Query 024056
Match_columns 273
No_of_seqs 201 out of 1921
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 08:36:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024056.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024056hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628 Predicted E3 ubiquitin 99.6 5.5E-16 1.2E-20 143.5 5.7 82 155-266 206-288 (348)
2 PF13639 zf-RING_2: Ring finge 99.5 2.9E-15 6.3E-20 99.3 2.2 43 210-252 2-44 (44)
3 PF12678 zf-rbx1: RING-H2 zinc 99.3 3.1E-12 6.6E-17 94.1 3.9 45 208-252 19-73 (73)
4 PHA02929 N1R/p28-like protein; 99.2 8E-12 1.7E-16 111.1 4.8 51 207-257 173-228 (238)
5 KOG0317 Predicted E3 ubiquitin 99.1 2.4E-11 5.2E-16 109.1 3.9 53 204-259 235-287 (293)
6 COG5540 RING-finger-containing 99.1 2E-11 4.4E-16 110.0 3.3 50 208-257 323-373 (374)
7 PLN03208 E3 ubiquitin-protein 99.1 3E-11 6.6E-16 103.6 4.3 52 205-259 15-82 (193)
8 COG5243 HRD1 HRD ubiquitin lig 99.1 3.6E-11 7.7E-16 111.0 3.6 57 206-262 285-352 (491)
9 PF13920 zf-C3HC4_3: Zinc fing 99.0 1.7E-10 3.7E-15 78.4 2.7 46 208-256 2-48 (50)
10 PF13923 zf-C3HC4_2: Zinc fing 99.0 2.6E-10 5.6E-15 73.6 3.0 39 211-251 1-39 (39)
11 KOG0823 Predicted E3 ubiquitin 99.0 3.3E-10 7.1E-15 99.1 4.0 52 206-260 45-99 (230)
12 KOG0320 Predicted E3 ubiquitin 99.0 3.9E-10 8.5E-15 94.8 3.4 54 204-258 127-180 (187)
13 cd00162 RING RING-finger (Real 99.0 6.2E-10 1.3E-14 72.3 3.5 44 210-255 1-45 (45)
14 PF15227 zf-C3HC4_4: zinc fing 98.9 1.5E-09 3.2E-14 71.3 2.5 38 211-251 1-42 (42)
15 PHA02926 zinc finger-like prot 98.8 1.5E-09 3.2E-14 94.6 2.0 51 206-256 168-230 (242)
16 KOG0802 E3 ubiquitin ligase [P 98.8 2E-09 4.3E-14 106.9 2.4 53 206-258 289-343 (543)
17 smart00504 Ubox Modified RING 98.8 6.3E-09 1.4E-13 73.5 3.9 46 209-257 2-47 (63)
18 PF00097 zf-C3HC4: Zinc finger 98.7 6.4E-09 1.4E-13 67.4 2.4 39 211-251 1-41 (41)
19 PF12861 zf-Apc11: Anaphase-pr 98.7 9E-09 1.9E-13 77.2 3.4 50 207-256 20-82 (85)
20 PF14634 zf-RING_5: zinc-RING 98.7 1E-08 2.2E-13 67.9 2.9 44 210-253 1-44 (44)
21 smart00184 RING Ring finger. E 98.7 1.7E-08 3.7E-13 63.2 3.2 38 211-251 1-39 (39)
22 TIGR00599 rad18 DNA repair pro 98.6 1.5E-08 3.3E-13 96.3 3.4 49 206-257 24-72 (397)
23 COG5194 APC11 Component of SCF 98.4 1.3E-07 2.7E-12 69.6 2.9 47 210-256 33-81 (88)
24 COG5574 PEX10 RING-finger-cont 98.4 8.6E-08 1.9E-12 85.4 2.3 51 206-259 213-265 (271)
25 KOG1734 Predicted RING-contain 98.4 7.6E-08 1.6E-12 85.9 0.4 51 207-257 223-282 (328)
26 KOG2164 Predicted E3 ubiquitin 98.3 2.5E-07 5.3E-12 89.2 2.7 50 208-260 186-240 (513)
27 KOG0287 Postreplication repair 98.3 1.5E-07 3.2E-12 86.5 0.7 50 206-258 21-70 (442)
28 PF04564 U-box: U-box domain; 98.3 4.2E-07 9.2E-12 66.6 2.5 49 207-258 3-52 (73)
29 PF13445 zf-RING_UBOX: RING-ty 98.2 7.6E-07 1.6E-11 58.7 2.8 38 211-249 1-43 (43)
30 KOG2930 SCF ubiquitin ligase, 98.2 5.7E-07 1.2E-11 69.3 2.1 48 207-254 45-106 (114)
31 KOG0311 Predicted E3 ubiquitin 98.2 1.8E-07 3.9E-12 86.4 -1.6 61 206-269 41-103 (381)
32 KOG0804 Cytoplasmic Zn-finger 98.2 1.2E-06 2.7E-11 83.1 3.7 89 146-256 133-222 (493)
33 smart00744 RINGv The RING-vari 98.2 1.4E-06 3.1E-11 59.0 2.9 42 210-252 1-49 (49)
34 TIGR00570 cdk7 CDK-activating 98.1 1.4E-06 3.1E-11 80.0 3.3 52 208-259 3-57 (309)
35 COG5432 RAD18 RING-finger-cont 98.1 9.2E-07 2E-11 79.8 1.9 48 207-257 24-71 (391)
36 KOG2177 Predicted E3 ubiquitin 98.1 8.1E-07 1.7E-11 79.0 1.4 45 206-253 11-55 (386)
37 KOG1493 Anaphase-promoting com 98.1 4.4E-07 9.5E-12 66.2 -0.3 50 207-256 19-81 (84)
38 KOG0828 Predicted E3 ubiquitin 98.1 1.2E-06 2.7E-11 83.9 1.4 52 206-257 569-635 (636)
39 PF11793 FANCL_C: FANCL C-term 98.0 1.1E-06 2.3E-11 64.1 -0.1 51 208-258 2-68 (70)
40 COG5219 Uncharacterized conser 98.0 2E-06 4.3E-11 87.8 0.6 53 204-256 1465-1523(1525)
41 KOG0825 PHD Zn-finger protein 97.9 4.5E-06 9.8E-11 83.8 1.2 51 207-257 122-172 (1134)
42 KOG0827 Predicted E3 ubiquitin 97.8 7.6E-06 1.7E-10 76.5 1.8 47 210-256 6-56 (465)
43 KOG1039 Predicted E3 ubiquitin 97.8 1.3E-05 2.9E-10 75.0 2.9 56 206-261 159-226 (344)
44 KOG4265 Predicted E3 ubiquitin 97.8 1.5E-05 3.3E-10 74.0 3.0 53 206-261 288-341 (349)
45 PF14835 zf-RING_6: zf-RING of 97.7 6.5E-06 1.4E-10 58.4 -0.2 47 207-257 6-52 (65)
46 KOG1645 RING-finger-containing 97.7 2.7E-05 5.9E-10 73.3 3.2 49 207-255 3-55 (463)
47 KOG4445 Uncharacterized conser 97.6 2.4E-05 5.2E-10 71.1 1.1 52 207-258 114-188 (368)
48 KOG0824 Predicted E3 ubiquitin 97.5 3.6E-05 7.8E-10 70.0 1.7 49 209-260 8-57 (324)
49 KOG0978 E3 ubiquitin ligase in 97.5 2.7E-05 5.9E-10 78.4 0.3 50 207-259 642-692 (698)
50 KOG4159 Predicted E3 ubiquitin 97.5 6.3E-05 1.4E-09 71.8 2.6 49 206-257 82-130 (398)
51 KOG4172 Predicted E3 ubiquitin 97.4 2.8E-05 6.1E-10 53.3 -0.3 46 209-257 8-55 (62)
52 KOG1941 Acetylcholine receptor 97.3 7.9E-05 1.7E-09 70.0 1.3 51 206-256 363-416 (518)
53 PF11789 zf-Nse: Zinc-finger o 97.2 0.0002 4.2E-09 50.1 2.1 43 206-250 9-53 (57)
54 KOG0297 TNF receptor-associate 97.1 0.00021 4.5E-09 68.5 1.6 53 206-260 19-71 (391)
55 KOG2660 Locus-specific chromos 97.0 0.00016 3.5E-09 66.6 -0.0 50 206-258 13-63 (331)
56 KOG1428 Inhibitor of type V ad 96.9 0.00051 1.1E-08 73.2 2.6 51 206-256 3484-3544(3738)
57 COG5152 Uncharacterized conser 96.9 0.00044 9.5E-09 59.6 1.6 44 208-254 196-239 (259)
58 KOG4692 Predicted E3 ubiquitin 96.8 0.00099 2.1E-08 62.0 3.3 53 204-259 418-470 (489)
59 KOG1785 Tyrosine kinase negati 96.7 0.00057 1.2E-08 64.5 1.1 49 209-260 370-420 (563)
60 KOG2879 Predicted E3 ubiquitin 96.7 0.0016 3.6E-08 58.7 4.0 49 206-256 237-287 (298)
61 KOG1813 Predicted E3 ubiquitin 96.5 0.0012 2.7E-08 60.1 1.4 47 207-256 240-286 (313)
62 KOG0801 Predicted E3 ubiquitin 96.4 0.001 2.2E-08 55.6 0.6 30 206-235 175-204 (205)
63 PF14570 zf-RING_4: RING/Ubox 96.2 0.0031 6.6E-08 42.4 1.8 45 211-255 1-47 (48)
64 KOG3970 Predicted E3 ubiquitin 96.1 0.0042 9E-08 54.7 2.9 47 208-255 50-104 (299)
65 PF10367 Vps39_2: Vacuolar sor 96.1 0.0027 5.8E-08 49.0 1.3 33 206-239 76-108 (109)
66 KOG3039 Uncharacterized conser 96.0 0.013 2.8E-07 52.3 5.3 53 207-259 220-273 (303)
67 KOG2114 Vacuolar assembly/sort 96.0 0.0027 6E-08 64.9 1.2 44 207-255 839-882 (933)
68 PF12906 RINGv: RING-variant d 95.8 0.0073 1.6E-07 40.4 2.3 40 211-251 1-47 (47)
69 PF05883 Baculo_RING: Baculovi 95.7 0.0049 1.1E-07 50.2 1.5 36 208-243 26-67 (134)
70 KOG0826 Predicted E3 ubiquitin 95.6 0.0092 2E-07 55.2 2.8 46 206-254 298-344 (357)
71 KOG1952 Transcription factor N 95.5 0.0049 1.1E-07 63.1 0.7 48 206-253 189-244 (950)
72 KOG1814 Predicted E3 ubiquitin 95.3 0.0077 1.7E-07 57.2 1.6 37 208-244 184-220 (445)
73 KOG3268 Predicted E3 ubiquitin 95.3 0.0099 2.2E-07 50.6 2.1 56 206-261 163-233 (234)
74 PHA03096 p28-like protein; Pro 95.3 0.0079 1.7E-07 55.2 1.5 47 209-255 179-236 (284)
75 COG5236 Uncharacterized conser 95.2 0.015 3.2E-07 54.3 3.1 51 202-255 55-107 (493)
76 KOG1571 Predicted E3 ubiquitin 95.2 0.015 3.2E-07 54.5 2.8 44 207-256 304-347 (355)
77 PHA02862 5L protein; Provision 95.1 0.013 2.9E-07 48.2 2.2 45 209-257 3-54 (156)
78 COG5175 MOT2 Transcriptional r 95.1 0.012 2.7E-07 54.6 2.1 53 207-259 13-67 (480)
79 COG5222 Uncharacterized conser 95.1 0.01 2.3E-07 54.3 1.6 43 208-253 274-318 (427)
80 PHA02825 LAP/PHD finger-like p 95.0 0.021 4.6E-07 47.8 3.1 48 206-257 6-60 (162)
81 KOG4275 Predicted E3 ubiquitin 94.6 0.0076 1.6E-07 55.0 -0.7 42 208-256 300-342 (350)
82 PF08746 zf-RING-like: RING-li 94.5 0.015 3.3E-07 38.2 0.9 41 211-251 1-43 (43)
83 KOG4739 Uncharacterized protei 94.5 0.012 2.7E-07 52.3 0.5 46 210-258 5-50 (233)
84 PF14447 Prok-RING_4: Prokaryo 94.4 0.022 4.8E-07 39.3 1.5 47 207-258 6-52 (55)
85 KOG1002 Nucleotide excision re 94.0 0.022 4.9E-07 55.8 1.2 51 206-259 534-589 (791)
86 KOG0827 Predicted E3 ubiquitin 93.8 0.0043 9.3E-08 58.5 -4.0 51 208-258 196-247 (465)
87 KOG4185 Predicted E3 ubiquitin 92.9 0.071 1.5E-06 48.8 2.6 47 209-255 4-54 (296)
88 KOG1001 Helicase-like transcri 92.8 0.043 9.4E-07 56.1 1.1 48 209-260 455-504 (674)
89 KOG0298 DEAD box-containing he 92.7 0.031 6.8E-07 59.8 -0.1 47 207-256 1152-1199(1394)
90 KOG2034 Vacuolar sorting prote 92.7 0.05 1.1E-06 56.3 1.3 36 206-242 815-850 (911)
91 PF07800 DUF1644: Protein of u 92.7 0.11 2.5E-06 43.4 3.2 36 208-243 2-47 (162)
92 KOG1940 Zn-finger protein [Gen 92.6 0.052 1.1E-06 49.6 1.1 45 209-253 159-204 (276)
93 PF04641 Rtf2: Rtf2 RING-finge 92.0 0.19 4.1E-06 45.6 4.1 54 206-260 111-165 (260)
94 PF03854 zf-P11: P-11 zinc fin 91.4 0.068 1.5E-06 35.7 0.4 43 211-258 5-48 (50)
95 PF14446 Prok-RING_1: Prokaryo 91.1 0.25 5.4E-06 34.0 2.9 40 207-250 4-44 (54)
96 KOG4367 Predicted Zn-finger pr 91.0 0.17 3.6E-06 48.8 2.7 36 206-244 2-37 (699)
97 KOG3002 Zn finger protein [Gen 90.7 0.14 3.1E-06 47.4 2.0 45 206-257 46-92 (299)
98 PF10272 Tmpp129: Putative tra 90.3 0.26 5.6E-06 46.8 3.3 28 230-257 312-352 (358)
99 PF05290 Baculo_IE-1: Baculovi 90.3 0.21 4.6E-06 40.6 2.3 51 207-260 79-136 (140)
100 KOG0309 Conserved WD40 repeat- 89.9 0.17 3.6E-06 51.8 1.7 40 210-250 1030-1069(1081)
101 KOG0825 PHD Zn-finger protein 88.2 0.49 1.1E-05 48.7 3.6 58 203-260 91-158 (1134)
102 KOG2932 E3 ubiquitin ligase in 88.0 0.24 5.2E-06 45.8 1.2 46 210-259 92-137 (389)
103 KOG1100 Predicted E3 ubiquitin 87.8 0.29 6.3E-06 43.0 1.6 41 211-258 161-202 (207)
104 KOG2817 Predicted E3 ubiquitin 87.3 0.47 1E-05 45.2 2.8 46 206-251 332-380 (394)
105 COG5183 SSM4 Protein involved 87.1 0.44 9.6E-06 49.2 2.6 53 205-258 9-68 (1175)
106 KOG3053 Uncharacterized conser 87.0 0.24 5.3E-06 44.6 0.7 51 206-256 18-82 (293)
107 COG5220 TFB3 Cdk activating ki 86.8 0.3 6.6E-06 43.6 1.2 49 207-255 9-63 (314)
108 KOG3800 Predicted E3 ubiquitin 85.8 0.66 1.4E-05 42.5 2.8 46 210-255 2-50 (300)
109 KOG0269 WD40 repeat-containing 85.3 0.83 1.8E-05 46.9 3.5 45 208-253 779-825 (839)
110 KOG1812 Predicted E3 ubiquitin 85.0 0.34 7.4E-06 46.5 0.7 38 207-244 145-183 (384)
111 KOG1609 Protein involved in mR 84.4 0.61 1.3E-05 42.6 2.0 49 208-256 78-134 (323)
112 KOG1829 Uncharacterized conser 83.8 0.35 7.6E-06 48.5 0.2 46 19-65 379-425 (580)
113 KOG4362 Transcriptional regula 81.9 0.35 7.6E-06 49.2 -0.7 46 208-256 21-69 (684)
114 KOG1812 Predicted E3 ubiquitin 78.0 1 2.2E-05 43.2 1.2 44 208-251 306-351 (384)
115 KOG0802 E3 ubiquitin ligase [P 77.8 1.4 3.1E-05 44.1 2.1 51 206-263 477-527 (543)
116 KOG3899 Uncharacterized conser 76.7 1.3 2.8E-05 40.8 1.3 30 229-258 325-367 (381)
117 KOG4718 Non-SMC (structural ma 75.7 1.4 3E-05 38.7 1.2 44 207-252 180-223 (235)
118 KOG3161 Predicted E3 ubiquitin 70.2 1.4 3E-05 44.6 -0.1 44 207-253 10-54 (861)
119 PF13901 DUF4206: Domain of un 69.5 3.4 7.3E-05 36.0 2.2 41 208-253 152-197 (202)
120 PF07975 C1_4: TFIIH C1-like d 68.8 3.3 7.1E-05 28.2 1.5 42 211-252 2-50 (51)
121 PLN02189 cellulose synthase 67.3 7.4 0.00016 41.8 4.5 50 207-256 33-87 (1040)
122 KOG1815 Predicted E3 ubiquitin 66.6 3.2 7E-05 40.5 1.6 36 207-244 69-104 (444)
123 KOG2066 Vacuolar assembly/sort 65.4 2.8 6E-05 43.4 0.9 44 207-251 783-830 (846)
124 PF14569 zf-UDP: Zinc-binding 65.0 11 0.00024 28.0 3.7 52 207-258 8-64 (80)
125 PF02891 zf-MIZ: MIZ/SP-RING z 64.8 2.7 5.9E-05 28.3 0.5 43 209-254 3-50 (50)
126 smart00249 PHD PHD zinc finger 63.9 4.5 9.9E-05 25.3 1.5 31 210-240 1-31 (47)
127 KOG3579 Predicted E3 ubiquitin 62.3 9.9 0.00021 35.0 3.7 41 206-246 266-307 (352)
128 PF10571 UPF0547: Uncharacteri 62.0 3.9 8.5E-05 23.8 0.8 22 210-233 2-24 (26)
129 KOG2068 MOT2 transcription fac 61.1 7.2 0.00016 36.5 2.8 56 208-263 249-305 (327)
130 PLN02436 cellulose synthase A 61.1 12 0.00025 40.5 4.6 50 207-256 35-89 (1094)
131 KOG0824 Predicted E3 ubiquitin 60.6 3 6.6E-05 38.5 0.2 50 206-257 103-152 (324)
132 PF06844 DUF1244: Protein of u 60.2 5.2 0.00011 28.7 1.2 11 233-243 12-22 (68)
133 PF01363 FYVE: FYVE zinc finge 59.6 5.3 0.00011 28.2 1.3 36 207-242 8-44 (69)
134 PF00628 PHD: PHD-finger; Int 59.3 5.5 0.00012 26.2 1.3 43 211-253 2-50 (51)
135 PF11241 DUF3043: Protein of u 57.8 13 0.00028 31.7 3.5 18 20-37 61-80 (170)
136 TIGR00622 ssl1 transcription f 56.4 15 0.00033 29.1 3.5 44 209-252 56-110 (112)
137 PF07123 PsbW: Photosystem II 56.1 9.9 0.00021 31.2 2.4 26 56-81 100-125 (138)
138 KOG3039 Uncharacterized conser 54.2 11 0.00023 34.1 2.5 35 206-243 41-75 (303)
139 KOG3113 Uncharacterized conser 52.9 11 0.00023 34.2 2.4 58 207-266 110-168 (293)
140 KOG2807 RNA polymerase II tran 52.8 10 0.00022 35.6 2.3 44 210-253 332-375 (378)
141 COG5416 Uncharacterized integr 51.7 44 0.00094 25.8 5.2 26 40-65 31-56 (98)
142 smart00132 LIM Zinc-binding do 51.0 19 0.00042 21.5 2.7 36 211-255 2-37 (39)
143 KOG3005 GIY-YIG type nuclease 48.9 9.2 0.0002 34.9 1.3 48 208-255 182-242 (276)
144 KOG4218 Nuclear hormone recept 47.7 6.9 0.00015 37.0 0.3 48 206-254 13-76 (475)
145 PLN00077 photosystem II reacti 46.7 14 0.0003 29.6 1.8 26 56-81 89-114 (128)
146 PF07191 zinc-ribbons_6: zinc- 46.1 2 4.4E-05 31.2 -2.7 40 209-256 2-41 (70)
147 KOG3842 Adaptor protein Pellin 46.0 22 0.00048 33.3 3.3 51 207-257 340-415 (429)
148 PF13717 zinc_ribbon_4: zinc-r 45.5 11 0.00023 23.6 0.8 25 210-234 4-36 (36)
149 PLN02915 cellulose synthase A 45.4 32 0.0007 37.1 4.9 50 207-256 14-68 (1044)
150 PF05605 zf-Di19: Drought indu 45.1 7.1 0.00015 26.4 0.0 14 208-221 2-15 (54)
151 PF04710 Pellino: Pellino; In 44.7 7.3 0.00016 37.4 0.0 45 208-255 277-338 (416)
152 smart00064 FYVE Protein presen 44.5 18 0.0004 25.2 2.1 36 208-243 10-46 (68)
153 KOG3726 Uncharacterized conser 42.9 10 0.00023 38.7 0.8 61 209-272 655-716 (717)
154 COG5109 Uncharacterized conser 42.8 17 0.00036 34.1 2.0 46 206-251 334-382 (396)
155 PRK12585 putative monovalent c 41.4 38 0.00082 29.5 3.8 22 25-46 34-56 (197)
156 PLN02400 cellulose synthase 41.1 31 0.00068 37.4 4.0 50 207-256 35-89 (1085)
157 cd00065 FYVE FYVE domain; Zinc 40.6 20 0.00043 24.0 1.7 34 209-242 3-37 (57)
158 PF10083 DUF2321: Uncharacteri 40.2 18 0.00038 30.4 1.6 53 212-267 8-61 (158)
159 PLN02638 cellulose synthase A 39.0 44 0.00096 36.3 4.7 50 207-256 16-70 (1079)
160 PLN00092 photosystem I reactio 38.7 17 0.00037 29.4 1.2 26 56-81 99-124 (137)
161 COG4847 Uncharacterized protei 37.8 33 0.00072 26.4 2.6 36 208-244 6-41 (103)
162 PF05814 DUF843: Baculovirus p 37.4 1.1E+02 0.0024 23.0 5.3 33 48-80 13-45 (83)
163 PF13719 zinc_ribbon_5: zinc-r 37.0 19 0.0004 22.5 1.0 25 210-234 4-36 (37)
164 PLN00082 photosystem II reacti 35.9 32 0.0007 24.5 2.1 24 56-79 28-51 (67)
165 PF06906 DUF1272: Protein of u 35.2 49 0.0011 23.0 2.9 44 210-256 7-52 (57)
166 PF13832 zf-HC5HC2H_2: PHD-zin 34.7 32 0.0007 26.4 2.3 31 208-240 55-87 (110)
167 PF11119 DUF2633: Protein of u 34.3 87 0.0019 22.0 4.0 17 36-52 9-25 (59)
168 PF04216 FdhE: Protein involve 34.1 5.6 0.00012 36.5 -2.5 48 207-254 171-220 (290)
169 KOG4430 Topoisomerase I-bindin 33.9 16 0.00036 36.5 0.6 60 205-264 257-317 (553)
170 COG3492 Uncharacterized protei 33.8 19 0.00041 27.5 0.7 12 233-244 43-54 (104)
171 PF15052 TMEM169: TMEM169 prot 33.4 52 0.0011 26.7 3.2 33 56-88 61-93 (133)
172 PF00412 LIM: LIM domain; Int 32.7 47 0.001 22.0 2.6 40 211-259 1-40 (58)
173 PF10497 zf-4CXXC_R1: Zinc-fin 31.5 44 0.00096 26.0 2.5 25 230-254 37-70 (105)
174 cd00350 rubredoxin_like Rubred 31.1 28 0.00061 21.1 1.1 10 244-253 16-25 (33)
175 KOG2113 Predicted RNA binding 29.9 38 0.00081 31.8 2.1 44 207-255 342-386 (394)
176 PF05715 zf-piccolo: Piccolo Z 29.3 37 0.00079 23.9 1.5 16 245-260 2-17 (61)
177 PLN02195 cellulose synthase A 29.0 72 0.0016 34.4 4.3 49 208-256 6-59 (977)
178 PF07219 HemY_N: HemY protein 29.0 2E+02 0.0044 22.0 6.0 42 31-79 9-50 (108)
179 PLN02248 cellulose synthase-li 28.7 46 0.001 36.3 2.8 32 228-259 149-180 (1135)
180 PF14311 DUF4379: Domain of un 27.6 34 0.00075 23.0 1.2 22 229-251 34-55 (55)
181 PF07649 C1_3: C1-like domain; 27.4 44 0.00095 19.6 1.5 29 210-238 2-30 (30)
182 PRK11088 rrmA 23S rRNA methylt 27.3 41 0.00089 30.2 2.0 25 209-233 3-27 (272)
183 PF07172 GRP: Glycine rich pro 27.1 50 0.0011 25.3 2.1 10 38-47 3-12 (95)
184 KOG1074 Transcriptional repres 27.0 41 0.00089 35.5 2.1 14 206-219 603-616 (958)
185 KOG2041 WD40 repeat protein [G 26.8 55 0.0012 34.2 2.8 47 206-256 1129-1185(1189)
186 PHA02688 ORF059 IMV protein VP 26.5 80 0.0017 29.6 3.7 16 58-73 306-321 (323)
187 PF15128 T_cell_tran_alt: T-ce 26.4 1.1E+02 0.0023 23.2 3.6 25 48-81 27-51 (92)
188 KOG3799 Rab3 effector RIM1 and 26.1 15 0.00032 30.2 -1.0 49 206-254 63-116 (169)
189 KOG2071 mRNA cleavage and poly 25.9 34 0.00074 34.5 1.2 37 206-242 511-557 (579)
190 PRK14584 hmsS hemin storage sy 25.9 2E+02 0.0042 24.2 5.5 50 40-89 30-90 (153)
191 PHA01815 hypothetical protein 25.5 1.9E+02 0.0041 19.2 4.3 9 39-47 13-21 (55)
192 PF04423 Rad50_zn_hook: Rad50 25.5 22 0.00047 24.0 -0.2 12 247-258 22-33 (54)
193 PF08999 SP_C-Propep: Surfacta 25.3 96 0.0021 23.2 3.2 23 30-52 27-49 (93)
194 KOG1815 Predicted E3 ubiquitin 25.1 25 0.00055 34.3 0.2 39 206-244 224-267 (444)
195 smart00647 IBR In Between Ring 24.6 22 0.00047 24.1 -0.3 18 224-241 40-58 (64)
196 PF06667 PspB: Phage shock pro 24.6 1.2E+02 0.0027 22.2 3.7 14 39-52 3-16 (75)
197 PF12113 SVM_signal: SVM prote 24.5 51 0.0011 20.4 1.4 18 40-57 13-30 (33)
198 COG3813 Uncharacterized protei 24.5 43 0.00094 24.5 1.2 24 230-255 28-51 (84)
199 KOG2979 Protein involved in DN 24.4 40 0.00087 30.6 1.3 43 207-251 175-219 (262)
200 KOG1729 FYVE finger containing 24.3 15 0.00032 34.0 -1.5 40 207-246 213-252 (288)
201 PF03213 Pox_P35: Poxvirus P35 24.2 93 0.002 29.2 3.6 15 58-72 308-322 (325)
202 PF10852 DUF2651: Protein of u 24.0 1.4E+02 0.0031 22.3 3.9 28 47-74 38-66 (82)
203 KOG4451 Uncharacterized conser 23.6 48 0.001 29.6 1.6 25 234-258 252-276 (286)
204 PF13771 zf-HC5HC2H: PHD-like 23.3 52 0.0011 24.1 1.6 31 208-240 36-68 (90)
205 PF06750 DiS_P_DiS: Bacterial 23.0 49 0.0011 25.1 1.4 37 209-257 34-70 (92)
206 PRK09458 pspB phage shock prot 22.6 1.1E+02 0.0024 22.5 3.1 14 39-52 3-16 (75)
207 PF09943 DUF2175: Uncharacteri 22.5 69 0.0015 25.0 2.1 33 210-243 4-36 (101)
208 PF06796 NapE: Periplasmic nit 22.5 86 0.0019 21.8 2.4 14 39-52 19-32 (56)
209 KOG4185 Predicted E3 ubiquitin 22.4 15 0.00033 33.4 -1.9 47 208-254 207-265 (296)
210 KOG1245 Chromatin remodeling c 22.3 30 0.00064 38.8 0.0 50 206-255 1106-1159(1404)
211 PF10146 zf-C4H2: Zinc finger- 21.9 61 0.0013 28.9 2.0 26 234-259 197-222 (230)
212 PRK03564 formate dehydrogenase 21.6 40 0.00087 31.5 0.8 42 207-253 186-234 (309)
213 PF11023 DUF2614: Protein of u 21.5 30 0.00064 27.5 -0.1 28 242-270 82-109 (114)
214 COG3071 HemY Uncharacterized e 21.0 3.1E+02 0.0067 26.6 6.5 45 30-81 33-77 (400)
215 TIGR02972 TMAO_torE trimethyla 21.0 1E+02 0.0022 20.6 2.4 14 39-52 11-24 (47)
216 PF11125 DUF2830: Protein of u 20.5 2.8E+02 0.0061 18.7 4.7 21 56-76 29-49 (54)
217 PF14169 YdjO: Cold-inducible 20.2 50 0.0011 23.2 0.8 15 245-259 39-53 (59)
No 1
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=5.5e-16 Score=143.45 Aligned_cols=82 Identities=38% Similarity=0.799 Sum_probs=67.4
Q ss_pred CCCHHHHhhCCceeeeccCCCCCCCcccCCCCCChhhhhhhcccccCCCCCCCCccccccccccccCCeeEEeCCCCccC
Q 024056 155 SMSEEEINTLPVHKYKVSGSQSGASSMQLGSSSSPAEKKLETSISVGNLKTEDELTCTVCLEQVNVGEIVRSLPCLHQFH 234 (273)
Q Consensus 155 ~ls~~~I~~Lp~~~~k~~~~~~g~~~~~~~ss~s~~~~~~~~~~~~~~~~~~~~~~C~ICle~~~~~~~v~~lpC~H~FH 234 (273)
.+.+..+.++|..+|+..... ....+|+||+|+|..||.++.|||+|.||
T Consensus 206 r~~k~~l~~~p~~~f~~~~~~------------------------------~~~~~CaIClEdY~~GdklRiLPC~H~FH 255 (348)
T KOG4628|consen 206 RLIKRLLKKLPVRTFTKGDDE------------------------------DATDTCAICLEDYEKGDKLRILPCSHKFH 255 (348)
T ss_pred hhHHHHHhhCCcEEecccccc------------------------------CCCceEEEeecccccCCeeeEecCCCchh
Confidence 467788999999999755431 11158999999999999999999999999
Q ss_pred hhhHHHHHhcCCC-cccccccccCCCCCCcccc
Q 024056 235 ANCIDPWLRQQGT-CPVCKLRAGSGWHETRQVE 266 (273)
Q Consensus 235 ~~CI~~WL~~~~~-CP~CR~~v~~~~~~~~~~~ 266 (273)
..||++||.++.+ ||+||..+..........|
T Consensus 256 ~~CIDpWL~~~r~~CPvCK~di~~~~~~~~~~e 288 (348)
T KOG4628|consen 256 VNCIDPWLTQTRTFCPVCKRDIRTDSGSEPVSE 288 (348)
T ss_pred hccchhhHhhcCccCCCCCCcCCCCCCCCCccC
Confidence 9999999998755 9999998877766655554
No 2
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.53 E-value=2.9e-15 Score=99.32 Aligned_cols=43 Identities=49% Similarity=1.214 Sum_probs=40.4
Q ss_pred cccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCccccc
Q 024056 210 TCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCK 252 (273)
Q Consensus 210 ~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR 252 (273)
+|+||++.+..++.+..++|||.||.+||.+|++++.+||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 6999999999889999999999999999999999999999997
No 3
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.27 E-value=3.1e-12 Score=94.08 Aligned_cols=45 Identities=38% Similarity=0.902 Sum_probs=35.9
Q ss_pred CccccccccccccC----------CeeEEeCCCCccChhhHHHHHhcCCCccccc
Q 024056 208 ELTCTVCLEQVNVG----------EIVRSLPCLHQFHANCIDPWLRQQGTCPVCK 252 (273)
Q Consensus 208 ~~~C~ICle~~~~~----------~~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR 252 (273)
++.|+||++.+... -.+...+|||.||..||.+||+.+.+||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 44599999999322 2445567999999999999999999999998
No 4
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.23 E-value=8e-12 Score=111.09 Aligned_cols=51 Identities=37% Similarity=0.769 Sum_probs=41.8
Q ss_pred CCccccccccccccCCe-----eEEeCCCCccChhhHHHHHhcCCCcccccccccC
Q 024056 207 DELTCTVCLEQVNVGEI-----VRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGS 257 (273)
Q Consensus 207 ~~~~C~ICle~~~~~~~-----v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v~~ 257 (273)
++.+|+||++.+..++. ...++|+|.||..||.+|++.+.+||+||..+..
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~~ 228 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFIS 228 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEeeE
Confidence 45689999999875431 2334699999999999999999999999998753
No 5
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=2.4e-11 Score=109.08 Aligned_cols=53 Identities=28% Similarity=0.669 Sum_probs=46.6
Q ss_pred CCCCCccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCcccccccccCCC
Q 024056 204 KTEDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSGW 259 (273)
Q Consensus 204 ~~~~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v~~~~ 259 (273)
..+...+|.+||+....+ ..+||||+||+.||..|...+..||+||.......
T Consensus 235 i~~a~~kC~LCLe~~~~p---SaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~psk 287 (293)
T KOG0317|consen 235 IPEATRKCSLCLENRSNP---SATPCGHIFCWSCILEWCSEKAECPLCREKFQPSK 287 (293)
T ss_pred CCCCCCceEEEecCCCCC---CcCcCcchHHHHHHHHHHccccCCCcccccCCCcc
Confidence 335678999999998877 78999999999999999999999999999886654
No 6
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=2e-11 Score=110.00 Aligned_cols=50 Identities=34% Similarity=0.935 Sum_probs=45.8
Q ss_pred CccccccccccccCCeeEEeCCCCccChhhHHHHHhc-CCCcccccccccC
Q 024056 208 ELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ-QGTCPVCKLRAGS 257 (273)
Q Consensus 208 ~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~-~~~CP~CR~~v~~ 257 (273)
..+|+|||++|..+|.++.+||.|.||..|+++|+.. +..||+||+.++.
T Consensus 323 GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 323 GVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 4579999999999999999999999999999999984 6689999998874
No 7
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.14 E-value=3e-11 Score=103.60 Aligned_cols=52 Identities=31% Similarity=0.666 Sum_probs=42.5
Q ss_pred CCCCccccccccccccCCeeEEeCCCCccChhhHHHHHhc----------------CCCcccccccccCCC
Q 024056 205 TEDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ----------------QGTCPVCKLRAGSGW 259 (273)
Q Consensus 205 ~~~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~----------------~~~CP~CR~~v~~~~ 259 (273)
..++.+|+||++.+..+ ..++|||.||+.||.+|+.. ...||+||..+....
T Consensus 15 ~~~~~~CpICld~~~dP---VvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~ 82 (193)
T PLN03208 15 SGGDFDCNICLDQVRDP---VVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEAT 82 (193)
T ss_pred CCCccCCccCCCcCCCc---EEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhc
Confidence 34678999999998766 66889999999999999852 247999999886543
No 8
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=3.6e-11 Score=111.00 Aligned_cols=57 Identities=32% Similarity=0.773 Sum_probs=45.8
Q ss_pred CCCccccccccccccCC----------eeEEeCCCCccChhhHHHHHhcCCCccccccc-ccCCCCCC
Q 024056 206 EDELTCTVCLEQVNVGE----------IVRSLPCLHQFHANCIDPWLRQQGTCPVCKLR-AGSGWHET 262 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~----------~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~-v~~~~~~~ 262 (273)
.++..|.||++++-.++ ...++||||+||-+|+..|++++.+||+||.+ +.+..++.
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~ifd~~~~~ 352 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVIFDQSSPT 352 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCccccccCCCC
Confidence 56779999999943332 23679999999999999999999999999999 44554433
No 9
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.01 E-value=1.7e-10 Score=78.39 Aligned_cols=46 Identities=30% Similarity=0.795 Sum_probs=39.2
Q ss_pred CccccccccccccCCeeEEeCCCCc-cChhhHHHHHhcCCCccccccccc
Q 024056 208 ELTCTVCLEQVNVGEIVRSLPCLHQ-FHANCIDPWLRQQGTCPVCKLRAG 256 (273)
Q Consensus 208 ~~~C~ICle~~~~~~~v~~lpC~H~-FH~~CI~~WL~~~~~CP~CR~~v~ 256 (273)
+..|.||++.... +..+||||. ||..|+.+|++....||+||+++.
T Consensus 2 ~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRD---VVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSS---EEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred cCCCccCCccCCc---eEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 4579999999654 478899999 999999999999999999999875
No 10
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.00 E-value=2.6e-10 Score=73.56 Aligned_cols=39 Identities=38% Similarity=1.009 Sum_probs=33.7
Q ss_pred ccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCcccc
Q 024056 211 CTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVC 251 (273)
Q Consensus 211 C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~~CP~C 251 (273)
|+||++.+.. .+..++|||.||.+||.+|++.+.+||.|
T Consensus 1 C~iC~~~~~~--~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD--PVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS--EEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccC--cCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 8999999884 56788999999999999999999999998
No 11
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=3.3e-10 Score=99.07 Aligned_cols=52 Identities=27% Similarity=0.594 Sum_probs=43.2
Q ss_pred CCCccccccccccccCCeeEEeCCCCccChhhHHHHHhcC---CCcccccccccCCCC
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQ---GTCPVCKLRAGSGWH 260 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~---~~CP~CR~~v~~~~~ 260 (273)
....+|.|||+.-+.+ +.+.|||.||+.||.+||..+ +.||+||..+.....
T Consensus 45 ~~~FdCNICLd~akdP---VvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~v 99 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDP---VVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTV 99 (230)
T ss_pred CCceeeeeeccccCCC---EEeecccceehHHHHHHHhhcCCCeeCCccccccccceE
Confidence 4567899999998866 677899999999999999863 458999998875543
No 12
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=3.9e-10 Score=94.83 Aligned_cols=54 Identities=28% Similarity=0.643 Sum_probs=45.2
Q ss_pred CCCCCccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCcccccccccCC
Q 024056 204 KTEDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSG 258 (273)
Q Consensus 204 ~~~~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v~~~ 258 (273)
..+....|+|||+.+.+... ..+.|||+||..||...++....||+|++++..+
T Consensus 127 ~~~~~~~CPiCl~~~sek~~-vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k 180 (187)
T KOG0320|consen 127 RKEGTYKCPICLDSVSEKVP-VSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHK 180 (187)
T ss_pred ccccccCCCceecchhhccc-cccccchhHHHHHHHHHHHhCCCCCCcccccchh
Confidence 33556899999999985432 4578999999999999999999999999887654
No 13
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.95 E-value=6.2e-10 Score=72.34 Aligned_cols=44 Identities=45% Similarity=1.078 Sum_probs=36.6
Q ss_pred cccccccccccCCeeEEeCCCCccChhhHHHHHhc-CCCcccccccc
Q 024056 210 TCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ-QGTCPVCKLRA 255 (273)
Q Consensus 210 ~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~-~~~CP~CR~~v 255 (273)
+|+||++.+. +.+...+|||.||..|+..|++. +..||.||..+
T Consensus 1 ~C~iC~~~~~--~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFR--EPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhh--CceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 4999999983 34455569999999999999998 77899998753
No 14
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.85 E-value=1.5e-09 Score=71.31 Aligned_cols=38 Identities=34% Similarity=0.900 Sum_probs=30.2
Q ss_pred ccccccccccCCeeEEeCCCCccChhhHHHHHhcC----CCcccc
Q 024056 211 CTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQ----GTCPVC 251 (273)
Q Consensus 211 C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~----~~CP~C 251 (273)
|+||++.|..+ ..++|||.||..||.+|.+.. ..||.|
T Consensus 1 CpiC~~~~~~P---v~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDP---VSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSE---EE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCc---cccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999988 789999999999999999764 359987
No 15
>PHA02926 zinc finger-like protein; Provisional
Probab=98.82 E-value=1.5e-09 Score=94.55 Aligned_cols=51 Identities=33% Similarity=0.792 Sum_probs=38.5
Q ss_pred CCCccccccccccccC----C-eeEEe-CCCCccChhhHHHHHhcC------CCccccccccc
Q 024056 206 EDELTCTVCLEQVNVG----E-IVRSL-PCLHQFHANCIDPWLRQQ------GTCPVCKLRAG 256 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~----~-~v~~l-pC~H~FH~~CI~~WL~~~------~~CP~CR~~v~ 256 (273)
+.+.+|+||+|..... + .-..| +|+|.||..||..|.+.+ .+||+||....
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 4567899999987432 1 12345 499999999999999753 35999999765
No 16
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=2e-09 Score=106.86 Aligned_cols=53 Identities=34% Similarity=0.832 Sum_probs=45.5
Q ss_pred CCCccccccccccccCCe--eEEeCCCCccChhhHHHHHhcCCCcccccccccCC
Q 024056 206 EDELTCTVCLEQVNVGEI--VRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSG 258 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~--v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v~~~ 258 (273)
..+..|+||+|.+..++. ..++||+|+||..|+..|++++.+||.||..+...
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~~~~ 343 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVLYDY 343 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhhhcc
Confidence 347789999999997544 57899999999999999999999999999955433
No 17
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.78 E-value=6.3e-09 Score=73.49 Aligned_cols=46 Identities=26% Similarity=0.463 Sum_probs=41.1
Q ss_pred ccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCcccccccccC
Q 024056 209 LTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGS 257 (273)
Q Consensus 209 ~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v~~ 257 (273)
..|+||.+.+..+ ..++|||+|+..||.+|++.+.+||.|+..+..
T Consensus 2 ~~Cpi~~~~~~~P---v~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~ 47 (63)
T smart00504 2 FLCPISLEVMKDP---VILPSGQTYERRAIEKWLLSHGTDPVTGQPLTH 47 (63)
T ss_pred cCCcCCCCcCCCC---EECCCCCEEeHHHHHHHHHHCCCCCCCcCCCCh
Confidence 4699999999876 678999999999999999999999999987743
No 18
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.72 E-value=6.4e-09 Score=67.43 Aligned_cols=39 Identities=41% Similarity=1.038 Sum_probs=33.8
Q ss_pred ccccccccccCCeeEEeCCCCccChhhHHHHHh--cCCCcccc
Q 024056 211 CTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLR--QQGTCPVC 251 (273)
Q Consensus 211 C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~--~~~~CP~C 251 (273)
|+||++.+..+ +..++|||.||..||.+|++ ....||.|
T Consensus 1 C~iC~~~~~~~--~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDP--VILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSE--EEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCC--CEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 89999998865 35788999999999999999 45679988
No 19
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.72 E-value=9e-09 Score=77.16 Aligned_cols=50 Identities=28% Similarity=0.696 Sum_probs=38.1
Q ss_pred CCccccccccccccC--------C--eeEEeCCCCccChhhHHHHHhc---CCCccccccccc
Q 024056 207 DELTCTVCLEQVNVG--------E--IVRSLPCLHQFHANCIDPWLRQ---QGTCPVCKLRAG 256 (273)
Q Consensus 207 ~~~~C~ICle~~~~~--------~--~v~~lpC~H~FH~~CI~~WL~~---~~~CP~CR~~v~ 256 (273)
+++.|.||...|... + .+..-.|+|.||.+||.+|+.+ +.+||+||+...
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 366899999998632 2 2223349999999999999986 468999998754
No 20
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.71 E-value=1e-08 Score=67.91 Aligned_cols=44 Identities=25% Similarity=0.677 Sum_probs=37.8
Q ss_pred cccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCcccccc
Q 024056 210 TCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKL 253 (273)
Q Consensus 210 ~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~ 253 (273)
.|+||.+.|........++|||+||..|+..+......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 49999999955556778889999999999999866778999985
No 21
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.68 E-value=1.7e-08 Score=63.18 Aligned_cols=38 Identities=45% Similarity=1.156 Sum_probs=32.3
Q ss_pred ccccccccccCCeeEEeCCCCccChhhHHHHHh-cCCCcccc
Q 024056 211 CTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLR-QQGTCPVC 251 (273)
Q Consensus 211 C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~-~~~~CP~C 251 (273)
|+||++... ....++|+|.||..|+..|++ .+..||.|
T Consensus 1 C~iC~~~~~---~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELK---DPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCC---CcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 789999843 347789999999999999998 56679987
No 22
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.65 E-value=1.5e-08 Score=96.27 Aligned_cols=49 Identities=29% Similarity=0.687 Sum_probs=43.4
Q ss_pred CCCccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCcccccccccC
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGS 257 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v~~ 257 (273)
+....|+||++.+..+ ..++|||.||..||..|+.....||+||..+..
T Consensus 24 e~~l~C~IC~d~~~~P---vitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 24 DTSLRCHICKDFFDVP---VLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred ccccCCCcCchhhhCc---cCCCCCCchhHHHHHHHHhCCCCCCCCCCcccc
Confidence 4677999999999866 568999999999999999998899999998764
No 23
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.45 E-value=1.3e-07 Score=69.56 Aligned_cols=47 Identities=32% Similarity=0.683 Sum_probs=34.4
Q ss_pred cccccccccccCC-eeEEeC-CCCccChhhHHHHHhcCCCccccccccc
Q 024056 210 TCTVCLEQVNVGE-IVRSLP-CLHQFHANCIDPWLRQQGTCPVCKLRAG 256 (273)
Q Consensus 210 ~C~ICle~~~~~~-~v~~lp-C~H~FH~~CI~~WL~~~~~CP~CR~~v~ 256 (273)
.|+-|......++ ...... |.|.||.+||.+||..+..||+||+...
T Consensus 33 ~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~ 81 (88)
T COG5194 33 TCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWV 81 (88)
T ss_pred cCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeE
Confidence 3444444444333 333444 9999999999999999999999998754
No 24
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=8.6e-08 Score=85.43 Aligned_cols=51 Identities=27% Similarity=0.695 Sum_probs=43.5
Q ss_pred CCCccccccccccccCCeeEEeCCCCccChhhHHH-HHhcCCC-cccccccccCCC
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDP-WLRQQGT-CPVCKLRAGSGW 259 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~-WL~~~~~-CP~CR~~v~~~~ 259 (273)
..+.+|.||++....+ ..++|||+||..||-. |=+++.. ||+||+.+..+.
T Consensus 213 ~~d~kC~lC~e~~~~p---s~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~ 265 (271)
T COG5574 213 LADYKCFLCLEEPEVP---SCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK 265 (271)
T ss_pred ccccceeeeecccCCc---ccccccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence 4577899999998766 7899999999999999 9777766 999999876554
No 25
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=7.6e-08 Score=85.88 Aligned_cols=51 Identities=35% Similarity=0.775 Sum_probs=42.0
Q ss_pred CCccccccccccccCC-------eeEEeCCCCccChhhHHHHH--hcCCCcccccccccC
Q 024056 207 DELTCTVCLEQVNVGE-------IVRSLPCLHQFHANCIDPWL--RQQGTCPVCKLRAGS 257 (273)
Q Consensus 207 ~~~~C~ICle~~~~~~-------~v~~lpC~H~FH~~CI~~WL--~~~~~CP~CR~~v~~ 257 (273)
++..|+||-..+...+ ...+|.|+|+||..||+-|- .++.+||.||.++..
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl 282 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDL 282 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhH
Confidence 4568999988886554 56789999999999999995 457799999887753
No 26
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=2.5e-07 Score=89.17 Aligned_cols=50 Identities=26% Similarity=0.578 Sum_probs=40.7
Q ss_pred CccccccccccccCCeeEEeCCCCccChhhHHHHHhc-----CCCcccccccccCCCC
Q 024056 208 ELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ-----QGTCPVCKLRAGSGWH 260 (273)
Q Consensus 208 ~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~-----~~~CP~CR~~v~~~~~ 260 (273)
+..|+|||+....+ ..+.|||+||..||-+.+.. ...||+||..+..+..
T Consensus 186 ~~~CPICL~~~~~p---~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl 240 (513)
T KOG2164|consen 186 DMQCPICLEPPSVP---VRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDL 240 (513)
T ss_pred CCcCCcccCCCCcc---cccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccce
Confidence 67899999998766 56669999999999997654 3469999998876443
No 27
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.31 E-value=1.5e-07 Score=86.46 Aligned_cols=50 Identities=32% Similarity=0.759 Sum_probs=45.1
Q ss_pred CCCccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCcccccccccCC
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSG 258 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v~~~ 258 (273)
++...|.||.+.|..+ ..+||+|.||.-||+..|..+..||.|+..+.+.
T Consensus 21 D~lLRC~IC~eyf~ip---~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es 70 (442)
T KOG0287|consen 21 DDLLRCGICFEYFNIP---MITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTES 70 (442)
T ss_pred HHHHHHhHHHHHhcCc---eeccccchHHHHHHHHHhccCCCCCceecccchh
Confidence 4567899999999988 8899999999999999999999999999877643
No 28
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.28 E-value=4.2e-07 Score=66.62 Aligned_cols=49 Identities=29% Similarity=0.499 Sum_probs=39.1
Q ss_pred CCccccccccccccCCeeEEeCCCCccChhhHHHHHhc-CCCcccccccccCC
Q 024056 207 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ-QGTCPVCKLRAGSG 258 (273)
Q Consensus 207 ~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~-~~~CP~CR~~v~~~ 258 (273)
+...|+||.+.+..+ ..+||||.|...||.+|++. +.+||.|+..+...
T Consensus 3 ~~f~CpIt~~lM~dP---Vi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~ 52 (73)
T PF04564_consen 3 DEFLCPITGELMRDP---VILPSGHTYERSAIERWLEQNGGTDPFTRQPLSES 52 (73)
T ss_dssp GGGB-TTTSSB-SSE---EEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGG
T ss_pred cccCCcCcCcHhhCc---eeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcc
Confidence 467899999999977 68899999999999999999 88999999887654
No 29
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.25 E-value=7.6e-07 Score=58.69 Aligned_cols=38 Identities=29% Similarity=0.725 Sum_probs=22.3
Q ss_pred cccccccccc-CCeeEEeCCCCccChhhHHHHHhcC----CCcc
Q 024056 211 CTVCLEQVNV-GEIVRSLPCLHQFHANCIDPWLRQQ----GTCP 249 (273)
Q Consensus 211 C~ICle~~~~-~~~v~~lpC~H~FH~~CI~~WL~~~----~~CP 249 (273)
|+||.+ +.. ...-..|+|||.|+.+||.+|++++ ..||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 754 3345779999999999999999854 2476
No 30
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=5.7e-07 Score=69.28 Aligned_cols=48 Identities=27% Similarity=0.697 Sum_probs=37.6
Q ss_pred CCcccccccccc-------------ccCCeeEEeC-CCCccChhhHHHHHhcCCCccccccc
Q 024056 207 DELTCTVCLEQV-------------NVGEIVRSLP-CLHQFHANCIDPWLRQQGTCPVCKLR 254 (273)
Q Consensus 207 ~~~~C~ICle~~-------------~~~~~v~~lp-C~H~FH~~CI~~WL~~~~~CP~CR~~ 254 (273)
..+.|+||...+ ..+|...... |.|.||..||.+||++++.||+|.+.
T Consensus 45 ~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~e 106 (114)
T KOG2930|consen 45 VVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKE 106 (114)
T ss_pred eechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcc
Confidence 456799985543 2334555666 99999999999999999999999654
No 31
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=1.8e-07 Score=86.39 Aligned_cols=61 Identities=28% Similarity=0.574 Sum_probs=51.6
Q ss_pred CCCccccccccccccCCeeEEeC-CCCccChhhHHHHHhc-CCCcccccccccCCCCCCccccccc
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLP-CLHQFHANCIDPWLRQ-QGTCPVCKLRAGSGWHETRQVEMDA 269 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lp-C~H~FH~~CI~~WL~~-~~~CP~CR~~v~~~~~~~~~~~~~~ 269 (273)
.-+..|+|||+.++.. ..++ |+|-||.+||..-++. +++||.||+.+..+.+-..++++++
T Consensus 41 ~~~v~c~icl~llk~t---mttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fda 103 (381)
T KOG0311|consen 41 DIQVICPICLSLLKKT---MTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDA 103 (381)
T ss_pred hhhhccHHHHHHHHhh---cccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHH
Confidence 3467899999999865 5566 9999999999998876 6789999999999988888777765
No 32
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=98.18 E-value=1.2e-06 Score=83.09 Aligned_cols=89 Identities=29% Similarity=0.551 Sum_probs=57.4
Q ss_pred hcCCCCCCCCCCHHHHhhCCceeeeccCCCCCCCcccCCCCCChhhhhhhcccccCCCCCCCCccccccccccccCC-ee
Q 024056 146 DADNVPTAASMSEEEINTLPVHKYKVSGSQSGASSMQLGSSSSPAEKKLETSISVGNLKTEDELTCTVCLEQVNVGE-IV 224 (273)
Q Consensus 146 ~e~~~~~~~~ls~~~I~~Lp~~~~k~~~~~~g~~~~~~~ss~s~~~~~~~~~~~~~~~~~~~~~~C~ICle~~~~~~-~v 224 (273)
.+-+|.....+.++.-.-+-+.......+.++++.. .....+..+|+||||.+...- .+
T Consensus 133 ~efNGk~Fn~le~e~Chll~V~~ve~~~s~d~as~~--------------------~~~~tELPTCpVCLERMD~s~~gi 192 (493)
T KOG0804|consen 133 EEFNGKQFNSLEPEVCHLLYVDRVEVTESEDGASEP--------------------PTGLTELPTCPVCLERMDSSTTGI 192 (493)
T ss_pred HHcCCCcCCCCCccceeEEEEEEEEEEecccCCCCC--------------------CCCcccCCCcchhHhhcCccccce
Confidence 445566555666665444444444444443333321 011135679999999998543 34
Q ss_pred EEeCCCCccChhhHHHHHhcCCCccccccccc
Q 024056 225 RSLPCLHQFHANCIDPWLRQQGTCPVCKLRAG 256 (273)
Q Consensus 225 ~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v~ 256 (273)
....|.|.||..|+..| ...+||+||.-..
T Consensus 193 ~t~~c~Hsfh~~cl~~w--~~~scpvcR~~q~ 222 (493)
T KOG0804|consen 193 LTILCNHSFHCSCLMKW--WDSSCPVCRYCQS 222 (493)
T ss_pred eeeecccccchHHHhhc--ccCcChhhhhhcC
Confidence 45669999999999999 6778999998655
No 33
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.17 E-value=1.4e-06 Score=59.02 Aligned_cols=42 Identities=26% Similarity=0.801 Sum_probs=32.1
Q ss_pred cccccccccccCCeeEEeCCC-----CccChhhHHHHHhcC--CCccccc
Q 024056 210 TCTVCLEQVNVGEIVRSLPCL-----HQFHANCIDPWLRQQ--GTCPVCK 252 (273)
Q Consensus 210 ~C~ICle~~~~~~~v~~lpC~-----H~FH~~CI~~WL~~~--~~CP~CR 252 (273)
.|-||++. ..++.....||. |++|..|+.+|+..+ .+||+|+
T Consensus 1 ~CrIC~~~-~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDE-GDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCC-CCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 38999993 333444578874 899999999999654 4899995
No 34
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.14 E-value=1.4e-06 Score=80.05 Aligned_cols=52 Identities=19% Similarity=0.460 Sum_probs=38.0
Q ss_pred Cccccccccc-cccCCe-eEEeCCCCccChhhHHHHHh-cCCCcccccccccCCC
Q 024056 208 ELTCTVCLEQ-VNVGEI-VRSLPCLHQFHANCIDPWLR-QQGTCPVCKLRAGSGW 259 (273)
Q Consensus 208 ~~~C~ICle~-~~~~~~-v~~lpC~H~FH~~CI~~WL~-~~~~CP~CR~~v~~~~ 259 (273)
+..||+|..+ +..++. +...+|||.||..|++..+. ....||.|+..+..+.
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~ 57 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNN 57 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhh
Confidence 4589999996 334442 22237999999999999654 4568999998876543
No 35
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.14 E-value=9.2e-07 Score=79.82 Aligned_cols=48 Identities=29% Similarity=0.621 Sum_probs=42.9
Q ss_pred CCccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCcccccccccC
Q 024056 207 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGS 257 (273)
Q Consensus 207 ~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v~~ 257 (273)
.-+.|-||-+.+..+ ..++|||.||.-||...|..+..||+||....+
T Consensus 24 s~lrC~IC~~~i~ip---~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~e 71 (391)
T COG5432 24 SMLRCRICDCRISIP---CETTCGHTFCSLCIRRHLGTQPFCPVCREDPCE 71 (391)
T ss_pred hHHHhhhhhheeecc---eecccccchhHHHHHHHhcCCCCCccccccHHh
Confidence 345799999999988 788999999999999999999999999987643
No 36
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=8.1e-07 Score=78.95 Aligned_cols=45 Identities=38% Similarity=0.812 Sum_probs=40.0
Q ss_pred CCCccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCcccccc
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKL 253 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~ 253 (273)
.+...|+||++.|..+ ..+||+|.||..||..+......||.||.
T Consensus 11 ~~~~~C~iC~~~~~~p---~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 11 QEELTCPICLEYFREP---VLLPCGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred cccccChhhHHHhhcC---ccccccchHhHHHHHHhcCCCcCCcccCC
Confidence 4678999999999988 78999999999999999885567999993
No 37
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=4.4e-07 Score=66.19 Aligned_cols=50 Identities=36% Similarity=0.773 Sum_probs=36.5
Q ss_pred CCccccccccccccC--------Ce-eEEeC-CCCccChhhHHHHHhc---CCCccccccccc
Q 024056 207 DELTCTVCLEQVNVG--------EI-VRSLP-CLHQFHANCIDPWLRQ---QGTCPVCKLRAG 256 (273)
Q Consensus 207 ~~~~C~ICle~~~~~--------~~-v~~lp-C~H~FH~~CI~~WL~~---~~~CP~CR~~v~ 256 (273)
.+++|.||...|... |. ...+. |.|.||..||.+|+.. +..||.||+...
T Consensus 19 ~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 19 PDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 344899999988532 21 12333 8999999999999965 456999998653
No 38
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=1.2e-06 Score=83.87 Aligned_cols=52 Identities=27% Similarity=0.763 Sum_probs=39.8
Q ss_pred CCCcccccccccccc---CCe-----------eEEeCCCCccChhhHHHHHhc-CCCcccccccccC
Q 024056 206 EDELTCTVCLEQVNV---GEI-----------VRSLPCLHQFHANCIDPWLRQ-QGTCPVCKLRAGS 257 (273)
Q Consensus 206 ~~~~~C~ICle~~~~---~~~-----------v~~lpC~H~FH~~CI~~WL~~-~~~CP~CR~~v~~ 257 (273)
+....|+||+..+.- +.. -..+||.|+||..|+.+|... +-.||+||.+++.
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 345679999998742 111 124599999999999999995 4489999998864
No 39
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=98.02 E-value=1.1e-06 Score=64.05 Aligned_cols=51 Identities=29% Similarity=0.670 Sum_probs=24.7
Q ss_pred CccccccccccccCC-e--eEEe--CCCCccChhhHHHHHhc---C--------CCcccccccccCC
Q 024056 208 ELTCTVCLEQVNVGE-I--VRSL--PCLHQFHANCIDPWLRQ---Q--------GTCPVCKLRAGSG 258 (273)
Q Consensus 208 ~~~C~ICle~~~~~~-~--v~~l--pC~H~FH~~CI~~WL~~---~--------~~CP~CR~~v~~~ 258 (273)
+..|.||...+..++ . +..- .|+..||..|+.+||.. . .+||.|+.++.-.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~~ 68 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISWS 68 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEGG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeEe
Confidence 347999999876332 1 1222 39999999999999963 1 1499999988654
No 40
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.96 E-value=2e-06 Score=87.77 Aligned_cols=53 Identities=23% Similarity=0.732 Sum_probs=38.7
Q ss_pred CCCCCccccccccccc-cCC--eeEEeC-CCCccChhhHHHHHhc--CCCccccccccc
Q 024056 204 KTEDELTCTVCLEQVN-VGE--IVRSLP-CLHQFHANCIDPWLRQ--QGTCPVCKLRAG 256 (273)
Q Consensus 204 ~~~~~~~C~ICle~~~-~~~--~v~~lp-C~H~FH~~CI~~WL~~--~~~CP~CR~~v~ 256 (273)
+.+.-++|+||...+. .+. +-.+.+ |.|.||..|+.+|++. +++||+||..++
T Consensus 1465 ~fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1465 KFSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred hcCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 3455678999988776 221 112233 8999999999999987 557999997664
No 41
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.86 E-value=4.5e-06 Score=83.79 Aligned_cols=51 Identities=29% Similarity=0.496 Sum_probs=43.3
Q ss_pred CCccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCcccccccccC
Q 024056 207 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGS 257 (273)
Q Consensus 207 ~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v~~ 257 (273)
....|++|+..+..+.....-+|+|+||.+||..|-+...+||+||..+..
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhhe
Confidence 455799999998876555666799999999999999999999999986643
No 42
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=7.6e-06 Score=76.54 Aligned_cols=47 Identities=23% Similarity=0.832 Sum_probs=37.0
Q ss_pred cccccccccccCCeeEEeC-CCCccChhhHHHHHhc---CCCccccccccc
Q 024056 210 TCTVCLEQVNVGEIVRSLP-CLHQFHANCIDPWLRQ---QGTCPVCKLRAG 256 (273)
Q Consensus 210 ~C~ICle~~~~~~~v~~lp-C~H~FH~~CI~~WL~~---~~~CP~CR~~v~ 256 (273)
.|.||.+-+...+.+.... |||+||..|+-+|+.. +.+||+|+-.++
T Consensus 6 ~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~ 56 (465)
T KOG0827|consen 6 ECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQ 56 (465)
T ss_pred eeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeeccc
Confidence 5999966666665666666 9999999999999986 347999994443
No 43
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=1.3e-05 Score=75.00 Aligned_cols=56 Identities=32% Similarity=0.725 Sum_probs=41.2
Q ss_pred CCCccccccccccccCC----eeEEeC-CCCccChhhHHHHH--hc-----CCCcccccccccCCCCC
Q 024056 206 EDELTCTVCLEQVNVGE----IVRSLP-CLHQFHANCIDPWL--RQ-----QGTCPVCKLRAGSGWHE 261 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~----~v~~lp-C~H~FH~~CI~~WL--~~-----~~~CP~CR~~v~~~~~~ 261 (273)
..+.+|.||++.....- ....+| |.|.||..||+.|- .+ .+.||.||....-....
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~pS 226 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVNPS 226 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccccccc
Confidence 45778999999987432 122346 99999999999998 44 46799999876544333
No 44
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=1.5e-05 Score=73.98 Aligned_cols=53 Identities=25% Similarity=0.552 Sum_probs=43.3
Q ss_pred CCCccccccccccccCCeeEEeCCCC-ccChhhHHHHHhcCCCcccccccccCCCCC
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLPCLH-QFHANCIDPWLRQQGTCPVCKLRAGSGWHE 261 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lpC~H-~FH~~CI~~WL~~~~~CP~CR~~v~~~~~~ 261 (273)
+...+|.|||.+.... ..|||.| ..|..|.+..--+++.||+||+++..--..
T Consensus 288 ~~gkeCVIClse~rdt---~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll~i 341 (349)
T KOG4265|consen 288 ESGKECVICLSESRDT---VVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEELLEI 341 (349)
T ss_pred cCCCeeEEEecCCcce---EEecchhhehhHhHHHHHHHhhcCCCccccchHhhhee
Confidence 4567899999997754 7899999 589999988766788999999988754443
No 45
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.72 E-value=6.5e-06 Score=58.43 Aligned_cols=47 Identities=30% Similarity=0.648 Sum_probs=24.1
Q ss_pred CCccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCcccccccccC
Q 024056 207 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGS 257 (273)
Q Consensus 207 ~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v~~ 257 (273)
+...|++|.+.+.++ +....|.|+||..||..-+. ..||+|+.+.-.
T Consensus 6 ~lLrCs~C~~~l~~p--v~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~ 52 (65)
T PF14835_consen 6 ELLRCSICFDILKEP--VCLGGCEHIFCSSCIRDCIG--SECPVCHTPAWI 52 (65)
T ss_dssp HTTS-SSS-S--SS---B---SSS--B-TTTGGGGTT--TB-SSS--B-S-
T ss_pred HhcCCcHHHHHhcCC--ceeccCccHHHHHHhHHhcC--CCCCCcCChHHH
Confidence 456899999999855 44566999999999987544 459999887643
No 46
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=2.7e-05 Score=73.35 Aligned_cols=49 Identities=37% Similarity=0.872 Sum_probs=37.4
Q ss_pred CCcccccccccccc-CC-eeEEeCCCCccChhhHHHHHhc--CCCcccccccc
Q 024056 207 DELTCTVCLEQVNV-GE-IVRSLPCLHQFHANCIDPWLRQ--QGTCPVCKLRA 255 (273)
Q Consensus 207 ~~~~C~ICle~~~~-~~-~v~~lpC~H~FH~~CI~~WL~~--~~~CP~CR~~v 255 (273)
...+|+||++.+.- ++ .+..+.|||.|..+||+.||.+ ...||.|..+.
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~ka 55 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKA 55 (463)
T ss_pred ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChh
Confidence 34589999999974 34 3344559999999999999963 34699997654
No 47
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.57 E-value=2.4e-05 Score=71.07 Aligned_cols=52 Identities=25% Similarity=0.581 Sum_probs=43.4
Q ss_pred CCccccccccccccCCeeEEeCCCCccChhhHHHHHh-----------------------cCCCcccccccccCC
Q 024056 207 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLR-----------------------QQGTCPVCKLRAGSG 258 (273)
Q Consensus 207 ~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~-----------------------~~~~CP~CR~~v~~~ 258 (273)
....|.|||-.|..++..++++|-|+||..|+.+.|. .+..||+||..+...
T Consensus 114 p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e 188 (368)
T KOG4445|consen 114 PNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIE 188 (368)
T ss_pred CCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcccc
Confidence 4568999999999999899999999999999988762 122599999988644
No 48
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=3.6e-05 Score=70.02 Aligned_cols=49 Identities=29% Similarity=0.614 Sum_probs=41.0
Q ss_pred ccccccccccccCCeeEEeCCCCccChhhHHHHHhcC-CCcccccccccCCCC
Q 024056 209 LTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQ-GTCPVCKLRAGSGWH 260 (273)
Q Consensus 209 ~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~-~~CP~CR~~v~~~~~ 260 (273)
..|+||+..-..+ ..++|+|.||.-||.--+... .+|++||.++.+..-
T Consensus 8 ~eC~IC~nt~n~P---v~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i~ 57 (324)
T KOG0824|consen 8 KECLICYNTGNCP---VNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTID 57 (324)
T ss_pred CcceeeeccCCcC---ccccccchhhhhhhcchhhcCCCCCceecCCCCcchh
Confidence 4699999997766 789999999999998877664 469999999986543
No 49
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=2.7e-05 Score=78.40 Aligned_cols=50 Identities=26% Similarity=0.556 Sum_probs=40.8
Q ss_pred CCccccccccccccCCeeEEeCCCCccChhhHHHHHhc-CCCcccccccccCCC
Q 024056 207 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ-QGTCPVCKLRAGSGW 259 (273)
Q Consensus 207 ~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~-~~~CP~CR~~v~~~~ 259 (273)
.-.+|+.|-..+..- ....|+|.||..||..-+.. +..||.|.+.++.+.
T Consensus 642 ~~LkCs~Cn~R~Kd~---vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganD 692 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKDA---VITKCGHVFCEECVQTRYETRQRKCPKCNAAFGAND 692 (698)
T ss_pred hceeCCCccCchhhH---HHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCccc
Confidence 457899999887743 45669999999999998865 778999998887654
No 50
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=6.3e-05 Score=71.83 Aligned_cols=49 Identities=31% Similarity=0.669 Sum_probs=43.8
Q ss_pred CCCccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCcccccccccC
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGS 257 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v~~ 257 (273)
..+..|.||...+..+ +.+||||.||..||++-+.....||.||..+.+
T Consensus 82 ~sef~c~vc~~~l~~p---v~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPP---VVTPCGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCC---ccccccccccHHHHHHHhccCCCCccccccccc
Confidence 4678899999999977 777999999999999988888889999998875
No 51
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=2.8e-05 Score=53.26 Aligned_cols=46 Identities=24% Similarity=0.493 Sum_probs=35.0
Q ss_pred ccccccccccccCCeeEEeCCCC-ccChhhHHHHHh-cCCCcccccccccC
Q 024056 209 LTCTVCLEQVNVGEIVRSLPCLH-QFHANCIDPWLR-QQGTCPVCKLRAGS 257 (273)
Q Consensus 209 ~~C~ICle~~~~~~~v~~lpC~H-~FH~~CI~~WL~-~~~~CP~CR~~v~~ 257 (273)
.+|.||+|.-... ....||| ..|.+|-.+-++ .+..||+||+++.+
T Consensus 8 dECTICye~pvds---VlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~d 55 (62)
T KOG4172|consen 8 DECTICYEHPVDS---VLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKD 55 (62)
T ss_pred cceeeeccCcchH---HHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHH
Confidence 5799999986644 3445999 479999666444 78899999998753
No 52
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.33 E-value=7.9e-05 Score=69.98 Aligned_cols=51 Identities=37% Similarity=0.854 Sum_probs=41.3
Q ss_pred CCCccccccccccc-cCCeeEEeCCCCccChhhHHHHHhcCC--Cccccccccc
Q 024056 206 EDELTCTVCLEQVN-VGEIVRSLPCLHQFHANCIDPWLRQQG--TCPVCKLRAG 256 (273)
Q Consensus 206 ~~~~~C~ICle~~~-~~~~v~~lpC~H~FH~~CI~~WL~~~~--~CP~CR~~v~ 256 (273)
+-+.-|..|-+.+- .++.+..+||.|+||..|+.+.|.++. +||.||+...
T Consensus 363 e~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~CrklrS 416 (518)
T KOG1941|consen 363 ETELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKLRS 416 (518)
T ss_pred HHhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHHHh
Confidence 34668999998885 456778899999999999999998754 6999995443
No 53
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.22 E-value=0.0002 Score=50.09 Aligned_cols=43 Identities=28% Similarity=0.616 Sum_probs=29.3
Q ss_pred CCCccccccccccccCCeeEEeCCCCccChhhHHHHHhc--CCCccc
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ--QGTCPV 250 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~--~~~CP~ 250 (273)
.....|+|.+..++ ++++...|||.|-.+.|.+|+++ ...||+
T Consensus 9 ~~~~~CPiT~~~~~--~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 9 TISLKCPITLQPFE--DPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp B--SB-TTTSSB-S--SEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred EeccCCCCcCChhh--CCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 34678999999999 55777789999999999999954 346998
No 54
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.09 E-value=0.00021 Score=68.48 Aligned_cols=53 Identities=26% Similarity=0.654 Sum_probs=43.7
Q ss_pred CCCccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCcccccccccCCCC
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSGWH 260 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v~~~~~ 260 (273)
+++..|++|...+..+ +....|||.||..|+..|+..+..||.|+..+.....
T Consensus 19 ~~~l~C~~C~~vl~~p--~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~ 71 (391)
T KOG0297|consen 19 DENLLCPICMSVLRDP--VQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAEE 71 (391)
T ss_pred cccccCccccccccCC--CCCCCCCCcccccccchhhccCcCCcccccccchhhc
Confidence 4667899999999866 2225799999999999999999999999887654443
No 55
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.01 E-value=0.00016 Score=66.59 Aligned_cols=50 Identities=26% Similarity=0.668 Sum_probs=41.6
Q ss_pred CCCccccccccccccCCeeEEeC-CCCccChhhHHHHHhcCCCcccccccccCC
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLP-CLHQFHANCIDPWLRQQGTCPVCKLRAGSG 258 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lp-C~H~FH~~CI~~WL~~~~~CP~CR~~v~~~ 258 (273)
..-.+|.+|-..+... ++.. |.|.||..||...|...+.||.|...+...
T Consensus 13 n~~itC~LC~GYliDA---TTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t 63 (331)
T KOG2660|consen 13 NPHITCRLCGGYLIDA---TTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKT 63 (331)
T ss_pred ccceehhhccceeecc---hhHHHHHHHHHHHHHHHHHHHhccCCccceeccCc
Confidence 3566899999999865 4444 999999999999999999999998876543
No 56
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=96.91 E-value=0.00051 Score=73.17 Aligned_cols=51 Identities=25% Similarity=0.636 Sum_probs=41.6
Q ss_pred CCCccccccccccccCCeeEEeCCCCccChhhHHHHHhcC----------CCccccccccc
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQ----------GTCPVCKLRAG 256 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~----------~~CP~CR~~v~ 256 (273)
+.++.|.||..+--..-+...|.|+|+||..|.+.-|++. -.||+|+.++.
T Consensus 3484 D~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred ccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 4567899999887766778899999999999998877652 15999998875
No 57
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.89 E-value=0.00044 Score=59.62 Aligned_cols=44 Identities=20% Similarity=0.457 Sum_probs=38.6
Q ss_pred CccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCccccccc
Q 024056 208 ELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLR 254 (273)
Q Consensus 208 ~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~ 254 (273)
...|.||-++|..+ +.+.|||.||..|.-.-++....|-+|-+.
T Consensus 196 PF~C~iCKkdy~sp---vvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~ 239 (259)
T COG5152 196 PFLCGICKKDYESP---VVTECGHSFCSLCAIRKYQKGDECGVCGKA 239 (259)
T ss_pred ceeehhchhhccch---hhhhcchhHHHHHHHHHhccCCcceecchh
Confidence 45899999999988 677899999999998888889999999543
No 58
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.00099 Score=62.05 Aligned_cols=53 Identities=21% Similarity=0.366 Sum_probs=44.7
Q ss_pred CCCCCccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCcccccccccCCC
Q 024056 204 KTEDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSGW 259 (273)
Q Consensus 204 ~~~~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v~~~~ 259 (273)
.+.++..|+||...-... ...||+|.=|+.||.+-+.+.+.|-.|++.+.+..
T Consensus 418 p~sEd~lCpICyA~pi~A---vf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~~~ 470 (489)
T KOG4692|consen 418 PDSEDNLCPICYAGPINA---VFAPCSHRSCYGCITQHLMNCKRCFFCKTTVIDVI 470 (489)
T ss_pred CCcccccCcceecccchh---hccCCCCchHHHHHHHHHhcCCeeeEecceeeehh
Confidence 346778899998875544 67899999999999999999999999999887533
No 59
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=96.72 E-value=0.00057 Score=64.52 Aligned_cols=49 Identities=27% Similarity=0.641 Sum_probs=38.6
Q ss_pred ccccccccccccCCeeEEeCCCCccChhhHHHHHhc--CCCcccccccccCCCC
Q 024056 209 LTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ--QGTCPVCKLRAGSGWH 260 (273)
Q Consensus 209 ~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~--~~~CP~CR~~v~~~~~ 260 (273)
.-|-||-|.= ..+..-||||..|..|+..|=.. ..+||.||..+.....
T Consensus 370 eLCKICaend---KdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte~ 420 (563)
T KOG1785|consen 370 ELCKICAEND---KDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTEP 420 (563)
T ss_pred HHHHHhhccC---CCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccccc
Confidence 3599999873 34577899999999999999643 5689999998765443
No 60
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.0016 Score=58.71 Aligned_cols=49 Identities=24% Similarity=0.399 Sum_probs=38.8
Q ss_pred CCCccccccccccccCCeeEEeCCCCccChhhHHHHHhc--CCCccccccccc
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ--QGTCPVCKLRAG 256 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~--~~~CP~CR~~v~ 256 (273)
..+.+|++|-+.-..+ ....+|+|+||.-||..-+.. ..+||.|-..+.
T Consensus 237 t~~~~C~~Cg~~PtiP--~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIP--HVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cCCceeeccCCCCCCC--eeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 3566899999997755 345669999999999886654 468999987665
No 61
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.0012 Score=60.06 Aligned_cols=47 Identities=19% Similarity=0.347 Sum_probs=40.7
Q ss_pred CCccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCccccccccc
Q 024056 207 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAG 256 (273)
Q Consensus 207 ~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v~ 256 (273)
-...|-||...|..+ +++.|+|+||..|...-++....|++|-+...
T Consensus 240 ~Pf~c~icr~~f~~p---Vvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~ 286 (313)
T KOG1813|consen 240 LPFKCFICRKYFYRP---VVTKCGHYFCEVCALKPYQKGEKCYVCSQQTH 286 (313)
T ss_pred CCccccccccccccc---hhhcCCceeehhhhccccccCCcceecccccc
Confidence 356799999999988 78889999999999888888899999976554
No 62
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.41 E-value=0.001 Score=55.61 Aligned_cols=30 Identities=37% Similarity=0.967 Sum_probs=27.7
Q ss_pred CCCccccccccccccCCeeEEeCCCCccCh
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLPCLHQFHA 235 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lpC~H~FH~ 235 (273)
++..+|.||||++..++.+.+|||..+||+
T Consensus 175 ddkGECvICLEdL~~GdtIARLPCLCIYHK 204 (205)
T KOG0801|consen 175 DDKGECVICLEDLEAGDTIARLPCLCIYHK 204 (205)
T ss_pred ccCCcEEEEhhhccCCCceeccceEEEeec
Confidence 566789999999999999999999999996
No 63
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=96.18 E-value=0.0031 Score=42.43 Aligned_cols=45 Identities=24% Similarity=0.540 Sum_probs=22.5
Q ss_pred ccccccccccCC-eeEEeCCCCccChhhHHHHHh-cCCCcccccccc
Q 024056 211 CTVCLEQVNVGE-IVRSLPCLHQFHANCIDPWLR-QQGTCPVCKLRA 255 (273)
Q Consensus 211 C~ICle~~~~~~-~v~~lpC~H~FH~~CI~~WL~-~~~~CP~CR~~v 255 (273)
|++|.+++...+ ...--+||+..|..|...-++ .+..||-||.++
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 789999985443 232334899999999888776 377899999865
No 64
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.12 E-value=0.0042 Score=54.68 Aligned_cols=47 Identities=26% Similarity=0.668 Sum_probs=38.7
Q ss_pred CccccccccccccCCeeEEeCCCCccChhhHHHHHhcC--------CCcccccccc
Q 024056 208 ELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQ--------GTCPVCKLRA 255 (273)
Q Consensus 208 ~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~--------~~CP~CR~~v 255 (273)
...|..|-..+.++|.+ +|-|-|.||++|+++|-..- -.||.|...+
T Consensus 50 ~pNC~LC~t~La~gdt~-RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~ei 104 (299)
T KOG3970|consen 50 NPNCRLCNTPLASGDTT-RLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEI 104 (299)
T ss_pred CCCCceeCCccccCcce-eehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCcc
Confidence 34699999999988775 67799999999999997642 2599998766
No 65
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=96.07 E-value=0.0027 Score=49.02 Aligned_cols=33 Identities=27% Similarity=0.692 Sum_probs=27.7
Q ss_pred CCCccccccccccccCCeeEEeCCCCccChhhHH
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCID 239 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~ 239 (273)
.++..|++|-..+.. ......||||.||..|+.
T Consensus 76 ~~~~~C~vC~k~l~~-~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGN-SVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCC-ceEEEeCCCeEEeccccc
Confidence 355679999999986 567788999999999975
No 66
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.98 E-value=0.013 Score=52.31 Aligned_cols=53 Identities=17% Similarity=0.261 Sum_probs=44.7
Q ss_pred CCccccccccccccCCeeEEe-CCCCccChhhHHHHHhcCCCcccccccccCCC
Q 024056 207 DELTCTVCLEQVNVGEIVRSL-PCLHQFHANCIDPWLRQQGTCPVCKLRAGSGW 259 (273)
Q Consensus 207 ~~~~C~ICle~~~~~~~v~~l-pC~H~FH~~CI~~WL~~~~~CP~CR~~v~~~~ 259 (273)
....|+||.+.+...-.+..| ||||+|+.+|.++.++....||+|-.++.+..
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrd 273 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRD 273 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccc
Confidence 567899999999877665555 49999999999999999999999977776544
No 67
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.96 E-value=0.0027 Score=64.91 Aligned_cols=44 Identities=20% Similarity=0.674 Sum_probs=35.7
Q ss_pred CCccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCcccccccc
Q 024056 207 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRA 255 (273)
Q Consensus 207 ~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v 255 (273)
...+|..|-..++-+ .....|||.||.+|+. .....||.|+..+
T Consensus 839 q~skCs~C~~~LdlP--~VhF~CgHsyHqhC~e---~~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 839 QVSKCSACEGTLDLP--FVHFLCGHSYHQHCLE---DKEDKCPKCLPEL 882 (933)
T ss_pred eeeeecccCCccccc--eeeeecccHHHHHhhc---cCcccCCccchhh
Confidence 346899999988855 5667899999999998 5667899998843
No 68
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=95.80 E-value=0.0073 Score=40.42 Aligned_cols=40 Identities=33% Similarity=0.921 Sum_probs=26.8
Q ss_pred ccccccccccCCeeEEeCC--CC---ccChhhHHHHHhc--CCCcccc
Q 024056 211 CTVCLEQVNVGEIVRSLPC--LH---QFHANCIDPWLRQ--QGTCPVC 251 (273)
Q Consensus 211 C~ICle~~~~~~~v~~lpC--~H---~FH~~CI~~WL~~--~~~CP~C 251 (273)
|-||++.-.+.+ ....|| .- +-|.+|+.+|+.. +.+|++|
T Consensus 1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 678999877665 335675 33 6799999999974 5579887
No 69
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=95.71 E-value=0.0049 Score=50.19 Aligned_cols=36 Identities=22% Similarity=0.587 Sum_probs=29.8
Q ss_pred CccccccccccccCCeeEEeCCC------CccChhhHHHHHh
Q 024056 208 ELTCTVCLEQVNVGEIVRSLPCL------HQFHANCIDPWLR 243 (273)
Q Consensus 208 ~~~C~ICle~~~~~~~v~~lpC~------H~FH~~CI~~WL~ 243 (273)
..+|.||++.+...+.+..++|| |.||.+|+.+|-+
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~ 67 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR 67 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence 45799999999985567777776 8899999999943
No 70
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=95.56 E-value=0.0092 Score=55.20 Aligned_cols=46 Identities=28% Similarity=0.489 Sum_probs=37.4
Q ss_pred CCCccccccccccccCCeeEEeC-CCCccChhhHHHHHhcCCCccccccc
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLP-CLHQFHANCIDPWLRQQGTCPVCKLR 254 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lp-C~H~FH~~CI~~WL~~~~~CP~CR~~ 254 (273)
.+...|++|+.....+ ..+- -|-+||..||...+..++.||+=-.+
T Consensus 298 ~~~~~CpvClk~r~Np---tvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p 344 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQNP---TVLEVSGYVFCYPCIFSYVVNYGHCPVTGYP 344 (357)
T ss_pred CccccChhHHhccCCC---ceEEecceEEeHHHHHHHHHhcCCCCccCCc
Confidence 4566899999998876 3444 69999999999999999999985433
No 71
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=95.47 E-value=0.0049 Score=63.14 Aligned_cols=48 Identities=35% Similarity=0.870 Sum_probs=36.9
Q ss_pred CCCccccccccccccCCeeEEeC-CCCccChhhHHHHHhcCC-------Ccccccc
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLP-CLHQFHANCIDPWLRQQG-------TCPVCKL 253 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lp-C~H~FH~~CI~~WL~~~~-------~CP~CR~ 253 (273)
.+...|.||.+.+.....+-.-. |-|+||..||..|-++.. .||.|..
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqs 244 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQS 244 (950)
T ss_pred cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccc
Confidence 35678999999998765543333 889999999999987521 5999974
No 72
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.35 E-value=0.0077 Score=57.25 Aligned_cols=37 Identities=24% Similarity=0.660 Sum_probs=32.6
Q ss_pred CccccccccccccCCeeEEeCCCCccChhhHHHHHhc
Q 024056 208 ELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ 244 (273)
Q Consensus 208 ~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~ 244 (273)
...|.||++.....+....+||+|+||..|+...+..
T Consensus 184 lf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~ 220 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTI 220 (445)
T ss_pred cccceeeehhhcCcceeeecccchHHHHHHHHHHHHH
Confidence 4579999999887788889999999999999998753
No 73
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.34 E-value=0.0099 Score=50.58 Aligned_cols=56 Identities=27% Similarity=0.643 Sum_probs=38.0
Q ss_pred CCCccccccccccccC---C-eeEEeCCCCccChhhHHHHHhc-----C------CCcccccccccCCCCC
Q 024056 206 EDELTCTVCLEQVNVG---E-IVRSLPCLHQFHANCIDPWLRQ-----Q------GTCPVCKLRAGSGWHE 261 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~---~-~v~~lpC~H~FH~~CI~~WL~~-----~------~~CP~CR~~v~~~~~~ 261 (273)
++...|.||...-..| | ..--..||..||.-|+..||+. + ..||.|..++..++++
T Consensus 163 d~~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialKmSg 233 (234)
T KOG3268|consen 163 DELGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALKMSG 233 (234)
T ss_pred hhhhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceeeccC
Confidence 4455677776543322 1 1222459999999999999974 1 2599999988777654
No 74
>PHA03096 p28-like protein; Provisional
Probab=95.30 E-value=0.0079 Score=55.24 Aligned_cols=47 Identities=23% Similarity=0.462 Sum_probs=33.1
Q ss_pred ccccccccccccCC----eeEEeC-CCCccChhhHHHHHhc---CCC---cccccccc
Q 024056 209 LTCTVCLEQVNVGE----IVRSLP-CLHQFHANCIDPWLRQ---QGT---CPVCKLRA 255 (273)
Q Consensus 209 ~~C~ICle~~~~~~----~v~~lp-C~H~FH~~CI~~WL~~---~~~---CP~CR~~v 255 (273)
..|.||++...... .-..|+ |.|.||..||..|... ..+ ||.|+..+
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~~~~~~ 236 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRRLNTVI 236 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccchhhHH
Confidence 47999999986431 234566 9999999999999754 223 55555443
No 75
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.24 E-value=0.015 Score=54.29 Aligned_cols=51 Identities=25% Similarity=0.633 Sum_probs=39.7
Q ss_pred CCCCCCCccccccccccccCCeeEEeCCCCccChhhHHHH--HhcCCCcccccccc
Q 024056 202 NLKTEDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPW--LRQQGTCPVCKLRA 255 (273)
Q Consensus 202 ~~~~~~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~W--L~~~~~CP~CR~~v 255 (273)
+..+++..-|-||-+...-. ..+||+|..|-.|.-+. |-.++.||+||+..
T Consensus 55 ddtDEen~~C~ICA~~~TYs---~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 55 DDTDEENMNCQICAGSTTYS---ARYPCGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred cccccccceeEEecCCceEE---EeccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 34456777899999987633 78999999999997653 45688899999854
No 76
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.16 E-value=0.015 Score=54.52 Aligned_cols=44 Identities=30% Similarity=0.628 Sum_probs=32.8
Q ss_pred CCccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCccccccccc
Q 024056 207 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAG 256 (273)
Q Consensus 207 ~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v~ 256 (273)
...-|.||+++...- .-+||||.-| |..- .+...+||+||..+.
T Consensus 304 ~p~lcVVcl~e~~~~---~fvpcGh~cc--ct~c-s~~l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 304 QPDLCVVCLDEPKSA---VFVPCGHVCC--CTLC-SKHLPQCPVCRQRIR 347 (355)
T ss_pred CCCceEEecCCccce---eeecCCcEEE--chHH-HhhCCCCchhHHHHH
Confidence 455799999998764 7889999865 6544 334556999998764
No 77
>PHA02862 5L protein; Provisional
Probab=95.14 E-value=0.013 Score=48.20 Aligned_cols=45 Identities=20% Similarity=0.558 Sum_probs=33.6
Q ss_pred ccccccccccccCCeeEEeCCC-----CccChhhHHHHHhc--CCCcccccccccC
Q 024056 209 LTCTVCLEQVNVGEIVRSLPCL-----HQFHANCIDPWLRQ--QGTCPVCKLRAGS 257 (273)
Q Consensus 209 ~~C~ICle~~~~~~~v~~lpC~-----H~FH~~CI~~WL~~--~~~CP~CR~~v~~ 257 (273)
..|=||.+.-.++ .-||. -.-|.+|+.+|+.. +..|+.|+.++.-
T Consensus 3 diCWIC~~~~~e~----~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 3 DICWICNDVCDER----NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred CEEEEecCcCCCC----cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 4799999985432 35653 46799999999975 4579999997753
No 78
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=95.10 E-value=0.012 Score=54.64 Aligned_cols=53 Identities=23% Similarity=0.556 Sum_probs=38.7
Q ss_pred CCccccccccccccCCee-EEeCCCCccChhhHHHHHhc-CCCcccccccccCCC
Q 024056 207 DELTCTVCLEQVNVGEIV-RSLPCLHQFHANCIDPWLRQ-QGTCPVCKLRAGSGW 259 (273)
Q Consensus 207 ~~~~C~ICle~~~~~~~v-~~lpC~H~FH~~CI~~WL~~-~~~CP~CR~~v~~~~ 259 (273)
+++.|+.|+|.+...|.- .-.|||-..|.-|...--+. +..||-||..+.+..
T Consensus 13 eed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~den 67 (480)
T COG5175 13 EEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDEN 67 (480)
T ss_pred ccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccc
Confidence 344599999999876643 33569988888886664333 678999999876554
No 79
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.10 E-value=0.01 Score=54.25 Aligned_cols=43 Identities=30% Similarity=0.645 Sum_probs=35.4
Q ss_pred CccccccccccccCCeeEEeC-CCCccChhhHHHHH-hcCCCcccccc
Q 024056 208 ELTCTVCLEQVNVGEIVRSLP-CLHQFHANCIDPWL-RQQGTCPVCKL 253 (273)
Q Consensus 208 ~~~C~ICle~~~~~~~v~~lp-C~H~FH~~CI~~WL-~~~~~CP~CR~ 253 (273)
.+.|+.|-.....+ ..+| |+|.||.+||...| .....||.|..
T Consensus 274 ~LkCplc~~Llrnp---~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 274 SLKCPLCHCLLRNP---MKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred cccCcchhhhhhCc---ccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 48999999988866 5567 89999999999765 45778999944
No 80
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=95.01 E-value=0.021 Score=47.76 Aligned_cols=48 Identities=19% Similarity=0.585 Sum_probs=34.6
Q ss_pred CCCccccccccccccCCeeEEeCC--CC---ccChhhHHHHHhcC--CCcccccccccC
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLPC--LH---QFHANCIDPWLRQQ--GTCPVCKLRAGS 257 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lpC--~H---~FH~~CI~~WL~~~--~~CP~CR~~v~~ 257 (273)
..+..|-||.++-.. -.-|| .. .-|.+|+.+|+..+ ..|+.|++++.-
T Consensus 6 ~~~~~CRIC~~~~~~----~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i 60 (162)
T PHA02825 6 LMDKCCWICKDEYDV----VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI 60 (162)
T ss_pred CCCCeeEecCCCCCC----ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence 345689999988432 13465 44 45999999999764 469999987753
No 81
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.55 E-value=0.0076 Score=54.96 Aligned_cols=42 Identities=21% Similarity=0.540 Sum_probs=31.9
Q ss_pred CccccccccccccCCeeEEeCCCCc-cChhhHHHHHhcCCCccccccccc
Q 024056 208 ELTCTVCLEQVNVGEIVRSLPCLHQ-FHANCIDPWLRQQGTCPVCKLRAG 256 (273)
Q Consensus 208 ~~~C~ICle~~~~~~~v~~lpC~H~-FH~~CI~~WL~~~~~CP~CR~~v~ 256 (273)
..-|.||++.... ...|+|||. -|.+|-.. -+.||+||+.+.
T Consensus 300 ~~LC~ICmDaP~D---CvfLeCGHmVtCt~CGkr----m~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAPRD---CVFLECGHMVTCTKCGKR----MNECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCCcc---eEEeecCcEEeehhhccc----cccCchHHHHHH
Confidence 5579999998654 378999994 58888644 238999998664
No 82
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=94.55 E-value=0.015 Score=38.17 Aligned_cols=41 Identities=29% Similarity=0.824 Sum_probs=24.1
Q ss_pred ccccccccccCCeeEEeCCCCccChhhHHHHHhcCC--Ccccc
Q 024056 211 CTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQG--TCPVC 251 (273)
Q Consensus 211 C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~--~CP~C 251 (273)
|.+|-+....|.......|+=.+|..|+..+++... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 678888888873332224988999999999998755 79988
No 83
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.52 E-value=0.012 Score=52.26 Aligned_cols=46 Identities=22% Similarity=0.501 Sum_probs=33.5
Q ss_pred cccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCcccccccccCC
Q 024056 210 TCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSG 258 (273)
Q Consensus 210 ~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v~~~ 258 (273)
-|--|..--. ++....+.|.|+||..|...- ....||+||..+...
T Consensus 5 hCn~C~~~~~-~~~f~LTaC~HvfC~~C~k~~--~~~~C~lCkk~ir~i 50 (233)
T KOG4739|consen 5 HCNKCFRFPS-QDPFFLTACRHVFCEPCLKAS--SPDVCPLCKKSIRII 50 (233)
T ss_pred EeccccccCC-CCceeeeechhhhhhhhcccC--Cccccccccceeeee
Confidence 4676665555 777888889999999996542 223899999986543
No 84
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=94.42 E-value=0.022 Score=39.26 Aligned_cols=47 Identities=28% Similarity=0.520 Sum_probs=35.2
Q ss_pred CCccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCcccccccccCC
Q 024056 207 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSG 258 (273)
Q Consensus 207 ~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v~~~ 258 (273)
....|..|...-..+ ..+||||..+..|.+- ++-+.||.|-+++...
T Consensus 6 ~~~~~~~~~~~~~~~---~~~pCgH~I~~~~f~~--~rYngCPfC~~~~~~~ 52 (55)
T PF14447_consen 6 PEQPCVFCGFVGTKG---TVLPCGHLICDNCFPG--ERYNGCPFCGTPFEFD 52 (55)
T ss_pred cceeEEEcccccccc---ccccccceeeccccCh--hhccCCCCCCCcccCC
Confidence 344677777775555 7899999999999654 3677899998877543
No 85
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=94.02 E-value=0.022 Score=55.78 Aligned_cols=51 Identities=25% Similarity=0.624 Sum_probs=38.7
Q ss_pred CCCccccccccccccCCeeEEeCCCCccChhhHHHHHhc-----CCCcccccccccCCC
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ-----QGTCPVCKLRAGSGW 259 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~-----~~~CP~CR~~v~~~~ 259 (273)
.....|.+|-+.-+.. ....|.|.||..||.+++.. +-+||.|-..+.-.-
T Consensus 534 k~~~~C~lc~d~aed~---i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDl 589 (791)
T KOG1002|consen 534 KGEVECGLCHDPAEDY---IESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDL 589 (791)
T ss_pred cCceeecccCChhhhh---HhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccc
Confidence 3456799999885543 56779999999999988753 458999977665443
No 86
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.80 E-value=0.0043 Score=58.52 Aligned_cols=51 Identities=18% Similarity=0.510 Sum_probs=43.5
Q ss_pred CccccccccccccC-CeeEEeCCCCccChhhHHHHHhcCCCcccccccccCC
Q 024056 208 ELTCTVCLEQVNVG-EIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSG 258 (273)
Q Consensus 208 ~~~C~ICle~~~~~-~~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v~~~ 258 (273)
...|+||.+.+.+. +.+..+-|||.+|..||++||.....||.|+..++..
T Consensus 196 v~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~~~ 247 (465)
T KOG0827|consen 196 VGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELPKN 247 (465)
T ss_pred HhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhhhh
Confidence 45799999999865 5666677999999999999999988999999877643
No 87
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.92 E-value=0.071 Score=48.84 Aligned_cols=47 Identities=30% Similarity=0.642 Sum_probs=36.7
Q ss_pred ccccccccccccCC---eeEEeCCCCccChhhHHHHHhcC-CCcccccccc
Q 024056 209 LTCTVCLEQVNVGE---IVRSLPCLHQFHANCIDPWLRQQ-GTCPVCKLRA 255 (273)
Q Consensus 209 ~~C~ICle~~~~~~---~v~~lpC~H~FH~~CI~~WL~~~-~~CP~CR~~v 255 (273)
..|-||-++|...+ .-+.+.|||.||..|+.+-+... ..||.||...
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 47999999998663 23456699999999998876653 3699999985
No 88
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=92.84 E-value=0.043 Score=56.14 Aligned_cols=48 Identities=21% Similarity=0.500 Sum_probs=38.0
Q ss_pred ccccccccccccCCeeEEeCCCCccChhhHHHHHhcC--CCcccccccccCCCC
Q 024056 209 LTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQ--GTCPVCKLRAGSGWH 260 (273)
Q Consensus 209 ~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~--~~CP~CR~~v~~~~~ 260 (273)
..|.||++ .+.....+|+|.||.+|+.+-+... ..||.||..+.....
T Consensus 455 ~~c~ic~~----~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l 504 (674)
T KOG1001|consen 455 HWCHICCD----LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKL 504 (674)
T ss_pred cccccccc----cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHHH
Confidence 68999999 3556788899999999998877652 359999987755443
No 89
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=92.72 E-value=0.031 Score=59.80 Aligned_cols=47 Identities=30% Similarity=0.771 Sum_probs=39.9
Q ss_pred CCccccccccccc-cCCeeEEeCCCCccChhhHHHHHhcCCCccccccccc
Q 024056 207 DELTCTVCLEQVN-VGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAG 256 (273)
Q Consensus 207 ~~~~C~ICle~~~-~~~~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v~ 256 (273)
....|.||++... .+ .+..|||.+|..|...|+..+..||.|+....
T Consensus 1152 ~~~~c~ic~dil~~~~---~I~~cgh~~c~~c~~~~l~~~s~~~~~ksi~~ 1199 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQG---GIAGCGHEPCCRCDELWLYASSRCPICKSIKG 1199 (1394)
T ss_pred cccchHHHHHHHHhcC---CeeeechhHhhhHHHHHHHHhccCcchhhhhh
Confidence 3448999999988 44 56789999999999999999999999985443
No 90
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.71 E-value=0.05 Score=56.30 Aligned_cols=36 Identities=25% Similarity=0.576 Sum_probs=29.9
Q ss_pred CCCccccccccccccCCeeEEeCCCCccChhhHHHHH
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWL 242 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL 242 (273)
+..++|.+|...+.. .+-...||||.||.+||.+-.
T Consensus 815 ep~d~C~~C~~~ll~-~pF~vf~CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLI-KPFYVFPCGHCFHRDCLIRHV 850 (911)
T ss_pred cCccchHHhcchhhc-CcceeeeccchHHHHHHHHHH
Confidence 567899999998874 356788999999999997764
No 91
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=92.69 E-value=0.11 Score=43.40 Aligned_cols=36 Identities=28% Similarity=0.765 Sum_probs=22.9
Q ss_pred CccccccccccccCCeeEE-------eC--CCCc-cChhhHHHHHh
Q 024056 208 ELTCTVCLEQVNVGEIVRS-------LP--CLHQ-FHANCIDPWLR 243 (273)
Q Consensus 208 ~~~C~ICle~~~~~~~v~~-------lp--C~H~-FH~~CI~~WL~ 243 (273)
+.+|+||||.-...-.+.. -| |+.. -|..|+++.-+
T Consensus 2 d~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkk 47 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKK 47 (162)
T ss_pred CccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHH
Confidence 5589999999765421111 12 5443 38999999753
No 92
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=92.59 E-value=0.052 Score=49.58 Aligned_cols=45 Identities=27% Similarity=0.658 Sum_probs=37.4
Q ss_pred ccccccccccccCC-eeEEeCCCCccChhhHHHHHhcCCCcccccc
Q 024056 209 LTCTVCLEQVNVGE-IVRSLPCLHQFHANCIDPWLRQQGTCPVCKL 253 (273)
Q Consensus 209 ~~C~ICle~~~~~~-~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~ 253 (273)
..|+||.+.+.... .+..++|||.-|..|..+....+-+||+|.+
T Consensus 159 ~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 159 FNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred CCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 34999999876543 4567889999999999998887889999987
No 93
>PF04641 Rtf2: Rtf2 RING-finger
Probab=92.03 E-value=0.19 Score=45.57 Aligned_cols=54 Identities=22% Similarity=0.376 Sum_probs=41.4
Q ss_pred CCCccccccccccccCC-eeEEeCCCCccChhhHHHHHhcCCCcccccccccCCCC
Q 024056 206 EDELTCTVCLEQVNVGE-IVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSGWH 260 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~-~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v~~~~~ 260 (273)
.....|||....+.... -+...||||+|...+|.+- .....||+|-.++....-
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k~~~~Cp~c~~~f~~~Di 165 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-KKSKKCPVCGKPFTEEDI 165 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-cccccccccCCccccCCE
Confidence 45678999999995433 4555689999999999996 335679999888775543
No 94
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=91.40 E-value=0.068 Score=35.73 Aligned_cols=43 Identities=23% Similarity=0.572 Sum_probs=25.6
Q ss_pred ccccccccccCCeeEEeCC-CCccChhhHHHHHhcCCCcccccccccCC
Q 024056 211 CTVCLEQVNVGEIVRSLPC-LHQFHANCIDPWLRQQGTCPVCKLRAGSG 258 (273)
Q Consensus 211 C~ICle~~~~~~~v~~lpC-~H~FH~~CI~~WL~~~~~CP~CR~~v~~~ 258 (273)
|--|.-..+ ....| .|+.|-.|+...+.....||+|..+++.+
T Consensus 5 CKsCWf~~k-----~Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtk 48 (50)
T PF03854_consen 5 CKSCWFANK-----GLIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPTK 48 (50)
T ss_dssp --SS-S--S-----SEEE-SS-EEEHHHHHHT-SSSSEETTTTEE----
T ss_pred ChhhhhcCC-----CeeeecchhHHHHHHHHHhccccCCCcccCcCccc
Confidence 555655433 23457 49999999999999999999999998865
No 95
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=91.07 E-value=0.25 Score=34.03 Aligned_cols=40 Identities=25% Similarity=0.647 Sum_probs=30.4
Q ss_pred CCccccccccccccCCeeEEeC-CCCccChhhHHHHHhcCCCccc
Q 024056 207 DELTCTVCLEQVNVGEIVRSLP-CLHQFHANCIDPWLRQQGTCPV 250 (273)
Q Consensus 207 ~~~~C~ICle~~~~~~~v~~lp-C~H~FH~~CI~~WL~~~~~CP~ 250 (273)
....|.+|-+.|..++.+..-| ||-.+|.+|.++ ...|-.
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~----~g~C~~ 44 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK----AGGCIN 44 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHHhh----CCceEe
Confidence 3457999999998666666666 999999999543 455644
No 96
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=91.03 E-value=0.17 Score=48.81 Aligned_cols=36 Identities=36% Similarity=0.607 Sum_probs=31.6
Q ss_pred CCCccccccccccccCCeeEEeCCCCccChhhHHHHHhc
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ 244 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~ 244 (273)
+++.+|+||..-|.++ +.|||+|..|..|...-+.+
T Consensus 2 eeelkc~vc~~f~~ep---iil~c~h~lc~~ca~~~~~~ 37 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREP---IILPCSHNLCQACARNILVQ 37 (699)
T ss_pred cccccCceehhhccCc---eEeecccHHHHHHHHhhccc
Confidence 4678999999999988 89999999999998876654
No 97
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=90.73 E-value=0.14 Score=47.37 Aligned_cols=45 Identities=29% Similarity=0.708 Sum_probs=36.1
Q ss_pred CCCccccccccccccCCeeEEeCC--CCccChhhHHHHHhcCCCcccccccccC
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLPC--LHQFHANCIDPWLRQQGTCPVCKLRAGS 257 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lpC--~H~FH~~CI~~WL~~~~~CP~CR~~v~~ 257 (273)
.+-.+|+||.+.+..+ ...| ||.-|..|-. +..+.||.||..++.
T Consensus 46 ~~lleCPvC~~~l~~P----i~QC~nGHlaCssC~~---~~~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 46 LDLLDCPVCFNPLSPP----IFQCDNGHLACSSCRT---KVSNKCPTCRLPIGN 92 (299)
T ss_pred hhhccCchhhccCccc----ceecCCCcEehhhhhh---hhcccCCcccccccc
Confidence 4667899999999876 3446 7999998854 568889999999884
No 98
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=90.33 E-value=0.26 Score=46.75 Aligned_cols=28 Identities=18% Similarity=0.659 Sum_probs=20.7
Q ss_pred CCccChhhHHHHHhc-------------CCCcccccccccC
Q 024056 230 LHQFHANCIDPWLRQ-------------QGTCPVCKLRAGS 257 (273)
Q Consensus 230 ~H~FH~~CI~~WL~~-------------~~~CP~CR~~v~~ 257 (273)
.-..|.+|+-+|+.. +-+||.||++..-
T Consensus 312 RPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCi 352 (358)
T PF10272_consen 312 RPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCI 352 (358)
T ss_pred cchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCccccee
Confidence 344588999999853 2369999998754
No 99
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=90.26 E-value=0.21 Score=40.65 Aligned_cols=51 Identities=27% Similarity=0.496 Sum_probs=37.8
Q ss_pred CCccccccccccccCCeeEEe-C---CCCccChhhHHHHHhc---CCCcccccccccCCCC
Q 024056 207 DELTCTVCLEQVNVGEIVRSL-P---CLHQFHANCIDPWLRQ---QGTCPVCKLRAGSGWH 260 (273)
Q Consensus 207 ~~~~C~ICle~~~~~~~v~~l-p---C~H~FH~~CI~~WL~~---~~~CP~CR~~v~~~~~ 260 (273)
.-.+|.||.|...+. +-| | ||-..|..|-....+. +..||+|++.+.....
T Consensus 79 ~lYeCnIC~etS~ee---~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~~ 136 (140)
T PF05290_consen 79 KLYECNICKETSAEE---RFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSSS 136 (140)
T ss_pred CceeccCcccccchh---hcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccccc
Confidence 355799999997755 223 2 8999999998775443 6789999998865543
No 100
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=89.89 E-value=0.17 Score=51.78 Aligned_cols=40 Identities=30% Similarity=0.695 Sum_probs=28.1
Q ss_pred cccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCccc
Q 024056 210 TCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPV 250 (273)
Q Consensus 210 ~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~~CP~ 250 (273)
.|.||--.+. +....+..|+|..|.+|..+|++....||.
T Consensus 1030 ~C~~C~l~V~-gss~~Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1030 QCAICHLAVR-GSSNFCGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred eeeeEeeEee-ccchhhccccccccHHHHHHHHhcCCcCCC
Confidence 3444433332 223345569999999999999999999984
No 101
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=88.18 E-value=0.49 Score=48.73 Aligned_cols=58 Identities=21% Similarity=0.222 Sum_probs=41.1
Q ss_pred CCCCCCccccccccccccCC-eeEEeC---CCCccChhhHHHHHhc------CCCcccccccccCCCC
Q 024056 203 LKTEDELTCTVCLEQVNVGE-IVRSLP---CLHQFHANCIDPWLRQ------QGTCPVCKLRAGSGWH 260 (273)
Q Consensus 203 ~~~~~~~~C~ICle~~~~~~-~v~~lp---C~H~FH~~CI~~WL~~------~~~CP~CR~~v~~~~~ 260 (273)
.+..+..+|.+|...+..++ ....+| |+|.||..||..|..+ +-.|+.|..-+..+..
T Consensus 91 eK~a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR 158 (1134)
T KOG0825|consen 91 EKTAESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSR 158 (1134)
T ss_pred cccccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhh
Confidence 34456778888888887632 233455 9999999999999864 3358999876655443
No 102
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=88.00 E-value=0.24 Score=45.79 Aligned_cols=46 Identities=26% Similarity=0.575 Sum_probs=30.3
Q ss_pred cccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCcccccccccCCC
Q 024056 210 TCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSGW 259 (273)
Q Consensus 210 ~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v~~~~ 259 (273)
.|.-|=-.+.. .-+..||.|+||.+|... ...+.||.|-.++..-.
T Consensus 92 fCd~Cd~PI~I--YGRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~VqrIe 137 (389)
T KOG2932|consen 92 FCDRCDFPIAI--YGRMIPCKHVFCLECARS--DSDKICPLCDDRVQRIE 137 (389)
T ss_pred eecccCCccee--eecccccchhhhhhhhhc--CccccCcCcccHHHHHH
Confidence 45556444332 225678999999999643 34668999977665433
No 103
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.75 E-value=0.29 Score=43.00 Aligned_cols=41 Identities=32% Similarity=0.687 Sum_probs=30.9
Q ss_pred ccccccccccCCeeEEeCCCC-ccChhhHHHHHhcCCCcccccccccCC
Q 024056 211 CTVCLEQVNVGEIVRSLPCLH-QFHANCIDPWLRQQGTCPVCKLRAGSG 258 (273)
Q Consensus 211 C~ICle~~~~~~~v~~lpC~H-~FH~~CI~~WL~~~~~CP~CR~~v~~~ 258 (273)
|-.|-+. +-.|..+||.| .+|..|-.. -.+||+|+......
T Consensus 161 Cr~C~~~---~~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~s~ 202 (207)
T KOG1100|consen 161 CRKCGER---EATVLLLPCRHLCLCGICDES----LRICPICRSPKTSS 202 (207)
T ss_pred ceecCcC---CceEEeecccceEeccccccc----CccCCCCcChhhce
Confidence 8888777 34578899998 689999543 45699998876544
No 104
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.29 E-value=0.47 Score=45.19 Aligned_cols=46 Identities=22% Similarity=0.385 Sum_probs=39.0
Q ss_pred CCCccccccccccccCCeeEEeCCCCccChhhHHHHHhcC---CCcccc
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQ---GTCPVC 251 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~---~~CP~C 251 (273)
.....|||=-+.-...++...|.|||+...+-|++..+.. ..||.|
T Consensus 332 HSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYC 380 (394)
T KOG2817|consen 332 HSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYC 380 (394)
T ss_pred cceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCC
Confidence 3557899988888888888999999999999999977654 369999
No 105
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=87.08 E-value=0.44 Score=49.19 Aligned_cols=53 Identities=21% Similarity=0.584 Sum_probs=39.0
Q ss_pred CCCCccccccccccccCCeeEEeCCC-----CccChhhHHHHHhc--CCCcccccccccCC
Q 024056 205 TEDELTCTVCLEQVNVGEIVRSLPCL-----HQFHANCIDPWLRQ--QGTCPVCKLRAGSG 258 (273)
Q Consensus 205 ~~~~~~C~ICle~~~~~~~v~~lpC~-----H~FH~~CI~~WL~~--~~~CP~CR~~v~~~ 258 (273)
++|+..|-||..+=..++++.. ||. -+.|.+|+.+|+.- ...|-+|+.++.=+
T Consensus 9 N~d~~~CRICr~e~~~d~pLfh-PCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk 68 (1175)
T COG5183 9 NEDKRSCRICRTEDIRDDPLFH-PCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFK 68 (1175)
T ss_pred CccchhceeecCCCCCCCcCcc-cccccchhHHHHHHHHHHHHhcCCCcceeeecceeeee
Confidence 3566789999988777766543 443 35799999999975 44699998876533
No 106
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.02 E-value=0.24 Score=44.56 Aligned_cols=51 Identities=24% Similarity=0.649 Sum_probs=34.4
Q ss_pred CCCccccccccccccCCee-EEeCC-----CCccChhhHHHHHhcCC--------Cccccccccc
Q 024056 206 EDELTCTVCLEQVNVGEIV-RSLPC-----LHQFHANCIDPWLRQQG--------TCPVCKLRAG 256 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v-~~lpC-----~H~FH~~CI~~WL~~~~--------~CP~CR~~v~ 256 (273)
+.+-.|-||+..=+..-.. -.-|| .|.-|.+|+..|+..+. +||-|++.+.
T Consensus 18 e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYi 82 (293)
T KOG3053|consen 18 ELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYI 82 (293)
T ss_pred ccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhe
Confidence 4566788999874432111 12355 37899999999995422 5999998653
No 107
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=86.81 E-value=0.3 Score=43.61 Aligned_cols=49 Identities=24% Similarity=0.566 Sum_probs=36.2
Q ss_pred CCcccccccccc-ccCCeeE-EeC-CCCccChhhHHHHHhcCC-Ccc--cccccc
Q 024056 207 DELTCTVCLEQV-NVGEIVR-SLP-CLHQFHANCIDPWLRQQG-TCP--VCKLRA 255 (273)
Q Consensus 207 ~~~~C~ICle~~-~~~~~v~-~lp-C~H~FH~~CI~~WL~~~~-~CP--~CR~~v 255 (273)
.+..||||..+. -.++... .-| |-|..|.+|+++-+...+ .|| -|-+.+
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kIL 63 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKIL 63 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHH
Confidence 455899998774 4555433 446 999999999999988754 699 785543
No 108
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=85.76 E-value=0.66 Score=42.49 Aligned_cols=46 Identities=20% Similarity=0.481 Sum_probs=33.9
Q ss_pred ccccccccc-ccCCeeE-EeCCCCccChhhHHHHHhcC-CCcccccccc
Q 024056 210 TCTVCLEQV-NVGEIVR-SLPCLHQFHANCIDPWLRQQ-GTCPVCKLRA 255 (273)
Q Consensus 210 ~C~ICle~~-~~~~~v~-~lpC~H~FH~~CI~~WL~~~-~~CP~CR~~v 255 (273)
.|++|-.+. ..++.+. .-+|+|..|.+|.+.-+... ..||.|-..+
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iL 50 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVIL 50 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchh
Confidence 599998764 3444332 33699999999999988764 5799996654
No 109
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=85.25 E-value=0.83 Score=46.88 Aligned_cols=45 Identities=27% Similarity=0.536 Sum_probs=33.6
Q ss_pred CccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCccc--ccc
Q 024056 208 ELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPV--CKL 253 (273)
Q Consensus 208 ~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~~CP~--CR~ 253 (273)
.-+|.+|-..+. |..+-.--|||.-|.+|+.+|+..+..||. |-.
T Consensus 779 ~~~CtVC~~vi~-G~~~~c~~C~H~gH~sh~~sw~~~~s~ca~~~C~~ 825 (839)
T KOG0269|consen 779 SAKCTVCDLVIR-GVDVWCQVCGHGGHDSHLKSWFFKASPCAKSICPH 825 (839)
T ss_pred hcCceeecceee-eeEeecccccccccHHHHHHHHhcCCCCccccCCc
Confidence 347888876655 333333349999999999999999998877 643
No 110
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.04 E-value=0.34 Score=46.46 Aligned_cols=38 Identities=21% Similarity=0.640 Sum_probs=28.2
Q ss_pred CCccccccc-cccccCCeeEEeCCCCccChhhHHHHHhc
Q 024056 207 DELTCTVCL-EQVNVGEIVRSLPCLHQFHANCIDPWLRQ 244 (273)
Q Consensus 207 ~~~~C~ICl-e~~~~~~~v~~lpC~H~FH~~CI~~WL~~ 244 (273)
...+|.||. +.....+......|+|.||.+|+.+-+..
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev 183 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEV 183 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhhh
Confidence 356899999 54444344445669999999999988764
No 111
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=84.42 E-value=0.61 Score=42.62 Aligned_cols=49 Identities=24% Similarity=0.558 Sum_probs=35.3
Q ss_pred CccccccccccccCCe-eEEeCCC-----CccChhhHHHHHh--cCCCccccccccc
Q 024056 208 ELTCTVCLEQVNVGEI-VRSLPCL-----HQFHANCIDPWLR--QQGTCPVCKLRAG 256 (273)
Q Consensus 208 ~~~C~ICle~~~~~~~-v~~lpC~-----H~FH~~CI~~WL~--~~~~CP~CR~~v~ 256 (273)
+..|-||.++...... ....||. +..|..|+..|+. .+..|.+|.....
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~ 134 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFI 134 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccce
Confidence 4679999998764321 3456653 5679999999997 4567999987553
No 112
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=83.83 E-value=0.35 Score=48.50 Aligned_cols=46 Identities=17% Similarity=0.213 Sum_probs=27.5
Q ss_pred CCCCccccc-ccCCcccCcchhHHHHHHHHHHHHhccCcCchhHHHHH
Q 024056 19 FIPERRTVR-IHAGRPVNSNSLAFLVTVLLLFMILNSHQMSSNFLLWI 65 (273)
Q Consensus 19 ~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 65 (273)
+||-|=.+- --..+||+...+-||..+-- .++++...+++-+..-+
T Consensus 379 vIPARVl~~WDf~~y~Vs~~a~~~L~~ir~-~Pl~~~q~ln~~Ly~~~ 425 (580)
T KOG1829|consen 379 VIPARVLHNWDFTKYPVSNFAKQFLDEIRE-QPLFNLQDLNPDLYSKV 425 (580)
T ss_pred cccccceecccCcccccchhHHHHHHHHhc-cchhhhcccChHHHhhh
Confidence 467664332 22778888888888877654 44445546666554444
No 113
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=81.88 E-value=0.35 Score=49.22 Aligned_cols=46 Identities=30% Similarity=0.679 Sum_probs=36.9
Q ss_pred CccccccccccccCCeeEEeCCCCccChhhHHHHHhcC---CCccccccccc
Q 024056 208 ELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQ---GTCPVCKLRAG 256 (273)
Q Consensus 208 ~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~---~~CP~CR~~v~ 256 (273)
..+|+||...+..+ ..+.|-|.|+..|+..-+... ..||+|+..+.
T Consensus 21 ~lEc~ic~~~~~~p---~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~e 69 (684)
T KOG4362|consen 21 ILECPICLEHVKEP---SLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIE 69 (684)
T ss_pred hccCCceeEEeecc---chhhhhHHHHhhhhhceeeccCccccchhhhhhhh
Confidence 45799999999987 678899999999987765543 46999986543
No 114
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.04 E-value=1 Score=43.17 Aligned_cols=44 Identities=27% Similarity=0.534 Sum_probs=31.0
Q ss_pred CccccccccccccCCe--eEEeCCCCccChhhHHHHHhcCCCcccc
Q 024056 208 ELTCTVCLEQVNVGEI--VRSLPCLHQFHANCIDPWLRQQGTCPVC 251 (273)
Q Consensus 208 ~~~C~ICle~~~~~~~--v~~lpC~H~FH~~CI~~WL~~~~~CP~C 251 (273)
-..|+.|...+.-.+. ...-.|||.||+.|...|...+..|..|
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred cCcCcccceeeeecCCcceEEeeccccchhhcCcchhhCCccccCc
Confidence 3468887776653332 2222399999999999998888877655
No 115
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.82 E-value=1.4 Score=44.10 Aligned_cols=51 Identities=29% Similarity=0.714 Sum_probs=40.0
Q ss_pred CCCccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCcccccccccCCCCCCc
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSGWHETR 263 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v~~~~~~~~ 263 (273)
+....|.||+++. . .+..+|. |..|+..|+..+..||.|+.....+.....
T Consensus 477 ~~~~~~~~~~~~~-~---~~~~~~~---~~~~l~~~~~~~~~~pl~~~~~~~~~~~~~ 527 (543)
T KOG0802|consen 477 EPNDVCAICYQEM-S---ARITPCS---HALCLRKWLYVQEVCPLCHTYMKEDDFLSK 527 (543)
T ss_pred cccCcchHHHHHH-H---hcccccc---chhHHHhhhhhccccCCCchhhhcccccCc
Confidence 4456799999998 2 3667788 899999999999999999887765544433
No 116
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.69 E-value=1.3 Score=40.79 Aligned_cols=30 Identities=17% Similarity=0.500 Sum_probs=22.2
Q ss_pred CCCccChhhHHHHHh-------------cCCCcccccccccCC
Q 024056 229 CLHQFHANCIDPWLR-------------QQGTCPVCKLRAGSG 258 (273)
Q Consensus 229 C~H~FH~~CI~~WL~-------------~~~~CP~CR~~v~~~ 258 (273)
|....|.+|+-+|+. ++-+||.||+...-.
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~ 367 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIR 367 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEe
Confidence 445678899998873 345799999987643
No 117
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=75.71 E-value=1.4 Score=38.74 Aligned_cols=44 Identities=32% Similarity=0.774 Sum_probs=36.5
Q ss_pred CCccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCccccc
Q 024056 207 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCK 252 (273)
Q Consensus 207 ~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR 252 (273)
.-..|.+|-.....+ ++.-.|+-.+|..|+...+.....||.|-
T Consensus 180 nlk~Cn~Ch~LvIqg--~rCg~c~i~~h~~c~qty~q~~~~cphc~ 223 (235)
T KOG4718|consen 180 NLKNCNLCHCLVIQG--IRCGSCNIQYHRGCIQTYLQRRDICPHCG 223 (235)
T ss_pred HHHHHhHhHHHhhee--eccCcccchhhhHHHHHHhcccCcCCchh
Confidence 456799999998866 23344888999999999999999999993
No 118
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=70.20 E-value=1.4 Score=44.58 Aligned_cols=44 Identities=30% Similarity=0.608 Sum_probs=31.4
Q ss_pred CCccccccccccccCCee-EEeCCCCccChhhHHHHHhcCCCcccccc
Q 024056 207 DELTCTVCLEQVNVGEIV-RSLPCLHQFHANCIDPWLRQQGTCPVCKL 253 (273)
Q Consensus 207 ~~~~C~ICle~~~~~~~v-~~lpC~H~FH~~CI~~WL~~~~~CP~CR~ 253 (273)
+-..|.||+..|...... +.+-|||..|.+|+..-. +.+|| |+.
T Consensus 10 ~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~ly--n~scp-~~~ 54 (861)
T KOG3161|consen 10 LLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLY--NASCP-TKR 54 (861)
T ss_pred HHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHh--hccCC-CCc
Confidence 456799999888765322 345599999999987643 55688 544
No 119
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=69.48 E-value=3.4 Score=36.05 Aligned_cols=41 Identities=27% Similarity=0.771 Sum_probs=27.2
Q ss_pred Cccccccccc-----cccCCeeEEeCCCCccChhhHHHHHhcCCCcccccc
Q 024056 208 ELTCTVCLEQ-----VNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKL 253 (273)
Q Consensus 208 ~~~C~ICle~-----~~~~~~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~ 253 (273)
...|-+|-++ |+.....+.-.|+-.||..|.. +..||.|..
T Consensus 152 GfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~-----~~~CpkC~R 197 (202)
T PF13901_consen 152 GFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFR-----KKSCPKCAR 197 (202)
T ss_pred CCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcC-----CCCCCCcHh
Confidence 4568888653 3333333444499999999964 267999943
No 120
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=68.84 E-value=3.3 Score=28.21 Aligned_cols=42 Identities=24% Similarity=0.494 Sum_probs=20.2
Q ss_pred ccccccccccCC------eeEEeC-CCCccChhhHHHHHhcCCCccccc
Q 024056 211 CTVCLEQVNVGE------IVRSLP-CLHQFHANCIDPWLRQQGTCPVCK 252 (273)
Q Consensus 211 C~ICle~~~~~~------~v~~lp-C~H~FH~~CI~~WL~~~~~CP~CR 252 (273)
|--|+..|..+. ....-| |++.||.+|=.--=++-.+||-|-
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcChhhhccccCCcCCC
Confidence 555666666541 334445 999999999322223445799883
No 121
>PLN02189 cellulose synthase
Probab=67.32 E-value=7.4 Score=41.78 Aligned_cols=50 Identities=24% Similarity=0.543 Sum_probs=35.5
Q ss_pred CCccccccccccc---cCCeeEEeC-CCCccChhhHHHHHh-cCCCccccccccc
Q 024056 207 DELTCTVCLEQVN---VGEIVRSLP-CLHQFHANCIDPWLR-QQGTCPVCKLRAG 256 (273)
Q Consensus 207 ~~~~C~ICle~~~---~~~~v~~lp-C~H~FH~~CI~~WL~-~~~~CP~CR~~v~ 256 (273)
....|.||-+++. .|+.-+... |+---|..|.+-=.+ .++.||-||+.+.
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 3457999999975 344444444 887789999844222 3667999999886
No 122
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=66.58 E-value=3.2 Score=40.46 Aligned_cols=36 Identities=25% Similarity=0.621 Sum_probs=29.5
Q ss_pred CCccccccccccccCCeeEEeCCCCccChhhHHHHHhc
Q 024056 207 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ 244 (273)
Q Consensus 207 ~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~ 244 (273)
....|-||.+.+.. ....+.|||.||..|+...+.+
T Consensus 69 ~~~~c~ic~~~~~~--~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 69 GDVQCGICVESYDG--EIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred ccccCCcccCCCcc--hhhhcCCCcHHHHHHHHHHhhh
Confidence 45579999999875 4466789999999999888864
No 123
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.45 E-value=2.8 Score=43.43 Aligned_cols=44 Identities=25% Similarity=0.499 Sum_probs=31.8
Q ss_pred CCcccccccccccc-C---CeeEEeCCCCccChhhHHHHHhcCCCcccc
Q 024056 207 DELTCTVCLEQVNV-G---EIVRSLPCLHQFHANCIDPWLRQQGTCPVC 251 (273)
Q Consensus 207 ~~~~C~ICle~~~~-~---~~v~~lpC~H~FH~~CI~~WL~~~~~CP~C 251 (273)
.+..|.-|.+.... + +.+..+.|||.||..|+.--..+++ |-.|
T Consensus 783 ~e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~~-~~~~ 830 (846)
T KOG2066|consen 783 VEERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLRNA-CNIE 830 (846)
T ss_pred ehhhhhhhcccccccCcccceeeEEEccchhhhcccccHHHhcc-cChh
Confidence 34479999988763 2 5678889999999999865544443 5555
No 124
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=64.97 E-value=11 Score=27.96 Aligned_cols=52 Identities=23% Similarity=0.539 Sum_probs=20.0
Q ss_pred CCcccccccccccc---CCeeEEe-CCCCccChhhHHHHHh-cCCCcccccccccCC
Q 024056 207 DELTCTVCLEQVNV---GEIVRSL-PCLHQFHANCIDPWLR-QQGTCPVCKLRAGSG 258 (273)
Q Consensus 207 ~~~~C~ICle~~~~---~~~v~~l-pC~H~FH~~CI~~WL~-~~~~CP~CR~~v~~~ 258 (273)
....|-||-+++-. |+....- -|+--.|..|.+-=.+ .++.||-|++++...
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr~ 64 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKRH 64 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B----
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcccc
Confidence 45579999998742 3332222 3777788999765443 367899999888543
No 125
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=64.81 E-value=2.7 Score=28.27 Aligned_cols=43 Identities=23% Similarity=0.660 Sum_probs=20.8
Q ss_pred ccccccccccccCCeeEEeCCCCccChhhHHHHHhcC-----CCccccccc
Q 024056 209 LTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQ-----GTCPVCKLR 254 (273)
Q Consensus 209 ~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~-----~~CP~CR~~ 254 (273)
..|+|....+..+ ++...|.|.-|.+ +..||... -.||+|.++
T Consensus 3 L~CPls~~~i~~P--~Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIP--VRGKNCKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSE--EEETT--SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeC--ccCCcCcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 4688888887744 5666699975433 45566432 259999763
No 126
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=62.29 E-value=9.9 Score=35.01 Aligned_cols=41 Identities=29% Similarity=0.525 Sum_probs=30.4
Q ss_pred CCCccccccccccccCCeeEEeC-CCCccChhhHHHHHhcCC
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLP-CLHQFHANCIDPWLRQQG 246 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lp-C~H~FH~~CI~~WL~~~~ 246 (273)
...+.|.+|.|.++...-|.+-. =.|.||..|-++-++++.
T Consensus 266 ~apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Qg 307 (352)
T KOG3579|consen 266 SAPLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQG 307 (352)
T ss_pred CCceeehhhhhhhccCceeecCCCcccceecccCHHHHHhhc
Confidence 34589999999998663332222 379999999999998754
No 128
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=61.96 E-value=3.9 Score=23.81 Aligned_cols=22 Identities=32% Similarity=0.620 Sum_probs=13.3
Q ss_pred cccccccccccCCeeEEeC-CCCcc
Q 024056 210 TCTVCLEQVNVGEIVRSLP-CLHQF 233 (273)
Q Consensus 210 ~C~ICle~~~~~~~v~~lp-C~H~F 233 (273)
+|+-|-..+... ...-| |||.|
T Consensus 2 ~CP~C~~~V~~~--~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPES--AKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhh--cCcCCCCCCCC
Confidence 477777776533 23345 77776
No 129
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=61.15 E-value=7.2 Score=36.49 Aligned_cols=56 Identities=18% Similarity=0.475 Sum_probs=39.9
Q ss_pred CccccccccccccCC-eeEEeCCCCccChhhHHHHHhcCCCcccccccccCCCCCCc
Q 024056 208 ELTCTVCLEQVNVGE-IVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSGWHETR 263 (273)
Q Consensus 208 ~~~C~ICle~~~~~~-~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v~~~~~~~~ 263 (273)
...|+||-+.....+ ...-.||++..|..|...-...+.+||.||+++..+.....
T Consensus 249 ~~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~~~t~~s~ 305 (327)
T KOG2068|consen 249 PPSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYERNTKKSE 305 (327)
T ss_pred CCCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCccccCccccc
Confidence 467999999874433 22233488888888887777788899999987766554443
No 130
>PLN02436 cellulose synthase A
Probab=61.08 E-value=12 Score=40.45 Aligned_cols=50 Identities=26% Similarity=0.533 Sum_probs=35.8
Q ss_pred CCccccccccccc---cCCeeEEeC-CCCccChhhHHHHHh-cCCCccccccccc
Q 024056 207 DELTCTVCLEQVN---VGEIVRSLP-CLHQFHANCIDPWLR-QQGTCPVCKLRAG 256 (273)
Q Consensus 207 ~~~~C~ICle~~~---~~~~v~~lp-C~H~FH~~CI~~WL~-~~~~CP~CR~~v~ 256 (273)
....|-||-+++. .||.-.... |+---|..|.+-=.+ .++.||-||+.+.
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 3457999999963 455544444 888899999844332 3667999999886
No 131
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=60.60 E-value=3 Score=38.53 Aligned_cols=50 Identities=26% Similarity=0.576 Sum_probs=39.8
Q ss_pred CCCccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCcccccccccC
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGS 257 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v~~ 257 (273)
.+...|.||...+..+. +.-.|.|.|+..|-..|....+.||.|+.....
T Consensus 103 ~~~~~~~~~~g~l~vpt--~~qg~w~qf~~~~p~~~~~~~~~~~d~~~~~~p 152 (324)
T KOG0824|consen 103 QDHDICYICYGKLTVPT--RIQGCWHQFCYVCPKSNFAMGNDCPDCRGKISP 152 (324)
T ss_pred CCccceeeeeeeEEecc--cccCceeeeeecCCchhhhhhhccchhhcCcCc
Confidence 34568999999988662 123399999999999999999999999876543
No 132
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=60.15 E-value=5.2 Score=28.68 Aligned_cols=11 Identities=45% Similarity=1.271 Sum_probs=8.4
Q ss_pred cChhhHHHHHh
Q 024056 233 FHANCIDPWLR 243 (273)
Q Consensus 233 FH~~CI~~WL~ 243 (273)
||..|+.+|+.
T Consensus 12 FCRNCLskWy~ 22 (68)
T PF06844_consen 12 FCRNCLSKWYR 22 (68)
T ss_dssp --HHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999986
No 133
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=59.56 E-value=5.3 Score=28.18 Aligned_cols=36 Identities=11% Similarity=0.316 Sum_probs=18.0
Q ss_pred CCccccccccccccCCeeEE-eCCCCccChhhHHHHH
Q 024056 207 DELTCTVCLEQVNVGEIVRS-LPCLHQFHANCIDPWL 242 (273)
Q Consensus 207 ~~~~C~ICle~~~~~~~v~~-lpC~H~FH~~CI~~WL 242 (273)
+...|.+|...|.--..-.. -.||++||..|.....
T Consensus 8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 8 EASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRI 44 (69)
T ss_dssp G-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEE
T ss_pred CCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEE
Confidence 45689999999964322222 3499999999976543
No 134
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=59.33 E-value=5.5 Score=26.23 Aligned_cols=43 Identities=26% Similarity=0.709 Sum_probs=29.6
Q ss_pred ccccccccccCCeeEEeCCCCccChhhHHHHHh------cCCCcccccc
Q 024056 211 CTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLR------QQGTCPVCKL 253 (273)
Q Consensus 211 C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~------~~~~CP~CR~ 253 (273)
|.||...-..++.+.--.|+..||..|+..=.. ..-.||.|+.
T Consensus 2 C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 2 CPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp BTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred CcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 888988555555555556999999999865433 1336888853
No 135
>PF11241 DUF3043: Protein of unknown function (DUF3043); InterPro: IPR021403 Some members in this family of proteins with unknown function are annotated as membrane proteins. This cannot be confirmed.
Probab=57.75 E-value=13 Score=31.74 Aligned_cols=18 Identities=33% Similarity=0.285 Sum_probs=10.7
Q ss_pred CCCccccccc--CCcccCcc
Q 024056 20 IPERRTVRIH--AGRPVNSN 37 (273)
Q Consensus 20 ~~~~~~~~~~--~~~~~~~~ 37 (273)
-|+|+.+|-- .-+.++.-
T Consensus 61 GP~Rr~vRD~VDsR~~i~e~ 80 (170)
T PF11241_consen 61 GPVRRYVRDYVDSRRNIGEF 80 (170)
T ss_pred cchhhhhhhhhhcccchHHH
Confidence 3788888855 44444433
No 136
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=56.42 E-value=15 Score=29.10 Aligned_cols=44 Identities=18% Similarity=0.251 Sum_probs=31.9
Q ss_pred ccccccccccccCC----------eeE-EeCCCCccChhhHHHHHhcCCCccccc
Q 024056 209 LTCTVCLEQVNVGE----------IVR-SLPCLHQFHANCIDPWLRQQGTCPVCK 252 (273)
Q Consensus 209 ~~C~ICle~~~~~~----------~v~-~lpC~H~FH~~CI~~WL~~~~~CP~CR 252 (273)
..|--|+..|.... ... ...|++.||.+|=.-+-..-..||-|.
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 35999999886431 112 234999999999777767777899995
No 137
>PF07123 PsbW: Photosystem II reaction centre W protein (PsbW); InterPro: IPR009806 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbW found in PSII, where it is a subunit of the oxygen-evolving complex. PsbW appears to have several roles, including guiding PSII biogenesis and assembly, stabilising dimeric PSII [], and facilitating PSII repair after photo-inhibition []. There appears to be two classes of PsbW, class 1 being found predominantly in algae and cyanobacteria, and class 2 being found predominantly in plants. This entry represents class 2 PsbW.; GO: 0015979 photosynthesis, 0009507 chloroplast, 0009523 photosystem II
Probab=56.11 E-value=9.9 Score=31.16 Aligned_cols=26 Identities=46% Similarity=0.660 Sum_probs=22.2
Q ss_pred cCchhHHHHHHHHHHHHHhhhhhHHH
Q 024056 56 QMSSNFLLWIVLGIFLLATSLRMYAT 81 (273)
Q Consensus 56 ~~~~~~~~~~~~~~~~~a~~l~~y~~ 81 (273)
-++-|.|-||++|||.+.-+|+..++
T Consensus 100 Glsn~~LgwIL~gVf~lIWslY~~~~ 125 (138)
T PF07123_consen 100 GLSNNLLGWILLGVFGLIWSLYFVYT 125 (138)
T ss_pred cccCchhHHHHHHHHHHHHHHHHhhc
Confidence 47889999999999999988876655
No 138
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.17 E-value=11 Score=34.13 Aligned_cols=35 Identities=14% Similarity=0.109 Sum_probs=29.6
Q ss_pred CCCccccccccccccCCeeEEeCCCCccChhhHHHHHh
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLR 243 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~ 243 (273)
.+-+.|+.||..+..+ .+.|=||.|+.+||-+.+-
T Consensus 41 K~FdcCsLtLqPc~dP---vit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 41 KPFDCCSLTLQPCRDP---VITPDGYLFDREAILEYIL 75 (303)
T ss_pred CCcceeeeecccccCC---ccCCCCeeeeHHHHHHHHH
Confidence 4566899999999877 6788899999999988763
No 139
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.90 E-value=11 Score=34.18 Aligned_cols=58 Identities=14% Similarity=0.123 Sum_probs=38.9
Q ss_pred CCccccccccccccCC-eeEEeCCCCccChhhHHHHHhcCCCcccccccccCCCCCCcccc
Q 024056 207 DELTCTVCLEQVNVGE-IVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSGWHETRQVE 266 (273)
Q Consensus 207 ~~~~C~ICle~~~~~~-~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v~~~~~~~~~~~ 266 (273)
....|+|---++.... -+...+|||+|-..-+.+. ...+|++|-+.+.+.......++
T Consensus 110 a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y~~~dvIvlNg~ 168 (293)
T KOG3113|consen 110 ARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAYQEDDVIVLNGT 168 (293)
T ss_pred ceeecccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCcccccCeEeeCCC
Confidence 4567887655544221 2345679999998877664 36789999998877665544444
No 140
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=52.80 E-value=10 Score=35.55 Aligned_cols=44 Identities=20% Similarity=0.396 Sum_probs=29.8
Q ss_pred cccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCcccccc
Q 024056 210 TCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKL 253 (273)
Q Consensus 210 ~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~ 253 (273)
.|-.|.+........+.-.|.+.||.+|=.---.+-..||-|..
T Consensus 332 ~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~iHesLh~CpgCeh 375 (378)
T KOG2807|consen 332 FCFACQGELLSSGRYRCESCKNVFCLDCDVFIHESLHNCPGCEH 375 (378)
T ss_pred ceeeeccccCCCCcEEchhccceeeccchHHHHhhhhcCCCcCC
Confidence 37777666665545555559999999994433344567999963
No 141
>COG5416 Uncharacterized integral membrane protein [Function unknown]
Probab=51.74 E-value=44 Score=25.82 Aligned_cols=26 Identities=23% Similarity=0.554 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHhccCcCchhHHHHH
Q 024056 40 AFLVTVLLLFMILNSHQMSSNFLLWI 65 (273)
Q Consensus 40 ~~l~~~~~~~~~~~~~~~~~~~~~~~ 65 (273)
++++.++++|.+.|...++-||+.|.
T Consensus 31 ilillLllifav~Nt~~V~~~~lfg~ 56 (98)
T COG5416 31 ILILLLLLIFAVINTDSVEFNYLFGQ 56 (98)
T ss_pred HHHHHHHHHHHHhccCceEEEeecch
Confidence 34455566888999999999999886
No 142
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=50.99 E-value=19 Score=21.48 Aligned_cols=36 Identities=25% Similarity=0.539 Sum_probs=22.3
Q ss_pred ccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCcccccccc
Q 024056 211 CTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRA 255 (273)
Q Consensus 211 C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v 255 (273)
|..|-+.+...+.... .=+..||.+| ..|..|+..+
T Consensus 2 C~~C~~~i~~~~~~~~-~~~~~~H~~C--------f~C~~C~~~L 37 (39)
T smart00132 2 CAGCGKPIRGGELVLR-ALGKVWHPEC--------FKCSKCGKPL 37 (39)
T ss_pred ccccCCcccCCcEEEE-eCCccccccC--------CCCcccCCcC
Confidence 7778777765423222 2467788877 3577776654
No 143
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=48.91 E-value=9.2 Score=34.86 Aligned_cols=48 Identities=25% Similarity=0.613 Sum_probs=33.2
Q ss_pred CccccccccccccCCeeEE-e--C-CCCccChhhHHHHHhc---------CCCcccccccc
Q 024056 208 ELTCTVCLEQVNVGEIVRS-L--P-CLHQFHANCIDPWLRQ---------QGTCPVCKLRA 255 (273)
Q Consensus 208 ~~~C~ICle~~~~~~~v~~-l--p-C~H~FH~~CI~~WL~~---------~~~CP~CR~~v 255 (273)
...|-+|..++.+.+..+. - + |.-.+|..|+..-+.. ...||.|++.+
T Consensus 182 ~~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~ 242 (276)
T KOG3005|consen 182 NVECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFL 242 (276)
T ss_pred chhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhcee
Confidence 3579999999954443322 1 2 8889999999884432 34699998743
No 144
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=47.71 E-value=6.9 Score=36.97 Aligned_cols=48 Identities=25% Similarity=0.515 Sum_probs=28.4
Q ss_pred CCCccccccccccccCCeeEEeC---CCCcc--------ChhhHHHHH-----hcCCCccccccc
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLP---CLHQF--------HANCIDPWL-----RQQGTCPVCKLR 254 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lp---C~H~F--------H~~CI~~WL-----~~~~~CP~CR~~ 254 (273)
..++.|++|-+.+..-. ...+. |.-.| |..|+..-- .+.+.||.||+.
T Consensus 13 dl~ElCPVCGDkVSGYH-YGLLTCESCKGFFKRTVQNnK~YtC~e~qnC~iDkTqRKRCP~CRFQ 76 (475)
T KOG4218|consen 13 DLGELCPVCGDKVSGYH-YGLLTCESCKGFFKRTVQNNKQYTCSEEQNCHIDKTQRKRCPSCRFQ 76 (475)
T ss_pred ccccccccccCccccce-eeeeehhhhhhHHHHHhhcCcceecccccccccchHhhccCCchhHH
Confidence 35667999988876322 22333 55555 555654421 124579999974
No 145
>PLN00077 photosystem II reaction centre W protein; Provisional
Probab=46.71 E-value=14 Score=29.60 Aligned_cols=26 Identities=46% Similarity=0.622 Sum_probs=21.5
Q ss_pred cCchhHHHHHHHHHHHHHhhhhhHHH
Q 024056 56 QMSSNFLLWIVLGIFLLATSLRMYAT 81 (273)
Q Consensus 56 ~~~~~~~~~~~~~~~~~a~~l~~y~~ 81 (273)
-++.|.|-|+++|||-+.-+++.+++
T Consensus 89 Glsn~~LgwIL~gVf~liw~ly~~~~ 114 (128)
T PLN00077 89 GLSNNLLGWILLGVFGLIWSLYTTYT 114 (128)
T ss_pred cccCchhhHHHHhHHHHHHHHHhhee
Confidence 46889999999999999887766554
No 146
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=46.05 E-value=2 Score=31.18 Aligned_cols=40 Identities=20% Similarity=0.458 Sum_probs=19.5
Q ss_pred ccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCccccccccc
Q 024056 209 LTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAG 256 (273)
Q Consensus 209 ~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v~ 256 (273)
..|+.|...+.... +|++|..|-.. +.....||-|..++.
T Consensus 2 ~~CP~C~~~L~~~~-------~~~~C~~C~~~-~~~~a~CPdC~~~Le 41 (70)
T PF07191_consen 2 NTCPKCQQELEWQG-------GHYHCEACQKD-YKKEAFCPDCGQPLE 41 (70)
T ss_dssp -B-SSS-SBEEEET-------TEEEETTT--E-EEEEEE-TTT-SB-E
T ss_pred CcCCCCCCccEEeC-------CEEECcccccc-ceecccCCCcccHHH
Confidence 36888888765321 56666666543 344556888876553
No 147
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=46.02 E-value=22 Score=33.30 Aligned_cols=51 Identities=22% Similarity=0.500 Sum_probs=33.2
Q ss_pred CCccccccccccc---------------cCC-eeEEeCCCCccChhhHHHHHhc---------CCCcccccccccC
Q 024056 207 DELTCTVCLEQVN---------------VGE-IVRSLPCLHQFHANCIDPWLRQ---------QGTCPVCKLRAGS 257 (273)
Q Consensus 207 ~~~~C~ICle~~~---------------~~~-~v~~lpC~H~FH~~CI~~WL~~---------~~~CP~CR~~v~~ 257 (273)
.+.+|++|+..=. .|- ...-.||||.--.+-..-|-+. +..||.|-+.+..
T Consensus 340 ~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 340 RERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred ccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 4568999987521 010 1123479998888888888753 4469999776643
No 148
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=45.46 E-value=11 Score=23.58 Aligned_cols=25 Identities=32% Similarity=0.671 Sum_probs=15.5
Q ss_pred cccccccccccCCe--------eEEeCCCCccC
Q 024056 210 TCTVCLEQVNVGEI--------VRSLPCLHQFH 234 (273)
Q Consensus 210 ~C~ICle~~~~~~~--------v~~lpC~H~FH 234 (273)
.|+=|...|..+|. +....|+|.|+
T Consensus 4 ~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 4 TCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVFF 36 (36)
T ss_pred ECCCCCCEEeCCHHHCCCCCcEEECCCCCCEeC
Confidence 57788877765542 33344777764
No 149
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=45.44 E-value=32 Score=37.12 Aligned_cols=50 Identities=26% Similarity=0.472 Sum_probs=35.2
Q ss_pred CCccccccccccc---cCCeeEEeC-CCCccChhhHHHHHh-cCCCccccccccc
Q 024056 207 DELTCTVCLEQVN---VGEIVRSLP-CLHQFHANCIDPWLR-QQGTCPVCKLRAG 256 (273)
Q Consensus 207 ~~~~C~ICle~~~---~~~~v~~lp-C~H~FH~~CI~~WL~-~~~~CP~CR~~v~ 256 (273)
....|-||=+++. .||.-.... |+---|..|.+-=.+ .++.||.|++.+.
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 4567999999974 344443334 777799999843222 3667999999886
No 150
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=45.14 E-value=7.1 Score=26.38 Aligned_cols=14 Identities=21% Similarity=0.524 Sum_probs=10.2
Q ss_pred CccccccccccccC
Q 024056 208 ELTCTVCLEQVNVG 221 (273)
Q Consensus 208 ~~~C~ICle~~~~~ 221 (273)
...||.|-+.+...
T Consensus 2 ~f~CP~C~~~~~~~ 15 (54)
T PF05605_consen 2 SFTCPYCGKGFSES 15 (54)
T ss_pred CcCCCCCCCccCHH
Confidence 45799999876644
No 151
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=44.73 E-value=7.3 Score=37.42 Aligned_cols=45 Identities=24% Similarity=0.479 Sum_probs=0.0
Q ss_pred Ccccccccccccc-----------CCeeEEeCCCCccChhhHHHHHhc------CCCcccccccc
Q 024056 208 ELTCTVCLEQVNV-----------GEIVRSLPCLHQFHANCIDPWLRQ------QGTCPVCKLRA 255 (273)
Q Consensus 208 ~~~C~ICle~~~~-----------~~~v~~lpC~H~FH~~CI~~WL~~------~~~CP~CR~~v 255 (273)
-..|++=|..+.- .+...-+.|||++..+ .|-.. ..+||+||..-
T Consensus 277 rpQCPVglnTL~fp~~~~~~~~~~~qP~VYl~CGHVhG~h---~Wg~~~~~~~~~r~CPlCr~~g 338 (416)
T PF04710_consen 277 RPQCPVGLNTLVFPSKSRKDVPDERQPWVYLNCGHVHGYH---NWGQDSDRDPRSRTCPLCRQVG 338 (416)
T ss_dssp -----------------------------------------------------------------
T ss_pred CCCCCcCCCccccccccccccccccCceeeccccceeeec---ccccccccccccccCCCccccC
Confidence 3467776555422 1234457799987654 46532 45799998743
No 152
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the KOG3726 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.94 E-value=10 Score=38.75 Aligned_cols=61 Identities=21% Similarity=0.406 Sum_probs=36.9
Q ss_pred ccccccccccc-cCCeeEEeCCCCccChhhHHHHHhcCCCcccccccccCCCCCCcccccccCCC
Q 024056 209 LTCTVCLEQVN-VGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSGWHETRQVEMDASYM 272 (273)
Q Consensus 209 ~~C~ICle~~~-~~~~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v~~~~~~~~~~~~~~~~~ 272 (273)
.+|.+|...=. +.+..+.+.|+-.||..| |+.-.+.||+|--...-.......+..+-+||
T Consensus 655 r~C~vcq~pedse~~v~rt~~C~~~~C~~c---~~~~~~~~~vC~~~~~~s~~a~~~s~~~~~y~ 716 (717)
T KOG3726|consen 655 RTCKVCQLPEDSETDVCRTTFCYTPYCVAC---SLDYASISEVCGPDAAISYTAAVASILVVGYM 716 (717)
T ss_pred HHHHHhcCCcCccccccCccccCCcchHhh---hhhhhccCcccCchhhhhhhhhhhhhhhhhcC
Confidence 36888876544 333445566999999998 55568889999443333333333334444444
No 154
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=42.84 E-value=17 Score=34.08 Aligned_cols=46 Identities=20% Similarity=0.329 Sum_probs=35.0
Q ss_pred CCCccccccccccccCCeeEEeCCCCccChhhHHHHHhc---CCCcccc
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ---QGTCPVC 251 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~---~~~CP~C 251 (273)
..-..||+=-+.-...++...+.|||+.-..-+++.-+. ...||.|
T Consensus 334 Hs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYC 382 (396)
T COG5109 334 HSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYC 382 (396)
T ss_pred cceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCC
Confidence 456689987777666667778889999999999885443 2359999
No 155
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=41.41 E-value=38 Score=29.47 Aligned_cols=22 Identities=23% Similarity=0.234 Sum_probs=11.3
Q ss_pred ccccc-CCcccCcchhHHHHHHH
Q 024056 25 TVRIH-AGRPVNSNSLAFLVTVL 46 (273)
Q Consensus 25 ~~~~~-~~~~~~~~~~~~l~~~~ 46 (273)
.+|.| +++.-...-..+|+.++
T Consensus 34 YtRLHAATKa~TLGv~LILlgv~ 56 (197)
T PRK12585 34 YTRTHAAGISNTFGVSLLLFATV 56 (197)
T ss_pred HHHhhccccchhhhHHHHHHHHH
Confidence 57999 55554444333333333
No 156
>PLN02400 cellulose synthase
Probab=41.08 E-value=31 Score=37.38 Aligned_cols=50 Identities=22% Similarity=0.542 Sum_probs=34.0
Q ss_pred CCccccccccccc---cCCeeEEeC-CCCccChhhHHH-HHhcCCCccccccccc
Q 024056 207 DELTCTVCLEQVN---VGEIVRSLP-CLHQFHANCIDP-WLRQQGTCPVCKLRAG 256 (273)
Q Consensus 207 ~~~~C~ICle~~~---~~~~v~~lp-C~H~FH~~CI~~-WL~~~~~CP~CR~~v~ 256 (273)
....|-||=+++. .||.-.... |+---|..|.+- .-..++.||-||+.+.
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 4458999999974 344433333 777789999732 1123667999999886
No 157
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=40.61 E-value=20 Score=24.00 Aligned_cols=34 Identities=15% Similarity=0.334 Sum_probs=23.5
Q ss_pred ccccccccccccCCeeE-EeCCCCccChhhHHHHH
Q 024056 209 LTCTVCLEQVNVGEIVR-SLPCLHQFHANCIDPWL 242 (273)
Q Consensus 209 ~~C~ICle~~~~~~~v~-~lpC~H~FH~~CI~~WL 242 (273)
..|.+|-..|..-..-. .-.||++||..|.....
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~ 37 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRI 37 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCee
Confidence 36899988887532222 23499999999976654
No 158
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=40.18 E-value=18 Score=30.42 Aligned_cols=53 Identities=17% Similarity=0.414 Sum_probs=34.9
Q ss_pred cccccccccCCeeEEeC-CCCccChhhHHHHHhcCCCcccccccccCCCCCCccccc
Q 024056 212 TVCLEQVNVGEIVRSLP-CLHQFHANCIDPWLRQQGTCPVCKLRAGSGWHETRQVEM 267 (273)
Q Consensus 212 ~ICle~~~~~~~v~~lp-C~H~FH~~CI~~WL~~~~~CP~CR~~v~~~~~~~~~~~~ 267 (273)
.||+..=...+..-.-| =.+.||.+|-.+-+. .||.|..++.-..+.+..-..
T Consensus 8 qiC~NGH~~t~~~~~~p~~~~~fC~kCG~~tI~---~Cp~C~~~IrG~y~v~gv~~~ 61 (158)
T PF10083_consen 8 QICLNGHVITDSYDKNPELREKFCSKCGAKTIT---SCPNCSTPIRGDYHVEGVFGL 61 (158)
T ss_pred HHccCccccccccccCchHHHHHHHHhhHHHHH---HCcCCCCCCCCceecCCeeee
Confidence 36666544443333333 456799999877543 599999999888777655443
No 159
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=39.02 E-value=44 Score=36.26 Aligned_cols=50 Identities=22% Similarity=0.467 Sum_probs=34.7
Q ss_pred CCccccccccccc---cCCeeEEeC-CCCccChhhHHHH-HhcCCCccccccccc
Q 024056 207 DELTCTVCLEQVN---VGEIVRSLP-CLHQFHANCIDPW-LRQQGTCPVCKLRAG 256 (273)
Q Consensus 207 ~~~~C~ICle~~~---~~~~v~~lp-C~H~FH~~CI~~W-L~~~~~CP~CR~~v~ 256 (273)
....|-||=+++. .||.-.... |+---|..|.+-= -..++.||-|++.+.
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 4458999999974 344433333 7777899998432 233668999999886
No 160
>PLN00092 photosystem I reaction center subunit V (PsaG); Provisional
Probab=38.71 E-value=17 Score=29.36 Aligned_cols=26 Identities=46% Similarity=0.660 Sum_probs=21.6
Q ss_pred cCchhHHHHHHHHHHHHHhhhhhHHH
Q 024056 56 QMSSNFLLWIVLGIFLLATSLRMYAT 81 (273)
Q Consensus 56 ~~~~~~~~~~~~~~~~~a~~l~~y~~ 81 (273)
-++.|.|-|+++|||.+.-+++.+++
T Consensus 99 Glsn~~LgwIL~gVf~lIWslYf~~~ 124 (137)
T PLN00092 99 GLSNNLLGWILLGVFGLIWSLYFVYT 124 (137)
T ss_pred cccCcchhhHHHhHHHHHHHHHheee
Confidence 46889999999999999887766554
No 161
>COG4847 Uncharacterized protein conserved in archaea [Function unknown]
Probab=37.84 E-value=33 Score=26.40 Aligned_cols=36 Identities=22% Similarity=0.352 Sum_probs=29.3
Q ss_pred CccccccccccccCCeeEEeCCCCccChhhHHHHHhc
Q 024056 208 ELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ 244 (273)
Q Consensus 208 ~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~ 244 (273)
..+|.||-..+..|+..+-++ .-.-|.+|+.+-.++
T Consensus 6 ewkC~VCg~~iieGqkFTF~~-kGsVH~eCl~~s~~~ 41 (103)
T COG4847 6 EWKCYVCGGTIIEGQKFTFTK-KGSVHYECLAESKRK 41 (103)
T ss_pred eeeEeeeCCEeeeccEEEEee-CCcchHHHHHHHHhc
Confidence 457999999999999888888 556899998775544
No 162
>PF05814 DUF843: Baculovirus protein of unknown function (DUF843); InterPro: IPR008561 This family consists of several unidentified baculovirus proteins of around 85 residues long with no known function.
Probab=37.36 E-value=1.1e+02 Score=22.95 Aligned_cols=33 Identities=15% Similarity=0.307 Sum_probs=21.6
Q ss_pred HHHHhccCcCchhHHHHHHHHHHHHHhhhhhHH
Q 024056 48 LFMILNSHQMSSNFLLWIVLGIFLLATSLRMYA 80 (273)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~y~ 80 (273)
+-.+++---...++++.+++.+.++...|++|.
T Consensus 13 ~~fi~~k~~~~s~li~~~LilfviF~~~L~~yy 45 (83)
T PF05814_consen 13 LGFIFDKNEGFSELIITLLILFVIFFCVLQVYY 45 (83)
T ss_pred HHHHHccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 334454444556777777777777777888873
No 163
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=37.01 E-value=19 Score=22.54 Aligned_cols=25 Identities=36% Similarity=0.651 Sum_probs=15.5
Q ss_pred cccccccccccCCe--------eEEeCCCCccC
Q 024056 210 TCTVCLEQVNVGEI--------VRSLPCLHQFH 234 (273)
Q Consensus 210 ~C~ICle~~~~~~~--------v~~lpC~H~FH 234 (273)
+|+-|...|..++. ++.-.|+|.|.
T Consensus 4 ~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 4 TCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred ECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 58888888865542 22333777764
No 164
>PLN00082 photosystem II reaction centre W protein (PsbW); Provisional
Probab=35.91 E-value=32 Score=24.48 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=18.2
Q ss_pred cCchhHHHHHHHHHHHHHhhhhhH
Q 024056 56 QMSSNFLLWIVLGIFLLATSLRMY 79 (273)
Q Consensus 56 ~~~~~~~~~~~~~~~~~a~~l~~y 79 (273)
-++.+.|-|+++|||.+.-+++..
T Consensus 28 Gls~~~LgwIL~gvf~liw~ly~~ 51 (67)
T PLN00082 28 GVSNGKLTWILVGVTALIWALYFS 51 (67)
T ss_pred cccCchhhhHHHHHHHHHHHHHhh
Confidence 356788899999998887766544
No 165
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=35.17 E-value=49 Score=22.98 Aligned_cols=44 Identities=25% Similarity=0.593 Sum_probs=28.5
Q ss_pred cccccccccccCCeeEEeCCC--CccChhhHHHHHhcCCCccccccccc
Q 024056 210 TCTVCLEQVNVGEIVRSLPCL--HQFHANCIDPWLRQQGTCPVCKLRAG 256 (273)
Q Consensus 210 ~C~ICle~~~~~~~v~~lpC~--H~FH~~CI~~WL~~~~~CP~CR~~v~ 256 (273)
.|-.|-.++..+.. -..-|. ..||.+|.+.-| +..||.|--.+.
T Consensus 7 nCE~C~~dLp~~s~-~A~ICSfECTFC~~C~e~~l--~~~CPNCgGelv 52 (57)
T PF06906_consen 7 NCECCDKDLPPDSP-EAYICSFECTFCADCAETML--NGVCPNCGGELV 52 (57)
T ss_pred CccccCCCCCCCCC-cceEEeEeCcccHHHHHHHh--cCcCcCCCCccc
Confidence 46666667664431 112243 469999998876 788999966543
No 166
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=34.74 E-value=32 Score=26.38 Aligned_cols=31 Identities=26% Similarity=0.724 Sum_probs=22.1
Q ss_pred CccccccccccccCCeeEEeC--CCCccChhhHHH
Q 024056 208 ELTCTVCLEQVNVGEIVRSLP--CLHQFHANCIDP 240 (273)
Q Consensus 208 ~~~C~ICle~~~~~~~v~~lp--C~H~FH~~CI~~ 240 (273)
...|.||... .|-.+..-. |...||..|...
T Consensus 55 ~~~C~iC~~~--~G~~i~C~~~~C~~~fH~~CA~~ 87 (110)
T PF13832_consen 55 KLKCSICGKS--GGACIKCSHPGCSTAFHPTCARK 87 (110)
T ss_pred CCcCcCCCCC--CceeEEcCCCCCCcCCCHHHHHH
Confidence 4589999998 343333333 888999999855
No 167
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=34.29 E-value=87 Score=21.97 Aligned_cols=17 Identities=24% Similarity=0.534 Sum_probs=10.6
Q ss_pred cchhHHHHHHHHHHHHh
Q 024056 36 SNSLAFLVTVLLLFMIL 52 (273)
Q Consensus 36 ~~~~~~l~~~~~~~~~~ 52 (273)
..+.++|++++.+|.-|
T Consensus 9 mtriVLLISfiIlfgRl 25 (59)
T PF11119_consen 9 MTRIVLLISFIILFGRL 25 (59)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34566677766666655
No 168
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=34.15 E-value=5.6 Score=36.47 Aligned_cols=48 Identities=17% Similarity=0.232 Sum_probs=19.9
Q ss_pred CCccccccccccccCCeeEEe--CCCCccChhhHHHHHhcCCCccccccc
Q 024056 207 DELTCTVCLEQVNVGEIVRSL--PCLHQFHANCIDPWLRQQGTCPVCKLR 254 (273)
Q Consensus 207 ~~~~C~ICle~~~~~~~v~~l--pC~H~FH~~CI~~WL~~~~~CP~CR~~ 254 (273)
....||||=..-..+.....- .-.|.+|.-|-.+|--....||.|-..
T Consensus 171 ~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~ 220 (290)
T PF04216_consen 171 QRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNT 220 (290)
T ss_dssp T-SS-TTT---EEEEEEE------EEEEEETTT--EEE--TTS-TTT---
T ss_pred cCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCCC
Confidence 346899997764322111000 013457778888897777789999443
No 169
>KOG4430 consensus Topoisomerase I-binding arginine-serine-rich protein [Transcription]
Probab=33.92 E-value=16 Score=36.53 Aligned_cols=60 Identities=20% Similarity=0.240 Sum_probs=50.6
Q ss_pred CCCCccccccccccccCCeeEEeC-CCCccChhhHHHHHhcCCCcccccccccCCCCCCcc
Q 024056 205 TEDELTCTVCLEQVNVGEIVRSLP-CLHQFHANCIDPWLRQQGTCPVCKLRAGSGWHETRQ 264 (273)
Q Consensus 205 ~~~~~~C~ICle~~~~~~~v~~lp-C~H~FH~~CI~~WL~~~~~CP~CR~~v~~~~~~~~~ 264 (273)
.+....|.+|+......+....+. |.|.++..|+..|=.....|+.|++.+...+.+..+
T Consensus 257 q~~~~~~~~~~~~~~~~eqk~l~~~~~~~~g~tsl~~e~~~~~v~~~~~tk~~~~~~e~r~ 317 (553)
T KOG4430|consen 257 QENKNACGLCLSEADAKEQKGLEGNNQRQTGATSLMEEEAVESVCPLRVTKVRTISKEARQ 317 (553)
T ss_pred hhcccchhhchhhHhHHHhhhhhhcccchhhhhhhhhhhhhhhhhhccccccccccccccc
Confidence 345668999999987766666666 789999999999988899999999999888887776
No 170
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.82 E-value=19 Score=27.53 Aligned_cols=12 Identities=42% Similarity=1.204 Sum_probs=10.7
Q ss_pred cChhhHHHHHhc
Q 024056 233 FHANCIDPWLRQ 244 (273)
Q Consensus 233 FH~~CI~~WL~~ 244 (273)
||..|+..|++-
T Consensus 43 FCRNCLs~Wy~e 54 (104)
T COG3492 43 FCRNCLSNWYRE 54 (104)
T ss_pred HHHHHHHHHHHH
Confidence 999999999864
No 171
>PF15052 TMEM169: TMEM169 protein family
Probab=33.41 E-value=52 Score=26.68 Aligned_cols=33 Identities=27% Similarity=0.359 Sum_probs=27.6
Q ss_pred cCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 024056 56 QMSSNFLLWIVLGIFLLATSLRMYATCQQLHAQ 88 (273)
Q Consensus 56 ~~~~~~~~~~~~~~~~~a~~l~~y~~~~q~q~~ 88 (273)
-+.|-+.++-.+.+.+++.+|..||..+|+-.+
T Consensus 61 ~~cPlLIl~YP~lIv~~t~~LglYaa~~QlSw~ 93 (133)
T PF15052_consen 61 TVCPLLILFYPFLIVLVTLSLGLYAAFVQLSWS 93 (133)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHhhheeee
Confidence 466777777788888999999999999998764
No 172
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=32.74 E-value=47 Score=21.98 Aligned_cols=40 Identities=25% Similarity=0.425 Sum_probs=24.3
Q ss_pred ccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCcccccccccCCC
Q 024056 211 CTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSGW 259 (273)
Q Consensus 211 C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v~~~~ 259 (273)
|..|-..+..++.+. ..-+..||.+| .+|-.|+..+..+.
T Consensus 1 C~~C~~~I~~~~~~~-~~~~~~~H~~C--------f~C~~C~~~l~~~~ 40 (58)
T PF00412_consen 1 CARCGKPIYGTEIVI-KAMGKFWHPEC--------FKCSKCGKPLNDGD 40 (58)
T ss_dssp BTTTSSBESSSSEEE-EETTEEEETTT--------SBETTTTCBTTTSS
T ss_pred CCCCCCCccCcEEEE-EeCCcEEEccc--------cccCCCCCccCCCe
Confidence 556666666443332 23566788776 36777877776554
No 173
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=31.53 E-value=44 Score=26.03 Aligned_cols=25 Identities=20% Similarity=0.511 Sum_probs=18.9
Q ss_pred CCccChhhHHHHHhc---------CCCccccccc
Q 024056 230 LHQFHANCIDPWLRQ---------QGTCPVCKLR 254 (273)
Q Consensus 230 ~H~FH~~CI~~WL~~---------~~~CP~CR~~ 254 (273)
.=.||..||..++.. +-.||.||..
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crgi 70 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGI 70 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCCe
Confidence 667999999888743 2359999873
No 174
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=31.07 E-value=28 Score=21.08 Aligned_cols=10 Identities=40% Similarity=0.909 Sum_probs=7.0
Q ss_pred cCCCcccccc
Q 024056 244 QQGTCPVCKL 253 (273)
Q Consensus 244 ~~~~CP~CR~ 253 (273)
....||+|..
T Consensus 16 ~~~~CP~Cg~ 25 (33)
T cd00350 16 APWVCPVCGA 25 (33)
T ss_pred CCCcCcCCCC
Confidence 3447999965
No 175
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=29.94 E-value=38 Score=31.78 Aligned_cols=44 Identities=9% Similarity=-0.143 Sum_probs=32.5
Q ss_pred CCccccccccccccCCeeEEeCCCC-ccChhhHHHHHhcCCCcccccccc
Q 024056 207 DELTCTVCLEQVNVGEIVRSLPCLH-QFHANCIDPWLRQQGTCPVCKLRA 255 (273)
Q Consensus 207 ~~~~C~ICle~~~~~~~v~~lpC~H-~FH~~CI~~WL~~~~~CP~CR~~v 255 (273)
...+|-.|-+..... ...+|+| .||.+|.. +.-..+||+|....
T Consensus 342 s~~~~~~~~~~~~st---~~~~~~~n~~~~~~a~--~s~~~~~~~c~~~~ 386 (394)
T KOG2113|consen 342 SSLKGTSAGFGLLST---IWSGGNMNLSPGSLAS--ASASPTSSTCDHND 386 (394)
T ss_pred hhcccccccCceeee---EeecCCcccChhhhhh--cccCCccccccccc
Confidence 345788887776544 4567998 68999987 66788999997644
No 176
>PF05715 zf-piccolo: Piccolo Zn-finger; InterPro: IPR008899 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This (predicted) zinc finger is found in the bassoon and piccolo proteins, both of which are components of the presynaptic cytoskeletal matrix (PCM) assembled at the active zone of neurotransmitter release, where Piccolo plays a role in the trafficking of synaptic vesicles (SVs) [, , ]. The Piccolo zinc fingers were found to interact with the dual prenylated rab3A and VAMP2/Synaptobrevin II receptor PRA1. There are eight conserved cysteines in Piccolo-type zinc fingers, suggesting that they coordinates two zinc ligands. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding, 0045202 synapse
Probab=29.31 E-value=37 Score=23.89 Aligned_cols=16 Identities=31% Similarity=0.766 Sum_probs=10.1
Q ss_pred CCCcccccccccCCCC
Q 024056 245 QGTCPVCKLRAGSGWH 260 (273)
Q Consensus 245 ~~~CP~CR~~v~~~~~ 260 (273)
+..||+|+.....+..
T Consensus 2 k~~CPlCkt~~n~gsk 17 (61)
T PF05715_consen 2 KSLCPLCKTTLNVGSK 17 (61)
T ss_pred CccCCcccchhhcCCC
Confidence 4568888777654443
No 177
>PLN02195 cellulose synthase A
Probab=29.03 E-value=72 Score=34.37 Aligned_cols=49 Identities=20% Similarity=0.415 Sum_probs=34.1
Q ss_pred Cccccccccccc---cCCeeEEeC-CCCccChhhHHHHHh-cCCCccccccccc
Q 024056 208 ELTCTVCLEQVN---VGEIVRSLP-CLHQFHANCIDPWLR-QQGTCPVCKLRAG 256 (273)
Q Consensus 208 ~~~C~ICle~~~---~~~~v~~lp-C~H~FH~~CI~~WL~-~~~~CP~CR~~v~ 256 (273)
...|.||-+.+. .|+.-.... |+---|..|.+-=.+ .++.||-|++.+.
T Consensus 6 ~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 6 APICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred CccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 447999999774 344433334 888899999843222 2567999999988
No 178
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=28.96 E-value=2e+02 Score=22.00 Aligned_cols=42 Identities=26% Similarity=0.526 Sum_probs=22.2
Q ss_pred CcccCcchhHHHHHHHHHHHHhccCcCchhHHHHHHHHHHHHHhhhhhH
Q 024056 31 GRPVNSNSLAFLVTVLLLFMILNSHQMSSNFLLWIVLGIFLLATSLRMY 79 (273)
Q Consensus 31 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~y 79 (273)
+--+.++-..+++.++++|.++ .+++|++-.++-+-..++-|
T Consensus 9 ~~~ie~sl~~~~~~l~~~~~~l-------~ll~~ll~~~~~~p~~~~~~ 50 (108)
T PF07219_consen 9 GYRIETSLWVALILLLLLFVVL-------YLLLRLLRRLLSLPSRVRRW 50 (108)
T ss_pred CEEEEeeHHHHHHHHHHHHHHH-------HHHHHHHHHHHhChHHHHHH
Confidence 3345566566666666666666 34455554444444433333
No 179
>PLN02248 cellulose synthase-like protein
Probab=28.67 E-value=46 Score=36.28 Aligned_cols=32 Identities=22% Similarity=0.396 Sum_probs=27.1
Q ss_pred CCCCccChhhHHHHHhcCCCcccccccccCCC
Q 024056 228 PCLHQFHANCIDPWLRQQGTCPVCKLRAGSGW 259 (273)
Q Consensus 228 pC~H~FH~~CI~~WL~~~~~CP~CR~~v~~~~ 259 (273)
-|++..|.+|...-++....||-||.++....
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (1135)
T PLN02248 149 ECGFKICRDCYIDAVKSGGICPGCKEPYKVTD 180 (1135)
T ss_pred cccchhHHhHhhhhhhcCCCCCCCcccccccc
Confidence 37888999999999999899999999885443
No 180
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=27.62 E-value=34 Score=23.03 Aligned_cols=22 Identities=32% Similarity=0.809 Sum_probs=11.8
Q ss_pred CCCccChhhHHHHHhcCCCcccc
Q 024056 229 CLHQFHANCIDPWLRQQGTCPVC 251 (273)
Q Consensus 229 C~H~FH~~CI~~WL~~~~~CP~C 251 (273)
|||.|-..= ..-......||.|
T Consensus 34 Cgh~w~~~v-~~R~~~~~~CP~C 55 (55)
T PF14311_consen 34 CGHEWKASV-NDRTRRGKGCPYC 55 (55)
T ss_pred CCCeeEccH-hhhccCCCCCCCC
Confidence 566554432 2222456679988
No 181
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=27.39 E-value=44 Score=19.60 Aligned_cols=29 Identities=24% Similarity=0.619 Sum_probs=10.0
Q ss_pred cccccccccccCCeeEEeCCCCccChhhH
Q 024056 210 TCTVCLEQVNVGEIVRSLPCLHQFHANCI 238 (273)
Q Consensus 210 ~C~ICle~~~~~~~v~~lpC~H~FH~~CI 238 (273)
.|.+|.+....+-.-.-..|.-.+|..|+
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S--EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCCCceEECccCCCccChhcC
Confidence 48888888775223334458888898885
No 182
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=27.32 E-value=41 Score=30.17 Aligned_cols=25 Identities=28% Similarity=0.542 Sum_probs=18.2
Q ss_pred ccccccccccccCCeeEEeCCCCcc
Q 024056 209 LTCTVCLEQVNVGEIVRSLPCLHQF 233 (273)
Q Consensus 209 ~~C~ICle~~~~~~~v~~lpC~H~F 233 (273)
..||+|...+...+.--..+.+|.|
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~~~h~f 27 (272)
T PRK11088 3 YQCPLCHQPLTLEENSWICPQNHQF 27 (272)
T ss_pred ccCCCCCcchhcCCCEEEcCCCCCC
Confidence 4699999999755543444568998
No 183
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=27.09 E-value=50 Score=25.33 Aligned_cols=10 Identities=60% Similarity=0.624 Sum_probs=4.9
Q ss_pred hhHHHHHHHH
Q 024056 38 SLAFLVTVLL 47 (273)
Q Consensus 38 ~~~~l~~~~~ 47 (273)
||+||++.++
T Consensus 3 SK~~llL~l~ 12 (95)
T PF07172_consen 3 SKAFLLLGLL 12 (95)
T ss_pred hhHHHHHHHH
Confidence 5555544443
No 184
>KOG1074 consensus Transcriptional repressor SALM [Transcription]
Probab=27.05 E-value=41 Score=35.46 Aligned_cols=14 Identities=29% Similarity=0.767 Sum_probs=9.5
Q ss_pred CCCccccccccccc
Q 024056 206 EDELTCTVCLEQVN 219 (273)
Q Consensus 206 ~~~~~C~ICle~~~ 219 (273)
.+...|.||+..+.
T Consensus 603 TdPNqCiiC~rVlS 616 (958)
T KOG1074|consen 603 TDPNQCIICLRVLS 616 (958)
T ss_pred CCccceeeeeeccc
Confidence 35567888877763
No 185
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=26.81 E-value=55 Score=34.24 Aligned_cols=47 Identities=26% Similarity=0.589 Sum_probs=28.9
Q ss_pred CCCcccccccccccc----CCe----e--EEeCCCCccChhhHHHHHhcCCCccccccccc
Q 024056 206 EDELTCTVCLEQVNV----GEI----V--RSLPCLHQFHANCIDPWLRQQGTCPVCKLRAG 256 (273)
Q Consensus 206 ~~~~~C~ICle~~~~----~~~----v--~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v~ 256 (273)
.-+..|+-|...|.. |.+ . ....|.|.-|..=|. +.+.||+|...+.
T Consensus 1129 ~~~~~c~ec~~kfP~CiasG~pIt~~~fWlC~~CkH~a~~~EIs----~y~~CPLCHs~~~ 1185 (1189)
T KOG2041|consen 1129 PYDLQCSECQTKFPVCIASGRPITDNIFWLCPRCKHRAHQHEIS----KYNCCPLCHSMES 1185 (1189)
T ss_pred ccCCCChhhcCcCceeeccCCccccceEEEcccccccccccccc----ccccCccccChhh
Confidence 345678888777642 111 1 122388888776653 4678999976543
No 186
>PHA02688 ORF059 IMV protein VP55; Provisional
Probab=26.52 E-value=80 Score=29.59 Aligned_cols=16 Identities=25% Similarity=0.580 Sum_probs=11.9
Q ss_pred chhHHHHHHHHHHHHH
Q 024056 58 SSNFLLWIVLGIFLLA 73 (273)
Q Consensus 58 ~~~~~~~~~~~~~~~a 73 (273)
.-+=|+|++.|+|+-+
T Consensus 306 vnSkLlWFLaG~l~ty 321 (323)
T PHA02688 306 VNSKLLWFLAGTLFTY 321 (323)
T ss_pred CCchHHHHHHHhHHhe
Confidence 4456899999987643
No 187
>PF15128 T_cell_tran_alt: T-cell leukemia translocation-altered
Probab=26.38 E-value=1.1e+02 Score=23.16 Aligned_cols=25 Identities=28% Similarity=0.765 Sum_probs=18.3
Q ss_pred HHHHhccCcCchhHHHHHHHHHHHHHhhhhhHHH
Q 024056 48 LFMILNSHQMSSNFLLWIVLGIFLLATSLRMYAT 81 (273)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~y~~ 81 (273)
+|+++ |.|+++.++.+-.+-+.|.-
T Consensus 27 ifkll---------L~WlvlsLl~I~lAWk~yG~ 51 (92)
T PF15128_consen 27 IFKLL---------LGWLVLSLLAIHLAWKVYGN 51 (92)
T ss_pred HHHHH---------HHHHHHHHHHHHHHHHHhcc
Confidence 77777 78998888777776666643
No 188
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.09 E-value=15 Score=30.19 Aligned_cols=49 Identities=27% Similarity=0.527 Sum_probs=26.6
Q ss_pred CCCcccccccccccc-CCeeEEeCCCCccChhhHHHH-HhcCC---Cccccccc
Q 024056 206 EDELTCTVCLEQVNV-GEIVRSLPCLHQFHANCIDPW-LRQQG---TCPVCKLR 254 (273)
Q Consensus 206 ~~~~~C~ICle~~~~-~~~v~~lpC~H~FH~~CI~~W-L~~~~---~CP~CR~~ 254 (273)
.++-+|-||+..-.. |-.....=|.-.||..|-.+. |++++ .|-+|+..
T Consensus 63 ~ddatC~IC~KTKFADG~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~ 116 (169)
T KOG3799|consen 63 GDDATCGICHKTKFADGCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQ 116 (169)
T ss_pred CcCcchhhhhhcccccccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHH
Confidence 467789999987432 211111114444666676553 33344 38888763
No 189
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=25.93 E-value=34 Score=34.53 Aligned_cols=37 Identities=24% Similarity=0.526 Sum_probs=24.8
Q ss_pred CCCccccccccccccC-----Ce-----eEEeCCCCccChhhHHHHH
Q 024056 206 EDELTCTVCLEQVNVG-----EI-----VRSLPCLHQFHANCIDPWL 242 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~-----~~-----v~~lpC~H~FH~~CI~~WL 242 (273)
+....|+||.|.|+.- +. .+.+-=|-+||..|+..-.
T Consensus 511 e~~~~C~IC~EkFe~v~d~e~~~Wm~kdaV~le~G~ifH~~Cl~e~~ 557 (579)
T KOG2071|consen 511 ERQASCPICQEKFEVVFDQEEDLWMYKDAVYLEFGRIFHSKCLSEKR 557 (579)
T ss_pred ccccCCcccccccceeecchhhheeecceeeeccCceeeccccchHH
Confidence 4566899999998531 11 1122258899999997754
No 190
>PRK14584 hmsS hemin storage system protein; Provisional
Probab=25.87 E-value=2e+02 Score=24.17 Aligned_cols=50 Identities=26% Similarity=0.181 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhccCcCchh-H------HHHHH----HHHHHHHhhhhhHHHHHHHHHHH
Q 024056 40 AFLVTVLLLFMILNSHQMSSN-F------LLWIV----LGIFLLATSLRMYATCQQLHAQA 89 (273)
Q Consensus 40 ~~l~~~~~~~~~~~~~~~~~~-~------~~~~~----~~~~~~a~~l~~y~~~~q~q~~~ 89 (273)
+||+.-.++-|+.+++.|-|. + -+|.+ +.+.+-|..|..||.+.|+..+.
T Consensus 30 i~l~~~~~~~~~~~~~~~gp~~~~~~~~s~~~tl~~yl~ial~nAvlLI~WA~YN~~RF~~ 90 (153)
T PRK14584 30 LFLLVRGLLEMISRAPHMGPIPLRIYILSGLTTIALYLAIAAFNAVLLIIWAKYNQVRFQV 90 (153)
T ss_pred HHHHHHHHHHHhccCcccCCcchhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344444445556666676666 2 23322 22233444788899999888543
No 191
>PHA01815 hypothetical protein
Probab=25.51 E-value=1.9e+02 Score=19.22 Aligned_cols=9 Identities=56% Similarity=1.124 Sum_probs=4.1
Q ss_pred hHHHHHHHH
Q 024056 39 LAFLVTVLL 47 (273)
Q Consensus 39 ~~~l~~~~~ 47 (273)
++||+|++.
T Consensus 13 laflitlii 21 (55)
T PHA01815 13 LAFLITLII 21 (55)
T ss_pred HHHHHHHHH
Confidence 345554443
No 192
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=25.49 E-value=22 Score=23.99 Aligned_cols=12 Identities=25% Similarity=0.722 Sum_probs=5.9
Q ss_pred CcccccccccCC
Q 024056 247 TCPVCKLRAGSG 258 (273)
Q Consensus 247 ~CP~CR~~v~~~ 258 (273)
.||+|..++.+.
T Consensus 22 ~CPlC~r~l~~e 33 (54)
T PF04423_consen 22 CCPLCGRPLDEE 33 (54)
T ss_dssp E-TTT--EE-HH
T ss_pred cCCCCCCCCCHH
Confidence 799998877643
No 193
>PF08999 SP_C-Propep: Surfactant protein C, N terminal propeptide; InterPro: IPR015091 The N-terminal propeptide of surfactant protein C adopts an alpha-helical structure, with turn and extended regions. Its main function is the stabilisation of metastable surfactant protein C (SP-C), since the latter can irreversibly transform from its native alpha-helical structure to beta-sheet aggregates and form amyloid-like fibrils. The correct intracellular trafficking of proSP-C has also been reported to depend on the propeptide []. ; PDB: 1SPF_A 2YAD_F.
Probab=25.30 E-value=96 Score=23.23 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=15.0
Q ss_pred CCcccCcchhHHHHHHHHHHHHh
Q 024056 30 AGRPVNSNSLAFLVTVLLLFMIL 52 (273)
Q Consensus 30 ~~~~~~~~~~~~l~~~~~~~~~~ 52 (273)
|.-|+|..++++++.++++..++
T Consensus 27 Pc~p~~lKrlliivvVvVlvVvv 49 (93)
T PF08999_consen 27 PCCPVNLKRLLIIVVVVVLVVVV 49 (93)
T ss_dssp SSS-SHHHHHHHHHHHHHHHHHH
T ss_pred CccccccceEEEEEEeeehhHHH
Confidence 66688888877777666655444
No 194
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.14 E-value=25 Score=34.26 Aligned_cols=39 Identities=18% Similarity=0.410 Sum_probs=28.0
Q ss_pred CCCccccccccccccCCee-----EEeCCCCccChhhHHHHHhc
Q 024056 206 EDELTCTVCLEQVNVGEIV-----RSLPCLHQFHANCIDPWLRQ 244 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v-----~~lpC~H~FH~~CI~~WL~~ 244 (273)
.+...||.|.......... ...+|.|.||..|+..|-..
T Consensus 224 ~ntk~CP~c~~~iek~~gc~~~~~~~~~c~~~FCw~Cl~~~~~h 267 (444)
T KOG1815|consen 224 ANTKECPKCKVPIEKDGGCNHMTCKSASCKHEFCWVCLASLSDH 267 (444)
T ss_pred ccCccCCCcccchhccCCccccccccCCcCCeeceeeecccccc
Confidence 4455699999988765411 12249999999998888655
No 195
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=24.65 E-value=22 Score=24.10 Aligned_cols=18 Identities=28% Similarity=0.641 Sum_probs=14.4
Q ss_pred eEEe-CCCCccChhhHHHH
Q 024056 224 VRSL-PCLHQFHANCIDPW 241 (273)
Q Consensus 224 v~~l-pC~H~FH~~CI~~W 241 (273)
...- .|+|.||..|..+|
T Consensus 40 ~v~C~~C~~~fC~~C~~~~ 58 (64)
T smart00647 40 RVTCPKCGFSFCFRCKVPW 58 (64)
T ss_pred eeECCCCCCeECCCCCCcC
Confidence 3444 49999999998888
No 196
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=24.59 E-value=1.2e+02 Score=22.22 Aligned_cols=14 Identities=43% Similarity=0.885 Sum_probs=10.0
Q ss_pred hHHHHHHHHHHHHh
Q 024056 39 LAFLVTVLLLFMIL 52 (273)
Q Consensus 39 ~~~l~~~~~~~~~~ 52 (273)
..||+..+++|+++
T Consensus 3 ~~fl~~plivf~if 16 (75)
T PF06667_consen 3 FEFLFVPLIVFMIF 16 (75)
T ss_pred hHHHHHHHHHHHHH
Confidence 35677777778777
No 197
>PF12113 SVM_signal: SVM protein signal sequence; InterPro: IPR021970 This domain is presumed to be a signal peptide sequence found in Sequence-variable mosaic (SVM) proteins []. It is found in phytoplasmas. This presumed signal sequence is about 30 amino acids in length.
Probab=24.51 E-value=51 Score=20.35 Aligned_cols=18 Identities=44% Similarity=0.646 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHhccCcC
Q 024056 40 AFLVTVLLLFMILNSHQM 57 (273)
Q Consensus 40 ~~l~~~~~~~~~~~~~~~ 57 (273)
++|++++-+|.|.|.+|+
T Consensus 13 i~Lf~~LGL~fI~NN~qv 30 (33)
T PF12113_consen 13 IFLFIFLGLFFITNNNQV 30 (33)
T ss_pred hHHHHHHHHHheecCcee
Confidence 566777777888777765
No 198
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.48 E-value=43 Score=24.52 Aligned_cols=24 Identities=29% Similarity=0.613 Sum_probs=18.1
Q ss_pred CCccChhhHHHHHhcCCCcccccccc
Q 024056 230 LHQFHANCIDPWLRQQGTCPVCKLRA 255 (273)
Q Consensus 230 ~H~FH~~CI~~WL~~~~~CP~CR~~v 255 (273)
.|.||.+|.+.- -+..||.|-..+
T Consensus 28 EcTFCadCae~~--l~g~CPnCGGel 51 (84)
T COG3813 28 ECTFCADCAENR--LHGLCPNCGGEL 51 (84)
T ss_pred eeehhHhHHHHh--hcCcCCCCCchh
Confidence 478999998753 477899995544
No 199
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=24.40 E-value=40 Score=30.60 Aligned_cols=43 Identities=21% Similarity=0.216 Sum_probs=32.3
Q ss_pred CCccccccccccccCCeeEEeCCCCccChhhHHHHHhcCC--Ccccc
Q 024056 207 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQG--TCPVC 251 (273)
Q Consensus 207 ~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~--~CP~C 251 (273)
-+..|+|=...+..+ ++.-.|||+|-.+-|.+.+.... .||+=
T Consensus 175 fs~rdPis~~~I~nP--viSkkC~HvydrDsI~~~l~~~~~i~CPv~ 219 (262)
T KOG2979|consen 175 FSNRDPISKKPIVNP--VISKKCGHVYDRDSIMQILCDEITIRCPVL 219 (262)
T ss_pred hcccCchhhhhhhch--hhhcCcCcchhhhhHHHHhccCceeecccc
Confidence 356788877777744 55566999999999999887744 47763
No 200
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=24.26 E-value=15 Score=33.98 Aligned_cols=40 Identities=25% Similarity=0.569 Sum_probs=30.1
Q ss_pred CCccccccccccccCCeeEEeCCCCccChhhHHHHHhcCC
Q 024056 207 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQG 246 (273)
Q Consensus 207 ~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~ 246 (273)
....|.+|++.+..+......-|.-+||..|+..|+....
T Consensus 213 ~~rvC~~CF~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (288)
T KOG1729|consen 213 PIRVCDICFEELEKGARGDREDSLPVFHGKCYPNWLTTGA 252 (288)
T ss_pred CceecHHHHHHHhcccccchhhcccccccccccccccccc
Confidence 3348999999998654445555666999999999987644
No 201
>PF03213 Pox_P35: Poxvirus P35 protein; InterPro: IPR004900 The Poxvirus P35 protein is an immunodominant envelope protein. It binds to heparan sulphate on the cell surface to provide virion attachment to target cell [].; GO: 0019031 viral envelope
Probab=24.21 E-value=93 Score=29.18 Aligned_cols=15 Identities=33% Similarity=0.769 Sum_probs=10.8
Q ss_pred chhHHHHHHHHHHHH
Q 024056 58 SSNFLLWIVLGIFLL 72 (273)
Q Consensus 58 ~~~~~~~~~~~~~~~ 72 (273)
.-+=|+|++.|.|+-
T Consensus 308 vnSkllWFLaG~l~t 322 (325)
T PF03213_consen 308 VNSKLLWFLAGILFT 322 (325)
T ss_pred CCchHHHHHHHhHHh
Confidence 345678999988764
No 202
>PF10852 DUF2651: Protein of unknown function (DUF2651) ; InterPro: IPR020258 This entry contains transmembrane proteins with no known function.
Probab=24.01 E-value=1.4e+02 Score=22.27 Aligned_cols=28 Identities=25% Similarity=0.594 Sum_probs=19.0
Q ss_pred HHHHHhccCcCchhHHHHHH-HHHHHHHh
Q 024056 47 LLFMILNSHQMSSNFLLWIV-LGIFLLAT 74 (273)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~-~~~~~~a~ 74 (273)
++|.++...-.+|.|+.|++ ..++-++.
T Consensus 38 ~i~Lil~~t~fn~SFf~WvvvYT~~s~i~ 66 (82)
T PF10852_consen 38 AISLILTFTLFNPSFFFWVVVYTIFSFIV 66 (82)
T ss_pred HHHHHHHHHhhChHHHHHHHHHHHHHHHH
Confidence 35566666678999999994 44444444
No 203
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=23.60 E-value=48 Score=29.65 Aligned_cols=25 Identities=28% Similarity=0.615 Sum_probs=17.6
Q ss_pred ChhhHHHHHhcCCCcccccccccCC
Q 024056 234 HANCIDPWLRQQGTCPVCKLRAGSG 258 (273)
Q Consensus 234 H~~CI~~WL~~~~~CP~CR~~v~~~ 258 (273)
|..|-.+--+.-..||+|+..-...
T Consensus 252 ClsChqqIHRNAPiCPlCKaKsRSr 276 (286)
T KOG4451|consen 252 CLSCHQQIHRNAPICPLCKAKSRSR 276 (286)
T ss_pred HHHHHHHHhcCCCCCcchhhccccC
Confidence 5566666656778999998765443
No 204
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=23.28 E-value=52 Score=24.08 Aligned_cols=31 Identities=26% Similarity=0.716 Sum_probs=20.8
Q ss_pred CccccccccccccCCeeEE-e-CCCCccChhhHHH
Q 024056 208 ELTCTVCLEQVNVGEIVRS-L-PCLHQFHANCIDP 240 (273)
Q Consensus 208 ~~~C~ICle~~~~~~~v~~-l-pC~H~FH~~CI~~ 240 (273)
...|.+|-... |-.+.. . .|.-.||..|...
T Consensus 36 ~~~C~~C~~~~--Ga~i~C~~~~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 36 KLKCSICKKKG--GACIGCSHPGCSRSFHVPCARK 68 (90)
T ss_pred CCCCcCCCCCC--CeEEEEeCCCCCcEEChHHHcc
Confidence 45799999772 322222 2 3899999999754
No 205
>PF06750 DiS_P_DiS: Bacterial Peptidase A24 N-terminal domain; InterPro: IPR010627 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This domain is found at the N terminus of bacterial aspartic peptidases belonging to MEROPS peptidase family A24 (clan AD), subfamily A24A (type IV prepilin peptidase, IPR000045 from INTERPRO). It's function has not been specifically determined; however some of the family have been characterised as bifunctional [], and this domain may contain the N-methylation activity. The domain consists of an intracellular region between a pair of transmembrane domains. This intracellular region contains an invariant proline and four conserved cysteines. These Cys residues are arranged in a two-pair motif, with the Cys residues of a pair separated (usually) by 2 aa and with each pair separated by 21 largely hydrophilic residues (C-X-X-C...X21...C-X-X-C); they have been shown to be essential to the overall function of the enzyme [, ]. The bifunctional enzyme prepilin peptidase (PilD) from Pseudomonas aeruginosa is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl transferase (MTase). It is responsible for endopeptidic cleavage of the unique leader peptides that characterise type-IV pilin precursors, as well as proteins with homologous leader sequences that are essential components of the general secretion pathway found in a variety of Gram-negative pathogens. Following removal of the leader peptides, the same enzyme is responsible for the second posttranslational modification that characterises the type-IV pilins and their homologues, namely N-methylation of the newly exposed N-terminal amino acid residue [].
Probab=23.01 E-value=49 Score=25.10 Aligned_cols=37 Identities=19% Similarity=0.422 Sum_probs=28.2
Q ss_pred ccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCcccccccccC
Q 024056 209 LTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGS 257 (273)
Q Consensus 209 ~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v~~ 257 (273)
..|+-|...+.--|.+- |-.|+..+..|..|+++++.
T Consensus 34 S~C~~C~~~L~~~~lIP------------i~S~l~lrGrCr~C~~~I~~ 70 (92)
T PF06750_consen 34 SHCPHCGHPLSWWDLIP------------ILSYLLLRGRCRYCGAPIPP 70 (92)
T ss_pred CcCcCCCCcCcccccch------------HHHHHHhCCCCcccCCCCCh
Confidence 36888888877554432 45799999999999998864
No 206
>PRK09458 pspB phage shock protein B; Provisional
Probab=22.65 E-value=1.1e+02 Score=22.49 Aligned_cols=14 Identities=29% Similarity=0.600 Sum_probs=10.6
Q ss_pred hHHHHHHHHHHHHh
Q 024056 39 LAFLVTVLLLFMIL 52 (273)
Q Consensus 39 ~~~l~~~~~~~~~~ 52 (273)
..||+.-+.+|+++
T Consensus 3 ~~fl~~PliiF~if 16 (75)
T PRK09458 3 ALFLAIPLTIFVLF 16 (75)
T ss_pred chHHHHhHHHHHHH
Confidence 46777777888887
No 207
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=22.50 E-value=69 Score=24.96 Aligned_cols=33 Identities=15% Similarity=0.347 Sum_probs=25.9
Q ss_pred cccccccccccCCeeEEeCCCCccChhhHHHHHh
Q 024056 210 TCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLR 243 (273)
Q Consensus 210 ~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~ 243 (273)
+|.||-..+..|+.-+.++= -.-|..|+.+=..
T Consensus 4 kC~iCg~~I~~gqlFTF~~k-G~VH~~C~~~~~~ 36 (101)
T PF09943_consen 4 KCYICGKPIYEGQLFTFTKK-GPVHYECFREKAS 36 (101)
T ss_pred EEEecCCeeeecceEEEecC-CcEeHHHHHHHHh
Confidence 69999999999887666554 5589999877543
No 208
>PF06796 NapE: Periplasmic nitrate reductase protein NapE; InterPro: IPR010649 This family consists of several bacterial periplasmic nitrate reductase NapE proteins. Seven genes, napKEFDABC, encoding the periplasmic nitrate reductase system were cloned from the denitrifying phototrophic bacterium Rhodobacter sphaeroides. NapE is thought to be a transmembrane protein [].
Probab=22.50 E-value=86 Score=21.76 Aligned_cols=14 Identities=50% Similarity=0.724 Sum_probs=10.6
Q ss_pred hHHHHHHHHHHHHh
Q 024056 39 LAFLVTVLLLFMIL 52 (273)
Q Consensus 39 ~~~l~~~~~~~~~~ 52 (273)
++||+..+++|++|
T Consensus 19 ~~flfl~~~l~PiL 32 (56)
T PF06796_consen 19 KAFLFLAVVLFPIL 32 (56)
T ss_pred HHHHHHHHHHHHHH
Confidence 57777777788877
No 209
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.42 E-value=15 Score=33.44 Aligned_cols=47 Identities=28% Similarity=0.494 Sum_probs=35.7
Q ss_pred CccccccccccccCC---eeEEeC--------CCCccChhhHHHHHhcC-CCccccccc
Q 024056 208 ELTCTVCLEQVNVGE---IVRSLP--------CLHQFHANCIDPWLRQQ-GTCPVCKLR 254 (273)
Q Consensus 208 ~~~C~ICle~~~~~~---~v~~lp--------C~H~FH~~CI~~WL~~~-~~CP~CR~~ 254 (273)
...|.||...+...+ .-+.+. |||..|..|++.-+.+. ..||.|+..
T Consensus 207 ~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 207 EKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 457999999998432 223455 99999999999987664 479999874
No 210
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=22.28 E-value=30 Score=38.82 Aligned_cols=50 Identities=26% Similarity=0.580 Sum_probs=39.3
Q ss_pred CCCccccccccccccCCeeEEeCCCCccChhhHHHHHhcCC----Ccccccccc
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQG----TCPVCKLRA 255 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~----~CP~CR~~v 255 (273)
.....|.+|.......+.+...-|.-.||..|+++-+.... .||-||..-
T Consensus 1106 ~~~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1106 AVNALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKEH 1159 (1404)
T ss_pred cchhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchhh
Confidence 45668999999988765555555899999999999887643 599998755
No 211
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=21.94 E-value=61 Score=28.93 Aligned_cols=26 Identities=27% Similarity=0.558 Sum_probs=17.8
Q ss_pred ChhhHHHHHhcCCCcccccccccCCC
Q 024056 234 HANCIDPWLRQQGTCPVCKLRAGSGW 259 (273)
Q Consensus 234 H~~CI~~WL~~~~~CP~CR~~v~~~~ 259 (273)
|..|--+--+.-..||+|++.-..++
T Consensus 197 C~sC~qqIHRNAPiCPlCK~KsRSrn 222 (230)
T PF10146_consen 197 CQSCHQQIHRNAPICPLCKAKSRSRN 222 (230)
T ss_pred hHhHHHHHhcCCCCCcccccccccCC
Confidence 55665555566789999988655443
No 212
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=21.61 E-value=40 Score=31.48 Aligned_cols=42 Identities=19% Similarity=0.367 Sum_probs=27.9
Q ss_pred CCccccccccccccC-------CeeEEeCCCCccChhhHHHHHhcCCCcccccc
Q 024056 207 DELTCTVCLEQVNVG-------EIVRSLPCLHQFHANCIDPWLRQQGTCPVCKL 253 (273)
Q Consensus 207 ~~~~C~ICle~~~~~-------~~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~ 253 (273)
....|++|=..-... +..+ +.+|.-|-.+|--....||.|-.
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~R-----yL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLR-----YLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCce-----EEEcCCCCCcccccCccCCCCCC
Confidence 456899997764322 1222 34566777788777788999954
No 213
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=21.51 E-value=30 Score=27.48 Aligned_cols=28 Identities=21% Similarity=0.239 Sum_probs=17.6
Q ss_pred HhcCCCcccccccccCCCCCCcccccccC
Q 024056 242 LRQQGTCPVCKLRAGSGWHETRQVEMDAS 270 (273)
Q Consensus 242 L~~~~~CP~CR~~v~~~~~~~~~~~~~~~ 270 (273)
+.+...|+.|++++.-..+-+.. |+|++
T Consensus 82 LGr~D~CM~C~~pLTLd~~legk-ef~~~ 109 (114)
T PF11023_consen 82 LGRVDACMHCKEPLTLDPSLEGK-EFDEK 109 (114)
T ss_pred hchhhccCcCCCcCccCchhhcc-hhhHh
Confidence 45556799999998755544333 44443
No 214
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=21.01 E-value=3.1e+02 Score=26.60 Aligned_cols=45 Identities=9% Similarity=0.317 Sum_probs=30.2
Q ss_pred CCcccCcchhHHHHHHHHHHHHhccCcCchhHHHHHHHHHHHHHhhhhhHHH
Q 024056 30 AGRPVNSNSLAFLVTVLLLFMILNSHQMSSNFLLWIVLGIFLLATSLRMYAT 81 (273)
Q Consensus 30 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~y~~ 81 (273)
+.+.+.++=..|++.+++++.|+ .++.|++-.||-+-...+.|-.
T Consensus 33 ~~~~ie~Sl~~lv~~~ii~lvv~-------~~l~~~l~~v~~~~~~~~~w~~ 77 (400)
T COG3071 33 DNYNIEMSLTTLVIFLIIALVVL-------YLLEWLLRRVLRTPAHTRGWFS 77 (400)
T ss_pred cceeeeeeHHHHHHHHHHHHHHH-------HHHHHHHHHHhcCcHHHHHHHH
Confidence 56666666556666666666666 6788999998877755555533
No 215
>TIGR02972 TMAO_torE trimethylamine N-oxide reductase system, TorE protein. Members of this small, apparent transmembrane protein are designated TorE and occur in operons for the trimethylamine N-oxide (TMAO) reductase system. Members are closely related to the NapE protein of the related periplasmic nitrate reductase system. It may be that TorE is an integral membrane subunit of a complex with the reductase TorA.
Probab=20.99 E-value=1e+02 Score=20.63 Aligned_cols=14 Identities=36% Similarity=0.493 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHHHh
Q 024056 39 LAFLVTVLLLFMIL 52 (273)
Q Consensus 39 ~~~l~~~~~~~~~~ 52 (273)
++|++..+++|++|
T Consensus 11 ~~flfl~v~l~PiL 24 (47)
T TIGR02972 11 KALGFIIVVLFPIL 24 (47)
T ss_pred HHHHHHHHHHHHHH
Confidence 57777777788887
No 216
>PF11125 DUF2830: Protein of unknown function (DUF2830); InterPro: IPR022599 This entry represents putative lysis proteins from Bacteriophage MS2 and Bacteriophage BZ13. The bacteriophage MS2 lysin protein COM1L5 from SWISSPROT was identified as an overlapping cistron in the bacteriophage MS2 RNA [].
Probab=20.48 E-value=2.8e+02 Score=18.65 Aligned_cols=21 Identities=14% Similarity=0.175 Sum_probs=13.6
Q ss_pred cCchhHHHHHHHHHHHHHhhh
Q 024056 56 QMSSNFLLWIVLGIFLLATSL 76 (273)
Q Consensus 56 ~~~~~~~~~~~~~~~~~a~~l 76 (273)
+++.-|+.|+.-.+++..++|
T Consensus 29 ~FTn~~~~~l~~llI~iv~TL 49 (54)
T PF11125_consen 29 KFTNQLLHSLWGLLIRIVTTL 49 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 355668888876666665543
No 217
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=20.18 E-value=50 Score=23.17 Aligned_cols=15 Identities=40% Similarity=0.756 Sum_probs=10.7
Q ss_pred CCCcccccccccCCC
Q 024056 245 QGTCPVCKLRAGSGW 259 (273)
Q Consensus 245 ~~~CP~CR~~v~~~~ 259 (273)
...||+|..+...+.
T Consensus 39 ~p~CPlC~s~M~~~~ 53 (59)
T PF14169_consen 39 EPVCPLCKSPMVSGT 53 (59)
T ss_pred CccCCCcCCccccce
Confidence 457999988765543
Done!