BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024057
(273 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A7GWZ7|NUSB_CAMC5 N utilization substance protein B homolog OS=Campylobacter curvus
(strain 525.92) GN=nusB PE=3 SV=1
Length = 131
Score = 35.4 bits (80), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 213 IDKVVPPIWKDQPAGRI--LELSILHLAMSEITVVGTRHQIVINEA 256
+D+++ P K++ RI +EL+IL L + E+ GT ++INEA
Sbjct: 59 LDEILKPYLKEKDIERIGIVELAILRLGVYEMKFTGTDKAVIINEA 104
>sp|Q87RU3|NUSB_VIBPA N utilization substance protein B homolog OS=Vibrio
parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
GN=nusB PE=3 SV=1
Length = 155
Score = 32.7 bits (73), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 6/105 (5%)
Query: 153 VTTETVEEADELLRSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHI 212
+T E V +E S ++ E E+ ++ P L + + + R+LL VV +H +
Sbjct: 26 ITKENVATIEEQFLSGDKYD--EEELRASEPALAAPETDVAYFRELLSGVVL---SHAEL 80
Query: 213 IDKVVPPIWKDQPAGRILELSILHLAMSEIT-VVGTRHQIVINEA 256
K+ P + + ++EL++L LAM E+T +++VINEA
Sbjct: 81 DSKIRPYVSRPMQDLDMMELALLRLAMYEMTRREDVPYKVVINEA 125
>sp|Q8B912|RPOA_PRRSB Replicase polyprotein 1ab OS=Porcine reproductive and respiratory
syndrome virus (strain HB-1) GN=rep PE=2 SV=3
Length = 3961
Score = 32.3 bits (72), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 11/63 (17%)
Query: 87 IDKSGRFCSPRAARELALLVVYAACLEGSDPI-----------RLFEKRLNSRREPGYEF 135
ID RFC+P+ + L V+ C G PI +L EKR+ +R +
Sbjct: 1425 IDLCDRFCAPKGMDPIFLATVWRGCWTGRSPIEQPSEKPIAFAQLDEKRITARTVVAQPY 1484
Query: 136 DKS 138
D +
Sbjct: 1485 DPN 1487
>sp|A8G9Z9|MUTS_SERP5 DNA mismatch repair protein MutS OS=Serratia proteamaculans (strain
568) GN=mutS PE=3 SV=1
Length = 851
Score = 32.3 bits (72), Expect = 4.0, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 15/89 (16%)
Query: 90 SGRFCSPRAARELALLVVYAACLEGSDP-----------IRLFEKRLNSRREPGYEFDKS 138
SGRF R A E A + AA L+ ++P + L E+R RR P +EF+
Sbjct: 152 SGRF---RVA-EPADIETMAAELQRTNPAELLYPETFEQMSLIEQRHGLRRRPLWEFEPE 207
Query: 139 SLLEYNHMSFGGPPVTTETVEEADELLRS 167
+ + ++ FG +T VE+A + LR+
Sbjct: 208 TARQQLNLQFGTRDLTGFGVEQAHQALRA 236
>sp|Q9Y4E1|FA21C_HUMAN WASH complex subunit FAM21C OS=Homo sapiens GN=FAM21C PE=1 SV=3
Length = 1318
Score = 32.0 bits (71), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 7/56 (12%)
Query: 148 FGGPPVTT-------ETVEEADELLRSDEEESAIEAEVLSAPPKLVYSKLLLRFTR 196
FG PP + ETV EA LL SDEEE + V S K+ +K L+F R
Sbjct: 700 FGSPPTSVPPATKKKETVSEAPPLLFSDEEEKEAQLGVKSVDKKVESAKESLKFGR 755
>sp|Q641Q2|FA21A_HUMAN WASH complex subunit FAM21A OS=Homo sapiens GN=FAM21A PE=2 SV=3
Length = 1341
Score = 32.0 bits (71), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 7/56 (12%)
Query: 148 FGGPPVT-------TETVEEADELLRSDEEESAIEAEVLSAPPKLVYSKLLLRFTR 196
FG PP + ETV EA LL SDEEE + V S K+ +K L+F R
Sbjct: 702 FGSPPTSVPPATKKKETVSEAPPLLFSDEEEKEAQLGVKSVDKKVESAKESLKFGR 757
>sp|Q5SNT6|FA21B_HUMAN WASH complex subunit FAM21B OS=Homo sapiens GN=FAM21B PE=2 SV=2
Length = 1253
Score = 32.0 bits (71), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 7/56 (12%)
Query: 148 FGGPPVT-------TETVEEADELLRSDEEESAIEAEVLSAPPKLVYSKLLLRFTR 196
FG PP + ETV EA LL SDEEE + V S K+ +K L+F R
Sbjct: 614 FGSPPTSVPPATKKKETVSEAPPLLFSDEEEKEAQLGVKSVDKKVESAKESLKFGR 669
>sp|Q5N1J7|NUSB_SYNP6 N utilization substance protein B homolog OS=Synechococcus sp.
(strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=nusB
PE=3 SV=1
Length = 213
Score = 31.6 bits (70), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 213 IDKVVPPIWKDQPAGRI--LELSILHLAMSEITVVGTRHQIVINEA 256
ID+ + + D R+ L+ IL LA +EI +GT Q+ INEA
Sbjct: 130 IDRTLNDVMVDWQLHRVPRLDQDILRLAAAEILFLGTPEQVAINEA 175
>sp|Q8GIR7|NUSB_SYNE7 N utilization substance protein B homolog OS=Synechococcus
elongatus (strain PCC 7942) GN=nusB PE=3 SV=1
Length = 213
Score = 31.6 bits (70), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 213 IDKVVPPIWKDQPAGRI--LELSILHLAMSEITVVGTRHQIVINEA 256
ID+ + + D R+ L+ IL LA +EI +GT Q+ INEA
Sbjct: 130 IDRTLNDVMVDWQLHRVPRLDQDILRLAAAEILFLGTPEQVAINEA 175
>sp|A7MWU1|NUSB_VIBHB N utilization substance protein B homolog OS=Vibrio harveyi (strain
ATCC BAA-1116 / BB120) GN=nusB PE=3 SV=1
Length = 155
Score = 31.2 bits (69), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 54/101 (53%), Gaps = 9/101 (8%)
Query: 157 TVEEADELLRSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKV 216
T+EE + L D+ + E E+ ++ P L + + + R+LL VV +H + K+
Sbjct: 33 TIEE--QFLSGDKYD---EEELHASEPALAAPETDVAYFRELLSGVVL---SHSELDSKI 84
Query: 217 VPPIWKDQPAGRILELSILHLAMSEIT-VVGTRHQIVINEA 256
P + + ++EL++L LAM E+T +++VINEA
Sbjct: 85 RPYVSRPMQDLDMMELALLRLAMYEMTRREDVPYKVVINEA 125
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.130 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,246,346
Number of Sequences: 539616
Number of extensions: 3414371
Number of successful extensions: 10362
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 10355
Number of HSP's gapped (non-prelim): 28
length of query: 273
length of database: 191,569,459
effective HSP length: 116
effective length of query: 157
effective length of database: 128,974,003
effective search space: 20248918471
effective search space used: 20248918471
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)