Query 024056
Match_columns 273
No_of_seqs 201 out of 1921
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 17:26:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024056.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024056hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.7 5.7E-17 2E-21 122.7 7.6 79 150-257 11-89 (91)
2 1x4j_A Ring finger protein 38; 99.6 1.7E-15 5.8E-20 110.1 5.0 53 206-258 21-73 (75)
3 2kiz_A E3 ubiquitin-protein li 99.5 5.5E-15 1.9E-19 105.5 6.2 54 206-259 12-65 (69)
4 1v87_A Deltex protein 2; ring- 99.5 5.1E-15 1.7E-19 115.9 6.4 62 207-268 24-105 (114)
5 2ep4_A Ring finger protein 24; 99.5 8.1E-15 2.8E-19 106.0 6.3 56 206-261 13-68 (74)
6 2ect_A Ring finger protein 126 99.5 1.1E-14 3.6E-19 106.5 6.4 56 206-261 13-68 (78)
7 1iym_A EL5; ring-H2 finger, ub 99.5 4.8E-15 1.6E-19 101.1 3.8 50 207-256 4-54 (55)
8 2ecm_A Ring finger and CHY zin 99.4 6.8E-14 2.3E-18 95.2 4.5 50 207-256 4-54 (55)
9 2ecl_A Ring-box protein 2; RNF 99.4 5E-14 1.7E-18 104.2 4.1 51 207-257 14-76 (81)
10 2ea6_A Ring finger protein 4; 99.4 7.8E-14 2.7E-18 99.0 4.2 52 206-257 13-68 (69)
11 3ng2_A RNF4, snurf, ring finge 99.4 6.7E-14 2.3E-18 100.1 3.7 54 206-259 8-65 (71)
12 1chc_A Equine herpes virus-1 r 99.4 2.1E-13 7.3E-18 96.8 5.1 50 207-258 4-53 (68)
13 2xeu_A Ring finger protein 4; 99.4 1.9E-13 6.4E-18 95.5 3.6 52 207-258 2-57 (64)
14 3dpl_R Ring-box protein 1; ubi 99.4 3.4E-13 1.2E-17 105.0 5.0 50 207-256 36-100 (106)
15 2djb_A Polycomb group ring fin 99.4 7.1E-13 2.4E-17 95.4 6.2 53 206-260 13-65 (72)
16 2d8t_A Dactylidin, ring finger 99.4 2.4E-13 8.1E-18 97.7 3.2 50 206-258 13-62 (71)
17 2ecn_A Ring finger protein 141 99.3 3.7E-13 1.3E-17 96.2 3.1 51 206-260 13-63 (70)
18 2csy_A Zinc finger protein 183 99.3 9.7E-13 3.3E-17 96.8 4.8 48 206-256 13-60 (81)
19 2ct2_A Tripartite motif protei 99.3 2.5E-12 8.4E-17 95.5 6.7 53 206-258 13-69 (88)
20 2yur_A Retinoblastoma-binding 99.3 2.1E-12 7.3E-17 93.5 5.8 48 206-256 13-63 (74)
21 2ecy_A TNF receptor-associated 99.3 1.3E-12 4.6E-17 92.3 4.5 50 206-258 13-63 (66)
22 4ayc_A E3 ubiquitin-protein li 99.3 5.2E-13 1.8E-17 108.2 2.2 49 207-258 52-100 (138)
23 2d8s_A Cellular modulator of i 99.3 2.5E-12 8.5E-17 95.1 5.6 53 206-259 13-72 (80)
24 2ysl_A Tripartite motif-contai 99.3 2.3E-12 7.9E-17 92.5 4.4 50 206-258 18-70 (73)
25 1t1h_A Gspef-atpub14, armadill 99.3 3.2E-12 1.1E-16 93.1 4.7 50 206-258 6-56 (78)
26 4a0k_B E3 ubiquitin-protein li 99.2 7.6E-13 2.6E-17 104.7 0.5 50 207-256 47-111 (117)
27 2ecw_A Tripartite motif-contai 99.2 7.7E-12 2.6E-16 91.9 5.3 50 206-258 17-72 (85)
28 3lrq_A E3 ubiquitin-protein li 99.2 2.5E-12 8.5E-17 98.6 2.4 50 206-257 20-70 (100)
29 2ysj_A Tripartite motif-contai 99.2 1.2E-11 4E-16 86.5 5.4 43 206-251 18-63 (63)
30 4ap4_A E3 ubiquitin ligase RNF 99.2 7.2E-12 2.5E-16 99.4 3.9 54 207-260 6-63 (133)
31 2egp_A Tripartite motif-contai 99.2 2.8E-12 9.7E-17 93.4 1.4 50 206-258 10-66 (79)
32 2ecv_A Tripartite motif-contai 99.2 1.1E-11 3.8E-16 91.0 4.6 50 206-258 17-72 (85)
33 2ckl_A Polycomb group ring fin 99.2 9.1E-12 3.1E-16 96.5 4.0 51 206-258 13-63 (108)
34 2y43_A E3 ubiquitin-protein li 99.2 6.5E-12 2.2E-16 95.8 3.0 49 207-257 21-69 (99)
35 3ztg_A E3 ubiquitin-protein li 99.2 1.7E-11 5.8E-16 92.0 5.2 48 206-256 11-61 (92)
36 3fl2_A E3 ubiquitin-protein li 99.2 8.7E-12 3E-16 99.0 3.2 48 207-257 51-99 (124)
37 2ecj_A Tripartite motif-contai 99.2 1.3E-11 4.4E-16 84.5 3.6 43 206-251 13-58 (58)
38 1g25_A CDK-activating kinase a 99.2 2E-11 6.9E-16 85.9 4.0 52 207-258 2-56 (65)
39 1jm7_A BRCA1, breast cancer ty 99.1 2.9E-11 9.9E-16 93.7 3.0 49 207-258 20-71 (112)
40 2ckl_B Ubiquitin ligase protei 99.1 2.8E-11 9.6E-16 100.6 2.9 50 206-257 52-102 (165)
41 4ap4_A E3 ubiquitin ligase RNF 99.1 4.4E-11 1.5E-15 94.8 3.7 53 206-258 70-126 (133)
42 1z6u_A NP95-like ring finger p 99.1 3.7E-11 1.3E-15 98.9 3.3 49 207-258 77-126 (150)
43 3hct_A TNF receptor-associated 99.1 5.4E-11 1.9E-15 93.7 3.6 50 206-258 16-66 (118)
44 1wgm_A Ubiquitin conjugation f 99.1 9.2E-11 3.1E-15 89.8 4.7 50 206-258 20-70 (98)
45 2kr4_A Ubiquitin conjugation f 99.1 9.5E-11 3.2E-15 87.3 4.7 50 206-258 12-61 (85)
46 2ct0_A Non-SMC element 1 homol 99.1 8.7E-11 3E-15 85.5 4.3 51 206-258 13-65 (74)
47 3l11_A E3 ubiquitin-protein li 99.1 1.7E-11 6E-16 95.9 0.2 49 206-257 13-62 (115)
48 1rmd_A RAG1; V(D)J recombinati 99.0 8.2E-11 2.8E-15 92.1 2.6 50 207-259 22-72 (116)
49 2kre_A Ubiquitin conjugation f 99.0 1.8E-10 6E-15 88.6 4.4 50 206-258 27-76 (100)
50 1e4u_A Transcriptional repress 99.0 3E-10 1E-14 83.4 5.2 55 206-261 9-66 (78)
51 3knv_A TNF receptor-associated 99.0 1.1E-10 3.6E-15 95.2 1.9 48 206-256 29-77 (141)
52 2vje_A E3 ubiquitin-protein li 99.0 2.7E-10 9.2E-15 80.4 3.0 48 207-257 7-57 (64)
53 1bor_A Transcription factor PM 99.0 1.8E-10 6E-15 79.0 1.8 48 206-259 4-51 (56)
54 2y1n_A E3 ubiquitin-protein li 98.9 3.4E-10 1.2E-14 106.2 4.2 51 207-260 331-382 (389)
55 1jm7_B BARD1, BRCA1-associated 98.9 2.4E-10 8.1E-15 89.8 1.2 46 207-257 21-67 (117)
56 2vje_B MDM4 protein; proto-onc 98.9 7E-10 2.4E-14 78.0 2.9 50 207-257 6-56 (63)
57 4ic3_A E3 ubiquitin-protein li 98.8 5.4E-10 1.8E-14 80.9 1.3 45 207-258 23-68 (74)
58 2c2l_A CHIP, carboxy terminus 98.8 2.2E-09 7.4E-14 95.3 4.4 49 206-257 206-255 (281)
59 2ecg_A Baculoviral IAP repeat- 98.8 3.7E-10 1.3E-14 81.9 -1.3 45 207-258 24-69 (75)
60 3hcs_A TNF receptor-associated 98.8 2.2E-09 7.4E-14 89.5 3.1 50 206-258 16-66 (170)
61 2yu4_A E3 SUMO-protein ligase 98.8 3E-09 1E-13 80.5 3.2 46 206-254 5-59 (94)
62 3k1l_B Fancl; UBC, ring, RWD, 98.7 2.3E-09 7.7E-14 98.5 2.0 55 206-260 306-376 (381)
63 2ea5_A Cell growth regulator w 98.7 1.8E-08 6E-13 71.9 4.3 48 206-260 13-61 (68)
64 1vyx_A ORF K3, K3RING; zinc-bi 98.6 1.8E-08 6.1E-13 70.2 3.7 49 206-257 4-59 (60)
65 2f42_A STIP1 homology and U-bo 98.6 1.4E-08 4.8E-13 85.8 3.6 49 206-257 104-153 (179)
66 1wim_A KIAA0161 protein; ring 98.6 2E-08 6.7E-13 75.7 3.2 48 207-254 4-61 (94)
67 3htk_C E3 SUMO-protein ligase 98.6 2.2E-08 7.6E-13 89.0 3.7 50 206-257 179-232 (267)
68 2yho_A E3 ubiquitin-protein li 98.5 1.4E-08 4.7E-13 74.5 0.8 45 207-258 17-62 (79)
69 3t6p_A Baculoviral IAP repeat- 98.4 4.8E-08 1.7E-12 90.5 1.7 46 206-258 293-339 (345)
70 2bay_A PRE-mRNA splicing facto 98.4 8.7E-08 3E-12 66.9 2.2 48 209-259 4-52 (61)
71 3vk6_A E3 ubiquitin-protein li 98.0 3.8E-06 1.3E-10 63.8 4.0 49 210-260 3-52 (101)
72 3nw0_A Non-structural maintena 97.8 1.7E-05 5.8E-10 69.8 5.4 49 207-258 179-230 (238)
73 2ko5_A Ring finger protein Z; 96.3 0.0031 1.1E-07 47.1 3.6 55 207-266 27-82 (99)
74 2jun_A Midline-1; B-BOX, TRIM, 95.5 0.0078 2.7E-07 45.0 3.1 35 207-241 2-36 (101)
75 2lri_C Autoimmune regulator; Z 94.4 0.03 1E-06 39.1 3.3 45 207-254 11-59 (66)
76 1wil_A KIAA1045 protein; ring 91.0 0.16 5.6E-06 37.1 3.1 35 206-241 13-47 (89)
77 2l5u_A Chromodomain-helicase-D 90.6 0.13 4.6E-06 35.0 2.3 45 206-253 9-57 (61)
78 1weu_A Inhibitor of growth fam 89.3 0.41 1.4E-05 35.5 4.2 46 206-255 34-86 (91)
79 3o36_A Transcription intermedi 88.6 0.17 6E-06 41.9 1.9 46 207-255 3-52 (184)
80 1we9_A PHD finger family prote 88.1 0.12 4E-06 35.5 0.5 49 206-254 4-58 (64)
81 1xwh_A Autoimmune regulator; P 88.0 0.13 4.3E-06 35.7 0.6 46 206-254 6-55 (66)
82 1fp0_A KAP-1 corepressor; PHD 87.9 0.3 1E-05 36.0 2.6 47 205-254 22-72 (88)
83 2lv9_A Histone-lysine N-methyl 87.4 0.18 6.3E-06 37.8 1.3 46 207-253 27-75 (98)
84 3u5n_A E3 ubiquitin-protein li 87.3 0.11 3.8E-06 44.0 0.0 48 206-256 5-56 (207)
85 1mm2_A MI2-beta; PHD, zinc fin 87.3 0.16 5.3E-06 34.7 0.7 47 206-255 7-57 (61)
86 1f62_A Transcription factor WS 85.4 0.29 9.8E-06 31.9 1.2 44 210-253 2-49 (51)
87 2yql_A PHD finger protein 21A; 85.2 0.11 3.8E-06 34.8 -1.0 45 206-253 7-55 (56)
88 2k16_A Transcription initiatio 84.8 0.27 9.1E-06 34.7 0.9 51 206-256 16-70 (75)
89 2puy_A PHD finger protein 21A; 84.7 0.11 3.9E-06 35.2 -1.1 47 207-256 4-54 (60)
90 2e6r_A Jumonji/ARID domain-con 84.2 0.13 4.6E-06 38.1 -0.9 50 206-255 14-67 (92)
91 1wem_A Death associated transc 83.1 0.55 1.9E-05 33.2 2.0 48 207-255 15-71 (76)
92 2ysm_A Myeloid/lymphoid or mix 82.6 0.37 1.3E-05 36.6 0.9 47 206-252 5-55 (111)
93 3lqh_A Histone-lysine N-methyl 82.4 0.3 1E-05 40.8 0.4 51 209-259 3-68 (183)
94 1weo_A Cellulose synthase, cat 81.0 4.7 0.00016 29.6 6.3 50 207-256 15-69 (93)
95 3m62_A Ubiquitin conjugation f 80.8 1 3.5E-05 46.6 3.7 50 206-258 889-939 (968)
96 1wen_A Inhibitor of growth fam 80.8 0.96 3.3E-05 31.8 2.5 46 207-256 15-67 (71)
97 2l43_A N-teminal domain from h 78.5 0.57 1.9E-05 34.4 0.7 53 206-258 23-79 (88)
98 2cs3_A Protein C14ORF4, MY039 76.3 4.3 0.00015 29.3 4.7 39 206-244 13-52 (93)
99 3v43_A Histone acetyltransfera 75.9 3.1 0.00011 31.5 4.3 33 207-239 4-42 (112)
100 2yt5_A Metal-response element- 75.2 0.5 1.7E-05 32.4 -0.4 50 207-256 5-63 (66)
101 2lbm_A Transcriptional regulat 73.4 3.3 0.00011 33.1 4.0 46 205-253 60-116 (142)
102 4gne_A Histone-lysine N-methyl 72.2 2.6 8.8E-05 32.0 3.0 48 206-258 13-66 (107)
103 1wep_A PHF8; structural genomi 72.1 4 0.00014 28.9 3.9 48 207-255 11-64 (79)
104 2kgg_A Histone demethylase jar 71.1 4.1 0.00014 26.4 3.4 43 210-252 4-52 (52)
105 2ro1_A Transcription intermedi 70.7 0.78 2.7E-05 38.3 -0.3 44 209-255 3-50 (189)
106 3v43_A Histone acetyltransfera 69.9 1.2 4E-05 33.9 0.6 47 207-253 60-111 (112)
107 2d8v_A Zinc finger FYVE domain 69.7 3.3 0.00011 28.7 2.8 32 206-241 6-38 (67)
108 2vpb_A Hpygo1, pygopus homolog 68.5 3.5 0.00012 28.3 2.7 33 206-238 6-40 (65)
109 2ri7_A Nucleosome-remodeling f 67.1 1.3 4.4E-05 36.1 0.3 47 207-254 7-59 (174)
110 2yw8_A RUN and FYVE domain-con 66.7 4.1 0.00014 29.1 2.9 34 207-240 18-52 (82)
111 2dar_A PDZ and LIM domain prot 66.7 5.2 0.00018 28.6 3.5 41 207-258 24-64 (90)
112 1joc_A EEA1, early endosomal a 66.0 3.8 0.00013 31.8 2.8 34 207-240 68-102 (125)
113 1z2q_A LM5-1; membrane protein 65.9 6.2 0.00021 28.3 3.8 36 206-241 19-55 (84)
114 1x4u_A Zinc finger, FYVE domai 65.3 4.9 0.00017 28.8 3.1 35 206-240 12-47 (84)
115 3t7l_A Zinc finger FYVE domain 64.9 4.4 0.00015 29.5 2.8 50 207-256 19-75 (90)
116 1y02_A CARP2, FYVE-ring finger 64.7 1.1 3.7E-05 34.9 -0.5 49 207-255 18-67 (120)
117 3o70_A PHD finger protein 13; 63.7 1.4 4.8E-05 30.6 -0.1 47 206-253 17-66 (68)
118 3shb_A E3 ubiquitin-protein li 62.6 1.2 4.1E-05 31.8 -0.7 44 210-253 28-76 (77)
119 3ask_A E3 ubiquitin-protein li 62.3 2 6.9E-05 37.0 0.6 46 208-253 174-224 (226)
120 2e6s_A E3 ubiquitin-protein li 61.9 1.8 6.1E-05 30.9 0.2 44 210-253 28-76 (77)
121 2vnf_A ING 4, P29ING4, inhibit 61.2 1.6 5.3E-05 29.5 -0.2 43 207-253 9-58 (60)
122 1vfy_A Phosphatidylinositol-3- 59.9 7.4 0.00025 27.0 3.2 31 209-239 12-43 (73)
123 1wev_A Riken cDNA 1110020M19; 59.8 0.95 3.2E-05 33.1 -1.6 51 207-257 15-75 (88)
124 2kwj_A Zinc finger protein DPF 59.2 0.82 2.8E-05 35.0 -2.2 49 209-257 59-111 (114)
125 3ql9_A Transcriptional regulat 59.2 8.6 0.00029 30.1 3.7 45 206-253 55-110 (129)
126 1z60_A TFIIH basal transcripti 59.0 3.2 0.00011 28.1 1.1 41 210-251 17-58 (59)
127 3i2d_A E3 SUMO-protein ligase 59.0 8.1 0.00028 35.6 4.1 47 207-256 248-299 (371)
128 3c6w_A P28ING5, inhibitor of g 58.6 1.9 6.4E-05 29.1 -0.2 43 207-253 8-57 (59)
129 2kwj_A Zinc finger protein DPF 58.3 6.8 0.00023 29.7 3.0 32 210-241 3-41 (114)
130 3asl_A E3 ubiquitin-protein li 57.2 2 6.9E-05 29.9 -0.2 44 210-253 20-68 (70)
131 1dvp_A HRS, hepatocyte growth 57.2 5.4 0.00019 33.7 2.5 33 208-240 161-194 (220)
132 4fo9_A E3 SUMO-protein ligase 56.9 8.8 0.0003 35.2 4.0 46 208-256 215-265 (360)
133 3zyq_A Hepatocyte growth facto 56.7 5.6 0.00019 33.9 2.5 34 208-241 164-198 (226)
134 1wfk_A Zinc finger, FYVE domai 56.6 7.4 0.00025 28.2 2.8 51 207-257 8-66 (88)
135 2ku3_A Bromodomain-containing 54.0 11 0.00037 26.2 3.2 48 206-253 14-65 (71)
136 2o35_A Hypothetical protein DU 53.3 5.1 0.00018 30.0 1.4 12 233-244 43-54 (105)
137 3fyb_A Protein of unknown func 53.2 5.2 0.00018 29.9 1.4 11 233-243 42-52 (104)
138 2xb1_A Pygopus homolog 2, B-ce 51.6 8.4 0.00029 28.9 2.5 49 208-256 3-63 (105)
139 1iml_A CRIP, cysteine rich int 49.1 9.7 0.00033 26.0 2.3 42 207-252 26-68 (76)
140 3mpx_A FYVE, rhogef and PH dom 47.3 4 0.00014 37.7 0.0 49 207-255 374-430 (434)
141 1wew_A DNA-binding family prot 46.7 18 0.0006 25.4 3.4 47 207-254 15-72 (78)
142 2g6q_A Inhibitor of growth pro 45.6 4 0.00014 27.7 -0.2 43 207-253 10-59 (62)
143 2ysm_A Myeloid/lymphoid or mix 45.0 4 0.00014 30.6 -0.3 45 209-253 55-103 (111)
144 2cu8_A Cysteine-rich protein 2 44.1 17 0.00057 24.8 2.9 41 208-258 9-49 (76)
145 1zbd_B Rabphilin-3A; G protein 43.8 11 0.00037 29.6 2.1 33 207-239 54-88 (134)
146 1x64_A Alpha-actinin-2 associa 41.3 40 0.0014 23.6 4.7 41 207-258 24-64 (89)
147 2jvx_A NF-kappa-B essential mo 40.6 6.7 0.00023 22.5 0.2 12 246-257 4-15 (28)
148 1wee_A PHD finger family prote 40.3 15 0.00051 25.3 2.1 47 207-254 15-66 (72)
149 2dj7_A Actin-binding LIM prote 39.2 32 0.0011 23.8 3.8 41 207-257 14-54 (80)
150 1zfo_A LAsp-1; LIM domain, zin 38.6 20 0.00067 20.5 2.1 27 209-237 4-30 (31)
151 2pv0_B DNA (cytosine-5)-methyl 38.0 21 0.00072 33.0 3.3 45 206-253 91-147 (386)
152 1x62_A C-terminal LIM domain p 36.9 45 0.0015 22.7 4.3 38 208-256 15-52 (79)
153 3a1b_A DNA (cytosine-5)-methyl 34.8 22 0.00076 28.8 2.6 34 207-243 78-113 (159)
154 1x63_A Skeletal muscle LIM-pro 34.2 37 0.0013 23.2 3.5 42 208-258 15-56 (82)
155 2rqw_B 24-meric peptide from s 33.2 13 0.00046 20.7 0.7 11 18-28 7-17 (26)
156 2co8_A NEDD9 interacting prote 33.0 39 0.0013 23.4 3.4 42 208-259 15-56 (82)
157 2l9u_A Receptor tyrosine-prote 32.7 43 0.0015 20.1 2.9 8 46-53 17-24 (40)
158 2gmg_A Hypothetical protein PF 32.6 6.6 0.00023 29.7 -0.8 25 226-255 70-94 (105)
159 2zet_C Melanophilin; complex, 32.5 27 0.00093 28.0 2.8 46 207-253 67-116 (153)
160 3kv5_D JMJC domain-containing 32.0 24 0.00081 33.7 2.7 44 211-254 39-88 (488)
161 2d8y_A Eplin protein; LIM doma 32.0 86 0.0029 21.9 5.2 41 208-258 15-55 (91)
162 1g47_A Pinch protein; LIM doma 30.6 45 0.0015 22.4 3.4 42 208-258 11-52 (77)
163 2d8z_A Four and A half LIM dom 30.2 53 0.0018 21.6 3.6 38 209-257 6-43 (70)
164 1wd2_A Ariadne-1 protein homol 29.7 7 0.00024 26.3 -1.0 36 209-244 7-47 (60)
165 1x4k_A Skeletal muscle LIM-pro 29.3 42 0.0014 22.2 3.0 41 209-258 6-46 (72)
166 1jdm_A Sarcolipin; helix, memb 29.2 44 0.0015 19.1 2.5 25 32-56 6-30 (31)
167 1x61_A Thyroid receptor intera 28.8 55 0.0019 21.6 3.5 38 210-256 7-44 (72)
168 2ku7_A MLL1 PHD3-CYP33 RRM chi 28.1 55 0.0019 24.3 3.8 28 229-256 8-46 (140)
169 2l3k_A Rhombotin-2, linker, LI 28.0 35 0.0012 25.6 2.6 37 206-243 34-70 (123)
170 1a7i_A QCRP2 (LIM1); LIM domai 27.5 25 0.00087 24.1 1.6 40 209-258 8-47 (81)
171 3f6q_B LIM and senescent cell 27.3 28 0.00094 23.0 1.7 42 208-258 11-52 (72)
172 2cor_A Pinch protein; LIM doma 26.7 62 0.0021 22.1 3.6 40 208-258 15-54 (79)
173 1wyh_A SLIM 2, skeletal muscle 26.5 58 0.002 21.5 3.3 41 209-258 6-46 (72)
174 1nyp_A Pinch protein; LIM doma 26.1 49 0.0017 21.5 2.8 38 209-257 6-43 (66)
175 1x4l_A Skeletal muscle LIM-pro 26.0 63 0.0021 21.4 3.4 40 209-257 6-47 (72)
176 3mjh_B Early endosome antigen 25.3 21 0.00073 21.3 0.7 9 209-217 6-14 (34)
177 2rsd_A E3 SUMO-protein ligase 24.5 28 0.00097 23.6 1.3 46 207-253 9-64 (68)
178 2jmo_A Parkin; IBR, E3 ligase, 24.5 6.4 0.00022 27.9 -2.1 14 228-241 55-68 (80)
179 3kv4_A PHD finger protein 8; e 23.9 16 0.00055 34.5 -0.1 46 210-255 6-57 (447)
180 2d8x_A Protein pinch; LIM doma 23.5 43 0.0015 22.1 2.2 39 209-258 6-44 (70)
181 1x6a_A LIMK-2, LIM domain kina 21.8 63 0.0022 21.9 2.8 38 209-257 16-53 (81)
182 1m3v_A FLIN4, fusion of the LI 21.2 60 0.0021 24.2 2.8 50 207-257 31-81 (122)
183 1wig_A KIAA1808 protein; LIM d 21.1 72 0.0025 21.4 2.9 36 210-256 7-42 (73)
184 2cur_A Skeletal muscle LIM-pro 20.9 53 0.0018 21.5 2.2 37 209-256 6-42 (69)
185 2l4z_A DNA endonuclease RBBP8, 20.4 1.2E+02 0.0042 22.7 4.4 39 208-256 61-99 (123)
186 1v6g_A Actin binding LIM prote 20.3 55 0.0019 22.3 2.2 39 209-258 16-54 (81)
187 1wfp_A Zinc finger (AN1-like) 20.0 1E+02 0.0035 21.6 3.5 28 207-236 24-51 (74)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.68 E-value=5.7e-17 Score=122.69 Aligned_cols=79 Identities=30% Similarity=0.701 Sum_probs=66.2
Q ss_pred CCCCCCCCHHHHhhCCceeeeccCCCCCCCcccCCCCCChhhhhhhcccccCCCCCCCCccccccccccccCCeeEEeCC
Q 024056 150 VPTAASMSEEEINTLPVHKYKVSGSQSGASSMQLGSSSSPAEKKLETSISVGNLKTEDELTCTVCLEQVNVGEIVRSLPC 229 (273)
Q Consensus 150 ~~~~~~ls~~~I~~Lp~~~~k~~~~~~g~~~~~~~ss~s~~~~~~~~~~~~~~~~~~~~~~C~ICle~~~~~~~v~~lpC 229 (273)
.....+++++.|+.||...+..... ..+++..|+||++.+..++.+..+||
T Consensus 11 ~~~~~~~s~~~i~~lp~~~~~~~~~-----------------------------~~~~~~~C~IC~~~~~~~~~~~~l~C 61 (91)
T 2l0b_A 11 MVANPPASKESIDALPEILVTEDHG-----------------------------AVGQEMCCPICCSEYVKGDVATELPC 61 (91)
T ss_dssp SSCCCCCCHHHHHTSCEEECCTTCS-----------------------------SSSSCSEETTTTEECCTTCEEEEETT
T ss_pred CcCCCCCCHHHHHhCCCeeeccccc-----------------------------ccCCCCCCcccChhhcCCCcEEecCC
Confidence 3456789999999999887653221 11356689999999999888899999
Q ss_pred CCccChhhHHHHHhcCCCcccccccccC
Q 024056 230 LHQFHANCIDPWLRQQGTCPVCKLRAGS 257 (273)
Q Consensus 230 ~H~FH~~CI~~WL~~~~~CP~CR~~v~~ 257 (273)
||.||..||.+|++.+.+||+||..+..
T Consensus 62 ~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 62 HHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp TEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 9999999999999999999999998764
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=1.7e-15 Score=110.13 Aligned_cols=53 Identities=38% Similarity=1.050 Sum_probs=48.4
Q ss_pred CCCccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCcccccccccCC
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSG 258 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v~~~ 258 (273)
+++..|+||++.+..++.+..+||+|.||..||.+|++.+.+||+||+.+...
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 35668999999999999999999999999999999999999999999988654
No 3
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.55 E-value=5.5e-15 Score=105.49 Aligned_cols=54 Identities=41% Similarity=0.992 Sum_probs=48.6
Q ss_pred CCCccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCcccccccccCCC
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSGW 259 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v~~~~ 259 (273)
+++..|+||++.+..++.+..++|||.||..||.+|++.+.+||+||..+....
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQL 65 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCcC
Confidence 456689999999988888889999999999999999999999999999887654
No 4
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.55 E-value=5.1e-15 Score=115.88 Aligned_cols=62 Identities=27% Similarity=0.520 Sum_probs=49.5
Q ss_pred CCccccccccccccCC---------------eeEEeCCCCccChhhHHHHH-----hcCCCcccccccccCCCCCCcccc
Q 024056 207 DELTCTVCLEQVNVGE---------------IVRSLPCLHQFHANCIDPWL-----RQQGTCPVCKLRAGSGWHETRQVE 266 (273)
Q Consensus 207 ~~~~C~ICle~~~~~~---------------~v~~lpC~H~FH~~CI~~WL-----~~~~~CP~CR~~v~~~~~~~~~~~ 266 (273)
.+..|+||++.|..+. .+..++|+|.||..||.+|+ +.+.+||+||..+.....+...+.
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g~qp~g~ 103 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGTQPWGK 103 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSSSCTTSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCCCCCCCe
Confidence 4568999999997643 34467899999999999999 456789999999988777666655
Q ss_pred cc
Q 024056 267 MD 268 (273)
Q Consensus 267 ~~ 268 (273)
+.
T Consensus 104 m~ 105 (114)
T 1v87_A 104 ME 105 (114)
T ss_dssp CC
T ss_pred EE
Confidence 43
No 5
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=8.1e-15 Score=106.03 Aligned_cols=56 Identities=29% Similarity=0.650 Sum_probs=49.9
Q ss_pred CCCccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCcccccccccCCCCC
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSGWHE 261 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v~~~~~~ 261 (273)
.++..|+||++.+..++.+..++|+|.||..||.+|++.+.+||+||..+......
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 68 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQL 68 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSCCSC
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccccccc
Confidence 45678999999999888888899999999999999999999999999998765443
No 6
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.53 E-value=1.1e-14 Score=106.48 Aligned_cols=56 Identities=45% Similarity=0.945 Sum_probs=49.8
Q ss_pred CCCccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCcccccccccCCCCC
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSGWHE 261 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v~~~~~~ 261 (273)
.++..|+||++.|..++.+..++|+|.||..||.+|++.+.+||+||..+......
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 68 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTA 68 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSC
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcccC
Confidence 45678999999999888888899999999999999999999999999998765443
No 7
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.52 E-value=4.8e-15 Score=101.07 Aligned_cols=50 Identities=48% Similarity=1.077 Sum_probs=45.7
Q ss_pred CCccccccccccccCCeeEEeC-CCCccChhhHHHHHhcCCCccccccccc
Q 024056 207 DELTCTVCLEQVNVGEIVRSLP-CLHQFHANCIDPWLRQQGTCPVCKLRAG 256 (273)
Q Consensus 207 ~~~~C~ICle~~~~~~~v~~lp-C~H~FH~~CI~~WL~~~~~CP~CR~~v~ 256 (273)
++..|+||++.+..++.+..++ |||.||..||.+|++.+.+||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 5568999999999988888898 9999999999999999999999998764
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.44 E-value=6.8e-14 Score=95.18 Aligned_cols=50 Identities=28% Similarity=0.749 Sum_probs=43.4
Q ss_pred CCccccccccccccC-CeeEEeCCCCccChhhHHHHHhcCCCccccccccc
Q 024056 207 DELTCTVCLEQVNVG-EIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAG 256 (273)
Q Consensus 207 ~~~~C~ICle~~~~~-~~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v~ 256 (273)
++..|+||++.+..+ +.+..++|+|.||..||.+|++.+.+||+||..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 456899999999653 45678899999999999999999999999998764
No 9
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=5e-14 Score=104.24 Aligned_cols=51 Identities=31% Similarity=0.686 Sum_probs=41.2
Q ss_pred CCcccccccccccc-----------CCeeEEeC-CCCccChhhHHHHHhcCCCcccccccccC
Q 024056 207 DELTCTVCLEQVNV-----------GEIVRSLP-CLHQFHANCIDPWLRQQGTCPVCKLRAGS 257 (273)
Q Consensus 207 ~~~~C~ICle~~~~-----------~~~v~~lp-C~H~FH~~CI~~WL~~~~~CP~CR~~v~~ 257 (273)
++..|+||++.+.. ++.+..++ |+|.||.+||.+|++++.+||+||+.+..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 45568888888753 44455665 99999999999999999999999998754
No 10
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=7.8e-14 Score=98.96 Aligned_cols=52 Identities=23% Similarity=0.672 Sum_probs=44.9
Q ss_pred CCCccccccccccccC----CeeEEeCCCCccChhhHHHHHhcCCCcccccccccC
Q 024056 206 EDELTCTVCLEQVNVG----EIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGS 257 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~----~~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v~~ 257 (273)
.+...|+||++.+..+ +.+..++|||.||..||.+|++.+.+||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 4567899999999753 345778999999999999999999999999998764
No 11
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.42 E-value=6.7e-14 Score=100.06 Aligned_cols=54 Identities=22% Similarity=0.631 Sum_probs=46.4
Q ss_pred CCCccccccccccccC----CeeEEeCCCCccChhhHHHHHhcCCCcccccccccCCC
Q 024056 206 EDELTCTVCLEQVNVG----EIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSGW 259 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~----~~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v~~~~ 259 (273)
+++..|+||++.+..+ +.+..++|||.||..||.+|++.+.+||+||..+....
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 65 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCS
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhh
Confidence 4567899999998753 55578899999999999999999999999999887543
No 12
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.40 E-value=2.1e-13 Score=96.78 Aligned_cols=50 Identities=42% Similarity=0.885 Sum_probs=43.7
Q ss_pred CCccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCcccccccccCC
Q 024056 207 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSG 258 (273)
Q Consensus 207 ~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v~~~ 258 (273)
++..|+||++.+.. .+..++|||.||..||.+|++.+.+||+||..+...
T Consensus 4 ~~~~C~IC~~~~~~--~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 53 (68)
T 1chc_A 4 VAERCPICLEDPSN--YSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESV 53 (68)
T ss_dssp CCCCCSSCCSCCCS--CEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCCE
T ss_pred CCCCCeeCCccccC--CcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHhh
Confidence 45689999999874 357789999999999999999999999999988754
No 13
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.38 E-value=1.9e-13 Score=95.54 Aligned_cols=52 Identities=23% Similarity=0.649 Sum_probs=44.9
Q ss_pred CCccccccccccccC----CeeEEeCCCCccChhhHHHHHhcCCCcccccccccCC
Q 024056 207 DELTCTVCLEQVNVG----EIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSG 258 (273)
Q Consensus 207 ~~~~C~ICle~~~~~----~~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v~~~ 258 (273)
++..|+||++.+..+ +.+..++|||.||..||.+|++.+.+||+||..+...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 57 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence 356899999999753 4557789999999999999999999999999988764
No 14
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.37 E-value=3.4e-13 Score=104.97 Aligned_cols=50 Identities=26% Similarity=0.511 Sum_probs=42.7
Q ss_pred CCccccccccccccCC---------------eeEEeCCCCccChhhHHHHHhcCCCccccccccc
Q 024056 207 DELTCTVCLEQVNVGE---------------IVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAG 256 (273)
Q Consensus 207 ~~~~C~ICle~~~~~~---------------~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v~ 256 (273)
+++.|+||++.|..+. .+..++|+|.||..||.+||+.+.+||+||+.+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 4568999999988541 3667889999999999999999999999999753
No 15
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=7.1e-13 Score=95.43 Aligned_cols=53 Identities=21% Similarity=0.478 Sum_probs=44.8
Q ss_pred CCCccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCcccccccccCCCC
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSGWH 260 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v~~~~~ 260 (273)
++...|+||++.+..+ +..++|||.||..||.+|++.+.+||+||..+.....
T Consensus 13 ~~~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 65 (72)
T 2djb_A 13 TPYILCSICKGYLIDA--TTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQP 65 (72)
T ss_dssp CGGGSCTTTSSCCSSC--EECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCS
T ss_pred CCCCCCCCCChHHHCc--CEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcccc
Confidence 4677899999999864 3334899999999999999999999999998876543
No 16
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=2.4e-13 Score=97.70 Aligned_cols=50 Identities=24% Similarity=0.484 Sum_probs=44.1
Q ss_pred CCCccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCcccccccccCC
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSG 258 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v~~~ 258 (273)
.++..|+||++.+..+ ..++|||.||..||.+|+..+.+||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 13 LTVPECAICLQTCVHP---VSLPCKHVFCYLCVKGASWLGKRCALCRQEIPED 62 (71)
T ss_dssp SSCCBCSSSSSBCSSE---EEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHH
T ss_pred CCCCCCccCCcccCCC---EEccCCCHHHHHHHHHHHHCCCcCcCcCchhCHh
Confidence 4567899999999765 6789999999999999999999999999988643
No 17
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=3.7e-13 Score=96.18 Aligned_cols=51 Identities=33% Similarity=0.862 Sum_probs=44.7
Q ss_pred CCCccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCcccccccccCCCC
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSGWH 260 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v~~~~~ 260 (273)
.+...|+||++.+.. ..++|||.||..||.+|++.+.+||+||..+.....
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 63 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANE 63 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCCC
T ss_pred CCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCCc
Confidence 456789999999875 678999999999999999999999999998875543
No 18
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=9.7e-13 Score=96.77 Aligned_cols=48 Identities=23% Similarity=0.521 Sum_probs=43.0
Q ss_pred CCCccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCccccccccc
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAG 256 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v~ 256 (273)
++...|+||++.+..+ ..++|||.||..||.+|++...+||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQNP---VVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCSE---EECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcCe---eEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 4567899999999765 56899999999999999999999999999986
No 19
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=2.5e-12 Score=95.51 Aligned_cols=53 Identities=23% Similarity=0.591 Sum_probs=45.3
Q ss_pred CCCccccccccccccCCe-eEEeCCCCccChhhHHHHHhcC---CCcccccccccCC
Q 024056 206 EDELTCTVCLEQVNVGEI-VRSLPCLHQFHANCIDPWLRQQ---GTCPVCKLRAGSG 258 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~-v~~lpC~H~FH~~CI~~WL~~~---~~CP~CR~~v~~~ 258 (273)
.+...|+||++.+...+. ...++|||.||..||.+|++.+ .+||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 466789999999987553 5778999999999999999876 7899999987654
No 20
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.31 E-value=2.1e-12 Score=93.52 Aligned_cols=48 Identities=29% Similarity=0.672 Sum_probs=41.9
Q ss_pred CCCccccccccccccCCeeEEeC-CCCccChhhHHHHHhcC--CCccccccccc
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLP-CLHQFHANCIDPWLRQQ--GTCPVCKLRAG 256 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lp-C~H~FH~~CI~~WL~~~--~~CP~CR~~v~ 256 (273)
.++..|+||++.+..+ ..++ |||.||..||.+|++.+ .+||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 13 PDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp CGGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred CCCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 4677899999999976 6689 99999999999999875 68999999654
No 21
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=1.3e-12 Score=92.30 Aligned_cols=50 Identities=22% Similarity=0.521 Sum_probs=42.8
Q ss_pred CCCccccccccccccCCeeEEeCCCCccChhhHHHHHh-cCCCcccccccccCC
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLR-QQGTCPVCKLRAGSG 258 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~-~~~~CP~CR~~v~~~ 258 (273)
.+...|+||++.+..+ ..++|||.||..||.+|++ .+.+||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSP---KQTECGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CCCEECTTTCCEESSC---CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CcCCCCCCCChHhcCe---eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 4677899999999866 4479999999999999995 567899999988754
No 22
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.30 E-value=5.2e-13 Score=108.25 Aligned_cols=49 Identities=33% Similarity=0.843 Sum_probs=43.6
Q ss_pred CCccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCcccccccccCC
Q 024056 207 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSG 258 (273)
Q Consensus 207 ~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v~~~ 258 (273)
++..|+||++.+..+ ..+||||.||..||..|+..+.+||+||..+...
T Consensus 52 ~~~~C~iC~~~~~~~---~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 52 NELQCIICSEYFIEA---VTLNCAHSFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp HHSBCTTTCSBCSSE---EEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred ccCCCcccCcccCCc---eECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 456899999999865 6789999999999999999999999999988654
No 23
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=2.5e-12 Score=95.12 Aligned_cols=53 Identities=21% Similarity=0.549 Sum_probs=44.4
Q ss_pred CCCccccccccccccCCeeEEeCCC-----CccChhhHHHHHhcC--CCcccccccccCCC
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLPCL-----HQFHANCIDPWLRQQ--GTCPVCKLRAGSGW 259 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lpC~-----H~FH~~CI~~WL~~~--~~CP~CR~~v~~~~ 259 (273)
.++..|.||++++..++.+ .+||. |.||.+||++||..+ .+||+||+.+....
T Consensus 13 ~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 4566899999999877766 58996 999999999999875 48999999886544
No 24
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=2.3e-12 Score=92.53 Aligned_cols=50 Identities=26% Similarity=0.631 Sum_probs=42.6
Q ss_pred CCCccccccccccccCCeeEEeCCCCccChhhHHHHHh---cCCCcccccccccCC
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLR---QQGTCPVCKLRAGSG 258 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~---~~~~CP~CR~~v~~~ 258 (273)
.++..|+||++.+..+ ..++|||.||..||.+|++ .+..||+||..+...
T Consensus 18 ~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 18 QEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCCBCTTTCSBCSSE---EECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred ccCCEeccCCcccCCe---EEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 5677899999999855 5679999999999999997 456899999988654
No 25
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.27 E-value=3.2e-12 Score=93.11 Aligned_cols=50 Identities=18% Similarity=0.374 Sum_probs=43.8
Q ss_pred CCCccccccccccccCCeeEEeCCCCccChhhHHHHHhc-CCCcccccccccCC
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ-QGTCPVCKLRAGSG 258 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~-~~~CP~CR~~v~~~ 258 (273)
.++..|+||++.+..+ ..++|||.||..||.+|++. +.+||+||..+...
T Consensus 6 ~~~~~C~IC~~~~~~P---v~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 6 PEYFRCPISLELMKDP---VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHA 56 (78)
T ss_dssp SSSSSCTTTSCCCSSE---EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred cccCCCCCccccccCC---EEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence 4677999999999866 56799999999999999987 78899999988654
No 26
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.25 E-value=7.6e-13 Score=104.71 Aligned_cols=50 Identities=26% Similarity=0.511 Sum_probs=1.0
Q ss_pred CCccccccccccccCC---------------eeEEeCCCCccChhhHHHHHhcCCCccccccccc
Q 024056 207 DELTCTVCLEQVNVGE---------------IVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAG 256 (273)
Q Consensus 207 ~~~~C~ICle~~~~~~---------------~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v~ 256 (273)
+++.|+||++.|..+. .+..++|+|.||..||.+||+.+.+||+||+.+.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CC---------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 4568999999997531 2333579999999999999999999999999754
No 27
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.23 E-value=7.7e-12 Score=91.88 Aligned_cols=50 Identities=36% Similarity=0.782 Sum_probs=43.6
Q ss_pred CCCccccccccccccCCeeEEeCCCCccChhhHHHHHhc------CCCcccccccccCC
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ------QGTCPVCKLRAGSG 258 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~------~~~CP~CR~~v~~~ 258 (273)
.++..|+||++.+..+ ..++|||.||..||..|+.. ...||.||..+...
T Consensus 17 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 17 KEEVTCPICLELLKEP---VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp CTTTSCTTTCSCCSSC---EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred ccCCCCcCCChhhCcc---eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 4567899999999876 57899999999999999987 66899999988754
No 28
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.22 E-value=2.5e-12 Score=98.64 Aligned_cols=50 Identities=24% Similarity=0.624 Sum_probs=42.6
Q ss_pred CCCccccccccccccCCeeEEeCCCCccChhhHHHHHhcC-CCcccccccccC
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQ-GTCPVCKLRAGS 257 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~-~~CP~CR~~v~~ 257 (273)
.++..|+||++.+..+ +..++|||.||..||.+|++.+ .+||+||..+..
T Consensus 20 ~~~~~C~IC~~~~~~p--~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 20 AEVFRCFICMEKLRDA--RLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HHHTBCTTTCSBCSSE--EECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCccCCccccCc--cccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 3567899999999854 3338999999999999999987 699999998854
No 29
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=1.2e-11 Score=86.52 Aligned_cols=43 Identities=28% Similarity=0.723 Sum_probs=37.7
Q ss_pred CCCccccccccccccCCeeEEeCCCCccChhhHHHHHh---cCCCcccc
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLR---QQGTCPVC 251 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~---~~~~CP~C 251 (273)
+++..|+||++.+..+ ..++|||.||..||.+|++ .+.+||+|
T Consensus 18 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSSC---EECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhCCe---EEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 5677899999999966 6679999999999999998 45689998
No 30
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.20 E-value=7.2e-12 Score=99.44 Aligned_cols=54 Identities=22% Similarity=0.616 Sum_probs=46.7
Q ss_pred CCccccccccccccC----CeeEEeCCCCccChhhHHHHHhcCCCcccccccccCCCC
Q 024056 207 DELTCTVCLEQVNVG----EIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSGWH 260 (273)
Q Consensus 207 ~~~~C~ICle~~~~~----~~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v~~~~~ 260 (273)
++..|+||++.+..+ +.+..++|||.||..||.+|++.+.+||+||..+.....
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l 63 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 63 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCE
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccccc
Confidence 567899999999754 455788999999999999999999999999998876544
No 31
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.20 E-value=2.8e-12 Score=93.37 Aligned_cols=50 Identities=32% Similarity=0.700 Sum_probs=43.1
Q ss_pred CCCccccccccccccCCeeEEeCCCCccChhhHHHHHhc-------CCCcccccccccCC
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ-------QGTCPVCKLRAGSG 258 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~-------~~~CP~CR~~v~~~ 258 (273)
+++..|+||++.+..+ ..++|||.||..||.+|++. ...||+||..+...
T Consensus 10 ~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 10 QEEVTCPICLELLTEP---LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE 66 (79)
T ss_dssp CCCCEETTTTEECSSC---CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred ccCCCCcCCCcccCCe---eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence 4677899999999866 55899999999999999987 56899999988753
No 32
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=1.1e-11 Score=91.00 Aligned_cols=50 Identities=32% Similarity=0.784 Sum_probs=43.5
Q ss_pred CCCccccccccccccCCeeEEeCCCCccChhhHHHHHhc------CCCcccccccccCC
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ------QGTCPVCKLRAGSG 258 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~------~~~CP~CR~~v~~~ 258 (273)
.+...|+||++.+..+ ..++|||.||..||..|++. ...||.||..+...
T Consensus 17 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 17 KEEVTCPICLELLTQP---LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE 72 (85)
T ss_dssp CCCCCCTTTCSCCSSC---BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred cCCCCCCCCCcccCCc---eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence 4567899999999865 56799999999999999987 77899999988753
No 33
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.19 E-value=9.1e-12 Score=96.52 Aligned_cols=51 Identities=25% Similarity=0.636 Sum_probs=43.8
Q ss_pred CCCccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCcccccccccCC
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSG 258 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v~~~ 258 (273)
.++..|+||++.+..+ +..++|||.||..||..|+..+.+||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDA--TTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GGGTBCTTTSSBCSSE--EEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred CCcCCCccCChHHhCc--CEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 3577899999999854 43349999999999999999999999999988764
No 34
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.18 E-value=6.5e-12 Score=95.77 Aligned_cols=49 Identities=29% Similarity=0.710 Sum_probs=42.2
Q ss_pred CCccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCcccccccccC
Q 024056 207 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGS 257 (273)
Q Consensus 207 ~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v~~ 257 (273)
+...|+||++.+..+ +..++|||.||..||.+|+..+.+||+||..+..
T Consensus 21 ~~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNIA--MIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSSE--EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCcccCChhhCCc--CEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 467899999999854 3334899999999999999999999999998865
No 35
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.18 E-value=1.7e-11 Score=92.03 Aligned_cols=48 Identities=29% Similarity=0.672 Sum_probs=41.9
Q ss_pred CCCccccccccccccCCeeEEeC-CCCccChhhHHHHHhcC--CCccccccccc
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLP-CLHQFHANCIDPWLRQQ--GTCPVCKLRAG 256 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lp-C~H~FH~~CI~~WL~~~--~~CP~CR~~v~ 256 (273)
.++..|+||++.+..+ ..++ |||.||..||.+|+..+ ..||+||..+.
T Consensus 11 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 11 PDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CTTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CcCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 5678999999999976 6789 99999999999999754 58999999873
No 36
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.17 E-value=8.7e-12 Score=98.97 Aligned_cols=48 Identities=29% Similarity=0.679 Sum_probs=42.1
Q ss_pred CCccccccccccccCCeeEEeCCCCccChhhHHHHHhcCC-CcccccccccC
Q 024056 207 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQG-TCPVCKLRAGS 257 (273)
Q Consensus 207 ~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~-~CP~CR~~v~~ 257 (273)
++..|+||++.+..+ ..++|||.||..||..|+..+. +||+||..+..
T Consensus 51 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFRP---ITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcCc---EEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 456899999999965 6679999999999999998654 89999999876
No 37
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=1.3e-11 Score=84.54 Aligned_cols=43 Identities=37% Similarity=0.873 Sum_probs=36.9
Q ss_pred CCCccccccccccccCCeeEEeCCCCccChhhHHHHHh---cCCCcccc
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLR---QQGTCPVC 251 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~---~~~~CP~C 251 (273)
.+...|+||++.+..+ ..++|||.||..||.+|+. .+.+||+|
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEP---VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSC---CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCcc---EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 4567899999999876 5689999999999999954 56789998
No 38
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.15 E-value=2e-11 Score=85.90 Aligned_cols=52 Identities=21% Similarity=0.497 Sum_probs=41.5
Q ss_pred CCcccccccc-ccccCCee-EEeCCCCccChhhHHHHHhc-CCCcccccccccCC
Q 024056 207 DELTCTVCLE-QVNVGEIV-RSLPCLHQFHANCIDPWLRQ-QGTCPVCKLRAGSG 258 (273)
Q Consensus 207 ~~~~C~ICle-~~~~~~~v-~~lpC~H~FH~~CI~~WL~~-~~~CP~CR~~v~~~ 258 (273)
++..|+||++ .+..+... ..++|||.||..||.+|+.. ...||+||..+..+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKS 56 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccc
Confidence 3568999999 77765432 45789999999999999765 46799999988654
No 39
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.10 E-value=2.9e-11 Score=93.74 Aligned_cols=49 Identities=33% Similarity=0.626 Sum_probs=41.9
Q ss_pred CCccccccccccccCCeeEEeCCCCccChhhHHHHHhcCC---CcccccccccCC
Q 024056 207 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQG---TCPVCKLRAGSG 258 (273)
Q Consensus 207 ~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~---~CP~CR~~v~~~ 258 (273)
+...|+||++.+..+ ..++|||.||..||..|+..+. +||+||..+...
T Consensus 20 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 71 (112)
T 1jm7_A 20 KILECPICLELIKEP---VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR 71 (112)
T ss_dssp HHTSCSSSCCCCSSC---CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred CCCCCcccChhhcCe---EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHh
Confidence 456899999999866 4579999999999999998764 899999988754
No 40
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.09 E-value=2.8e-11 Score=100.63 Aligned_cols=50 Identities=36% Similarity=0.806 Sum_probs=42.3
Q ss_pred CCCccccccccccccCCeeEEeCCCCccChhhHHHHHhc-CCCcccccccccC
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ-QGTCPVCKLRAGS 257 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~-~~~CP~CR~~v~~ 257 (273)
.+...|+||++.+..+ +..++|||.||..||..|++. +..||+||..+..
T Consensus 52 ~~~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 52 HSELMCPICLDMLKNT--MTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHHBCTTTSSBCSSE--EEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCCcccChHhhCc--CEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 3566899999999854 444589999999999999997 7789999998854
No 41
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.09 E-value=4.4e-11 Score=94.84 Aligned_cols=53 Identities=23% Similarity=0.652 Sum_probs=45.5
Q ss_pred CCCccccccccccccC----CeeEEeCCCCccChhhHHHHHhcCCCcccccccccCC
Q 024056 206 EDELTCTVCLEQVNVG----EIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSG 258 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~----~~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v~~~ 258 (273)
++...|+||++.+..+ .....++|||.||..||.+|++.+++||+||..+..+
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 126 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChh
Confidence 4667899999998753 3446788999999999999999999999999988754
No 42
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.08 E-value=3.7e-11 Score=98.87 Aligned_cols=49 Identities=24% Similarity=0.659 Sum_probs=43.0
Q ss_pred CCccccccccccccCCeeEEeCCCCccChhhHHHHHhcCC-CcccccccccCC
Q 024056 207 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQG-TCPVCKLRAGSG 258 (273)
Q Consensus 207 ~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~-~CP~CR~~v~~~ 258 (273)
+...|+||++.+..+ ..++|||.||..||..|+.... +||+||..+...
T Consensus 77 ~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQP---VTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcCC---EEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 457899999999865 5689999999999999998765 899999998765
No 43
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.07 E-value=5.4e-11 Score=93.67 Aligned_cols=50 Identities=30% Similarity=0.604 Sum_probs=43.6
Q ss_pred CCCccccccccccccCCeeEEeCCCCccChhhHHHHHhcCC-CcccccccccCC
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQG-TCPVCKLRAGSG 258 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~-~CP~CR~~v~~~ 258 (273)
++...|+||++.+..+ ..++|||.||..||.+|++.+. +||+||..+...
T Consensus 16 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 16 ESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCcCChhhcCe---EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 5677999999999866 5689999999999999998765 999999988653
No 44
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.07 E-value=9.2e-11 Score=89.85 Aligned_cols=50 Identities=16% Similarity=0.047 Sum_probs=44.9
Q ss_pred CCCccccccccccccCCeeEEeCCC-CccChhhHHHHHhcCCCcccccccccCC
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLPCL-HQFHANCIDPWLRQQGTCPVCKLRAGSG 258 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lpC~-H~FH~~CI~~WL~~~~~CP~CR~~v~~~ 258 (273)
.++..|+||++.+..+ ..++|| |.|+..||.+|+..+.+||+||..+...
T Consensus 20 p~~~~CpI~~~~m~dP---V~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~ 70 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDP---VVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMD 70 (98)
T ss_dssp CTTTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTT
T ss_pred cHhcCCcCccccccCC---eECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChh
Confidence 4678999999999977 678999 9999999999999989999999988653
No 45
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.07 E-value=9.5e-11 Score=87.35 Aligned_cols=50 Identities=16% Similarity=0.043 Sum_probs=44.7
Q ss_pred CCCccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCcccccccccCC
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSG 258 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v~~~ 258 (273)
.+...|+||++.+..+ ..++|||.|+..||.+|+..+.+||.||..+...
T Consensus 12 p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDP---VRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTES 61 (85)
T ss_dssp CTTTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred chheECcccCchhcCC---eECCCCCEECHHHHHHHHhcCCCCCCCcCCCChH
Confidence 4678999999999977 6789999999999999999999999999987643
No 46
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.07 E-value=8.7e-11 Score=85.49 Aligned_cols=51 Identities=18% Similarity=0.473 Sum_probs=41.7
Q ss_pred CCCccccccccccccCCeeEEeCCCCccChhhHHHHHhcC--CCcccccccccCC
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQ--GTCPVCKLRAGSG 258 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~--~~CP~CR~~v~~~ 258 (273)
+....|+||.+.+..++. ...|+|.||..||.+||+++ .+||+||+.....
T Consensus 13 ~~i~~C~IC~~~i~~g~~--C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQS--CETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp SSSCBCSSSCCBCSSSEE--CSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred CCCCcCcchhhHcccCCc--cCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence 345689999999997632 23699999999999999987 7899999876543
No 47
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.06 E-value=1.7e-11 Score=95.88 Aligned_cols=49 Identities=29% Similarity=0.669 Sum_probs=42.6
Q ss_pred CCCccccccccccccCCeeEEeCCCCccChhhHHHHHhc-CCCcccccccccC
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ-QGTCPVCKLRAGS 257 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~-~~~CP~CR~~v~~ 257 (273)
.++..|+||++.+..+ ..++|||.||..||.+|+.. +.+||.||..+..
T Consensus 13 ~~~~~C~iC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEILVEP---VTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBCSSC---EECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCccCCcccCce---eEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 3567899999999876 67799999999999999976 6689999998763
No 48
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.02 E-value=8.2e-11 Score=92.13 Aligned_cols=50 Identities=22% Similarity=0.470 Sum_probs=43.1
Q ss_pred CCccccccccccccCCeeEEeCCCCccChhhHHHHHhc-CCCcccccccccCCC
Q 024056 207 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ-QGTCPVCKLRAGSGW 259 (273)
Q Consensus 207 ~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~-~~~CP~CR~~v~~~~ 259 (273)
++..|+||++.+..+ ..++|||.||..||.+|+.. +.+||+||..+....
T Consensus 22 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (116)
T 1rmd_A 22 KSISCQICEHILADP---VETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD 72 (116)
T ss_dssp HHTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCcHhcCc---EEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhh
Confidence 467899999999865 55899999999999999987 778999999887543
No 49
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.02 E-value=1.8e-10 Score=88.59 Aligned_cols=50 Identities=16% Similarity=0.050 Sum_probs=44.9
Q ss_pred CCCccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCcccccccccCC
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSG 258 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v~~~ 258 (273)
.+...|+||++.+..+ ..++|||.|+..||.+|+..+.+||.||..+...
T Consensus 27 p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 76 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDP---VRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTES 76 (100)
T ss_dssp STTTBCTTTCSBCSSE---EEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTT
T ss_pred cHhhCCcCccCcccCC---eECCCCCEEchHHHHHHHHcCCCCCCCCCCCChh
Confidence 4678999999999977 6789999999999999999999999999988653
No 50
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.01 E-value=3e-10 Score=83.39 Aligned_cols=55 Identities=24% Similarity=0.516 Sum_probs=42.8
Q ss_pred CCCccccccccccccCCeeEEe--CCCCccChhhHHHHHhc-CCCcccccccccCCCCC
Q 024056 206 EDELTCTVCLEQVNVGEIVRSL--PCLHQFHANCIDPWLRQ-QGTCPVCKLRAGSGWHE 261 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~l--pC~H~FH~~CI~~WL~~-~~~CP~CR~~v~~~~~~ 261 (273)
+++.+|+||++.+...+.. .+ +|||.||..|+..|+.. ...||.||..+......
T Consensus 9 ~~~~~CpICle~~~~~d~~-~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~ 66 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDIN-FFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAV 66 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTT-CCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSC
T ss_pred ccCCcCCccCccCcccccc-ccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCchh
Confidence 5677899999988654432 33 49999999999998754 56899999998765543
No 51
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.98 E-value=1.1e-10 Score=95.23 Aligned_cols=48 Identities=19% Similarity=0.461 Sum_probs=42.1
Q ss_pred CCCccccccccccccCCeeEEeCCCCccChhhHHHHHhcCC-Cccccccccc
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQG-TCPVCKLRAG 256 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~-~CP~CR~~v~ 256 (273)
++...|+||++.+..+ ..++|||.||..||.+|++... +||+||..+.
T Consensus 29 ~~~~~C~IC~~~~~~p---v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 29 EAKYLCSACRNVLRRP---FQAQCGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred CcCcCCCCCChhhcCc---EECCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 5678999999999876 5689999999999999998765 8999999764
No 52
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.95 E-value=2.7e-10 Score=80.37 Aligned_cols=48 Identities=19% Similarity=0.396 Sum_probs=40.6
Q ss_pred CCccccccccccccCCeeEEe--CCCCc-cChhhHHHHHhcCCCcccccccccC
Q 024056 207 DELTCTVCLEQVNVGEIVRSL--PCLHQ-FHANCIDPWLRQQGTCPVCKLRAGS 257 (273)
Q Consensus 207 ~~~~C~ICle~~~~~~~v~~l--pC~H~-FH~~CI~~WL~~~~~CP~CR~~v~~ 257 (273)
++..|.||++..... ..+ ||||. ||..|+..|.+.+..||+||..+..
T Consensus 7 ~~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 7 AIEPCVICQGRPKNG---CIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQM 57 (64)
T ss_dssp GGSCCTTTSSSCSCE---EEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCE
T ss_pred CcCCCCcCCCCCCCE---EEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhc
Confidence 456899999997744 344 99999 8999999999999999999998753
No 53
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.95 E-value=1.8e-10 Score=79.03 Aligned_cols=48 Identities=27% Similarity=0.639 Sum_probs=40.4
Q ss_pred CCCccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCcccccccccCCC
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSGW 259 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v~~~~ 259 (273)
.+...|+||++.+..+ ..++|||.||..||..| ...||+||+.+....
T Consensus 4 ~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP---KLLPCLHTLCSGCLEAS---GMQCPICQAPWPLGA 51 (56)
T ss_dssp CCCSSCSSSCSSCBCC---SCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCCS
T ss_pred ccCCCceEeCCccCCe---EEcCCCCcccHHHHccC---CCCCCcCCcEeecCC
Confidence 4567899999999976 67899999999999884 678999999876543
No 54
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.95 E-value=3.4e-10 Score=106.16 Aligned_cols=51 Identities=22% Similarity=0.548 Sum_probs=43.5
Q ss_pred CCccccccccccccCCeeEEeCCCCccChhhHHHHHh-cCCCcccccccccCCCC
Q 024056 207 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLR-QQGTCPVCKLRAGSGWH 260 (273)
Q Consensus 207 ~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~-~~~~CP~CR~~v~~~~~ 260 (273)
....|+||++.+..+ ..+||||.||..||.+|+. .+.+||+||..+.....
T Consensus 331 ~~~~C~ICle~~~~p---v~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~ 382 (389)
T 2y1n_A 331 TFQLCKICAENDKDV---KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEP 382 (389)
T ss_dssp SSSBCTTTSSSBCCE---EEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEEE
T ss_pred CCCCCCccCcCCCCe---EEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCcee
Confidence 346899999998754 7789999999999999999 68899999998876443
No 55
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.90 E-value=2.4e-10 Score=89.83 Aligned_cols=46 Identities=30% Similarity=0.605 Sum_probs=40.3
Q ss_pred CCccccccccccccCCeeEEe-CCCCccChhhHHHHHhcCCCcccccccccC
Q 024056 207 DELTCTVCLEQVNVGEIVRSL-PCLHQFHANCIDPWLRQQGTCPVCKLRAGS 257 (273)
Q Consensus 207 ~~~~C~ICle~~~~~~~v~~l-pC~H~FH~~CI~~WL~~~~~CP~CR~~v~~ 257 (273)
+...|+||++.+..+ ..+ +|||.||..||..|+. ..||+||..+..
T Consensus 21 ~~~~C~IC~~~~~~p---v~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 21 KLLRCSRCTNILREP---VCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWI 67 (117)
T ss_dssp HTTSCSSSCSCCSSC---BCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSC
T ss_pred hCCCCCCCChHhhCc---cEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCcc
Confidence 567899999999866 556 8999999999999988 889999998843
No 56
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.88 E-value=7e-10 Score=77.96 Aligned_cols=50 Identities=18% Similarity=0.324 Sum_probs=40.2
Q ss_pred CCccccccccccccCCeeEEeCCCCc-cChhhHHHHHhcCCCcccccccccC
Q 024056 207 DELTCTVCLEQVNVGEIVRSLPCLHQ-FHANCIDPWLRQQGTCPVCKLRAGS 257 (273)
Q Consensus 207 ~~~~C~ICle~~~~~~~v~~lpC~H~-FH~~CI~~WL~~~~~CP~CR~~v~~ 257 (273)
.+..|.||++..... .+..+||||. ||..|+.+|.+.+..||+||.++..
T Consensus 6 ~~~~C~IC~~~~~~~-~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 6 LLKPCSLCEKRPRDG-NIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQL 56 (63)
T ss_dssp GGSBCTTTSSSBSCE-EEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred cCCCCcccCCcCCCe-EEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence 455799999987643 1122399998 9999999999988999999998853
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.84 E-value=5.4e-10 Score=80.92 Aligned_cols=45 Identities=22% Similarity=0.533 Sum_probs=38.8
Q ss_pred CCccccccccccccCCeeEEeCCCCc-cChhhHHHHHhcCCCcccccccccCC
Q 024056 207 DELTCTVCLEQVNVGEIVRSLPCLHQ-FHANCIDPWLRQQGTCPVCKLRAGSG 258 (273)
Q Consensus 207 ~~~~C~ICle~~~~~~~v~~lpC~H~-FH~~CI~~WL~~~~~CP~CR~~v~~~ 258 (273)
++..|+||++.+... ..+||||. ||..|+..| ..||+||..+...
T Consensus 23 ~~~~C~iC~~~~~~~---~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 68 (74)
T 4ic3_A 23 EEKLCKICMDRNIAI---VFVPCGHLVTCKQCAEAV----DKCPMCYTVITFK 68 (74)
T ss_dssp HHTBCTTTSSSBCCE---EEETTCCBCCCHHHHTTC----SBCTTTCCBCSEE
T ss_pred cCCCCCCCCCCCCCE---EEcCCCChhHHHHhhhcC----ccCCCcCcCccCc
Confidence 456899999998755 67899999 999999998 8899999988653
No 58
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.81 E-value=2.2e-09 Score=95.26 Aligned_cols=49 Identities=16% Similarity=0.142 Sum_probs=42.6
Q ss_pred CCCccccccccccccCCeeEEeCCCCccChhhHHHHHhcC-CCcccccccccC
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQ-GTCPVCKLRAGS 257 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~-~~CP~CR~~v~~ 257 (273)
.+...|+||++.+..+ +++||||+||..||.+|+..+ .+||+||.++..
T Consensus 206 ~~~~~c~i~~~~~~dP---v~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 206 PDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CSTTBCTTTCSBCSSE---EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CcccCCcCcCCHhcCC---eECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 4677899999999977 678999999999999999874 459999998864
No 59
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.78 E-value=3.7e-10 Score=81.91 Aligned_cols=45 Identities=22% Similarity=0.541 Sum_probs=37.6
Q ss_pred CCccccccccccccCCeeEEeCCCCc-cChhhHHHHHhcCCCcccccccccCC
Q 024056 207 DELTCTVCLEQVNVGEIVRSLPCLHQ-FHANCIDPWLRQQGTCPVCKLRAGSG 258 (273)
Q Consensus 207 ~~~~C~ICle~~~~~~~v~~lpC~H~-FH~~CI~~WL~~~~~CP~CR~~v~~~ 258 (273)
++..|+||++.+... ..+||||. ||..|+.. ...||+||..+...
T Consensus 24 ~~~~C~IC~~~~~~~---~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 24 EEKLCKICMDRNIAI---VFVPCGHLVTCKQCAEA----VDKCPMCYTVITFK 69 (75)
T ss_dssp HHHSCSSSCSSCCCB---CCSSSCCCCBCHHHHHH----CSBCTTTCCBCCCC
T ss_pred CCCCCCcCCCCCCCE---EEecCCCHHHHHHHhhC----CCCCccCCceecCc
Confidence 456899999998765 56899999 99999954 47899999988664
No 60
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.78 E-value=2.2e-09 Score=89.48 Aligned_cols=50 Identities=28% Similarity=0.551 Sum_probs=43.3
Q ss_pred CCCccccccccccccCCeeEEeCCCCccChhhHHHHHhcC-CCcccccccccCC
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQ-GTCPVCKLRAGSG 258 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~-~~CP~CR~~v~~~ 258 (273)
++...|+||++.+..+ ..++|||.||..||.+|++.. .+||+||..+...
T Consensus 16 ~~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 16 ESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCChhhcCc---EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 5678999999999866 568999999999999999875 4999999988654
No 61
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.77 E-value=3e-09 Score=80.51 Aligned_cols=46 Identities=20% Similarity=0.483 Sum_probs=38.9
Q ss_pred CCCccccccccccccCCeeEEeC-CCCccChhhHHHHHhcC------CCccc--cccc
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLP-CLHQFHANCIDPWLRQQ------GTCPV--CKLR 254 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lp-C~H~FH~~CI~~WL~~~------~~CP~--CR~~ 254 (273)
.++..|+||++.|..+ ..++ |||.|+..||.+|+..+ .+||+ |+..
T Consensus 5 ~~~~~CPI~~~~~~dP---V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKP---VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCSSE---EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhcCC---EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 3577899999999966 5675 99999999999999864 48999 9855
No 62
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.74 E-value=2.3e-09 Score=98.55 Aligned_cols=55 Identities=29% Similarity=0.794 Sum_probs=42.3
Q ss_pred CCCccccccccccccCCee----EE-eCCCCccChhhHHHHHhcC-----------CCcccccccccCCCC
Q 024056 206 EDELTCTVCLEQVNVGEIV----RS-LPCLHQFHANCIDPWLRQQ-----------GTCPVCKLRAGSGWH 260 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v----~~-lpC~H~FH~~CI~~WL~~~-----------~~CP~CR~~v~~~~~ 260 (273)
+....|+||++.+..+..+ .. .+|+|.||..||.+||++. .+||.||.++...+.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~sf~ 376 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTSFA 376 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGGGG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCccHH
Confidence 3556899999999873222 22 3599999999999999752 469999999886654
No 63
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.66 E-value=1.8e-08 Score=71.88 Aligned_cols=48 Identities=25% Similarity=0.589 Sum_probs=39.4
Q ss_pred CCCccccccccccccCCeeEEeCCCCc-cChhhHHHHHhcCCCcccccccccCCCC
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLPCLHQ-FHANCIDPWLRQQGTCPVCKLRAGSGWH 260 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lpC~H~-FH~~CI~~WL~~~~~CP~CR~~v~~~~~ 260 (273)
++...|.||++..... ..+||||. ||..|+.. ...||+||..+.....
T Consensus 13 ~~~~~C~IC~~~~~~~---v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~~~~ 61 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNW---VLLPCRHTCLCDGCVKY----FQQCPMCRQFVQESFA 61 (68)
T ss_dssp CCSSCCSSSSSSCCCC---EETTTTBCCSCTTHHHH----CSSCTTTCCCCCCEEC
T ss_pred CCCCCCCCcCcCCCCE---EEECCCChhhhHHHHhc----CCCCCCCCcchhceEE
Confidence 4567899999987754 78999999 99999873 5789999998876443
No 64
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.64 E-value=1.8e-08 Score=70.21 Aligned_cols=49 Identities=24% Similarity=0.641 Sum_probs=38.0
Q ss_pred CCCccccccccccccCCeeEEeCC--CC---ccChhhHHHHHhc--CCCcccccccccC
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLPC--LH---QFHANCIDPWLRQ--QGTCPVCKLRAGS 257 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lpC--~H---~FH~~CI~~WL~~--~~~CP~CR~~v~~ 257 (273)
++...|.||+++.. +.+ .+|| .| .||.+|+.+|+.. +.+||+||+.+..
T Consensus 4 ~~~~~CrIC~~~~~--~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 4 EDVPVCWICNEELG--NER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CSCCEETTTTEECS--CCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCEeEEeecCCC--Cce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 45668999999843 333 5885 45 9999999999975 6789999998753
No 65
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.63 E-value=1.4e-08 Score=85.78 Aligned_cols=49 Identities=16% Similarity=0.133 Sum_probs=42.5
Q ss_pred CCCccccccccccccCCeeEEeCCCCccChhhHHHHHhcC-CCcccccccccC
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQ-GTCPVCKLRAGS 257 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~-~~CP~CR~~v~~ 257 (273)
.+...|+||++.+..+ ..+||||.|+..||..|+..+ .+||+|+.++..
T Consensus 104 p~~f~CPI~~elm~DP---V~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 104 PDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cHhhcccCccccCCCC---eECCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 4678999999999966 677999999999999999874 479999998764
No 66
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.60 E-value=2e-08 Score=75.73 Aligned_cols=48 Identities=21% Similarity=0.562 Sum_probs=39.3
Q ss_pred CCccccccccccccCCeeEEeCCCCccChhhHHHHHhc--------CCCccc--cccc
Q 024056 207 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ--------QGTCPV--CKLR 254 (273)
Q Consensus 207 ~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~--------~~~CP~--CR~~ 254 (273)
+..+|+||++.+..++.+...+|||.||..||.+++.. ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 45689999999987766555679999999999999863 136999 9987
No 67
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.58 E-value=2.2e-08 Score=89.00 Aligned_cols=50 Identities=26% Similarity=0.480 Sum_probs=41.9
Q ss_pred CCCccccccccccccCCeeEEeCCCCccChhhHHHHHhcC--CCccc--ccccccC
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQ--GTCPV--CKLRAGS 257 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~--~~CP~--CR~~v~~ 257 (273)
..+..|+||++.|.. +|+...|||.||..||.+|++.+ .+||+ ||..+..
T Consensus 179 ~~el~CPIcl~~f~D--PVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 179 KIELTCPITCKPYEA--PLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp BCCSBCTTTSSBCSS--EEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred ceeeECcCccCcccC--CeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 567899999999984 45556899999999999999864 46999 9987754
No 68
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.53 E-value=1.4e-08 Score=74.52 Aligned_cols=45 Identities=29% Similarity=0.648 Sum_probs=37.9
Q ss_pred CCccccccccccccCCeeEEeCCCCc-cChhhHHHHHhcCCCcccccccccCC
Q 024056 207 DELTCTVCLEQVNVGEIVRSLPCLHQ-FHANCIDPWLRQQGTCPVCKLRAGSG 258 (273)
Q Consensus 207 ~~~~C~ICle~~~~~~~v~~lpC~H~-FH~~CI~~WL~~~~~CP~CR~~v~~~ 258 (273)
++..|.||++.+... ..+||||. ||..|+..| ..||+||..+...
T Consensus 17 ~~~~C~IC~~~~~~~---v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 17 EAMLCMVCCEEEINS---TFCPCGHTVCCESCAAQL----QSCPVCRSRVEHV 62 (79)
T ss_dssp HHTBCTTTSSSBCCE---EEETTCBCCBCHHHHTTC----SBCTTTCCBCCEE
T ss_pred CCCEeEEeCcccCcE---EEECCCCHHHHHHHHHhc----CcCCCCCchhhCe
Confidence 455899999987754 77899999 999999877 4999999988765
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.42 E-value=4.8e-08 Score=90.52 Aligned_cols=46 Identities=26% Similarity=0.622 Sum_probs=39.4
Q ss_pred CCCccccccccccccCCeeEEeCCCCc-cChhhHHHHHhcCCCcccccccccCC
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLPCLHQ-FHANCIDPWLRQQGTCPVCKLRAGSG 258 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lpC~H~-FH~~CI~~WL~~~~~CP~CR~~v~~~ 258 (273)
+++..|+||++.+... ..+||||. ||..|+..| ..||+||..+...
T Consensus 293 ~~~~~C~IC~~~~~~~---v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~~ 339 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSV---VFIPCGHLVVCQECAPSL----RKCPICRGIIKGT 339 (345)
T ss_dssp HTTCBCTTTSSSBCCE---EEETTCCEEECTTTGGGC----SBCTTTCCBCCEE
T ss_pred cCCCCCCccCCcCCce---EEcCCCChhHhHHHHhcC----CcCCCCCCCccCe
Confidence 3567899999998865 67899999 999999988 7899999988643
No 70
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.40 E-value=8.7e-08 Score=66.86 Aligned_cols=48 Identities=8% Similarity=0.145 Sum_probs=41.4
Q ss_pred ccccccccccccCCeeEEe-CCCCccChhhHHHHHhcCCCcccccccccCCC
Q 024056 209 LTCTVCLEQVNVGEIVRSL-PCLHQFHANCIDPWLRQQGTCPVCKLRAGSGW 259 (273)
Q Consensus 209 ~~C~ICle~~~~~~~v~~l-pC~H~FH~~CI~~WL~~~~~CP~CR~~v~~~~ 259 (273)
..|+||++.+..+ ..+ +|||.|...||.+|++.+.+||+++.++....
T Consensus 4 ~~CpIs~~~m~dP---V~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~ 52 (61)
T 2bay_A 4 MLCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEE 52 (61)
T ss_dssp CCCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGG
T ss_pred EEecCCCCCCCCC---EEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhh
Confidence 5799999999955 455 79999999999999999889999999886543
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.01 E-value=3.8e-06 Score=63.77 Aligned_cols=49 Identities=22% Similarity=0.417 Sum_probs=39.2
Q ss_pred cccccccccccCCeeEEeCCCCccChhhHHHHHhc-CCCcccccccccCCCC
Q 024056 210 TCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ-QGTCPVCKLRAGSGWH 260 (273)
Q Consensus 210 ~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~-~~~CP~CR~~v~~~~~ 260 (273)
-|.+|--.+. ...+..||+|.||.+|+..|.++ .++||.|+.++..-..
T Consensus 3 fC~~C~~Pi~--iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe~ 52 (101)
T 3vk6_A 3 FCDKCGLPIK--VYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQ 52 (101)
T ss_dssp BCTTTCSBCS--EEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEEE
T ss_pred ecCccCCCeE--EEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeEE
Confidence 3777877766 34578999999999999999855 6889999998865443
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.82 E-value=1.7e-05 Score=69.75 Aligned_cols=49 Identities=20% Similarity=0.518 Sum_probs=39.9
Q ss_pred CCccccccccccccCCeeEEeC-CCCccChhhHHHHHhcCC--CcccccccccCC
Q 024056 207 DELTCTVCLEQVNVGEIVRSLP-CLHQFHANCIDPWLRQQG--TCPVCKLRAGSG 258 (273)
Q Consensus 207 ~~~~C~ICle~~~~~~~v~~lp-C~H~FH~~CI~~WL~~~~--~CP~CR~~v~~~ 258 (273)
.-..|.||.+.+..| ..-+ |+|.||..|+..|++.+. .||.|+...+..
T Consensus 179 ~i~~C~iC~~iv~~g---~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 179 AVKICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp TCCBCTTTCSBCSSC---EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCCcCcchhhHHhCC---cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 356899999999977 3334 999999999999998754 899998865443
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=96.28 E-value=0.0031 Score=47.11 Aligned_cols=55 Identities=22% Similarity=0.510 Sum_probs=44.5
Q ss_pred CCccccccccccccCCeeEEeCC-CCccChhhHHHHHhcCCCcccccccccCCCCCCcccc
Q 024056 207 DELTCTVCLEQVNVGEIVRSLPC-LHQFHANCIDPWLRQQGTCPVCKLRAGSGWHETRQVE 266 (273)
Q Consensus 207 ~~~~C~ICle~~~~~~~v~~lpC-~H~FH~~CI~~WL~~~~~CP~CR~~v~~~~~~~~~~~ 266 (273)
--..|-.|+-..+ + ...| .|++|..|+.-.|+....||+|+..++.+-....+..
T Consensus 27 G~~nCKsCWf~~k-~----LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~~~~~PS 82 (99)
T 2ko5_A 27 GPQFCKSCWFENK-G----LVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLRPSAAPT 82 (99)
T ss_dssp CCCCCCSSCSCCS-S----EEECSSCEEEHHHHHHTCSSSSEETTTTEECCCCSCTTTSCC
T ss_pred CcccChhhccccC-C----eeeecchhhHHHHHHHHHhhccCCcccCCcCCcceecCcCCC
Confidence 3457999998866 2 3455 6999999999999999999999999998877666544
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.53 E-value=0.0078 Score=45.03 Aligned_cols=35 Identities=11% Similarity=0.465 Sum_probs=26.9
Q ss_pred CCccccccccccccCCeeEEeCCCCccChhhHHHH
Q 024056 207 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPW 241 (273)
Q Consensus 207 ~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~W 241 (273)
++..|.||.+.+..+-....+.|+|.||..|+..+
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 45689999987544333445889999999999983
No 75
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=94.41 E-value=0.03 Score=39.14 Aligned_cols=45 Identities=24% Similarity=0.506 Sum_probs=33.6
Q ss_pred CCccccccccccccCCeeEEeCCCCccChhhHHHHHhcCC----Cccccccc
Q 024056 207 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQG----TCPVCKLR 254 (273)
Q Consensus 207 ~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~----~CP~CR~~ 254 (273)
....|.||.+. ++.+..-.|...||..|+++.|.... .||.|+..
T Consensus 11 ~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 11 PGARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TTCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 45579999753 55554445999999999998887643 59999754
No 76
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=90.96 E-value=0.16 Score=37.08 Aligned_cols=35 Identities=20% Similarity=0.493 Sum_probs=23.7
Q ss_pred CCCccccccccccccCCeeEEeCCCCccChhhHHHH
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPW 241 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~W 241 (273)
..+..|.||- .+..++....--|+-+||..|+.+-
T Consensus 13 ~~D~~C~VC~-~~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCE-VWTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTC-CCCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCCcccCccc-cccccceeccccccccccHhhcccc
Confidence 4567899985 3344432222238999999999985
No 77
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=90.58 E-value=0.13 Score=35.04 Aligned_cols=45 Identities=31% Similarity=0.774 Sum_probs=32.2
Q ss_pred CCCccccccccccccCCeeEEeCCCCccChhhHHHHHhcC----CCcccccc
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQ----GTCPVCKL 253 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~----~~CP~CR~ 253 (273)
.++..|.+|... ++.+..-.|...||..|+.+-+... -.||.|+.
T Consensus 9 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 9 DHQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 456689999874 4444444599999999998755432 25999965
No 78
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=89.33 E-value=0.41 Score=35.49 Aligned_cols=46 Identities=26% Similarity=0.656 Sum_probs=29.0
Q ss_pred CCCccccccccccccCCeeEEeC--CC-CccChhhHHHHHhc----CCCcccccccc
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLP--CL-HQFHANCIDPWLRQ----QGTCPVCKLRA 255 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lp--C~-H~FH~~CI~~WL~~----~~~CP~CR~~v 255 (273)
.+...| ||..... ++.+..=. |. ..||..|+. |.. +-.||.|+..-
T Consensus 34 ~e~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 34 NEPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCCBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCCcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 344556 9988653 44443333 55 689999986 333 23599997643
No 79
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=88.55 E-value=0.17 Score=41.92 Aligned_cols=46 Identities=30% Similarity=0.616 Sum_probs=33.4
Q ss_pred CCccccccccccccCCeeEEeCCCCccChhhHHHHHhcCC----Ccccccccc
Q 024056 207 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQG----TCPVCKLRA 255 (273)
Q Consensus 207 ~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~----~CP~CR~~v 255 (273)
++..|.+|... |+.+..=.|...||..|+.+-+.... .||.|+..-
T Consensus 3 ~~~~C~~C~~~---g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG---GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC---SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCC---CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 45679999854 55554445999999999987665432 599998654
No 80
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=88.13 E-value=0.12 Score=35.48 Aligned_cols=49 Identities=24% Similarity=0.457 Sum_probs=33.0
Q ss_pred CCCccccccccccccCC-eeEEeCCCCccChhhHHHHHh-----cCCCccccccc
Q 024056 206 EDELTCTVCLEQVNVGE-IVRSLPCLHQFHANCIDPWLR-----QQGTCPVCKLR 254 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~-~v~~lpC~H~FH~~CI~~WL~-----~~~~CP~CR~~ 254 (273)
++...|+||...+..+. .+..-.|...||..|+.--.. ..-.||.|+..
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 35567999998886443 333334999999999853221 23469999653
No 81
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=87.98 E-value=0.13 Score=35.71 Aligned_cols=46 Identities=33% Similarity=0.733 Sum_probs=32.5
Q ss_pred CCCccccccccccccCCeeEEeCCCCccChhhHHHHHhcCC----Cccccccc
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQG----TCPVCKLR 254 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~----~CP~CR~~ 254 (273)
.++..|.||.+. ++.+..-.|...||..|+.+-+.... .||.|...
T Consensus 6 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 6 KNEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp SCCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 356689999864 45554445999999999986554322 49999653
No 82
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=87.92 E-value=0.3 Score=36.01 Aligned_cols=47 Identities=28% Similarity=0.690 Sum_probs=33.7
Q ss_pred CCCCccccccccccccCCeeEEeCCCCccChhhHHHHHhcCC----Cccccccc
Q 024056 205 TEDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQG----TCPVCKLR 254 (273)
Q Consensus 205 ~~~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~----~CP~CR~~ 254 (273)
+.++..|.+|... ++.+..-.|.-.||..|+.+=+..-. .||.|+..
T Consensus 22 d~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 22 DDSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 3566689999975 45444444889999999987665422 59999764
No 83
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=87.44 E-value=0.18 Score=37.75 Aligned_cols=46 Identities=20% Similarity=0.363 Sum_probs=31.5
Q ss_pred CCccccccccccccCCeeEEeCCCCccChhhHHHHHhc---CCCcccccc
Q 024056 207 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ---QGTCPVCKL 253 (273)
Q Consensus 207 ~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~---~~~CP~CR~ 253 (273)
+...| ||-.....+..+..=.|...||..|+..=+.. .-.||.|+.
T Consensus 27 d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 44567 89877666655555559999999998653222 236999964
No 84
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=87.35 E-value=0.11 Score=44.01 Aligned_cols=48 Identities=27% Similarity=0.547 Sum_probs=33.4
Q ss_pred CCCccccccccccccCCeeEEeCCCCccChhhHHHHHhcCC----Cccccccccc
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQG----TCPVCKLRAG 256 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~----~CP~CR~~v~ 256 (273)
.++..|.+|... |+.+..=.|...||..|+.+.+.... .||.|+..-.
T Consensus 5 ~~~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~ 56 (207)
T 3u5n_A 5 PNEDWCAVCQNG---GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGK 56 (207)
T ss_dssp SSCSSBTTTCCC---EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCCCCCCCCCC---CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCccc
Confidence 355679999854 44333334899999999988765432 5999986543
No 85
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=87.25 E-value=0.16 Score=34.72 Aligned_cols=47 Identities=30% Similarity=0.687 Sum_probs=32.2
Q ss_pred CCCccccccccccccCCeeEEeCCCCccChhhHHHHHhcCC----Ccccccccc
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQG----TCPVCKLRA 255 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~----~CP~CR~~v 255 (273)
.++..|.||.+. ++.+..-.|...||..|+.+-+.... .||.|+...
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 7 HHMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SSCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 356679999863 44444444889999999986554322 599997643
No 86
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=85.38 E-value=0.29 Score=31.86 Aligned_cols=44 Identities=27% Similarity=0.670 Sum_probs=29.9
Q ss_pred cccccccccccCCeeEEeCCCCccChhhHHHHHhcCC----Ccccccc
Q 024056 210 TCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQG----TCPVCKL 253 (273)
Q Consensus 210 ~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~----~CP~CR~ 253 (273)
.|.||...-..++.+..-.|...||..|+++=+.... .||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 4888887654444444445999999999976444322 4999964
No 87
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.15 E-value=0.11 Score=34.78 Aligned_cols=45 Identities=31% Similarity=0.758 Sum_probs=31.2
Q ss_pred CCCccccccccccccCCeeEEeCCCCccChhhHHHHHhcCC----Ccccccc
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQG----TCPVCKL 253 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~----~CP~CR~ 253 (273)
.++..|.+|... ++.+..-.|...||..|+.+-+.... .||.|+.
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 356679999874 45554445999999999986554322 4888853
No 88
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=84.82 E-value=0.27 Score=34.72 Aligned_cols=51 Identities=18% Similarity=0.362 Sum_probs=33.9
Q ss_pred CCCccccccccccccCCeeEEeCCCCccChhhHHHHHhc----CCCccccccccc
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ----QGTCPVCKLRAG 256 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~----~~~CP~CR~~v~ 256 (273)
.+...|.||.........+..=.|...||..|+..-... .-.||.|+..+.
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 345579999887543233333349999999998754432 235999987654
No 89
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=84.67 E-value=0.11 Score=35.17 Aligned_cols=47 Identities=30% Similarity=0.706 Sum_probs=33.1
Q ss_pred CCccccccccccccCCeeEEeCCCCccChhhHHHHHhcCC----Cccccccccc
Q 024056 207 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQG----TCPVCKLRAG 256 (273)
Q Consensus 207 ~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~----~CP~CR~~v~ 256 (273)
.+..|.+|... ++.+..-.|...||..|+.+-+.... .||.|+....
T Consensus 4 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 54 (60)
T 2puy_A 4 HEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQML 54 (60)
T ss_dssp CCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHH
T ss_pred CCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhh
Confidence 45679999874 55554445999999999986554322 4999966543
No 90
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.20 E-value=0.13 Score=38.10 Aligned_cols=50 Identities=26% Similarity=0.518 Sum_probs=34.5
Q ss_pred CCCccccccccccccCCeeEEeCCCCccChhhHHHHHhcCC----Ccccccccc
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQG----TCPVCKLRA 255 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~----~CP~CR~~v 255 (273)
.++..|.||...-..++.+..=.|...||..|+.+=|.... .||.|+...
T Consensus 14 ~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~~ 67 (92)
T 2e6r_A 14 IDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILAE 67 (92)
T ss_dssp CCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHHH
T ss_pred cCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCcc
Confidence 45668999998754444444444999999999975444322 499997643
No 91
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=83.14 E-value=0.55 Score=33.21 Aligned_cols=48 Identities=25% Similarity=0.591 Sum_probs=31.9
Q ss_pred CCccccccccccccCCeeEEeCCCCccChhhHHHH------H---hcCCCcccccccc
Q 024056 207 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPW------L---RQQGTCPVCKLRA 255 (273)
Q Consensus 207 ~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~W------L---~~~~~CP~CR~~v 255 (273)
+...| ||......+..+..-.|...||..|+.-- + ...-.||.|+..-
T Consensus 15 ~~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 15 NALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp TCCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CCCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 34456 89888764444444459999999998321 1 2466799997644
No 92
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=82.62 E-value=0.37 Score=36.60 Aligned_cols=47 Identities=23% Similarity=0.533 Sum_probs=32.0
Q ss_pred CCCccccccccccccCCeeEEeCCCCccChhhHHHHHhc----CCCccccc
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ----QGTCPVCK 252 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~----~~~CP~CR 252 (273)
.++..|.||.+.-...+.+.--.|+..||..|+...+.. .-.||.|+
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 356689999887433334555569999999999877542 22466654
No 93
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=82.42 E-value=0.3 Score=40.85 Aligned_cols=51 Identities=22% Similarity=0.460 Sum_probs=35.7
Q ss_pred ccccccccccccCC----eeEEeCCCCccChhhHHH------HHh-----cCCCcccccccccCCC
Q 024056 209 LTCTVCLEQVNVGE----IVRSLPCLHQFHANCIDP------WLR-----QQGTCPVCKLRAGSGW 259 (273)
Q Consensus 209 ~~C~ICle~~~~~~----~v~~lpC~H~FH~~CI~~------WL~-----~~~~CP~CR~~v~~~~ 259 (273)
..|+||...|..++ .+..-.|...||..|+.- -+. ..-.||.|+..-+..+
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~~~~ 68 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHPAEW 68 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSSCHH
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCCHHH
Confidence 36999999998776 333334999999999732 122 1568999988765544
No 94
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=81.03 E-value=4.7 Score=29.63 Aligned_cols=50 Identities=26% Similarity=0.553 Sum_probs=35.2
Q ss_pred CCcccccccccccc---CCeeEEe-CCCCccChhhHHHHHh-cCCCccccccccc
Q 024056 207 DELTCTVCLEQVNV---GEIVRSL-PCLHQFHANCIDPWLR-QQGTCPVCKLRAG 256 (273)
Q Consensus 207 ~~~~C~ICle~~~~---~~~v~~l-pC~H~FH~~CI~~WL~-~~~~CP~CR~~v~ 256 (273)
....|.||=+++-. ++....- -|+--.|..|.+-=.+ .+..||-|++++.
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 45689999999643 3322222 3787889999866444 4778999999885
No 95
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=80.82 E-value=1 Score=46.55 Aligned_cols=50 Identities=16% Similarity=0.141 Sum_probs=43.2
Q ss_pred CCCccccccccccccCCeeEEeCCC-CccChhhHHHHHhcCCCcccccccccCC
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLPCL-HQFHANCIDPWLRQQGTCPVCKLRAGSG 258 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lpC~-H~FH~~CI~~WL~~~~~CP~CR~~v~~~ 258 (273)
-+...|+|-++.+..+ ..+|.| +.|-..+|.+||..+.+||.=|.++...
T Consensus 889 P~~F~cPIs~~lM~DP---VilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~ 939 (968)
T 3m62_A 889 PDEFLDPLMYTIMKDP---VILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLE 939 (968)
T ss_dssp CGGGBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred cHHhCCcchhhHHhCC---eEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcc
Confidence 4677899999999976 678987 6899999999999999999988887643
No 96
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=80.75 E-value=0.96 Score=31.75 Aligned_cols=46 Identities=28% Similarity=0.697 Sum_probs=29.0
Q ss_pred CCccccccccccccCCeeEEeC--CC-CccChhhHHHHHhcC----CCccccccccc
Q 024056 207 DELTCTVCLEQVNVGEIVRSLP--CL-HQFHANCIDPWLRQQ----GTCPVCKLRAG 256 (273)
Q Consensus 207 ~~~~C~ICle~~~~~~~v~~lp--C~-H~FH~~CI~~WL~~~----~~CP~CR~~v~ 256 (273)
+...| ||..... ++.+..=. |. ..||..|+. |... -.||.|+..-.
T Consensus 15 ~~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~~ 67 (71)
T 1wen_A 15 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 67 (71)
T ss_dssp SCCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCSS
T ss_pred CCCEE-ECCCCCC-CCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcccc
Confidence 44567 8987643 44443333 65 699999987 4332 25999976443
No 97
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=78.51 E-value=0.57 Score=34.36 Aligned_cols=53 Identities=19% Similarity=0.385 Sum_probs=33.1
Q ss_pred CCCcccccccccc--ccCCeeEEeCCCCccChhhHHHHHhc--CCCcccccccccCC
Q 024056 206 EDELTCTVCLEQV--NVGEIVRSLPCLHQFHANCIDPWLRQ--QGTCPVCKLRAGSG 258 (273)
Q Consensus 206 ~~~~~C~ICle~~--~~~~~v~~lpC~H~FH~~CI~~WL~~--~~~CP~CR~~v~~~ 258 (273)
+++..|.||...- ..++.+..-.|.-.||..|+..-+.- .=.||.|.......
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~~ 79 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRARP 79 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTSC
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccchh
Confidence 4567899999764 22223333348899999998753211 22599997654433
No 98
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=76.28 E-value=4.3 Score=29.34 Aligned_cols=39 Identities=23% Similarity=0.462 Sum_probs=30.0
Q ss_pred CCCccccccccccccCCeeEEeC-CCCccChhhHHHHHhc
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLP-CLHQFHANCIDPWLRQ 244 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lp-C~H~FH~~CI~~WL~~ 244 (273)
.....|.+|.+.++...-|..-. =.|.||..|-...+++
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 35678999999998664443322 4799999999999876
No 99
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=75.86 E-value=3.1 Score=31.51 Aligned_cols=33 Identities=21% Similarity=0.514 Sum_probs=23.7
Q ss_pred CCcccccccccc------ccCCeeEEeCCCCccChhhHH
Q 024056 207 DELTCTVCLEQV------NVGEIVRSLPCLHQFHANCID 239 (273)
Q Consensus 207 ~~~~C~ICle~~------~~~~~v~~lpC~H~FH~~CI~ 239 (273)
....|.+|+..- ..++.+..-.|+..||..|+.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 345799998763 223455555699999999995
No 100
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=75.19 E-value=0.5 Score=32.35 Aligned_cols=50 Identities=24% Similarity=0.541 Sum_probs=33.3
Q ss_pred CCcccccccccccc--CCeeEEeCCCCccChhhHHHHHh-------cCCCccccccccc
Q 024056 207 DELTCTVCLEQVNV--GEIVRSLPCLHQFHANCIDPWLR-------QQGTCPVCKLRAG 256 (273)
Q Consensus 207 ~~~~C~ICle~~~~--~~~v~~lpC~H~FH~~CI~~WL~-------~~~~CP~CR~~v~ 256 (273)
++..|.||...... ++.+..-.|...||..|+.+-+. ..=.||.|+....
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~ 63 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATT 63 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTS
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCccc
Confidence 56689999987543 33444444999999999876432 1235999976443
No 101
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=73.37 E-value=3.3 Score=33.06 Aligned_cols=46 Identities=26% Similarity=0.491 Sum_probs=32.9
Q ss_pred CCCCccccccccccccCCeeEEeCCCCccChhhHHHHHh---------c--CCCcccccc
Q 024056 205 TEDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLR---------Q--QGTCPVCKL 253 (273)
Q Consensus 205 ~~~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~---------~--~~~CP~CR~ 253 (273)
+..+..|.+|-+. |+.+..=.|-..||..||.+=+. . .=.||.|+.
T Consensus 60 Dg~~d~C~vC~~G---G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 60 DGMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TSCBCSCSSSCCC---SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCeecccCCC---CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 3456789999986 55554445999999999997552 1 225999974
No 102
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=72.23 E-value=2.6 Score=32.04 Aligned_cols=48 Identities=29% Similarity=0.512 Sum_probs=31.1
Q ss_pred CCCccccccccccccCCeeEEe--CCCCccChhhHHHHHhcCC----CcccccccccCC
Q 024056 206 EDELTCTVCLEQVNVGEIVRSL--PCLHQFHANCIDPWLRQQG----TCPVCKLRAGSG 258 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~l--pC~H~FH~~CI~~WL~~~~----~CP~CR~~v~~~ 258 (273)
.++..|.+|.+ .++.+..= .|-..||..|+. |.... .||.|+-.+..+
T Consensus 13 ~~~~~C~~C~~---~G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~k 66 (107)
T 4gne_A 13 MHEDYCFQCGD---GGELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECSS 66 (107)
T ss_dssp SSCSSCTTTCC---CSEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTCS
T ss_pred CCCCCCCcCCC---CCcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCCC
Confidence 45667999984 35444333 488899999997 54322 488776555443
No 103
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=72.15 E-value=4 Score=28.85 Aligned_cols=48 Identities=23% Similarity=0.445 Sum_probs=30.9
Q ss_pred CCcccccccccccc-CCeeEEeCCCCccChhhHHHHH---h--cCCCcccccccc
Q 024056 207 DELTCTVCLEQVNV-GEIVRSLPCLHQFHANCIDPWL---R--QQGTCPVCKLRA 255 (273)
Q Consensus 207 ~~~~C~ICle~~~~-~~~v~~lpC~H~FH~~CI~~WL---~--~~~~CP~CR~~v 255 (273)
+...| ||...+.. +..+..-.|...||..|+.--- . ..-.||.|+..-
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 34456 99888753 3344444599999999984211 1 244699998654
No 104
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=71.09 E-value=4.1 Score=26.45 Aligned_cols=43 Identities=19% Similarity=0.298 Sum_probs=28.0
Q ss_pred cccccccccccCCe-eEEe-CCCCccChhhHHHH----HhcCCCccccc
Q 024056 210 TCTVCLEQVNVGEI-VRSL-PCLHQFHANCIDPW----LRQQGTCPVCK 252 (273)
Q Consensus 210 ~C~ICle~~~~~~~-v~~l-pC~H~FH~~CI~~W----L~~~~~CP~CR 252 (273)
.|.+|...+..++. +..- .|...||..|+.-- ...+-.||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 57899888764433 3333 58899999997421 13456799885
No 105
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=70.74 E-value=0.78 Score=38.31 Aligned_cols=44 Identities=30% Similarity=0.697 Sum_probs=31.1
Q ss_pred ccccccccccccCCeeEEeCCCCccChhhHHHHHhcC----CCcccccccc
Q 024056 209 LTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQ----GTCPVCKLRA 255 (273)
Q Consensus 209 ~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~----~~CP~CR~~v 255 (273)
..|.+|.+. ++.+..-.|...||..|+.+=+... -.||.|+..-
T Consensus 3 ~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 3 TICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCBTTTCCC---SSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CcCccCCCC---CceeECCCCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 469999855 5554444588999999997655432 2599997653
No 106
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=69.89 E-value=1.2 Score=33.92 Aligned_cols=47 Identities=28% Similarity=0.634 Sum_probs=30.8
Q ss_pred CCccccccccccc-cCCeeEEeCCCCccChhhHHHHHhcCC----Ccccccc
Q 024056 207 DELTCTVCLEQVN-VGEIVRSLPCLHQFHANCIDPWLRQQG----TCPVCKL 253 (273)
Q Consensus 207 ~~~~C~ICle~~~-~~~~v~~lpC~H~FH~~CI~~WL~~~~----~CP~CR~ 253 (273)
+-..|.||.+.-. .++.+..-.|...||..|+++-|.... .||.|+.
T Consensus 60 ~C~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 60 ECKTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp TTCCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred cCCccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 3446889987532 233333334999999999977555422 5999974
No 107
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=69.72 E-value=3.3 Score=28.68 Aligned_cols=32 Identities=22% Similarity=0.440 Sum_probs=25.3
Q ss_pred CCCccccccccccccCCeeEEeCC-CCccChhhHHHH
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLPC-LHQFHANCIDPW 241 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lpC-~H~FH~~CI~~W 241 (273)
++..-|.||.++ -.++.+.| +-.||..|..+-
T Consensus 6 ee~pWC~ICneD----AtlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 6 SGLPWCCICNED----ATLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp CCCSSCTTTCSC----CCEEETTTTSEEECSSHHHHH
T ss_pred cCCCeeEEeCCC----CeEEecCCCCceehHHHHHHH
Confidence 455679999998 34677889 889999997664
No 108
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=68.46 E-value=3.5 Score=28.33 Aligned_cols=33 Identities=24% Similarity=0.533 Sum_probs=23.3
Q ss_pred CCCccccccccccccCCee-EEe-CCCCccChhhH
Q 024056 206 EDELTCTVCLEQVNVGEIV-RSL-PCLHQFHANCI 238 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v-~~l-pC~H~FH~~CI 238 (273)
++...|.+|...+..++.. ..- .|.-.||..|+
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cv 40 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICT 40 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHH
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhcc
Confidence 3556799999998755433 334 69999999997
No 109
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=67.06 E-value=1.3 Score=36.10 Aligned_cols=47 Identities=19% Similarity=0.555 Sum_probs=31.0
Q ss_pred CCccccccccccccCC-eeEEeCCCCccChhhHHHHH-----hcCCCccccccc
Q 024056 207 DELTCTVCLEQVNVGE-IVRSLPCLHQFHANCIDPWL-----RQQGTCPVCKLR 254 (273)
Q Consensus 207 ~~~~C~ICle~~~~~~-~v~~lpC~H~FH~~CI~~WL-----~~~~~CP~CR~~ 254 (273)
+...| +|......+. .+..-.|...||..|+.--- ...-.||.|+..
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 45578 9998765333 34334499999999984211 124469999764
No 110
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=66.69 E-value=4.1 Score=29.07 Aligned_cols=34 Identities=18% Similarity=0.462 Sum_probs=24.5
Q ss_pred CCccccccccccccCCe-eEEeCCCCccChhhHHH
Q 024056 207 DELTCTVCLEQVNVGEI-VRSLPCLHQFHANCIDP 240 (273)
Q Consensus 207 ~~~~C~ICle~~~~~~~-v~~lpC~H~FH~~CI~~ 240 (273)
+...|.+|...|..-.. ...-.||.+||..|...
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 44579999999974432 22344999999999754
No 111
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=66.68 E-value=5.2 Score=28.56 Aligned_cols=41 Identities=17% Similarity=0.348 Sum_probs=29.3
Q ss_pred CCccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCcccccccccCC
Q 024056 207 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSG 258 (273)
Q Consensus 207 ~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v~~~ 258 (273)
....|..|-..+. ++.+ ..-+..||.+| ..|-.|+..+...
T Consensus 24 ~~~~C~~C~~~I~-~~~v--~a~~~~~H~~C--------F~C~~C~~~L~~~ 64 (90)
T 2dar_A 24 RTPMCAHCNQVIR-GPFL--VALGKSWHPEE--------FNCAHCKNTMAYI 64 (90)
T ss_dssp CCCBBSSSCCBCC-SCEE--EETTEEECTTT--------CBCSSSCCBCSSS
T ss_pred CCCCCccCCCEec-ceEE--EECCccccccC--------CccCCCCCCCCCC
Confidence 3457999999885 4433 23578899887 4688898887643
No 112
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=65.98 E-value=3.8 Score=31.78 Aligned_cols=34 Identities=21% Similarity=0.369 Sum_probs=24.1
Q ss_pred CCccccccccccccCCe-eEEeCCCCccChhhHHH
Q 024056 207 DELTCTVCLEQVNVGEI-VRSLPCLHQFHANCIDP 240 (273)
Q Consensus 207 ~~~~C~ICle~~~~~~~-v~~lpC~H~FH~~CI~~ 240 (273)
+...|.+|...|..-.. ...-.||++||..|...
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 34579999999874332 22345999999999544
No 113
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=65.94 E-value=6.2 Score=28.25 Aligned_cols=36 Identities=17% Similarity=0.207 Sum_probs=25.7
Q ss_pred CCCccccccccccccCCe-eEEeCCCCccChhhHHHH
Q 024056 206 EDELTCTVCLEQVNVGEI-VRSLPCLHQFHANCIDPW 241 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~-v~~lpC~H~FH~~CI~~W 241 (273)
.+...|.+|...|..-.. ...-.||++||..|....
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 455689999999975432 223459999999996553
No 114
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.25 E-value=4.9 Score=28.79 Aligned_cols=35 Identities=20% Similarity=0.304 Sum_probs=24.5
Q ss_pred CCCccccccccccccCC-eeEEeCCCCccChhhHHH
Q 024056 206 EDELTCTVCLEQVNVGE-IVRSLPCLHQFHANCIDP 240 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~-~v~~lpC~H~FH~~CI~~ 240 (273)
++...|.+|...|..-. ....-.||.+||..|...
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 34557999999986432 222345999999999543
No 115
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=64.89 E-value=4.4 Score=29.52 Aligned_cols=50 Identities=16% Similarity=0.358 Sum_probs=32.0
Q ss_pred CCccccccccccccCCe-eEEeCCCCccChhhHHHHHh------cCCCccccccccc
Q 024056 207 DELTCTVCLEQVNVGEI-VRSLPCLHQFHANCIDPWLR------QQGTCPVCKLRAG 256 (273)
Q Consensus 207 ~~~~C~ICle~~~~~~~-v~~lpC~H~FH~~CI~~WL~------~~~~CP~CR~~v~ 256 (273)
+...|.+|...|..-.. ...-.||++||..|...+.. ....|-.|-..+.
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~ 75 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETIS 75 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHHH
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHHH
Confidence 44579999999874332 23345999999999765431 1234666655443
No 116
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=64.69 E-value=1.1 Score=34.86 Aligned_cols=49 Identities=18% Similarity=0.327 Sum_probs=31.2
Q ss_pred CCccccccccccccCC-eeEEeCCCCccChhhHHHHHhcCCCcccccccc
Q 024056 207 DELTCTVCLEQVNVGE-IVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRA 255 (273)
Q Consensus 207 ~~~~C~ICle~~~~~~-~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v 255 (273)
+...|..|-..|..-. ....-.||.+||..|..........|-.|-..+
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~~ 67 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRFR 67 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHHH
Confidence 4457999999986432 223345999999999776655566788885543
No 117
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=63.69 E-value=1.4 Score=30.62 Aligned_cols=47 Identities=17% Similarity=0.431 Sum_probs=29.7
Q ss_pred CCCccccccccccccCCeeEEeCCCCccChhhHHHHHh---cCCCcccccc
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLR---QQGTCPVCKL 253 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~---~~~~CP~CR~ 253 (273)
.+...| ||......+..+..-.|...||..|+.---. ..-.||.|+.
T Consensus 17 ~~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 345567 9988766333444445999999999853211 2336888864
No 118
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=62.59 E-value=1.2 Score=31.85 Aligned_cols=44 Identities=27% Similarity=0.597 Sum_probs=28.4
Q ss_pred cccccccccccCCeeEEeCCCCccChhhHHHHHhcC-----CCcccccc
Q 024056 210 TCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQ-----GTCPVCKL 253 (273)
Q Consensus 210 ~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~-----~~CP~CR~ 253 (273)
.|.||...-..++.+..=.|...||..|+.+-|... =.||.|+.
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 577777664444333333489999999998765442 25888865
No 119
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=62.25 E-value=2 Score=37.00 Aligned_cols=46 Identities=26% Similarity=0.547 Sum_probs=28.0
Q ss_pred CccccccccccccCCeeEEeCCCCccChhhHHHHHhcC-----CCcccccc
Q 024056 208 ELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQ-----GTCPVCKL 253 (273)
Q Consensus 208 ~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~-----~~CP~CR~ 253 (273)
+..|.+|...-..++.+..=.|...||..|+++=|... =.||.|+.
T Consensus 174 ~c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 174 VCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TTSCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 33689998754444444444499999999998655431 25999965
No 120
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=61.88 E-value=1.8 Score=30.87 Aligned_cols=44 Identities=27% Similarity=0.578 Sum_probs=29.8
Q ss_pred cccccccccccCCeeEEeCCCCccChhhHHHHHhc-----CCCcccccc
Q 024056 210 TCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ-----QGTCPVCKL 253 (273)
Q Consensus 210 ~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~-----~~~CP~CR~ 253 (273)
.|.||...-..++.+..=.|...||..|+++=|.. .=.||.|+.
T Consensus 28 ~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 78999875444544444459999999999864433 124888864
No 121
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=61.25 E-value=1.6 Score=29.53 Aligned_cols=43 Identities=28% Similarity=0.683 Sum_probs=26.4
Q ss_pred CCccccccccccccCCeeEEeC--CC-CccChhhHHHHHhcC----CCcccccc
Q 024056 207 DELTCTVCLEQVNVGEIVRSLP--CL-HQFHANCIDPWLRQQ----GTCPVCKL 253 (273)
Q Consensus 207 ~~~~C~ICle~~~~~~~v~~lp--C~-H~FH~~CI~~WL~~~----~~CP~CR~ 253 (273)
+...| ||..... ++.+..=. |. ..||..|+. |... -.||.|+.
T Consensus 9 e~~~C-~C~~~~~-g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcCC-CCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 34456 8987643 44333333 55 689999987 4432 25998864
No 122
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=59.94 E-value=7.4 Score=27.03 Aligned_cols=31 Identities=13% Similarity=0.265 Sum_probs=22.5
Q ss_pred ccccccccccccCCe-eEEeCCCCccChhhHH
Q 024056 209 LTCTVCLEQVNVGEI-VRSLPCLHQFHANCID 239 (273)
Q Consensus 209 ~~C~ICle~~~~~~~-v~~lpC~H~FH~~CI~ 239 (273)
..|.+|...|..-.. ...-.||.+||..|..
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 479999999874322 2234499999999964
No 123
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=59.80 E-value=0.95 Score=33.08 Aligned_cols=51 Identities=22% Similarity=0.531 Sum_probs=34.1
Q ss_pred CCcccccccccccc--CCeeEEeCCCCccChhhHHHHHhc--------CCCcccccccccC
Q 024056 207 DELTCTVCLEQVNV--GEIVRSLPCLHQFHANCIDPWLRQ--------QGTCPVCKLRAGS 257 (273)
Q Consensus 207 ~~~~C~ICle~~~~--~~~v~~lpC~H~FH~~CI~~WL~~--------~~~CP~CR~~v~~ 257 (273)
++..|.||...-.. ++.+..=.|...||..|+.+-|.. .=.|+.|+.....
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~ 75 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKR 75 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCC
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhh
Confidence 45689999987442 233333339999999999875531 2259999775543
No 124
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=59.22 E-value=0.82 Score=34.98 Aligned_cols=49 Identities=18% Similarity=0.462 Sum_probs=33.2
Q ss_pred ccccccccccccCCeeEEeCCCCccChhhHHHHHhcCC----CcccccccccC
Q 024056 209 LTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQG----TCPVCKLRAGS 257 (273)
Q Consensus 209 ~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~----~CP~CR~~v~~ 257 (273)
..|.||...-..++.+..-.|...||..|+.+=|.... .||.|+.....
T Consensus 59 ~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~~ 111 (114)
T 2kwj_A 59 KSCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLKE 111 (114)
T ss_dssp CCCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHHHH
T ss_pred CccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccchhhc
Confidence 36888887655555554445999999999986444322 49988765543
No 125
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=59.20 E-value=8.6 Score=30.12 Aligned_cols=45 Identities=27% Similarity=0.482 Sum_probs=30.5
Q ss_pred CCCccccccccccccCCeeEEeCCCCccChhhHHHH-----H-hc-----CCCcccccc
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPW-----L-RQ-----QGTCPVCKL 253 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~W-----L-~~-----~~~CP~CR~ 253 (273)
..+..|.||-+. ++.+..=.|-..||..||.+= + +. .=.|+.|+-
T Consensus 55 g~~~~C~vC~dG---G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 55 GMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp SCBSSCTTTCCC---SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCcCeecCCC---CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 345679999976 444333348999999999974 2 21 126999954
No 126
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=59.03 E-value=3.2 Score=28.09 Aligned_cols=41 Identities=22% Similarity=0.434 Sum_probs=27.7
Q ss_pred cccccccccccCCeeEEeC-CCCccChhhHHHHHhcCCCcccc
Q 024056 210 TCTVCLEQVNVGEIVRSLP-CLHQFHANCIDPWLRQQGTCPVC 251 (273)
Q Consensus 210 ~C~ICle~~~~~~~v~~lp-C~H~FH~~CI~~WL~~~~~CP~C 251 (273)
.|-.|+..+.... ...-+ |++.||.+|=.---.+-..||-|
T Consensus 17 ~C~~C~~~~~~~~-~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 17 FCYGCQGELKDQH-VYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp EETTTTEECTTSE-EECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred cccccCcccCCCc-cEECCccCcCcccchhHHHHhhccCCcCC
Confidence 5999999986432 23344 99999999932222344579988
No 127
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=58.97 E-value=8.1 Score=35.63 Aligned_cols=47 Identities=23% Similarity=0.470 Sum_probs=31.0
Q ss_pred CCccccccccccccCCeeEEeCCCCccChhhHHHHHh---c--CCCccccccccc
Q 024056 207 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLR---Q--QGTCPVCKLRAG 256 (273)
Q Consensus 207 ~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~---~--~~~CP~CR~~v~ 256 (273)
-...|++-...+. ..++...|.|.-|.+- ..||. + .-.||+|...+.
T Consensus 248 vSL~CPlS~~ri~--~PvRg~~C~HlQCFDl-~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 248 MSLQCPISYTRMK--YPSKSINCKHLQCFDA-LWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp EESBCTTTSSBCS--SEEEETTCCSSCCEEH-HHHHHHHHHSCCCBCTTTCCBCC
T ss_pred EeecCCCcccccc--ccCcCCcCCCcceECH-HHHHHHhhcCCceeCCCCCcccC
Confidence 3568998888877 4467777999855443 23443 2 236999988763
No 128
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=58.59 E-value=1.9 Score=29.06 Aligned_cols=43 Identities=30% Similarity=0.703 Sum_probs=27.1
Q ss_pred CCccccccccccccCCeeEEeC--CC-CccChhhHHHHHhcC----CCcccccc
Q 024056 207 DELTCTVCLEQVNVGEIVRSLP--CL-HQFHANCIDPWLRQQ----GTCPVCKL 253 (273)
Q Consensus 207 ~~~~C~ICle~~~~~~~v~~lp--C~-H~FH~~CI~~WL~~~----~~CP~CR~ 253 (273)
+..-| ||..... ++.+..=. |. ..||..|+. |... -.||.|+.
T Consensus 8 e~~yC-~C~~~~~-g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVSY-GEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCCC-CCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 34456 9987643 54444334 66 699999987 4332 25998864
No 129
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=58.31 E-value=6.8 Score=29.66 Aligned_cols=32 Identities=28% Similarity=0.509 Sum_probs=22.9
Q ss_pred cccccccccc-------cCCeeEEeCCCCccChhhHHHH
Q 024056 210 TCTVCLEQVN-------VGEIVRSLPCLHQFHANCIDPW 241 (273)
Q Consensus 210 ~C~ICle~~~-------~~~~v~~lpC~H~FH~~CI~~W 241 (273)
.|.+|+..-. .++.+..-.|+..||..|+..+
T Consensus 3 ~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 3 YCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred cCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 5999987642 1244555569999999999754
No 130
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=57.20 E-value=2 Score=29.92 Aligned_cols=44 Identities=27% Similarity=0.621 Sum_probs=28.3
Q ss_pred cccccccccccCCeeEEeCCCCccChhhHHHHHhc-----CCCcccccc
Q 024056 210 TCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ-----QGTCPVCKL 253 (273)
Q Consensus 210 ~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~-----~~~CP~CR~ 253 (273)
.|.||...-..++.+.-=.|...||..|+++=|.. .=.||.|+.
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 56788765444444433348999999999864443 225888864
No 131
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=57.17 E-value=5.4 Score=33.68 Aligned_cols=33 Identities=15% Similarity=0.332 Sum_probs=23.7
Q ss_pred CccccccccccccCCe-eEEeCCCCccChhhHHH
Q 024056 208 ELTCTVCLEQVNVGEI-VRSLPCLHQFHANCIDP 240 (273)
Q Consensus 208 ~~~C~ICle~~~~~~~-v~~lpC~H~FH~~CI~~ 240 (273)
+..|.+|...|.--.. ...-.||++||..|...
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 3589999999874332 23345999999999654
No 132
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=56.90 E-value=8.8 Score=35.23 Aligned_cols=46 Identities=24% Similarity=0.561 Sum_probs=30.4
Q ss_pred CccccccccccccCCeeEEeCCCCccChhhHHHHHh---cC--CCccccccccc
Q 024056 208 ELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLR---QQ--GTCPVCKLRAG 256 (273)
Q Consensus 208 ~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~---~~--~~CP~CR~~v~ 256 (273)
...|+|=...+.. .++...|.|.-|.+- ..||. +. -.||+|.+.+.
T Consensus 215 SL~CPlS~~ri~~--P~Rg~~C~HlqCFDl-~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 215 SLMCPLGKMRLTI--PCRAVTCTHLQCFDA-ALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp ESBCTTTCSBCSS--EEEETTCCCCCCEEH-HHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eeeCCCccceecc--CCcCCCCCCCccCCH-HHHHHHHhhCCCeECCCCCcccC
Confidence 5679988888774 466677999744432 23332 33 36999988764
No 133
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=56.68 E-value=5.6 Score=33.87 Aligned_cols=34 Identities=21% Similarity=0.376 Sum_probs=24.5
Q ss_pred CccccccccccccCCe-eEEeCCCCccChhhHHHH
Q 024056 208 ELTCTVCLEQVNVGEI-VRSLPCLHQFHANCIDPW 241 (273)
Q Consensus 208 ~~~C~ICle~~~~~~~-v~~lpC~H~FH~~CI~~W 241 (273)
+..|.+|...|..-.. ...-.||++||..|-...
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 4579999999875432 233459999999996543
No 134
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=56.62 E-value=7.4 Score=28.21 Aligned_cols=51 Identities=20% Similarity=0.296 Sum_probs=33.2
Q ss_pred CCccccccccccccCCe-eEEeCCCCccChhhHHHHH-------hcCCCcccccccccC
Q 024056 207 DELTCTVCLEQVNVGEI-VRSLPCLHQFHANCIDPWL-------RQQGTCPVCKLRAGS 257 (273)
Q Consensus 207 ~~~~C~ICle~~~~~~~-v~~lpC~H~FH~~CI~~WL-------~~~~~CP~CR~~v~~ 257 (273)
+...|.+|...|..-.. ...-.||.+||..|....+ +....|-.|-..+..
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~~ 66 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILTR 66 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHHH
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHHh
Confidence 44579999999875432 2234599999999975532 112358888665543
No 135
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=54.02 E-value=11 Score=26.24 Aligned_cols=48 Identities=21% Similarity=0.440 Sum_probs=30.8
Q ss_pred CCCcccccccccc--ccCCeeEEeCCCCccChhhHHHHHhc--CCCcccccc
Q 024056 206 EDELTCTVCLEQV--NVGEIVRSLPCLHQFHANCIDPWLRQ--QGTCPVCKL 253 (273)
Q Consensus 206 ~~~~~C~ICle~~--~~~~~v~~lpC~H~FH~~CI~~WL~~--~~~CP~CR~ 253 (273)
.++..|.||.+.- ..++.+..=.|.-.||..|+..-..- .=.||.|+.
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 4567899998764 23333333349999999998753211 225888865
No 136
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=53.33 E-value=5.1 Score=30.00 Aligned_cols=12 Identities=42% Similarity=1.204 Sum_probs=10.7
Q ss_pred cChhhHHHHHhc
Q 024056 233 FHANCIDPWLRQ 244 (273)
Q Consensus 233 FH~~CI~~WL~~ 244 (273)
||..|+.+|++-
T Consensus 43 FCRNCLskWy~~ 54 (105)
T 2o35_A 43 FCRNCLSNWYRE 54 (105)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999863
No 137
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=53.17 E-value=5.2 Score=29.92 Aligned_cols=11 Identities=45% Similarity=1.174 Sum_probs=10.4
Q ss_pred cChhhHHHHHh
Q 024056 233 FHANCIDPWLR 243 (273)
Q Consensus 233 FH~~CI~~WL~ 243 (273)
||..|+.+|+.
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999986
No 138
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=51.58 E-value=8.4 Score=28.86 Aligned_cols=49 Identities=22% Similarity=0.458 Sum_probs=32.1
Q ss_pred CccccccccccccCC-eeEEe-CCCCccChhhHHHH------Hh----cCCCccccccccc
Q 024056 208 ELTCTVCLEQVNVGE-IVRSL-PCLHQFHANCIDPW------LR----QQGTCPVCKLRAG 256 (273)
Q Consensus 208 ~~~C~ICle~~~~~~-~v~~l-pC~H~FH~~CI~~W------L~----~~~~CP~CR~~v~ 256 (273)
...|.||...+...+ .+..= .|...||..|+.-= +. .+-.||.|+..-.
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~ 63 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKE 63 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCC
Confidence 346999999986543 33333 48999999997311 10 2346999976543
No 139
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=49.11 E-value=9.7 Score=26.01 Aligned_cols=42 Identities=12% Similarity=0.092 Sum_probs=20.5
Q ss_pred CCccccccccccccCCeeEEeCCCCccCh-hhHHHHHhcCCCccccc
Q 024056 207 DELTCTVCLEQVNVGEIVRSLPCLHQFHA-NCIDPWLRQQGTCPVCK 252 (273)
Q Consensus 207 ~~~~C~ICle~~~~~~~v~~lpC~H~FH~-~CI~~WL~~~~~CP~CR 252 (273)
+-..|..|...+..+. ....=+..||. .|..+ .....|-.|.
T Consensus 26 ~CF~C~~C~~~L~~~~--~~~~~g~~yC~~~cy~~--~f~~~C~~C~ 68 (76)
T 1iml_A 26 PCLKCEKCGKTLTSGG--HAEHEGKPYCNHPCYSA--MFGPKGFGRG 68 (76)
T ss_dssp TTCBCTTTCCBCCTTT--EEEETTEEEETTTHHHH--HSSCCCSSCC
T ss_pred CCCCccccCccCCCCc--eECcCCeEeeCHHHHHH--HhCccCCCcC
Confidence 4456666666655432 11223455666 46533 2344565553
No 140
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=47.30 E-value=4 Score=37.66 Aligned_cols=49 Identities=14% Similarity=0.189 Sum_probs=0.0
Q ss_pred CCccccccccccccCC-eeEEeCCCCccChhhHHHHHhc-------CCCcccccccc
Q 024056 207 DELTCTVCLEQVNVGE-IVRSLPCLHQFHANCIDPWLRQ-------QGTCPVCKLRA 255 (273)
Q Consensus 207 ~~~~C~ICle~~~~~~-~v~~lpC~H~FH~~CI~~WL~~-------~~~CP~CR~~v 255 (273)
+...|.+|...|..-. ....-.||++||..|-..++.- ...|-.|-..+
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp ---------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 4567999999886432 1233459999999998776421 23577775544
No 141
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=46.69 E-value=18 Score=25.39 Aligned_cols=47 Identities=19% Similarity=0.447 Sum_probs=31.2
Q ss_pred CCccccccccccccCCeeEEe--CCCCccChhhHHHHH---------hcCCCccccccc
Q 024056 207 DELTCTVCLEQVNVGEIVRSL--PCLHQFHANCIDPWL---------RQQGTCPVCKLR 254 (273)
Q Consensus 207 ~~~~C~ICle~~~~~~~v~~l--pC~H~FH~~CI~~WL---------~~~~~CP~CR~~ 254 (273)
+...| ||-.....+..+..= .|...||..|+.--- ..+-.||.|+..
T Consensus 15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 44567 898875555555555 699999999984211 124469999764
No 142
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=45.63 E-value=4 Score=27.69 Aligned_cols=43 Identities=28% Similarity=0.675 Sum_probs=26.5
Q ss_pred CCccccccccccccCCeeEEeC--CC-CccChhhHHHHHhc----CCCcccccc
Q 024056 207 DELTCTVCLEQVNVGEIVRSLP--CL-HQFHANCIDPWLRQ----QGTCPVCKL 253 (273)
Q Consensus 207 ~~~~C~ICle~~~~~~~v~~lp--C~-H~FH~~CI~~WL~~----~~~CP~CR~ 253 (273)
+..-| ||..... ++.+..=. |. ..||..|+. |.. +-.||.|+.
T Consensus 10 e~~yC-~C~~~~~-g~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 10 EPTYC-LCNQVSY-GEMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CCEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CCcEE-ECCCCCC-CCeeeeeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence 34456 9988633 44433333 55 899999986 332 235999964
No 143
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=44.99 E-value=4 Score=30.63 Aligned_cols=45 Identities=18% Similarity=0.558 Sum_probs=29.4
Q ss_pred ccccccccccccCCeeEEeCCCCccChhhHHHHHhcC----CCcccccc
Q 024056 209 LTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQ----GTCPVCKL 253 (273)
Q Consensus 209 ~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~----~~CP~CR~ 253 (273)
..|.+|...-.....+..-.|...||..|+.+=+... -.||.|+.
T Consensus 55 ~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~ 103 (111)
T 2ysm_A 55 KVCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRI 103 (111)
T ss_dssp CCCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHC
T ss_pred CcccccCccCCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcC
Confidence 3577887764433344344499999999998654432 25888855
No 144
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.14 E-value=17 Score=24.76 Aligned_cols=41 Identities=24% Similarity=0.458 Sum_probs=30.0
Q ss_pred CccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCcccccccccCC
Q 024056 208 ELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSG 258 (273)
Q Consensus 208 ~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v~~~ 258 (273)
...|..|-+.+..++.+. .-+..||.+| .+|..|+..+...
T Consensus 9 ~~~C~~C~~~I~~~~~v~--a~~~~~H~~C--------F~C~~C~~~L~~~ 49 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVS--SLGKDWHKFC--------LKCERCSKTLTPG 49 (76)
T ss_dssp CCBCTTTCCBCCTTTEEE--ETTEEEETTT--------CBCSSSCCBCCTT
T ss_pred CCCCcCCCCEeECCeEEE--ECCeEeeCCC--------CCCCCCCCccCCC
Confidence 347999999988666543 3477888877 4688898887643
No 145
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=43.82 E-value=11 Score=29.62 Aligned_cols=33 Identities=24% Similarity=0.436 Sum_probs=23.3
Q ss_pred CCccccccccccc-cCC-eeEEeCCCCccChhhHH
Q 024056 207 DELTCTVCLEQVN-VGE-IVRSLPCLHQFHANCID 239 (273)
Q Consensus 207 ~~~~C~ICle~~~-~~~-~v~~lpC~H~FH~~CI~ 239 (273)
.+..|.+|...|. ... ......|.|.+|..|-.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 3457999999993 322 33445599999999954
No 146
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=41.28 E-value=40 Score=23.60 Aligned_cols=41 Identities=17% Similarity=0.273 Sum_probs=29.2
Q ss_pred CCccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCcccccccccCC
Q 024056 207 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSG 258 (273)
Q Consensus 207 ~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v~~~ 258 (273)
....|..|-+.+.. +. ..--+..||.+| ..|-.|+..+...
T Consensus 24 ~~~~C~~C~~~I~~-~~--~~a~~~~~H~~C--------F~C~~C~~~L~~~ 64 (89)
T 1x64_A 24 RMPLCDKCGSGIVG-AV--VKARDKYRHPEC--------FVCADCNLNLKQK 64 (89)
T ss_dssp SCCBCTTTCCBCCS-CC--EESSSCEECTTT--------CCCSSSCCCTTTS
T ss_pred cCCCcccCCCEecc-cE--EEECCceECccC--------CEecCCCCCCCCC
Confidence 34579999988874 32 233678899888 4588898887654
No 147
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=40.56 E-value=6.7 Score=22.47 Aligned_cols=12 Identities=33% Similarity=0.764 Sum_probs=8.9
Q ss_pred CCcccccccccC
Q 024056 246 GTCPVCKLRAGS 257 (273)
Q Consensus 246 ~~CP~CR~~v~~ 257 (273)
..||+|+...++
T Consensus 4 ~~CpvCk~q~Pd 15 (28)
T 2jvx_A 4 FCCPKCQYQAPD 15 (28)
T ss_dssp EECTTSSCEESS
T ss_pred ccCccccccCcC
Confidence 468899887665
No 148
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=40.26 E-value=15 Score=25.28 Aligned_cols=47 Identities=21% Similarity=0.292 Sum_probs=30.3
Q ss_pred CCccccccccccccCC-eeEEeCCCCccChhhHHHHH----hcCCCccccccc
Q 024056 207 DELTCTVCLEQVNVGE-IVRSLPCLHQFHANCIDPWL----RQQGTCPVCKLR 254 (273)
Q Consensus 207 ~~~~C~ICle~~~~~~-~v~~lpC~H~FH~~CI~~WL----~~~~~CP~CR~~ 254 (273)
+...| ||......++ .+..-.|...||..|+.--- ...-.||.|+..
T Consensus 15 ~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp SEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred cceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 44568 7988765554 34334499999999975321 123469999754
No 149
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.23 E-value=32 Score=23.80 Aligned_cols=41 Identities=22% Similarity=0.529 Sum_probs=30.2
Q ss_pred CCccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCcccccccccC
Q 024056 207 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGS 257 (273)
Q Consensus 207 ~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v~~ 257 (273)
....|.-|-+.+..++.+.. -+..||.+| ..|-.|+..+..
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a--~~~~wH~~C--------F~C~~C~~~L~~ 54 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLA--LDKQWHVSC--------FKCQTCSVILTG 54 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEE--TTEEECTTT--------CBCSSSCCBCSS
T ss_pred CCCCCcCcCCeeCCCeEEEE--CCccccccc--------CCcCcCCCCcCC
Confidence 34579999999876665544 367888887 468889887763
No 150
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=38.61 E-value=20 Score=20.54 Aligned_cols=27 Identities=26% Similarity=0.357 Sum_probs=19.7
Q ss_pred ccccccccccccCCeeEEeCCCCccChhh
Q 024056 209 LTCTVCLEQVNVGEIVRSLPCLHQFHANC 237 (273)
Q Consensus 209 ~~C~ICle~~~~~~~v~~lpC~H~FH~~C 237 (273)
..|+.|-..+-..|.+. --|..||..|
T Consensus 4 ~~C~~C~k~Vy~~Ek~~--~~g~~~Hk~C 30 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVN--CLDKFWHKAC 30 (31)
T ss_dssp CBCSSSCSBCCGGGCCC--SSSSCCCGGG
T ss_pred CcCCccCCEEecceeEE--ECCeEecccC
Confidence 37999988887665443 3578899888
No 151
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=38.01 E-value=21 Score=33.01 Aligned_cols=45 Identities=16% Similarity=0.446 Sum_probs=31.8
Q ss_pred CCCccccccccccccCCeeEEe--CCCCccChhhHHHHHhc----------CCCcccccc
Q 024056 206 EDELTCTVCLEQVNVGEIVRSL--PCLHQFHANCIDPWLRQ----------QGTCPVCKL 253 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~l--pC~H~FH~~CI~~WL~~----------~~~CP~CR~ 253 (273)
.-+..|.+|-+. ++.+..= .|...||.+||+.++.. .=.|=+|.-
T Consensus 91 G~~~yCr~C~~G---g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 91 GYQSYCSICCSG---ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp SSBCSCTTTCCC---SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred CCcccceEcCCC---CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 345679999875 4555554 59999999999999732 225877753
No 152
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.91 E-value=45 Score=22.70 Aligned_cols=38 Identities=16% Similarity=0.244 Sum_probs=27.2
Q ss_pred CccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCccccccccc
Q 024056 208 ELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAG 256 (273)
Q Consensus 208 ~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v~ 256 (273)
...|..|-+.+.. +. ..--+..||.+|. +|-.|+..+.
T Consensus 15 ~~~C~~C~~~I~~-~~--~~a~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 1x62_A 15 LPMCDKCGTGIVG-VF--VKLRDRHRHPECY--------VCTDCGTNLK 52 (79)
T ss_dssp CCCCSSSCCCCCS-SC--EECSSCEECTTTT--------SCSSSCCCHH
T ss_pred CCccccCCCCccC-cE--EEECcceeCcCcC--------eeCCCCCCCC
Confidence 4579999998874 32 2335788998883 5888887774
No 153
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=34.76 E-value=22 Score=28.76 Aligned_cols=34 Identities=24% Similarity=0.518 Sum_probs=24.9
Q ss_pred CCccccccccccccCCeeEEe--CCCCccChhhHHHHHh
Q 024056 207 DELTCTVCLEQVNVGEIVRSL--PCLHQFHANCIDPWLR 243 (273)
Q Consensus 207 ~~~~C~ICle~~~~~~~v~~l--pC~H~FH~~CI~~WL~ 243 (273)
-+..|.||-+. ++.+..- .|...||.+||+.++.
T Consensus 78 ~~~yC~wC~~G---g~l~~Cdn~~C~r~FC~~CI~~nvG 113 (159)
T 3a1b_A 78 YQSYCTICCGG---REVLMCGNNNCCRCFCVECVDLLVG 113 (159)
T ss_dssp SBSSCTTTSCC---SEEEECSSTTTCCEEEHHHHHHHTC
T ss_pred CcceeeEecCC---CeEEeeCCCCCCCchhHHHHHHhcC
Confidence 45679999975 3333333 4889999999999874
No 154
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.15 E-value=37 Score=23.19 Aligned_cols=42 Identities=26% Similarity=0.517 Sum_probs=29.6
Q ss_pred CccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCcccccccccCC
Q 024056 208 ELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSG 258 (273)
Q Consensus 208 ~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v~~~ 258 (273)
...|..|-..+..++.+. ..-+..||.+| .+|-.|+..+...
T Consensus 15 ~~~C~~C~~~I~~~~~~~-~a~~~~~H~~C--------F~C~~C~~~L~~~ 56 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNV-EYKGTVWHKDC--------FTCSNCKQVIGTG 56 (82)
T ss_dssp SCBCSSSCCBCCSSSCEE-ECSSCEEETTT--------CCCSSSCCCCTTS
T ss_pred CCcCccCCcccccCceEE-EECcccccccc--------CchhhCCCccCCC
Confidence 347999999888655432 23477889887 3588888877654
No 155
>2rqw_B 24-meric peptide from serine/threonine-protein KI STE20; BEM1P, STE20P, SH3CI, PRR, cytoplasm, cytoskeleton, SH3 DOMA cycle; NMR {Saccharomyces cerevisiae}
Probab=33.22 E-value=13 Score=20.70 Aligned_cols=11 Identities=36% Similarity=0.619 Sum_probs=8.6
Q ss_pred CCCCCcccccc
Q 024056 18 GFIPERRTVRI 28 (273)
Q Consensus 18 ~~~~~~~~~~~ 28 (273)
-|||-||+=+-
T Consensus 7 KFiPsRPAPKP 17 (26)
T 2rqw_B 7 KFIPSRPAPKP 17 (26)
T ss_dssp SSCCSSCCCCC
T ss_pred ccccCCCCCCC
Confidence 59999998553
No 156
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.03 E-value=39 Score=23.38 Aligned_cols=42 Identities=29% Similarity=0.431 Sum_probs=30.2
Q ss_pred CccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCcccccccccCCC
Q 024056 208 ELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSGW 259 (273)
Q Consensus 208 ~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v~~~~ 259 (273)
...|..|-..+...+.+. --+..||.+| .+|-.|+..+....
T Consensus 15 ~~~C~~C~~~I~~~e~v~--a~~~~wH~~C--------F~C~~C~~~L~~~~ 56 (82)
T 2co8_A 15 GDLCALCGEHLYVLERLC--VNGHFFHRSC--------FRCHTCEATLWPGG 56 (82)
T ss_dssp SCBCSSSCCBCCTTTBCC--BTTBCCBTTT--------CBCSSSCCBCCTTS
T ss_pred CCCCcccCCCcccceEEE--ECCCeeCCCc--------CEEcCCCCCcCCCc
Confidence 457999999887665543 3477899888 46888887776544
No 157
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=32.67 E-value=43 Score=20.07 Aligned_cols=8 Identities=38% Similarity=1.024 Sum_probs=4.5
Q ss_pred HHHHHHhc
Q 024056 46 LLLFMILN 53 (273)
Q Consensus 46 ~~~~~~~~ 53 (273)
.++||+|.
T Consensus 17 ~vif~~lg 24 (40)
T 2l9u_A 17 VVIFMMLG 24 (40)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhC
Confidence 34666663
No 158
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=32.58 E-value=6.6 Score=29.70 Aligned_cols=25 Identities=24% Similarity=0.460 Sum_probs=15.9
Q ss_pred EeCCCCccChhhHHHHHhcCCCcccccccc
Q 024056 226 SLPCLHQFHANCIDPWLRQQGTCPVCKLRA 255 (273)
Q Consensus 226 ~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v 255 (273)
...||+.|. .=+.....||.|+..-
T Consensus 70 C~~CG~~F~-----~~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 70 CRKCGFVFK-----AEINIPSRCPKCKSEW 94 (105)
T ss_dssp BTTTCCBCC-----CCSSCCSSCSSSCCCC
T ss_pred hhhCcCeec-----ccCCCCCCCcCCCCCc
Confidence 356899981 1123456799998754
No 159
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=32.51 E-value=27 Score=27.95 Aligned_cols=46 Identities=22% Similarity=0.481 Sum_probs=30.1
Q ss_pred CCccccccccccc--cCCeeEEeCCCCccChhhHHHHHhcCC--Ccccccc
Q 024056 207 DELTCTVCLEQVN--VGEIVRSLPCLHQFHANCIDPWLRQQG--TCPVCKL 253 (273)
Q Consensus 207 ~~~~C~ICle~~~--~~~~v~~lpC~H~FH~~CI~~WL~~~~--~CP~CR~ 253 (273)
++..|.+|...|. .+-......|.|.+|..|- .|+.... .|-+|+.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~-~~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS-HAHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE-ECCSSSSSCEEHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc-cccCCCCcEeeHHHHH
Confidence 4568999999864 3334445569999999996 2433322 3666644
No 160
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=31.99 E-value=24 Score=33.66 Aligned_cols=44 Identities=23% Similarity=0.477 Sum_probs=28.3
Q ss_pred cccccccccc-CCeeEEeCCCCccChhhHHHHHh-----cCCCccccccc
Q 024056 211 CTVCLEQVNV-GEIVRSLPCLHQFHANCIDPWLR-----QQGTCPVCKLR 254 (273)
Q Consensus 211 C~ICle~~~~-~~~v~~lpC~H~FH~~CI~~WL~-----~~~~CP~CR~~ 254 (273)
.+||...+.. +..+.+-.|...||..|+.---. ..-.||.|+..
T Consensus 39 yC~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 88 (488)
T 3kv5_D 39 YCVCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVL 88 (488)
T ss_dssp ETTTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHH
T ss_pred EEeCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCC
Confidence 3499887753 33444445999999999842111 12469999754
No 161
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.96 E-value=86 Score=21.85 Aligned_cols=41 Identities=29% Similarity=0.544 Sum_probs=26.9
Q ss_pred CccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCcccccccccCC
Q 024056 208 ELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSG 258 (273)
Q Consensus 208 ~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v~~~ 258 (273)
...|.-|-+.+...+.+ ..-+..||..| ..|-.|...+...
T Consensus 15 ~~~C~~C~~~I~~~~~v--~a~~~~~H~~C--------F~C~~C~~~L~~~ 55 (91)
T 2d8y_A 15 RETCVECQKTVYPMERL--LANQQVFHISC--------FRCSYCNNKLSLG 55 (91)
T ss_dssp SCBCTTTCCBCCTTSEE--ECSSSEEETTT--------CBCTTTCCBCCTT
T ss_pred CCcCccCCCccCCceeE--EECCCEECCCC--------CeeCCCCCCCCCC
Confidence 44788888887765543 34567788777 3477777666554
No 162
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.59 E-value=45 Score=22.35 Aligned_cols=42 Identities=21% Similarity=0.421 Sum_probs=28.6
Q ss_pred CccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCcccccccccCC
Q 024056 208 ELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSG 258 (273)
Q Consensus 208 ~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v~~~ 258 (273)
...|.-|-+.+...+.+.. .-+..||..| .+|-.|+..+..+
T Consensus 11 ~~~C~~C~~~I~~~~~~~~-a~~~~~H~~C--------F~C~~C~~~L~~~ 52 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIVN-SNGELYHEQC--------FVCAQCFQQFPEG 52 (77)
T ss_dssp CCBCSSSCCBCCSTTTCEE-ETTEEECTTT--------CCCTTTCCCCGGG
T ss_pred CCCchhcCCccCCCceEEE-eCccEecccc--------CeECCCCCCCCCC
Confidence 4579999998875444322 2466788877 4588888877654
No 163
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.18 E-value=53 Score=21.57 Aligned_cols=38 Identities=16% Similarity=0.417 Sum_probs=24.9
Q ss_pred ccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCcccccccccC
Q 024056 209 LTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGS 257 (273)
Q Consensus 209 ~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v~~ 257 (273)
..|..|-..+.. +. ...-+..||.+| .+|-.|+..+..
T Consensus 6 ~~C~~C~~~I~~-~~--~~a~~~~~H~~C--------F~C~~C~~~L~~ 43 (70)
T 2d8z_A 6 SGCVQCKKPITT-GG--VTYREQPWHKEC--------FVCTACRKQLSG 43 (70)
T ss_dssp CBCSSSCCBCCS-SE--EESSSSEEETTT--------SBCSSSCCBCTT
T ss_pred CCCcccCCeecc-ce--EEECccccCCCC--------CccCCCCCcCCc
Confidence 368888887763 32 233567788777 357788777753
No 164
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=29.66 E-value=7 Score=26.31 Aligned_cols=36 Identities=19% Similarity=0.477 Sum_probs=23.5
Q ss_pred ccccccccccccCCee---EEeC--CCCccChhhHHHHHhc
Q 024056 209 LTCTVCLEQVNVGEIV---RSLP--CLHQFHANCIDPWLRQ 244 (273)
Q Consensus 209 ~~C~ICle~~~~~~~v---~~lp--C~H~FH~~CI~~WL~~ 244 (273)
..|+-|...++..+.. .... |++.||..|..+|-..
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 4688887777654422 2222 7888988888887543
No 165
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.28 E-value=42 Score=22.21 Aligned_cols=41 Identities=20% Similarity=0.388 Sum_probs=27.0
Q ss_pred ccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCcccccccccCC
Q 024056 209 LTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSG 258 (273)
Q Consensus 209 ~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v~~~ 258 (273)
..|..|-+.+...+.+.. .-+..||.+| .+|-.|+..+...
T Consensus 6 ~~C~~C~~~I~~~~~~~~-a~~~~~H~~C--------F~C~~C~~~L~~~ 46 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKME-YKGSSWHETC--------FICHRCQQPIGTK 46 (72)
T ss_dssp CCBSSSCCCCCSSSCEEE-ETTEEEETTT--------TCCSSSCCCCCSS
T ss_pred CCCccCCCcccCCceEEE-ECcCeecccC--------CcccccCCccCCC
Confidence 368888888876543322 2466788777 3578887777654
No 166
>1jdm_A Sarcolipin; helix, membrane protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=29.23 E-value=44 Score=19.14 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=16.8
Q ss_pred cccCcchhHHHHHHHHHHHHhccCc
Q 024056 32 RPVNSNSLAFLVTVLLLFMILNSHQ 56 (273)
Q Consensus 32 ~~~~~~~~~~l~~~~~~~~~~~~~~ 56 (273)
|-.=.|..+.|++++++..++-|-|
T Consensus 6 qELf~NFt~vLI~vlLi~llVrsyq 30 (31)
T 1jdm_A 6 RELFLNFTIVLITVILMWLLVRSYQ 30 (31)
T ss_dssp SSSHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444577788888888777765533
No 167
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.81 E-value=55 Score=21.61 Aligned_cols=38 Identities=24% Similarity=0.426 Sum_probs=20.6
Q ss_pred cccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCccccccccc
Q 024056 210 TCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAG 256 (273)
Q Consensus 210 ~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v~ 256 (273)
.|..|-+.+...+.+. ..-+..||.+| ..|-.|+..+.
T Consensus 7 ~C~~C~~~I~~~~~~~-~a~~~~~H~~C--------F~C~~C~~~L~ 44 (72)
T 1x61_A 7 GCGGCGEDVVGDGAGV-VALDRVFHVGC--------FVCSTCRAQLR 44 (72)
T ss_dssp CCSSSCSCCCSSSCCE-ECSSSEECTTT--------CBCSSSCCBCT
T ss_pred CCccCCCccCCCceEE-EECCCeEcccC--------CcccccCCcCC
Confidence 5777776665432221 12356667666 34666666663
No 168
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=28.11 E-value=55 Score=24.26 Aligned_cols=28 Identities=29% Similarity=0.439 Sum_probs=18.6
Q ss_pred CCCccChhhH------HHHHhc-----CCCccccccccc
Q 024056 229 CLHQFHANCI------DPWLRQ-----QGTCPVCKLRAG 256 (273)
Q Consensus 229 C~H~FH~~CI------~~WL~~-----~~~CP~CR~~v~ 256 (273)
|++.||..|+ .+-+.. ...||.|...-.
T Consensus 8 c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~~~ 46 (140)
T 2ku7_A 8 CDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHV 46 (140)
T ss_dssp CSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTTSC
T ss_pred CCCccCCcccccCHHHHHHHhhccccceeeCcccccccc
Confidence 8999999995 122332 357999965433
No 169
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=27.97 E-value=35 Score=25.57 Aligned_cols=37 Identities=19% Similarity=0.363 Sum_probs=24.6
Q ss_pred CCCccccccccccccCCeeEEeCCCCccChhhHHHHHh
Q 024056 206 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLR 243 (273)
Q Consensus 206 ~~~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~ 243 (273)
.+-..|..|-..+..++.. ...=+..||..|..+.+.
T Consensus 34 ~~CF~C~~C~~~L~~g~~f-~~~~g~~yC~~cy~~~~~ 70 (123)
T 2l3k_A 34 LECFKCAACQKHFSVGDRY-LLINSDIVCEQDIYEWTK 70 (123)
T ss_dssp TTTCBCTTTCCBCCTTCEE-EECSSSEEEGGGHHHHHH
T ss_pred cccCccccCCCCCCCCCcE-EeeCCEEEcHHHhHHHhc
Confidence 4567888888887555433 233467788888877654
No 170
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=27.51 E-value=25 Score=24.09 Aligned_cols=40 Identities=30% Similarity=0.512 Sum_probs=25.8
Q ss_pred ccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCcccccccccCC
Q 024056 209 LTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSG 258 (273)
Q Consensus 209 ~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v~~~ 258 (273)
..|..|-+.+..++.+.. -+..||.+|. +|-.|+..+...
T Consensus 8 ~~C~~C~~~I~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~~ 47 (81)
T 1a7i_A 8 NKCGACGRTVYHAEEVQC--DGRSFHRCCF--------LCMVCRKNLDST 47 (81)
T ss_dssp CBCSSSCCBCSSTTEEEE--TTEEEESSSE--------ECSSSCCEECSS
T ss_pred CcCcCcCccccCceeEEe--CCcccccccC--------ccCCCCCCCCCC
Confidence 468888888765554322 4667777763 477777766544
No 171
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=27.34 E-value=28 Score=22.96 Aligned_cols=42 Identities=21% Similarity=0.470 Sum_probs=30.2
Q ss_pred CccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCcccccccccCC
Q 024056 208 ELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSG 258 (273)
Q Consensus 208 ~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v~~~ 258 (273)
...|.-|-..+...+.+.. .-+..||..|. .|-.|...+..+
T Consensus 11 ~~~C~~C~~~i~~~e~~~~-~~~~~~H~~CF--------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVN-SNGELYHEQCF--------VCAQCFQQFPEG 52 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEE-ETTEEEETTTS--------SCTTTCCCCGGG
T ss_pred CccchhcCccccCCceEEE-eCcCeeCcCCC--------cccCCCCCCCCC
Confidence 4479999999886665432 24667888884 688888877655
No 172
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.73 E-value=62 Score=22.09 Aligned_cols=40 Identities=13% Similarity=0.349 Sum_probs=28.2
Q ss_pred CccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCcccccccccCC
Q 024056 208 ELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSG 258 (273)
Q Consensus 208 ~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v~~~ 258 (273)
...|.-|-..+. ++.+ .--+..||.+| .+|-.|+..+...
T Consensus 15 ~~~C~~C~~~I~-~~~v--~a~~~~~H~~C--------F~C~~C~~~L~~~ 54 (79)
T 2cor_A 15 KYICQKCHAIID-EQPL--IFKNDPYHPDH--------FNCANCGKELTAD 54 (79)
T ss_dssp CCBCTTTCCBCC-SCCC--CCSSSCCCTTT--------SBCSSSCCBCCTT
T ss_pred CCCCccCCCEec-ceEE--EECcceeCCCC--------CEeCCCCCccCCC
Confidence 457999988887 4332 23577888877 4688898887754
No 173
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.55 E-value=58 Score=21.46 Aligned_cols=41 Identities=27% Similarity=0.413 Sum_probs=27.0
Q ss_pred ccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCcccccccccCC
Q 024056 209 LTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSG 258 (273)
Q Consensus 209 ~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v~~~ 258 (273)
..|..|-..+..++.+ ...-+..||..| .+|-.|+..+...
T Consensus 6 ~~C~~C~~~I~~~~~~-~~a~~~~~H~~C--------F~C~~C~~~L~~~ 46 (72)
T 1wyh_A 6 SGCSACGETVMPGSRK-LEYGGQTWHEHC--------FLCSGCEQPLGSR 46 (72)
T ss_dssp CBCSSSCCBCCSSSCE-ECSTTCCEETTT--------CBCTTTCCBTTTS
T ss_pred CCCccCCCccccCccE-EEECccccCccc--------CeECCCCCcCCCC
Confidence 4688888887754332 223577888877 3578887777543
No 174
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=26.08 E-value=49 Score=21.51 Aligned_cols=38 Identities=18% Similarity=0.379 Sum_probs=26.9
Q ss_pred ccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCcccccccccC
Q 024056 209 LTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGS 257 (273)
Q Consensus 209 ~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v~~ 257 (273)
..|+.|-+.+. ++. ...-+..||..| ..|-.|+..+..
T Consensus 6 ~~C~~C~~~I~-~~~--~~a~~~~~H~~C--------F~C~~C~~~L~~ 43 (66)
T 1nyp_A 6 PICGACRRPIE-GRV--VNAMGKQWHVEH--------FVCAKCEKPFLG 43 (66)
T ss_dssp CEETTTTEECC-SCE--ECCTTSBEETTT--------CBCTTTCCBCSS
T ss_pred CCCcccCCEec-ceE--EEECccccccCc--------CEECCCCCCCCC
Confidence 46899988887 432 233577888877 468888887764
No 175
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.04 E-value=63 Score=21.35 Aligned_cols=40 Identities=23% Similarity=0.410 Sum_probs=26.8
Q ss_pred cccccccccccc--CCeeEEeCCCCccChhhHHHHHhcCCCcccccccccC
Q 024056 209 LTCTVCLEQVNV--GEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGS 257 (273)
Q Consensus 209 ~~C~ICle~~~~--~~~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v~~ 257 (273)
..|.-|-+.+.. .+.+ ...-+..||.+| .+|-.|+..+..
T Consensus 6 ~~C~~C~~~I~~~~~~~~-~~a~~~~wH~~C--------F~C~~C~~~L~~ 47 (72)
T 1x4l_A 6 SGCAGCTNPISGLGGTKY-ISFEERQWHNDC--------FNCKKCSLSLVG 47 (72)
T ss_dssp CSBTTTTBCCCCSSSCSC-EECSSCEECTTT--------CBCSSSCCBCTT
T ss_pred CCCcCCCccccCCCCcce-EEECCcccCccc--------CEeccCCCcCCC
Confidence 468889888874 2222 223577888887 368888877753
No 176
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=25.34 E-value=21 Score=21.25 Aligned_cols=9 Identities=22% Similarity=1.006 Sum_probs=4.4
Q ss_pred ccccccccc
Q 024056 209 LTCTVCLEQ 217 (273)
Q Consensus 209 ~~C~ICle~ 217 (273)
..||||+.+
T Consensus 6 FiCP~C~~~ 14 (34)
T 3mjh_B 6 FICPQCMKS 14 (34)
T ss_dssp EECTTTCCE
T ss_pred cCCcHHHHH
Confidence 345555544
No 177
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=24.55 E-value=28 Score=23.57 Aligned_cols=46 Identities=20% Similarity=0.437 Sum_probs=27.9
Q ss_pred CCccccccccccccCCeeEEe--CCCCccChhhHHHH---Hh-----cCCCcccccc
Q 024056 207 DELTCTVCLEQVNVGEIVRSL--PCLHQFHANCIDPW---LR-----QQGTCPVCKL 253 (273)
Q Consensus 207 ~~~~C~ICle~~~~~~~v~~l--pC~H~FH~~CI~~W---L~-----~~~~CP~CR~ 253 (273)
+...| ||-.....+..+..= .|...||..|+.-- .. .+-.||.||.
T Consensus 9 ~~v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 9 AKVRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp CEECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CCEEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 34456 897765555444332 38889999997310 01 1346999975
No 178
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=24.46 E-value=6.4 Score=27.94 Aligned_cols=14 Identities=21% Similarity=0.660 Sum_probs=12.8
Q ss_pred CCCCccChhhHHHH
Q 024056 228 PCLHQFHANCIDPW 241 (273)
Q Consensus 228 pC~H~FH~~CI~~W 241 (273)
.|++.||..|-..|
T Consensus 55 ~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 55 GCGFAFCRECKEAY 68 (80)
T ss_dssp CCSCCEETTTTEEC
T ss_pred CCCCeeccccCccc
Confidence 59999999999888
No 179
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=23.90 E-value=16 Score=34.45 Aligned_cols=46 Identities=20% Similarity=0.426 Sum_probs=29.8
Q ss_pred ccccccccccc-CCeeEEeCCCCccChhhHHHH---Hh--cCCCcccccccc
Q 024056 210 TCTVCLEQVNV-GEIVRSLPCLHQFHANCIDPW---LR--QQGTCPVCKLRA 255 (273)
Q Consensus 210 ~C~ICle~~~~-~~~v~~lpC~H~FH~~CI~~W---L~--~~~~CP~CR~~v 255 (273)
..+||...+.. +..+.+=.|...||..|+.-- .. .+-.||.|+...
T Consensus 6 ~yCiC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~~ 57 (447)
T 3kv4_A 6 VYCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLH 57 (447)
T ss_dssp EETTTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHHHH
T ss_pred eEEeCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCcccc
Confidence 46699887653 334444459999999998321 11 234799997643
No 180
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.49 E-value=43 Score=22.07 Aligned_cols=39 Identities=21% Similarity=0.527 Sum_probs=25.3
Q ss_pred ccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCcccccccccCC
Q 024056 209 LTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSG 258 (273)
Q Consensus 209 ~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v~~~ 258 (273)
..|..|-+.+. ++.+. .-+..||.+| .+|-.|+..+...
T Consensus 6 ~~C~~C~~~I~-~~~~~--a~~~~~H~~C--------F~C~~C~~~L~~~ 44 (70)
T 2d8x_A 6 SGCHQCGEFII-GRVIK--AMNNSWHPEC--------FRCDLCQEVLADI 44 (70)
T ss_dssp SBCSSSCCBCC-SCCEE--ETTEEECTTT--------SBCSSSCCBCSSS
T ss_pred CcCccCCCEec-ceEEE--ECcccccccC--------CEeCCCCCcCCCC
Confidence 46888888776 33322 2466788877 3577887777654
No 181
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.75 E-value=63 Score=21.89 Aligned_cols=38 Identities=21% Similarity=0.507 Sum_probs=25.8
Q ss_pred ccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCcccccccccC
Q 024056 209 LTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGS 257 (273)
Q Consensus 209 ~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v~~ 257 (273)
..|..|-+.+. ++.+ ..-+..||.+| ..|-.|+..+..
T Consensus 16 ~~C~~C~~~I~-~~~~--~a~~~~~H~~C--------F~C~~C~~~L~~ 53 (81)
T 1x6a_A 16 EFCHGCSLLMT-GPFM--VAGEFKYHPEC--------FACMSCKVIIED 53 (81)
T ss_dssp CBCTTTCCBCC-SCCB--CCTTCCBCTTS--------CBCTTTCCBCCT
T ss_pred CcCccCCCCcC-ceEE--EECCceecccc--------CCccCCCCccCC
Confidence 46888888877 3322 23567788777 358888887764
No 182
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=21.23 E-value=60 Score=24.17 Aligned_cols=50 Identities=14% Similarity=0.080 Sum_probs=34.8
Q ss_pred CCcccccccccccc-CCeeEEeCCCCccChhhHHHHHhcCCCcccccccccC
Q 024056 207 DELTCTVCLEQVNV-GEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGS 257 (273)
Q Consensus 207 ~~~~C~ICle~~~~-~~~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v~~ 257 (273)
+-..|..|-..+.. +.. ....=+..||..|..+-+..+..|-.|...|..
T Consensus 31 ~CF~C~~C~~~L~~~~~~-~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 31 RCLKCSSCQAQLGDIGTS-SYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSG 81 (122)
T ss_dssp HHHCCSSSCCCTTTSEEC-CEEETTEEECHHHHHHHHCCCCSSSCSSCCSCC
T ss_pred hCCCcCCCCCcccccCCe-EEEECCeeecHHHHHHHcCCCCccccCCCCcCc
Confidence 45688889888752 211 223356779999988866655589999888875
No 183
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.13 E-value=72 Score=21.37 Aligned_cols=36 Identities=17% Similarity=0.498 Sum_probs=19.8
Q ss_pred cccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCccccccccc
Q 024056 210 TCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAG 256 (273)
Q Consensus 210 ~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v~ 256 (273)
.|+-|-..+.. +.+ ..-+..||.+| .+|-.|+..+.
T Consensus 7 ~C~~C~~~I~~-~~v--~a~~~~wH~~C--------F~C~~C~~~L~ 42 (73)
T 1wig_A 7 GCDSCEKYITG-RVL--EAGEKHYHPSC--------ALCVRCGQMFA 42 (73)
T ss_dssp SCSSSCCCCSS-CCB--CCSSCCBCTTT--------SCCSSSCCCCC
T ss_pred CcccCCCEecC-eeE--EeCCCCCCCCc--------CEeCCCCCCCC
Confidence 57777666553 221 23456677666 34666665554
No 184
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.92 E-value=53 Score=21.54 Aligned_cols=37 Identities=19% Similarity=0.447 Sum_probs=23.7
Q ss_pred ccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCccccccccc
Q 024056 209 LTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAG 256 (273)
Q Consensus 209 ~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v~ 256 (273)
..|.-|-+.+.. +.+. .-+..||.+| .+|-.|+..+.
T Consensus 6 ~~C~~C~~~I~~-~~~~--a~~~~~H~~C--------F~C~~C~~~L~ 42 (69)
T 2cur_A 6 SGCVKCNKAITS-GGIT--YQDQPWHADC--------FVCVTCSKKLA 42 (69)
T ss_dssp CCCSSSCCCCCT-TCEE--ETTEEECTTT--------TBCTTTCCBCT
T ss_pred CCCcccCCEeCc-ceEE--ECccccccCc--------CEECCCCCCCC
Confidence 368888877763 3332 2466778777 35777877765
No 185
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=20.38 E-value=1.2e+02 Score=22.67 Aligned_cols=39 Identities=18% Similarity=0.421 Sum_probs=29.0
Q ss_pred CccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCccccccccc
Q 024056 208 ELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAG 256 (273)
Q Consensus 208 ~~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v~ 256 (273)
...|.-|-..+.....+. --+..||..| .+|-.|+..+.
T Consensus 61 ~~~C~~C~~~I~~~~~v~--a~~~~wH~~C--------F~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLY--AMDSYWHSRC--------LKCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEE--ETTEEEETTT--------SBCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEE--eCCcEEcccc--------cCcCcCCCccc
Confidence 457999999887543232 3577899888 56999998886
No 186
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.29 E-value=55 Score=22.27 Aligned_cols=39 Identities=31% Similarity=0.721 Sum_probs=26.8
Q ss_pred ccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCcccccccccCC
Q 024056 209 LTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSG 258 (273)
Q Consensus 209 ~~C~ICle~~~~~~~v~~lpC~H~FH~~CI~~WL~~~~~CP~CR~~v~~~ 258 (273)
..|..|-..+. ++.+. .-+..||.+| .+|-.|+..+..+
T Consensus 16 ~~C~~C~~~I~-~~~v~--a~~~~wH~~C--------F~C~~C~~~L~~~ 54 (81)
T 1v6g_A 16 TRCFSCDQFIE-GEVVS--ALGKTYHPDC--------FVCAVCRLPFPPG 54 (81)
T ss_dssp CBCTTTCCBCC-SCCEE--ETTEEECTTT--------SSCSSSCCCCCSS
T ss_pred CcCccccCEec-cceEE--ECCceeCccC--------CccccCCCCCCCC
Confidence 47999999887 44332 2467888877 3577887777544
No 187
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=20.03 E-value=1e+02 Score=21.58 Aligned_cols=28 Identities=21% Similarity=0.356 Sum_probs=18.5
Q ss_pred CCccccccccccccCCeeEEeCCCCccChh
Q 024056 207 DELTCTVCLEQVNVGEIVRSLPCLHQFHAN 236 (273)
Q Consensus 207 ~~~~C~ICle~~~~~~~v~~lpC~H~FH~~ 236 (273)
....|..|-..+.-. ...-.|+..||..
T Consensus 24 ~~~RC~~C~kkvgL~--~f~CrCg~~FCs~ 51 (74)
T 1wfp_A 24 TATRCLSCNKKVGVT--GFKCRCGSTFCGT 51 (74)
T ss_dssp CCCBCSSSCCBCTTT--CEECTTSCEECTT
T ss_pred cCccchhhcCccccc--ceEeccCCEeccc
Confidence 445799998775432 1333699999864
Done!