Query 024055
Match_columns 273
No_of_seqs 212 out of 1393
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 17:25:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024055.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024055hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m0g_A Farnesyl diphosphate sy 53.6 7.7 0.00026 33.8 2.9 46 206-251 208-264 (297)
2 3lsn_A Geranyltranstransferase 50.8 4.2 0.00014 35.7 0.7 53 206-259 215-278 (304)
3 3lom_A Geranyltranstransferase 50.3 4.3 0.00015 35.7 0.7 45 207-251 223-278 (313)
4 3ts7_A Geranyltranstransferase 49.1 4.1 0.00014 36.1 0.4 45 207-251 222-277 (324)
5 4f62_A Geranyltranstransferase 45.7 5.1 0.00017 35.3 0.4 43 207-249 215-268 (317)
6 3p8r_A Geranyltranstransferase 45.0 5 0.00017 35.1 0.3 45 207-251 222-277 (302)
7 3p8l_A Geranyltranstransferase 44.6 5.3 0.00018 34.9 0.4 42 207-248 219-271 (302)
8 3uca_A Geranyltranstransferase 41.6 6.3 0.00021 34.9 0.4 44 207-250 244-298 (324)
9 2h8o_A Geranyltranstransferase 39.9 6.8 0.00023 34.8 0.3 44 207-250 255-309 (335)
10 3llw_A Geranyltranstransferase 38.6 11 0.00037 33.1 1.4 45 206-250 222-275 (311)
11 1rqj_A Geranyltranstransferase 37.4 11 0.00037 32.8 1.2 43 207-249 216-269 (299)
12 1rtr_A Geranyltranstransferase 35.6 8.5 0.00029 33.5 0.3 45 207-251 211-266 (301)
13 2j1p_A Geranylgeranyl pyrophos 35.5 9 0.00031 33.2 0.4 42 206-250 225-266 (293)
14 3pde_A Farnesyl-diphosphate sy 34.8 14 0.00048 32.4 1.5 44 207-250 218-272 (309)
15 3kra_B Geranyl diphosphate syn 27.4 54 0.0019 27.9 4.0 45 208-252 74-118 (274)
16 3npk_A Geranyltranstransferase 23.6 23 0.00079 30.6 0.9 42 206-247 207-257 (291)
17 3oyr_A Trans-isoprenyl diphosp 22.0 23 0.00079 31.4 0.6 33 206-238 224-267 (345)
18 2kvh_A Zinc finger and BTB dom 21.6 23 0.0008 17.3 0.3 10 264-273 1-10 (27)
19 2e8v_A Geranylgeranyl pyrophos 21.2 24 0.00081 31.2 0.5 34 207-240 207-251 (340)
No 1
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=53.59 E-value=7.7 Score=33.80 Aligned_cols=46 Identities=28% Similarity=0.398 Sum_probs=29.1
Q ss_pred HHHHHHHHhccCChHh-----------hHHcCccccceecchHHHHHHHHHHHHHhh
Q 024055 206 MSLAKALLKDLHDVDG-----------DKEYGIRTFSVMLGKERMIKELLNLFKNMD 251 (273)
Q Consensus 206 ~~~~~~~~~~~~D~e~-----------D~~~G~~Tl~v~lG~~~a~~~~~~~~~~~~ 251 (273)
+..+.++.+|+.|+.+ |.+.|+.|+|+.+|.++++....-..--+.
T Consensus 208 lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~~~~~~~~A~ 264 (297)
T 3m0g_A 208 LGLAFQIADDILDVEGNEEAAGKRLGKDAEAHKATFVSLLGLAGAKSRAADLVAEAE 264 (297)
T ss_dssp HHHHHHHHTTCC---------------------CCHHHHHCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456799999999865 667899999999999999988776655443
No 2
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=50.78 E-value=4.2 Score=35.67 Aligned_cols=53 Identities=23% Similarity=0.256 Sum_probs=34.8
Q ss_pred HHHHHHHHhccCChHh-----------hHHcCccccceecchHHHHHHHHHHHHHhhhhccCCCC
Q 024055 206 MSLAKALLKDLHDVDG-----------DKEYGIRTFSVMLGKERMIKELLNLFKNMDLEDESPLP 259 (273)
Q Consensus 206 ~~~~~~~~~~~~D~e~-----------D~~~G~~Tl~v~lG~~~a~~~~~~~~~~~~~~~~~~~~ 259 (273)
+..+.++..|+.|+.+ |.+.|+.|+|+.+|.++++..+.-..--+.- ...++|
T Consensus 215 lGlaFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~~~~A~~-~L~~l~ 278 (304)
T 3lsn_A 215 IGLAFQVQDDILDVESDTATLGKRQGADIARDKPTYPALLGLAAAKEYALELRDQALH-ALRPFD 278 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC------------CCHHHHHCHHHHHHHHHHHHHHHHH-HTTTSC
T ss_pred HHHHHHHHHHHHhccCChHHhCCCcccHHhcCCccHHHHHHHHHHHHHHHHHHHHHHH-HHHhCc
Confidence 3456788889988865 6678999999999999999888777655443 134454
No 3
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=50.34 E-value=4.3 Score=35.73 Aligned_cols=45 Identities=18% Similarity=0.268 Sum_probs=32.1
Q ss_pred HHHHHHHhccCChHh-----------hHHcCccccceecchHHHHHHHHHHHHHhh
Q 024055 207 SLAKALLKDLHDVDG-----------DKEYGIRTFSVMLGKERMIKELLNLFKNMD 251 (273)
Q Consensus 207 ~~~~~~~~~~~D~e~-----------D~~~G~~Tl~v~lG~~~a~~~~~~~~~~~~ 251 (273)
..+.++..|+.|+.+ |.+.|+.|+|+.+|.++++....-+.--+.
T Consensus 223 GlaFQI~DDilD~~gd~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~a~~~~~~A~ 278 (313)
T 3lom_A 223 GLVFQMQDDYLDLYAPTQILGKGRSSDQANQKTTFATLFNKQQLEEEIAVHYQIAM 278 (313)
T ss_dssp HHHHHHHHHHHHHHCC---------------CCCHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCHHhhCCCCcchhhcCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 456688888888755 668899999999999999988877766544
No 4
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=49.06 E-value=4.1 Score=36.09 Aligned_cols=45 Identities=16% Similarity=0.252 Sum_probs=31.7
Q ss_pred HHHHHHHhccCChHh-----------hHHcCccccceecchHHHHHHHHHHHHHhh
Q 024055 207 SLAKALLKDLHDVDG-----------DKEYGIRTFSVMLGKERMIKELLNLFKNMD 251 (273)
Q Consensus 207 ~~~~~~~~~~~D~e~-----------D~~~G~~Tl~v~lG~~~a~~~~~~~~~~~~ 251 (273)
..+.++..|+.|+.+ |.+.|+.|+|+.+|.++++..+.-..--+.
T Consensus 222 GlAFQI~DDiLD~~~d~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~~~~~A~ 277 (324)
T 3ts7_A 222 GLAFQIQDDILDEESDTQTLGKTRGKDRDHNKPNYPALLGLSGAKEKAEEMHEAAL 277 (324)
T ss_dssp HHHHHHHHHHHHHTCC---------------CCCHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 456688888887754 678899999999999999988877765544
No 5
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=45.74 E-value=5.1 Score=35.35 Aligned_cols=43 Identities=23% Similarity=0.332 Sum_probs=30.7
Q ss_pred HHHHHHHhccCChH-----------hhHHcCccccceecchHHHHHHHHHHHHH
Q 024055 207 SLAKALLKDLHDVD-----------GDKEYGIRTFSVMLGKERMIKELLNLFKN 249 (273)
Q Consensus 207 ~~~~~~~~~~~D~e-----------~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~ 249 (273)
..+.++..|+.|+. +|.+.|+.|+|+.+|.++++..+.-..--
T Consensus 215 GlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~~~~~ 268 (317)
T 4f62_A 215 GLAFQVQDDIIDLTSDTETLGKTQFSDAEANKATYPKLLGLDGAKALVVRLHEQ 268 (317)
T ss_dssp HHHHHHHHHHHHTC----------------CCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCChHhhCCCcchHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 45668888888874 46778999999999999999887766543
No 6
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=45.00 E-value=5 Score=35.07 Aligned_cols=45 Identities=24% Similarity=0.336 Sum_probs=30.9
Q ss_pred HHHHHHHhccCChHh-----------hHHcCccccceecchHHHHHHHHHHHHHhh
Q 024055 207 SLAKALLKDLHDVDG-----------DKEYGIRTFSVMLGKERMIKELLNLFKNMD 251 (273)
Q Consensus 207 ~~~~~~~~~~~D~e~-----------D~~~G~~Tl~v~lG~~~a~~~~~~~~~~~~ 251 (273)
..+.++..|+.|+.+ |.+.|+.|+|+.+|.++++..+.-..--|.
T Consensus 222 G~aFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~~~~A~ 277 (302)
T 3p8r_A 222 GLAFQVQDDILDIISDTETLGKPQGSDQELNKSTYPALLGLEGAQQKAHTLLQEAL 277 (302)
T ss_dssp HHHHHHHHHHHHHTTC---------------CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCHHHhCCCcchHHhcCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677788777654 667899999999999999988877665443
No 7
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=44.63 E-value=5.3 Score=34.95 Aligned_cols=42 Identities=24% Similarity=0.311 Sum_probs=27.5
Q ss_pred HHHHHHHhccCChH-----------hhHHcCccccceecchHHHHHHHHHHHH
Q 024055 207 SLAKALLKDLHDVD-----------GDKEYGIRTFSVMLGKERMIKELLNLFK 248 (273)
Q Consensus 207 ~~~~~~~~~~~D~e-----------~D~~~G~~Tl~v~lG~~~a~~~~~~~~~ 248 (273)
..+.++..|+.|+. +|.+.|+.|+|+.+|.++++....-..-
T Consensus 219 GlaFQI~DDilD~~~d~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~~~~~~~ 271 (302)
T 3p8l_A 219 GLAFQIRDDLLDATSTEADLGKKVGRDEALNKSTYPALLGIAGAKDALTHQLA 271 (302)
T ss_dssp HHHHHHHHHHHHTTC-----------------CCHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCHHHhCCChhhHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 45667888887774 5778899999999999999887765543
No 8
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=41.64 E-value=6.3 Score=34.86 Aligned_cols=44 Identities=25% Similarity=0.341 Sum_probs=28.2
Q ss_pred HHHHHHHhccCChH-----------hhHHcCccccceecchHHHHHHHHHHHHHh
Q 024055 207 SLAKALLKDLHDVD-----------GDKEYGIRTFSVMLGKERMIKELLNLFKNM 250 (273)
Q Consensus 207 ~~~~~~~~~~~D~e-----------~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~~ 250 (273)
..+.++..|+.|+. +|.+.|+.|+|+.+|.++++..+.-..--|
T Consensus 244 GlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~~~a~~~~~~A 298 (324)
T 3uca_A 244 GLAFQIKDDILDVVGNAKDLGKNVHKDQESNKNNYITIFGLEECKKKCVNITEEC 298 (324)
T ss_dssp HHHHHHHHHHHHHCCC-----------------CHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCHHHhCCCcchHhhcCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888887774 477889999999999999998877765543
No 9
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=39.89 E-value=6.8 Score=34.81 Aligned_cols=44 Identities=23% Similarity=0.277 Sum_probs=30.0
Q ss_pred HHHHHHHhccCChHh-----------hHHcCccccceecchHHHHHHHHHHHHHh
Q 024055 207 SLAKALLKDLHDVDG-----------DKEYGIRTFSVMLGKERMIKELLNLFKNM 250 (273)
Q Consensus 207 ~~~~~~~~~~~D~e~-----------D~~~G~~Tl~v~lG~~~a~~~~~~~~~~~ 250 (273)
..+.++..|+-|+.+ |.+.|+.|+|+.+|.+.++....-..--+
T Consensus 255 GlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~~le~a~~~a~~~~~~A 309 (335)
T 2h8o_A 255 GLSFQLADDLLDLTADAATMGKATGKDAARGKGTLVALRGEAWAREKLQEQVAEA 309 (335)
T ss_dssp HHHHHHHHHHHHHC-----------------CCCHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHhCCCcchHHhcCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 456688888877754 66789999999999999888877665544
No 10
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=38.57 E-value=11 Score=33.10 Aligned_cols=45 Identities=29% Similarity=0.374 Sum_probs=33.3
Q ss_pred HHHHHHHHhccCChHhhH---------HcCccccceecchHHHHHHHHHHHHHh
Q 024055 206 MSLAKALLKDLHDVDGDK---------EYGIRTFSVMLGKERMIKELLNLFKNM 250 (273)
Q Consensus 206 ~~~~~~~~~~~~D~e~D~---------~~G~~Tl~v~lG~~~a~~~~~~~~~~~ 250 (273)
+..+.++..|+.|+.+|. +.|+.|+|+.+|.+++.....-++--+
T Consensus 222 lGlaFQI~DDiLD~~gd~~~~GK~~g~~~gK~T~p~l~~l~~a~~~~~~~~~~a 275 (311)
T 3llw_A 222 MGLCFQVLDDIIDVTQDEEESGKTTHLDSAKNSFVNLLGLERANNYAQTLKTEV 275 (311)
T ss_dssp HHHHHHHHHHHHHHHC-------------CCSCHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCChHHHCcccccccCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 345678899999998775 579999999999999987776665543
No 11
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=37.40 E-value=11 Score=32.83 Aligned_cols=43 Identities=33% Similarity=0.512 Sum_probs=32.6
Q ss_pred HHHHHHHhccCChHh-----------hHHcCccccceecchHHHHHHHHHHHHH
Q 024055 207 SLAKALLKDLHDVDG-----------DKEYGIRTFSVMLGKERMIKELLNLFKN 249 (273)
Q Consensus 207 ~~~~~~~~~~~D~e~-----------D~~~G~~Tl~v~lG~~~a~~~~~~~~~~ 249 (273)
..+.++..|+.|+.+ |.+.|+.|+|+.+|.++++....-..--
T Consensus 216 G~aFQi~DD~lD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~~~~~~~~ 269 (299)
T 1rqj_A 216 GLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDLIDD 269 (299)
T ss_dssp HHHHHHHHHHHHHHSCHHHHSSCTTHHHHHTCCCHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCHHHhCCChhhHHHcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 455678888877754 5677999999999999988776655443
No 12
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=35.64 E-value=8.5 Score=33.55 Aligned_cols=45 Identities=24% Similarity=0.249 Sum_probs=30.8
Q ss_pred HHHHHHHhccCChHh-----------hHHcCccccceecchHHHHHHHHHHHHHhh
Q 024055 207 SLAKALLKDLHDVDG-----------DKEYGIRTFSVMLGKERMIKELLNLFKNMD 251 (273)
Q Consensus 207 ~~~~~~~~~~~D~e~-----------D~~~G~~Tl~v~lG~~~a~~~~~~~~~~~~ 251 (273)
..+.++..|+.|+.+ |.+.|+.|+|+.+|.+.++..+.-..--|.
T Consensus 211 G~aFQI~DDilD~~~d~~~~GK~~g~Dl~~gK~T~p~l~al~~a~~~a~~~~~~A~ 266 (301)
T 1rtr_A 211 GMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVSLLGKDGAEDKLTYHRDAAV 266 (301)
T ss_dssp HHHHHHHHHHHHHHHHHCC-------------CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHhCCCcchHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 456688888888854 566799999999999999888777665443
No 13
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=35.46 E-value=9 Score=33.25 Aligned_cols=42 Identities=19% Similarity=0.235 Sum_probs=33.5
Q ss_pred HHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHHHh
Q 024055 206 MSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNM 250 (273)
Q Consensus 206 ~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~~ 250 (273)
+..+.++..|+-|+.+|. +.|+|+.+|.+.++..+.-..--+
T Consensus 225 lG~aFQI~DDiLD~~~~~---K~T~p~l~gle~a~~~a~~~~~~A 266 (293)
T 2j1p_A 225 IGLLFQVVDDILDVTKSS---KLTYPKLMGLEKSREFAEKLNTEA 266 (293)
T ss_dssp HHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCc---cccHHHHHHHHHHHHHHHHHHHHH
Confidence 345678999999999998 899999999999998887775544
No 14
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=34.85 E-value=14 Score=32.37 Aligned_cols=44 Identities=23% Similarity=0.245 Sum_probs=32.8
Q ss_pred HHHHHHHhccCChH-----------hhHHcCccccceecchHHHHHHHHHHHHHh
Q 024055 207 SLAKALLKDLHDVD-----------GDKEYGIRTFSVMLGKERMIKELLNLFKNM 250 (273)
Q Consensus 207 ~~~~~~~~~~~D~e-----------~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~~ 250 (273)
..+.++..|+.|+. +|.+.|+.|+|+.+|.+++.....-++--+
T Consensus 218 GlaFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~~~~~~~~~~a 272 (309)
T 3pde_A 218 GLAFQIYDDILDVVSSPAEMGKATQKDADEAKNTYPGKLGLIGANQALIDTIHSG 272 (309)
T ss_dssp HHHHHHHHHHHHHHCC-----------CTTTSSSHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHhHHHHHHHHHHH
Confidence 45668888888875 477889999999999999887666555433
No 15
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=27.41 E-value=54 Score=27.93 Aligned_cols=45 Identities=11% Similarity=-0.059 Sum_probs=35.3
Q ss_pred HHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHHHhhh
Q 024055 208 LAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDL 252 (273)
Q Consensus 208 ~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~~~~ 252 (273)
.+..+..|+++.++|.+.|+.|.=.++|...+....-.++..++-
T Consensus 74 ~aSLIHDDI~~dD~d~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~ 118 (274)
T 3kra_B 74 AAAYVHEHLPLTDGSRPVSKPAIQHKYGPNVELLTGDGIVPFGFE 118 (274)
T ss_dssp HHHHHHHTCCCSSSSSCCCSSCCCCSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCcccCCccCCCCCCchhhcChHHHHHHHHHHHHHHHH
Confidence 345678899844445679999999999999998888887776654
No 16
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=23.61 E-value=23 Score=30.64 Aligned_cols=42 Identities=31% Similarity=0.392 Sum_probs=0.0
Q ss_pred HHHHHHHHhccCChHhhHHc---------CccccceecchHHHHHHHHHHH
Q 024055 206 MSLAKALLKDLHDVDGDKEY---------GIRTFSVMLGKERMIKELLNLF 247 (273)
Q Consensus 206 ~~~~~~~~~~~~D~e~D~~~---------G~~Tl~v~lG~~~a~~~~~~~~ 247 (273)
+..+.++..|+.|+.+|.+. |+.|+|+.+|.+++.....-++
T Consensus 207 lGlaFQI~DDiLD~~gd~~~~GK~~~~d~gK~T~p~l~~l~~a~~~~~~~~ 257 (291)
T 3npk_A 207 LGLIFQINDDIIDVTTSQEQSGKPTNNDIHKNSFVNLLGLEQAIKTKENLL 257 (291)
T ss_dssp HHHHHHHHHHHHHHC----------------CCHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCChHHHCCccchhcCcchHHHHHHHHHhHHHHHHHH
No 17
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=22.03 E-value=23 Score=31.41 Aligned_cols=33 Identities=33% Similarity=0.414 Sum_probs=0.0
Q ss_pred HHHHHHHHhccCChHh-----------hHHcCccccceecchHH
Q 024055 206 MSLAKALLKDLHDVDG-----------DKEYGIRTFSVMLGKER 238 (273)
Q Consensus 206 ~~~~~~~~~~~~D~e~-----------D~~~G~~Tl~v~lG~~~ 238 (273)
+..+.++..|+.|+.+ |.+.|+.|+|+.++.++
T Consensus 224 lG~aFQi~DD~lD~~~d~~~~GK~~g~Dl~egK~TlP~i~al~~ 267 (345)
T 3oyr_A 224 LGLAFQLADDALDYGGATETLGKNAGDDFREGKATLPLLLAIAR 267 (345)
T ss_dssp HHHHHHHHHHHTTC-------------------CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCChhhcCCCccchhhcCchHHHHHHHHHh
No 18
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=21.60 E-value=23 Score=17.28 Aligned_cols=10 Identities=30% Similarity=0.630 Sum_probs=7.1
Q ss_pred CCCCCCccCC
Q 024055 264 DKPRGCEHVG 273 (273)
Q Consensus 264 ~~~~~~~~~~ 273 (273)
+||.+|+.+|
T Consensus 1 ek~~~C~~C~ 10 (27)
T 2kvh_A 1 EKPFSCSLCP 10 (27)
T ss_dssp CCCEECSSSS
T ss_pred CcCccCCCcC
Confidence 4778888765
No 19
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=21.17 E-value=24 Score=31.21 Aligned_cols=34 Identities=12% Similarity=0.148 Sum_probs=26.4
Q ss_pred HHHHHHHhccCChH-----------hhHHcCccccceecchHHHH
Q 024055 207 SLAKALLKDLHDVD-----------GDKEYGIRTFSVMLGKERMI 240 (273)
Q Consensus 207 ~~~~~~~~~~~D~e-----------~D~~~G~~Tl~v~lG~~~a~ 240 (273)
..+.++..|+-|+. +|.+.|+.|+|+.++.+++.
T Consensus 207 G~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~Tlp~i~al~~~~ 251 (340)
T 2e8v_A 207 GIIYQIRDDYLNLKDFQMSSEKGFAEDITEGKLSFPIVHALNFTK 251 (340)
T ss_dssp HHHHHHHHHHHHHHC-----CCCTTHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCChhhhCCCchhhHhcCCchHHHHHHHHhCc
Confidence 45567788887775 57778999999999988754
Done!