Query 024055
Match_columns 273
No_of_seqs 212 out of 1393
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 08:36:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024055.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024055hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK12887 ubiA tocopherol phyty 100.0 7.3E-39 1.6E-43 289.2 24.7 235 15-253 3-241 (308)
2 PLN02878 homogentisate phytylt 100.0 1.3E-38 2.8E-43 279.3 20.5 205 48-252 7-214 (280)
3 TIGR01476 chlor_syn_BchG bacte 100.0 2.5E-37 5.5E-42 277.0 20.6 217 26-252 1-219 (283)
4 PRK07566 bacteriochlorophyll/c 100.0 2E-36 4.4E-41 274.5 23.9 235 7-252 8-247 (314)
5 TIGR02056 ChlG chlorophyll syn 100.0 7.9E-36 1.7E-40 269.8 23.7 221 19-251 10-240 (306)
6 PLN00012 chlorophyll synthetas 100.0 6.5E-35 1.4E-39 268.8 23.5 219 20-251 80-309 (375)
7 PRK09573 (S)-2,3-di-O-geranylg 100.0 2.5E-35 5.5E-40 263.6 20.2 216 24-259 2-217 (279)
8 PRK12392 bacteriochlorophyll c 100.0 6E-34 1.3E-38 259.0 24.8 220 20-250 7-236 (331)
9 PRK12882 ubiA prenyltransferas 100.0 1.8E-34 3.9E-39 257.7 20.6 213 24-252 3-215 (276)
10 PRK13387 1,4-dihydroxy-2-napht 100.0 5.7E-34 1.2E-38 258.3 23.7 223 25-252 3-247 (317)
11 PRK05951 ubiA prenyltransferas 100.0 6.5E-34 1.4E-38 256.2 23.9 215 23-249 2-225 (296)
12 PRK12884 ubiA prenyltransferas 100.0 2.8E-34 6.1E-39 256.8 21.2 212 23-252 2-213 (279)
13 PRK13595 ubiA prenyltransferas 100.0 2.3E-33 5E-38 249.0 23.3 218 21-254 8-229 (292)
14 PRK06080 1,4-dihydroxy-2-napht 100.0 4.2E-33 9.1E-38 250.9 24.1 217 24-252 2-226 (293)
15 PRK12883 ubiA prenyltransferas 100.0 2.2E-33 4.8E-38 250.8 21.7 208 24-249 2-209 (277)
16 PRK13106 ubiA prenyltransferas 100.0 3.3E-33 7.2E-38 251.2 20.7 217 21-252 11-234 (300)
17 PRK07419 1,4-dihydroxy-2-napht 100.0 9.6E-33 2.1E-37 248.4 23.7 219 22-253 9-233 (304)
18 PLN02922 prenyltransferase 100.0 2.1E-32 4.6E-37 247.5 24.7 225 22-252 12-246 (315)
19 TIGR01475 ubiA_other putative 100.0 2E-32 4.4E-37 245.2 22.4 214 24-252 1-216 (282)
20 PRK12886 ubiA prenyltransferas 100.0 1.8E-32 3.9E-37 246.0 22.1 215 21-252 4-220 (291)
21 PRK12869 ubiA protoheme IX far 100.0 2E-32 4.3E-37 244.7 21.9 214 24-252 1-217 (279)
22 PRK12874 ubiA prenyltransferas 100.0 4.6E-32 1E-36 243.3 23.9 214 20-248 3-221 (291)
23 TIGR00751 menA 1,4-dihydroxy-2 100.0 4.1E-32 8.9E-37 242.6 23.1 209 33-252 1-222 (284)
24 PRK12847 ubiA 4-hydroxybenzoat 100.0 2.1E-32 4.6E-37 245.4 21.3 216 21-252 3-223 (285)
25 PRK12895 ubiA prenyltransferas 100.0 7.6E-32 1.7E-36 240.5 21.7 214 24-252 2-217 (286)
26 PRK04375 protoheme IX farnesyl 100.0 7.9E-32 1.7E-36 242.8 20.9 216 22-252 7-225 (296)
27 COG1575 MenA 1,4-dihydroxy-2-n 100.0 2E-31 4.4E-36 235.4 22.9 220 23-253 6-235 (303)
28 TIGR02235 menA_cyano-plnt 1,4- 100.0 2.6E-31 5.5E-36 237.6 23.7 213 28-253 2-220 (285)
29 PRK12870 ubiA 4-hydroxybenzoat 100.0 4.6E-32 9.9E-37 243.4 18.4 212 21-249 5-221 (290)
30 PRK12888 ubiA prenyltransferas 100.0 4E-31 8.7E-36 236.5 22.3 214 24-252 1-217 (284)
31 PRK12878 ubiA 4-hydroxybenzoat 100.0 6E-31 1.3E-35 238.3 23.7 217 21-252 26-250 (314)
32 TIGR01473 cyoE_ctaB protoheme 100.0 2.7E-31 5.8E-36 237.7 20.0 217 26-259 1-221 (280)
33 COG0382 UbiA 4-hydroxybenzoate 100.0 3.5E-31 7.6E-36 237.9 20.6 213 23-252 11-225 (289)
34 PRK12848 ubiA 4-hydroxybenzoat 100.0 5E-31 1.1E-35 236.1 20.6 214 22-252 2-220 (282)
35 PRK13362 protoheme IX farnesyl 100.0 1.5E-30 3.2E-35 234.9 21.6 222 21-259 9-233 (306)
36 PRK13105 ubiA prenyltransferas 100.0 4.3E-30 9.3E-35 228.7 22.8 216 25-254 1-220 (282)
37 TIGR01474 ubiA_proteo 4-hydrox 100.0 3.4E-30 7.3E-35 230.6 22.2 208 28-250 7-216 (281)
38 PLN02809 4-hydroxybenzoate non 100.0 3.7E-29 8E-34 224.1 22.9 206 22-244 3-216 (289)
39 PRK12876 ubiA prenyltransferas 100.0 1.4E-28 3.1E-33 219.8 22.9 215 23-251 2-229 (300)
40 PRK12875 ubiA prenyltransferas 100.0 5.3E-28 1.1E-32 215.7 24.2 214 21-252 4-223 (282)
41 PRK12873 ubiA prenyltransferas 100.0 1.2E-27 2.6E-32 213.9 22.4 212 22-249 4-224 (294)
42 PRK12871 ubiA prenyltransferas 100.0 1.7E-27 3.7E-32 214.1 23.1 213 23-251 3-232 (297)
43 PRK12872 ubiA prenyltransferas 100.0 1E-27 2.2E-32 215.0 18.8 212 24-253 3-220 (285)
44 PF01040 UbiA: UbiA prenyltran 99.9 1.7E-26 3.6E-31 203.1 16.5 189 39-241 3-193 (257)
45 PRK13592 ubiA prenyltransferas 99.9 4.2E-26 9.1E-31 201.9 17.8 181 65-261 50-238 (299)
46 COG0109 CyoE Polyprenyltransfe 99.9 7.9E-27 1.7E-31 205.8 12.8 217 21-252 14-233 (304)
47 PRK13591 ubiA prenyltransferas 99.9 8.6E-25 1.9E-29 195.1 23.2 170 68-253 65-238 (307)
48 PLN02776 prenyltransferase 99.9 3.6E-24 7.8E-29 194.3 22.5 202 31-248 1-207 (341)
49 PRK12324 phosphoribose diphosp 99.9 1.3E-21 2.8E-26 175.5 19.4 144 21-171 7-152 (295)
50 PRK08238 hypothetical protein; 99.9 3.5E-21 7.7E-26 183.3 18.0 191 18-227 184-377 (479)
51 KOG1381 Para-hydroxybenzoate-p 99.8 3.6E-21 7.7E-26 165.7 7.1 218 13-245 52-275 (353)
52 KOG4581 Predicted membrane pro 99.6 1.5E-16 3.3E-21 134.4 0.2 220 22-252 58-287 (359)
53 KOG1380 Heme A farnesyltransfe 99.6 3.8E-15 8.2E-20 131.5 5.5 212 22-252 91-310 (409)
54 COG1575 MenA 1,4-dihydroxy-2-n 93.6 1.1 2.4E-05 40.5 11.1 31 68-98 183-213 (303)
55 PRK13591 ubiA prenyltransferas 93.1 1 2.2E-05 40.9 10.2 67 79-147 197-271 (307)
56 PRK13105 ubiA prenyltransferas 92.8 1.5 3.3E-05 39.4 10.8 53 73-127 172-224 (282)
57 PRK12872 ubiA prenyltransferas 91.9 2 4.4E-05 38.2 10.6 42 72-116 172-214 (285)
58 PRK12875 ubiA prenyltransferas 91.4 5.2 0.00011 35.9 12.6 51 71-123 175-225 (282)
59 TIGR01474 ubiA_proteo 4-hydrox 91.1 4.2 9.2E-05 36.4 11.8 35 68-102 167-202 (281)
60 TIGR01475 ubiA_other putative 90.8 2.2 4.7E-05 38.2 9.7 34 68-101 165-199 (282)
61 PLN00012 chlorophyll synthetas 90.6 4.2 9.2E-05 38.1 11.6 31 72-102 263-294 (375)
62 PRK07419 1,4-dihydroxy-2-napht 90.2 2.4 5.1E-05 38.6 9.4 41 74-116 187-227 (304)
63 PRK12847 ubiA 4-hydroxybenzoat 89.3 6.7 0.00015 35.1 11.5 34 69-102 173-207 (285)
64 PLN02922 prenyltransferase 88.9 3.1 6.8E-05 38.0 9.2 41 74-116 201-241 (315)
65 PRK07566 bacteriochlorophyll/c 88.9 6.3 0.00014 35.9 11.2 29 74-102 202-231 (314)
66 PRK13106 ubiA prenyltransferas 88.4 4.3 9.4E-05 36.8 9.7 33 69-101 185-218 (300)
67 PRK13387 1,4-dihydroxy-2-napht 87.5 3 6.4E-05 38.1 8.1 45 72-118 200-244 (317)
68 PRK12884 ubiA prenyltransferas 87.4 8.8 0.00019 34.1 11.0 33 70-102 164-197 (279)
69 PRK13592 ubiA prenyltransferas 87.1 2.4 5.2E-05 38.3 7.1 48 205-252 57-106 (299)
70 TIGR02235 menA_cyano-plnt 1,4- 87.0 5.1 0.00011 36.0 9.2 44 73-118 173-216 (285)
71 PRK12888 ubiA prenyltransferas 86.9 16 0.00034 32.8 12.3 35 68-102 166-201 (284)
72 PRK12874 ubiA prenyltransferas 86.8 19 0.00041 32.4 12.8 35 68-102 174-209 (291)
73 PRK12886 ubiA prenyltransferas 86.1 8.2 0.00018 34.8 10.1 34 69-102 170-204 (291)
74 TIGR02056 ChlG chlorophyll syn 86.1 7.2 0.00016 35.4 9.8 39 73-113 195-233 (306)
75 PRK12324 phosphoribose diphosp 86.0 1.8 3.8E-05 39.2 5.7 47 206-252 58-108 (295)
76 PRK11383 hypothetical protein; 86.0 11 0.00023 30.2 9.3 82 135-223 48-132 (145)
77 PRK12392 bacteriochlorophyll c 85.3 4.9 0.00011 37.0 8.3 21 73-93 192-212 (331)
78 PRK09573 (S)-2,3-di-O-geranylg 85.2 7.9 0.00017 34.5 9.5 31 71-101 164-195 (279)
79 PRK12887 ubiA tocopherol phyty 84.9 18 0.00039 32.9 11.7 23 72-94 193-215 (308)
80 TIGR00751 menA 1,4-dihydroxy-2 84.6 9.6 0.00021 34.2 9.8 40 75-116 178-217 (284)
81 PRK12870 ubiA 4-hydroxybenzoat 84.4 12 0.00026 33.6 10.4 36 67-102 172-208 (290)
82 PRK12848 ubiA 4-hydroxybenzoat 84.4 22 0.00047 31.8 11.9 35 68-102 169-204 (282)
83 PRK06080 1,4-dihydroxy-2-napht 83.2 11 0.00023 33.8 9.5 45 73-119 180-224 (293)
84 PRK12871 ubiA prenyltransferas 81.7 25 0.00054 31.8 11.3 34 69-102 183-217 (297)
85 PRK12882 ubiA prenyltransferas 81.6 22 0.00048 31.5 10.8 41 71-114 167-208 (276)
86 PF01040 UbiA: UbiA prenyltran 80.7 3.4 7.5E-05 35.7 5.3 48 205-252 34-85 (257)
87 TIGR01476 chlor_syn_BchG bacte 80.6 15 0.00032 32.8 9.4 35 76-113 176-211 (283)
88 PRK12878 ubiA 4-hydroxybenzoat 80.3 34 0.00074 31.1 11.8 34 69-102 200-234 (314)
89 TIGR01473 cyoE_ctaB protoheme 79.3 4.1 8.9E-05 36.3 5.4 46 206-251 47-96 (280)
90 COG0382 UbiA 4-hydroxybenzoate 77.8 23 0.0005 31.6 9.8 28 67-94 173-200 (289)
91 PRK12883 ubiA prenyltransferas 77.8 13 0.00029 32.9 8.2 29 74-102 167-196 (277)
92 PRK12869 ubiA protoheme IX far 75.3 5.7 0.00012 35.5 5.1 45 206-250 48-96 (279)
93 PRK05951 ubiA prenyltransferas 75.3 33 0.00072 30.8 10.1 34 75-110 185-218 (296)
94 PRK13595 ubiA prenyltransferas 73.6 10 0.00022 34.3 6.2 38 207-244 60-99 (292)
95 PRK12873 ubiA prenyltransferas 72.3 76 0.0016 28.7 12.6 34 69-102 178-212 (294)
96 PRK12895 ubiA prenyltransferas 72.2 74 0.0016 28.6 11.7 35 67-101 165-200 (286)
97 PRK04375 protoheme IX farnesyl 71.4 7.7 0.00017 35.0 5.0 45 207-251 57-105 (296)
98 PRK08238 hypothetical protein; 67.4 12 0.00025 36.4 5.6 48 205-252 237-288 (479)
99 TIGR03750 conj_TIGR03750 conju 64.9 25 0.00055 27.0 5.9 34 88-123 5-38 (111)
100 PLN02776 prenyltransferase 60.2 21 0.00045 33.1 5.6 45 206-250 41-89 (341)
101 PLN02878 homogentisate phytylt 60.0 61 0.0013 29.1 8.3 37 75-114 170-207 (280)
102 PLN02809 4-hydroxybenzoate non 58.4 1.4E+02 0.003 26.8 11.9 24 79-102 184-208 (289)
103 PF11990 DUF3487: Protein of u 53.8 78 0.0017 24.7 7.1 40 88-129 8-51 (121)
104 cd00867 Trans_IPPS Trans-Isopr 53.7 8.3 0.00018 33.0 1.8 44 206-249 158-211 (236)
105 PRK10299 PhoPQ regulatory prot 43.5 30 0.00066 22.1 2.7 17 75-91 19-35 (47)
106 PF06645 SPC12: Microsomal sig 43.5 82 0.0018 22.3 5.3 43 109-153 14-57 (76)
107 PRK10581 geranyltranstransfera 42.3 17 0.00037 32.8 2.0 43 206-248 215-268 (299)
108 PRK12876 ubiA prenyltransferas 38.0 3.1E+02 0.0067 24.9 11.5 24 79-102 190-214 (300)
109 COG0109 CyoE Polyprenyltransfe 36.7 1E+02 0.0023 28.0 6.1 52 71-124 188-240 (304)
110 COG2814 AraJ Arabinose efflux 34.9 4E+02 0.0087 25.2 12.4 136 101-247 73-221 (394)
111 PRK13362 protoheme IX farnesyl 33.8 3.6E+02 0.0078 24.4 10.9 25 76-102 188-212 (306)
112 PF14256 YwiC: YwiC-like prote 30.4 2.7E+02 0.0058 21.8 13.2 12 37-48 8-19 (129)
113 PF04971 Lysis_S: Lysis protei 29.2 63 0.0014 22.5 2.7 29 65-93 36-64 (68)
114 KOG4112 Signal peptidase subun 27.9 2.4E+02 0.0052 21.0 5.6 40 113-154 33-73 (101)
115 PF00348 polyprenyl_synt: Poly 25.8 27 0.00057 30.7 0.4 35 206-240 178-223 (260)
116 TIGR02748 GerC3_HepT heptapren 25.5 26 0.00056 32.0 0.3 32 206-237 202-244 (319)
117 PF10507 DUF2453: Protein of u 21.2 2.8E+02 0.0062 21.3 5.2 64 67-130 34-105 (111)
118 PRK04214 rbn ribonuclease BN/u 20.5 7.2E+02 0.016 23.4 12.9 16 73-88 117-132 (412)
119 TIGR00267 conserved hypothetic 20.3 4.8E+02 0.01 21.3 11.5 20 65-84 32-51 (169)
120 CHL00151 preA prenyl transfera 20.3 40 0.00087 30.8 0.5 32 206-237 207-249 (323)
121 TIGR02749 prenyl_cyano solanes 20.2 51 0.0011 30.1 1.1 32 206-237 206-248 (322)
No 1
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=100.00 E-value=7.3e-39 Score=289.24 Aligned_cols=235 Identities=30% Similarity=0.519 Sum_probs=186.8
Q ss_pred hhhhhhhHHHHHHHHHhhccchhHHHHHHHHHHHHhhcccCCC-Cc---HHHHHHHHHHHHHHHHHHhhhhhhhchhhhh
Q 024055 15 KSFQAGFLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGD-LT---PTFFMETVVPAALMAIYMTAINQLVDVKIDK 90 (273)
Q Consensus 15 ~~~~~~~~~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~-~~---~~~~~l~~l~~~~~~~~~~~~Nd~~D~~~D~ 90 (273)
|+..++..+.+++++|++|||+.+++.+++..+++++.....+ .+ ....+..++...+++.+++++|||+|+|+|+
T Consensus 3 ~~~~~~~~~~l~~~~~l~Rp~t~igt~l~~~~~~l~a~~~~~~~~~~~~~~~~l~~~~~~~~~nv~i~~iNd~~D~~iD~ 82 (308)
T PRK12887 3 KNPLQPMTSWLYALWKFSRPHTIIGTSLSVLGLYLIAIAASSNTIALANLGLLLGAWIACLCGNVYIVGLNQLTDIEIDR 82 (308)
T ss_pred cchhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHh
Confidence 3455667788999999999999999999998887765322111 11 1122233445566666777799999999999
Q ss_pred hcCCCCccccCcCCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHh
Q 024055 91 INKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYG 170 (273)
Q Consensus 91 ~n~~~Rpl~~G~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g 170 (273)
+|||+||+++|++|+++++.+.+++.++++.+++..|++.+.. ..++.+++++||. ||+|+||+++.++++++...|
T Consensus 83 inkp~rPiasG~ls~~~a~~~~~~~~~lal~la~~~~~~~~~~-~~~~~~lg~~Ys~--pP~rlKr~~~~~~~~i~~~~g 159 (308)
T PRK12887 83 INKPHLPLAAGEFSRRQGQRIVIITGILALILAALLGPWLLIT-VGISLLIGTAYSL--PPIRLKRFPLLAALCIFTVRG 159 (308)
T ss_pred cCCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHcC--CchhhcccchhHHHHHHHHHH
Confidence 9999999999999999999999999999999999888766544 4577889999999 999999999989888888888
Q ss_pred hhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHHHh
Q 024055 171 VGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNM 250 (273)
Q Consensus 171 ~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~~ 250 (273)
.++.+|.+.+.+.. .++....++..++..+++++++.++++.||++|+|+|++.|+||+|+++|+|++.+++..++.++
T Consensus 160 ~i~~~g~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~l~~di~D~egD~~~Gi~Tlav~lG~~~a~~l~~~ll~~~ 238 (308)
T PRK12887 160 VIVNLGLFLHFQWL-LGGSVLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCWVLTAC 238 (308)
T ss_pred HHHHHHHHHHHHHH-HhccccCcHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcchhHHHhHHHHHHHHHHHHHHH
Confidence 77777766543221 22222344555666667778889999999999999999999999999999999999998888877
Q ss_pred hhh
Q 024055 251 DLE 253 (273)
Q Consensus 251 ~~~ 253 (273)
++.
T Consensus 239 y~~ 241 (308)
T PRK12887 239 YLG 241 (308)
T ss_pred HHH
Confidence 764
No 2
>PLN02878 homogentisate phytyltransferase
Probab=100.00 E-value=1.3e-38 Score=279.32 Aligned_cols=205 Identities=50% Similarity=0.830 Sum_probs=174.9
Q ss_pred HHhhcccCCCCcHHH---HHHHHHHHHHHHHHHhhhhhhhchhhhhhcCCCCccccCcCCHHHHHHHHHHHHHHHHHHHH
Q 024055 48 CCLPLQNLGDLTPTF---FMETVVPAALMAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGI 124 (273)
Q Consensus 48 ~~la~~~~~~~~~~~---~~l~~l~~~~~~~~~~~~Nd~~D~~~D~~n~~~Rpl~~G~is~~~a~~~~~~~~~l~l~l~~ 124 (273)
+++|.+...+..+.. .+.+++++++++.|..++|||+|+|+||+|||+||++||++|+++++.....+.++|+.+++
T Consensus 7 ~l~a~~~~~~~~~~~~~~~l~~~~~~l~~niyivglNd~~D~EIDkINkP~rPIpSG~iS~~~a~~~~~~~~~lg~~la~ 86 (280)
T PLN02878 7 SLLAVESLSDFSPLFFTGLLEALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPLASGEFSVATGVAIVTSFAIMSFGMGW 86 (280)
T ss_pred hHHHhhccccccHHHHHHHHHHHHHHHhhhhheechhhhhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 344544434443322 23567889999999999999999999999999999999999999999999999999999999
Q ss_pred HhchHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhhhHHHHHHHHHHHHhhccccchhhHHHHHHHHHH
Q 024055 125 MIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVIT 204 (273)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 204 (273)
.+|++++.+....++++++.||.++||+|+||++++...++....+..+.+|+|.+++++++|.+...++..++...+++
T Consensus 87 ~~g~~~l~~al~~~~~lg~~YS~~lp~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~~~~~~~~~~~~~f~~ 166 (280)
T PLN02878 87 IVGSWPLFWALFVSFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFATAFMC 166 (280)
T ss_pred HHChHHHHHHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCccccchhHHHHHHHHH
Confidence 99987777777777789999998779999999999988887777777788999988888888864444555566655777
Q ss_pred HHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHHHhhh
Q 024055 205 CMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDL 252 (273)
Q Consensus 205 ~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~~~~ 252 (273)
++..+++++||++|+||||+.|+||+|+++|+|++.+++..++.++|+
T Consensus 167 ~f~~~i~i~KDi~DieGD~~~Gi~Tlpv~lG~~~~~~i~~~ll~~aY~ 214 (280)
T PLN02878 167 FFSVVIALFKDIPDVEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYA 214 (280)
T ss_pred HHHHHHHHHhhCcCchhHHHCCCceechhhChHHHHHHHHHHHHHHHH
Confidence 788899999999999999999999999999999999999999999888
No 3
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=100.00 E-value=2.5e-37 Score=277.01 Aligned_cols=217 Identities=18% Similarity=0.247 Sum_probs=173.5
Q ss_pred HHHHHhhccchhHHHHHHHHHHHHhhcccCCC-CcHHHHHH-HHHHHHHHHHHHhhhhhhhchhhhhhcCCCCccccCcC
Q 024055 26 KSLYRFTRPNTLNGLVIAVTSICCLPLQNLGD-LTPTFFME-TVVPAALMAIYMTAINQLVDVKIDKINKPDLPLASGDF 103 (273)
Q Consensus 26 ~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~-~~~~~~~l-~~l~~~~~~~~~~~~Nd~~D~~~D~~n~~~Rpl~~G~i 103 (273)
|++++++||+++..+++++++|.+++.....+ +++...++ .+++..+.+.++|.+|||+|+|+|++|+|+||+++|++
T Consensus 1 ~~~~~l~rp~t~~~~~~~~~~G~~~a~~~~~~~~~~~~~ll~~~~~~~l~~~~~n~~Nd~~D~~~D~~~~~~Rpi~~G~i 80 (283)
T TIGR01476 1 RAHIELMKPVTWIPPIWACFCGALASGYERGFPEHWWLMLLGMLMAGPLGTGFSQSINDYFDRDVDAINEPQRPIPSGII 80 (283)
T ss_pred CceeEecCCceehhHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhHhhhCcccCCCCCCCCCCCCc
Confidence 46789999999999999999999887322222 44443333 56688899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhhhHHHHHHHHHHH
Q 024055 104 SIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQK 183 (273)
Q Consensus 104 s~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~~~~~~~~ 183 (273)
|+++++.....+..+++++++.++.+...+..+++.+.+++||. ||+++||++++|++.++..++..+....+.
T Consensus 81 s~~~a~~~~~~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~Ys~--~p~~lk~~~~~g~~~vg~~~~~~~~~~~~~---- 154 (283)
T TIGR01476 81 SLREVRWNWLVLTVAGLLVALVLGNWLIVLFTVVGIVLAVIYSM--PPIKLKRNGWLGPPAVGLSYEGLPWMAGHA---- 154 (283)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheecC--chhhhccCCCccHHHHHHHHHHHHHHHHHH----
Confidence 99999999999999999998888776533334566778999999 999999999889999998777544444332
Q ss_pred HhhccccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHHHhhh
Q 024055 184 YVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDL 252 (273)
Q Consensus 184 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~~~~ 252 (273)
..+ ..++..++.....++++.++++.||++|+|+|+++|+||+|+++|+|++++++..++..+++
T Consensus 155 -~~~---~~~~~~~~~~~~~~l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~ 219 (283)
T TIGR01476 155 -IFA---PLTWQSVVVALIYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTINVFQA 219 (283)
T ss_pred -HhC---CCCHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcCcceEEcHHHHHHHHHHHHHHHHH
Confidence 222 13333344444566677888999999999999999999999999999999998887666553
No 4
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=100.00 E-value=2e-36 Score=274.50 Aligned_cols=235 Identities=18% Similarity=0.219 Sum_probs=180.2
Q ss_pred ccccchhh-hhhhhhhHHHHHHHHHhhccchhHHHHHHHHHHHHhhcccCCCCcH--H--HHHHHHHHHHHHHHHHhhhh
Q 024055 7 KSEDDNKL-KSFQAGFLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTP--T--FFMETVVPAALMAIYMTAIN 81 (273)
Q Consensus 7 ~~~~~~~~-~~~~~~~~~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~--~--~~~l~~l~~~~~~~~~~~~N 81 (273)
+|+|+... ++-.+...+++|+|++++||+++..++++.+.|++.+. . .++.. . .++..+++..+.++++|.+|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~l~RP~~~~~~~~~~~~g~~~~~-~-~~~~~~~~~~~~l~~~l~~~l~~~~~~~~N 85 (314)
T PRK07566 8 TSKPRQLLGPKGASPTTSIWKARLQLMKPITWFPPMWAFLCGAVSSG-A-FGWTLENVLKLLAGMLLAGPLLCGTSQTLN 85 (314)
T ss_pred ccccccccccccccccchHHHHHHHHhCCcchHHHHHHHHHHHHHcC-C-CCcchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44554422 22334456789999999999999999999888887653 2 22222 1 12234566777899999999
Q ss_pred hhhchhhhhhcCCCCccccCcCCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCCcccccchhHH
Q 024055 82 QLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLA 161 (273)
Q Consensus 82 d~~D~~~D~~n~~~Rpl~~G~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~ 161 (273)
||+|+|+|++|+|+||+++|++|+++++.++..+.++++++++.+|++...+. +++++.+++||. ||+++||+++++
T Consensus 86 d~~D~~~D~~~~~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~-l~~~~~~~~Yt~--gP~~lK~~~~~g 162 (314)
T PRK07566 86 DYFDREVDAINEPYRPIPSGAISLRWVLYLIAVLTVLGLAVAYLLGPWVFLAA-LLGLFLAWIYSA--PPLRLKQNGWLG 162 (314)
T ss_pred hhhccCccccCCCCCCCCCceeCHHHHHHHHHHHHHHHHHHHHHHChHHHHHH-HHHHHHHHHhcC--Cccccccccchh
Confidence 99999999999999999999999999999999999999998888887665443 466677899999 999999999889
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHH
Q 024055 162 AISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIK 241 (273)
Q Consensus 162 ~~~v~~~~g~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~ 241 (273)
++.++..+|.++.+.++.. ..+. ..++..++...+.+++..+++..||++|+|+|+++|+||+|+++|+|++++
T Consensus 163 ~i~vg~~~g~~~~~~g~~~----~~~~--~~~~~~~l~~~~~~l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~~~a~~ 236 (314)
T PRK07566 163 NYAVGLSYEGLPWWAGAAA----FGAG--LPSWPIVILALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNAAR 236 (314)
T ss_pred hHHHHHHHHHHHHHHHHHH----hccC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHcCCcccceeEcHHHHHH
Confidence 9999998876555554432 1111 233333444445556677889999999999999999999999999999999
Q ss_pred HHHHHHHHhhh
Q 024055 242 ELLNLFKNMDL 252 (273)
Q Consensus 242 ~~~~~~~~~~~ 252 (273)
++..++.++++
T Consensus 237 l~~~l~~~~~~ 247 (314)
T PRK07566 237 IACVVIDLFQL 247 (314)
T ss_pred HHHHHHHHHHH
Confidence 98776665544
No 5
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=100.00 E-value=7.9e-36 Score=269.76 Aligned_cols=221 Identities=19% Similarity=0.269 Sum_probs=172.2
Q ss_pred hhhHHHHHHHHHhhccchhHHHHHHHHHHHHhhcccCCCCcHH----HHHHHHHHHHHHHHHHhhhhhhhchhhhhhcCC
Q 024055 19 AGFLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPT----FFMETVVPAALMAIYMTAINQLVDVKIDKINKP 94 (273)
Q Consensus 19 ~~~~~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~----~~~l~~l~~~~~~~~~~~~Nd~~D~~~D~~n~~ 94 (273)
....+++|+|++++||+++..++++++.|+..+ +++ ++... .++..+++..+.++++|.+|||+|+|.|+.|+|
T Consensus 10 ~~~~~~~~~~~~l~RP~~~~~~~~~~~~G~~~~-~~~-~~~~~~~~~~ll~~ll~~~l~~~~~n~~NDy~D~d~D~~~~~ 87 (306)
T TIGR02056 10 PGETNIWKIRLQLMKPITWIPLIWGVVCGAAAS-GNF-HWSLEDVAKAALCMLLSGPCLTGYTQTINDFYDRDIDAINEP 87 (306)
T ss_pred ccchhHHHHHHHHcChHhhHHHHHHHHHHHHHc-CCC-CcchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccCCC
Confidence 356777899999999999999999999998864 222 22211 122345677899999999999999999999999
Q ss_pred CCccccCcCCHHHHHHHHHHHHHHHHHHHHHhch------HHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHH
Q 024055 95 DLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGS------PPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIG 168 (273)
Q Consensus 95 ~Rpl~~G~is~~~a~~~~~~~~~l~l~l~~~~~~------~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~ 168 (273)
+||+++|++++++++..+..+..+++++++.+.. +..+...+++++++++||. ||+++||++++|++.++..
T Consensus 88 ~Rpi~~G~is~~~a~~~~~~l~~~~~~lg~~l~~~~~~~~~~~~~l~~~~~~~~~~Yt~--gP~~lk~~g~~G~i~vg~~ 165 (306)
T TIGR02056 88 YRPIPSGAISEPEVITQIVLLFIAGIAIAFILDLWAGHEFPNVFVLALFGSFIAFIYSA--PPLKLKQNGWLGNFALGAS 165 (306)
T ss_pred CCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHcC--ChhhhhhcccHHHHHHHHH
Confidence 9999999999999999999888888887755421 2223334566778999999 9999999998899988887
Q ss_pred HhhhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHH
Q 024055 169 YGVGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFK 248 (273)
Q Consensus 169 ~g~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~ 248 (273)
++..+..+.+. ..| +.++..++....+++++.++++.||++|+|+|+++|+||+|+++|+|++++++..++.
T Consensus 166 ~~~~~~~~~~a-----~~g---~~~~~~~l~~~~~~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~~~a~~~~~~l~~ 237 (306)
T TIGR02056 166 YIALPWWAGHA-----LFG---ELNPDIAVLTLIYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGIETAAWICVGAID 237 (306)
T ss_pred HHHHHHHHHHH-----HhC---CCcHHHHHHHHHHHHHHHHHHHHHHccChHHHHHcCCcCcchhcChHHHHHHHHHHHH
Confidence 77544444332 223 2344444445566778889999999999999999999999999999999999987655
Q ss_pred Hhh
Q 024055 249 NMD 251 (273)
Q Consensus 249 ~~~ 251 (273)
.++
T Consensus 238 ~~~ 240 (306)
T TIGR02056 238 IFQ 240 (306)
T ss_pred HHH
Confidence 433
No 6
>PLN00012 chlorophyll synthetase; Provisional
Probab=100.00 E-value=6.5e-35 Score=268.78 Aligned_cols=219 Identities=20% Similarity=0.237 Sum_probs=168.4
Q ss_pred hhHHHHHHHHHhhccchhHHHHHHHHHHHHhhcccCCCCcHH----HHHHHHHHHHHHHHHHhhhhhhhchhhhhhcCCC
Q 024055 20 GFLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPT----FFMETVVPAALMAIYMTAINQLVDVKIDKINKPD 95 (273)
Q Consensus 20 ~~~~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~----~~~l~~l~~~~~~~~~~~~Nd~~D~~~D~~n~~~ 95 (273)
...+++|+|++++||++|...++++++|++.. +.+ ++... .++..+++..++++++|.+|||+|+|.|++|+|+
T Consensus 80 ~~~~~~k~~l~L~RP~t~~~~~~~v~~G~~~~-g~~-~~~~~~~~~~ll~~ll~~~L~~~~an~iNDy~D~~iD~~~~~~ 157 (375)
T PLN00012 80 QETDIWKIRLQLTKPVTWPPLVWGVLCGAAAS-GNF-HWTLEDVAKSIVCMLMSGPFLTGYTQTINDWYDREIDAINEPY 157 (375)
T ss_pred cchHHHHHHHHHhCHHHHHHHHHHHHHHHHHc-CCC-CchhhhHHHHHHHHHHHHHHHHHHHHHHHCeecHhhhccCCCC
Confidence 34678999999999999999999999998843 222 22211 1234556778889999999999999999999999
Q ss_pred CccccCcCCHHHHHHHHHHHHHHHHHHHHHh-------chHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHH
Q 024055 96 LPLASGDFSIKTGVAITLTCAMMSLAMGIMI-------GSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIG 168 (273)
Q Consensus 96 Rpl~~G~is~~~a~~~~~~~~~l~l~l~~~~-------~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~ 168 (273)
||+++|++++++++..+..+..+++.+++.+ +++.+.+ .+++++++++||. ||+++||++++|++.+|..
T Consensus 158 Rpi~sG~Is~~~al~~~~~l~~~~l~l~~~L~~~~~~~~~~~~~l-~l~gi~l~~~YS~--pPl~lKr~~~~G~v~lG~~ 234 (375)
T PLN00012 158 RPIPSGAISENEVITQIWVLLLGGLGLAYTLDVWAGHDFPIVFYL-ALGGSLLSYIYSA--PPLKLKQNGWIGNYALGAS 234 (375)
T ss_pred CCcCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH-HHHHHHHhhhhcC--CchhhhHhccHhHHHHHHH
Confidence 9999999999999998777777666666443 2323332 3456677999999 9999999999899988888
Q ss_pred HhhhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHH
Q 024055 169 YGVGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFK 248 (273)
Q Consensus 169 ~g~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~ 248 (273)
++.++..+++. +.| ..++..++..+++++++.++++.||++|+|+|+++|++|+|+++|+|++++++..++.
T Consensus 235 ~~~lp~~~g~a-----~~g---~~s~~~illal~~~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~~~a~~l~~~~l~ 306 (375)
T PLN00012 235 YISLPWWAGQA-----LFG---TLTPDVVVLTLLYSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGVETAKWICVGSID 306 (375)
T ss_pred HHHHHHHHHHH-----HcC---CCCHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHcCCcccceeechHHHHHHHHHHHH
Confidence 77544433332 334 2344444444566778889999999999999999999999999999999999876555
Q ss_pred Hhh
Q 024055 249 NMD 251 (273)
Q Consensus 249 ~~~ 251 (273)
+..
T Consensus 307 l~~ 309 (375)
T PLN00012 307 ITQ 309 (375)
T ss_pred HHH
Confidence 443
No 7
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=100.00 E-value=2.5e-35 Score=263.57 Aligned_cols=216 Identities=22% Similarity=0.320 Sum_probs=174.5
Q ss_pred HHHHHHHhhccchhHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcCCCCccccCcC
Q 024055 24 NLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVKIDKINKPDLPLASGDF 103 (273)
Q Consensus 24 ~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~~~D~~n~~~Rpl~~G~i 103 (273)
++|+|++++||+++..++++.+.|++++.+.. .++..+++++++.+++++++|++|||+|+|+|++|+|+||+++|++
T Consensus 2 ~~~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~--~~~~~~~l~~l~~~l~~~~~~~iNd~~D~~iD~~~~~~Rpl~sG~i 79 (279)
T PRK09573 2 SIKAYFELIRPKNCIGASIGAIIGYLIASNFK--IDLKGIILAALVVFLVCAGGNVINDIYDIEIDKINKPERPIPSGRI 79 (279)
T ss_pred CHHHHHHHHhHhHHHHHHHHHHHHHHHHccCC--cchHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcCCCcc
Confidence 47899999999999999999999998885432 2343445677888999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhhhHHHHHHHHHHH
Q 024055 104 SIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQK 183 (273)
Q Consensus 104 s~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~~~~~~~~ 183 (273)
|+++++.++..+.++++.+++.+|+....++ +++.+..++||. ++||++.++|+++|..+|..+..|...
T Consensus 80 s~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~-~~~~~~~~~Ys~-----~lKr~~~~~~~~vg~~~G~~~~~g~~~---- 149 (279)
T PRK09573 80 SLKEAKIFSITLFIVGLILSIFINIYAFLIA-LLNSILLYLYAK-----DLKKTGLIGNLIVAYLTGLSFIFGGLA---- 149 (279)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH-----HHhcCCcHHHHHHHHHHHHHHHHHHHH----
Confidence 9999999999999999999888887766554 456667889997 789999889999999999665444332
Q ss_pred HhhccccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHHHhhhhccCCCC
Q 024055 184 YVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDLEDESPLP 259 (273)
Q Consensus 184 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~~~~~~~~~~~ 259 (273)
..+ ... .++.....++|+.++++.||++|+|+|+++|+||+|+++|+|++.++......+..+ .+++|
T Consensus 150 -~~~---~~~--~~~l~~~~f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~--~~~~~ 217 (279)
T PRK09573 150 -VFN---VLR--IIILFLCAFFSTWSREIVKDIEDIEGDLKENVITLPIKYGIKKSWYIAKILLILAIV--LSPLP 217 (279)
T ss_pred -Hcc---chH--HHHHHHHHHHHHHHHHHHhhhhhhhhHHHCCCccccHHhhHHHHHHHHHHHHHHHHH--HHHHH
Confidence 112 111 222233445667788999999999999999999999999999999999888777666 44444
No 8
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=100.00 E-value=6e-34 Score=259.00 Aligned_cols=220 Identities=20% Similarity=0.360 Sum_probs=164.6
Q ss_pred hhHHHHHHHHHhhccchhHHHHHHHHHHHHhhcccC-CCCcHHHH--HHHHHHHHHHHHHHhhhhhhhchhhhhhcCCCC
Q 024055 20 GFLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNL-GDLTPTFF--METVVPAALMAIYMTAINQLVDVKIDKINKPDL 96 (273)
Q Consensus 20 ~~~~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~-~~~~~~~~--~l~~l~~~~~~~~~~~~Nd~~D~~~D~~n~~~R 96 (273)
+..+++|++++++||+++. ..++.+.|.++|.+.. ++.....+ ...++...+...++|++|||+|+|+|++|+|.|
T Consensus 7 ~~~~~~k~~l~L~kP~t~l-~~~p~~~g~~lA~g~~~~~~~~~~l~l~~~~~~~~L~~~a~~~iND~~D~~~D~~n~rtR 85 (331)
T PRK12392 7 GFVDKIRAHLELLDPVTWI-SVFPCLAGGVMASGAMQPTLHDYLLLLALFLMYGPLGTGFSQSVNDYFDLELDRVNEPTR 85 (331)
T ss_pred chhHHHHHHHHHHCHHHHH-HHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHHHHHHHHHhHHhcceeecccccCCCCC
Confidence 4567799999999999887 6777777777775322 22222211 112233344456789999999999999999999
Q ss_pred ccccCcCCHHHHHHHHHHHHHHHHHHHHHhch-------HHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHH
Q 024055 97 PLASGDFSIKTGVAITLTCAMMSLAMGIMIGS-------PPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGY 169 (273)
Q Consensus 97 pl~~G~is~~~a~~~~~~~~~l~l~l~~~~~~-------~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~ 169 (273)
|+++|++|+++++.....+..+++.++.+++. +..++..+++++++++||. ||+++||+++.++..+|+.+
T Consensus 86 pl~~G~is~~~al~~~~~l~~la~~lg~~L~~~~~~~~~~~il~~~~~~l~l~~~YS~--~P~~lKr~~~~g~~~vGl~~ 163 (331)
T PRK12392 86 PIPSGRLSEKEALWNSIIVLLLAIGLGVWLGLHIGGERGMVIISSILAGLFVAYIYSA--PPLKLKKNILTSAPAVGFSY 163 (331)
T ss_pred CCCcCCcCHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHhhhhcC--CchhhhccchhHHHHHHHHH
Confidence 99999999999999999999988888766542 2233333466778999999 99999999988998899888
Q ss_pred hhhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHHH
Q 024055 170 GVGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKN 249 (273)
Q Consensus 170 g~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~ 249 (273)
+..+....+ ..++ ..++..++.....++++.+++++||++|+|+|++.|+||+|+++|+|++.+++.....+
T Consensus 164 ~~~~~~~~~-----a~~g---~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~~~a~~i~~~~~~~ 235 (331)
T PRK12392 164 GFITFLSAN-----ALFS---DIRPEVVWLAGLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKNTFLVSFIIIDL 235 (331)
T ss_pred HHHHHHHHH-----HHhc---CCCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcHhhHHHHHHHHHHH
Confidence 754433322 1334 23333344445667788899999999999999999999999999999999888777643
Q ss_pred h
Q 024055 250 M 250 (273)
Q Consensus 250 ~ 250 (273)
.
T Consensus 236 ~ 236 (331)
T PRK12392 236 V 236 (331)
T ss_pred H
Confidence 3
No 9
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=1.8e-34 Score=257.72 Aligned_cols=213 Identities=21% Similarity=0.277 Sum_probs=170.5
Q ss_pred HHHHHHHhhccchhHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcCCCCccccCcC
Q 024055 24 NLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVKIDKINKPDLPLASGDF 103 (273)
Q Consensus 24 ~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~~~D~~n~~~Rpl~~G~i 103 (273)
++|+|++++||++...+.++.+.|++++.+..+ +....++++++.++.++++|++||++|+|+|+.|+|+||+++|++
T Consensus 3 ~~~~~~~l~Rp~~~~~~~~~~~~g~~~a~~~~~--~~~~~~l~~l~~~l~~~~~~~~Nd~~D~~iD~~~~~~Rpl~~G~i 80 (276)
T PRK12882 3 TVRGYLELTRPVNAVVAGVAAFIGAFIAGGILS--SPSLTGLAFAAVFLATGAGNAINDYFDREIDRINRPDRPIPSGAV 80 (276)
T ss_pred CHHHHHHHHhhhHHHHHHHHHHHHHHHhccccc--hHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCcCCCCc
Confidence 478999999999999999999999999854322 222234677888999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhhhHHHHHHHHHHH
Q 024055 104 SIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQK 183 (273)
Q Consensus 104 s~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~~~~~~~~ 183 (273)
|++|++.++..+.++|+++++.+++....++ ..+.+..+.||. |+||++.++|+.++...|..+..+..
T Consensus 81 s~~~a~~~~~~l~~~g~~~~~~l~~~~~~~~-~~~~~~~~~Yt~-----~lK~~~~~g~~~vg~~~g~~~~~g~~----- 149 (276)
T PRK12882 81 SPRGALAFSILLFAAGVALAFLLPPLCLAIA-LFNSLLLVLYAE-----TLKGTPGLGNASVAYLTGSTFLFGGA----- 149 (276)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH-----HHhcccchhHHHHHHHHHHHHHHHHH-----
Confidence 9999999999999999999888887665543 455567889998 89999988999999888854444422
Q ss_pred HhhccccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHHHhhh
Q 024055 184 YVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDL 252 (273)
Q Consensus 184 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~~~~ 252 (273)
..+.. .....+......++++.+++++||++|+|+|+++|+||+|+++|+|++.++...+.....+
T Consensus 150 -~~~~~--~~~~~~~l~~~~fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~~~t~~~~~~~~~~~~~ 215 (276)
T PRK12882 150 -AVGTE--GLLALLVLFALAALATLAREIIKDVEDIEGDRAEGARTLPILIGVRKALYVAAAFLLVAVA 215 (276)
T ss_pred -Hhccc--chHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHcCCccccHHhhHHHHHHHHHHHHHHHHH
Confidence 12211 1111222233445567789999999999999999999999999999999998888776665
No 10
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=100.00 E-value=5.7e-34 Score=258.34 Aligned_cols=223 Identities=16% Similarity=0.072 Sum_probs=176.1
Q ss_pred HHHHHHhhccchhHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcC----CCCcccc
Q 024055 25 LKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVKIDKINK----PDLPLAS 100 (273)
Q Consensus 25 l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~~~D~~n~----~~Rpl~~ 100 (273)
+|.|++++||++...++.|+++|.++|.....++++..++++++++++.|.++|.+|||+|++.|..++ ++|++++
T Consensus 3 ~~~~~~~~Rp~tl~~s~~pvllG~a~a~~~~~~~~~~~~ll~ll~~~~~~~~~N~~NDy~D~~~g~D~~~~~~~~~~i~~ 82 (317)
T PRK13387 3 AKLFLKLVEIHTKIASFFPVILGTLFSLYVAKIFDWLLFLAFMVAMLAFDIATTAINNYMDFKKALDTADYVGIGNGIGQ 82 (317)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccccCCcchhcc
Confidence 688999999999999999999999998654456777777677888899999999999999998765554 6799999
Q ss_pred CcCCHHHHHHHHHHHHHHHHHH----HHHhchHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhhhHHHH
Q 024055 101 GDFSIKTGVAITLTCAMMSLAM----GIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFS 176 (273)
Q Consensus 101 G~is~~~a~~~~~~~~~l~l~l----~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~ 176 (273)
|.+++++++..+..+..++.++ .+..|+..+ +.++++++.+++||. ||+++||++ +||+.++.++|..+..+
T Consensus 83 ~~ls~~~v~~~~~~~~~ia~~~Gl~L~~~~g~~~l-~igl~g~~~~~~Yt~--gP~~l~y~g-LGe~~v~i~~G~~~v~g 158 (317)
T PRK13387 83 HGLKPRNVLTVILLMYVVAAILGVYLCMNTSWLLL-VIGLICFAIGILYTG--GPLPLSRMP-LGEIFSGLTMGFGIFLL 158 (317)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHH-HHHHHHHHHhhhhcC--CCcccccCc-cHHHHHHHHHHHHHHHH
Confidence 9999999999998888777764 444564444 445678889999999 999999999 69999999999777666
Q ss_pred HHHHHHHHhhcccc----------chhhH----HHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHH
Q 024055 177 FFIHIQKYVLGRSV----------VITRS----LIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKE 242 (273)
Q Consensus 177 ~~~~~~~~~~g~~~----------~~~~~----~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~ 242 (273)
.++. |+...+... .++.. .++..+.+++.+..+++.||+||+|+|+++|+||+|+++|+|+++++
T Consensus 159 ~~yv-~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG~~~a~~l 237 (317)
T PRK13387 159 AVYI-NTNTITIESLLFQGEMFTIQGNLIAIIAIGVISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYIGREKGVVL 237 (317)
T ss_pred HHHH-hcCCCchHHHHhcccchhhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeeeEcHHhHHHH
Confidence 6553 321111000 00000 11234556666777899999999999999999999999999999999
Q ss_pred HHHHHHHhhh
Q 024055 243 LLNLFKNMDL 252 (273)
Q Consensus 243 ~~~~~~~~~~ 252 (273)
+..++..+++
T Consensus 238 ~~~l~~~a~l 247 (317)
T PRK13387 238 FAILFYASYL 247 (317)
T ss_pred HHHHHHHHHH
Confidence 9998888776
No 11
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=6.5e-34 Score=256.23 Aligned_cols=215 Identities=16% Similarity=0.184 Sum_probs=170.6
Q ss_pred HHHHHHHHhhccchhHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcC-----CCCc
Q 024055 23 KNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVKIDKINK-----PDLP 97 (273)
Q Consensus 23 ~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~~~D~~n~-----~~Rp 97 (273)
.++|.+++.+||+++..+..++++|.++|.....++++..+++++++.+++|.++|.+|||+|+|.|..++ ++||
T Consensus 2 ~~~~~~~~~~Rp~tl~~s~~~v~lG~a~a~~~~~~f~~~~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~rt~~~~r~ 81 (296)
T PRK05951 2 QNAKLFFIFTRPWSFVMTAIVAFFSIAYGYYLFRSFDPLLGALMLLGYFLLHASLNVFNDYKDYVLDCDHHETTGYRQHP 81 (296)
T ss_pred ccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCccccccCCCCCc
Confidence 36899999999999999999999999998654457788777788899999999999999999976655554 7899
Q ss_pred cccCcCCHHHHHHHHHHHHHHHHHHHHH----hchHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhhhH
Q 024055 98 LASGDFSIKTGVAITLTCAMMSLAMGIM----IGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGI 173 (273)
Q Consensus 98 l~~G~is~~~a~~~~~~~~~l~l~l~~~----~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~ 173 (273)
+++|++|++|++..+..+..+++.++.. .+.+.+ +..+++.+.++.||. ||+++|+++ +||+.++.++|+.+
T Consensus 82 l~~G~is~~~~~~~~~~~~~ia~~~g~~l~~~~~~~~l-~l~~~~~~~~~~Yt~--~P~~lky~g-lGe~~v~~~~g~~~ 157 (296)
T PRK05951 82 IQAGIMTLGHLRVLGIALGAIALQLGWSLVLDRGIGAV-TLALLGVFLWTCYMG--PPFFLKYRW-LGEHLVFYAWSHML 157 (296)
T ss_pred cccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH-HHHHHHHHHHHHHcC--CCcccCCCC-chHHHHHHHHHHHH
Confidence 9999999999999998877776655422 244333 334577789999999 999999998 59999999999877
Q ss_pred HHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHHH
Q 024055 174 QFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKN 249 (273)
Q Consensus 174 ~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~ 249 (273)
.++.+.. ++ + ..++..+.......+++....+.||+||+|+|+++|+||+|+++|+|++ ++...+...
T Consensus 158 vlg~~~~-~~---~---~~~~~~~~~sl~~~l~~~~il~~n~~~D~e~D~~~G~~Tlav~lG~~~a-~~~~~~~~~ 225 (296)
T PRK05951 158 VMGLIYV-WL---G---NLSSPNLLAGVPLGLLMALVLLSNNLRDIEDDERKGIPTLAVIFGRRGA-ALYIFALLS 225 (296)
T ss_pred HHHHHHH-Hh---C---cccHHHHHHHHHHHHHHHHHHHHCCCccchhHHHCCCeeeeeeEcHhhH-HHHHHHHHH
Confidence 7887654 22 2 2233334444556666778899999999999999999999999999999 554444443
No 12
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=2.8e-34 Score=256.79 Aligned_cols=212 Identities=22% Similarity=0.329 Sum_probs=171.0
Q ss_pred HHHHHHHHhhccchhHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcCCCCccccCc
Q 024055 23 KNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVKIDKINKPDLPLASGD 102 (273)
Q Consensus 23 ~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~~~D~~n~~~Rpl~~G~ 102 (273)
+++++|++++||+++..+.++.+.|.++|.+..+ +..+++.+++.++.+.++|++|||+|+|+|+.|+|+||+++|+
T Consensus 2 ~~l~~~~~l~R~~~~~~~~~~~~~g~~la~~~~~---~~~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~r~~Rpl~~G~ 78 (279)
T PRK12884 2 TKMKAYLELLRPEHGLMAGIAVVLGAIIALGGLP---LDEALLGFLTAFFASGSANALNDYFDYEVDRINRPDRPIPSGR 78 (279)
T ss_pred hHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCCCc---hHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhccCCCCCCCCCC
Confidence 4789999999999999999999999988855432 2234466788899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhhhHHHHHHHHHH
Q 024055 103 FSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQ 182 (273)
Q Consensus 103 is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~~~~~~~ 182 (273)
+|+++++.++.++.++++++++.+|+....+. +++.+.++.||. ++||++++++++++..+|..+..++..
T Consensus 79 is~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~Ys~-----~lK~~~~~~~~~~~~~~~~~~~~g~~~--- 149 (279)
T PRK12884 79 ISRREALLLAILLFILGLIAAYLISPLAFLVV-ILVSVLGILYNW-----KLKEYGLIGNLYVAFLTGMTFIFGGIA--- 149 (279)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH-----hhccccchhHHHHHHHHHHHHHHHHHH---
Confidence 99999999999999999998888887665544 456677899998 789999889999998887433333221
Q ss_pred HHhhccccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHHHhhh
Q 024055 183 KYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDL 252 (273)
Q Consensus 183 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~~~~ 252 (273)
.+. .+...++.....++++.+.++.+|++|+|+|+++|+||+|+++|+|++++++..+...+++
T Consensus 150 ---~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~ 213 (279)
T PRK12884 150 ---VGE---LNEAVILLAAMAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGEKIAGRIAAALFILAVL 213 (279)
T ss_pred ---hCC---CchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHcCCeeechHhcHHHHHHHHHHHHHHHHH
Confidence 121 1112333334556677788999999999999999999999999999999988777666555
No 13
>PRK13595 ubiA prenyltransferase; Provisional
Probab=100.00 E-value=2.3e-33 Score=248.97 Aligned_cols=218 Identities=19% Similarity=0.224 Sum_probs=166.5
Q ss_pred hHHHHHHHHHhhccchhHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcCCCCcccc
Q 024055 21 FLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVKIDKINKPDLPLAS 100 (273)
Q Consensus 21 ~~~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~~~D~~n~~~Rpl~~ 100 (273)
....++.+++.+||.+|+.+..++.+|+..+.. ..++.+...+++++.....+.++|++|||+|+|+|++|+|+||+++
T Consensus 8 ~~~~l~~ll~~sRP~~wi~t~~~~~~G~~~~g~-~~~~~~~~~~l~~~~~~p~n~~~~giND~fD~eiDa~Npr~~~i~~ 86 (292)
T PRK13595 8 ILLPLRRLLLISRPALWVNTVGTLVTGVWLTGH-LYTLDPGVLPLLLYLTLPFNLLIYGLNDLADRETDAASPRKGGWQG 86 (292)
T ss_pred hhhHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC-cccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCCCCCc
Confidence 456678899999999999999999999977643 2333224444667778888999999999999999999999999999
Q ss_pred CcCCHHHHHHHHHHHHHH----HHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhhhHHHH
Q 024055 101 GDFSIKTGVAITLTCAMM----SLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFS 176 (273)
Q Consensus 101 G~is~~~a~~~~~~~~~l----~l~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~ 176 (273)
|++|+++++.+...+..+ ++.+++..++..+.+ ..++.+++++||. ||+|+|+++++++++. ..+|. +..
T Consensus 87 G~is~~~~~~~~~~~~~~~~~~~l~la~~l~~~~~~l-~~v~~~l~~~YS~--pPlRlK~rp~l~~l~~-~~~g~--p~~ 160 (292)
T PRK13595 87 ARLSPGEVRPLLRAVLLLNAPFLLYLALLLPPAATLL-LLLYAALFVGYSL--PPLRFKARPFLDGLSN-AAYAL--PLA 160 (292)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHcc--CccchhcCcchhHHHH-HHHHH--HHH
Confidence 999999998876654443 455566667665544 3466688999999 9999999999988775 44442 222
Q ss_pred HHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHHHhhhhc
Q 024055 177 FFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDLED 254 (273)
Q Consensus 177 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~~~~~~ 254 (273)
... .+.|. ......+ ....+|..+++++++++|+|+||+.|+||+|+++|+|++.+++..+++++.+..
T Consensus 161 ~~~----~~~g~---~~~~~~l--~a~~~w~~g~dii~ai~DiegDr~~Gi~Slpv~lG~r~a~~~a~~~~~~a~~~~ 229 (292)
T PRK13595 161 LPA----LALGA---PVPWPPL--LALMAWSVGKHAFDAAQDIPADRAAGTRTVATTLGVRGTALYALAWFLLAGALL 229 (292)
T ss_pred HHH----HHcCC---cchHHHH--HHHHHHHHHHHHHHhccChHhHHHcCCeechHHhCcHhHHHHHHHHHHHHHHHH
Confidence 221 13332 1111122 233456789999999999999999999999999999999999999988776654
No 14
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=100.00 E-value=4.2e-33 Score=250.88 Aligned_cols=217 Identities=19% Similarity=0.205 Sum_probs=174.6
Q ss_pred HHHHHHHhhccchhHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhch--hhhh--hcCCCCccc
Q 024055 24 NLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDV--KIDK--INKPDLPLA 99 (273)
Q Consensus 24 ~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~--~~D~--~n~~~Rpl~ 99 (273)
.+|.|++++||+++..+.+++++|.++|... .++++..+++++++.++++.++|.+|||+|+ +.|+ .++|+||++
T Consensus 2 ~~~~~~~~~Rp~~~~~~~~p~l~G~~~a~~~-~~~~~~~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~~r~l~ 80 (293)
T PRK06080 2 TFKAWLELARPKTLPAAFAPVLVGTALAYWL-GSFHPLLALLALLAALLLQIATNLANDYGDYVKGTDTEDRVGPLRAIG 80 (293)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHHHHHc-CCccHHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCcccccCCccccc
Confidence 3688999999999999999999999888432 3456666667788999999999999999999 4675 456899999
Q ss_pred cCcCCHHHHHHHHHHHHHHHHHHHHH----hchHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhhhHHH
Q 024055 100 SGDFSIKTGVAITLTCAMMSLAMGIM----IGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQF 175 (273)
Q Consensus 100 ~G~is~~~a~~~~~~~~~l~l~l~~~----~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l 175 (273)
+|++|+++++..+..+.+++++++.. .+++.+. ..+++++.+++||. ||.++|+++ +||+.++..+|.....
T Consensus 81 ~G~is~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~-~~~~~~~~~~~Ys~--~p~~~~~~g-lge~~~~~~~G~~~~~ 156 (293)
T PRK06080 81 RGGISPKQVKRAAIAFFGLAALLGLYLVAVSGWWLLL-LGLLCIAAAILYTG--GPKPYGYTG-LGELFVGVFFGLVIVL 156 (293)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHhhhhcC--CCCccCCCC-cHHHHHHHHHHHHHHH
Confidence 99999999999988888776665543 3443333 34566778899999 999999998 5999999999976666
Q ss_pred HHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHHHhhh
Q 024055 176 SFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDL 252 (273)
Q Consensus 176 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~~~~ 252 (273)
+.++. ++ + ..++..++...+.++++.+.++.||++|+|+|+++|+||+|+++|+|++++++..++.++++
T Consensus 157 ~~~~~-~~---~---~~~~~~~~~~l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~~ 226 (293)
T PRK06080 157 GTYYL-QA---G---TVDSAVFLPALPCGLLIGAVLLANNIRDIETDRENGKNTLAVRLGDKNARRLHAALLALAYL 226 (293)
T ss_pred HHHHH-hc---C---CCCHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHHH
Confidence 65542 11 2 23344455556677788889999999999999999999999999999999999999888877
No 15
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=100.00 E-value=2.2e-33 Score=250.80 Aligned_cols=208 Identities=22% Similarity=0.289 Sum_probs=164.0
Q ss_pred HHHHHHHhhccchhHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcCCCCccccCcC
Q 024055 24 NLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVKIDKINKPDLPLASGDF 103 (273)
Q Consensus 24 ~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~~~D~~n~~~Rpl~~G~i 103 (273)
++|+|++++||+++..+.++.+.|++++.++.++ +......+++.++.++++|++|||+|+|+|+.|+|+||+++|++
T Consensus 2 ~l~~~~~l~Rp~~~~~~~~~~~~G~~la~~~~~~--~~~~~l~~~~~~~~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~i 79 (277)
T PRK12883 2 ELKAFIEITRPHNCILAGIVGILGSLVALGGIPP--IKTLILIFLVVYLGCSGGNTINDYFDYEIDKINRPNRPLPRGAM 79 (277)
T ss_pred CHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHHHHHHHHhHHHhhhhHhccccCCCCCCCCCCcc
Confidence 3689999999999999999888999887544322 22233456677788889999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhhhHHHHHHHHHHH
Q 024055 104 SIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQK 183 (273)
Q Consensus 104 s~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~~~~~~~~ 183 (273)
++++++.++.++.++|+.+++.+|++.+.+. +.+...++.|+. ++|++++++|+.++..+|..+..+.. +
T Consensus 80 s~~~a~~~~~~l~~~g~~l~~~~~~~~~~~~-~~~~~~~~~Y~~-----~~k~~~~lg~~~vg~~~g~~~~~g~~-a--- 149 (277)
T PRK12883 80 SRKAALYYSLLLFAVGLALAYLINIEAFLFA-LGAYVLMFLYAW-----KLKPLPFIGNVVVALLTGATPIYGAI-A--- 149 (277)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhh-----cccCCcchhhHHHHHHHHHHHHHHHH-H---
Confidence 9999999999999999998888887766554 455677899998 78999878999999999865543322 1
Q ss_pred HhhccccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHHH
Q 024055 184 YVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKN 249 (273)
Q Consensus 184 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~ 249 (273)
. + ..+...+.. .+.+++..++++.||++|+|+|+++|+||+|+++|+|+++++.....+.
T Consensus 150 -~-~---~~~~~~~~~-~~~fl~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~~~~~ 209 (277)
T PRK12883 150 -V-G---RIGLAGYLA-ICAFLVNVAREIMKDIEDIEGDKAKGAKTLPIIIGKKRAAYIGAIFGVL 209 (277)
T ss_pred -h-c---cccHHHHHH-HHHHHHHHHHHHHhhhhhhccHHHcCCcCcChHhcHHHHHHHHHHHHHH
Confidence 1 2 122222222 2344455678899999999999999999999999999999988776443
No 16
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=3.3e-33 Score=251.15 Aligned_cols=217 Identities=16% Similarity=0.146 Sum_probs=169.2
Q ss_pred hHHHHHHHHHhhccchhHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcC--CCCcc
Q 024055 21 FLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVKIDKINK--PDLPL 98 (273)
Q Consensus 21 ~~~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~~~D~~n~--~~Rpl 98 (273)
.+.++|+|+|++||++......+.+.|+.+|.++.+ ++..+++..++.+++++++|++|||+|+|+|++|+ ++||+
T Consensus 11 ~~~~l~~yl~L~R~~~~~~~l~~~~~g~~la~~~~~--~~~~l~l~~lg~~l~~~a~~~~Nd~~D~diD~~~~RT~~RPl 88 (300)
T PRK13106 11 TRSKFYIILRFLRIEQTFFSLPMAYLGAFVAIKGIP--PISTLILIFLALFFLRTAGMTNDNLADLEIDAKNPRTKNRPL 88 (300)
T ss_pred hHHHHHHHHHHHccccHHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHHHHHHHHHHhhHHhccccCCCccCCCCC
Confidence 566899999999999999998888889998865433 34444467788899999999999999999999984 69999
Q ss_pred ccCcCCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhhhHHHHHH
Q 024055 99 ASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFF 178 (273)
Q Consensus 99 ~~G~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~~~ 178 (273)
++|++|++|++.+..+..+.++.+++.+|+.+..++. .+.+....|+. +||++.++|+.+|..+|..+..| +
T Consensus 89 ~sG~is~~~A~~~~~~~~~~~~~~~~~ln~~~~~l~~-~~~~~~~~Y~~------~KR~t~~~~~~lg~~~~~~~~~G-~ 160 (300)
T PRK13106 89 VTGAIKISEAKALITAGLILFFASAYLVNRWALLLSP-IVALIAMSYPY------MKRYTAFANYHLASIQGLAVFSG-A 160 (300)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhH------HhcCCcchHHHHHHHHHHHHHHH-H
Confidence 9999999999999877777777777777877665543 44455677876 89999999999999988554444 3
Q ss_pred HHHHHHhhcccc-----chhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHHHhhh
Q 024055 179 IHIQKYVLGRSV-----VITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDL 252 (273)
Q Consensus 179 ~~~~~~~~g~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~~~~ 252 (273)
.+ +.|... ..+...++.....++|+.+++++|+++|+|+|+|+|+||+|+++| |++++++..++.++.+
T Consensus 161 ~a----~~g~~~~~~~~~l~~~~~~l~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G-~~a~~~~~~~~~~~v~ 234 (300)
T PRK13106 161 VA----VLGLYANSLIQVLLRVPWLFVIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG-KWALTFAGLNQLFSVV 234 (300)
T ss_pred HH----HcCCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh-hhHHHHHHHHHHHHHH
Confidence 32 223110 011122222334567888999999999999999999999999999 9999998888887766
No 17
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=100.00 E-value=9.6e-33 Score=248.43 Aligned_cols=219 Identities=15% Similarity=0.078 Sum_probs=177.0
Q ss_pred HHHHHHHHHhhccchhHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhchh--hhhhcCCCCccc
Q 024055 22 LKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVK--IDKINKPDLPLA 99 (273)
Q Consensus 22 ~~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~~--~D~~n~~~Rpl~ 99 (273)
.++++.|++.+||+++..++.|+++|.++|.....++++..++++++++++.|.++|.+|||+|++ .|+. +++ ...
T Consensus 9 ~~~~~~w~~a~RP~tl~asl~pv~lG~a~a~~~~~~f~~~~~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~-~~~-~~~ 86 (304)
T PRK07419 9 PSRRKLWLAAIKPPMYSVAIMPILVGTAWALGETGVFRLDQFITFLLAAILILAWENLSNDVFDADTGIDKN-KFH-SVV 86 (304)
T ss_pred ccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc-ccc-Ccc
Confidence 467889999999999999999999999998654457888887788899999999999999999997 6773 222 234
Q ss_pred cCcCCHHHHHHHHHHHHHHHHHHH----HHhchHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhhhHHH
Q 024055 100 SGDFSIKTGVAITLTCAMMSLAMG----IMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQF 175 (273)
Q Consensus 100 ~G~is~~~a~~~~~~~~~l~l~l~----~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l 175 (273)
++..++++....+..+.+++++++ +..|+ ..+..++++++.+++||. ||+++|+++ +||+.++.++|.++..
T Consensus 87 ~~~~~~~~v~~~~~~~~~~a~~~Gl~L~~~~g~-~~l~ig~~g~~~~~~YT~--gP~~l~y~g-LGE~~v~l~~G~l~v~ 162 (304)
T PRK07419 87 NLTGNKSLVFWLANLFLLLGLLGILAIALQSDW-TVLGLVLLCCFLGYLYQG--PPFRLGYQG-LGEPLCFLAFGPLAVA 162 (304)
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHHHHhhcH-HHHHHHHHHHHHhheccC--CCcccCCCC-chHHHHHHHHHHHHHH
Confidence 555578998888887777666554 33354 444445678889999999 999999999 5999999999988888
Q ss_pred HHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHHHhhhh
Q 024055 176 SFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDLE 253 (273)
Q Consensus 176 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~~~~~ 253 (273)
+.++. |+ + .+++..+...+.+++.+.++++.||+||+|+|+++|+||+|+++|+|++++++..+...+++.
T Consensus 163 g~~yv-~t---~---~~~~~~~~~sl~~gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~ay~~ 233 (304)
T PRK07419 163 AALYS-QT---P---SWSLIPLAASIILGLATSLILFCSHFHQVEDDLAAGKRSPIVRLGTKRGAQLLPWIVGLIYAL 233 (304)
T ss_pred HHHHH-hc---C---CCCHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHcCCcceeeeechHhHHHHHHHHHHHHHHH
Confidence 87764 22 2 344445555566777788899999999999999999999999999999999999998887774
No 18
>PLN02922 prenyltransferase
Probab=100.00 E-value=2.1e-32 Score=247.46 Aligned_cols=225 Identities=16% Similarity=0.172 Sum_probs=174.5
Q ss_pred HHHHHHHHHhhccchhHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhchh--hhhhcCCCCccc
Q 024055 22 LKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVK--IDKINKPDLPLA 99 (273)
Q Consensus 22 ~~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~~--~D~~n~~~Rpl~ 99 (273)
.+++|.|++.+||+++..++.|+++|.++|.....++++..++++++++++.|.++|.+|||+|++ .|+.++..+.-.
T Consensus 12 ~~~~~~w~~a~Rp~tl~~s~~pv~lG~a~A~~~~g~f~~~~~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~~~~~~~ 91 (315)
T PLN02922 12 LSRATLWWRAIKLPMYSVALVPLTVGAAAAYLQTGLFDARRYGTLLLSSVLVITWLNLSNDAYDADTGVDKNKKESVVNL 91 (315)
T ss_pred ccHHHHHHHHhCcchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHHHhhhhHhccCcCcccCCCCCCc
Confidence 556889999999999999999999999998654457888888788899999999999999999986 576433221122
Q ss_pred cCcCCHHHHHHHHHHHHHHHHHHHHHh----chHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhhhHHH
Q 024055 100 SGDFSIKTGVAITLTCAMMSLAMGIMI----GSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQF 175 (273)
Q Consensus 100 ~G~is~~~a~~~~~~~~~l~l~l~~~~----~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l 175 (273)
.| ++++.+..++.+.++++...+.+ +.|.+++.++++++.+++||. ||+++||++ +||+.++.++|.++..
T Consensus 92 ~~--s~~~v~~~~~~~~~la~~g~~ll~~~~~~~~~l~iG~~g~~~~~~Yt~--gP~pl~y~g-LGE~~v~i~fG~l~v~ 166 (315)
T PLN02922 92 VG--SRRGVLAAAIGCLALGAAGLVWASLVAGNIRVILLLAAAILCGYVYQC--PPFRLSYKG-LGEPLCFAAFGPLATT 166 (315)
T ss_pred cc--CHHHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHhc--CCcccccCc-chHHHHHHHHHHHHHH
Confidence 33 89999888887777666422221 334454555688889999999 999999999 5999999999977777
Q ss_pred HHHHHHHHHhhccc-c---chhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHHHhh
Q 024055 176 SFFIHIQKYVLGRS-V---VITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMD 251 (273)
Q Consensus 176 ~~~~~~~~~~~g~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~~~ 251 (273)
+.|.. |+...+.. . ..++..++..+.+.+++.++++.||+||+|+|+++||||+|+++|+|+++++...++..++
T Consensus 167 g~y~~-~~~~~~~~~~~~~~~~~~~~l~slp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y 245 (315)
T PLN02922 167 AFYLA-LASGAGGSEMAILPLTPTVLSASVLVGLTTTLILFCSHFHQIDGDRAVGKMSPLVRLGTEKGSRVVRWAVLLLY 245 (315)
T ss_pred HHHHH-hcccccccccccccccHHHHHHHHHHHHHHHHHHHHccCcchhhHHHcCccceeeEEChHHHHHHHHHHHHHHH
Confidence 76664 32111110 0 1233445556677778889999999999999999999999999999999999999888777
Q ss_pred h
Q 024055 252 L 252 (273)
Q Consensus 252 ~ 252 (273)
+
T Consensus 246 ~ 246 (315)
T PLN02922 246 S 246 (315)
T ss_pred H
Confidence 5
No 19
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=100.00 E-value=2e-32 Score=245.18 Aligned_cols=214 Identities=15% Similarity=0.165 Sum_probs=167.2
Q ss_pred HHHHHHHhhccchhHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhc--CCCCccccC
Q 024055 24 NLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVKIDKIN--KPDLPLASG 101 (273)
Q Consensus 24 ~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~~~D~~n--~~~Rpl~~G 101 (273)
++|+|+|++||++...+......|+++|.++.+ ++..+++++++.+++++++|++|||+|+|+|++| +|+||+++|
T Consensus 1 ~~~~~~~L~r~~~~~~~~~~~~~g~~la~~~~~--~~~~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl~sG 78 (282)
T TIGR01475 1 KFKDILELIKFEHTVFALPFAYAGALLAAKGLP--GLKTLILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPLVSG 78 (282)
T ss_pred CHHHHHHHHccccHHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCCCCCC
Confidence 378999999999998887777778888855433 3444556778999999999999999999999998 579999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhhhHHHHHHHHH
Q 024055 102 DFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHI 181 (273)
Q Consensus 102 ~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~~~~~~ 181 (273)
++|+++++.++.++.+++++++..+|..+..++ ..+.+..+.|+. +||++.++++..|...|..+ +.+|.+
T Consensus 79 ~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~~~~~-~~g~~a- 149 (282)
T TIGR01475 79 LISKKEARTMIILSLALFLSASYFLNPLAFILS-PLVLLVLIIYPY------TKRFTFLCHYVLGSTYGLAP-LAGWVA- 149 (282)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHhh------HhccccccHHHHHHHHHHHH-HHHHHH-
Confidence 999999999999888888888887887665443 344556788876 89999899999888877533 344543
Q ss_pred HHHhhccccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHHHhhh
Q 024055 182 QKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDL 252 (273)
Q Consensus 182 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~~~~ 252 (273)
..|. .+.....++.....++|+.+.+++||++|+|+|+++|+||+|+++|+|+++++...+..++++
T Consensus 150 ---~~g~-~~~~~~~~ll~~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~ 216 (282)
T TIGR01475 150 ---VIGT-ISFFLVAWLLGIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGIKAALKIASLSHVITFI 216 (282)
T ss_pred ---HhCC-ccchHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhchHHHHHHHHHHHHHHHH
Confidence 2222 110122233344566778889999999999999999999999999999999998887766655
No 20
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=1.8e-32 Score=246.03 Aligned_cols=215 Identities=15% Similarity=0.124 Sum_probs=167.6
Q ss_pred hHHHHHHHHHhhccchhHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcC--CCCcc
Q 024055 21 FLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVKIDKINK--PDLPL 98 (273)
Q Consensus 21 ~~~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~~~D~~n~--~~Rpl 98 (273)
..+++|+|+|++||++......+...|+++|..+.++ +..+.+..++.+++++++|++|||+|+|.|++|+ ++||+
T Consensus 4 ~~~~~~~y~~L~r~~~~~~~~~~~~~g~~lA~~~~~~--~~~l~~~~l~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPL 81 (291)
T PRK12886 4 LLTKLKVFLEMIKFSHTLFALPFAGIGAVLAALGLPG--ASQLDWILMAMVGARTAAMGFNRLIDAEIDARNPRTAGRAI 81 (291)
T ss_pred hHHHHHHHHHHhCccchHHHHHHHHHHHHHhccCCCC--HHHHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCCCCCCCC
Confidence 4567999999999999998888888899888544333 3334466788899999999999999999999997 58999
Q ss_pred ccCcCCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhhhHHHHHH
Q 024055 99 ASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFF 178 (273)
Q Consensus 99 ~~G~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~~~ 178 (273)
++|++|++|+..+...+.+.++++++.+|+.+..++. ++.+..+.|+. +||++.++++..|...+. +++++|
T Consensus 82 ~sG~is~~~A~~~~~~~~~~~~~l~~~~~~~~~~l~~-~~~~~~~~Y~~------~Kr~t~~~~~~~g~~~~~-~~l~g~ 153 (291)
T PRK12886 82 PAGLISKGSAILFIVLSSLLMLFAAWFLNPLCLYLSP-PALFFLLLYSY------CKRFTALAHVVLGFCLAL-APLGAW 153 (291)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhh------hhccccccHHHHHHHHHH-HHHHHH
Confidence 9999999999998766666666666677877665543 44556788987 799998999888887653 445556
Q ss_pred HHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHHHhhh
Q 024055 179 IHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDL 252 (273)
Q Consensus 179 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~~~~ 252 (273)
.+ ..| +.+...++.....++|+.+.++.++++|+|+|+++|+||+|+++|+++++++...+..++++
T Consensus 154 ~a----~~g---~~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~ 220 (291)
T PRK12886 154 IA----IRG---TIELPAILLGLAVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGVNGSLWIARVFHLLMIG 220 (291)
T ss_pred HH----HcC---CCcHHHHHHHHHHHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCchhHHHHHHHHHHHHHH
Confidence 54 223 22333344444566778888899999999999999999999999999999988777666555
No 21
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=100.00 E-value=2e-32 Score=244.69 Aligned_cols=214 Identities=15% Similarity=0.190 Sum_probs=167.9
Q ss_pred HHHHHHHhhccchhHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcC--CCCccccC
Q 024055 24 NLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVKIDKINK--PDLPLASG 101 (273)
Q Consensus 24 ~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~~~D~~n~--~~Rpl~~G 101 (273)
++|+|+|++||++.....++.+.|++++.++ ..++..+++.+++..++++++|++|||+|+|.|++|+ |+||+++|
T Consensus 1 ~~~~~~~l~rp~~~~~~~~~~~~g~~la~~~--~~~~~~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG 78 (279)
T PRK12869 1 KIKAYLKLLKPRVIWLLDLAAVAGYFLAAKH--GVSWLPLIPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPTPVG 78 (279)
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCcCCC
Confidence 4689999999999999999999999988543 2344444466778888899999999999999999987 69999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhhhHHHHHHHH
Q 024055 102 DFSIKTGVAITLTCAMMSLAMGIM-IGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIH 180 (273)
Q Consensus 102 ~is~~~a~~~~~~~~~l~l~l~~~-~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~~~~~ 180 (273)
++|++|++.++..+.++|+.++++ +++...........+..+.||. ++||+++ .+..++...|..+++++|.+
T Consensus 79 ~is~~~a~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~Yt~-----~lKr~~~-~~~~v~~~~g~~~~l~g~~a 152 (279)
T PRK12869 79 LVNRKEALAVGSALSALGTALGFLLLGPLTALFIALGWFFYAVVYTI-----WLKPRTW-LNIVIGGFAGNAAALAGYAS 152 (279)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-----ccccCCh-HHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998877 7765433333344456788987 7999997 56777787887777777764
Q ss_pred HHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHHHhhh
Q 024055 181 IQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDL 252 (273)
Q Consensus 181 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~~~~ 252 (273)
..| ..+...++.....++|+.+....++++|+|+|+++|+||+|+++|+|++++....+..+..+
T Consensus 153 ----~~g---~~~~~~~ll~~~~~~w~~~~~~~l~~~d~edd~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~ 217 (279)
T PRK12869 153 ----GTG---SLDLEAVLLSFLIYLWTPGHIWSLALKYREDYRRAGVPMLPAVVGEKTSVRAISISNALMIP 217 (279)
T ss_pred ----HhC---CCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHcCCeecceeecHHHHHHHHHHHHHHHHH
Confidence 123 23333344444566677777666788999999999999999999999999988777666555
No 22
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=4.6e-32 Score=243.28 Aligned_cols=214 Identities=20% Similarity=0.244 Sum_probs=168.6
Q ss_pred hhHHHHHHHHHhhccchhHHHHHHHHHHHHhhccc---CCCCcHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcC--C
Q 024055 20 GFLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQN---LGDLTPTFFMETVVPAALMAIYMTAINQLVDVKIDKINK--P 94 (273)
Q Consensus 20 ~~~~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~---~~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~~~D~~n~--~ 94 (273)
+.++++|+|+|++||++.+.+....+.|.++|... ...+++...++++++.++++.++|++|||+|+|.|++|+ +
T Consensus 3 ~~~~~l~~y~~l~r~~~~~~~l~~a~~g~~la~~~~~~~~~~~~~~~~l~~l~~~l~~~a~~~~Nd~~DrdiD~~~~RT~ 82 (291)
T PRK12874 3 KFTKKLKDISELVVFKHSIFSLPFIFIAMIVASKQKNDTGWFGFKLLILGILAAVSARNFAMAFNRLVDRDIDKDNPRTA 82 (291)
T ss_pred hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCCCC
Confidence 35668999999999999999988888888877421 112455555567788889999999999999999999997 5
Q ss_pred CCccccCcCCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhhhHH
Q 024055 95 DLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQ 174 (273)
Q Consensus 95 ~Rpl~~G~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~ 174 (273)
+||+++|++|++|++.++..+.++++.+++.+|+.+..+. +..+.....|+. +||++.++++..|...|.. +
T Consensus 83 ~RPl~sG~is~~~a~~~~~~~~~~~~~~~~~~n~~~~~l~-~~~~~~~~~Y~~------~KR~t~~~~~~~g~~~~~~-~ 154 (291)
T PRK12874 83 NRPSVDGRISVKSMVLFIVLNALIFIGVSYFINPLAFKLS-FPFLIVLGGYSY------FKRFSSLAHLVLGLSLGLA-P 154 (291)
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHhh------hcccccccHHHHHHHHHHH-H
Confidence 9999999999999999999988888888887887766554 345556788987 8999989999988887744 4
Q ss_pred HHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHH
Q 024055 175 FSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFK 248 (273)
Q Consensus 175 l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~ 248 (273)
+.+|.+ +.|. .+...++.....++|+.+.+.+++++|+|+|+++|++|+|+++|+|++.+....+..
T Consensus 155 l~G~~a----v~g~---~~~~~~~l~~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~~~~~~~~~~~~~ 221 (291)
T PRK12874 155 IAGVVA----VLGE---IPLWSVFLALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGEKATLFISRLFHL 221 (291)
T ss_pred HHHHHH----HcCC---CcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhhHhHHHHHHHHHH
Confidence 444543 2232 232223333456778889999999999999999999999999999999987655544
No 23
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=100.00 E-value=4.1e-32 Score=242.61 Aligned_cols=209 Identities=16% Similarity=0.107 Sum_probs=170.4
Q ss_pred ccchhHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhchhh--hhh--cCCCCccccCcCCHHHH
Q 024055 33 RPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVKI--DKI--NKPDLPLASGDFSIKTG 108 (273)
Q Consensus 33 Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~~~--D~~--n~~~Rpl~~G~is~~~a 108 (273)
||+++..++.|+++|.++|.... ++++..+++++++++++|.++|..|||+|++. |+. .+|+|++++|.++++++
T Consensus 1 Rp~tl~~s~~pv~lG~ala~~~~-~f~~~~~ll~~~~~~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~is~~~v 79 (284)
T TIGR00751 1 RPKTLPLAIAPIVAGTALAAWLH-AFVWLVALLALATAVLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLITPREV 79 (284)
T ss_pred CCchHHHHHHHHHHHHHHHHHcC-CccHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCCCHHHH
Confidence 89999999999999999986543 78888777888999999999999999999953 543 25789999999999999
Q ss_pred HHHHHHHHHHHHHHHH----Hhch-----HHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhhhHHHHHHH
Q 024055 109 VAITLTCAMMSLAMGI----MIGS-----PPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFI 179 (273)
Q Consensus 109 ~~~~~~~~~l~l~l~~----~~~~-----~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~~~~ 179 (273)
+..+..+..++++++. ..++ +.+++..+++++.+++||. ||+++|+++ +||+.++.++|+++.++.++
T Consensus 80 ~~~~~~~~~~a~~~Gi~l~~~~~~~~~~~~~~l~lg~~~~~~~~~Yt~--gP~~l~y~g-LGE~~v~i~~G~l~v~g~~y 156 (284)
T TIGR00751 80 KTALITSVALGALSGLVLALLAAPNLSDLFWFIALGALCIAAAITYTV--GSKPYGYAG-LGDISVLVFFGPLAVLGTQY 156 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHhHhhcC--CCCccccCc-hHHHHHHHHHHHHHHHHHHH
Confidence 9998887776665543 3343 1343445677788999999 999999999 59999999999888888765
Q ss_pred HHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHHHhhh
Q 024055 180 HIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDL 252 (273)
Q Consensus 180 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~~~~ 252 (273)
. |+ + .+++..++..+...+++.++++.||+||+|+|+++|+||+|+++|+|+++++...++..+++
T Consensus 157 v-q~----~--~~~~~~ll~sl~~g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay~ 222 (284)
T TIGR00751 157 L-QA----H--RVDWVGILPAVATGLLACAVLNINNLRDIPTDARAGKNTLAVRLGDARTRMYHQGLLAVAGV 222 (284)
T ss_pred H-hc----C--CCCHHHHHHHHHHHHHHHHHHHHcCcccchhHHHcCCEeehhhcchHhHHHHHHHHHHHHHH
Confidence 4 22 2 23444444455566777889999999999999999999999999999999999998887774
No 24
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=100.00 E-value=2.1e-32 Score=245.37 Aligned_cols=216 Identities=17% Similarity=0.226 Sum_probs=170.5
Q ss_pred hHHHHHHHHHhhccchhHH---HHHHHHHHHHhhcccCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcC--CC
Q 024055 21 FLKNLKSLYRFTRPNTLNG---LVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVKIDKINK--PD 95 (273)
Q Consensus 21 ~~~~l~~~~~l~Rp~~~~~---~~~~~~~g~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~~~D~~n~--~~ 95 (273)
..+++++|++++||++... +.++.+.|.++|..+. ..++...++++++.++++.++|++|||+|+|.|++|+ ++
T Consensus 3 ~~~~~~~~~~l~R~~kp~~~~l~~~~~~~g~~la~~~~-~~~~~~~ll~~l~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~ 81 (285)
T PRK12847 3 ILMKFLAYFKLMRLHKPIGILLVFFPTLFGLLLASHSL-LPDISLLVLFIIGSVLMRSAGCIINDIFDRKIDKHVARTKN 81 (285)
T ss_pred hHHHHHHHHHHHCcchHHHHHHHHHHHHHHHHHHhCcc-CCcHHHHHHHHHHHHHHHHHHHHHHhHHHhhhccCCCcccC
Confidence 3457999999999997654 5578888998885432 2345455567788899999999999999999999765 58
Q ss_pred CccccCcCCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhhhHHH
Q 024055 96 LPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQF 175 (273)
Q Consensus 96 Rpl~~G~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l 175 (273)
||+++|++|++|++.++..+.++++.+++.+|+..+.++ +++.+..+.||. .||++.++++..|..++. .++
T Consensus 82 Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~-~~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~~~-~~l 153 (285)
T PRK12847 82 RPLASGALSVKQALILLFILLLIALVILLLLNKTTIYLS-FIAVILIVLYPL------MKRFFYWPQLFLGFTFNM-GIL 153 (285)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHhccc------cccCCcccHHHHHHHHHH-HHH
Confidence 999999999999999999999999988888887666544 456667888986 888888899888887774 334
Q ss_pred HHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHHHhhh
Q 024055 176 SFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDL 252 (273)
Q Consensus 176 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~~~~ 252 (273)
+.|.+ ..| +.+...++.....++|+.+.+.+++++|+|+|+++|+||+|+++|+|++.++.....+..++
T Consensus 154 ~~~~a----~~g---~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~ 223 (285)
T PRK12847 154 MAFAA----VQN---QLDIEAILLYIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGNKTRKYILRLYIISLIL 223 (285)
T ss_pred HHHHH----HcC---CCcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhccccHHHHHHHHHHHHHH
Confidence 44543 223 23334444445667788899999999999999999999999999999999998888776666
No 25
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=7.6e-32 Score=240.51 Aligned_cols=214 Identities=13% Similarity=0.097 Sum_probs=167.1
Q ss_pred HHHHHHHhhccchhHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhc--CCCCccccC
Q 024055 24 NLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVKIDKIN--KPDLPLASG 101 (273)
Q Consensus 24 ~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~~~D~~n--~~~Rpl~~G 101 (273)
++|+|+|++||++...++...+.|+++|.++.+ ++..+++.+++.+++++++|++||+.|+|.|++| +++||+++|
T Consensus 2 ~~~~~~el~k~~~t~~al~~a~~g~~lA~~~~~--~~~~l~l~~~~~~~~rsag~~~Ndi~Dr~iD~~~~RT~~RPLpsG 79 (286)
T PRK12895 2 NFRDIVDYIKLEHTVFDLPFILAGYVIAAGHYI--HPIKILLILIAAVSARTSAMSINRIEGLRYDMINPRKKDWALVSG 79 (286)
T ss_pred cHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCCCCcCCCCCCCCC
Confidence 478999999999989888888889988854322 2323335566788999999999999999999999 469999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhhhHHHHHHHHH
Q 024055 102 DFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHI 181 (273)
Q Consensus 102 ~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~~~~~~ 181 (273)
++|++||+.+.+.+.++++.+++++|+.++.++. ..+.+...|+. +||+++++++.+|...|. .++.+|.+
T Consensus 80 ~is~~~A~~~~~~~~~~~~~~~~~ln~l~~~l~~-~~~~l~~~yp~------~KR~t~~~~~~lG~~~g~-~~l~g~~A- 150 (286)
T PRK12895 80 RIKMREAIAFTIIFIAIFEICTFLLNRLVFILSP-IVIFLFIIDPF------LKRYTAWRHIYMGSIIGL-GVLAGYLA- 150 (286)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHH------HHhCccccHHHHHHHHHh-HHHHHHHH-
Confidence 9999999999999999999888888987765543 34444455554 999999999999999984 45555654
Q ss_pred HHHhhccccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHHHhhh
Q 024055 182 QKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDL 252 (273)
Q Consensus 182 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~~~~ 252 (273)
+.|. ..+....++.....++|+.+.+++++++|+|+|++.|+||+|+++|+|++.+++..++.++.+
T Consensus 151 ---v~g~-~~~~~~~~~l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG~~~~~~i~~~~~~~~~~ 217 (286)
T PRK12895 151 ---VIPA-FPYNLLIYIIFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGIKNGLYISDIFHISSLI 217 (286)
T ss_pred ---HcCC-CCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHCCccHHHHHHHHHHHHHH
Confidence 2232 111122233334566788999999999999999999999999999999999887666655444
No 26
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=100.00 E-value=7.9e-32 Score=242.77 Aligned_cols=216 Identities=17% Similarity=0.147 Sum_probs=167.7
Q ss_pred HHHHHHHHHhhccchhHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcC--CCCccc
Q 024055 22 LKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVKIDKINK--PDLPLA 99 (273)
Q Consensus 22 ~~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~~~D~~n~--~~Rpl~ 99 (273)
+.++|+|++++||+++....++...|+++|.++ .+++..+++++++.++++.++|++|||+|+|.|++|+ |+||++
T Consensus 7 ~~~~~~y~~L~rp~~~~~~~~~~~~G~~la~~~--~~~~~~~~l~~l~~~l~~aa~~~iNd~~D~~iD~~~~Rt~~Rpl~ 84 (296)
T PRK04375 7 RATLKDYLALTKPRVISLNLFTALGGMLLAPPG--VPPLLLLLLTLLGIALVAGAAGALNNYIDRDIDAKMERTKNRPLV 84 (296)
T ss_pred hhhHHHHHHHhHHHHHHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCccCCCCCC
Confidence 346899999999999999999999999998543 2344445567788899999999999999999999987 699999
Q ss_pred cCcCCHHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhhhHHHHHH
Q 024055 100 SGDFSIKTGVAITLTCAMMSLAMGIM-IGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFF 178 (273)
Q Consensus 100 ~G~is~~~a~~~~~~~~~l~l~l~~~-~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~~~ 178 (273)
+|++|++|++.++..+.++|+++++. .++....+.....+...+.|+. ++||++. ++..++...|..+++.+|
T Consensus 85 sG~is~~~a~~~~~~l~~~g~~l~~~l~~~~~~~l~~~~~~~~~~~Ys~-----~lKr~~~-~~~~v~~~~g~~~~l~g~ 158 (296)
T PRK04375 85 TGRISPREALIFGLVLGVLGFLLLGLFVNPLAAWLTLAGIFFYVVVYTL-----WLKRRTP-QNIVIGGAAGAMPPLIGW 158 (296)
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcc-----chhcCCc-cchHHHHHHHHhHHHHHH
Confidence 99999999999999999999988755 4655544332222234668987 7999995 677777777755656656
Q ss_pred HHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHHHhhh
Q 024055 179 IHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDL 252 (273)
Q Consensus 179 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~~~~ 252 (273)
.+ ..| ..+...++.....++|+...+..++++|+|+|+++|+||+|+++|+|++++.+....++...
T Consensus 159 ~a----~~g---~~~~~~~~l~~~~~lw~~~~~~~~~~~d~~D~~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~ 225 (296)
T PRK04375 159 AA----VTG---SLSWEALILFLIIFLWTPPHFWALAIFRKDDYAAAGIPMLPVVKGIRVTKRQILLYTVLLVA 225 (296)
T ss_pred HH----hCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHcCCCccceeeCHHHHHHHHHHHHHHHHH
Confidence 53 223 23333444445666777778888889999999999999999999999999877776665544
No 27
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=100.00 E-value=2e-31 Score=235.37 Aligned_cols=220 Identities=16% Similarity=0.127 Sum_probs=176.5
Q ss_pred HHHHHHHHhhccchhHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhchh--hhhh----cCCCC
Q 024055 23 KNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVK--IDKI----NKPDL 96 (273)
Q Consensus 23 ~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~~--~D~~----n~~~R 96 (273)
.+.+.|++++||+++..++.|++.|.++|.+....++++.+++.++++++++..+|..|||+|++ .|.. .+.++
T Consensus 6 ~~~~~wl~~~rP~Tl~aai~Pv~~G~a~A~~~~~~f~~~~~ll~Li~~~~iq~~vN~~NdY~D~~KG~D~~g~~~~~~~g 85 (303)
T COG1575 6 SKTQLWLELARPKTLPAAIAPVIVGTALAFWYGKSFNLLVALLALIAAILLQILVNLANDYFDYKKGTDTHGPDRLKQSG 85 (303)
T ss_pred HHHHHHHHhcCccchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCccccccc
Confidence 45689999999999999999999999999766556888888888999999999999999999996 4642 22345
Q ss_pred ccccCcCCHHHHHHHHHHHHHHHHHHH----HHhchHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhhh
Q 024055 97 PLASGDFSIKTGVAITLTCAMMSLAMG----IMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVG 172 (273)
Q Consensus 97 pl~~G~is~~~a~~~~~~~~~l~l~l~----~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~ 172 (273)
-+...+++++..+...+.+...+.+++ ...++ .+++.++++.+.+++|+. +|+++++.| +||+.++.++|.+
T Consensus 86 ~I~~~~~k~~~~l~l~l~~~~g~~llg~~~~~~s~~-~~l~lG~l~~~~g~~YTg--Gp~PlgY~g-LGEi~~~vffG~l 161 (303)
T COG1575 86 LIVRQSMKPALILSLALFLLAGLALLGVILAALSDW-LVLLLGLLCIAAGILYTG--GPFPLGYMG-LGEIFVGVFFGPL 161 (303)
T ss_pred eeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHheeeecc--CCcCcccCC-HHHHHHHHHHHHH
Confidence 556667777777777766655444443 33344 455556788899999999 999999999 5999999999987
Q ss_pred HHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHHHhhh
Q 024055 173 IQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDL 252 (273)
Q Consensus 173 ~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~~~~ 252 (273)
.+.+.|+. |+ + ..++..+...+.+.+.+.+++..||+||+|+|+|+||+|+|+++|+++++++...++..+++
T Consensus 162 ~v~g~~yi-qt----~--~~~~~~ll~slp~gil~~~Il~aNNirDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~a~l 234 (303)
T COG1575 162 IVLGAYYI-QT----G--RLSWAILLPSLPVGILIANILLANNLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVVAYL 234 (303)
T ss_pred HHHHHHHH-hc----c--cchHHHHHHHHHHHHHHHHHHHhcccccchhHHhcCCcceeeeeccHhHHHHHHHHHHHHHH
Confidence 77777653 32 2 34555566666777777889999999999999999999999999999999999999888877
Q ss_pred h
Q 024055 253 E 253 (273)
Q Consensus 253 ~ 253 (273)
.
T Consensus 235 ~ 235 (303)
T COG1575 235 A 235 (303)
T ss_pred H
Confidence 4
No 28
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=100.00 E-value=2.6e-31 Score=237.60 Aligned_cols=213 Identities=13% Similarity=0.038 Sum_probs=169.5
Q ss_pred HHHhhccchhHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhchhh--hhhcCCCCccccCcCCH
Q 024055 28 LYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVKI--DKINKPDLPLASGDFSI 105 (273)
Q Consensus 28 ~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~~~--D~~n~~~Rpl~~G~is~ 105 (273)
|++.+||+++..++.|+++|.++|....+++++..++++++++++.|.++|.+|||+|++. |+.+. ....++..++
T Consensus 2 w~~a~Rp~tl~~s~~pv~lG~alA~~~~~~f~~~~~ll~li~~l~~q~~~N~~Ndy~D~~~G~D~~~~--~~~~~~~~~~ 79 (285)
T TIGR02235 2 WLAAIKPPLYSVAVMPILVGTAVAWGQGGVFHLDRFALFLIAAILILAWINLTNDVFDSDTGIDRFKL--HSIVNLTGSR 79 (285)
T ss_pred hHHHhhhhHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccc--CCcccccCcH
Confidence 6789999999999999999999986544578888887888999999999999999999975 76422 1222333457
Q ss_pred HHHHHHHHHHHHHHHHHH----HHhchHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhhhHHHHHHHHH
Q 024055 106 KTGVAITLTCAMMSLAMG----IMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHI 181 (273)
Q Consensus 106 ~~a~~~~~~~~~l~l~l~----~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~~~~~~ 181 (273)
++....+..+..+++..+ +..+ |..+..+.++++.+++||. ||+++|+++ +||+.++.++|.++..+.++.
T Consensus 80 ~~v~~~~~~~~~ia~~~g~~L~~~~~-~~~l~lg~~g~~~~~~Yt~--gP~~l~y~g-LGE~~v~l~~G~l~v~g~~yv- 154 (285)
T TIGR02235 80 SLVFWLANFFLLIGLVGIAALSWRWQ-ITVLALVGLCCFLGYLYQG--PPFRLGYQG-LGEPICWLCFGPLAIAAALYA- 154 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHhhcC--CCcccCCCC-ccHHHHHHHHHHHHHHHHHHH-
Confidence 888877777766665544 3334 4444445678889999999 999999999 599999999998777777654
Q ss_pred HHHhhccccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHHHhhhh
Q 024055 182 QKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDLE 253 (273)
Q Consensus 182 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~~~~~ 253 (273)
|+ + .+++..++..+..++.+.++++.||+||+|+|+++|+||+|+++|+|+++++...++..+++.
T Consensus 155 qt----~--~~~~~~~l~sl~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~ 220 (285)
T TIGR02235 155 QS----Q--SFSLIPWKASILVGLATTLILFCSHFHQVEDDLAHGKRSPVVRLGTKLAAKIVPWVISLSYVV 220 (285)
T ss_pred hC----C--cCcHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCcceeheecHHhHHHHHHHHHHHHHHH
Confidence 22 2 345555666667777888899999999999999999999999999999999999998877773
No 29
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=100.00 E-value=4.6e-32 Score=243.43 Aligned_cols=212 Identities=16% Similarity=0.166 Sum_probs=165.9
Q ss_pred hHHHHHHHHHhhccchhHHHH---HHHHHHHHhhcccCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcC-C-C
Q 024055 21 FLKNLKSLYRFTRPNTLNGLV---IAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVKIDKINK-P-D 95 (273)
Q Consensus 21 ~~~~l~~~~~l~Rp~~~~~~~---~~~~~g~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~~~D~~n~-~-~ 95 (273)
.+.++++|++++||++..... ++.+.|.++|.++.+ ++..+++.+++.+++++++|++|||+|+|.|+.++ + +
T Consensus 5 ~~~~~~~y~~L~R~~kp~~~~l~~~~~~~g~~lA~~~~~--~~~~~~l~~lg~~~~~~a~~~~Nd~~D~~iD~~~~Rt~~ 82 (290)
T PRK12870 5 LEPTWLAIIRLLRWDKPAGRLILMIPALWAVFLAAHGLP--PLPLVGIIILGALATSAAGCVVNDLWDRDIDPQVERTRF 82 (290)
T ss_pred cchhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHccCCC--CHHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCcccC
Confidence 456789999999998866554 688888888855433 34444466788889999999999999999998754 3 8
Q ss_pred CccccCcCCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhhhHHH
Q 024055 96 LPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQF 175 (273)
Q Consensus 96 Rpl~~G~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l 175 (273)
||+++|++|++|+..++..+.++++.+++.+++.++.++. .+.+..+.|+. .||++.++++..|..+|. .++
T Consensus 83 RPL~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~~-~~~~~~~~Y~~------~KR~t~~~~~~lg~~~~~-~~l 154 (290)
T PRK12870 83 RPLASRRLSVKVGIVIAIVALLCAAGLAFFLNPLSFWLCV-AAVPVIFLYPL------AKRVFPVPQLVLAIAWGF-AVL 154 (290)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHhhh------hhhccccceeeehHHHHh-HHH
Confidence 9999999999999999999999999998888887665543 45566788886 788888899888888774 345
Q ss_pred HHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHHH
Q 024055 176 SFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKN 249 (273)
Q Consensus 176 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~ 249 (273)
+.|.+ ..| ..+...++.....++|+.+.+++++++|+|+|+++|+||+|+++|+|++.+++....+.
T Consensus 155 ~g~~a----~~g---~~~~~~~~l~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~~~~~~~~~~~~ 221 (290)
T PRK12870 155 ISWSA----VTG---HLDLGTWLLWAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRYAPEAIGLFFALT 221 (290)
T ss_pred HHHHH----HcC---CCCHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccccHHHHHHHHHHH
Confidence 55543 223 23333344445667788999999999999999999999999999999999887754433
No 30
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=4e-31 Score=236.48 Aligned_cols=214 Identities=14% Similarity=0.100 Sum_probs=162.9
Q ss_pred HHHHHHHhhccchhHHHHHHHHHHHHhhcc-cCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcC--CCCcccc
Q 024055 24 NLKSLYRFTRPNTLNGLVIAVTSICCLPLQ-NLGDLTPTFFMETVVPAALMAIYMTAINQLVDVKIDKINK--PDLPLAS 100 (273)
Q Consensus 24 ~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~~~D~~n~--~~Rpl~~ 100 (273)
++|+++++.||++.+.+....+.|.+.+.. ....+++..+++..++.+++++++|++|||+|+|.|++|+ ++||+++
T Consensus 1 ~~~~~~~l~r~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~s 80 (284)
T PRK12888 1 RVRAFLRLVAIEHSVFALPFAYIAALTAMFASDGSVHWADLLLVTVAMVGARTFAMAANRIIDREIDARNPRTAGRELVT 80 (284)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhCCCCCCCCCCCCCCCC
Confidence 368999999998877765444445544421 0122345455567789999999999999999999999997 6999999
Q ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhhhHHHHHHHH
Q 024055 101 GDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIH 180 (273)
Q Consensus 101 G~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~~~~~ 180 (273)
|++|++|++.++..+..+++.++..+|+.++.++ .++++..+.|+. .||++.++++..|...+. .++++|.+
T Consensus 81 G~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~l~-~~~~~~~~~Y~~------~Kr~t~~~~~~lg~~~~~-~~l~g~~a 152 (284)
T PRK12888 81 GAVSVRTAWTGALVALAVFLGAAALLNPLCLALA-PLAVAPLVVYPY------AKRFTNFPHAILGLAQAV-GPVGAWIA 152 (284)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH------hhcccchhhHHHHHHHHH-HHHHHHHH
Confidence 9999999999998888888888777787666544 344455678876 899998999998888664 34455554
Q ss_pred HHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHHHhhh
Q 024055 181 IQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDL 252 (273)
Q Consensus 181 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~~~~ 252 (273)
..|. .++..++..+..++|+.+.+++|+++|+|+|+++|+||+|+++|+|++.+++..+..++++
T Consensus 153 ----~~g~---~~~~~~ll~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~~~a~~~~~~~~~~~~~ 217 (284)
T PRK12888 153 ----VTGT---WSWPAVLLGLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGVRAALWASRVAHVVTFA 217 (284)
T ss_pred ----HcCC---CCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCchhHHHHHHHHHHHHHH
Confidence 2232 3333344445667788899999999999999999999999999999999877776655554
No 31
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=100.00 E-value=6e-31 Score=238.32 Aligned_cols=217 Identities=18% Similarity=0.173 Sum_probs=168.9
Q ss_pred hHHHHHHHHHhh---ccchhHHHHHHHHHHHHhhcccC---CCCcHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcC-
Q 024055 21 FLKNLKSLYRFT---RPNTLNGLVIAVTSICCLPLQNL---GDLTPTFFMETVVPAALMAIYMTAINQLVDVKIDKINK- 93 (273)
Q Consensus 21 ~~~~l~~~~~l~---Rp~~~~~~~~~~~~g~~la~~~~---~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~~~D~~n~- 93 (273)
.++++++|++++ ||++.....++.+.|.++|.... ...++..+++++++.+++++++|++|||+|+|.|+.++
T Consensus 26 ~~~~~~~y~~L~R~~kP~~~~l~~~p~~~G~~lA~~~~~~~~~~~~~~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~R 105 (314)
T PRK12878 26 LPPWLRPYAQLARWDRPIGWWLLLWPCWWSAALAAGAAADLGLLLLWHLFLFFVGAIAMRGAGCTYNDIVDRDIDAKVAR 105 (314)
T ss_pred cchhHHHHHHHHccccchhhHHHHHHHHHHHHHhcccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Confidence 557899999999 99999999999999999985431 13454445577889999999999999999999998765
Q ss_pred -CCCccccCcCCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhhh
Q 024055 94 -PDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVG 172 (273)
Q Consensus 94 -~~Rpl~~G~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~ 172 (273)
++||+++|++|++|++.+..++.++|+.+.+..|++.+.++ +++++..+.|+. .||+..+++...|+..+..
T Consensus 106 t~~RPl~sG~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~l~-~~~~~~~~~Y~~------~KR~t~~~~~~~Gl~~~~~ 178 (314)
T PRK12878 106 TRSRPLPSGQVSRKQAKVFMVLQALVGLAVLLQFNWFAIALG-IASLAIVAAYPF------MKRITWWPQFFLGLAFSWG 178 (314)
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH------HHhcCCcchHHHHHHHHHH
Confidence 48999999999999999999999999988887787666554 466667889986 8998877887777765533
Q ss_pred HHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHHHhhh
Q 024055 173 IQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDL 252 (273)
Q Consensus 173 ~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~~~~ 252 (273)
+..+ |.+ ..| +.++..++.....++|+...+.+++++|+|+|+++|+||+|+++|++++++++....+...+
T Consensus 179 ~l~g-~~a----~~g---~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~ 250 (314)
T PRK12878 179 ALMG-WAA----HFG---SLSLAAVLLYAGSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGDHTKTWLVLFYGLAVLL 250 (314)
T ss_pred HHHH-HHH----HhC---CCchHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHcCCcccchHhchhhHHHHHHHHHHHHHH
Confidence 3333 543 223 23333333334556678888999999999999999999999999999999988655554433
No 32
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=99.98 E-value=2.7e-31 Score=237.68 Aligned_cols=217 Identities=20% Similarity=0.199 Sum_probs=164.1
Q ss_pred HHHHHhhccchhHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcC--CCCccccCcC
Q 024055 26 KSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVKIDKINK--PDLPLASGDF 103 (273)
Q Consensus 26 ~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~~~D~~n~--~~Rpl~~G~i 103 (273)
|+|++++||+++..+.+++..|+++|.... +.++..++++.++.+++++++|++|||+|+|.|++|+ |+||+++|++
T Consensus 1 ~~~~~l~rp~~~~~~~~~~~~g~~la~~~~-~~~~~~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~i 79 (280)
T TIGR01473 1 KDYLQLTKPRIISLLLITAFAGMWLAPGGA-LVNPPLLLLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVTGRI 79 (280)
T ss_pred CchHHHccHHHHHHHHHHHHHHHHHhCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCCCCc
Confidence 468999999999999999999999985432 2455555567788999999999999999999999876 6999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHH-HHhchHHHHHHHHHHHH-HHhHhcCCCCCcccccchhHHHHHHHHHHhhhHHHHHHHHH
Q 024055 104 SIKTGVAITLTCAMMSLAMG-IMIGSPPLAWGLILWFI-LVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHI 181 (273)
Q Consensus 104 s~~~a~~~~~~~~~l~l~l~-~~~~~~~~~~~~~~~~~-~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~~~~~~ 181 (273)
|++++..+++.+.++|+.+. +..|+....++ .++.+ ..+.||. .+||++.. +..++...|..+++++|.+
T Consensus 80 s~~~a~~~~~~~~~~g~~il~~~~~~~~~~l~-~~~~~~~~~~Yt~-----~lKr~~~~-~~~v~~~~g~~~~l~g~~a- 151 (280)
T TIGR01473 80 SPREALAFGLLLGVLGVAILAAFVNPLAALLG-LFGIFFYVIVYTI-----WLKRRTPQ-NTVIGGFAGAVPPLIGWAA- 151 (280)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHhhcCh-----hhccCCch-hHHHHHHHHHHHHHHHHHH-
Confidence 99999999999999998844 44676655443 34443 3788996 58999975 5566667777777777764
Q ss_pred HHHhhccccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHHHhhhhccCCCC
Q 024055 182 QKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDLEDESPLP 259 (273)
Q Consensus 182 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~~~~~~~~~~~ 259 (273)
..| ..+...++.....++|+.......+.+|+|+|+++|+||+|+++|+|++.+......+.... .+++|
T Consensus 152 ---~~g---~~~~~~~~l~~~~~~w~~~~~~~~a~~~~~dd~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~--~~~~~ 221 (280)
T TIGR01473 152 ---VTG---SISLGAWLLFAIIFLWQPPHFWALALKYKDDYRAAGIPMLPVVKGERITKRQIALYTAALLP--VSLLL 221 (280)
T ss_pred ---hcC---CCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHCCCccCCcccCHHHHHHHHHHHHHHHHH--HHHHH
Confidence 113 23333333334455566555555668999999999999999999999999887777666555 44443
No 33
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=99.98 E-value=3.5e-31 Score=237.94 Aligned_cols=213 Identities=22% Similarity=0.321 Sum_probs=170.7
Q ss_pred HHHHHHHHhhccchhHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcCC--CCcccc
Q 024055 23 KNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVKIDKINKP--DLPLAS 100 (273)
Q Consensus 23 ~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~~~D~~n~~--~Rpl~~ 100 (273)
..++.++|..||.++.....+...|..++...+++ .....+.++++++++.++|++||+.|+|+|++|+| +||+++
T Consensus 11 ~~~~~l~r~~r~i~~l~~~~~~~~~~~~~~~~~~~--~~~~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~rt~~RPl~s 88 (289)
T COG0382 11 KALLKLLRLDRPIFNLLLLLPALLGLLLAASGLPS--LKLLLLAFLAFFLARSAGYVINDLADREIDRINPRTKNRPLPS 88 (289)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCch--HHHHHHHHHHHHHHHHHhHHHHHHhhhhccCCCCCccCCCCCC
Confidence 44566677777777777777888888777533333 33444677888899999999999999999999998 999999
Q ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhhhHHHHHHHH
Q 024055 101 GDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIH 180 (273)
Q Consensus 101 G~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~~~~~ 180 (273)
|++|+++++.+.+++.++++.+++.+++..+.+. ..+.++.+.| . ++||.++++++++|..+|..+..|...
T Consensus 89 G~vS~~~a~~~~~~~~~~~~~~a~~l~~~~~~l~-~~~~~l~~~Y-~-----~~Kr~~~~~~~~lg~~~~~~~~~g~~a- 160 (289)
T COG0382 89 GRVSVKEALLLAILLLLLGLALALLLNPLAFLLS-LAALVLALAY-P-----FLKRFTFLPQLVLGLAFGLGALAGAAA- 160 (289)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHH-H-----HhhcCCchHHHHHHHHHHHHHHHHHHH-
Confidence 9999999999999999999999999998776554 4677788999 4 599999999999999998555444322
Q ss_pred HHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHHHhhh
Q 024055 181 IQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDL 252 (273)
Q Consensus 181 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~~~~ 252 (273)
..+ +.+...++..+...+|+.+++++++++|+|+|++.|+||+|+.+|+|++..++......+.+
T Consensus 161 ----~~~---~~~~~~~~l~~~~~l~~~~~~~i~~~~D~e~D~~~G~~s~~~~~G~~~a~~l~~~~~~~~~~ 225 (289)
T COG0382 161 ----VGG---SLPLLAWLLLLAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALALLLLLASAL 225 (289)
T ss_pred ----HhC---ccchHHHHHHHHHHHHHHHHHHHHhccCccchHhcCCcchHHHhCchhHHHHHHHHHHHHHH
Confidence 222 12333344445667788999999999999999999999999999999999999998865554
No 34
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=99.98 E-value=5e-31 Score=236.10 Aligned_cols=214 Identities=20% Similarity=0.212 Sum_probs=162.5
Q ss_pred HHHHHHHHHhhccchhH---HHHHHHHHHHHhhcccCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcC--CCC
Q 024055 22 LKNLKSLYRFTRPNTLN---GLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVKIDKINK--PDL 96 (273)
Q Consensus 22 ~~~l~~~~~l~Rp~~~~---~~~~~~~~g~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~~~D~~n~--~~R 96 (273)
++++++|++++|+++.. ...+|.+.|..+|..+.++ +..+++.+++.+++++++|++|||+|+|.|++++ ++|
T Consensus 2 ~~~~~~y~~L~R~~kp~~~~l~~~p~~~g~~la~~~~~~--~~~~~l~~~g~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~R 79 (282)
T PRK12848 2 QNRLLAYARLMRLDKPIGTLLLLWPTLWALWLAADGIPD--LWVLVVFVLGVFLMRAAGCVINDYADRDFDGHVKRTKNR 79 (282)
T ss_pred chhHHHHHHHHCccchHHHHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHHHHHHHHHHhhHHhccCCCCCCCCCC
Confidence 35689999999876554 4446777788887544333 3334456678889999999999999999998765 489
Q ss_pred ccccCcCCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhhhHHHH
Q 024055 97 PLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFS 176 (273)
Q Consensus 97 pl~~G~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~ 176 (273)
|+++|++|++|++.++..+.++++.+++.+++....++ ..+.+..+.|+. .||++.++++..|+..|..+..
T Consensus 80 Pl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~-~~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~g~~~~~- 151 (282)
T PRK12848 80 PLASGAVSEKEALALFVVLVLVAFLLVLTLNTLTIWLS-VAALALAWIYPF------MKRYTHLPQVVLGAAFGWGIPM- 151 (282)
T ss_pred CCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHh------HHhcCcccHHHHHHHHHHHHHH-
Confidence 99999999999999999999999988888887666554 455566788865 7888888998888888754433
Q ss_pred HHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHHHhhh
Q 024055 177 FFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDL 252 (273)
Q Consensus 177 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~~~~ 252 (273)
+|.+ ..+ ..+...++.....++|+.+.++.++++|+|+|+++|+||+|+++|+|++.+......+...+
T Consensus 152 g~~a----~~~---~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~ 220 (282)
T PRK12848 152 AFAA----VQG---SVPLEAWLLFLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGRYDKLIIGLLQLATLAL 220 (282)
T ss_pred HHHH----HhC---CCcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhccccHHHHHHHHHHHHHH
Confidence 4443 122 23333344444566778888999999999999999999999999999998887655554444
No 35
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=99.97 E-value=1.5e-30 Score=234.89 Aligned_cols=222 Identities=16% Similarity=0.228 Sum_probs=166.4
Q ss_pred hHHHHHHHHHhhccchhHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcC--CCCcc
Q 024055 21 FLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVKIDKINK--PDLPL 98 (273)
Q Consensus 21 ~~~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~~~D~~n~--~~Rpl 98 (273)
.++++|+|++++||+++..+.++.+.|++++..+ +.++...+.++++..+.++++|++|||+|+|.|+.++ ++||+
T Consensus 9 ~~~~l~~~~~L~RP~~~~~~~~~~~~G~~la~~~--~~~~~~~~~~~lg~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~RPl 86 (306)
T PRK13362 9 WEASLKDYIQVTKPGIIFGNVISVAGGFFLASKG--HVDPVLMLAAVIGLSLVVASGCALNNCIDRDIDAKMQRTRNRVT 86 (306)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccC--CCCHHHHHHHHHHHHHHHHHHHHHhChHHhCcCCCCCCCCCCCC
Confidence 3556899999999999999999999999998433 2344444456678888899999999999999999764 58999
Q ss_pred ccCcCCHHHHHHHHHHHHHHHHHHHH-HhchHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhhhHHHHH
Q 024055 99 ASGDFSIKTGVAITLTCAMMSLAMGI-MIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSF 177 (273)
Q Consensus 99 ~~G~is~~~a~~~~~~~~~l~l~l~~-~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~~ 177 (273)
++|++|+++|+.+++.+..+|+.++. ..|.....+..+..+...+.||. ++||++.++++..+.. |.++++.+
T Consensus 87 psG~is~~~A~~~~~~l~~~g~~ll~~~~n~~~~~l~~~~~~~~~~~Yt~-----~lKr~t~~~~~vgg~~-ga~p~l~G 160 (306)
T PRK13362 87 VTGEISLGEALGFGLALGVAGFGLLAAFTNPLAALFAAFGYVVYVGVYSL-----YLKRNSVYGTLVGSLS-GAMPPVVG 160 (306)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH-----HHhccCcHhHHHHHHH-HHHHHHHH
Confidence 99999999999999999999988654 45655443332222335678986 6999998887655554 44566666
Q ss_pred HHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHHHhhhhccCC
Q 024055 178 FIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDLEDESP 257 (273)
Q Consensus 178 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~~~~~~~~~ 257 (273)
|.+ ..| +.+...++....+++|+.+.....+++|+|+|+++|+||+|+++|+|++++.......+... .|+
T Consensus 161 ~~a----~~g---~~~~~~~~l~~~~~~W~~~h~~~~ai~~~~Dy~~aG~~~lpv~~G~~~t~~~~~~~~~~~~~--~s~ 231 (306)
T PRK13362 161 YCA----VTG---QFDAGALILLLMFSLWQMPHSYAIAIFRFNDYAAAGIPVLPVARGIAKTKLHIVLYILVFAL--VTA 231 (306)
T ss_pred HHH----HcC---CCcHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHCCCeeeceecChHHHHHHHHHHHHHHHH--HHH
Confidence 654 223 23333444445667788887888889999999999999999999999999876666555444 444
Q ss_pred CC
Q 024055 258 LP 259 (273)
Q Consensus 258 ~~ 259 (273)
+|
T Consensus 232 l~ 233 (306)
T PRK13362 232 LL 233 (306)
T ss_pred HH
Confidence 44
No 36
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=99.97 E-value=4.3e-30 Score=228.69 Aligned_cols=216 Identities=20% Similarity=0.234 Sum_probs=149.9
Q ss_pred HHHHHHhhccchhHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcCCCCccccCcCC
Q 024055 25 LKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVKIDKINKPDLPLASGDFS 104 (273)
Q Consensus 25 l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~~~D~~n~~~Rpl~~G~is 104 (273)
+|.+++++||.+|+.+.+|+..|+.+| ++.++ +..++.++......+.+.|++|||+|+|.|+.|++++.. +|.++
T Consensus 1 ~~~~~~~~rP~~wi~~a~pf~~g~~la-~~~~~--~~~l~~~l~~~~~~n~am~~~Ndy~D~~~d~dn~r~~g~-~g~i~ 76 (282)
T PRK13105 1 IRQLLLSSRPISWINTAYPFAAAYLLA-GGEID--WLFVVGTVFFLIPYNLAMYGINDVFDYESDLRNPRKGGV-EGAVL 76 (282)
T ss_pred ChhHHHhcccHHHhccHHHHHHHHHHH-CCCCC--hHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCcccCCC-CCccC
Confidence 368899999999999999999999999 43333 322211211222333343456999999999999764332 58899
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHhchHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhhhHHHHHHHH
Q 024055 105 IKTGVAITLTCAMMSLA----MGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIH 180 (273)
Q Consensus 105 ~~~a~~~~~~~~~l~l~----l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~~~~~ 180 (273)
++|..........++.+ .....+++.......++++.++.||. ||.|+|++++.++++.+..+......|.+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~l~~~ai~~~~~YS~--~p~rlk~~gl~d~~t~~~~f~~~~v~G~~~- 153 (282)
T PRK13105 77 DRAMHRTTLWASVVTTVPFLVVLLAVGSWASGLVLAVSVFAVVAYSA--PGLRFKERPFLDSLTSSTHFVSPALYGLVL- 153 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcC--CCccccccchHHHHHHHHHHHHHHHHHHHH-
Confidence 99885554444433322 12233233343444577788999999 999999999877765544433223344332
Q ss_pred HHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHHHhhhhc
Q 024055 181 IQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDLED 254 (273)
Q Consensus 181 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~~~~~~ 254 (273)
+ ++ ..++..++....+++++.+++++||+||+|+||++|+||+|+++|+|++.+++..++.++++..
T Consensus 154 ----~-~~--~~~~~~~l~~~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~ 220 (282)
T PRK13105 154 ----A-GA--PFTAALWAVLAAFFLWGMASHAFGAVQDVVADREAGIASIATVLGARRTVRLAVGLYAAAAVLM 220 (282)
T ss_pred ----h-hc--cccHHHHHHHHHHHHHHHHHHHHHhCcchHhHHHcCCccchHHhcHHHHHHHHHHHHHHHHHHH
Confidence 2 32 2333344555567778889999999999999999999999999999999999999999887643
No 37
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=99.97 E-value=3.4e-30 Score=230.56 Aligned_cols=208 Identities=18% Similarity=0.179 Sum_probs=154.7
Q ss_pred HHHhhccchhHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcC--CCCccccCcCCH
Q 024055 28 LYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVKIDKINK--PDLPLASGDFSI 105 (273)
Q Consensus 28 ~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~~~D~~n~--~~Rpl~~G~is~ 105 (273)
+.|+.||..+....++...|+.+|.......++..+.+..++.++++.++|++|||+|+|.|+.|+ |+||+++|++|+
T Consensus 7 l~R~~kp~~~~l~~~~~~~g~~la~~~~~~~~~~~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~ 86 (281)
T TIGR01474 7 LMRADKPIGTLLLLWPCLWSLLLAAQAGGIPPLYLLGLFTVGAILMRGAGCVINDIWDRDFDPQVERTKSRPLASGAVSV 86 (281)
T ss_pred HHccccHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHHHHhHhhhcccccCCcccCCCCCCCCcCH
Confidence 344445555566677888898888541111133334456678888999999999999999999764 489999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 024055 106 KTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYV 185 (273)
Q Consensus 106 ~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~~~~~~~~~~ 185 (273)
+|++.++.++.++++.+++.+|+....++ +++++..+.|+. .||++.++++..|...+..+..+ |.+ .
T Consensus 87 ~~a~~~~~~~~~~~~~l~~~l~~~~~~l~-~~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~~~~~~~g-~~a----~ 154 (281)
T TIGR01474 87 RQAILFLLVQLLVALGVLLQLNPLTILLG-VASLALVATYPF------MKRITYWPQLVLGLAFGWGALMG-WAA----V 154 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHhch------hcccccccHHHHHHHHHHHHHHH-HHH----H
Confidence 99999999999999999888887766554 466677899986 89998889988888776434344 443 2
Q ss_pred hccccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHHHh
Q 024055 186 LGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNM 250 (273)
Q Consensus 186 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~~ 250 (273)
.| +.++..++.....++|+.+.+.+++++|+|+|+++|+||+|+++|+|++++......+..
T Consensus 155 ~g---~~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~~~~~~ 216 (281)
T TIGR01474 155 TG---DLSTAAWVLYLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGDNTKPWLGGLYALMI 216 (281)
T ss_pred cC---CCcHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhhhhHHHHHHHHHHHH
Confidence 23 233333333345667788899999999999999999999999999999766655544433
No 38
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=99.97 E-value=3.7e-29 Score=224.11 Aligned_cols=206 Identities=18% Similarity=0.209 Sum_probs=155.4
Q ss_pred HHHHHHHHHhhccchhHHH---HHHHHHHHHhhc--ccCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcC--C
Q 024055 22 LKNLKSLYRFTRPNTLNGL---VIAVTSICCLPL--QNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVKIDKINK--P 94 (273)
Q Consensus 22 ~~~l~~~~~l~Rp~~~~~~---~~~~~~g~~la~--~~~~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~~~D~~n~--~ 94 (273)
++++++|+|++|.++.... .+|...|..++. ++.+ ++..+++..++.+++++++|++||++|+|+|++|+ |
T Consensus 3 ~~~~~~y~~L~Rl~kp~~~~l~~~p~~~~~~l~a~~~~~~--~~~~l~l~~~g~~~~~~a~~~~Nd~~Dr~iD~~~~RT~ 80 (289)
T PLN02809 3 PPSLRPYAKLARLDKPIGTWLLAWPCMWSIALAAPPGSLP--DLKMLALFGCGALLLRGAGCTINDLLDRDIDKKVERTK 80 (289)
T ss_pred chhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccCCCC--cHHHHHHHHHHHHHHHHHHHHHHhhHHhccccCCCCCC
Confidence 3578889999888775544 456666766654 2223 33334466788899999999999999999999875 5
Q ss_pred CCccccCcCCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhhhHH
Q 024055 95 DLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQ 174 (273)
Q Consensus 95 ~Rpl~~G~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~ 174 (273)
+||+++|++|++|++.+...+.++++.+++.+|+..+.++ .++++..+.|+. +||++.++++..|...+..+
T Consensus 81 ~RPL~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~~~~~~~Y~~------~KR~t~~~~~~lg~~~~~~~- 152 (289)
T PLN02809 81 LRPIASGALTPFQGVGFLGAQLLLGLGILLQLNNYSRILG-ASSLLLVFTYPL------MKRFTFWPQAFLGLTFNWGA- 152 (289)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHhH------HHhcCcchHHHHHHHHHHHH-
Confidence 9999999999999999999999999999888887666554 355666788986 99999999988888766433
Q ss_pred HHHHHHHHHHhhccccchhhHHHH-HHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHH
Q 024055 175 FSFFIHIQKYVLGRSVVITRSLIF-TTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELL 244 (273)
Q Consensus 175 l~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~ 244 (273)
+..|.+ +.|. .++..+. ......+|+.+.+.+++++|+|+|+++|+||+|+++|+|+..+++.
T Consensus 153 l~g~~a----v~g~---~~~~~~~~l~~~~~~W~~~~d~~ya~~D~e~D~~~Gi~sl~v~~G~~~~~~i~~ 216 (289)
T PLN02809 153 LLGWAA----VKGS---LDPAVVLPLYASGVCWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDDTKLWLTG 216 (289)
T ss_pred HHHHHH----HhCC---CChHHHHHHHHHHHHHHHHHHHHHHHhchhhHHhCCCcccchhhcHHHHHHHHH
Confidence 444543 2332 2222222 2334556778889999999999999999999999999997777664
No 39
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=99.97 E-value=1.4e-28 Score=219.77 Aligned_cols=215 Identities=14% Similarity=0.143 Sum_probs=158.5
Q ss_pred HHHHHHHHhhccchhHHHHHHHHHHHHhhc------cc-CCCCcHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcC--
Q 024055 23 KNLKSLYRFTRPNTLNGLVIAVTSICCLPL------QN-LGDLTPTFFMETVVPAALMAIYMTAINQLVDVKIDKINK-- 93 (273)
Q Consensus 23 ~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~------~~-~~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~~~D~~n~-- 93 (273)
+++|.+.++.|..+.+-++--...|+++|. ++ +...++..+++..++.+.+..++|++||+.|+|.|++|+
T Consensus 2 ~~~~~~~~~i~~~ht~Falpfa~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~a~~~~Rsag~~~Nd~~DrdiD~~~~RT 81 (300)
T PRK12876 2 MRIKYFQQLINCKYALFSALFLSASTVFALSLPEISFSLFSLGGIKTISLGGSAFFCARTVGIIVNQIIDCAIDKKNPRT 81 (300)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCCCCCC
Confidence 358899999999664433322345777774 22 001234445567788999999999999999999999998
Q ss_pred CCCccccCcCCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhhhH
Q 024055 94 PDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGI 173 (273)
Q Consensus 94 ~~Rpl~~G~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~ 173 (273)
++||+++|++|++||+.+...+.++++++++.+|+.+..++. ++++..+.|+. +||+++++++..|...+. .
T Consensus 82 ~~RPLpsG~is~~~A~~~~~~~~~~~~~l~~~ln~l~~~l~~-~~~~~~~iY~~------~KR~t~~~~~vLGl~~~~-~ 153 (300)
T PRK12876 82 SSRVLPAKLLSINFSMLLLTLCSFLFLSLCWLLNPLCFSLAV-LSTLLMIIYPY------TKRVTFLCHWILGLVYYL-A 153 (300)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHh------HhcCCchhHHHHHHHHHH-H
Confidence 599999999999999999987777778888888987776654 55566688986 999999999988887774 3
Q ss_pred HHHHHHHHHHHhhccccchhhHH----HHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHHH
Q 024055 174 QFSFFIHIQKYVLGRSVVITRSL----IFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKN 249 (273)
Q Consensus 174 ~l~~~~~~~~~~~g~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~ 249 (273)
+++.|.+ +.+.. .++.. ++.....++|..+.+++++++|+|+|++.|+||+|+++|++++.+++..++.+
T Consensus 154 ~l~~~~A----v~~~~--~~~~l~~~~~lw~~~~~~~~~g~DiiYa~qD~e~D~~~Gl~Slpv~fG~~~a~~ia~~~~~l 227 (300)
T PRK12876 154 ILMNFFA----IIETP--LSFSLFCMASLWGISFGMIIAANDIIYAIQDLEFDRKEGLFSIPARFGEKKAIRIASANLIA 227 (300)
T ss_pred HHHHHHH----HhcCc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHhhHHHcCCccchHHHCchhHHHHHHHHHHH
Confidence 4444543 22321 12211 11123344566789999999999999999999999999999987777655554
Q ss_pred hh
Q 024055 250 MD 251 (273)
Q Consensus 250 ~~ 251 (273)
+.
T Consensus 228 ~~ 229 (300)
T PRK12876 228 SA 229 (300)
T ss_pred HH
Confidence 33
No 40
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=99.96 E-value=5.3e-28 Score=215.70 Aligned_cols=214 Identities=17% Similarity=0.216 Sum_probs=138.6
Q ss_pred hHHHHHHHHHhhccchhHHHHHHHHHHHHhhcccCCC-CcHHHHHHHHHHH--HHHHHHHhhhhhhhchhhhhhcCCCCc
Q 024055 21 FLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGD-LTPTFFMETVVPA--ALMAIYMTAINQLVDVKIDKINKPDLP 97 (273)
Q Consensus 21 ~~~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~-~~~~~~~l~~l~~--~~~~~~~~~~Nd~~D~~~D~~n~~~Rp 97 (273)
...++|.+++++||+++..+..|++.|.++|..+.++ +++.. +++++. +..+.+.+.+|||+|+|+|+.|++++.
T Consensus 4 ~~~~~~~l~~l~RP~~~~~~~~p~l~G~~lA~~~~~~~~~~~~--~~ll~~~~i~~Nl~~y~iND~~D~D~Dr~~prk~~ 81 (282)
T PRK12875 4 LGDRLRYLLVLSRPRFWLYLAGPVVVGVAYAADSVADLFSPAA--VALFAYFLFPANVFLYGVNDVFDADTDELNPKKDR 81 (282)
T ss_pred hHHHHHHHHHHhCccchHHHHHHHHHHHHHHhccCcccccHHH--HHHHHHHHHHHHHHHhcchhhhhhhccccCCCccC
Confidence 3567889999999999999999999999998654322 33322 222222 233445556899999999999977654
Q ss_pred cccCcCC--HHHHHHHHH-HHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhhhHH
Q 024055 98 LASGDFS--IKTGVAITL-TCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQ 174 (273)
Q Consensus 98 l~~G~is--~~~a~~~~~-~~~~l~l~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~ 174 (273)
.+.+. .+.+..... ....+++.+.+..++... +..+.+++.++.||. ||+|+|++++.+..+.+... ++.
T Consensus 82 --~r~~~~s~~~~~~~~~~l~~~l~l~l~~~~~~~~~-~~ll~~i~~~~~YS~--pP~rlk~~p~~~~~~~g~~~--~~~ 154 (282)
T PRK12875 82 --EREVRYRGDRRVLVAVALSGALALAFLLVLPPAAW-PALLAFLVLSVEYSA--PPLRFKTTPVLDSLSNGLYI--LPG 154 (282)
T ss_pred --CCCccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHcC--CCccchhccHHHHHHHHHHH--HHH
Confidence 12122 122222111 122333333333343222 223455678999999 99999999975543333321 233
Q ss_pred HHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHHHhhh
Q 024055 175 FSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDL 252 (273)
Q Consensus 175 l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~~~~ 252 (273)
++.|.. + .| +.++..++. ..++++.+++++||++|+|+|+++|+||+|+++|+|++++++..+++++.+
T Consensus 155 ~~~y~~-~---tg---~~~~~~l~~--a~~l~~~~~~~in~i~Die~D~~aGi~Tlav~lG~~~a~~~~~~~~~~a~~ 223 (282)
T PRK12875 155 VAAYAL-V---SG---SLPPLLAVA--GGWLWAMGMHTFSAIPDIEPDRAAGIRTTATVLGERRTYAYCAACWLLAAA 223 (282)
T ss_pred HHHHHH-H---cC---CCcHHHHHH--HHHHHHHHHHHHHhccCHHHHHHcCCccchhhccHhhHHHHHHHHHHHHHH
Confidence 444442 1 12 234333332 235677889999999999999999999999999999999988888776554
No 41
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=99.96 E-value=1.2e-27 Score=213.87 Aligned_cols=212 Identities=17% Similarity=0.155 Sum_probs=155.3
Q ss_pred HHHHHHHHHhhccchhHHH---HHHHHHHHHhhcccCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcC--CCC
Q 024055 22 LKNLKSLYRFTRPNTLNGL---VIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVKIDKINK--PDL 96 (273)
Q Consensus 22 ~~~l~~~~~l~Rp~~~~~~---~~~~~~g~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~~~D~~n~--~~R 96 (273)
++++++|+|++||+++..+ .++.+.|.+++..+.+ ++...+..+++..++.+++|++||+.|+|+|++|+ ++|
T Consensus 4 ~~~~~~y~~L~R~~Kp~~~~ll~~p~~~g~~la~~~~~--~~~~~~~~~~g~~l~~~a~~~~Nd~~D~~iD~~~~RT~~R 81 (294)
T PRK12873 4 SIKLSPWFELLRWNKPTGRLILLIPAGWSLWLTPSAPP--SLLLLLLIILGGLAVSGAGCIANDLWDRRIDRKVERTKNR 81 (294)
T ss_pred hHhHHHHHHHhCccccchHHHHHHHHHHHHHHccCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCCCC
Confidence 3468899999888776655 4566678777644322 34344467788889999999999999999999876 499
Q ss_pred ccccCcCCHHHHHHHHHHHHHHHHHHHHHh----chHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhhh
Q 024055 97 PLASGDFSIKTGVAITLTCAMMSLAMGIMI----GSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVG 172 (273)
Q Consensus 97 pl~~G~is~~~a~~~~~~~~~l~l~l~~~~----~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~ 172 (273)
|+++|++|++||+.+..++.++++.+.+.+ |+.+..++ .++++....|+. +||++.+.+++.|+..+ .
T Consensus 82 Pl~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~n~l~~~l~-~~~~~~~~~Y~~------~KR~t~~~~~vlg~~~a-~ 153 (294)
T PRK12873 82 PLARGKISLKTAYSLLIVLLLLSLFVVLSLPQPSRNLCLSLA-FLALPPILIYPS------AKRWFAYPQAILALCWG-F 153 (294)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHH-HHHHHHHHHHHH------HHhccccchHHHHHHHH-h
Confidence 999999999999999999999998887665 44454443 344556788887 89999888888877666 4
Q ss_pred HHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHHH
Q 024055 173 IQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKN 249 (273)
Q Consensus 173 ~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~ 249 (273)
.++.+|.+ +.|. .+.....++.....++|+.+.+++++++|+|+|+++|++|+|+++|++.. .....++.+
T Consensus 154 ~~l~gw~A----v~g~-~~~~~~~l~l~~~~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~~~~-~~~~~~~~~ 224 (294)
T PRK12873 154 AVLIPWAA----AEGS-LNGGWPLLFCWLATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGSNAL-KTVQICYFL 224 (294)
T ss_pred HHHHHHHH----HhCC-CchhHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHcCCcccchhcChhhH-HHHHHHHHH
Confidence 45555654 2332 11211223322456678889999999999999999999999999997544 444444333
No 42
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=99.96 E-value=1.7e-27 Score=214.15 Aligned_cols=213 Identities=17% Similarity=0.218 Sum_probs=143.3
Q ss_pred HHHHHHHHhhccchhHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhc---------C
Q 024055 23 KNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVKIDKIN---------K 93 (273)
Q Consensus 23 ~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~~~D~~n---------~ 93 (273)
+++|+|++++||+++.....+++.|.++|......+++..+++.++++.++..++|++|||+|+|.|+.| |
T Consensus 3 ~~~~~~~~l~Rp~~l~~~~~~~~~g~~lA~~~~g~~~~~~~~l~~l~~~l~~~ag~~iND~~D~~~D~~~v~rtm~r~~~ 82 (297)
T PRK12871 3 ETLKAYIDLTRAHFLPAWPLLFCSGLVLAFANYGGFSWELTIKAALIGLFGFEAGFVLNDYVDRKRDRLDVENTLTRYWR 82 (297)
T ss_pred chHHHHHHHHhHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCcchHhhhhhcccc
Confidence 4588999999999888888887788888731111234443432334443444556899999999999864 2
Q ss_pred --CCCccccCcCCHHHHHHHHHHHHHHHHHHHHHhchH---HHHHHHHHHHHHHhHhcCCCCCccccc---chhHHHHHH
Q 024055 94 --PDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSP---PLAWGLILWFILVTAYSIDLPFLRWKR---NAFLAAISI 165 (273)
Q Consensus 94 --~~Rpl~~G~is~~~a~~~~~~~~~l~l~l~~~~~~~---~~~~~~~~~~~~~~~Ys~~~pP~~lK~---~~~~~~~~v 165 (273)
++||+++|++|+++++.+++++.++|+.++..++.. ......+.+.++++.|+. .|| .| .+.+.-
T Consensus 83 P~~~Rpl~sG~is~~~a~~~~i~l~~i~~~l~~~l~~~~~~~~~~l~~~~~~~~~~Y~~------~kr~~~~p-~~~l~G 155 (297)
T PRK12871 83 PFKERPIPSGKLSSKNAFALFILLAAVTSALILTLPYPNSLYVFVIMLYSYGIEAFYQV------KKRNQKYP-VAQLLG 155 (297)
T ss_pred CCCCCccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------cccccccc-HHHHHH
Confidence 489999999999999999999999988887665432 121222344456677776 222 24 233222
Q ss_pred HHHHhhhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHH
Q 024055 166 MIGYGVGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLN 245 (273)
Q Consensus 166 ~~~~g~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~ 245 (273)
+...+. +++.++. ..| ..+...+....+.++|+.+++.+||++|+|+|+++|+||+|+++|++++++....
T Consensus 156 ~~~~~~-~~~~g~~-----~~g---~~~~~~~ll~~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t~~~i~~ 226 (297)
T PRK12871 156 RTDFTL-FPAAGYL-----CYG---QPDMTALLYMVFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMKGTMYWVTG 226 (297)
T ss_pred HHHHHH-HHHHHHH-----HhC---CCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechHHHHHHHHH
Confidence 233332 3343342 123 2233334444566778889999999999999999999999999999999876655
Q ss_pred HHHHhh
Q 024055 246 LFKNMD 251 (273)
Q Consensus 246 ~~~~~~ 251 (273)
+..+..
T Consensus 227 ~~~l~~ 232 (297)
T PRK12871 227 FTALHF 232 (297)
T ss_pred HHHHHH
Confidence 544433
No 43
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=99.96 E-value=1e-27 Score=215.01 Aligned_cols=212 Identities=23% Similarity=0.252 Sum_probs=149.6
Q ss_pred HHHHHHHhhccchhHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcCCCCccccCcC
Q 024055 24 NLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVKIDKINKPDLPLASGDF 103 (273)
Q Consensus 24 ~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~~~D~~n~~~Rpl~~G~i 103 (273)
-++.++++.|+.+..........+.... ...+.. ......++.++.+.++|.+|||+|+|+|+.|+|+||.++
T Consensus 3 ~~~~~~~~~~~~~~~~a~~~~~l~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~N~~~D~~~D~~n~~~R~~~s--- 75 (285)
T PRK12872 3 LLFAFLKLFRYGNLLIAALGQSLVYMAS--LLLGLP--ISWLLLLITFLIAAAVYIINYLTDLEEDIINKPERVVFS--- 75 (285)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHHH--HHHcCh--hHHHHHHHHHHHHHHHHHhhhhcCCchhhcCCCchHHHH---
Confidence 4689999999998877666555443211 011111 122556778888999999999999999999999999884
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH-----hchHHHHHHHHHHHHHHhHhcCCCCCc-ccccchhHHHHHHHHHHhhhHHHHH
Q 024055 104 SIKTGVAITLTCAMMSLAMGIM-----IGSPPLAWGLILWFILVTAYSIDLPFL-RWKRNAFLAAISIMIGYGVGIQFSF 177 (273)
Q Consensus 104 s~~~a~~~~~~~~~l~l~l~~~-----~~~~~~~~~~~~~~~~~~~Ys~~~pP~-~lK~~~~~~~~~v~~~~g~~~~l~~ 177 (273)
++++......+..++..++.. .+++.+.. .+++.++++.||. ||. ++||.|.++|++++..+|..+..+.
T Consensus 76 -~~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~Ys~--~~~~~lk~~p~~~~~~vg~~~g~~~~~~~ 151 (285)
T PRK12872 76 -ETKAYGLFLLLNVLGLYLGAYLLAVIGGPKFALI-FIIPLILGILYSV--FFKRRLKRIPLFKNLVVSLLWALSPLILG 151 (285)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH-HHHHHHHHHHHhC--hhHHHHhhhhhHhhHHHHHHHHHHHHHHH
Confidence 444444444444333333322 35544443 4566678999999 765 4899999999999999996555544
Q ss_pred HHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHHHhhhh
Q 024055 178 FIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDLE 253 (273)
Q Consensus 178 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~~~~~ 253 (273)
+.. .+. .++...+....+.+++...++.++|++|+|+|+++|+||+|+++|+|+++++...+..++++.
T Consensus 152 ~~~-----~~~--~~~~~~~~~~~~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~~~t~~~~~~~~~~~~~~ 220 (285)
T PRK12872 152 VYY-----YQL--TIFSLLLLYAVFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERTLKFLLILNLLFLIL 220 (285)
T ss_pred HHh-----ccc--ccchHHHHHHHHHHHHHHHHHHHHhcccchhHHHcCCcccchhcchHHHHHHHHHHHHHHHHH
Confidence 332 111 123333333445566677889999999999999999999999999999999999998887763
No 44
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=99.94 E-value=1.7e-26 Score=203.10 Aligned_cols=189 Identities=23% Similarity=0.370 Sum_probs=143.2
Q ss_pred HHHHHHHHHHHhhcccCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhh--cCCCCccccCcCCHHHHHHHHHHHH
Q 024055 39 GLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVKIDKI--NKPDLPLASGDFSIKTGVAITLTCA 116 (273)
Q Consensus 39 ~~~~~~~~g~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~~~D~~--n~~~Rpl~~G~is~~~a~~~~~~~~ 116 (273)
.+..+++.|.+++... +.++..+..+.+++++.+.++|.+||+.|+|+|+. |+|+||+++|+++++++...+..+.
T Consensus 3 ~~~~~~l~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~~~~~~~~~~~~~ 80 (257)
T PF01040_consen 3 LSFLPVLAGLALASGG--PFNWPIFLLGLLAVFLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRISPRQALIFALILL 80 (257)
T ss_pred HHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHhhChhhhhcCcccccccCcchhHHHHhHHHHHHHHHHHH
Confidence 3455666664444332 33444455667777789999999999999999999 8899999999999999999999999
Q ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhhhHHHHHHHHHHHHhhccccchhhHH
Q 024055 117 MMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSL 196 (273)
Q Consensus 117 ~l~l~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~~~~~~~~~~~g~~~~~~~~~ 196 (273)
++++.+++..++..+.+. +++.+.++.|| +|+|+||+++++++.++..++..+..+.+. .++ ..+...
T Consensus 81 ~l~l~l~~~~~~~~~~~~-~~~~~~~~~Ys---~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~~ 148 (257)
T PF01040_consen 81 LLGLLLALLLGPWFLLIL-LLGFLLGLLYS---PPLRLKRRPLWGELVVALVFGLLILLGAYA------AGG--DPPPPP 148 (257)
T ss_pred HHHHHHHHhcCchhHHHH-HHHHHHHHHHh---hhhhhcceeccchhhHHHhhhHhhhhhhhh------cCC--cccHHH
Confidence 999998888787665544 45556779999 677999999889999999888555444332 222 122223
Q ss_pred HHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHH
Q 024055 197 IFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIK 241 (273)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~ 241 (273)
+....+.+++.......+|++|+|+|+++|+||+|+++|++++++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~D~~~D~~~g~~Tl~v~~G~~~~~~ 193 (257)
T PF01040_consen 149 FLLAIFFFLLIFAIMFFNDIRDIEGDRKAGRRTLPVLLGEKKARY 193 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHcCCcchHHHHHHHHHHH
Confidence 333233345556677788999999999999999999999999998
No 45
>PRK13592 ubiA prenyltransferase; Provisional
Probab=99.94 E-value=4.2e-26 Score=201.88 Aligned_cols=181 Identities=12% Similarity=0.123 Sum_probs=133.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhchhhhhhcCCCCccccCcCCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhH
Q 024055 65 ETVVPAALMAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTA 144 (273)
Q Consensus 65 l~~l~~~~~~~~~~~~Nd~~D~~~D~~n~~~Rpl~~G~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~~~~~ 144 (273)
++.+..++...++|++|||+|+|+|++|+|+||+|||++|+++++.++..+.++++.++... ... ....++.+.
T Consensus 50 l~~~~vf~~~~~gniiNDy~D~EIDrIN~P~RPLPsG~VS~~~A~~~si~L~~~~l~L~~l~-----~i~-i~~~~i~~l 123 (299)
T PRK13592 50 VGVFTVFGFWMILRIADDFKDYETDRRLFPHRALPSGRVKKKDLAIALSFIVAVSVLLNVLF-----MNN-VGWFLFLYI 123 (299)
T ss_pred HHHHHHHHHHHHhHHHHHHhhHHHhhhcCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHH-----HHH-HHHHHHHHH
Confidence 45666777788999999999999999999999999999999999999998877777766443 111 122334566
Q ss_pred h-----cCCCCCcccccchhHHHHHHHHHHhhhHHH--HHHHH-HHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhcc
Q 024055 145 Y-----SIDLPFLRWKRNAFLAAISIMIGYGVGIQF--SFFIH-IQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDL 216 (273)
Q Consensus 145 Y-----s~~~pP~~lK~~~~~~~~~v~~~~g~~~~l--~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (273)
| +. ++|+.++.||+.++...|..+.. ..|.+ .+....|.+ ......++..+..++.+.++|+.+|+
T Consensus 124 Y~~lm~a~-----~~K~~~l~gNl~Va~ltg~~f~~g~~~~~~~fg~~~~g~~-~~~~~~~~l~l~afl~~l~rEI~Kdi 197 (299)
T PRK13592 124 YGTLMSFW-----FFKRDKIQNSLPLALVTHNPVMMILNLYTISFVCYKYNLP-LLSLPTVLLAFTMYFPSLIWEVCRKI 197 (299)
T ss_pred HHHHHHHH-----HHcccCCCcchhhhhhccchhhhchhhhhhhhhhhhcccc-hhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6 77 79999999999999998843322 22211 011112211 01110123233455567899999999
Q ss_pred CChHhhHHcCccccceecchHHHHHHHHHHHHHhhhhccCCCCCC
Q 024055 217 HDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDLEDESPLPGE 261 (273)
Q Consensus 217 ~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~~~~~~~~~~~~~ 261 (273)
+| |||++ |.+|+|+++|.|+|.+++.++..++.+ .||+|+.
T Consensus 198 eD-~gd~~-~~~Tlpi~~G~kkA~~ia~~l~ii~v~--~s~lp~~ 238 (299)
T PRK13592 198 RA-PKDET-EYVTYSKLFGYKKATRFIEVVTLLDIL--TNFALLW 238 (299)
T ss_pred cC-Ccccc-CCeeechhccchhHHHHHHHHHHHHHH--HhhHHHH
Confidence 99 88885 599999999999999999999999998 9998854
No 46
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=7.9e-27 Score=205.80 Aligned_cols=217 Identities=21% Similarity=0.234 Sum_probs=166.7
Q ss_pred hHHHHHHHHHhhccchhHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcCC--CCcc
Q 024055 21 FLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVKIDKINKP--DLPL 98 (273)
Q Consensus 21 ~~~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~~~D~~n~~--~Rpl 98 (273)
.+.++|+|++++||+.....+++.+.|+++|.++ +.++..++.+.++..+..+++|++|+++|+|+|++++| +||+
T Consensus 14 ~~~~~k~yl~LtKPrvi~L~~it~~~g~~lA~~~--~~~~~l~~~~~~g~~L~a~~a~a~N~~~DrDID~~M~RT~~RP~ 91 (304)
T COG0109 14 SRSTIKDYLQLTKPRVISLLLITAFAGMLLAPRG--SINPLLLLLTLLGGALGAGGAGAFNMYIDRDIDALMERTRKRPL 91 (304)
T ss_pred hHHHHHHHHHHhCCeeeehHHHHHHHHHHHcccc--cccHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhccCCCC
Confidence 5678999999999999999999999999999752 34565666788899999999999999999999999875 9999
Q ss_pred ccCcCCHHHHHHHHHHHHHHHHHHH-HHhchHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhhhHHHHH
Q 024055 99 ASGDFSIKTGVAITLTCAMMSLAMG-IMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSF 177 (273)
Q Consensus 99 ~~G~is~~~a~~~~~~~~~l~l~l~-~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~~ 177 (273)
++|+++++|++.++.++.++|+.+. +..|+....+.+...++-.+.||. .+||++. -|.++|...|+.+++.+
T Consensus 92 ~~G~i~p~~al~fgl~L~~~g~~~l~~~vn~laa~l~~~gi~~Yv~vYT~-----~lKR~T~-~NiviGg~aGa~PpliG 165 (304)
T COG0109 92 VTGLISPREALAFGLVLGVAGFSLLWFLVNLLAAVLGLFGIFFYVVVYTL-----WLKRRTP-QNIVIGGFAGAMPPLIG 165 (304)
T ss_pred CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-----hccCCcc-cceeeeeccccccccce
Confidence 9999999999999999999999887 666765555544344456889998 8999996 57899999998888888
Q ss_pred HHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHHHhhh
Q 024055 178 FIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDL 252 (273)
Q Consensus 178 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~~~~ 252 (273)
|.+ +.|. .+...+.....+++|+-..--.-.++-.|+.+++|+.++|++-|++.+++......++...
T Consensus 166 waA----vtg~---~~~~a~~Lf~IiF~WtPpHfwALAl~~~~DY~~AgiPMlPvv~G~~~t~~~I~~y~~~l~~ 233 (304)
T COG0109 166 WAA----VTGS---ISLGAILLFAIIFLWTPPHFWALALKYKDDYKAAGIPMLPVVKGERRTKRQILLYTLALAP 233 (304)
T ss_pred eee----eeCC---CCchHHHHHHHHHHhccHHHHHHHHHHHHHHHHcCCCcccccccHHHHHHHHHHHHHHHHH
Confidence 875 4442 2322232323444453211111123336677899999999999999999887776665444
No 47
>PRK13591 ubiA prenyltransferase; Provisional
Probab=99.94 E-value=8.6e-25 Score=195.12 Aligned_cols=170 Identities=21% Similarity=0.228 Sum_probs=125.3
Q ss_pred HHHHHHHHHHhhhhhhhchhhhhhcCCCCccccCcCCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcC
Q 024055 68 VPAALMAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSI 147 (273)
Q Consensus 68 l~~~~~~~~~~~~Nd~~D~~~D~~n~~~Rpl~~G~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~~~~~Ys~ 147 (273)
+.+.+...++|++|||+|+|+|++|+|+||.+ +++.+..++++..++|+.+++..|++. + .+++.+.+++||.
T Consensus 65 ~~~~L~~~s~~~iNd~~D~eiD~IN~P~r~~~----s~~~a~~ls~la~llGl~La~~~g~~l--l-~ll~~l~g~lYS~ 137 (307)
T PRK13591 65 IAGGLIIYSVYTLDRALDSEEDAVNRSELIGS----NKKIGLLVSLLAFLLGTYILAMDGMLL--L-AFLPFITGYLYSK 137 (307)
T ss_pred HHHHHHHHHHHHHhhhccchhhhccCcccccc----CHHHHHHHHHHHHHHHHHHHHHHhHHH--H-HHHHHHHHHHhcC
Confidence 34445566788899999999999999999986 788999999999999999988878532 2 2466678999997
Q ss_pred CC--CC--cccccchhHHHHHHHHHHhhhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhH
Q 024055 148 DL--PF--LRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDK 223 (273)
Q Consensus 148 ~~--pP--~~lK~~~~~~~~~v~~~~g~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~ 223 (273)
+. +| +++|+++.+||+.++.++|.....+ . +. ..+ ...+ ......+.....++++.+||++|+|+|+
T Consensus 138 Glk~~P~plklK~~~glGnl~V~i~~G~~i~g~--~--g~-~~~---~~~~-~~~i~l~~~~~l~~~~iindirDiEGDr 208 (307)
T PRK13591 138 GIKIGKFALKLKGGLGVKNIVVGITWGGFIAGI--A--GS-YCG---SLIP-VGLIFLFFGVKLFINSCVYDFKDVKGDT 208 (307)
T ss_pred CCCCCCccccccCCCchhHHHHHHHHHHHHHHH--H--Hh-hhh---hHHH-HHHHHHHHHHHHHHHHHHHHhhhhHhHH
Confidence 21 14 4789998899999999999533211 0 11 011 1111 1111112222235677899999999999
Q ss_pred HcCccccceecchHHHHHHHHHHHHHhhhh
Q 024055 224 EYGIRTFSVMLGKERMIKELLNLFKNMDLE 253 (273)
Q Consensus 224 ~~G~~Tl~v~lG~~~a~~~~~~~~~~~~~~ 253 (273)
+.|++|+|+++|+++++++...+++.+++.
T Consensus 209 ~~G~kTLPV~lG~~~A~~l~~~l~~~~~l~ 238 (307)
T PRK13591 209 LAGIKTLPVSLGEQKTRNLLLGIHLFSHLV 238 (307)
T ss_pred HcCCeeEEEEECHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988877763
No 48
>PLN02776 prenyltransferase
Probab=99.93 E-value=3.6e-24 Score=194.28 Aligned_cols=202 Identities=15% Similarity=0.073 Sum_probs=150.1
Q ss_pred hhccchhHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcC--CCCccccCcCCHHHH
Q 024055 31 FTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVKIDKINK--PDLPLASGDFSIKTG 108 (273)
Q Consensus 31 l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~~~D~~n~--~~Rpl~~G~is~~~a 108 (273)
++||+.....+++.+.|+++|.++.+ ++..++.+.++.+++.+++|++||++|+|+|++|+ ++||+++|++|+++|
T Consensus 1 L~Kpri~~lv~~ta~~G~~lA~~~~~--~~~~l~~~~lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~~~A 78 (341)
T PLN02776 1 LSKARLSALVVATSGAGFVLGSGEAI--DLPGLGWTCAGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISVPHA 78 (341)
T ss_pred CCcchhHHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCHHHH
Confidence 47899999999999999999865433 33334466788899999999999999999999876 599999999999999
Q ss_pred HHHHHHHHHHHHHH-HHHhchHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 024055 109 VAITLTCAMMSLAM-GIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLG 187 (273)
Q Consensus 109 ~~~~~~~~~l~l~l-~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~~~~~~~~~~~g 187 (273)
+.+++.+.++|+.+ ++.+|+.+..++....++....||. +||++.+ +..+|...|+++++.+|.+ +.|
T Consensus 79 ~~~~~~l~~~g~~~l~~~~n~l~~~l~~~~~~ly~~vYt~------lKR~t~~-~~~lG~~~Ga~ppL~Gw~A----vtg 147 (341)
T PLN02776 79 VAWAVVVGAAGVALLAYKTNMLTAGLGAGNILLYAFVYTP------LKQIHPA-NTWVGAVVGAIPPLMGWAA----ASG 147 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh------HccCCch-hHHHHHHHHHHHHHHHHHH----HcC
Confidence 99999999988854 4567876665543222233567886 9999976 5799999998788888876 333
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceec--chHHHHHHHHHHHH
Q 024055 188 RSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVML--GKERMIKELLNLFK 248 (273)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~l--G~~~a~~~~~~~~~ 248 (273)
..++..++....+++|+........+.|+|+|+++|++++|+.- |++.++.+....+.
T Consensus 148 ---~~~~~~~~Lf~~~~~Wq~pHf~~la~~~~dDy~~ag~pmlpv~~~~g~~ta~~i~~~~~~ 207 (341)
T PLN02776 148 ---QLDAGAMVLAAALYFWQMPHFMALAYMCRDDYAAGGYRMLSLADATGRRTALVALRNCLY 207 (341)
T ss_pred ---CCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCCcccCccccchHHHHHHHHHHHHH
Confidence 23333344444556676644555567788899999999999976 45666665544443
No 49
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=99.89 E-value=1.3e-21 Score=175.45 Aligned_cols=144 Identities=19% Similarity=0.260 Sum_probs=111.1
Q ss_pred hHHHHHHHHHhhccchhHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhc--CCCCcc
Q 024055 21 FLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVKIDKIN--KPDLPL 98 (273)
Q Consensus 21 ~~~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~~~D~~n--~~~Rpl 98 (273)
..+++|+|++++||++|.++.+.+. +..++........+...++++++..++++++|++||++|+|+|++| ||+||+
T Consensus 7 ~~~~l~~~l~L~RP~~w~~nll~~~-~~~~a~~~~~~~~~~~~llafl~~~l~~sa~y~iND~~D~e~Dr~~prk~~RPl 85 (295)
T PRK12324 7 PKNLLAGYLKLLRPKQWIKNLFVFA-APIFAGNLLNPGALLKVLLAFVLFCLASSAVYLVNDIRDVEADRLHPTKRNRPI 85 (295)
T ss_pred hHHHHHHHHHHhCchHHHHHHHHHH-HHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCCCCCCCC
Confidence 4567899999999999999988554 3344432111112222334455556677888899999999999997 689999
Q ss_pred ccCcCCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhh
Q 024055 99 ASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGV 171 (273)
Q Consensus 99 ~~G~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~ 171 (273)
++|++++++++.++.++..+|+.+++.+++..... .+..++..+.||. ++||++.+++++++..++.
T Consensus 86 asG~is~~~A~~~~~~l~~~~l~la~~l~~~~~~~-~~~~~~~~~~Ys~-----~lK~~~~~d~l~va~~~~l 152 (295)
T PRK12324 86 ASGVVSVSLAYILAVVLLVASLALAYLLSPKLALV-LLVYLVLNLAYSF-----KLKHQPVLDVFCIASGFVL 152 (295)
T ss_pred CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhH-----HhcCCchhhHHHHHHHHHH
Confidence 99999999999999999999999888888765544 3456677889998 8999999999888887763
No 50
>PRK08238 hypothetical protein; Validated
Probab=99.87 E-value=3.5e-21 Score=183.30 Aligned_cols=191 Identities=21% Similarity=0.283 Sum_probs=139.4
Q ss_pred hhhhHHHHHHHHHhhccchhHHHHHHHHHHHHhhcccCCCCc-HHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhc--CC
Q 024055 18 QAGFLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLT-PTFFMETVVPAALMAIYMTAINQLVDVKIDKIN--KP 94 (273)
Q Consensus 18 ~~~~~~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~-~~~~~l~~l~~~~~~~~~~~~Nd~~D~~~D~~n--~~ 94 (273)
.++.+.++++|++++||++|.++.+.++ +++.+. .+.+.. +...++++++..++.+++|++||++|+|.|+.| |+
T Consensus 184 ~~~~~~~~~~~~~l~Rp~q~~kn~l~~~-p~l~a~-~~~~~~~~~~~~~~f~~~~l~~sa~~~~ND~~D~e~Dr~~~rk~ 261 (479)
T PRK08238 184 FPPRPARLRTWLKALRVHQWAKNLLVFV-PLLAAH-QFGDLQALLAALLAFLAFSLCASAVYILNDLLDLEADRAHPRKR 261 (479)
T ss_pred cCCCchHHHHHHHHhCCcHHHHHHHHHH-HHHHhc-ccCChHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccCCCCC
Confidence 3445678999999999999999998754 776663 222322 222335566667888899999999999999998 67
Q ss_pred CCccccCcCCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhhhHH
Q 024055 95 DLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQ 174 (273)
Q Consensus 95 ~Rpl~~G~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~ 174 (273)
+||+++|++|+++|+.++.++.++|+.+++.+++..+ ...+..++..++||. ++||+++++++++++.++.-+.
T Consensus 262 ~RPlasG~is~~~A~~~~~~l~~~~~~l~~~l~~~~~-~~~~~~~~~~~~Ys~-----~lKr~~~~~~~~la~~~~lr~~ 335 (479)
T PRK08238 262 RRPFASGALPIPFGLAAAPLLLLAGLALALALGPAFL-LVLLAYLALTLAYSL-----RLKRKVLVDVLTLAALYTLRII 335 (479)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHhhH-----HhcCCccccchHHHHHHHHHHH
Confidence 9999999999999999999999999999888887443 334566677889998 8999999999999888764333
Q ss_pred HHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCc
Q 024055 175 FSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGI 227 (273)
Q Consensus 175 l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~ 227 (273)
.| +. ..+ .+...|+.. +..++.....+.+...|.+++++.|.
T Consensus 336 ~G-~~-----a~~----~~~s~wll~-~~~~~~l~la~~KR~~El~~~~~~~~ 377 (479)
T PRK08238 336 AG-AA-----AIG----VALSFWLLA-FSMFFFLSLALVKRYTELRRALQRGK 377 (479)
T ss_pred HH-HH-----Hhc----cCHHHHHHH-HHHHHHHHHHHHHhHHHHHHHHhcCC
Confidence 33 22 122 122223321 22223345677888888888887775
No 51
>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]
Probab=99.84 E-value=3.6e-21 Score=165.67 Aligned_cols=218 Identities=17% Similarity=0.129 Sum_probs=158.6
Q ss_pred hhhhhhhhhHHHHHHHHHhhccchhHHHH---HHHHHHHHhhcccCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhchhhh
Q 024055 13 KLKSFQAGFLKNLKSLYRFTRPNTLNGLV---IAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVKID 89 (273)
Q Consensus 13 ~~~~~~~~~~~~l~~~~~l~Rp~~~~~~~---~~~~~g~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~~~D 89 (273)
+.++.....+.+++.|.|++|....+++. .|.....++|...-...+...+.+.-.+.+++.+++|.+||..|+|.|
T Consensus 52 ssss~~~~~p~r~~pYaqLmRldkPiGTwLLywPCtWSIamaAdag~~p~~~mL~LFG~GAllMRgAGCtINDlwDkdlD 131 (353)
T KOG1381|consen 52 SSSSLVASSPKRWKPYAQLMRLDKPIGTWLLYWPCTWSIAMAADAGLLPSIKMLALFGVGALLMRGAGCTINDLWDKDLD 131 (353)
T ss_pred CchhhhhcCCccchhHHHHHhcCCCceeeeeecchHHHHHhccCCCccchhHHHHHhcccHHHhccCCceehhhhhhhhh
Confidence 33556666778899999999998877664 455556666653211112222334456789999999999999999999
Q ss_pred hhcC--CCCccccCcCCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHH
Q 024055 90 KINK--PDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMI 167 (273)
Q Consensus 90 ~~n~--~~Rpl~~G~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~ 167 (273)
+..+ +.||+++|++|++||..+......+|+.+...+|++...+ +..++...+.|+. +||.+++.+++.|.
T Consensus 132 ~KVeRtklRPlAsG~ls~~qaI~fL~~ql~~gLgiLlqLn~ysi~l-g~~sl~~v~~ypl------~kr~TY~pq~vLgl 204 (353)
T KOG1381|consen 132 AKVERTKLRPLASGSLSPRQAIGFLGAQLSLGLGILLQLNWYSIAL-GASSLALVITYPL------MKRFTYWPQLVLGL 204 (353)
T ss_pred hhHhhhcccccccCCcchhHHHHHHHHHHHHhHHHHHhccHHHHHh-cccccccEEEeeh------hhhcchhHHHHHhh
Confidence 9754 4899999999999999998888889988888889876654 3466667788887 99999999999888
Q ss_pred HHhhhHHHHHHHHHHHHhhccccchhhHHHHH-HHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHH
Q 024055 168 GYGVGIQFSFFIHIQKYVLGRSVVITRSLIFT-TGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLN 245 (273)
Q Consensus 168 ~~g~~~~l~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~ 245 (273)
++..-..+| |.+ +-| +..+...+. .+--..|+...+.+++.+|.++|.++|+|+.+.++|++.-.++...
T Consensus 205 tfnwGAllG-w~A----~~g---~~~~s~~~plYls~v~Wtl~YDTIYAHQDK~dDvk~gvkSTALrfG~nTK~wl~gf 275 (353)
T KOG1381|consen 205 TFNWGALLG-WCA----LKG---SLSPSAVLPLYLSGVCWTLIYDTIYAHQDKRDDVKIGVKSTALRFGDNTKPWLSGF 275 (353)
T ss_pred hcchhhhhc-chh----hcC---ccChhhhhHHHHhhhhhhhhhhhhhhcccchhhhHhcchhhhhhcCCCCchHHhhh
Confidence 766433344 322 222 122222221 1112235667799999999999999999999999999987777643
No 52
>KOG4581 consensus Predicted membrane protein [Function unknown]
Probab=99.59 E-value=1.5e-16 Score=134.35 Aligned_cols=220 Identities=18% Similarity=0.127 Sum_probs=156.0
Q ss_pred HHHHHHHHHhhccchhHHHHHHHHHHHHhhccc--CCCCcHHHHHHHHHHHHHHHHHHhhhhhhhch--hhhhhcCCCCc
Q 024055 22 LKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQN--LGDLTPTFFMETVVPAALMAIYMTAINQLVDV--KIDKINKPDLP 97 (273)
Q Consensus 22 ~~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~--~~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~--~~D~~n~~~Rp 97 (273)
..+.+.|+-..||+....++.|...|.++|..+ ..++....+.++.++.+..+.+.|.+|.|+|. .+|.....+|.
T Consensus 58 ~~k~~syllalrpws~sasl~p~~lgsalayrs~~~~d~~l~~~fl~a~avlavh~agnlvntyfdf~kgid~kkaddrt 137 (359)
T KOG4581|consen 58 FMKCASYLLALRPWSFSASLTPTALGSALAYRSHGAEDFRLATFFLCAFAVLAVHCAGNLVNTYFDFIKGIDHKKADDRT 137 (359)
T ss_pred HHHHHHHHhhhcccccccccchHhhhhHHHHhhccccchhHHHHHHHHhhheeeecccchhhhhhhhhhccccccccchh
Confidence 467889999999999999999999999998653 23444444445667777889999999999998 47877667999
Q ss_pred cccCcCCHHHHHHHHHHHHHHHHHHH---HHhchHH---HHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhh
Q 024055 98 LASGDFSIKTGVAITLTCAMMSLAMG---IMIGSPP---LAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGV 171 (273)
Q Consensus 98 l~~G~is~~~a~~~~~~~~~l~l~l~---~~~~~~~---~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~ 171 (273)
++...+++.+...++..+..+|..-+ +.+++.. +.+....++-..++|+.+. .+|+.. +|.+++-+.+|+
T Consensus 138 lvd~il~~~dvv~~g~~ly~~gc~~~~~l~~lsp~klehlaliyfggls~sflytggi---gfkyia-lgdliili~fgp 213 (359)
T KOG4581|consen 138 LVDHILEKDDVVRFGAFLYMAGCGCAACLAVLSPAKLEHLALIYFGGLSGSFLYTGGI---GFKYIA-LGDLIILILFGP 213 (359)
T ss_pred HHHHhcChhheehhhHHHHHhcchHHHHHHhCCHhhhhhhhhhhccCcccceeEeccc---ceEEEe-ccCEEEEEeech
Confidence 99999999999999888887665432 3344421 2222334445578899733 689888 588887777886
Q ss_pred hHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHHHhh
Q 024055 172 GIQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMD 251 (273)
Q Consensus 172 ~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~~~ 251 (273)
+..+-.|.. |+ |. ..+.+ ..+. +...+-+-++.+.||.||.|+||++|+-|+++.+|+..+-.++.-++.+-|
T Consensus 214 iavlfaf~~-q~---g~-l~~~~-l~ya-iplalnteailhsnntrd~dndr~agivtlailig~t~s~ily~~llf~py 286 (359)
T KOG4581|consen 214 IAVLFAFAI-QT---GH-LAIFP-LGYA-IPLALNTEAILHSNNTRDADNDREAGIVTLAILIGPTASHILYAMLLFAPY 286 (359)
T ss_pred HHHHHHHHH-hc---Cc-eeEEe-ehhe-eeeccchHHHhccCCCcccccccccCeEEEEEeecccHHHHHHHHHHHHHH
Confidence 544433332 32 21 11111 1121 233334567889999999999999999999999999998887776655554
Q ss_pred h
Q 024055 252 L 252 (273)
Q Consensus 252 ~ 252 (273)
+
T Consensus 287 ~ 287 (359)
T KOG4581|consen 287 L 287 (359)
T ss_pred H
Confidence 4
No 53
>KOG1380 consensus Heme A farnesyltransferase [Coenzyme transport and metabolism]
Probab=99.55 E-value=3.8e-15 Score=131.49 Aligned_cols=212 Identities=16% Similarity=0.134 Sum_probs=150.0
Q ss_pred HHHHHHHHHhhccchhHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcCC--CCccc
Q 024055 22 LKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVKIDKINKP--DLPLA 99 (273)
Q Consensus 22 ~~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~~~D~~n~~--~Rpl~ 99 (273)
.+.++.|+|++||+.....+++...|+++|...+ +++ -++.+.++..+++..+|++||+++...|.++++ +||++
T Consensus 91 ~k~~~~y~eLsK~rLT~LVV~tt~~gYalap~p~-s~~--~l~~~tvGT~L~S~sANaiNQ~~E~~~DsqM~RT~~Rplv 167 (409)
T KOG1380|consen 91 GKYARCYLELSKPRLTMLVVLTTMTGYALAPGPF-SFP--TLLYTTVGTGLCSASANAINQIFEPPFDSQMKRTQNRPLV 167 (409)
T ss_pred cchHHHHHHhcccceEEEEeeeccccccccccCC-Ccc--hhHHHhhhhHHHHhhhHhhhhhccCCchhhhHhhcccccc
Confidence 4678899999999988888888888999997642 333 344677888999999999999999999998765 89999
Q ss_pred cCcCCHHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhhhHHHHHH
Q 024055 100 SGDFSIKTGVAITLTCAMMSLAMGIM-IGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFF 178 (273)
Q Consensus 100 ~G~is~~~a~~~~~~~~~l~l~l~~~-~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~~~ 178 (273)
+|++++.+|+.++.+..+.|..+.++ .|+.... ++..-.++|...|.| +||... .|-.+|.+.|+++++-+|
T Consensus 168 ~g~isp~hA~~fAt~~g~~G~slL~~gvNpl~a~----Lga~Ni~LY~~vYTP--lKrihi-inTWvGavVGAIPPLMGw 240 (409)
T KOG1380|consen 168 RGRISPLHAVTFATLTGTAGVSLLAFGVNPLAAA----LGAGNIFLYAGVYTP--LKRIHI-INTWVGAVVGAIPPLMGW 240 (409)
T ss_pred cCccChHHHHHHHHHhccccceeeeecccHHHHH----Hhhcchheeeccccc--hhhhhh-hhhHHHHHhccCCccchh
Confidence 99999999999999888888776544 6664433 233334455554444 899885 677899999988888888
Q ss_pred HHHHHHhhccccchhhHHHHHHHHHHHHH--HHHHHHhccCChHhhHHcCcccccee---cchHHHHHHHHHHHHHhhh
Q 024055 179 IHIQKYVLGRSVVITRSLIFTTGVITCMS--LAKALLKDLHDVDGDKEYGIRTFSVM---LGKERMIKELLNLFKNMDL 252 (273)
Q Consensus 179 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~D~e~D~~~G~~Tl~v~---lG~~~a~~~~~~~~~~~~~ 252 (273)
.+ ..| ..++..+......+.|. .-..+..++|| +..++|.+.+++. +-++.+.+.+..++.+.+.
T Consensus 241 AA----asg---~l~~ga~iLa~~LyaWQfPHFnaLS~~lR~--DYs~~GY~Mma~~np~l~rr~alr~s~a~~~L~~~ 310 (409)
T KOG1380|consen 241 AA----ASG---LLDPGAMILAGILYAWQFPHFNALSWNLRN--DYSKAGYRMMAVTNPGLCRRVALRYSLAFLPLSYA 310 (409)
T ss_pred hh----hcc---CCCccHHHHHHHHHHhcccchhhhhhhhch--hhhhccEEEEEeeccchhhHHHHHHHHHHhhhhcc
Confidence 75 223 12333333322333332 23344444543 4578999999986 4456677777777766654
No 54
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=93.56 E-value=1.1 Score=40.46 Aligned_cols=31 Identities=19% Similarity=0.209 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhhhhhhhchhhhhhcCCCCcc
Q 024055 68 VPAALMAIYMTAINQLVDVKIDKINKPDLPL 98 (273)
Q Consensus 68 l~~~~~~~~~~~~Nd~~D~~~D~~n~~~Rpl 98 (273)
+.+......++..|+..|.|+|+.|+++.+.
T Consensus 183 lp~gil~~~Il~aNNirDie~D~~~gk~TLa 213 (303)
T COG1575 183 LPVGILIANILLANNLRDIEEDIRNGKYTLA 213 (303)
T ss_pred HHHHHHHHHHHHhcccccchhHHhcCCccee
Confidence 3444455566789999999999999875544
No 55
>PRK13591 ubiA prenyltransferase; Provisional
Probab=93.12 E-value=1 Score=40.88 Aligned_cols=67 Identities=19% Similarity=0.305 Sum_probs=36.1
Q ss_pred hhhhhhchhhhhhcCCCCccccCcCCHHHHHHHHHHHHHHH---HHHHHHhc-----hHHHHHHHHHHHHHHhHhcC
Q 024055 79 AINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMS---LAMGIMIG-----SPPLAWGLILWFILVTAYSI 147 (273)
Q Consensus 79 ~~Nd~~D~~~D~~n~~~Rpl~~G~is~~~a~~~~~~~~~l~---l~l~~~~~-----~~~~~~~~~~~~~~~~~Ys~ 147 (273)
.+||+.|.|.|+.++. |.+|- .+.++.+..+...+.+++ .+.+..+| +...+.++..++...+.|+.
T Consensus 197 iindirDiEGDr~~G~-kTLPV-~lG~~~A~~l~~~l~~~~~l~li~~~~~g~l~~~~~~~~~s~~~~l~~~~~~~~ 271 (307)
T PRK13591 197 CVYDFKDVKGDTLAGI-KTLPV-SLGEQKTRNLLLGIHLFSHLVLGIALIFGVIAFEPIILLYSFVCGLICIQVYSS 271 (307)
T ss_pred HHHHhhhhHhHHHcCC-eeEEE-EECHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHcC
Confidence 5899999999999764 22322 233344444433333222 12222222 22233345567777889998
No 56
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=92.77 E-value=1.5 Score=39.38 Aligned_cols=53 Identities=11% Similarity=0.120 Sum_probs=35.8
Q ss_pred HHHHHhhhhhhhchhhhhhcCCCCccccCcCCHHHHHHHHHHHHHHHHHHHHHhc
Q 024055 73 MAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIG 127 (273)
Q Consensus 73 ~~~~~~~~Nd~~D~~~D~~n~~~Rpl~~G~is~~~a~~~~~~~~~l~l~l~~~~~ 127 (273)
...+...+||+.|.|.|+.++. |.++. ++.++.+..++..+.+++.+....++
T Consensus 172 ~~~a~~ii~~irDie~Dr~~G~-~Tlpv-~lG~~~a~~~~~~l~~~a~~~~~~~~ 224 (282)
T PRK13105 172 WGMASHAFGAVQDVVADREAGI-ASIAT-VLGARRTVRLAVGLYAAAAVLMLALP 224 (282)
T ss_pred HHHHHHHHHhCcchHhHHHcCC-ccchH-HhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556668999999999998753 33333 45667787777777766665444333
No 57
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=91.92 E-value=2 Score=38.24 Aligned_cols=42 Identities=17% Similarity=0.255 Sum_probs=25.0
Q ss_pred HHHHHHhhhhhhhchhhhhhcC-CCCccccCcCCHHHHHHHHHHHH
Q 024055 72 LMAIYMTAINQLVDVKIDKINK-PDLPLASGDFSIKTGVAITLTCA 116 (273)
Q Consensus 72 ~~~~~~~~~Nd~~D~~~D~~n~-~~Rpl~~G~is~~~a~~~~~~~~ 116 (273)
+.....+.+||.-|+|.|+.++ +.=|..-| ++.+......+.
T Consensus 172 l~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG---~~~t~~~~~~~~ 214 (285)
T PRK12872 172 LKSFIREIVFDIKDIEGDRKSGLKTLPIVLG---KERTLKFLLILN 214 (285)
T ss_pred HHHHHHHHHHhcccchhHHHcCCcccchhcc---hHHHHHHHHHHH
Confidence 3344445789999999999865 33343334 344544444433
No 58
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=91.43 E-value=5.2 Score=35.93 Aligned_cols=51 Identities=18% Similarity=0.163 Sum_probs=31.5
Q ss_pred HHHHHHHhhhhhhhchhhhhhcCCCCccccCcCCHHHHHHHHHHHHHHHHHHH
Q 024055 71 ALMAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMG 123 (273)
Q Consensus 71 ~~~~~~~~~~Nd~~D~~~D~~n~~~Rpl~~G~is~~~a~~~~~~~~~l~l~l~ 123 (273)
.+.+.....+||+.|+|.|+..+. |.++. ++.++.+..+...+..++..+-
T Consensus 175 ~l~~~~~~~in~i~Die~D~~aGi-~Tlav-~lG~~~a~~~~~~~~~~a~~~~ 225 (282)
T PRK12875 175 WLWAMGMHTFSAIPDIEPDRAAGI-RTTAT-VLGERRTYAYCAACWLLAAAAF 225 (282)
T ss_pred HHHHHHHHHHHhccCHHHHHHcCC-ccchh-hccHhhHHHHHHHHHHHHHHHH
Confidence 344555567899999999998652 33322 4445666666666555554443
No 59
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=91.11 E-value=4.2 Score=36.35 Aligned_cols=35 Identities=20% Similarity=0.148 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhhhhhhhchhhhhhcC-CCCccccCc
Q 024055 68 VPAALMAIYMTAINQLVDVKIDKINK-PDLPLASGD 102 (273)
Q Consensus 68 l~~~~~~~~~~~~Nd~~D~~~D~~n~-~~Rpl~~G~ 102 (273)
+..++.+..-..+|++.|+|.|+..+ |.-|..-|+
T Consensus 167 ~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~ 202 (281)
T TIGR01474 167 LANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGD 202 (281)
T ss_pred HHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhh
Confidence 44445555566789999999999754 555655564
No 60
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=90.85 E-value=2.2 Score=38.16 Aligned_cols=34 Identities=18% Similarity=0.268 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhhhhhhhchhhhhhcC-CCCccccC
Q 024055 68 VPAALMAIYMTAINQLVDVKIDKINK-PDLPLASG 101 (273)
Q Consensus 68 l~~~~~~~~~~~~Nd~~D~~~D~~n~-~~Rpl~~G 101 (273)
+..++.+..-..+||..|+|.|+..+ |.-|..-|
T Consensus 165 ~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G 199 (282)
T TIGR01475 165 IGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFG 199 (282)
T ss_pred HHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhc
Confidence 33344445555699999999998754 45555555
No 61
>PLN00012 chlorophyll synthetase; Provisional
Probab=90.59 E-value=4.2 Score=38.07 Aligned_cols=31 Identities=19% Similarity=0.341 Sum_probs=21.4
Q ss_pred HHHHHHhhhhhhhchhhhhhcC-CCCccccCc
Q 024055 72 LMAIYMTAINQLVDVKIDKINK-PDLPLASGD 102 (273)
Q Consensus 72 ~~~~~~~~~Nd~~D~~~D~~n~-~~Rpl~~G~ 102 (273)
+...+....||+.|+|.|+..+ +.-|..-|.
T Consensus 263 l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~ 294 (375)
T PLN00012 263 IAGLGIAIVNDFKSIEGDRALGLQSLPVAFGV 294 (375)
T ss_pred HHHHHHHHHhhhcchhhHHHcCCcccceeech
Confidence 3444556799999999999764 445554454
No 62
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=90.24 E-value=2.4 Score=38.58 Aligned_cols=41 Identities=10% Similarity=0.018 Sum_probs=25.2
Q ss_pred HHHHhhhhhhhchhhhhhcCCCCccccCcCCHHHHHHHHHHHH
Q 024055 74 AIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCA 116 (273)
Q Consensus 74 ~~~~~~~Nd~~D~~~D~~n~~~Rpl~~G~is~~~a~~~~~~~~ 116 (273)
.......||+-|+|+|+.++++ .++. ++.++.+......+.
T Consensus 187 ~~~IL~~Nn~rD~e~D~~~Gk~-TL~v-~lG~~~a~~ly~~l~ 227 (304)
T PRK07419 187 TSLILFCSHFHQVEDDLAAGKR-SPIV-RLGTKRGAQLLPWIV 227 (304)
T ss_pred HHHHHHHcCCcchhhHHHcCCc-ceee-eechHhHHHHHHHHH
Confidence 3455569999999999998753 3322 344455544444333
No 63
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=89.29 E-value=6.7 Score=35.08 Aligned_cols=34 Identities=18% Similarity=0.056 Sum_probs=22.1
Q ss_pred HHHHHHHHHhhhhhhhchhhhhhcC-CCCccccCc
Q 024055 69 PAALMAIYMTAINQLVDVKIDKINK-PDLPLASGD 102 (273)
Q Consensus 69 ~~~~~~~~~~~~Nd~~D~~~D~~n~-~~Rpl~~G~ 102 (273)
..++.+..-...|++.|+|.|+.++ |.-|..-|.
T Consensus 173 ~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~ 207 (285)
T PRK12847 173 GCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGN 207 (285)
T ss_pred HHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhcc
Confidence 3344444445689999999999865 444554454
No 64
>PLN02922 prenyltransferase
Probab=88.89 E-value=3.1 Score=37.96 Aligned_cols=41 Identities=10% Similarity=0.124 Sum_probs=25.4
Q ss_pred HHHHhhhhhhhchhhhhhcCCCCccccCcCCHHHHHHHHHHHH
Q 024055 74 AIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCA 116 (273)
Q Consensus 74 ~~~~~~~Nd~~D~~~D~~n~~~Rpl~~G~is~~~a~~~~~~~~ 116 (273)
.......||+-|+|+|+.++++...+ ++.++.+..+...+.
T Consensus 201 ~~~iL~~Nn~rD~e~D~~~Gk~TL~v--~lG~~~a~~l~~~l~ 241 (315)
T PLN02922 201 TTLILFCSHFHQIDGDRAVGKMSPLV--RLGTEKGSRVVRWAV 241 (315)
T ss_pred HHHHHHHccCcchhhHHHcCccceee--EEChHHHHHHHHHHH
Confidence 34556799999999999987543222 344455554444333
No 65
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=88.86 E-value=6.3 Score=35.87 Aligned_cols=29 Identities=24% Similarity=0.324 Sum_probs=19.7
Q ss_pred HHHHhhhhhhhchhhhhhcC-CCCccccCc
Q 024055 74 AIYMTAINQLVDVKIDKINK-PDLPLASGD 102 (273)
Q Consensus 74 ~~~~~~~Nd~~D~~~D~~n~-~~Rpl~~G~ 102 (273)
.......||+.|+|.|+..+ +.-|..-|+
T Consensus 202 ~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~ 231 (314)
T PRK07566 202 AHGIMTLNDFKSVEGDRQLGLRSLPVVFGE 231 (314)
T ss_pred HHHHHHHHHHHHhHhHHHcCCcccceeEcH
Confidence 34446799999999999864 344444443
No 66
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=88.39 E-value=4.3 Score=36.78 Aligned_cols=33 Identities=18% Similarity=0.214 Sum_probs=22.2
Q ss_pred HHHHHHHHHhhhhhhhchhhhhhcC-CCCccccC
Q 024055 69 PAALMAIYMTAINQLVDVKIDKINK-PDLPLASG 101 (273)
Q Consensus 69 ~~~~~~~~~~~~Nd~~D~~~D~~n~-~~Rpl~~G 101 (273)
+.++.+.+-..+|+..|+|.|+..+ +.-|+.-|
T Consensus 185 ~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G 218 (300)
T PRK13106 185 GTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG 218 (300)
T ss_pred HHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh
Confidence 4444455556799999999998754 44555445
No 67
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=87.55 E-value=3 Score=38.15 Aligned_cols=45 Identities=18% Similarity=0.108 Sum_probs=27.7
Q ss_pred HHHHHHhhhhhhhchhhhhhcCCCCccccCcCCHHHHHHHHHHHHHH
Q 024055 72 LMAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMM 118 (273)
Q Consensus 72 ~~~~~~~~~Nd~~D~~~D~~n~~~Rpl~~G~is~~~a~~~~~~~~~l 118 (273)
+........||+-|+|+|+.++++ .++. ++.++.+......+..+
T Consensus 200 ~l~~~ill~Nn~~D~e~D~~~gk~-TL~v-~lG~~~a~~l~~~l~~~ 244 (317)
T PRK13387 200 FTIANIMLANNLRDLDEDIKNHRY-TLVY-YIGREKGVVLFAILFYA 244 (317)
T ss_pred HHHHHHHHhcCCccchhHHHcCCe-eeee-eEcHHhHHHHHHHHHHH
Confidence 334444579999999999998643 3322 44456665554444443
No 68
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=87.37 E-value=8.8 Score=34.07 Aligned_cols=33 Identities=24% Similarity=0.374 Sum_probs=21.3
Q ss_pred HHHHHHHHhhhhhhhchhhhhhcC-CCCccccCc
Q 024055 70 AALMAIYMTAINQLVDVKIDKINK-PDLPLASGD 102 (273)
Q Consensus 70 ~~~~~~~~~~~Nd~~D~~~D~~n~-~~Rpl~~G~ 102 (273)
.++.+...+..||+.|+|.|+.++ +.=|..-|+
T Consensus 164 ~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~ 197 (279)
T PRK12884 164 AFLMTLGREIMKDIEDVEGDRLRGARTLAILYGE 197 (279)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHcCCeeechHhcH
Confidence 334444556799999999999865 333443343
No 69
>PRK13592 ubiA prenyltransferase; Provisional
Probab=87.11 E-value=2.4 Score=38.32 Aligned_cols=48 Identities=15% Similarity=0.066 Sum_probs=32.9
Q ss_pred HHHHHHHHHhccCChHhhHHc--CccccceecchHHHHHHHHHHHHHhhh
Q 024055 205 CMSLAKALLKDLHDVDGDKEY--GIRTFSVMLGKERMIKELLNLFKNMDL 252 (273)
Q Consensus 205 ~~~~~~~~~~~~~D~e~D~~~--G~~Tl~v~lG~~~a~~~~~~~~~~~~~ 252 (273)
+.+.+-.++||+.|+|-|+.+ .|.=-.-+..+|.++..+..+.+++..
T Consensus 57 ~~~~~gniiNDy~D~EIDrIN~P~RPLPsG~VS~~~A~~~si~L~~~~l~ 106 (299)
T PRK13592 57 GFWMILRIADDFKDYETDRRLFPHRALPSGRVKKKDLAIALSFIVAVSVL 106 (299)
T ss_pred HHHHHhHHHHHHhhHHHhhhcCCCCCCCcCCCCHHHHHHHHHHHHHHHHH
Confidence 334567889999999999754 222223366778888888777665554
No 70
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=87.01 E-value=5.1 Score=36.04 Aligned_cols=44 Identities=9% Similarity=0.014 Sum_probs=27.6
Q ss_pred HHHHHhhhhhhhchhhhhhcCCCCccccCcCCHHHHHHHHHHHHHH
Q 024055 73 MAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMM 118 (273)
Q Consensus 73 ~~~~~~~~Nd~~D~~~D~~n~~~Rpl~~G~is~~~a~~~~~~~~~l 118 (273)
........||+-|+|+|+.++++ .++. ++.++.+..+...+..+
T Consensus 173 ~~~~iL~~Nn~rD~e~D~~~Gk~-TL~v-~lG~~~a~~l~~~l~~~ 216 (285)
T TIGR02235 173 ATTLILFCSHFHQVEDDLAHGKR-SPVV-RLGTKLAAKIVPWVISL 216 (285)
T ss_pred HHHHHHHhcCCccchhHHHcCCc-ceeh-eecHHhHHHHHHHHHHH
Confidence 34455679999999999998643 3332 44456665554444433
No 71
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=86.94 E-value=16 Score=32.84 Aligned_cols=35 Identities=17% Similarity=0.140 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhhhhhhhchhhhhhcC-CCCccccCc
Q 024055 68 VPAALMAIYMTAINQLVDVKIDKINK-PDLPLASGD 102 (273)
Q Consensus 68 l~~~~~~~~~~~~Nd~~D~~~D~~n~-~~Rpl~~G~ 102 (273)
+...+.+..-..+|++.|+|.|+..+ |.-|..-|.
T Consensus 166 ~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~ 201 (284)
T PRK12888 166 LAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGV 201 (284)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCc
Confidence 34444555666899999999999764 444554454
No 72
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=86.77 E-value=19 Score=32.45 Aligned_cols=35 Identities=17% Similarity=0.265 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhhhhhhhchhhhhhcC-CCCccccCc
Q 024055 68 VPAALMAIYMTAINQLVDVKIDKINK-PDLPLASGD 102 (273)
Q Consensus 68 l~~~~~~~~~~~~Nd~~D~~~D~~n~-~~Rpl~~G~ 102 (273)
+..++-+..-..+|++.|+|.|+..+ |.-|..-|.
T Consensus 174 ~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~ 209 (291)
T PRK12874 174 LGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGE 209 (291)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhh
Confidence 34445555556799999999998754 555555554
No 73
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=86.11 E-value=8.2 Score=34.77 Aligned_cols=34 Identities=15% Similarity=0.233 Sum_probs=21.7
Q ss_pred HHHHHHHHHhhhhhhhchhhhhhcC-CCCccccCc
Q 024055 69 PAALMAIYMTAINQLVDVKIDKINK-PDLPLASGD 102 (273)
Q Consensus 69 ~~~~~~~~~~~~Nd~~D~~~D~~n~-~~Rpl~~G~ 102 (273)
..++.+..-..+|++.|+|.|+..+ |.-|..-|+
T Consensus 170 ~~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~ 204 (291)
T PRK12886 170 AVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGV 204 (291)
T ss_pred HHHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCc
Confidence 3334344444578889999998754 556665565
No 74
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=86.06 E-value=7.2 Score=35.38 Aligned_cols=39 Identities=21% Similarity=0.250 Sum_probs=23.5
Q ss_pred HHHHHhhhhhhhchhhhhhcCCCCccccCcCCHHHHHHHHH
Q 024055 73 MAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITL 113 (273)
Q Consensus 73 ~~~~~~~~Nd~~D~~~D~~n~~~Rpl~~G~is~~~a~~~~~ 113 (273)
........||+.|+|.|+.+++ |.++. ++.++.+.....
T Consensus 195 ~~~~i~~~n~~~D~e~D~~~G~-~Tlpv-~lG~~~a~~~~~ 233 (306)
T TIGR02056 195 AGLGIAIVNDFKSVEGDRALGL-QSLPV-AFGIETAAWICV 233 (306)
T ss_pred HHHHHHHHHHccChHHHHHcCC-cCcch-hcChHHHHHHHH
Confidence 3445557999999999998753 22322 333444544444
No 75
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=86.02 E-value=1.8 Score=39.22 Aligned_cols=47 Identities=21% Similarity=0.121 Sum_probs=31.6
Q ss_pred HHHHHHHHhccCChHhhHHc---Ccccc-ceecchHHHHHHHHHHHHHhhh
Q 024055 206 MSLAKALLKDLHDVDGDKEY---GIRTF-SVMLGKERMIKELLNLFKNMDL 252 (273)
Q Consensus 206 ~~~~~~~~~~~~D~e~D~~~---G~~Tl-~v~lG~~~a~~~~~~~~~~~~~ 252 (273)
...+...+||+.|+|.|+++ ..|-+ .-++..+.+..++.++..++..
T Consensus 58 ~~sa~y~iND~~D~e~Dr~~prk~~RPlasG~is~~~A~~~~~~l~~~~l~ 108 (295)
T PRK12324 58 ASSAVYLVNDIRDVEADRLHPTKRNRPIASGVVSVSLAYILAVVLLVASLA 108 (295)
T ss_pred HHHHHHHHHhHHHHHhhccCCCCCCCCCCCCccCHHHHHHHHHHHHHHHHH
Confidence 34567889999999999985 22333 3356777777776666555443
No 76
>PRK11383 hypothetical protein; Provisional
Probab=86.01 E-value=11 Score=30.24 Aligned_cols=82 Identities=16% Similarity=0.169 Sum_probs=37.4
Q ss_pred HHHHHHHHhHhcCCCCCcccc--cchhHHHHHHHHHHhh-hHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHH
Q 024055 135 LILWFILVTAYSIDLPFLRWK--RNAFLAAISIMIGYGV-GIQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKA 211 (273)
Q Consensus 135 ~~~~~~~~~~Ys~~~pP~~lK--~~~~~~~~~v~~~~g~-~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 211 (273)
++.+++..+.|.. -.|-| ..+. .+...+.+|-+ +..++.+.. .+...+...+.-..+...+...+..++.
T Consensus 48 l~lglF~avs~QK---~vRD~~egi~v-t~~f~~~cw~a~l~~i~LL~i---GLwNA~l~lsEKGfY~~af~lsLFgai~ 120 (145)
T PRK11383 48 LVLGLFSAASYQK---TVRDKYEGIPT-TSIYYMTCLTVFIISVALLMV---GLWNATLLLSEKGFYGLAFFLSLFGAVA 120 (145)
T ss_pred HHHHHHHHHHHHH---HHhhcccCCCh-hHHHHHHHHHHHHHHHHHHHH---HHhcCCcchhhhhHHHHHHHHHHHHHHH
Confidence 4455556666653 12334 3343 34666666652 222222211 1222211223333444333322334577
Q ss_pred HHhccCChHhhH
Q 024055 212 LLKDLHDVDGDK 223 (273)
Q Consensus 212 ~~~~~~D~e~D~ 223 (273)
+-+|+||....+
T Consensus 121 vQKn~RD~~~~~ 132 (145)
T PRK11383 121 VQKNIRDAGINP 132 (145)
T ss_pred HHhhhhhhhhcc
Confidence 889999985443
No 77
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=85.30 E-value=4.9 Score=36.99 Aligned_cols=21 Identities=33% Similarity=0.358 Sum_probs=15.9
Q ss_pred HHHHHhhhhhhhchhhhhhcC
Q 024055 73 MAIYMTAINQLVDVKIDKINK 93 (273)
Q Consensus 73 ~~~~~~~~Nd~~D~~~D~~n~ 93 (273)
.......+||..|+|.|+..+
T Consensus 192 ~~~~~~~i~d~~D~egD~~~G 212 (331)
T PRK12392 192 MAIALIIMNDFKSVEGDKEGG 212 (331)
T ss_pred HHHHHHHHHcccchhhHHHcC
Confidence 334444689999999999864
No 78
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=85.21 E-value=7.9 Score=34.47 Aligned_cols=31 Identities=16% Similarity=0.229 Sum_probs=20.5
Q ss_pred HHHHHHHhhhhhhhchhhhhhcC-CCCccccC
Q 024055 71 ALMAIYMTAINQLVDVKIDKINK-PDLPLASG 101 (273)
Q Consensus 71 ~~~~~~~~~~Nd~~D~~~D~~n~-~~Rpl~~G 101 (273)
++.+..-...||+.|+|.|+.++ |.-|..-|
T Consensus 164 f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G 195 (279)
T PRK09573 164 FFSTWSREIVKDIEDIEGDLKENVITLPIKYG 195 (279)
T ss_pred HHHHHHHHHHhhhhhhhhHHHCCCccccHHhh
Confidence 34444555679999999999754 44455444
No 79
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=84.88 E-value=18 Score=32.89 Aligned_cols=23 Identities=9% Similarity=0.216 Sum_probs=17.5
Q ss_pred HHHHHHhhhhhhhchhhhhhcCC
Q 024055 72 LMAIYMTAINQLVDVKIDKINKP 94 (273)
Q Consensus 72 ~~~~~~~~~Nd~~D~~~D~~n~~ 94 (273)
+........||+.|+|.|+.++.
T Consensus 193 ~~~~~~~l~~di~D~egD~~~Gi 215 (308)
T PRK12887 193 VFTFAIAIFKDIPDMEGDRQYQI 215 (308)
T ss_pred HHHHHHHHHHhccchhhHHHcCC
Confidence 44445556999999999998753
No 80
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=84.59 E-value=9.6 Score=34.23 Aligned_cols=40 Identities=18% Similarity=0.046 Sum_probs=25.0
Q ss_pred HHHhhhhhhhchhhhhhcCCCCccccCcCCHHHHHHHHHHHH
Q 024055 75 IYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCA 116 (273)
Q Consensus 75 ~~~~~~Nd~~D~~~D~~n~~~Rpl~~G~is~~~a~~~~~~~~ 116 (273)
......||.-|+|.|+.++++. ++ -++.++.+......+.
T Consensus 178 ~~il~~Nn~~D~~~D~~~Gk~T-l~-v~lG~~~a~~l~~~l~ 217 (284)
T TIGR00751 178 CAVLNINNLRDIPTDARAGKNT-LA-VRLGDARTRMYHQGLL 217 (284)
T ss_pred HHHHHHcCcccchhHHHcCCEe-eh-hhcchHhHHHHHHHHH
Confidence 4445699999999999976532 22 2444555555444433
No 81
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=84.36 E-value=12 Score=33.61 Aligned_cols=36 Identities=8% Similarity=0.027 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhhhhhhhchhhhhhcC-CCCccccCc
Q 024055 67 VVPAALMAIYMTAINQLVDVKIDKINK-PDLPLASGD 102 (273)
Q Consensus 67 ~l~~~~~~~~~~~~Nd~~D~~~D~~n~-~~Rpl~~G~ 102 (273)
.+..++.+..-..+|++.|+|.|+..+ +.-|..-|+
T Consensus 172 ~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~ 208 (290)
T PRK12870 172 WAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGR 208 (290)
T ss_pred HHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhcc
Confidence 344455566666799999999999764 444554444
No 82
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=84.35 E-value=22 Score=31.78 Aligned_cols=35 Identities=14% Similarity=0.084 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhhhhhhhchhhhhhcC-CCCccccCc
Q 024055 68 VPAALMAIYMTAINQLVDVKIDKINK-PDLPLASGD 102 (273)
Q Consensus 68 l~~~~~~~~~~~~Nd~~D~~~D~~n~-~~Rpl~~G~ 102 (273)
+..++-+..-...|++.|+|.|+.++ |.-|..-|.
T Consensus 169 ~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~ 204 (282)
T PRK12848 169 LANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGR 204 (282)
T ss_pred HHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhcc
Confidence 34444455555689999999999865 455555554
No 83
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=83.18 E-value=11 Score=33.84 Aligned_cols=45 Identities=16% Similarity=0.142 Sum_probs=26.2
Q ss_pred HHHHHhhhhhhhchhhhhhcCCCCccccCcCCHHHHHHHHHHHHHHH
Q 024055 73 MAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMS 119 (273)
Q Consensus 73 ~~~~~~~~Nd~~D~~~D~~n~~~Rpl~~G~is~~~a~~~~~~~~~l~ 119 (273)
........||+.|+|.|+.+++ |.++. ++.++.+..+...+..++
T Consensus 180 ~~~~~~~~n~~~D~~~D~~~G~-~Tl~v-~lG~~~a~~~~~~l~~~~ 224 (293)
T PRK06080 180 LIGAVLLANNIRDIETDRENGK-NTLAV-RLGDKNARRLHAALLALA 224 (293)
T ss_pred HHHHHHHhcCCCcchhHHHcCC-eeEEe-eECcHhHHHHHHHHHHHH
Confidence 3444457899999999998753 22322 334455555444444333
No 84
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=81.70 E-value=25 Score=31.78 Aligned_cols=34 Identities=12% Similarity=0.157 Sum_probs=23.1
Q ss_pred HHHHHHHHHhhhhhhhchhhhhhcC-CCCccccCc
Q 024055 69 PAALMAIYMTAINQLVDVKIDKINK-PDLPLASGD 102 (273)
Q Consensus 69 ~~~~~~~~~~~~Nd~~D~~~D~~n~-~~Rpl~~G~ 102 (273)
..++.+..-...||+.|+|.|+.++ +.-|+.-|+
T Consensus 183 ~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~ 217 (297)
T PRK12871 183 FFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGM 217 (297)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeech
Confidence 3344455556799999999999864 455555554
No 85
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=81.55 E-value=22 Score=31.51 Aligned_cols=41 Identities=20% Similarity=0.383 Sum_probs=25.0
Q ss_pred HHHHHHHhhhhhhhchhhhhhcC-CCCccccCcCCHHHHHHHHHH
Q 024055 71 ALMAIYMTAINQLVDVKIDKINK-PDLPLASGDFSIKTGVAITLT 114 (273)
Q Consensus 71 ~~~~~~~~~~Nd~~D~~~D~~n~-~~Rpl~~G~is~~~a~~~~~~ 114 (273)
++...+-..+||+.|.|.|+.++ |.=|..-| ++.+......
T Consensus 167 fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G---~~~t~~~~~~ 208 (276)
T PRK12882 167 ALATLAREIIKDVEDIEGDRAEGARTLPILIG---VRKALYVAAA 208 (276)
T ss_pred HHHHHHHHHHhhhhhhhhHHHcCCccccHHhh---HHHHHHHHHH
Confidence 34444556799999999999865 34444333 3444444433
No 86
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=80.67 E-value=3.4 Score=35.66 Aligned_cols=48 Identities=21% Similarity=0.131 Sum_probs=29.8
Q ss_pred HHHHHHHHHhccCChHhhHHc-Cccccce---ecchHHHHHHHHHHHHHhhh
Q 024055 205 CMSLAKALLKDLHDVDGDKEY-GIRTFSV---MLGKERMIKELLNLFKNMDL 252 (273)
Q Consensus 205 ~~~~~~~~~~~~~D~e~D~~~-G~~Tl~v---~lG~~~a~~~~~~~~~~~~~ 252 (273)
+...+.+..||+.|+|.|+.+ +++.-|. ++..+.+.+.+..+..++.+
T Consensus 34 ~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~~~~~~~~~~~~~~l~l~ 85 (257)
T PF01040_consen 34 LLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRISPRQALIFALILLLLGLL 85 (257)
T ss_pred HHHHHHHHhhChhhhhcCcccccccCcchhHHHHhHHHHHHHHHHHHHHHHH
Confidence 344567889999999999985 3334444 33444455555555555544
No 87
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=80.56 E-value=15 Score=32.80 Aligned_cols=35 Identities=20% Similarity=0.339 Sum_probs=21.8
Q ss_pred HHhhhhhhhchhhhhhcCC-CCccccCcCCHHHHHHHHH
Q 024055 76 YMTAINQLVDVKIDKINKP-DLPLASGDFSIKTGVAITL 113 (273)
Q Consensus 76 ~~~~~Nd~~D~~~D~~n~~-~Rpl~~G~is~~~a~~~~~ 113 (273)
.....||+.|+|.|+.+++ .=|..-| ++.+..+..
T Consensus 176 ~i~~~nd~~D~~~D~~~G~~Tl~v~lG---~~~a~~l~~ 211 (283)
T TIGR01476 176 GIMTLNDFKSVEGDRQLGLRSLPVMIG---VKRAAIVAV 211 (283)
T ss_pred HHHHHHhccchhhHHHcCCcCcceEEc---HHHHHHHHH
Confidence 3457999999999998653 3333334 344444433
No 88
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=80.31 E-value=34 Score=31.14 Aligned_cols=34 Identities=18% Similarity=0.043 Sum_probs=22.2
Q ss_pred HHHHHHHHHhhhhhhhchhhhhhcC-CCCccccCc
Q 024055 69 PAALMAIYMTAINQLVDVKIDKINK-PDLPLASGD 102 (273)
Q Consensus 69 ~~~~~~~~~~~~Nd~~D~~~D~~n~-~~Rpl~~G~ 102 (273)
..++.+..-..++++.|+|.|+..+ |.-|..-|.
T Consensus 200 ~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~ 234 (314)
T PRK12878 200 GSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGD 234 (314)
T ss_pred HHHHHHHHHHHHHHhhhHhhHHHcCCcccchHhch
Confidence 3444455555678999999999754 455555554
No 89
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=79.32 E-value=4.1 Score=36.32 Aligned_cols=46 Identities=15% Similarity=-0.042 Sum_probs=30.6
Q ss_pred HHHHHHHHhccCChHhhHHcCc---cccce-ecchHHHHHHHHHHHHHhh
Q 024055 206 MSLAKALLKDLHDVDGDKEYGI---RTFSV-MLGKERMIKELLNLFKNMD 251 (273)
Q Consensus 206 ~~~~~~~~~~~~D~e~D~~~G~---~Tl~v-~lG~~~a~~~~~~~~~~~~ 251 (273)
...+-+.+||+.|+|-|+++.+ |.+|. ++..|.+..++..+..++.
T Consensus 47 ~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~~~~~g~ 96 (280)
T TIGR01473 47 AAASANAFNMYIDRDIDKKMKRTRNRPLVTGRISPREALAFGLLLGVLGV 96 (280)
T ss_pred HHHHHHHHHhhcccCcCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHH
Confidence 3456788999999999997542 44433 5566777776665555443
No 90
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=77.82 E-value=23 Score=31.62 Aligned_cols=28 Identities=18% Similarity=0.201 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhhhhhhhchhhhhhcCC
Q 024055 67 VVPAALMAIYMTAINQLVDVKIDKINKP 94 (273)
Q Consensus 67 ~l~~~~~~~~~~~~Nd~~D~~~D~~n~~ 94 (273)
.++..+...+--.++|+.|+|-|+.++-
T Consensus 173 ~~~~~l~~~~~~~i~~~~D~e~D~~~G~ 200 (289)
T COG0382 173 LLAAILWTLGYDIIYAIQDIEGDRKAGL 200 (289)
T ss_pred HHHHHHHHHHHHHHHhccCccchHhcCC
Confidence 3444444444456999999999998763
No 91
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=77.77 E-value=13 Score=32.92 Aligned_cols=29 Identities=21% Similarity=0.377 Sum_probs=19.3
Q ss_pred HHHHhhhhhhhchhhhhhcC-CCCccccCc
Q 024055 74 AIYMTAINQLVDVKIDKINK-PDLPLASGD 102 (273)
Q Consensus 74 ~~~~~~~Nd~~D~~~D~~n~-~~Rpl~~G~ 102 (273)
+......||..|+|.|+..+ |.=|..-|.
T Consensus 167 ~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~ 196 (277)
T PRK12883 167 NVAREIMKDIEDIEGDKAKGAKTLPIIIGK 196 (277)
T ss_pred HHHHHHHhhhhhhccHHHcCCcCcChHhcH
Confidence 33444579999999999864 444554443
No 92
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=75.32 E-value=5.7 Score=35.46 Aligned_cols=45 Identities=16% Similarity=-0.023 Sum_probs=30.2
Q ss_pred HHHHHHHHhccCChHhhHHcCc---cccc-eecchHHHHHHHHHHHHHh
Q 024055 206 MSLAKALLKDLHDVDGDKEYGI---RTFS-VMLGKERMIKELLNLFKNM 250 (273)
Q Consensus 206 ~~~~~~~~~~~~D~e~D~~~G~---~Tl~-v~lG~~~a~~~~~~~~~~~ 250 (273)
...+-..+||+.|+|-|+++.+ |.+| -++.++.+..+...+..++
T Consensus 48 ~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~~ 96 (279)
T PRK12869 48 ASGGSAAFNHGIERDIDKVMSRTSKRPTPVGLVNRKEALAVGSALSALG 96 (279)
T ss_pred HHHHHHHHhchHhcCCCCCCCCCCCCCcCCCCcCHHHHHHHHHHHHHHH
Confidence 3456788999999999998543 3333 4557777766665554443
No 93
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=75.27 E-value=33 Score=30.84 Aligned_cols=34 Identities=21% Similarity=0.157 Sum_probs=22.4
Q ss_pred HHHhhhhhhhchhhhhhcCCCCccccCcCCHHHHHH
Q 024055 75 IYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVA 110 (273)
Q Consensus 75 ~~~~~~Nd~~D~~~D~~n~~~Rpl~~G~is~~~a~~ 110 (273)
......||..|+|.|+.++++ .++. ++.++.+..
T Consensus 185 ~~il~~n~~~D~e~D~~~G~~-Tlav-~lG~~~a~~ 218 (296)
T PRK05951 185 ALVLLSNNLRDIEDDERKGIP-TLAV-IFGRRGAAL 218 (296)
T ss_pred HHHHHHCCCccchhHHHCCCe-eeee-eEcHhhHHH
Confidence 445569999999999987643 3332 455555533
No 94
>PRK13595 ubiA prenyltransferase; Provisional
Probab=73.56 E-value=10 Score=34.29 Aligned_cols=38 Identities=21% Similarity=0.106 Sum_probs=24.8
Q ss_pred HHHHHHHhccCChHhhHHcCcc-ccce-ecchHHHHHHHH
Q 024055 207 SLAKALLKDLHDVDGDKEYGIR-TFSV-MLGKERMIKELL 244 (273)
Q Consensus 207 ~~~~~~~~~~~D~e~D~~~G~~-Tl~v-~lG~~~a~~~~~ 244 (273)
....+.+||+.|+|.|+++-++ .++. ++.++.++.+..
T Consensus 60 n~~~~giND~fD~eiDa~Npr~~~i~~G~is~~~~~~~~~ 99 (292)
T PRK13595 60 NLLIYGLNDLADRETDAASPRKGGWQGARLSPGEVRPLLR 99 (292)
T ss_pred HHHHHHHHhhhhhhhhccCCCCCCCCcCccCHHHHHHHHH
Confidence 4467889999999999866433 2222 555666666433
No 95
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=72.27 E-value=76 Score=28.71 Aligned_cols=34 Identities=15% Similarity=0.146 Sum_probs=20.5
Q ss_pred HHHHHHHHHhhhhhhhchhhhhhcC-CCCccccCc
Q 024055 69 PAALMAIYMTAINQLVDVKIDKINK-PDLPLASGD 102 (273)
Q Consensus 69 ~~~~~~~~~~~~Nd~~D~~~D~~n~-~~Rpl~~G~ 102 (273)
..++-+..=..+-...|+|.|+..+ |.-|..-|.
T Consensus 178 ~~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~ 212 (294)
T PRK12873 178 ATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGS 212 (294)
T ss_pred HHHHHHHHHHHHHHHHhHhhHHHcCCcccchhcCh
Confidence 3333343333455667999999865 556666664
No 96
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=72.20 E-value=74 Score=28.60 Aligned_cols=35 Identities=23% Similarity=0.298 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhhhhhhhchhhhhhcC-CCCccccC
Q 024055 67 VVPAALMAIYMTAINQLVDVKIDKINK-PDLPLASG 101 (273)
Q Consensus 67 ~l~~~~~~~~~~~~Nd~~D~~~D~~n~-~~Rpl~~G 101 (273)
.++.++-..+-..+.++.|+|.|+..+ +.-|..=|
T Consensus 165 ~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG 200 (286)
T PRK12895 165 FISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYG 200 (286)
T ss_pred HHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHC
Confidence 344444455556799999999999765 34444334
No 97
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=71.38 E-value=7.7 Score=34.97 Aligned_cols=45 Identities=18% Similarity=-0.060 Sum_probs=30.0
Q ss_pred HHHHHHHhccCChHhhHHcCc---cccc-eecchHHHHHHHHHHHHHhh
Q 024055 207 SLAKALLKDLHDVDGDKEYGI---RTFS-VMLGKERMIKELLNLFKNMD 251 (273)
Q Consensus 207 ~~~~~~~~~~~D~e~D~~~G~---~Tl~-v~lG~~~a~~~~~~~~~~~~ 251 (273)
..+-..+||+.|+|-|+++.+ |.+| -++.+|.+..+..++..++.
T Consensus 57 ~aa~~~iNd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~l~~~g~ 105 (296)
T PRK04375 57 AGAAGALNNYIDRDIDAKMERTKNRPLVTGRISPREALIFGLVLGVLGF 105 (296)
T ss_pred HHHHHHHHhHHhhccCCCCCccCCCCCCCCCcCHHHHHHHHHHHHHHHH
Confidence 456688999999999997532 3333 45677777777665554433
No 98
>PRK08238 hypothetical protein; Validated
Probab=67.39 E-value=12 Score=36.38 Aligned_cols=48 Identities=19% Similarity=0.016 Sum_probs=32.5
Q ss_pred HHHHHHHHHhccCChHhhHHcCc-cccc---eecchHHHHHHHHHHHHHhhh
Q 024055 205 CMSLAKALLKDLHDVDGDKEYGI-RTFS---VMLGKERMIKELLNLFKNMDL 252 (273)
Q Consensus 205 ~~~~~~~~~~~~~D~e~D~~~G~-~Tl~---v~lG~~~a~~~~~~~~~~~~~ 252 (273)
+...+..++||+-|+|.|+++-+ +.=| -++..+.+..++.++..++.+
T Consensus 237 l~~sa~~~~ND~~D~e~Dr~~~rk~~RPlasG~is~~~A~~~~~~l~~~~~~ 288 (479)
T PRK08238 237 LCASAVYILNDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPLLLLAGLA 288 (479)
T ss_pred HHHHHHHHHHhhHHhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 34456789999999999998622 2223 456677777776666555544
No 99
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=64.91 E-value=25 Score=27.00 Aligned_cols=34 Identities=15% Similarity=0.172 Sum_probs=23.6
Q ss_pred hhhhcCCCCccccCcCCHHHHHHHHHHHHHHHHHHH
Q 024055 88 IDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMG 123 (273)
Q Consensus 88 ~D~~n~~~Rpl~~G~is~~~a~~~~~~~~~l~l~l~ 123 (273)
-|+.|+ .|.+=+-+|..|.+..+.+..+++++++
T Consensus 5 p~RLN~--ePvV~rGlT~~El~~~~~~~~~~gl~~g 38 (111)
T TIGR03750 5 PDRLNR--EPVVFRGLTADELGVAAGVGLAAGLVLG 38 (111)
T ss_pred chhhcC--CCceecccCHHHHHHHHHHHHHHHHHHH
Confidence 477774 4666677788998888777666655544
No 100
>PLN02776 prenyltransferase
Probab=60.17 E-value=21 Score=33.05 Aligned_cols=45 Identities=9% Similarity=-0.026 Sum_probs=30.5
Q ss_pred HHHHHHHHhccCChHhhHHcC----ccccceecchHHHHHHHHHHHHHh
Q 024055 206 MSLAKALLKDLHDVDGDKEYG----IRTFSVMLGKERMIKELLNLFKNM 250 (273)
Q Consensus 206 ~~~~~~~~~~~~D~e~D~~~G----~~Tl~v~lG~~~a~~~~~~~~~~~ 250 (273)
...+-..+||+.|+|-|+++. |....-++..+.+..++..+.+++
T Consensus 41 ~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~~~A~~~~~~l~~~g 89 (341)
T PLN02776 41 CAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISVPHAVAWAVVVGAAG 89 (341)
T ss_pred HHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 345667899999999998854 334445667777766665555433
No 101
>PLN02878 homogentisate phytyltransferase
Probab=60.04 E-value=61 Score=29.12 Aligned_cols=37 Identities=14% Similarity=0.222 Sum_probs=22.9
Q ss_pred HHHhhhhhhhchhhhhhcC-CCCccccCcCCHHHHHHHHHH
Q 024055 75 IYMTAINQLVDVKIDKINK-PDLPLASGDFSIKTGVAITLT 114 (273)
Q Consensus 75 ~~~~~~Nd~~D~~~D~~n~-~~Rpl~~G~is~~~a~~~~~~ 114 (273)
.....+||+-|.|-|+..+ +.-|+ ++.++.+...+..
T Consensus 170 ~~i~i~KDi~DieGD~~~Gi~Tlpv---~lG~~~~~~i~~~ 207 (280)
T PLN02878 170 VVIALFKDIPDVEGDRIFGIRSFSV---RLGQKRVFWLCVN 207 (280)
T ss_pred HHHHHHhhCcCchhHHHCCCceech---hhChHHHHHHHHH
Confidence 3444799999999999865 23333 3344555554443
No 102
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=58.39 E-value=1.4e+02 Score=26.82 Aligned_cols=24 Identities=25% Similarity=0.113 Sum_probs=15.8
Q ss_pred hhhhhhchhhhhhcC-CCCccccCc
Q 024055 79 AINQLVDVKIDKINK-PDLPLASGD 102 (273)
Q Consensus 79 ~~Nd~~D~~~D~~n~-~~Rpl~~G~ 102 (273)
.+....|+|.|+..+ |.-|..-|.
T Consensus 184 ~~ya~~D~e~D~~~Gi~sl~v~~G~ 208 (289)
T PLN02809 184 TIYAHQDKEDDLKVGVKSTALRFGD 208 (289)
T ss_pred HHHHHhchhhHHhCCCcccchhhcH
Confidence 455567999999865 455554454
No 103
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=53.81 E-value=78 Score=24.67 Aligned_cols=40 Identities=15% Similarity=0.163 Sum_probs=25.3
Q ss_pred hhhhcCCCCccccCcCCHHHHHHHHHHHHHHHHHHH----HHhchH
Q 024055 88 IDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMG----IMIGSP 129 (273)
Q Consensus 88 ~D~~n~~~Rpl~~G~is~~~a~~~~~~~~~l~l~l~----~~~~~~ 129 (273)
-|+.|+ .|.+=+-+|..|....+.+..+++++++ +..+++
T Consensus 8 p~RLN~--ePvV~rGlT~~El~~~a~~~~~~g~~~gl~la~~~g~~ 51 (121)
T PF11990_consen 8 PDRLNR--EPVVFRGLTADELGLAAGVGFVAGLVVGLPLALLTGWW 51 (121)
T ss_pred hhhhcC--CCCeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477774 4666667788998777766555554443 444554
No 104
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=53.72 E-value=8.3 Score=33.00 Aligned_cols=44 Identities=34% Similarity=0.406 Sum_probs=34.2
Q ss_pred HHHHHHHHhccCChHhhH----------HcCccccceecchHHHHHHHHHHHHH
Q 024055 206 MSLAKALLKDLHDVDGDK----------EYGIRTFSVMLGKERMIKELLNLFKN 249 (273)
Q Consensus 206 ~~~~~~~~~~~~D~e~D~----------~~G~~Tl~v~lG~~~a~~~~~~~~~~ 249 (273)
+..+.++.+|++|+.+|. +.|+.|+|.....+.......-.+-.
T Consensus 158 lG~a~Qi~dd~~D~~~d~~~~gk~~~D~~~gr~tlp~~~~~~~~~~~~~~~~~~ 211 (236)
T cd00867 158 LGLAFQLTDDLLDVFGDAEELGKVGSDLREGRITLPVILARERAAEYAEEAYAA 211 (236)
T ss_pred HHHHHHHHHHhccccCChHHHCccHHHHHcCCchHHHHHHHHHHHHHHHHHHHH
Confidence 346679999999998888 89999999999966666665554443
No 105
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=43.48 E-value=30 Score=22.13 Aligned_cols=17 Identities=12% Similarity=0.360 Sum_probs=13.2
Q ss_pred HHHhhhhhhhchhhhhh
Q 024055 75 IYMTAINQLVDVKIDKI 91 (273)
Q Consensus 75 ~~~~~~Nd~~D~~~D~~ 91 (273)
.+..++|.+.|.++|=.
T Consensus 19 lyl~ald~~CDQg~~F~ 35 (47)
T PRK10299 19 LWAQVFNMMCDQDVQFF 35 (47)
T ss_pred HHHHHHHHHhcCCccce
Confidence 56667999999997654
No 106
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=43.47 E-value=82 Score=22.33 Aligned_cols=43 Identities=16% Similarity=0.107 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHhchHH-HHHHHHHHHHHHhHhcCCCCCcc
Q 024055 109 VAITLTCAMMSLAMGIMIGSPP-LAWGLILWFILVTAYSIDLPFLR 153 (273)
Q Consensus 109 ~~~~~~~~~l~l~l~~~~~~~~-~~~~~~~~~~~~~~Ys~~~pP~~ 153 (273)
.....+..++|++.++..+... .+.+.+++.++..+=.. ||.+
T Consensus 14 ~~il~~~~iisfi~Gy~~q~~~~~~~~~~~g~~~~~lv~v--P~Wp 57 (76)
T PF06645_consen 14 QYILIISAIISFIVGYITQSFSYTFYIYGAGVVLTLLVVV--PPWP 57 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhee--CCcH
Confidence 3334445566777776655432 22233344445555555 6554
No 107
>PRK10581 geranyltranstransferase; Provisional
Probab=42.34 E-value=17 Score=32.85 Aligned_cols=43 Identities=30% Similarity=0.467 Sum_probs=34.6
Q ss_pred HHHHHHHHhccCChH-----------hhHHcCccccceecchHHHHHHHHHHHH
Q 024055 206 MSLAKALLKDLHDVD-----------GDKEYGIRTFSVMLGKERMIKELLNLFK 248 (273)
Q Consensus 206 ~~~~~~~~~~~~D~e-----------~D~~~G~~Tl~v~lG~~~a~~~~~~~~~ 248 (273)
+..+.++..|+.|+. +|.+.|+.|+|+.+|.+.+...+.-..-
T Consensus 215 lG~aFQI~DDilD~~g~~~~~GK~~g~Dl~~gk~T~p~l~~~e~a~~~a~~~~~ 268 (299)
T PRK10581 215 IGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDLID 268 (299)
T ss_pred HHHHHHHHHHHccccCChHHHCCCcchhhhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 346678899999975 4567899999999999999887766554
No 108
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=37.98 E-value=3.1e+02 Score=24.87 Aligned_cols=24 Identities=21% Similarity=0.397 Sum_probs=15.6
Q ss_pred hhhhhhchhhhhhcC-CCCccccCc
Q 024055 79 AINQLVDVKIDKINK-PDLPLASGD 102 (273)
Q Consensus 79 ~~Nd~~D~~~D~~n~-~~Rpl~~G~ 102 (273)
.+.+..|+|.|+..+ +.-|..-|.
T Consensus 190 iiYa~qD~e~D~~~Gl~Slpv~fG~ 214 (300)
T PRK12876 190 IIYAIQDLEFDRKEGLFSIPARFGE 214 (300)
T ss_pred HHHHHcCHhhHHHcCCccchHHHCc
Confidence 355689999999765 344544443
No 109
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=36.70 E-value=1e+02 Score=27.98 Aligned_cols=52 Identities=23% Similarity=0.246 Sum_probs=33.0
Q ss_pred HHHHHHHhhhhhhhchhhhhhcCCCCccccC-cCCHHHHHHHHHHHHHHHHHHHH
Q 024055 71 ALMAIYMTAINQLVDVKIDKINKPDLPLASG-DFSIKTGVAITLTCAMMSLAMGI 124 (273)
Q Consensus 71 ~~~~~~~~~~Nd~~D~~~D~~n~~~Rpl~~G-~is~~~a~~~~~~~~~l~l~l~~ 124 (273)
-.-|.++-++..--|++. .+-|--|.+.| +.+.++.....+.+..+++...+
T Consensus 188 tPpHfwALAl~~~~DY~~--AgiPMlPvv~G~~~t~~~I~~y~~~l~~~sl~~~~ 240 (304)
T COG0109 188 TPPHFWALALKYKDDYKA--AGIPMLPVVKGERRTKRQILLYTLALAPVSLLLAL 240 (304)
T ss_pred ccHHHHHHHHHHHHHHHH--cCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555545544444433 23466777776 56778888888888888777765
No 110
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=34.91 E-value=4e+02 Score=25.21 Aligned_cols=136 Identities=21% Similarity=0.256 Sum_probs=63.5
Q ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHhchHH-H-----HHHHHHHHHHHh--HhcCCC-CCcccccchhHHHHHHHHHHh-
Q 024055 101 GDFSIKTGVAITLTCAMMSLAMGIMIGSPP-L-----AWGLILWFILVT--AYSIDL-PFLRWKRNAFLAAISIMIGYG- 170 (273)
Q Consensus 101 G~is~~~a~~~~~~~~~l~l~l~~~~~~~~-~-----~~~~~~~~~~~~--~Ys~~~-pP~~lK~~~~~~~~~v~~~~g- 170 (273)
+++++|..+.....+++++-+++....... + +.++..+.+.+. .+..+. || -||-.-.+.+..|...+
T Consensus 73 ~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp--~~~~~Aiaiv~~G~tlA~ 150 (394)
T COG2814 73 GRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPP--GKRGRALALVFTGLTLAT 150 (394)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc--cchhhHHHHHHHHHHHHH
Confidence 455667777777777777766553322211 1 111122222222 232222 22 23333345545444444
Q ss_pred -hhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhccC--ChHhhHHcCccccceecchHHHHHHHHHHH
Q 024055 171 -VGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLH--DVDGDKEYGIRTFSVMLGKERMIKELLNLF 247 (273)
Q Consensus 171 -~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~ 247 (273)
.-+++|.|.. . .+| |....+.. ..+..... ......++ |.+++++...++....+.+.+.........
T Consensus 151 v~GvPLGt~ig--~-~~G----WR~~F~~i-a~l~ll~~-~~~~~~lP~~~~~~~~~~~~~~~~~~l~~p~v~~~l~~t~ 221 (394)
T COG2814 151 VLGVPLGTFLG--Q-LFG----WRATFLAI-AVLALLAL-LLLWKLLPPSEISGSLPGPLRTLLRLLRRPGVLLGLLATF 221 (394)
T ss_pred HHhccHHHHHH--H-Hhh----HHHHHHHH-HHHHHHHH-HHHHHhCCCccCCCCCCcchhHHHHHhcCchHHHHHHHHH
Confidence 1255665543 1 233 33222221 22222222 23344566 666666676777777777777655554443
No 111
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=33.75 E-value=3.6e+02 Score=24.37 Aligned_cols=25 Identities=36% Similarity=0.461 Sum_probs=10.8
Q ss_pred HHhhhhhhhchhhhhhcCCCCccccCc
Q 024055 76 YMTAINQLVDVKIDKINKPDLPLASGD 102 (273)
Q Consensus 76 ~~~~~Nd~~D~~~D~~n~~~Rpl~~G~ 102 (273)
.+.+++|.-|++ +..-|.-|...|.
T Consensus 188 ~~~ai~~~~Dy~--~aG~~~lpv~~G~ 212 (306)
T PRK13362 188 YAIAIFRFNDYA--AAGIPVLPVARGI 212 (306)
T ss_pred HHHHHHhHhhHH--HCCCeeeceecCh
Confidence 333455544443 2223445555554
No 112
>PF14256 YwiC: YwiC-like protein
Probab=30.41 E-value=2.7e+02 Score=21.82 Aligned_cols=12 Identities=8% Similarity=-0.108 Sum_probs=9.6
Q ss_pred hHHHHHHHHHHH
Q 024055 37 LNGLVIAVTSIC 48 (273)
Q Consensus 37 ~~~~~~~~~~g~ 48 (273)
|...+.|.+.|.
T Consensus 8 W~Ml~~P~l~G~ 19 (129)
T PF14256_consen 8 WAMLLVPFLLGM 19 (129)
T ss_pred HHHHHHHHHHHH
Confidence 566778888898
No 113
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=29.24 E-value=63 Score=22.52 Aligned_cols=29 Identities=14% Similarity=0.177 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhchhhhhhcC
Q 024055 65 ETVVPAALMAIYMTAINQLVDVKIDKINK 93 (273)
Q Consensus 65 l~~l~~~~~~~~~~~~Nd~~D~~~D~~n~ 93 (273)
+.+++.+++....+..|=|+-+++||.+.
T Consensus 36 IGvi~gi~~~~lt~ltN~YFK~k~drr~~ 64 (68)
T PF04971_consen 36 IGVIGGIFFGLLTYLTNLYFKIKEDRRKA 64 (68)
T ss_pred HHHHHHHHHHHHHHHhHhhhhhhHhhhHh
Confidence 56677777777888899999999998753
No 114
>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.86 E-value=2.4e+02 Score=21.03 Aligned_cols=40 Identities=13% Similarity=0.203 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHhchH-HHHHHHHHHHHHHhHhcCCCCCccc
Q 024055 113 LTCAMMSLAMGIMIGSP-PLAWGLILWFILVTAYSIDLPFLRW 154 (273)
Q Consensus 113 ~~~~~l~l~l~~~~~~~-~~~~~~~~~~~~~~~Ys~~~pP~~l 154 (273)
.+..++|+++++..... ..+..+..++++..+-+. ||.++
T Consensus 33 ti~aiVg~i~Gf~~Qqls~tvy~vg~~~v~t~li~L--PpwP~ 73 (101)
T KOG4112|consen 33 TIGAIVGFIYGFAQQQLSVTVYIVGAGFVFTLLITL--PPWPW 73 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCchh
Confidence 34456677777654321 122223345555566666 88765
No 115
>PF00348 polyprenyl_synt: Polyprenyl synthetase; InterPro: IPR000092 A variety of isoprenoid compounds are synthesized by various organisms. For example in eukaryotes the isoprenoid biosynthetic pathway is responsible for the synthesis of a variety of end products including cholesterol, dolichol, ubiquinone or coenzyme Q. In bacteria this pathway leads to the synthesis of isopentenyl tRNA, isoprenoid quinones, and sugar carrier lipids. Among the enzymes that participate in that pathway, are a number of polyprenyl synthetase enzymes which catalyze a 1'4-condensation between 5 carbon isoprene units. It has been shown [, , , , ] that all the above enzymes share some regions of sequence similarity. Two of these regions are rich in aspartic-acid residues and could be involved in the catalytic mechanism and/or the binding of the substrates.; GO: 0008299 isoprenoid biosynthetic process; PDB: 3AQC_B 3AQB_D 3Q1O_C 3LLW_B 3EFQ_A 3EGT_A 3DYG_A 2P1C_A 2OGD_A 2EWG_B ....
Probab=25.78 E-value=27 Score=30.70 Aligned_cols=35 Identities=31% Similarity=0.372 Sum_probs=0.0
Q ss_pred HHHHHHHHhccCChHh-----------hHHcCccccceecchHHHH
Q 024055 206 MSLAKALLKDLHDVDG-----------DKEYGIRTFSVMLGKERMI 240 (273)
Q Consensus 206 ~~~~~~~~~~~~D~e~-----------D~~~G~~Tl~v~lG~~~a~ 240 (273)
+..+.++.+|+.|..+ |.+.|+.|+|+.++.+++.
T Consensus 178 lG~afQi~DD~~d~~~~~~~~gK~~~~Dl~~gk~Tlp~~~al~~~~ 223 (260)
T PF00348_consen 178 LGIAFQIRDDLLDLFGDEEELGKPVGSDLKEGKPTLPVLHALERAR 223 (260)
T ss_dssp HHHHHHHHHHHHHHHSHHHHHSSTTTHHHHTTTSSHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhhccCcHHHhcccchhHHhcCcccHHHHHHHHhCH
No 116
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II. Members of this family are component II of the heterodimeric heptaprenyl diphosphate synthase. The trusted cutoff was set such that all members identified are encoded near to a recognizable gene for component I (in Pfam family pfam07307). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis.
Probab=25.50 E-value=26 Score=31.97 Aligned_cols=32 Identities=25% Similarity=0.349 Sum_probs=0.0
Q ss_pred HHHHHHHHhccCChH-----------hhHHcCccccceecchH
Q 024055 206 MSLAKALLKDLHDVD-----------GDKEYGIRTFSVMLGKE 237 (273)
Q Consensus 206 ~~~~~~~~~~~~D~e-----------~D~~~G~~Tl~v~lG~~ 237 (273)
+..+.++.+|+.|+. +|.+.|+.|+|+.+..+
T Consensus 202 lG~aFQI~DDilD~~~~~~~~GK~~~~Dl~~gk~Tlp~l~al~ 244 (319)
T TIGR02748 202 VGMSYQITDDILDFVGTEEELGKPAGGDLLQGNVTLPVLYAME 244 (319)
T ss_pred HHHHHHHHHHHHHccCCHHhhCCChhhHHhCCCchHHHHHHhc
No 117
>PF10507 DUF2453: Protein of unknown function (DUF2453); InterPro: IPR019537 The function of these transmembrane protein is not known.
Probab=21.20 E-value=2.8e+02 Score=21.28 Aligned_cols=64 Identities=8% Similarity=0.150 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhhhhhhhch--------hhhhhcCCCCccccCcCCHHHHHHHHHHHHHHHHHHHHHhchHH
Q 024055 67 VVPAALMAIYMTAINQLVDV--------KIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPP 130 (273)
Q Consensus 67 ~l~~~~~~~~~~~~Nd~~D~--------~~D~~n~~~Rpl~~G~is~~~a~~~~~~~~~l~l~l~~~~~~~~ 130 (273)
-++...+....|.+-|.... -.+|..-|.-.+...+...++.......--++|+.++..+|-.+
T Consensus 34 giStmAAAalGN~vSDv~Gi~~~~~vE~~~~rlg~~~P~Lt~~Q~~~~~~r~a~~~G~~~Gv~iGClLGM~P 105 (111)
T PF10507_consen 34 GISTMAAAALGNLVSDVAGIGLGGYVERLAQRLGLKAPVLTPAQLNSRSTRWASNLGRAIGVTIGCLLGMFP 105 (111)
T ss_pred hHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhCCCCCCCCHHHHhChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666666664433 23443222111222222223334444444456666666655433
No 118
>PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed
Probab=20.47 E-value=7.2e+02 Score=23.37 Aligned_cols=16 Identities=13% Similarity=0.167 Sum_probs=10.2
Q ss_pred HHHHHhhhhhhhchhh
Q 024055 73 MAIYMTAINQLVDVKI 88 (273)
Q Consensus 73 ~~~~~~~~Nd~~D~~~ 88 (273)
+...-+++|++++.++
T Consensus 117 ~~~ie~a~N~Iw~v~~ 132 (412)
T PRK04214 117 LHTIEQTFNRIWRVNS 132 (412)
T ss_pred HHHHHHHHHHHhCCCC
Confidence 3444557888887653
No 119
>TIGR00267 conserved hypothetical protein TIGR00267. This family is represented in three of the first four completed archaeal genomes, with two members in A. fulgidus.
Probab=20.32 E-value=4.8e+02 Score=21.30 Aligned_cols=20 Identities=5% Similarity=-0.056 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHhhhhhhh
Q 024055 65 ETVVPAALMAIYMTAINQLV 84 (273)
Q Consensus 65 l~~l~~~~~~~~~~~~Nd~~ 84 (273)
+..++.......+++.++|.
T Consensus 32 ~~Gla~~vA~a~Sma~GeYv 51 (169)
T TIGR00267 32 LAGLGGGVANGMSNAFGAFT 51 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555556666777899998
No 120
>CHL00151 preA prenyl transferase; Reviewed
Probab=20.27 E-value=40 Score=30.75 Aligned_cols=32 Identities=25% Similarity=0.377 Sum_probs=25.1
Q ss_pred HHHHHHHHhccCChHh-----------hHHcCccccceecchH
Q 024055 206 MSLAKALLKDLHDVDG-----------DKEYGIRTFSVMLGKE 237 (273)
Q Consensus 206 ~~~~~~~~~~~~D~e~-----------D~~~G~~Tl~v~lG~~ 237 (273)
+..+.++..|+-|+.+ |.+.|+.|+|+.++.+
T Consensus 207 lG~aFQi~DDilD~~~~~~~~GK~~g~Dl~eGk~Tlp~l~al~ 249 (323)
T CHL00151 207 LGLAFQIIDDVLDITSSTESLGKPIGSDLKNGNLTAPVLFALT 249 (323)
T ss_pred HHHHHHHHHHHhhcccChhhhCCCchhhHhcCchHHHHHHHHh
Confidence 3456788888888754 6788999999999854
No 121
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase. Members of this family all are from cyanobacteria or plastid-containing eukaryotes. A member from Arabidopsis (where both plastoquinone and ubiquinone contain the C(45) prenyl moiety) was characterized by heterologous expression as a solanesyl diphosphate synthase.
Probab=20.19 E-value=51 Score=30.08 Aligned_cols=32 Identities=28% Similarity=0.334 Sum_probs=0.0
Q ss_pred HHHHHHHHhccCChH-----------hhHHcCccccceecchH
Q 024055 206 MSLAKALLKDLHDVD-----------GDKEYGIRTFSVMLGKE 237 (273)
Q Consensus 206 ~~~~~~~~~~~~D~e-----------~D~~~G~~Tl~v~lG~~ 237 (273)
+..+.++..|+.|+. +|.+.|+.|+|+.+..+
T Consensus 206 lG~aFQi~DDild~~~~~~~~GK~~g~Dl~~Gk~Tlp~l~al~ 248 (322)
T TIGR02749 206 LGLAFQVVDDILDFTGSTEQLGKPAGSDLMKGNLTAPVLFALE 248 (322)
T ss_pred HHHHHHHHHHhccCCCChHhhCCChhHHHhCCCchHHHHHHHh
Done!