Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>024057
MAVEATSSFLSCSSKTHFLFNLRASSSPSSWKKFTQSANFAAKNRHVCRNERPNVSCSAA
AFAVQETLEKTRESVMASSAKEMMPKIDKSGRFCSPRAARELALLVVYAACLEGSDPIRL
FEKRLNSRREPGYEFDKSSLLEYNHMSFGGPPVTTETVEEADELLRSDEEESAIEAEVLS
APPKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKDQPAGRILELSILHLAMS
EITVVGTRHQIVINEARLTLHFLFIVCFSSSTI

High Scoring Gene Products

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  024057
        (273 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2131428 - symbol:AT4G26370 species:3702 "Arabi...   751  1.9e-74   1


>TAIR|locus:2131428 [details] [associations]
            symbol:AT4G26370 species:3702 "Arabidopsis thaliana"
            [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA;ISS] [GO:0009507
            "chloroplast" evidence=ISM;IDA] [GO:0009073 "aromatic amino acid
            family biosynthetic process" evidence=RCA] [GO:0010103 "stomatal
            complex morphogenesis" evidence=RCA] [GO:0016226 "iron-sulfur
            cluster assembly" evidence=RCA] [GO:0042793 "transcription from
            plastid promoter" evidence=RCA] [GO:0045893 "positive regulation of
            transcription, DNA-dependent" evidence=RCA] InterPro:IPR006027
            Pfam:PF01029 GO:GO:0009507 EMBL:CP002687 GO:GO:0006355
            GO:GO:0003723 Gene3D:1.10.940.10 SUPFAM:SSF48013 EMBL:AY054564
            EMBL:BT008707 IPI:IPI00535428 RefSeq:NP_567745.1 UniGene:At.2177
            ProteinModelPortal:Q93XY7 SMR:Q93XY7 STRING:Q93XY7 PRIDE:Q93XY7
            EnsemblPlants:AT4G26370.1 GeneID:828743 KEGG:ath:AT4G26370
            TAIR:At4g26370 HOGENOM:HOG000240288 InParanoid:Q93XY7 OMA:PPKLVYS
            PhylomeDB:Q93XY7 ProtClustDB:CLSN2689621 Genevestigator:Q93XY7
            Uniprot:Q93XY7
        Length = 301

 Score = 751 (269.4 bits), Expect = 1.9e-74, P = 1.9e-74
 Identities = 159/258 (61%), Positives = 187/258 (72%)

Query:     3 VEATSSFLSCSSKTHFLFNLRASSSPSSWKK--FTQSANFAAKNRHVCRNERPNVSCSAA 60
             +E T S L   S ++  +   ++ SP S +   FT   +    N    R      S S+ 
Sbjct:     1 MEGTFSPLCLRSSSNLCY-FSSNVSPDSHRSIGFTLVDSLRPTNLVSLRTGNKRSSSSSL 59

Query:    61 AFAVQETLEKTRE-SVMASSAKEM-MPKIDKSGRFCSPRAARELALLVVYAACLEGSDPI 118
                +  T    R  ++ A   K++ MPKIDKSGR  SPRAARELAL+++YAACLEGSDPI
Sbjct:    60 RLFLSPTRSALRTPTISAEEVKDVPMPKIDKSGRLSSPRAARELALVILYAACLEGSDPI 119

Query:   119 RLFEKRLNSRREPGYEFDKSSLLEYNHMSFGGPPVTTETVEEADELLRSDEEESAIEAEV 178
             RLFEKR+N+RREPGYEFDKSSLLEYNHMSFGGPPV TET EE DEL+R DE+ES IEAEV
Sbjct:   120 RLFEKRINARREPGYEFDKSSLLEYNHMSFGGPPVKTETKEEEDELVRHDEKESKIEAEV 179

Query:   179 LSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKDQPAGRILELSILHLA 238
             LSAPPKLVYSKL+LRF +KLL AVVDKWD+HV II+K+ PP WK  PAGRILE SILHLA
Sbjct:   180 LSAPPKLVYSKLVLRFAKKLLAAVVDKWDSHVVIIEKISPPDWKSAPAGRILEFSILHLA 239

Query:   239 MSEITVVGTRHQIVINEA 256
             MSE+ V+ TRH IVINEA
Sbjct:   240 MSEVAVLETRHPIVINEA 257


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.130   0.375    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      273       273    0.0010  114 3  11 22  0.47    33
                                                     32  0.40    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  616 (65 KB)
  Total size of DFA:  195 KB (2110 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  25.63u 0.09s 25.72t   Elapsed:  00:00:02
  Total cpu time:  25.63u 0.09s 25.72t   Elapsed:  00:00:02
  Start:  Sat May 11 08:56:46 2013   End:  Sat May 11 08:56:48 2013

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