Consensus 159 LS~~GDP~iys~~~~l~~~l~~~gi~vevIPGISS~~aAaA~lG~pl------~~~~~ig~lp~~~~~---r~~~L~~l~ 229 (273)
++ +|||++||++.++++.+.+.|+++++||||||+++|+|++|+|| +++.++ +.|++. +.+.++.++
T Consensus 83 l~-~GDP~i~~~~~~l~~~l~~~gi~veviPGiSS~~aa~a~~G~plt~~~~~~~~~~~---~~~g~~~~~~~~~~~~l~ 158 (253)
T 4e16_A 83 LQ-TGDFSIYGSIREQVEDLNKLNIDYDCTPGVSSFLGAASSLGVEYTVPEISQSVIIT---RMEGRTPVPEKESIQSYA 158 (253)
T ss_dssp EE-SBCTTTTCCHHHHHHHHHHHTCCEEEECCCCHHHHHHHHHTCCSCBTTTBSCEEEE---EC---CCCCGGGSHHHHH
T ss_pred Ee-CCCCccccCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHhCCCcccCCccceEEEE---eccCCCCcchHHHHHHHh
Confidence 95 99999999999999999999999999999999999999999999 567666 334321 234678888
Q ss_pred CCCCeEEEEeCcccHHHHHHHHhh-hcCCCcEEEeEehhhhh
Q 024054 230 NEVKTQIFYVPPHKLLQFLEETSL-LFGYSRYIRYLKILFLF 270 (273)
Q Consensus 230 ~~~~tlVl~~~~~~l~~i~~~L~e-~~~~d~~v~v~~~l~~~ 270 (273)
+.+.|+|||++++++.++++.|.+ ++++++++++++|++.-
T Consensus 159 ~~~~t~vl~~~~~~~~~i~~~L~~~g~~~~~~v~v~~~l~~~ 200 (253)
T 4e16_A 159 KHQTSMVIFLSVQEIEKVVSKLLEGGYPKDTPIAVIYKATWA 200 (253)
T ss_dssp TTCSEEEEEECSTTHHHHHHHHHHTTCCTTCEEEEEESTTST
T ss_pred cCCCeEEEECcHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCC
Confidence 889999999999999999999999 88889999999999864
No 4
>3ndc_A Precorrin-4 C(11)-methyltransferase; SAH; HET: SAH; 2.00A {Rhodobacter capsulatus} PDB: 3nei_A
Probab=100.00 E-value=5.9e-37 Score=277.80 Aligned_cols=186 Identities=17% Similarity=0.119 Sum_probs=165.4
Q ss_pred CeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhccCCCcEEecCCCCHHHHHHHHHHHHhCCCeEEEEc
Q 024054 81 PGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALIS 160 (273)
Q Consensus 81 g~l~iVGvGPGdpdlLTlrA~~~L~~ADvV~~~~~~~~~~ll~~~~~~~~~i~~~~~~~~~~~~~ii~~l~~G~~Vv~LS 160 (273)
++||+||+|||||++||+||+++|++||+|+++++++++.+++.+.++++++....++++++.+.+++.+++|++|++++
T Consensus 4 m~l~iVG~GpG~~~lLT~~A~~~L~~AdvV~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~G~~Va~L~ 83 (264)
T 3ndc_A 4 MTVHFIGAGPGAADLITIRGRDLIASCPVCLYAGSLVPEALLAHCPPGAKIVNTAPMSLDAIIDTIAEAHAAGQDVARLH 83 (264)
T ss_dssp CCEEEEECBSSCGGGSBHHHHHHHHHCSEEEECSTTSCGGGGGGSCTTCEEEECTTSCHHHHHHHHHHHHHHTCCEEEEE
T ss_pred cEEEEEEcCCCChHHHHHHHHHHHHcCCEEEEECCCCCHHHHhhcCCCCEEEecCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 57999999999999999999999999999999888888888888887888887776788889999999999999999995
Q ss_pred cCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCC------ccEEEEEEeCCCCcc----hHHHHHhhhC
Q 024054 161 DAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLAT------DEFTFVGFLPKHARS----RTERLMLSAN 230 (273)
Q Consensus 161 ~~GDP~iys~~~~l~~~l~~~gi~vevIPGISS~~aAaA~lG~pl------~~~~~ig~lp~~~~~----r~~~L~~l~~ 230 (273)
+|||++||++.++++.+.+.|+++++||||||+++|+|++|+|| +++.++ +.|++. ..+.|+.+++
T Consensus 84 -~GDP~iyg~~~~l~~~l~~~gi~veviPGiSs~~aaaA~lG~plt~~~~~~~~~~~---s~~~~~~~~~~~~~l~~l~~ 159 (264)
T 3ndc_A 84 -SGDLSIWSAMGEQLRRLRALNIPYDVTPGVPSFAAAAATLGAELTLPGVAQSVILT---RTSGRASAMPAGETLENFAR 159 (264)
T ss_dssp -SBCTTSSCSHHHHHHHHHHTTCCEEEECCCCHHHHHHHHHTCCSCBTTTBCCEEEE---ECCTTTCCCCTTCCHHHHHT
T ss_pred -CCCCccccHHHHHHHHHHhCCCCEEEeCCHHHHHHHHHHhCCCccCCCceeEEEEE---eccCCCCCcchHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999 456555 445431 1246888888
Q ss_pred CCCeEEEEeCcccHHHHHHHHhhhcCCCcEEEeEehhhhh
Q 024054 231 EVKTQIFYVPPHKLLQFLEETSLLFGYSRYIRYLKILFLF 270 (273)
Q Consensus 231 ~~~tlVl~~~~~~l~~i~~~L~e~~~~d~~v~v~~~l~~~ 270 (273)
.+.|+|||++.+++.++++.|.+.++++++++++++++.-
T Consensus 160 ~~~tlvl~~~~~~~~~i~~~L~~~~~~~~~v~v~~~l~~~ 199 (264)
T 3ndc_A 160 TGAVLAIHLSVHVLDEVVQKLVPHYGEDCPVAIVWRASWP 199 (264)
T ss_dssp TTCEEEEESCGGGHHHHHHHHHHHHCTTCEEEEEESTTST
T ss_pred CCCcEEEecCHHHHHHHHHHHHhhCCCCCEEEEEEECCCC
Confidence 8899999999999999999999877889999999999853
No 5
>1cbf_A Cobalt-precorrin-4 transmethylase; precorrin-4 methyltransferase, cobalamin biosynth methyltransferase; HET: SAH; 2.40A {Bacillus megaterium} SCOP: c.90.1.1 PDB: 2cbf_A*
Probab=100.00 E-value=1.1e-35 Score=271.67 Aligned_cols=187 Identities=19% Similarity=0.238 Sum_probs=164.7
Q ss_pred CCeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhccCCCcEEecCCCCHHHHHHHHHHHHhCCCeEEEE
Q 024054 80 EPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALI 159 (273)
Q Consensus 80 ~g~l~iVGvGPGdpdlLTlrA~~~L~~ADvV~~~~~~~~~~ll~~~~~~~~~i~~~~~~~~~~~~~ii~~l~~G~~Vv~L 159 (273)
+++||+||+|||||++||+||+++|++||+|++++++.++.+++.+..+++++....+++++..+.+++.+++|++|+++
T Consensus 20 ~~~l~lVG~GpGd~~~LT~~A~~~L~~AdvV~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~Vv~L 99 (285)
T 1cbf_A 20 HMKLYIIGAGPGDPDLITVKGLKLLQQADVVLYADSLVSQDLIAKSKPGAEVLKTAGMHLEEMVGTMLDRMREGKMVVRV 99 (285)
T ss_dssp TSEEEEEECBSSCGGGSCHHHHHHHHHCSEEEECTTTSCHHHHTTSCTTCEEEECTTCCHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCEEEEEecCCCCHHHHHHHHHHHHHhCCEEEEeCCCCCHHHHHhcCCCCEEEecCCCCHHHHHHHHHHHHHCCCeEEEE
Confidence 46899999999999999999999999999999988888888888777777777666667888889999999999999999
Q ss_pred ccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCC------ccEEEEEEeCCCCc---chHHHHHhhhC
Q 024054 160 SDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLAT------DEFTFVGFLPKHAR---SRTERLMLSAN 230 (273)
Q Consensus 160 S~~GDP~iys~~~~l~~~l~~~gi~vevIPGISS~~aAaA~lG~pl------~~~~~ig~lp~~~~---~r~~~L~~l~~ 230 (273)
+ .|||++||++.++++.+.+.|+++++||||||+++|+|++|+|| +++.++ +.|++ .+.+.+..+++
T Consensus 100 ~-~GDP~i~g~~~~l~~~l~~~gi~veviPGiSS~~aa~a~~G~pl~~~~~~~~~~~~---~~~g~~~~~~~~~l~~l~~ 175 (285)
T 1cbf_A 100 H-TGDPAMYGAIMEQMVLLKREGVDIEIVPGVTSVFAAAAAAEAELTIPDLTQTVILT---RAEGRTPVPEFEKLTDLAK 175 (285)
T ss_dssp E-SBCTTTTCCCHHHHHHHHHTTCEEEEECCCCHHHHHHHHTTCCSCBTTTBCCEEEE---ECCSSSCCCGGGCHHHHHT
T ss_pred e-CCCccccccHHHHHHHHHHCCCcEEEECCchHHHHHHHHcCCCcccCCcceeEEEe---ccCCCCCcchHHHHHHHhc
Confidence 5 89999999999999999999999999999999999999999998 466665 33433 23356788888
Q ss_pred CCCeEEEEeCcccHHHHHHHHhh-hcCCCcEEEeEehhhhh
Q 024054 231 EVKTQIFYVPPHKLLQFLEETSL-LFGYSRYIRYLKILFLF 270 (273)
Q Consensus 231 ~~~tlVl~~~~~~l~~i~~~L~e-~~~~d~~v~v~~~l~~~ 270 (273)
...|+|||++++++.++++.|.+ ++++++++++++++|.-
T Consensus 176 ~~~tlvl~~~~~~~~~i~~~L~~~g~~~~~~v~v~~~lg~~ 216 (285)
T 1cbf_A 176 HKCTIALFLSSTLTKKVMKEFINAGWSEDTPVVVVYKATWP 216 (285)
T ss_dssp TCSEEEEESCTTCHHHHHHHHHHTTCCTTCEEEEEESTTST
T ss_pred CCCeEEEECcHHHHHHHHHHHHhcCCCCCCeEEEEEECCcC
Confidence 88999999999999999999998 88889999999999863
No 6
>1s4d_A Uroporphyrin-III C-methyltransferase; tetrapyrrole biosynthesis, cobalamin, SAM, SAH, uroporphyrin methyltransferase; HET: SAH; 2.70A {Pseudomonas denitrificans} SCOP: c.90.1.1
Probab=100.00 E-value=1.5e-35 Score=270.34 Aligned_cols=188 Identities=18% Similarity=0.172 Sum_probs=161.5
Q ss_pred CCCCeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhccCCCcEEec------CCCCHHHHHHHHHHHHh
Q 024054 78 PLEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSY------HKFNESQREQTVLNRLK 151 (273)
Q Consensus 78 ~~~g~l~iVGvGPGdpdlLTlrA~~~L~~ADvV~~~~~~~~~~ll~~~~~~~~~i~~------~~~~~~~~~~~ii~~l~ 151 (273)
..+|+||+||+|||||++||+||+++|++||+|++ ++++++++++.+..+++++.. +..+++++.+.+++.++
T Consensus 12 ~~~g~l~lVG~GpGd~~lLTl~A~~~L~~ADvV~~-d~~~~~~ll~~~~~~~~~~~~~k~~~~~~~~~~~i~~~l~~~~~ 90 (280)
T 1s4d_A 12 LEKGSVWLVGAGPGDPGLLTLHAANALRQADVIVH-DALVNEDCLKLARPGAVLEFAGKRGGKPSPKQRDISLRLVELAR 90 (280)
T ss_dssp CCSSCEEEEECBSSCTTSSBHHHHHHHHHCSEEEE-CSCSCTTGGGGSSTTCCEEECSCCC--CCCCHHHHHHHHHHHHH
T ss_pred CCCcEEEEEecCCCCHHHHHHHHHHHHHhCCEEEE-cCCCCHHHHHhccCCCEEEeccccccccccCHHHHHHHHHHHHh
Confidence 34589999999999999999999999999999999 567778888888777776643 23467788888999999
Q ss_pred CCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCc------cEEEEEEeCCCCcch----
Q 024054 152 QGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATD------EFTFVGFLPKHARSR---- 221 (273)
Q Consensus 152 ~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~vevIPGISS~~aAaA~lG~pl~------~~~~ig~lp~~~~~r---- 221 (273)
+|++|++++ .|||++||++.++++.+.+.|+++++||||||+++|+|++|+||+ ++.|+ |.|+++.
T Consensus 91 ~G~~Vv~L~-~GDP~i~g~g~~l~~~l~~~gi~veviPGiSs~~aa~a~~Gipl~~~~~~~~~~~~---~~~~~~~~~~~ 166 (280)
T 1s4d_A 91 AGNRVLRLK-GGDPFVFGRGGEEALTLVEHQVPFRIVPGITAGIGGLAYAGIPVTHREVNHAVTFL---TGHDSSGLVPD 166 (280)
T ss_dssp TTCCEEEEE-SBCTTSSSSHHHHHHHHHTTTCCEEEECCCCTTTHHHHHTTCCSCCTTTCSEEEEE---ECCC-------
T ss_pred CCCeEEEEc-CCCCccccCHHHHHHHHHHCCCCEEEEcCccHHHHHHHHcCCCccCCCcccEEEEE---CCcCCcccccc
Confidence 999999995 899999999999999999999999999999999999999999995 44554 7776431
Q ss_pred HHHHHhhhCCCCeEEEEeCcccHHHHHHHHhh-hcCCCcEEEeEehhhhh
Q 024054 222 TERLMLSANEVKTQIFYVPPHKLLQFLEETSL-LFGYSRYIRYLKILFLF 270 (273)
Q Consensus 222 ~~~L~~l~~~~~tlVl~~~~~~l~~i~~~L~e-~~~~d~~v~v~~~l~~~ 270 (273)
...|+.+++...|+|||++.+++.++++.|.+ +++++++++++++++.-
T Consensus 167 ~~~~~~l~~~~~tlVl~~~~~~~~~i~~~L~~~G~~~~~~v~v~~~l~~~ 216 (280)
T 1s4d_A 167 RINWQGIASGSPVIVMYMAMKHIGAITANLIAGGRSPDEPVAFVCNAATP 216 (280)
T ss_dssp CCCHHHHHTTCSEEEEESCSTTHHHHHHHHHHTTCCTTCEEEEEESTTST
T ss_pred cccHHHHhCCCCeEEEECchhhHHHHHHHHHhcCCCCCCEEEEEEeCCCC
Confidence 13577788888999999999999999999998 68889999999999864
No 7
>2ybo_A Methyltransferase; SUMT, NIRE, heme D1 biosynthesis; HET: SAH; 2.00A {Pseudomonas aeruginosa} PDB: 2ybq_A*
Probab=100.00 E-value=3.9e-35 Score=269.57 Aligned_cols=186 Identities=18% Similarity=0.186 Sum_probs=160.7
Q ss_pred CCeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhccCCCcEEec------CCCCHHHHHHHHHHHHhCC
Q 024054 80 EPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSY------HKFNESQREQTVLNRLKQG 153 (273)
Q Consensus 80 ~g~l~iVGvGPGdpdlLTlrA~~~L~~ADvV~~~~~~~~~~ll~~~~~~~~~i~~------~~~~~~~~~~~ii~~l~~G 153 (273)
+|+||+||+|||||++||+||+++|++||+|++ +++.++++++.+..+++.+.. +..+++++.+.+++.+++|
T Consensus 24 ~g~l~lVG~GpGdp~lLTlrA~~~L~~ADvV~~-d~~~~~~il~~~~~~~~~i~~~k~~~~~~~~~~~i~~~l~~~~~~G 102 (294)
T 2ybo_A 24 AGSVALVGAGPGDPGLLTLRAWALLQQAEVVVY-DRLVARELIALLPESCQRIYVGKRCGHHSLPQEEINELLVRLARQQ 102 (294)
T ss_dssp TTCEEEEEEESSCGGGSCHHHHHHHTTCSEEEE-CTTSCHHHHHHSCTTSEEEECC--------CHHHHHHHHHHHHHTT
T ss_pred CCEEEEEecCCCCHHHHHHHHHHHHHcCCEEEE-cCCCCHHHHHhcccCCeEEecccccccccCCHHHHHHHHHHHHHCC
Confidence 489999999999999999999999999999999 567888899888766555432 2335677788888999999
Q ss_pred CeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCC------ccEEEEEEeCCCCcc---hHHH
Q 024054 154 EIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLAT------DEFTFVGFLPKHARS---RTER 224 (273)
Q Consensus 154 ~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~vevIPGISS~~aAaA~lG~pl------~~~~~ig~lp~~~~~---r~~~ 224 (273)
++|+++ ++|||++||++.++++.+.+.|+++++||||||+++|+|++|+|| +++.|+ |.|++. +...
T Consensus 103 ~~Vv~L-~~GDP~i~g~g~~l~~~l~~~gi~vevIPGiSS~~aa~a~~Giplt~~~~~~~~~~~---sg~~~~~~~~~~~ 178 (294)
T 2ybo_A 103 RRVVRL-KGGDPFIFGRGAEELERLLEAGVDCQVVPGVTAASGCSTYAGIPLTHRDLAQSCTFV---TGHLQNDGRLDLD 178 (294)
T ss_dssp CCEEEE-EEBCTTSSSSHHHHHHHHHHTTCCEEEECCCCHHHHHHHHTTCCSCBTTTBSCEEEE---ECSCCTTSSCCCC
T ss_pred CeEEEE-cCCCCCccCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHcCCCcccCCCCcEEEEE---cccCCcccchhhH
Confidence 999999 799999999999999999999999999999999999999999999 578877 555432 1235
Q ss_pred HHhhhCCCCeEEEEeCcccHHHHHHHHhh-hcCCCcEEEeEehhhhh
Q 024054 225 LMLSANEVKTQIFYVPPHKLLQFLEETSL-LFGYSRYIRYLKILFLF 270 (273)
Q Consensus 225 L~~l~~~~~tlVl~~~~~~l~~i~~~L~e-~~~~d~~v~v~~~l~~~ 270 (273)
++.+++...|+|||++.+++.++++.|.+ +++++++++++++++.-
T Consensus 179 ~~~l~~~~~tlVl~~~~~~~~~i~~~L~~~G~~~~~~v~v~~~l~~~ 225 (294)
T 2ybo_A 179 WAGLARGKQTLVFYMGLGNLAEIAARLVEHGLASDTPAALVSQGTQA 225 (294)
T ss_dssp HHHHTSSSCEEEEESCGGGHHHHHHHHHHTTCCTTCEEEEEESTTST
T ss_pred HHHHhcCCCeEEEECcHHHHHHHHHHHHhcCCCCCCEEEEEEeCCCC
Confidence 78888888999999999999999999998 68889999999999864
No 8
>1ve2_A Uroporphyrin-III C-methyltransferase; heme, biosynthesis, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: c.90.1.1
Probab=100.00 E-value=3.8e-35 Score=260.48 Aligned_cols=179 Identities=27% Similarity=0.323 Sum_probs=148.5
Q ss_pred CCCeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhccCCCcEEec------CCCCHHHHHHHHHHHHhC
Q 024054 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSY------HKFNESQREQTVLNRLKQ 152 (273)
Q Consensus 79 ~~g~l~iVGvGPGdpdlLTlrA~~~L~~ADvV~~~~~~~~~~ll~~~~~~~~~i~~------~~~~~~~~~~~ii~~l~~ 152 (273)
|+|+||+||+|||||++||+||+++|++||+|++ +++.++++++.+ +++++.. +..++++..+.+++.+++
T Consensus 1 M~g~l~vVG~GpG~~~~LT~~A~~~L~~advv~~-~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 77 (235)
T 1ve2_A 1 MRGKVYLVGAGFGGPEHLTLKALRVLEVAEVVLH-DRLVHPGVLALA--KGELVPVGKEGYGGKTPQEAITARLIALARE 77 (235)
T ss_dssp CCCEEEEEECBSSSGGGSBHHHHHHHHHCSEEEE-CTTSCHHHHTTC--CSEEEEC-------CCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEEeeCCCCHHHHHHHHHHHHHhCCEEEE-eCCCCHHHHHhh--CcEEEEecccCcccccCHHHHHHHHHHHHHc
Confidence 5689999999999999999999999999999999 467788888766 4555432 234567778888899999
Q ss_pred CCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCC------ccEEEEEEeCCCCcchHHHHH
Q 024054 153 GEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLAT------DEFTFVGFLPKHARSRTERLM 226 (273)
Q Consensus 153 G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~vevIPGISS~~aAaA~lG~pl------~~~~~ig~lp~~~~~r~~~L~ 226 (273)
|++|+++ ++|||++||++.++++.+.+.|+++++||||||+++|+|++|+|| +++.++ |.|+ . .+
T Consensus 78 g~~V~~l-~~GDP~i~~~~~~l~~~l~~~gi~v~viPGiSs~~aa~a~~g~pl~~~~~~~~~~~~---s~~~-~-~~--- 148 (235)
T 1ve2_A 78 GRVVARL-KGGDPMVFGRGGEEALALRRAGIPFEVVPGVTSAVGALSALGLPLTHRGLARSFAVA---TGHD-P-AL--- 148 (235)
T ss_dssp TCEEEEE-ESBCTTSSTTHHHHHHHHHHHTCCEEEECCCCTTHHHHHHTTCCSCBTTTBSCEEEE---ESSC-T-TS---
T ss_pred CCeEEEE-cCCCCCcccCHHHHHHHHHHCCCCEEEECCHhHHHHHHHHcCCCcccCCcccEEEEe---CCCC-c-hh---
Confidence 9999999 799999999999999999988999999999999999999999999 567776 6665 2 12
Q ss_pred hhhCCCCeEEEEeCcccHHHHHHHHhhhcCCCcEEEeEehhhhh
Q 024054 227 LSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRYIRYLKILFLF 270 (273)
Q Consensus 227 ~l~~~~~tlVl~~~~~~l~~i~~~L~e~~~~d~~v~v~~~l~~~ 270 (273)
.+. ...|+|+|++++++.++++.|.+++++++++++++++|.-
T Consensus 149 ~l~-~~~t~vl~~~~~~~~~i~~~L~~g~~~~~~v~v~~~l~~~ 191 (235)
T 1ve2_A 149 PLP-RADTLVLLMPLHTLGGLKERLLERFPPETPLALLARVGWP 191 (235)
T ss_dssp CCC-BCSEEEEEC------CHHHHHHTTSCTTSEEEEEESTTST
T ss_pred hhc-cCCeEEEEcChhhHHHHHHHHHhcCCCCCeEEEEEECCcC
Confidence 444 6789999999999999999999988889999999999863
No 9
>3nut_A Precorrin-3 methylase; vitamin B12 pathway, cobalamin, methyltransferase, transfera; HET: SAH; 2.22A {Rhodobacter capsulatus}
Probab=100.00 E-value=1.2e-34 Score=260.34 Aligned_cols=189 Identities=18% Similarity=0.171 Sum_probs=149.2
Q ss_pred CCCCCCeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhc--cCCCcEEecCCCCHHHHHHHHHHHHhCC
Q 024054 76 RGPLEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYY--NIKTPLLSYHKFNESQREQTVLNRLKQG 153 (273)
Q Consensus 76 ~~~~~g~l~iVGvGPGdpdlLTlrA~~~L~~ADvV~~~~~~~~~~ll~~~--~~~~~~i~~~~~~~~~~~~~ii~~l~~G 153 (273)
+-.|.|-+|+||+|||||++||+||+++|++||+|++++++. +.+ ..+++++...+.++.+..+.+++.+++|
T Consensus 4 ~~~~~~~~~~vG~GPGd~~lLT~rA~~~L~~AdvI~g~d~~~-----~~~~~~~~~~~~~~~~~~ei~~~~~li~~~~~G 78 (251)
T 3nut_A 4 HHHMSGWVTVAGLGPGREDLVTPEVTAALAEATDIVGYIPYV-----ARIAPREGLTLHPTDNRVELDRATHALEMAAEG 78 (251)
T ss_dssp ----CCEEEEEECBSSCGGGSCHHHHHHHHHCSEEEECGGGG-----TTCCCCTTCEEEECCSSCCHHHHHHHHHHHHTT
T ss_pred cccccccEEEEEECCCCHHHHHHHHHHHHHhCCEEEEcCccc-----ccccccCCCEEeecCCHHHHHHHHHHHHHHHCC
Confidence 356889999999999999999999999999999999987543 322 2345555444434444446788889999
Q ss_pred CeEEEEccCCCCCCCchHHHHHHHhhh----CCCCEEEEccchHHHHHHHhCCCCC-ccEEEEEEeCCC--CcchHHHHH
Q 024054 154 EIVALISDAGTPGISDPGTELAKLCVD----EKIPVVPIPGASAFVAALSASGLAT-DEFTFVGFLPKH--ARSRTERLM 226 (273)
Q Consensus 154 ~~Vv~LS~~GDP~iys~~~~l~~~l~~----~gi~vevIPGISS~~aAaA~lG~pl-~~~~~ig~lp~~--~~~r~~~L~ 226 (273)
++|+++ .+|||++||++.++++.+.+ .|+++++||||||+++|+|++|+|| +++.++++.+.. +.+..+.++
T Consensus 79 ~~Vv~L-~~GDP~i~g~g~~l~~~l~~~~~~~gi~veviPGiSS~~aa~a~~G~plt~~~~~~s~~~~~~~~~~~~~~l~ 157 (251)
T 3nut_A 79 RRVVVV-SSGDPGVFAMASALFEALEAHPEHAGTEIRILPGITAMLAAAAAAGAPLGHDFCAINLSDNLKPFEILEKRLR 157 (251)
T ss_dssp CEEEEE-ESBCTTSSSHHHHHHHHHHHCGGGTTCCEEEECCCCHHHHHHHHHEETTSSSEEEEESCCTTSCHHHHHHHHH
T ss_pred CeEEEE-eCCCcccccCHHHHHHHHHhhcccCCCcEEEECCHHHHHHHHHHhCCCccCCeEEEEecCCCCChHHHHHHHH
Confidence 999999 49999999999999999997 7999999999999999999999999 688888554321 112234566
Q ss_pred hhhCCCCeEEEEeCc-----ccHHHHHHHHhhhcCCCcEEEeEehhhhh
Q 024054 227 LSANEVKTQIFYVPP-----HKLLQFLEETSLLFGYSRYIRYLKILFLF 270 (273)
Q Consensus 227 ~l~~~~~tlVl~~~~-----~~l~~i~~~L~e~~~~d~~v~v~~~l~~~ 270 (273)
.+++.+.|+|||++. +++.++.+.|.++++++++++++++++.-
T Consensus 158 ~l~~~~~tlvl~~~~~~~~p~~i~~~~~ll~~g~~~~~~v~v~~~l~~~ 206 (251)
T 3nut_A 158 HAARGDFAMAFYNPRSKSRPHQFTRVLEILREECEPGRLILFARAVTTP 206 (251)
T ss_dssp HHHHTTCEEEEESCSCSSSTTHHHHHHHHHHHHSCTTCEEEEEESTTST
T ss_pred HHhCCCCEEEEECCccccchhHHHHHHHHHHhCCCCCCEEEEEeeCCCC
Confidence 666777899999975 36777777777788889999999999863
No 10
>1va0_A Uroporphyrin-III C-methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.97A {Thermus thermophilus} SCOP: c.90.1.1 PDB: 1v9a_A
Probab=100.00 E-value=1e-33 Score=251.87 Aligned_cols=178 Identities=20% Similarity=0.203 Sum_probs=151.4
Q ss_pred CeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhccCCCcEEecC-----CCCHHHHHHHHHHHHhCCCe
Q 024054 81 PGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYH-----KFNESQREQTVLNRLKQGEI 155 (273)
Q Consensus 81 g~l~iVGvGPGdpdlLTlrA~~~L~~ADvV~~~~~~~~~~ll~~~~~~~~~i~~~-----~~~~~~~~~~ii~~l~~G~~ 155 (273)
|+||+||+|||||++||+||+++|++||+|++ +++.++++++.+. ++.+..+ ..++++..+.+++.+++|++
T Consensus 1 G~l~iVG~GpG~~~~LT~~A~~~L~~advI~~-~~~~~~~~l~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~~~g~~ 77 (239)
T 1va0_A 1 GRVYLVGAGPGDPELLTLKAYRLLKEAPVVLY-DRLVDERVLALAP--GEKVYVGKEEGESEKQEEIHRLLLRHARAHPF 77 (239)
T ss_dssp CEEEEEECBSSCGGGSBHHHHHHHHHCSEEEE-CTTSCHHHHTTCC--SEEEECCCCC----CHHHHHHHHHHHHHTSSE
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhCCEEEE-cCCCCHHHHhhcc--ccEEecccccccccCHHHHHHHHHHHHHCCCc
Confidence 68999999999999999999999999999999 4677888888765 4444333 34567778888899999999
Q ss_pred EEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCC------ccEEEEEEeCCCCcch-HHHHHhh
Q 024054 156 VALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLAT------DEFTFVGFLPKHARSR-TERLMLS 228 (273)
Q Consensus 156 Vv~LS~~GDP~iys~~~~l~~~l~~~gi~vevIPGISS~~aAaA~lG~pl------~~~~~ig~lp~~~~~r-~~~L~~l 228 (273)
|+++ ++|||++||++.++++.+.+.|++++++|||||+++| |+|| +++.++ +.|++.. ...++.+
T Consensus 78 V~~l-~~GDP~i~~~~~~l~~~l~~~gi~v~viPGiSs~~aa----g~pl~~~~~~~~~~~~---~~~~~~~~~~~~~~l 149 (239)
T 1va0_A 78 VVRL-KGGDPMVFGRGGEEVLFLLRHGVPVEVVPGVTSLLAS----GLPLTHRGLAHGFAAV---SGVLEGGGYPDLRPF 149 (239)
T ss_dssp EEEE-ESBCTTSSSSHHHHHHHHHHTTCCEEEECCCCGGGTT----CCCSSBTTTBSEEEEE---ESSCGGGCCCCCTTT
T ss_pred EEEE-eCCCCccccCHHHHHHHHHHCCCcEEEECCcchHhhc----CCCcccCCccceEEEE---eccCCccchhhHHHh
Confidence 9999 7999999999999999999999999999999999999 9999 567777 5665321 1246667
Q ss_pred hCCCCeEEEEeCcccHHHHHHHHhh-hcCCCcEEEeEehhhhh
Q 024054 229 ANEVKTQIFYVPPHKLLQFLEETSL-LFGYSRYIRYLKILFLF 270 (273)
Q Consensus 229 ~~~~~tlVl~~~~~~l~~i~~~L~e-~~~~d~~v~v~~~l~~~ 270 (273)
.+. .|+|+|++++++.++++.|.+ +++++++++++++++.-
T Consensus 150 ~~~-~t~vl~~~~~~~~~i~~~L~~~g~~~~~~v~v~~~l~~~ 191 (239)
T 1va0_A 150 ARV-PTLVVLMGVGRRVWIAKELLRLGRDPREPTLFVERASTP 191 (239)
T ss_dssp TTC-SSEEEESCSTTHHHHHHHHHHTTCCTTCEEEEEETTTST
T ss_pred cCC-CcEEEEccHHHHHHHHHHHHhcCCCCCCcEEEEEECCCC
Confidence 777 999999999999999999998 68889999999999864
No 11
>2qbu_A Precorrin-2 methyltransferase; HET: SAH; 2.10A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=1.4e-33 Score=249.01 Aligned_cols=183 Identities=19% Similarity=0.198 Sum_probs=148.1
Q ss_pred CCCeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCC-----CHHHHhh-ccC---CCcEEe--cCCCC--------H
Q 024054 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRH-----SGKLLQY-YNI---KTPLLS--YHKFN--------E 139 (273)
Q Consensus 79 ~~g~l~iVGvGPGdpdlLTlrA~~~L~~ADvV~~~~~~~-----~~~ll~~-~~~---~~~~i~--~~~~~--------~ 139 (273)
|+|+||+||+|||||++||+||+++|++||+|++++++. +.++++. +.. +++++. +++.. .
T Consensus 1 M~g~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (232)
T 2qbu_A 1 MHGKLIGVGVGPGDSELLTLRAVNVLRSVPVICAPRSSSERESIALSIVEDILTERRDGCRILDPVFPMTDDRDELESHW 80 (232)
T ss_dssp CCCCEEEEECBSSCGGGSBHHHHHHHHHCSEEECCBCTTCSSCHHHHHHHHHHHHCSSCCEEECCBCCSCSSSTTHHHHH
T ss_pred CCceEEEEEcCCCChHHHHHHHHHHHHhCCEEEEeCCCCCccchHHHHHHHHhccccCCcEEEEecCCCCccHHHHHHHH
Confidence 568999999999999999999999999999999986543 2334432 222 455542 22221 3
Q ss_pred HHHHHHHHHHHhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCc----cEEEEEEeC
Q 024054 140 SQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATD----EFTFVGFLP 215 (273)
Q Consensus 140 ~~~~~~ii~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~vevIPGISS~~aAaA~lG~pl~----~~~~ig~lp 215 (273)
++..+.+++.+++|++|++++ .|||++||++.++++.+.+.|++++++|||||+++|+|++|+|++ .|.++ |
T Consensus 81 ~~~~~~i~~~~~~g~~V~~l~-~GDP~i~~~~~~l~~~~~~~gi~v~viPGiSs~~aa~a~~g~pl~~~~~~~~~~---~ 156 (232)
T 2qbu_A 81 DSAARMVAAELEDGRDVAFIT-LGDPSIYSTFSYLQQRIEDMGFKTEMVPGVTSFTACAATAGRTLVEGDEILLVV---P 156 (232)
T ss_dssp HHHHHHHHHHHHTTCCEEEEE-SBCTTBSCSHHHHHHHHHHTTCCEEEECCCCHHHHHHHHTTCCCBCTTCCEEEE---S
T ss_pred HHHHHHHHHHHHCCCeEEEEe-CCCCccchhHHHHHHHHHHCCCcEEEeCCccHHHHHHHHhCCCCCCCCceEEEE---e
Confidence 566778888889999999995 899999999999999999999999999999999999999999985 45554 6
Q ss_pred CCCcchHHHHHhhhCCCCeEEEEeCcccHHHHHHHHhhhcCCCcEEEeEehhhhh
Q 024054 216 KHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRYIRYLKILFLF 270 (273)
Q Consensus 216 ~~~~~r~~~L~~l~~~~~tlVl~~~~~~l~~i~~~L~e~~~~d~~v~v~~~l~~~ 270 (273)
.+.. .|...++...|+|||++++++.++++.|.+ .+.+++++++++++.-
T Consensus 157 ~~~~----~l~~~~~~~~t~vl~~~~~~~~~i~~~L~~-~g~~~~v~v~~~l~~~ 206 (232)
T 2qbu_A 157 RVDD----RFERVLRDVDACVIMKTSRHGRRAMEVVES-DPRGKDVVSVANCSMD 206 (232)
T ss_dssp SCCH----HHHHHGGGCSEEEESSHHHHHHHHHHHHHH-SSSCCEEEEEESTTST
T ss_pred CCHH----HHHHHhhcCCeEEEEcccCcHHHHHHHHHh-cCCCCcEEEEEECCCC
Confidence 5431 566666667899999999999999999998 3445899999999853
No 12
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=100.00 E-value=1.7e-33 Score=272.71 Aligned_cols=187 Identities=18% Similarity=0.209 Sum_probs=160.5
Q ss_pred CCCeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhccCCCcEEec------CCCCHHHHHHHHHHHHhC
Q 024054 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSY------HKFNESQREQTVLNRLKQ 152 (273)
Q Consensus 79 ~~g~l~iVGvGPGdpdlLTlrA~~~L~~ADvV~~~~~~~~~~ll~~~~~~~~~i~~------~~~~~~~~~~~ii~~l~~ 152 (273)
.+|+||+||+|||||++||+||+++|++||+|+++ +++++++++.+..+++.+.. +..++++..+.+++.+++
T Consensus 214 ~~g~l~lVG~GpGd~~lLTlrA~~~L~~ADvV~~d-~~~~~~il~~~~~~~~~~~~~k~~~~~~~~~~~i~~~l~~~~~~ 292 (457)
T 1pjq_A 214 HRGEVVLVGAGPGDAGLLTLKGLQQIQQADIVVYD-RLVSDDIMNLVRRDADRVFVGKRAGYHCVPQEEINQILLREAQK 292 (457)
T ss_dssp CCCEEEEEECBSSCGGGSBHHHHHHHHHCSEEEEC-TTSCHHHHTTSCTTSEEEECSCC---CCCTTHHHHHHHHHHHHT
T ss_pred CCcEEEEEeCCCCChHHccHHHHHHHHhCCEEEEe-CCCCHHHHhhcccCCEEEeccccccccCCCHHHHHHHHHHHHHC
Confidence 46899999999999999999999999999999994 67888899988776666543 233567788889999999
Q ss_pred CCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCC------ccEEEEEEeCCCCcch-HHHH
Q 024054 153 GEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLAT------DEFTFVGFLPKHARSR-TERL 225 (273)
Q Consensus 153 G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~vevIPGISS~~aAaA~lG~pl------~~~~~ig~lp~~~~~r-~~~L 225 (273)
|++|+++ ++|||++||++.++++.+.+.|++++++|||||+++|+|++|+|| +++.|+ +.|++.. ...|
T Consensus 293 G~~Vv~L-~~GDP~i~g~g~~l~~~l~~~gi~v~vvPGiSs~~aa~a~~Giplt~~~~~~~~~~v---sg~~~~~~~~~~ 368 (457)
T 1pjq_A 293 GKRVVRL-KGGDPFIFGRGGEELETLCHAGIPFSVVPGITAASGCSAYSGIPLTHRDYAQSVRLV---TGHLKTGGELDW 368 (457)
T ss_dssp TCEEEEE-ESBCTTTSSSHHHHHTTTTTTTCCEEEECCCCHHHHHHHHTTCCSCCTTTCSEEEEE---CC------CCCH
T ss_pred CCcEEEE-eCCCCCccCCHHHHHHHHHHCCCCEEEeCCHhHHHHHHHHcCCCccCCCccceEEEE---eCCCCCcchhhH
Confidence 9999999 799999999999999999999999999999999999999999999 466766 7776421 1237
Q ss_pred HhhhCCCCeEEEEeCcccHHHHHHHHhh-hcCCCcEEEeEehhhhh
Q 024054 226 MLSANEVKTQIFYVPPHKLLQFLEETSL-LFGYSRYIRYLKILFLF 270 (273)
Q Consensus 226 ~~l~~~~~tlVl~~~~~~l~~i~~~L~e-~~~~d~~v~v~~~l~~~ 270 (273)
..+++...|+|||++.+++.++++.|.+ +++++++++++++++.-
T Consensus 369 ~~l~~~~~t~Vl~~~~~~~~~i~~~L~~~g~~~~~~v~v~~~l~~~ 414 (457)
T 1pjq_A 369 ENLAAEKQTLVFYMGLNQAATIQEKLIAFGMQADMPVALVENGTSV 414 (457)
T ss_dssp HHHHSSSEEEEESSCSSSHHHHHHHHHHTTCCTTCEEEEEESTTST
T ss_pred HHHhcCCCeEEEEcchhhHHHHHHHHHhcCCCCCCEEEEEEECCCC
Confidence 7888888999999999999999999998 68889999999999864
No 13
>2e0n_A Precorrin-2 C20-methyltransferase; cobalt-factor II, tetrapyrrole, S-adenosylmethi transferase; HET: SAH; 2.00A {Chlorobaculum tepidum} PDB: 2e0k_A*
Probab=100.00 E-value=7.2e-33 Score=249.29 Aligned_cols=183 Identities=16% Similarity=0.152 Sum_probs=144.4
Q ss_pred CCCeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCC----HHHHhh-c----cCCCcEEe----cCCCC------H
Q 024054 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHS----GKLLQY-Y----NIKTPLLS----YHKFN------E 139 (273)
Q Consensus 79 ~~g~l~iVGvGPGdpdlLTlrA~~~L~~ADvV~~~~~~~~----~~ll~~-~----~~~~~~i~----~~~~~------~ 139 (273)
|+|+||+||+|||||++||+||+++|++||+|++++++.. ..+++. + ..+++++. +...+ .
T Consensus 3 ~~g~l~iVG~GpG~~~~LT~~A~~~L~~advV~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (259)
T 2e0n_A 3 NQGSIISVSLGPGDPGLITVKALSQLREADVIYYPGTVSASGAVTSVALDILKEFDLDPSKLRGMLVPMSRSRGAAEASY 82 (259)
T ss_dssp --CEEEEEECBSSCGGGSBHHHHHHHHHCSEEEEEEEECTTCCEECHHHHHHTTTTCCGGGEEEEEEECC---------C
T ss_pred CCcEEEEEEeCCCChHHHHHHHHHHHHhCCEEEEeccccccccHHHHHHHHHHhcCCCCCEEEeeccCCccchhhhHHHH
Confidence 4689999999999999999999999999999999854321 124432 2 23445542 22211 1
Q ss_pred HHHHHHHHHHHhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCc----cEEEEEEeC
Q 024054 140 SQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATD----EFTFVGFLP 215 (273)
Q Consensus 140 ~~~~~~ii~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~vevIPGISS~~aAaA~lG~pl~----~~~~ig~lp 215 (273)
++..+.|++.+++|++|++++ +|||++||++.++++.+.+.|+++++||||||+++|+|++|+||+ .|.++ |
T Consensus 83 ~~~~~~i~~~~~~g~~Va~l~-~GDP~~~~~~~~l~~~l~~~gi~v~viPGiSs~~aa~a~~G~pl~~~~~~~~~~---~ 158 (259)
T 2e0n_A 83 AANYASMAEEVQAGRRVAVVS-VGDGGFYSTASAIIERARRDGLDCSMTPGIPAFIAAGSAAGMPLALQSDSVLVL---A 158 (259)
T ss_dssp GGGHHHHHHHHHTTCEEEEEE-SBCTTBSCTHHHHHHHHHTTTCCEEEECCCCHHHHHHHHTTCCSBCTTCCEEEE---C
T ss_pred HHHHHHHHHHHHCCCeEEEEe-CCCCcccccHHHHHHHHHHCCCCEEEeCChhHHHHHHHhcCCCCcCCCceEEEE---c
Confidence 456788888899999999994 999999999999999999999999999999999999999999994 45654 6
Q ss_pred CCCcchHHHHHhhhCCCCeEEEEeCcccHHHHHHHHhhhcCCCcEEEeEehhhhh
Q 024054 216 KHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRYIRYLKILFLF 270 (273)
Q Consensus 216 ~~~~~r~~~L~~l~~~~~tlVl~~~~~~l~~i~~~L~e~~~~d~~v~v~~~l~~~ 270 (273)
.+.. .+.+...++...|+|||++++++.++++.|.+. + .++++++++|.-
T Consensus 159 ~~~~--~~~l~~~~~~~~t~vl~~~~~~~~~i~~~L~~~-g--~~v~v~~~l~~~ 208 (259)
T 2e0n_A 159 QIDE--IGELERALVTHSTVVVMKLSTVRDELVSFLERY-A--KPFLYAEKVGMA 208 (259)
T ss_dssp SCSS--THHHHHHHTTCSEEEECCTTSSGGGHHHHHHHH-C--SCEEEEESTTST
T ss_pred CCCC--HHHHHHHhhcCCEEEEEcccccHHHHHHHHHhC-C--CCEEEEEECCCC
Confidence 6542 356777777789999999999999999999884 2 229999999863
No 14
>2zvb_A Precorrin-3 C17-methyltransferase; plasmid, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SAH; 2.00A {Thermus thermophilus} PDB: 2zvc_A*
Probab=100.00 E-value=2e-32 Score=252.01 Aligned_cols=184 Identities=23% Similarity=0.235 Sum_probs=151.4
Q ss_pred CeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhc--cCCCcEEecCCCCHHHHHHHHHHHHhCCCeEEE
Q 024054 81 PGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYY--NIKTPLLSYHKFNESQREQTVLNRLKQGEIVAL 158 (273)
Q Consensus 81 g~l~iVGvGPGdpdlLTlrA~~~L~~ADvV~~~~~~~~~~ll~~~--~~~~~~i~~~~~~~~~~~~~ii~~l~~G~~Vv~ 158 (273)
|+||+||+|||||++||+||+++|++||+|++++++ .++++.+ ..+++++.+++.++.+..+.+++.+++|++|++
T Consensus 2 G~l~lVG~GpGdp~lLT~rA~~~L~~ADvVig~~~~--l~ll~~~~~~~~k~~~~~~~~~e~~~~~~~l~~a~~G~~Va~ 79 (295)
T 2zvb_A 2 GELFLVGMGPGDLPGLTQRAREALEGAEVVIGYSTY--VKLLEEMGLLAGKEVVRKGMTEELDRAEEALERALSGQRVAL 79 (295)
T ss_dssp CEEEEEECBTSSGGGSCHHHHHHHHHCSEEECCHHH--HHHHHHHTCCTTSEEECTTCCSHHHHHHHHHHHHHTTCEEEE
T ss_pred CEEEEEECCCCChHHHHHHHHHHHHcCCEEEEeCcH--HHHHHHhhccCCCEEEecCCchHHHHHHHHHHHHHCCCcEEE
Confidence 899999999999999999999999999999987643 2455554 345667667776666777888888899999999
Q ss_pred EccCCCCCCCchHHHHHHHhhhCC--------------------CCEEEEccchHHHHHHHhCCCCC-ccEEEEEEeCCC
Q 024054 159 ISDAGTPGISDPGTELAKLCVDEK--------------------IPVVPIPGASAFVAALSASGLAT-DEFTFVGFLPKH 217 (273)
Q Consensus 159 LS~~GDP~iys~~~~l~~~l~~~g--------------------i~vevIPGISS~~aAaA~lG~pl-~~~~~ig~lp~~ 217 (273)
+ .+|||++|+.+.++.+.+.+.+ +++++||||||+++|+|++|+|| ++|.++ +.|
T Consensus 80 L-~~GDP~~yg~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~veVIPGiSS~~aaaA~lG~plt~~~~~i---s~~ 155 (295)
T 2zvb_A 80 V-SGGDPGIYGMAAPVLELMEERGLKRVDGGVGLPGRFAGEEGEVFLAVIPGVTAANAVASLLGSPLAHDTCLI---SLS 155 (295)
T ss_dssp E-ESBCTTSSSSHHHHHHHHHHTTCEECSCCCSSSEEEEETTEEEEEEEECCCCHHHHHHHTTEETTSSCEEEE---ECC
T ss_pred E-eCCCCChhhhHHHHHHHHHHhcccccccccccccccccccCCCcEEEECCHhHHHHHHHHhCCCccCCCeEE---eCC
Confidence 9 5999999999999988887654 89999999999999999999999 688887 444
Q ss_pred Cc-----chHHHHHhhhCCCCeEEEEeCc-----ccHHHHHHHHhhhcCCCcEEEeEehhhhh
Q 024054 218 AR-----SRTERLMLSANEVKTQIFYVPP-----HKLLQFLEETSLLFGYSRYIRYLKILFLF 270 (273)
Q Consensus 218 ~~-----~r~~~L~~l~~~~~tlVl~~~~-----~~l~~i~~~L~e~~~~d~~v~v~~~l~~~ 270 (273)
+. ...+.++.+++.+.|+|||++. +++.++.+.|.+.++++++++++++++.-
T Consensus 156 ~~~~~~~~l~~~l~~~~~~~~t~vl~~~~~~~r~~~~~~i~~~L~~~~~~~~~v~vv~~l~~~ 218 (295)
T 2zvb_A 156 DLLTPWPLIERRLHAAGQGDFVVVLYNPQSKRRDWQLRKSAEILLEYRPKETPAALVKSAYRK 218 (295)
T ss_dssp CTTSCHHHHHHHHHHHHHTTCEEEEESCCCSSCTTHHHHHHHHHTTTSCTTCEEEEEESTTST
T ss_pred CCCCCHHHHHHHHHHhhcCCcEEEEEcCCcccchhhHHHHHHHHHhcCCCCCEEEEEecCCCC
Confidence 32 1223455566677899999963 37999999999877789999999999853
No 15
>3nd1_A Precorrin-6A synthase/COBF protein; methyltransferase, deacetylase, transferase; HET: SAH; 1.50A {Rhodobacter capsulatus}
Probab=99.97 E-value=8.8e-33 Score=252.22 Aligned_cols=184 Identities=16% Similarity=0.111 Sum_probs=137.6
Q ss_pred CCCCCCeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCC--------HHHHhhcc-C-CCcEEecCC--CC-----
Q 024054 76 RGPLEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHS--------GKLLQYYN-I-KTPLLSYHK--FN----- 138 (273)
Q Consensus 76 ~~~~~g~l~iVGvGPGdpdlLTlrA~~~L~~ADvV~~~~~~~~--------~~ll~~~~-~-~~~~i~~~~--~~----- 138 (273)
...|+|+||+||+||||||+||+||+++|++||+|++++++.. .++++.+. . +++++.+.. .+
T Consensus 17 ~~~m~g~ly~VG~GPGdpellTlrA~~~L~~aDvI~~~~t~~~~~~l~~~a~~il~~~~~~~~~~~i~~~~pm~~~~~~~ 96 (275)
T 3nd1_A 17 RGSHMIELSLIGIGTGNPRHITGQAVDAMNAADLILIPLKGADKSDLAGLRRQICAAHLTNPATKVIDFALPVRDASNPS 96 (275)
T ss_dssp ---CCEEEEEEECBSSCGGGCBHHHHHHHHHCSEEEEECCCSCGGGCHHHHHHHHHHHCCCTTCEEEEECCCCC------
T ss_pred CCCCCcEEEEEEeCCCCHHHHHHHHHHHHHhCCEEEecCCcccchhhhhhHHHHHHHhhcccCcEEEEecCCccccccch
Confidence 3568899999999999999999999999999999999976544 56777763 3 256654432 21
Q ss_pred ------------HHHHHHHHHHHHhC-CCeEEEEccCCCCCCCchHHHHHHHhhh-CCCCEEEEccchHHHHHHHhCCCC
Q 024054 139 ------------ESQREQTVLNRLKQ-GEIVALISDAGTPGISDPGTELAKLCVD-EKIPVVPIPGASAFVAALSASGLA 204 (273)
Q Consensus 139 ------------~~~~~~~ii~~l~~-G~~Vv~LS~~GDP~iys~~~~l~~~l~~-~gi~vevIPGISS~~aAaA~lG~p 204 (273)
+++..+.|++.+++ |++|++++ +|||++||++.++++.+.+ .|+++++||||||+++|+|++|+|
T Consensus 97 Y~~~~~~~~~~~~~~~~~~i~~~l~~~G~~Va~l~-~GDP~i~~~~~~l~~~l~~~~gi~veviPGiSs~~aa~a~~g~p 175 (275)
T 3nd1_A 97 YRKGVDDWHDAIAETWLSEITAHVPGLEGRVALLV-WGDPSLYDSTLRIAERLKSRLPLTTKVIPGITAIQALCAAHAIP 175 (275)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHCTTSCEEEEEEE-SBCTTSSCSHHHHHHTTTTTSSEEEEEECCCCHHHHHHHHHTCC
T ss_pred hhhhhhhhhHhHHHHHHHHHHHHHHhCCCeEEEEe-CCCCcccchHHHHHHHHHHhcCCCEEEecCccHHHHHHHHcCCC
Confidence 11233457788889 99999995 9999999999999999988 799999999999999999999999
Q ss_pred CccE-EEEEEeCCCCcchHHHHHhhhCCCCeEEEEeCcccHHHHHHHHhhhcCCCcEEEeEehhhhh
Q 024054 205 TDEF-TFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRYIRYLKILFLF 270 (273)
Q Consensus 205 l~~~-~~ig~lp~~~~~r~~~L~~l~~~~~tlVl~~~~~~l~~i~~~L~e~~~~d~~v~v~~~l~~~ 270 (273)
|+++ .+++++|.+. .+.++.+...+.++|+|++.+++.++ .++++++++++|++.-
T Consensus 176 l~~~~~~~~~l~g~~---~~~~~~~~~~~~~vvl~~~~~~l~~i-------~~~~~~v~v~~~l~~~ 232 (275)
T 3nd1_A 176 LNDIGAPVVITTGRQ---LRDHGWPAGTETVVAMLDGECSFQSL-------PPDGLTIFWGACVAMP 232 (275)
T ss_dssp SSCTTCCEEEEEHHH---HHHHCSCTTCSEEEEESCSSCGGGGS-------CCTTEEEEEEESTTST
T ss_pred CccCCcEEEEEcCCC---cchHHHHhCCCCEEEEECCcccHHHH-------hCCCCEEEehhccCCC
Confidence 9876 3445556432 11222223344456667776766443 2357999999999863
No 16
>1vhv_A Diphthine synthase; structural genomics, transferase; HET: MSE; 1.75A {Archaeoglobus fulgidus} SCOP: c.90.1.1
Probab=99.97 E-value=2.3e-31 Score=240.98 Aligned_cols=190 Identities=14% Similarity=0.126 Sum_probs=137.1
Q ss_pred CCCCCCeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCC-----CHHHHhhccCCCcEEecCCCCHHHHHHHHHHHH
Q 024054 76 RGPLEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRH-----SGKLLQYYNIKTPLLSYHKFNESQREQTVLNRL 150 (273)
Q Consensus 76 ~~~~~g~l~iVGvGPGdpdlLTlrA~~~L~~ADvV~~~~~~~-----~~~ll~~~~~~~~~i~~~~~~~~~~~~~ii~~l 150 (273)
++..+|+||+||+|||||++||+||+++|++||+|++++ +. ..+.++.+. +++.........++.++.+++.+
T Consensus 8 ~~~~~g~l~vVG~GpGd~~lLTlrA~~~L~~ADvI~~~~-~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~a 85 (268)
T 1vhv_A 8 HGGHMSLLTFVGLGLWDVKDISVKGLEAVREADEVYVEY-YTSKLLSSIEEMEEFF-GKRVVELERSDLEENSFRLIERA 85 (268)
T ss_dssp -----CEEEEEECBSSSGGGSBHHHHHHHHHCSEEEEEC-SSCCCSSCHHHHHHHH-TSCCEEECHHHHTTTHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHhcCCEEEECC-chHhhhccHHHHHHHh-CCCccccchhHHHHHHHHHHHHh
Confidence 345579999999999999999999999999999999975 33 123333322 22221111111234567777777
Q ss_pred hCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCccEEEEEEeC--CCCcchHHHHHhh
Q 024054 151 KQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLP--KHARSRTERLMLS 228 (273)
Q Consensus 151 ~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~vevIPGISS~~aAaA~lG~pl~~~~~ig~lp--~~~~~r~~~L~~l 228 (273)
++ ++|++++ +|||++||++.++++++.+.|+++++||||||+++|+|++|+||+++.+...++ .+........+.+
T Consensus 86 ~~-~~Va~L~-~GDP~iy~~~~~l~~~~~~~gi~vevIPGiSs~~aa~a~~G~pl~~~~~~~sv~~~~~~~~~~~~~~~l 163 (268)
T 1vhv_A 86 KS-KSVVLLV-PGDPMVATTHSAIKLEAERKGVKTRIIHGASISTAVCGLTGLHNYRFGKSATVSWHRSQTPVNVIKANR 163 (268)
T ss_dssp TT-SEEEEEE-SBCTTSSSHHHHHHHHHHHTTCCEEEECCCCHHHHHHHHHCCCGGGBCCCEEECSSCCSHHHHHHHHHH
T ss_pred CC-CCEEEEe-CCCCcccCcHHHHHHHHHHCCCcEEEECCccHHHHHHHHcCCCcccCcceEEEEecCCCchHHHHHHHh
Confidence 65 8999995 999999999999999999999999999999999999999999999753332121 1121112223456
Q ss_pred hCCCCeEEE------EeCcccHHHHHHHHhhhcCCCcEEEeEehhhhh
Q 024054 229 ANEVKTQIF------YVPPHKLLQFLEETSLLFGYSRYIRYLKILFLF 270 (273)
Q Consensus 229 ~~~~~tlVl------~~~~~~l~~i~~~L~e~~~~d~~v~v~~~l~~~ 270 (273)
.+...|+|+ |++++++.+.+..+.++++ ++++++++|++.-
T Consensus 164 ~~~~~tlvl~d~~~~~~~~~~~~~~L~~l~~~~~-~~~v~v~~~l~~~ 210 (268)
T 1vhv_A 164 SIDAHTLLFLDLHPEPMTIGHAVENLIAEDAQMK-DLYAVGIARAGSG 210 (268)
T ss_dssp HTTCBEEEEECCSSSCCCHHHHHHHHHHHCGGGG-GSEEEEEESTTSS
T ss_pred ccCCCeEEEEcCchhhcCHHHHHHHHHHHHhcCC-CcEEEEEEcCCCC
Confidence 666789999 7777777777777666777 9999999999853
No 17
>2z6r_A Diphthine synthase; methyltransferase, S-adenosyl-L-methionine, transferase; HET: SAH MES; 1.50A {Pyrococcus horikoshii} PDB: 2dek_A* 1wng_A* 1vce_A* 2ed3_A* 2e4r_A* 2owg_A* 2ek3_A* 2pcm_A* 2p5c_A* 2hut_A* 2emr_A* 2el3_A* 2el0_A* 2ejk_A* 2eld_A* 2el2_A* 2eka_A* 2eh5_A* 2pcg_A* 2el1_A* ...
Probab=99.97 E-value=3.4e-31 Score=239.05 Aligned_cols=185 Identities=17% Similarity=0.178 Sum_probs=141.6
Q ss_pred eEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCC---C--CHHHHhhccCCCcEEecCCCCHHHHHHHHH-HHHhCCCe
Q 024054 82 GLYLVATPIGNLEDITLRALRVLKSANVILSEDTR---H--SGKLLQYYNIKTPLLSYHKFNESQREQTVL-NRLKQGEI 155 (273)
Q Consensus 82 ~l~iVGvGPGdpdlLTlrA~~~L~~ADvV~~~~~~---~--~~~ll~~~~~~~~~i~~~~~~~~~~~~~ii-~~l~~G~~ 155 (273)
+||+||+|||||++||+||+++|++||+|++++.. . +.++++.+. +++++..+..+.++..+.++ +.++ |++
T Consensus 2 ~l~iVG~GpG~~~~LT~~A~~~L~~advv~~~~~~~~l~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~-g~~ 79 (265)
T 2z6r_A 2 VLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQRLI-GKEIRVLSREDVELNFENIVLPLAK-END 79 (265)
T ss_dssp CEEEEECBSSSGGGSBHHHHHHHHHCSEEEEECSSCCCTTCCHHHHHHHH-TSCCEEECHHHHHHHHHHHTHHHHT-TSC
T ss_pred EEEEEccCCCChHhcCHHHHHHHHhCCEEEEeccccccccCCHHHHHhcc-CCcEEEcCcccHHHHHHHHHHHHhC-CCc
Confidence 59999999999999999999999999999987432 1 467777663 55555443223456667777 7766 799
Q ss_pred EEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCccE---EEEEEeCCCCcc--hHHHHHhhhC
Q 024054 156 VALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEF---TFVGFLPKHARS--RTERLMLSAN 230 (273)
Q Consensus 156 Vv~LS~~GDP~iys~~~~l~~~l~~~gi~vevIPGISS~~aAaA~lG~pl~~~---~~ig~lp~~~~~--r~~~L~~l~~ 230 (273)
|+++ .+|||++||++.++++.+.+.|+++++||||||+++| |++|+||+++ ..+.+.+.|++. ..+.+...++
T Consensus 80 V~~l-~~GDP~i~~~~~~l~~~l~~~gi~veviPGiSs~~aa-a~~g~pl~~~~~~~~v~~~s~~~~~~~~~~~l~~~~~ 157 (265)
T 2z6r_A 80 VAFL-TPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAV-GITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAE 157 (265)
T ss_dssp EEEE-ESBCTTSSSSTHHHHHHHHHTTCCEEEECCCCHHHHG-GGGTCCGGGBCCCEEECCCBTTBCCCHHHHHHHHHHH
T ss_pred EEEE-ECCCCcCCCCHHHHHHHHHHCCCcEEEECChhHHHHH-HHhCCCccCCCccEEEEEecCCcCCCchHHHHHHHHh
Confidence 9999 5999999999999999999999999999999999999 9999999864 122223456542 1245666655
Q ss_pred CC-CeEEE---------EeCcc----cHHHHHHHHhh-hcCCCcEEEeEehhhhh
Q 024054 231 EV-KTQIF---------YVPPH----KLLQFLEETSL-LFGYSRYIRYLKILFLF 270 (273)
Q Consensus 231 ~~-~tlVl---------~~~~~----~l~~i~~~L~e-~~~~d~~v~v~~~l~~~ 270 (273)
.+ .|+|+ |++++ ++.++++.+.. ++++++++++++++|.-
T Consensus 158 ~~~~tlvl~d~~~~~~~y~~~~~~~~~l~~~~~~l~~~~~~~~~~v~v~~~l~~~ 212 (265)
T 2z6r_A 158 RGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSL 212 (265)
T ss_dssp TTCBEEEEECEEGGGTEECCHHHHHHHHHHHHHHHCCSSSCTTCEEEEEESTTSS
T ss_pred CCCceEEEEecccccccccCHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeCCCC
Confidence 55 89999 78877 44454545443 57779999999999853
No 18
>3i4t_A Diphthine synthase; niaid, ssgcid, infectious disease, anaerobic parasitic protozoan, structural genomics, decode, UW, SBRI; 2.49A {Entamoeba histolytica}
Probab=99.97 E-value=7e-32 Score=248.18 Aligned_cols=187 Identities=21% Similarity=0.262 Sum_probs=146.1
Q ss_pred CCeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCC----CCHHHHhhccCCCcEEecCCCCHHHHHHHHHHHHhCCCe
Q 024054 80 EPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTR----HSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEI 155 (273)
Q Consensus 80 ~g~l~iVGvGPGdpdlLTlrA~~~L~~ADvV~~~~~~----~~~~ll~~~~~~~~~i~~~~~~~~~~~~~ii~~l~~G~~ 155 (273)
.|+||+||+|||||++||+||+++|++||+|++++.+ .+.++++.+ .+++++..++.++++..+.+++.+++ ++
T Consensus 20 ~~~l~lVG~GpGd~~~LT~rA~~~L~~ADvV~~e~~~s~~~~~~~~L~~~-~~~~~i~~~~~~~~~~~~~i~~~a~~-~~ 97 (292)
T 3i4t_A 20 GSMLYIIGLGLYDEKDITVRGLEAVKSCDLVFLEHYTAILQCDVAKLEEF-YGKKVIIGDRDLVETEADQILEPAKT-KN 97 (292)
T ss_dssp CCEEEEEECBSSSGGGSCHHHHHHHHHCSEEEECGGGGGSSSCHHHHHHH-HTSCCEEC-------CCCTTHHHHTT-SE
T ss_pred CCEEEEEEECCCChHHhhHHHHHHHHhCCEEEEecccccccCCHHHHHhC-CCCeEEEcccccHHHHHHHHHHHhcC-CC
Confidence 5899999999999999999999999999999997543 567888877 45666655555555556677888877 99
Q ss_pred EEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCccE---EEEEEeCCCCcc---hHHHHHhhh
Q 024054 156 VALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEF---TFVGFLPKHARS---RTERLMLSA 229 (273)
Q Consensus 156 Vv~LS~~GDP~iys~~~~l~~~l~~~gi~vevIPGISS~~aAaA~lG~pl~~~---~~ig~lp~~~~~---r~~~L~~l~ 229 (273)
|++++ +|||++||++.++++.+.+.|+++++||||||++ |+|++|+||+.+ .-+.|++.|++. .+..+++++
T Consensus 98 Vv~L~-~GDP~i~g~g~~l~~~l~~~gi~veviPGiSs~~-A~a~~G~pl~~~~~~~sv~~~t~~~~p~~~~~~~~~~l~ 175 (292)
T 3i4t_A 98 VALLV-VGDVYGATTHSDIFVRCQKMGIEVKVIHNASIMN-AIGCSGLQLYRFGQTVSVCFWSEHWRPSSYYPKIKINRD 175 (292)
T ss_dssp EEEEE-SBCHHHHCTTHHHHHHHHHHTCCEEEECCCCHHH-HGGGGSCCGGGBCCCEEECCCBTTBCCCTHHHHHHHHHH
T ss_pred EEEEe-cCCCCccccHHHHHHHHHHCCCcEEEECCHHHHH-HHHHhCCCcccCCceeEEEEEeCCCCCCccHHHHHHHhh
Confidence 99995 9999999999999999999999999999999998 569999999854 112234566543 234577888
Q ss_pred CCCCeEEE------------------------EeCccc-HHHHHH---HHhh-hcCCCcEEEeEehhhhh
Q 024054 230 NEVKTQIF------------------------YVPPHK-LLQFLE---ETSL-LFGYSRYIRYLKILFLF 270 (273)
Q Consensus 230 ~~~~tlVl------------------------~~~~~~-l~~i~~---~L~e-~~~~d~~v~v~~~l~~~ 270 (273)
+...|+|| |+++++ .+.+.+ .|.+ +++++++|+++++++.-
T Consensus 176 ~~~~Tlvl~d~~~~e~~~~~~~~~~~~y~p~r~m~~~~~~~~L~~~~~~l~~~g~~~dtpv~vv~~~t~~ 245 (292)
T 3i4t_A 176 NNMHTLVLLDIKVKERSEESIIKGRDIFEPPRYMTINQCIEQLLEVEKEQHLGVYDEDTMVVGMARVACA 245 (292)
T ss_dssp TTCBEEEEECEECCC-------------CCCEECCHHHHHHHHHHHHHHHCCCSCCTTCEEEEEESTTST
T ss_pred cCCCeEEEEeccccccchhhccccccccCCccccCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeecCCC
Confidence 88999999 788887 444555 5554 78889999999999854
No 19
>2npn_A Putative cobalamin synthesis related protein; COBF, PSI-2, MAD, struc genomics, SAM, S-adenosylmethionine, MCSG; HET: MSE SAM; 1.60A {Corynebacterium diphtheriae}
Probab=99.97 E-value=1.2e-30 Score=233.90 Aligned_cols=177 Identities=18% Similarity=0.226 Sum_probs=129.8
Q ss_pred CCeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCC--------HHHHhhccCCCcEEecCC--CC-----------
Q 024054 80 EPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHS--------GKLLQYYNIKTPLLSYHK--FN----------- 138 (273)
Q Consensus 80 ~g~l~iVGvGPGdpdlLTlrA~~~L~~ADvV~~~~~~~~--------~~ll~~~~~~~~~i~~~~--~~----------- 138 (273)
+|+||+||+|||||++||+||+++|++||+|++++++.. ..+++.+..+++++.++. .+
T Consensus 2 mg~l~vVG~GpGd~~lLTl~A~~~L~~Advv~~~~~~~~~~~l~~~~~~il~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 81 (251)
T 2npn_A 2 MRTIYVIGIGTGSPEFLTLQAISGLRHAQAIVALDKGEQKSDLLALRQKIVDTHAPGTPIYAVTDPERDRNPDNYEEEVR 81 (251)
T ss_dssp CEEEEEEECBSSCGGGCCHHHHHHHHHCSEEEEEC---CCHHHHHHHHHHHHHHSTTCCEEEECC----------CHHHH
T ss_pred CcEEEEEEeCCCChhHhhHHHHHHHHhCCEEEEeCCCCCchhhhhhHHHHHHHHhCCCEEEEecCCCcccchhhhhhhhh
Confidence 379999999999999999999999999999999865543 335565544566655432 10
Q ss_pred -----HHHHH-HHHHHHHhCCCeEEEEccCCCCCCCchHHHHHHHhhhCC---CCEEEEccchHHHHHHHhCCCCCccE-
Q 024054 139 -----ESQRE-QTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEK---IPVVPIPGASAFVAALSASGLATDEF- 208 (273)
Q Consensus 139 -----~~~~~-~~ii~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~g---i~vevIPGISS~~aAaA~lG~pl~~~- 208 (273)
.++.. +.|.+.+++|++|++++ +|||++||++.++++.+.+.| ++++|||||||+++|+|++|+||+++
T Consensus 82 ~~~~~~~~~~~~~i~~~~~~g~~Vv~l~-~GDP~iy~~~~~l~~~l~~~g~~~i~veviPGiSs~~aa~a~~g~pl~~~~ 160 (251)
T 2npn_A 82 RWHAERAHLLASTIRERTPDDGAVAFLV-WGDPSLYDSTLRIIEHMRNLEDLHADVKVIPGITAVQVLTAEHGILINRIG 160 (251)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCEEEEEE-SBCTTSSCCHHHHHHHHHHHHTCCEEEEEECCCCHHHHHHHHHTCCSSCTT
T ss_pred hhhhhHHHHHHHHHHHHHHCCCeEEEEe-CCCcccccCHHHHHHHHHhcCCCCCcEEEeCChhHHHHHHHHcCCCcCCCC
Confidence 11122 35556677899999995 999999999999999998877 99999999999999999999999974
Q ss_pred EEEEEeCCCCcchHHHHH-hhhCCCCeEEEEeCccc-HHHHHHHHhhhcCCCcEEEeEehhhhh
Q 024054 209 TFVGFLPKHARSRTERLM-LSANEVKTQIFYVPPHK-LLQFLEETSLLFGYSRYIRYLKILFLF 270 (273)
Q Consensus 209 ~~ig~lp~~~~~r~~~L~-~l~~~~~tlVl~~~~~~-l~~i~~~L~e~~~~d~~v~v~~~l~~~ 270 (273)
..+.+++.+. ++ .+.....|+|+|..+++ +.++ . ++++++++++|+|.-
T Consensus 161 ~~~~~~~g~~------l~~~l~~~~~t~vvl~~~~~~~~~l----~---~~~~~v~v~~~l~~~ 211 (251)
T 2npn_A 161 EAIHITTGRN------LPETSAKDRRNCVVMLDGKTAWQDV----A---TEHTYMWWGAFLGTE 211 (251)
T ss_dssp CCCEEEETTT------GGGSCTTGGGEEEEESCSSCTHHHH----C---CTTEEEEEEESTTST
T ss_pred CeEEEEccch------hhHHHHhcCCcEEEEEcchhhHHHh----c---CCCCEEEEEEECCCC
Confidence 1122234331 12 23344578888776665 4332 2 457999999999853
No 20
>1wde_A Probable diphthine synthase; structural genomics, conserved hypothetical protein, riken S genomics/proteomics initiative, RSGI, transferase; 2.00A {Aeropyrum pernix} SCOP: c.90.1.1
Probab=99.96 E-value=1.2e-29 Score=232.79 Aligned_cols=186 Identities=20% Similarity=0.117 Sum_probs=140.0
Q ss_pred CeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCC---CH---HHHhhccCCCcEEecCCCCHHHHHHHHHHHHhCCC
Q 024054 81 PGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRH---SG---KLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGE 154 (273)
Q Consensus 81 g~l~iVGvGPGdpdlLTlrA~~~L~~ADvV~~~~~~~---~~---~ll~~~~~~~~~i~~~~~~~~~~~~~ii~~l~~G~ 154 (273)
++||+||+| |||++||+||+++|++||+|++++... +. .+++.+.. ++++..+..+.++..+.+++.++ |+
T Consensus 8 ~~l~lVG~G-Gd~~lLTl~A~~~L~~ADvV~~~~~~~~~~s~~~~~~~~~~~~-~~~~~~~~~~~e~~~~~i~~~~~-g~ 84 (294)
T 1wde_A 8 VTLLLVGWG-YAPGMQTLEALDAVRRADVVYVESYTMPGSSWLYKSVVEAAGE-ARVVEASRRDLEERSREIVSRAL-DA 84 (294)
T ss_dssp CEEEEEECB-SSTTCCCHHHHHHHHHCSEEEEECSSSTTCHHHHHHHHHHHTS-SSEEECCHHHHHTSHHHHTCCSS-CC
T ss_pred eEEEEEECC-CChHHhhHHHHHHHHhCCEEEEecccccccccchHHHHHhccC-CeEEecChHHHHHHHHHHHHHhC-CC
Confidence 479999999 999999999999999999999975431 11 24444544 56654432223444566666666 99
Q ss_pred eEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCccEEEEEEeCCCC---c--chHHHHHh-h
Q 024054 155 IVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHA---R--SRTERLML-S 228 (273)
Q Consensus 155 ~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~vevIPGISS~~aAaA~lG~pl~~~~~ig~lp~~~---~--~r~~~L~~-l 228 (273)
+|+++ .+|||++||++.++++.+.+.|+++++||||||+++|+|++|+||+++...-.++.++ . ...+.+.. +
T Consensus 85 ~Vv~L-~~GDP~v~g~~~~l~~~l~~~gi~veviPGiSs~~aa~a~~Gipl~~~~~~~~v~~~~~~~~p~~~~~~l~~~l 163 (294)
T 1wde_A 85 VVAVV-TAGDPMVATTHSSLAAEALEAGVAVRYIPGVSGVQAARGATMLSFYRFGGTVTLPGPWRGVTPISVARRIYLNL 163 (294)
T ss_dssp EEEEE-ESBCTTSSSSHHHHHHHHHHTTCEEEEECCCCHHHHHHHHHTCCGGGEEEEEEECCGGGCCCCHHHHHHHHHHH
T ss_pred CEEEE-eCCCCccccCHHHHHHHHHHCCCCEEEECCHhHHHHHHHHhCCCccCCCceEEEEeccCcccCCChHHHHHHHH
Confidence 99999 5999999999999999999999999999999999999999999999752211112221 1 01233443 4
Q ss_pred hCCCCeEEEEeCccc-----HHHHHHHHh---hh----------cCCCcEEEeEehhhhh
Q 024054 229 ANEVKTQIFYVPPHK-----LLQFLEETS---LL----------FGYSRYIRYLKILFLF 270 (273)
Q Consensus 229 ~~~~~tlVl~~~~~~-----l~~i~~~L~---e~----------~~~d~~v~v~~~l~~~ 270 (273)
.....|+|||+..++ +.++.+.|. +. +++++++++++++|.-
T Consensus 164 ~~~~~tlvl~~~~~~~~~m~~~~i~~~L~~l~~~l~~~~~~~G~~~~~~~v~v~~~lg~~ 223 (294)
T 1wde_A 164 CAGLHTTALLDVDERGVQLSPGQGVSLLLEADREYAREAGAPALLARLPSVLVEAGAGGG 223 (294)
T ss_dssp HHTCEEEEEECBCTTSCBCCHHHHHHHHHHHHHHHHHHHTSCCCGGGSCEEEEECCGGGC
T ss_pred hcCCCeEEEEecccccccccHHHHHHHHHHHHHhhhccccccCcCCCCCEEEEEEeCCCC
Confidence 445689999999888 888888887 53 3668999999999863
No 21
>2bb3_A Cobalamin biosynthesis precorrin-6Y methylase (CB; beta, alpha-beta-alpha sandwich, structural genomics, PSI, P structure initiative; HET: SAH; 2.27A {Archaeoglobus fulgidus} SCOP: c.90.1.1
Probab=99.95 E-value=1.2e-27 Score=211.27 Aligned_cols=171 Identities=19% Similarity=0.194 Sum_probs=119.2
Q ss_pred CCCeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhccCCCcEEecCCCCHHHHHHHHHHHHhCCCeEEE
Q 024054 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVAL 158 (273)
Q Consensus 79 ~~g~l~iVGvGPGdpdlLTlrA~~~L~~ADvV~~~~~~~~~~ll~~~~~~~~~i~~~~~~~~~~~~~ii~~l~~G~~Vv~ 158 (273)
..|+||+||+||| |++||+||+++|++||+|+++ ++. .++++.+. ..+...+... .++.++.+. .+++|++|++
T Consensus 20 ~~g~l~lVG~GpG-p~lLTlrA~~~L~~AdvI~~~-~~~-l~~~~~~~-~~~~~~~~~~-~~~~~~~i~-~~~~g~~Vv~ 93 (221)
T 2bb3_A 20 SGHMIWIVGSGTC-RGQTTERAKEIIERAEVIYGS-RRA-LELAGVVD-DSRARILRSF-KGDEIRRIM-EEGREREVAV 93 (221)
T ss_dssp CCSEEEEEECBSS-TTCCCHHHHHHHHHCSEEEEC-HHH-HHHTTCTT-CTTEEECSCC-SHHHHHHHH-HHHHHSCEEE
T ss_pred CCCEEEEEEeCCC-hhHhHHHHHHHHHhCCEEEEC-HHH-HHHhhhhc-CCceEeccch-HHHHHHHHH-HhcCCCcEEE
Confidence 3589999999999 999999999999999999994 322 22333221 1222223322 234455664 5667899999
Q ss_pred EccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCccEEEEEEeCCCCcchHHHHHhhhCCCCeEEEE
Q 024054 159 ISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFY 238 (273)
Q Consensus 159 LS~~GDP~iys~~~~l~~~l~~~gi~vevIPGISS~~aAaA~lG~pl~~~~~ig~lp~~~~~r~~~L~~l~~~~~tlVl~ 238 (273)
++ .|||++|+.+..+.+ + ..++++++||||||+++|+|++|+||+++.++ +.|++...+.++.+.+...+++++
T Consensus 94 L~-~GDP~i~~~~~~l~~-~-~~~i~veviPGiSS~~aa~a~~g~pl~~~~~v---s~~~r~~~~~l~~l~~~~~~vvl~ 167 (221)
T 2bb3_A 94 IS-TGDPMVAGLGRVLRE-I-AEDVEIKIEPAISSVQVALARLKVDLSEVAVV---DCHAKDFDAELTELLKYRHLLILA 167 (221)
T ss_dssp EE-SBCTTTTTSHHHHHT-S-CCSSEEEEECCCCHHHHHHHHHTCCGGGEEEE---EC----CCHHHHTHHHHCEEEEEE
T ss_pred Ee-CCCCccccCHHHHHH-h-cCCCCEEEECCHHHHHHHHHHhCCCceeEEEE---eecCCCchHHHHHHhcCCeEEEEE
Confidence 95 899999998877544 3 35899999999999999999999999998887 556443234566666555455555
Q ss_pred eCcccHHHHHHHHhhhcCCCcEEEeEehhhhh
Q 024054 239 VPPHKLLQFLEETSLLFGYSRYIRYLKILFLF 270 (273)
Q Consensus 239 ~~~~~l~~i~~~L~e~~~~d~~v~v~~~l~~~ 270 (273)
...+...++ .+ +++++++++|.-
T Consensus 168 ~~~~~~~~l----~~-----~~v~v~~~lg~~ 190 (221)
T 2bb3_A 168 DSHFPLERL----GK-----RRVVLLENLCME 190 (221)
T ss_dssp CTTCCCGGG----TT-----CEEEEEESTTST
T ss_pred CCCCCHHHH----hC-----CeeehhhhcCCC
Confidence 544444222 21 899999998853
No 22
>3hh1_A Tetrapyrrole methylase family protein; chlorobium tepidum, structural genom 2, protein structure initiative; 1.85A {Chlorobaculum tepidum}
Probab=99.95 E-value=1.2e-27 Score=191.63 Aligned_cols=115 Identities=47% Similarity=0.792 Sum_probs=101.6
Q ss_pred CCCCCeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhccCC-CcEEecCCCCHHHHHHHHHHHHhCCCe
Q 024054 77 GPLEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIK-TPLLSYHKFNESQREQTVLNRLKQGEI 155 (273)
Q Consensus 77 ~~~~g~l~iVGvGPGdpdlLTlrA~~~L~~ADvV~~~~~~~~~~ll~~~~~~-~~~i~~~~~~~~~~~~~ii~~l~~G~~ 155 (273)
+.++|+||+||+|||||++||+||+++|++||+|++++++.+.++++.+... ++++.+++.++++..+.+++.+++|++
T Consensus 2 ~~~~g~ly~VG~GpGd~~~lT~~a~~~L~~advv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~G~~ 81 (117)
T 3hh1_A 2 NAHKGTLYVVATPLGNLDDMTFRAVNTLRNAGAIACEDTRRTSILLKHFGIEGKRLVSYHSFNEERAVRQVIELLEEGSD 81 (117)
T ss_dssp -CCCCCEEEEEECSSCGGGSCHHHHHHHHHCSEEEESCHHHHHHHHHHTTCCSCCEEECCSTTHHHHHHHHHHHHHTTCC
T ss_pred CCCCceEEEEeCCCCCHHHhhHHHHHHHHhCCEEEEecCchHHHHHHHhCCCCCEEeccCCccHHHHHHHHHHHHHCCCe
Confidence 3457999999999999999999999999999999998766666788877544 778888888888889999999999999
Q ss_pred EEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccc
Q 024054 156 VALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGA 191 (273)
Q Consensus 156 Vv~LS~~GDP~iys~~~~l~~~l~~~gi~vevIPGI 191 (273)
|+++||+|||++|+++.++++++++.|++++++||+
T Consensus 82 V~~l~d~GdP~i~~~~~~l~~~~~~~gi~v~viPGp 117 (117)
T 3hh1_A 82 VALVTDAGTPAISDPGYTMASAAHAAGLPVVPVPGA 117 (117)
T ss_dssp EEEEEETTSCGGGSTTHHHHHHHHHTTCCEEEEC--
T ss_pred EEEEecCCcCeEeccHHHHHHHHHHCCCcEEEeCCC
Confidence 999976899999999999999999999999999996
No 23
>3ffy_A Putative tetrapyrrole (corrin/porphyrin) methylas; structural genomics, APC62130.1, methyltransferase, PSI-2, P structure initiative; 2.00A {Bacteroides fragilis} PDB: 3fq6_A
Probab=99.55 E-value=1.3e-14 Score=115.82 Aligned_cols=80 Identities=38% Similarity=0.618 Sum_probs=74.1
Q ss_pred ccchHHHHHHHhCCCCCccEEEEEEeCCCCcchHHHHHhhhCCCCeEEEEeCcccHHHHHHHHhhhcCCCcEEEeEehhh
Q 024054 189 PGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRYIRYLKILF 268 (273)
Q Consensus 189 PGISS~~aAaA~lG~pl~~~~~ig~lp~~~~~r~~~L~~l~~~~~tlVl~~~~~~l~~i~~~L~e~~~~d~~v~v~~~l~ 268 (273)
||+||+.+|++.+|+|.+.|.|.||+|.+. .|.+.|+.+++.+.|+|||++++++.++++.|.+.+++++++++|++++
T Consensus 1 PG~sA~~~Al~~sGlp~~~F~F~Gflp~~~-~r~~~l~~la~~~~TlVfyesp~Rl~~~l~~L~~~~g~~~~v~v~relT 79 (115)
T 3ffy_A 1 SNATAFVPALVASGLPNEKFCFEGFLPQKK-GRMTKLKSLVDEHRTMVFYESPHRLLKTLTQFAEYFGPERQVSVSREIS 79 (115)
T ss_dssp -CTTTHHHHHHHTTSCCSSEEEEESCCSST-THHHHHHHTTTCCSEEEEEECTTTHHHHHHHHHHHHCTTCEEEEEEESS
T ss_pred CchhHHHHHHHHcCCCCCcEEEEeeCCCCc-cHHHHHHHHhCCCCeEEEEechHHHHHHHHHHHHhcCCCCEEEeeeccC
Confidence 899999999999999999999999999765 4778899999999999999999999999999999888899999999997
Q ss_pred h
Q 024054 269 L 269 (273)
Q Consensus 269 ~ 269 (273)
-
T Consensus 80 k 80 (115)
T 3ffy_A 80 K 80 (115)
T ss_dssp S
T ss_pred C
Confidence 4
No 24
>3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi}
Probab=68.10 E-value=30 Score=27.58 Aligned_cols=91 Identities=10% Similarity=0.115 Sum_probs=46.3
Q ss_pred CeEEEEecCCCCcc----chHHHHHHHHhhCCEEEEcCCCC----CHHHHhhccCCCcEEecCCCCHHHHHHHHHHHHhC
Q 024054 81 PGLYLVATPIGNLE----DITLRALRVLKSANVILSEDTRH----SGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQ 152 (273)
Q Consensus 81 g~l~iVGvGPGdpd----lLTlrA~~~L~~ADvV~~~~~~~----~~~ll~~~~~~~~~i~~~~~~~~~~~~~ii~~l~~ 152 (273)
+++.+| .|||.-. .+-..-.++++.+|.|+..+.+. ...+.+.+. .+...+. +.++.++.+.+.++.
T Consensus 64 ~riivv-f~~g~~s~r~k~~~~~~~~~~~~aD~vi~~~~~~~~~~~~~~~~~~~--~~~~~~~--d~~eai~~~~~~~~~ 138 (163)
T 3mvn_A 64 QRILAV-LEPRSNTMKMGVHKHELATSLQDADSVFIYQPPTIEWQVSEVLANLA--QPAISAD--DVDELVMRIVQQAKP 138 (163)
T ss_dssp SCEEEE-ECCC---------CHHHHHHHTTCSEEEEECC----CCHHHHHTTCC--SCEEEES--SHHHHHHHHHHHCCT
T ss_pred CcEEEE-ECCCCcchhhHHHHHHHHHHHhcCCEEEEECCCCcccCHHHHHhhCC--CCeEEEC--CHHHHHHHHHHhCCC
Confidence 466666 3665321 12223334677899887754321 012222222 2332232 455667777777777
Q ss_pred CCeEEEEccCCCCCCCchHHHHHHHhh
Q 024054 153 GEIVALISDAGTPGISDPGTELAKLCV 179 (273)
Q Consensus 153 G~~Vv~LS~~GDP~iys~~~~l~~~l~ 179 (273)
|..|.+. =+|+ ++..+..+++.+.
T Consensus 139 gDvVLv~-Gsg~--~~~~~~~l~~~l~ 162 (163)
T 3mvn_A 139 NDHILIM-SNGA--FGGIHQKLLTALA 162 (163)
T ss_dssp TCEEEEE-CSSC--GGGHHHHHHHHTC
T ss_pred CCEEEEE-CCCC--HHHHHHHHHHHHh
Confidence 7544444 2454 7777777777653
No 25
>3gdw_A Sigma-54 interaction domain protein; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=65.28 E-value=9.7 Score=30.32 Aligned_cols=55 Identities=16% Similarity=0.156 Sum_probs=33.7
Q ss_pred CHHHHHHHHHHHHh-----CCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHH
Q 024054 138 NESQREQTVLNRLK-----QGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAA 197 (273)
Q Consensus 138 ~~~~~~~~ii~~l~-----~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~vevIPGISS~~aA 197 (273)
+.++..+++.+.++ .|+-|.+++|-|.|.-. ...+.+. .+.+++++.|++-..+.
T Consensus 43 ~~~~~~~~i~~~i~~~~~d~g~GVLiL~DmGSp~n~--a~~l~~~---~~~~v~vI~gvnlpmll 102 (139)
T 3gdw_A 43 EVQTMYEQLRNQVITQKESLNNGILLLTDMGSLNSF--GNMLFEE---TGIRTKAITMTSTMIVL 102 (139)
T ss_dssp CHHHHHHHHHHHHHTSTGGGTTCEEEEECSGGGGGH--HHHHHHH---HCCCEEEECSCCHHHHH
T ss_pred CHHHHHHHHHHHHHhhcCCCCCCEEEEEeCCCHHHH--HHHHHHh---hCCCEEEEeCCCHHHHH
Confidence 44555555555443 47778888898877433 2233222 25789999999865544
No 26
>3gx1_A LIN1832 protein; APC63308.2, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Listeria innocua CLIP11262}
Probab=63.70 E-value=5.2 Score=31.50 Aligned_cols=55 Identities=16% Similarity=0.078 Sum_probs=34.2
Q ss_pred CHHHHHHHHHHHH---hCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHH
Q 024054 138 NESQREQTVLNRL---KQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAA 197 (273)
Q Consensus 138 ~~~~~~~~ii~~l---~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~vevIPGISS~~aA 197 (273)
+.++..+++.+.+ .+|+-|.+++|-|.|.-. ...+.+. .+.++++|.|++-..+.
T Consensus 43 ~~~~~~~~i~~~i~~~d~~~GVLiL~DmGSp~n~--a~~l~~~---~~~~v~vI~gvnlpmll 100 (130)
T 3gx1_A 43 EVKAMYEKLKQTVVKLNPVKGVLILSDMGSLTSF--GNILTEE---LGIRTKTVTMVSTPVVL 100 (130)
T ss_dssp CHHHHHHHHHHHHHTSCCTTCEEEEECSGGGGTH--HHHHHHH---HCCCEEEECSCCHHHHH
T ss_pred CHHHHHHHHHHHHHhhCCCCCEEEEEeCCCHHHH--HHHHHHh---cCCCEEEEeCCCHHHHH
Confidence 3445555554444 457778888898877443 2333322 25689999999865544
No 27
>2o8r_A Polyphosphate kinase; structural genomics, protein structure initiative, PSI, nysgrc, NEW YORK structural genomics research consortium; HET: MSE; 2.70A {Porphyromonas gingivalis} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4
Probab=63.53 E-value=13 Score=37.51 Aligned_cols=90 Identities=8% Similarity=0.053 Sum_probs=54.6
Q ss_pred HHHHHhhCCEEEEcCCCCCHHHHhhcc---CCCcEEe-----cCCCCHHHHHHHHHHHHhCCCeEEEEccCCCCCCCchH
Q 024054 100 ALRVLKSANVILSEDTRHSGKLLQYYN---IKTPLLS-----YHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPG 171 (273)
Q Consensus 100 A~~~L~~ADvV~~~~~~~~~~ll~~~~---~~~~~i~-----~~~~~~~~~~~~ii~~l~~G~~Vv~LS~~GDP~iys~~ 171 (273)
--++|++=|+++...--.-+.+++.+. .+..+.. |--.+...+++.+++++++|+.|-++.|.|-......-
T Consensus 336 iF~~I~~~DiLl~~p~~sf~~vi~~I~~A~~DP~V~sIk~tlYr~~~ds~Iv~ALi~AA~rGv~V~vLvel~arfdee~n 415 (705)
T 2o8r_A 336 LMEGIRRKDYLIHVPYYTYDYVVRLLMEAAISPDVSEIRLTQYRVAENSSIISALEAAAQSGKKVSVFVELKARFDEENN 415 (705)
T ss_dssp HHHHHHHCCEEEEETTBCSHHHHHHHHHHHTCTTEEEEEEEESCCCSCCHHHHHHHHHHHTTCEEEEEECCCSCC----C
T ss_pred HHHHHhhCCeEeeChhHhHHHHHHHHHHhccCCCceEEEEEEEEEcCCHHHHHHHHHHHHCCCEEEEEEeCCCCcchhhh
Confidence 578999999999864322334444332 2222221 21112367889999999999999988776643332223
Q ss_pred HHHHHHhhhCCCCEEEEccc
Q 024054 172 TELAKLCVDEKIPVVPIPGA 191 (273)
Q Consensus 172 ~~l~~~l~~~gi~vevIPGI 191 (273)
....+.+.+.|++ |+.|.
T Consensus 416 i~wa~~Le~aGv~--Vv~g~ 433 (705)
T 2o8r_A 416 LRLSERMRRSGIR--IVYSM 433 (705)
T ss_dssp HHHHHHHHHHTCE--EEECC
T ss_pred HHHHHHHHHCCCE--EEEcc
Confidence 4456778888864 56664
No 28
>2fpr_A Histidine biosynthesis bifunctional protein HISB; histidinola phosphate phosphatase, bifunctional enzyme structural genomics; 1.70A {Escherichia coli} SCOP: c.108.1.19 PDB: 2fps_A 2fpu_A* 2fpx_A 2fpw_A*
Probab=62.58 E-value=27 Score=27.78 Aligned_cols=93 Identities=13% Similarity=0.153 Sum_probs=50.3
Q ss_pred hCCCeEEEEccCCCCCCCc---------hHHHHHHHhhhCCCCEEEE---------------ccchHHHHHHHhCCCCCc
Q 024054 151 KQGEIVALISDAGTPGISD---------PGTELAKLCVDEKIPVVPI---------------PGASAFVAALSASGLATD 206 (273)
Q Consensus 151 ~~G~~Vv~LS~~GDP~iys---------~~~~l~~~l~~~gi~vevI---------------PGISS~~aAaA~lG~pl~ 206 (273)
++|.+++++| .+.....+ ....+...+...|+.++.+ |-+-.+..++..+|++.+
T Consensus 56 ~~G~~l~i~T-n~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~fd~v~~s~~~~~~~~~~~KP~p~~~~~~~~~~gi~~~ 134 (176)
T 2fpr_A 56 KAGYKLVMIT-NQDGLGTQSFPQADFDGPHNLMMQIFTSQGVQFDEVLICPHLPADECDCRKPKVKLVERYLAEQAMDRA 134 (176)
T ss_dssp HTTEEEEEEE-ECTTTTBTTBCHHHHHHHHHHHHHHHHHTTCCEEEEEEECCCGGGCCSSSTTSCGGGGGGC----CCGG
T ss_pred HCCCEEEEEE-CCccccccccchHhhhhhHHHHHHHHHHcCCCeeEEEEcCCCCcccccccCCCHHHHHHHHHHcCCCHH
Confidence 5688999996 44322222 2233344455567665332 335567778888898888
Q ss_pred cEEEEEEeCCCCcchHHHHHhhhCCCCeEEEEeCcc-cHHHHHHHH
Q 024054 207 EFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPH-KLLQFLEET 251 (273)
Q Consensus 207 ~~~~ig~lp~~~~~r~~~L~~l~~~~~tlVl~~~~~-~l~~i~~~L 251 (273)
+..++| +...++....+.+-..+.+.... ..+++.+.|
T Consensus 135 ~~l~VG-------D~~~Di~~A~~aG~~~i~v~~~~~~~~~~~~~l 173 (176)
T 2fpr_A 135 NSYVIG-------DRATDIQLAENMGINGLRYDRETLNWPMIGEQL 173 (176)
T ss_dssp GCEEEE-------SSHHHHHHHHHHTSEEEECBTTTBCHHHHHHHT
T ss_pred HEEEEc-------CCHHHHHHHHHcCCeEEEEcCCcccHHHHHHHH
Confidence 877774 12355655555555556665553 466655544
No 29
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=51.20 E-value=37 Score=26.01 Aligned_cols=50 Identities=10% Similarity=0.114 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEc
Q 024054 139 ESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIP 189 (273)
Q Consensus 139 ~~~~~~~ii~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~vevIP 189 (273)
.++..+.+.+++++|-+|-++. .+.+.........++.+.+.|+++...+
T Consensus 39 ~~~i~~aL~~a~~rGV~Vril~-~~~~~~~~~~~~~~~~L~~~gv~v~~~~ 88 (155)
T 1byr_A 39 APDIMKALVAAKKRGVDVKIVI-DERGNTGRASIAAMNYIANSGIPLRTDS 88 (155)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEE-ESTTCCSHHHHHHHHHHHHTTCCEEEEC
T ss_pred CHHHHHHHHHHHHCCCEEEEEE-eCccccccccHHHHHHHHHCCCeEEEcC
Confidence 3567778888888999988884 4444333344556677778899998874
No 30
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=46.81 E-value=1e+02 Score=24.22 Aligned_cols=92 Identities=12% Similarity=0.096 Sum_probs=51.7
Q ss_pred HHHHHHHHHhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEc-cchHHHHHHHhCCCCCccEEEEEEeCCCCcc
Q 024054 142 REQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIP-GASAFVAALSASGLATDEFTFVGFLPKHARS 220 (273)
Q Consensus 142 ~~~~ii~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~vevIP-GISS~~aAaA~lG~pl~~~~~ig~lp~~~~~ 220 (273)
..+.+.+.+.+.++|.++ =.|. -+..+.++...+...|.++..++ +.+.+...+.. +.-+|..++ +|..+..
T Consensus 28 ~l~~~~~~i~~a~~I~i~-G~G~--S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~--~~~~d~~i~--iS~sG~t 100 (187)
T 3sho_A 28 AIEAAVEAICRADHVIVV-GMGF--SAAVAVFLGHGLNSLGIRTTVLTEGGSTLTITLAN--LRPTDLMIG--VSVWRYL 100 (187)
T ss_dssp HHHHHHHHHHHCSEEEEE-CCGG--GHHHHHHHHHHHHHTTCCEEEECCCTHHHHHHHHT--CCTTEEEEE--ECCSSCC
T ss_pred HHHHHHHHHHhCCEEEEE-ecCc--hHHHHHHHHHHHHhcCCCEEEecCCchhHHHHHhc--CCCCCEEEE--EeCCCCC
Confidence 455666666666788777 3443 33345566667777899999999 45555544443 333465544 4655543
Q ss_pred hH--HHHHhhhCCCCeEEEEeC
Q 024054 221 RT--ERLMLSANEVKTQIFYVP 240 (273)
Q Consensus 221 r~--~~L~~l~~~~~tlVl~~~ 240 (273)
++ +.++.+.+.+-.++....
T Consensus 101 ~~~~~~~~~ak~~g~~vi~IT~ 122 (187)
T 3sho_A 101 RDTVAALAGAAERGVPTMALTD 122 (187)
T ss_dssp HHHHHHHHHHHHTTCCEEEEES
T ss_pred HHHHHHHHHHHHCCCCEEEEeC
Confidence 22 334444444444444443
No 31
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*
Probab=44.34 E-value=1.1e+02 Score=23.72 Aligned_cols=96 Identities=13% Similarity=0.039 Sum_probs=50.6
Q ss_pred CeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHH--------HhhccCCCcEEecCCCCHHHHHHHHHHHHhC
Q 024054 81 PGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKL--------LQYYNIKTPLLSYHKFNESQREQTVLNRLKQ 152 (273)
Q Consensus 81 g~l~iVGvGPGdpdlLTlrA~~~L~~ADvV~~~~~~~~~~l--------l~~~~~~~~~i~~~~~~~~~~~~~ii~~l~~ 152 (273)
.++-+||+++ +++.+--+-.+.|++...=+++-....+.+ ++.+.....+..+. ...+...+.+.+.++.
T Consensus 23 ~~iaVVGas~-~~g~~G~~~~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~~l~~~vDlvvi~-vp~~~~~~vv~~~~~~ 100 (144)
T 2d59_A 23 KKIALVGASP-KPERDANIVMKYLLEHGYDVYPVNPKYEEVLGRKCYPSVLDIPDKIEVVDLF-VKPKLTMEYVEQAIKK 100 (144)
T ss_dssp CEEEEETCCS-CTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGCSSCCSEEEEC-SCHHHHHHHHHHHHHH
T ss_pred CEEEEEccCC-CCCchHHHHHHHHHHCCCEEEEECCCCCeECCeeccCCHHHcCCCCCEEEEE-eCHHHHHHHHHHHHHc
Confidence 4799999996 677777666677777654344321111111 11111112221111 1233333334444556
Q ss_pred CCeEEEEccCCCCCCCchHHHHHHHhhhCCCC
Q 024054 153 GEIVALISDAGTPGISDPGTELAKLCVDEKIP 184 (273)
Q Consensus 153 G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~ 184 (273)
|-+.+++ ..|.. ..++.+.+++.|++
T Consensus 101 gi~~i~~-~~g~~-----~~~l~~~a~~~Gi~ 126 (144)
T 2d59_A 101 GAKVVWF-QYNTY-----NREASKKADEAGLI 126 (144)
T ss_dssp TCSEEEE-CTTCC-----CHHHHHHHHHTTCE
T ss_pred CCCEEEE-CCCch-----HHHHHHHHHHcCCE
Confidence 6666677 45542 46788888888865
No 32
>3ipr_A PTS system, IIA component; stranded parallel beta-sheet flanked by 3 alpha-helices on EACH SIDE, transferase; 2.50A {Enterococcus faecalis} SCOP: c.54.1.0
Probab=43.55 E-value=42 Score=26.66 Aligned_cols=50 Identities=20% Similarity=0.333 Sum_probs=28.8
Q ss_pred HHHHHHHhCCCeEEEEccCCCCCCCchHHHHHHHhhhC-----CCCEEEEccchHHHHH
Q 024054 144 QTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDE-----KIPVVPIPGASAFVAA 197 (273)
Q Consensus 144 ~~ii~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~-----gi~vevIPGISS~~aA 197 (273)
+..++.+.+|+.|.+++|. +.|+-......+... +.++++|.|++--.+.
T Consensus 49 ~~~i~~~~~~~gvlvLtDl----~GGSp~n~a~~~~~~~~~~~~~~v~vI~GvNLpmll 103 (150)
T 3ipr_A 49 KTAIENVQQGDGVLVMVDL----LSASPYNQAVLVINELEPALQKKIFVVSGTNLPMVL 103 (150)
T ss_dssp HHHHHHHCSSSCEEEEESS----TTSHHHHHHHHHHTTSCHHHHTTEEEEESCCHHHHH
T ss_pred HHHHHhcCCCCCEEEEEeC----CCCCHHHHHHHHHHhhhhccCCCEEEEeCCCHHHHH
Confidence 3344555567778888774 223323333333333 4679999999855444
No 33
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=43.38 E-value=78 Score=26.99 Aligned_cols=105 Identities=10% Similarity=0.092 Sum_probs=0.0
Q ss_pred CCccchHHHHHHHHhh--CCEEEEcCCCCCHHHHhhccCCCcEEecCCCCHHHHHHHHHHHHhCCCeEEEEccCCCCCCC
Q 024054 91 GNLEDITLRALRVLKS--ANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGIS 168 (273)
Q Consensus 91 GdpdlLTlrA~~~L~~--ADvV~~~~~~~~~~ll~~~~~~~~~i~~~~~~~~~~~~~ii~~l~~G~~Vv~LS~~GDP~iy 168 (273)
|+.+.-...|.+.+++ +|+|+. +.-+-.+++.. .+.+++.... +.-+..+.+..+-+.+++++++ |-+.+.
T Consensus 46 ~~le~av~~a~~~~~~~~~dVIIS--RGgta~~Lr~~-~~iPVV~I~v-s~~Dil~aL~~a~~~~~kIavV---g~~~~~ 118 (225)
T 2pju_A 46 LGFEKAVTYIRKKLANERCDAIIA--AGSNGAYLKSR-LSVPVILIKP-SGYDVLQFLAKAGKLTSSIGVV---TYQETI 118 (225)
T ss_dssp CCHHHHHHHHHHHTTTSCCSEEEE--EHHHHHHHHTT-CSSCEEEECC-CHHHHHHHHHHTTCTTSCEEEE---EESSCC
T ss_pred CcHHHHHHHHHHHHhcCCCeEEEe--CChHHHHHHhh-CCCCEEEecC-CHHHHHHHHHHHHhhCCcEEEE---eCchhh
Q ss_pred chH----------------------HHHHHHhhhCCCCEEEEccchHHHHHHHhCCCC
Q 024054 169 DPG----------------------TELAKLCVDEKIPVVPIPGASAFVAALSASGLA 204 (273)
Q Consensus 169 s~~----------------------~~l~~~l~~~gi~vevIPGISS~~aAaA~lG~p 204 (273)
... ...++.+.+.|+++ |=|-+...-.|.+.|++
T Consensus 119 ~~~~~i~~ll~~~i~~~~~~~~ee~~~~i~~l~~~G~~v--VVG~~~~~~~A~~~Gl~ 174 (225)
T 2pju_A 119 PALVAFQKTFNLRLDQRSYITEEDARGQINELKANGTEA--VVGAGLITDLAEEAGMT 174 (225)
T ss_dssp HHHHHHHHHHTCCEEEEEESSHHHHHHHHHHHHHTTCCE--EEESHHHHHHHHHTTSE
T ss_pred hHHHHHHHHhCCceEEEEeCCHHHHHHHHHHHHHCCCCE--EECCHHHHHHHHHcCCc
No 34
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=43.11 E-value=1.4e+02 Score=24.56 Aligned_cols=106 Identities=18% Similarity=0.216 Sum_probs=58.1
Q ss_pred CccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhccCCCcEEecCCCCHHHHHHHHHHHHhCCCeEEEEccCCCCCCC---
Q 024054 92 NLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGIS--- 168 (273)
Q Consensus 92 dpdlLTlrA~~~L~~ADvV~~~~~~~~~~ll~~~~~~~~~i~~~~~~~~~~~~~ii~~l~~G~~Vv~LS~~GDP~iy--- 168 (273)
+.+.-...|++.=+.+|+|+.-+ -+-.+++.. .+.|++.... +.-+..+.+..+-+.+++++++. .++..-.
T Consensus 37 ~l~~~v~~a~~~~~~~dVIISRG--gta~~lr~~-~~iPVV~I~~-s~~Dil~al~~a~~~~~kIavvg-~~~~~~~~~~ 111 (196)
T 2q5c_A 37 SLTRASKIAFGLQDEVDAIISRG--ATSDYIKKS-VSIPSISIKV-TRFDTMRAVYNAKRFGNELALIA-YKHSIVDKHE 111 (196)
T ss_dssp CHHHHHHHHHHHTTTCSEEEEEH--HHHHHHHTT-CSSCEEEECC-CHHHHHHHHHHHGGGCSEEEEEE-ESSCSSCHHH
T ss_pred CHHHHHHHHHHhcCCCeEEEECC--hHHHHHHHh-CCCCEEEEcC-CHhHHHHHHHHHHhhCCcEEEEe-CcchhhHHHH
Confidence 44544555555524688888843 223455543 3577776653 44556676666656678999994 4443211
Q ss_pred -----------------chHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCC
Q 024054 169 -----------------DPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLA 204 (273)
Q Consensus 169 -----------------s~~~~l~~~l~~~gi~vevIPGISS~~aAaA~lG~p 204 (273)
+-....++.+.+.|+++ +=|-+...-.|.+.|++
T Consensus 112 ~~~ll~~~i~~~~~~~~~e~~~~i~~l~~~G~~v--vVG~~~~~~~A~~~Gl~ 162 (196)
T 2q5c_A 112 IEAMLGVKIKEFLFSSEDEITTLISKVKTENIKI--VVSGKTVTDEAIKQGLY 162 (196)
T ss_dssp HHHHHTCEEEEEEECSGGGHHHHHHHHHHTTCCE--EEECHHHHHHHHHTTCE
T ss_pred HHHHhCCceEEEEeCCHHHHHHHHHHHHHCCCeE--EECCHHHHHHHHHcCCc
Confidence 01133455555566544 33444445556666664
No 35
>2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X*
Probab=41.59 E-value=1.4e+02 Score=26.10 Aligned_cols=109 Identities=11% Similarity=0.064 Sum_probs=63.2
Q ss_pred eEEEEecCCCCccchH--HHHHHHHhhC-CEEEEcCCCCCHHHHh-hccC--CCcEEe-cCCCCHHHHHHHHHHHH-hCC
Q 024054 82 GLYLVATPIGNLEDIT--LRALRVLKSA-NVILSEDTRHSGKLLQ-YYNI--KTPLLS-YHKFNESQREQTVLNRL-KQG 153 (273)
Q Consensus 82 ~l~iVGvGPGdpdlLT--lrA~~~L~~A-DvV~~~~~~~~~~ll~-~~~~--~~~~i~-~~~~~~~~~~~~ii~~l-~~G 153 (273)
.+.=||.+++..+.+- ...++.|++. |+.+.=|+..+ ++++ .+.. ++.++. .... . +..+.+.+.+ +.|
T Consensus 49 diIDIg~~s~~~eE~~rv~~vi~~l~~~~~~pisIDT~~~-~v~~aal~a~~Ga~iINdvs~~-~-d~~~~~~~~~a~~~ 125 (271)
T 2yci_X 49 HYLDVNTGPTADDPVRVMEWLVKTIQEVVDLPCCLDSTNP-DAIEAGLKVHRGHAMINSTSAD-Q-WKMDIFFPMAKKYE 125 (271)
T ss_dssp SEEEEECCSCSSCHHHHHHHHHHHHHHHCCCCEEEECSCH-HHHHHHHHHCCSCCEEEEECSC-H-HHHHHHHHHHHHHT
T ss_pred CEEEEcCCcCchhHHHHHHHHHHHHHHhCCCeEEEeCCCH-HHHHHHHHhCCCCCEEEECCCC-c-cccHHHHHHHHHcC
Confidence 5888888886554443 5667777765 87666666543 3333 2222 566663 3322 2 2223333333 336
Q ss_pred CeEEEEcc--CCCCCC----CchHHHHHHHhhhCCCC---EEEEccchH
Q 024054 154 EIVALISD--AGTPGI----SDPGTELAKLCVDEKIP---VVPIPGASA 193 (273)
Q Consensus 154 ~~Vv~LS~--~GDP~i----ys~~~~l~~~l~~~gi~---vevIPGISS 193 (273)
-.|++++- .|.|-- ..-..+.++.+.+.|++ +-+=||+..
T Consensus 126 ~~vv~m~~d~~G~p~t~~~~~~~l~~~~~~a~~~Gi~~~~IilDPg~gf 174 (271)
T 2yci_X 126 AAIIGLTMNEKGVPKDANDRSQLAMELVANADAHGIPMTELYIDPLILP 174 (271)
T ss_dssp CEEEEESCBTTBCCCSHHHHHHHHHHHHHHHHHTTCCGGGEEEECCCCC
T ss_pred CCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHCCCCcccEEEecCCCc
Confidence 67888752 566764 22345566777788986 888999764
No 36
>1pdo_A Mannose permease; phosphoenolpyruvate dependent phosphotransferase system, phosphotransferase; 1.70A {Escherichia coli} SCOP: c.54.1.1 PDB: 1vrc_A 1vsq_A* 2jzo_A 2jzn_A
Probab=41.16 E-value=40 Score=26.09 Aligned_cols=55 Identities=16% Similarity=0.052 Sum_probs=30.7
Q ss_pred CHHHHHHHHHHHHh---CCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHH
Q 024054 138 NESQREQTVLNRLK---QGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVA 196 (273)
Q Consensus 138 ~~~~~~~~ii~~l~---~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~vevIPGISS~~a 196 (273)
+.++..+++.+.++ +|+.|.+++|. +.|+-......+...+.+++++.|++--..
T Consensus 40 ~~~~~~~~i~~~i~~~~~~~gvliLtDl----~GGSp~n~a~~~~~~~~~v~vi~GvNlpml 97 (135)
T 1pdo_A 40 NAETLIEKYNAQLAKLDTTKGVLFLVDT----WGGSPFNAASRIVVDKEHYEVIAGVNIPML 97 (135)
T ss_dssp CHHHHHHHHHHHHTTSCCTTCEEEEESS----TTSHHHHHHHHHHTTCTTEEEEESCCHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCCEEEEEEC----CCCCHHHHHHHHHhccCCEEEEeCCCHHHH
Confidence 33445555555543 45678888774 223323333333333458999999986544
No 37
>3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii}
Probab=39.17 E-value=1.6e+02 Score=26.63 Aligned_cols=91 Identities=15% Similarity=0.154 Sum_probs=52.6
Q ss_pred HHHHHHhh-CCEEEEcCCCCCHHHHhhccCCCcEEe-cCCCCHHHHHHHHHHHHhCCCeEEEEccCCCCCCC--------
Q 024054 99 RALRVLKS-ANVILSEDTRHSGKLLQYYNIKTPLLS-YHKFNESQREQTVLNRLKQGEIVALISDAGTPGIS-------- 168 (273)
Q Consensus 99 rA~~~L~~-ADvV~~~~~~~~~~ll~~~~~~~~~i~-~~~~~~~~~~~~ii~~l~~G~~Vv~LS~~GDP~iy-------- 168 (273)
..++.|++ .|+.+.=|++.++.+-+.+..++.++. ....+.++..+.+.+ .|-.|+++...|+|--.
T Consensus 95 pvI~~l~~~~~vpISIDT~~~~Va~aAl~aGa~iINDVsg~~~~~m~~v~a~---~g~~vVlMh~~G~P~tmq~~~~ydv 171 (314)
T 3tr9_A 95 PVIDAIKKRFPQLISVDTSRPRVMREAVNTGADMINDQRALQLDDALTTVSA---LKTPVCLMHFPSETRKPGSTTHFYF 171 (314)
T ss_dssp HHHHHHHHHCCSEEEEECSCHHHHHHHHHHTCCEEEETTTTCSTTHHHHHHH---HTCCEEEECCCCTTCCTTSSCHHHH
T ss_pred HHHHHHHhhCCCeEEEeCCCHHHHHHHHHcCCCEEEECCCCCchHHHHHHHH---hCCeEEEECCCCCCcccccccccch
Confidence 45666655 488887777654333333333556653 222222333343322 35567777667888642
Q ss_pred -----chHHHHHHHhhhCCCC---EEEEccch
Q 024054 169 -----DPGTELAKLCVDEKIP---VVPIPGAS 192 (273)
Q Consensus 169 -----s~~~~l~~~l~~~gi~---vevIPGIS 192 (273)
.-..+.++.+.+.|++ +-+=||+.
T Consensus 172 v~ev~~~l~~~i~~a~~~GI~~~~IilDPG~G 203 (314)
T 3tr9_A 172 LQSVKKELQESIQRCKKAGISEDRIIIDPGFG 203 (314)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCGGGEEEECCCC
T ss_pred HHHHHHHHHHHHHHHHHcCCCHhHEEEeCCCC
Confidence 2234456677778984 88999986
No 38
>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}
Probab=33.60 E-value=1.5e+02 Score=22.95 Aligned_cols=26 Identities=15% Similarity=0.193 Sum_probs=17.6
Q ss_pred CeEEEEecCCCCccchHHHHHHHHhhC
Q 024054 81 PGLYLVATPIGNLEDITLRALRVLKSA 107 (273)
Q Consensus 81 g~l~iVGvGPGdpdlLTlrA~~~L~~A 107 (273)
.+|-+||+++ +|+.+--.-.+.|.+.
T Consensus 14 ~~IavIGas~-~~g~~G~~~~~~L~~~ 39 (145)
T 2duw_A 14 RTIALVGASD-KPDRPSYRVMKYLLDQ 39 (145)
T ss_dssp CCEEEESCCS-CTTSHHHHHHHHHHHH
T ss_pred CEEEEECcCC-CCCChHHHHHHHHHHC
Confidence 4699999987 5666665555555554
No 39
>3lfh_A Manxa, phosphotransferase system, mannose/fructose-speci component IIA; PTS; 1.80A {Thermoanaerobacter tengcongensis} SCOP: c.54.1.0
Probab=33.55 E-value=45 Score=26.40 Aligned_cols=53 Identities=9% Similarity=0.122 Sum_probs=29.6
Q ss_pred HHHHHHHH-hCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHh
Q 024054 143 EQTVLNRL-KQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSA 200 (273)
Q Consensus 143 ~~~ii~~l-~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~vevIPGISS~~aAaA~ 200 (273)
.+..++.+ .+|+.|.+++|. +.|+-......+.+ +.++++|.|++--...-+.
T Consensus 50 i~~~i~~~~~~~~gvliLtDl----~GGSp~n~a~~l~~-~~~v~vItGvNLpMlle~~ 103 (144)
T 3lfh_A 50 VEKIIKEKLQEDKEIIIVVDL----FGGSPFNIALSMMK-EYDVKVITGINMPMLVELL 103 (144)
T ss_dssp HHHHHHHHHTTTCEEEEEESS----SSSHHHHHHHHHHH-HHCCEEEESCCHHHHHHHH
T ss_pred HHHHHHHhhCCCCcEEEEEeC----CCCCHHHHHHHHhc-CCCEEEEeCCCHHHHHHHH
Confidence 33444555 667888888774 22222233222222 3468999999865554333
No 40
>3mtq_A Putative phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) permease...; PTS system fructose IIA component; 1.70A {Klebsiella pneumoniae subsp}
Probab=32.13 E-value=81 Score=25.48 Aligned_cols=55 Identities=9% Similarity=0.065 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHh
Q 024054 141 QREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSA 200 (273)
Q Consensus 141 ~~~~~ii~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~vevIPGISS~~aAaA~ 200 (273)
+..+..++.+.+|+.|.+++|. +.|+-......+.+ +.++++|.|++-..+.-+.
T Consensus 65 ~~~~~~i~~~~~~~gVLiLtDl----~GGSP~n~a~~~~~-~~~v~vItGvNLpMlle~~ 119 (159)
T 3mtq_A 65 QQVEALVARFPAQDELIVITDI----FAGSVNNEFVRFLS-RPHFHLLSGLNLPLIIDLL 119 (159)
T ss_dssp HHHHHHHHTSCTTSEEEEEESC----TTSHHHHHHHGGGG-STTEEEEECCCHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEEeC----CCCCHHHHHHHHhc-CCCeEEEeCCCHHHHHHHH
Confidence 3344444555567888888774 22222333333333 4689999999865554443
No 41
>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, hydrolase, magne metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A
Probab=32.06 E-value=1.8e+02 Score=22.65 Aligned_cols=90 Identities=16% Similarity=0.107 Sum_probs=54.1
Q ss_pred hCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCC--EE---EEcc--chHHHHHHHhCCCCCccEEEEEEeCCCCcchHH
Q 024054 151 KQGEIVALISDAGTPGISDPGTELAKLCVDEKIP--VV---PIPG--ASAFVAALSASGLATDEFTFVGFLPKHARSRTE 223 (273)
Q Consensus 151 ~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~--ve---vIPG--ISS~~aAaA~lG~pl~~~~~ig~lp~~~~~r~~ 223 (273)
++|..++++| |.+. ......+++ ..|+. +. ++++ +..+..++..+|++.++..++| +...
T Consensus 82 ~~G~~v~ivT--~~~~-~~~~~~~l~---~~gl~~~f~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~ig-------D~~~ 148 (187)
T 2wm8_A 82 SLGVPGAAAS--RTSE-IEGANQLLE---LFDLFRYFVHREIYPGSKITHFERLQQKTGIPFSQMIFFD-------DERR 148 (187)
T ss_dssp HHTCCEEEEE--CCSC-HHHHHHHHH---HTTCTTTEEEEEESSSCHHHHHHHHHHHHCCCGGGEEEEE-------SCHH
T ss_pred HCCceEEEEe--CCCC-hHHHHHHHH---HcCcHhhcceeEEEeCchHHHHHHHHHHcCCChHHEEEEe-------CCcc
Confidence 4588899996 4331 111222333 33442 32 3344 3457788899999988888774 2245
Q ss_pred HHHhhhCCCCeEEEEeCcccHHHHHHHHhh
Q 024054 224 RLMLSANEVKTQIFYVPPHKLLQFLEETSL 253 (273)
Q Consensus 224 ~L~~l~~~~~tlVl~~~~~~l~~i~~~L~e 253 (273)
++..+.+.+-..+.+..+...+++.+.|.+
T Consensus 149 Di~~a~~aG~~~i~v~~g~~~~~~~~~l~~ 178 (187)
T 2wm8_A 149 NIVDVSKLGVTCIHIQNGMNLQTLSQGLET 178 (187)
T ss_dssp HHHHHHTTTCEEEECSSSCCHHHHHHHHHH
T ss_pred ChHHHHHcCCEEEEECCCCChHHHHHHHHH
Confidence 676666667667777766666666665554
No 42
>3kwm_A Ribose-5-phosphate isomerase A; structural genomics, IDP02119, center for structu genomics of infectious diseases, csgid; 2.32A {Francisella tularensis subsp}
Probab=31.97 E-value=1e+02 Score=26.45 Aligned_cols=57 Identities=12% Similarity=0.098 Sum_probs=37.0
Q ss_pred HHHHHHHHhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEE-EccchHHHHHHHhCCCCCc
Q 024054 143 EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVP-IPGASAFVAALSASGLATD 206 (273)
Q Consensus 143 ~~~ii~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~vev-IPGISS~~aAaA~lG~pl~ 206 (273)
++...+.+++| .++.+ ++| ++..++++++.+...++.+ ||---.....+...|+++.
T Consensus 17 A~~A~~~V~~g-~~Igl-gsG-----ST~~~~i~~L~~~~~~itv~VtnS~~~a~~l~~~gi~l~ 74 (224)
T 3kwm_A 17 ATEAAKSITTE-ITLGV-GTG-----STVGFLIEELVNYRDKIKTVVSSSEDSTRKLKALGFDVV 74 (224)
T ss_dssp HHHHHTTCCSS-EEEEE-CCS-----HHHHHHHHHGGGCTTTEEEEEESCHHHHHHHHHTTCCBC
T ss_pred HHHHHHhCCCC-CEEEE-CCc-----HHHHHHHHHHHhhcCceEEEECCcHHHHHHHHHcCCeEE
Confidence 34444555555 67788 777 6778899999876446766 6644333445566799864
No 43
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=31.61 E-value=40 Score=25.47 Aligned_cols=101 Identities=16% Similarity=0.167 Sum_probs=48.7
Q ss_pred cchHHHHH-HHHhhCCEEEEcCCCCCHHHHhhccCCCcEEecCC------CCHHHHHHHHHHHHhCCCeEEEEccCCCCC
Q 024054 94 EDITLRAL-RVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHK------FNESQREQTVLNRLKQGEIVALISDAGTPG 166 (273)
Q Consensus 94 dlLTlrA~-~~L~~ADvV~~~~~~~~~~ll~~~~~~~~~i~~~~------~~~~~~~~~ii~~l~~G~~Vv~LS~~GDP~ 166 (273)
..+|...+ +.++ .++++.+ -|...+.-....+++.-+.+.. ....+..+.+.+.+.+++.|++.|..|
T Consensus 18 ~~is~~e~~~~l~-~~~~lID-vR~~~e~~~ghIpgAinip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivvyC~~G--- 92 (129)
T 1tq1_A 18 SSVSVTVAHDLLL-AGHRYLD-VRTPEEFSQGHACGAINVPYMNRGASGMSKNTDFLEQVSSHFGQSDNIIVGCQSG--- 92 (129)
T ss_dssp EEEEHHHHHHHHH-HTCCEEE-ESCHHHHHHCCBTTBEECCSCCCSTTTCCCTTTHHHHHTTTCCTTSSEEEEESSC---
T ss_pred cccCHHHHHHHhc-CCCEEEE-CCCHHHHhcCCCCCcEECcHhhcccccccCCHHHHHHHHhhCCCCCeEEEECCCC---
Confidence 34554443 4444 5667774 4554444332222332222210 111122333333345667888886555
Q ss_pred CCchHHHHHHHhhhCCCC-EEEEcc-chHHHHHHHhCCCCC
Q 024054 167 ISDPGTELAKLCVDEKIP-VVPIPG-ASAFVAALSASGLAT 205 (273)
Q Consensus 167 iys~~~~l~~~l~~~gi~-vevIPG-ISS~~aAaA~lG~pl 205 (273)
.+.......|.+.|++ +..+.| +.+... .|.|+
T Consensus 93 --~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~----~g~p~ 127 (129)
T 1tq1_A 93 --GRSIKATTDLLHAGFTGVKDIVGGYSAWAK----NGLPT 127 (129)
T ss_dssp --SHHHHHHHHHHHHHCCSEEEEECCHHHHHH----HTCCC
T ss_pred --cHHHHHHHHHHHcCCCCeEEeCCcHHHHHh----CCCCC
Confidence 2455666667777774 655554 554432 36664
No 44
>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}
Probab=31.22 E-value=1.6e+02 Score=24.28 Aligned_cols=53 Identities=19% Similarity=0.156 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchH
Q 024054 140 SQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASA 193 (273)
Q Consensus 140 ~~~~~~ii~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~vevIPGISS 193 (273)
+...+.+...++.|++|+..+ .+.+.......++.+.+++.|..+.+-+|.+-
T Consensus 61 ~~~~~~~~~~l~~G~~vv~~~-~~~~~~~~~~~~l~~~a~~~g~~~~i~~~~~g 113 (236)
T 2dc1_A 61 QAVKDYAEKILKAGIDLIVLS-TGAFADRDFLSRVREVCRKTGRRVYIASGAIG 113 (236)
T ss_dssp HHHHHHHHHHHHTTCEEEESC-GGGGGSHHHHHHHHHHHHHHCCCEEECCTTCS
T ss_pred HHHHHHHHHHHHCCCcEEEEC-cccCChHHHHHHHHHHHHhcCCeEEecCcccc
Confidence 344455667778999877763 44433333236777777777887777777653
No 45
>3bed_A PTS system, IIA component; mannose/sorbose, phosphotransferase system, structural genom APC28805, PSI-2, protein structure initiative; HET: MSE MLY; 1.45A {Enterococcus faecalis} SCOP: c.54.1.1
Probab=30.94 E-value=1.2e+02 Score=23.57 Aligned_cols=52 Identities=12% Similarity=0.128 Sum_probs=28.8
Q ss_pred HHHHHHHhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHh
Q 024054 144 QTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSA 200 (273)
Q Consensus 144 ~~ii~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~vevIPGISS~~aAaA~ 200 (273)
+..++.+.. +.|.+++|. +.|+-......+...+.+++++.|++--...-+.
T Consensus 53 ~~~i~~~~~-~gvliLtDl----~GGSp~n~a~~~~~~~~~v~vi~GvNlpmlle~~ 104 (142)
T 3bed_A 53 AAILKEAGN-VPTLVLADL----XGGTPCNVAMMAMGTYPQLRVVAGLNLAMAIEAA 104 (142)
T ss_dssp HHHHHHHCS-CCEEEEESS----TTSHHHHHHHHHTTTCTTEEEEESCCHHHHHHHH
T ss_pred HHHHHhcCC-CCEEEEEEC----CCCHHHHHHHHHhccCCCEEEEeCCCHHHHHHHH
Confidence 333444444 567777774 2333233333333334479999999876654443
No 46
>3l7o_A Ribose-5-phosphate isomerase A; RPIA; 1.70A {Streptococcus mutans}
Probab=30.63 E-value=58 Score=28.02 Aligned_cols=58 Identities=12% Similarity=0.173 Sum_probs=35.4
Q ss_pred HHHHHHHHHhCCCeEEEEccCCCCCCCchHHHHHHHhhhC----CCCEEEEccchHHHHHHHhCCCCCc
Q 024054 142 REQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDE----KIPVVPIPGASAFVAALSASGLATD 206 (273)
Q Consensus 142 ~~~~ii~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~----gi~vevIPGISS~~aAaA~lG~pl~ 206 (273)
.++...+.+++| .++.+ ++| ++..++++++.+. +.++.+||---.....+...|+++.
T Consensus 8 iA~~A~~~V~dg-~vIgL-GsG-----ST~~~~i~~L~~~~~~~~~~i~~VttS~~t~~~l~~~Gi~l~ 69 (225)
T 3l7o_A 8 AGVRAAQYVEDG-MIVGL-GTG-----STAYYFVEEVGRRVQEEGLQVIGVTTSSRTTAQAQALGIPLK 69 (225)
T ss_dssp HHHHHHTTCCTT-CEEEE-CCS-----TTHHHHHHHHHHHHHHHCCCCEEEESSHHHHHHHHHHTCCBC
T ss_pred HHHHHHHhCCCC-CEEEE-CCc-----HHHHHHHHHHHHhhhhcCCCEEEEcCCHHHHHHHhccCceEE
Confidence 345555666666 57777 778 4556666666543 5567777654333344556799864
No 47
>2i6x_A Hydrolase, haloacid dehalogenase-like family; HAD superfamily, struct genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Porphyromonas gingivalis}
Probab=30.43 E-value=1.9e+02 Score=22.36 Aligned_cols=57 Identities=11% Similarity=0.152 Sum_probs=40.1
Q ss_pred ccchHHHHHHHhCCCCCccEEEEEEeCCCCcchHHHHHhhhCCCCeEEEEeCcccHHHHHHHHh
Q 024054 189 PGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETS 252 (273)
Q Consensus 189 PGISS~~aAaA~lG~pl~~~~~ig~lp~~~~~r~~~L~~l~~~~~tlVl~~~~~~l~~i~~~L~ 252 (273)
|-+..+..++..+|++..+..++| +...++..+.+.+-..+....+..+++.++.+.
T Consensus 151 p~~~~~~~~~~~~~~~~~~~~~ig-------D~~~Di~~a~~aG~~~~~~~~~~~~~~~l~~~l 207 (211)
T 2i6x_A 151 PNEDIFLEMIADSGMKPEETLFID-------DGPANVATAERLGFHTYCPDNGENWIPAITRLL 207 (211)
T ss_dssp TSHHHHHHHHHHHCCCGGGEEEEC-------SCHHHHHHHHHTTCEEECCCTTCCCHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCChHHeEEeC-------CCHHHHHHHHHcCCEEEEECCHHHHHHHHHHHH
Confidence 455678889999999988877773 123466666666767777777777777666544
No 48
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=29.56 E-value=1.8e+02 Score=21.82 Aligned_cols=90 Identities=12% Similarity=0.060 Sum_probs=44.3
Q ss_pred chH-HHHHHHHh-hCCEEEEcCCCCCHHHHh-hcc------CCCcEEecCCCCHHHHHHHHHHHH--hCCCeEEEEccCC
Q 024054 95 DIT-LRALRVLK-SANVILSEDTRHSGKLLQ-YYN------IKTPLLSYHKFNESQREQTVLNRL--KQGEIVALISDAG 163 (273)
Q Consensus 95 lLT-lrA~~~L~-~ADvV~~~~~~~~~~ll~-~~~------~~~~~i~~~~~~~~~~~~~ii~~l--~~G~~Vv~LS~~G 163 (273)
.+| ..+.+.++ +-+.++.+ -|...+.-. .+. ++...+.+......+..+.+.+.. .+++.|++.|.+|
T Consensus 6 ~is~~e~~~~l~~~~~~~liD-VR~~~E~~~~~~~~~~g~~~ga~~ip~~~~~~~~~~~~l~~~~~~~~~~~ivv~C~sG 84 (134)
T 1vee_A 6 SGSAKNAYTKLGTDDNAQLLD-IRATADFRQVGSPNIKGLGKKAVSTVYNGEDKPGFLKKLSLKFKDPENTTLYILDKFD 84 (134)
T ss_dssp BCCHHHHHHHHHHCTTEEEEE-CSCHHHHHHTCEECCTTTSCCCEECCCCGGGHHHHHHHHHTTCSCGGGCEEEEECSSS
T ss_pred ccCHHHHHHHHHhCCCeEEEE-cCCHHHHhhcCCCcccccCCceEEeecccccChhHHHHHHHHhCCCCCCEEEEEeCCC
Confidence 344 44455666 35788884 555545432 221 122222222211122223332222 4567888887665
Q ss_pred CCCCCchHHHHHHHhhhCCCC-EEEEcc
Q 024054 164 TPGISDPGTELAKLCVDEKIP-VVPIPG 190 (273)
Q Consensus 164 DP~iys~~~~l~~~l~~~gi~-vevIPG 190 (273)
. +.....+.|.+.|++ +..+.|
T Consensus 85 ~-----RS~~aa~~L~~~G~~~v~~l~G 107 (134)
T 1vee_A 85 G-----NSELVAELVALNGFKSAYAIKD 107 (134)
T ss_dssp T-----THHHHHHHHHHHTCSEEEECTT
T ss_pred C-----cHHHHHHHHHHcCCcceEEecC
Confidence 3 445556667777874 655544
No 49
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=25.68 E-value=58 Score=27.38 Aligned_cols=38 Identities=16% Similarity=0.053 Sum_probs=23.8
Q ss_pred CCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEcc
Q 024054 152 QGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPG 190 (273)
Q Consensus 152 ~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~vevIPG 190 (273)
+|+++++- .+|--+.|.-+.++++.|.+.|.+|+++--
T Consensus 6 ~~k~I~lg-iTGs~aa~~k~~~ll~~L~~~g~eV~vv~T 43 (201)
T 3lqk_A 6 AGKHVGFG-LTGSHCTYHEVLPQMERLVELGAKVTPFVT 43 (201)
T ss_dssp TTCEEEEE-CCSCGGGGGGTHHHHHHHHHTTCEEEEECS
T ss_pred CCCEEEEE-EEChHHHHHHHHHHHHHHhhCCCEEEEEEC
Confidence 35666666 466666664556667777666766666543
No 50
>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A
Probab=25.45 E-value=2.3e+02 Score=21.73 Aligned_cols=97 Identities=13% Similarity=0.079 Sum_probs=49.7
Q ss_pred CeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCC--CHHH--------HhhccCCCcEEecCCCCHHHHHHHHHHHH
Q 024054 81 PGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRH--SGKL--------LQYYNIKTPLLSYHKFNESQREQTVLNRL 150 (273)
Q Consensus 81 g~l~iVGvGPGdpdlLTlrA~~~L~~ADvV~~~~~~~--~~~l--------l~~~~~~~~~i~~~~~~~~~~~~~ii~~l 150 (273)
.++-+||.++ +|+.+--+..+.|++...=+++-... .+.+ ++.+.....+..+. ...+...+.+.+..
T Consensus 14 ~~vaVvGas~-~~g~~G~~~~~~l~~~G~~v~~vnp~~~~~~i~G~~~~~sl~el~~~vDlavi~-vp~~~~~~v~~~~~ 91 (140)
T 1iuk_A 14 KTIAVLGAHK-DPSRPAHYVPRYLREQGYRVLPVNPRFQGEELFGEEAVASLLDLKEPVDILDVF-RPPSALMDHLPEVL 91 (140)
T ss_dssp CEEEEETCCS-STTSHHHHHHHHHHHTTCEEEEECGGGTTSEETTEECBSSGGGCCSCCSEEEEC-SCHHHHTTTHHHHH
T ss_pred CEEEEECCCC-CCCChHHHHHHHHHHCCCEEEEeCCCcccCcCCCEEecCCHHHCCCCCCEEEEE-eCHHHHHHHHHHHH
Confidence 4799999986 77777777777777765434431111 1111 11111111221111 12222222233334
Q ss_pred hCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCE
Q 024054 151 KQGEIVALISDAGTPGISDPGTELAKLCVDEKIPV 185 (273)
Q Consensus 151 ~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~v 185 (273)
+.|-+.+++ ..|.. ..++.+.+++.|+++
T Consensus 92 ~~gi~~i~~-~~g~~-----~~~~~~~a~~~Gir~ 120 (140)
T 1iuk_A 92 ALRPGLVWL-QSGIR-----HPEFEKALKEAGIPV 120 (140)
T ss_dssp HHCCSCEEE-CTTCC-----CHHHHHHHHHTTCCE
T ss_pred HcCCCEEEE-cCCcC-----HHHHHHHHHHcCCEE
Confidence 455555566 45543 367888888888875
No 51
>3op6_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 2.00A {Legionella pneumophila subsp}
Probab=24.96 E-value=1.6e+02 Score=22.84 Aligned_cols=35 Identities=11% Similarity=0.085 Sum_probs=25.4
Q ss_pred HHHHHHhhhCCCCEEE--EccchHHHHHHHhCCCCCc
Q 024054 172 TELAKLCVDEKIPVVP--IPGASAFVAALSASGLATD 206 (273)
Q Consensus 172 ~~l~~~l~~~gi~vev--IPGISS~~aAaA~lG~pl~ 206 (273)
..+.+.|.+.|+++++ .|+..+..-++..+|++..
T Consensus 5 ~~v~~~L~~~~i~~~~~~~~~~~t~~~~a~~lg~~~~ 41 (152)
T 3op6_A 5 KKLKQFLDSHKIKYLSIAHSPAYTAQEIAASAHVSGK 41 (152)
T ss_dssp HHHHHHHHHTTCCEEEEEECTTCCHHHHC----CCSS
T ss_pred HHHHHHHHHcCCceEEEEcCCCCCHHHHHHHcCCChh
Confidence 4677888889998877 6888888889999999985
No 52
>3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A*
Probab=24.11 E-value=96 Score=27.73 Aligned_cols=62 Identities=16% Similarity=0.131 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhCCCeEEEEccCCCCCCCch--HHHHHHHhhhCCCCEEEEccch------HHHHHHHhCCCCCc
Q 024054 140 SQREQTVLNRLKQGEIVALISDAGTPGISDP--GTELAKLCVDEKIPVVPIPGAS------AFVAALSASGLATD 206 (273)
Q Consensus 140 ~~~~~~ii~~l~~G~~Vv~LS~~GDP~iys~--~~~l~~~l~~~gi~vevIPGIS------S~~aAaA~lG~pl~ 206 (273)
+...+.+.+.++.|-+-++- =.+|+. ..+.++.+++.|+++-|+|||. ++.-.+...|+.+-
T Consensus 163 ~~d~~~Lk~KvdAGAdf~iT-----Q~ffD~~~~~~f~~~~r~~Gi~vPIi~GImPi~s~~~~~~~~~~~Gv~iP 232 (304)
T 3fst_A 163 QADLLNLKRKVDAGANRAIT-----QFFFDVESYLRFRDRCVSAGIDVEIIPGILPVSNFKQAKKLADMTNVRIP 232 (304)
T ss_dssp HHHHHHHHHHHHHTCCEEEE-----CCCSCHHHHHHHHHHHHHTTCCSCEECEECCCSCHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHcCCCEEEe-----CccCCHHHHHHHHHHHHhcCCCCcEEEEecccCCHHHHHHHHHcCCCcCC
Confidence 34566777777778765443 267764 4557788888999999999985 33333456677653
No 53
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=24.11 E-value=61 Score=25.22 Aligned_cols=33 Identities=12% Similarity=0.157 Sum_probs=22.6
Q ss_pred CCCeEEEEecCCCCccchHHHHHHHHhhCCEEEEcC
Q 024054 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSED 114 (273)
Q Consensus 79 ~~g~l~iVGvGPGdpdlLTlrA~~~L~~ADvV~~~~ 114 (273)
|+-.|.|||.||.. ||....=+-+..++++++.
T Consensus 1 Mt~dV~IIGaGpaG---L~aA~~La~~G~~V~v~Ek 33 (336)
T 3kkj_A 1 MTVPIAIIGTGIAG---LSAAQALTAAGHQVHLFDK 33 (336)
T ss_dssp -CCCEEEECCSHHH---HHHHHHHHHTTCCEEEECS
T ss_pred CCCCEEEECcCHHH---HHHHHHHHHCCCCEEEEEC
Confidence 44569999999954 5554443445579999974
No 54
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=23.53 E-value=2e+02 Score=20.43 Aligned_cols=84 Identities=13% Similarity=0.129 Sum_probs=44.3
Q ss_pred chHHH-HHHHHhhCCEEEEcCCCCCHHHHhhccCCCcEEecCCCCHHHHHHHHHHHHhCCCeEEEEccCCCCCCCchHHH
Q 024054 95 DITLR-ALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTE 173 (273)
Q Consensus 95 lLTlr-A~~~L~~ADvV~~~~~~~~~~ll~~~~~~~~~i~~~~~~~~~~~~~ii~~l~~G~~Vv~LS~~GDP~iys~~~~ 173 (273)
.+|.. ..+.+++-++++.+ -|...+.-+..-+++.- ++ ..+..+. ++.+.+++.|++.|..|. +...
T Consensus 6 ~i~~~~l~~~~~~~~~~liD-vR~~~e~~~ghIpgA~~--ip---~~~l~~~-~~~l~~~~~ivvyc~~g~-----rs~~ 73 (108)
T 1gmx_A 6 CINVADAHQKLQEKEAVLVD-IRDPQSFAMGHAVQAFH--LT---NDTLGAF-MRDNDFDTPVMVMCYHGN-----SSKG 73 (108)
T ss_dssp EECHHHHHHHHHTTCCEEEE-CSCHHHHHHCEETTCEE--CC---HHHHHHH-HHHSCTTSCEEEECSSSS-----HHHH
T ss_pred ccCHHHHHHHHhCCCCEEEE-cCCHHHHHhCCCccCEe--CC---HHHHHHH-HHhcCCCCCEEEEcCCCc-----hHHH
Confidence 34433 34556666777874 55544433222222221 21 2222233 334566788888865542 5566
Q ss_pred HHHHhhhCCCC-EEEEcc
Q 024054 174 LAKLCVDEKIP-VVPIPG 190 (273)
Q Consensus 174 l~~~l~~~gi~-vevIPG 190 (273)
....|.+.|++ +.++.|
T Consensus 74 a~~~L~~~G~~~v~~l~G 91 (108)
T 1gmx_A 74 AAQYLLQQGYDVVYSIDG 91 (108)
T ss_dssp HHHHHHHHTCSSEEEETT
T ss_pred HHHHHHHcCCceEEEecC
Confidence 66777777874 766655
No 55
>3hhe_A Ribose-5-phosphate isomerase A; niaid, ssgcid, decode, SBRI, UW, STRU genomics, seattle structural genomics center for infectious; HET: 5RP; 2.30A {Bartonella henselae}
Probab=23.17 E-value=1.6e+02 Score=25.72 Aligned_cols=57 Identities=12% Similarity=0.095 Sum_probs=36.0
Q ss_pred HHHHHHHHhCCCeEEEEccCCCCCCCchHHHHHHHhhh---CCCCEEEEccchHHHHHHHhCCCCCc
Q 024054 143 EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVD---EKIPVVPIPGASAFVAALSASGLATD 206 (273)
Q Consensus 143 ~~~ii~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~---~gi~vevIPGISS~~aAaA~lG~pl~ 206 (273)
++...+.+++| .++.+ ++| ++..++++++.+ +|.++.+||---.....+...|+++.
T Consensus 32 A~~A~~~V~dg-~vIgL-GsG-----ST~~~~i~~L~~~~~~gl~ItvVttS~~ta~~l~~~GI~l~ 91 (255)
T 3hhe_A 32 ALKALEFVEDD-MRLGI-GSG-----STVNEFIPLLGERVANGLRVTCVATSQYSEQLCHKFGVPIS 91 (255)
T ss_dssp HHHHHTTCCTT-EEEEE-CCS-----HHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHTTCCBC
T ss_pred HHHHHHhCCCC-CEEEE-CCc-----HHHHHHHHHHHHhhccCCcEEEEcCCHHHHHHHHHcCCcEE
Confidence 34444555555 67777 677 566667776654 35678888765444455667799863
No 56
>3apt_A Methylenetetrahydrofolate reductase; TIM barrel, oxidoreductase, flavin; HET: FAD; 1.85A {Thermus thermophilus} PDB: 3apy_A* 1v93_A*
Probab=22.80 E-value=80 Score=28.21 Aligned_cols=63 Identities=10% Similarity=0.029 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHhCCCeEEEEccCCCCCCCch--HHHHHHHhhhCCCCEEEEccch------HHHHHHHhCCCCCc
Q 024054 139 ESQREQTVLNRLKQGEIVALISDAGTPGISDP--GTELAKLCVDEKIPVVPIPGAS------AFVAALSASGLATD 206 (273)
Q Consensus 139 ~~~~~~~ii~~l~~G~~Vv~LS~~GDP~iys~--~~~l~~~l~~~gi~vevIPGIS------S~~aAaA~lG~pl~ 206 (273)
.+...+.+.+.++.|-+-.+- =.+|+. ..+.++.+++.|+.+-|+|||. ++...+...|+.+-
T Consensus 159 ~~~d~~~Lk~Kv~aGAdf~iT-----Q~ffD~~~~~~f~~~~r~~Gi~vPIi~GImPi~s~~~~~~~~~~~Gv~iP 229 (310)
T 3apt_A 159 LEADLRHFKAKVEAGLDFAIT-----QLFFNNAHYFGFLERARRAGIGIPILPGIMPVTSYRQLRRFTEVCGASIP 229 (310)
T ss_dssp HHHHHHHHHHHHHHHCSEEEE-----CCCSCHHHHHHHHHHHHHTTCCSCEECEECCCCCTTHHHHHHHTSCCCCC
T ss_pred HHHHHHHHHHHHHcCCCEEEe-----cccCCHHHHHHHHHHHHHcCCCCeEEEEecccCCHHHHHHHHHcCCCCCC
Confidence 344567777777778774443 267765 4557788888999999999985 22233455676543
No 57
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=22.27 E-value=2.9e+02 Score=21.81 Aligned_cols=95 Identities=8% Similarity=0.121 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhCCCeEEEEccCCCCCCCchHHHHHHHh------hhCCCCEEEEccchHHHHHHH-hCC-----------
Q 024054 141 QREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLC------VDEKIPVVPIPGASAFVAALS-ASG----------- 202 (273)
Q Consensus 141 ~~~~~ii~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l------~~~gi~vevIPGISS~~aAaA-~lG----------- 202 (273)
+.++.+.+.+.++++|.++ =.|.. +....++...+ ...|+++..+++.++...+.. -.+
T Consensus 33 ~~~~~i~~~i~~a~~I~i~-G~G~S--~~~A~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 109 (199)
T 1x92_A 33 QASLVMVNALLNEGKILSC-GNGGS--AGDAQHFSSELLNRFERERPSLPAVALTTDSSTITSIANDYSYNEVFSKQIRA 109 (199)
T ss_dssp HHHHHHHHHHHTTCCEEEE-CSTHH--HHHHHHHHHHHHTCSSSCCCCCCEEETTCCHHHHHHHHHHTCGGGTTHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEE-cCchh--HHHHHHHHHHHhcCcccCCCCCceEecCCChhHHHHhhcCccHHHHHHHHHHh
Confidence 3445555777788888777 35532 22344555566 446778877765444333221 111
Q ss_pred -CCCccEEEEEEeCCCCcch--HHHHHhhhCCCCeEEEEeC
Q 024054 203 -LATDEFTFVGFLPKHARSR--TERLMLSANEVKTQIFYVP 240 (273)
Q Consensus 203 -~pl~~~~~ig~lp~~~~~r--~~~L~~l~~~~~tlVl~~~ 240 (273)
+.-+|+.++ +|..++.+ .+.++.+.+.+-.+|....
T Consensus 110 ~~~~~DvvI~--iS~SG~t~~~i~~~~~ak~~g~~vI~IT~ 148 (199)
T 1x92_A 110 LGQPGDVLLA--ISTSGNSANVIQAIQAAHDREMLVVALTG 148 (199)
T ss_dssp HCCTTCEEEE--ECSSSCCHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCCCCCEEEE--EeCCCCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 333465554 46555432 2334444444544444444
No 58
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=22.11 E-value=67 Score=27.19 Aligned_cols=42 Identities=12% Similarity=0.085 Sum_probs=26.2
Q ss_pred CCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHH
Q 024054 152 QGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAF 194 (273)
Q Consensus 152 ~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~vevIPGISS~ 194 (273)
+|+++++. .+|-...|-.+.++++.|.+.|.+|.++---++.
T Consensus 4 ~~k~Illg-iTGsiaayk~~~~ll~~L~~~g~eV~vv~T~~A~ 45 (207)
T 3mcu_A 4 KGKRIGFG-FTGSHCTYEEVMPHLEKLIAEGAEVRPVVSYTVQ 45 (207)
T ss_dssp TTCEEEEE-ECSCGGGGTTSHHHHHHHHHTTCEEEEEECC---
T ss_pred CCCEEEEE-EEChHHHHHHHHHHHHHHHhCCCEEEEEEehHHH
Confidence 46777777 4776666643567777777777777776555544
No 59
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=21.93 E-value=97 Score=22.05 Aligned_cols=36 Identities=17% Similarity=0.321 Sum_probs=25.4
Q ss_pred HhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEcc
Q 024054 150 LKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPG 190 (273)
Q Consensus 150 l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~vevIPG 190 (273)
+.+++.|++.|..| .+.......|.+.|+++.++.|
T Consensus 53 l~~~~~iv~yC~~g-----~rs~~a~~~L~~~G~~v~~l~G 88 (103)
T 3eme_A 53 FNKNEIYYIVCAGG-----VRSAKVVEYLEANGIDAVNVEG 88 (103)
T ss_dssp CCTTSEEEEECSSS-----SHHHHHHHHHHTTTCEEEEETT
T ss_pred CCCCCeEEEECCCC-----hHHHHHHHHHHHCCCCeEEeCC
Confidence 35677888886444 3556677778888888877776
No 60
>2r47_A Uncharacterized protein MTH_862; unknown function, structural genomics, APC5901, PSI-2; 1.88A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=21.73 E-value=1.3e+02 Score=24.55 Aligned_cols=46 Identities=22% Similarity=0.367 Sum_probs=35.3
Q ss_pred HHHHHHHHhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccch
Q 024054 143 EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGAS 192 (273)
Q Consensus 143 ~~~ii~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~vevIPGIS 192 (273)
.+.-.+.++++++|+++ |.|++..++.+|..+..+. -+...||...
T Consensus 16 L~~Fk~~v~~~~kIvf~---Gs~GvCtPFaeL~~YaiR~-~~~~FiP~~d 61 (157)
T 2r47_A 16 LGVFREAVKDAERIGFA---GVPGVCTPFAQLFAYAVRD-KDNIFIPNTD 61 (157)
T ss_dssp HHHHHHHTTTCSEEEEE---ECTTTTHHHHHHHHHHTTT-SEEEEEETTC
T ss_pred HHHHHHHhcCCCeEEEE---CCCeeecCHHhhheeeeeC-CceEEcCCCC
Confidence 44445566778888887 9999999999998876654 5778888753
No 61
>2pjm_A Ribose-5-phosphate isomerase A; 3D-structure, structural genomics, pentose phosphate pathway, carbon fixation, NPPSFA; 1.78A {Methanocaldococcus jannaschii} PDB: 3ixq_A*
Probab=21.06 E-value=1.1e+02 Score=26.14 Aligned_cols=57 Identities=12% Similarity=0.150 Sum_probs=36.5
Q ss_pred HHHHHHHHhCCCeEEEEccCCCCCCCchHHHHHHHhhhC----CCCEEEEccchHHHHHHHhCCCCCc
Q 024054 143 EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDE----KIPVVPIPGASAFVAALSASGLATD 206 (273)
Q Consensus 143 ~~~ii~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~----gi~vevIPGISS~~aAaA~lG~pl~ 206 (273)
++...+.+++| .++.+ ++| ++..++++++.+. +.++.+||---.....+...|+++.
T Consensus 11 A~~A~~~I~~g-~~Igl-gsG-----ST~~~~~~~L~~~~~~~~l~itvVtnS~~~a~~l~~~gi~v~ 71 (226)
T 2pjm_A 11 AKEAVKLVKDG-MVIGL-GTG-----STAALFIRELGNRIREEELTVFGIPTSFEAKMLAMQYEIPLV 71 (226)
T ss_dssp HHHHGGGCCTT-CEEEE-CCS-----HHHHHHHHHHHHHHHHHTCCCEEEESSHHHHHHHHHTTCCBC
T ss_pred HHHHHHHCCCC-CEEEE-CCC-----HHHHHHHHHHHhhhhccCCcEEEEeCcHHHHHHHHhcCCeEE
Confidence 34445555566 57788 777 5666677776543 4567777765555556677898864
No 62
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=20.85 E-value=3.1e+02 Score=21.54 Aligned_cols=47 Identities=15% Similarity=0.299 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhCCCeEEEEccCCCCCCCchHHHHHHHhh------hCCCCEEEEcc
Q 024054 141 QREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCV------DEKIPVVPIPG 190 (273)
Q Consensus 141 ~~~~~ii~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~------~~gi~vevIPG 190 (273)
+..+.+.+.+.++++|.++ =.|.. +....++...+. ..|+++..+++
T Consensus 29 ~~~~~~~~~i~~a~~I~i~-G~G~S--~~~A~~~~~~l~~~~~~~~~g~~~~~~~~ 81 (196)
T 2yva_A 29 RAAMTLVQSLLNGNKILCC-GNGTS--AANAQHFAASMINRFETERPSLPAIALNT 81 (196)
T ss_dssp HHHHHHHHHHHTTCCEEEE-ESTHH--HHHHHHHHHHHHTCSSSCCCCCCEEESSC
T ss_pred HHHHHHHHHHHcCCEEEEE-eCchh--hHHHHHHHHHHhccccccCCCCceEeecC
Confidence 4567777888888888877 35532 223344555555 56778877764
No 63
>1xdp_A Polyphosphate kinase; PPK, PPK complex with AMPPNP, AMPPNP, transferase; HET: ATP; 2.50A {Escherichia coli} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4 PDB: 1xdo_A*
Probab=20.50 E-value=1e+02 Score=30.83 Aligned_cols=85 Identities=12% Similarity=0.192 Sum_probs=49.1
Q ss_pred HHHHHhhCCEEEEcCCCCCHHHHhhccC-----CCcEE---ecCCCCHHHHHHHHHHHHhCCCeEEEEccCCCCCC-Cch
Q 024054 100 ALRVLKSANVILSEDTRHSGKLLQYYNI-----KTPLL---SYHKFNESQREQTVLNRLKQGEIVALISDAGTPGI-SDP 170 (273)
Q Consensus 100 A~~~L~~ADvV~~~~~~~~~~ll~~~~~-----~~~~i---~~~~~~~~~~~~~ii~~l~~G~~Vv~LS~~GDP~i-ys~ 170 (273)
-.++|++-|+++...-..-..+++.+.. +...+ .|.-.+.....+.+++++++|.+|-++. .+-+.+ ...
T Consensus 331 if~~i~~~D~ll~~P~~sf~~v~~~I~~A~~dp~v~~I~it~Y~~~~d~~I~~AL~~AA~rGV~VrVLv-d~~a~~~~~~ 409 (687)
T 1xdp_A 331 GFDAIRERDVLLYYPYHTFEHVLELLRQASFDPSVLAIKINIYRVAKDSRIIDSMIHAAHNGKKVTVVV-ELQARFDEEA 409 (687)
T ss_dssp HHHHHHHSCEEEEETTBCTHHHHHHHHHHHHCTTEEEEEEEESSCCTTCHHHHHHHHHHHTTCEEEEEE-CTTCSSTTTT
T ss_pred hhHHHhcCCEEEECchhhhhhHHHHHHHHhhCCcceEEEEEeeeecCcHHHHHHHHHHHhcCCEEEEEE-CCCcccchhh
Confidence 4788899999998643222344543321 11122 1221134678899999999999999985 444422 111
Q ss_pred HHHHHHHhhhCCCCE
Q 024054 171 GTELAKLCVDEKIPV 185 (273)
Q Consensus 171 ~~~l~~~l~~~gi~v 185 (273)
.....+.+.+.|++|
T Consensus 410 n~~~~~~L~~aGV~V 424 (687)
T 1xdp_A 410 NIHWAKRLTEAGVHV 424 (687)
T ss_dssp TTTTTHHHHHHTCEE
T ss_pred HHHHHHHHHHCCCEE
Confidence 223445566678655
No 64
>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A*
Probab=20.24 E-value=1.6e+02 Score=25.76 Aligned_cols=66 Identities=12% Similarity=0.071 Sum_probs=41.9
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEccCCC-CCCC-chHHHHHHHhhhCCCCEEEEccchHHHH--HHHhCCCC
Q 024054 138 NESQREQTVLNRLKQGEIVALISDAGT-PGIS-DPGTELAKLCVDEKIPVVPIPGASAFVA--ALSASGLA 204 (273)
Q Consensus 138 ~~~~~~~~ii~~l~~G~~Vv~LS~~GD-P~iy-s~~~~l~~~l~~~gi~vevIPGISS~~a--AaA~lG~p 204 (273)
+.+++.+.+.+..+.|-+-+.++ .|. |.+. ....++++.+++.++.+.+-+|...-.. .....|+.
T Consensus 85 s~eei~~~i~~~~~~g~~~i~~~-gGe~p~~~~~~~~~li~~i~~~~~~i~~s~g~l~~e~l~~L~~ag~~ 154 (348)
T 3iix_A 85 TPEEIVERARLAVQFGAKTIVLQ-SGEDPYXMPDVISDIVKEIKKMGVAVTLSLGEWPREYYEKWKEAGAD 154 (348)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEE-ESCCGGGTTHHHHHHHHHHHTTSCEEEEECCCCCHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHCCCCEEEEE-eCCCCCccHHHHHHHHHHHHhcCceEEEecCCCCHHHHHHHHHhCCC
Confidence 45666666655555564444553 687 7665 5667788888887888888888754333 33334553
No 65
>1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A
Probab=20.04 E-value=4.3e+02 Score=23.08 Aligned_cols=92 Identities=16% Similarity=0.224 Sum_probs=51.7
Q ss_pred HHHHHHHhhC-CEEEEcCCCCCHHHHhhccCCCcEEe-cCCCCHHHHHHHHHHHHhCCCeEEEEccCCCCCC------C-
Q 024054 98 LRALRVLKSA-NVILSEDTRHSGKLLQYYNIKTPLLS-YHKFNESQREQTVLNRLKQGEIVALISDAGTPGI------S- 168 (273)
Q Consensus 98 lrA~~~L~~A-DvV~~~~~~~~~~ll~~~~~~~~~i~-~~~~~~~~~~~~ii~~l~~G~~Vv~LS~~GDP~i------y- 168 (273)
...++.|++. |+.+.-|++.++.+-+.+..++.++. ....+.++..+.+.+ .|-.++++.-.|.|-- |
T Consensus 79 ~pvi~~l~~~~~~piSIDT~~~~va~aAl~aGa~iINdvsg~~d~~~~~~~a~---~~~~vVlmh~~G~p~tm~~~~~y~ 155 (282)
T 1aj0_A 79 IPVVEAIAQRFEVWISVDTSKPEVIRESAKVGAHIINDIRSLSEPGALEAAAE---TGLPVCLMHMQGNPKTMQEAPKYD 155 (282)
T ss_dssp HHHHHHHHHHCCCEEEEECCCHHHHHHHHHTTCCEEEETTTTCSTTHHHHHHH---HTCCEEEECCSSCTTCCSCCCCCS
T ss_pred HHHHHHHHhhcCCeEEEeCCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHH---hCCeEEEEccCCCCccccccCccc
Confidence 4566666654 88777777654333333444666663 222233344443332 3556777755677753 1
Q ss_pred -------chHHHHHHHhhhCCCC---EEEEccch
Q 024054 169 -------DPGTELAKLCVDEKIP---VVPIPGAS 192 (273)
Q Consensus 169 -------s~~~~l~~~l~~~gi~---vevIPGIS 192 (273)
.-..+.++.+.+.|++ +-+=||+-
T Consensus 156 d~~~ev~~~l~~~i~~a~~~Gi~~~~IilDPg~g 189 (282)
T 1aj0_A 156 DVFAEVNRYFIEQIARCEQAGIAKEKLLLDPGFG 189 (282)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTT
T ss_pred hHHHHHHHHHHHHHHHHHHcCCChhhEEEeCCCC
Confidence 2233455666677886 88889864
Done!