BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024055
(273 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8VWJ1|HPT1_ARATH Homogentisate phytyltransferase 1, chloroplastic OS=Arabidopsis
thaliana GN=VTE2-1 PE=2 SV=1
Length = 393
Score = 221 bits (563), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 109/248 (43%), Positives = 169/248 (68%), Gaps = 6/248 (2%)
Query: 4 GRVKSEDDNKLKSFQAGFLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFF 63
G+ ++ D N S Q F +L + YRF+RP+T+ G V+++ S+ L ++ + D++P F
Sbjct: 79 GQPEAFDSN---SKQKSFRDSLDAFYRFSRPHTVIGTVLSILSVSFLAVEKVSDISPLLF 135
Query: 64 ---METVVPAALMAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSL 120
+E VV A +M IY+ +NQL DV+IDK+NKP LPLASG++S+ TG+AI + ++MS
Sbjct: 136 TGILEAVVAALMMNIYIVGLNQLSDVEIDKVNKPYLPLASGEYSVNTGIAIVASFSIMSF 195
Query: 121 AMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIH 180
+G ++GS PL W L + F+L TAYSI+LP LRWKR A +AA+ I+ + +Q +F++H
Sbjct: 196 WLGWIVGSWPLFWALFVSFMLGTAYSINLPLLRWKRFALVAAMCILAVRAIIVQIAFYLH 255
Query: 181 IQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMI 240
IQ +V GR ++ TR LIF T ++ S+ AL KD+ D++GDK +GIR+FSV LG++R+
Sbjct: 256 IQTHVFGRPILFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQKRVF 315
Query: 241 KELLNLFK 248
+ L +
Sbjct: 316 WTCVTLLQ 323
>sp|B7FA90|HPT1_ORYSJ Probable homogentisate phytyltransferase 1, chloroplastic OS=Oryza
sativa subsp. japonica GN=HPT1 PE=2 SV=1
Length = 404
Score = 212 bits (540), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 104/220 (47%), Positives = 151/220 (68%), Gaps = 3/220 (1%)
Query: 23 KNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFF---METVVPAALMAIYMTA 79
+L + YRF+RP+T+ G +++ S+ L ++NL D++P F +E VV A M IY+
Sbjct: 106 SSLDAFYRFSRPHTVIGTALSIVSVSLLAVENLSDVSPLFLTGLLEAVVAALFMNIYIVG 165
Query: 80 INQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWF 139
+NQL D++IDK+NKP LPLASG++S TGVA+ A MS +G +GS PL L + F
Sbjct: 166 LNQLFDIEIDKVNKPTLPLASGEYSPATGVALVSAFAAMSFGLGWAVGSQPLFLALFISF 225
Query: 140 ILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSLIFT 199
IL TAYSI+LPFLRWKR+A +AA+ I+ V +Q +FF+HIQ +V R V TR LIF
Sbjct: 226 ILGTAYSINLPFLRWKRSAVVAALCILAVRAVIVQLAFFLHIQTFVFRRPAVFTRPLIFA 285
Query: 200 TGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERM 239
T +T S+ AL KD+ D++GD+ +GI++FSV LG++++
Sbjct: 286 TAFMTFFSVVIALFKDIPDIEGDRIFGIKSFSVRLGQKKV 325
>sp|B9A1Q4|G4DT_SOYBN Glycinol 4-dimethylallyltransferase OS=Glycine max GN=G4DT PE=1
SV=1
Length = 409
Score = 168 bits (426), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 93/231 (40%), Positives = 140/231 (60%), Gaps = 4/231 (1%)
Query: 22 LKN-LKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFF---METVVPAALMAIYM 77
+KN L + Y F+ P T+ G+ + S L ++ L D++ +F ++ V+P + IY+
Sbjct: 109 VKNVLSAFYWFSYPYTMIGITLCAFSSSLLAVEKLSDISLSFLIGVLQGVLPQLFIEIYL 168
Query: 78 TAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLIL 137
+NQL D++IDKINKP LP+ASG FS KTGV I+ +S + GS PL L++
Sbjct: 169 CGVNQLYDLEIDKINKPHLPMASGQFSFKTGVIISAAFLALSFGFTWITGSWPLICNLVV 228
Query: 138 WFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSLI 197
TAYSID+P LRWKR F+AA+ ++ + + + S+F H+Q VL R + RSL
Sbjct: 229 IASSWTAYSIDVPLLRWKRYPFVAAMCMISTWALALPISYFHHMQTVVLKRPIGFPRSLG 288
Query: 198 FTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFK 248
F +T SL AL KD+ DV+GDKE+GI +F+V LG++R ++ F+
Sbjct: 289 FLVAFMTFYSLGLALSKDIPDVEGDKEHGIDSFAVRLGQKRAFWICVSFFE 339
>sp|B1B3P3|N8DT1_SOPFL Naringenin 8-dimethylallyltransferase 1, chloroplastic OS=Sophora
flavescens GN=N8DT-1 PE=1 SV=1
Length = 410
Score = 154 bits (389), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 78/215 (36%), Positives = 127/215 (59%), Gaps = 3/215 (1%)
Query: 28 LYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFF---METVVPAALMAIYMTAINQLV 84
Y+F RP + +V+ T + ++ L DL+ FF ++ VV + I+ +NQL
Sbjct: 117 FYKFCRPYAMFTIVLGATFKSLVAVEKLSDLSLAFFIGWLQVVVAVICIHIFGVGLNQLC 176
Query: 85 DVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTA 144
D++IDKINKPDLPLASG S + V IT + ++ L ++ S PL W + + ++ +A
Sbjct: 177 DIEIDKINKPDLPLASGKLSFRNVVIITASSLILGLGFAWIVDSWPLFWTVFISCMVASA 236
Query: 145 YSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVIT 204
Y++DLP LRWK+ L AI+ + V FF+H+Q V R R LIF T +++
Sbjct: 237 YNVDLPLLRWKKYPVLTAINFIADVAVTRSLGFFLHMQTCVFKRPTTFPRPLIFCTAIVS 296
Query: 205 CMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERM 239
++ AL KD+ D++GD+++GI++ S+ LG +R+
Sbjct: 297 IYAIVIALFKDIPDMEGDEKFGIQSLSLRLGPKRV 331
>sp|Q1ACB3|HPT2_ARATH Homogentisate phytyltransferase 2, chloroplastic OS=Arabidopsis
thaliana GN=HPT2 PE=2 SV=1
Length = 386
Score = 85.5 bits (210), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 122/242 (50%), Gaps = 22/242 (9%)
Query: 3 LGRVKSEDD--NKLKSFQAGFLKNLKSLYRFTRPNTLNGLVIAVTSICCLPL-QNLGDLT 59
+G +S+D +++ FQ + +RF RP+T+ G + T++ L +N +
Sbjct: 74 VGAAESDDPVLDRIARFQ-------NACWRFLRPHTIRGTALGSTALVTRALIENTHLIK 126
Query: 60 PTFFMETVVPAALMAI-----YMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLT 114
+ ++ + + L+A+ Y+ INQ+ D+ IDK+NKP LP+A+GD S+++ + +
Sbjct: 127 WSLVLKAL--SGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWLLVIF 184
Query: 115 CAMMS-LAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGI 173
A+ L +G G P + L L T YS+ P LR KR A + I G +
Sbjct: 185 FAIAGLLVVGFNFG-PFITSLYSLGLFLGTIYSV--PPLRMKRFPVAAFLIIATVRGFLL 241
Query: 174 QFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVM 233
F + H + LG + + F T +T +L A+ KDL DV+GD+++ I T +
Sbjct: 242 NFGVY-HATRAALGLPFQWSAPVAFITSFVTLFALVIAITKDLPDVEGDRKFQISTLATK 300
Query: 234 LG 235
LG
Sbjct: 301 LG 302
>sp|Q0D576|HPT2_ORYSJ Probable homogentisate phytyltransferase 2, chloroplastic OS=Oryza
sativa subsp. japonica GN=HPT2 PE=3 SV=2
Length = 379
Score = 83.6 bits (205), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 106/219 (48%), Gaps = 8/219 (3%)
Query: 22 LKNLK-SLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAI----Y 76
L +LK S +RF RP+T+ G + ++ L L + + + I Y
Sbjct: 80 LSDLKDSCWRFLRPHTIRGTALGSIALVARALIENPQLINWWLVFKAFYGLVALICGNGY 139
Query: 77 MTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLI 136
+ INQ+ D++IDK+NKP LP+A+GD S++T + + A ++ + P +
Sbjct: 140 IVGINQIYDIRIDKVNKPYLPIAAGDLSVQTAWLLVVLFAAAGFSIVVTNFGPFITSLYC 199
Query: 137 LWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSL 196
L L T YS+ P R KR A + I G + F + + + LG + + +
Sbjct: 200 LGLFLGTIYSV--PPFRLKRYPVAAFLIIATVRGFLLNFGVY-YATRAALGLTFQWSSPV 256
Query: 197 IFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLG 235
F T +T +L A+ KDL DV+GD++Y I T + LG
Sbjct: 257 AFITCFVTLFALVIAITKDLPDVEGDRKYQISTLATKLG 295
>sp|B1L6Z7|DGGGP_KORCO Digeranylgeranylglyceryl phosphate synthase OS=Korarchaeum
cryptofilum (strain OPF8) GN=Kcr_1480 PE=3 SV=1
Length = 281
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 88/172 (51%), Gaps = 21/172 (12%)
Query: 69 PAALMAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGS 128
P LMA AIN D +ID INKP P+ SG S + + I + ++ +A+ I +G
Sbjct: 46 PLVLMA--GNAINDYYDAEIDAINKPYRPIPSGRISKREALNIYIALSLFGIALSIFLG- 102
Query: 129 PPLAWGLILWFILVTAYSID-LPFLRWKRNAFLAAISIMIGYGVGIQFSF-FIHIQKYVL 186
+ F++VTA+S+ + RW + + +++ +G+ F+ F + L
Sbjct: 103 -------FIEFLIVTAFSLSWYAYARWLKRTGVPGNALV---SLGVAFTLIFGSLAAGNL 152
Query: 187 GRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKER 238
V+I S+ FT+ +I + +K + D+ GD+ +G+RT +V +G +R
Sbjct: 153 TNKVIIFSSVAFTSNLI------REFVKAVEDLPGDRAHGVRTIAVRIGVKR 198
>sp|A3CW74|DGGGP_METMJ Digeranylgeranylglyceryl phosphate synthase OS=Methanoculleus
marisnigri (strain ATCC 35101 / DSM 1498 / JR1)
GN=Memar_1697 PE=3 SV=1
Length = 279
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 103/218 (47%), Gaps = 24/218 (11%)
Query: 24 NLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQL 83
++ + R TRP+ N +V +T++ L G LTP + V+ AL+ IN +
Sbjct: 2 SVSAFIRITRPH--NAVVAGLTALIGY-LIATGTLTPPSLLLAVI-VALITAGGNVINDV 57
Query: 84 VDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVT 143
DV+ID+IN+PD P+ +GD S+ A + +A+ + + LA +I IL+
Sbjct: 58 RDVEIDRINRPDRPIPAGDISLAGARAYAAALFVGGIAIATLTTTLCLAIAIINSVILIV 117
Query: 144 AYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSF---FIHIQKYVLGRSVVITRSLIFTT 200
Y++ R KR L ++ + Y G F F F I+ V S+ L
Sbjct: 118 -YAV-----RLKRTPVLG--NVAVAYLAGSVFLFGGAFAGIEGLVRNLSLAAITFL---- 165
Query: 201 GVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKER 238
++A+ LLKD DVDGD G RT +++G +
Sbjct: 166 -----ATIARELLKDAEDVDGDAAGGARTLPMIVGVRK 198
>sp|Q9Z5D6|BCHG_RHOS4 Bacteriochlorophyll synthase 33 kDa chain OS=Rhodobacter
sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM
158) GN=bchG PE=4 SV=1
Length = 302
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 90/186 (48%), Gaps = 9/186 (4%)
Query: 56 GDLTPTFFMETVVPAALMAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTC 115
G+ P + V+ L+ A N D +D +N+PD P+ SG + G+ I L
Sbjct: 46 GEKWPLVLLGMVLAGPLVCGMSQAANNWCDRHVDAVNEPDRPIPSGRIPGRWGLYIALLM 105
Query: 116 AMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQF 175
++SLA+G M+G P +G + F ++ A++ + +R KR+ + + + Y G+ +
Sbjct: 106 TVLSLAVGWMLG--PWGFGATV-FGVLAAWAYSVEPIRLKRSGWWGPGLVALCY-EGLPW 161
Query: 176 SFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLG 235
+ ++T +L++ G M+ L D ++GD+++G+R+ VMLG
Sbjct: 162 FTGAAVLSAGAPSFFIVTVALLYAFGAHGIMT-----LNDFKALEGDRQHGVRSLPVMLG 216
Query: 236 KERMIK 241
E K
Sbjct: 217 PEVAAK 222
>sp|Q4J8K2|DGGGP_SULAC Digeranylgeranylglyceryl phosphate synthase OS=Sulfolobus
acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 /
NBRC 15157 / NCIMB 11770) GN=Saci_1565 PE=3 SV=1
Length = 275
Score = 65.1 bits (157), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 93/195 (47%), Gaps = 16/195 (8%)
Query: 43 AVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVKIDKINKPDLPLASGD 102
AV++ + TP FF+ +V +L+A IN + D+++DKINKP+ PL SG
Sbjct: 19 AVSAFMGYVIATTWKFTPLFFLPLLV-VSLIAAGGYVINDVYDIEVDKINKPERPLPSGR 77
Query: 103 FSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAA 162
++ ++ + L + I +G P + LI +L+ Y+ L L N +A
Sbjct: 78 IAVNIARRFSIVLFAVGLIISIPLGLIPFGFALIT-IVLLYEYARSLKKLGLVGNFIVAL 136
Query: 163 ISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGD 222
S + Y G+ +LG ++ T + F T L++ +K + D++GD
Sbjct: 137 TSALSAYYGGLA-------SGSLLGNFIIPTIYIFFFT-------LSREFVKGIEDIEGD 182
Query: 223 KEYGIRTFSVMLGKE 237
K G+ T +V LG++
Sbjct: 183 KRNGVNTLAVKLGEK 197
>sp|Q2NGM1|DGGGP_METST Digeranylgeranylglyceryl phosphate synthase OS=Methanosphaera
stadtmanae (strain DSM 3091) GN=Msp_0634 PE=3 SV=1
Length = 272
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 85/172 (49%), Gaps = 20/172 (11%)
Query: 78 TAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLIL 137
IN D +ID+IN P+ P+ SG +K + +L ++S+ +G +I S +IL
Sbjct: 49 NTINDYYDYEIDRINAPNRPIPSGKIELKRALYYSLILFLVSIILGFII-SLENGIVVIL 107
Query: 138 WFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSLI 197
IL+ Y+ DL K+ F+ + + I G+ +V G + +L
Sbjct: 108 CTILMIIYAYDL-----KQRCFIGNLCVAILTGL-----------TFVFGGLITKDVNLG 151
Query: 198 FTTGVIT-CMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKER--MIKELLNL 246
F G M+L++ ++KD+ D++GDK+ T ++ G ++ M+ +LN+
Sbjct: 152 FILGFFAFLMTLSREIIKDIEDIEGDKKEDAHTLPIIYGTKKAVMLAVILNI 203
>sp|Q12VF3|DGGGP_METBU Digeranylgeranylglyceryl phosphate synthase OS=Methanococcoides
burtonii (strain DSM 6242) GN=Mbur_1679 PE=3 SV=1
Length = 281
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 84/161 (52%), Gaps = 18/161 (11%)
Query: 80 INQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWF 139
+N D++IDK+NKP P+ SG S+K+ + +L + + + ++ PL G+I F
Sbjct: 62 LNDYFDIEIDKVNKPSRPIPSGKISLKSALYFSLFLFITGITLAFLVN--PL-CGIIALF 118
Query: 140 --ILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSLI 197
+++ Y+ L KR F S +GY G F F V G + + ++L+
Sbjct: 119 NSMVLILYAQSL-----KRTPFFGNAS--VGYLTGSTFLF----GGAVFGMAGL--QALV 165
Query: 198 FTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKER 238
+ T ++A+ ++KD+ D+ GDK+ G RT +++G ++
Sbjct: 166 VLFLLATLATIAREIVKDVEDIVGDKKDGARTLPILIGAKK 206
>sp|Q3INH7|DGGGP_NATPD Digeranylgeranylglyceryl phosphate synthase OS=Natronomonas
pharaonis (strain DSM 2160 / ATCC 35678) GN=NP_4470A
PE=3 SV=1
Length = 277
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 87/184 (47%), Gaps = 23/184 (12%)
Query: 79 AINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILW 138
AIN D ID IN+PD P+ G S + A+ + A+ ++A+ + + L+ W
Sbjct: 55 AINDYFDRDIDAINEPDRPIPRGAVSPRG--ALVYSVALFAVAVVLTL--------LLPW 104
Query: 139 FILVTAYSIDLPFLRWKRNAFLAAISIMIGY-GVGIQFSFFIHIQKYVLGRSVVIT--RS 195
+ A +I+L A +A + G GVG ++ ++ G + V +
Sbjct: 105 LAIAIA-AINL-------VALVAYTEVFKGLPGVGNALVAYLTGSTFLYGGAAVGGDLAA 156
Query: 196 LIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDLEDE 255
++ + C ++A+ ++KD+ D+DGD+ G+RT +++G+ R + L
Sbjct: 157 VVVLFALAACATMAREIVKDVEDIDGDRAEGLRTLPIVIGERRSLYVAAGFVVVAVL--S 214
Query: 256 SPLP 259
SPLP
Sbjct: 215 SPLP 218
>sp|O57753|DGGGP_PYRHO Digeranylgeranylglyceryl phosphate synthase OS=Pyrococcus
horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 /
NBRC 100139 / OT-3) GN=PH0027 PE=3 SV=1
Length = 277
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 80/163 (49%), Gaps = 24/163 (14%)
Query: 80 INQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWF 139
IN DV+IDKIN+P+ P+ G + K + + L + +++G + L +F
Sbjct: 56 INDYFDVEIDKINRPNRPIPRGAITRKAAFYYGVLQYFIGLIIALLLGWSAFLFALGAYF 115
Query: 140 I-LVTAYSID-LPFLRWKRNAFLAAISIMIG-YGVG-IQFSFFIHIQKYVLGRSVVITRS 195
+ V A+ + LPF+ A L A + + G GVG I + ++ I ++
Sbjct: 116 LTFVYAWKLKPLPFIGNVTVALLTAATPIYGAVGVGRIDLAGYLAICAFL---------- 165
Query: 196 LIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKER 238
+++++ ++KD+ D +GDK G RT +M+GK++
Sbjct: 166 ----------VNVSREIMKDIEDFEGDKRLGARTLPIMIGKKK 198
>sp|C5A1J7|DGGGP_THEGJ Digeranylgeranylglyceryl phosphate synthase OS=Thermococcus
gammatolerans (strain DSM 15229 / JCM 11827 / EJ3)
GN=TGAM_1764 PE=3 SV=1
Length = 276
Score = 54.7 bits (130), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 102/218 (46%), Gaps = 24/218 (11%)
Query: 24 NLKSLYRFTRPN--TLNGLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAIN 81
L++ TRP+ L GLV + S+ L G + F+ + A IN
Sbjct: 2 ELRAFVEITRPHNCALAGLVGVLGSMVALGSVPEGKILILVFLVVSLGCA----GGNTIN 57
Query: 82 QLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFIL 141
D +ID+IN+P+ PL G +T + +L + LA+ ++I A+ L L +I
Sbjct: 58 DYFDYEIDRINRPERPLPRGAMDRRTALWYSLFLFAVGLALALLISLKAFAFAL-LAYIT 116
Query: 142 VTAYSIDLPFLRWKRNAFLAAIS-IMIGYGVGIQFSFFIHIQKYVLGRSVVITRSLIFTT 200
+ Y+ L L + N +AA++ + YG I + K L ++ + L+
Sbjct: 117 MFLYAWKLKPLPFIGNIAVAALTGVTPLYGA-------IAVGKIGLAGTLAVCAFLV--- 166
Query: 201 GVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKER 238
++A+ ++KD+ DV+GD + G +T ++LG+ +
Sbjct: 167 ------NVAREIVKDIEDVEGDLKKGAKTLPIILGRRK 198
>sp|Q8TWS9|DGGGP_METKA Digeranylgeranylglyceryl phosphate synthase OS=Methanopyrus
kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC
100938) GN=MK0953 PE=3 SV=1
Length = 271
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 68/159 (42%), Gaps = 16/159 (10%)
Query: 78 TAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLIL 137
AIN D ++D +N+PD P+ SG S ++ L C + + M +I LA
Sbjct: 50 NAINDYFDAEVDAVNRPDRPIPSGRVSPRSARMFALGCFAVGVGMATVINRMCLA----- 104
Query: 138 WFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSLI 197
+ S+ L W+ ++M+ Y VG F F + + +
Sbjct: 105 ---IAALNSVLLYLYSWRLKGTPLIGNVMVSYLVGSCFLFGAAVGQR--------PAPAV 153
Query: 198 FTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGK 236
+ + +L + +LKDL DV+GD G++T + G+
Sbjct: 154 WLFLLAFLANLVREILKDLEDVEGDAALGLKTLPIAYGE 192
>sp|Q9V2P5|DGGGP_PYRAB Digeranylgeranylglyceryl phosphate synthase OS=Pyrococcus abyssi
(strain GE5 / Orsay) GN=PYRAB00300 PE=3 SV=2
Length = 277
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 79/163 (48%), Gaps = 24/163 (14%)
Query: 80 INQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILW- 138
IN DV+ID++N+P+ P+ G K + L M+ LA+ +G L + L +
Sbjct: 56 INDYFDVEIDRVNRPNRPIPRGAIPRKVALYYALLQYMLGLALARFLGVEALLFALGAYA 115
Query: 139 FILVTAYSID-LPFLRWKRNAFLAAISIMIG-YGVG-IQFSFFIHIQKYVLGRSVVITRS 195
+ A+ + LPF+ A L A + + G GVG + + ++ I ++
Sbjct: 116 LTFIYAWKLKPLPFIGNVAVALLTAATPIYGALGVGRVGLAGYLAICAFL---------- 165
Query: 196 LIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKER 238
+++++ ++KD+ D++GD + G +T +++GK R
Sbjct: 166 ----------VNVSREIMKDIEDIEGDMKMGAKTLPIIIGKRR 198
>sp|O27170|DGGGP_METTH Digeranylgeranylglyceryl phosphate synthase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_1098 PE=1 SV=1
Length = 281
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 74/158 (46%), Gaps = 20/158 (12%)
Query: 80 INQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLA--MGIMIGSPPLAWGLIL 137
IN D +ID IN+P+ P+ SG I GVA + + +LA MG +G P GL+
Sbjct: 51 INDYFDHEIDAINRPERPIPSGR--ISRGVAGVYSIILFALASLMGFYLGLLP---GLV- 104
Query: 138 WFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSLI 197
V + S+ + + W+ +I I + G+ F F VLG R+ I
Sbjct: 105 ----VVSSSLLMVYYAWRLKKRCLVGNITISFLTGLSFVF----GGIVLGE----VRASI 152
Query: 198 FTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLG 235
M++A+ ++KD+ DV+GD+ G T + G
Sbjct: 153 LLGFYAFLMTMAREIVKDMEDVEGDRAEGATTLPITHG 190
>sp|B6YW76|DGGGP_THEON Digeranylgeranylglyceryl phosphate synthase OS=Thermococcus
onnurineus (strain NA1) GN=TON_1950 PE=3 SV=1
Length = 276
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 94/219 (42%), Gaps = 26/219 (11%)
Query: 24 NLKSLYRFTRPNT--LNGLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAIN 81
LK+ TRP+ L G+V + SI L + D + VV IN
Sbjct: 2 ELKAFIEITRPHNCILAGIVGLLGSIVAL--GHFPDPKTALLIFLVVTVGCAG--GNTIN 57
Query: 82 QLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWF-I 140
D +IDKIN+P+ PL G K + ++ + LA+ MI G+I + +
Sbjct: 58 DYFDYEIDKINRPERPLPRGAMGRKVALYYSMLLFAVGLALAYMINIYAFILGVIAYVTM 117
Query: 141 LVTAYSID-LPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSLIFT 199
+ A+ + LPF+ A L + + G + ++ L + I L+
Sbjct: 118 FIYAWKLKPLPFVGNIVVAGLTGATPLYGA---------VAVEHLGLAGYLAICAFLV-- 166
Query: 200 TGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKER 238
++A+ ++KD+ DV+GD G +T ++ GK+R
Sbjct: 167 -------NVAREVIKDIEDVEGDMAKGAKTLPIIWGKKR 198
>sp|Q971A3|DGGGP_SULTO Digeranylgeranylglyceryl phosphate synthase OS=Sulfolobus tokodaii
(strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
GN=STK_14510 PE=3 SV=1
Length = 278
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 76/162 (46%), Gaps = 19/162 (11%)
Query: 80 INQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWF 139
IN + D++IDKINKP+ PL SG I ++++ ++ + + +++ + I+
Sbjct: 56 INDVFDIEIDKINKPNRPLPSGRIKISRARSLSIVLFLVGIVLSVLLN----IYAFIIAL 111
Query: 140 ILVTA---YSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSL 196
+ V A Y+ DL N +A S + + G+ F + R+L
Sbjct: 112 LTVLALYYYAKDLKKQGLVGNLIVALTSALSAFYGGLAFF-----------EGSWVIRTL 160
Query: 197 IFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKER 238
I T I +L + +K + DV GD G++T +V +G E+
Sbjct: 161 I-PTLYIFFFTLTREFVKGIEDVKGDMTNGVKTLAVRVGIEK 201
>sp|A6UVU6|DGGGP_META3 Digeranylgeranylglyceryl phosphate synthase OS=Methanococcus
aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=Maeo_1040
PE=3 SV=1
Length = 279
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 89/185 (48%), Gaps = 26/185 (14%)
Query: 78 TAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLIL 137
A+N + D++IDKINKP+ PL S S+K+ + + + GI+I + +I
Sbjct: 57 NALNDIQDIEIDKINKPNRPLPSNKISLKSATIFS----YLLMISGIIIS----LFNMIC 108
Query: 138 WFI-LVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSV--VITR 194
+ I L+ + + L ++KRN + ++++ Y G F F G SV V
Sbjct: 109 FAIALINSIVLYLYAKKYKRNKIIG--NLIVAYLTGSIFIFG--------GASVGNVEIT 158
Query: 195 SLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDLED 254
++F + S + ++KD D+DGDK G+ + + GK + + L ++ L
Sbjct: 159 LILFLCALFATWS--REIIKDYEDLDGDKSEGVISLPIKYGKNSIFVAIGFLLCSILL-- 214
Query: 255 ESPLP 259
SPLP
Sbjct: 215 -SPLP 218
>sp|Q2FN44|DGGGP_METHJ Digeranylgeranylglyceryl phosphate synthase OS=Methanospirillum
hungatei (strain JF-1 / DSM 864) GN=Mhun_0625 PE=3 SV=1
Length = 280
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 78/174 (44%), Gaps = 39/174 (22%)
Query: 80 INQLVDVKIDKINKPDLPLASGD-------------FSIKTGVAITLTCAMMSLAMGIMI 126
IN D +ID IN+PD P+ SG F I G+AI T ++ GI +
Sbjct: 54 INDYYDKEIDAINQPDRPIPSGQIIPGHALMYAILLFLIGNGIAILFTPLPLA---GIAM 110
Query: 127 GSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVL 186
G+ +ILW L ++ P + ++LAA SI + +G IQ
Sbjct: 111 GNS-----VILW--LYASFLKKTPLIGNISVSYLAA-SIFL-FGGAIQ------------ 149
Query: 187 GRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMI 240
G +I S+ G + LA+ L+KD D+ GD E+G RTF ++ G I
Sbjct: 150 GTQGII--SVFPIAGATWGVMLARELIKDAEDMPGDNEHGARTFPLLYGIRATI 201
>sp|A0B8A0|DGGGP_METTP Digeranylgeranylglyceryl phosphate synthase OS=Methanosaeta
thermophila (strain DSM 6194 / PT) GN=Mthe_1142 PE=3
SV=1
Length = 267
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 71/161 (44%), Gaps = 16/161 (9%)
Query: 78 TAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLIL 137
AIN D +ID +N+PD P+ SG S + + ++ + + +I LA L+
Sbjct: 51 NAINDYFDREIDAVNRPDRPIPSGRISPRAALIWSVALFIAGCLIAGLINQSCLALALLN 110
Query: 138 WFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSLI 197
F+L+ Y+ L L N I I Y G F F G + +
Sbjct: 111 SFVLII-YAARLKGLPVAGN-------IAISYLTGTTFLFG--------GLAASPSSITA 154
Query: 198 FTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKER 238
F + + +L++ ++KD+ D+ GD +G +T +GK +
Sbjct: 155 FLSILSALATLSREIVKDIEDLPGDLAHGAKTLPAFIGKRK 195
>sp|A5ULR8|DGGGP_METS3 Digeranylgeranylglyceryl phosphate synthase OS=Methanobrevibacter
smithii (strain PS / ATCC 35061 / DSM 861) GN=Msm_0941
PE=3 SV=1
Length = 283
Score = 47.8 bits (112), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 69/158 (43%), Gaps = 8/158 (5%)
Query: 80 INQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWF 139
IN D KID INKP P+ SG S+ +++ +G +I W +
Sbjct: 51 INDYFDYKIDLINKPQRPIPSGRISLDNAKNYAYLLFILAAIVGFLISCLVDTW---IPC 107
Query: 140 ILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSLIFT 199
+V I L +K + ++ +G+ G+ F F Y ++I S +
Sbjct: 108 TIVIFSDIILYLYAYKLKSTPLIGNLTVGFMTGLCFIF----AGYTFNEGLIIYESYLLA 163
Query: 200 TGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKE 237
+ M+ A+ + KD+ D++GD G +TF ++ G +
Sbjct: 164 FFALI-MTTAREITKDIEDMEGDMAEGAKTFPILYGPK 200
>sp|Q5JDN5|DGGGP_PYRKO Digeranylgeranylglyceryl phosphate synthase OS=Pyrococcus
kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
GN=TK1957 PE=3 SV=1
Length = 277
Score = 47.8 bits (112), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 76/162 (46%), Gaps = 22/162 (13%)
Query: 80 INQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILW- 138
IN D +IDKIN+P+ PL G S K L ++ A GI+ LAW + +W
Sbjct: 56 INDYFDYEIDKINRPERPLPRGAMSRKA----ALWYSVALFATGIV-----LAWFINIWD 106
Query: 139 FILVTAYSIDLPFLRWKRNA--FLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSL 196
F+L + + WK F+ + + G + I + + L ++ + L
Sbjct: 107 FLLAIVAYVTMFIYAWKLKPMPFIGNVVVASLTGATPLYGA-IAVGEIGLAGTLALCAFL 165
Query: 197 IFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKER 238
+ ++A+ ++KD+ D++GD G +T +++G++R
Sbjct: 166 V---------NVAREVIKDIEDIEGDMAKGAKTLPILIGRKR 198
>sp|A7I9E7|DGGGP_METB6 Digeranylgeranylglyceryl phosphate synthase OS=Methanoregula boonei
(strain 6A8) GN=Mboo_1843 PE=3 SV=1
Length = 279
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 75/163 (46%), Gaps = 22/163 (13%)
Query: 80 INQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGL-ILW 138
IN D ID IN+PD P+ SG S +A + ++ LA+ + + PL G+ ++
Sbjct: 54 INDYFDAAIDTINRPDRPIPSGAVSRNAALAWAFSLFLLGLAVSVF--TTPLCMGIALVN 111
Query: 139 FILVTAYSIDL---PFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRS 195
+L+ Y+ L PF AFL+A S F+ Y +++
Sbjct: 112 ALLLVLYAARLKSTPFFGNAAVAFLSA-------------SIFLFGGAYAGWHALL---D 155
Query: 196 LIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKER 238
++ + LA+ LLKD D++GD+ +G T ++ +G +
Sbjct: 156 MLPIAAITFLAMLARELLKDAEDIEGDRAHGADTLAIRIGVRK 198
>sp|Q9UWY6|DGGGP_SULSO Digeranylgeranylglyceryl phosphate synthase OS=Sulfolobus
solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 /
P2) GN=ubiA-2 PE=1 SV=1
Length = 282
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 72/159 (45%), Gaps = 13/159 (8%)
Query: 80 INQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWF 139
IN + DV+IDKINKP P+ SG S+ A+++ ++ +A+ I++ L L+
Sbjct: 56 INDVYDVEIDKINKPYRPIPSGKISVNKAKALSIALFIIGIALSILLNIYALVIALVTAI 115
Query: 140 ILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSLIFT 199
L+ Y+ DL K+ F + + + I + L R ++ T F
Sbjct: 116 GLIY-YAKDL-----KKTGFYGNLLVATTTALSIFYGGLAFFSDNWLLRIIIPTLYAFFL 169
Query: 200 TGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKER 238
T L + ++K + D +GD ++T + LG +
Sbjct: 170 T-------LIREIVKGIEDYNGDSLNNVKTLATTLGINK 201
>sp|A2SRL0|DGGGP_METLZ Digeranylgeranylglyceryl phosphate synthase OS=Methanocorpusculum
labreanum (strain ATCC 43576 / DSM 4855 / Z)
GN=Mlab_0795 PE=3 SV=1
Length = 282
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 78/162 (48%), Gaps = 20/162 (12%)
Query: 80 INQLVDVKIDKINKPDLPLASGDFSIKTGV--AITLTCAMMSLAMGIMIGSPPLAWGLIL 137
+N D++IDK+N+PD P+ SG S K V A L A ++ A I +A ++
Sbjct: 54 LNDYFDLEIDKVNRPDRPIPSGKVSPKGAVVWAGILFAAGVAAACFTNIWCLAIALVNVV 113
Query: 138 WFILVTAYSIDLPFLRWKRNAFLA-AISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSL 196
I+ A +PFL A+L+ +I + G+ VG + SF + + + +
Sbjct: 114 LLIIYAAKFKGIPFLGNLSVAYLSGSIFLFGGFLVGPE-SFLVMLPLFAI---------T 163
Query: 197 IFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKER 238
F T LA+ LLKD D++GD+ G RT + +G +
Sbjct: 164 FFGT-------LARELLKDAEDIEGDRLGGARTLPMQIGVRK 198
>sp|P26170|BCHG_RHOCB Bacteriochlorophyll synthase 33 kDa chain OS=Rhodobacter capsulatus
(strain ATCC BAA-309 / NBRC 16581 / SB1003) GN=bchG PE=4
SV=1
Length = 304
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 77/172 (44%), Gaps = 24/172 (13%)
Query: 79 AINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILW 138
A N D +D IN+P P+ SG G+ I + +++SL +G +GS WG +
Sbjct: 70 AANDWCDRHVDAINEPHRPIPSGRIPGLWGLYIAIAMSLLSLVVGWQLGS----WGFVAT 125
Query: 139 FI-LVTAYSIDLPFLRWKRNAFLAAISIMIGYG-VGIQFSFFIHIQKYVLGRSVVITRSL 196
+ + A++ + +R KR+ + G G VG+ + ++ G +V++ +
Sbjct: 126 LLGVAAAWAYSVEPIRLKRSGWW-------GPGLVGLAYEGL----PWITGAAVLLATAD 174
Query: 197 IFTTGVITCMSLAKAL-------LKDLHDVDGDKEYGIRTFSVMLGKERMIK 241
I M+ AL + D ++GD++ GI++ + G E K
Sbjct: 175 TSPGFPIVMMATLYALGAHGIMTINDFKAIEGDRKLGIKSLPAVYGPEVAAK 226
>sp|A4YI21|DGGGP_METS5 Digeranylgeranylglyceryl phosphate synthase OS=Metallosphaera
sedula (strain ATCC 51363 / DSM 5348) GN=Msed_1933 PE=3
SV=1
Length = 284
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 60 PTFFMETVVPAALMAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMS 119
PT + V+ AL+ AIN + DV+ID+INKPD P+ SG S++T A +L+ +M
Sbjct: 34 PTELILAVLVVALVDAGGNAINDVYDVEIDRINKPDRPIPSGAVSLRT--ATSLSYGLMG 91
Query: 120 LAM 122
+ +
Sbjct: 92 VGV 94
>sp|Q46BD9|DGGGP_METBF Digeranylgeranylglyceryl phosphate synthase OS=Methanosarcina
barkeri (strain Fusaro / DSM 804) GN=Mbar_A1863 PE=3
SV=1
Length = 289
Score = 44.7 bits (104), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 72/168 (42%), Gaps = 28/168 (16%)
Query: 78 TAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTC----AMMSLAMGIMIGSPPLAW 133
AIN DV+ID IN+PD P+ SG +K + + T +++ ++ + G L
Sbjct: 68 NAINDYFDVRIDSINRPDRPIPSGRMKLKEALYFSYTLFALGTLLAFSINPICGVIALFN 127
Query: 134 GLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVIT 193
L+L F T K L +S IGY G F F G SV
Sbjct: 128 SLVLIFYAKT----------LKGTPLLGNLS--IGYLTGSSFLF---------GASVFGL 166
Query: 194 RSLIFTTGVITCMSL---AKALLKDLHDVDGDKEYGIRTFSVMLGKER 238
L + +L A+ ++KD+ D++GDK G T + +G ++
Sbjct: 167 EGLKALFVLFLLAALAITAREIVKDIEDMEGDKMEGADTLPLRVGAKK 214
>sp|Q9HRP0|DGGGP_HALSA Digeranylgeranylglyceryl phosphate synthase OS=Halobacterium
salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
GN=VNG_0610G PE=3 SV=2
Length = 276
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 72/165 (43%), Gaps = 20/165 (12%)
Query: 78 TAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLIL 137
AIN D ++D+IN PD + G S + +A ++ + +G+ LA L +
Sbjct: 55 NAINDYFDREVDRINDPDRAIPRGAVSPRGALAYSVV---------LFVGAAALAATLPV 105
Query: 138 WFILVTAYSIDLPFLRWKRNAFLAAISIMIGY-GVGIQFSFFIHIQKYVLGRSVVITRSL 196
+ + A ++ L + G G G ++ +V G + V +
Sbjct: 106 LAVCIAALNL---------AGLLTYTQYLKGRPGAGNALVAYLGGSTFVFGAAAVGSPLA 156
Query: 197 IFTTGVITCMS-LAKALLKDLHDVDGDKEYGIRTFSVMLGKERMI 240
+ +S A+ ++KD+ D+ GD+ G+RT V++G +R +
Sbjct: 157 GGVLAALAALSTFAREVIKDVEDLAGDRAAGLRTLPVVVGHQRAL 201
>sp|B0R3S1|DGGGP_HALS3 Digeranylgeranylglyceryl phosphate synthase OS=Halobacterium
salinarum (strain ATCC 29341 / DSM 671 / R1) GN=OE_1921R
PE=3 SV=1
Length = 276
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 72/165 (43%), Gaps = 20/165 (12%)
Query: 78 TAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLIL 137
AIN D ++D+IN PD + G S + +A ++ + +G+ LA L +
Sbjct: 55 NAINDYFDREVDRINDPDRAIPRGAVSPRGALAYSVV---------LFVGAAALAATLPV 105
Query: 138 WFILVTAYSIDLPFLRWKRNAFLAAISIMIGY-GVGIQFSFFIHIQKYVLGRSVVITRSL 196
+ + A ++ L + G G G ++ +V G + V +
Sbjct: 106 LAVCIAALNL---------AGLLTYTQYLKGRPGAGNALVAYLGGSTFVFGAAAVGSPLA 156
Query: 197 IFTTGVITCMS-LAKALLKDLHDVDGDKEYGIRTFSVMLGKERMI 240
+ +S A+ ++KD+ D+ GD+ G+RT V++G +R +
Sbjct: 157 GGVLAALAALSTFAREVIKDVEDLAGDRAAGLRTLPVVVGHQRAL 201
>sp|Q8TZM7|DGGGP_PYRFU Digeranylgeranylglyceryl phosphate synthase OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
GN=PF1963 PE=3 SV=1
Length = 277
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 76/171 (44%), Gaps = 42/171 (24%)
Query: 81 NQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFI 140
N D +IDKIN+P+ PL G S + L A++ A+G + LA+ L +
Sbjct: 57 NDYFDYEIDKINRPNRPLPRGAMSRRA----ALYYALLQYAIGSI-----LAYFLNIRAF 107
Query: 141 LVTAYSIDLPFLR-WKRN-----------AFLAAISIMIGYGVG-IQFSFFIHIQKYVLG 187
+ + L FL WK A AA I GVG I + ++ I ++
Sbjct: 108 VFATIAYFLTFLYGWKLKPLPLVGNITVAALTAATPIYGAIGVGRIGLAGYLAICAFL-- 165
Query: 188 RSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKER 238
+++++ ++KD+ D++GDK G RT +++G+++
Sbjct: 166 ------------------VNVSREIMKDIEDIEGDKALGARTLPIIIGEKK 198
>sp|P33326|BCHG_CHLAA Bacteriochlorophyll synthase 34 kDa chain OS=Chloroflexus
aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl)
GN=bchG PE=4 SV=2
Length = 310
Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 72/157 (45%), Gaps = 11/157 (7%)
Query: 80 INQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWF 139
+N D ++D IN+P + SG S++ +T + ++ + +G +A+ + L
Sbjct: 85 VNDYADREVDAINEPHRLIPSGQVSLRHVYILTAVLTWIGASIALFLGRQ-VAFFVALGL 143
Query: 140 ILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSLIFT 199
+ AYS L +R KRN ++ + I Y G+ + + G SV I +L+++
Sbjct: 144 VFALAYS--LRPIRGKRNGWIGNALVAISYE-GLAWMAGHAAFAPLTGESVTI--ALLYS 198
Query: 200 TGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGK 236
G M++ D + GD GIR+ V GK
Sbjct: 199 LGAHGIMTV-----NDFKSIRGDTIMGIRSIPVQYGK 230
>sp|C6A2C9|DGGGP_THESM Digeranylgeranylglyceryl phosphate synthase OS=Thermococcus
sibiricus (strain MM 739 / DSM 12597) GN=TSIB_0711 PE=3
SV=1
Length = 279
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 72/161 (44%), Gaps = 22/161 (13%)
Query: 80 INQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWF 139
IN D +IDKIN+P+ PL G S + ++ +++ + +I + L +
Sbjct: 56 INDYFDYEIDKINRPNRPLPRGALSKNIALVYGISLGGVAILIAYLINFEAFIFALGA-Y 114
Query: 140 ILVTAYSIDL---PFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSL 196
+L+ Y+ L PF+ A L I+ + G I + K L + + L
Sbjct: 115 LLMYLYARKLKPQPFIGNLVVATLTGITPIYGA---------IAVGKIGLAGYLALCAFL 165
Query: 197 IFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKE 237
+ ++A+ + KD+ D++GDK G +T ++ G E
Sbjct: 166 V---------NVAREIFKDIEDIEGDKAQGAKTLPIVWGIE 197
>sp|Q8PV96|DGGGP_METMA Digeranylgeranylglyceryl phosphate synthase OS=Methanosarcina mazei
(strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833
/ OCM 88) GN=MM_2075 PE=3 SV=2
Length = 289
Score = 40.4 bits (93), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 72/162 (44%), Gaps = 16/162 (9%)
Query: 78 TAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLIL 137
AIN D+KID IN+P+ P+ SG +K A + + +L I + + L
Sbjct: 68 NAINDYFDIKIDSINRPERPIPSG--RVKAKEAFYFSYLLFALGTLIAFSINSICGSIAL 125
Query: 138 W-FILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSL 196
+ +L+ Y+ L K L +S IGY G F F + G + S+
Sbjct: 126 FNSLLLILYAKTL-----KGTPLLGNLS--IGYLTGSVFLF----GASIFGFGGIKALSV 174
Query: 197 IFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKER 238
+F + A+ ++KD+ D++GD G T + +G ++
Sbjct: 175 LFLLAALAIT--AREIVKDIEDMEGDSLEGADTLPLRIGAKK 214
>sp|A8A9J7|DGGGP_IGNH4 Digeranylgeranylglyceryl phosphate synthase OS=Ignicoccus
hospitalis (strain KIN4/I / DSM 18386 / JCM 14125)
GN=Igni_0416 PE=3 SV=2
Length = 303
Score = 40.0 bits (92), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 75/160 (46%), Gaps = 15/160 (9%)
Query: 81 NQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFI 140
N DV+IDK+NKP+ P+ SG + + L + +G+ +G A+ L +
Sbjct: 58 NDYFDVEIDKVNKPERPIPSGRVGAEEARKLALALLALGPLLGLAVGPLTGAYA-ALNAV 116
Query: 141 LVTAYSIDLPFLRWKRN---AFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSLI 197
L+ YS L N +F A +++ G +++ G + R++
Sbjct: 117 LMYYYSKSLKKTGLPGNLAVSFSTASTLLYGSLATAEWA----------GEVARVLRTIP 166
Query: 198 FTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKE 237
++ M+LA+ ++K + D GDKE G++T +V+ G +
Sbjct: 167 IIL-MVFLMTLAREVVKGVEDYVGDKEGGVKTLAVVKGPD 205
>sp|Q18J00|DGGGP_HALWD Digeranylgeranylglyceryl phosphate synthase OS=Haloquadratum
walsbyi (strain DSM 16790) GN=HQ_1884A PE=3 SV=1
Length = 286
Score = 37.7 bits (86), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 76/162 (46%), Gaps = 24/162 (14%)
Query: 79 AINQLVDVKIDKINKPDLPLASGDFSIKTGVAIT---LTCAMMSLAMGIMIGSPPLAWGL 135
AIN D IDKIN+P P+ G S + + + A++S ++ P +A L
Sbjct: 61 AINDYFDRAIDKINRPMRPIPRGAISERGAIVFSGFLFVAAVVSTSV-----LPLIAIVL 115
Query: 136 ILWFIL-VTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITR 194
L +L + AY+ L NA +A Y G F F +GR IT
Sbjct: 116 ALMNLLALVAYTELFKGLPGVGNAIVA-------YLTGSTFLF----GAAAIGR---ITD 161
Query: 195 SLIFTTGVITCMSLA-KALLKDLHDVDGDKEYGIRTFSVMLG 235
+ ++ ++ A + ++KD+ D+DGD++ G++T +++G
Sbjct: 162 FGVVVLFILAALATATREIIKDIEDLDGDRKEGLQTLPIVIG 203
>sp|Q3IHW5|UBIA_PSEHT 4-hydroxybenzoate octaprenyltransferase OS=Pseudoalteromonas
haloplanktis (strain TAC 125) GN=ubiA PE=3 SV=1
Length = 292
Score = 37.0 bits (84), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 101/223 (45%), Gaps = 20/223 (8%)
Query: 27 SLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDV 86
+L R +P + L++ + L L N G + T F+ + +M IN D
Sbjct: 16 ALMRIDKP--IGTLLLLWPTYWALWLANAGMPSLTNFIVFTLGVVIMRSAGCVINDFADR 73
Query: 87 KIDKINKPDL--PLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTA 144
KID K + PL SG S +G AI+L ++++A +++ L+ IL A
Sbjct: 74 KIDGSVKRTMQRPLVSGQVS--SGEAISLFILLITVAFLLVL---MLSVNTILLSFGALA 128
Query: 145 YSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVIT 204
+ PF+ KR L + + +G I +F I ++ I L+F +
Sbjct: 129 LAFCYPFM--KRYTQLPQVVLGAAFGWAIPMAFMASIN------ALPIQAWLLFIANI-- 178
Query: 205 CMSLAKALLKDLHDVDGDKEYGIRTFSVMLGK-ERMIKELLNL 246
C ++A + + D D D + G+++ +++ GK +R I LLNL
Sbjct: 179 CWTVAYDTMYAMVDRDDDLKIGVKSTAILFGKYDRHIIGLLNL 221
>sp|B1MC66|COXX_MYCA9 Protoheme IX farnesyltransferase OS=Mycobacterium abscessus (strain
ATCC 19977 / DSM 44196) GN=ctaB PE=3 SV=1
Length = 313
Score = 36.6 bits (83), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 18/121 (14%)
Query: 21 FLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAI 80
FL+ + + T+P + L+ VT+I + L + GD+ P + T++ + A +
Sbjct: 19 FLRTILAYIALTKPRVIELLL--VTTIPAMLLADRGDVNPLLILNTLLGGVMAAASANTL 76
Query: 81 NQLVDVKIDKINK--PDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILW 138
N + D IDK+ K PLA + + +L G+++G AW LW
Sbjct: 77 NCVADADIDKVMKRTARRPLAMSSVTTRN-----------ALIFGVVLGVGAFAW---LW 122
Query: 139 F 139
+
Sbjct: 123 W 123
>sp|Q57727|DGGGP_METJA Digeranylgeranylglyceryl phosphate synthase OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0279 PE=3 SV=1
Length = 283
Score = 36.2 bits (82), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 71/164 (43%), Gaps = 16/164 (9%)
Query: 76 YMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGL 135
Y IN + D++ID+INKP PL SG + + ++ L + + I
Sbjct: 57 YGNVINDIFDIEIDRINKPSRPLPSGKIKLNEAKKFSAILLILGLVLSLFIN-------- 108
Query: 136 ILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRS 195
I I+ ++ L K + + +IGY G F F K V+ ++ S
Sbjct: 109 IYALIIAVINALFLYLYAKKYKKYKPIGNFIIGYLTGSVFLFGGVAGKNVMPVVILFLCS 168
Query: 196 LIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERM 239
L+ G + ++KD D++GDK+ G+ + + GK+ +
Sbjct: 169 LLSIWG--------REIVKDFEDMEGDKKEGVISLPIKYGKKSL 204
>sp|Q8TS44|DGGGP_METAC Digeranylgeranylglyceryl phosphate synthase OS=Methanosarcina
acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /
C2A) GN=MA_0961 PE=3 SV=1
Length = 289
Score = 35.4 bits (80), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 70/163 (42%), Gaps = 18/163 (11%)
Query: 78 TAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLIL 137
AIN D+KID IN+P+ P+ SG K + + + I S GLI
Sbjct: 68 NAINDYFDIKIDSINRPERPIPSGRVQAKEALYFSYLLFAAGTLLAFSINS---ICGLIA 124
Query: 138 WF--ILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRS 195
F +L+ Y+ L K L +S IGY G F F V G + T
Sbjct: 125 LFNSLLLILYAKTL-----KGTPLLGNLS--IGYLTGSVFLF----GASVFGLEGLKTLF 173
Query: 196 LIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKER 238
++F + A+ ++KD+ D++GD+ T + +G ++
Sbjct: 174 VLFLLAALAIT--AREIVKDIEDMEGDRLEDADTLPLRIGAKK 214
>sp|Q3MFT6|COXX_ANAVT Protoheme IX farnesyltransferase OS=Anabaena variabilis (strain
ATCC 29413 / PCC 7937) GN=ctaB PE=3 SV=1
Length = 318
Score = 35.0 bits (79), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 47/115 (40%), Gaps = 4/115 (3%)
Query: 10 DDNKLKSFQAGFLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMETVVP 69
+ N + FL+ ++S Y+ T+P + L+I + Q G + P + T+
Sbjct: 3 ETNVSRRHHESFLQVIQSYYQLTKPRIIPLLLITTAGSMWIAAQ--GQVDPVLLLVTMAG 60
Query: 70 AALMAIYMTAINQLVDVKIDK--INKPDLPLASGDFSIKTGVAITLTCAMMSLAM 122
L A IN + D ID P+ SG ++ + + A++S +
Sbjct: 61 GTLAAASAQTINCIYDRDIDYDMERTRHRPMPSGKVQVRDALIFAIALAVLSFTL 115
>sp|Q0VN94|CYOE_ALCBS Protoheme IX farnesyltransferase OS=Alcanivorax borkumensis (strain
SK2 / ATCC 700651 / DSM 11573) GN=cyoE PE=3 SV=1
Length = 303
Score = 34.7 bits (78), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 2/104 (1%)
Query: 32 TRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVKIDKI 91
T+P + L++ + L + G + F+ V +L + AINQ++D KID I
Sbjct: 14 TKPGVVMLLMVTAVAGMFLATEPAGMVPLATFIPAFVGLSLAMMASAAINQIMDQKIDAI 73
Query: 92 NK--PDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAW 133
K PL +G + K + + A S+ M + +P AW
Sbjct: 74 MKRTEKRPLVAGKLTPKAAITFAVLLATASMIMLYFLVNPLTAW 117
>sp|A6VHU1|DGGGP_METM7 Digeranylgeranylglyceryl phosphate synthase OS=Methanococcus
maripaludis (strain C7 / ATCC BAA-1331) GN=MmarC7_0950
PE=3 SV=1
Length = 278
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 8/59 (13%)
Query: 55 LGDLTPTFF-METVVPAALMAI-------YMTAINQLVDVKIDKINKPDLPLASGDFSI 105
+G L ++F + TV L +I + A+N + D+KIDKINKP+ P+ S S+
Sbjct: 24 IGGLIASYFNLATVYDLILASIVVFLVCGFGNALNDIYDLKIDKINKPERPIPSKRLSL 82
>sp|P38206|RFT1_YEAST Oligosaccharide translocation protein RFT1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RFT1 PE=1
SV=1
Length = 574
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 57/114 (50%), Gaps = 14/114 (12%)
Query: 130 PLAWGLILW-FILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGR 188
PL+ GLI W + + AY I LPF RW + FL +SI++ + FFI + +++L
Sbjct: 123 PLSIGLIAWQYRNINAYFITLPFFRW--SIFLIWLSIIVEL---LSEPFFI-VNQFMLNY 176
Query: 189 SVVIT-RSLIFTTGVITCMSLAKALLKDLHDV-----DGDKEYGIRTFSVMLGK 236
+ S+ TTG I + A+ + + + D DKE GI + LGK
Sbjct: 177 AARSRFESIAVTTGCIVNFIVVYAVQQSRYPMGVVTSDIDKE-GIAILAFALGK 229
>sp|Q12IC7|CYOE_SHEDO Protoheme IX farnesyltransferase OS=Shewanella denitrificans
(strain OS217 / ATCC BAA-1090 / DSM 15013) GN=cyoE PE=3
SV=1
Length = 301
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 56/131 (42%), Gaps = 8/131 (6%)
Query: 21 FLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAI 80
F + + + T+P + +++ V CL L L P F ++ A+MA A
Sbjct: 14 FSLSWRDYFEMTKPKVVALMLLTVLVGMCLALPGAVPLQPLVF--GMLGIAMMAGSAAAF 71
Query: 81 NQLVDVKIDKI--NKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAW----G 134
N L+D +ID + + PL G S+ + + ++ + +P AW
Sbjct: 72 NHLIDRRIDGLMARTYNRPLPKGKLSVNKAFSFAFSLGVLGFVLLYWWVNPLTAWLTFAS 131
Query: 135 LILWFILVTAY 145
LI + ++ TAY
Sbjct: 132 LIGYAVVYTAY 142
>sp|Q6LWN2|DGGGP_METMP Digeranylgeranylglyceryl phosphate synthase OS=Methanococcus
maripaludis (strain S2 / LL) GN=MMP1677 PE=3 SV=1
Length = 278
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 78 TAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSL 120
A+N + D+KID+INKP P+ S ++ + + +M L
Sbjct: 55 NALNDIYDLKIDRINKPKRPIPSKRITLNNAKVFSYSLVVMGL 97
>sp|Q48AB7|CYOE_COLP3 Protoheme IX farnesyltransferase OS=Colwellia psychrerythraea
(strain 34H / ATCC BAA-681) GN=cyoE PE=3 SV=2
Length = 306
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 46/99 (46%), Gaps = 4/99 (4%)
Query: 22 LKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAIN 81
N ++ Y T+P + LV+ T++ + L G L + ++ L++ AIN
Sbjct: 18 FANWRAYYDITKPKVVALLVL--TALVGMSLSVPGALPWQRLIPAMLGIGLLSSAAAAIN 75
Query: 82 QLVDVKIDKI--NKPDLPLASGDFSIKTGVAITLTCAMM 118
+VD KID + + PL +G S+ + + A++
Sbjct: 76 HIVDEKIDTVMGRTHNRPLPAGKISVTNAIVFATSIALL 114
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.142 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,265,526
Number of Sequences: 539616
Number of extensions: 3799824
Number of successful extensions: 12396
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 60
Number of HSP's that attempted gapping in prelim test: 12288
Number of HSP's gapped (non-prelim): 112
length of query: 273
length of database: 191,569,459
effective HSP length: 116
effective length of query: 157
effective length of database: 128,974,003
effective search space: 20248918471
effective search space used: 20248918471
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)