Query 024057
Match_columns 273
No_of_seqs 155 out of 280
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 17:27:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024057.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024057hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tzv_A NUSB protein, N utiliza 99.9 3E-25 1E-29 180.9 12.5 111 94-264 3-115 (142)
2 3r2d_A Protein NUSB, N utiliza 99.9 4.9E-25 1.7E-29 182.4 12.3 113 94-264 3-116 (149)
3 3d3b_A Protein NUSB, N utiliza 99.9 6.6E-25 2.2E-29 178.7 12.1 110 95-264 7-117 (141)
4 1eyv_A NUSB protein, N-utilizi 99.9 1.7E-24 6E-29 180.3 11.1 117 92-264 6-123 (156)
5 2yxl_A PH0851 protein, 450AA l 99.7 6.6E-17 2.3E-21 150.8 12.1 116 88-264 2-122 (450)
6 1sqg_A SUN protein, FMU protei 99.7 2.1E-16 7.3E-21 146.0 12.3 105 98-264 6-110 (429)
7 3r2d_A Protein NUSB, N utiliza 45.4 40 0.0014 27.2 5.7 71 156-235 7-83 (149)
8 1d7m_A Cortexillin I; coiled-c 34.2 5.6 0.00019 31.8 -1.0 36 208-244 50-95 (101)
9 1eyv_A NUSB protein, N-utilizi 34.2 63 0.0022 26.2 5.3 38 196-234 52-89 (156)
10 1tzv_A NUSB protein, N utiliza 26.0 55 0.0019 25.9 3.5 70 157-234 8-81 (142)
No 1
>1tzv_A NUSB protein, N utilization substance protein B homolog; RNA-protein interaction, transcriptional antitermination, transcription regulation; 1.35A {Thermotoga maritima} SCOP: a.79.1.1 PDB: 1tzu_A 1tzt_A 1tzw_A 1tzx_A*
Probab=99.92 E-value=3e-25 Score=180.90 Aligned_cols=111 Identities=14% Similarity=0.182 Sum_probs=96.2
Q ss_pred CChHHHHHHHHHHHHHHHhcCC-ChHHHHHHHhhcccCCCCcccchhhhhhcccCCCCCCcccccHHHHHHhhhhhhHHH
Q 024057 94 CSPRAARELALLVVYAACLEGS-DPIRLFEKRLNSRREPGYEFDKSSLLEYNHMSFGGPPVTTETVEEADELLRSDEEES 172 (273)
Q Consensus 94 ~srR~ARElALQvLYa~dl~g~-dp~~~~e~r~~~rre~~~~fd~~~l~~y~h~~~~g~p~~~~~~E~a~~L~~q~d~~s 172 (273)
-+||.||+.|+|+||+++..|. +...++...++ ...
T Consensus 3 ~~r~~aR~~A~~~L~~~~~~~~~~~~~~l~~~~~------~~l------------------------------------- 39 (142)
T 1tzv_A 3 TPRRRMRLAVFKALFQHEFRRDEDLEQILEEILD------ETY------------------------------------- 39 (142)
T ss_dssp CCHHHHHHHHHHHHHHHTTCTTSCHHHHHHHHCC------TTS-------------------------------------
T ss_pred CchHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH------hcC-------------------------------------
Confidence 3689999999999999999998 88777765221 000
Q ss_pred HHHHhhhcCCChhhhhHHHHHHHHHHHHHHHhcHHHHHHHHhhhcCCCCCCCCcchhhhHHHHHHHHhhhcc-cCCCccc
Q 024057 173 AIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKDQPAGRILELSILHLAMSEITV-VGTRHQI 251 (273)
Q Consensus 173 ~~ea~vl~apPklvyn~~~~~yareLV~GV~~~~de~d~~IDe~I~~~Wkl~Rm~rIVDr~ILRLAvYEml~-~DvP~kV 251 (273)
++.+..|+.+|+.||..++.++|..|++++ ++|+++||+. +|++|||||+|||+| +++|+.|
T Consensus 40 ---------------~~~d~~~~~~Lv~gvl~~~~~lD~~I~~~l-~~w~l~rl~~-~~r~iLrla~yEl~~~~~iP~~v 102 (142)
T 1tzv_A 40 ---------------DKKAKEDARRYIRGIKENLSMIDDLISRYL-EKWSLNRLSV-VDRNVLRLATYELLFEKDIPIEV 102 (142)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHTHHHHHHHHHTTC-SSSCGGGSCH-HHHHHHHHHHHHHHHCTTSCHHH
T ss_pred ---------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCChHHCCH-HHHHHHHHHHHHHHhcCCCCchh
Confidence 123679999999999999999999999998 5899999998 799999999999999 5899999
Q ss_pred hHhHHHHHHHHHh
Q 024057 252 VINEARLTLHFLF 264 (273)
Q Consensus 252 aINEAVELAK~f~ 264 (273)
+|||||||||+|+
T Consensus 103 aInEaVelaK~~~ 115 (142)
T 1tzv_A 103 TIDEAIEIAKRYG 115 (142)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHC
Confidence 9999999999985
No 2
>3r2d_A Protein NUSB, N utilization substance protein B; cross species NUSB-NUSE-RNA interaction; 2.20A {Aquifex aeolicus} PDB: 2jr0_A 3r2c_A* 4eya_A
Probab=99.92 E-value=4.9e-25 Score=182.44 Aligned_cols=113 Identities=24% Similarity=0.306 Sum_probs=95.8
Q ss_pred CChHHHHHHHHHHHHHHHhcCCChHHHHHHHhhcccCCCCcccchhhhhhcccCCCCCCcccccHHHHHHhhhhhhHHHH
Q 024057 94 CSPRAARELALLVVYAACLEGSDPIRLFEKRLNSRREPGYEFDKSSLLEYNHMSFGGPPVTTETVEEADELLRSDEEESA 173 (273)
Q Consensus 94 ~srR~ARElALQvLYa~dl~g~dp~~~~e~r~~~rre~~~~fd~~~l~~y~h~~~~g~p~~~~~~E~a~~L~~q~d~~s~ 173 (273)
.+||.||++|+|+||+++..|.++.+++++.++ . .
T Consensus 3 ~~R~~aR~~A~q~L~~~~~~~~~~~~~l~~~~~---~------~------------------------------------ 37 (149)
T 3r2d_A 3 RYRKGARDTAFLVLYRWDLRGENPGELFKEVVE---E------K------------------------------------ 37 (149)
T ss_dssp THHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH---H------H------------------------------------
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH---h------c------------------------------------
Confidence 368999999999999999999999988877443 0 0
Q ss_pred HHHhhhcCCChhhhhHHHHHHHHHHHHHHHhcHHHHHHHHhhhcCCCCCCCCcchhhhHHHHHHHHhhhcc-cCCCccch
Q 024057 174 IEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKDQPAGRILELSILHLAMSEITV-VGTRHQIV 252 (273)
Q Consensus 174 ~ea~vl~apPklvyn~~~~~yareLV~GV~~~~de~d~~IDe~I~~~Wkl~Rm~rIVDr~ILRLAvYEml~-~DvP~kVa 252 (273)
... +..+..|+.+|+.||+.++.++|..|++++ ++|+++||+. +|++|||||+|||+| +++|+.|+
T Consensus 38 ------~~~-----~~~dr~~~~~lv~gvl~~~~~lD~~i~~~l-~~w~~~rl~~-~~r~iLrla~yEl~~~~~iP~~va 104 (149)
T 3r2d_A 38 ------NIK-----NKDAYEYAKKLVDTAVRHIEEIDSIIEKHL-KGWSIDRLGY-VERNALRLGVAELIFLKSKEPGRV 104 (149)
T ss_dssp ------TCC-----CHHHHHHHHHHHHHHHHTHHHHHHHHHTTC----CGGGSCH-HHHHHHHHHHHHHTTSCCSCHHHH
T ss_pred ------ccC-----CHHHHHHHHHHHHHHHHhHHHHHHHHHHHh-cCCCccccCH-HHHHHHHHHHHHHHHcCCCCCeeh
Confidence 000 123679999999999999999999999998 7999999998 799999999999999 58999999
Q ss_pred HhHHHHHHHHHh
Q 024057 253 INEARLTLHFLF 264 (273)
Q Consensus 253 INEAVELAK~f~ 264 (273)
|||||||||+|+
T Consensus 105 InEaVelaK~~~ 116 (149)
T 3r2d_A 105 FIDIVDLVKKYA 116 (149)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHHhC
Confidence 999999999985
No 3
>3d3b_A Protein NUSB, N utilization substance protein B; NUSB, NUSE, NUT site, phage lambda, lambdan antitermina antitermination; HET: NHE; 1.30A {Escherichia coli} PDB: 3d3c_A 3imq_A 1ey1_A
Probab=99.92 E-value=6.6e-25 Score=178.74 Aligned_cols=110 Identities=21% Similarity=0.196 Sum_probs=94.7
Q ss_pred ChHHHHHHHHHHHHHHHhcCCChHHHHHHHhhcccCCCCcccchhhhhhcccCCCCCCcccccHHHHHHhhhhhhHHHHH
Q 024057 95 SPRAARELALLVVYAACLEGSDPIRLFEKRLNSRREPGYEFDKSSLLEYNHMSFGGPPVTTETVEEADELLRSDEEESAI 174 (273)
Q Consensus 95 srR~ARElALQvLYa~dl~g~dp~~~~e~r~~~rre~~~~fd~~~l~~y~h~~~~g~p~~~~~~E~a~~L~~q~d~~s~~ 174 (273)
+||.||++|+|+||++++.|.+..+++...++ + .
T Consensus 7 ~R~~aR~~A~~~L~~~~~~~~~~~~~~~~~~~---~----~--------------------------------------- 40 (141)
T 3d3b_A 7 ARRRARECAVQALYSWQLSQNDIADVEYQFLA---E----Q--------------------------------------- 40 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH---H----S---------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHccCCCHHHHHHHHHH---h----c---------------------------------------
Confidence 68999999999999999999888887755332 0 0
Q ss_pred HHhhhcCCChhhhhHHHHHHHHHHHHHHHhcHHHHHHHHhhhcCCCCCCCCcchhhhHHHHHHHHhhhcc-cCCCccchH
Q 024057 175 EAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKDQPAGRILELSILHLAMSEITV-VGTRHQIVI 253 (273)
Q Consensus 175 ea~vl~apPklvyn~~~~~yareLV~GV~~~~de~d~~IDe~I~~~Wkl~Rm~rIVDr~ILRLAvYEml~-~DvP~kVaI 253 (273)
..+ +.+..|+.+|+.||+.++.++|..|++++. |+++||+. +|++|||||+|||+| +++|+.|+|
T Consensus 41 -----~l~------~~d~~~~~~Lv~gvl~~~~~lD~~I~~~l~--~~l~rl~~-~~r~iLrla~yEll~~~~iP~~vaI 106 (141)
T 3d3b_A 41 -----DVK------DVDVLYFRELLAGVATNTAYLDGLMKPYLS--RLLEELGQ-VEKAVLRIALYELSKRSDVPYKVAI 106 (141)
T ss_dssp -----CCT------TSCHHHHHHHHHHHHHTHHHHHHHHGGGGT--TCSSCCCH-HHHHHHHHHHHHHHHCTTSCHHHHH
T ss_pred -----cCC------HHHHHHHHHHHHHHHHhHHHHHHHHHHHcC--CCHHHcCH-HHHHHHHHHHHHHHhCCCCCchhhH
Confidence 000 114689999999999999999999999983 99999998 799999999999999 589999999
Q ss_pred hHHHHHHHHHh
Q 024057 254 NEARLTLHFLF 264 (273)
Q Consensus 254 NEAVELAK~f~ 264 (273)
||||||||+|+
T Consensus 107 nEaVelaK~~~ 117 (141)
T 3d3b_A 107 NEAIELAKSFG 117 (141)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHHC
Confidence 99999999985
No 4
>1eyv_A NUSB protein, N-utilizing substance protein B homolog; helical bundle, structural genomics, PSI, protein structure initiative; 1.60A {Mycobacterium tuberculosis} SCOP: a.79.1.1
Probab=99.91 E-value=1.7e-24 Score=180.33 Aligned_cols=117 Identities=16% Similarity=0.190 Sum_probs=95.3
Q ss_pred CCCChHHHHHHHHHHHHHHHhcCCChHHHHHHHhhcccCCCCcccchhhhhhcccCCCCCCcccccHHHHHHhhhhhhHH
Q 024057 92 RFCSPRAARELALLVVYAACLEGSDPIRLFEKRLNSRREPGYEFDKSSLLEYNHMSFGGPPVTTETVEEADELLRSDEEE 171 (273)
Q Consensus 92 Rf~srR~ARElALQvLYa~dl~g~dp~~~~e~r~~~rre~~~~fd~~~l~~y~h~~~~g~p~~~~~~E~a~~L~~q~d~~ 171 (273)
+..+||.||++|+|+||+++..|.+..+++..... +... +.
T Consensus 6 ~~~~R~~aR~~Alq~L~~~~~~~~~~~~~l~~~~~-------------------------------------l~~~-d~- 46 (156)
T 1eyv_A 6 PVRGRHQARKRAVALLFEAEVRGISAAEVVDTRAA-------------------------------------LAEA-KP- 46 (156)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHH-------------------------------------HHHH-CT-
T ss_pred CccchHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh-------------------------------------cccc-cc-
Confidence 34689999999999999999999888777654211 0000 00
Q ss_pred HHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHhcHHHHHHHHhhhcCCCCCCCCcchhhhHHHHHHHHhhhcc-cCCCcc
Q 024057 172 SAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKDQPAGRILELSILHLAMSEITV-VGTRHQ 250 (273)
Q Consensus 172 s~~ea~vl~apPklvyn~~~~~yareLV~GV~~~~de~d~~IDe~I~~~Wkl~Rm~rIVDr~ILRLAvYEml~-~DvP~k 250 (273)
..+ .+..|+.+|+.||+.++.++|..|++++ ++|+++||+. +|++|||||+|||+| +++|+.
T Consensus 47 ---------~~~------~~~~~~~~lv~gvl~~~~~lD~~i~~~l-~~w~l~rl~~-~~r~iLrla~yel~~~~~iP~~ 109 (156)
T 1eyv_A 47 ---------DIA------RLHPYTAAVARGVSEHAAHIDDLITAHL-RGWTLDRLPA-VDRAILRVSVWELLHAADVPEP 109 (156)
T ss_dssp ---------TSC------CCCHHHHHHHHHHHHTHHHHHHHHHTTS-TTCCGGGSCH-HHHHHHHHHHHHHHHCTTSCHH
T ss_pred ---------ccH------HHHHHHHHHHHHHHHhHHHHHHHHHHHh-cCCChhhCCH-HHHHHHHHHHHHHHHcCCCCch
Confidence 011 1358999999999999999999999998 7999999998 799999999999999 579999
Q ss_pred chHhHHHHHHHHHh
Q 024057 251 IVINEARLTLHFLF 264 (273)
Q Consensus 251 VaINEAVELAK~f~ 264 (273)
|+|||||||||+|+
T Consensus 110 v~InEaVelak~~~ 123 (156)
T 1eyv_A 110 VVVDEAVQLAKELS 123 (156)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHhC
Confidence 99999999999985
No 5
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=99.70 E-value=6.6e-17 Score=150.83 Aligned_cols=116 Identities=9% Similarity=-0.024 Sum_probs=95.9
Q ss_pred cccCCCCChHHHHHHHHHHHHHHHhcCCChHHHHHHHhhcccCCCCcccchhhhhhcccCCCCCCcccccHHHHHHhhhh
Q 024057 88 DKSGRFCSPRAARELALLVVYAACLEGSDPIRLFEKRLNSRREPGYEFDKSSLLEYNHMSFGGPPVTTETVEEADELLRS 167 (273)
Q Consensus 88 dk~gRf~srR~ARElALQvLYa~dl~g~dp~~~~e~r~~~rre~~~~fd~~~l~~y~h~~~~g~p~~~~~~E~a~~L~~q 167 (273)
++..|+++++.||+.|+|+||+++..|.....++.+.++..+ +
T Consensus 2 ~~~~~~~~~~~~R~~A~~~L~~v~~~~~~~~~~l~~~~~~~~-----l-------------------------------- 44 (450)
T 2yxl_A 2 EAEKKKLSIPPKGIRAIIEAIRLGEIIKPSQYAKREAFKKHD-----V-------------------------------- 44 (450)
T ss_dssp ----CCBCCCHHHHHHHHHHHHHTTTSSSTHHHHHHHHHHTT-----C--------------------------------
T ss_pred cccccccCcchHHHHHHHHHHHHHhcCCcHHHHHHHHHHhcc-----C--------------------------------
Confidence 456799999999999999999999999777777766543100 0
Q ss_pred hhHHHHHHHhhhcCCChhhhhH-HHHHHHHHHHHHHHhcHHHHHHHHhhhcCCCCCCCCcchhhhHHHHHHHHhhhcccC
Q 024057 168 DEEESAIEAEVLSAPPKLVYSK-LLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKDQPAGRILELSILHLAMSEITVVG 246 (273)
Q Consensus 168 ~d~~s~~ea~vl~apPklvyn~-~~~~yareLV~GV~~~~de~d~~IDe~I~~~Wkl~Rm~rIVDr~ILRLAvYEml~~D 246 (273)
+. .+..|+.+||.||+.++..+|..|++.+. + ++++|+. ++++|||||+|||+| +
T Consensus 45 --------------------~~~~dr~~~~~lv~gvlr~~~~ld~~i~~~~~-~-~~~~~~~-~~~~iLrla~yell~-~ 100 (450)
T 2yxl_A 45 --------------------EEAWLNRVLTMIFYDIMKKQGLIDKVIKEIVG-V-TPLILDP-WLRAALRVAVDIALF-H 100 (450)
T ss_dssp --------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-S-CGGGSCH-HHHHHHHHHHHHHHH-S
T ss_pred --------------------CcHHHHHHHHHHHHHHHHhHHHHHHHHHHhcc-C-ChhhcCH-HHHHHHHHHHHHHhc-C
Confidence 01 36899999999999999999999999874 3 7778888 799999999999999 9
Q ss_pred CCccchHh----HHHHHHHHHh
Q 024057 247 TRHQIVIN----EARLTLHFLF 264 (273)
Q Consensus 247 vP~kVaIN----EAVELAK~f~ 264 (273)
+|..|+|| |||||||+|+
T Consensus 101 ip~~~ain~~~~eaVelak~~~ 122 (450)
T 2yxl_A 101 DPSSQTIKNLRWKASDFISSRT 122 (450)
T ss_dssp CBCHHHHHHHHHHHHHHHHHHS
T ss_pred CCchHHhccccHHHHHHHHhcc
Confidence 99999999 9999999984
No 6
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=99.68 E-value=2.1e-16 Score=146.02 Aligned_cols=105 Identities=10% Similarity=0.053 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHhhcccCCCCcccchhhhhhcccCCCCCCcccccHHHHHHhhhhhhHHHHHHHh
Q 024057 98 AARELALLVVYAACLEGSDPIRLFEKRLNSRREPGYEFDKSSLLEYNHMSFGGPPVTTETVEEADELLRSDEEESAIEAE 177 (273)
Q Consensus 98 ~ARElALQvLYa~dl~g~dp~~~~e~r~~~rre~~~~fd~~~l~~y~h~~~~g~p~~~~~~E~a~~L~~q~d~~s~~ea~ 177 (273)
.||+.|+|+||+++..|.+..+++.+... . .
T Consensus 6 ~aR~~A~~~L~~~~~~~~~~~~~l~~~~~---~----~------------------------------------------ 36 (429)
T 1sqg_A 6 NLRSMAAQAVEQVVEQGQSLSNILPPLQQ---K----V------------------------------------------ 36 (429)
T ss_dssp CHHHHHHHHHHHHHHHCCCHHHHHHHHHT---T----S------------------------------------------
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHh---h----C------------------------------------------
Confidence 59999999999999999888777654211 0 0
Q ss_pred hhcCCChhhhhHHHHHHHHHHHHHHHhcHHHHHHHHhhhcCCCCCCCCcchhhhHHHHHHHHhhhcccCCCccchHhHHH
Q 024057 178 VLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKDQPAGRILELSILHLAMSEITVVGTRHQIVINEAR 257 (273)
Q Consensus 178 vl~apPklvyn~~~~~yareLV~GV~~~~de~d~~IDe~I~~~Wkl~Rm~rIVDr~ILRLAvYEml~~DvP~kVaINEAV 257 (273)
+..+..|+.+||.||+.++..+|..|++.+. + ++++++. ++++|||||+|||+|.++|..|+|||||
T Consensus 37 ----------~~~dr~~~~~lv~gvlr~~~~ld~~i~~~~~-~-~~~~~~~-~~~~iLrl~~yel~~~~~p~~~~ineaV 103 (429)
T 1sqg_A 37 ----------SDKDKALLQELCFGVLRTLSQLDWLINKLMA-R-PMTGKQR-TVHYLIMVGLYQLLYTRIPPHAALAETV 103 (429)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS-S-CCCGGGH-HHHHHHHHHHHHHHHCCSCHHHHHHHHH
T ss_pred ----------CHHHHHHHHHHHHHHHHhHHHHHHHHHHhcC-C-ChhhcCH-HHHHHHHHHHHHHhhCCCCchHhhHHHH
Confidence 1236899999999999999999999999874 4 7778988 7999999999999998999999999999
Q ss_pred HHHHHHh
Q 024057 258 LTLHFLF 264 (273)
Q Consensus 258 ELAK~f~ 264 (273)
||||+|+
T Consensus 104 elak~~~ 110 (429)
T 1sqg_A 104 EGAIAIK 110 (429)
T ss_dssp HHHHHTT
T ss_pred HHHHHhc
Confidence 9999875
No 7
>3r2d_A Protein NUSB, N utilization substance protein B; cross species NUSB-NUSE-RNA interaction; 2.20A {Aquifex aeolicus} PDB: 2jr0_A 3r2c_A* 4eya_A
Probab=45.36 E-value=40 Score=27.18 Aligned_cols=71 Identities=15% Similarity=0.117 Sum_probs=47.0
Q ss_pred ccHHHHHHhhhhhhHHHHHHHhhhcCCChhhhhHHHH------HHHHHHHHHHHhcHHHHHHHHhhhcCCCCCCCCcchh
Q 024057 156 ETVEEADELLRSDEEESAIEAEVLSAPPKLVYSKLLL------RFTRKLLVAVVDKWDAHVHIIDKVVPPIWKDQPAGRI 229 (273)
Q Consensus 156 ~~~E~a~~L~~q~d~~s~~ea~vl~apPklvyn~~~~------~yareLV~GV~~~~de~d~~IDe~I~~~Wkl~Rm~rI 229 (273)
..|+.|.++++|-+.+. ..+....+++.. .--+.++..++.+..++...||.+|.+..+.|++.+
T Consensus 7 ~aR~~A~q~L~~~~~~~--------~~~~~~l~~~~~~~~~~~~~dr~~~~~lv~gvl~~~~~lD~~i~~~l~~w~~~r- 77 (149)
T 3r2d_A 7 GARDTAFLVLYRWDLRG--------ENPGELFKEVVEEKNIKNKDAYEYAKKLVDTAVRHIEEIDSIIEKHLKGWSIDR- 77 (149)
T ss_dssp HHHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHTHHHHHHHHHTTC---CGGG-
T ss_pred HHHHHHHHHHHHHHhcC--------CCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCccc-
Confidence 45788999998877631 122222221111 123568899999999999999999999999999998
Q ss_pred hhHHHH
Q 024057 230 LELSIL 235 (273)
Q Consensus 230 VDr~IL 235 (273)
++..+.
T Consensus 78 l~~~~r 83 (149)
T 3r2d_A 78 LGYVER 83 (149)
T ss_dssp SCHHHH
T ss_pred cCHHHH
Confidence 776443
No 8
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=34.22 E-value=5.6 Score=31.81 Aligned_cols=36 Identities=17% Similarity=0.180 Sum_probs=26.8
Q ss_pred HHHHHHhhhcCCCCCCCCcchh----------hhHHHHHHHHhhhcc
Q 024057 208 AHVHIIDKVVPPIWKDQPAGRI----------LELSILHLAMSEITV 244 (273)
Q Consensus 208 e~d~~IDe~I~~~Wkl~Rm~rI----------VDr~ILRLAvYEml~ 244 (273)
++...||..+ .|..+++|+++ -|++||-|.+.|++.
T Consensus 50 el~akidd~L-k~l~~EklAkldLE~RLsKtEKDkAiLELkLaE~~D 95 (101)
T 1d7m_A 50 ELEAKLDETL-KNLELEKLARMELEARLAKTEKDRAILELKLAEAID 95 (101)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhh
Confidence 4556667766 57777777765 489999999999873
No 9
>1eyv_A NUSB protein, N-utilizing substance protein B homolog; helical bundle, structural genomics, PSI, protein structure initiative; 1.60A {Mycobacterium tuberculosis} SCOP: a.79.1.1
Probab=34.16 E-value=63 Score=26.22 Aligned_cols=38 Identities=18% Similarity=0.153 Sum_probs=33.8
Q ss_pred HHHHHHHHhcHHHHHHHHhhhcCCCCCCCCcchhhhHHH
Q 024057 196 RKLLVAVVDKWDAHVHIIDKVVPPIWKDQPAGRILELSI 234 (273)
Q Consensus 196 reLV~GV~~~~de~d~~IDe~I~~~Wkl~Rm~rIVDr~I 234 (273)
+.++..++.+..++...||.+|.+..+.|++.+ ++..+
T Consensus 52 ~~~~~~lv~gvl~~~~~lD~~i~~~l~~w~l~r-l~~~~ 89 (156)
T 1eyv_A 52 HPYTAAVARGVSEHAAHIDDLITAHLRGWTLDR-LPAVD 89 (156)
T ss_dssp CHHHHHHHHHHHHTHHHHHHHHHTTSTTCCGGG-SCHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhcCCChhh-CCHHH
Confidence 578999999999999999999999999999998 77633
No 10
>1tzv_A NUSB protein, N utilization substance protein B homolog; RNA-protein interaction, transcriptional antitermination, transcription regulation; 1.35A {Thermotoga maritima} SCOP: a.79.1.1 PDB: 1tzu_A 1tzt_A 1tzw_A 1tzx_A*
Probab=26.01 E-value=55 Score=25.86 Aligned_cols=70 Identities=9% Similarity=0.043 Sum_probs=47.8
Q ss_pred cHHHHHHhhhhhhHHHHHHHhhhcCCChhhhhHH----HHHHHHHHHHHHHhcHHHHHHHHhhhcCCCCCCCCcchhhhH
Q 024057 157 TVEEADELLRSDEEESAIEAEVLSAPPKLVYSKL----LLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKDQPAGRILEL 232 (273)
Q Consensus 157 ~~E~a~~L~~q~d~~s~~ea~vl~apPklvyn~~----~~~yareLV~GV~~~~de~d~~IDe~I~~~Wkl~Rm~rIVDr 232 (273)
.|+.|.+++++-+.+.. .......+.. ...--+.++..++.+..++...||.+|.+..+.|++.+ ++.
T Consensus 8 aR~~A~~~L~~~~~~~~-------~~~~~~l~~~~~~~l~~~d~~~~~~Lv~gvl~~~~~lD~~I~~~l~~w~l~r-l~~ 79 (142)
T 1tzv_A 8 MRLAVFKALFQHEFRRD-------EDLEQILEEILDETYDKKAKEDARRYIRGIKENLSMIDDLISRYLEKWSLNR-LSV 79 (142)
T ss_dssp HHHHHHHHHHHHTTCTT-------SCHHHHHHHHCCTTSCHHHHHHHHHHHHHHHHTHHHHHHHHHTTCSSSCGGG-SCH
T ss_pred HHHHHHHHHHHHHhcCC-------CCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHH-CCH
Confidence 57888888877665211 0111111110 01233678999999999999999999999999999998 876
Q ss_pred HH
Q 024057 233 SI 234 (273)
Q Consensus 233 ~I 234 (273)
.+
T Consensus 80 ~~ 81 (142)
T 1tzv_A 80 VD 81 (142)
T ss_dssp HH
T ss_pred HH
Confidence 43
Done!