Query 024060
Match_columns 273
No_of_seqs 218 out of 1660
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 17:30:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024060.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024060hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3n0v_A Formyltetrahydrofolate 100.0 5.7E-56 2E-60 409.2 31.0 233 1-273 49-286 (286)
2 3o1l_A Formyltetrahydrofolate 100.0 4.4E-56 1.5E-60 412.7 29.5 234 1-273 63-301 (302)
3 3lou_A Formyltetrahydrofolate 100.0 7.4E-56 2.5E-60 409.6 29.9 234 1-273 51-291 (292)
4 3obi_A Formyltetrahydrofolate 100.0 6.8E-56 2.3E-60 409.1 26.7 235 1-273 47-286 (288)
5 3nrb_A Formyltetrahydrofolate 100.0 5.8E-56 2E-60 409.4 24.8 233 1-273 48-285 (287)
6 3kcq_A Phosphoribosylglycinami 100.0 3.9E-50 1.3E-54 356.8 25.7 196 43-272 5-202 (215)
7 3tqr_A Phosphoribosylglycinami 100.0 1.1E-49 3.9E-54 353.9 26.2 193 45-272 4-202 (215)
8 1jkx_A GART;, phosphoribosylgl 100.0 2.5E-49 8.4E-54 350.8 25.9 193 47-273 1-199 (212)
9 3p9x_A Phosphoribosylglycinami 100.0 1.8E-49 6.3E-54 351.6 24.0 187 46-265 2-194 (211)
10 1meo_A Phosophoribosylglycinam 100.0 4.4E-49 1.5E-53 348.5 26.2 192 47-271 1-198 (209)
11 4ds3_A Phosphoribosylglycinami 100.0 3.9E-49 1.3E-53 349.1 24.8 192 46-271 7-207 (209)
12 3da8_A Probable 5'-phosphoribo 100.0 7.4E-49 2.5E-53 348.6 26.4 193 43-271 9-207 (215)
13 3auf_A Glycinamide ribonucleot 100.0 1.6E-48 5.4E-53 349.4 26.2 200 40-273 16-221 (229)
14 2ywr_A Phosphoribosylglycinami 100.0 5.1E-48 1.7E-52 342.9 26.0 193 46-272 1-199 (216)
15 3av3_A Phosphoribosylglycinami 100.0 3.3E-47 1.1E-51 336.9 24.6 186 46-264 3-194 (212)
16 1fmt_A Methionyl-tRNA FMet for 100.0 6E-43 2.1E-47 326.0 24.0 185 45-268 2-197 (314)
17 2bln_A Protein YFBG; transfera 100.0 6.3E-43 2.2E-47 324.6 21.3 183 47-268 1-191 (305)
18 3tqq_A Methionyl-tRNA formyltr 100.0 9.5E-42 3.2E-46 318.0 24.3 184 46-268 2-196 (314)
19 3q0i_A Methionyl-tRNA formyltr 100.0 5.4E-42 1.8E-46 320.2 21.6 184 46-268 7-201 (318)
20 3rfo_A Methionyl-tRNA formyltr 100.0 1.1E-41 3.9E-46 317.9 23.1 186 44-268 2-198 (317)
21 2bw0_A 10-FTHFDH, 10-formyltet 100.0 2.2E-40 7.6E-45 310.5 20.5 186 46-267 22-215 (329)
22 1z7e_A Protein aRNA; rossmann 100.0 4.3E-40 1.5E-44 329.8 22.1 183 47-268 1-191 (660)
23 1zgh_A Methionyl-tRNA formyltr 100.0 2.2E-30 7.6E-35 235.7 10.5 114 115-266 68-184 (260)
24 2i6u_A Otcase, ornithine carba 94.9 0.21 7.2E-06 45.9 11.1 120 46-191 148-271 (307)
25 4gmf_A Yersiniabactin biosynth 94.8 0.027 9.3E-07 52.8 5.0 55 42-103 3-57 (372)
26 1vlv_A Otcase, ornithine carba 93.6 0.29 1E-05 45.3 9.3 120 46-191 167-291 (325)
27 1pvv_A Otcase, ornithine carba 93.6 0.3 1E-05 45.0 9.3 119 46-191 155-277 (315)
28 3gd5_A Otcase, ornithine carba 93.0 0.54 1.9E-05 43.5 10.1 119 45-190 156-278 (323)
29 4ep1_A Otcase, ornithine carba 92.5 0.57 1.9E-05 43.7 9.5 118 45-190 178-299 (340)
30 3tpf_A Otcase, ornithine carba 92.2 0.5 1.7E-05 43.4 8.6 118 46-190 146-267 (307)
31 3grf_A Ornithine carbamoyltran 91.0 0.62 2.1E-05 43.2 8.0 120 46-190 161-288 (328)
32 3p96_A Phosphoserine phosphata 90.9 0.85 2.9E-05 42.3 8.9 80 1-81 51-137 (415)
33 1dxh_A Ornithine carbamoyltran 90.6 0.58 2E-05 43.5 7.3 116 47-188 156-277 (335)
34 1duv_G Octase-1, ornithine tra 90.5 0.59 2E-05 43.4 7.4 117 46-188 155-277 (333)
35 3rjz_A N-type ATP pyrophosphat 89.1 1.7 5.7E-05 38.4 8.8 79 46-127 4-95 (237)
36 4amu_A Ornithine carbamoyltran 89.0 0.69 2.3E-05 43.5 6.5 119 46-189 180-304 (365)
37 3csu_A Protein (aspartate carb 88.9 1.3 4.5E-05 40.7 8.3 113 46-184 154-268 (310)
38 4had_A Probable oxidoreductase 88.8 0.75 2.6E-05 41.5 6.5 70 43-130 20-94 (350)
39 2w37_A Ornithine carbamoyltran 88.6 0.9 3.1E-05 42.7 7.0 116 46-188 176-298 (359)
40 1zq6_A Otcase, ornithine carba 88.5 3.3 0.00011 38.7 10.9 77 93-190 244-320 (359)
41 1ml4_A Aspartate transcarbamoy 87.7 2.8 9.4E-05 38.4 9.6 113 46-184 155-269 (308)
42 2ef0_A Ornithine carbamoyltran 87.6 1.7 5.8E-05 39.7 8.1 59 118-191 209-267 (301)
43 4a8t_A Putrescine carbamoyltra 87.3 1.4 4.9E-05 40.9 7.5 119 46-191 175-298 (339)
44 4f2g_A Otcase 1, ornithine car 87.2 0.74 2.5E-05 42.3 5.4 60 116-190 210-269 (309)
45 4fb5_A Probable oxidoreductase 86.0 1.3 4.6E-05 39.9 6.5 71 46-130 25-102 (393)
46 3ip3_A Oxidoreductase, putativ 86.0 1.6 5.3E-05 39.4 6.9 74 46-130 2-75 (337)
47 4a8p_A Putrescine carbamoyltra 85.0 1.8 6.3E-05 40.5 7.0 119 46-191 153-276 (355)
48 4ekn_B Aspartate carbamoyltran 84.6 2 6.7E-05 39.4 6.9 113 45-184 150-264 (306)
49 3sds_A Ornithine carbamoyltran 83.3 6.3 0.00022 36.8 9.8 118 45-189 187-312 (353)
50 1oth_A Protein (ornithine tran 82.6 6.6 0.00023 36.1 9.6 116 46-188 155-274 (321)
51 4gqa_A NAD binding oxidoreduct 80.9 2.1 7.3E-05 39.5 5.7 75 43-130 23-104 (412)
52 3kzn_A Aotcase, N-acetylornith 80.8 7.8 0.00027 36.0 9.5 61 117-191 260-321 (359)
53 3rc1_A Sugar 3-ketoreductase; 80.7 1.9 6.4E-05 39.2 5.2 67 45-130 26-97 (350)
54 3ohs_X Trans-1,2-dihydrobenzen 80.1 2.5 8.5E-05 37.9 5.7 70 46-130 2-74 (334)
55 3q2i_A Dehydrogenase; rossmann 79.9 3 0.0001 37.7 6.3 69 44-130 11-83 (354)
56 3mz0_A Inositol 2-dehydrogenas 78.6 5.3 0.00018 35.9 7.5 70 46-130 2-74 (344)
57 3e9m_A Oxidoreductase, GFO/IDH 77.0 3.2 0.00011 37.2 5.5 68 45-130 4-75 (330)
58 2w6k_A COBE; biosynthetic prot 76.9 7.3 0.00025 31.7 7.1 66 41-106 5-75 (145)
59 3evn_A Oxidoreductase, GFO/IDH 76.5 3 0.0001 37.3 5.1 68 45-130 4-75 (329)
60 3fwz_A Inner membrane protein 75.6 6.1 0.00021 30.7 6.1 72 43-129 4-78 (140)
61 3uuw_A Putative oxidoreductase 75.5 2.5 8.6E-05 37.4 4.3 68 46-130 6-74 (308)
62 3u3x_A Oxidoreductase; structu 75.2 7.8 0.00027 35.3 7.6 69 46-130 26-96 (361)
63 3moi_A Probable dehydrogenase; 74.9 3.2 0.00011 38.2 5.0 68 46-130 2-72 (387)
64 3euw_A MYO-inositol dehydrogen 74.8 3.2 0.00011 37.3 4.8 67 45-130 3-73 (344)
65 3db2_A Putative NADPH-dependen 74.2 3.4 0.00012 37.3 4.9 69 45-130 4-74 (354)
66 4h3v_A Oxidoreductase domain p 73.9 3.5 0.00012 37.0 4.9 72 46-130 6-83 (390)
67 1r0k_A 1-deoxy-D-xylulose 5-ph 73.6 11 0.00037 35.6 8.3 55 46-106 4-60 (388)
68 2nvw_A Galactose/lactose metab 73.6 8.2 0.00028 36.9 7.6 53 45-101 38-92 (479)
69 4hkt_A Inositol 2-dehydrogenas 73.6 4.6 0.00016 36.0 5.6 65 46-130 3-71 (331)
70 1zh8_A Oxidoreductase; TM0312, 73.6 6.9 0.00023 35.2 6.8 71 43-130 15-90 (340)
71 3dty_A Oxidoreductase, GFO/IDH 73.4 6.4 0.00022 36.2 6.6 72 45-130 11-93 (398)
72 3cea_A MYO-inositol 2-dehydrog 73.3 11 0.00036 33.6 7.9 70 44-130 6-79 (346)
73 3a06_A 1-deoxy-D-xylulose 5-ph 72.3 9.9 0.00034 35.8 7.6 76 47-129 4-92 (376)
74 4huj_A Uncharacterized protein 72.0 7.3 0.00025 32.8 6.2 67 45-130 22-89 (220)
75 1ydw_A AX110P-like protein; st 71.9 8.3 0.00028 34.8 6.9 69 45-130 5-79 (362)
76 3ezy_A Dehydrogenase; structur 71.6 7.5 0.00025 34.9 6.5 69 46-130 2-72 (344)
77 1ni5_A Putative cell cycle pro 71.4 12 0.0004 35.4 8.1 62 45-106 12-80 (433)
78 3r7f_A Aspartate carbamoyltran 70.4 10 0.00035 34.6 7.1 116 57-190 126-255 (304)
79 1pg5_A Aspartate carbamoyltran 69.3 29 0.00099 31.4 9.9 111 46-184 149-261 (299)
80 2p2s_A Putative oxidoreductase 69.2 10 0.00036 33.7 6.9 68 46-130 4-74 (336)
81 3rh0_A Arsenate reductase; oxi 69.0 9.6 0.00033 30.9 6.0 84 40-130 14-100 (148)
82 4h31_A Otcase, ornithine carba 68.0 16 0.00055 33.9 8.1 60 117-190 245-305 (358)
83 3v5n_A Oxidoreductase; structu 67.6 4.7 0.00016 37.6 4.4 73 45-131 36-119 (417)
84 2ho3_A Oxidoreductase, GFO/IDH 66.5 7.8 0.00027 34.4 5.4 67 46-130 1-70 (325)
85 1tlt_A Putative oxidoreductase 66.3 12 0.0004 33.1 6.5 47 46-101 5-54 (319)
86 3btv_A Galactose/lactose metab 66.0 8.9 0.0003 36.0 6.0 49 45-101 19-73 (438)
87 1nvm_B Acetaldehyde dehydrogen 65.0 16 0.00056 32.9 7.3 74 45-130 3-79 (312)
88 2cwd_A Low molecular weight ph 64.4 17 0.0006 29.4 6.8 81 45-131 3-92 (161)
89 3ec7_A Putative dehydrogenase; 63.3 29 0.001 31.3 8.8 70 45-130 22-95 (357)
90 1zpv_A ACT domain protein; str 63.1 9.3 0.00032 27.2 4.4 30 2-32 45-74 (91)
91 3e18_A Oxidoreductase; dehydro 62.8 7.9 0.00027 35.1 4.8 68 45-130 4-73 (359)
92 1js1_X Transcarbamylase; alpha 61.0 24 0.00083 32.4 7.7 115 56-191 145-281 (324)
93 1u8s_A Glycine cleavage system 59.4 27 0.00091 28.7 7.1 28 2-31 46-73 (192)
94 3llv_A Exopolyphosphatase-rela 57.8 19 0.00063 27.5 5.6 69 46-129 6-77 (141)
95 4etn_A LMPTP, low molecular we 57.8 15 0.00051 30.9 5.3 79 45-130 33-118 (184)
96 3q98_A Transcarbamylase; rossm 57.7 70 0.0024 30.1 10.5 129 46-188 191-337 (399)
97 3d6n_B Aspartate carbamoyltran 56.7 15 0.00053 33.2 5.5 117 57-191 125-257 (291)
98 1wy5_A TILS, hypothetical UPF0 56.6 18 0.00061 32.4 6.0 61 45-106 23-91 (317)
99 3abi_A Putative uncharacterize 56.2 15 0.00051 33.4 5.4 71 44-130 14-85 (365)
100 3l4b_C TRKA K+ channel protien 55.2 15 0.00051 30.5 4.9 69 47-129 1-72 (218)
101 3o9z_A Lipopolysaccaride biosy 54.9 21 0.00072 31.7 6.1 33 45-83 2-37 (312)
102 3k32_A Uncharacterized protein 54.2 27 0.00091 29.1 6.3 57 46-107 6-65 (203)
103 3jtm_A Formate dehydrogenase, 53.7 51 0.0017 30.3 8.7 163 46-262 164-333 (351)
104 1lss_A TRK system potassium up 53.7 31 0.0011 25.5 6.2 71 46-129 4-76 (140)
105 3ggo_A Prephenate dehydrogenas 52.7 34 0.0012 30.5 7.2 123 46-190 33-159 (314)
106 2wmy_A WZB, putative acid phos 52.4 31 0.0011 27.5 6.3 80 46-131 8-90 (150)
107 2nac_A NAD-dependent formate d 52.4 45 0.0015 31.2 8.2 161 46-262 191-360 (393)
108 1u2p_A Ptpase, low molecular w 52.3 37 0.0013 27.4 6.7 81 45-132 3-92 (163)
109 2der_A TRNA-specific 2-thiouri 52.1 24 0.00083 32.8 6.3 58 45-107 16-86 (380)
110 1p8a_A Protein tyrosine phosph 51.3 27 0.00094 27.7 5.7 81 46-131 4-88 (146)
111 3ic5_A Putative saccharopine d 50.9 64 0.0022 22.9 7.9 72 45-130 4-77 (118)
112 3loq_A Universal stress protei 49.9 67 0.0023 27.4 8.4 116 44-183 168-291 (294)
113 3tri_A Pyrroline-5-carboxylate 49.8 18 0.00062 31.7 4.8 67 46-130 3-71 (280)
114 3nbm_A PTS system, lactose-spe 49.8 15 0.00052 28.2 3.8 64 43-106 3-85 (108)
115 3v7e_A Ribosome-associated pro 49.7 11 0.00039 27.3 2.9 27 89-120 43-69 (82)
116 2fek_A Low molecular weight pr 49.6 35 0.0012 28.0 6.2 80 46-131 22-104 (167)
117 3oj0_A Glutr, glutamyl-tRNA re 49.1 28 0.00096 26.8 5.3 68 46-130 21-88 (144)
118 2ahr_A Putative pyrroline carb 48.8 14 0.00049 31.3 3.9 66 45-130 2-68 (259)
119 3m2t_A Probable dehydrogenase; 48.2 12 0.00041 33.9 3.4 46 46-100 5-53 (359)
120 3bio_A Oxidoreductase, GFO/IDH 48.2 10 0.00034 33.9 2.8 33 46-82 9-42 (304)
121 2hma_A Probable tRNA (5-methyl 48.0 27 0.00093 32.3 5.9 57 45-106 8-77 (376)
122 3qhp_A Type 1 capsular polysac 47.5 89 0.003 23.6 8.7 80 47-131 3-83 (166)
123 3tnj_A Universal stress protei 47.1 43 0.0015 25.2 6.1 41 91-133 76-120 (150)
124 2g1u_A Hypothetical protein TM 46.7 12 0.00041 29.3 2.8 75 42-130 15-92 (155)
125 3l9w_A Glutathione-regulated p 46.7 27 0.00091 32.7 5.6 51 45-106 3-54 (413)
126 4hy3_A Phosphoglycerate oxidor 46.3 1E+02 0.0035 28.4 9.5 164 46-264 176-344 (365)
127 3a2k_A TRNA(Ile)-lysidine synt 46.0 21 0.00072 33.9 4.9 61 45-106 17-85 (464)
128 1k92_A Argininosuccinate synth 45.9 46 0.0016 31.9 7.2 59 43-106 7-71 (455)
129 3oqb_A Oxidoreductase; structu 45.9 41 0.0014 30.3 6.7 70 45-131 5-92 (383)
130 1d1q_A Tyrosine phosphatase (E 45.5 39 0.0013 27.2 5.9 81 45-131 6-96 (161)
131 2yfk_A Aspartate/ornithine car 45.2 1E+02 0.0035 29.2 9.4 130 46-190 188-337 (418)
132 1q0q_A 1-deoxy-D-xylulose 5-ph 44.6 66 0.0023 30.5 7.9 58 43-106 6-65 (406)
133 4g65_A TRK system potassium up 43.7 25 0.00086 33.3 5.0 71 45-129 2-75 (461)
134 2d0i_A Dehydrogenase; structur 43.7 1.7E+02 0.0056 26.3 10.4 159 46-261 146-311 (333)
135 3rsc_A CALG2; TDP, enediyne, s 43.5 73 0.0025 28.3 7.9 55 43-106 17-74 (415)
136 2ixa_A Alpha-N-acetylgalactosa 43.5 44 0.0015 31.0 6.7 73 45-130 19-99 (444)
137 3jvi_A Protein tyrosine phosph 43.4 50 0.0017 26.7 6.2 81 45-131 3-92 (161)
138 3oa2_A WBPB; oxidoreductase, s 43.4 39 0.0013 30.0 6.0 33 45-83 2-37 (318)
139 3i23_A Oxidoreductase, GFO/IDH 43.3 15 0.00053 32.9 3.3 46 46-101 2-49 (349)
140 3by5_A Cobalamin biosynthesis 43.1 49 0.0017 27.1 6.1 53 52-106 15-71 (155)
141 3c85_A Putative glutathione-re 43.0 45 0.0016 26.5 5.9 69 46-129 39-112 (183)
142 2glx_A 1,5-anhydro-D-fructose 42.7 36 0.0012 29.8 5.7 65 47-130 1-70 (332)
143 3c1a_A Putative oxidoreductase 42.2 16 0.00055 32.2 3.2 37 42-83 6-44 (315)
144 2lbw_A H/ACA ribonucleoprotein 41.9 30 0.001 26.8 4.4 28 89-121 53-80 (121)
145 3d1l_A Putative NADP oxidoredu 41.7 14 0.00046 31.6 2.6 66 46-130 10-76 (266)
146 3nkl_A UDP-D-quinovosamine 4-d 41.6 1.1E+02 0.0037 23.0 8.4 59 45-106 3-72 (141)
147 2y1e_A 1-deoxy-D-xylulose 5-ph 41.2 68 0.0023 30.3 7.4 80 44-129 19-112 (398)
148 3bl5_A Queuosine biosynthesis 40.9 65 0.0022 26.3 6.6 55 47-106 4-63 (219)
149 3e82_A Putative oxidoreductase 40.5 60 0.0021 29.2 6.9 35 45-83 6-42 (364)
150 1rlg_A 50S ribosomal protein L 40.3 55 0.0019 25.1 5.7 52 63-121 35-87 (119)
151 2czc_A Glyceraldehyde-3-phosph 39.6 1.2E+02 0.0042 27.1 8.8 50 46-103 2-52 (334)
152 3s2u_A UDP-N-acetylglucosamine 39.3 70 0.0024 28.6 7.1 54 46-106 2-58 (365)
153 2wja_A Putative acid phosphata 39.3 40 0.0014 27.6 5.0 80 46-131 26-108 (168)
154 2ale_A SNU13, NHP2/L7AE family 39.0 39 0.0013 26.8 4.8 86 10-121 4-92 (134)
155 4fzr_A SSFS6; structural genom 38.8 1.2E+02 0.0042 26.7 8.6 54 44-106 13-69 (398)
156 3otg_A CALG1; calicheamicin, T 38.7 79 0.0027 27.9 7.3 55 43-106 17-74 (412)
157 2gcg_A Glyoxylate reductase/hy 38.7 2.1E+02 0.0072 25.4 10.9 161 46-261 155-322 (330)
158 2j6i_A Formate dehydrogenase; 38.1 1.1E+02 0.0037 28.0 8.3 162 46-261 164-338 (364)
159 3hdj_A Probable ornithine cycl 38.1 1.5E+02 0.005 26.5 9.0 104 45-194 120-225 (313)
160 4etm_A LMPTP, low molecular we 37.8 64 0.0022 26.5 6.1 84 43-131 15-107 (173)
161 2h78_A Hibadh, 3-hydroxyisobut 37.6 41 0.0014 29.1 5.1 65 45-130 2-67 (302)
162 4dio_A NAD(P) transhydrogenase 37.5 96 0.0033 29.2 7.9 102 45-183 189-312 (405)
163 2w2k_A D-mandelate dehydrogena 37.5 1.5E+02 0.0051 26.8 9.0 162 46-261 163-331 (348)
164 2dbq_A Glyoxylate reductase; D 37.4 1.3E+02 0.0045 26.9 8.6 160 46-261 150-315 (334)
165 3gt0_A Pyrroline-5-carboxylate 36.9 18 0.0006 30.7 2.5 67 46-130 2-71 (247)
166 3oti_A CALG3; calicheamicin, T 36.8 1.1E+02 0.0037 27.1 7.9 52 45-106 19-73 (398)
167 3keo_A Redox-sensing transcrip 36.5 55 0.0019 28.0 5.6 101 14-130 43-156 (212)
168 3pp8_A Glyoxylate/hydroxypyruv 36.4 97 0.0033 27.8 7.5 115 114-263 185-305 (315)
169 4fgw_A Glycerol-3-phosphate de 36.1 25 0.00086 33.0 3.6 23 43-65 31-54 (391)
170 1xbi_A 50S ribosomal protein L 35.9 48 0.0016 25.6 4.7 59 52-121 30-89 (120)
171 2fc3_A 50S ribosomal protein L 35.6 58 0.002 25.2 5.2 59 52-121 29-88 (124)
172 3t38_A Arsenate reductase; low 35.2 1.4E+02 0.0049 25.4 8.0 81 43-130 78-161 (213)
173 1xea_A Oxidoreductase, GFO/IDH 34.9 21 0.00073 31.5 2.8 49 46-102 2-51 (323)
174 4dll_A 2-hydroxy-3-oxopropiona 34.7 59 0.002 28.7 5.8 65 45-130 30-95 (320)
175 3j21_Z 50S ribosomal protein L 34.3 36 0.0012 25.2 3.6 17 89-105 47-63 (99)
176 3mt0_A Uncharacterized protein 34.3 75 0.0026 27.0 6.2 41 91-133 204-248 (290)
177 2xzm_U Ribosomal protein L7AE 34.2 59 0.002 25.5 5.0 49 52-107 25-75 (126)
178 3gg9_A D-3-phosphoglycerate de 34.1 1.9E+02 0.0066 26.3 9.3 162 46-261 160-327 (352)
179 3h4t_A Glycosyltransferase GTF 34.1 2.1E+02 0.0072 25.5 9.5 51 47-106 1-54 (404)
180 1np3_A Ketol-acid reductoisome 34.0 53 0.0018 29.5 5.4 64 46-130 16-80 (338)
181 1h6d_A Precursor form of gluco 33.8 77 0.0026 29.4 6.6 51 45-101 82-132 (433)
182 2ioj_A Hypothetical protein AF 33.8 40 0.0014 26.2 4.0 32 75-106 74-105 (139)
183 1vq8_F 50S ribosomal protein L 33.7 55 0.0019 25.1 4.7 59 52-121 30-89 (120)
184 1vl2_A Argininosuccinate synth 33.5 76 0.0026 30.1 6.5 58 44-106 12-73 (421)
185 1f0k_A MURG, UDP-N-acetylgluco 33.3 1.6E+02 0.0055 25.2 8.3 53 47-106 7-62 (364)
186 3gdo_A Uncharacterized oxidore 33.3 62 0.0021 29.0 5.7 65 45-130 4-73 (358)
187 2pg3_A Queuosine biosynthesis 33.3 73 0.0025 26.6 5.9 55 47-106 3-63 (232)
188 3hbm_A UDP-sugar hydrolase; PS 33.2 72 0.0025 28.2 6.0 73 47-133 1-80 (282)
189 2g76_A 3-PGDH, D-3-phosphoglyc 33.1 1.3E+02 0.0045 27.2 7.9 160 46-261 165-330 (335)
190 3ia7_A CALG4; glycosysltransfe 32.9 1E+02 0.0035 26.9 7.0 52 46-106 4-58 (402)
191 3d4o_A Dipicolinate synthase s 32.5 2.4E+02 0.0083 24.3 10.5 91 45-184 154-245 (293)
192 3on1_A BH2414 protein; structu 32.4 28 0.00097 25.9 2.7 28 89-121 50-77 (101)
193 4egs_A Ribose 5-phosphate isom 32.4 49 0.0017 27.4 4.5 84 43-131 31-121 (180)
194 1id1_A Putative potassium chan 32.2 1E+02 0.0034 23.6 6.2 73 46-130 3-79 (153)
195 3n8i_A Low molecular weight ph 31.9 94 0.0032 25.0 6.1 82 45-132 4-94 (157)
196 2r6j_A Eugenol synthase 1; phe 31.7 1.5E+02 0.0051 25.3 7.8 73 47-130 12-87 (318)
197 3o85_A Ribosomal protein L7AE; 31.5 58 0.002 25.3 4.5 85 11-121 4-91 (122)
198 1tq8_A Hypothetical protein RV 31.4 1.8E+02 0.0062 22.4 8.6 88 44-133 15-130 (163)
199 3hg7_A D-isomer specific 2-hyd 31.3 84 0.0029 28.4 6.2 115 115-263 187-306 (324)
200 3v7q_A Probable ribosomal prot 30.8 36 0.0012 25.4 3.1 28 89-121 51-78 (101)
201 3kux_A Putative oxidoreductase 30.3 89 0.003 27.8 6.2 69 41-129 2-74 (352)
202 3s40_A Diacylglycerol kinase; 30.2 1.4E+02 0.0049 26.1 7.5 10 44-53 6-15 (304)
203 3tsa_A SPNG, NDP-rhamnosyltran 29.8 1.4E+02 0.0047 26.2 7.3 51 46-105 1-54 (391)
204 3beo_A UDP-N-acetylglucosamine 29.5 2.7E+02 0.0091 23.8 9.7 82 45-130 7-103 (375)
205 1vbk_A Hypothetical protein PH 29.0 72 0.0025 28.5 5.3 77 46-131 179-264 (307)
206 2l82_A Designed protein OR32; 28.9 1.2E+02 0.004 23.9 5.8 81 49-131 4-86 (162)
207 2o2z_A Hypothetical protein; s 28.9 81 0.0028 28.9 5.7 38 45-86 3-40 (323)
208 3doj_A AT3G25530, dehydrogenas 28.8 42 0.0014 29.5 3.7 67 43-130 18-85 (310)
209 3au8_A 1-deoxy-D-xylulose 5-ph 28.8 1.3E+02 0.0046 29.1 7.3 61 43-107 74-137 (488)
210 1ygy_A PGDH, D-3-phosphoglycer 28.8 3.5E+02 0.012 25.8 10.5 134 46-233 142-281 (529)
211 4dgs_A Dehydrogenase; structur 28.6 95 0.0032 28.3 6.1 92 164-263 239-335 (340)
212 4g2n_A D-isomer specific 2-hyd 27.9 1.7E+02 0.0059 26.6 7.8 114 116-262 221-339 (345)
213 2aif_A Ribosomal protein L7A; 27.8 59 0.002 25.7 4.0 28 89-121 74-101 (135)
214 1yb4_A Tartronic semialdehyde 27.8 54 0.0018 28.0 4.1 18 45-62 2-20 (295)
215 1zzg_A Glucose-6-phosphate iso 27.7 60 0.0021 30.6 4.7 59 45-107 115-182 (415)
216 3okp_A GDP-mannose-dependent a 27.7 1.2E+02 0.0042 26.0 6.6 79 45-130 3-94 (394)
217 1wwk_A Phosphoglycerate dehydr 27.6 3.2E+02 0.011 24.1 9.4 133 46-234 142-283 (307)
218 2gi4_A Possible phosphotyrosin 27.3 88 0.003 25.0 5.1 79 47-130 2-89 (156)
219 1qyc_A Phenylcoumaran benzylic 26.8 1.8E+02 0.0062 24.4 7.4 76 46-130 4-85 (308)
220 2nz2_A Argininosuccinate synth 26.3 1.3E+02 0.0045 28.2 6.8 56 46-106 5-64 (413)
221 1w41_A 50S ribosomal protein L 26.3 42 0.0014 24.9 2.7 28 89-121 48-76 (101)
222 3i6i_A Putative leucoanthocyan 25.8 1.1E+02 0.0037 26.6 5.9 77 46-132 10-93 (346)
223 3iz5_f 60S ribosomal protein L 25.6 42 0.0015 25.8 2.7 48 52-105 27-74 (112)
224 3p2y_A Alanine dehydrogenase/p 25.6 1.2E+02 0.0042 28.2 6.4 103 45-184 183-303 (381)
225 1v8b_A Adenosylhomocysteinase; 25.6 1.9E+02 0.0065 27.8 7.9 88 45-183 256-344 (479)
226 2ppv_A Uncharacterized protein 25.2 90 0.0031 28.7 5.2 37 46-86 4-40 (332)
227 2pjk_A 178AA long hypothetical 24.8 90 0.0031 25.6 4.8 73 45-133 14-92 (178)
228 4a17_F RPL7A, 60S ribosomal pr 24.8 2.2E+02 0.0075 25.2 7.5 76 45-132 118-197 (255)
229 3r5t_A Ferric vibriobactin ABC 24.7 2.2E+02 0.0074 24.5 7.6 77 43-132 20-96 (305)
230 1x7d_A Ornithine cyclodeaminas 24.6 1.2E+02 0.0041 27.5 6.0 70 45-131 128-203 (350)
231 3dhn_A NAD-dependent epimerase 24.4 95 0.0032 25.0 4.9 18 113-130 58-75 (227)
232 2qv7_A Diacylglycerol kinase D 24.2 2E+02 0.0067 25.5 7.3 8 46-53 24-31 (337)
233 3jyw_G 60S ribosomal protein L 24.2 54 0.0018 25.4 3.1 51 51-108 25-77 (113)
234 1qyd_A Pinoresinol-lariciresin 24.0 1.1E+02 0.0036 26.0 5.3 75 46-130 4-84 (313)
235 2l17_A Synarsc, arsenate reduc 24.0 64 0.0022 25.1 3.5 76 46-129 4-82 (134)
236 2rir_A Dipicolinate synthase, 24.0 3.4E+02 0.012 23.4 8.8 67 45-130 156-223 (300)
237 3c1o_A Eugenol synthase; pheny 23.9 2.2E+02 0.0074 24.2 7.4 76 45-130 3-85 (321)
238 3olq_A Universal stress protei 23.8 1.7E+02 0.0057 24.9 6.6 41 91-133 233-277 (319)
239 3fhl_A Putative oxidoreductase 23.7 46 0.0016 29.9 3.0 34 45-83 4-40 (362)
240 1sur_A PAPS reductase; assimil 23.6 97 0.0033 25.5 4.8 56 47-107 45-105 (215)
241 3ecs_A Translation initiation 23.5 2.3E+02 0.008 25.6 7.7 71 50-129 124-196 (315)
242 3rpe_A MDAB, modulator of drug 23.4 2.4E+02 0.0081 23.9 7.4 35 115-149 76-112 (218)
243 3dm5_A SRP54, signal recogniti 23.3 4.3E+02 0.015 24.9 9.8 71 59-132 116-192 (443)
244 3h9u_A Adenosylhomocysteinase; 23.3 2.2E+02 0.0076 27.0 7.8 87 46-183 211-298 (436)
245 2gas_A Isoflavone reductase; N 23.2 2.6E+02 0.0088 23.4 7.6 32 96-130 53-84 (307)
246 1jw9_B Molybdopterin biosynthe 23.2 83 0.0028 26.9 4.4 18 113-130 112-129 (249)
247 3k96_A Glycerol-3-phosphate de 23.0 1.1E+02 0.0039 27.6 5.6 21 45-65 28-49 (356)
248 3ijp_A DHPR, dihydrodipicolina 22.9 24 0.00081 31.8 0.8 35 45-83 20-56 (288)
249 3hbm_A UDP-sugar hydrolase; PS 22.8 2.2E+02 0.0076 24.9 7.3 75 46-130 157-233 (282)
250 2axq_A Saccharopine dehydrogen 22.8 1.5E+02 0.0051 28.1 6.5 73 45-130 22-96 (467)
251 2wm3_A NMRA-like family domain 22.8 3.1E+02 0.011 22.9 8.1 73 46-130 5-80 (299)
252 1gdh_A D-glycerate dehydrogena 22.7 4E+02 0.014 23.5 9.3 161 46-262 146-313 (320)
253 2bon_A Lipid kinase; DAG kinas 22.5 2.5E+02 0.0084 24.9 7.6 8 46-53 29-36 (332)
254 3pdu_A 3-hydroxyisobutyrate de 22.4 51 0.0017 28.4 2.9 64 46-130 1-65 (287)
255 2g5c_A Prephenate dehydrogenas 22.3 82 0.0028 26.8 4.2 68 46-130 1-70 (281)
256 3cpq_A 50S ribosomal protein L 21.7 51 0.0017 25.0 2.4 28 89-121 53-81 (110)
257 2q8n_A Glucose-6-phosphate iso 21.3 90 0.0031 29.9 4.6 59 45-107 139-205 (460)
258 3uw1_A Ribose-5-phosphate isom 21.2 1E+02 0.0035 27.0 4.6 73 17-106 11-83 (239)
259 2dt5_A AT-rich DNA-binding pro 20.9 1.2E+02 0.0042 25.6 5.0 99 14-130 39-148 (211)
260 2zkr_f 60S ribosomal protein L 20.8 1.6E+02 0.0054 26.3 5.8 63 48-121 132-195 (266)
261 4gmk_A Ribose-5-phosphate isom 20.7 2.1E+02 0.0073 24.8 6.5 68 17-106 4-75 (228)
262 1o2d_A Alcohol dehydrogenase, 20.5 1.1E+02 0.0039 27.7 5.0 87 40-133 13-109 (371)
263 3g0o_A 3-hydroxyisobutyrate de 20.4 92 0.0032 27.0 4.2 66 45-130 6-72 (303)
264 4gwg_A 6-phosphogluconate dehy 20.4 1.1E+02 0.0039 29.2 5.1 70 45-129 3-75 (484)
265 3cky_A 2-hydroxymethyl glutara 20.2 90 0.0031 26.7 4.0 18 45-62 3-21 (301)
266 1jf8_A Arsenate reductase; ptp 20.1 1.4E+02 0.0048 23.0 4.8 76 46-129 3-81 (131)
No 1
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=100.00 E-value=5.7e-56 Score=409.25 Aligned_cols=233 Identities=35% Similarity=0.599 Sum_probs=213.5
Q ss_pred CeeEEEEEEcCCCCCChHhHHHHHHHHHHHhcccccccccCCCCCCceEEEEEECCchhHHHHHHhhhcCCCCceEEEEe
Q 024060 1 MIKMCIEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVI 80 (273)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~l~~~f~~l~~~~~~~~~~~r~~~~~~~~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vv 80 (273)
+||||++|+++. ..+.++|+++|.+++.++ .|. |++...++++||+||+||+||||++|++++++|.++++|++|+
T Consensus 49 ~Ffmr~~~~~~~-~~~~~~L~~~f~~la~~l-~m~--~~l~~~~~~~ri~vl~Sg~g~~l~~ll~~~~~g~l~~~i~~Vi 124 (286)
T 3n0v_A 49 RFFIRVEFRQPD-DFDEAGFRAGLAERSEAF-GMA--FELTAPNHRPKVVIMVSKADHCLNDLLYRQRIGQLGMDVVAVV 124 (286)
T ss_dssp EEEEEEEEECCS-SCCHHHHHHHHHHHHGGG-TCE--EEEECTTCCCEEEEEESSCCHHHHHHHHHHHTTSSCCEEEEEE
T ss_pred eeEEEEEEecCC-CCCHHHHHHHHHHHHHHc-CCE--EEeecCCCCcEEEEEEeCCCCCHHHHHHHHHCCCCCcEEEEEE
Confidence 489999999877 688999999999999999 454 4555567789999999999999999999999999999999999
Q ss_pred eCCCCCCCcHHHHHHHHcCCCEEEEcCCCCch---HHHHHHHhc--CCCEEEEEeecCCcchhhHhhhhhhhhhhhcccC
Q 024060 81 SNHDRGPNSHVIRFLERHGIPYHYLCAKENER---EEELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKG 155 (273)
Q Consensus 81 s~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~---~~~~~~~l~--~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~ 155 (273)
||+++ +..+|+++|||++.++.+...+ ++++.+.++ ++|++|++|||+
T Consensus 125 sn~~~-----~~~~A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivla~y~~---------------------- 177 (286)
T 3n0v_A 125 SNHPD-----LEPLAHWHKIPYYHFALDPKDKPGQERKVLQVIEETGAELVILARYMQ---------------------- 177 (286)
T ss_dssp ESSST-----THHHHHHTTCCEEECCCBTTBHHHHHHHHHHHHHHHTCSEEEESSCCS----------------------
T ss_pred eCcHH-----HHHHHHHcCCCEEEeCCCcCCHHHHHHHHHHHHHhcCCCEEEeccccc----------------------
Confidence 99853 3577999999999887433233 457888886 899999999999
Q ss_pred cccccccccCChhHHhhcCCCeeEeecCCCCCCCCChHHHHHHHhCCCEeEEEEEEecCccCCCCeeEEEEEecCCCCCH
Q 024060 156 SLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNL 235 (273)
Q Consensus 156 ~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~p~~~ai~~G~~~~GvT~H~~~~~~D~G~Ii~Q~~~~I~~~dt~ 235 (273)
|||+++++.+++++||+||||||+|||++|++||+.+|++.+|+|+|+|++++|+||||.|+.++|.++||.
T Consensus 178 --------il~~~~l~~~~~~~iNiHpSlLP~~rG~~p~~~Ai~~G~~~~G~Tvh~v~~~lD~GpIi~Q~~~~i~~~dt~ 249 (286)
T 3n0v_A 178 --------VLSPELCRRLDGWAINIHHSLLPGFKGAKPYHQAYNKGVKMVGATAHYINNDLDEGPIIAQGVEVVDHSHYP 249 (286)
T ss_dssp --------CCCHHHHHHTTTSEEEEEECSSTTCCCSCHHHHHHHHTCSEEEEEEEECCSSTTCSCEEEEEEEECCTTCCH
T ss_pred --------ccCHHHHhhhcCCeEEeccccccCCCCccHHHHHHHcCCCeEEEEEEEEcCCCCCCceeEEEEEEcCCCCCH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCceeecCCceeeC
Q 024060 236 RTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVVF 273 (273)
Q Consensus 236 ~~L~~rl~~~~~~ll~~~i~~l~~g~~~~~~~~k~~vf 273 (273)
++|.+|+.++++++++++++.+++|++.... +|||||
T Consensus 250 ~~L~~r~~~~e~~~l~~av~~~~~~~~~~~~-~~~~vf 286 (286)
T 3n0v_A 250 EDLIAKGRDIECLTLARAVGYHIERRVFLNA-NRTVVL 286 (286)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCEEEET-TEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCEEEcC-CEEEEC
Confidence 9999999999999999999999999999986 999998
No 2
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=100.00 E-value=4.4e-56 Score=412.74 Aligned_cols=234 Identities=46% Similarity=0.707 Sum_probs=214.3
Q ss_pred CeeEEEEEEcCCCCCChHhHHHHHHHHHHHhcccccccccCCCCCCceEEEEEECCchhHHHHHHhhhcCCCCceEEEEe
Q 024060 1 MIKMCIEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVI 80 (273)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~l~~~f~~l~~~~~~~~~~~r~~~~~~~~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vv 80 (273)
+||||++|+++....+.++|+++|.+++.++ .|.| ++...++++||+||+||+||||++|++++++|.++++|++||
T Consensus 63 ~FfMr~~~~~~~~~~~~~~L~~~l~~la~~l-~m~~--~l~~~~~~~ri~vl~Sg~g~nl~~ll~~~~~g~l~~~I~~Vi 139 (302)
T 3o1l_A 63 WFFMRHEIRADTLPFDLDGFREAFTPIAEEF-SMDW--RITDSAQKKRVVLMASRESHCLADLLHRWHSDELDCDIACVI 139 (302)
T ss_dssp EEEEEEEEEGGGSSSCHHHHHHHHHHHHHHH-TCEE--EEEETTSCCEEEEEECSCCHHHHHHHHHHHTTCSCSEEEEEE
T ss_pred eEEEEEEEecCCCCCCHHHHHHHHHHHHHHh-CCee--eecccCCCcEEEEEEeCCchhHHHHHHHHHCCCCCcEEEEEE
Confidence 4899999999877789999999999999999 4553 454566789999999999999999999999999999999999
Q ss_pred eCCCCCCCcHHHHHHHHcCCCEEEEcCCCCch---HHHHHHHhc--CCCEEEEEeecCCcchhhHhhhhhhhhhhhcccC
Q 024060 81 SNHDRGPNSHVIRFLERHGIPYHYLCAKENER---EEELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKG 155 (273)
Q Consensus 81 s~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~---~~~~~~~l~--~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~ 155 (273)
||+++ +.++|+++|||++.++.+...+ ++++.+.++ ++|++|+||||+
T Consensus 140 sn~~~-----~~~~A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~DliVlagym~---------------------- 192 (302)
T 3o1l_A 140 SNHQD-----LRSMVEWHDIPYYHVPVDPKDKEPAFAEVSRLVGHHQADVVVLARYMQ---------------------- 192 (302)
T ss_dssp ESSST-----THHHHHTTTCCEEECCCCSSCCHHHHHHHHHHHHHTTCSEEEESSCCS----------------------
T ss_pred ECcHH-----HHHHHHHcCCCEEEcCCCcCCHHHHHHHHHHHHHHhCCCEEEHhHhhh----------------------
Confidence 99853 4678999999999876432222 457888886 899999999999
Q ss_pred cccccccccCChhHHhhcCCCeeEeecCCCCCCCCChHHHHHHHhCCCEeEEEEEEecCccCCCCeeEEEEEecCCCCCH
Q 024060 156 SLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNL 235 (273)
Q Consensus 156 ~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~p~~~ai~~G~~~~GvT~H~~~~~~D~G~Ii~Q~~~~I~~~dt~ 235 (273)
|||+++++.|++++||+||||||+|||++|++||+.+|++.+|+|+|+|++++|+||||.|+.++|.++||.
T Consensus 193 --------IL~~~~l~~~~~~~INiHpSlLP~frG~~p~~~Ai~~G~k~tG~TvH~v~~~lD~GpII~Q~~v~I~~~dt~ 264 (302)
T 3o1l_A 193 --------ILPPQLCREYAHQVINIHHSFLPSFVGAKPYHQASLRGVKLIGATCHYVTEELDAGPIIEQDVVRVSHRDSI 264 (302)
T ss_dssp --------CCCTTHHHHTTTCEEEEESSCTTSSCSSCHHHHHHHHTCSEEEEEEEECCSSTTCSCEEEEEEEECCTTCCH
T ss_pred --------hcCHHHHhhhhCCeEEeCcccccCCCCccHHHHHHHcCCCeEEEEEEEECCCCcCCCeEEEEEEecCCCCCH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCceeecCCceeeC
Q 024060 236 RTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVVF 273 (273)
Q Consensus 236 ~~L~~rl~~~~~~ll~~~i~~l~~g~~~~~~~~k~~vf 273 (273)
++|.+|+.++++++++++++.+++|++.... +|||||
T Consensus 265 ~~L~~r~~~~e~~~l~~av~~~~~~~v~~~~-~~~~vf 301 (302)
T 3o1l_A 265 ENMVRFGRDVEKMVLARGLRAHLEDRVLVHD-NKTVVF 301 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCEEEET-TEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCEEEcC-CEEEEc
Confidence 9999999999999999999999999999986 999998
No 3
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=100.00 E-value=7.4e-56 Score=409.57 Aligned_cols=234 Identities=38% Similarity=0.645 Sum_probs=211.8
Q ss_pred CeeEEEEEEcC--CCCCChHhHHHHHHHHHHHhcccccccccCCCCCCceEEEEEECCchhHHHHHHhhhcCCCCceEEE
Q 024060 1 MIKMCIEFIFD--PIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITC 78 (273)
Q Consensus 1 ~~~~~~~~~~~--~~~~~~~~l~~~f~~l~~~~~~~~~~~r~~~~~~~~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~ 78 (273)
+||||++|+.+ ....+.+.|+++|.+++.++ .|. |++...++++||+||+||+||||++|++++++|.++++|++
T Consensus 51 ~Ffmr~~~~~~~~~~~~~~~~L~~~f~~la~~~-~m~--~~l~~~~~~~ri~vl~Sg~g~~l~~ll~~~~~g~l~~~i~~ 127 (292)
T 3lou_A 51 RFFVRCVFHATDDADALRVDALRREFEPIAERF-RMQ--WAIHDVAARPKVLIMVSKLEHCLADLLFRWKMGELKMDIVG 127 (292)
T ss_dssp EEEEEEEEEECC----CCHHHHHHHHHHHHHHH-TCE--EEEEETTSCCEEEEEECSCCHHHHHHHHHHHHTSSCCEEEE
T ss_pred ceEEEEEEEccCcccCCCHHHHHHHHHHHHHhc-CcE--EEeeccCCCCEEEEEEcCCCcCHHHHHHHHHcCCCCcEEEE
Confidence 48999999987 55688999999999999999 455 35545667899999999999999999999999999999999
Q ss_pred EeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCch---HHHHHHHhc--CCCEEEEEeecCCcchhhHhhhhhhhhhhhcc
Q 024060 79 VISNHDRGPNSHVIRFLERHGIPYHYLCAKENER---EEELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSS 153 (273)
Q Consensus 79 Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~---~~~~~~~l~--~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~ 153 (273)
||||+++ +..+|+++|||++.++.+...+ ++++.+.++ ++|++|+||||+
T Consensus 128 Visn~~~-----~~~~A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivla~y~~-------------------- 182 (292)
T 3lou_A 128 IVSNHPD-----FAPLAAQHGLPFRHFPITADTKAQQEAQWLDVFETSGAELVILARYMQ-------------------- 182 (292)
T ss_dssp EEESSST-----THHHHHHTTCCEEECCCCSSCHHHHHHHHHHHHHHHTCSEEEESSCCS--------------------
T ss_pred EEeCcHH-----HHHHHHHcCCCEEEeCCCcCCHHHHHHHHHHHHHHhCCCEEEecCchh--------------------
Confidence 9999853 3567999999999887433223 457888886 899999999999
Q ss_pred cCcccccccccCChhHHhhcCCCeeEeecCCCCCCCCChHHHHHHHhCCCEeEEEEEEecCccCCCCeeEEEEEecCCCC
Q 024060 154 KGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRD 233 (273)
Q Consensus 154 ~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~p~~~ai~~G~~~~GvT~H~~~~~~D~G~Ii~Q~~~~I~~~d 233 (273)
|||+++++.|++++||+||||||+|||++|++||+.+|++.+|+|+|+|++++|+||||.|+.++|.++|
T Consensus 183 ----------il~~~~l~~~~~~~iNiHpSlLP~~rG~~p~~~Ai~~G~~~~G~Tvh~v~~~lD~G~Ii~Q~~v~i~~~d 252 (292)
T 3lou_A 183 ----------VLSPEASARLANRAINIHHSFLPGFKGAKPYHQAHARGVKLIGATAHFVTDDLDEGPIIEQVVERVDHSY 252 (292)
T ss_dssp ----------CCCHHHHHHTTTSEEEEEEECSSCCCSSCHHHHHHHHTCSEEEEEEEECCSSTTCSCEEEEEEEECCTTC
T ss_pred ----------hCCHHHHhhhcCCeEEeCCCcCcCCCCccHHHHHHHcCCCeEEEEEEEEcCCCcCCCEEEEEEEEcCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCceeecCCceeeC
Q 024060 234 NLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVVF 273 (273)
Q Consensus 234 t~~~L~~rl~~~~~~ll~~~i~~l~~g~~~~~~~~k~~vf 273 (273)
|.++|.+|+.++++++++++++.+++|++.... +|||||
T Consensus 253 t~~~L~~r~~~~e~~~l~~av~~~~~~~~~~~~-~~~~vf 291 (292)
T 3lou_A 253 RPEQLLAVGRDVECITLARAVKAFIERRVFLNG-DRTVVF 291 (292)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEET-TEEEEC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCEEEcC-CEEEEe
Confidence 999999999999999999999999999999986 999998
No 4
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=100.00 E-value=6.8e-56 Score=409.11 Aligned_cols=235 Identities=41% Similarity=0.649 Sum_probs=214.1
Q ss_pred CeeEEEEEEcCCCCCChHhHHHHHHHHHHHhcccccccccCCCCCCceEEEEEECCchhHHHHHHhhhcCCCCceEEEEe
Q 024060 1 MIKMCIEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVI 80 (273)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~l~~~f~~l~~~~~~~~~~~r~~~~~~~~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vv 80 (273)
+||||++|+++....+.++|+++|.+++.++ .|. |++...++++|||||+||+||||++|++++++|.++++|++||
T Consensus 47 ~Ffmr~~~~~~~~~~~~~~L~~~f~~la~~~-~m~--~~l~~~~~~~ri~vl~Sg~g~nl~~ll~~~~~g~l~~~i~~Vi 123 (288)
T 3obi_A 47 HFFMRVVFNAAAKVIPLASLRTGFGVIAAKF-TMG--WHMRDRETRRKVMLLVSQSDHCLADILYRWRVGDLHMIPTAIV 123 (288)
T ss_dssp EEEEEEEEEESSCCCCHHHHHHHHHHHHHHT-TCE--EEEEETTSCEEEEEEECSCCHHHHHHHHHHHTTSSCEEEEEEE
T ss_pred ceEEEEEEEcCCCCCCHHHHHHHHHHHHHHc-CCE--EEeeccCCCcEEEEEEcCCCCCHHHHHHHHHCCCCCeEEEEEE
Confidence 4899999999887789999999999999999 455 3454456789999999999999999999999999999999999
Q ss_pred eCCCCCCCcHHHHHHHHcCCCEEEEcCCCCch---HHHHHHHhc--CCCEEEEEeecCCcchhhHhhhhhhhhhhhcccC
Q 024060 81 SNHDRGPNSHVIRFLERHGIPYHYLCAKENER---EEELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKG 155 (273)
Q Consensus 81 s~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~---~~~~~~~l~--~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~ 155 (273)
||++. .+.++|+++|||++.++.+...+ ++++.+.++ ++|++|++|||+
T Consensus 124 sn~p~----~~~~~A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivlagy~~---------------------- 177 (288)
T 3obi_A 124 SNHPR----ETFSGFDFGDIPFYHFPVNKDTRRQQEAAITALIAQTHTDLVVLARYMQ---------------------- 177 (288)
T ss_dssp ESSCG----GGSCCTTTTTCCEEECCCCTTTHHHHHHHHHHHHHHHTCCEEEESSCCS----------------------
T ss_pred cCCCh----hHHHHHHHcCCCEEEeCCCcccHHHHHHHHHHHHHhcCCCEEEhhhhhh----------------------
Confidence 99821 24578999999999887432223 457788886 899999999999
Q ss_pred cccccccccCChhHHhhcCCCeeEeecCCCCCCCCChHHHHHHHhCCCEeEEEEEEecCccCCCCeeEEEEEecCCCCCH
Q 024060 156 SLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNL 235 (273)
Q Consensus 156 ~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~p~~~ai~~G~~~~GvT~H~~~~~~D~G~Ii~Q~~~~I~~~dt~ 235 (273)
|||+++++.|++++||+||||||+|||++|++||+.+|++.+|+|+|+|++++|+||||.|+.++|.++||.
T Consensus 178 --------il~~~~l~~~~~~~iNiHpSlLP~~rG~~p~~~A~~~G~~~~G~Tvh~v~~~~D~GpIi~Q~~v~i~~~dt~ 249 (288)
T 3obi_A 178 --------ILSDEMSARLAGRCINIHHSFLPGFKGAKPYHQAFDRGVKLIGATAHYVTSALDEGPIIDQDVERISHRDTP 249 (288)
T ss_dssp --------CCCHHHHHHTTTSEEEEEEECSSCCCSSCHHHHHHHHTCSEEEEEEEECCSSTTCSCEEEEEEEECCTTCCH
T ss_pred --------hCCHHHHhhhcCCeEEeCcccccCCCCchHHHHHHHcCCCEEEEEEEEECCCCcCCCeEEEEEEecCCCCCH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCceeecCCceeeC
Q 024060 236 RTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVVF 273 (273)
Q Consensus 236 ~~L~~rl~~~~~~ll~~~i~~l~~g~~~~~~~~k~~vf 273 (273)
++|.+|+.++++++++++++.+++|++.... +|||||
T Consensus 250 ~~L~~r~~~~e~~~l~~av~~~~~~~~~~~~-~~~~vf 286 (288)
T 3obi_A 250 ADLVRKGRDIERRVLSRALHYHLDDRVILNG-RKTVVF 286 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCEEEET-TEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCEEEcC-CEEEEc
Confidence 9999999999999999999999999999986 999998
No 5
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=100.00 E-value=5.8e-56 Score=409.41 Aligned_cols=233 Identities=39% Similarity=0.614 Sum_probs=209.8
Q ss_pred CeeEEEEEEcCCCCCChHhHHHHHHHHHHHhcccccccccCCCCCCceEEEEEECCchhHHHHHHhhhcCCCCceEEEEe
Q 024060 1 MIKMCIEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVI 80 (273)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~l~~~f~~l~~~~~~~~~~~r~~~~~~~~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vv 80 (273)
+||||++|++++. +.++|+++|.+++.++ .|. |++...++++||+||+||+||||++|++++++|.++++|++||
T Consensus 48 ~Ffmr~~~~~~~~--~~~~L~~~f~~la~~~-~m~--~~l~~~~~~~ri~vl~Sg~g~nl~~ll~~~~~g~l~~~i~~Vi 122 (287)
T 3nrb_A 48 KFFMRVSVEIPVA--GVNDFNSAFGKVVEKY-NAE--WWFRPRTDRKKVVIMVSKFDHCLGDLLYRHRLGELDMEVVGII 122 (287)
T ss_dssp EEEEEEEEECCC-----CHHHHHHHHHHGGG-TCE--EEEEETTCCCEEEEEECSCCHHHHHHHHHHHHTSSCCEEEEEE
T ss_pred eEEEEEEEEcCCC--CHHHHHHHHHHHHHHc-CCe--eEeeccCCCcEEEEEEeCCCcCHHHHHHHHHCCCCCeEEEEEE
Confidence 4899999998764 3559999999999999 455 3454456789999999999999999999999999999999999
Q ss_pred eCCCCCCCcHHHHHHHHcCCCEEEEcCCCCch---HHHHHHHhc--CCCEEEEEeecCCcchhhHhhhhhhhhhhhcccC
Q 024060 81 SNHDRGPNSHVIRFLERHGIPYHYLCAKENER---EEELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKG 155 (273)
Q Consensus 81 s~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~---~~~~~~~l~--~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~ 155 (273)
||+++ + +.++|+++|||++.++.+...+ ++++.+.++ ++|++|++|||+
T Consensus 123 sn~~~---a-~~~~A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivlagym~---------------------- 176 (287)
T 3nrb_A 123 SNHPR---E-ALSVSLVGDIPFHYLPVTPATKAAQESQIKNIVTQSQADLIVLARYMQ---------------------- 176 (287)
T ss_dssp ESSCG---G-GCCCCCCTTSCEEECCCCGGGHHHHHHHHHHHHHHHTCSEEEESSCCS----------------------
T ss_pred eCChH---H-HHHHHHHcCCCEEEEeccCcchhhHHHHHHHHHHHhCCCEEEhhhhhh----------------------
Confidence 99853 2 6678999999999887432222 456788886 899999999999
Q ss_pred cccccccccCChhHHhhcCCCeeEeecCCCCCCCCChHHHHHHHhCCCEeEEEEEEecCccCCCCeeEEEEEecCCCCCH
Q 024060 156 SLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNL 235 (273)
Q Consensus 156 ~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~p~~~ai~~G~~~~GvT~H~~~~~~D~G~Ii~Q~~~~I~~~dt~ 235 (273)
|||+++++.|++++||+||||||+|||++|++||+.+|++.+|+|+|+|++++|+||||.|+.++|.++||.
T Consensus 177 --------il~~~~l~~~~~~~iNiHpSlLP~~rG~~p~~~Ai~~G~k~tG~Tvh~v~~~lD~GpIi~Q~~v~i~~~dt~ 248 (287)
T 3nrb_A 177 --------ILSDDLSAFLSGRCINIHHSFLPGFKGAKPYHQAHTRGVKLIGATAHFVTADLDEGPIIAQDVEHVSHRDSA 248 (287)
T ss_dssp --------CCCHHHHHHHTTSEEEEESSCTTTTCSSCHHHHHHHHTCSEEEEEEEECCSSSSCCCEEEEEEEECCTTCCH
T ss_pred --------hcCHHHHhhccCCeEEECcccccCCCCchHHHHHHHcCCCeEEEEEEEECCCCcCCCEEEEEEEecCCCCCH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCceeecCCceeeC
Q 024060 236 RTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVVF 273 (273)
Q Consensus 236 ~~L~~rl~~~~~~ll~~~i~~l~~g~~~~~~~~k~~vf 273 (273)
++|.+|+.+.++++++++++.+++|++.... +|||||
T Consensus 249 ~~L~~r~~~~e~~~l~~av~~~~~~~~~~~~-~~~~vf 285 (287)
T 3nrb_A 249 EDLVRKGRDIERRVLSRAVLLFLEDRLIVNG-ERTVVF 285 (287)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCEEEET-TEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCEEEcC-CEEEEc
Confidence 9999999999999999999999999999986 999998
No 6
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=100.00 E-value=3.9e-50 Score=356.83 Aligned_cols=196 Identities=31% Similarity=0.487 Sum_probs=178.6
Q ss_pred CCCCceEEEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhc-
Q 024060 43 IDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ- 121 (273)
Q Consensus 43 ~~~~~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~- 121 (273)
.++++||+||+||+|+|+++++++++++.++++|++|+||++ ++.++++|+++|||++.++.+ +.+++++.+.++
T Consensus 5 ~~~~~ri~vl~SG~gsnl~all~~~~~~~~~~~I~~Vis~~~---~a~~l~~A~~~gIp~~~~~~~-~~~~~~~~~~L~~ 80 (215)
T 3kcq_A 5 MKKELRVGVLISGRGSNLEALAKAFSTEESSVVISCVISNNA---EARGLLIAQSYGIPTFVVKRK-PLDIEHISTVLRE 80 (215)
T ss_dssp --CCEEEEEEESSCCHHHHHHHHHTCCC-CSEEEEEEEESCT---TCTHHHHHHHTTCCEEECCBT-TBCHHHHHHHHHH
T ss_pred CCCCCEEEEEEECCcHHHHHHHHHHHcCCCCcEEEEEEeCCc---chHHHHHHHHcCCCEEEeCcc-cCChHHHHHHHHH
Confidence 456789999999999999999999999988999999999974 345789999999999987643 234578888886
Q ss_pred -CCCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCCCCCCCCChHHHHHHHh
Q 024060 122 -NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDA 200 (273)
Q Consensus 122 -~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~p~~~ai~~ 200 (273)
++|++|++|||+ |||+++++.+++++||+||||||+|||++|++||+.+
T Consensus 81 ~~~Dlivlagy~~------------------------------IL~~~~l~~~~~~~iNiHpSLLP~yrG~~pi~~Ai~~ 130 (215)
T 3kcq_A 81 HDVDLVCLAGFMS------------------------------ILPEKFVTDWHHKIINIHPSLLPSFKGLNAQEQAYKA 130 (215)
T ss_dssp TTCSEEEESSCCS------------------------------CCCHHHHHHTTTSEEEEESSCTTTTCSSCHHHHHHHH
T ss_pred hCCCEEEEeCCce------------------------------EeCHHHHhhccCCeEEECcccccCCCCccHHHHHHHc
Confidence 899999999999 9999999999999999999999999999999999999
Q ss_pred CCCEeEEEEEEecCccCCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCceeecCCceee
Q 024060 201 GVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVV 272 (273)
Q Consensus 201 G~~~~GvT~H~~~~~~D~G~Ii~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~i~~l~~g~~~~~~~~k~~v 272 (273)
|++.+|+|+|+|++++|+||||.|+.++|.++||.++|++|+.+.++++++++++.+.+|++...+.+||++
T Consensus 131 G~~~tGvTvh~v~~~lD~G~Ii~Q~~v~I~~~dt~~~L~~rl~~~e~~ll~~~l~~~~~g~~~~~~~~~~~~ 202 (215)
T 3kcq_A 131 GVKIAGCTLHYVYQELDAGPIIMQAAVPVLREDTAESLASRILAAEHVCYPKGVKLIAQDKIKLCDDGTVQC 202 (215)
T ss_dssp TCSEEEEEEEECCSSTTCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECTTSCEEE
T ss_pred CCCeEEEEEEEEcCCCCCCCEEEEEEeecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEccCCEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999933488764
No 7
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=100.00 E-value=1.1e-49 Score=353.87 Aligned_cols=193 Identities=28% Similarity=0.431 Sum_probs=176.9
Q ss_pred CCceEEEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCC-CCch---HHHHHHHh
Q 024060 45 PKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAK-ENER---EEELLELV 120 (273)
Q Consensus 45 ~~~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~-~~~~---~~~~~~~l 120 (273)
.++|||||+||+||||++|++++++| ++++|++||||++ ++.++++|+++|||++.++.+ ...+ ++++.+.+
T Consensus 4 ~~~riavl~SG~Gsnl~all~~~~~~-~~~eI~~Vis~~~---~a~~~~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l 79 (215)
T 3tqr_A 4 EPLPIVVLISGNGTNLQAIIGAIQKG-LAIEIRAVISNRA---DAYGLKRAQQADIPTHIIPHEEFPSRTDFESTLQKTI 79 (215)
T ss_dssp CCEEEEEEESSCCHHHHHHHHHHHTT-CSEEEEEEEESCT---TCHHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHH
T ss_pred CCcEEEEEEeCCcHHHHHHHHHHHcC-CCCEEEEEEeCCc---chHHHHHHHHcCCCEEEeCccccCchhHhHHHHHHHH
Confidence 56899999999999999999999999 8999999999984 457789999999999987632 1222 46788888
Q ss_pred c--CCCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCCCCCCCCChHHHHHH
Q 024060 121 Q--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAF 198 (273)
Q Consensus 121 ~--~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~p~~~ai 198 (273)
+ ++|++|++|||+ |||+++++.+++++||+||||||+|||++|++||+
T Consensus 80 ~~~~~Dliv~agy~~------------------------------il~~~~l~~~~~~~iNiHpSLLP~yrG~~pi~~Ai 129 (215)
T 3tqr_A 80 DHYDPKLIVLAGFMR------------------------------KLGKAFVSHYSGRMINIHPSLLPKYTGLNTHERAL 129 (215)
T ss_dssp HTTCCSEEEESSCCS------------------------------CCCHHHHHHTTTSEEEEESSSTTTTCSSCHHHHHH
T ss_pred HhcCCCEEEEccchh------------------------------hCCHHHHhhccCCeEEeCcccCCCCCChhHHHHHH
Confidence 7 899999999999 99999999999999999999999999999999999
Q ss_pred HhCCCEeEEEEEEecCccCCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCceeecCCceee
Q 024060 199 DAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVV 272 (273)
Q Consensus 199 ~~G~~~~GvT~H~~~~~~D~G~Ii~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~i~~l~~g~~~~~~~~k~~v 272 (273)
.+|++++|+|+|+|++++|+||||.|+.++|.++||.++|++|+.+.++++++++++.+.+|++.+.+ +|+++
T Consensus 130 ~~G~~~tGvTvh~v~~~~D~G~Ii~Q~~v~I~~~dt~~~L~~rl~~~~~~ll~~~l~~~~~g~~~~~~-~~~~~ 202 (215)
T 3tqr_A 130 AAGETEHGVSVHYVTEDLDAGPLICQARLSITPQDTPETLKTRVHALEHIIYPEVLSWFAAGRLNYHN-NQVFL 202 (215)
T ss_dssp HTTCSEEEEEEEECC-CTTCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEET-TEEEE
T ss_pred HcCCCeEEEEEEEEcCCCCCCCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEecC-CEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999965 77653
No 8
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=100.00 E-value=2.5e-49 Score=350.78 Aligned_cols=193 Identities=28% Similarity=0.413 Sum_probs=178.5
Q ss_pred ceEEEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCC-CCch---HHHHHHHhc-
Q 024060 47 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAK-ENER---EEELLELVQ- 121 (273)
Q Consensus 47 ~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~-~~~~---~~~~~~~l~- 121 (273)
+||+||+||+|+||++|+++++++.++++|++|+|+++ ++.++++|+++|||++.++.+ .+.+ ++++.+.++
T Consensus 1 ~ri~vl~Sg~gsnl~ali~~~~~~~~~~~i~~Vis~~~---~~~~~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~ 77 (212)
T 1jkx_A 1 MNIVVLISGNGSNLQAIIDACKTNKIKGTVRAVFSNKA---DAFGLERARQAGIATHTLIASAFDSREAYDRELIHEIDM 77 (212)
T ss_dssp CEEEEEESSCCHHHHHHHHHHHTTSSSSEEEEEEESCT---TCHHHHHHHHTTCEEEECCGGGCSSHHHHHHHHHHHHGG
T ss_pred CEEEEEEECCcHHHHHHHHHHHcCCCCceEEEEEeCCC---chHHHHHHHHcCCcEEEeCcccccchhhccHHHHHHHHh
Confidence 58999999999999999999999998999999999985 457899999999999986532 2222 467888886
Q ss_pred -CCCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCCCCCCCCChHHHHHHHh
Q 024060 122 -NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDA 200 (273)
Q Consensus 122 -~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~p~~~ai~~ 200 (273)
++|++|++|||+ |||+++++.+++++||+||||||+|||++|++||+.+
T Consensus 78 ~~~Dliv~agy~~------------------------------il~~~~l~~~~~~~iNiHpSlLP~yrG~~pi~~ai~~ 127 (212)
T 1jkx_A 78 YAPDVVVLAGFMR------------------------------ILSPAFVSHYAGRLLNIHPSLLPKYPGLHTHRQALEN 127 (212)
T ss_dssp GCCSEEEESSCCS------------------------------CCCHHHHHHTTTSEEEEESSCTTSCCSSCHHHHHHHT
T ss_pred cCCCEEEEeChhh------------------------------hCCHHHHhhccCCEEEEccCcccCCCCccHHHHHHHc
Confidence 899999999999 9999999999999999999999999999999999999
Q ss_pred CCCEeEEEEEEecCccCCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCceeecCCceeeC
Q 024060 201 GVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVVF 273 (273)
Q Consensus 201 G~~~~GvT~H~~~~~~D~G~Ii~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~i~~l~~g~~~~~~~~k~~vf 273 (273)
|++++|+|+|+|++++|+||||.|+.++|.++||.++|++|+.+.++++++++++.+.+|++.+.+ +|++++
T Consensus 128 G~~~tGvTvh~v~~~~D~G~Ii~Q~~v~I~~~dt~~~L~~rl~~~~~~ll~~~l~~~~~g~~~~~~-~~~~~~ 199 (212)
T 1jkx_A 128 GDEEHGTSVHFVTDELDGGPVILQAKVPVFAGDSEDDITARVQTQEHAIYPLVISWFADGRLKMHE-NAAWLD 199 (212)
T ss_dssp TCSEEEEEEEECCSSTTCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEET-TEEEET
T ss_pred CCCceEEEEEEEcccccCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCceEeC-CEEEEc
Confidence 999999999999999999999999999999999999999999999999999999999999999985 888764
No 9
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=100.00 E-value=1.8e-49 Score=351.58 Aligned_cols=187 Identities=31% Similarity=0.504 Sum_probs=173.7
Q ss_pred CceEEEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCC-CCch---HHHHHHHhc
Q 024060 46 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAK-ENER---EEELLELVQ 121 (273)
Q Consensus 46 ~~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~-~~~~---~~~~~~~l~ 121 (273)
|+|||||+||+||||++|++++++|.++++|++||||+ ++++++++|+++|||++.++.+ .+.+ ++++.+.++
T Consensus 2 m~riavl~Sg~Gsnl~ali~~~~~~~l~~eI~~Visn~---~~a~v~~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~ 78 (211)
T 3p9x_A 2 MKRVAIFASGSGTNAEAIIQSQKAGQLPCEVALLITDK---PGAKVVERVKVHEIPVCALDPKTYPSKEAYEIEVVQQLK 78 (211)
T ss_dssp -CEEEEECCTTCHHHHHHHHHHHTTCCSSEEEEEEESC---SSSHHHHHHHTTTCCEEECCGGGSSSHHHHHHHHHHHHH
T ss_pred CCEEEEEEeCCchHHHHHHHHHHcCCCCcEEEEEEECC---CCcHHHHHHHHcCCCEEEeChhhcCchhhhHHHHHHHHH
Confidence 58999999999999999999999999999999999987 3578999999999999877632 2223 467888886
Q ss_pred --CCCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCCCCCCCCChHHHHHHH
Q 024060 122 --NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFD 199 (273)
Q Consensus 122 --~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~p~~~ai~ 199 (273)
++|++|++|||+ |||+++++.++.|+||+||||||+|||++|++||+.
T Consensus 79 ~~~~Dliv~agy~~------------------------------Il~~~~l~~~~~~~iNiHpSLLP~yrG~~pi~~Ai~ 128 (211)
T 3p9x_A 79 EKQIDFVVLAGYMR------------------------------LVGPTLLGAYEGRIVNIHPSLLPAFPGLHAIEQAIR 128 (211)
T ss_dssp HTTCCEEEESSCCS------------------------------CCCHHHHHHHTTSEEEEESSCTTSSCSSCHHHHHHH
T ss_pred hcCCCEEEEeCchh------------------------------hcCHHHHhhccCCeEEECCccCCCCCCccHHHHHHH
Confidence 899999999999 999999999999999999999999999999999999
Q ss_pred hCCCEeEEEEEEecCccCCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCceee
Q 024060 200 AGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPY 265 (273)
Q Consensus 200 ~G~~~~GvT~H~~~~~~D~G~Ii~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~i~~l~~g~~~~~ 265 (273)
+|++++|+|+|+|++++|+||||.|+.++|.++||.++|++|+.+.++++++++++.+.+|+...+
T Consensus 129 ~G~~~tGvTvh~v~~~~D~G~Ii~Q~~v~I~~~dt~~~L~~rl~~~~~~ll~~~l~~l~~g~~~~~ 194 (211)
T 3p9x_A 129 ANVKVTGVTIHYVDEGMDTGPIIAQEAVSIEEEDTLETLTTKIQAVEHRLYPATLHKLLSKAENLY 194 (211)
T ss_dssp TTCSEEEEEEEECCSSSSCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHTCTTTCCS
T ss_pred cCCCeEEEEEEEEcCCCCCCCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcchh
Confidence 999999999999999999999999999999999999999999999999999999999999998774
No 10
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=100.00 E-value=4.4e-49 Score=348.55 Aligned_cols=192 Identities=32% Similarity=0.453 Sum_probs=174.5
Q ss_pred ceEEEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCC-CCch---HHHHHHHhc-
Q 024060 47 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAK-ENER---EEELLELVQ- 121 (273)
Q Consensus 47 ~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~-~~~~---~~~~~~~l~- 121 (273)
+|||||+||+|+||++|+++++++.++++|++|||++++ +.++++|+++|||++.++.+ .+.+ ++++.+.++
T Consensus 1 ~riaVl~SG~Gs~L~aLi~~~~~~~~~~~I~~Vvs~~~~---~~~~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~ 77 (209)
T 1meo_A 1 ARVAVLISGTGSNLQALIDSTREPNSSAQIDIVISNKAA---VAGLDKAERAGIPTRVINHKLYKNRVEFDSAIDLVLEE 77 (209)
T ss_dssp CEEEEEESSSCTTHHHHHHHHHSTTCSCEEEEEEESSTT---CHHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHH
T ss_pred CeEEEEEECCchHHHHHHHHHhcCCCCcEEEEEEeCCCC---hHHHHHHHHcCCCEEEECccccCchhhhhHHHHHHHHh
Confidence 589999999999999999999999888999999999854 46789999999999876632 2222 356777776
Q ss_pred -CCCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCCCCCCCCChHHHHHHHh
Q 024060 122 -NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDA 200 (273)
Q Consensus 122 -~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~p~~~ai~~ 200 (273)
++|++|++|||+ |||+++++.++.++||+||||||+|||++|++||+.+
T Consensus 78 ~~~Dliv~a~y~~------------------------------il~~~~l~~~~~~~iNiHpSLLP~yrG~~pi~~Ai~~ 127 (209)
T 1meo_A 78 FSIDIVCLAGFMR------------------------------ILSGPFVQKWNGKMLNIHPSLLPSFKGSNAHEQALET 127 (209)
T ss_dssp TTCCEEEEESCCS------------------------------CCCHHHHHHTTTSEEEEESSSTTSSCSSCHHHHHHHH
T ss_pred cCCCEEEEcchhh------------------------------hCCHHHHhhhcCCEEEEccCcCcCCCCccHHHHHHHc
Confidence 899999999999 9999999999999999999999999999999999999
Q ss_pred CCCEeEEEEEEecCccCCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCceeecCCcee
Q 024060 201 GVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTV 271 (273)
Q Consensus 201 G~~~~GvT~H~~~~~~D~G~Ii~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~i~~l~~g~~~~~~~~k~~ 271 (273)
|++++|+|+|+|++++|+||||.|+.++|.++||.++|++|+.+.++++++++++.+.+|++.+.++|||+
T Consensus 128 G~~~tGvTvh~v~~~~D~G~Ii~Q~~v~I~~~dt~~~L~~rl~~~~~~ll~~~l~~~~~g~~~~~~~~~~~ 198 (209)
T 1meo_A 128 GVTVTGCTVHFVAEDVDAGQIILQEAVPVKRGDTVATLSERVKLAEHKIFPAALQLVASGTVQLGENGKIC 198 (209)
T ss_dssp TCSEEEEEEEECCC---CCCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTSEEECTTSSEE
T ss_pred CCCcEEEEEEEECCCCcCCCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCceEcCCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999998878885
No 11
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=100.00 E-value=3.9e-49 Score=349.07 Aligned_cols=192 Identities=28% Similarity=0.448 Sum_probs=169.3
Q ss_pred CceEEEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCC-CCch---HHHHHHHhc
Q 024060 46 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAK-ENER---EEELLELVQ 121 (273)
Q Consensus 46 ~~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~-~~~~---~~~~~~~l~ 121 (273)
++||+||+||+|+|+++|++++++|.++++|++||||++ ++.++++|+++|||++.++.+ .+.+ ++++.+.++
T Consensus 7 ~~ri~vl~SG~gsnl~all~~~~~~~l~~~I~~Visn~~---~a~~l~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~ 83 (209)
T 4ds3_A 7 RNRVVIFISGGGSNMEALIRAAQAPGFPAEIVAVFSDKA---EAGGLAKAEAAGIATQVFKRKDFASKEAHEDAILAALD 83 (209)
T ss_dssp CEEEEEEESSCCHHHHHHHHHHTSTTCSEEEEEEEESCT---TCTHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHH
T ss_pred CccEEEEEECCcHHHHHHHHHHHcCCCCcEEEEEEECCc---ccHHHHHHHHcCCCEEEeCccccCCHHHHHHHHHHHHH
Confidence 579999999999999999999999999999999999974 346789999999999987643 1223 467888886
Q ss_pred --CCCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCCCCCCCCChHHHHHHH
Q 024060 122 --NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFD 199 (273)
Q Consensus 122 --~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~p~~~ai~ 199 (273)
++|++|++|||+ |||+++++.|++++||+||||||+|||++|++||+.
T Consensus 84 ~~~~Dliv~agy~~------------------------------il~~~~l~~~~~~~iNiHpSLLP~yrG~~pi~~Ai~ 133 (209)
T 4ds3_A 84 VLKPDIICLAGYMR------------------------------LLSGRFIAPYEGRILNIHPSLLPLFPGLHTHQRALD 133 (209)
T ss_dssp HHCCSEEEESSCCS------------------------------CCCHHHHGGGTTCEEEEESSCTTSSCSSCHHHHHHH
T ss_pred hcCCCEEEEecccc------------------------------CcCHHHHhhccCCeEEECCccccCCCChhHHHHHHH
Confidence 899999999999 999999999999999999999999999999999999
Q ss_pred hCCCEeEEEEEEecCccCCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCc---eeecCCcee
Q 024060 200 AGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRV---LPYEMNKTV 271 (273)
Q Consensus 200 ~G~~~~GvT~H~~~~~~D~G~Ii~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~i~~l~~g~~---~~~~~~k~~ 271 (273)
+|++++|+|+|+|++++|+||||.|+.++|.++||.++|++|+.+.++++++++++.+.+|++ ...+ +||.
T Consensus 134 ~G~~~tGvTvh~v~~~~D~G~Ii~Q~~v~I~~~dt~~~L~~r~~~~~~~ll~~~l~~~~~g~~~~~~~~~-~~~~ 207 (209)
T 4ds3_A 134 AGMKLAGCTVHLVTEGMDEGPILAQAAVPVLDGDTAETLAARVLKAEHRLYPLALQKFAAGEKASNQFSD-GMVL 207 (209)
T ss_dssp TTCSEEEEEEEECCC--CCCCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CCC
T ss_pred cCCCeEEEEEEEEcCCCCCCCeEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeeeeC-CEec
Confidence 999999999999999999999999999999999999999999999999999999999999999 7664 7763
No 12
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=100.00 E-value=7.4e-49 Score=348.61 Aligned_cols=193 Identities=24% Similarity=0.343 Sum_probs=175.3
Q ss_pred CCCCceEEEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCC-CCch---HHHHHH
Q 024060 43 IDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAK-ENER---EEELLE 118 (273)
Q Consensus 43 ~~~~~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~-~~~~---~~~~~~ 118 (273)
++.++||+||+||+|+||++|++++.. .++++|++|+||++ ++++++|+++|||++..+.+ ...| ++++.+
T Consensus 9 ~~~~~ri~vl~SG~gsnl~all~~~~~-~~~~eI~~Vis~~~----a~~~~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~ 83 (215)
T 3da8_A 9 PSAPARLVVLASGTGSLLRSLLDAAVG-DYPARVVAVGVDRE----CRAAEIAAEASVPVFTVRLADHPSRDAWDVAITA 83 (215)
T ss_dssp CCSSEEEEEEESSCCHHHHHHHHHSST-TCSEEEEEEEESSC----CHHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHH
T ss_pred CCCCcEEEEEEeCChHHHHHHHHHHhc-cCCCeEEEEEeCCc----hHHHHHHHHcCCCEEEeCcccccchhhhhHHHHH
Confidence 456789999999999999999999754 67799999999984 57899999999999987532 1122 457888
Q ss_pred Hhc--CCCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCCCCCCCCChHHHH
Q 024060 119 LVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQ 196 (273)
Q Consensus 119 ~l~--~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~p~~~ 196 (273)
.++ ++|++|++|||+ |||+++++.|++++||+||||||+|||++|++|
T Consensus 84 ~l~~~~~Dlivlagy~~------------------------------iL~~~~l~~~~~~~iNiHpSLLP~yrG~~pi~~ 133 (215)
T 3da8_A 84 ATAAHEPDLVVSAGFMR------------------------------ILGPQFLSRFYGRTLNTHPALLPAFPGTHGVAD 133 (215)
T ss_dssp HHHTTCCSEEEEEECCS------------------------------CCCHHHHHHHTTTEEEEESSCTTSSCSTTHHHH
T ss_pred HHHhhCCCEEEEcCchh------------------------------hCCHHHHhhccCCeEEeCcccccCCCCchHHHH
Confidence 886 899999999999 999999999999999999999999999999999
Q ss_pred HHHhCCCEeEEEEEEecCccCCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCceeecCCcee
Q 024060 197 AFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTV 271 (273)
Q Consensus 197 ai~~G~~~~GvT~H~~~~~~D~G~Ii~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~i~~l~~g~~~~~~~~k~~ 271 (273)
|+.+|++++|+|+|+|++++|+||||.|+.++|.++||.++|++|+.++++++++++++.+.+|++...+ +|++
T Consensus 134 Ai~~G~~~tGvTvh~v~~~lD~G~Ii~Q~~v~I~~~dt~~~L~~rl~~~~~~ll~~~l~~~~~g~~~~~~-~~~~ 207 (215)
T 3da8_A 134 ALAYGVKVTGATVHLVDAGTDTGPILAQQPVPVLDGDDEETLHERIKVTERRLLVAAVAALATHGVTVVG-RTAT 207 (215)
T ss_dssp HHHHTCSEEEEEEEECCSSSSCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEET-TEEE
T ss_pred HHHcCCCeEEEEEEEEcCCCCCCCEEEEEEeecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEeC-CEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999864 5543
No 13
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=100.00 E-value=1.6e-48 Score=349.39 Aligned_cols=200 Identities=29% Similarity=0.447 Sum_probs=182.6
Q ss_pred cCCCCCCceEEEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCC-CCch---HHH
Q 024060 40 VPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAK-ENER---EEE 115 (273)
Q Consensus 40 ~~~~~~~~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~-~~~~---~~~ 115 (273)
.+..+.|+||+||+||+|++++++++++.++.++++|++|||+++ +++++++|+++|||++.++.+ .+.+ +++
T Consensus 16 ~~~~~~~~rI~~l~SG~g~~~~~~l~~l~~~~~~~~I~~Vvt~~~---~~~~~~~A~~~gIp~~~~~~~~~~~r~~~~~~ 92 (229)
T 3auf_A 16 LYFQGHMIRIGVLISGSGTNLQAILDGCREGRIPGRVAVVISDRA---DAYGLERARRAGVDALHMDPAAYPSRTAFDAA 92 (229)
T ss_dssp SSCBTTCEEEEEEESSCCHHHHHHHHHHHTTSSSEEEEEEEESST---TCHHHHHHHHTTCEEEECCGGGSSSHHHHHHH
T ss_pred ccccCCCcEEEEEEeCCcHHHHHHHHHHHhCCCCCeEEEEEcCCC---chHHHHHHHHcCCCEEEECcccccchhhccHH
Confidence 445567789999999999999999999988877899999999974 467899999999999976632 2222 467
Q ss_pred HHHHhc--CCCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCCCCCCCCChH
Q 024060 116 LLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKP 193 (273)
Q Consensus 116 ~~~~l~--~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~p 193 (273)
+.+.++ ++|++|++|||+ |||+++++.|+.++||+||||||+|||++|
T Consensus 93 ~~~~l~~~~~Dliv~agy~~------------------------------IL~~~~l~~~~~~~iNiHpSLLP~yrG~~p 142 (229)
T 3auf_A 93 LAERLQAYGVDLVCLAGYMR------------------------------LVRGPMLTAFPNRILNIHPSLLPAFPGLEA 142 (229)
T ss_dssp HHHHHHHTTCSEEEESSCCS------------------------------CCCHHHHHHSTTCEEEEESSCTTSSCSSCH
T ss_pred HHHHHHhcCCCEEEEcChhH------------------------------hCCHHHHhhccCCEEEEccCcCcCCCCcCH
Confidence 788886 899999999999 999999999999999999999999999999
Q ss_pred HHHHHHhCCCEeEEEEEEecCccCCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCceeecCCceeeC
Q 024060 194 AKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVVF 273 (273)
Q Consensus 194 ~~~ai~~G~~~~GvT~H~~~~~~D~G~Ii~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~i~~l~~g~~~~~~~~k~~vf 273 (273)
++|||.+|++++|+|+|+|++++|+||||.|+.++|.++||.++|++|+.+.++++++++++.+.+|++.+.+ +||+++
T Consensus 143 i~~Ai~~G~~~tGvTvh~v~~~~D~G~Ii~Q~~v~I~~~dt~~~L~~rl~~~~~~ll~~~l~~l~~g~~~~~~-~~~~~~ 221 (229)
T 3auf_A 143 QRQALEHGVKVAGCTVHFVTAGVDEGPIILQAAVPVLEGDTVEDLRRRILAEEHRIYPEAIRLFAEGRLVIEG-RRVRIL 221 (229)
T ss_dssp HHHHHHHTCSEEEEEEEECCSSTTCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEET-TEEEEC
T ss_pred HHHHHHcCCCeEEEEEEEECCCCcCCCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEeC-CEEEEc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999975 899875
No 14
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=100.00 E-value=5.1e-48 Score=342.90 Aligned_cols=193 Identities=31% Similarity=0.474 Sum_probs=177.1
Q ss_pred CceEEEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCC-CCch---HHHHHHHhc
Q 024060 46 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAK-ENER---EEELLELVQ 121 (273)
Q Consensus 46 ~~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~-~~~~---~~~~~~~l~ 121 (273)
|+||+||+||+|++++++++++.++.++++|++|||+++ ++.++++|+++|||++.++.+ .+.+ ++++.+.++
T Consensus 1 m~rI~vl~SG~g~~~~~~l~~l~~~~~~~~i~~Vvs~~~---~~~~~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~ 77 (216)
T 2ywr_A 1 MLKIGVLVSGRGSNLQAIIDAIESGKVNASIELVISDNP---KAYAIERCKKHNVECKVIQRKEFPSKKEFEERMALELK 77 (216)
T ss_dssp CEEEEEEECSCCHHHHHHHHHHHTTSSCEEEEEEEESCT---TCHHHHHHHHHTCCEEECCGGGSSSHHHHHHHHHHHHH
T ss_pred CCEEEEEEeCCcHHHHHHHHHHHhCCCCCeEEEEEeCCC---ChHHHHHHHHcCCCEEEeCcccccchhhhhHHHHHHHH
Confidence 479999999999999999999888877789999999985 457899999999999976632 2222 467778886
Q ss_pred --CCCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCCCCCCCCChHHHHHHH
Q 024060 122 --NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFD 199 (273)
Q Consensus 122 --~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~p~~~ai~ 199 (273)
++|++|++|||+ |||+++++.+++++||+||||||+|||++|++||+.
T Consensus 78 ~~~~Dliv~a~y~~------------------------------il~~~~l~~~~~~~iNiHpSLLP~yrG~~pi~~ai~ 127 (216)
T 2ywr_A 78 KKGVELVVLAGFMR------------------------------ILSHNFLKYFPNKVINIHPSLIPAFQGLHAQKQAVE 127 (216)
T ss_dssp HTTCCEEEESSCCS------------------------------CCCHHHHTTSTTCEEEEESSCTTTTCSTTHHHHHHH
T ss_pred hcCCCEEEEeCchh------------------------------hCCHHHHhhccCCeEEEcCCcCcCCCCccHHHHHHH
Confidence 899999999999 999999999999999999999999999999999999
Q ss_pred hCCCEeEEEEEEecCccCCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCceeecCCceee
Q 024060 200 AGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVV 272 (273)
Q Consensus 200 ~G~~~~GvT~H~~~~~~D~G~Ii~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~i~~l~~g~~~~~~~~k~~v 272 (273)
+|++++|+|+|+|++++|+||||.|+.++|.++||.++|++|+.+.++++++++++.+.+|++.+.+ +||++
T Consensus 128 ~G~~~tGvTvh~v~~~~D~G~Ii~q~~~~i~~~dt~~~L~~rl~~~~~~ll~~~l~~~~~g~~~~~~-~~~~~ 199 (216)
T 2ywr_A 128 FGVKFSGCTVHIVDESVDAGPVIVQAVVPVLPEDDENTLADRILKWEHKILPQTVQWFAQDRIIIDG-RKVIV 199 (216)
T ss_dssp HTCSEEEEEEEECCSSSSCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEET-TEEEE
T ss_pred cCCCeEEEEEEEEcccCCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecC-CeeEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999886 88875
No 15
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=100.00 E-value=3.3e-47 Score=336.94 Aligned_cols=186 Identities=26% Similarity=0.470 Sum_probs=167.8
Q ss_pred CceEEEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCC-CCch---HHHHHHHhc
Q 024060 46 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAK-ENER---EEELLELVQ 121 (273)
Q Consensus 46 ~~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~-~~~~---~~~~~~~l~ 121 (273)
|+||+||+||+|+|++++++++.++.++++|++|+|+++ +++++++|+++|||++.++.+ .+.+ ++++.+.++
T Consensus 3 m~ki~vl~sG~g~~~~~~l~~l~~~~l~~~I~~Vit~~~---~~~v~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~ 79 (212)
T 3av3_A 3 MKRLAVFASGSGTNFQAIVDAAKRGDLPARVALLVCDRP---GAKVIERAARENVPAFVFSPKDYPSKAAFESEILRELK 79 (212)
T ss_dssp CEEEEEECCSSCHHHHHHHHHHHTTCCCEEEEEEEESST---TCHHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHH
T ss_pred CcEEEEEEECCcHHHHHHHHHHHhCCCCCeEEEEEeCCC---CcHHHHHHHHcCCCEEEeCcccccchhhhHHHHHHHHH
Confidence 579999999999999999999998888899999999974 468999999999999976632 1222 457777776
Q ss_pred --CCCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCCCCCCCCChHHHHHHH
Q 024060 122 --NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFD 199 (273)
Q Consensus 122 --~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~p~~~ai~ 199 (273)
++|++|++|||+ |||+++++.|++++||+||||||+|||++|++||+.
T Consensus 80 ~~~~Dliv~a~y~~------------------------------il~~~~l~~~~~~~iNiHpSLLP~yrG~~pi~~Ai~ 129 (212)
T 3av3_A 80 GRQIDWIALAGYMR------------------------------LIGPTLLSAYEGKIVNIHPSLLPAFPGKDAIGQAYR 129 (212)
T ss_dssp HTTCCEEEESSCCS------------------------------CCCHHHHHHTTTCEEEEESSCTTSSCSTTHHHHHHH
T ss_pred hcCCCEEEEchhhh------------------------------hCCHHHHhhhcCCEEEEecCcCCCCCCcCHHHHHHH
Confidence 899999999999 999999999999999999999999999999999999
Q ss_pred hCCCEeEEEEEEecCccCCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcee
Q 024060 200 AGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLP 264 (273)
Q Consensus 200 ~G~~~~GvT~H~~~~~~D~G~Ii~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~i~~l~~g~~~~ 264 (273)
+|++++|+|+|+|++++|+||||.|+.++|.++||.++|++|+.+.++++++++++.+.+|++..
T Consensus 130 ~G~~~tGvTvh~v~~~~D~G~Ii~Q~~v~I~~~dt~~~L~~r~~~~~~~ll~~~l~~~~~g~~~~ 194 (212)
T 3av3_A 130 AGVSETGVTVHYVDEGMDTGPVIAQRVVPIVPGEPIEALEERIHQVEHELYPTVLRMLLGEKEQQ 194 (212)
T ss_dssp HTCSEEEEEEEECCSSSSCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred cCCCeEEEEEEEECCCCCCCCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999887654
No 16
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* 3r8x_A
Probab=100.00 E-value=6e-43 Score=326.00 Aligned_cols=185 Identities=23% Similarity=0.309 Sum_probs=167.4
Q ss_pred CCceEEEEEECC--chhHHHHHHhhhcCCCCceEEEEeeCCCCCC-------CcHHHHHHHHcCCCEEEEcCCCCchHHH
Q 024060 45 PKYKVAVLASKQ--EHCLVDFLYGWQEGKLPVEITCVISNHDRGP-------NSHVIRFLERHGIPYHYLCAKENEREEE 115 (273)
Q Consensus 45 ~~~kiav~~Sg~--g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~-------~~~~~~~a~~~gIp~~~~~~~~~~~~~~ 115 (273)
.++||+||||+. ..||++|++. .++|++|||++|++. .++++++|+++|||++. +. +.++++
T Consensus 2 ~~mrIvf~Gt~~fa~~~L~~L~~~------~~~i~~Vvt~pd~p~grg~~~~~~~v~~~A~~~gIpv~~-~~--~~~~~~ 72 (314)
T 1fmt_A 2 ESLRIIFAGTPDFAARHLDALLSS------GHNVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKGLPVFQ-PV--SLRPQE 72 (314)
T ss_dssp CCCEEEEEECSHHHHHHHHHHHHT------TCEEEEEECCCCBC------CBCCHHHHHHHHTTCCEEC-CS--CSCSHH
T ss_pred CCCEEEEEecCHHHHHHHHHHHHC------CCcEEEEEeCCCCccccccccCcCHHHHHHHHcCCcEEe-cC--CCCCHH
Confidence 458999999998 5799999984 379999999987653 37899999999999974 32 234567
Q ss_pred HHHHhc--CCCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCCCCCCCCChH
Q 024060 116 LLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKP 193 (273)
Q Consensus 116 ~~~~l~--~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~p 193 (273)
+.+.++ ++|++|+++||+ |||+++++.+++|+||+||||||+|||++|
T Consensus 73 ~~~~l~~~~~Dliv~~~y~~------------------------------ilp~~il~~~~~g~iNiHpSLLP~yRG~~p 122 (314)
T 1fmt_A 73 NQQLVAELQADVMVVVAYGL------------------------------ILPKAVLEMPRLGCINVHGSLLPRWRGAAP 122 (314)
T ss_dssp HHHHHHHTTCSEEEEESCCS------------------------------CCCHHHHHSSTTCEEEEESSSTTTTBSSCH
T ss_pred HHHHHHhcCCCEEEEeeccc------------------------------cCCHHHHhhccCCEEEEcCCcCcCCCCcCH
Confidence 777776 899999999999 999999999999999999999999999999
Q ss_pred HHHHHHhCCCEeEEEEEEecCccCCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCceeecCC
Q 024060 194 AKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMN 268 (273)
Q Consensus 194 ~~~ai~~G~~~~GvT~H~~~~~~D~G~Ii~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~i~~l~~g~~~~~~~~ 268 (273)
++|||++|++++|+|+|+|++++|+||||.|+.++|.++||.++|++|+.+.+++++.++++.+.+|++.+.+++
T Consensus 123 i~~Ai~~G~~~tGvTih~~~~~~D~G~Ii~q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~l~~l~~g~~~~~~Q~ 197 (314)
T 1fmt_A 123 IQRSLWAGDAETGVTIMQMDVGLDTGDMLYKLSCPITAEDTSGTLYDKLAELGPQGLITTLKQLADGTAKPEVQD 197 (314)
T ss_dssp HHHHHHHTCSEEEEEEEECCSSSSCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCBCCC
T ss_pred HHHHHHcCCCceEEEEEEEcccCcCCCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCceecCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999998886543
No 17
>2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis, methyltransferase; HET: FON U5P; 1.2A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A
Probab=100.00 E-value=6.3e-43 Score=324.62 Aligned_cols=183 Identities=21% Similarity=0.272 Sum_probs=165.0
Q ss_pred ceEEEEEECC--chhHHHHHHhhhcCCCCceEEEEeeCCCCCC----CcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHh
Q 024060 47 YKVAVLASKQ--EHCLVDFLYGWQEGKLPVEITCVISNHDRGP----NSHVIRFLERHGIPYHYLCAKENEREEELLELV 120 (273)
Q Consensus 47 ~kiav~~Sg~--g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~----~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l 120 (273)
+||+||+|+. ++||++|+++ +++|++|||++|++. .++++++|+++|||++..++ .+++++.+.+
T Consensus 1 mrivf~gt~~fa~~~L~~L~~~------~~~i~~Vvt~~d~~~g~~~~~~v~~~A~~~gIpv~~~~~---~~~~~~~~~l 71 (305)
T 2bln_A 1 MKTVVFAYHDMGCLGIEALLAA------GYEISAIFTHTDNPGEKAFYGSVARLAAERGIPVYAPDN---VNHPLWVERI 71 (305)
T ss_dssp CEEEEEECHHHHHHHHHHHHHT------TCEEEEEECCCC------CCCCHHHHHHHHTCCEECCSC---CCSHHHHHHH
T ss_pred CEEEEEEcCHHHHHHHHHHHHC------CCcEEEEEcCCCCCCCCcCccHHHHHHHHcCCCEECCCc---CCcHHHHHHH
Confidence 6999999997 6899999985 489999999987653 36799999999999986442 3345677777
Q ss_pred c--CCCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCCCCCCCCChHHHHHH
Q 024060 121 Q--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAF 198 (273)
Q Consensus 121 ~--~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~p~~~ai 198 (273)
+ ++|++|+++||+ |||+++++.+++|+||+||||||+|||++|++|||
T Consensus 72 ~~~~~Dliv~~~y~~------------------------------ilp~~il~~~~~g~iNiHpSLLP~yRG~~pi~~ai 121 (305)
T 2bln_A 72 AQLSPDVIFSFYYRH------------------------------LIYDEILQLAPAGAFNLHGSLLPKYRGRAPLNWVL 121 (305)
T ss_dssp HHTCCSEEEEESCCS------------------------------CCCHHHHTTCTTCEEEEESSCTTTTEESCHHHHHH
T ss_pred HhcCCCEEEEecccc------------------------------ccCHHHHhcCcCCEEEecCCcCcCCCCccHHHHHH
Confidence 6 899999999999 99999999999999999999999999999999999
Q ss_pred HhCCCEeEEEEEEecCccCCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCceeecCC
Q 024060 199 DAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMN 268 (273)
Q Consensus 199 ~~G~~~~GvT~H~~~~~~D~G~Ii~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~i~~l~~g~~~~~~~~ 268 (273)
++|++++|+|+|+|++++|+||||.|+.++|.++||.++|++|+.+.+++++.++++.+.+|++.+.+++
T Consensus 122 ~~G~~~tGvTih~~~~~~D~G~Ii~q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~l~~l~~g~~~~~~Q~ 191 (305)
T 2bln_A 122 VNGETETGVTLHRMVKRADAGAIVAQLRIAIAPDDIAITLHHKLCHAARQLLEQTLPAIKHGNILEIAQR 191 (305)
T ss_dssp HTTCSEEEEEEEECCSSTTCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCBCCC
T ss_pred HcCCCcEEEEEEEECCCccCCCeEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCceecCC
Confidence 9999999999999999999999999999999999999999999999999999999999999998876543
No 18
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii}
Probab=100.00 E-value=9.5e-42 Score=317.99 Aligned_cols=184 Identities=21% Similarity=0.286 Sum_probs=165.2
Q ss_pred CceEEEEEECCch--hHHHHHHhhhcCCCCceEEEEeeCCCCCC-------CcHHHHHHHHcCCCEEEEcCCCCchHHHH
Q 024060 46 KYKVAVLASKQEH--CLVDFLYGWQEGKLPVEITCVISNHDRGP-------NSHVIRFLERHGIPYHYLCAKENEREEEL 116 (273)
Q Consensus 46 ~~kiav~~Sg~g~--~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~-------~~~~~~~a~~~gIp~~~~~~~~~~~~~~~ 116 (273)
++||+|+||...+ +|++|+++ .++|++|||++|++. .++++++|+++|||++. +. +.+++++
T Consensus 2 ~mrivf~Gtp~fa~~~L~~L~~~------~~~v~~Vvt~pd~~~grg~~l~~~~v~~~A~~~gIpv~~-~~--~~~~~~~ 72 (314)
T 3tqq_A 2 SLKIVFAGTPQFAVPTLRALIDS------SHRVLAVYTQPDRPSGRGQKIMESPVKEIARQNEIPIIQ-PF--SLRDEVE 72 (314)
T ss_dssp CCEEEEEECSGGGHHHHHHHHHS------SSEEEEEECCCC----------CCHHHHHHHHTTCCEEC-CS--CSSSHHH
T ss_pred CcEEEEECCCHHHHHHHHHHHHC------CCeEEEEEeCCCCccccCCccCCCHHHHHHHHcCCCEEC-cc--cCCCHHH
Confidence 4899999999764 79998874 379999999888753 57899999999999874 32 2345677
Q ss_pred HHHhc--CCCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCCCCCCCCChHH
Q 024060 117 LELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPA 194 (273)
Q Consensus 117 ~~~l~--~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~p~ 194 (273)
.+.++ ++|++|+++||+ |||+++++.+++|+||+||||||+|||++|+
T Consensus 73 ~~~l~~~~~Dliv~~~~~~------------------------------ilp~~il~~~~~g~iNiHpSlLP~yRG~~pi 122 (314)
T 3tqq_A 73 QEKLIAMNADVMVVVAYGL------------------------------ILPKKALNAFRLGCVNVHASLLPRWRGAAPI 122 (314)
T ss_dssp HHHHHTTCCSEEEEESCCS------------------------------CCCHHHHTSSTTCEEEEESSCTTTTBSSCHH
T ss_pred HHHHHhcCCCEEEEcCccc------------------------------ccCHHHHhhCcCCEEEecCccccCCCCccHH
Confidence 88886 899999999999 9999999999999999999999999999999
Q ss_pred HHHHHhCCCEeEEEEEEecCccCCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCceeecCC
Q 024060 195 KQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMN 268 (273)
Q Consensus 195 ~~ai~~G~~~~GvT~H~~~~~~D~G~Ii~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~i~~l~~g~~~~~~~~ 268 (273)
+|||.+|++++|+|+|+|++++|+||||+|+.++|.++||.++|++|+.+++++++.++++.+.+|++.+.+++
T Consensus 123 ~~Ai~~G~~~tGvTih~~~~~~D~G~Ii~q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~l~~l~~g~~~~~~Q~ 196 (314)
T 3tqq_A 123 QRAILAGDRETGISIMQMNEGLDTGDVLAKSACVISSEDTAADLHDRLSLIGADLLLESLAKLEKGDIKLEKQD 196 (314)
T ss_dssp HHHHHHTCSEEEEEEEECCSSSSCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCBCCC
T ss_pred HHHHHcCCCeeEEEEEeeecCCCCCCEEEEEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998886644
No 19
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}
Probab=100.00 E-value=5.4e-42 Score=320.18 Aligned_cols=184 Identities=20% Similarity=0.294 Sum_probs=165.4
Q ss_pred CceEEEEEECCc--hhHHHHHHhhhcCCCCceEEEEeeCCCCCC-------CcHHHHHHHHcCCCEEEEcCCCCchHHHH
Q 024060 46 KYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP-------NSHVIRFLERHGIPYHYLCAKENEREEEL 116 (273)
Q Consensus 46 ~~kiav~~Sg~g--~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~-------~~~~~~~a~~~gIp~~~~~~~~~~~~~~~ 116 (273)
++||+|+||... .||++|+++ +++|++|||++|++. .++++++|+++|||++. +. +.+++++
T Consensus 7 ~mrivf~Gt~~fa~~~L~~L~~~------~~~v~~Vvt~pd~p~grg~~~~~~~v~~~A~~~gIpv~~-~~--~~~~~~~ 77 (318)
T 3q0i_A 7 SLRIVFAGTPDFAARHLAALLSS------EHEIIAVYTQPERPAGRGKKLTASPVKTLALEHNVPVYQ-PE--NFKSDES 77 (318)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTS------SSEEEEEECCCC---------CCCHHHHHHHHTTCCEEC-CS--CSCSHHH
T ss_pred CCEEEEEecCHHHHHHHHHHHHC------CCcEEEEEcCCCCcccccccCCCCHHHHHHHHcCCCEEc-cC--cCCCHHH
Confidence 589999999874 589999874 389999999987653 47899999999999974 32 2345678
Q ss_pred HHHhc--CCCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCCCCCCCCChHH
Q 024060 117 LELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPA 194 (273)
Q Consensus 117 ~~~l~--~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~p~ 194 (273)
.+.++ ++|++|+++||+ |||+++++.+++|+||+||||||+|||++|+
T Consensus 78 ~~~l~~~~~Dliv~~~y~~------------------------------ilp~~~l~~~~~g~iNiHpSlLP~yRG~~pi 127 (318)
T 3q0i_A 78 KQQLAALNADLMVVVAYGL------------------------------LLPKVVLDTPKLGCINVHGSILPRWRGAAPI 127 (318)
T ss_dssp HHHHHTTCCSEEEESSCCS------------------------------CCCHHHHTSSTTCEEEEESSSTTTTBSSCHH
T ss_pred HHHHHhcCCCEEEEeCccc------------------------------cCCHHHHhhCcCCEEEeCCccCcCCCCcCHH
Confidence 88886 899999999999 9999999999999999999999999999999
Q ss_pred HHHHHhCCCEeEEEEEEecCccCCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCceeecCC
Q 024060 195 KQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMN 268 (273)
Q Consensus 195 ~~ai~~G~~~~GvT~H~~~~~~D~G~Ii~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~i~~l~~g~~~~~~~~ 268 (273)
+|||.+|++++|+|+|+|++++|+||||+|+.++|.++||.++|++|+.+.+++++.++++.+.+|++.+.+++
T Consensus 128 ~~Ai~~G~~~tGvTih~~~~~~D~G~Ii~q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~l~~l~~g~~~~~~Q~ 201 (318)
T 3q0i_A 128 QRSIWAGDSETGVTIMQMDVGLDTGDMLKIATLPIEASDTSASMYDKLAELGPQALLECLQDIAQGTAVAVKQD 201 (318)
T ss_dssp HHHHHHTCSEEEEEEEECCSSSSCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCBCCC
T ss_pred HHHHHcCCCeEEEEEEEEcCCCCCCCEEEEEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998886544
No 20
>3rfo_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure, cytosol; HET: PGE; 2.40A {Bacillus anthracis}
Probab=100.00 E-value=1.1e-41 Score=317.86 Aligned_cols=186 Identities=26% Similarity=0.382 Sum_probs=167.0
Q ss_pred CCCceEEEEEECCc--hhHHHHHHhhhcCCCCceEEEEeeCCCCCC-------CcHHHHHHHHcCCCEEEEcCCCCchHH
Q 024060 44 DPKYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP-------NSHVIRFLERHGIPYHYLCAKENEREE 114 (273)
Q Consensus 44 ~~~~kiav~~Sg~g--~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~-------~~~~~~~a~~~gIp~~~~~~~~~~~~~ 114 (273)
..|+||+||||... .+|++|++. +++|++|||++|++. .++++++|+++|||++. +. +.+++
T Consensus 2 ~~mmrIvf~Gtp~fa~~~L~~L~~~------~~~v~~Vvt~pd~~~gRg~~l~~~pv~~~A~~~gIpv~~-~~--~~~~~ 72 (317)
T 3rfo_A 2 NAMIKVVFMGTPDFSVPVLRRLIED------GYDVIGVVTQPDRPVGRKKVLTPTPVKVEAEKHGIPVLQ-PL--RIREK 72 (317)
T ss_dssp CTTSEEEEECCSTTHHHHHHHHHHT------TCEEEEEECCCCCEETTTTEECCCHHHHHHHHTTCCEEC-CS--CTTSH
T ss_pred CCceEEEEEeCCHHHHHHHHHHHHC------CCcEEEEEeCCCcccCCCcccCCCHHHHHHHHcCCCEEc-cc--cCCCH
Confidence 35799999999986 489999874 389999999988752 47899999999999874 32 23345
Q ss_pred HHHHHhc--CCCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCCCCCCCCCh
Q 024060 115 ELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGK 192 (273)
Q Consensus 115 ~~~~~l~--~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~ 192 (273)
+..+.++ ++|++|+++||+ |||+++++.+++|+||+||||||+|||++
T Consensus 73 ~~~~~l~~~~~Dliv~~~y~~------------------------------ilp~~~l~~~~~g~iNiHpSlLP~yRG~~ 122 (317)
T 3rfo_A 73 DEYEKVLALEPDLIVTAAFGQ------------------------------IVPNEILEAPKYGCINVHASLLPELRGGA 122 (317)
T ss_dssp HHHHHHHHHCCSEEEESSCCS------------------------------CCCHHHHHSSTTCEEEEESSCTTSSBSSC
T ss_pred HHHHHHHhcCCCEEEEcCchh------------------------------hCCHHHHhhCcCCEEEECCccCcCCCCcC
Confidence 5566675 999999999999 99999999999999999999999999999
Q ss_pred HHHHHHHhCCCEeEEEEEEecCccCCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCceeecCC
Q 024060 193 PAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMN 268 (273)
Q Consensus 193 p~~~ai~~G~~~~GvT~H~~~~~~D~G~Ii~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~i~~l~~g~~~~~~~~ 268 (273)
|++|||++|++++|+|+|+|++++|+||||+|+.++|.++||.++|++|+.+++++++.++++.+.+|++.+.+++
T Consensus 123 pi~~Ai~~G~~~tGvTih~~~~~~DtG~Ii~q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~l~~l~~g~~~~~~Q~ 198 (317)
T 3rfo_A 123 PIHYAIMEGKEKTGITIMYMVEKLDAGDILTQVEVEIEERETTGSLFDKLSEAGAHLLSKTVPLLIQGKLEPIKQN 198 (317)
T ss_dssp HHHHHHHTTCSEEEEEEEECCSSTTCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCBCCC
T ss_pred HHHHHHHcCCCceEEEEEEEcccCCCCCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998886544
No 21
>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A
Probab=100.00 E-value=2.2e-40 Score=310.45 Aligned_cols=186 Identities=17% Similarity=0.173 Sum_probs=159.5
Q ss_pred CceEEEEEECCch--hHHHHHHhhhcCCCCceEEEEeeCCCCCC-CcHHHHHHHHcCCCEEEEcCCC--CchHHHHHHHh
Q 024060 46 KYKVAVLASKQEH--CLVDFLYGWQEGKLPVEITCVISNHDRGP-NSHVIRFLERHGIPYHYLCAKE--NEREEELLELV 120 (273)
Q Consensus 46 ~~kiav~~Sg~g~--~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~-~~~~~~~a~~~gIp~~~~~~~~--~~~~~~~~~~l 120 (273)
++||+||++.+.. +|++|++ + .++|++|||.+|++. .+++.++|+++|||++..+... +..++++.+.+
T Consensus 22 ~mrIvf~G~~~fa~~~L~~L~~----~--~~~i~~Vvt~pd~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~l 95 (329)
T 2bw0_A 22 SMKIAVIGQSLFGQEVYCHLRK----E--GHEVVGVFTVPDKDGKADPLGLEAEKDGVPVFKYSRWRAKGQALPDVVAKY 95 (329)
T ss_dssp CCEEEEECCHHHHHHHHHHHHH----T--TCEEEEEEECCCCSSCCCHHHHHHHHHTCCEEECSCCEETTEECHHHHHHH
T ss_pred CCEEEEEcCcHHHHHHHHHHHH----C--CCeEEEEEeCCCcCCCCCHHHHHHHHcCCCEEecCcccccccccHHHHHHH
Confidence 4899999754322 3444443 3 379999999887642 4789999999999999765311 11236777777
Q ss_pred c--CCCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCCCCCCCCChHHHHHH
Q 024060 121 Q--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAF 198 (273)
Q Consensus 121 ~--~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~p~~~ai 198 (273)
+ ++|++|+++||+ |||+++++.+++|+||+||||||+|||++|++|||
T Consensus 96 ~~~~~Dliv~a~y~~------------------------------ilp~~il~~~~~g~iNiHpSLLP~yRG~~pi~~Ai 145 (329)
T 2bw0_A 96 QALGAELNVLPFCSQ------------------------------FIPMEIISAPRHGSIIYHPSLLPRHRGASAINWTL 145 (329)
T ss_dssp HTTCCSEEEESSCSS------------------------------CCCHHHHTCSTTCEEEEESSCTTTTBSSCHHHHHH
T ss_pred HhcCCCEEEEeehhh------------------------------hCCHHHHhhCcCCEEEEcCCcCcCCCCcCHHHHHH
Confidence 6 899999999999 99999999999999999999999999999999999
Q ss_pred HhCCCEeEEEEEEecCccCCCCeeEEEEEecCCCCCHHHHHHHH-HHHHHHHHHHHHHHHHhCCceeecC
Q 024060 199 DAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKS-EDVEKQCLAKAIKSYCELRVLPYEM 267 (273)
Q Consensus 199 ~~G~~~~GvT~H~~~~~~D~G~Ii~Q~~~~I~~~dt~~~L~~rl-~~~~~~ll~~~i~~l~~g~~~~~~~ 267 (273)
++|++++|||+|+|++++|+||||.|+.++|.++||.++|++|+ ...+.+++.++++.+.+|++.+.+|
T Consensus 146 ~~G~~~tGvTvh~~~~~lDtG~Ii~Q~~v~I~~~dt~~~L~~r~l~~~~~~ll~~~l~~l~~g~~~~~~Q 215 (329)
T 2bw0_A 146 IHGDKKGGFSIFWADDGLDTGDLLLQKECEVLPDDTVSTLYNRFLFPEGIKGMVQAVRLIAEGKAPRLPQ 215 (329)
T ss_dssp HTTCSEEEEEEEECCSSSSCSCEEEEEEEECCTTCCHHHHHHHTTTHHHHHHHHHHHHHHHHTCCCCBCC
T ss_pred HcCCCcEEEEEEEECCcCcCCCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcccC
Confidence 99999999999999999999999999999999999999999994 7899999999999999999877543
No 22
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1
Probab=100.00 E-value=4.3e-40 Score=329.84 Aligned_cols=183 Identities=21% Similarity=0.272 Sum_probs=165.4
Q ss_pred ceEEEEEECC--chhHHHHHHhhhcCCCCceEEEEeeCCCCCC----CcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHh
Q 024060 47 YKVAVLASKQ--EHCLVDFLYGWQEGKLPVEITCVISNHDRGP----NSHVIRFLERHGIPYHYLCAKENEREEELLELV 120 (273)
Q Consensus 47 ~kiav~~Sg~--g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~----~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l 120 (273)
+||+||+|+. ++||++|+++ +++|++|||+++++. .++++++|+++|||++..++ .+++++.+.+
T Consensus 1 ~ri~~~~s~~~~~~~l~~l~~~------~~~i~~v~t~~~~~~~~~~~~~~~~~a~~~~ip~~~~~~---~~~~~~~~~l 71 (660)
T 1z7e_A 1 MKTVVFAYHDMGCLGIEALLAA------GYEISAIFTHTDNPGEKAFYGSVARLAAERGIPVYAPDN---VNHPLWVERI 71 (660)
T ss_dssp CEEEEEECHHHHHHHHHHHHHT------TCEEEEEECCCC--------CCHHHHHHHHTCCEECCSC---TTSHHHHHHH
T ss_pred CEEEEEEeCHHHHHHHHHHHhC------CCCEEEEEeCCCCCccCcCccHHHHHHHHcCCCEeccCC---CCcHHHHHHH
Confidence 6999999998 7899999986 489999999987653 36799999999999987542 2345677777
Q ss_pred c--CCCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCCCCCCCCChHHHHHH
Q 024060 121 Q--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAF 198 (273)
Q Consensus 121 ~--~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~p~~~ai 198 (273)
+ ++|++|++|||+ |||+++++.+++++||+||||||+|||++|++|||
T Consensus 72 ~~~~~d~iv~~~~~~------------------------------il~~~~l~~~~~~~iNiH~slLP~~rG~~p~~~ai 121 (660)
T 1z7e_A 72 AQLSPDVIFSFYYRH------------------------------LIYDEILQLAPAGAFNLHGSLLPKYRGRAPLNWVL 121 (660)
T ss_dssp HHHCCSEEEEESCCS------------------------------CCCHHHHTTCTTCEEEEESSSTTTTCSSCHHHHHH
T ss_pred HhcCCCEEEEcCccc------------------------------ccCHHHHhcCCCCeEEecCCcCCCCCCccHHHHHH
Confidence 6 899999999999 99999999999999999999999999999999999
Q ss_pred HhCCCEeEEEEEEecCccCCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCceeecCC
Q 024060 199 DAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMN 268 (273)
Q Consensus 199 ~~G~~~~GvT~H~~~~~~D~G~Ii~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~i~~l~~g~~~~~~~~ 268 (273)
.+|++++|+|+|+|++++|+||||.|+.++|.++||.++|++|+.+.+++++.++++.+.+|++.+.+|+
T Consensus 122 ~~g~~~~G~t~~~~~~~~D~G~ii~q~~~~i~~~dt~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~q~ 191 (660)
T 1z7e_A 122 VNGETETGVTLHRMVKRADAGAIVAQLRIAIAPDDIAITLHHKLCHAARQLLEQTLPAIKHGNILEIAQR 191 (660)
T ss_dssp HTTCSEEEEEEEECCSSTTTSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCBCCC
T ss_pred HcCCCcEEEEEEEECCCccCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeeCC
Confidence 9999999999999999999999999999999999999999999999999999999999999998886543
No 23
>1zgh_A Methionyl-tRNA formyltransferase; southeast collaboratory FO structural genomics, PSI, protein structure initiative, secsg; 2.05A {Clostridium thermocellum} SCOP: b.46.1.1 c.65.1.1
Probab=99.96 E-value=2.2e-30 Score=235.68 Aligned_cols=114 Identities=16% Similarity=0.283 Sum_probs=102.7
Q ss_pred HHHHHhc--CCCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCCCCCCCCCh
Q 024060 115 ELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGK 192 (273)
Q Consensus 115 ~~~~~l~--~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~ 192 (273)
++.+.++ ++|++|++|||+ |||+++++. .|+||+||||||+|||++
T Consensus 68 ~~~~~L~~~~pDliv~~~y~~------------------------------ilp~~il~~--~g~iNiHpSLLP~yRG~~ 115 (260)
T 1zgh_A 68 LTFEKVKLINPEYILFPHWSW------------------------------IIPKEIFEN--FTCVVFHMTDLPFGRGGS 115 (260)
T ss_dssp CCHHHHHHHCCSEEEESSCCS------------------------------CCCHHHHTT--SCEEEEESSCTTTTEESC
T ss_pred HHHHHHHhcCCCEEEEecccc------------------------------ccCHHHHcc--CCEEEEeCCcCCCCCCcC
Confidence 3444554 999999999999 999999996 579999999999999999
Q ss_pred HHHHHHHhCCCEeEEEEEEecCccCCCCeeEEEEEecCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHhCCceeec
Q 024060 193 PAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEK-QCLAKAIKSYCELRVLPYE 266 (273)
Q Consensus 193 p~~~ai~~G~~~~GvT~H~~~~~~D~G~Ii~Q~~~~I~~~dt~~~L~~rl~~~~~-~ll~~~i~~l~~g~~~~~~ 266 (273)
|++|||.+|++++|||+|+|++++|+||||+|+.++|. ||.++|++|+.++++ +++.+++ +|++.+.+
T Consensus 116 pi~~Ai~~G~~~tGvTih~~~~~lDtG~Ii~Q~~v~I~--dt~~~L~~rl~~~~~~~ll~~~~----~g~~~~~p 184 (260)
T 1zgh_A 116 PLQNLIERGIKKTKISAIKVDGGIDTGDIFFKRDLDLY--GTAEEIFMRASKIIFNDMIPELL----TKRPVPQK 184 (260)
T ss_dssp HHHHHHHTTCCEEEEEEEECCSSSSCSCEEEEEEEECC--SCHHHHHHHHHHHHHHTHHHHHH----HHCCCCBC
T ss_pred HHHHHHHcCCCcEEEEEEEEccCccCCCeEEEEEEecc--CCHHHHHHHHHHHHHHHHHHHHH----cCCCccee
Confidence 99999999999999999999999999999999999999 899999999999999 8876654 66776654
No 24
>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A
Probab=94.85 E-value=0.21 Score=45.92 Aligned_cols=120 Identities=16% Similarity=0.217 Sum_probs=69.5
Q ss_pred CceEEEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHH----HHHHHcCCCEEEEcCCCCchHHHHHHHhc
Q 024060 46 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVI----RFLERHGIPYHYLCAKENEREEELLELVQ 121 (273)
Q Consensus 46 ~~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~----~~a~~~gIp~~~~~~~~~~~~~~~~~~l~ 121 (273)
..||+++|-+.......++.++.. ++.++. +++.+.-.++..+. +.|++.|..+....+ +.+.++
T Consensus 148 gl~va~vGD~~~rva~Sl~~~~~~--~g~~v~-~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~~~d--------~~eav~ 216 (307)
T 2i6u_A 148 GLRLSYFGDGANNMAHSLLLGGVT--AGIHVT-VAAPEGFLPDPSVRAAAERRAQDTGASVTVTAD--------AHAAAA 216 (307)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHHH--TTCEEE-EECCTTSCCCHHHHHHHHHHHHHHTCCEEEESC--------HHHHHT
T ss_pred CeEEEEECCCCcCcHHHHHHHHHH--CCCEEE-EECCccccCCHHHHHHHHHHHHHcCCeEEEEEC--------HHHHhc
Confidence 478888877522223444444322 346653 33333211233343 345588877765431 345667
Q ss_pred CCCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCCCCCCCCC
Q 024060 122 NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG 191 (273)
Q Consensus 122 ~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~ 191 (273)
++|+|..-.|.+. ...-+..........|-+..+.++..+..++-+|| ||.+||.
T Consensus 217 ~aDvvy~~~w~sm-------------g~~~~~~~~~~~~~~y~v~~~~l~~a~~~ai~mH~--lP~~Rg~ 271 (307)
T 2i6u_A 217 GADVLVTDTWTSM-------------GQENDGLDRVKPFRPFQLNSRLLALADSDAIVLHC--LPAHRGD 271 (307)
T ss_dssp TCSEEEECCSSCT-------------TCTTSCCCSSGGGGGGCBCHHHHHHSCTTCEEEEC--SCCCBTT
T ss_pred CCCEEEecceecC-------------CcccchHHHHHHHhhcCCCHHHHhhcCCCcEEECC--CCCCCCc
Confidence 9999988787441 01111122222233488999999998888999998 5999873
No 25
>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*
Probab=94.78 E-value=0.027 Score=52.85 Aligned_cols=55 Identities=16% Similarity=0.324 Sum_probs=35.4
Q ss_pred CCCCCceEEEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEE
Q 024060 42 DIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYH 103 (273)
Q Consensus 42 ~~~~~~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~ 103 (273)
+.+++.||+|+|+|-|.. -+.++.+-.-.+++++|++.. .....++|+++|+|++
T Consensus 3 ~~~~~~rv~VvG~G~g~~---h~~a~~~~~~~~elvav~~~~----~~~a~~~a~~~gv~~~ 57 (372)
T 4gmf_A 3 SASPKQRVLIVGAKFGEM---YLNAFMQPPEGLELVGLLAQG----SARSRELAHAFGIPLY 57 (372)
T ss_dssp ----CEEEEEECSTTTHH---HHHTTSSCCTTEEEEEEECCS----SHHHHHHHHHTTCCEE
T ss_pred CCCCCCEEEEEehHHHHH---HHHHHHhCCCCeEEEEEECCC----HHHHHHHHHHhCCCEE
Confidence 456789999999986642 333333221147899888654 2456889999999975
No 26
>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1
Probab=93.62 E-value=0.29 Score=45.32 Aligned_cols=120 Identities=13% Similarity=0.213 Sum_probs=66.2
Q ss_pred CceEEEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHH----HHHHHcCCCEEEEcCCCCchHHHHHHHhc
Q 024060 46 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVI----RFLERHGIPYHYLCAKENEREEELLELVQ 121 (273)
Q Consensus 46 ~~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~----~~a~~~gIp~~~~~~~~~~~~~~~~~~l~ 121 (273)
..||+++|-+.......++.++.. ++.++. +++.+.=.++..+. +.|++.|..+.... ++.+.++
T Consensus 167 gl~va~vGD~~~rva~Sl~~~~~~--~G~~v~-~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~--------d~~eav~ 235 (325)
T 1vlv_A 167 GVKVVFMGDTRNNVATSLMIACAK--MGMNFV-ACGPEELKPRSDVFKRCQEIVKETDGSVSFTS--------NLEEALA 235 (325)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHHH--TTCEEE-EESCGGGCCCHHHHHHHHHHHHHHCCEEEEES--------CHHHHHT
T ss_pred CcEEEEECCCCcCcHHHHHHHHHH--CCCEEE-EECCccccCCHHHHHHHHHHHHHcCCeEEEEc--------CHHHHHc
Confidence 478888876522233444444322 345653 33332111222343 34457887665543 1345567
Q ss_pred CCCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhc-CCCeeEeecCCCCCCCCC
Q 024060 122 NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSY-GKDVINIHHGLLPSFKGG 191 (273)
Q Consensus 122 ~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~-~~~~iNiHpslLP~yRG~ 191 (273)
++|+|..-.|.+. .+.-+..........|-+..+.++.. +..++-+|| ||.+||.
T Consensus 236 ~aDvvyt~~w~sm-------------g~~~~~~~~~~~~~~y~v~~ell~~a~k~dai~mH~--LP~~Rg~ 291 (325)
T 1vlv_A 236 GADVVYTDVWASM-------------GEEDKEKERMALLKPYQVNERVMEMTGKSETIFMHC--LPAVKGQ 291 (325)
T ss_dssp TCSEEEECCCC-----------------------CHHHHGGGCBCHHHHHTTCCTTCEEEEC--SCCCBTT
T ss_pred cCCEEEecccccc-------------ccccchHhHHHHHhhcCCCHHHHHhccCCCeEEECC--CCCCCCc
Confidence 9999988777431 00001111112223478999999988 778999998 5999884
No 27
>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A
Probab=93.62 E-value=0.3 Score=45.05 Aligned_cols=119 Identities=13% Similarity=0.253 Sum_probs=66.7
Q ss_pred CceEEEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHH----HHHHHcCCCEEEEcCCCCchHHHHHHHhc
Q 024060 46 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVI----RFLERHGIPYHYLCAKENEREEELLELVQ 121 (273)
Q Consensus 46 ~~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~----~~a~~~gIp~~~~~~~~~~~~~~~~~~l~ 121 (273)
..||+++|-+ +.....++.++.. ++.++. +++.+.-.++..+. +.|++.|..+.... ++.+.++
T Consensus 155 gl~va~vGD~-~rva~Sl~~~~~~--~g~~v~-~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~~~--------d~~eav~ 222 (315)
T 1pvv_A 155 GVKVVYVGDG-NNVAHSLMIAGTK--LGADVV-VATPEGYEPDEKVIKWAEQNAAESGGSFELLH--------DPVKAVK 222 (315)
T ss_dssp TCEEEEESCC-CHHHHHHHHHHHH--TTCEEE-EECCTTCCCCHHHHHHHHHHHHHHTCEEEEES--------CHHHHTT
T ss_pred CcEEEEECCC-cchHHHHHHHHHH--CCCEEE-EECCccccCCHHHHHHHHHHHHHcCCeEEEEe--------CHHHHhC
Confidence 4788887765 2223444444322 245653 33332211223343 34457887665443 1345677
Q ss_pred CCCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCCCCCCCCC
Q 024060 122 NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG 191 (273)
Q Consensus 122 ~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~ 191 (273)
++|+|..-.|.+. + ..-+........-.|-+..+.++..+..++-+|| ||.+||.
T Consensus 223 ~aDvvy~~~w~sm---g----------~~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mH~--lP~~Rg~ 277 (315)
T 1pvv_A 223 DADVIYTDVWASM---G----------QEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHC--LPAHRGE 277 (315)
T ss_dssp TCSEEEECCCCCS---S----------TTSSSSHHHHHHGGGCBCHHHHHTSCTTCEEEEC--SCCCBTT
T ss_pred CCCEEEEcceecc---C----------cccchHHHHHHHHhcCCCHHHHhhcCCCcEEECC--CCCCCCC
Confidence 9999988787431 0 0001111111222478999999988888999998 5999873
No 28
>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}
Probab=93.01 E-value=0.54 Score=43.49 Aligned_cols=119 Identities=16% Similarity=0.246 Sum_probs=67.4
Q ss_pred CCceEEEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHH----HHHHcCCCEEEEcCCCCchHHHHHHHh
Q 024060 45 PKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIR----FLERHGIPYHYLCAKENEREEELLELV 120 (273)
Q Consensus 45 ~~~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~----~a~~~gIp~~~~~~~~~~~~~~~~~~l 120 (273)
...||+++|-+ +.....++.++.. ++.++. +++.+.-.++..+.+ .|++.|..+....+ +.+.+
T Consensus 156 ~glkva~vGD~-~rva~Sl~~~~~~--~G~~v~-~~~P~~~~~~~~~~~~~~~~a~~~g~~v~~~~d--------~~eav 223 (323)
T 3gd5_A 156 AGLKLAYVGDG-NNVAHSLLLGCAK--VGMSIA-VATPEGFTPDPAVSARASEIAGRTGAEVQILRD--------PFEAA 223 (323)
T ss_dssp TTCEEEEESCC-CHHHHHHHHHHHH--HTCEEE-EECCTTCCCCHHHHHHHHHHHHHHTCCEEEESC--------HHHHH
T ss_pred CCCEEEEECCC-CcHHHHHHHHHHH--cCCEEE-EECCCcccCCHHHHHHHHHHHHHcCCeEEEECC--------HHHHh
Confidence 35789888765 3223344443322 235543 333332122333433 44567877765431 34566
Q ss_pred cCCCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCCCCCCCC
Q 024060 121 QNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKG 190 (273)
Q Consensus 121 ~~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG 190 (273)
+++|+|..-.|.. +.+ ..+.......+-.|-+..+.++..+..++-+||. |.+||
T Consensus 224 ~~aDvvyt~~wqs------~g~-------~~~~~~~~~~~~~y~vt~ell~~ak~dai~mHcl--Pa~Rg 278 (323)
T 3gd5_A 224 RGAHILYTDVWTS------MGQ-------EAETQHRLQLFEQYQINAALLNCAAAEAIVLHCL--PAHRG 278 (323)
T ss_dssp TTCSEEEECCCC----------------------CCHHHHTTCCBCHHHHHTSCTTCEEEECS--CCCBT
T ss_pred cCCCEEEEeceec------CCC-------cccchHHHHHhhccCCCHHHHhhcCCCcEEECCC--CCCCC
Confidence 7999998877744 111 0011122333345899999999888889999995 89988
No 29
>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}
Probab=92.51 E-value=0.57 Score=43.69 Aligned_cols=118 Identities=14% Similarity=0.203 Sum_probs=65.6
Q ss_pred CCceEEEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHH----HHHHHcCCCEEEEcCCCCchHHHHHHHh
Q 024060 45 PKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVI----RFLERHGIPYHYLCAKENEREEELLELV 120 (273)
Q Consensus 45 ~~~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~----~~a~~~gIp~~~~~~~~~~~~~~~~~~l 120 (273)
...||+++|-++ .....++.++.. +++++. +++.+.-.++..+. ++|++.|..+....+ +.+.+
T Consensus 178 ~glkva~vGD~~-nva~Sl~~~~~~--~G~~v~-~~~P~~~~~~~~~~~~~~~~a~~~G~~v~~~~d--------~~eav 245 (340)
T 4ep1_A 178 KGIKLAYVGDGN-NVCHSLLLASAK--VGMHMT-VATPVGYRPNEEIVKKALAIAKETGAEIEILHN--------PELAV 245 (340)
T ss_dssp TTCEEEEESCCC-HHHHHHHHHHHH--HTCEEE-EECCTTCCCCHHHHHHHHHHHHHHCCCEEEESC--------HHHHH
T ss_pred CCCEEEEECCCc-hhHHHHHHHHHH--cCCEEE-EECCcccCCCHHHHHHHHHHHHHcCCeEEEECC--------HHHHh
Confidence 347888887552 223334443321 235543 33333211233333 344577877765431 34566
Q ss_pred cCCCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCCCCCCCC
Q 024060 121 QNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKG 190 (273)
Q Consensus 121 ~~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG 190 (273)
+++|+|..-.|.. +.+-+ + ..++..+-.|.+..+.++..+..++-+||. |.+||
T Consensus 246 ~~aDVvyt~~w~s------mg~e~-------~-~~~~~~~~~y~vt~ell~~ak~dai~MHcL--Pa~Rg 299 (340)
T 4ep1_A 246 NEADFIYTDVWMS------MGQEG-------E-EEKYTLFQPYQINKELVKHAKQTYHFLHCL--PAHRE 299 (340)
T ss_dssp TTCSEEEECCC------------C-------H-HHHHHHHGGGCBCHHHHTTSCTTCEEEECS--CCCBT
T ss_pred CCCCEEEecCccC------CCCCc-------h-HHHHHHhccccCCHHHHHhcCCCcEEECCC--CCCCC
Confidence 7899998877743 11111 0 112223345889999999888889999995 89987
No 30
>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}
Probab=92.16 E-value=0.5 Score=43.38 Aligned_cols=118 Identities=15% Similarity=0.230 Sum_probs=64.8
Q ss_pred CceEEEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHH----HHHHcCCCEEEEcCCCCchHHHHHHHhc
Q 024060 46 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIR----FLERHGIPYHYLCAKENEREEELLELVQ 121 (273)
Q Consensus 46 ~~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~----~a~~~gIp~~~~~~~~~~~~~~~~~~l~ 121 (273)
..||+++|-++ .....++.++.. ++.++. +++.+.-.++..+.+ .|++.|..+....+ +.+.++
T Consensus 146 gl~va~vGD~~-~va~Sl~~~~~~--~G~~v~-~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~~~d--------~~eav~ 213 (307)
T 3tpf_A 146 IAKVAFIGDSN-NMCNSWLITAAI--LGFEIS-IAMPKNYKISPEIWEFAMKQALISGAKISLGYD--------KFEALK 213 (307)
T ss_dssp CCEEEEESCSS-HHHHHHHHHHHH--HTCEEE-EECCTTCCCCHHHHHHHHHHHHHHTCEEEEESC--------HHHHHT
T ss_pred CCEEEEEcCCC-ccHHHHHHHHHH--cCCEEE-EECCCccCCCHHHHHHHHHHHHHcCCeEEEEcC--------HHHHhc
Confidence 56788877542 122333333221 234543 333322112333433 34477776655331 344567
Q ss_pred CCCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCCCCCCCC
Q 024060 122 NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKG 190 (273)
Q Consensus 122 ~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG 190 (273)
++|+|..-.|.. .+.+.. .......+..|.+..+.++..+..++-+||. |.+||
T Consensus 214 ~aDvvyt~~w~s---mg~e~~----------~~~~~~~~~~y~v~~e~l~~a~~~ai~mH~l--Pa~Rg 267 (307)
T 3tpf_A 214 DKDVVITDTWVS---MGEENE----------KERKIKEFEGFMIDEKAMSVANKDAILLHCL--PAYRG 267 (307)
T ss_dssp TCSEEEECCSSC---TTGGGG----------HHHHHHHTGGGCBCHHHHHHSCTTCEEEECS--CCCBT
T ss_pred CCCEEEecCccc---CCchhh----------HHHHHHHhcccccCHHHHHhcCCCcEEECCC--CCCCC
Confidence 899999888743 111100 0011122334899999999988899999995 89987
No 31
>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}
Probab=91.04 E-value=0.62 Score=43.16 Aligned_cols=120 Identities=17% Similarity=0.201 Sum_probs=67.4
Q ss_pred CceEEEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCC--CCcHHHHH----HHH--cCCCEEEEcCCCCchHHHHH
Q 024060 46 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRG--PNSHVIRF----LER--HGIPYHYLCAKENEREEELL 117 (273)
Q Consensus 46 ~~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~--~~~~~~~~----a~~--~gIp~~~~~~~~~~~~~~~~ 117 (273)
..||+++|-+.......++.++.. ++.++. +++.+.-. ++..+.+. |++ .|..+.... ++.
T Consensus 161 gl~va~vGD~~~~va~Sl~~~~~~--~G~~v~-~~~P~~~~~~p~~~~~~~~~~~~~~~~~g~~v~~~~--------d~~ 229 (328)
T 3grf_A 161 GIKFAYCGDSMNNVTYDLMRGCAL--LGMECH-VCCPDHKDFKPIKEVIDECEEIIAKHGTGGSIKIFH--------DCK 229 (328)
T ss_dssp GCCEEEESCCSSHHHHHHHHHHHH--HTCEEE-EECCSSGGGSCCHHHHHHHHHHHHHHTCCCEEEEES--------SHH
T ss_pred CcEEEEeCCCCcchHHHHHHHHHH--cCCEEE-EECChHhhhCCCHHHHHHHHHHHhhccCCCeEEEEc--------CHH
Confidence 478999987633334445544322 235653 34433211 22234443 444 677766543 134
Q ss_pred HHhcCCCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCCCCCCCC
Q 024060 118 ELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKG 190 (273)
Q Consensus 118 ~~l~~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG 190 (273)
+.++++|+|..-.|..+ -.|+|++ ......+..|.+..+.++..+..++-+||. |.+||
T Consensus 230 eav~~aDvvytd~W~sm-~iq~er~-----------~~~~~~~~~y~vt~~~l~~a~~~ai~mH~l--Pa~Rg 288 (328)
T 3grf_A 230 KGCEGVDVVYTDSWMSY-HITKEQK-----------EARLKVLTPFQVDDAVMAVTSKRSIFMNCL--PATRG 288 (328)
T ss_dssp HHHTTCSEEEECCCC---------C-----------CTHHHHHGGGCBCHHHHTTSCTTCEEEECS--CCCTT
T ss_pred HHhcCCCEEEecCcccc-CCcHHHH-----------HHHHHHhcCCCCCHHHHHhcCCCCEEECCC--CCCCC
Confidence 56779999987666320 0122322 122333445899999999988889999994 89988
No 32
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=90.89 E-value=0.85 Score=42.32 Aligned_cols=80 Identities=4% Similarity=-0.042 Sum_probs=48.8
Q ss_pred CeeEEEEEEcCCCCCChHhHHHHHHHHHHHhcccccccccCCC----CCC-ceEEEEEEC--CchhHHHHHHhhhcCCCC
Q 024060 1 MIKMCIEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDI----DPK-YKVAVLASK--QEHCLVDFLYGWQEGKLP 73 (273)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~l~~~f~~l~~~~~~~~~~~r~~~~----~~~-~kiav~~Sg--~g~~l~~ll~~~~~~~l~ 73 (273)
.|+||++|+.+....+.+.|+++|..++.++ .|.+..+.... ++. .-+..+.+. ++..+.++...+.+..++
T Consensus 51 ~f~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~llg~~~~~~~~~~i~~~l~~~~~N 129 (415)
T 3p96_A 51 RLTLGVLVCCPADVADGPALRHDVEAAIRKV-GLDVSIERSDDVPIIREPSTHTIFVLGRPITAAAFGAVAREVAALGVN 129 (415)
T ss_dssp EEEEEEEEEECHHHHTSHHHHHHHHHHHHHT-TCEEEEEECSSSCSSCCCCSEEEEEEESSCCHHHHHHHHHHHHHTTCE
T ss_pred EeEEEEEEEecCCcCCHHHHHHHHHHHHHHc-CeEEEEEECCcccccCCCCcEEEEEEeCCCCHHHHHHHHHHHHHcCCC
Confidence 3899999998765446789999999999998 45543332111 122 223333333 356677776666555555
Q ss_pred ceEEEEee
Q 024060 74 VEITCVIS 81 (273)
Q Consensus 74 ~~i~~Vvs 81 (273)
++-..-++
T Consensus 130 i~~l~~~~ 137 (415)
T 3p96_A 130 IDLIRGVS 137 (415)
T ss_dssp EEEEEEEE
T ss_pred ccceeecc
Confidence 44444444
No 33
>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A
Probab=90.57 E-value=0.58 Score=43.49 Aligned_cols=116 Identities=15% Similarity=0.225 Sum_probs=61.9
Q ss_pred ceEEEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHH----HHHHHcCCCEEEEcCCCCchHHHHHHHhcC
Q 024060 47 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVI----RFLERHGIPYHYLCAKENEREEELLELVQN 122 (273)
Q Consensus 47 ~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~----~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~ 122 (273)
.||+++|-+.......++.++.. ++.++. +++.+.-.++..+. +.|++.|..+.... ++.+.+++
T Consensus 156 l~va~vGD~~~~va~Sl~~~~~~--~G~~v~-~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~--------d~~eav~~ 224 (335)
T 1dxh_A 156 ISYAYLGDARNNMGNSLLLIGAK--LGMDVR-IAAPKALWPHDEFVAQCKKFAEESGAKLTLTE--------DPKEAVKG 224 (335)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHH--TTCEEE-EECCGGGSCCHHHHHHHHHHHHHHTCEEEEES--------CHHHHTTT
T ss_pred eEEEEecCCccchHHHHHHHHHH--cCCEEE-EECCcccCCCHHHHHHHHHHHHHcCCeEEEEe--------CHHHHhCC
Confidence 67777776522223334444322 235543 33322111222233 34447776665432 13455678
Q ss_pred CCEEEEEeecCCcchhhHhhhhhhhhhhhc-ccCcccccccccCChhHHhhc-CCCeeEeecCCCCCC
Q 024060 123 TDFLVLARYMQPVPLQKEAYLGYKLLESLS-SKGSLTSYFNMILSGKFLRSY-GKDVINIHHGLLPSF 188 (273)
Q Consensus 123 ~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~y~~~il~~~~l~~~-~~~~iNiHpslLP~y 188 (273)
+|+|..-.|.++ + +..+ ...+....-.|-+..+.++.. +..++-+|| ||++
T Consensus 225 aDvvytd~w~sm---g----------~~~e~~~er~~~~~~y~v~~~ll~~a~~~~ai~mHc--LP~~ 277 (335)
T 1dxh_A 225 VDFVHTDVWVSM---G----------EPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHC--LPAF 277 (335)
T ss_dssp CSEEEECCCSCS---S----------SCGGGCHHHHHHHGGGCBCHHHHHTTCCSSCEEEEC--SCCC
T ss_pred CCEEEeCCcccc---C----------ccchhhHHHHHHhhcceeCHHHHHhccCCCeEEECC--CCCC
Confidence 999988787431 0 0001 111112223478999999988 778999999 4887
No 34
>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*
Probab=90.54 E-value=0.59 Score=43.41 Aligned_cols=117 Identities=11% Similarity=0.180 Sum_probs=64.6
Q ss_pred CceEEEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHH----HHHHHcCCCEEEEcCCCCchHHHHHHHhc
Q 024060 46 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVI----RFLERHGIPYHYLCAKENEREEELLELVQ 121 (273)
Q Consensus 46 ~~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~----~~a~~~gIp~~~~~~~~~~~~~~~~~~l~ 121 (273)
..||+++|-+.......++.++.. ++.++. +++.+.-.++..+. +.|++.|..+.... ++.+.++
T Consensus 155 gl~ia~vGD~~~~va~Sl~~~~~~--~G~~v~-~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~--------d~~eav~ 223 (333)
T 1duv_G 155 EMTLVYAGDARNNMGNSMLEAAAL--TGLDLR-LVAPQACWPEAALVTECRALAQQNGGNITLTE--------DVAKGVE 223 (333)
T ss_dssp GCEEEEESCTTSHHHHHHHHHHHH--HCCEEE-EECCGGGCCCHHHHHHHHHHHHHTTCEEEEES--------CHHHHHT
T ss_pred CcEEEEECCCccchHHHHHHHHHH--cCCEEE-EECCcccCCCHHHHHHHHHHHHHcCCeEEEEE--------CHHHHhC
Confidence 378888876522223344443321 235553 33332111223343 44558887765543 1345667
Q ss_pred CCCEEEEEeecCCcchhhHhhhhhhhhhhhc-ccCcccccccccCChhHHhhc-CCCeeEeecCCCCCC
Q 024060 122 NTDFLVLARYMQPVPLQKEAYLGYKLLESLS-SKGSLTSYFNMILSGKFLRSY-GKDVINIHHGLLPSF 188 (273)
Q Consensus 122 ~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~y~~~il~~~~l~~~-~~~~iNiHpslLP~y 188 (273)
++|+|..-.|.++ + +..+ .+.+......|-+..+.++.. +..++-+|| ||++
T Consensus 224 ~aDvvytd~w~sm---g----------~~~~~~~er~~~~~~y~v~~~ll~~a~~~~ai~mHc--LP~~ 277 (333)
T 1duv_G 224 GADFIYTDVWVSM---G----------EAKEKWAERIALLREYQVNSKMMQLTGNPEVKFLHC--LPAF 277 (333)
T ss_dssp TCSEEEECCSSCT---T----------SCTTHHHHHHHHHGGGCBCHHHHHTTCCTTCEEEEC--SCCC
T ss_pred CCCEEEeCCcccc---C----------ccccchHHHHHHhhccccCHHHHHhccCCCcEEECC--CCCC
Confidence 9999988787441 0 0000 111112223478999999988 778999999 4887
No 35
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=89.05 E-value=1.7 Score=38.42 Aligned_cols=79 Identities=14% Similarity=0.121 Sum_probs=47.2
Q ss_pred CceEEEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCC---------CCcHHHHHHHHcCCCEEEEcCCCC--chHH
Q 024060 46 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRG---------PNSHVIRFLERHGIPYHYLCAKEN--EREE 114 (273)
Q Consensus 46 ~~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~---------~~~~~~~~a~~~gIp~~~~~~~~~--~~~~ 114 (273)
.||++++.||+--+..++..+.+.| ++|+++++..+.. .-..+...|+..|||.+.++-+.. ...+
T Consensus 4 ~MKvvvl~SGGkDSs~al~~l~~~G---~eV~~L~~~~~~~~~s~~~h~~~~e~a~~~A~~LGIpl~~v~~~g~~~~e~e 80 (237)
T 3rjz_A 4 LADVAVLYSGGKDSNYALYWAIKNR---FSVKFLVTMVSENEESYMYHTINANLTDLQARALGIPLVKGFTQGEKEKEVE 80 (237)
T ss_dssp CSEEEEECCSSHHHHHHHHHHHHTT---CEEEEEEEEECC--------CCSSSHHHHHHHHHTCCEEEEEC------CHH
T ss_pred CCEEEEEecCcHHHHHHHHHHHHcC---CeEEEEEEEcCCCCCccccCCccHHHHHHHHHHcCCCEEEEECCCCchHHHH
Confidence 3799999999743333333344444 7888876533211 123467889999999998874321 1134
Q ss_pred HHHHHhc--CCCEEE
Q 024060 115 ELLELVQ--NTDFLV 127 (273)
Q Consensus 115 ~~~~~l~--~~Dlvv 127 (273)
++.+.++ +++.++
T Consensus 81 ~l~~~l~~~~i~~vv 95 (237)
T 3rjz_A 81 DLKRVLSGLKIQGIV 95 (237)
T ss_dssp HHHHHHTTSCCSEEE
T ss_pred HHHHHHHhcCCcEEE
Confidence 5666665 566665
No 36
>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A
Probab=88.96 E-value=0.69 Score=43.55 Aligned_cols=119 Identities=14% Similarity=0.248 Sum_probs=63.1
Q ss_pred CceEEEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCC--CcHHH----HHHHHcCCCEEEEcCCCCchHHHHHHH
Q 024060 46 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGP--NSHVI----RFLERHGIPYHYLCAKENEREEELLEL 119 (273)
Q Consensus 46 ~~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~--~~~~~----~~a~~~gIp~~~~~~~~~~~~~~~~~~ 119 (273)
..|||++|-+.......++.++.. ++.++. +++.+.-.+ +..+. ++|++.|..+.... ++.+.
T Consensus 180 glkva~vGD~~nnva~Sl~~~~~~--lG~~v~-~~~P~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~--------d~~ea 248 (365)
T 4amu_A 180 NKKIVFIGDYKNNVGVSTMIGAAF--NGMHVV-MCGPDNYKNEIDKNVLAKCIELFKRNGGSLRFST--------DKILA 248 (365)
T ss_dssp TCEEEEESSTTSHHHHHHHHHHHH--TTCEEE-EESCGGGGGGSCHHHHHHHHHHHHHHSCEEEEES--------CHHHH
T ss_pred CCEEEEECCCCcchHHHHHHHHHH--cCCEEE-EECCccccCCCcHHHHHHHHHHHHHcCCEEEEEC--------CHHHH
Confidence 477887775522223444444322 235543 233221111 22232 34566676665433 13456
Q ss_pred hcCCCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCCCCCCC
Q 024060 120 VQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFK 189 (273)
Q Consensus 120 l~~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yR 189 (273)
++++|+|..-.|..+--. .+.| +.+...+..|.+..++++..+..++-+|| ||++|
T Consensus 249 v~~aDVVytd~W~smg~~-~~~~-----------~er~~~~~~y~vt~ell~~a~~dai~MHc--LP~~R 304 (365)
T 4amu_A 249 AQDADVIYTDVWVSLGEP-FELF-----------DKRIGELKNFQVDMNMIKAAKNDVIFLHC--LPAFH 304 (365)
T ss_dssp TTTCSEEEECCSCCTTCC-HHHH-----------HHHHHHHTTCCBCHHHHHHSCTTCEEEEC--SCCCC
T ss_pred hcCCCEEEecccccCCch-hhhH-----------HHHHHHhcccccCHHHHHhcCCCcEEECC--CCCCC
Confidence 678999987655331100 0000 11112223478999999988888999999 59998
No 37
>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...
Probab=88.95 E-value=1.3 Score=40.65 Aligned_cols=113 Identities=13% Similarity=0.188 Sum_probs=59.9
Q ss_pred CceEEEEEECC-chhHHHHHHhhhcCCC-CceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCC
Q 024060 46 KYKVAVLASKQ-EHCLVDFLYGWQEGKL-PVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 123 (273)
Q Consensus 46 ~~kiav~~Sg~-g~~l~~ll~~~~~~~l-~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~ 123 (273)
..||+++|-+. +.....++.++. .+ +.++. +++.+.-.++..+.+.|++.|..+....+ +.+.++++
T Consensus 154 gl~va~vGD~~~~rva~Sl~~~~~--~~~g~~v~-~~~P~~~~~~~~~~~~~~~~g~~~~~~~d--------~~eav~~a 222 (310)
T 3csu_A 154 NLHVAMVGDLKYGRTVHSLTQALA--KFDGNRFY-FIAPDALAMPQYILDMLDEKGIAWSLHSS--------IEEVMAEV 222 (310)
T ss_dssp SCEEEEESCTTTCHHHHHHHHHHH--TSSSCEEE-EECCGGGCCCHHHHHHHHHTTCCEEECSC--------GGGTTTTC
T ss_pred CcEEEEECCCCCCchHHHHHHHHH--hCCCCEEE-EECCcccccCHHHHHHHHHcCCeEEEEcC--------HHHHhcCC
Confidence 37788877653 233444555432 23 35543 33332111234466777888877654321 22345689
Q ss_pred CEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCC
Q 024060 124 DFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGL 184 (273)
Q Consensus 124 Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpsl 184 (273)
|+|..-.|.. |++ +..........|-+..+.++..+..++-+||.+
T Consensus 223 Dvvyt~~~q~------er~---------~~~~~~~~~~~y~v~~~ll~~a~~~ai~mH~lP 268 (310)
T 3csu_A 223 DILYMTRVQK------ERL---------DPSEYANVKAQFVLRASDLHNAKANMKVLHPLP 268 (310)
T ss_dssp SEEEECC--------------------------------CCBCGGGGTTCCTTCEEECCSC
T ss_pred CEEEECCccc------ccc---------CHHHHHHHhhccCCCHHHHhhcCCCCEEECCCC
Confidence 9998877732 331 111111112357899999998888899999864
No 38
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=88.75 E-value=0.75 Score=41.47 Aligned_cols=70 Identities=9% Similarity=0.180 Sum_probs=43.6
Q ss_pred CCCCceEEEEEECCc-h-h-HHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHH
Q 024060 43 IDPKYKVAVLASKQE-H-C-LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLEL 119 (273)
Q Consensus 43 ~~~~~kiav~~Sg~g-~-~-l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~ 119 (273)
...|+||||+|.|.- . . +.++.. .+ ++++++|.... .....++|+++|+|-.+ .+ +.++
T Consensus 20 ~~~mirigiIG~G~ig~~~~~~~~~~---~~--~~~lvav~d~~----~~~a~~~a~~~g~~~~y-~d--------~~el 81 (350)
T 4had_A 20 FQSMLRFGIISTAKIGRDNVVPAIQD---AE--NCVVTAIASRD----LTRAREMADRFSVPHAF-GS--------YEEM 81 (350)
T ss_dssp --CCEEEEEESCCHHHHHTHHHHHHH---CS--SEEEEEEECSS----HHHHHHHHHHHTCSEEE-SS--------HHHH
T ss_pred ccCccEEEEEcChHHHHHHHHHHHHh---CC--CeEEEEEECCC----HHHHHHHHHHcCCCeee-CC--------HHHH
Confidence 456799999999863 2 2 233322 12 47888877543 23467889999999543 21 2334
Q ss_pred hc--CCCEEEEEe
Q 024060 120 VQ--NTDFLVLAR 130 (273)
Q Consensus 120 l~--~~Dlvv~ag 130 (273)
|+ ++|.|+++.
T Consensus 82 l~~~~iDaV~I~t 94 (350)
T 4had_A 82 LASDVIDAVYIPL 94 (350)
T ss_dssp HHCSSCSEEEECS
T ss_pred hcCCCCCEEEEeC
Confidence 44 689998876
No 39
>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}
Probab=88.61 E-value=0.9 Score=42.65 Aligned_cols=116 Identities=13% Similarity=0.184 Sum_probs=61.2
Q ss_pred CceEEEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHH----HHHHHcCCCEEEEcCCCCchHHHHHHHhc
Q 024060 46 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVI----RFLERHGIPYHYLCAKENEREEELLELVQ 121 (273)
Q Consensus 46 ~~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~----~~a~~~gIp~~~~~~~~~~~~~~~~~~l~ 121 (273)
..||+++|-+.......++.++.. ++.++. +++.+.-.+...+. +.|++.|..+.... ++.+.++
T Consensus 176 gl~va~vGD~~~rva~Sl~~~~~~--lG~~v~-~~~P~~l~p~~~~~~~~~~~a~~~G~~v~~~~--------d~~eav~ 244 (359)
T 2w37_A 176 GLTLTFMGDGRNNVANSLLVTGAI--LGVNIH-IVAPKALFPTEETQNIAKGFAEKSGAKLVITD--------DLDEGLK 244 (359)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHHH--HTCEEE-EECCGGGSCCHHHHHHHHHHHHHHTCCEEEES--------CHHHHHT
T ss_pred CeEEEEECCCccchHHHHHHHHHH--cCCEEE-EECCccccCCHHHHHHHHHHHHHcCCeEEEEe--------CHHHHhc
Confidence 367777776522223334433221 234543 23322111122233 34447776665543 1335567
Q ss_pred CCCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcC---CCeeEeecCCCCCC
Q 024060 122 NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYG---KDVINIHHGLLPSF 188 (273)
Q Consensus 122 ~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~---~~~iNiHpslLP~y 188 (273)
++|+|..-.|.++ +.+ ++..+....-.|-+..+.++..+ ..++-+||. |++
T Consensus 245 ~aDvvytd~w~sm---g~e-----------e~~er~~~~~~y~v~~ell~~ak~~~~dai~MHcL--P~~ 298 (359)
T 2w37_A 245 GSNVVYTDVWVSM---GES-----------NWEERVKELTPYQVNMEAMKKTGTPDDQLIFMHCL--PAF 298 (359)
T ss_dssp TCSEEEECCSCCT---TCT-----------THHHHHHHHGGGCBCHHHHHTTCCCGGGCEEEECS--CCC
T ss_pred CCCEEEEcccccc---ccc-----------chHHHHHHhhccccCHHHHHhhCCCCCCEEEECCC--CCC
Confidence 8999988788431 000 01111112224789999999887 789999994 887
No 40
>1zq6_A Otcase, ornithine carbamoyltransferase; alpha/beta two-domain; HET: AOR; 1.80A {Xanthomonas campestris} PDB: 1yh0_A* 1zq2_A 1yh1_A* 1zq8_A* 3kzc_A* 3kzk_A* 3kzm_A* 3kzn_A* 3kzo_A* 3m4j_A* 3m5d_A* 3m5c_A* 2g6a_A* 3l05_A* 2g65_A* 3l02_A* 3m4n_A* 2g6c_A* 3l06_A* 2g68_A* ...
Probab=88.52 E-value=3.3 Score=38.75 Aligned_cols=77 Identities=12% Similarity=0.113 Sum_probs=47.4
Q ss_pred HHHHHcCCCEEEEcCCCCchHHHHHHHhcCCCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhh
Q 024060 93 RFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRS 172 (273)
Q Consensus 93 ~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~ 172 (273)
+.|++.|..+....+ +.+.++++|+|..-.|.. |++.+-+ -+.......+-.|.+..+.++.
T Consensus 244 ~~a~~~g~~v~~~~d--------~~eav~~aDvVyt~~w~s------e~~mg~~----~~~~~~~~~~~~y~vt~e~l~~ 305 (359)
T 1zq6_A 244 QNVAESGGSLQVSHD--------IDSAYAGADVVYAKSWGA------LPFFGNW----EPEKPIRDQYQHFIVDERKMAL 305 (359)
T ss_dssp HHHHHHSCEEEEECC--------HHHHHTTCSEEEEECCCC------GGGTTCC----TTHHHHHGGGGGGSBCHHHHHT
T ss_pred HHHHHcCCeEEEECC--------HHHHhcCCCEEEECCccc------cccCCcc----hhhHHHHHHhcCCCCCHHHHHh
Confidence 344477776654331 345667899999888754 1111100 0001112233448999999999
Q ss_pred cCCCeeEeecCCCCCCCC
Q 024060 173 YGKDVINIHHGLLPSFKG 190 (273)
Q Consensus 173 ~~~~~iNiHpslLP~yRG 190 (273)
.+ .++-+|| ||.+||
T Consensus 306 a~-~ai~MHc--LP~~Rg 320 (359)
T 1zq6_A 306 TN-NGVFSHC--LPLRRN 320 (359)
T ss_dssp SS-SCEEECC--SCCCBT
T ss_pred CC-CCEEECC--CCCCCC
Confidence 88 9999999 488887
No 41
>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1
Probab=87.74 E-value=2.8 Score=38.41 Aligned_cols=113 Identities=14% Similarity=0.141 Sum_probs=68.0
Q ss_pred CceEEEEEECC-chhHHHHHHhhhcCCCCceEEEEeeCCCCC-CCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCC
Q 024060 46 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRG-PNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 123 (273)
Q Consensus 46 ~~kiav~~Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~-~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~ 123 (273)
..||+++|-+. +.....++.++. .++.++. ++.++.- ++..+.+.|++.|..+....+ +.+.++++
T Consensus 155 gl~va~vGD~~~~rva~Sl~~~~~--~~G~~v~--~~~P~~~~~~~~~~~~~~~~g~~~~~~~d--------~~eav~~a 222 (308)
T 1ml4_A 155 GLKIGLLGDLKYGRTVHSLAEALT--FYDVELY--LISPELLRMPRHIVEELREKGMKVVETTT--------LEDVIGKL 222 (308)
T ss_dssp SEEEEEESCTTTCHHHHHHHHHGG--GSCEEEE--EECCGGGCCCHHHHHHHHHTTCCEEEESC--------THHHHTTC
T ss_pred CeEEEEeCCCCcCchHHHHHHHHH--HCCCEEE--EECCccccCCHHHHHHHHHcCCeEEEEcC--------HHHHhcCC
Confidence 47888888764 334555666543 2345553 3333221 234577888889988765432 23456789
Q ss_pred CEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCC
Q 024060 124 DFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGL 184 (273)
Q Consensus 124 Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpsl 184 (273)
|+|..-.|.. |+|-+. +.+ ......|-+..+.++..+..++-+||.+
T Consensus 223 Dvvyt~~~q~------er~~~~---~~~-----~~~~~~y~v~~~ll~~a~~~ai~mH~lP 269 (308)
T 1ml4_A 223 DVLYVTRIQK------ERFPDE---QEY-----LKVKGSYQVNLKVLEKAKDELRIMHPLP 269 (308)
T ss_dssp SEEEECCCCG------GGSSSH---HHH-----HTTTTCCCBCTTGGGGSCTTCEEECCSC
T ss_pred CEEEECCccc------cccCCH---HHH-----HHHhcCcccCHHHHhhcCCCCEEECCCC
Confidence 9998877743 332100 000 0111347899999998888899999864
No 42
>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=87.64 E-value=1.7 Score=39.73 Aligned_cols=59 Identities=15% Similarity=0.241 Sum_probs=37.2
Q ss_pred HHhcCCCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCCCCCCCCC
Q 024060 118 ELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG 191 (273)
Q Consensus 118 ~~l~~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~ 191 (273)
+.++++|+|..-.|.+. ....++.......-.|-+..+.++..+..++-+|| ||.+||.
T Consensus 209 eav~~aDvvy~~~~~sm-------------g~~~~~~~~~~~~~~y~v~~e~l~~a~~~ai~mHp--lP~~Rg~ 267 (301)
T 2ef0_A 209 EAALGAHALYTDVWTSM-------------GQEAEREKRLRDFQGFQVNGELLKLLRPEGVFLHC--LPAHYGE 267 (301)
T ss_dssp HHHTTCSEEEECCCC---------------------CHHHHHTTTCCBCHHHHTTSCTTCEEEEC--SCCCBTT
T ss_pred HHhcCCCEEEecCcccC-------------CcccchhHHHHHhhccccCHHHHHhcCCCcEEECC--CCCCCCC
Confidence 44558999988777441 00111111112223488999999988888999998 5999983
No 43
>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}
Probab=87.33 E-value=1.4 Score=40.94 Aligned_cols=119 Identities=12% Similarity=0.125 Sum_probs=64.0
Q ss_pred CceEEEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHH----HHHHcCCCEEEEcCCCCchHHHHHHHhc
Q 024060 46 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIR----FLERHGIPYHYLCAKENEREEELLELVQ 121 (273)
Q Consensus 46 ~~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~----~a~~~gIp~~~~~~~~~~~~~~~~~~l~ 121 (273)
..||+++|-+ +.....++.++.. ++.++. +++.+.-.++..+.+ .|++.|..+....+ +. .++
T Consensus 175 glkva~vGD~-~rva~Sl~~~~~~--~G~~v~-~~~P~~~~~~~~~~~~~~~~a~~~g~~v~~~~d--------~~-av~ 241 (339)
T 4a8t_A 175 DCKVVFVGDA-TQVCFSLGLITTK--MGMNFV-HFGPEGFQLNEEHQAKLAKNCEVSGGSFLVTDD--------AS-SVE 241 (339)
T ss_dssp GCEEEEESSC-CHHHHHHHHHHHH--TTCEEE-EECCTTSSCCHHHHHHHHHHHHHHCCEEEEECC--------GG-GGT
T ss_pred CCEEEEECCC-chhHHHHHHHHHH--cCCEEE-EECCcccCCCHHHHHHHHHHHHHcCCEEEEECC--------hh-HHc
Confidence 4688887755 3223444444322 235543 333322112333433 34566766654331 22 466
Q ss_pred CCCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccc-cccCChhHHhhcCCCeeEeecCCCCCCCCC
Q 024060 122 NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYF-NMILSGKFLRSYGKDVINIHHGLLPSFKGG 191 (273)
Q Consensus 122 ~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~-~~il~~~~l~~~~~~~iNiHpslLP~yRG~ 191 (273)
++|+|..-.|..+- |++.+ +..+...|. +|.+..+.++..+..++-+||. |.+||.
T Consensus 242 ~aDvvytd~w~smg--~~~~~----------~~er~~~~~~~y~vt~ell~~ak~dai~mHcL--Pa~Rg~ 298 (339)
T 4a8t_A 242 GADFLYTDVWYGLY--EAELS----------EEERMKVFYPKYQVNQEMMDRAGANCKFMHCL--PATRGE 298 (339)
T ss_dssp TCSEEEECCSSCCT--TSCCC----------HHHHHHHHTTTTCBCHHHHHHHCTTCEEEECS--CCCBTT
T ss_pred CCCEEEecCcccCC--chhhh----------hHHHHHHhccccccCHHHHHhcCCCcEEECCC--CCCCCC
Confidence 89999864553310 00100 011222234 3899999999888899999995 888863
No 44
>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=87.20 E-value=0.74 Score=42.31 Aligned_cols=60 Identities=10% Similarity=0.193 Sum_probs=38.1
Q ss_pred HHHHhcCCCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCCCCCCCC
Q 024060 116 LLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKG 190 (273)
Q Consensus 116 ~~~~l~~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG 190 (273)
+.+.++++|+|..-.|..+ + ...+...+...+..|.+..+.++..+..++-+||. |.+||
T Consensus 210 ~~eav~~aDvvyt~~w~sm---g----------~e~~~~~r~~~~~~y~v~~~~l~~a~~~ai~mH~l--P~~Rg 269 (309)
T 4f2g_A 210 PNEACKGADLVTTDVWTSM---G----------FEAENEARKRAFADWCVDEEMMSHANSDALFMHCL--PAHRG 269 (309)
T ss_dssp HHHHTTTCSEEEECCC-------------------------CCSGGGGCBCHHHHTTSCTTCEEEECS--SCCBT
T ss_pred HHHHhcCCCEEEecccccC---c----------chhhHHHHHHHhcCceeCHHHHHhcCCCeEEECCC--CCCCC
Confidence 4456678999987665321 0 01112233444456899999999888889999995 88887
No 45
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}
Probab=85.99 E-value=1.3 Score=39.87 Aligned_cols=71 Identities=4% Similarity=0.014 Sum_probs=42.3
Q ss_pred CceEEEEEECCch--hHHHH---HHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHh
Q 024060 46 KYKVAVLASKQEH--CLVDF---LYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELV 120 (273)
Q Consensus 46 ~~kiav~~Sg~g~--~l~~l---l~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l 120 (273)
|.||||+|.|.-. .+.++ ...+. ....+++++|+.... ....++|+++|+|-.+ .+ +.++|
T Consensus 25 kirvgiIG~G~ig~~H~~a~~~~~~~~~-~~~~~~lvav~d~~~----~~a~~~a~~~g~~~~y-~d--------~~ell 90 (393)
T 4fb5_A 25 PLGIGLIGTGYMGKCHALAWNAVKTVFG-DVERPRLVHLAEANA----GLAEARAGEFGFEKAT-AD--------WRALI 90 (393)
T ss_dssp CCEEEEECCSHHHHHHHHHHTTHHHHHC-SSCCCEEEEEECC------TTHHHHHHHHTCSEEE-SC--------HHHHH
T ss_pred CccEEEEcCCHHHHHHHHHHHhhhhhhc-cCCCcEEEEEECCCH----HHHHHHHHHhCCCeec-CC--------HHHHh
Confidence 4799999988632 22222 11111 112478998876442 2367899999998554 21 23344
Q ss_pred c--CCCEEEEEe
Q 024060 121 Q--NTDFLVLAR 130 (273)
Q Consensus 121 ~--~~Dlvv~ag 130 (273)
+ ++|.|+++.
T Consensus 91 ~~~~iDaV~Iat 102 (393)
T 4fb5_A 91 ADPEVDVVSVTT 102 (393)
T ss_dssp HCTTCCEEEECS
T ss_pred cCCCCcEEEECC
Confidence 4 689998876
No 46
>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}
Probab=85.97 E-value=1.6 Score=39.38 Aligned_cols=74 Identities=20% Similarity=0.175 Sum_probs=42.9
Q ss_pred CceEEEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCCCE
Q 024060 46 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDF 125 (273)
Q Consensus 46 ~~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~Dl 125 (273)
++||+|+|.|.-.. ..+.++ . ..+++++|+............+.++++|++...+.+ -+++++. .++|.
T Consensus 2 ~~rvgiiG~G~~~~--~~~~~l-~--~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ll~~-~~vD~ 70 (337)
T 3ip3_A 2 SLKICVIGSSGHFR--YALEGL-D--EECSITGIAPGVPEEDLSKLEKAISEMNIKPKKYNN-----WWEMLEK-EKPDI 70 (337)
T ss_dssp CEEEEEECSSSCHH--HHHTTC-C--TTEEEEEEECSSTTCCCHHHHHHHHTTTCCCEECSS-----HHHHHHH-HCCSE
T ss_pred ceEEEEEccchhHH--HHHHhc-C--CCcEEEEEecCCchhhHHHHHHHHHHcCCCCcccCC-----HHHHhcC-CCCCE
Confidence 58999999865322 344444 2 258999888654312233456677778985433321 1233321 17898
Q ss_pred EEEEe
Q 024060 126 LVLAR 130 (273)
Q Consensus 126 vv~ag 130 (273)
|+++.
T Consensus 71 V~I~t 75 (337)
T 3ip3_A 71 LVINT 75 (337)
T ss_dssp EEECS
T ss_pred EEEeC
Confidence 88775
No 47
>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A
Probab=84.95 E-value=1.8 Score=40.46 Aligned_cols=119 Identities=12% Similarity=0.128 Sum_probs=64.0
Q ss_pred CceEEEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHH----HHHHcCCCEEEEcCCCCchHHHHHHHhc
Q 024060 46 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIR----FLERHGIPYHYLCAKENEREEELLELVQ 121 (273)
Q Consensus 46 ~~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~----~a~~~gIp~~~~~~~~~~~~~~~~~~l~ 121 (273)
..||+++|-+ +.....++.++.. ++.++. +++.+.-.++..+.+ .|++.|..+....+ +. .++
T Consensus 153 glkva~vGD~-~rva~Sl~~~~~~--~G~~v~-~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d--------~~-av~ 219 (355)
T 4a8p_A 153 DCKVVFVGDA-TQVCFSLGLITTK--MGMNFV-HFGPEGFQLNEEHQAKLAKNCEVSGGSFLVTDD--------AS-SVE 219 (355)
T ss_dssp GCEEEEESCC-CHHHHHHHHHHHH--TTCEEE-EECCTTSSCCHHHHHHHHHHHHHHSCEEEEECC--------GG-GGT
T ss_pred CCEEEEECCC-chhHHHHHHHHHH--cCCEEE-EECCCccCCCHHHHHHHHHHHHHcCCeEEEECC--------HH-HHc
Confidence 4788888765 3223444444322 235543 333322112333433 34566776654331 22 466
Q ss_pred CCCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccc-cccCChhHHhhcCCCeeEeecCCCCCCCCC
Q 024060 122 NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYF-NMILSGKFLRSYGKDVINIHHGLLPSFKGG 191 (273)
Q Consensus 122 ~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~-~~il~~~~l~~~~~~~iNiHpslLP~yRG~ 191 (273)
++|+|..-.|..+ -|++.+ +..+...|. +|.+..+.++..+..++-+||. |.+||.
T Consensus 220 ~aDVVytd~w~sm--gq~~~~----------~~er~~~~~~~y~vt~ell~~ak~dai~MHcL--Pa~Rg~ 276 (355)
T 4a8p_A 220 GADFLYTDVWYGL--YEAELS----------EEERMKVFYPKYQVNQEMMDRAGANCKFMHCL--PATRGE 276 (355)
T ss_dssp TCSEEEECCSSEE--TTEECC----------HHHHHHHHTTTTCBCHHHHHHHCTTCEEEECS--CCCBTT
T ss_pred CCCEEEecccccC--cchhhh----------hHHHHHHhccccccCHHHHHhcCCCcEEECCC--CCCCCC
Confidence 8999986444321 000000 011122233 3899999999888899999995 888873
No 48
>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A
Probab=84.61 E-value=2 Score=39.38 Aligned_cols=113 Identities=17% Similarity=0.191 Sum_probs=64.4
Q ss_pred CCceEEEEEECC-chhHHHHHHhhhcCCC-CceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcC
Q 024060 45 PKYKVAVLASKQ-EHCLVDFLYGWQEGKL-PVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQN 122 (273)
Q Consensus 45 ~~~kiav~~Sg~-g~~l~~ll~~~~~~~l-~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~ 122 (273)
...||+++|-+. +.....++.++. .+ +.++. +++.+.-..+..+.+.|++.|..+....+ +.+.+++
T Consensus 150 ~glkva~vGD~~~~rva~Sl~~~~~--~~~G~~v~-~~~P~~~~~~~~~~~~~~~~g~~~~~~~d--------~~eav~~ 218 (306)
T 4ekn_B 150 DGIKIAFVGDLKYGRTVHSLVYALS--LFENVEMY-FVSPKELRLPKDIIEDLKAKNIKFYEKES--------LDDLDDD 218 (306)
T ss_dssp TTCEEEEESCTTTCHHHHHHHHHHH--TSSSCEEE-EECCGGGCCCHHHHHHHHHTTCCEEEESC--------GGGCCTT
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHH--hcCCCEEE-EECCcccccCHHHHHHHHHcCCEEEEEcC--------HHHHhcC
Confidence 347899988654 333455555543 23 45643 33332211345677788888888765432 1234568
Q ss_pred CCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCC
Q 024060 123 TDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGL 184 (273)
Q Consensus 123 ~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpsl 184 (273)
+|+|..-.|. +|+|-+.. ......-.|-+..+.++. ..++-+||.+
T Consensus 219 aDvvy~~~~q------~er~~~~~--------e~~~~~~~y~v~~~~l~~--~~ai~mH~lP 264 (306)
T 4ekn_B 219 IDVLYVTRIQ------KERFPDPN--------EYEKVKGSYKIKREYVEG--KKFIIMHPLP 264 (306)
T ss_dssp CSEEEECCCC------GGGCCSHH--------HHHHHHHHHCBCHHHHTT--CCCEEECCSC
T ss_pred CCEEEeCCcc------cccCCCHH--------HHHHhccCcEECHHHHcC--CCCEEECCCC
Confidence 9999876653 23331110 000111237899999987 5689999974
No 49
>3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis}
Probab=83.31 E-value=6.3 Score=36.75 Aligned_cols=118 Identities=13% Similarity=0.196 Sum_probs=67.1
Q ss_pred CCceEEEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHc------CCCEEEEcCCCCchHHHHHH
Q 024060 45 PKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERH------GIPYHYLCAKENEREEELLE 118 (273)
Q Consensus 45 ~~~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~------gIp~~~~~~~~~~~~~~~~~ 118 (273)
...||+++|-++ .....++.++.. +++++. +++.+.-..+..+.+.|++. |..+.... ++.+
T Consensus 187 ~glkva~vGD~~-nva~Sl~~~l~~--lG~~v~-~~~P~~~~~~~~i~~~~~~~a~~~~~g~~~~~~~--------d~~e 254 (353)
T 3sds_A 187 EGLKIAWVGDAN-NVLFDLAIAATK--MGVNVA-VATPRGYEIPSHIVELIQKAREGVQSPGNLTQTT--------VPEV 254 (353)
T ss_dssp TTCEEEEESCCC-HHHHHHHHHHHH--TTCEEE-EECCTTCCCCHHHHHHHHHHHTTCSSCCCEEEES--------CHHH
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHH--cCCEEE-EECCcccCCCHHHHHHHHHhhhhccCCCeEEEEC--------CHHH
Confidence 458999988664 234445554432 346653 34433211345566666643 55665543 1345
Q ss_pred HhcCCCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhh--cCCCeeEeecCCCCCCC
Q 024060 119 LVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRS--YGKDVINIHHGLLPSFK 189 (273)
Q Consensus 119 ~l~~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~--~~~~~iNiHpslLP~yR 189 (273)
.++++|+|..-.|.. .|.|+. ...++..|..|.+..+.++. .+..++-+||. |++|
T Consensus 255 av~~aDVvytd~w~s---mg~E~~----------~~~r~~~~~~y~vt~ell~~~~ak~~ai~MHcL--P~~~ 312 (353)
T 3sds_A 255 AVKDADVIVTDTWIS---MGQETE----------KIKRLEAFKDFKVTSELAKRGGAKENWKFMHCL--PRHP 312 (353)
T ss_dssp HTTTCSEEEECCC---------------------CHHHHHHTTTCCBCHHHHHHHTCCTTCEEEECS--CCCT
T ss_pred HhcCCCEEEeCCccC---CchhhH----------HHHHHHHhhCceecHHHHhhcccCCCcEEECCC--CCCC
Confidence 677999998755532 221210 11123334568999999998 77889999996 7764
No 50
>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A
Probab=82.55 E-value=6.6 Score=36.10 Aligned_cols=116 Identities=13% Similarity=0.204 Sum_probs=64.8
Q ss_pred CceEEEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHH----HHHHcCCCEEEEcCCCCchHHHHHHHhc
Q 024060 46 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIR----FLERHGIPYHYLCAKENEREEELLELVQ 121 (273)
Q Consensus 46 ~~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~----~a~~~gIp~~~~~~~~~~~~~~~~~~l~ 121 (273)
..||+++|-++ .....++.++. .+++++. +++.+.-..+..+.+ .|++.|..+....+ +.+.++
T Consensus 155 gl~va~vGD~~-~va~Sl~~~~~--~~G~~v~-~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~~~d--------~~eav~ 222 (321)
T 1oth_A 155 GLTLSWIGDGN-NILHSIMMSAA--KFGMHLQ-AATPKGYEPDASVTKLAEQYAKENGTKLLLTND--------PLEAAH 222 (321)
T ss_dssp TCEEEEESCSS-HHHHHHHTTTG--GGTCEEE-EECCTTCCCCHHHHHHHHHHHHHHTCCEEEESC--------HHHHHT
T ss_pred CcEEEEECCch-hhHHHHHHHHH--HcCCeEE-EECCccccCCHHHHHHHHHHHHHcCCeEEEEEC--------HHHHhc
Confidence 47888887654 23445555432 2346653 333332112333433 44567877765431 345667
Q ss_pred CCCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCCCCCC
Q 024060 122 NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSF 188 (273)
Q Consensus 122 ~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~y 188 (273)
++|+|..-.|.++ +.+. +...+....-.|-+..+.++..+..++-+||. |++
T Consensus 223 ~aDvvy~d~w~s~---g~e~----------~~~~~~~~~~~y~v~~~~l~~a~~dai~mH~l--P~~ 274 (321)
T 1oth_A 223 GGNVLITDTWISM---GREE----------EKKKRLQAFQGYQVTMKTAKVAASDWTFLHCL--PRK 274 (321)
T ss_dssp TCSEEEECCSSCT---TCGG----------GHHHHHHHTTTCCBCHHHHHTSCTTCEEEECS--CCC
T ss_pred cCCEEEEeccccc---cchh----------hhHHHHHhccCceECHHHHhhcCCCCEEECCC--CCC
Confidence 9999987566542 1000 00011111233789999999888889999996 665
No 51
>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}
Probab=80.86 E-value=2.1 Score=39.54 Aligned_cols=75 Identities=12% Similarity=0.148 Sum_probs=44.0
Q ss_pred CCCCceEEEEEECCc-h-hHHHHHHhhh-cCCC--CceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHH
Q 024060 43 IDPKYKVAVLASKQE-H-CLVDFLYGWQ-EGKL--PVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELL 117 (273)
Q Consensus 43 ~~~~~kiav~~Sg~g-~-~l~~ll~~~~-~~~l--~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~ 117 (273)
++.|+||||+|.|.- . .+.++.+.-. ...+ +++|++|.... .....++|+++|+|-.+ .+ +.
T Consensus 23 Ms~klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~----~~~a~~~a~~~~~~~~y-~d--------~~ 89 (412)
T 4gqa_A 23 MSARLNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQD----QAMAERHAAKLGAEKAY-GD--------WR 89 (412)
T ss_dssp --CEEEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSS----HHHHHHHHHHHTCSEEE-SS--------HH
T ss_pred ccccceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCC----HHHHHHHHHHcCCCeEE-CC--------HH
Confidence 456789999999863 2 3444433210 0111 36888776543 24467889999998543 21 23
Q ss_pred HHhc--CCCEEEEEe
Q 024060 118 ELVQ--NTDFLVLAR 130 (273)
Q Consensus 118 ~~l~--~~Dlvv~ag 130 (273)
++|+ ++|+|+++.
T Consensus 90 ~ll~~~~vD~V~I~t 104 (412)
T 4gqa_A 90 ELVNDPQVDVVDITS 104 (412)
T ss_dssp HHHHCTTCCEEEECS
T ss_pred HHhcCCCCCEEEECC
Confidence 3444 689998875
No 52
>3kzn_A Aotcase, N-acetylornithine carbamoyltransferase; transcarbamylase, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: KCX AOR; 1.80A {Xanthomonas campestris PV} PDB: 3kzc_A* 3kzm_A* 3kzk_A* 3kzo_A* 3m4j_A* 3m5d_A* 3m5c_A* 3l05_A* 3l02_A* 3m4n_A* 3l06_A* 3l04_A*
Probab=80.77 E-value=7.8 Score=36.00 Aligned_cols=61 Identities=10% Similarity=0.101 Sum_probs=37.3
Q ss_pred HHHhcCCCEEEEEeecCCcchhhHhhhhhhhhhhhcccC-cccccccccCChhHHhhcCCCeeEeecCCCCCCCCC
Q 024060 117 LELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKG-SLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG 191 (273)
Q Consensus 117 ~~~l~~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~ 191 (273)
.+.++++|+|..-.|.. +++-+ ..++.. ....|-.|.+..++++..+ .++-+||. |.+||.
T Consensus 260 ~eav~~aDvvyt~r~q~------~r~~~-----~~~~~~~~~~~~~~y~v~~~l~~~~~-~ai~MHpl--P~~Rg~ 321 (359)
T 3kzn_A 260 DSAYAGADVVYAKSWGA------LPFFG-----NWEPEKPIRDQYQHFIVDERKMALTN-NGVFSHCL--PLRRNV 321 (359)
T ss_dssp HHHHTTCSEEEEECCCC------GGGTT-----CCTTHHHHHGGGGGGSBCHHHHHTSS-SCEEECCS--CCCBTT
T ss_pred HHHhcCCeEEEEEEEEE------eeccc-----chhhhHHHHHHHhccChHHHHhcCCC-CCEEECCC--CCCCCC
Confidence 34566899999888865 21111 111111 1223344788888887654 57789985 999983
No 53
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=80.73 E-value=1.9 Score=39.23 Aligned_cols=67 Identities=19% Similarity=0.173 Sum_probs=41.7
Q ss_pred CCceEEEEEECCc-h--hHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhc
Q 024060 45 PKYKVAVLASKQE-H--CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ 121 (273)
Q Consensus 45 ~~~kiav~~Sg~g-~--~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~ 121 (273)
+++||+|+|.|.- . .+.++.+. + .+++++|+... .....++|+++|+|.+. + +.+++.
T Consensus 26 ~~~rigiIG~G~~g~~~~~~~l~~~---~--~~~l~av~d~~----~~~~~~~a~~~g~~~~~-~---------~~~ll~ 86 (350)
T 3rc1_A 26 NPIRVGVIGCADIAWRRALPALEAE---P--LTEVTAIASRR----WDRAKRFTERFGGEPVE-G---------YPALLE 86 (350)
T ss_dssp CCEEEEEESCCHHHHHTHHHHHHHC---T--TEEEEEEEESS----HHHHHHHHHHHCSEEEE-S---------HHHHHT
T ss_pred CceEEEEEcCcHHHHHHHHHHHHhC---C--CeEEEEEEcCC----HHHHHHHHHHcCCCCcC-C---------HHHHhc
Confidence 4589999998753 2 23333321 2 47888887643 23467788899998762 1 223443
Q ss_pred --CCCEEEEEe
Q 024060 122 --NTDFLVLAR 130 (273)
Q Consensus 122 --~~Dlvv~ag 130 (273)
++|+|+++.
T Consensus 87 ~~~~D~V~i~t 97 (350)
T 3rc1_A 87 RDDVDAVYVPL 97 (350)
T ss_dssp CTTCSEEEECC
T ss_pred CCCCCEEEECC
Confidence 578888765
No 54
>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X
Probab=80.13 E-value=2.5 Score=37.90 Aligned_cols=70 Identities=19% Similarity=0.257 Sum_probs=41.6
Q ss_pred CceEEEEEECCchhHHHHHHhhhc-CCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhc--C
Q 024060 46 KYKVAVLASKQEHCLVDFLYGWQE-GKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ--N 122 (273)
Q Consensus 46 ~~kiav~~Sg~g~~l~~ll~~~~~-~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~--~ 122 (273)
++||+|+|.|.-. ...+.++.. +...+++++|.+.. .....++|+++|+|..+ . .+.+++. +
T Consensus 2 ~~rigiiG~G~ig--~~~~~~l~~~~~~~~~l~av~d~~----~~~a~~~a~~~~~~~~~-~--------~~~~ll~~~~ 66 (334)
T 3ohs_X 2 ALRWGIVSVGLIS--SDFTAVLQTLPRSEHQVVAVAARD----LSRAKEFAQKHDIPKAY-G--------SYEELAKDPN 66 (334)
T ss_dssp CEEEEEECCSHHH--HHHHHHHTTSCTTTEEEEEEECSS----HHHHHHHHHHHTCSCEE-S--------SHHHHHHCTT
T ss_pred ccEEEEECchHHH--HHHHHHHHhCCCCCeEEEEEEcCC----HHHHHHHHHHcCCCccc-C--------CHHHHhcCCC
Confidence 4799999987632 122333322 22236888876543 23467888999998443 2 1223443 6
Q ss_pred CCEEEEEe
Q 024060 123 TDFLVLAR 130 (273)
Q Consensus 123 ~Dlvv~ag 130 (273)
+|+|+++.
T Consensus 67 vD~V~i~t 74 (334)
T 3ohs_X 67 VEVAYVGT 74 (334)
T ss_dssp CCEEEECC
T ss_pred CCEEEECC
Confidence 88888875
No 55
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*
Probab=79.89 E-value=3 Score=37.66 Aligned_cols=69 Identities=17% Similarity=0.243 Sum_probs=41.7
Q ss_pred CCCceEEEEEECC-ch-hHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhc
Q 024060 44 DPKYKVAVLASKQ-EH-CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ 121 (273)
Q Consensus 44 ~~~~kiav~~Sg~-g~-~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~ 121 (273)
.+++||+|+|.|. |. .+.++.+. ...+++++|+... .....++++++|++++ .+ +.++++
T Consensus 11 ~~~~rvgiiG~G~~g~~~~~~l~~~----~~~~~lvav~d~~----~~~~~~~~~~~~~~~~--~~--------~~~ll~ 72 (354)
T 3q2i_A 11 DRKIRFALVGCGRIANNHFGALEKH----ADRAELIDVCDID----PAALKAAVERTGARGH--AS--------LTDMLA 72 (354)
T ss_dssp SSCEEEEEECCSTTHHHHHHHHHHT----TTTEEEEEEECSS----HHHHHHHHHHHCCEEE--SC--------HHHHHH
T ss_pred CCcceEEEEcCcHHHHHHHHHHHhC----CCCeEEEEEEcCC----HHHHHHHHHHcCCcee--CC--------HHHHhc
Confidence 4578999999986 33 23333331 1247888776543 2345677888898543 21 223333
Q ss_pred --CCCEEEEEe
Q 024060 122 --NTDFLVLAR 130 (273)
Q Consensus 122 --~~Dlvv~ag 130 (273)
++|+|+++.
T Consensus 73 ~~~~D~V~i~t 83 (354)
T 3q2i_A 73 QTDADIVILTT 83 (354)
T ss_dssp HCCCSEEEECS
T ss_pred CCCCCEEEECC
Confidence 788888765
No 56
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*
Probab=78.64 E-value=5.3 Score=35.85 Aligned_cols=70 Identities=11% Similarity=0.110 Sum_probs=40.9
Q ss_pred CceEEEEEECC-chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhc--C
Q 024060 46 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ--N 122 (273)
Q Consensus 46 ~~kiav~~Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~--~ 122 (273)
++||+|+|.|. |.. .+..+.+...++++++|+... .....++++++||+...+.+ +.++++ +
T Consensus 2 ~~rigiIG~G~~g~~---~~~~l~~~~~~~~l~av~d~~----~~~~~~~~~~~g~~~~~~~~--------~~~ll~~~~ 66 (344)
T 3mz0_A 2 SLRIGVIGTGAIGKE---HINRITNKLSGAEIVAVTDVN----QEAAQKVVEQYQLNATVYPN--------DDSLLADEN 66 (344)
T ss_dssp CEEEEEECCSHHHHH---HHHHHHHTCSSEEEEEEECSS----HHHHHHHHHHTTCCCEEESS--------HHHHHHCTT
T ss_pred eEEEEEECccHHHHH---HHHHHHhhCCCcEEEEEEcCC----HHHHHHHHHHhCCCCeeeCC--------HHHHhcCCC
Confidence 47999999875 322 223332111247888776543 23467788899975443331 223443 5
Q ss_pred CCEEEEEe
Q 024060 123 TDFLVLAR 130 (273)
Q Consensus 123 ~Dlvv~ag 130 (273)
+|+|+++.
T Consensus 67 ~D~V~i~t 74 (344)
T 3mz0_A 67 VDAVLVTS 74 (344)
T ss_dssp CCEEEECS
T ss_pred CCEEEECC
Confidence 88888876
No 57
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}
Probab=76.97 E-value=3.2 Score=37.22 Aligned_cols=68 Identities=15% Similarity=0.248 Sum_probs=40.9
Q ss_pred CCceEEEEEECCc-hh-HHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhc-
Q 024060 45 PKYKVAVLASKQE-HC-LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ- 121 (273)
Q Consensus 45 ~~~kiav~~Sg~g-~~-l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~- 121 (273)
+++||+|+|.|.- .. +.++.+. + .+++++|+... .....++++++|+|..+ . + +.+++.
T Consensus 4 ~~~~igiiG~G~~g~~~~~~l~~~---~--~~~l~av~d~~----~~~~~~~~~~~~~~~~~-~-----~---~~~ll~~ 65 (330)
T 3e9m_A 4 DKIRYGIMSTAQIVPRFVAGLRES---A--QAEVRGIASRR----LENAQKMAKELAIPVAY-G-----S---YEELCKD 65 (330)
T ss_dssp CCEEEEECSCCTTHHHHHHHHHHS---S--SEEEEEEBCSS----SHHHHHHHHHTTCCCCB-S-----S---HHHHHHC
T ss_pred CeEEEEEECchHHHHHHHHHHHhC---C--CcEEEEEEeCC----HHHHHHHHHHcCCCcee-C-----C---HHHHhcC
Confidence 4589999999863 32 3333221 2 47888776543 24567888999997332 1 1 223343
Q ss_pred -CCCEEEEEe
Q 024060 122 -NTDFLVLAR 130 (273)
Q Consensus 122 -~~Dlvv~ag 130 (273)
++|+|+++.
T Consensus 66 ~~~D~V~i~t 75 (330)
T 3e9m_A 66 ETIDIIYIPT 75 (330)
T ss_dssp TTCSEEEECC
T ss_pred CCCCEEEEcC
Confidence 678888765
No 58
>2w6k_A COBE; biosynthetic protein, cobalamin, complete proteome, vitamin B12; 1.70A {Pseudomonas aeruginosa} SCOP: c.151.1.1 PDB: 2bsn_A 2w6l_A
Probab=76.95 E-value=7.3 Score=31.67 Aligned_cols=66 Identities=15% Similarity=0.155 Sum_probs=41.2
Q ss_pred CCCCCCceEEEEEECCchhH---HHHH-HhhhcCCC-CceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEc
Q 024060 41 PDIDPKYKVAVLASKQEHCL---VDFL-YGWQEGKL-PVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 106 (273)
Q Consensus 41 ~~~~~~~kiav~~Sg~g~~l---~~ll-~~~~~~~l-~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~ 106 (273)
+...|++-++=+|...|+.. .+.+ +++.+..+ ...|.++.|-..+..+..++++|+++|+|+..++
T Consensus 5 ~~~~p~~lvvGIGcrrg~~~~~i~~ai~~aL~~~~l~~~~v~~latid~K~dE~gL~~~A~~lg~pl~~~~ 75 (145)
T 2w6k_A 5 PLPIPSLLIAGIGCRRGCSAEHLRALLERTLGEHGRSLAELDALASIDGKRDEPGLRQLATLLERPVHFLA 75 (145)
T ss_dssp CCCCCCCEEEEEEECTTCCHHHHHHHHHHHHHHTTCCGGGCCEEEEECSSSCCHHHHHHHHHHTSCEEEEC
T ss_pred ccccCCeEEEEEeeCCCCCHHHHHHHHHHHHHHcCCCHHHcceEechHHhCCCHHHHHHHHHhCCCcEEeC
Confidence 34556665555666666533 3322 33433333 3566677776555456779999999999999886
No 59
>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}
Probab=76.55 E-value=3 Score=37.33 Aligned_cols=68 Identities=18% Similarity=0.254 Sum_probs=36.9
Q ss_pred CCceEEEEEECCc-hh-HHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhc-
Q 024060 45 PKYKVAVLASKQE-HC-LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ- 121 (273)
Q Consensus 45 ~~~kiav~~Sg~g-~~-l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~- 121 (273)
+++||+|+|.|.- .. +.++... + .+++++|+..... ...++|+++|+|..+ .+ +.+++.
T Consensus 4 ~~~rigiiG~G~ig~~~~~~l~~~---~--~~~~~av~d~~~~----~~~~~a~~~~~~~~~-~~--------~~~ll~~ 65 (329)
T 3evn_A 4 SKVRYGVVSTAKVAPRFIEGVRLA---G--NGEVVAVSSRTLE----SAQAFANKYHLPKAY-DK--------LEDMLAD 65 (329)
T ss_dssp -CEEEEEEBCCTTHHHHHHHHHHH---C--SEEEEEEECSCSS----TTCC---CCCCSCEE-SC--------HHHHHTC
T ss_pred CceEEEEEechHHHHHHHHHHHhC---C--CcEEEEEEcCCHH----HHHHHHHHcCCCccc-CC--------HHHHhcC
Confidence 4589999999863 32 3333321 2 4788888754322 235677888887332 11 223444
Q ss_pred -CCCEEEEEe
Q 024060 122 -NTDFLVLAR 130 (273)
Q Consensus 122 -~~Dlvv~ag 130 (273)
++|+|+++.
T Consensus 66 ~~~D~V~i~t 75 (329)
T 3evn_A 66 ESIDVIYVAT 75 (329)
T ss_dssp TTCCEEEECS
T ss_pred CCCCEEEECC
Confidence 678777764
No 60
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=75.60 E-value=6.1 Score=30.69 Aligned_cols=72 Identities=15% Similarity=0.244 Sum_probs=41.4
Q ss_pred CCCCceEEEEEECC-chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHh-
Q 024060 43 IDPKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELV- 120 (273)
Q Consensus 43 ~~~~~kiav~~Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l- 120 (273)
.+.+.+|+|+|.|. |..+...|.. .| ++++++=.++ ...+.+++.|+++...+. .+++.++..
T Consensus 4 ~~~~~~viIiG~G~~G~~la~~L~~--~g---~~v~vid~~~------~~~~~~~~~g~~~i~gd~----~~~~~l~~a~ 68 (140)
T 3fwz_A 4 VDICNHALLVGYGRVGSLLGEKLLA--SD---IPLVVIETSR------TRVDELRERGVRAVLGNA----ANEEIMQLAH 68 (140)
T ss_dssp CCCCSCEEEECCSHHHHHHHHHHHH--TT---CCEEEEESCH------HHHHHHHHTTCEEEESCT----TSHHHHHHTT
T ss_pred ccCCCCEEEECcCHHHHHHHHHHHH--CC---CCEEEEECCH------HHHHHHHHcCCCEEECCC----CCHHHHHhcC
Confidence 34457899999876 5555444442 23 5665443332 234556678998875432 234444443
Q ss_pred -cCCCEEEEE
Q 024060 121 -QNTDFLVLA 129 (273)
Q Consensus 121 -~~~Dlvv~a 129 (273)
.++|+++++
T Consensus 69 i~~ad~vi~~ 78 (140)
T 3fwz_A 69 LECAKWLILT 78 (140)
T ss_dssp GGGCSEEEEC
T ss_pred cccCCEEEEE
Confidence 378988765
No 61
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}
Probab=75.52 E-value=2.5 Score=37.36 Aligned_cols=68 Identities=12% Similarity=0.081 Sum_probs=39.7
Q ss_pred CceEEEEEECC-chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCCC
Q 024060 46 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 124 (273)
Q Consensus 46 ~~kiav~~Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~D 124 (273)
++||+|+|.|. |.. .++..+... ..+++++|+... .....++++++|++.+ .+ -++++ .++|
T Consensus 6 ~~~igiIG~G~~g~~--~~~~~l~~~-~~~~l~av~d~~----~~~~~~~a~~~~~~~~--~~-----~~~ll---~~~D 68 (308)
T 3uuw_A 6 NIKMGMIGLGSIAQK--AYLPILTKS-ERFEFVGAFTPN----KVKREKICSDYRIMPF--DS-----IESLA---KKCD 68 (308)
T ss_dssp CCEEEEECCSHHHHH--HTHHHHTSC-SSSEEEEEECSC----HHHHHHHHHHHTCCBC--SC-----HHHHH---TTCS
T ss_pred cCcEEEEecCHHHHH--HHHHHHHhC-CCeEEEEEECCC----HHHHHHHHHHcCCCCc--CC-----HHHHH---hcCC
Confidence 48999999885 322 122222221 147888777543 2346778888999862 21 12333 3778
Q ss_pred EEEEEe
Q 024060 125 FLVLAR 130 (273)
Q Consensus 125 lvv~ag 130 (273)
+|+++.
T Consensus 69 ~V~i~t 74 (308)
T 3uuw_A 69 CIFLHS 74 (308)
T ss_dssp EEEECC
T ss_pred EEEEeC
Confidence 887765
No 62
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=75.17 E-value=7.8 Score=35.27 Aligned_cols=69 Identities=10% Similarity=0.108 Sum_probs=41.4
Q ss_pred CceEEEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhc--CC
Q 024060 46 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ--NT 123 (273)
Q Consensus 46 ~~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~--~~ 123 (273)
++||+|+|.|.... ..++..+..+ .+++++|+... .....++|+++|++..+ . .+.+++. ++
T Consensus 26 ~irvgiiG~G~~~~-~~~~~~~~~~--~~~lvav~d~~----~~~a~~~a~~~~~~~~~-~--------~~~~ll~~~~v 89 (361)
T 3u3x_A 26 ELRFAAVGLNHNHI-YGQVNCLLRA--GARLAGFHEKD----DALAAEFSAVYADARRI-A--------TAEEILEDENI 89 (361)
T ss_dssp CCEEEEECCCSTTH-HHHHHHHHHT--TCEEEEEECSC----HHHHHHHHHHSSSCCEE-S--------CHHHHHTCTTC
T ss_pred CcEEEEECcCHHHH-HHHHHHhhcC--CcEEEEEEcCC----HHHHHHHHHHcCCCccc-C--------CHHHHhcCCCC
Confidence 47999999987542 1122222222 48898887643 23467788999865433 2 1233444 57
Q ss_pred CEEEEEe
Q 024060 124 DFLVLAR 130 (273)
Q Consensus 124 Dlvv~ag 130 (273)
|+|+++.
T Consensus 90 D~V~I~t 96 (361)
T 3u3x_A 90 GLIVSAA 96 (361)
T ss_dssp CEEEECC
T ss_pred CEEEEeC
Confidence 8888765
No 63
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}
Probab=74.90 E-value=3.2 Score=38.17 Aligned_cols=68 Identities=15% Similarity=0.147 Sum_probs=41.0
Q ss_pred CceEEEEEEC-Cc-h-hHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcC
Q 024060 46 KYKVAVLASK-QE-H-CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQN 122 (273)
Q Consensus 46 ~~kiav~~Sg-~g-~-~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~ 122 (273)
++||+|+|.| .. . .+..+... + ..++++|+... .....++|+++|++++ .+ -+++++. .+
T Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~---~--~~~l~av~d~~----~~~~~~~a~~~g~~~~--~~-----~~ell~~-~~ 64 (387)
T 3moi_A 2 KIRFGICGLGFAGSVLMAPAMRHH---P--DAQIVAACDPN----EDVRERFGKEYGIPVF--AT-----LAEMMQH-VQ 64 (387)
T ss_dssp CEEEEEECCSHHHHTTHHHHHHHC---T--TEEEEEEECSC----HHHHHHHHHHHTCCEE--SS-----HHHHHHH-SC
T ss_pred ceEEEEEeCCHHHHHHHHHHHHhC---C--CeEEEEEEeCC----HHHHHHHHHHcCCCeE--CC-----HHHHHcC-CC
Confidence 5899999988 42 2 33443321 2 47888877543 2345678889999964 21 1233321 16
Q ss_pred CCEEEEEe
Q 024060 123 TDFLVLAR 130 (273)
Q Consensus 123 ~Dlvv~ag 130 (273)
+|+|+++.
T Consensus 65 vD~V~i~t 72 (387)
T 3moi_A 65 MDAVYIAS 72 (387)
T ss_dssp CSEEEECS
T ss_pred CCEEEEcC
Confidence 89888775
No 64
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}
Probab=74.78 E-value=3.2 Score=37.31 Aligned_cols=67 Identities=13% Similarity=0.198 Sum_probs=39.5
Q ss_pred CCceEEEEEECC-chh-HHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhc-
Q 024060 45 PKYKVAVLASKQ-EHC-LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ- 121 (273)
Q Consensus 45 ~~~kiav~~Sg~-g~~-l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~- 121 (273)
.++||+|+|.|. |.. +.+|.. .+ .+++++|+... .....++++++|++++ . .+.+++.
T Consensus 3 ~~~rvgiiG~G~~g~~~~~~l~~---~~--~~~l~av~d~~----~~~~~~~a~~~g~~~~--~--------~~~~~l~~ 63 (344)
T 3euw_A 3 LTLRIALFGAGRIGHVHAANIAA---NP--DLELVVIADPF----IEGAQRLAEANGAEAV--A--------SPDEVFAR 63 (344)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHH---CT--TEEEEEEECSS----HHHHHHHHHTTTCEEE--S--------SHHHHTTC
T ss_pred CceEEEEECCcHHHHHHHHHHHh---CC--CcEEEEEECCC----HHHHHHHHHHcCCcee--C--------CHHHHhcC
Confidence 458999999876 332 233322 12 47888776543 2345677888885543 2 1233454
Q ss_pred -CCCEEEEEe
Q 024060 122 -NTDFLVLAR 130 (273)
Q Consensus 122 -~~Dlvv~ag 130 (273)
++|+|+++.
T Consensus 64 ~~~D~V~i~t 73 (344)
T 3euw_A 64 DDIDGIVIGS 73 (344)
T ss_dssp SCCCEEEECS
T ss_pred CCCCEEEEeC
Confidence 678887765
No 65
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=74.23 E-value=3.4 Score=37.31 Aligned_cols=69 Identities=9% Similarity=0.117 Sum_probs=40.9
Q ss_pred CCceEEEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhc--C
Q 024060 45 PKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ--N 122 (273)
Q Consensus 45 ~~~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~--~ 122 (273)
.++||+|+|.|.-. ..++.++..- .++++++|+... .....++++++|++.+ .+ +.+++. +
T Consensus 4 ~~~~vgiiG~G~~g--~~~~~~l~~~-~~~~lvav~d~~----~~~~~~~~~~~g~~~~--~~--------~~~~l~~~~ 66 (354)
T 3db2_A 4 NPVGVAAIGLGRWA--YVMADAYTKS-EKLKLVTCYSRT----EDKREKFGKRYNCAGD--AT--------MEALLARED 66 (354)
T ss_dssp CCEEEEEECCSHHH--HHHHHHHTTC-SSEEEEEEECSS----HHHHHHHHHHHTCCCC--SS--------HHHHHHCSS
T ss_pred CcceEEEEccCHHH--HHHHHHHHhC-CCcEEEEEECCC----HHHHHHHHHHcCCCCc--CC--------HHHHhcCCC
Confidence 45899999987522 2233333321 147888776543 2346677888898863 21 223442 6
Q ss_pred CCEEEEEe
Q 024060 123 TDFLVLAR 130 (273)
Q Consensus 123 ~Dlvv~ag 130 (273)
+|+|+++.
T Consensus 67 ~D~V~i~t 74 (354)
T 3db2_A 67 VEMVIITV 74 (354)
T ss_dssp CCEEEECS
T ss_pred CCEEEEeC
Confidence 78888765
No 66
>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}
Probab=73.85 E-value=3.5 Score=36.98 Aligned_cols=72 Identities=6% Similarity=0.028 Sum_probs=42.4
Q ss_pred CceEEEEEECCc-h-hHHHHHHh--hhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhc
Q 024060 46 KYKVAVLASKQE-H-CLVDFLYG--WQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ 121 (273)
Q Consensus 46 ~~kiav~~Sg~g-~-~l~~ll~~--~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~ 121 (273)
+.||||+|.|.. . .+.++... ...-...++|++|.... .....++|+++|+|..+-+ +.++|+
T Consensus 6 klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~----~~~a~~~a~~~g~~~~~~d---------~~~ll~ 72 (390)
T 4h3v_A 6 NLGIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRD----AEAVRAAAGKLGWSTTETD---------WRTLLE 72 (390)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSS----HHHHHHHHHHHTCSEEESC---------HHHHTT
T ss_pred cCcEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCC----HHHHHHHHHHcCCCcccCC---------HHHHhc
Confidence 379999998752 2 23333322 11111135788776533 2446788999999965411 334554
Q ss_pred --CCCEEEEEe
Q 024060 122 --NTDFLVLAR 130 (273)
Q Consensus 122 --~~Dlvv~ag 130 (273)
++|.|+++.
T Consensus 73 ~~~iDaV~I~t 83 (390)
T 4h3v_A 73 RDDVQLVDVCT 83 (390)
T ss_dssp CTTCSEEEECS
T ss_pred CCCCCEEEEeC
Confidence 688888876
No 67
>1r0k_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH dependent, fosmidomycin, non- mevalonate pathway, oxidoreductase; 1.91A {Zymomonas mobilis} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1r0l_A*
Probab=73.65 E-value=11 Score=35.58 Aligned_cols=55 Identities=13% Similarity=0.155 Sum_probs=36.5
Q ss_pred CceEEEEEE-CC-chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEc
Q 024060 46 KYKVAVLAS-KQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 106 (273)
Q Consensus 46 ~~kiav~~S-g~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~ 106 (273)
|+||+++|| |+ |+..-+++... ++ ..+++++.++++ -..+.+.|+++++.+..+.
T Consensus 4 m~rI~ILGsTGSIG~~~l~vi~~~--p~-~~~v~al~ag~n---i~~l~~~~~~f~~~~v~v~ 60 (388)
T 1r0k_A 4 PRTVTVLGATGSIGHSTLDLIERN--LD-RYQVIALTANRN---VKDLADAAKRTNAKRAVIA 60 (388)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHT--GG-GEEEEEEEESSC---HHHHHHHHHHTTCSEEEES
T ss_pred ceEEEEECCCeEeHHHHHHHHHhC--cC-cEEEEEEEcCCC---HHHHHHHHHHcCCcEEEEc
Confidence 589999998 65 55544444432 11 267887767652 2346788899999887665
No 68
>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A
Probab=73.64 E-value=8.2 Score=36.89 Aligned_cols=53 Identities=8% Similarity=0.079 Sum_probs=29.5
Q ss_pred CCceEEEEEECC--chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCC
Q 024060 45 PKYKVAVLASKQ--EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIP 101 (273)
Q Consensus 45 ~~~kiav~~Sg~--g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp 101 (273)
.++||+|+|.|. |.--...+.++..-...+++++|+... .....++|+++|+|
T Consensus 38 ~~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~----~~~a~~~a~~~g~~ 92 (479)
T 2nvw_A 38 RPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPT----LKSSLQTIEQLQLK 92 (479)
T ss_dssp CCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSC----HHHHHHHHHHTTCT
T ss_pred CcCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCC----HHHHHHHHHHcCCC
Confidence 358999999832 221112222222210147888876533 23456788899997
No 69
>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}
Probab=73.64 E-value=4.6 Score=36.01 Aligned_cols=65 Identities=8% Similarity=0.072 Sum_probs=39.4
Q ss_pred CceEEEEEECC-chh-HHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhc--
Q 024060 46 KYKVAVLASKQ-EHC-LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ-- 121 (273)
Q Consensus 46 ~~kiav~~Sg~-g~~-l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~-- 121 (273)
++||+|+|.|. |.. +..+.+ .+ ++++++|+... .....++++++|++ + .+ +.+++.
T Consensus 3 ~~~vgiiG~G~~g~~~~~~l~~---~~--~~~l~av~d~~----~~~~~~~~~~~~~~-~--~~--------~~~~l~~~ 62 (331)
T 4hkt_A 3 TVRFGLLGAGRIGKVHAKAVSG---NA--DARLVAVADAF----PAAAEAIAGAYGCE-V--RT--------IDAIEAAA 62 (331)
T ss_dssp CEEEEEECCSHHHHHHHHHHHH---CT--TEEEEEEECSS----HHHHHHHHHHTTCE-E--CC--------HHHHHHCT
T ss_pred ceEEEEECCCHHHHHHHHHHhh---CC--CcEEEEEECCC----HHHHHHHHHHhCCC-c--CC--------HHHHhcCC
Confidence 58999999976 332 222222 12 47888776533 23467788899998 2 21 223343
Q ss_pred CCCEEEEEe
Q 024060 122 NTDFLVLAR 130 (273)
Q Consensus 122 ~~Dlvv~ag 130 (273)
++|+|+++.
T Consensus 63 ~~D~V~i~t 71 (331)
T 4hkt_A 63 DIDAVVICT 71 (331)
T ss_dssp TCCEEEECS
T ss_pred CCCEEEEeC
Confidence 688888765
No 70
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5
Probab=73.59 E-value=6.9 Score=35.21 Aligned_cols=71 Identities=23% Similarity=0.190 Sum_probs=41.9
Q ss_pred CCCCceEEEEEEC-C-ch-hHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHH
Q 024060 43 IDPKYKVAVLASK-Q-EH-CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLEL 119 (273)
Q Consensus 43 ~~~~~kiav~~Sg-~-g~-~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~ 119 (273)
+..+.||+|+|.| . |. .+.++.. -...+++++|+... .....++|+++|+|-.+ .+ +.++
T Consensus 15 ~~~~irvgiIG~G~~~g~~~~~~l~~----~~~~~~lvav~d~~----~~~~~~~a~~~~~~~~~-~~--------~~~l 77 (340)
T 1zh8_A 15 PLRKIRLGIVGCGIAARELHLPALKN----LSHLFEITAVTSRT----RSHAEEFAKMVGNPAVF-DS--------YEEL 77 (340)
T ss_dssp -CCCEEEEEECCSHHHHHTHHHHHHT----TTTTEEEEEEECSS----HHHHHHHHHHHSSCEEE-SC--------HHHH
T ss_pred CCCceeEEEEecCHHHHHHHHHHHHh----CCCceEEEEEEcCC----HHHHHHHHHHhCCCccc-CC--------HHHH
Confidence 3456899999988 3 32 3344322 11247888876543 23466788899985443 21 2334
Q ss_pred hc--CCCEEEEEe
Q 024060 120 VQ--NTDFLVLAR 130 (273)
Q Consensus 120 l~--~~Dlvv~ag 130 (273)
++ ++|+|+++.
T Consensus 78 l~~~~vD~V~i~t 90 (340)
T 1zh8_A 78 LESGLVDAVDLTL 90 (340)
T ss_dssp HHSSCCSEEEECC
T ss_pred hcCCCCCEEEEeC
Confidence 43 688888775
No 71
>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}
Probab=73.38 E-value=6.4 Score=36.24 Aligned_cols=72 Identities=13% Similarity=0.079 Sum_probs=43.3
Q ss_pred CCceEEEEEECC----ch-hHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCC--EEEEcCCCCchHHHHH
Q 024060 45 PKYKVAVLASKQ----EH-CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIP--YHYLCAKENEREEELL 117 (273)
Q Consensus 45 ~~~kiav~~Sg~----g~-~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp--~~~~~~~~~~~~~~~~ 117 (273)
+++||+|+|.|. |. .+.++.. .+ .+++++++++++ .....++|+++|+| -.+ . +-++++
T Consensus 11 ~~~rvgiiG~G~~~~ig~~h~~~~~~---~~--~~~lva~v~d~~---~~~a~~~a~~~g~~~~~~~-~-----~~~~ll 76 (398)
T 3dty_A 11 QPIRWAMVGGGSQSQIGYIHRCAALR---DN--TFVLVAGAFDID---PIRGSAFGEQLGVDSERCY-A-----DYLSMF 76 (398)
T ss_dssp SCEEEEEEECCTTCSSHHHHHHHHHG---GG--SEEEEEEECCSS---HHHHHHHHHHTTCCGGGBC-S-----SHHHHH
T ss_pred CcceEEEEcCCccchhHHHHHHHHhh---CC--CeEEEEEEeCCC---HHHHHHHHHHhCCCcceee-C-----CHHHHH
Confidence 458999999997 22 2333322 12 378887666653 23467888999997 222 1 123444
Q ss_pred HHh----cCCCEEEEEe
Q 024060 118 ELV----QNTDFLVLAR 130 (273)
Q Consensus 118 ~~l----~~~Dlvv~ag 130 (273)
+.- .++|+|+++.
T Consensus 77 ~~~~~~~~~vD~V~i~t 93 (398)
T 3dty_A 77 EQEARRADGIQAVSIAT 93 (398)
T ss_dssp HHHTTCTTCCSEEEEES
T ss_pred hcccccCCCCCEEEECC
Confidence 431 1489998876
No 72
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}
Probab=73.33 E-value=11 Score=33.60 Aligned_cols=70 Identities=9% Similarity=0.155 Sum_probs=39.2
Q ss_pred CCCceEEEEEECC-chh-HHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhc
Q 024060 44 DPKYKVAVLASKQ-EHC-LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ 121 (273)
Q Consensus 44 ~~~~kiav~~Sg~-g~~-l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~ 121 (273)
.+++||+|+|.|. |.. ++.+.+. .+ .+++++|+... .....++++++|++..+ .+ +.+++.
T Consensus 6 ~~~~~v~iiG~G~ig~~~~~~l~~~--~~--~~~~vav~d~~----~~~~~~~a~~~g~~~~~-~~--------~~~~l~ 68 (346)
T 3cea_A 6 RKPLRAAIIGLGRLGERHARHLVNK--IQ--GVKLVAACALD----SNQLEWAKNELGVETTY-TN--------YKDMID 68 (346)
T ss_dssp CCCEEEEEECCSTTHHHHHHHHHHT--CS--SEEEEEEECSC----HHHHHHHHHTTCCSEEE-SC--------HHHHHT
T ss_pred CCcceEEEEcCCHHHHHHHHHHHhc--CC--CcEEEEEecCC----HHHHHHHHHHhCCCccc-CC--------HHHHhc
Confidence 3568999999986 332 2333211 12 47887776543 23355677888986432 21 222343
Q ss_pred --CCCEEEEEe
Q 024060 122 --NTDFLVLAR 130 (273)
Q Consensus 122 --~~Dlvv~ag 130 (273)
++|+|+++.
T Consensus 69 ~~~~D~V~i~t 79 (346)
T 3cea_A 69 TENIDAIFIVA 79 (346)
T ss_dssp TSCCSEEEECS
T ss_pred CCCCCEEEEeC
Confidence 577777664
No 73
>3a06_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; MEP pathway, isoprene biosynthesis, metal- NADP, oxidoreductase; HET: NDP; 2.00A {Thermotoga maritima} PDB: 3a14_A*
Probab=72.34 E-value=9.9 Score=35.82 Aligned_cols=76 Identities=8% Similarity=0.123 Sum_probs=48.3
Q ss_pred ceEEEEEE-CC-chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCc----h-----HHH
Q 024060 47 YKVAVLAS-KQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENE----R-----EEE 115 (273)
Q Consensus 47 ~kiav~~S-g~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~----~-----~~~ 115 (273)
+||+|+|| |+ |++--+++.. . -.++++++.++++ -.-+.+.|++++..++.+.+.... + .+.
T Consensus 4 k~i~ILGsTGSIG~~tldVi~~---~-~~~~vvaL~a~~n---~~~l~~q~~~f~p~~v~v~~~~~~~~~l~~~~~G~~~ 76 (376)
T 3a06_A 4 RTLVILGATGSIGTQTLDVLKK---V-KGIRLIGISFHSN---LELAFKIVKEFNVKNVAITGDVEFEDSSINVWKGSHS 76 (376)
T ss_dssp EEEEEETTTSHHHHHHHHHHHH---S-CSEEEEEEEESSC---HHHHHHHHHHHTCCEEEECSSCCCCCSSSEEEESTTH
T ss_pred ceEEEECCCCHHHHHHHHHHHh---C-CCeEEEEEEccCC---HHHHHHHHHHcCCCEEEEccHHHHHHHHHHHccCHHH
Confidence 78999996 55 4443334443 2 1489999988762 245778889999988766532211 1 234
Q ss_pred HHHHhc--CCCEEEEE
Q 024060 116 LLELVQ--NTDFLVLA 129 (273)
Q Consensus 116 ~~~~l~--~~Dlvv~a 129 (273)
+.+.+. ++|+|+.+
T Consensus 77 l~el~~~~~~D~Vv~A 92 (376)
T 3a06_A 77 IEEMLEALKPDITMVA 92 (376)
T ss_dssp HHHHHHHHCCSEEEEC
T ss_pred HHHHhcCCCCCEEEEE
Confidence 455554 78999876
No 74
>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}
Probab=72.01 E-value=7.3 Score=32.79 Aligned_cols=67 Identities=12% Similarity=0.158 Sum_probs=39.5
Q ss_pred CCceEEEEEECC-chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCC
Q 024060 45 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 123 (273)
Q Consensus 45 ~~~kiav~~Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~ 123 (273)
.++||+|+|+|. |+.+...+.. .| +++..+ .+++ ...+.+++++.|+.... + . . +.++++
T Consensus 22 ~mmkI~IIG~G~mG~~la~~l~~--~g---~~V~~v-~~r~---~~~~~~l~~~~g~~~~~-~----~--~---~~~~~a 82 (220)
T 4huj_A 22 SMTTYAIIGAGAIGSALAERFTA--AQ---IPAIIA-NSRG---PASLSSVTDRFGASVKA-V----E--L---KDALQA 82 (220)
T ss_dssp GSCCEEEEECHHHHHHHHHHHHH--TT---CCEEEE-CTTC---GGGGHHHHHHHTTTEEE-C----C--H---HHHTTS
T ss_pred cCCEEEEECCCHHHHHHHHHHHh--CC---CEEEEE-ECCC---HHHHHHHHHHhCCCccc-C----h--H---HHHhcC
Confidence 358999999876 4444332221 23 466543 4442 23456777888887653 1 1 1 224589
Q ss_pred CEEEEEe
Q 024060 124 DFLVLAR 130 (273)
Q Consensus 124 Dlvv~ag 130 (273)
|+|+++-
T Consensus 83 DvVilav 89 (220)
T 4huj_A 83 DVVILAV 89 (220)
T ss_dssp SEEEEES
T ss_pred CEEEEeC
Confidence 9999885
No 75
>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A
Probab=71.93 E-value=8.3 Score=34.80 Aligned_cols=69 Identities=13% Similarity=0.134 Sum_probs=39.4
Q ss_pred CCceEEEEEECCc-h-hHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCC--EEEEcCCCCchHHHHHHHh
Q 024060 45 PKYKVAVLASKQE-H-CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIP--YHYLCAKENEREEELLELV 120 (273)
Q Consensus 45 ~~~kiav~~Sg~g-~-~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp--~~~~~~~~~~~~~~~~~~l 120 (273)
.++||+|+|.|.- . .+.++.. .+ .+++++|+... .....++++++|+| ...+.+ +.+++
T Consensus 5 ~~~~vgiiG~G~ig~~~~~~l~~---~~--~~~lv~v~d~~----~~~~~~~a~~~~~~~~~~~~~~--------~~~ll 67 (362)
T 1ydw_A 5 TQIRIGVMGCADIARKVSRAIHL---AP--NATISGVASRS----LEKAKAFATANNYPESTKIHGS--------YESLL 67 (362)
T ss_dssp -CEEEEEESCCTTHHHHHHHHHH---CT--TEEEEEEECSS----HHHHHHHHHHTTCCTTCEEESS--------HHHHH
T ss_pred CceEEEEECchHHHHHHHHHHhh---CC--CcEEEEEEcCC----HHHHHHHHHHhCCCCCCeeeCC--------HHHHh
Confidence 4589999999863 3 2333322 12 47888776543 23456788899974 222221 22334
Q ss_pred c--CCCEEEEEe
Q 024060 121 Q--NTDFLVLAR 130 (273)
Q Consensus 121 ~--~~Dlvv~ag 130 (273)
+ ++|+|+++.
T Consensus 68 ~~~~~D~V~i~t 79 (362)
T 1ydw_A 68 EDPEIDALYVPL 79 (362)
T ss_dssp HCTTCCEEEECC
T ss_pred cCCCCCEEEEcC
Confidence 3 578888765
No 76
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}
Probab=71.57 E-value=7.5 Score=34.86 Aligned_cols=69 Identities=12% Similarity=0.136 Sum_probs=40.5
Q ss_pred CceEEEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhc--CC
Q 024060 46 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ--NT 123 (273)
Q Consensus 46 ~~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~--~~ 123 (273)
++||+|+|.|... ..++..+.. ...+++++|+... .....++++++|++..+ .+ +.+++. ++
T Consensus 2 ~~rvgiIG~G~~g--~~~~~~l~~-~~~~~l~av~d~~----~~~~~~~~~~~~~~~~~-~~--------~~~ll~~~~~ 65 (344)
T 3ezy_A 2 SLRIGVIGLGRIG--TIHAENLKM-IDDAILYAISDVR----EDRLREMKEKLGVEKAY-KD--------PHELIEDPNV 65 (344)
T ss_dssp CEEEEEECCSHHH--HHHHHHGGG-STTEEEEEEECSC----HHHHHHHHHHHTCSEEE-SS--------HHHHHHCTTC
T ss_pred eeEEEEEcCCHHH--HHHHHHHHh-CCCcEEEEEECCC----HHHHHHHHHHhCCCcee-CC--------HHHHhcCCCC
Confidence 4799999987522 123333322 1147888776543 23456788899998443 21 223443 68
Q ss_pred CEEEEEe
Q 024060 124 DFLVLAR 130 (273)
Q Consensus 124 Dlvv~ag 130 (273)
|+|+++.
T Consensus 66 D~V~i~t 72 (344)
T 3ezy_A 66 DAVLVCS 72 (344)
T ss_dssp CEEEECS
T ss_pred CEEEEcC
Confidence 8888775
No 77
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=71.44 E-value=12 Score=35.38 Aligned_cols=62 Identities=16% Similarity=0.215 Sum_probs=41.3
Q ss_pred CCceEEEEEECCc--hhHHHHHHhhhcCCCCceEEEEeeCCCCCCC-----cHHHHHHHHcCCCEEEEc
Q 024060 45 PKYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPN-----SHVIRFLERHGIPYHYLC 106 (273)
Q Consensus 45 ~~~kiav~~Sg~g--~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~-----~~~~~~a~~~gIp~~~~~ 106 (273)
+..||+|..||+. ++|-.++..+.....+.++.+|..++.-..+ ..+.++|+++|||+++..
T Consensus 12 ~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~g~~v~avhvdhglr~~s~~~~~~v~~~~~~lgi~~~v~~ 80 (433)
T 1ni5_A 12 TSRQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGLSANADAWVTHCENVCQQWQVPLVVER 80 (433)
T ss_dssp TCSEEEEECCSBHHHHHHHHHHHHHHTTSTTCEEEEEEECCSCCSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCCEEEEEEcchHHHHHHHHHHHHHHHhcCCCeEEEEEEECCCCcccHHHHHHHHHHHHHcCCcEEEEE
Confidence 3468999999964 3455555443322135788888887643222 347889999999998876
No 78
>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A
Probab=70.40 E-value=10 Score=34.59 Aligned_cols=116 Identities=17% Similarity=0.164 Sum_probs=66.7
Q ss_pred chhHHHHHHhhh----cCCCCceEEEEeeCCCCCC--CcHHHHHHHHcCCCEEEEcCCC-Cc------hHHHHHHHhcCC
Q 024060 57 EHCLVDFLYGWQ----EGKLPVEITCVISNHDRGP--NSHVIRFLERHGIPYHYLCAKE-NE------REEELLELVQNT 123 (273)
Q Consensus 57 g~~l~~ll~~~~----~~~l~~~i~~Vvs~~~~~~--~~~~~~~a~~~gIp~~~~~~~~-~~------~~~~~~~~l~~~ 123 (273)
.|..|+|++.++ .|.+..--++.|-+- +.. ..+....+...|+.+..+..+. .. ...++.+.++++
T Consensus 126 ~HPtQaLaDl~Ti~e~~g~l~glkva~vGD~-~~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~g~~~d~~eav~~a 204 (304)
T 3r7f_A 126 QHPTQSLLDLMTIYEEFNTFKGLTVSIHGDI-KHSRVARSNAEVLTRLGARVLFSGPSEWQDEENTFGTYVSMDEAVESS 204 (304)
T ss_dssp CCHHHHHHHHHHHHHHHSCCTTCEEEEESCC-TTCHHHHHHHHHHHHTTCEEEEESCGGGSCTTCSSCEECCHHHHHHHC
T ss_pred cCcHHHHHHHHHHHHHhCCCCCCEEEEEcCC-CCcchHHHHHHHHHHcCCEEEEECCCccCcchhhcCccCCHHHHhCCC
Confidence 356677766421 255543333344332 111 2345677788898877665321 00 011344556689
Q ss_pred CEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccc-cccCChhHHhhcCCCeeEeecCCCCCCCC
Q 024060 124 DFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYF-NMILSGKFLRSYGKDVINIHHGLLPSFKG 190 (273)
Q Consensus 124 Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~-~~il~~~~l~~~~~~~iNiHpslLP~yRG 190 (273)
|+|..-.+.+ |++ +-.....-|+ .|-+..+.++..+..++-+||. |.+||
T Consensus 205 Dvvyt~~~q~------er~---------~~~~~~~~~~~~y~v~~~~l~~a~~~ai~mHcl--P~~Rg 255 (304)
T 3r7f_A 205 DVVMLLRIQN------ERH---------QSAVSQEGYLNKYGLTVERAERMKRHAIIMHPA--PVNRG 255 (304)
T ss_dssp SEEEECCCCT------TTC---------CSSCCSTTHHHHHSBCHHHHTTSCTTCEEECCS--CCCBT
T ss_pred CEEEeccchh------hcc---------ccchhHHHHhCCCccCHHHHhhcCCCCEEECCC--CCCCC
Confidence 9997765433 211 1011233455 4889999999888899999995 78887
No 79
>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*
Probab=69.30 E-value=29 Score=31.43 Aligned_cols=111 Identities=17% Similarity=0.163 Sum_probs=59.7
Q ss_pred CceEEEEEECC-chhHHHHHHhhhcCCC-CceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCC
Q 024060 46 KYKVAVLASKQ-EHCLVDFLYGWQEGKL-PVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 123 (273)
Q Consensus 46 ~~kiav~~Sg~-g~~l~~ll~~~~~~~l-~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~ 123 (273)
..||+++|-+. +.....++.++. .+ +.++. +++ ++.-...+ .++++.|..+....+ +.+.++++
T Consensus 149 gl~va~vGD~~~~rva~Sl~~~~~--~~~g~~v~-~~~-P~~~~~~~--~~~~~~g~~~~~~~d--------~~eav~~a 214 (299)
T 1pg5_A 149 GLVFALLGDLKYARTVNSLLRILT--RFRPKLVY-LIS-PQLLRARK--EILDELNYPVKEVEN--------PFEVINEV 214 (299)
T ss_dssp TCEEEEEECCSSCHHHHHHHHHGG--GSCCSEEE-EEC-CGGGCCCH--HHHTTCCSCEEEESC--------GGGTGGGC
T ss_pred CcEEEEECCCCCCchHHHHHHHHH--hCCCCEEE-EEC-CchhcCCH--HHHHHcCCeEEEeCC--------HHHHhcCC
Confidence 36788877653 233444555432 23 35543 233 22111111 125566776554331 22346689
Q ss_pred CEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCC
Q 024060 124 DFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGL 184 (273)
Q Consensus 124 Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpsl 184 (273)
|+|..-.|.. |++-+. +. .......|-+..+.++..+..++-+||.+
T Consensus 215 Dvvyt~~~q~------er~~~~---~~-----~~~~~~~y~v~~~~l~~a~~~ai~mH~lP 261 (299)
T 1pg5_A 215 DVLYVTRIQK------ERFVDE---ME-----YEKIKGSYIVSLDLANKMKKDSIILHPLP 261 (299)
T ss_dssp SEEEEECCCS------TTSSCH---HH-----HHHHGGGGSBCHHHHHTSCTTCEEECCSC
T ss_pred CEEEeCCccc------ccccCH---HH-----HHHhhcCcccCHHHHHhcCCCCEEECCCC
Confidence 9999988854 221000 00 00111247899999998888899999975
No 80
>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}
Probab=69.21 E-value=10 Score=33.70 Aligned_cols=68 Identities=16% Similarity=0.297 Sum_probs=38.2
Q ss_pred CceEEEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcC-CCEEEEcCCCCchHHHHHHHhc--C
Q 024060 46 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHG-IPYHYLCAKENEREEELLELVQ--N 122 (273)
Q Consensus 46 ~~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~g-Ip~~~~~~~~~~~~~~~~~~l~--~ 122 (273)
++||+|+|.|..... .++.+++.. ++++++|+..... ...++|++++ ++++ . .+.++++ +
T Consensus 4 ~~rvgiiG~G~~~~~-~~~~~l~~~--~~~lvav~d~~~~----~~~~~a~~~~~~~~~--~--------~~~~ll~~~~ 66 (336)
T 2p2s_A 4 KIRFAAIGLAHNHIY-DMCQQLIDA--GAELAGVFESDSD----NRAKFTSLFPSVPFA--A--------SAEQLITDAS 66 (336)
T ss_dssp CCEEEEECCSSTHHH-HHHHHHHHT--TCEEEEEECSCTT----SCHHHHHHSTTCCBC--S--------CHHHHHTCTT
T ss_pred ccEEEEECCChHHHH-HhhhhhcCC--CcEEEEEeCCCHH----HHHHHHHhcCCCccc--C--------CHHHHhhCCC
Confidence 589999999865421 223333222 4788888764422 2457778884 3332 1 1223443 5
Q ss_pred CCEEEEEe
Q 024060 123 TDFLVLAR 130 (273)
Q Consensus 123 ~Dlvv~ag 130 (273)
+|+|+++.
T Consensus 67 ~D~V~i~t 74 (336)
T 2p2s_A 67 IDLIACAV 74 (336)
T ss_dssp CCEEEECS
T ss_pred CCEEEEeC
Confidence 77777664
No 81
>3rh0_A Arsenate reductase; oxidoreductase; 1.72A {Corynebacterium glutamicum}
Probab=69.00 E-value=9.6 Score=30.92 Aligned_cols=84 Identities=17% Similarity=0.156 Sum_probs=45.7
Q ss_pred cCCCCCCceEEEEEECCc--hhH-HHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHH
Q 024060 40 VPDIDPKYKVAVLASKQE--HCL-VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEEL 116 (273)
Q Consensus 40 ~~~~~~~~kiav~~Sg~g--~~l-~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~ 116 (273)
+|....++||.|+.+|+. |.+ ++++.....+. .++.--=+....+.+....+.++++||++.....+ ...++
T Consensus 14 ~~~~~~~~~VLFVC~gN~cRSpmAEal~~~~~~~~--~~v~SAGt~~g~~~dp~a~~vl~e~Gidis~h~ar-~l~~~-- 88 (148)
T 3rh0_A 14 VPRGSHMKSVLFVCVGNGGKSQMAAALAQKYASDS--VEIHSAGTKPAQGLNQLSVESIAEVGADMSQGIPK-AIDPE-- 88 (148)
T ss_dssp ------CCEEEEEESSSSSHHHHHHHHHHHHCCTT--SEEEEEESSCCSSCCHHHHHHHHHTTCCCTTCCCC-BCCHH--
T ss_pred ccCcCCCCEEEEECCCchhHHHHHHHHHHHhcCCC--EEEEecccCCCCCCCHHHHHHHHHcCCCcCCCeee-ECCHH--
Confidence 556667889999998874 444 55776654333 34432222333335667889999999987421111 12222
Q ss_pred HHHhcCCCEEEEEe
Q 024060 117 LELVQNTDFLVLAR 130 (273)
Q Consensus 117 ~~~l~~~Dlvv~ag 130 (273)
.++++|+|+..-
T Consensus 89 --~~~~~DlIitM~ 100 (148)
T 3rh0_A 89 --LLRTVDRVVILG 100 (148)
T ss_dssp --HHHHCSEEEEES
T ss_pred --HhcCCCEEEEec
Confidence 123689999774
No 82
>4h31_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PE5; 1.70A {Vibrio vulnificus} PDB: 3upd_A*
Probab=68.05 E-value=16 Score=33.91 Aligned_cols=60 Identities=23% Similarity=0.284 Sum_probs=35.3
Q ss_pred HHHhcCCCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhc-CCCeeEeecCCCCCCCC
Q 024060 117 LELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSY-GKDVINIHHGLLPSFKG 190 (273)
Q Consensus 117 ~~~l~~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~-~~~~iNiHpslLP~yRG 190 (273)
.+.++++|+|..-.|...-- +++.| +........|-+..+.++.. +..++-+|| ||+++.
T Consensus 245 ~eav~~aDvvyt~~w~s~~~-~~~~~-----------~~~~~~~~~y~v~~~~l~~~ak~~~i~mH~--LP~~~n 305 (358)
T 4h31_A 245 AEGVQGCDFLYTDVWVSMGE-SPEAW-----------DERVALMKPYQVNMNVLKQTGNPNVKFMHC--LPAFHN 305 (358)
T ss_dssp HHHHTTCSEEEECCSSCTTS-CTTHH-----------HHHHHHHGGGCBCHHHHHHTTCTTCEEEEC--SCCCCS
T ss_pred HHHhccCcEEEEEEEEEccc-CchhH-----------HHHHHHHhCcccCHHHHHhcCCCCcEEECC--CCCCCC
Confidence 34566899998766643100 00000 11122233478899999864 557899999 588874
No 83
>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}
Probab=67.58 E-value=4.7 Score=37.56 Aligned_cols=73 Identities=5% Similarity=0.021 Sum_probs=41.1
Q ss_pred CCceEEEEEECCch-----hHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCC--EEEEcCCCCchHHHHH
Q 024060 45 PKYKVAVLASKQEH-----CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIP--YHYLCAKENEREEELL 117 (273)
Q Consensus 45 ~~~kiav~~Sg~g~-----~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp--~~~~~~~~~~~~~~~~ 117 (273)
+++||+|+|.|.++ .+.++.. .+ .+++++.|++++ .....++|+++|+| ..+ . +-++++
T Consensus 36 ~~~rvgiiG~G~~~~ig~~h~~~~~~---~~--~~~lva~v~d~~---~~~a~~~a~~~g~~~~~~~-~-----~~~~ll 101 (417)
T 3v5n_A 36 KRIRLGMVGGGSGAFIGAVHRIAARL---DD--HYELVAGALSST---PEKAEASGRELGLDPSRVY-S-----DFKEMA 101 (417)
T ss_dssp CCEEEEEESCC--CHHHHHHHHHHHH---TS--CEEEEEEECCSS---HHHHHHHHHHHTCCGGGBC-S-----CHHHHH
T ss_pred CcceEEEEcCCCchHHHHHHHHHHhh---CC--CcEEEEEEeCCC---HHHHHHHHHHcCCCccccc-C-----CHHHHH
Confidence 45899999998722 2233221 12 378887555553 23467888999997 221 1 123444
Q ss_pred HHh----cCCCEEEEEee
Q 024060 118 ELV----QNTDFLVLARY 131 (273)
Q Consensus 118 ~~l----~~~Dlvv~ag~ 131 (273)
+.- .++|+|+++.-
T Consensus 102 ~~~~~~~~~vD~V~I~tp 119 (417)
T 3v5n_A 102 IREAKLKNGIEAVAIVTP 119 (417)
T ss_dssp HHHHHCTTCCSEEEECSC
T ss_pred hcccccCCCCcEEEECCC
Confidence 431 25888887763
No 84
>2ho3_A Oxidoreductase, GFO/IDH/MOCA family; streptococcus pneumonia reductive methylation, structural genomics, PSI-2, protein initiative; HET: MLY; 2.00A {Streptococcus pneumoniae} PDB: 2ho5_A
Probab=66.46 E-value=7.8 Score=34.39 Aligned_cols=67 Identities=15% Similarity=0.174 Sum_probs=37.5
Q ss_pred CceEEEEEECC-chh-HHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHh-cC
Q 024060 46 KYKVAVLASKQ-EHC-LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELV-QN 122 (273)
Q Consensus 46 ~~kiav~~Sg~-g~~-l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l-~~ 122 (273)
|+||+|+|.|. |.. +..+.+ .+ ..++++|+... .....++++++|++..+ .+ -++ ++ .+
T Consensus 1 ~~~vgiiG~G~~g~~~~~~l~~---~~--~~~~~~v~d~~----~~~~~~~~~~~~~~~~~-~~-----~~~---~l~~~ 62 (325)
T 2ho3_A 1 MLKLGVIGTGAISHHFIEAAHT---SG--EYQLVAIYSRK----LETAATFASRYQNIQLF-DQ-----LEV---FFKSS 62 (325)
T ss_dssp CEEEEEECCSHHHHHHHHHHHH---TT--SEEEEEEECSS----HHHHHHHGGGSSSCEEE-SC-----HHH---HHTSS
T ss_pred CeEEEEEeCCHHHHHHHHHHHh---CC--CeEEEEEEeCC----HHHHHHHHHHcCCCeEe-CC-----HHH---HhCCC
Confidence 47999999875 222 233322 12 47888776433 22355677788875432 21 122 33 36
Q ss_pred CCEEEEEe
Q 024060 123 TDFLVLAR 130 (273)
Q Consensus 123 ~Dlvv~ag 130 (273)
+|+|+++.
T Consensus 63 ~D~V~i~t 70 (325)
T 2ho3_A 63 FDLVYIAS 70 (325)
T ss_dssp CSEEEECS
T ss_pred CCEEEEeC
Confidence 78887775
No 85
>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5
Probab=66.27 E-value=12 Score=33.11 Aligned_cols=47 Identities=15% Similarity=0.160 Sum_probs=28.9
Q ss_pred CceEEEEEECC-ch--hHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCC
Q 024060 46 KYKVAVLASKQ-EH--CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIP 101 (273)
Q Consensus 46 ~~kiav~~Sg~-g~--~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp 101 (273)
++||+|+|.|. |. .+..+.+ .+ ++++++|+.... ....++++++|++
T Consensus 5 ~~~vgiiG~G~~g~~~~~~~l~~---~~--~~~lvav~d~~~----~~~~~~~~~~g~~ 54 (319)
T 1tlt_A 5 KLRIGVVGLGGIAQKAWLPVLAA---AS--DWTLQGAWSPTR----AKALPICESWRIP 54 (319)
T ss_dssp CEEEEEECCSTHHHHTHHHHHHS---CS--SEEEEEEECSSC----TTHHHHHHHHTCC
T ss_pred cceEEEECCCHHHHHHHHHHHHh---CC--CeEEEEEECCCH----HHHHHHHHHcCCC
Confidence 58999999976 32 2233322 12 378877765432 2356778888988
No 86
>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A
Probab=66.02 E-value=8.9 Score=35.95 Aligned_cols=49 Identities=14% Similarity=0.083 Sum_probs=30.5
Q ss_pred CCceEEEEEE----CC-ch-hHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCC
Q 024060 45 PKYKVAVLAS----KQ-EH-CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIP 101 (273)
Q Consensus 45 ~~~kiav~~S----g~-g~-~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp 101 (273)
.++||+|+|. |. |. .+.+|.+. ...+++++|+... .....++|+++|+|
T Consensus 19 ~~irvgiIG~g~~gG~~g~~~~~~l~~~----~~~~~lvav~d~~----~~~~~~~a~~~g~~ 73 (438)
T 3btv_A 19 APIRVGFVGLNAAKGWAIKTHYPAILQL----SSQFQITALYSPK----IETSIATIQRLKLS 73 (438)
T ss_dssp CCEEEEEESCCTTSSSTTTTHHHHHHHT----TTTEEEEEEECSS----HHHHHHHHHHTTCT
T ss_pred CCCEEEEEcccCCCChHHHHHHHHHHhc----CCCeEEEEEEeCC----HHHHHHHHHHcCCC
Confidence 3589999998 44 33 34444321 0147888876543 23456788899997
No 87
>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1
Probab=65.03 E-value=16 Score=32.92 Aligned_cols=74 Identities=23% Similarity=0.289 Sum_probs=42.1
Q ss_pred CCceEEEEEECC-chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHh--c
Q 024060 45 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELV--Q 121 (273)
Q Consensus 45 ~~~kiav~~Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l--~ 121 (273)
++.||+|+|+|. |..+...+. +. ....++++|+... .+....++|+++|++... ..-+++++.. .
T Consensus 3 ~~irVaIIG~G~iG~~~~~~l~--~~-~~~~elvav~d~~---~~~~~~~~a~~~g~~~~~------~~~e~ll~~~~~~ 70 (312)
T 1nvm_B 3 QKLKVAIIGSGNIGTDLMIKVL--RN-AKYLEMGAMVGID---AASDGLARAQRMGVTTTY------AGVEGLIKLPEFA 70 (312)
T ss_dssp SCEEEEEECCSHHHHHHHHHHH--HH-CSSEEEEEEECSC---TTCHHHHHHHHTTCCEES------SHHHHHHHSGGGG
T ss_pred CCCEEEEEcCcHHHHHHHHHHH--hh-CcCeEEEEEEeCC---hhhhHHHHHHHcCCCccc------CCHHHHHhccCCC
Confidence 458999999875 333322221 11 1247888777544 223367889999988542 1123444331 2
Q ss_pred CCCEEEEEe
Q 024060 122 NTDFLVLAR 130 (273)
Q Consensus 122 ~~Dlvv~ag 130 (273)
++|+|+.+.
T Consensus 71 ~iDvV~~at 79 (312)
T 1nvm_B 71 DIDFVFDAT 79 (312)
T ss_dssp GEEEEEECS
T ss_pred CCcEEEECC
Confidence 578888764
No 88
>2cwd_A Low molecular weight phosphotyrosine protein PHOS; tyrosine phosphatase, structural genomics; 1.90A {Thermus thermophilus}
Probab=64.35 E-value=17 Score=29.45 Aligned_cols=81 Identities=14% Similarity=0.105 Sum_probs=45.8
Q ss_pred CCceEEEEEECCc--hhH-HHHHHhhhc--CC-CCceEEEEeeCC---CCCCCcHHHHHHHHcCCCEEEEcCCCCchHHH
Q 024060 45 PKYKVAVLASKQE--HCL-VDFLYGWQE--GK-LPVEITCVISNH---DRGPNSHVIRFLERHGIPYHYLCAKENEREEE 115 (273)
Q Consensus 45 ~~~kiav~~Sg~g--~~l-~~ll~~~~~--~~-l~~~i~~Vvs~~---~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~ 115 (273)
+++||.|+.+|+. |.+ ++++..... |- -..+|.--=+.. ..+.+....+.++++||++. ...+ ...++
T Consensus 3 ~~~~VLFVC~gN~cRSpmAEal~~~~~~~~gl~~~~~v~SAGt~~~~~g~~~~p~a~~~l~e~Gid~s-~~ar-~l~~~- 79 (161)
T 2cwd_A 3 RPVRVLFVCLGNICRSPMAEGIFRKLLKERGLEDRFEVDSAGTGAWHVGEPMDPRARRVLEEEGAYFP-HVAR-RLTRE- 79 (161)
T ss_dssp CCEEEEEEESSSSSHHHHHHHHHHHHHHHHTCTTTEEEEEEESSCTTTTCCCCHHHHHHHHHHTCCCC-CCCC-BCCHH-
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHHHHHHcCCCCcEEEEecccCCCccCCCCCHHHHHHHHHcCcCcc-cccc-CCCHh-
Confidence 5689999999884 443 456655332 21 023332222222 23346678899999999986 3322 22222
Q ss_pred HHHHhcCCCEEEEEee
Q 024060 116 LLELVQNTDFLVLARY 131 (273)
Q Consensus 116 ~~~~l~~~Dlvv~ag~ 131 (273)
.+.++|+||...-
T Consensus 80 ---~~~~~DlIi~M~~ 92 (161)
T 2cwd_A 80 ---DVLAYDHILVMDR 92 (161)
T ss_dssp ---HHHHCSEEEESSH
T ss_pred ---HhccCCEEEECCh
Confidence 2236899997653
No 89
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}
Probab=63.31 E-value=29 Score=31.26 Aligned_cols=70 Identities=11% Similarity=0.130 Sum_probs=41.3
Q ss_pred CCceEEEEEECC-ch-hHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhc-
Q 024060 45 PKYKVAVLASKQ-EH-CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ- 121 (273)
Q Consensus 45 ~~~kiav~~Sg~-g~-~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~- 121 (273)
.++||+|+|.|. |. .+.++.. . ...+++++|+... .....++++++|++...+.. +.+++.
T Consensus 22 ~~~rvgiIG~G~~g~~~~~~l~~---~-~~~~~lvav~d~~----~~~~~~~a~~~g~~~~~~~~--------~~~ll~~ 85 (357)
T 3ec7_A 22 MTLKAGIVGIGMIGSDHLRRLAN---T-VSGVEVVAVCDIV----AGRAQAALDKYAIEAKDYND--------YHDLIND 85 (357)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHH---T-CTTEEEEEEECSS----TTHHHHHHHHHTCCCEEESS--------HHHHHHC
T ss_pred CeeeEEEECCcHHHHHHHHHHHh---h-CCCcEEEEEEeCC----HHHHHHHHHHhCCCCeeeCC--------HHHHhcC
Confidence 357999999876 32 2333331 1 1247888877543 23467888999974433331 223443
Q ss_pred -CCCEEEEEe
Q 024060 122 -NTDFLVLAR 130 (273)
Q Consensus 122 -~~Dlvv~ag 130 (273)
++|+|+++.
T Consensus 86 ~~~D~V~i~t 95 (357)
T 3ec7_A 86 KDVEVVIITA 95 (357)
T ss_dssp TTCCEEEECS
T ss_pred CCCCEEEEcC
Confidence 688888775
No 90
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=63.14 E-value=9.3 Score=27.24 Aligned_cols=30 Identities=17% Similarity=0.160 Sum_probs=25.8
Q ss_pred eeEEEEEEcCCCCCChHhHHHHHHHHHHHhc
Q 024060 2 IKMCIEFIFDPIKWPREQMDEDFFKLSKMFN 32 (273)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~l~~~f~~l~~~~~ 32 (273)
++|+++++.++ ....+++.+++.+++.+++
T Consensus 45 ~~~~i~v~~~~-~~~l~~l~~~L~~~~~~~~ 74 (91)
T 1zpv_A 45 FTMMAVVSSDE-KQDFTYLRNEFEAFGQTLN 74 (91)
T ss_dssp EEEEEEEEESS-CCCHHHHHHHHHHHHHHHT
T ss_pred EEEEEEEEeCC-CCCHHHHHHHHHHHHHHcC
Confidence 68999998876 5678999999999998874
No 91
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}
Probab=62.80 E-value=7.9 Score=35.13 Aligned_cols=68 Identities=10% Similarity=0.074 Sum_probs=38.1
Q ss_pred CCceEEEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhc--C
Q 024060 45 PKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ--N 122 (273)
Q Consensus 45 ~~~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~--~ 122 (273)
+++||+|+|.|.-.. ..+..+... ..+++++|+... ..-.+.|+++|++++ . + +.+++. +
T Consensus 4 ~~~~vgiiG~G~~g~--~~~~~l~~~-~~~~l~av~d~~-----~~~~~~a~~~g~~~~--~-----~---~~~ll~~~~ 65 (359)
T 3e18_A 4 KKYQLVIVGYGGMGS--YHVTLASAA-DNLEVHGVFDIL-----AEKREAAAQKGLKIY--E-----S---YEAVLADEK 65 (359)
T ss_dssp CCEEEEEECCSHHHH--HHHHHHHTS-TTEEEEEEECSS-----HHHHHHHHTTTCCBC--S-----C---HHHHHHCTT
T ss_pred CcCcEEEECcCHHHH--HHHHHHHhC-CCcEEEEEEcCC-----HHHHHHHHhcCCcee--C-----C---HHHHhcCCC
Confidence 358999999885221 122222221 147888877543 122456778888754 1 1 223343 6
Q ss_pred CCEEEEEe
Q 024060 123 TDFLVLAR 130 (273)
Q Consensus 123 ~Dlvv~ag 130 (273)
+|+|+++.
T Consensus 66 ~D~V~i~t 73 (359)
T 3e18_A 66 VDAVLIAT 73 (359)
T ss_dssp CCEEEECS
T ss_pred CCEEEEcC
Confidence 78888775
No 92
>1js1_X Transcarbamylase; alpha/beta topology, two domains, transferase; 2.00A {Bacteroides fragilis} SCOP: c.78.1.1 c.78.1.1 PDB: 2fg6_X* 2fg7_X* 2g7m_X*
Probab=61.04 E-value=24 Score=32.38 Aligned_cols=115 Identities=10% Similarity=0.098 Sum_probs=68.4
Q ss_pred CchhHHHHHHhhh----cC--CCCceEEEEeeCCCCCC----CcHHHHHHHHcCCCEEEEcCCC-CchH---------HH
Q 024060 56 QEHCLVDFLYGWQ----EG--KLPVEITCVISNHDRGP----NSHVIRFLERHGIPYHYLCAKE-NERE---------EE 115 (273)
Q Consensus 56 ~g~~l~~ll~~~~----~~--~l~~~i~~Vvs~~~~~~----~~~~~~~a~~~gIp~~~~~~~~-~~~~---------~~ 115 (273)
..+..|+|++.++ .| .+. +...+..+++.. ..+....+.+.|+.+..+..+. ...+ .+
T Consensus 145 ~~HPtQaLaDl~Ti~e~~g~~~l~--l~ia~a~~~~vGD~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~d 222 (324)
T 1js1_X 145 TRHPLQSFADLITIEEYKKTARPK--VVMTWAPHPRPLPQAVPNSFAEWMNATDYEFVITHPEGYELDPKFVGNARVEYD 222 (324)
T ss_dssp SCCHHHHHHHHHHHHHHCSSSSCE--EEEECCCCSSCCCSHHHHHHHHHHHTSSSEEEEECCTTCCCCHHHHTTCEEESC
T ss_pred CCCcHHHHHHHHHHHHHcCCCCee--EEEEEEcccccCCcchHHHHHHHHHHCCCEEEEeCCcccCCChhhccceEEECC
Confidence 3467777776522 24 443 444452222221 1345677788899887766432 1111 12
Q ss_pred HHHHhcCCCEEEEEeecCCcchhhHhhhhhhhhhhh--cccCcccccccccCChhHHhhcCCCeeEeecCCCCCCCCC
Q 024060 116 LLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESL--SSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG 191 (273)
Q Consensus 116 ~~~~l~~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~--~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~ 191 (273)
+.+.++++|+|..-.|... .... ++... +-.|.+..+.++..+ .++-+|| ||.+||.
T Consensus 223 ~~eav~~aDvvy~~~w~s~-------------g~~~~~~~~~r---~~~y~vt~e~l~~a~-~ai~MHc--LP~~Rg~ 281 (324)
T 1js1_X 223 QMKAFEGADFIYAKNWAAY-------------TGDNYGQILST---DRNWTVGDRQMAVTN-NAYFMHC--LPVRRNM 281 (324)
T ss_dssp HHHHHTTCSEEEECCCCCC-------------STTCTTCCCCC---CTTSSBCHHHHTTSS-SCEEECC--SCCCBTT
T ss_pred HHHHhCCCCEEEecCcccC-------------CCccccchHHH---hcCcccCHHHHHhcC-CcEEECC--CCCCCCc
Confidence 3455668999988777541 0011 12222 466899999999888 8999997 5999874
No 93
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=59.38 E-value=27 Score=28.65 Aligned_cols=28 Identities=7% Similarity=0.051 Sum_probs=22.9
Q ss_pred eeEEEEEEcCCCCCChHhHHHHHHHHHHHh
Q 024060 2 IKMCIEFIFDPIKWPREQMDEDFFKLSKMF 31 (273)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~l~~~f~~l~~~~ 31 (273)
|+|+++|+.+. ...++|+++|.+++.++
T Consensus 46 f~~~~~v~~~~--~~~~~l~~~L~~~~~~~ 73 (192)
T 1u8s_A 46 FTLLMLISGSP--SNITRVETTLPLLGQQH 73 (192)
T ss_dssp EEEEEEEEECH--HHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEecCC--CCHHHHHHHHHHHHHhc
Confidence 78999998754 35689999999999877
No 94
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=57.82 E-value=19 Score=27.47 Aligned_cols=69 Identities=19% Similarity=0.273 Sum_probs=36.9
Q ss_pred CceEEEEEECC-chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHh--cC
Q 024060 46 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELV--QN 122 (273)
Q Consensus 46 ~~kiav~~Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l--~~ 122 (273)
+++|+|+|.|. |..+...+.. .| ++++++-.+ ....+.+.+.|+.+...+. .+++.++.+ .+
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~--~g---~~V~~id~~------~~~~~~~~~~~~~~~~gd~----~~~~~l~~~~~~~ 70 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTA--AG---KKVLAVDKS------KEKIELLEDEGFDAVIADP----TDESFYRSLDLEG 70 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHH--TT---CCEEEEESC------HHHHHHHHHTTCEEEECCT----TCHHHHHHSCCTT
T ss_pred CCEEEEECCCHHHHHHHHHHHH--CC---CeEEEEECC------HHHHHHHHHCCCcEEECCC----CCHHHHHhCCccc
Confidence 46899998765 4444333332 23 566533222 2234555667887765442 233444443 37
Q ss_pred CCEEEEE
Q 024060 123 TDFLVLA 129 (273)
Q Consensus 123 ~Dlvv~a 129 (273)
+|+++++
T Consensus 71 ~d~vi~~ 77 (141)
T 3llv_A 71 VSAVLIT 77 (141)
T ss_dssp CSEEEEC
T ss_pred CCEEEEe
Confidence 8988764
No 95
>4etn_A LMPTP, low molecular weight protein-tyrosine-phosphatase; dephosphorylation, hydrolase; 1.10A {Bacillus subtilis} PDB: 4eti_A 1zgg_A
Probab=57.81 E-value=15 Score=30.86 Aligned_cols=79 Identities=13% Similarity=0.169 Sum_probs=44.2
Q ss_pred CCceEEEEEECCc--hhH-HHHHHhhhc--CCCCceEEEEeeC--CCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHH
Q 024060 45 PKYKVAVLASKQE--HCL-VDFLYGWQE--GKLPVEITCVISN--HDRGPNSHVIRFLERHGIPYHYLCAKENEREEELL 117 (273)
Q Consensus 45 ~~~kiav~~Sg~g--~~l-~~ll~~~~~--~~l~~~i~~Vvs~--~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~ 117 (273)
.++||.|+.+|+. |.+ ++++..... | +..+|.--=+. +..+.+...++.++++||++. ...+ ...++.
T Consensus 33 ~~~~VLFVC~gNiCRSpmAEai~r~~~~~~g-~~~~v~SAGt~~~~G~~~dp~a~~vl~e~Gidis-hrar-~lt~~d-- 107 (184)
T 4etn_A 33 GSMDIIFVCTGNTSRSPMAEALFKSIAEREG-LNVNVRSAGVFASPNGKATPHAVEALFEKHIALN-HVSS-PLTEEL-- 107 (184)
T ss_dssp -CEEEEEEESSSSSHHHHHHHHHHHHHHHHT-CCEEEEEEETTCCTTCBCCHHHHHHHHHTTCCCC-CBCC-BCCHHH--
T ss_pred CCCEEEEECCCchhHHHHHHHHHHHHHHhcC-CcEEEEeeecCCcCCCCCCHHHHHHHHHcCCCch-hccC-cCCHHH--
Confidence 4689999999874 443 445554322 2 23444322222 222345668899999999986 3222 122222
Q ss_pred HHhcCCCEEEEEe
Q 024060 118 ELVQNTDFLVLAR 130 (273)
Q Consensus 118 ~~l~~~Dlvv~ag 130 (273)
+..+|+||...
T Consensus 108 --~~~~DlIltMd 118 (184)
T 4etn_A 108 --MESADLVLAMT 118 (184)
T ss_dssp --HHHCSEEEESS
T ss_pred --cCCCCEEEEcC
Confidence 23689999765
No 96
>3q98_A Transcarbamylase; rossmann fold, transferase; 2.00A {Escherichia coli}
Probab=57.73 E-value=70 Score=30.13 Aligned_cols=129 Identities=10% Similarity=0.107 Sum_probs=67.3
Q ss_pred CceEEEEEE-----CCchh-HHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHH----HHHHHcCCCEEEEcCCCCchHHH
Q 024060 46 KYKVAVLAS-----KQEHC-LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVI----RFLERHGIPYHYLCAKENEREEE 115 (273)
Q Consensus 46 ~~kiav~~S-----g~g~~-l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~----~~a~~~gIp~~~~~~~~~~~~~~ 115 (273)
..||++++- |.+.+ ...++.++. .++.++. +++.+.-.....+. ++|++.|..+....+
T Consensus 191 Glkva~vgd~~~~~G~~nnVa~Sli~~~~--~lG~~v~-~~~P~~~~~~~~~~~~a~~~a~~~G~~i~~~~d-------- 259 (399)
T 3q98_A 191 GKKIAMTWAYSPSYGKPLSVPQGIIGLMT--RFGMDVT-LAHPEGYDLIPDVVEVAKNNAKASGGSFRQVTS-------- 259 (399)
T ss_dssp TCEEEEECCCCSSCCCCTHHHHHHHHHHG--GGTCEEE-EECCTTCCCCHHHHHHHHHHHHHHTCEEEEESC--------
T ss_pred CCEEEEEEecccccCcchHHHHHHHHHHH--HcCCEEE-EECCcccCCCHHHHHHHHHHHHHcCCEEEEEcC--------
Confidence 468998863 44433 355555442 2345653 33333111223333 456678887765431
Q ss_pred HHHHhcCCCEEEEEeecCCcchhhHhhh-----hhhhhhhhccc--CcccccccccCChhHHhhcCC-CeeEeecCCCCC
Q 024060 116 LLELVQNTDFLVLARYMQPVPLQKEAYL-----GYKLLESLSSK--GSLTSYFNMILSGKFLRSYGK-DVINIHHGLLPS 187 (273)
Q Consensus 116 ~~~~l~~~Dlvv~ag~~~~~p~~~~~~~-----~~~~~~~~~~~--~~~~~y~~~il~~~~l~~~~~-~~iNiHpslLP~ 187 (273)
+.+.++++|+|..-.|..+ -.+.|+.. +++-.+..+-. .+...+..|.+..++++..+. .++-+|| ||+
T Consensus 260 ~~eav~~aDvVytd~W~Sm-g~~~er~~~~~~~~~~~~~~~e~~~~~r~~~~~~yqVn~elm~~a~~~daifMHc--LPa 336 (399)
T 3q98_A 260 MEEAFKDADIVYPKSWAPY-KVMEERTELLRANDHEGLKALEKQCLAQNAQHKDWHCTEEMMELTRDGEALYMHC--LPA 336 (399)
T ss_dssp HHHHHTTCSEEEECCCCCH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTTCCBCHHHHHTSGGGCCEECCC--SSC
T ss_pred HHHHhCCCCEEEecCcccc-chhhhhhhhccccchhhhhhhhhhhhHHHHHccCcEECHHHHhhcCCCCcEEECC--CCC
Confidence 3456779999988776421 01223221 00000000000 011223358999999988764 6899999 588
Q ss_pred C
Q 024060 188 F 188 (273)
Q Consensus 188 y 188 (273)
+
T Consensus 337 ~ 337 (399)
T 3q98_A 337 D 337 (399)
T ss_dssp C
T ss_pred C
Confidence 8
No 97
>3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus}
Probab=56.73 E-value=15 Score=33.17 Aligned_cols=117 Identities=14% Similarity=0.062 Sum_probs=63.4
Q ss_pred chhHHHHHHhhh----cCCCCceEEEEeeCCC-CCCCcHHHHHHHHcCCCEEEEcCCCC-ch---------HHHHHHHhc
Q 024060 57 EHCLVDFLYGWQ----EGKLPVEITCVISNHD-RGPNSHVIRFLERHGIPYHYLCAKEN-ER---------EEELLELVQ 121 (273)
Q Consensus 57 g~~l~~ll~~~~----~~~l~~~i~~Vvs~~~-~~~~~~~~~~a~~~gIp~~~~~~~~~-~~---------~~~~~~~l~ 121 (273)
.|..|+|++.++ .|.+..--++.+-+-. ..-..+....+...|..+..+..+.- .. ..++.+.++
T Consensus 125 ~HPtQaLaDl~Ti~e~~g~l~gl~va~vGDl~~~rva~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~g~~~~~d~~eav~ 204 (291)
T 3d6n_B 125 QHPSQGLIDFFTIKEHFGEVKDLRVLYVGDIKHSRVFRSGAPLLNMFGAKIGVCGPKTLIPRDVEVFKVDVFDDVDKGID 204 (291)
T ss_dssp BCHHHHHHHHHHHHHHHSCCTTCEEEEESCCTTCHHHHHHHHHHHHTTCEEEEESCGGGSCTTGGGGCEEEESSHHHHHH
T ss_pred cCcHHHHHHHHHHHHHhCCcCCcEEEEECCCCCCchHHHHHHHHHHCCCEEEEECCchhCCchHHHCCCEEEcCHHHHhC
Confidence 456666665421 2555533344454410 11123456667788888776653210 00 112345566
Q ss_pred CCCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccc-cccCChhHHhhcCCCeeEeecCCCCCCCCC
Q 024060 122 NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYF-NMILSGKFLRSYGKDVINIHHGLLPSFKGG 191 (273)
Q Consensus 122 ~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~-~~il~~~~l~~~~~~~iNiHpslLP~yRG~ 191 (273)
++|+|.. -|-++ +++- .-+. ....-|+ .|-+..+.++..+ +-+|| ||.+||.
T Consensus 205 ~aDvvy~-~~~q~-----er~~------~~~~-~~~~~~~~~y~v~~~~l~~a~---i~mH~--lP~~Rg~ 257 (291)
T 3d6n_B 205 WADVVIW-LRLQK-----ERQK------ENYI-PSESSYFKQFGLTKERFEKVK---LYMHP--GPVNRNV 257 (291)
T ss_dssp HCSEEEE-CCCCT-----HHHH------TTSS-SCHHHHHHHHSBCHHHHTTCC---CEECS--SCCCBTT
T ss_pred CCCEEEE-eCccc-----Cccc------cccc-hhHHHHHhhcCcCHHHHHhcc---cccCC--CCCCCCc
Confidence 8999988 66651 1100 0001 1111244 3789999998776 88999 6999873
No 98
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=56.59 E-value=18 Score=32.38 Aligned_cols=61 Identities=13% Similarity=0.087 Sum_probs=39.2
Q ss_pred CCceEEEEEECCc--hhHHHHHHhhhcCCCCce-EEEEeeCCCCCC-----CcHHHHHHHHcCCCEEEEc
Q 024060 45 PKYKVAVLASKQE--HCLVDFLYGWQEGKLPVE-ITCVISNHDRGP-----NSHVIRFLERHGIPYHYLC 106 (273)
Q Consensus 45 ~~~kiav~~Sg~g--~~l~~ll~~~~~~~l~~~-i~~Vvs~~~~~~-----~~~~~~~a~~~gIp~~~~~ 106 (273)
+..||+|..||+. +.|-.++.... ..++.+ +.+|..++.-.. ...+.++|+++|||++.+.
T Consensus 23 ~~~~vlva~SGG~DS~~Ll~ll~~~~-~~~g~~~v~av~vd~g~r~~s~~~~~~v~~~a~~lgi~~~v~~ 91 (317)
T 1wy5_A 23 GERRVLIAFSGGVDSVVLTDVLLKLK-NYFSLKEVALAHFNHMLRESAERDEEFCKEFAKERNMKIFVGK 91 (317)
T ss_dssp SCCEEEEECCSSHHHHHHHHHHHHST-TTTTCSEEEEEEEECCSSTHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCEEEEEecchHHHHHHHHHHHHHH-HHcCCCEEEEEEEECCCCcccHHHHHHHHHHHHHcCCcEEEEE
Confidence 4578999999964 34444444322 123467 777776653221 1347889999999998876
No 99
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
Probab=56.17 E-value=15 Score=33.37 Aligned_cols=71 Identities=11% Similarity=0.123 Sum_probs=35.9
Q ss_pred CCCceEEEEEECC-chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcC
Q 024060 44 DPKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQN 122 (273)
Q Consensus 44 ~~~~kiav~~Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~ 122 (273)
.++|||+|+|+|. |+.....| .+ ..+|..+ ..+ ..-++.++ ..++...++. .+.+++.+.+++
T Consensus 14 g~~mkilvlGaG~vG~~~~~~L---~~---~~~v~~~--~~~----~~~~~~~~-~~~~~~~~d~---~d~~~l~~~~~~ 77 (365)
T 3abi_A 14 GRHMKVLILGAGNIGRAIAWDL---KD---EFDVYIG--DVN----NENLEKVK-EFATPLKVDA---SNFDKLVEVMKE 77 (365)
T ss_dssp --CCEEEEECCSHHHHHHHHHH---TT---TSEEEEE--ESC----HHHHHHHT-TTSEEEECCT---TCHHHHHHHHTT
T ss_pred CCccEEEEECCCHHHHHHHHHH---hc---CCCeEEE--EcC----HHHHHHHh-ccCCcEEEec---CCHHHHHHHHhC
Confidence 3568999999864 33333233 22 2455422 221 11122222 2344444442 234567777889
Q ss_pred CCEEEEEe
Q 024060 123 TDFLVLAR 130 (273)
Q Consensus 123 ~Dlvv~ag 130 (273)
+|+||.+-
T Consensus 78 ~DvVi~~~ 85 (365)
T 3abi_A 78 FELVIGAL 85 (365)
T ss_dssp CSEEEECC
T ss_pred CCEEEEec
Confidence 99998764
No 100
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=55.18 E-value=15 Score=30.47 Aligned_cols=69 Identities=13% Similarity=0.169 Sum_probs=35.5
Q ss_pred ceEEEEEECC-chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHH--hcCC
Q 024060 47 YKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLEL--VQNT 123 (273)
Q Consensus 47 ~kiav~~Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~--l~~~ 123 (273)
|||+|+|.|. |..+...|.. .| ++++++ ... ...+.+++++.|+++...+. .+++.++. +.++
T Consensus 1 M~iiIiG~G~~G~~la~~L~~--~g---~~v~vi-d~~----~~~~~~l~~~~~~~~i~gd~----~~~~~l~~a~i~~a 66 (218)
T 3l4b_C 1 MKVIIIGGETTAYYLARSMLS--RK---YGVVII-NKD----RELCEEFAKKLKATIIHGDG----SHKEILRDAEVSKN 66 (218)
T ss_dssp CCEEEECCHHHHHHHHHHHHH--TT---CCEEEE-ESC----HHHHHHHHHHSSSEEEESCT----TSHHHHHHHTCCTT
T ss_pred CEEEEECCCHHHHHHHHHHHh--CC---CeEEEE-ECC----HHHHHHHHHHcCCeEEEcCC----CCHHHHHhcCcccC
Confidence 5788888654 3444333322 23 566533 322 12344556667888765432 12333333 3478
Q ss_pred CEEEEE
Q 024060 124 DFLVLA 129 (273)
Q Consensus 124 Dlvv~a 129 (273)
|.++++
T Consensus 67 d~vi~~ 72 (218)
T 3l4b_C 67 DVVVIL 72 (218)
T ss_dssp CEEEEC
T ss_pred CEEEEe
Confidence 887765
No 101
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*
Probab=54.87 E-value=21 Score=31.70 Aligned_cols=33 Identities=6% Similarity=-0.126 Sum_probs=20.2
Q ss_pred CCceEEEEEEC-C-ch-hHHHHHHhhhcCCCCceEEEEeeCC
Q 024060 45 PKYKVAVLASK-Q-EH-CLVDFLYGWQEGKLPVEITCVISNH 83 (273)
Q Consensus 45 ~~~kiav~~Sg-~-g~-~l~~ll~~~~~~~l~~~i~~Vvs~~ 83 (273)
+|+||+|+|.| . +. .+.++.+ . +.++++|+...
T Consensus 2 ~mirvgiIG~gG~i~~~h~~~l~~----~--~~~lvav~d~~ 37 (312)
T 3o9z_A 2 HMTRFALTGLAGYIAPRHLKAIKE----V--GGVLVASLDPA 37 (312)
T ss_dssp -CCEEEEECTTSSSHHHHHHHHHH----T--TCEEEEEECSS
T ss_pred CceEEEEECCChHHHHHHHHHHHh----C--CCEEEEEEcCC
Confidence 57899999984 3 22 3344332 2 47888887544
No 102
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=54.23 E-value=27 Score=29.13 Aligned_cols=57 Identities=12% Similarity=-0.083 Sum_probs=37.3
Q ss_pred CceEEEEEECCc-h-hHHHHHHhhhcCCCCceEEEEeeCCCCC-CCcHHHHHHHHcCCCEEEEcC
Q 024060 46 KYKVAVLASKQE-H-CLVDFLYGWQEGKLPVEITCVISNHDRG-PNSHVIRFLERHGIPYHYLCA 107 (273)
Q Consensus 46 ~~kiav~~Sg~g-~-~l~~ll~~~~~~~l~~~i~~Vvs~~~~~-~~~~~~~~a~~~gIp~~~~~~ 107 (273)
+.|++|..||+- | .+..++.. . ..++.++..+.... ....+.++|++.|||++.++-
T Consensus 6 ~~kv~v~~SGG~DS~~ll~ll~~--~---g~~v~~~~v~~~~~~~~~~~~~~a~~lgi~~~~~~~ 65 (203)
T 3k32_A 6 LMDVHVLFSGGKDSSLSAVILKK--L---GYNPHLITINFGVIPSYKLAEETAKILGFKHKVITL 65 (203)
T ss_dssp CEEEEEECCCSHHHHHHHHHHHH--T---TEEEEEEEEECSSSCTTHHHHHHHHHHTCEEEEEEC
T ss_pred CCeEEEEEECcHHHHHHHHHHHH--c---CCCeEEEEEeCCCchHHHHHHHHHHHhCCCEEEEEC
Confidence 468999999964 3 33334432 2 36777776555322 235678999999999988763
No 103
>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A
Probab=53.74 E-value=51 Score=30.25 Aligned_cols=163 Identities=11% Similarity=0.129 Sum_probs=89.8
Q ss_pred CceEEEEEECC-chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCCC
Q 024060 46 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 124 (273)
Q Consensus 46 ~~kiav~~Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~D 124 (273)
.++|+|+|.|. |..+...+.++ ..+|. +.++... -.+.+.+.|+... . ++.++++++|
T Consensus 164 gktvGIIG~G~IG~~vA~~l~~~-----G~~V~--~~dr~~~----~~~~~~~~g~~~~--~--------~l~ell~~aD 222 (351)
T 3jtm_A 164 GKTIGTVGAGRIGKLLLQRLKPF-----GCNLL--YHDRLQM----APELEKETGAKFV--E--------DLNEMLPKCD 222 (351)
T ss_dssp TCEEEEECCSHHHHHHHHHHGGG-----CCEEE--EECSSCC----CHHHHHHHCCEEC--S--------CHHHHGGGCS
T ss_pred CCEEeEEEeCHHHHHHHHHHHHC-----CCEEE--EeCCCcc----CHHHHHhCCCeEc--C--------CHHHHHhcCC
Confidence 47999999886 55555555543 35543 3343211 1345566676321 1 2445667899
Q ss_pred EEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCCCCCCCCC----hHHHHHHHh
Q 024060 125 FLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG----KPAKQAFDA 200 (273)
Q Consensus 125 lvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~----~p~~~ai~~ 200 (273)
+|+++- |+. -.-+.++..+.++..+.+.+=+.-| ||. ..+..|+.+
T Consensus 223 vV~l~~-----Plt--------------------~~t~~li~~~~l~~mk~gailIN~a-----RG~~vde~aL~~aL~~ 272 (351)
T 3jtm_A 223 VIVINM-----PLT--------------------EKTRGMFNKELIGKLKKGVLIVNNA-----RGAIMERQAVVDAVES 272 (351)
T ss_dssp EEEECS-----CCC--------------------TTTTTCBSHHHHHHSCTTEEEEECS-----CGGGBCHHHHHHHHHH
T ss_pred EEEECC-----CCC--------------------HHHHHhhcHHHHhcCCCCCEEEECc-----CchhhCHHHHHHHHHh
Confidence 998753 211 1123478889999888776555554 553 467788888
Q ss_pred CCCEeEEE--EEEecCccCCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Q 024060 201 GVKLIGAT--SHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRV 262 (273)
Q Consensus 201 G~~~~GvT--~H~~~~~~D~G~Ii~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~i~~l~~g~~ 262 (273)
|. ..|+- ++.-++--..-|......+-+.|+-...+...+ ....+...+.+..+.+|+.
T Consensus 273 g~-i~ga~lDV~~~EP~~~~~pL~~~~nvilTPHia~~t~ea~--~~~~~~~~~nl~~~~~g~~ 333 (351)
T 3jtm_A 273 GH-IGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTTIDAQ--LRYAAGTKDMLERYFKGED 333 (351)
T ss_dssp TS-EEEEEESCCSSSSCCTTCGGGTSTTBCCCCSCGGGSHHHH--HHHHHHHHHHHHHHHHTCC
T ss_pred CC-ccEEEeCCCCCCCCCCCChhhcCCCEEECCcCCCCCHHHH--HHHHHHHHHHHHHHHcCCC
Confidence 85 44443 433333222234444445666676544333322 1223345566777778873
No 104
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=53.67 E-value=31 Score=25.55 Aligned_cols=71 Identities=10% Similarity=0.054 Sum_probs=34.6
Q ss_pred CceEEEEEECC-chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHH-hcCC
Q 024060 46 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLEL-VQNT 123 (273)
Q Consensus 46 ~~kiav~~Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~-l~~~ 123 (273)
.+||+|+|.|. |..+...+.. .| +++++ +... ......+.++.|+.+...+. ...+.+.+. +.++
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~--~g---~~v~~-~d~~----~~~~~~~~~~~~~~~~~~d~---~~~~~l~~~~~~~~ 70 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSE--KG---HDIVL-IDID----KDICKKASAEIDALVINGDC---TKIKTLEDAGIEDA 70 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHH--TT---CEEEE-EESC----HHHHHHHHHHCSSEEEESCT---TSHHHHHHTTTTTC
T ss_pred CCEEEEECCCHHHHHHHHHHHh--CC---CeEEE-EECC----HHHHHHHHHhcCcEEEEcCC---CCHHHHHHcCcccC
Confidence 37899998754 3333332221 23 56653 3322 12234444556876554321 112233322 3489
Q ss_pred CEEEEE
Q 024060 124 DFLVLA 129 (273)
Q Consensus 124 Dlvv~a 129 (273)
|+++++
T Consensus 71 d~vi~~ 76 (140)
T 1lss_A 71 DMYIAV 76 (140)
T ss_dssp SEEEEC
T ss_pred CEEEEe
Confidence 998876
No 105
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*
Probab=52.67 E-value=34 Score=30.55 Aligned_cols=123 Identities=17% Similarity=0.075 Sum_probs=58.9
Q ss_pred CceEEEEEECC-chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHH-HhcCC
Q 024060 46 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLE-LVQNT 123 (273)
Q Consensus 46 ~~kiav~~Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~-~l~~~ 123 (273)
.+||+|+|.|. |..+...+.. .|. ..+|. +.+++ ..-.+.+.+.|+-...... +.+ .++++
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~--~G~-~~~V~--~~dr~----~~~~~~a~~~G~~~~~~~~--------~~~~~~~~a 95 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRR--SGF-KGKIY--GYDIN----PESISKAVDLGIIDEGTTS--------IAKVEDFSP 95 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHH--TTC-CSEEE--EECSC----HHHHHHHHHTTSCSEEESC--------TTGGGGGCC
T ss_pred CCEEEEEeeCHHHHHHHHHHHh--CCC-CCEEE--EEECC----HHHHHHHHHCCCcchhcCC--------HHHHhhccC
Confidence 47999999876 4444333322 231 12543 34542 2345667788874322221 112 35689
Q ss_pred CEEEEEeecCCcchhhHhhhhhhhhhhhcccCccccccccc--CChhHHhhcCCCeeEeecCCCCCCCC
Q 024060 124 DFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMI--LSGKFLRSYGKDVINIHHGLLPSFKG 190 (273)
Q Consensus 124 Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~i--l~~~~l~~~~~~~iNiHpslLP~yRG 190 (273)
|+||++- |++...-+=-++.+.+.++..+...-+.. +-..+.+..+..++..||-.-|...|
T Consensus 96 DvVilav-----p~~~~~~vl~~l~~~l~~~~iv~d~~Svk~~~~~~~~~~l~~~~v~~hPm~G~e~sG 159 (314)
T 3ggo_A 96 DFVMLSS-----PVRTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGGHPIAGTEKSG 159 (314)
T ss_dssp SEEEECS-----CGGGHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGEECEEECCCCCCCS
T ss_pred CEEEEeC-----CHHHHHHHHHHHhhccCCCcEEEECCCCcHHHHHHHHHhcCCCEEecCcccCCcccc
Confidence 9999874 33211111012223345555554433321 11122222223677788876555444
No 106
>2wmy_A WZB, putative acid phosphatase WZB; hydrolase; 2.21A {Escherichia coli}
Probab=52.41 E-value=31 Score=27.53 Aligned_cols=80 Identities=15% Similarity=0.153 Sum_probs=45.1
Q ss_pred CceEEEEEECCc--hhH-HHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcC
Q 024060 46 KYKVAVLASKQE--HCL-VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQN 122 (273)
Q Consensus 46 ~~kiav~~Sg~g--~~l-~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~ 122 (273)
++||.|+.+|+. |.+ ++++..... .+.+.=.++-.....+.+....+.++++||++.....+ ...++ .+.+
T Consensus 8 m~~VLFVC~gN~cRSpmAEal~r~~~~-~~~v~SAGt~~~~g~~~~p~a~~~l~e~Gid~~~~~ar-~l~~~----~~~~ 81 (150)
T 2wmy_A 8 FDSILVICTGNICRSPIGERLLRRLLP-SKKINSAGVGALVDHTADESAIRVAEKNGLCLKGHRGT-KFTSA----LARQ 81 (150)
T ss_dssp CCEEEEEESSSSSHHHHHHHHHHHHCT-TSEEEEEETTCCTTCCCCHHHHHHHHHTTCCCTTCCCC-BCCHH----HHTT
T ss_pred cCEEEEEcCCchHHHHHHHHHHHHhcC-CCEEEeccccCCCCCCCCHHHHHHHHHcCCCccCCccc-CCCHH----Hhcc
Confidence 358999988874 444 556665432 22222222222222334667889999999997421111 12222 2347
Q ss_pred CCEEEEEee
Q 024060 123 TDFLVLARY 131 (273)
Q Consensus 123 ~Dlvv~ag~ 131 (273)
+|+|+...-
T Consensus 82 ~DlIi~m~~ 90 (150)
T 2wmy_A 82 YDLLLVMEY 90 (150)
T ss_dssp CSEEEESCH
T ss_pred CCEEEEcCH
Confidence 999997653
No 107
>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A
Probab=52.38 E-value=45 Score=31.22 Aligned_cols=161 Identities=12% Similarity=0.185 Sum_probs=87.8
Q ss_pred CceEEEEEECC-chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCCC
Q 024060 46 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 124 (273)
Q Consensus 46 ~~kiav~~Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~D 124 (273)
.++|+|+|.|. |..+...+.++ ..+|. +.++... . .+.+.+.|+... . ++.++++++|
T Consensus 191 gktvGIIGlG~IG~~vA~~l~a~-----G~~V~--~~d~~~~--~--~~~~~~~G~~~~--~--------~l~ell~~aD 249 (393)
T 2nac_A 191 AMHVGTVAAGRIGLAVLRRLAPF-----DVHLH--YTDRHRL--P--ESVEKELNLTWH--A--------TREDMYPVCD 249 (393)
T ss_dssp TCEEEEECCSHHHHHHHHHHGGG-----TCEEE--EECSSCC--C--HHHHHHHTCEEC--S--------SHHHHGGGCS
T ss_pred CCEEEEEeECHHHHHHHHHHHhC-----CCEEE--EEcCCcc--c--hhhHhhcCceec--C--------CHHHHHhcCC
Confidence 47899999886 55555445442 25553 3343211 1 345666776432 1 1334666899
Q ss_pred EEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCCCCCCCCC----hHHHHHHHh
Q 024060 125 FLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG----KPAKQAFDA 200 (273)
Q Consensus 125 lvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~----~p~~~ai~~ 200 (273)
+|+++- |+. -.-+.++..+.++..+.+.+=+.-| ||. ..+..|+.+
T Consensus 250 vV~l~~-----Plt--------------------~~t~~li~~~~l~~mk~gailIN~a-----RG~~vde~aL~~aL~~ 299 (393)
T 2nac_A 250 VVTLNC-----PLH--------------------PETEHMINDETLKLFKRGAYIVNTA-----RGKLCDRDAVARALES 299 (393)
T ss_dssp EEEECS-----CCC--------------------TTTTTCBSHHHHTTSCTTEEEEECS-----CGGGBCHHHHHHHHHT
T ss_pred EEEEec-----CCc--------------------hHHHHHhhHHHHhhCCCCCEEEECC-----CchHhhHHHHHHHHHc
Confidence 998763 211 0112377788888887776555555 663 357788888
Q ss_pred CCCEeEEEEEEecCc--cCCCCeeEEEEEecCCCCCHHHH--HHHHHHHHHHHHHHHHHHHHhCCc
Q 024060 201 GVKLIGATSHFVTEE--LDAGPIIEQMVERVSHRDNLRTF--VQKSEDVEKQCLAKAIKSYCELRV 262 (273)
Q Consensus 201 G~~~~GvT~H~~~~~--~D~G~Ii~Q~~~~I~~~dt~~~L--~~rl~~~~~~ll~~~i~~l~~g~~ 262 (273)
|. ..|+-+-....+ ...-+.+....+-+.|+....+. .+++ .+.+.+.+..+.+|+.
T Consensus 300 g~-i~gA~lDV~~~EP~~~~~pL~~~~nvilTPHia~~T~e~~~~~----~~~~~~nl~~~~~G~~ 360 (393)
T 2nac_A 300 GR-LAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTTLTAQARY----AAGTREILECFFEGRP 360 (393)
T ss_dssp TS-EEEEEESCCSSSSCCTTCGGGTSTTBCCCCSCTTCSHHHHHHH----HHHHHHHHHHHHHTCC
T ss_pred CC-eeEEEEEecCCCCCCCCChhHcCCCEEECCCCCcCcHHHHHHH----HHHHHHHHHHHHcCCC
Confidence 74 555555444433 12223443344556665433332 2233 3344456666667753
No 108
>1u2p_A Ptpase, low molecular weight protein-tyrosine- phosphatase; hydrolase; 1.90A {Mycobacterium tuberculosis} PDB: 1u2q_A
Probab=52.28 E-value=37 Score=27.41 Aligned_cols=81 Identities=16% Similarity=0.144 Sum_probs=44.5
Q ss_pred CCceEEEEEECCc--hhH-HHHHHhhh-cCCCC--ceEEEEeeCC---CCCCCcHHHHHHHHcCCCEEEEcCCCCchHHH
Q 024060 45 PKYKVAVLASKQE--HCL-VDFLYGWQ-EGKLP--VEITCVISNH---DRGPNSHVIRFLERHGIPYHYLCAKENEREEE 115 (273)
Q Consensus 45 ~~~kiav~~Sg~g--~~l-~~ll~~~~-~~~l~--~~i~~Vvs~~---~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~ 115 (273)
+++||.|+.+|+. |.+ ++++.... +..+. .+|.--=|.. ..+.+....+.++++||++. ...+ ....+
T Consensus 3 ~~~~VLFVC~gN~cRSpmAEal~~~~~~~~gl~~~~~v~SAGt~~~~~G~~~~p~a~~~l~~~Gid~s-~~ar-~l~~~- 79 (163)
T 1u2p_A 3 DPLHVTFVCTGNICRSPMAEKMFAQQLRHRGLGDAVRVTSAGTGNWHVGSCADERAAGVLRAHGYPTD-HRAA-QVGTE- 79 (163)
T ss_dssp -CEEEEEEESSSSSHHHHHHHHHHHHHHHTTCTTTEEEEEEESSCTTTTCCCCHHHHHHHHHTTCCCC-CCCC-BCCHH-
T ss_pred CCCEEEEEcCCcHhHHHHHHHHHHHHHHHCCCCCcEEEEecccCCCcCCCCCCHHHHHHHHHcCcCCC-ceee-ECChh-
Confidence 4589999999874 443 44555431 11122 3333222221 22346678899999999986 3221 12221
Q ss_pred HHHHhcCCCEEEEEeec
Q 024060 116 LLELVQNTDFLVLARYM 132 (273)
Q Consensus 116 ~~~~l~~~Dlvv~ag~~ 132 (273)
.+.+ |+|+...-.
T Consensus 80 ---~~~~-DlIi~Md~~ 92 (163)
T 1u2p_A 80 ---HLAA-DLLVALDRN 92 (163)
T ss_dssp ---HHTS-SEEEESSHH
T ss_pred ---hccC-CEEEEeCHH
Confidence 2348 999976533
No 109
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=52.13 E-value=24 Score=32.77 Aligned_cols=58 Identities=14% Similarity=0.030 Sum_probs=37.9
Q ss_pred CCceEEEEEECCc-h-hHHHHHHhhhcCCCCceEEEEeeCCCCCC-----------CcHHHHHHHHcCCCEEEEcC
Q 024060 45 PKYKVAVLASKQE-H-CLVDFLYGWQEGKLPVEITCVISNHDRGP-----------NSHVIRFLERHGIPYHYLCA 107 (273)
Q Consensus 45 ~~~kiav~~Sg~g-~-~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~-----------~~~~~~~a~~~gIp~~~~~~ 107 (273)
+..||+|..||+- | .+..++.. . ..++.+|..+.-... ...+.++|++.|||++.++-
T Consensus 16 ~~~kVvVa~SGGvDSsv~a~lL~~--~---G~~V~~v~~~~~~~~~~~~~~~s~~d~~~a~~va~~LGIp~~vvd~ 86 (380)
T 2der_A 16 TAKKVIVGMSGGVDSSVSAWLLQQ--Q---GYQVEGLFMKNWEEDDGEEYCTAAADLADAQAVCDKLGIELHTVNF 86 (380)
T ss_dssp -CCEEEEECCSCSTTHHHHHHHHT--T---CCEEEEEEEECCCCCSHHHHHHHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred CCCEEEEEEEChHHHHHHHHHHHH--c---CCeEEEEEEEcCccccccCCCCCHHHHHHHHHHHHHcCCcEEEEeC
Confidence 4579999999963 3 33444442 2 378888877542111 13467889999999998873
No 110
>1p8a_A Protein tyrosine phosphatase; hydrolase; NMR {Tritrichomonas foetus} SCOP: c.44.1.1
Probab=51.28 E-value=27 Score=27.66 Aligned_cols=81 Identities=11% Similarity=0.078 Sum_probs=47.6
Q ss_pred CceEEEEEECCc--hh-HHHHHHhhhcCCCCceEEEEeeCC-CCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhc
Q 024060 46 KYKVAVLASKQE--HC-LVDFLYGWQEGKLPVEITCVISNH-DRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ 121 (273)
Q Consensus 46 ~~kiav~~Sg~g--~~-l~~ll~~~~~~~l~~~i~~Vvs~~-~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~ 121 (273)
++||.|+.+|+. |. .++++.....+.+.+.=.++-..+ ..+.+....+.++++||++.....+ ...++ .+.
T Consensus 4 ~~~VLFVC~gN~cRSpmAEal~~~~~~~~~~v~SAGt~~~~~g~~~~p~a~~~l~e~Gid~s~~~sr-~l~~~----~~~ 78 (146)
T 1p8a_A 4 KKAVLFVCLGNICRSPACEGICRDMVGDKLIIDSAATSGFHVGQSPDTRSQKVCKSNGVDISKQRAR-QITKA----DFS 78 (146)
T ss_dssp CCCEEEESSSSCSSSTTHHHHHHHHHSSCSSCEEECSCTTSCSCSCTHHHHHHHHHHSCCCCCCCCC-CCCSH----HHH
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHHhcCCCEEEEeeecCCcccCCCCCHHHHHHHHHcCCChhcCeec-cCCHh----Hhh
Confidence 468988888874 43 466777655444444433433312 2334667889999999997532111 12222 233
Q ss_pred CCCEEEEEee
Q 024060 122 NTDFLVLARY 131 (273)
Q Consensus 122 ~~Dlvv~ag~ 131 (273)
++|+|+...-
T Consensus 79 ~~DlIi~m~~ 88 (146)
T 1p8a_A 79 KFDVIAALDQ 88 (146)
T ss_dssp SCSEEEESSH
T ss_pred cCCEEEEeCh
Confidence 7899997653
No 111
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=50.89 E-value=64 Score=22.93 Aligned_cols=72 Identities=17% Similarity=0.275 Sum_probs=37.7
Q ss_pred CCceEEEEEECC-chhH-HHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcC
Q 024060 45 PKYKVAVLASKQ-EHCL-VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQN 122 (273)
Q Consensus 45 ~~~kiav~~Sg~-g~~l-~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~ 122 (273)
+++||+|+|.|. |..+ +.|.+ .| .++|.+ ++++ ..-.+.+...|+.....+- ...+++.+.+++
T Consensus 4 ~~~~v~I~G~G~iG~~~~~~l~~---~g--~~~v~~--~~r~----~~~~~~~~~~~~~~~~~d~---~~~~~~~~~~~~ 69 (118)
T 3ic5_A 4 MRWNICVVGAGKIGQMIAALLKT---SS--NYSVTV--ADHD----LAALAVLNRMGVATKQVDA---KDEAGLAKALGG 69 (118)
T ss_dssp TCEEEEEECCSHHHHHHHHHHHH---CS--SEEEEE--EESC----HHHHHHHHTTTCEEEECCT---TCHHHHHHHTTT
T ss_pred CcCeEEEECCCHHHHHHHHHHHh---CC--CceEEE--EeCC----HHHHHHHHhCCCcEEEecC---CCHHHHHHHHcC
Confidence 457888888743 3333 22322 23 255543 3331 1122333466777665442 223556666778
Q ss_pred CCEEEEEe
Q 024060 123 TDFLVLAR 130 (273)
Q Consensus 123 ~Dlvv~ag 130 (273)
+|++|.+.
T Consensus 70 ~d~vi~~~ 77 (118)
T 3ic5_A 70 FDAVISAA 77 (118)
T ss_dssp CSEEEECS
T ss_pred CCEEEECC
Confidence 99998664
No 112
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=49.92 E-value=67 Score=27.35 Aligned_cols=116 Identities=13% Similarity=0.074 Sum_probs=62.8
Q ss_pred CCCceEEEEEECCchhHHHHHHh---hhcCCCCceEEEEeeCCCCCCC---cHHHHHHHHcCCCEEEEcCCCCchHHHHH
Q 024060 44 DPKYKVAVLASKQEHCLVDFLYG---WQEGKLPVEITCVISNHDRGPN---SHVIRFLERHGIPYHYLCAKENEREEELL 117 (273)
Q Consensus 44 ~~~~kiav~~Sg~g~~l~~ll~~---~~~~~l~~~i~~Vvs~~~~~~~---~~~~~~a~~~gIp~~~~~~~~~~~~~~~~ 117 (273)
.+..||.|...++..+.+++-.+ .+. .++++..+-...+.... ..+.+.++++|+++...-.. ....+++.
T Consensus 168 ~~~~~Ilv~~d~s~~s~~al~~a~~la~~--~~~~l~ll~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~-g~~~~~I~ 244 (294)
T 3loq_A 168 SLFDRVLVAYDFSKWADRALEYAKFVVKK--TGGELHIIHVSEDGDKTADLRVMEEVIGAEGIEVHVHIES-GTPHKAIL 244 (294)
T ss_dssp CTTSEEEEECCSSHHHHHHHHHHHHHHHH--HTCEEEEEEECSSSCCHHHHHHHHHHHHHTTCCEEEEEEC-SCHHHHHH
T ss_pred ccCCEEEEEECCCHHHHHHHHHHHHHhhh--cCCEEEEEEEccCchHHHHHHHHHHHHHHcCCcEEEEEec-CCHHHHHH
Confidence 34578888776665443333222 111 13555555433321111 23556777899996543222 23456777
Q ss_pred HHhc--CCCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecC
Q 024060 118 ELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHG 183 (273)
Q Consensus 118 ~~l~--~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHps 183 (273)
+..+ ++|++|+..+++- .+.-.+-+-....++...+..++-+|+.
T Consensus 245 ~~a~~~~~dLlV~G~~~~~---------------------~~~~~~~Gs~~~~vl~~~~~pvLvv~~~ 291 (294)
T 3loq_A 245 AKREEINATTIFMGSRGAG---------------------SVMTMILGSTSESVIRRSPVPVFVCKRG 291 (294)
T ss_dssp HHHHHTTCSEEEEECCCCS---------------------CHHHHHHHCHHHHHHHHCSSCEEEECSC
T ss_pred HHHHhcCcCEEEEeCCCCC---------------------CccceeeCcHHHHHHhcCCCCEEEECCC
Confidence 7775 8999999888761 0010111134566677667677777764
No 113
>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}
Probab=49.85 E-value=18 Score=31.65 Aligned_cols=67 Identities=19% Similarity=0.235 Sum_probs=37.3
Q ss_pred CceEEEEEECC-chhHHH-HHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCC
Q 024060 46 KYKVAVLASKQ-EHCLVD-FLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 123 (273)
Q Consensus 46 ~~kiav~~Sg~-g~~l~~-ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~ 123 (273)
++||+|+|.|+ |+.+.. |.+ .|....+|. +++++ .....++++++|+.+. .+ ..+.++++
T Consensus 3 ~~~I~iIG~G~mG~aia~~l~~---~g~~~~~V~--v~dr~---~~~~~~l~~~~gi~~~--~~--------~~~~~~~a 64 (280)
T 3tri_A 3 TSNITFIGGGNMARNIVVGLIA---NGYDPNRIC--VTNRS---LDKLDFFKEKCGVHTT--QD--------NRQGALNA 64 (280)
T ss_dssp CSCEEEESCSHHHHHHHHHHHH---TTCCGGGEE--EECSS---SHHHHHHHHTTCCEEE--SC--------HHHHHSSC
T ss_pred CCEEEEEcccHHHHHHHHHHHH---CCCCCCeEE--EEeCC---HHHHHHHHHHcCCEEe--CC--------hHHHHhcC
Confidence 47899999886 444333 333 231112443 44552 2345556666787543 11 22345689
Q ss_pred CEEEEEe
Q 024060 124 DFLVLAR 130 (273)
Q Consensus 124 Dlvv~ag 130 (273)
|+||++-
T Consensus 65 DvVilav 71 (280)
T 3tri_A 65 DVVVLAV 71 (280)
T ss_dssp SEEEECS
T ss_pred CeEEEEe
Confidence 9999875
No 114
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=49.81 E-value=15 Score=28.16 Aligned_cols=64 Identities=17% Similarity=-0.012 Sum_probs=35.1
Q ss_pred CCCCceEEEEEECCch-hH--HHHHHhhhcCCCCceEEEE-eeCCCCC---C------------CcHHHHHHHHcCCCEE
Q 024060 43 IDPKYKVAVLASKQEH-CL--VDFLYGWQEGKLPVEITCV-ISNHDRG---P------------NSHVIRFLERHGIPYH 103 (273)
Q Consensus 43 ~~~~~kiav~~Sg~g~-~l--~~ll~~~~~~~l~~~i~~V-vs~~~~~---~------------~~~~~~~a~~~gIp~~ 103 (273)
..+++||.++.+++.| .+ +.+-++.++..++.+|.++ ++.-++. . -..+.+.|.++|||+.
T Consensus 3 ~~~~mkIlL~C~aGmSTsllv~km~~~a~~~gi~v~i~a~~~~~~~~~~~~~DvvLLgPQV~y~~~~ik~~~~~~~ipV~ 82 (108)
T 3nbm_A 3 ASKELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGAHYDIMGVYDLIILAPQVRSYYREMKVDAERLGIQIV 82 (108)
T ss_dssp --CCEEEEEEESSSSHHHHHHHHHHHHHHHHTCSEEEEEEETTSCTTTGGGCSEEEECGGGGGGHHHHHHHHTTTTCEEE
T ss_pred cccCceEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEcchHHHHhhccCCCEEEEChHHHHHHHHHHHHhhhcCCcEE
Confidence 3456888887776653 32 3344444444567777663 1111111 0 1235666777899998
Q ss_pred EEc
Q 024060 104 YLC 106 (273)
Q Consensus 104 ~~~ 106 (273)
.++
T Consensus 83 vI~ 85 (108)
T 3nbm_A 83 ATR 85 (108)
T ss_dssp ECC
T ss_pred EeC
Confidence 876
No 115
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=49.67 E-value=11 Score=27.25 Aligned_cols=27 Identities=22% Similarity=0.293 Sum_probs=19.6
Q ss_pred cHHHHHHHHcCCCEEEEcCCCCchHHHHHHHh
Q 024060 89 SHVIRFLERHGIPYHYLCAKENEREEELLELV 120 (273)
Q Consensus 89 ~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l 120 (273)
..+..+|+++|||++.++.+ .++=++.
T Consensus 43 ~~i~~lc~~~~Ip~~~v~sk-----~eLG~a~ 69 (82)
T 3v7e_A 43 SSVVSLAEDQGISVSMVESM-----KKLGKAC 69 (82)
T ss_dssp HHHHHHHHHHTCCEEEESCH-----HHHHHHH
T ss_pred HHHHHHHHHcCCCEEEECCH-----HHHHHHh
Confidence 45778899999999988732 3455554
No 116
>2fek_A Low molecular weight protein-tyrosine- phosphatase WZB; phosphate binding, hydrolase; NMR {Escherichia coli K12}
Probab=49.57 E-value=35 Score=27.98 Aligned_cols=80 Identities=15% Similarity=0.185 Sum_probs=45.0
Q ss_pred CceEEEEEECCc--hhH-HHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcC
Q 024060 46 KYKVAVLASKQE--HCL-VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQN 122 (273)
Q Consensus 46 ~~kiav~~Sg~g--~~l-~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~ 122 (273)
++||.|+.+|+. |.+ ++++..... .+.+.=.++-.....+.+....+.++++||++.....+ ...++. +.+
T Consensus 22 m~~VLFVCtgN~cRSpmAEal~r~~~~-~~~v~SAGt~~~~g~~~~p~a~~vl~e~Gid~s~~~sr-~l~~~~----~~~ 95 (167)
T 2fek_A 22 FNNILVVCVGNICRSPTAERLLQRYHP-ELKVESAGLGALVGKGADPTAISVAAEHQLSLEGHCAR-QISRRL----CRN 95 (167)
T ss_dssp CCEEEEEESSSSSHHHHHHHHHHHHCT-TCEEEEEETTCCTTCCCCHHHHHHHHHTTCCCTTCCCC-BCCHHH----HHH
T ss_pred cCeEEEEcCCcHHHHHHHHHHHHHhcC-CeEEEeeecCCCCCCCCCHHHHHHHHHcCCCccCCcCc-cCCHHH----hcc
Confidence 468999998874 444 556665432 22222223222222334667889999999997421111 122221 236
Q ss_pred CCEEEEEee
Q 024060 123 TDFLVLARY 131 (273)
Q Consensus 123 ~Dlvv~ag~ 131 (273)
+|+|+...-
T Consensus 96 ~DlIitM~~ 104 (167)
T 2fek_A 96 YDLILTMEK 104 (167)
T ss_dssp SSEEEESCH
T ss_pred CCEEEEcCH
Confidence 899997653
No 117
>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}
Probab=49.07 E-value=28 Score=26.75 Aligned_cols=68 Identities=16% Similarity=0.228 Sum_probs=38.7
Q ss_pred CceEEEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCCCE
Q 024060 46 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDF 125 (273)
Q Consensus 46 ~~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~Dl 125 (273)
.+||+|+|+|. --..+...+.. ..++ +.|+ +++ .....++++++|+.+.... ++.+.+.++|+
T Consensus 21 ~~~v~iiG~G~--iG~~~a~~l~~--~g~~-v~v~-~r~---~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~Di 83 (144)
T 3oj0_A 21 GNKILLVGNGM--LASEIAPYFSY--PQYK-VTVA-GRN---IDHVRAFAEKYEYEYVLIN--------DIDSLIKNNDV 83 (144)
T ss_dssp CCEEEEECCSH--HHHHHGGGCCT--TTCE-EEEE-ESC---HHHHHHHHHHHTCEEEECS--------CHHHHHHTCSE
T ss_pred CCEEEEECCCH--HHHHHHHHHHh--CCCE-EEEE-cCC---HHHHHHHHHHhCCceEeec--------CHHHHhcCCCE
Confidence 47999999764 22233333332 1356 4344 442 2345677888887654322 13344568999
Q ss_pred EEEEe
Q 024060 126 LVLAR 130 (273)
Q Consensus 126 vv~ag 130 (273)
|+.+-
T Consensus 84 vi~at 88 (144)
T 3oj0_A 84 IITAT 88 (144)
T ss_dssp EEECS
T ss_pred EEEeC
Confidence 98764
No 118
>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A
Probab=48.76 E-value=14 Score=31.31 Aligned_cols=66 Identities=17% Similarity=0.320 Sum_probs=35.1
Q ss_pred CCceEEEEEECC-chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCC
Q 024060 45 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 123 (273)
Q Consensus 45 ~~~kiav~~Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~ 123 (273)
.++||+|+|.|. |..+...+.. .| ++| .+.+++ .....++++++|+.+. . . ..+.++++
T Consensus 2 ~~m~i~iiG~G~mG~~~a~~l~~--~g---~~v--~~~~~~---~~~~~~~~~~~g~~~~--~----~----~~~~~~~~ 61 (259)
T 2ahr_A 2 NAMKIGIIGVGKMASAIIKGLKQ--TP---HEL--IISGSS---LERSKEIAEQLALPYA--M----S----HQDLIDQV 61 (259)
T ss_dssp -CCEEEEECCSHHHHHHHHHHTT--SS---CEE--EEECSS---HHHHHHHHHHHTCCBC--S----S----HHHHHHTC
T ss_pred CccEEEEECCCHHHHHHHHHHHh--CC---CeE--EEECCC---HHHHHHHHHHcCCEee--C----C----HHHHHhcC
Confidence 357999999875 4443322221 23 344 334442 2334556666787642 1 1 12334589
Q ss_pred CEEEEEe
Q 024060 124 DFLVLAR 130 (273)
Q Consensus 124 Dlvv~ag 130 (273)
|+|+++-
T Consensus 62 D~Vi~~v 68 (259)
T 2ahr_A 62 DLVILGI 68 (259)
T ss_dssp SEEEECS
T ss_pred CEEEEEe
Confidence 9999875
No 119
>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}
Probab=48.23 E-value=12 Score=33.92 Aligned_cols=46 Identities=13% Similarity=0.019 Sum_probs=25.7
Q ss_pred CceEEEEEECC-ch-h-HHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCC
Q 024060 46 KYKVAVLASKQ-EH-C-LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGI 100 (273)
Q Consensus 46 ~~kiav~~Sg~-g~-~-l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gI 100 (273)
++||+|+|.|. +. . +.++.+. + .+++++|+.... ....++|++++.
T Consensus 5 ~~rigiIG~G~~g~~~~~~~l~~~---~--~~~l~av~d~~~----~~~~~~a~~~~~ 53 (359)
T 3m2t_A 5 LIKVGLVGIGAQMQENLLPSLLQM---Q--DIRIVAACDSDL----ERARRVHRFISD 53 (359)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTC---T--TEEEEEEECSSH----HHHGGGGGTSCS
T ss_pred cceEEEECCCHHHHHHHHHHHHhC---C--CcEEEEEEcCCH----HHHHHHHHhcCC
Confidence 58999999986 33 2 3333221 2 478887775431 223445555543
No 120
>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}
Probab=48.17 E-value=10 Score=33.85 Aligned_cols=33 Identities=18% Similarity=0.266 Sum_probs=19.5
Q ss_pred CceEEEEEECC-chhHHHHHHhhhcCCCCceEEEEeeC
Q 024060 46 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISN 82 (273)
Q Consensus 46 ~~kiav~~Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~ 82 (273)
++||+|+|.|. |..+ +.++++. ...++++|+..
T Consensus 9 ~irv~IIG~G~iG~~~---~~~l~~~-~~~elvav~d~ 42 (304)
T 3bio_A 9 KIRAAIVGYGNIGRYA---LQALREA-PDFEIAGIVRR 42 (304)
T ss_dssp CEEEEEECCSHHHHHH---HHHHHHC-TTEEEEEEECC
T ss_pred CCEEEEECChHHHHHH---HHHHhcC-CCCEEEEEEcC
Confidence 58999999875 3322 3332221 14788887643
No 121
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=48.00 E-value=27 Score=32.32 Aligned_cols=57 Identities=18% Similarity=0.186 Sum_probs=37.6
Q ss_pred CCceEEEEEECCc-h-hHHHHHHhhhcCCCCceEEEEeeCCCCCC-----------CcHHHHHHHHcCCCEEEEc
Q 024060 45 PKYKVAVLASKQE-H-CLVDFLYGWQEGKLPVEITCVISNHDRGP-----------NSHVIRFLERHGIPYHYLC 106 (273)
Q Consensus 45 ~~~kiav~~Sg~g-~-~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~-----------~~~~~~~a~~~gIp~~~~~ 106 (273)
+..||+|..||+- | .+..++.. . ..++.+|..+..... ...+.++|++.|||++.++
T Consensus 8 ~~~kVlVa~SGGvDSsv~a~lL~~--~---G~~V~~v~~~~~~~~~~~~~c~~~~d~~~a~~va~~lGIp~~vv~ 77 (376)
T 2hma_A 8 SKTRVVVGMSGGVDSSVTALLLKE--Q---GYDVIGIFMKNWDDTDENGVCTATEDYKDVVAVADQIGIPYYSVN 77 (376)
T ss_dssp GGSEEEEECCSSHHHHHHHHHHHH--T---TCEEEEEEEECCCCCC----CHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCeEEEEEeCHHHHHHHHHHHHH--c---CCcEEEEEEECCCcccccccCCCHHHHHHHHHHHHHhCCcEEEEe
Confidence 4579999999964 3 33334432 2 378888876542111 1236788999999999887
No 122
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=47.48 E-value=89 Score=23.60 Aligned_cols=80 Identities=15% Similarity=0.238 Sum_probs=46.2
Q ss_pred ceEEEEEECC-chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCCCE
Q 024060 47 YKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDF 125 (273)
Q Consensus 47 ~kiav~~Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~Dl 125 (273)
.+|+++|.-. .-++..+++++..=.-..++..++.... +....+.+.++++|+.+.. .. ...+++.+.+..+|+
T Consensus 3 ~~i~~~G~~~~~Kg~~~li~a~~~l~~~~~~~l~i~G~g-~~~~~~~~~~~~~~~~v~~-g~---~~~~~~~~~~~~adv 77 (166)
T 3qhp_A 3 FKIAMVGRYSNEKNQSVLIKAVALSKYKQDIVLLLKGKG-PDEKKIKLLAQKLGVKAEF-GF---VNSNELLEILKTCTL 77 (166)
T ss_dssp EEEEEESCCSTTTTHHHHHHHHHTCTTGGGEEEEEECCS-TTHHHHHHHHHHHTCEEEC-CC---CCHHHHHHHHTTCSE
T ss_pred eEEEEEeccchhcCHHHHHHHHHHhccCCCeEEEEEeCC-ccHHHHHHHHHHcCCeEEE-ee---cCHHHHHHHHHhCCE
Confidence 3444444322 2356667776543111134555555432 1235678888999985554 32 235678888889999
Q ss_pred EEEEee
Q 024060 126 LVLARY 131 (273)
Q Consensus 126 vv~ag~ 131 (273)
+|+.+.
T Consensus 78 ~v~ps~ 83 (166)
T 3qhp_A 78 YVHAAN 83 (166)
T ss_dssp EEECCC
T ss_pred EEECCc
Confidence 986553
No 123
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=47.14 E-value=43 Score=25.19 Aligned_cols=41 Identities=22% Similarity=0.359 Sum_probs=25.0
Q ss_pred HHHHHHHcCCCE--EEEcCCCCchHHHHHHHhc--CCCEEEEEeecC
Q 024060 91 VIRFLERHGIPY--HYLCAKENEREEELLELVQ--NTDFLVLARYMQ 133 (273)
Q Consensus 91 ~~~~a~~~gIp~--~~~~~~~~~~~~~~~~~l~--~~Dlvv~ag~~~ 133 (273)
+.++++++|++. ..+. .....+++.+..+ ++|++|+...++
T Consensus 76 l~~~~~~~~~~~~~~~~~--~g~~~~~I~~~a~~~~~dliV~G~~~~ 120 (150)
T 3tnj_A 76 LSQIGNTLGIDPAHRWLV--WGEPREEIIRIAEQENVDLIVVGSHGR 120 (150)
T ss_dssp HHHHHHHHTCCGGGEEEE--ESCHHHHHHHHHHHTTCSEEEEEEC--
T ss_pred HHHHHHHcCCCcceEEEe--cCCHHHHHHHHHHHcCCCEEEEecCCC
Confidence 455677788883 2221 1233567777776 899999876554
No 124
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=46.71 E-value=12 Score=29.34 Aligned_cols=75 Identities=11% Similarity=0.051 Sum_probs=36.2
Q ss_pred CCCCCceEEEEEECC-chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHH-HcCCCEEEEcCCCCchHHHHHHH
Q 024060 42 DIDPKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLE-RHGIPYHYLCAKENEREEELLEL 119 (273)
Q Consensus 42 ~~~~~~kiav~~Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~-~~gIp~~~~~~~~~~~~~~~~~~ 119 (273)
...+.++|+|+|.|. |..+...+.. .| ++|+++-.+.. -.+.++ +.|+.+...+ . ...+.+.+.
T Consensus 15 ~~~~~~~v~IiG~G~iG~~la~~L~~--~g---~~V~vid~~~~------~~~~~~~~~g~~~~~~d-~--~~~~~l~~~ 80 (155)
T 2g1u_A 15 KKQKSKYIVIFGCGRLGSLIANLASS--SG---HSVVVVDKNEY------AFHRLNSEFSGFTVVGD-A--AEFETLKEC 80 (155)
T ss_dssp --CCCCEEEEECCSHHHHHHHHHHHH--TT---CEEEEEESCGG------GGGGSCTTCCSEEEESC-T--TSHHHHHTT
T ss_pred cccCCCcEEEECCCHHHHHHHHHHHh--CC---CeEEEEECCHH------HHHHHHhcCCCcEEEec-C--CCHHHHHHc
Confidence 344568999998765 4444433332 23 56654332221 122233 5676654322 1 112223322
Q ss_pred -hcCCCEEEEEe
Q 024060 120 -VQNTDFLVLAR 130 (273)
Q Consensus 120 -l~~~Dlvv~ag 130 (273)
+.++|+++++-
T Consensus 81 ~~~~ad~Vi~~~ 92 (155)
T 2g1u_A 81 GMEKADMVFAFT 92 (155)
T ss_dssp TGGGCSEEEECS
T ss_pred CcccCCEEEEEe
Confidence 44789988764
No 125
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=46.67 E-value=27 Score=32.74 Aligned_cols=51 Identities=16% Similarity=0.208 Sum_probs=29.7
Q ss_pred CCceEEEEEECC-chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEc
Q 024060 45 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 106 (273)
Q Consensus 45 ~~~kiav~~Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~ 106 (273)
.+.+|.|+|.|. |..+...|.. .| +++++|=.++ ...+.+++.|+++++.+
T Consensus 3 ~~~~viIiG~Gr~G~~va~~L~~--~g---~~vvvId~d~------~~v~~~~~~g~~vi~GD 54 (413)
T 3l9w_A 3 HGMRVIIAGFGRFGQITGRLLLS--SG---VKMVVLDHDP------DHIETLRKFGMKVFYGD 54 (413)
T ss_dssp -CCSEEEECCSHHHHHHHHHHHH--TT---CCEEEEECCH------HHHHHHHHTTCCCEESC
T ss_pred CCCeEEEECCCHHHHHHHHHHHH--CC---CCEEEEECCH------HHHHHHHhCCCeEEEcC
Confidence 346789998775 4555444443 22 5565443332 34566778899988654
No 126
>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}
Probab=46.30 E-value=1e+02 Score=28.40 Aligned_cols=164 Identities=11% Similarity=0.021 Sum_probs=88.4
Q ss_pred CceEEEEEECC-chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCCC
Q 024060 46 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 124 (273)
Q Consensus 46 ~~kiav~~Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~D 124 (273)
.++|+|+|-|. |..+...+.+ +..+|. +.++.. . .+.+.+.|+.. . ++.++++++|
T Consensus 176 gktvGIIGlG~IG~~vA~~l~~-----fG~~V~--~~d~~~---~--~~~~~~~g~~~---~--------~l~ell~~aD 232 (365)
T 4hy3_A 176 GSEIGIVGFGDLGKALRRVLSG-----FRARIR--VFDPWL---P--RSMLEENGVEP---A--------SLEDVLTKSD 232 (365)
T ss_dssp SSEEEEECCSHHHHHHHHHHTT-----SCCEEE--EECSSS---C--HHHHHHTTCEE---C--------CHHHHHHSCS
T ss_pred CCEEEEecCCcccHHHHHhhhh-----CCCEEE--EECCCC---C--HHHHhhcCeee---C--------CHHHHHhcCC
Confidence 47999999886 5555544443 235654 334321 1 34556677642 1 1345566899
Q ss_pred EEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCCCCCCCCC----hHHHHHHHh
Q 024060 125 FLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG----KPAKQAFDA 200 (273)
Q Consensus 125 lvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~----~p~~~ai~~ 200 (273)
+|+++--.- -.-++++..+.++..+.+.+=+--| ||. ..+..|+.+
T Consensus 233 vV~l~~Plt-------------------------~~T~~li~~~~l~~mk~gailIN~a-----RG~~vde~aL~~aL~~ 282 (365)
T 4hy3_A 233 FIFVVAAVT-------------------------SENKRFLGAEAFSSMRRGAAFILLS-----RADVVDFDALMAAVSS 282 (365)
T ss_dssp EEEECSCSS-------------------------CC---CCCHHHHHTSCTTCEEEECS-----CGGGSCHHHHHHHHHT
T ss_pred EEEEcCcCC-------------------------HHHHhhcCHHHHhcCCCCcEEEECc-----CCchhCHHHHHHHHHc
Confidence 998763211 1123378888998887764444333 563 567888999
Q ss_pred CCCEeEEEEEEecCccCCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcee
Q 024060 201 GVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLP 264 (273)
Q Consensus 201 G~~~~GvT~H~~~~~~D~G~Ii~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~i~~l~~g~~~~ 264 (273)
|.-..|.-++.-++--..-+.+....+-+.|+-...+-.. .....++..+.+..+.+|+-..
T Consensus 283 g~i~aaLDV~~~EPl~~~~pL~~~~nvilTPHia~~t~e~--~~~~~~~~~~ni~~~~~G~~~~ 344 (365)
T 4hy3_A 283 GHIVAASDVYPEEPLPLDHPVRSLKGFIRSAHRAGALDSA--FKKMGDMVLEDMDLMDRGLPPM 344 (365)
T ss_dssp TSSEEEESCCSSSSCCTTCGGGTCTTEEECCSCSSCCHHH--HHHHHHHHHHHHHHHHTTCCCC
T ss_pred CCceEEeeCCCCCCCCCCChhhcCCCEEECCccccCHHHH--HHHHHHHHHHHHHHHHcCCCcc
Confidence 9865555554433322222444444555666543222211 1222345556666777776543
No 127
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=46.04 E-value=21 Score=33.87 Aligned_cols=61 Identities=15% Similarity=0.084 Sum_probs=40.3
Q ss_pred CCceEEEEEECCc--hhHHHHHHhhhcCCCCceEEEEeeCCCCC-C-----CcHHHHHHHHcCCCEEEEc
Q 024060 45 PKYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRG-P-----NSHVIRFLERHGIPYHYLC 106 (273)
Q Consensus 45 ~~~kiav~~Sg~g--~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~-~-----~~~~~~~a~~~gIp~~~~~ 106 (273)
+..||+|..||+. ++|-.++..+.. ..+.++.+|..++.-. . ...+.++|+++|||+++..
T Consensus 17 ~~~~vlVa~SGG~DS~~Ll~ll~~~~~-~~~~~v~avhvdhglrg~~s~~~~~~v~~~~~~lgi~~~v~~ 85 (464)
T 3a2k_A 17 EGAAVIVGVSGGPDSLALLHVFLSLRD-EWKLQVIAAHVDHMFRGRESEEEMEFVKRFCVERRILCETAQ 85 (464)
T ss_dssp CSSBEEEECCSSHHHHHHHHHHHHHHH-TTTCBCEEEEEECTTCTHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCEEEEEEcCcHHHHHHHHHHHHHHH-HcCCeEEEEEEECCCCccccHHHHHHHHHHHHHcCCcEEEEE
Confidence 4578999999964 345455544332 1246777787776432 1 1347899999999998876
No 128
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*
Probab=45.90 E-value=46 Score=31.94 Aligned_cols=59 Identities=7% Similarity=-0.032 Sum_probs=39.9
Q ss_pred CCCCceEEEEEECCc--hhHHHHHHhhhcCCCCceEEEEeeCCCCC---CCcHHHHHHHHcCC-CEEEEc
Q 024060 43 IDPKYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRG---PNSHVIRFLERHGI-PYHYLC 106 (273)
Q Consensus 43 ~~~~~kiav~~Sg~g--~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~---~~~~~~~~a~~~gI-p~~~~~ 106 (273)
..+..||++..||+- +++-.++.. . ..+|++|..+.... .-..+.+.|++.|| |+++++
T Consensus 7 l~~~~KVvVA~SGGlDSSvll~~L~e--~---G~eViavtvd~Gq~~~~ele~a~~~A~~lGi~~~~vvD 71 (455)
T 1k92_A 7 LPVGQRIGIAFSGGLDTSAALLWMRQ--K---GAVPYAYTANLGQPDEEDYDAIPRRAMEYGAENARLID 71 (455)
T ss_dssp CCTTSEEEEECCSSHHHHHHHHHHHH--T---TCEEEEEEEECCCTTCSCTTHHHHHHHHHTCSEEEEEE
T ss_pred hcCCCeEEEEEcChHHHHHHHHHHHH--c---CCEEEEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEe
Confidence 345679999999973 344444432 2 37888887765422 13568999999999 777765
No 129
>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}
Probab=45.87 E-value=41 Score=30.29 Aligned_cols=70 Identities=13% Similarity=0.106 Sum_probs=39.3
Q ss_pred CCceEEEEE-ECCc-h--hH----HHHHHhhhcCCC------C--ceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCC
Q 024060 45 PKYKVAVLA-SKQE-H--CL----VDFLYGWQEGKL------P--VEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAK 108 (273)
Q Consensus 45 ~~~kiav~~-Sg~g-~--~l----~~ll~~~~~~~l------~--~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~ 108 (273)
+++||+++| .|.. . .+ .++.+. +.+ . .++ .+++++ .....++|+++|+|..+ .+
T Consensus 5 ~~irigiiG~~G~~g~~~h~~~~~~~~~~~---~~~~l~~~~~~~~~~--av~~~~---~~~a~~~a~~~~~~~~~-~~- 74 (383)
T 3oqb_A 5 QRLGLIMNGVTGRMGLNQHLIRSIVAIRDQ---GGVRLKNGDRIMPDP--ILVGRS---AEKVEALAKRFNIARWT-TD- 74 (383)
T ss_dssp EEEEEEEESTTSTHHHHTTTTTTHHHHHHH---TSEECTTSCEEEEEE--EEECSS---SHHHHHHHHHTTCCCEE-SC-
T ss_pred ceeEEEEEeccchhhhhhhHHHHHHHHhhc---CceeecCCcccceee--EEEcCC---HHHHHHHHHHhCCCccc-CC-
Confidence 458999999 8873 3 23 444432 211 0 122 344543 24567888999998433 21
Q ss_pred CCchHHHHHHHhc--CCCEEEEEee
Q 024060 109 ENEREEELLELVQ--NTDFLVLARY 131 (273)
Q Consensus 109 ~~~~~~~~~~~l~--~~Dlvv~ag~ 131 (273)
+.++++ ++|+|+++.-
T Consensus 75 -------~~~ll~~~~iD~V~i~tp 92 (383)
T 3oqb_A 75 -------LDAALADKNDTMFFDAAT 92 (383)
T ss_dssp -------HHHHHHCSSCCEEEECSC
T ss_pred -------HHHHhcCCCCCEEEECCC
Confidence 233443 5888887753
No 130
>1d1q_A Tyrosine phosphatase (E.C.3.1.3.48); beta-alpha-beta, hydrolase; HET: 4NP; 1.70A {Saccharomyces cerevisiae} SCOP: c.44.1.1 PDB: 1d2a_A* 1d1p_A*
Probab=45.54 E-value=39 Score=27.23 Aligned_cols=81 Identities=17% Similarity=0.238 Sum_probs=44.9
Q ss_pred CCceEEEEEECCc--hhH-HHHHHhhhc-CCCC---ceEE--EEeeCC-CCCCCcHHHHHHHHcCCCEEEEcCCCCchHH
Q 024060 45 PKYKVAVLASKQE--HCL-VDFLYGWQE-GKLP---VEIT--CVISNH-DRGPNSHVIRFLERHGIPYHYLCAKENEREE 114 (273)
Q Consensus 45 ~~~kiav~~Sg~g--~~l-~~ll~~~~~-~~l~---~~i~--~Vvs~~-~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~ 114 (273)
+++||.|+.+|+. |.+ ++++..... ..+. .+|. ++-..+ ..+.+....+.++++||++. ...+ ...++
T Consensus 6 ~~~~VLFVCtgN~cRSpmAEal~~~~~~~~gl~~~~~~v~SAGt~~~~~g~~~~p~a~~~l~~~Gid~s-~~ar-~l~~~ 83 (161)
T 1d1q_A 6 PKISVAFIALGNFCRSPMAEAIFKHEVEKANLENRFNKIDSFGTSNYHVGESPDHRTVSICKQHGVKIN-HKGK-QIKTK 83 (161)
T ss_dssp CCEEEEEEESSSSSHHHHHHHHHHHHHHHTTCGGGEEEEEEEESSCTTBTCCCCHHHHHHHHHTTCCCC-CCBC-BCCGG
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHHHHHHcCCCCCeEEEEeccccCCcCCCCCCHHHHHHHHHcCcCCC-ceEe-ECCHH
Confidence 4578999999874 443 456554322 1222 2332 222211 22346678899999999986 3211 11111
Q ss_pred HHHHHhcCCCEEEEEee
Q 024060 115 ELLELVQNTDFLVLARY 131 (273)
Q Consensus 115 ~~~~~l~~~Dlvv~ag~ 131 (273)
.+.++|+|+...-
T Consensus 84 ----~~~~~DlIl~M~~ 96 (161)
T 1d1q_A 84 ----HFDEYDYIIGMDE 96 (161)
T ss_dssp ----GGGTCSEEEESSH
T ss_pred ----HHhhCCEEEEeCH
Confidence 2347999997653
No 131
>2yfk_A Aspartate/ornithine carbamoyltransferase; transcarbamylase; 2.55A {Enterococcus faecalis}
Probab=45.15 E-value=1e+02 Score=29.19 Aligned_cols=130 Identities=12% Similarity=0.071 Sum_probs=68.9
Q ss_pred CceEEEEE--E---CCch-hHHHHHHhhhcCCCCceEEEEeeCCCCC-CCcHHHH----HHHHcCCCEEEEcCCCCchHH
Q 024060 46 KYKVAVLA--S---KQEH-CLVDFLYGWQEGKLPVEITCVISNHDRG-PNSHVIR----FLERHGIPYHYLCAKENEREE 114 (273)
Q Consensus 46 ~~kiav~~--S---g~g~-~l~~ll~~~~~~~l~~~i~~Vvs~~~~~-~~~~~~~----~a~~~gIp~~~~~~~~~~~~~ 114 (273)
..||++++ + |.+. ....++.++. .++.++. ++ .++.- ....+.+ .|++.|..+....
T Consensus 188 Glkva~vgd~~~s~Gd~nnVa~Sli~~l~--~lG~~v~-l~-~P~~~~~~p~~~~~a~~~a~~~G~~v~~~~-------- 255 (418)
T 2yfk_A 188 GKKVAMTWAYSPSYGKPLSVPQGIVGLMT--RLGMDVV-LA-HPEGYEIMPEVEEVAKKNAAEFGGNFTKTN-------- 255 (418)
T ss_dssp TCEEEEECCCCSSSCCCSHHHHHHHHHHG--GGTCEEE-EE-CCTTCCCCHHHHHHHHHHHHHHSSEEEEES--------
T ss_pred CCEEEEEeccccccCccchHHHHHHHHHH--HcCCEEE-EE-CCccccCCHHHHHHHHHHHHHcCCEEEEEc--------
Confidence 47899986 2 4443 2345555542 2346654 33 33321 1233333 4567887666543
Q ss_pred HHHHHhcCCCEEEEEeecCCcchhhHhhhhh-----hhhhhhccc-Ccccccc-cccCChhHHhhcCC-CeeEeecCCCC
Q 024060 115 ELLELVQNTDFLVLARYMQPVPLQKEAYLGY-----KLLESLSSK-GSLTSYF-NMILSGKFLRSYGK-DVINIHHGLLP 186 (273)
Q Consensus 115 ~~~~~l~~~Dlvv~ag~~~~~p~~~~~~~~~-----~~~~~~~~~-~~~~~y~-~~il~~~~l~~~~~-~~iNiHpslLP 186 (273)
++.+.++++|+|..-.|..+ -.|+|+..-. .-++..+.. ....-|+ .|-+..+.++..+. .++-+||. |
T Consensus 256 d~~eav~~ADVVytd~W~sm-~~Q~ER~~~~~~g~~~~~~~~~~~~~~~~~~~~~y~vt~elm~~ak~~dai~MHcL--P 332 (418)
T 2yfk_A 256 SMAEAFKDADVVYPKSWAPF-AAMEKRTELYGNGDQAGIDQLEQELLSQNKKHKDWECTEELMKTTKDGKALYMHCL--P 332 (418)
T ss_dssp CHHHHHTTCSEEEECCCCCH-HHHHHHHHHHHHTCHHHHHHHHHHHHHHHGGGTTCCBCHHHHHTSGGGCCEECCCS--C
T ss_pred CHHHHhcCCCEEEEccccch-hHHHHHhhhhccccchhhhhhhhhhhhHHHHHhhcCCCHHHHHhcCCCCeEEECCC--C
Confidence 13456779999987666421 1244543211 000000000 0011233 47899999998865 69999985 9
Q ss_pred CCC-C
Q 024060 187 SFK-G 190 (273)
Q Consensus 187 ~yR-G 190 (273)
++| |
T Consensus 333 a~r~~ 337 (418)
T 2yfk_A 333 ADITG 337 (418)
T ss_dssp CCEET
T ss_pred CCCcc
Confidence 985 5
No 132
>1q0q_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; oxidoreductase; HET: DXP NDP; 1.90A {Escherichia coli} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1q0l_A* 1q0h_A* 3r0i_A* 1k5h_A 1onn_A 1ono_A 1onp_A* 1jvs_A* 1t1r_A* 1t1s_A* 2egh_A* 3anm_A* 3anl_A* 3ann_A* 3iie_A
Probab=44.56 E-value=66 Score=30.53 Aligned_cols=58 Identities=7% Similarity=0.105 Sum_probs=37.2
Q ss_pred CCCCceEEEEEECC--chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEc
Q 024060 43 IDPKYKVAVLASKQ--EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 106 (273)
Q Consensus 43 ~~~~~kiav~~Sg~--g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~ 106 (273)
.+.++||+||||.+ |++--+++.. ..-.++|+++..++. -.-+.+.|++++-.+..+.
T Consensus 6 ~~~~k~i~ILGSTGSIGtqtLdVi~~---~pd~f~V~aL~ag~n---v~~L~~q~~~f~p~~v~v~ 65 (406)
T 1q0q_A 6 HSGMKQLTILGSTGSIGCSTLDVVRH---NPEHFRVVALVAGKN---VTRMVEQCLEFSPRYAVMD 65 (406)
T ss_dssp ---CEEEEEETTTSHHHHHHHHHHHH---CTTTEEEEEEEESSC---HHHHHHHHHHHCCSEEEES
T ss_pred cCCceeEEEEccCcHHHHHHHHHHHh---CCCccEEEEEEcCCC---HHHHHHHHHHhCCCEEEEc
Confidence 34679999999754 4443344443 222489999988752 2346788889998877665
No 133
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=43.71 E-value=25 Score=33.33 Aligned_cols=71 Identities=21% Similarity=0.289 Sum_probs=41.7
Q ss_pred CCceEEEEEECC-chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhc--
Q 024060 45 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ-- 121 (273)
Q Consensus 45 ~~~kiav~~Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~-- 121 (273)
..|||.|+|.|. |..+...|.. + +++|+.| .++ ...+.+..+++++++..-+ ..++++++...
T Consensus 2 ~~M~iiI~G~G~vG~~la~~L~~--~---~~~v~vI--d~d---~~~~~~~~~~~~~~~i~Gd----~~~~~~L~~Agi~ 67 (461)
T 4g65_A 2 NAMKIIILGAGQVGGTLAENLVG--E---NNDITIV--DKD---GDRLRELQDKYDLRVVNGH----ASHPDVLHEAGAQ 67 (461)
T ss_dssp CCEEEEEECCSHHHHHHHHHTCS--T---TEEEEEE--ESC---HHHHHHHHHHSSCEEEESC----TTCHHHHHHHTTT
T ss_pred CcCEEEEECCCHHHHHHHHHHHH--C---CCCEEEE--ECC---HHHHHHHHHhcCcEEEEEc----CCCHHHHHhcCCC
Confidence 468999999886 6666554432 2 3677533 332 1234555677899887533 22344554443
Q ss_pred CCCEEEEE
Q 024060 122 NTDFLVLA 129 (273)
Q Consensus 122 ~~Dlvv~a 129 (273)
++|+++.+
T Consensus 68 ~ad~~ia~ 75 (461)
T 4g65_A 68 DADMLVAV 75 (461)
T ss_dssp TCSEEEEC
T ss_pred cCCEEEEE
Confidence 78887654
No 134
>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}
Probab=43.65 E-value=1.7e+02 Score=26.28 Aligned_cols=159 Identities=14% Similarity=0.159 Sum_probs=84.2
Q ss_pred CceEEEEEECC-chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCCC
Q 024060 46 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 124 (273)
Q Consensus 46 ~~kiav~~Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~D 124 (273)
.++|+|+|.|. |..+...+.+. | .+|. +.++.. . . +.+.+.|+.. . ++.+.++++|
T Consensus 146 g~~vgIIG~G~iG~~vA~~l~~~--G---~~V~--~~d~~~--~-~--~~~~~~g~~~---~--------~l~e~l~~aD 202 (333)
T 2d0i_A 146 GKKVGILGMGAIGKAIARRLIPF--G---VKLY--YWSRHR--K-V--NVEKELKARY---M--------DIDELLEKSD 202 (333)
T ss_dssp TCEEEEECCSHHHHHHHHHHGGG--T---CEEE--EECSSC--C-H--HHHHHHTEEE---C--------CHHHHHHHCS
T ss_pred cCEEEEEccCHHHHHHHHHHHHC--C---CEEE--EECCCc--c-h--hhhhhcCcee---c--------CHHHHHhhCC
Confidence 47899999886 55554444432 2 5553 344421 1 1 4455666521 1 1223455899
Q ss_pred EEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCCCCCCCCCh----HHHHHHHh
Q 024060 125 FLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGK----PAKQAFDA 200 (273)
Q Consensus 125 lvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~----p~~~ai~~ 200 (273)
+|+++--.. -..+.++..+.++..+.+ +-+.-| ||.- .+..++.+
T Consensus 203 iVil~vp~~-------------------------~~t~~~i~~~~~~~mk~g-ilin~s-----rg~~vd~~aL~~aL~~ 251 (333)
T 2d0i_A 203 IVILALPLT-------------------------RDTYHIINEERVKKLEGK-YLVNIG-----RGALVDEKAVTEAIKQ 251 (333)
T ss_dssp EEEECCCCC-------------------------TTTTTSBCHHHHHHTBTC-EEEECS-----CGGGBCHHHHHHHHHT
T ss_pred EEEEcCCCC-------------------------hHHHHHhCHHHHhhCCCC-EEEECC-----CCcccCHHHHHHHHHc
Confidence 998864221 112337777777777666 556666 6642 35567777
Q ss_pred CCCEeEEEEEEecCcc-CCCCeeEEE-EEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 024060 201 GVKLIGATSHFVTEEL-DAGPIIEQM-VERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELR 261 (273)
Q Consensus 201 G~~~~GvT~H~~~~~~-D~G~Ii~Q~-~~~I~~~dt~~~L~~rl~~~~~~ll~~~i~~l~~g~ 261 (273)
| ...|+-+++...+- ..-++.... .+-+.|+....+...+ ....+++.+.+..+.+|+
T Consensus 252 ~-~i~gaglDv~~~EP~~~~~L~~~~~nviltPh~~~~t~~~~--~~~~~~~~~n~~~~~~g~ 311 (333)
T 2d0i_A 252 G-KLKGYATDVFEKEPVREHELFKYEWETVLTPHYAGLALEAQ--EDVGFRAVENLLKVLRGE 311 (333)
T ss_dssp T-CBCEEEESCCSSSSCSCCGGGGCTTTEEECCSCTTCCHHHH--HHHHHHHHHHHHHHHTTC
T ss_pred C-CceEEEecCCCCCCCCCchHHcCCCCEEEcCccCCCcHHHH--HHHHHHHHHHHHHHHcCC
Confidence 6 45567777766332 122344333 4555555433222211 222344556666666775
No 135
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=43.52 E-value=73 Score=28.25 Aligned_cols=55 Identities=2% Similarity=-0.106 Sum_probs=33.3
Q ss_pred CCCCceEEEEEECC-ch--hHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEc
Q 024060 43 IDPKYKVAVLASKQ-EH--CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 106 (273)
Q Consensus 43 ~~~~~kiav~~Sg~-g~--~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~ 106 (273)
...|+||+++..+. |+ .+..|.+++.+. .++|. ++|.. ...+..++.|+++..++
T Consensus 17 ~~~m~rIl~~~~~~~GHv~p~l~La~~L~~~--Gh~V~-v~~~~------~~~~~~~~~G~~~~~~~ 74 (415)
T 3rsc_A 17 GRHMAHLLIVNVASHGLILPTLTVVTELVRR--GHRVS-YVTAG------GFAEPVRAAGATVVPYQ 74 (415)
T ss_dssp --CCCEEEEECCSCHHHHGGGHHHHHHHHHT--TCEEE-EEECG------GGHHHHHHTTCEEEECC
T ss_pred cccCCEEEEEeCCCccccccHHHHHHHHHHC--CCEEE-EEeCH------HHHHHHHhcCCEEEecc
Confidence 34578999988765 33 334455554432 37776 44432 24566778899988776
No 136
>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*
Probab=43.48 E-value=44 Score=31.05 Aligned_cols=73 Identities=16% Similarity=0.210 Sum_probs=37.7
Q ss_pred CCceEEEEEECC-ch-hHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHH---HcCCCE-EEEcCCCCchHHHHHH
Q 024060 45 PKYKVAVLASKQ-EH-CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLE---RHGIPY-HYLCAKENEREEELLE 118 (273)
Q Consensus 45 ~~~kiav~~Sg~-g~-~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~---~~gIp~-~~~~~~~~~~~~~~~~ 118 (273)
.++||+|+|.|. |. .+.++. . ...+++++|+... .....++++ ++|+|- ..+... ++.+.+
T Consensus 19 ~~~rvgiIG~G~~g~~h~~~l~----~-~~~~~lvav~d~~----~~~~~~~a~~~~~~g~~~~~~~~~~----~~~~~~ 85 (444)
T 2ixa_A 19 KKVRIAFIAVGLRGQTHVENMA----R-RDDVEIVAFADPD----PYMVGRAQEILKKNGKKPAKVFGNG----NDDYKN 85 (444)
T ss_dssp CCEEEEEECCSHHHHHHHHHHH----T-CTTEEEEEEECSC----HHHHHHHHHHHHHTTCCCCEEECSS----TTTHHH
T ss_pred CCceEEEEecCHHHHHHHHHHH----h-CCCcEEEEEEeCC----HHHHHHHHHHHHhcCCCCCceeccC----CCCHHH
Confidence 458999999875 22 233332 2 1147888876543 122344444 568752 222200 012344
Q ss_pred Hhc--CCCEEEEEe
Q 024060 119 LVQ--NTDFLVLAR 130 (273)
Q Consensus 119 ~l~--~~Dlvv~ag 130 (273)
+++ ++|+|+++.
T Consensus 86 ll~~~~vD~V~i~t 99 (444)
T 2ixa_A 86 MLKDKNIDAVFVSS 99 (444)
T ss_dssp HTTCTTCCEEEECC
T ss_pred HhcCCCCCEEEEcC
Confidence 554 578888775
No 137
>3jvi_A Protein tyrosine phosphatase; niaid, ssgcid, seattle structural genomics center for infect disease, parasitic protozoan, dysentery; 1.80A {Entamoeba histolytica} PDB: 3js5_A* 3ily_A 3ido_A*
Probab=43.42 E-value=50 Score=26.68 Aligned_cols=81 Identities=10% Similarity=-0.005 Sum_probs=43.2
Q ss_pred CCceEEEEEECCc--hhH-HHHHHhhh-cCCC--CceEE--EEeeCC-CCCCCcHHHHHHHHcCCCEEEEcCCCCchHHH
Q 024060 45 PKYKVAVLASKQE--HCL-VDFLYGWQ-EGKL--PVEIT--CVISNH-DRGPNSHVIRFLERHGIPYHYLCAKENEREEE 115 (273)
Q Consensus 45 ~~~kiav~~Sg~g--~~l-~~ll~~~~-~~~l--~~~i~--~Vvs~~-~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~ 115 (273)
+|+||.|+.+|+. |.+ ++++.... +..+ ..+|. ++-..+ ..+.+....+.++++||++ ... ......+
T Consensus 3 ~m~~vLFVC~gN~cRSpmAE~~~~~~~~~~gl~~~~~v~SAGt~~~~~G~~~~~~a~~~l~~~Gid~-~~~-ar~l~~~- 79 (161)
T 3jvi_A 3 GSMKLLFVCLGNICRSPAAEAVMKKVIQNHHLTEKYICDSAGTCSYHEGQQADSRMRKVGKSRGYQV-DSI-SRPVVSS- 79 (161)
T ss_dssp -CEEEEEEESSSSSHHHHHHHHHHHHHHHTTCGGGEEEEEEESCCTTTTCBCCHHHHHHHHHTTCCC-CCB-CCBCCHH-
T ss_pred CCcEEEEECCCchhHHHHHHHHHHHHHHHcCCCCcEEEEeeecCCcccCCCCCHHHHHHHHHcCcCC-CCe-eeECCHH-
Confidence 3579998888874 444 44555432 1111 13332 222211 2234566889999999998 322 1112222
Q ss_pred HHHHhcCCCEEEEEee
Q 024060 116 LLELVQNTDFLVLARY 131 (273)
Q Consensus 116 ~~~~l~~~Dlvv~ag~ 131 (273)
.+.++|+|+...-
T Consensus 80 ---~~~~~DlIl~Md~ 92 (161)
T 3jvi_A 80 ---DFKNFDYIFAMDN 92 (161)
T ss_dssp ---HHHHCSEEEESSH
T ss_pred ---HhcCCCEEEEeCh
Confidence 2236899997653
No 138
>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}
Probab=43.38 E-value=39 Score=29.98 Aligned_cols=33 Identities=3% Similarity=-0.095 Sum_probs=20.1
Q ss_pred CCceEEEEEEC-C-ch-hHHHHHHhhhcCCCCceEEEEeeCC
Q 024060 45 PKYKVAVLASK-Q-EH-CLVDFLYGWQEGKLPVEITCVISNH 83 (273)
Q Consensus 45 ~~~kiav~~Sg-~-g~-~l~~ll~~~~~~~l~~~i~~Vvs~~ 83 (273)
+|+||+|+|.| . +. .+.++.+ . +.++++|+...
T Consensus 2 ~mirvgiIG~gG~i~~~h~~~l~~----~--~~~lvav~d~~ 37 (318)
T 3oa2_A 2 HMKNFALIGAAGYIAPRHMRAIKD----T--GNCLVSAYDIN 37 (318)
T ss_dssp -CCEEEEETTTSSSHHHHHHHHHH----T--TCEEEEEECSS
T ss_pred CceEEEEECCCcHHHHHHHHHHHh----C--CCEEEEEEcCC
Confidence 57899999984 3 32 3333332 2 47888887544
No 139
>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A
Probab=43.31 E-value=15 Score=32.92 Aligned_cols=46 Identities=7% Similarity=0.076 Sum_probs=27.0
Q ss_pred CceEEEEEECCc-h-hHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCC
Q 024060 46 KYKVAVLASKQE-H-CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIP 101 (273)
Q Consensus 46 ~~kiav~~Sg~g-~-~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp 101 (273)
|+||+|+|.|.. . .....+.. ...+++++|+... ...++|+++++|
T Consensus 2 ~~rvgiiG~G~~g~~~~~~~l~~----~~~~~l~av~d~~------~~~~~a~~~~~~ 49 (349)
T 3i23_A 2 TVKMGFIGFGKSANRYHLPYVMI----RETLEVKTIFDLH------VNEKAAAPFKEK 49 (349)
T ss_dssp CEEEEEECCSHHHHHTTHHHHTT----CTTEEEEEEECTT------CCHHHHHHHHTT
T ss_pred eeEEEEEccCHHHHHHHHHHHhh----CCCeEEEEEECCC------HHHHHHHhhCCC
Confidence 579999999863 2 12222222 1248898887643 135777775443
No 140
>3by5_A Cobalamin biosynthesis protein; structural genomics, unknown function; 2.52A {Agrobacterium tumefaciens str} SCOP: c.151.1.1
Probab=43.12 E-value=49 Score=27.07 Aligned_cols=53 Identities=0% Similarity=0.018 Sum_probs=33.7
Q ss_pred EEECCchhH---HHHH-HhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEc
Q 024060 52 LASKQEHCL---VDFL-YGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 106 (273)
Q Consensus 52 ~~Sg~g~~l---~~ll-~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~ 106 (273)
+|..+++.. .+.+ +++++..+. |.++.|-..+..+..++++|+++|+|+..++
T Consensus 15 IGcrrg~~~~~i~~ai~~aL~~~gl~--v~~lATid~K~dE~gL~e~A~~lgvPl~~~~ 71 (155)
T 3by5_A 15 IGCRKGAASDAIIAAVRAAERAFGVT--VDYLATAPLKADEAGLAEAAKGLSLSLEIVA 71 (155)
T ss_dssp EEECSSCCHHHHHHHHHHHHHHHTCC--CCEEEESSCCSCCHHHHHHHHHTTCCEEECC
T ss_pred EccCCCCCHHHHHHHHHHHHHHCCCC--eEEEEchhhhCCCHHHHHHHHHhCCCeEEEC
Confidence 445555433 3322 334333343 6677776655556789999999999999875
No 141
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=42.96 E-value=45 Score=26.46 Aligned_cols=69 Identities=14% Similarity=0.079 Sum_probs=37.4
Q ss_pred CceEEEEEECC-chhHHHHHHhhhc-CCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHH---h
Q 024060 46 KYKVAVLASKQ-EHCLVDFLYGWQE-GKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLEL---V 120 (273)
Q Consensus 46 ~~kiav~~Sg~-g~~l~~ll~~~~~-~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~---l 120 (273)
..+|+|+|.|. |..+...|.. . | ++++++ ... ..-.+.+++.|+.+...+. .+++.+.. +
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~--~~g---~~V~vi-d~~-----~~~~~~~~~~g~~~~~gd~----~~~~~l~~~~~~ 103 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRA--RYG---KISLGI-EIR-----EEAAQQHRSEGRNVISGDA----TDPDFWERILDT 103 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHH--HHC---SCEEEE-ESC-----HHHHHHHHHTTCCEEECCT----TCHHHHHTBCSC
T ss_pred CCcEEEECCCHHHHHHHHHHHh--ccC---CeEEEE-ECC-----HHHHHHHHHCCCCEEEcCC----CCHHHHHhccCC
Confidence 46899998765 4444443432 2 3 455433 222 1234556678988765432 12333333 3
Q ss_pred cCCCEEEEE
Q 024060 121 QNTDFLVLA 129 (273)
Q Consensus 121 ~~~Dlvv~a 129 (273)
.++|++|++
T Consensus 104 ~~ad~vi~~ 112 (183)
T 3c85_A 104 GHVKLVLLA 112 (183)
T ss_dssp CCCCEEEEC
T ss_pred CCCCEEEEe
Confidence 479999864
No 142
>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}
Probab=42.74 E-value=36 Score=29.83 Aligned_cols=65 Identities=12% Similarity=0.153 Sum_probs=36.6
Q ss_pred ceEEEEEECC-chh--HHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhc--
Q 024060 47 YKVAVLASKQ-EHC--LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ-- 121 (273)
Q Consensus 47 ~kiav~~Sg~-g~~--l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~-- 121 (273)
+||+|+|.|. |.. +..+.+ + ..++++|+... .....++++++|++..+ . . +.++++
T Consensus 1 ~~vgiiG~G~~g~~~~~~~l~~----~--~~~~vav~d~~----~~~~~~~~~~~g~~~~~-~-----~---~~~~l~~~ 61 (332)
T 2glx_A 1 NRWGLIGASTIAREWVIGAIRA----T--GGEVVSMMSTS----AERGAAYATENGIGKSV-T-----S---VEELVGDP 61 (332)
T ss_dssp CEEEEESCCHHHHHTHHHHHHH----T--TCEEEEEECSC----HHHHHHHHHHTTCSCCB-S-----C---HHHHHTCT
T ss_pred CeEEEEcccHHHHHhhhHHhhc----C--CCeEEEEECCC----HHHHHHHHHHcCCCccc-C-----C---HHHHhcCC
Confidence 4899999875 322 233322 2 47887776543 23456778888987221 1 0 223343
Q ss_pred CCCEEEEEe
Q 024060 122 NTDFLVLAR 130 (273)
Q Consensus 122 ~~Dlvv~ag 130 (273)
++|+|+++.
T Consensus 62 ~~D~V~i~t 70 (332)
T 2glx_A 62 DVDAVYVST 70 (332)
T ss_dssp TCCEEEECS
T ss_pred CCCEEEEeC
Confidence 577777764
No 143
>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}
Probab=42.19 E-value=16 Score=32.19 Aligned_cols=37 Identities=5% Similarity=0.041 Sum_probs=21.5
Q ss_pred CCCCCceEEEEEECC-chh-HHHHHHhhhcCCCCceEEEEeeCC
Q 024060 42 DIDPKYKVAVLASKQ-EHC-LVDFLYGWQEGKLPVEITCVISNH 83 (273)
Q Consensus 42 ~~~~~~kiav~~Sg~-g~~-l~~ll~~~~~~~l~~~i~~Vvs~~ 83 (273)
...+++||+|+|.|. |.. +..|.+. + ..++++|+...
T Consensus 6 ~~~~~~~igiIG~G~~g~~~~~~l~~~---~--~~~~v~v~d~~ 44 (315)
T 3c1a_A 6 ANNSPVRLALIGAGRWGKNYIRTIAGL---P--GAALVRLASSN 44 (315)
T ss_dssp ---CCEEEEEEECTTTTTTHHHHHHHC---T--TEEEEEEEESC
T ss_pred CCCCcceEEEECCcHHHHHHHHHHHhC---C--CcEEEEEEeCC
Confidence 344668999999986 433 3434331 2 37788776643
No 144
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=41.94 E-value=30 Score=26.84 Aligned_cols=28 Identities=29% Similarity=0.496 Sum_probs=19.9
Q ss_pred cHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhc
Q 024060 89 SHVIRFLERHGIPYHYLCAKENEREEELLELVQ 121 (273)
Q Consensus 89 ~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~ 121 (273)
..+..+|+++|||++.++.+ .++-.++.
T Consensus 53 ~~l~~lc~~~~VP~~~v~sk-----~eLG~a~g 80 (121)
T 2lbw_A 53 SHIPVLCEDHSVPYIFIPSK-----QDLGAAGA 80 (121)
T ss_dssp HHHHHHHHHTCCCEEECCCH-----HHHHHHHT
T ss_pred HHHHHHHHhcCCcEEEECCH-----HHHHHHhC
Confidence 45778999999999887632 45555553
No 145
>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}
Probab=41.71 E-value=14 Score=31.63 Aligned_cols=66 Identities=14% Similarity=0.255 Sum_probs=35.5
Q ss_pred CceEEEEEECC-chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCCC
Q 024060 46 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 124 (273)
Q Consensus 46 ~~kiav~~Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~D 124 (273)
++||+|+|.|. |+.+...+.. .| ++++.++ +++ .....++++++|+.+. .. +.+.++++|
T Consensus 10 ~m~i~iiG~G~mG~~~a~~l~~--~g---~~~v~~~-~~~---~~~~~~~~~~~g~~~~--~~--------~~~~~~~~D 70 (266)
T 3d1l_A 10 DTPIVLIGAGNLATNLAKALYR--KG---FRIVQVY-SRT---EESARELAQKVEAEYT--TD--------LAEVNPYAK 70 (266)
T ss_dssp GCCEEEECCSHHHHHHHHHHHH--HT---CCEEEEE-CSS---HHHHHHHHHHTTCEEE--SC--------GGGSCSCCS
T ss_pred CCeEEEEcCCHHHHHHHHHHHH--CC---CeEEEEE-eCC---HHHHHHHHHHcCCcee--CC--------HHHHhcCCC
Confidence 47999999875 4444333322 23 4544444 432 2334556666687543 21 112344789
Q ss_pred EEEEEe
Q 024060 125 FLVLAR 130 (273)
Q Consensus 125 lvv~ag 130 (273)
+|+++-
T Consensus 71 vvi~av 76 (266)
T 3d1l_A 71 LYIVSL 76 (266)
T ss_dssp EEEECC
T ss_pred EEEEec
Confidence 988764
No 146
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=41.63 E-value=1.1e+02 Score=22.96 Aligned_cols=59 Identities=17% Similarity=0.232 Sum_probs=32.5
Q ss_pred CCceEEEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCC-----------CcHHHHHHHHcCCCEEEEc
Q 024060 45 PKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGP-----------NSHVIRFLERHGIPYHYLC 106 (273)
Q Consensus 45 ~~~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~-----------~~~~~~~a~~~gIp~~~~~ 106 (273)
.++|++|+|+|. ..+.+++.+++.. ..++++++.+.+... ...+.++++++++....+.
T Consensus 3 ~~~~vlIiGaG~--~g~~l~~~l~~~~-g~~vvg~~d~~~~~~g~~i~g~pV~g~~~l~~~~~~~~id~viia 72 (141)
T 3nkl_A 3 AKKKVLIYGAGS--AGLQLANMLRQGK-EFHPIAFIDDDRKKHKTTMQGITIYRPKYLERLIKKHCISTVLLA 72 (141)
T ss_dssp CCEEEEEECCSH--HHHHHHHHHHHSS-SEEEEEEECSCGGGTTCEETTEEEECGGGHHHHHHHHTCCEEEEC
T ss_pred CCCEEEEECCCH--HHHHHHHHHHhCC-CcEEEEEEECCcccCCCEecCeEEECHHHHHHHHHHCCCCEEEEe
Confidence 457888888764 2334444443322 588999987653211 1234555566666555444
No 147
>2y1e_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; oxidoreductase, DOXP/MEP pathway; 1.65A {Mycobacterium tuberculosis} PDB: 2jcv_A* 2jcz_A* 2jd2_A 2jd1_A 2y1d_A* 2y1c_A 2y1f_A* 2y1g_A* 3ras_A* 4a03_A* 4aic_A* 2jcx_A* 2jcy_A 2jd0_A* 2c82_A
Probab=41.22 E-value=68 Score=30.34 Aligned_cols=80 Identities=15% Similarity=0.211 Sum_probs=48.2
Q ss_pred CCCceEEEEEECC--chhHHHHHHhhhcCCCCceEEEEee-CCCCCCCcHHHHHHHHcCCCEEEEcCCCCc---------
Q 024060 44 DPKYKVAVLASKQ--EHCLVDFLYGWQEGKLPVEITCVIS-NHDRGPNSHVIRFLERHGIPYHYLCAKENE--------- 111 (273)
Q Consensus 44 ~~~~kiav~~Sg~--g~~l~~ll~~~~~~~l~~~i~~Vvs-~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~--------- 111 (273)
+.|+||+||||-+ |++--+++.. ..-.++|+++.. ++. -.-+.+.|++++-.+..+.+....
T Consensus 19 ~~mk~i~ILGSTGSIGtqtLdVi~~---~pd~f~V~aLaa~g~n---v~~L~~q~~~f~p~~v~v~d~~~~~~~~~~v~~ 92 (398)
T 2y1e_A 19 DGRLRVVVLGSTGSIGTQALQVIAD---NPDRFEVVGLAAGGAH---LDTLLRQRAQTGVTNIAVADEHAAQRVGDIPYH 92 (398)
T ss_dssp -CCEEEEEESTTSHHHHHHHHHHHH---CTTTEEEEEEEECSSC---HHHHHHHHHHHCCCCEEESCHHHHHHHCCCSEE
T ss_pred CCceEEEEEccCcHHHHHHHHHHHh---CCCceEEEEEEecCCC---HHHHHHHHHHcCCCEEEEcCHHHhhhcCCEEEe
Confidence 3468899999754 4443344443 222489999988 541 234678888998887766532100
Q ss_pred hHHHHHHHhc--CCCEEEEE
Q 024060 112 REEELLELVQ--NTDFLVLA 129 (273)
Q Consensus 112 ~~~~~~~~l~--~~Dlvv~a 129 (273)
-.+.+.+... ++|+|+.+
T Consensus 93 G~~~l~~~a~~~~~D~Vv~A 112 (398)
T 2y1e_A 93 GSDAATRLVEQTEADVVLNA 112 (398)
T ss_dssp STTHHHHHHHHSCCSEEEEC
T ss_pred cHHHHHHHhcCCCCCEEEEe
Confidence 0233555554 68999865
No 148
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=40.87 E-value=65 Score=26.28 Aligned_cols=55 Identities=18% Similarity=0.125 Sum_probs=34.6
Q ss_pred ceEEEEEECCc-h-hHHHHHHhhhcCCCCceEEEEeeCCCCCCC---cHHHHHHHHcCCCEEEEc
Q 024060 47 YKVAVLASKQE-H-CLVDFLYGWQEGKLPVEITCVISNHDRGPN---SHVIRFLERHGIPYHYLC 106 (273)
Q Consensus 47 ~kiav~~Sg~g-~-~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~---~~~~~~a~~~gIp~~~~~ 106 (273)
.|++|..||+- | .+..++.. .+ .++.+|..+...... ..+.++|++.|||...++
T Consensus 4 ~~v~v~lSGG~DS~~ll~ll~~--~~---~~v~~~~~~~~~~~~~e~~~a~~~a~~lgi~~~~~~ 63 (219)
T 3bl5_A 4 EKAIVVFSGGQDSTTCLLWALK--EF---EEVETVTFHYNQRHSQEVEVAKSIAEKLGVKNHLLD 63 (219)
T ss_dssp CEEEEECCSSHHHHHHHHHHHH--HC---SEEEEEEEESSCTTCHHHHHHHHHHHTTCCCEEEEE
T ss_pred CCEEEEccCcHHHHHHHHHHHH--cC---CceEEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEe
Confidence 58999999964 3 33334432 23 467666555432111 246788899999998876
No 149
>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}
Probab=40.54 E-value=60 Score=29.20 Aligned_cols=35 Identities=9% Similarity=0.082 Sum_probs=20.4
Q ss_pred CCceEEEEEECCc-hh-HHHHHHhhhcCCCCceEEEEeeCC
Q 024060 45 PKYKVAVLASKQE-HC-LVDFLYGWQEGKLPVEITCVISNH 83 (273)
Q Consensus 45 ~~~kiav~~Sg~g-~~-l~~ll~~~~~~~l~~~i~~Vvs~~ 83 (273)
+++||+|+|.|.. .. ....+... + .+++++|+...
T Consensus 6 ~~~rvgiiG~G~~g~~~~~~~l~~~--~--~~~l~av~d~~ 42 (364)
T 3e82_A 6 NTINIALIGYGFVGKTFHAPLIRSV--P--GLNLAFVASRD 42 (364)
T ss_dssp -CEEEEEECCSHHHHHTHHHHHHTS--T--TEEEEEEECSC
T ss_pred CcceEEEECCCHHHHHHHHHHHhhC--C--CeEEEEEEcCC
Confidence 5689999999863 22 22233321 2 47888877543
No 150
>1rlg_A 50S ribosomal protein L7AE; protein-RNA, structural protein/RNA complex; HET: 5BU; 2.70A {Archaeoglobus fulgidus} SCOP: d.79.3.1
Probab=40.30 E-value=55 Score=25.09 Aligned_cols=52 Identities=17% Similarity=0.287 Sum_probs=30.4
Q ss_pred HHHhhhcCCCCceEEEEeeCCCCCC-CcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhc
Q 024060 63 FLYGWQEGKLPVEITCVISNHDRGP-NSHVIRFLERHGIPYHYLCAKENEREEELLELVQ 121 (273)
Q Consensus 63 ll~~~~~~~l~~~i~~Vvs~~~~~~-~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~ 121 (273)
..+++++|+ +.++.+-++-+... -..+..+|+++|||++.+.. .+++-.++.
T Consensus 35 v~kal~~gk--a~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~~~s-----k~eLG~a~G 87 (119)
T 1rlg_A 35 TTKAVERGL--AKLVYIAEDVDPPEIVAHLPLLCEEKNVPYIYVKS-----KNDLGRAVG 87 (119)
T ss_dssp HHHHHTTTC--CSEEEEESCCSCSTTTTHHHHHHHHHTCCEEEESC-----HHHHHHHTT
T ss_pred HHHHHHcCC--CcEEEEeCCCChHHHHHHHHHHHHHcCCCEEEeCC-----HHHHHHHhC
Confidence 344444554 55543333332221 36788999999999987653 245666664
No 151
>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1
Probab=39.63 E-value=1.2e+02 Score=27.06 Aligned_cols=50 Identities=18% Similarity=0.129 Sum_probs=30.1
Q ss_pred CceEEEEEECC-chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEE
Q 024060 46 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYH 103 (273)
Q Consensus 46 ~~kiav~~Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~ 103 (273)
+.||||.|.|. |.. ++.++.+. ...++++|.... ......+++..|++++
T Consensus 2 ~irVgIiG~G~iG~~---~~r~l~~~-~~~elvav~d~~----~~~~~~~~~~~g~~~~ 52 (334)
T 2czc_A 2 KVKVGVNGYGTIGKR---VAYAVTKQ-DDMELIGITKTK----PDFEAYRAKELGIPVY 52 (334)
T ss_dssp CEEEEEECCSHHHHH---HHHHHHTC-TTEEEEEEEESS----CSHHHHHHHHTTCCEE
T ss_pred CcEEEEEeEhHHHHH---HHHHHhcC-CCCEEEEEEcCC----HHHHHHHHHhcCcccc
Confidence 47999999864 333 33332221 247888877642 2345677788888765
No 152
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=39.34 E-value=70 Score=28.61 Aligned_cols=54 Identities=15% Similarity=0.212 Sum_probs=31.8
Q ss_pred CceEEEEEECC-chh--HHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEc
Q 024060 46 KYKVAVLASKQ-EHC--LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 106 (273)
Q Consensus 46 ~~kiav~~Sg~-g~~--l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~ 106 (273)
++||.+.+.|+ ||. ..+|.+.+++. +++|..|-+.+ . --.++..+.|+|++.++
T Consensus 2 ~~~i~i~~GGTgGHi~palala~~L~~~--g~~V~~vg~~~-g----~e~~~v~~~g~~~~~i~ 58 (365)
T 3s2u_A 2 KGNVLIMAGGTGGHVFPALACAREFQAR--GYAVHWLGTPR-G----IENDLVPKAGLPLHLIQ 58 (365)
T ss_dssp -CEEEEECCSSHHHHHHHHHHHHHHHHT--TCEEEEEECSS-S----THHHHTGGGTCCEEECC
T ss_pred CCcEEEEcCCCHHHHHHHHHHHHHHHhC--CCEEEEEECCc-h----HhhchhhhcCCcEEEEE
Confidence 46888877777 443 34555655543 47876554332 1 11345667899988766
No 153
>2wja_A Putative acid phosphatase WZB; hydrolase; 2.50A {Escherichia coli}
Probab=39.30 E-value=40 Score=27.63 Aligned_cols=80 Identities=15% Similarity=0.160 Sum_probs=42.1
Q ss_pred CceEEEEEECCc--hhH-HHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcC
Q 024060 46 KYKVAVLASKQE--HCL-VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQN 122 (273)
Q Consensus 46 ~~kiav~~Sg~g--~~l-~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~ 122 (273)
++||.|+.+|+. |.+ ++++..... .+.+.=.++-.....+.+....+.++++||++.....+ ...++ .+.+
T Consensus 26 m~~VLFVCtgNicRSpmAEal~r~~~~-~~~v~SAGt~~~~g~~~~p~a~~vl~e~Gid~s~~~sr-~l~~~----~~~~ 99 (168)
T 2wja_A 26 FDSILVICTGNICRSPIGERLLRRLLP-SKKINSAGVGALVDHAADESAIRVAEKNGLCLKGHRGT-KFTSA----LARQ 99 (168)
T ss_dssp CSEEEEEESSSSSHHHHHHHHHHHHST-TSEEEEEETTCCTTCCCCHHHHHC---CCCCCTTCCCC-BCCHH----HHTT
T ss_pred cCEEEEEcCCcHHHHHHHHHHHHHhcC-CeEEEeeecCCCCCCCCCHHHHHHHHHcCCCcccCccC-CCChh----Hhcc
Confidence 358999988874 444 557765432 22222223222222334667888999999997421111 12222 2347
Q ss_pred CCEEEEEee
Q 024060 123 TDFLVLARY 131 (273)
Q Consensus 123 ~Dlvv~ag~ 131 (273)
+|+|+...-
T Consensus 100 ~DlIitM~~ 108 (168)
T 2wja_A 100 YDLLLVMEY 108 (168)
T ss_dssp CSEEEESSH
T ss_pred CCEEEEcCH
Confidence 999997653
No 154
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=39.05 E-value=39 Score=26.83 Aligned_cols=86 Identities=13% Similarity=0.206 Sum_probs=45.5
Q ss_pred cCCCCCCh--HhHHHHHHHHHHHhcccccccccCCCCCCceEEEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCC-
Q 024060 10 FDPIKWPR--EQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRG- 86 (273)
Q Consensus 10 ~~~~~~~~--~~l~~~f~~l~~~~~~~~~~~r~~~~~~~~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~- 86 (273)
..++.+|. ..+.+.+..+-. . +++ . .| +.+|.-..+.+ +++|+ +.++.+-.+-+..
T Consensus 4 ~~~~a~p~a~~~~~~ki~~~L~-l-A~k----~------gk---l~~G~~~v~ka----i~~gk--akLViiA~D~~p~~ 62 (134)
T 2ale_A 4 PNPKAFPLADAALTQQILDVVQ-Q-AAN----L------RQ---LKKGANEATKT----LNRGI--SEFIIMAADCEPIE 62 (134)
T ss_dssp CCTTCCSBCCHHHHHHHHHHHH-H-HHH----T------TC---EEESHHHHHHH----HHHTC--EEEEEEETTCSSGG
T ss_pred CCccccCCCCHHHHHHHHHHHH-H-HHH----c------CC---cccCchHHHHH----HHhCC--CeEEEEeCCCCHHH
Confidence 34667776 456666555443 1 121 1 12 45554444444 34453 5554333333221
Q ss_pred CCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhc
Q 024060 87 PNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ 121 (273)
Q Consensus 87 ~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~ 121 (273)
--..+..+|+++|||++++..+ .++-+++.
T Consensus 63 ~~~~l~~lc~~~~VP~~~v~sk-----~eLG~a~G 92 (134)
T 2ale_A 63 ILLHLPLLCEDKNVPYVFVPSR-----VALGRACG 92 (134)
T ss_dssp GGTHHHHHHHHHTCCEEEESCH-----HHHHHHTT
T ss_pred HHHHHHHHHHhcCCCEEEECCH-----HHHHHHhC
Confidence 1355789999999999887632 35666654
No 155
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=38.82 E-value=1.2e+02 Score=26.68 Aligned_cols=54 Identities=17% Similarity=0.314 Sum_probs=32.9
Q ss_pred CCCceEEEEEECC-ch--hHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEc
Q 024060 44 DPKYKVAVLASKQ-EH--CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 106 (273)
Q Consensus 44 ~~~~kiav~~Sg~-g~--~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~ 106 (273)
..+|||+++..+. |+ .+..|.+++++. .++|. |+|.. ...+..+..|+++..++
T Consensus 13 ~~~MrIl~~~~~~~gh~~~~~~La~~L~~~--GheV~-v~~~~------~~~~~~~~~G~~~~~~~ 69 (398)
T 4fzr_A 13 GSHMRILVIAGCSEGFVMPLVPLSWALRAA--GHEVL-VAASE------NMGPTVTGAGLPFAPTC 69 (398)
T ss_dssp --CCEEEEECCSSHHHHGGGHHHHHHHHHT--TCEEE-EEEEG------GGHHHHHHTTCCEEEEE
T ss_pred CCceEEEEEcCCCcchHHHHHHHHHHHHHC--CCEEE-EEcCH------HHHHHHHhCCCeeEecC
Confidence 3468999887554 33 234555555432 37776 44443 24577788999998876
No 156
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=38.73 E-value=79 Score=27.87 Aligned_cols=55 Identities=11% Similarity=0.009 Sum_probs=33.6
Q ss_pred CCCCceEEEEEECCch---hHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEc
Q 024060 43 IDPKYKVAVLASKQEH---CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 106 (273)
Q Consensus 43 ~~~~~kiav~~Sg~g~---~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~ 106 (273)
...+|||++++.+.+. .+..|.+++.+. .++|. |++.. ...+..++.|+++..++
T Consensus 17 ~~~~MrIl~~~~~~~Gh~~~~~~la~~L~~~--GheV~-v~~~~------~~~~~~~~~g~~~~~~~ 74 (412)
T 3otg_A 17 EGRHMRVLFASLGTHGHTYPLLPLATAARAA--GHEVT-FATGE------GFAGTLRKLGFEPVATG 74 (412)
T ss_dssp -CCSCEEEEECCSSHHHHGGGHHHHHHHHHT--TCEEE-EEECG------GGHHHHHHTTCEEEECC
T ss_pred ccceeEEEEEcCCCcccHHHHHHHHHHHHHC--CCEEE-EEccH------HHHHHHHhcCCceeecC
Confidence 3456899988866532 233455554432 37776 44543 13567788899998776
No 157
>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A
Probab=38.68 E-value=2.1e+02 Score=25.41 Aligned_cols=161 Identities=13% Similarity=0.120 Sum_probs=80.6
Q ss_pred CceEEEEEECC-chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCCC
Q 024060 46 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 124 (273)
Q Consensus 46 ~~kiav~~Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~D 124 (273)
.+||+|+|.|. |..+...+... | ++|.+ + ++... . .+.+.+.|+... + +.+.++++|
T Consensus 155 g~~vgIIG~G~iG~~iA~~l~~~--G---~~V~~-~-d~~~~-~---~~~~~~~g~~~~--~---------l~e~l~~aD 212 (330)
T 2gcg_A 155 QSTVGIIGLGRIGQAIARRLKPF--G---VQRFL-Y-TGRQP-R---PEEAAEFQAEFV--S---------TPELAAQSD 212 (330)
T ss_dssp TCEEEEECCSHHHHHHHHHHGGG--T---CCEEE-E-ESSSC-C---HHHHHTTTCEEC--C---------HHHHHHHCS
T ss_pred CCEEEEECcCHHHHHHHHHHHHC--C---CEEEE-E-CCCCc-c---hhHHHhcCceeC--C---------HHHHHhhCC
Confidence 47899999876 45554444332 3 45542 3 32111 1 233455564321 1 233455889
Q ss_pred EEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCCCCCCCCC----hHHHHHHHh
Q 024060 125 FLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG----KPAKQAFDA 200 (273)
Q Consensus 125 lvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~----~p~~~ai~~ 200 (273)
+|+++--.. -..+.++..++++..+.+.+=+.-| ||. ..+..++.+
T Consensus 213 vVi~~vp~~-------------------------~~t~~~i~~~~~~~mk~gailIn~s-----rg~~v~~~aL~~aL~~ 262 (330)
T 2gcg_A 213 FIVVACSLT-------------------------PATEGLCNKDFFQKMKETAVFINIS-----RGDVVNQDDLYQALAS 262 (330)
T ss_dssp EEEECCCCC-------------------------TTTTTCBSHHHHHHSCTTCEEEECS-----CGGGBCHHHHHHHHHH
T ss_pred EEEEeCCCC-------------------------hHHHHhhCHHHHhcCCCCcEEEECC-----CCcccCHHHHHHHHHc
Confidence 998764221 0112366667777766554334333 342 356777777
Q ss_pred CCCEeEEEEEEecCc-cCCCC-eeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 024060 201 GVKLIGATSHFVTEE-LDAGP-IIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELR 261 (273)
Q Consensus 201 G~~~~GvT~H~~~~~-~D~G~-Ii~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~i~~l~~g~ 261 (273)
|. ..|+.+++..++ +..+. ++....+-+.|+....+... .....+.+.+.+..+.+|+
T Consensus 263 ~~-i~ga~lDv~~~epl~~~~~l~~~~nvi~tPh~~~~t~~~--~~~~~~~~~~n~~~~~~g~ 322 (330)
T 2gcg_A 263 GK-IAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRT--RNTMSLLAANNLLAGLRGE 322 (330)
T ss_dssp TS-SSEEEESCCSSSSCCTTCGGGGCTTEEECCSCTTCBHHH--HHHHHHHHHHHHHHHHHTC
T ss_pred CC-ccEEEeCCCCCCCCCCCChhhcCCCEEECCCCCCCcHHH--HHHHHHHHHHHHHHHHcCC
Confidence 63 557777777655 24443 33333444544432222111 1222344555666666775
No 158
>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A
Probab=38.11 E-value=1.1e+02 Score=27.98 Aligned_cols=162 Identities=13% Similarity=0.152 Sum_probs=85.5
Q ss_pred CceEEEEEECC-chhHHHHHHhhhcCCCCce-EEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCC
Q 024060 46 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVE-ITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 123 (273)
Q Consensus 46 ~~kiav~~Sg~-g~~l~~ll~~~~~~~l~~~-i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~ 123 (273)
.++|+|+|.|. |..+...+.++ ..+ |. +.++... . .+.+.+.|+.. +. ++.++++++
T Consensus 164 g~tvgIIG~G~IG~~vA~~l~~~-----G~~~V~--~~d~~~~--~--~~~~~~~g~~~--~~--------~l~ell~~a 222 (364)
T 2j6i_A 164 GKTIATIGAGRIGYRVLERLVPF-----NPKELL--YYDYQAL--P--KDAEEKVGARR--VE--------NIEELVAQA 222 (364)
T ss_dssp TCEEEEECCSHHHHHHHHHHGGG-----CCSEEE--EECSSCC--C--HHHHHHTTEEE--CS--------SHHHHHHTC
T ss_pred CCEEEEECcCHHHHHHHHHHHhC-----CCcEEE--EECCCcc--c--hhHHHhcCcEe--cC--------CHHHHHhcC
Confidence 47899999876 55555545432 254 53 3343211 1 24566677432 11 133455689
Q ss_pred CEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCCCCCCCCC----hHHHHHHH
Q 024060 124 DFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG----KPAKQAFD 199 (273)
Q Consensus 124 Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~----~p~~~ai~ 199 (273)
|+|+++- |+. -.-+.++..+.++..+.+.+=+--| ||. ..+..|+.
T Consensus 223 DvV~l~~-----P~t--------------------~~t~~li~~~~l~~mk~ga~lIn~a-----rG~~vd~~aL~~aL~ 272 (364)
T 2j6i_A 223 DIVTVNA-----PLH--------------------AGTKGLINKELLSKFKKGAWLVNTA-----RGAICVAEDVAAALE 272 (364)
T ss_dssp SEEEECC-----CCS--------------------TTTTTCBCHHHHTTSCTTEEEEECS-----CGGGBCHHHHHHHHH
T ss_pred CEEEECC-----CCC--------------------hHHHHHhCHHHHhhCCCCCEEEECC-----CCchhCHHHHHHHHH
Confidence 9998763 221 1122377788888777665444444 563 46778888
Q ss_pred hCCCEeEEEEEEecCc--cCCCCeeEE--E---EEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 024060 200 AGVKLIGATSHFVTEE--LDAGPIIEQ--M---VERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELR 261 (273)
Q Consensus 200 ~G~~~~GvT~H~~~~~--~D~G~Ii~Q--~---~~~I~~~dt~~~L~~rl~~~~~~ll~~~i~~l~~g~ 261 (273)
+|. ..|+-+=..+.+ ...-+.... . .+-+.|+-...+...+ ....+.+.+.+..+.+|+
T Consensus 273 ~g~-i~gA~LDVf~~EP~~~~~pL~~~~~~~~~nvilTPHia~~t~e~~--~~~~~~~~~nl~~~~~g~ 338 (364)
T 2j6i_A 273 SGQ-LRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAMTPHYSGTTLDAQ--TRYAQGTVNILESFFTGK 338 (364)
T ss_dssp HTS-EEEEEESCCSSSSCCTTCHHHHCCCTTSCCEEECCSCGGGSHHHH--HHHHHHHHHHHHHHHTTC
T ss_pred cCC-CcEEEEecCCCCCCCCCChHHhccCCccCcEEECCccCcCCHHHH--HHHHHHHHHHHHHHHcCC
Confidence 875 444444333333 222233332 2 4566776544333322 112344566677777886
No 159
>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}
Probab=38.08 E-value=1.5e+02 Score=26.49 Aligned_cols=104 Identities=14% Similarity=0.220 Sum_probs=59.7
Q ss_pred CCceEEEEEECCc--hhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcC
Q 024060 45 PKYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQN 122 (273)
Q Consensus 45 ~~~kiav~~Sg~g--~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~ 122 (273)
...+++|+|+|.- ..+++|.... + ..+| .+.|++ ....-..++.+++|+++..+ . +.+.+++
T Consensus 120 ~~~~v~iIGaG~~a~~~~~al~~~~--~--~~~V--~v~~r~-~a~~la~~l~~~~g~~~~~~-~--------~~eav~~ 183 (313)
T 3hdj_A 120 RSSVLGLFGAGTQGAEHAAQLSARF--A--LEAI--LVHDPY-ASPEILERIGRRCGVPARMA-A--------PADIAAQ 183 (313)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHHS--C--CCEE--EEECTT-CCHHHHHHHHHHHTSCEEEC-C--------HHHHHHH
T ss_pred CCcEEEEECccHHHHHHHHHHHHhC--C--CcEE--EEECCc-HHHHHHHHHHHhcCCeEEEe-C--------HHHHHhh
Confidence 3478999998852 3455555421 1 1233 355665 21111223334568887653 1 2234558
Q ss_pred CCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCCCCCCCCChHH
Q 024060 123 TDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPA 194 (273)
Q Consensus 123 ~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~p~ 194 (273)
+|+|+++--.. -| ++..+.++ ++..|+-..|.-|.-|-..+-
T Consensus 184 aDIVi~aT~s~-~p---------------------------vl~~~~l~--~G~~V~~vGs~~p~~~El~~~ 225 (313)
T 3hdj_A 184 ADIVVTATRST-TP---------------------------LFAGQALR--AGAFVGAIGSSLPHTRELDDE 225 (313)
T ss_dssp CSEEEECCCCS-SC---------------------------SSCGGGCC--TTCEEEECCCSSTTCCCCCHH
T ss_pred CCEEEEccCCC-Cc---------------------------ccCHHHcC--CCcEEEECCCCCCchhhcCHH
Confidence 99999886432 12 55554443 456888888888887776654
No 160
>4etm_A LMPTP, low molecular weight protein-tyrosine-phosphatase; dephosphorylation, hydrolase; 1.60A {Bacillus subtilis}
Probab=37.79 E-value=64 Score=26.47 Aligned_cols=84 Identities=13% Similarity=0.216 Sum_probs=46.0
Q ss_pred CCCCceEEEEEECCc--hhH-HHHHHhh-hcCCCC--ceE--EEEeeCC-CCCCCcHHHHHHHHcCCCEEEEcCCCCchH
Q 024060 43 IDPKYKVAVLASKQE--HCL-VDFLYGW-QEGKLP--VEI--TCVISNH-DRGPNSHVIRFLERHGIPYHYLCAKENERE 113 (273)
Q Consensus 43 ~~~~~kiav~~Sg~g--~~l-~~ll~~~-~~~~l~--~~i--~~Vvs~~-~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~ 113 (273)
..+|+||.|+.+|+. |.+ ++++... ++..+. .+| +++-..+ ..+.+....+.++++||++.....+ ....
T Consensus 15 ~~~M~kVLFVCtGNiCRSpmAE~i~r~~~~~~gl~~~~~v~SAGt~~~~~G~~~d~~a~~~l~~~Gid~s~h~ar-~l~~ 93 (173)
T 4etm_A 15 RGSMISVLFVCLGNICRSPMAEAIFRDLAAKKGLEGKIKADSAGIGGWHIGNPPHEGTQEILRREGISFDGMLAR-QVSE 93 (173)
T ss_dssp CSSCEEEEEEESSSSSHHHHHHHHHHHHHHHTTCTTTEEEEEEESSCTTTTCCCCHHHHHHHHHTTCCCTTCCCC-BCCH
T ss_pred CCCccEEEEEeCCcchhhHHHHHHHHHHHHHcCCCCceEEeccccccCCCCCCCCHHHHHHHHHCCccccCCccc-cCCH
Confidence 456789999999984 444 4455432 222222 333 2222222 2234556889999999997521111 1222
Q ss_pred HHHHHHhcCCCEEEEEee
Q 024060 114 EELLELVQNTDFLVLARY 131 (273)
Q Consensus 114 ~~~~~~l~~~Dlvv~ag~ 131 (273)
+. ++++|+|+...-
T Consensus 94 ~d----~~~~DlIl~Md~ 107 (173)
T 4etm_A 94 QD----LDDFDYIIAMDA 107 (173)
T ss_dssp HH----HHHCSEEEESSH
T ss_pred hh----cCCCCEEEEeCc
Confidence 22 236799987653
No 161
>2h78_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC6014, pseudomonas aeruginosa PA01, PSI-2, structural genomics; HET: PG4; 2.20A {Pseudomonas aeruginosa} PDB: 3cum_A 3obb_A* 3q3c_A*
Probab=37.57 E-value=41 Score=29.13 Aligned_cols=65 Identities=12% Similarity=0.079 Sum_probs=35.1
Q ss_pred CCceEEEEEECC-chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCC
Q 024060 45 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 123 (273)
Q Consensus 45 ~~~kiav~~Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~ 123 (273)
.++||+|+|.|. |..+...+.. .| ++|. +.+++ ..-.+.+.+.|+... . ...+.++++
T Consensus 2 ~m~~I~iiG~G~mG~~~a~~l~~--~G---~~V~--~~d~~----~~~~~~~~~~g~~~~--~--------~~~~~~~~a 60 (302)
T 2h78_A 2 HMKQIAFIGLGHMGAPMATNLLK--AG---YLLN--VFDLV----QSAVDGLVAAGASAA--R--------SARDAVQGA 60 (302)
T ss_dssp -CCEEEEECCSTTHHHHHHHHHH--TT---CEEE--EECSS----HHHHHHHHHTTCEEC--S--------SHHHHHTTC
T ss_pred CCCEEEEEeecHHHHHHHHHHHh--CC---CeEE--EEcCC----HHHHHHHHHCCCeEc--C--------CHHHHHhCC
Confidence 358999999987 5555443322 23 4553 33542 122344455575432 1 122345588
Q ss_pred CEEEEEe
Q 024060 124 DFLVLAR 130 (273)
Q Consensus 124 Dlvv~ag 130 (273)
|+|+++-
T Consensus 61 Dvvi~~v 67 (302)
T 2h78_A 61 DVVISML 67 (302)
T ss_dssp SEEEECC
T ss_pred CeEEEEC
Confidence 9998763
No 162
>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}
Probab=37.52 E-value=96 Score=29.19 Aligned_cols=102 Identities=11% Similarity=0.146 Sum_probs=58.0
Q ss_pred CCceEEEEEECC-chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCC----------C----
Q 024060 45 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAK----------E---- 109 (273)
Q Consensus 45 ~~~kiav~~Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~----------~---- 109 (273)
+..||+|+|.|. |.....++..+ .++|. +.++. ...++.+++.|..+...+.. .
T Consensus 189 ~~~kV~ViG~G~iG~~aa~~a~~l-----Ga~V~--v~D~~----~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~ 257 (405)
T 4dio_A 189 PAAKIFVMGAGVAGLQAIATARRL-----GAVVS--ATDVR----PAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEM 257 (405)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-----TCEEE--EECSS----TTHHHHHHHTTCEECCCCC----------------
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC-----CCEEE--EEcCC----HHHHHHHHHcCCceeecccccccccccccchhhhc
Confidence 457999999875 45555555543 35553 44442 12356777788764322100 0
Q ss_pred -Cc----hHHHHHHHhcCCCEEEEEe--ecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeec
Q 024060 110 -NE----REEELLELVQNTDFLVLAR--YMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHH 182 (273)
Q Consensus 110 -~~----~~~~~~~~l~~~Dlvv~ag--~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHp 182 (273)
+. ..+.+.+.++++|+||.+- .+..-| .++..+.++..+.|.+-+=-
T Consensus 258 s~~~~~~~~~~l~e~l~~aDVVI~tvlipg~~ap--------------------------~Lvt~emv~~Mk~GsVIVDv 311 (405)
T 4dio_A 258 SGEYQVKQAALVAEHIAKQDIVITTALIPGRPAP--------------------------RLVTREMLDSMKPGSVVVDL 311 (405)
T ss_dssp -CHHHHHHHHHHHHHHHTCSEEEECCCCSSSCCC--------------------------CCBCHHHHTTSCTTCEEEET
T ss_pred chhhhhhhHhHHHHHhcCCCEEEECCcCCCCCCC--------------------------EEecHHHHhcCCCCCEEEEE
Confidence 00 0134566667999998653 122122 17889999988877655544
Q ss_pred C
Q 024060 183 G 183 (273)
Q Consensus 183 s 183 (273)
|
T Consensus 312 A 312 (405)
T 4dio_A 312 A 312 (405)
T ss_dssp T
T ss_pred e
Confidence 4
No 163
>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B
Probab=37.47 E-value=1.5e+02 Score=26.79 Aligned_cols=162 Identities=10% Similarity=0.057 Sum_probs=82.7
Q ss_pred CceEEEEEECC-chhHHHHHH-hhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCC
Q 024060 46 KYKVAVLASKQ-EHCLVDFLY-GWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 123 (273)
Q Consensus 46 ~~kiav~~Sg~-g~~l~~ll~-~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~ 123 (273)
.++|+|+|.|. |..+...+. +. ..+|. +.++... . .+.+.+.|+.+. . ++.++++++
T Consensus 163 g~~vgIIG~G~IG~~vA~~l~~~~-----G~~V~--~~d~~~~--~--~~~~~~~g~~~~--~--------~l~ell~~a 221 (348)
T 2w2k_A 163 GHVLGAVGLGAIQKEIARKAVHGL-----GMKLV--YYDVAPA--D--AETEKALGAERV--D--------SLEELARRS 221 (348)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTT-----CCEEE--EECSSCC--C--HHHHHHHTCEEC--S--------SHHHHHHHC
T ss_pred CCEEEEEEECHHHHHHHHHHHHhc-----CCEEE--EECCCCc--c--hhhHhhcCcEEe--C--------CHHHHhccC
Confidence 47899999876 455444443 32 24553 3444211 1 233455665421 1 123345589
Q ss_pred CEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCCCCCCCCC----hHHHHHHH
Q 024060 124 DFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG----KPAKQAFD 199 (273)
Q Consensus 124 Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~----~p~~~ai~ 199 (273)
|+|+++--.. -..+.++..+.++..+.+.+=+.-| ||. ..+..++.
T Consensus 222 DvVil~vp~~-------------------------~~t~~li~~~~l~~mk~gailin~s-----rg~~vd~~aL~~aL~ 271 (348)
T 2w2k_A 222 DCVSVSVPYM-------------------------KLTHHLIDEAFFAAMKPGSRIVNTA-----RGPVISQDALIAALK 271 (348)
T ss_dssp SEEEECCCCS-------------------------GGGTTCBCHHHHHHSCTTEEEEECS-----CGGGBCHHHHHHHHH
T ss_pred CEEEEeCCCC-------------------------hHHHHHhhHHHHhcCCCCCEEEECC-----CCchhCHHHHHHHHH
Confidence 9999864221 1122377777888777665444433 442 35677777
Q ss_pred hCCCEeEEEEEEecCccCC-CCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 024060 200 AGVKLIGATSHFVTEELDA-GPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELR 261 (273)
Q Consensus 200 ~G~~~~GvT~H~~~~~~D~-G~Ii~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~i~~l~~g~ 261 (273)
+| ...|+-+++...+-.. -+.+....+-+.|+....+...+ ....+++.+.+..+.+|+
T Consensus 272 ~~-~i~gaglDv~~~EP~~~~~L~~~~nviltPH~~~~t~e~~--~~~~~~~~~ni~~~~~g~ 331 (348)
T 2w2k_A 272 SG-KLLSAGLDVHEFEPQVSKELIEMKHVTLTTHIGGVAIETF--HEFERLTMTNIDRFLLQG 331 (348)
T ss_dssp TT-SEEEEEESSCTTTTSCCHHHHTSSSEEECCSCTTCSHHHH--HHHHHHHHHHHHHHHHTC
T ss_pred hC-CceEEEeccCCCCCCCCchhhcCCCEEEcCcCCCCCHHHH--HHHHHHHHHHHHHHHcCC
Confidence 76 5677778777654211 12333334545554432222211 112334445555555664
No 164
>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*
Probab=37.37 E-value=1.3e+02 Score=26.91 Aligned_cols=160 Identities=15% Similarity=0.180 Sum_probs=82.7
Q ss_pred CceEEEEEECC-chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCCC
Q 024060 46 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 124 (273)
Q Consensus 46 ~~kiav~~Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~D 124 (273)
.+||+|+|.|. |..+...+... | .+|. +.++.. .. +.+.+.|+.+ . ++.+.++++|
T Consensus 150 g~~vgIIG~G~iG~~iA~~l~~~--G---~~V~--~~d~~~---~~--~~~~~~g~~~---~--------~l~~~l~~aD 206 (334)
T 2dbq_A 150 GKTIGIIGLGRIGQAIAKRAKGF--N---MRIL--YYSRTR---KE--EVERELNAEF---K--------PLEDLLRESD 206 (334)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHT--T---CEEE--EECSSC---CH--HHHHHHCCEE---C--------CHHHHHHHCS
T ss_pred CCEEEEEccCHHHHHHHHHHHhC--C---CEEE--EECCCc---ch--hhHhhcCccc---C--------CHHHHHhhCC
Confidence 47899999876 55554444432 2 5653 334421 11 4455667632 1 1233456889
Q ss_pred EEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCCCCCCCCC----hHHHHHHHh
Q 024060 125 FLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG----KPAKQAFDA 200 (273)
Q Consensus 125 lvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~----~p~~~ai~~ 200 (273)
+|+++--.. -..+.++..++++..+.+.+-+.-| ||. ..+..++.+
T Consensus 207 vVil~vp~~-------------------------~~t~~~i~~~~~~~mk~~ailIn~s-----rg~~v~~~aL~~aL~~ 256 (334)
T 2dbq_A 207 FVVLAVPLT-------------------------RETYHLINEERLKLMKKTAILINIA-----RGKVVDTNALVKALKE 256 (334)
T ss_dssp EEEECCCCC-------------------------TTTTTCBCHHHHHHSCTTCEEEECS-----CGGGBCHHHHHHHHHH
T ss_pred EEEECCCCC-------------------------hHHHHhhCHHHHhcCCCCcEEEECC-----CCcccCHHHHHHHHHh
Confidence 998764221 1122366677777776665556555 563 246677777
Q ss_pred CCCEeEEEEEEecCccCC-CCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 024060 201 GVKLIGATSHFVTEELDA-GPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELR 261 (273)
Q Consensus 201 G~~~~GvT~H~~~~~~D~-G~Ii~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~i~~l~~g~ 261 (273)
| ...|+-+++...+-.. -+.+.-..+-+.|+....+... .....+.+.+.+..+.+|+
T Consensus 257 ~-~i~ga~lDv~~~EP~~~~~L~~~~~vi~tPh~~~~t~~~--~~~~~~~~~~n~~~~~~g~ 315 (334)
T 2dbq_A 257 G-WIAGAGLDVFEEEPYYNEELFKLDNVVLTPHIGSASFGA--REGMAELVAKNLIAFKRGE 315 (334)
T ss_dssp T-SSSEEEESCCSSSSCCCHHHHHCTTEEECSSCTTCSHHH--HHHHHHHHHHHHHHHHTTC
T ss_pred C-CeeEEEecCCCCCCCCCchhhcCCCEEECCccCCCcHHH--HHHHHHHHHHHHHHHHcCC
Confidence 6 4556667766544211 1233333344544432222111 1222445556666666775
No 165
>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}
Probab=36.85 E-value=18 Score=30.75 Aligned_cols=67 Identities=13% Similarity=0.264 Sum_probs=36.2
Q ss_pred CceEEEEEECC-chhHH-HHHHhhhcCCCC-ceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcC
Q 024060 46 KYKVAVLASKQ-EHCLV-DFLYGWQEGKLP-VEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQN 122 (273)
Q Consensus 46 ~~kiav~~Sg~-g~~l~-~ll~~~~~~~l~-~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~ 122 (273)
++||+|+|.|. |+.+. .|.++ |..+ .+|. +.+++ .....++++++|+.+. . . ..+.+++
T Consensus 2 ~~~i~iIG~G~mG~~~a~~l~~~---g~~~~~~V~--~~~r~---~~~~~~~~~~~g~~~~--~----~----~~e~~~~ 63 (247)
T 3gt0_A 2 DKQIGFIGCGNMGMAMIGGMINK---NIVSSNQII--CSDLN---TANLKNASEKYGLTTT--T----D----NNEVAKN 63 (247)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHT---TSSCGGGEE--EECSC---HHHHHHHHHHHCCEEC--S----C----HHHHHHH
T ss_pred CCeEEEECccHHHHHHHHHHHhC---CCCCCCeEE--EEeCC---HHHHHHHHHHhCCEEe--C----C----hHHHHHh
Confidence 37899999886 44443 33332 3221 2443 34542 2345556667787542 1 1 1223447
Q ss_pred CCEEEEEe
Q 024060 123 TDFLVLAR 130 (273)
Q Consensus 123 ~Dlvv~ag 130 (273)
+|+|+++-
T Consensus 64 aDvVilav 71 (247)
T 3gt0_A 64 ADILILSI 71 (247)
T ss_dssp CSEEEECS
T ss_pred CCEEEEEe
Confidence 89999875
No 166
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=36.82 E-value=1.1e+02 Score=27.10 Aligned_cols=52 Identities=12% Similarity=0.233 Sum_probs=32.1
Q ss_pred CCceEEEEEECC-ch--hHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEc
Q 024060 45 PKYKVAVLASKQ-EH--CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 106 (273)
Q Consensus 45 ~~~kiav~~Sg~-g~--~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~ 106 (273)
.+|||+|+..+. |+ .+..|.+++++. .++|. |+|. + ..+..+..|+++..++
T Consensus 19 ~~MrIl~~~~~~~Ghv~~~~~La~~L~~~--GheV~-v~~~-~------~~~~~~~~G~~~~~~~ 73 (398)
T 3oti_A 19 RHMRVLFVSSPGIGHLFPLIQLAWGFRTA--GHDVL-IAVA-E------HADRAAAAGLEVVDVA 73 (398)
T ss_dssp CCCEEEEECCSSHHHHGGGHHHHHHHHHT--TCEEE-EEES-S------CHHHHHTTTCEEEESS
T ss_pred hcCEEEEEcCCCcchHhHHHHHHHHHHHC--CCEEE-Eecc-c------hHHHHHhCCCeeEecC
Confidence 458999987554 33 334555555442 37776 4444 2 2466778899988766
No 167
>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*
Probab=36.54 E-value=55 Score=28.03 Aligned_cols=101 Identities=9% Similarity=0.074 Sum_probs=55.2
Q ss_pred CCChHhHHHHHHHHHHHhccc----------ccccccCCCCCCceEEEEEECCchhHHHHHHhhhcCCCCceEEEEeeCC
Q 024060 14 KWPREQMDEDFFKLSKMFNAM----------RSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNH 83 (273)
Q Consensus 14 ~~~~~~l~~~f~~l~~~~~~~----------~~~~r~~~~~~~~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~ 83 (273)
++...|+|+||+.+++ |-.. ....+.-..+.+.|+++.|.|+ .-++|+........+.++++++-..
T Consensus 43 gv~~~qiRkDls~fg~-~G~~g~GY~V~~L~~~i~~~Lg~~~~~~V~IvGaG~--lG~aLa~~~~~~~~g~~iVg~~D~d 119 (212)
T 3keo_A 43 GIDSATVRRDFSYFGE-LGRRGFGYDVKKLMNFFAEILNDHSTTNVMLVGCGN--IGRALLHYRFHDRNKMQISMAFDLD 119 (212)
T ss_dssp TSCHHHHHHHHHTTGG-GTTTSSSEEHHHHHHHHHHHTTTTSCEEEEEECCSH--HHHHHTTCCCCTTSSEEEEEEEECT
T ss_pred CCCHHHHHHHHHHHhh-cCCCCCCEEHHHHHHHHHHHhCCCCCCEEEEECcCH--HHHHHHHhhhcccCCeEEEEEEeCC
Confidence 4455788888876653 2100 0000111244567888888764 3344555422223368999999755
Q ss_pred CC-CCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhc--CCCEEEEEe
Q 024060 84 DR-GPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ--NTDFLVLAR 130 (273)
Q Consensus 84 ~~-~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~--~~Dlvv~ag 130 (273)
++ ..+. +.-+|+|++.. +++.+.++ ++|.+++|-
T Consensus 120 p~~kiG~-----~~i~GvpV~~~--------~dL~~~v~~~~Id~vIIAv 156 (212)
T 3keo_A 120 SNDLVGK-----TTEDGIPVYGI--------STINDHLIDSDIETAILTV 156 (212)
T ss_dssp TSTTTTC-----BCTTCCBEEEG--------GGHHHHC-CCSCCEEEECS
T ss_pred chhccCc-----eeECCeEEeCH--------HHHHHHHHHcCCCEEEEec
Confidence 32 1111 01268999842 13556665 799998874
No 168
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A
Probab=36.43 E-value=97 Score=27.80 Aligned_cols=115 Identities=18% Similarity=0.195 Sum_probs=67.9
Q ss_pred HHHHHHhcCCCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCCCCCCCCC--
Q 024060 114 EELLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG-- 191 (273)
Q Consensus 114 ~~~~~~l~~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~-- 191 (273)
.++.++++++|+|+++- |+ +-.-++++..+.++..+.+.+=+.-| ||.
T Consensus 185 ~~l~ell~~aDiV~l~~-----Pl--------------------t~~t~~li~~~~l~~mk~gailIN~a-----RG~~v 234 (315)
T 3pp8_A 185 EELRAFLNQTRVLINLL-----PN--------------------TAQTVGIINSELLDQLPDGAYVLNLA-----RGVHV 234 (315)
T ss_dssp HHHHHHHHTCSEEEECC-----CC--------------------CGGGTTCBSHHHHTTSCTTEEEEECS-----CGGGB
T ss_pred CCHHHHHhhCCEEEEec-----CC--------------------chhhhhhccHHHHhhCCCCCEEEECC-----CChhh
Confidence 45666777999998763 21 11123478888888888776555554 563
Q ss_pred --hHHHHHHHhCCCEeEEEEEEecCc-cCC-CCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCce
Q 024060 192 --KPAKQAFDAGVKLIGATSHFVTEE-LDA-GPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVL 263 (273)
Q Consensus 192 --~p~~~ai~~G~~~~GvT~H~~~~~-~D~-G~Ii~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~i~~l~~g~~~ 263 (273)
..+..|+.+|. ..|+-+=..+.+ +.. -+.+....+-+.|+-...+..++ ..+.+.+.+..+.+|+..
T Consensus 235 d~~aL~~aL~~g~-i~gA~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~~~----~~~~~~~ni~~~~~G~~~ 305 (315)
T 3pp8_A 235 QEADLLAALDSGK-LKGAMLDVFSQEPLPQESPLWRHPRVAMTPHIAAVTRPAE----AIDYISRTITQLEKGEPV 305 (315)
T ss_dssp CHHHHHHHHHHTS-EEEEEESCCSSSSCCTTCGGGGCTTEEECSSCSSCCCHHH----HHHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHhCC-ccEEEcCCCCCCCCCCCChhhcCCCEEECCCCCcccHHHH----HHHHHHHHHHHHHcCCCC
Confidence 46777888885 455544444433 222 24444445556665433332222 355667778888888754
No 169
>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}
Probab=36.13 E-value=25 Score=32.99 Aligned_cols=23 Identities=17% Similarity=0.335 Sum_probs=16.8
Q ss_pred CCCCceEEEEEECC-chhHHHHHH
Q 024060 43 IDPKYKVAVLASKQ-EHCLVDFLY 65 (273)
Q Consensus 43 ~~~~~kiav~~Sg~-g~~l~~ll~ 65 (273)
.+++.||+|+|+|. |+.|..++.
T Consensus 31 ~~~p~KI~ViGaGsWGTALA~~la 54 (391)
T 4fgw_A 31 AEKPFKVTVIGSGNWGTTIAKVVA 54 (391)
T ss_dssp --CCEEEEEECCSHHHHHHHHHHH
T ss_pred cCCCCeEEEECcCHHHHHHHHHHH
Confidence 34568999999996 788776664
No 170
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA binding protein/structural protein complex; HET: EPE; 1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1 PDB: 1ra4_A* 1sds_A 3paf_A
Probab=35.94 E-value=48 Score=25.59 Aligned_cols=59 Identities=15% Similarity=0.314 Sum_probs=33.2
Q ss_pred EEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCC-CcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhc
Q 024060 52 LASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGP-NSHVIRFLERHGIPYHYLCAKENEREEELLELVQ 121 (273)
Q Consensus 52 ~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~-~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~ 121 (273)
+.+|.-....+ +++|+ +.++.+-.+-+... -..+..+|+++|||++.+.. .+++-.++.
T Consensus 30 l~~G~~~v~ka----i~~gk--a~lViiA~D~~p~~~~~~l~~lc~~~~VP~~~v~s-----k~eLG~a~G 89 (120)
T 1xbi_A 30 IKKGANEVTKA----VERGI--AKLVIIAEDVKPEEVVAHLPYLCEEKGIPYAYVAS-----KQDLGKAAG 89 (120)
T ss_dssp EEESHHHHHHH----HHHTC--CSEEEEESCCSSGGGTTTHHHHHHHHTCCEEEESC-----HHHHHHHTT
T ss_pred ccccHHHHHHH----HHcCC--ceEEEEcCCCChHHHHHHHHHHHHhcCCCEEEeCC-----HHHHHHHhC
Confidence 55554444444 34453 45543333332211 35688999999999987753 245666664
No 171
>2fc3_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich, ribosome, RNA binding protein; 1.56A {Aeropyrum pernix} SCOP: d.79.3.1 PDB: 3pla_C* 3id5_C* 3hax_D* 2hvy_D* 3hay_D* 3nvi_B 3nmu_C 3nvk_E* 3lwr_C 3lwo_C* 3lwq_C* 3lwp_C 3lwv_C 3hjw_C* 2czw_A 1pxw_A
Probab=35.61 E-value=58 Score=25.20 Aligned_cols=59 Identities=15% Similarity=0.246 Sum_probs=32.9
Q ss_pred EEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCC-CcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhc
Q 024060 52 LASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGP-NSHVIRFLERHGIPYHYLCAKENEREEELLELVQ 121 (273)
Q Consensus 52 ~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~-~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~ 121 (273)
+.+|.... .+++++|+ +.++.+-.+-+... -..+..+|+++|||++.+.. .+++-.++.
T Consensus 29 l~~G~~~v----~kal~~gk--a~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~v~s-----k~eLG~a~G 88 (124)
T 2fc3_A 29 IKKGTNET----TKAVERGL--AKLVVIAEDVDPPEIVMHLPLLCDEKKIPYVYVPS-----KKRLGEAAG 88 (124)
T ss_dssp EEESHHHH----HHHHHTTC--CSEEEEETTCSSGGGTTTHHHHHHHTTCCEEEESC-----HHHHHHHTT
T ss_pred ccCCHHHH----HHHHHcCC--ceEEEEcCCCChHHHHHHHHHHHHHcCCCEEEECC-----HHHHHHHhC
Confidence 45553333 34444554 45543333332211 35688999999999987753 245666664
No 172
>3t38_A Arsenate reductase; low molecular weight tyrosine phosphatase fold, reduction of to arsenite, oxidoreductase; 2.20A {Corynebacterium glutamicum}
Probab=35.15 E-value=1.4e+02 Score=25.39 Aligned_cols=81 Identities=14% Similarity=0.212 Sum_probs=46.3
Q ss_pred CCCCceEEEEEECCc--hhH-HHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHH
Q 024060 43 IDPKYKVAVLASKQE--HCL-VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLEL 119 (273)
Q Consensus 43 ~~~~~kiav~~Sg~g--~~l-~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~ 119 (273)
...++||.|+.+|+. |.+ ++++.....+. .++.--=+.+..+.+....+.++++||++.....+ ...++.
T Consensus 78 ~~~~~~VLFVCtgN~cRSpmAEal~~~~~~~~--~~v~SAGt~~g~~~dp~a~~vl~e~Gidis~~~sr-~l~~~~---- 150 (213)
T 3t38_A 78 ASPVPQVLFICVHNAGRSQIASALLSHYAGSS--VEVRSAGSLPASEIHPLVLEILSERGVNISDAFPK-PLTDDV---- 150 (213)
T ss_dssp SSCCCEEEEEESSSSSHHHHHHHHHHHHHGGG--CEEEEEESSCCSSCCHHHHHHHHHTTCCCTTCCCC-BCCHHH----
T ss_pred cCCCCEEEEECCCchhHHHHHHHHHHHhccCc--eEEEecccCCCCCCCHHHHHHHHHcCCCcccCcCC-cCCHHH----
Confidence 445789999998874 444 45666544333 33322223333345667889999999987421111 122221
Q ss_pred hcCCCEEEEEe
Q 024060 120 VQNTDFLVLAR 130 (273)
Q Consensus 120 l~~~Dlvv~ag 130 (273)
+.++|+|+..+
T Consensus 151 ~~~~DlIitMd 161 (213)
T 3t38_A 151 IRASDYVITMG 161 (213)
T ss_dssp HHHCSEEEESS
T ss_pred hccCCEEEEec
Confidence 23689998654
No 173
>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5
Probab=34.91 E-value=21 Score=31.48 Aligned_cols=49 Identities=10% Similarity=0.135 Sum_probs=27.9
Q ss_pred CceEEEEEECC-chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCE
Q 024060 46 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPY 102 (273)
Q Consensus 46 ~~kiav~~Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~ 102 (273)
++||+|+|.|. |.. .++..+... ...+++ +++++ .....++++++|++.
T Consensus 2 ~~~igiIG~G~ig~~--~~~~~l~~~-~~~~l~--v~d~~---~~~~~~~a~~~g~~~ 51 (323)
T 1xea_A 2 SLKIAMIGLGDIAQK--AYLPVLAQW-PDIELV--LCTRN---PKVLGTLATRYRVSA 51 (323)
T ss_dssp CEEEEEECCCHHHHH--THHHHHTTS-TTEEEE--EECSC---HHHHHHHHHHTTCCC
T ss_pred CcEEEEECCCHHHHH--HHHHHHHhC-CCceEE--EEeCC---HHHHHHHHHHcCCCc
Confidence 47999999875 221 122222221 136776 45542 234567888899884
No 174
>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}
Probab=34.68 E-value=59 Score=28.72 Aligned_cols=65 Identities=15% Similarity=0.136 Sum_probs=35.1
Q ss_pred CCceEEEEEECC-chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCC
Q 024060 45 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 123 (273)
Q Consensus 45 ~~~kiav~~Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~ 123 (273)
.++||+|+|.|. |..+...+.. .| ++|. +.+++ ..-.+.+.+.|+... . .+.+.++++
T Consensus 30 ~~~~I~iIG~G~mG~~~a~~l~~--~G---~~V~--~~dr~----~~~~~~l~~~g~~~~--~--------~~~e~~~~a 88 (320)
T 4dll_A 30 YARKITFLGTGSMGLPMARRLCE--AG---YALQ--VWNRT----PARAASLAALGATIH--E--------QARAAARDA 88 (320)
T ss_dssp CCSEEEEECCTTTHHHHHHHHHH--TT---CEEE--EECSC----HHHHHHHHTTTCEEE--S--------SHHHHHTTC
T ss_pred CCCEEEEECccHHHHHHHHHHHh--CC---CeEE--EEcCC----HHHHHHHHHCCCEee--C--------CHHHHHhcC
Confidence 457999999987 5555443322 23 5653 34542 122333444576332 1 123445689
Q ss_pred CEEEEEe
Q 024060 124 DFLVLAR 130 (273)
Q Consensus 124 Dlvv~ag 130 (273)
|+|+++-
T Consensus 89 DvVi~~v 95 (320)
T 4dll_A 89 DIVVSML 95 (320)
T ss_dssp SEEEECC
T ss_pred CEEEEEC
Confidence 9998764
No 175
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=34.35 E-value=36 Score=25.22 Aligned_cols=17 Identities=12% Similarity=0.235 Sum_probs=13.9
Q ss_pred cHHHHHHHHcCCCEEEE
Q 024060 89 SHVIRFLERHGIPYHYL 105 (273)
Q Consensus 89 ~~~~~~a~~~gIp~~~~ 105 (273)
..+..+|++++||++.+
T Consensus 47 ~~i~~~c~~~~ip~~~~ 63 (99)
T 3j21_Z 47 DDIYYYAKLSDIPVYEF 63 (99)
T ss_dssp HHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHcCCCEEEe
Confidence 45678899999998766
No 176
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=34.31 E-value=75 Score=27.02 Aligned_cols=41 Identities=10% Similarity=0.066 Sum_probs=26.2
Q ss_pred HHHHHHHcCCC-E-EEEcCCCCchHHHHHHHhc--CCCEEEEEeecC
Q 024060 91 VIRFLERHGIP-Y-HYLCAKENEREEELLELVQ--NTDFLVLARYMQ 133 (273)
Q Consensus 91 ~~~~a~~~gIp-~-~~~~~~~~~~~~~~~~~l~--~~Dlvv~ag~~~ 133 (273)
+.++++++|++ + ..+. . ..-.+++.+..+ ++|++|+..+++
T Consensus 204 l~~~~~~~g~~~~~~~v~-~-g~~~~~I~~~a~~~~~dLiVmG~~g~ 248 (290)
T 3mt0_A 204 CRTFQAEYGFSDEQLHIE-E-GPADVLIPRTAQKLDAVVTVIGTVAR 248 (290)
T ss_dssp HHHHHHHHTCCTTTEEEE-E-SCHHHHHHHHHHHHTCSEEEEECCSS
T ss_pred HHHHHHHcCCCcceEEEe-c-cCHHHHHHHHHHhcCCCEEEECCCCC
Confidence 44577788985 2 1111 1 233566777765 799999988776
No 177
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=34.19 E-value=59 Score=25.51 Aligned_cols=49 Identities=16% Similarity=0.238 Sum_probs=28.7
Q ss_pred EEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCCC--cHHHHHHHHcCCCEEEEcC
Q 024060 52 LASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPN--SHVIRFLERHGIPYHYLCA 107 (273)
Q Consensus 52 ~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~--~~~~~~a~~~gIp~~~~~~ 107 (273)
+.+|.-..+.++ ++|+ +.++.+-.+-+ +.+ ..+..+|+++|||++.++.
T Consensus 25 l~~G~~~v~Kai----~~gk--a~LViiA~D~~-p~~~~~~i~~lc~~~~Ip~~~v~s 75 (126)
T 2xzm_U 25 ISKGLHEVLRTI----EAKQ--ALFVCVAEDCD-QGNYVKLVKALCAKNEIKYVSVPK 75 (126)
T ss_dssp EEESHHHHHHHH----HHTC--CSEEEEESSCC-STTHHHHHHHHHHHTTCCEEEESC
T ss_pred EeecHHHHHHHH----HcCC--ceEEEEeCCCC-hHHHHHHHHHHHHHhCCCEEEECC
Confidence 445544444444 3353 55543333332 222 4578999999999998874
No 178
>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}
Probab=34.13 E-value=1.9e+02 Score=26.27 Aligned_cols=162 Identities=7% Similarity=0.017 Sum_probs=87.0
Q ss_pred CceEEEEEECC-chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCCC
Q 024060 46 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 124 (273)
Q Consensus 46 ~~kiav~~Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~D 124 (273)
.++|+|+|.|. |..+...+.++ ..+|. +.++. .-.+.+.+.|+.. +. ++.++++++|
T Consensus 160 g~tvGIIGlG~IG~~vA~~l~~~-----G~~V~--~~d~~-----~~~~~~~~~g~~~--~~--------~l~ell~~aD 217 (352)
T 3gg9_A 160 GQTLGIFGYGKIGQLVAGYGRAF-----GMNVL--VWGRE-----NSKERARADGFAV--AE--------SKDALFEQSD 217 (352)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHT-----TCEEE--EECSH-----HHHHHHHHTTCEE--CS--------SHHHHHHHCS
T ss_pred CCEEEEEeECHHHHHHHHHHHhC-----CCEEE--EECCC-----CCHHHHHhcCceE--eC--------CHHHHHhhCC
Confidence 47999999886 55555555542 35553 33431 1235566778732 11 1334556889
Q ss_pred EEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCCCCCCCC----ChHHHHHHHh
Q 024060 125 FLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKG----GKPAKQAFDA 200 (273)
Q Consensus 125 lvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG----~~p~~~ai~~ 200 (273)
+|+++- |+ +-.-+.++..+.++..+.+.+=+.-| || ...+..|+.+
T Consensus 218 iV~l~~-----Pl--------------------t~~t~~li~~~~l~~mk~gailIN~a-----Rg~~vd~~aL~~aL~~ 267 (352)
T 3gg9_A 218 VLSVHL-----RL--------------------NDETRSIITVADLTRMKPTALFVNTS-----RAELVEENGMVTALNR 267 (352)
T ss_dssp EEEECC-----CC--------------------STTTTTCBCHHHHTTSCTTCEEEECS-----CGGGBCTTHHHHHHHH
T ss_pred EEEEec-----cC--------------------cHHHHHhhCHHHHhhCCCCcEEEECC-----CchhhcHHHHHHHHHh
Confidence 998754 21 11123377888888887765555544 45 3577888888
Q ss_pred CCC-EeEEEEEEecCccCCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 024060 201 GVK-LIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELR 261 (273)
Q Consensus 201 G~~-~~GvT~H~~~~~~D~G~Ii~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~i~~l~~g~ 261 (273)
|.- ..|.-++.-++--..-+.+....+-+.|+-...+-. ..+...+.+.+.+..+.+|+
T Consensus 268 g~i~gA~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~e--~~~~~~~~~~~ni~~~~~G~ 327 (352)
T 3gg9_A 268 GRPGMAAIDVFETEPILQGHTLLRMENCICTPHIGYVERE--SYEMYFGIAFQNILDILQGN 327 (352)
T ss_dssp TSSSEEEECCCSSSCCCSCCGGGGCTTEEECCSCTTCBHH--HHHHHHHHHHHHHHHHHTTC
T ss_pred CCccEEEecccCCCCCCCCChhhcCCCEEECCCCCCCCHH--HHHHHHHHHHHHHHHHHcCC
Confidence 862 234444433321122344444455566654222211 11222344555666667774
No 179
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=34.11 E-value=2.1e+02 Score=25.54 Aligned_cols=51 Identities=12% Similarity=0.066 Sum_probs=31.8
Q ss_pred ceEEEEEECCc-h--hHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEc
Q 024060 47 YKVAVLASKQE-H--CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 106 (273)
Q Consensus 47 ~kiav~~Sg~g-~--~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~ 106 (273)
|||++++.+.. + .+..|..++++. .++|. |+|.. ...+..++.|++++.++
T Consensus 1 MrIli~~~gt~Ghv~p~~~La~~L~~~--Gh~V~-v~~~~------~~~~~v~~~g~~~~~l~ 54 (404)
T 3h4t_A 1 MGVLITGCGSRGDTEPLVALAARLREL--GADAR-MCLPP------DYVERCAEVGVPMVPVG 54 (404)
T ss_dssp -CEEEEEESSHHHHHHHHHHHHHHHHT--TCCEE-EEECG------GGHHHHHHTTCCEEECS
T ss_pred CeEEEEeCCCCccHHHHHHHHHHHHHC--CCeEE-EEeCH------HHHHHHHHcCCceeecC
Confidence 68988887763 2 344455554432 36765 44543 24677888999998876
No 180
>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6
Probab=34.03 E-value=53 Score=29.49 Aligned_cols=64 Identities=22% Similarity=0.278 Sum_probs=36.5
Q ss_pred CceEEEEEECC-chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCCC
Q 024060 46 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 124 (273)
Q Consensus 46 ~~kiav~~Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~D 124 (273)
.+||+|+|.|. |+.+...+.. .| ++|. +.+++ .....+.+++.|+.+. + +.+.++++|
T Consensus 16 ~~~I~IIG~G~mG~alA~~L~~--~G---~~V~--~~~~~---~~~~~~~a~~~G~~~~--~---------~~e~~~~aD 74 (338)
T 1np3_A 16 GKKVAIIGYGSQGHAHACNLKD--SG---VDVT--VGLRS---GSATVAKAEAHGLKVA--D---------VKTAVAAAD 74 (338)
T ss_dssp TSCEEEECCSHHHHHHHHHHHH--TT---CCEE--EECCT---TCHHHHHHHHTTCEEE--C---------HHHHHHTCS
T ss_pred CCEEEEECchHHHHHHHHHHHH--Cc---CEEE--EEECC---hHHHHHHHHHCCCEEc--c---------HHHHHhcCC
Confidence 36899999886 4544333322 23 4543 34442 2234577888887432 1 123455899
Q ss_pred EEEEEe
Q 024060 125 FLVLAR 130 (273)
Q Consensus 125 lvv~ag 130 (273)
+|+++-
T Consensus 75 vVilav 80 (338)
T 1np3_A 75 VVMILT 80 (338)
T ss_dssp EEEECS
T ss_pred EEEEeC
Confidence 999874
No 181
>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*
Probab=33.82 E-value=77 Score=29.39 Aligned_cols=51 Identities=12% Similarity=0.169 Sum_probs=29.9
Q ss_pred CCceEEEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCC
Q 024060 45 PKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIP 101 (273)
Q Consensus 45 ~~~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp 101 (273)
.++||+|+|.|.-.. ..++..+... -.+++++|+... .....++++++|++
T Consensus 82 ~~irigiIG~G~~g~-~~~~~~l~~~-~~~~lvav~d~~----~~~~~~~a~~~g~~ 132 (433)
T 1h6d_A 82 RRFGYAIVGLGKYAL-NQILPGFAGC-QHSRIEALVSGN----AEKAKIVAAEYGVD 132 (433)
T ss_dssp CCEEEEEECCSHHHH-HTHHHHTTTC-SSEEEEEEECSC----HHHHHHHHHHTTCC
T ss_pred CceEEEEECCcHHHH-HHHHHHHhhC-CCcEEEEEEcCC----HHHHHHHHHHhCCC
Confidence 357999999865211 1233333321 147888776543 23456788889987
No 182
>2ioj_A Hypothetical protein AF_1212; NYSGXRC, PFAM:DRTGG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Archaeoglobus fulgidus} SCOP: c.98.2.2
Probab=33.77 E-value=40 Score=26.21 Aligned_cols=32 Identities=22% Similarity=0.395 Sum_probs=23.0
Q ss_pred eEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEc
Q 024060 75 EITCVISNHDRGPNSHVIRFLERHGIPYHYLC 106 (273)
Q Consensus 75 ~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~ 106 (273)
++.|+|-.....++..+.+.|+++|||+...+
T Consensus 74 ~~~~iIlt~g~~~~~~i~~~A~~~~ipvl~t~ 105 (139)
T 2ioj_A 74 NVRCLILTGNLEPVQLVLTKAEERGVPVILTG 105 (139)
T ss_dssp TEEEEEEETTCCCCHHHHHHHHHHTCCEEECS
T ss_pred CCcEEEEcCCCCCCHHHHHHHHHCCCeEEEEC
Confidence 45665444444456778999999999999765
No 183
>1vq8_F 50S ribosomal protein L7AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.79.3.1 PDB: 1vq4_F* 1vq5_F* 1vq6_F* 1vq7_F* 1s72_F* 1vq9_F* 1vqk_F* 1vql_F* 1vqm_F* 1vqn_F* 1vqo_F* 1vqp_F* 1yhq_F* 1yi2_F* 1yij_F* 1yit_F* 1yj9_F* 1yjn_F* 1yjw_F* 2otj_F* ...
Probab=33.74 E-value=55 Score=25.11 Aligned_cols=59 Identities=12% Similarity=0.283 Sum_probs=32.8
Q ss_pred EEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCC-CcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhc
Q 024060 52 LASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGP-NSHVIRFLERHGIPYHYLCAKENEREEELLELVQ 121 (273)
Q Consensus 52 ~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~-~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~ 121 (273)
+.+|......+ +++|. +.++.+-++-+... -..+..+|+++|||++.+.+ .+++-.++.
T Consensus 30 l~~G~~~v~ka----l~~gk--a~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~~~s-----k~eLG~a~G 89 (120)
T 1vq8_F 30 VKKGTNETTKS----IERGS--AELVFVAEDVQPEEIVMHIPELADEKGVPFIFVEQ-----QDDLGHAAG 89 (120)
T ss_dssp EEESHHHHHHH----HHHTC--CSEEEEESCCSSGGGTTTHHHHHHTTCCCEEEESC-----HHHHHHHTT
T ss_pred EeECHHHHHHH----HHcCC--ceEEEEeCCCChHHHHHHHHHHHHhcCCCEEEECC-----HHHHHHHhC
Confidence 45554444444 34453 45543333332211 35688999999999987653 245666654
No 184
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1
Probab=33.50 E-value=76 Score=30.12 Aligned_cols=58 Identities=14% Similarity=0.129 Sum_probs=37.7
Q ss_pred CCCceEEEEEECCc--hhHHHHHHhhhcCCCCceEEEEeeCCCCCCC-cHHHHHHHHcCC-CEEEEc
Q 024060 44 DPKYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPN-SHVIRFLERHGI-PYHYLC 106 (273)
Q Consensus 44 ~~~~kiav~~Sg~g--~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~-~~~~~~a~~~gI-p~~~~~ 106 (273)
..+.||+|..||+- +.+..++.. .| .+|++|..+-....+ ..+.+.|++.|| |.++++
T Consensus 12 ~~~~KVVVA~SGGlDSSv~a~~Lke--~G---~eViavt~d~Gq~~Ele~A~~vA~~lGi~~~~VvD 73 (421)
T 1vl2_A 12 HMKEKVVLAYSGGLDTSVILKWLCE--KG---FDVIAYVANVGQKDDFVAIKEKALKTGASKVYVED 73 (421)
T ss_dssp --CCEEEEECCSSHHHHHHHHHHHH--TT---CEEEEEEEESSCCCCHHHHHHHHHHHTCSEEEEEE
T ss_pred cccCCEEEEeCCcHHHHHHHHHHHH--CC---CeEEEEEEEcCCHHHHHHHHHHHHHcCCceEEEEe
Confidence 35689999999973 333344432 23 688888765432222 457889999999 888877
No 185
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=33.34 E-value=1.6e+02 Score=25.21 Aligned_cols=53 Identities=13% Similarity=0.224 Sum_probs=31.0
Q ss_pred ceEEEEEECCchhH---HHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEc
Q 024060 47 YKVAVLASKQEHCL---VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 106 (273)
Q Consensus 47 ~kiav~~Sg~g~~l---~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~ 106 (273)
+||+++..+.|... ..|.+++.+. .++|. |+|..+. .......+.|++++.++
T Consensus 7 mkIl~~~~~~gG~~~~~~~la~~L~~~--G~~V~-v~~~~~~----~~~~~~~~~g~~~~~~~ 62 (364)
T 1f0k_A 7 KRLMVMAGGTGGHVFPGLAVAHHLMAQ--GWQVR-WLGTADR----MEADLVPKHGIEIDFIR 62 (364)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHTT--TCEEE-EEECTTS----THHHHGGGGTCEEEECC
T ss_pred cEEEEEeCCCccchhHHHHHHHHHHHc--CCEEE-EEecCCc----chhhhccccCCceEEec
Confidence 79999986654322 3566665442 37776 4554321 12244556799887665
No 186
>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A
Probab=33.29 E-value=62 Score=29.00 Aligned_cols=65 Identities=11% Similarity=0.083 Sum_probs=34.5
Q ss_pred CCceEEEEEECCc-hh-HHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcC-CCEEEEcCCCCchHHHHHHHhc
Q 024060 45 PKYKVAVLASKQE-HC-LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHG-IPYHYLCAKENEREEELLELVQ 121 (273)
Q Consensus 45 ~~~kiav~~Sg~g-~~-l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~g-Ip~~~~~~~~~~~~~~~~~~l~ 121 (273)
+++||+|+|.|.. .. ....+.. ...+++++|+.... .+.+++++ ++++ .+ +.+++.
T Consensus 4 ~~~rvgiiG~G~~g~~~~~~~l~~----~~~~~l~av~d~~~-------~~~~~~~~~~~~~--~~--------~~~ll~ 62 (358)
T 3gdo_A 4 DTIKVGILGYGLSGSVFHGPLLDV----LDEYQISKIMTSRT-------EEVKRDFPDAEVV--HE--------LEEITN 62 (358)
T ss_dssp TCEEEEEECCSHHHHHTTHHHHTT----CTTEEEEEEECSCH-------HHHHHHCTTSEEE--SS--------THHHHT
T ss_pred CcceEEEEccCHHHHHHHHHHHhh----CCCeEEEEEEcCCH-------HHHHhhCCCCceE--CC--------HHHHhc
Confidence 4589999998863 22 2222222 12478888775431 23556664 3333 21 123343
Q ss_pred --CCCEEEEEe
Q 024060 122 --NTDFLVLAR 130 (273)
Q Consensus 122 --~~Dlvv~ag 130 (273)
++|+|+++.
T Consensus 63 ~~~vD~V~i~t 73 (358)
T 3gdo_A 63 DPAIELVIVTT 73 (358)
T ss_dssp CTTCCEEEECS
T ss_pred CCCCCEEEEcC
Confidence 577777665
No 187
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=33.27 E-value=73 Score=26.58 Aligned_cols=55 Identities=11% Similarity=0.080 Sum_probs=33.5
Q ss_pred ceEEEEEECCc-h-hHHHHHHhhhcCCCCceEEEEeeCCCCCC---CcHHHHHHHHcCCC-EEEEc
Q 024060 47 YKVAVLASKQE-H-CLVDFLYGWQEGKLPVEITCVISNHDRGP---NSHVIRFLERHGIP-YHYLC 106 (273)
Q Consensus 47 ~kiav~~Sg~g-~-~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~---~~~~~~~a~~~gIp-~~~~~ 106 (273)
.|++|+.||+- | .+-.++. +.+ .++.+|..+..... ...+.++|++.||| .+.++
T Consensus 3 ~kvvv~lSGG~DS~~~l~ll~--~~~---~~v~av~~~~g~~~~~e~~~a~~~a~~lgi~~~~vi~ 63 (232)
T 2pg3_A 3 KRAVVVFSGGQDSTTCLIQAL--QDY---DDVHCITFDYGQRHRAEIEVAQELSQKLGAAAHKVLD 63 (232)
T ss_dssp CEEEEECCSSHHHHHHHHHHH--HHC---SEEEEEEEESSSSCHHHHHHHHHHHHHHTCSEEEEEE
T ss_pred CCEEEEecCcHHHHHHHHHHH--HcC---CCEEEEEEECCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 58999999963 3 2333332 223 46777655543211 12467788999999 87765
No 188
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=33.20 E-value=72 Score=28.15 Aligned_cols=73 Identities=18% Similarity=0.291 Sum_probs=43.3
Q ss_pred ceEEEEEECC-----chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhc
Q 024060 47 YKVAVLASKQ-----EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ 121 (273)
Q Consensus 47 ~kiav~~Sg~-----g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~ 121 (273)
|||+|.+-++ |+-++.|.=+ ..+. ++.. +|..... .+.++.|.|+..++. ...+++.+.++
T Consensus 1 mki~ir~Da~~~IG~GHvmRcl~LA---~~l~-~v~F-~~~~~~~------~~~~~~g~~v~~l~~---~d~~~~~~~l~ 66 (282)
T 3hbm_A 1 MKVLFRSDSSSQIGFGHIKRDLVLA---KQYS-DVSF-ACLPLEG------SLIDEIPYPVYELSS---ESIYELINLIK 66 (282)
T ss_dssp CCEEEEECCBTTTBSHHHHHHHHHH---TTCS-SEEE-EECCCTT------CCGGGCCSCEEECSS---SCHHHHHHHHH
T ss_pred CEEEEEEecCCCccccHHHHHHHHH---HHHH-hCEE-EEecCcH------hHHHHCCCeEEEcCc---cCHHHHHHHHH
Confidence 5788888443 5655554322 1222 4544 4544321 123345899887653 23456777776
Q ss_pred --CCCEEEEEeecC
Q 024060 122 --NTDFLVLARYMQ 133 (273)
Q Consensus 122 --~~Dlvv~ag~~~ 133 (273)
++|++|+=+|.-
T Consensus 67 ~~~~d~lIvD~Y~~ 80 (282)
T 3hbm_A 67 EEKFELLIIDHYGI 80 (282)
T ss_dssp HHTCSEEEEECTTC
T ss_pred hCCCCEEEEECCCC
Confidence 899999999975
No 189
>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}
Probab=33.06 E-value=1.3e+02 Score=27.18 Aligned_cols=160 Identities=14% Similarity=0.121 Sum_probs=83.0
Q ss_pred CceEEEEEECC-chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCCC
Q 024060 46 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 124 (273)
Q Consensus 46 ~~kiav~~Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~D 124 (273)
.++|+|+|.|. |..+...+.++ ..+|. +.++.. .. +.+.+.|+.. . ++.++++++|
T Consensus 165 g~tvgIIGlG~IG~~vA~~l~~~-----G~~V~--~~d~~~---~~--~~~~~~g~~~---~--------~l~ell~~aD 221 (335)
T 2g76_A 165 GKTLGILGLGRIGREVATRMQSF-----GMKTI--GYDPII---SP--EVSASFGVQQ---L--------PLEEIWPLCD 221 (335)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTT-----TCEEE--EECSSS---CH--HHHHHTTCEE---C--------CHHHHGGGCS
T ss_pred cCEEEEEeECHHHHHHHHHHHHC-----CCEEE--EECCCc---ch--hhhhhcCcee---C--------CHHHHHhcCC
Confidence 47899999876 55554444432 35653 334321 11 3567778632 1 1334666899
Q ss_pred EEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCCCCCCCCC----hHHHHHHHh
Q 024060 125 FLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG----KPAKQAFDA 200 (273)
Q Consensus 125 lvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~----~p~~~ai~~ 200 (273)
+|+++- |+. -.-+.++..+.++..+.+.+=+--| ||. ..+..|+.+
T Consensus 222 vV~l~~-----P~t--------------------~~t~~li~~~~l~~mk~gailIN~a-----rg~vvd~~aL~~aL~~ 271 (335)
T 2g76_A 222 FITVHT-----PLL--------------------PSTTGLLNDNTFAQCKKGVRVVNCA-----RGGIVDEGALLRALQS 271 (335)
T ss_dssp EEEECC-----CCC--------------------TTTTTSBCHHHHTTSCTTEEEEECS-----CTTSBCHHHHHHHHHH
T ss_pred EEEEec-----CCC--------------------HHHHHhhCHHHHhhCCCCcEEEECC-----CccccCHHHHHHHHHh
Confidence 999763 211 1122377778888877765444434 353 366778887
Q ss_pred CCCEeEEEEEEecCcc-CCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 024060 201 GVKLIGATSHFVTEEL-DAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELR 261 (273)
Q Consensus 201 G~~~~GvT~H~~~~~~-D~G~Ii~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~i~~l~~g~ 261 (273)
|. ..|+-+-+...+- ...+.+....+-+.|.....+... .....+.+.+.+..+.+|+
T Consensus 272 g~-i~gA~lDV~~~EP~~~~~L~~~~nvilTPH~~~~t~e~--~~~~~~~~~~nl~~~~~g~ 330 (335)
T 2g76_A 272 GQ-CAGAALDVFTEEPPRDRALVDHENVISCPHLGASTKEA--QSRCGEEIAVQFVDMVKGK 330 (335)
T ss_dssp TS-EEEEEESCCSSSSCSCCHHHHSTTEEECSSCTTCBHHH--HHHHHHHHHHHHHHHC---
T ss_pred CC-ccEEEEeecCCCCCCCchHHhCCCEEECCcCCCCCHHH--HHHHHHHHHHHHHHHHcCC
Confidence 75 5555555544432 223444444555666543322221 1222344455555666664
No 190
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=32.86 E-value=1e+02 Score=26.89 Aligned_cols=52 Identities=8% Similarity=0.017 Sum_probs=32.0
Q ss_pred CceEEEEEECC-ch--hHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEc
Q 024060 46 KYKVAVLASKQ-EH--CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 106 (273)
Q Consensus 46 ~~kiav~~Sg~-g~--~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~ 106 (273)
|+||+++..+. |+ .+..|.+++.+. .++|+ ++|.. ...+..++.|+++..++
T Consensus 4 M~~il~~~~~~~Ghv~~~~~La~~L~~~--GheV~-v~~~~------~~~~~~~~~G~~~~~~~ 58 (402)
T 3ia7_A 4 QRHILFANVQGHGHVYPSLGLVSELARR--GHRIT-YVTTP------LFADEVKAAGAEVVLYK 58 (402)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHHHT--TCEEE-EEECH------HHHHHHHHTTCEEEECC
T ss_pred CCEEEEEeCCCCcccccHHHHHHHHHhC--CCEEE-EEcCH------HHHHHHHHcCCEEEecc
Confidence 45998887664 33 234455554432 37876 44432 24667788999988776
No 191
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}
Probab=32.55 E-value=2.4e+02 Score=24.30 Aligned_cols=91 Identities=11% Similarity=0.158 Sum_probs=49.7
Q ss_pred CCceEEEEEECC-chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCC
Q 024060 45 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 123 (273)
Q Consensus 45 ~~~kiav~~Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~ 123 (273)
+.++|+|+|.|. |..+...+.+. | ++|. +.++. ..-.+.+.+.|+.+... +++.+.++++
T Consensus 154 ~g~~v~IiG~G~iG~~~a~~l~~~--G---~~V~--~~dr~----~~~~~~~~~~g~~~~~~--------~~l~~~l~~a 214 (293)
T 3d4o_A 154 HGANVAVLGLGRVGMSVARKFAAL--G---AKVK--VGARE----SDLLARIAEMGMEPFHI--------SKAAQELRDV 214 (293)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHT--T---CEEE--EEESS----HHHHHHHHHTTSEEEEG--------GGHHHHTTTC
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhC--C---CEEE--EEECC----HHHHHHHHHCCCeecCh--------hhHHHHhcCC
Confidence 347999999875 33333333332 3 4543 34442 11123445677643211 1244556789
Q ss_pred CEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCC
Q 024060 124 DFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGL 184 (273)
Q Consensus 124 Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpsl 184 (273)
|+|+++-=.+ ++..+.++..+.+.+=+.-|-
T Consensus 215 DvVi~~~p~~------------------------------~i~~~~l~~mk~~~~lin~ar 245 (293)
T 3d4o_A 215 DVCINTIPAL------------------------------VVTANVLAEMPSHTFVIDLAS 245 (293)
T ss_dssp SEEEECCSSC------------------------------CBCHHHHHHSCTTCEEEECSS
T ss_pred CEEEECCChH------------------------------HhCHHHHHhcCCCCEEEEecC
Confidence 9999874222 777788887766644444443
No 192
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=32.39 E-value=28 Score=25.92 Aligned_cols=28 Identities=11% Similarity=0.080 Sum_probs=19.6
Q ss_pred cHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhc
Q 024060 89 SHVIRFLERHGIPYHYLCAKENEREEELLELVQ 121 (273)
Q Consensus 89 ~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~ 121 (273)
..+..+|+.++||++.+.+ .+++-..+-
T Consensus 50 ~~i~~~c~~~~ip~~~~~s-----~~eLG~a~G 77 (101)
T 3on1_A 50 KKLLDKCGSYQIPVKVVGN-----RQMLGRAIG 77 (101)
T ss_dssp HHHHHHHHHHTCCEEEESC-----HHHHHHHTT
T ss_pred HHHHHHHHHcCCCEEEeCC-----HHHHHHHhC
Confidence 3467789999999988653 245665654
No 193
>4egs_A Ribose 5-phosphate isomerase RPIB; tyrosine phosphatase, dephosphorylation, hydrolase; 2.30A {Thermoanaerobacter tengcongensis}
Probab=32.37 E-value=49 Score=27.37 Aligned_cols=84 Identities=13% Similarity=0.122 Sum_probs=40.8
Q ss_pred CCCCceEEEEEECCc--hhH-HHHHHhhhcC-CCCceEEEEee--CCCCCCCcHHHH-HHHHcCCCEEEEcCCCCchHHH
Q 024060 43 IDPKYKVAVLASKQE--HCL-VDFLYGWQEG-KLPVEITCVIS--NHDRGPNSHVIR-FLERHGIPYHYLCAKENEREEE 115 (273)
Q Consensus 43 ~~~~~kiav~~Sg~g--~~l-~~ll~~~~~~-~l~~~i~~Vvs--~~~~~~~~~~~~-~a~~~gIp~~~~~~~~~~~~~~ 115 (273)
...++||.|+.+|+. |.+ ++++.....+ ....+|.--=+ ....+.+....+ .++++||++.....+ ....+.
T Consensus 31 ~~~~mkVLFVC~GNiCRSpmAE~l~r~~~~~~g~~~~v~SAGt~~~~g~~~~~~a~~~l~~e~Gidis~h~sr-~l~~~d 109 (180)
T 4egs_A 31 GRGSMRVLFVCTGNTCRSPMAEGIFNAKSKALGKDWEAKSAGVFAPEGFPASSEAVEVLKKEYGIDISDHRAK-SLREED 109 (180)
T ss_dssp ---CCEEEEEESSSSSHHHHHHHHHHHHHHHTTCCCEEEEEETTCCTTCCCCHHHHHHHHHHHCCCCTTCCCC-BCCSHH
T ss_pred CCCCeEEEEEeCCCcccCHHHHHHHHHHHHhcCCceEEEEeeecCcCCCCCChHHHHHHHHHcCcCcccCccc-ccChhh
Confidence 446799999999985 544 4465543221 11344432222 221222333333 457899997422111 122222
Q ss_pred HHHHhcCCCEEEEEee
Q 024060 116 LLELVQNTDFLVLARY 131 (273)
Q Consensus 116 ~~~~l~~~Dlvv~ag~ 131 (273)
++++|+||...-
T Consensus 110 ----~~~~DlIi~Md~ 121 (180)
T 4egs_A 110 ----LKGADLVLAMAF 121 (180)
T ss_dssp ----HHHCSEEEESSH
T ss_pred ----CcCCCEEEEcCH
Confidence 236899997653
No 194
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=32.21 E-value=1e+02 Score=23.65 Aligned_cols=73 Identities=8% Similarity=0.003 Sum_probs=35.2
Q ss_pred CceEEEEEECC-chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHH--HcCCCEEEEcCCCCchHHHHHHH-hc
Q 024060 46 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLE--RHGIPYHYLCAKENEREEELLEL-VQ 121 (273)
Q Consensus 46 ~~kiav~~Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~--~~gIp~~~~~~~~~~~~~~~~~~-l~ 121 (273)
+.+|.|+|.|. |..+...|.. .| ++++++-.+.. .......+ ..|+.+...+. .+.+.+.+. ++
T Consensus 3 ~~~vlI~G~G~vG~~la~~L~~--~g---~~V~vid~~~~----~~~~~~~~~~~~~~~~i~gd~---~~~~~l~~a~i~ 70 (153)
T 1id1_A 3 KDHFIVCGHSILAINTILQLNQ--RG---QNVTVISNLPE----DDIKQLEQRLGDNADVIPGDS---NDSSVLKKAGID 70 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHH--TT---CCEEEEECCCH----HHHHHHHHHHCTTCEEEESCT---TSHHHHHHHTTT
T ss_pred CCcEEEECCCHHHHHHHHHHHH--CC---CCEEEEECCCh----HHHHHHHHhhcCCCeEEEcCC---CCHHHHHHcChh
Confidence 36788888654 3444333322 23 56654432210 11122222 34787765431 222333333 45
Q ss_pred CCCEEEEEe
Q 024060 122 NTDFLVLAR 130 (273)
Q Consensus 122 ~~Dlvv~ag 130 (273)
++|.++++-
T Consensus 71 ~ad~vi~~~ 79 (153)
T 1id1_A 71 RCRAILALS 79 (153)
T ss_dssp TCSEEEECS
T ss_pred hCCEEEEec
Confidence 899888663
No 195
>3n8i_A Low molecular weight phosphotyrosine protein PHOS; tyrosine phosphatase, hydrolase, protein-ligand complex; HET: NLA; 1.50A {Homo sapiens} SCOP: c.44.1.1 PDB: 5pnt_A* 1xww_A 1bvh_A 1dg9_A* 1phr_A 1pnt_A 1z12_A 1z13_A 1c0e_A 2p4u_A
Probab=31.94 E-value=94 Score=24.97 Aligned_cols=82 Identities=11% Similarity=0.155 Sum_probs=44.4
Q ss_pred CCceEEEEEECCc--hhH-HHHHHhhhc-CCCC--ceEEEEeeCC---CCCCCcHHHHHHHHcCCCEEEEcCCCCchHHH
Q 024060 45 PKYKVAVLASKQE--HCL-VDFLYGWQE-GKLP--VEITCVISNH---DRGPNSHVIRFLERHGIPYHYLCAKENEREEE 115 (273)
Q Consensus 45 ~~~kiav~~Sg~g--~~l-~~ll~~~~~-~~l~--~~i~~Vvs~~---~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~ 115 (273)
.++||.|+.+|+. |.+ ++++..... ..+. .+|.--=|.. ..+.+....+.++++||++ ... ......+.
T Consensus 4 ~~~~vLFVC~gN~cRSpmAE~~~~~~~~~~gl~~~~~v~SAGt~~~~~G~~~~~~a~~~l~~~Gid~-~~~-ar~l~~~~ 81 (157)
T 3n8i_A 4 ATKSVLFVCLGNICRSPIAEAVFRKLVTDQNISENWRVDSAATSGYEIGNPPDYRGQSCMKRHGIPM-SHV-ARQITKED 81 (157)
T ss_dssp CCEEEEEEESSSSSHHHHHHHHHHHHHHHTTCGGGEEEEEEESSSTTTTCCCCHHHHHHHHHTTCCC-CCC-CCBCCHHH
T ss_pred CCCEEEEECCCchhHHHHHHHHHHHHHHHcCCCCcEEEEeeecCccccCCCCCHHHHHHHHHcCcCC-CCc-eeECCHHH
Confidence 3589999998874 444 445554321 1121 3332222222 2234566889999999997 321 11222222
Q ss_pred HHHHhcCCCEEEEEeec
Q 024060 116 LLELVQNTDFLVLARYM 132 (273)
Q Consensus 116 ~~~~l~~~Dlvv~ag~~ 132 (273)
+.++|+|+...-.
T Consensus 82 ----~~~~DlIi~M~~~ 94 (157)
T 3n8i_A 82 ----FATFDYILCMDES 94 (157)
T ss_dssp ----HHHCSEEEESSHH
T ss_pred ----cCCCCEEEEeCcH
Confidence 2368999976543
No 196
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*
Probab=31.72 E-value=1.5e+02 Score=25.28 Aligned_cols=73 Identities=14% Similarity=0.143 Sum_probs=38.2
Q ss_pred ceEEEEE-ECC-chh-HHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCC
Q 024060 47 YKVAVLA-SKQ-EHC-LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 123 (273)
Q Consensus 47 ~kiav~~-Sg~-g~~-l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~ 123 (273)
+||+|.| ||. |.. .+.|++. | ++|.++.-+.. ............|+.+...+- .+.+.+.+.++++
T Consensus 12 ~~ilVtGatG~iG~~l~~~L~~~---g---~~V~~l~R~~~--~~~~~~~~l~~~~v~~v~~Dl---~d~~~l~~a~~~~ 80 (318)
T 2r6j_A 12 SKILIFGGTGYIGNHMVKGSLKL---G---HPTYVFTRPNS--SKTTLLDEFQSLGAIIVKGEL---DEHEKLVELMKKV 80 (318)
T ss_dssp CCEEEETTTSTTHHHHHHHHHHT---T---CCEEEEECTTC--SCHHHHHHHHHTTCEEEECCT---TCHHHHHHHHTTC
T ss_pred CeEEEECCCchHHHHHHHHHHHC---C---CcEEEEECCCC--chhhHHHHhhcCCCEEEEecC---CCHHHHHHHHcCC
Confidence 4777777 333 443 3445543 3 56665443321 112222222456777766542 1235677777789
Q ss_pred CEEEEEe
Q 024060 124 DFLVLAR 130 (273)
Q Consensus 124 Dlvv~ag 130 (273)
|.||.+.
T Consensus 81 d~vi~~a 87 (318)
T 2r6j_A 81 DVVISAL 87 (318)
T ss_dssp SEEEECC
T ss_pred CEEEECC
Confidence 9887654
No 197
>3o85_A Ribosomal protein L7AE; alpha beta sandwich fold, K-turn RNA binding protein, KINK T ribosomal protein; 1.81A {Giardia lamblia}
Probab=31.55 E-value=58 Score=25.30 Aligned_cols=85 Identities=21% Similarity=0.335 Sum_probs=44.9
Q ss_pred CCCCCCh--HhHHHHHHHHHHHhcccccccccCCCCCCceEEEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCC-
Q 024060 11 DPIKWPR--EQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGP- 87 (273)
Q Consensus 11 ~~~~~~~--~~l~~~f~~l~~~~~~~~~~~r~~~~~~~~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~- 87 (273)
.++.+|+ ..|.+.+-.+-. . +++ . .| +.+|.-... +++++|+ +.++.+-.+-+...
T Consensus 4 ~~~a~p~a~~~l~~kil~~L~-l-A~k-------a---gk---lv~G~~~v~----kai~~gk--a~lViiA~D~~p~~~ 62 (122)
T 3o85_A 4 DPRAIPFANEELSLELLNLVK-H-GAS-------L---QA---IKRGANEAL----KQVNRGK--AELVIIAADADPIEI 62 (122)
T ss_dssp CTTSCSBCCHHHHHHHHHHHH-H-HHH-------T---TC---EEESHHHHH----HHHHTTC--CSEEEEETTCSSGGG
T ss_pred CCccCCCCCHHHHHHHHHHHH-H-HHH-------h---CC---EeEcHHHHH----HHHHcCC--ceEEEEeCCCChHHH
Confidence 4566676 566666554443 1 122 1 12 555543444 3444454 55543333332111
Q ss_pred CcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhc
Q 024060 88 NSHVIRFLERHGIPYHYLCAKENEREEELLELVQ 121 (273)
Q Consensus 88 ~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~ 121 (273)
-..+..+|+++|||++++..+ +++-.++-
T Consensus 63 ~~~l~~lc~~~~VP~~~v~sk-----~eLG~a~G 91 (122)
T 3o85_A 63 VLHLPLACEDKGVPYVFIGSK-----NALGRACN 91 (122)
T ss_dssp GTTHHHHHHTTTCCEEEESCH-----HHHHHHTT
T ss_pred HHHHHHHHHHhCCCEEEECCH-----HHHHHHhC
Confidence 255788999999999887632 45555553
No 198
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=31.38 E-value=1.8e+02 Score=22.44 Aligned_cols=88 Identities=11% Similarity=0.050 Sum_probs=47.0
Q ss_pred CCCceEEEEEECCchhHHHHHHhhhc-CCCCceEEEE--eeCC-CCC-C---------------C-----cHHHHHHHHc
Q 024060 44 DPKYKVAVLASKQEHCLVDFLYGWQE-GKLPVEITCV--ISNH-DRG-P---------------N-----SHVIRFLERH 98 (273)
Q Consensus 44 ~~~~kiav~~Sg~g~~l~~ll~~~~~-~~l~~~i~~V--vs~~-~~~-~---------------~-----~~~~~~a~~~ 98 (273)
.+..||.|-+.++..+..++-.+..- . .++++..| .... ... . . ....+.+++.
T Consensus 15 ~~~~~ILv~vD~s~~s~~al~~A~~lA~-~~a~l~ll~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 93 (163)
T 1tq8_A 15 SAYKTVVVGTDGSDSSMRAVDRAAQIAG-ADAKLIIASAYLPQHEDARAADILKDESYKVTGTAPIYEILHDAKERAHNA 93 (163)
T ss_dssp CCCCEEEEECCSSHHHHHHHHHHHHHHT-TTSEEEEEEECCC--------------------CCTHHHHHHHHHHHHHTT
T ss_pred ccCCEEEEEcCCCHHHHHHHHHHHHHhC-CCCEEEEEEeeeccCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34578888887766554444332111 2 35777766 2211 110 0 0 1123445667
Q ss_pred CCC-EEEEcCCCCchHHHHHHHhc--CCCEEEEEeecC
Q 024060 99 GIP-YHYLCAKENEREEELLELVQ--NTDFLVLARYMQ 133 (273)
Q Consensus 99 gIp-~~~~~~~~~~~~~~~~~~l~--~~Dlvv~ag~~~ 133 (273)
|++ +...-.. ....+++.+..+ ++|+||+...++
T Consensus 94 gv~~v~~~v~~-G~~~~~I~~~a~~~~~DLIV~G~~g~ 130 (163)
T 1tq8_A 94 GAKNVEERPIV-GAPVDALVNLADEEKADLLVVGNVGL 130 (163)
T ss_dssp TCCEEEEEEEC-SSHHHHHHHHHHHTTCSEEEEECCCC
T ss_pred CCCeEEEEEec-CCHHHHHHHHHHhcCCCEEEECCCCC
Confidence 898 5432222 233567777765 899999877655
No 199
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}
Probab=31.29 E-value=84 Score=28.44 Aligned_cols=115 Identities=11% Similarity=0.102 Sum_probs=65.1
Q ss_pred HHHHHhcCCCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCCCCCCCCC---
Q 024060 115 ELLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG--- 191 (273)
Q Consensus 115 ~~~~~l~~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~--- 191 (273)
++.++++++|+|+++--.- -.-+.++..+.++..+.+.+=+--| ||.
T Consensus 187 ~l~ell~~aDvV~l~lPlt-------------------------~~T~~li~~~~l~~mk~gailIN~a-----RG~~vd 236 (324)
T 3hg7_A 187 ALNKMLAQADVIVSVLPAT-------------------------RETHHLFTASRFEHCKPGAILFNVG-----RGNAIN 236 (324)
T ss_dssp GHHHHHHTCSEEEECCCCC-------------------------SSSTTSBCTTTTTCSCTTCEEEECS-----CGGGBC
T ss_pred CHHHHHhhCCEEEEeCCCC-------------------------HHHHHHhHHHHHhcCCCCcEEEECC-----CchhhC
Confidence 4556677999998763211 1122367777777777665555555 674
Q ss_pred -hHHHHHHHhCCC-EeEEEEEEecCccCCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCce
Q 024060 192 -KPAKQAFDAGVK-LIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVL 263 (273)
Q Consensus 192 -~p~~~ai~~G~~-~~GvT~H~~~~~~D~G~Ii~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~i~~l~~g~~~ 263 (273)
..+..|+.+|.- ..|.-++.-++--..-+.+....+-+.|+-...+..++ ..+.+.+.+..+.+|+-.
T Consensus 237 e~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~~~----~~~~~~~nl~~~~~G~~~ 306 (324)
T 3hg7_A 237 EGDLLTALRTGKLGMAVLDVFEQEPLPADSPLWGQPNLIITPHNSAYSFPDD----VAQIFVRNYIRFIDGQPL 306 (324)
T ss_dssp HHHHHHHHHTTSSSEEEESCCSSSSCCTTCTTTTCTTEEECCSCSSCCCHHH----HHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHcCCceEEEeccCCCCCCCCCChhhcCCCEEEeCCCccccHHHH----HHHHHHHHHHHHHcCCCC
Confidence 467778888762 34455554443222334444445556665433332222 345666777778888643
No 200
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=30.77 E-value=36 Score=25.44 Aligned_cols=28 Identities=14% Similarity=0.116 Sum_probs=19.7
Q ss_pred cHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhc
Q 024060 89 SHVIRFLERHGIPYHYLCAKENEREEELLELVQ 121 (273)
Q Consensus 89 ~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~ 121 (273)
..+..+|+.++||++.+.+ .+|+-..+-
T Consensus 51 ~~i~~~c~~~~vp~~~~~s-----~~eLG~A~G 78 (101)
T 3v7q_A 51 KKVTDKCNYYKVPYKKVES-----RAVLGRSIG 78 (101)
T ss_dssp HHHHHHHHHTTCCEEEESC-----HHHHHHHTT
T ss_pred hhhcccccccCCCeeeech-----HHHHHhhhC
Confidence 4467789999999998753 245655553
No 201
>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}
Probab=30.27 E-value=89 Score=27.75 Aligned_cols=69 Identities=16% Similarity=0.121 Sum_probs=0.0
Q ss_pred CCCCCCceEEEEEECC-chh-HHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHH
Q 024060 41 PDIDPKYKVAVLASKQ-EHC-LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLE 118 (273)
Q Consensus 41 ~~~~~~~kiav~~Sg~-g~~-l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~ 118 (273)
+.+.+++||+|+|.|. |.. ....+..... +++++|+... ..+..++++.+-.+-+ +.+
T Consensus 2 ~~M~~~~rvgiiG~G~~g~~~~~~~~~~~~~----~~l~av~d~~-------~~~~~~~~~~~~~~~~---------~~~ 61 (352)
T 3kux_A 2 NAMADKIKVGLLGYGYASKTFHAPLIMGTPG----LELAGVSSSD-------ASKVHADWPAIPVVSD---------PQM 61 (352)
T ss_dssp CTTTCCEEEEEECCSHHHHHTHHHHHHTSTT----EEEEEEECSC-------HHHHHTTCSSCCEESC---------HHH
T ss_pred CcccCCceEEEECCCHHHHHHHHHHHhhCCC----cEEEEEECCC-------HHHHHhhCCCCceECC---------HHH
Q ss_pred Hhc--CCCEEEEE
Q 024060 119 LVQ--NTDFLVLA 129 (273)
Q Consensus 119 ~l~--~~Dlvv~a 129 (273)
++. ++|+|+++
T Consensus 62 ll~~~~vD~V~i~ 74 (352)
T 3kux_A 62 LFNDPSIDLIVIP 74 (352)
T ss_dssp HHHCSSCCEEEEC
T ss_pred HhcCCCCCEEEEe
No 202
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=30.18 E-value=1.4e+02 Score=26.07 Aligned_cols=10 Identities=20% Similarity=0.119 Sum_probs=7.5
Q ss_pred CCCceEEEEE
Q 024060 44 DPKYKVAVLA 53 (273)
Q Consensus 44 ~~~~kiav~~ 53 (273)
.+++|+.|++
T Consensus 6 ~~m~~~~vi~ 15 (304)
T 3s40_A 6 TKFEKVLLIV 15 (304)
T ss_dssp CSCSSEEEEE
T ss_pred CCCCEEEEEE
Confidence 3567888888
No 203
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=29.79 E-value=1.4e+02 Score=26.15 Aligned_cols=51 Identities=14% Similarity=0.167 Sum_probs=30.8
Q ss_pred CceEEEEEECC-ch--hHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEE
Q 024060 46 KYKVAVLASKQ-EH--CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYL 105 (273)
Q Consensus 46 ~~kiav~~Sg~-g~--~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~ 105 (273)
+|||+|++.+. |+ .+..|..++++. .++|.. ++.. ...+..+..|++++.+
T Consensus 1 ~MrIl~~~~~~~gh~~~~~~la~~L~~~--GheV~v-~~~~------~~~~~~~~~g~~~~~~ 54 (391)
T 3tsa_A 1 HMRVLVVPLPYPTHLMAMVPLCWALQAS--GHEVLI-AAPP------ELQATAHGAGLTTAGI 54 (391)
T ss_dssp CCEEEEECCSCHHHHHTTHHHHHHHHHT--TCEEEE-EECH------HHHHHHHHBTCEEEEC
T ss_pred CcEEEEEcCCCcchhhhHHHHHHHHHHC--CCEEEE-ecCh------hhHHHHHhCCCceeee
Confidence 37999888554 33 234455554432 377764 4432 2456677899998876
No 204
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=29.55 E-value=2.7e+02 Score=23.82 Aligned_cols=82 Identities=13% Similarity=0.187 Sum_probs=40.1
Q ss_pred CCceEEEEEECCc--hhHHHHHHhhhcCCCC-ceEEEEeeCCCCCCCcHHHHHHHHcCCCE-EEEcCC-CCch-------
Q 024060 45 PKYKVAVLASKQE--HCLVDFLYGWQEGKLP-VEITCVISNHDRGPNSHVIRFLERHGIPY-HYLCAK-ENER------- 112 (273)
Q Consensus 45 ~~~kiav~~Sg~g--~~l~~ll~~~~~~~l~-~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~-~~~~~~-~~~~------- 112 (273)
++|||++++...+ .....++..+.+. -. +++..+++... .....+..+..|++. ..+... ....
T Consensus 7 ~~mkIl~v~~~~~~~~~~~~l~~~L~~~-~~~~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (375)
T 3beo_A 7 ERLKVMTIFGTRPEAIKMAPLVLELQKH-PEKIESIVTVTAQH---RQMLDQVLSIFGITPDFDLNIMKDRQTLIDITTR 82 (375)
T ss_dssp SCEEEEEEECSHHHHHHHHHHHHHHTTC-TTTEEEEEEECCSS---SHHHHHHHHHHTCCCSEECCCCCTTCCHHHHHHH
T ss_pred cCceEEEEecCcHHHHHHHHHHHHHHhC-CCCCCeEEEEcCCC---HHHHHHHHHHcCCCCccccccCCCcccHHHHHHH
Confidence 4589998874322 1334555555442 12 56665555431 112233445577765 222211 1011
Q ss_pred -HHHHHHHhc--CCCEEEEEe
Q 024060 113 -EEELLELVQ--NTDFLVLAR 130 (273)
Q Consensus 113 -~~~~~~~l~--~~Dlvv~ag 130 (273)
-..+.+.++ ++|+|++.+
T Consensus 83 ~~~~l~~~l~~~~pDvv~~~~ 103 (375)
T 3beo_A 83 GLEGLDKVMKEAKPDIVLVHG 103 (375)
T ss_dssp HHHHHHHHHHHHCCSEEEEET
T ss_pred HHHHHHHHHHHhCCCEEEEeC
Confidence 112445554 899998854
No 205
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1
Probab=28.95 E-value=72 Score=28.54 Aligned_cols=77 Identities=12% Similarity=0.033 Sum_probs=45.3
Q ss_pred CceEEEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHc-------CCCEEEEcCCCCchHHHHHH
Q 024060 46 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERH-------GIPYHYLCAKENEREEELLE 118 (273)
Q Consensus 46 ~~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~-------gIp~~~~~~~~~~~~~~~~~ 118 (273)
..|++++.|| --...++.-..+.| .++.++..+-.......+.+.|+.. +||+++++. -+ +..+
T Consensus 179 ~~kvlvllSG-vDS~vaa~ll~~~G---~~v~~v~~~~~~~~~~~a~~~a~~l~~~~~~~~i~~~vv~~---~~--~~~~ 249 (307)
T 1vbk_A 179 EGRMIGILHD-ELSALAIFLMMKRG---VEVIPVYIGKDDKNLEKVRSLWNLLKRYSYGSKGFLVVAES---FD--RVLK 249 (307)
T ss_dssp TCEEEEECSS-HHHHHHHHHHHHBT---CEEEEEEESCSSHHHHHHHHHHHHHHTTCTTSCCCCEEESS---HH--HHHH
T ss_pred CCcEEEEEeC-CcHHHHHHHHHhCC---CeEEEEEEEECHHHHHHHHHHHHHHhhhccCCCCcEEEeCC---CH--HHHH
Confidence 3699999999 63322322233445 7888888773111113367777776 999998861 11 1113
Q ss_pred Hhc--CCCEEEEEee
Q 024060 119 LVQ--NTDFLVLARY 131 (273)
Q Consensus 119 ~l~--~~Dlvv~ag~ 131 (273)
... ++|.++..-|
T Consensus 250 ~A~~~ga~~I~tG~~ 264 (307)
T 1vbk_A 250 LIRDFGVKGVIKGLR 264 (307)
T ss_dssp HHHHHTCCEEECCCC
T ss_pred HHHHcCCCEEEECcc
Confidence 322 8998876554
No 206
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=28.92 E-value=1.2e+02 Score=23.93 Aligned_cols=81 Identities=19% Similarity=0.247 Sum_probs=46.9
Q ss_pred EEEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCch--HHHHHHHhcCCCEE
Q 024060 49 VAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENER--EEELLELVQNTDFL 126 (273)
Q Consensus 49 iav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~--~~~~~~~l~~~Dlv 126 (273)
|-+..|.....|..+...++.. ...++.+.|+.|......-++--++.|+.+..+..++.-+ -.++.+...+.|++
T Consensus 4 ifvvfssdpeilkeivreikrq--gvrvvllysdqdekrrrerleefekqgvdvrtvedkedfrenireiwerypqldvv 81 (162)
T 2l82_A 4 IFVVFSSDPEILKEIVREIKRQ--GVRVVLLYSDQDEKRRRERLEEFEKQGVDVRTVEDKEDFRENIREIWERYPQLDVV 81 (162)
T ss_dssp EEEEEESCHHHHHHHHHHHHHT--TCEEEEEECCSCHHHHHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHCTTCCEE
T ss_pred EEEEecCCHHHHHHHHHHHHhC--CeEEEEEecCchHHHHHHHHHHHHHcCCceeeeccHHHHHHHHHHHHHhCCCCcEE
Confidence 4444566667788887766654 3788888888753211222333456789888776432111 12333333377888
Q ss_pred EEEee
Q 024060 127 VLARY 131 (273)
Q Consensus 127 v~ag~ 131 (273)
+++.-
T Consensus 82 vivtt 86 (162)
T 2l82_A 82 VIVTT 86 (162)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 87653
No 207
>2o2z_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, NAD-binding protein; HET: NAD; 2.60A {Bacillus halodurans} PDB: 2hzb_A
Probab=28.92 E-value=81 Score=28.86 Aligned_cols=38 Identities=32% Similarity=0.480 Sum_probs=27.0
Q ss_pred CCceEEEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCC
Q 024060 45 PKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRG 86 (273)
Q Consensus 45 ~~~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~ 86 (273)
..+||++|+- |+-+..++...+. ...++++||+--|+.
T Consensus 3 ~~~kiv~lgG--GtGl~~ll~gL~~--~~~~iT~IVtv~DdG 40 (323)
T 2o2z_A 3 KKKNVIVFGG--GTGLSVLLRGLKT--FPVSITAIVTVADDG 40 (323)
T ss_dssp CCEEEEEEEC--SHHHHHHHHHHTT--SSEEEEEEECCCCCS
T ss_pred CCCeEEEECC--cccHHHHHHHHHh--cCCCeEEEEECCcCC
Confidence 3479988884 4555666666543 358999999988875
No 208
>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}
Probab=28.84 E-value=42 Score=29.54 Aligned_cols=67 Identities=16% Similarity=0.153 Sum_probs=35.7
Q ss_pred CCCCceEEEEEECC-chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhc
Q 024060 43 IDPKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ 121 (273)
Q Consensus 43 ~~~~~kiav~~Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~ 121 (273)
...++||+|+|.|. |..+...+.. .| ++|. +.+++. .. .+.+.+.|+... . ...+.++
T Consensus 18 ~~~m~~I~iIG~G~mG~~~A~~l~~--~G---~~V~--~~dr~~---~~-~~~l~~~g~~~~--~--------~~~~~~~ 76 (310)
T 3doj_A 18 GSHMMEVGFLGLGIMGKAMSMNLLK--NG---FKVT--VWNRTL---SK-CDELVEHGASVC--E--------SPAEVIK 76 (310)
T ss_dssp CCCSCEEEEECCSHHHHHHHHHHHH--TT---CEEE--EECSSG---GG-GHHHHHTTCEEC--S--------SHHHHHH
T ss_pred cccCCEEEEECccHHHHHHHHHHHH--CC---CeEE--EEeCCH---HH-HHHHHHCCCeEc--C--------CHHHHHH
Confidence 33568999999886 5555443322 23 4554 345531 22 333446676332 1 1223445
Q ss_pred CCCEEEEEe
Q 024060 122 NTDFLVLAR 130 (273)
Q Consensus 122 ~~Dlvv~ag 130 (273)
++|+|+++-
T Consensus 77 ~aDvvi~~v 85 (310)
T 3doj_A 77 KCKYTIAML 85 (310)
T ss_dssp HCSEEEECC
T ss_pred hCCEEEEEc
Confidence 789998763
No 209
>3au8_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH binding; HET: NDP; 1.86A {Plasmodium falciparum} PDB: 3au9_A* 3aua_A*
Probab=28.81 E-value=1.3e+02 Score=29.08 Aligned_cols=61 Identities=10% Similarity=0.104 Sum_probs=38.2
Q ss_pred CCCCceEEEEEECC--chhHHHHHHhhh-cCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcC
Q 024060 43 IDPKYKVAVLASKQ--EHCLVDFLYGWQ-EGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA 107 (273)
Q Consensus 43 ~~~~~kiav~~Sg~--g~~l~~ll~~~~-~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~ 107 (273)
...|+||+||||.+ |++--+++.... .++ ..+|+++..++. -.-+.+.|++++-.+..+.+
T Consensus 74 ~~~mk~I~ILGSTGSIGtqTLdVi~~~p~~pd-~f~V~aLaAg~N---v~lL~eQ~~ef~P~~v~v~d 137 (488)
T 3au8_A 74 IKKPINVAIFGSTGSIGTNALNIIRECNKIEN-VFNVKALYVNKS---VNELYEQAREFLPEYLCIHD 137 (488)
T ss_dssp ---CEEEEEETTTSHHHHHHHHHHHHHHHHSC-CEEEEEEEESSC---HHHHHHHHHHHCCSEEEESC
T ss_pred hhcceEEEEEccCcHHHHHHHHHHHcccCCCC-eEEEEEEEcCCC---HHHHHHHHHHcCCCEEEEcC
Confidence 34568899999754 444444554421 122 489999988752 23467888899988777653
No 210
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*
Probab=28.76 E-value=3.5e+02 Score=25.80 Aligned_cols=134 Identities=16% Similarity=0.177 Sum_probs=72.6
Q ss_pred CceEEEEEECC-chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCCC
Q 024060 46 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 124 (273)
Q Consensus 46 ~~kiav~~Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~D 124 (273)
.++|+|+|.|. |..+...+.+. ..+|. +.++.. . .+.+.+.|+... + +.+.++++|
T Consensus 142 g~~vgIIG~G~IG~~vA~~l~~~-----G~~V~--~~d~~~---~--~~~a~~~g~~~~--~---------l~e~~~~aD 198 (529)
T 1ygy_A 142 GKTVGVVGLGRIGQLVAQRIAAF-----GAYVV--AYDPYV---S--PARAAQLGIELL--S---------LDDLLARAD 198 (529)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTT-----TCEEE--EECTTS---C--HHHHHHHTCEEC--C---------HHHHHHHCS
T ss_pred CCEEEEEeeCHHHHHHHHHHHhC-----CCEEE--EECCCC---C--hhHHHhcCcEEc--C---------HHHHHhcCC
Confidence 47999999886 45544444332 24553 334421 1 244677786421 1 234555899
Q ss_pred EEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCCCCCCCCC----hHHHHHHHh
Q 024060 125 FLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG----KPAKQAFDA 200 (273)
Q Consensus 125 lvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~----~p~~~ai~~ 200 (273)
+|+++- |+. -.-..++..+.++..+.+.+-+.-| ||. ..+..++.+
T Consensus 199 vV~l~~-----P~~--------------------~~t~~~i~~~~~~~~k~g~ilin~a-----rg~iv~~~aL~~al~~ 248 (529)
T 1ygy_A 199 FISVHL-----PKT--------------------PETAGLIDKEALAKTKPGVIIVNAA-----RGGLVDEAALADAITG 248 (529)
T ss_dssp EEEECC-----CCS--------------------TTTTTCBCHHHHTTSCTTEEEEECS-----CTTSBCHHHHHHHHHT
T ss_pred EEEECC-----CCc--------------------hHHHHHhCHHHHhCCCCCCEEEECC-----CCchhhHHHHHHHHHc
Confidence 999874 211 0122377777777777776666666 663 234566666
Q ss_pred CCCEeEEEEEEecCc-cCCCCeeEEEEEecCCCC
Q 024060 201 GVKLIGATSHFVTEE-LDAGPIIEQMVERVSHRD 233 (273)
Q Consensus 201 G~~~~GvT~H~~~~~-~D~G~Ii~Q~~~~I~~~d 233 (273)
| +..|+-+.+...+ +-..+.+.-..+-+.|+.
T Consensus 249 g-~i~ga~lDv~~~eP~~~~~L~~~~~vilTPh~ 281 (529)
T 1ygy_A 249 G-HVRAAGLDVFATEPCTDSPLFELAQVVVTPHL 281 (529)
T ss_dssp S-SEEEEEESSCSSSSCSCCGGGGCTTEEECSSC
T ss_pred C-CccEEEEeeccCCCCCCchHHhCCCEEEcccc
Confidence 5 4566666555433 222344443445555543
No 211
>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}
Probab=28.61 E-value=95 Score=28.30 Aligned_cols=92 Identities=10% Similarity=0.102 Sum_probs=43.9
Q ss_pred cCChhHHhhcCCCeeEeecCCCCCCCCC----hHHHHHHHhCC-CEeEEEEEEecCccCCCCeeEEEEEecCCCCCHHHH
Q 024060 164 ILSGKFLRSYGKDVINIHHGLLPSFKGG----KPAKQAFDAGV-KLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTF 238 (273)
Q Consensus 164 il~~~~l~~~~~~~iNiHpslLP~yRG~----~p~~~ai~~G~-~~~GvT~H~~~~~~D~G~Ii~Q~~~~I~~~dt~~~L 238 (273)
++..+.++..+.+.+-+--| ||. ..+..|+.+|. ...|.-++.-++..+. +.+....+-+.|+-...+.
T Consensus 239 li~~~~l~~mk~gailIN~a-----RG~vvde~aL~~aL~~g~i~gA~LDVf~~EP~~~~-~L~~~~nvilTPHia~~t~ 312 (340)
T 4dgs_A 239 IVDASLLQALGPEGIVVNVA-----RGNVVDEDALIEALKSGTIAGAGLDVFVNEPAIRS-EFHTTPNTVLMPHQGSATV 312 (340)
T ss_dssp --CHHHHHHTTTTCEEEECS-----CC--------------CCSSEEEESCCSSSSSCCS-HHHHSSSEEECSSCSSCCH
T ss_pred HhhHHHHhcCCCCCEEEECC-----CCcccCHHHHHHHHHcCCceEEEeCCcCCCCCCcc-chhhCCCEEEcCcCCcCCH
Confidence 77888888877664444433 442 34566777775 2345555555554443 5555556667776433332
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCce
Q 024060 239 VQKSEDVEKQCLAKAIKSYCELRVL 263 (273)
Q Consensus 239 ~~rl~~~~~~ll~~~i~~l~~g~~~ 263 (273)
..+ ....+++.+.+..+.+|+-.
T Consensus 313 e~~--~~~~~~~~~nl~~~~~g~~~ 335 (340)
T 4dgs_A 313 ETR--MAMGKLVLANLAAHFAGEKA 335 (340)
T ss_dssp HHH--HHHHHHHHHHHHHHHTTSCC
T ss_pred HHH--HHHHHHHHHHHHHHHcCCCC
Confidence 211 22344556666667777643
No 212
>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}
Probab=27.86 E-value=1.7e+02 Score=26.56 Aligned_cols=114 Identities=15% Similarity=0.120 Sum_probs=64.3
Q ss_pred HHHHhcCCCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCCCCCCCCC----
Q 024060 116 LLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG---- 191 (273)
Q Consensus 116 ~~~~l~~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~---- 191 (273)
+.++++++|+|+++- |+. -.-+.++..+.++..+.+.+=+--| ||.
T Consensus 221 l~ell~~sDvV~l~~-----Plt--------------------~~T~~li~~~~l~~mk~gailIN~a-----RG~~vde 270 (345)
T 4g2n_A 221 LDSLLGASDIFLIAA-----PGR--------------------PELKGFLDHDRIAKIPEGAVVINIS-----RGDLIND 270 (345)
T ss_dssp HHHHHHTCSEEEECS-----CCC--------------------GGGTTCBCHHHHHHSCTTEEEEECS-----CGGGBCH
T ss_pred HHHHHhhCCEEEEec-----CCC--------------------HHHHHHhCHHHHhhCCCCcEEEECC-----CCchhCH
Confidence 445666899998763 211 1122378899999888886666555 674
Q ss_pred hHHHHHHHhCCCEeEEEEEEecCccCCC-CeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Q 024060 192 KPAKQAFDAGVKLIGATSHFVTEELDAG-PIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRV 262 (273)
Q Consensus 192 ~p~~~ai~~G~~~~GvT~H~~~~~~D~G-~Ii~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~i~~l~~g~~ 262 (273)
..+..|+.+|. ..|+-+=..+.+-... +.+....+-+.|+-...+...+ ....+.+.+.+..+.+|+-
T Consensus 271 ~aL~~aL~~g~-i~gA~LDVf~~EP~~~~pL~~~~nvilTPHia~~t~e~~--~~~~~~~~~ni~~~l~g~~ 339 (345)
T 4g2n_A 271 DALIEALRSKH-LFAAGLDVFANEPAIDPRYRSLDNIFLTPHIGSATHETR--DAMGWLLIQGIEALNQSDV 339 (345)
T ss_dssp HHHHHHHHHTS-EEEEEESCCTTTTSCCTTGGGCTTEEECCSCTTCBHHHH--HHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhCC-ceEEEecCCCCCCCCCchHHhCCCEEEcCccCcCCHHHH--HHHHHHHHHHHHHHHcCCC
Confidence 56778888885 4444443333332222 4444445667776433322211 2223455566666677764
No 213
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1
Probab=27.84 E-value=59 Score=25.69 Aligned_cols=28 Identities=18% Similarity=0.234 Sum_probs=20.1
Q ss_pred cHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhc
Q 024060 89 SHVIRFLERHGIPYHYLCAKENEREEELLELVQ 121 (273)
Q Consensus 89 ~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~ 121 (273)
..+..+|+++|||++.+.. .+++-.++.
T Consensus 74 ~~l~~lc~~~~IP~~~v~s-----k~eLG~a~G 101 (135)
T 2aif_A 74 LHLPLVCEDKNTPYVFVRS-----KVALGRACG 101 (135)
T ss_dssp HHHHHHHHHTTCCEEEESC-----HHHHHHHTT
T ss_pred hHHHHHHHhcCCcEEEECC-----HHHHHHHhC
Confidence 4567889999999998753 245666654
No 214
>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}
Probab=27.75 E-value=54 Score=28.04 Aligned_cols=18 Identities=6% Similarity=-0.047 Sum_probs=11.9
Q ss_pred CCceEEEEEECC-chhHHH
Q 024060 45 PKYKVAVLASKQ-EHCLVD 62 (273)
Q Consensus 45 ~~~kiav~~Sg~-g~~l~~ 62 (273)
.++||+|+|.|. |+.+..
T Consensus 2 ~~m~i~iiG~G~~G~~~a~ 20 (295)
T 1yb4_A 2 NAMKLGFIGLGIMGSPMAI 20 (295)
T ss_dssp --CEEEECCCSTTHHHHHH
T ss_pred CCCEEEEEccCHHHHHHHH
Confidence 347999999887 555443
No 215
>1zzg_A Glucose-6-phosphate isomerase; structural genomics, riken structural genomics/PR initiative, RSGI, NPPSFA; 1.95A {Thermus thermophilus}
Probab=27.69 E-value=60 Score=30.64 Aligned_cols=59 Identities=15% Similarity=0.180 Sum_probs=35.6
Q ss_pred CCceEEEEEECCchhHHHH------HHhhh--cC-CCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcC
Q 024060 45 PKYKVAVLASKQEHCLVDF------LYGWQ--EG-KLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA 107 (273)
Q Consensus 45 ~~~kiav~~Sg~g~~l~~l------l~~~~--~~-~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~ 107 (273)
+..-+.|++|++|+..+.+ .+.+. -| .....+++| |++ ..+++.+.|+++||+++.++.
T Consensus 115 ~~~TlviviSKSGtT~ET~~~~~~ar~~l~~~~G~~~~~~~vav-T~~---~~s~L~~~a~~~Gi~~f~~~d 182 (415)
T 1zzg_A 115 PRKTLVNAVSKSGSTAETLAGLAVFLKWLKAHLGEDWRRHLVVT-TDP---KEGPLRAFAEREGLKAFAIPK 182 (415)
T ss_dssp GGGEEEEEEESSSCCHHHHHHHHHHHHHHHHHHGGGGGGGEEEE-ECS---SSSHHHHHHHHHTCEEEECCT
T ss_pred CCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCccccCeEEEE-eCC---CCChHHHHHHHhCCcEEEecc
Confidence 4445888889998643322 11111 02 112456544 443 246899999999999888763
No 216
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=27.67 E-value=1.2e+02 Score=26.04 Aligned_cols=79 Identities=13% Similarity=0.126 Sum_probs=43.7
Q ss_pred CCceEEEEEEC-----Cc--hhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCch----H
Q 024060 45 PKYKVAVLASK-----QE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENER----E 113 (273)
Q Consensus 45 ~~~kiav~~Sg-----~g--~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~----~ 113 (273)
+++||+++... +| ..+..+.+.+ . .++|..+..... ......+....|+++..++...... .
T Consensus 3 ~~mkIl~v~~~~~p~~gG~~~~~~~l~~~L-~---g~~v~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (394)
T 3okp_A 3 ASRKTLVVTNDFPPRIGGIQSYLRDFIATQ-D---PESIVVFASTQN---AEEAHAYDKTLDYEVIRWPRSVMLPTPTTA 75 (394)
T ss_dssp -CCCEEEEESCCTTSCSHHHHHHHHHHTTS-C---GGGEEEEEECSS---HHHHHHHHTTCSSEEEEESSSSCCSCHHHH
T ss_pred CCceEEEEeCccCCccchHHHHHHHHHHHh-c---CCeEEEEECCCC---ccchhhhccccceEEEEccccccccchhhH
Confidence 56899998852 22 2345566555 2 367765544431 1112445567788888776432111 2
Q ss_pred HHHHHHhc--CCCEEEEEe
Q 024060 114 EELLELVQ--NTDFLVLAR 130 (273)
Q Consensus 114 ~~~~~~l~--~~Dlvv~ag 130 (273)
..+.+.++ ++|+|++.+
T Consensus 76 ~~l~~~~~~~~~Dvv~~~~ 94 (394)
T 3okp_A 76 HAMAEIIREREIDNVWFGA 94 (394)
T ss_dssp HHHHHHHHHTTCSEEEESS
T ss_pred HHHHHHHHhcCCCEEEECC
Confidence 34555555 799998533
No 217
>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}
Probab=27.61 E-value=3.2e+02 Score=24.06 Aligned_cols=133 Identities=12% Similarity=0.126 Sum_probs=71.6
Q ss_pred CceEEEEEECC-chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCCC
Q 024060 46 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 124 (273)
Q Consensus 46 ~~kiav~~Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~D 124 (273)
.++|+|+|.|. |..+...+.+. ..+|. +.++.. .. +.+.+.|+... + +.++++++|
T Consensus 142 g~~vgIiG~G~IG~~~A~~l~~~-----G~~V~--~~d~~~---~~--~~~~~~g~~~~--~---------l~ell~~aD 198 (307)
T 1wwk_A 142 GKTIGIIGFGRIGYQVAKIANAL-----GMNIL--LYDPYP---NE--ERAKEVNGKFV--D---------LETLLKESD 198 (307)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHT-----TCEEE--EECSSC---CH--HHHHHTTCEEC--C---------HHHHHHHCS
T ss_pred CceEEEEccCHHHHHHHHHHHHC-----CCEEE--EECCCC---Ch--hhHhhcCcccc--C---------HHHHHhhCC
Confidence 47899999876 55554444432 35653 334321 11 35667786321 1 233455889
Q ss_pred EEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCC--eeEeecCCCCCCCCC----hHHHHHH
Q 024060 125 FLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKD--VINIHHGLLPSFKGG----KPAKQAF 198 (273)
Q Consensus 125 lvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~--~iNiHpslLP~yRG~----~p~~~ai 198 (273)
+|+++--.. -.-+.++..+.++..+.+ +||+ | ||. ..+..++
T Consensus 199 vV~l~~p~~-------------------------~~t~~li~~~~l~~mk~ga~lin~--a-----rg~~vd~~aL~~aL 246 (307)
T 1wwk_A 199 VVTIHVPLV-------------------------ESTYHLINEERLKLMKKTAILINT--S-----RGPVVDTNALVKAL 246 (307)
T ss_dssp EEEECCCCS-------------------------TTTTTCBCHHHHHHSCTTCEEEEC--S-----CGGGBCHHHHHHHH
T ss_pred EEEEecCCC-------------------------hHHhhhcCHHHHhcCCCCeEEEEC--C-----CCcccCHHHHHHHH
Confidence 998763211 112237777888877665 4454 2 352 3567788
Q ss_pred HhCCCEeEEEEEEecCcc--CCCCeeEEEEEecCCCCC
Q 024060 199 DAGVKLIGATSHFVTEEL--DAGPIIEQMVERVSHRDN 234 (273)
Q Consensus 199 ~~G~~~~GvT~H~~~~~~--D~G~Ii~Q~~~~I~~~dt 234 (273)
.+|. ..|+-+-+...+- ...+.+....+-+.|+..
T Consensus 247 ~~g~-i~ga~lDv~~~eP~~~~~~L~~~~nviltPh~~ 283 (307)
T 1wwk_A 247 KEGW-IAGAGLDVFEEEPLPKDHPLTKFDNVVLTPHIG 283 (307)
T ss_dssp HHTS-SSEEEESCCSSSSCCTTCGGGGCTTEEECSSCT
T ss_pred HhCC-CcEEEEecCCCCCCCCCChHHhCCCEEECCccc
Confidence 8875 3444444444321 233555555566666543
No 218
>2gi4_A Possible phosphotyrosine protein phosphatase; low molecular weight, protein tyrosine phosphatase, bacterial phosphatase; NMR {Campylobacter jejuni}
Probab=27.29 E-value=88 Score=25.03 Aligned_cols=79 Identities=14% Similarity=0.127 Sum_probs=43.1
Q ss_pred ceEEEEEECCc--hhH-HHHHHhhhc-CCC--CceEEEEeeCC---CCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHH
Q 024060 47 YKVAVLASKQE--HCL-VDFLYGWQE-GKL--PVEITCVISNH---DRGPNSHVIRFLERHGIPYHYLCAKENEREEELL 117 (273)
Q Consensus 47 ~kiav~~Sg~g--~~l-~~ll~~~~~-~~l--~~~i~~Vvs~~---~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~ 117 (273)
+||.|+.+|+. |.+ ++++..... ..+ ..+|.--=|.. ..+.+....+.++++||++.....+ ....+
T Consensus 2 ~~VLFVC~gNicRSpmAEai~~~~~~~~gl~~~~~v~SAGt~~~~~g~~~~~~a~~~l~~~Gid~s~~~ar-~l~~~--- 77 (156)
T 2gi4_A 2 KKILFICLGNICRSPMAEFIMKDLVKKANLEKEFFINSAGTSGEHDGEGMHYGTKNKLAQLNIEHKNFTSK-KLTQK--- 77 (156)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHHHHHHTTTTTCEEEEEBSSCSSTTCCCCHHHHHHHHHTSCSCCCCCCC-BCCHH---
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEeeecCCcccCCCCCHHHHHHHHHcCCCccCCccc-cCCHH---
Confidence 58888888874 444 445554321 112 13333222221 2234667889999999998532211 12222
Q ss_pred HHhcCCCEEEEEe
Q 024060 118 ELVQNTDFLVLAR 130 (273)
Q Consensus 118 ~~l~~~Dlvv~ag 130 (273)
.+.++|+|+...
T Consensus 78 -d~~~~DlIi~Md 89 (156)
T 2gi4_A 78 -LCDESDFLITMD 89 (156)
T ss_dssp -HHTTCSEEECCC
T ss_pred -HhccCCEEEEEC
Confidence 234789999765
No 219
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2
Probab=26.79 E-value=1.8e+02 Score=24.41 Aligned_cols=76 Identities=13% Similarity=0.131 Sum_probs=37.4
Q ss_pred CceEEEEEE-CC-chh-HHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHH---HHHHcCCCEEEEcCCCCchHHHHHHH
Q 024060 46 KYKVAVLAS-KQ-EHC-LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIR---FLERHGIPYHYLCAKENEREEELLEL 119 (273)
Q Consensus 46 ~~kiav~~S-g~-g~~-l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~---~a~~~gIp~~~~~~~~~~~~~~~~~~ 119 (273)
++||+|.|. |. |+. .+.|++. | ++|.++.-+.....+..-.+ .....|+.+...+- .+.+.+.+.
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~---g---~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~---~d~~~l~~~ 74 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDL---G---HPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSI---DDHASLVEA 74 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHT---T---CCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCT---TCHHHHHHH
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhC---C---CCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEecc---CCHHHHHHH
Confidence 467888773 32 443 3445543 3 56654332221100111111 12345776665441 123567777
Q ss_pred hcCCCEEEEEe
Q 024060 120 VQNTDFLVLAR 130 (273)
Q Consensus 120 l~~~Dlvv~ag 130 (273)
++++|.||.+.
T Consensus 75 ~~~~d~vi~~a 85 (308)
T 1qyc_A 75 VKNVDVVISTV 85 (308)
T ss_dssp HHTCSEEEECC
T ss_pred HcCCCEEEECC
Confidence 77899887654
No 220
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Probab=26.32 E-value=1.3e+02 Score=28.17 Aligned_cols=56 Identities=13% Similarity=0.085 Sum_probs=36.2
Q ss_pred CceEEEEEECCc-h-hHHHHHHhhhcCCCCceEEEEeeCCCCCC-CcHHHHHHHHcCCC-EEEEc
Q 024060 46 KYKVAVLASKQE-H-CLVDFLYGWQEGKLPVEITCVISNHDRGP-NSHVIRFLERHGIP-YHYLC 106 (273)
Q Consensus 46 ~~kiav~~Sg~g-~-~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~-~~~~~~~a~~~gIp-~~~~~ 106 (273)
+.||++..||+- | .+-.++.. . ..++.++..+..... ...+.+.|++.||| ++.++
T Consensus 5 ~~kVvvalSGGlDSsvll~lL~e--~---G~eV~av~vd~g~~~e~e~a~~~A~~lGi~~~~vvd 64 (413)
T 2nz2_A 5 KGSVVLAYSGGLDTSCILVWLKE--Q---GYDVIAYLANIGQKEDFEEARKKALKLGAKKVFIED 64 (413)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHH--T---TEEEEEEEEESSCCCCHHHHHHHHHHHTCSEEEEEE
T ss_pred CCeEEEEEcChHHHHHHHHHHHH--c---CCEEEEEEEECCcHHHHHHHHHHHHHhCCCEEEEEe
Confidence 468999999963 3 33334432 2 368887766653222 24578899999999 66653
No 221
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A
Probab=26.25 E-value=42 Score=24.91 Aligned_cols=28 Identities=21% Similarity=0.241 Sum_probs=19.6
Q ss_pred cHHHHHHHHcCCCEEEE-cCCCCchHHHHHHHhc
Q 024060 89 SHVIRFLERHGIPYHYL-CAKENEREEELLELVQ 121 (273)
Q Consensus 89 ~~~~~~a~~~gIp~~~~-~~~~~~~~~~~~~~l~ 121 (273)
..+..+|+++|||++.+ .. .+++-.++.
T Consensus 48 ~~l~~~c~~~~vp~~~~~~s-----~~eLG~a~G 76 (101)
T 1w41_A 48 EDIEYYARLSGIPVYEFEGT-----SVELGTLLG 76 (101)
T ss_dssp HHHHHHHHHHTCCEEEESSC-----HHHHHHHTT
T ss_pred HHHHHHHHhcCCCEEEecCC-----HHHHHHHhC
Confidence 44678899999998875 42 245666664
No 222
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=25.78 E-value=1.1e+02 Score=26.64 Aligned_cols=77 Identities=16% Similarity=0.115 Sum_probs=39.4
Q ss_pred CceEEEEEECC--chh-HHHHHHhhhcCCCCceEEEEeeCCCCCCCcHH--HHHHHHcCCCEEEEcCCCCchHHHHHHHh
Q 024060 46 KYKVAVLASKQ--EHC-LVDFLYGWQEGKLPVEITCVISNHDRGPNSHV--IRFLERHGIPYHYLCAKENEREEELLELV 120 (273)
Q Consensus 46 ~~kiav~~Sg~--g~~-l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~--~~~a~~~gIp~~~~~~~~~~~~~~~~~~l 120 (273)
++||+|.|..+ |.. ++.|++. | ++|.++.-+... ..... .+.....|+.+...+- .+.+++.+.+
T Consensus 10 ~~~IlVtGatG~iG~~l~~~L~~~---g---~~V~~l~R~~~~-~~~~~~~~~~l~~~~v~~~~~Dl---~d~~~l~~~~ 79 (346)
T 3i6i_A 10 KGRVLIAGATGFIGQFVATASLDA---H---RPTYILARPGPR-SPSKAKIFKALEDKGAIIVYGLI---NEQEAMEKIL 79 (346)
T ss_dssp -CCEEEECTTSHHHHHHHHHHHHT---T---CCEEEEECSSCC-CHHHHHHHHHHHHTTCEEEECCT---TCHHHHHHHH
T ss_pred CCeEEEECCCcHHHHHHHHHHHHC---C---CCEEEEECCCCC-ChhHHHHHHHHHhCCcEEEEeec---CCHHHHHHHH
Confidence 35777777432 333 3344432 3 567655443311 11111 1222356777776542 1245677778
Q ss_pred c--CCCEEEEEeec
Q 024060 121 Q--NTDFLVLARYM 132 (273)
Q Consensus 121 ~--~~Dlvv~ag~~ 132 (273)
+ ++|.||.+...
T Consensus 80 ~~~~~d~Vi~~a~~ 93 (346)
T 3i6i_A 80 KEHEIDIVVSTVGG 93 (346)
T ss_dssp HHTTCCEEEECCCG
T ss_pred hhCCCCEEEECCch
Confidence 7 89988776543
No 223
>3iz5_f 60S ribosomal protein L30 (L30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_f
Probab=25.60 E-value=42 Score=25.79 Aligned_cols=48 Identities=10% Similarity=0.031 Sum_probs=26.8
Q ss_pred EEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEE
Q 024060 52 LASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYL 105 (273)
Q Consensus 52 ~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~ 105 (273)
+.+|.-..++ +++.|+ +.++.+-.+-+...-..+..+|+.++||++.+
T Consensus 27 ~~~G~~~t~k----ai~~gk--akLVilA~D~~~~~~~~i~~~c~~~~ipv~~~ 74 (112)
T 3iz5_f 27 YTLGYKTVLK----TLRSSL--GKLIILANNCPPLRKSEIETYAMLAKISVHHF 74 (112)
T ss_dssp EEESHHHHHH----HHHTTC--CSEEEECSCCCHHHHHHHHHHHHHTTCCEECC
T ss_pred eeECHHHHHH----HHHcCC--ceEEEEeCCCCHHHHHHHHHHHHHcCCcEEEe
Confidence 4555434444 444554 55543333322111244778899999999987
No 224
>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}
Probab=25.60 E-value=1.2e+02 Score=28.17 Aligned_cols=103 Identities=11% Similarity=0.086 Sum_probs=56.3
Q ss_pred CCceEEEEEECC-chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcC-C-----CC-------
Q 024060 45 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA-K-----EN------- 110 (273)
Q Consensus 45 ~~~kiav~~Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~-~-----~~------- 110 (273)
+..||+|+|.|. |..+..++.++ | ++|. +.++. ...++.+++.|.-+..++. . ..
T Consensus 183 ~~~kV~ViG~G~iG~~aa~~a~~l--G---a~V~--v~D~~----~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~ 251 (381)
T 3p2y_A 183 KPASALVLGVGVAGLQALATAKRL--G---AKTT--GYDVR----PEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAE 251 (381)
T ss_dssp CCCEEEEESCSHHHHHHHHHHHHH--T---CEEE--EECSS----GGGHHHHHHTTCEECCCC-------------CHHH
T ss_pred CCCEEEEECchHHHHHHHHHHHHC--C---CEEE--EEeCC----HHHHHHHHHcCCeEEeccccccccccchhhhhHHH
Confidence 457999998875 45555555543 3 5543 34442 2235667777764332110 0 00
Q ss_pred --chHHHHHHHhcCCCEEEEEe-ec-CCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCC
Q 024060 111 --EREEELLELVQNTDFLVLAR-YM-QPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGL 184 (273)
Q Consensus 111 --~~~~~~~~~l~~~Dlvv~ag-~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpsl 184 (273)
...+.+.+.++++|+|+.+- .. ..-| .++..+.++..+.+.+-+--|.
T Consensus 252 ~~~~~~~l~e~l~~aDIVI~tv~iPg~~ap--------------------------~Lvt~emv~~MkpGsVIVDvA~ 303 (381)
T 3p2y_A 252 RAQQQQALEDAITKFDIVITTALVPGRPAP--------------------------RLVTAAAATGMQPGSVVVDLAG 303 (381)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCCCTTSCCC--------------------------CCBCHHHHHTSCTTCEEEETTG
T ss_pred HhhhHHHHHHHHhcCCEEEECCCCCCcccc--------------------------eeecHHHHhcCCCCcEEEEEeC
Confidence 01234556667999998652 11 1111 1788899998877765555553
No 225
>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3
Probab=25.59 E-value=1.9e+02 Score=27.76 Aligned_cols=88 Identities=15% Similarity=0.134 Sum_probs=52.7
Q ss_pred CCceEEEEEECC-chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCC
Q 024060 45 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 123 (273)
Q Consensus 45 ~~~kiav~~Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~ 123 (273)
..++|+|+|.|. |..+...+.++ | ++| ++++++ ..-...+...|..+ . ++.+.++++
T Consensus 256 ~GktVgIIG~G~IG~~vA~~l~~~--G---~~V--iv~d~~----~~~~~~a~~~g~~~---~--------~l~ell~~a 313 (479)
T 1v8b_A 256 SGKIVVICGYGDVGKGCASSMKGL--G---ARV--YITEID----PICAIQAVMEGFNV---V--------TLDEIVDKG 313 (479)
T ss_dssp TTSEEEEECCSHHHHHHHHHHHHH--T---CEE--EEECSC----HHHHHHHHTTTCEE---C--------CHHHHTTTC
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhC--c---CEE--EEEeCC----hhhHHHHHHcCCEe---c--------CHHHHHhcC
Confidence 347899999776 55554444443 3 554 344542 11112345566632 1 134566789
Q ss_pred CEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecC
Q 024060 124 DFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHG 183 (273)
Q Consensus 124 Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHps 183 (273)
|+|+++--.+ .++..+.++..+.+.+=++.|
T Consensus 314 DiVi~~~~t~-----------------------------~lI~~~~l~~MK~gailiNvg 344 (479)
T 1v8b_A 314 DFFITCTGNV-----------------------------DVIKLEHLLKMKNNAVVGNIG 344 (479)
T ss_dssp SEEEECCSSS-----------------------------SSBCHHHHTTCCTTCEEEECS
T ss_pred CEEEECCChh-----------------------------hhcCHHHHhhcCCCcEEEEeC
Confidence 9999883111 288889999888887777766
No 226
>2ppv_A Uncharacterized protein; putative phosphotransferase, structural genomics, joint CENT structural genomics, JCSG; 2.00A {Staphylococcus epidermidis}
Probab=25.20 E-value=90 Score=28.72 Aligned_cols=37 Identities=24% Similarity=0.513 Sum_probs=26.9
Q ss_pred CceEEEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCC
Q 024060 46 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRG 86 (273)
Q Consensus 46 ~~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~ 86 (273)
.+||++|+- |+-+..++...+. +..++++||+--|+.
T Consensus 4 ~~kIv~lgG--GtGl~~ll~gLk~--~~~~iTaIVtv~DDG 40 (332)
T 2ppv_A 4 QMNVVLIGG--GTGLSVLARGLRE--FPIDITAIVTVADNG 40 (332)
T ss_dssp CEEEEEEEC--HHHHHHHHHHHTT--SSEEEEEEECCCCCS
T ss_pred CCeEEEEcC--cccHHHHHHHHHh--CCCCeEEEEECCcCC
Confidence 468888874 5556667766543 468999999988875
No 227
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=24.78 E-value=90 Score=25.61 Aligned_cols=73 Identities=5% Similarity=0.069 Sum_probs=39.5
Q ss_pred CCceEEEEEECCchhHHHHHHhhhc-CCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcC-CCCch--HHHHHHHh
Q 024060 45 PKYKVAVLASKQEHCLVDFLYGWQE-GKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA-KENER--EEELLELV 120 (273)
Q Consensus 45 ~~~kiav~~Sg~g~~l~~ll~~~~~-~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~-~~~~~--~~~~~~~l 120 (273)
.++|++|+.+|..-. +.+ .. |+. .+. ....+.+++++.|..+..... .++.. .+.+.+.+
T Consensus 14 ~~~rv~IittGde~~-~~~----~~~G~i--------~Ds---n~~~L~~~l~~~G~~v~~~~iv~Dd~~~I~~al~~a~ 77 (178)
T 2pjk_A 14 KSLNFYVITISTSRY-EKL----LKKEPI--------VDE---SGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDAL 77 (178)
T ss_dssp CCCEEEEEEECHHHH-HHH----HTTCCC--------CCH---HHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHH
T ss_pred CCCEEEEEEeCcccc-ccc----ccCCeE--------eeh---HHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHH
Confidence 468999999985322 222 23 321 121 123467788899987654331 11110 12333444
Q ss_pred cC--CCEEEEEeecC
Q 024060 121 QN--TDFLVLARYMQ 133 (273)
Q Consensus 121 ~~--~Dlvv~ag~~~ 133 (273)
++ +|+|++.|=.-
T Consensus 78 ~~~~~DlVittGG~s 92 (178)
T 2pjk_A 78 SIDEVDVIISTGGTG 92 (178)
T ss_dssp TCTTCCEEEEESCCS
T ss_pred hcCCCCEEEECCCCC
Confidence 44 89999988443
No 228
>4a17_F RPL7A, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_F 4a1c_F 4a1e_F
Probab=24.77 E-value=2.2e+02 Score=25.23 Aligned_cols=76 Identities=16% Similarity=0.203 Sum_probs=41.3
Q ss_pred CCceEEEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCCC--cHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhc-
Q 024060 45 PKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPN--SHVIRFLERHGIPYHYLCAKENEREEELLELVQ- 121 (273)
Q Consensus 45 ~~~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~--~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~- 121 (273)
+..|-.++.+|.-+.. .++++|. +.++ |+++.-++.+ ..+-.+|+++|||++.++.+ ++|-.++.
T Consensus 118 ~~k~p~~lk~GvneVt----KaIekgK--AqLV-VIA~DvdPielv~~LPaLCee~~VPY~~V~sK-----~~LG~avGr 185 (255)
T 4a17_F 118 ETKKPIVLKYGLNHIT----TLIENKQ--AKLV-VIAHDVDPIELVIFLPQLCRKNDVPFAFVKGK-----AALGKLVNK 185 (255)
T ss_dssp CCCCCCCEEECHHHHH----HHHHTSC--CSEE-EEESCCSSTHHHHHHHHHHHHTTCCEEEESCH-----HHHHHHHTS
T ss_pred CCCCCceeecchHHHH----HHHHcCC--ceEE-EEeCCCChHHHHHHHHHHHHHcCCCEEEECCH-----HHHHHHhCC
Confidence 3445455666643333 3333453 5555 4443322221 23568899999999998732 45666664
Q ss_pred -CCCEEEEEeec
Q 024060 122 -NTDFLVLARYM 132 (273)
Q Consensus 122 -~~Dlvv~ag~~ 132 (273)
.+..+++..++
T Consensus 186 Kt~s~Vaitdv~ 197 (255)
T 4a17_F 186 KTATAVALTEVR 197 (255)
T ss_dssp SCCSEEEECCCC
T ss_pred CcceEEEeeccC
Confidence 35555555444
No 229
>3r5t_A Ferric vibriobactin ABC transporter, periplasmic vibriobactin-binding protein; iron-vibriobactin transport protein; HET: VBN; 1.45A {Vibrio cholerae} PDB: 3r5s_A*
Probab=24.75 E-value=2.2e+02 Score=24.45 Aligned_cols=77 Identities=8% Similarity=-0.005 Sum_probs=40.2
Q ss_pred CCCCceEEEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcC
Q 024060 43 IDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQN 122 (273)
Q Consensus 43 ~~~~~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~ 122 (273)
..++.||+.+. .+..+.|+. + | ..++++-.......-.+....+...++|..--. ...+-|.++++ +
T Consensus 20 ~~~p~RIV~l~---~~~~e~l~a-L--G---~~~Vg~~~~~~~~~~~~~~~~~~~~~~~~vG~~--~~~n~E~I~al--~ 86 (305)
T 3r5t_A 20 PSQPKRILSTA---VTVTGTLLA-I--D---APVIASAATTQSTFFEQWRKLAELRQVKKLWPA--GSVDLESVYVE--Q 86 (305)
T ss_dssp CSCCSSEEESC---HHHHHHHHH-T--T---CCEEEEEECTTSCCCTTTHHHHHHTTCEEEEET--TCCCHHHHHHH--C
T ss_pred cCCCeEEEEEC---cchhHHHHH-c--C---CceEEEeccccccccchhHhhHhhcCCCccCCC--CCCCHHHHHhc--C
Confidence 34678988775 344444443 2 3 367877654321111122222345688876311 12333444433 9
Q ss_pred CCEEEEEeec
Q 024060 123 TDFLVLARYM 132 (273)
Q Consensus 123 ~Dlvv~ag~~ 132 (273)
||+|+..++.
T Consensus 87 PDLIi~~~~~ 96 (305)
T 3r5t_A 87 PDLIVVSMIG 96 (305)
T ss_dssp CSEEEEESSS
T ss_pred CCEEEEeccc
Confidence 9999877653
No 230
>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*
Probab=24.58 E-value=1.2e+02 Score=27.53 Aligned_cols=70 Identities=16% Similarity=0.221 Sum_probs=39.2
Q ss_pred CCceEEEEEECCc-h-hHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHc----CCCEEEEcCCCCchHHHHHH
Q 024060 45 PKYKVAVLASKQE-H-CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERH----GIPYHYLCAKENEREEELLE 118 (273)
Q Consensus 45 ~~~kiav~~Sg~g-~-~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~----gIp~~~~~~~~~~~~~~~~~ 118 (273)
...+|+|+|+|.- . .+.+++.. .+ .+-+ .+.+++ .....+++++. |+++..+. ++.+
T Consensus 128 ~~~~v~iIGaG~~a~~~a~al~~~--~~---~~~V-~V~~r~---~~~a~~la~~~~~~~g~~~~~~~--------~~~e 190 (350)
T 1x7d_A 128 NARKMALIGNGAQSEFQALAFHKH--LG---IEEI-VAYDTD---PLATAKLIANLKEYSGLTIRRAS--------SVAE 190 (350)
T ss_dssp TCCEEEEECCSTTHHHHHHHHHHH--SC---CCEE-EEECSS---HHHHHHHHHHHTTCTTCEEEECS--------SHHH
T ss_pred cCCeEEEECCcHHHHHHHHHHHHh--CC---CcEE-EEEcCC---HHHHHHHHHHHHhccCceEEEeC--------CHHH
Confidence 3479999999863 2 34455432 11 2223 344553 23455666664 66654432 1234
Q ss_pred HhcCCCEEEEEee
Q 024060 119 LVQNTDFLVLARY 131 (273)
Q Consensus 119 ~l~~~Dlvv~ag~ 131 (273)
.++++|+|+++--
T Consensus 191 av~~aDiVi~aTp 203 (350)
T 1x7d_A 191 AVKGVDIITTVTA 203 (350)
T ss_dssp HHTTCSEEEECCC
T ss_pred HHhcCCEEEEecc
Confidence 5568999998763
No 231
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=24.35 E-value=95 Score=24.98 Aligned_cols=18 Identities=22% Similarity=0.300 Sum_probs=12.6
Q ss_pred HHHHHHHhcCCCEEEEEe
Q 024060 113 EEELLELVQNTDFLVLAR 130 (273)
Q Consensus 113 ~~~~~~~l~~~Dlvv~ag 130 (273)
.+++.+.++++|.||.+.
T Consensus 58 ~~~~~~~~~~~d~vi~~a 75 (227)
T 3dhn_A 58 LDEVCEVCKGADAVISAF 75 (227)
T ss_dssp HHHHHHHHTTCSEEEECC
T ss_pred HHHHHHHhcCCCEEEEeC
Confidence 456777777899887653
No 232
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=24.17 E-value=2e+02 Score=25.48 Aligned_cols=8 Identities=0% Similarity=0.272 Sum_probs=5.9
Q ss_pred CceEEEEE
Q 024060 46 KYKVAVLA 53 (273)
Q Consensus 46 ~~kiav~~ 53 (273)
++|++|++
T Consensus 24 m~~i~vI~ 31 (337)
T 2qv7_A 24 RKRARIIY 31 (337)
T ss_dssp CEEEEEEE
T ss_pred cceEEEEE
Confidence 34788888
No 233
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_G
Probab=24.15 E-value=54 Score=25.40 Aligned_cols=51 Identities=14% Similarity=0.211 Sum_probs=28.9
Q ss_pred EEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCCC--cHHHHHHHHcCCCEEEEcCC
Q 024060 51 VLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPN--SHVIRFLERHGIPYHYLCAK 108 (273)
Q Consensus 51 v~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~--~~~~~~a~~~gIp~~~~~~~ 108 (273)
++.+|.- ....++++|. +.++ |+.+.-++.. ..+..+|+++|||++.+..+
T Consensus 25 ~l~~G~~----~v~kaI~~gk--a~LV-vIA~D~~p~~i~~~l~~lC~~~~VP~~~v~sk 77 (113)
T 3jyw_G 25 AVKYGLN----HVVALIENKK--AKLV-LIANDVDPIELVVFLPALCKKMGVPYAIVKGK 77 (113)
T ss_dssp CEEESHH----HHHHTTTTTC--CSEE-EECSCCSSHHHHTTHHHHHHHTTCCCEECSCS
T ss_pred hhhchHH----HHHHHHHcCC--ceEE-EEeCCCCHHHHHHHHHHHHHHcCCCEEEECCH
Confidence 3555533 3344555554 5554 3333212211 34678999999999988754
No 234
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2
Probab=24.05 E-value=1.1e+02 Score=25.99 Aligned_cols=75 Identities=11% Similarity=0.138 Sum_probs=37.1
Q ss_pred CceEEEEE-ECC-chh-HHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHH---HHHcCCCEEEEcCCCCchHHHHHHH
Q 024060 46 KYKVAVLA-SKQ-EHC-LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRF---LERHGIPYHYLCAKENEREEELLEL 119 (273)
Q Consensus 46 ~~kiav~~-Sg~-g~~-l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~---a~~~gIp~~~~~~~~~~~~~~~~~~ 119 (273)
++||+|.| ||. |+. .+.|++. | ++|.++.-+.. .....-.+. ....|+.+...+- .+.+.+.+.
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~---g---~~V~~~~R~~~-~~~~~~~~~~~~~~~~~~~~~~~D~---~d~~~l~~~ 73 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISL---G---HPTYVLFRPEV-VSNIDKVQMLLYFKQLGAKLIEASL---DDHQRLVDA 73 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHT---T---CCEEEECCSCC-SSCHHHHHHHHHHHTTTCEEECCCS---SCHHHHHHH
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhC---C---CcEEEEECCCc-ccchhHHHHHHHHHhCCeEEEeCCC---CCHHHHHHH
Confidence 46787777 343 443 3445543 3 56654433221 110111111 1245676654431 223567777
Q ss_pred hcCCCEEEEEe
Q 024060 120 VQNTDFLVLAR 130 (273)
Q Consensus 120 l~~~Dlvv~ag 130 (273)
++++|.||.+.
T Consensus 74 ~~~~d~vi~~a 84 (313)
T 1qyd_A 74 LKQVDVVISAL 84 (313)
T ss_dssp HTTCSEEEECC
T ss_pred HhCCCEEEECC
Confidence 77899887644
No 235
>2l17_A Synarsc, arsenate reductase; alpha/beta sandwich, oxidoreductase; NMR {Synechocystis} PDB: 2l18_A 2l19_A
Probab=24.04 E-value=64 Score=25.14 Aligned_cols=76 Identities=14% Similarity=0.144 Sum_probs=42.7
Q ss_pred CceEEEEEECCc--hhH-HHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcC
Q 024060 46 KYKVAVLASKQE--HCL-VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQN 122 (273)
Q Consensus 46 ~~kiav~~Sg~g--~~l-~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~ 122 (273)
++||.|+.+|+. |.+ ++++.....+. .++.--=+. ..+.+....+.++++||++.....+ ...++ .+.+
T Consensus 4 m~~VLFVC~gN~cRSpmAEa~~~~~~~~~--~~v~SAGt~-g~~~~~~a~~~l~e~Gid~s~~~sr-~l~~~----~~~~ 75 (134)
T 2l17_A 4 MKKVMFVCKRNSCRSQMAEGFAKTLGAGK--IAVTSCGLE-SSRVHPTAIAMMEEVGIDISGQTSD-PIENF----NADD 75 (134)
T ss_dssp CEEEEEECCSSTHHHHHHHHHHHHHSBTT--EEEEEECCT-TSSCCHHHHHHHHTTTCCCSSCCCC-CGGGC----CGGG
T ss_pred CCEEEEEeCCchHHHHHHHHHHHHHcCCC--EEEEcccCC-CCCCCHHHHHHHHHcCCCcccCccc-cCChH----Hhcc
Confidence 568888888874 444 55776654332 333222222 2334667889999999997421111 11111 1237
Q ss_pred CCEEEEE
Q 024060 123 TDFLVLA 129 (273)
Q Consensus 123 ~Dlvv~a 129 (273)
+|+|+..
T Consensus 76 ~DlIi~m 82 (134)
T 2l17_A 76 YDVVISL 82 (134)
T ss_dssp CSEEEEC
T ss_pred CCEEEEe
Confidence 8999865
No 236
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}
Probab=23.96 E-value=3.4e+02 Score=23.38 Aligned_cols=67 Identities=18% Similarity=0.210 Sum_probs=34.9
Q ss_pred CCceEEEEEECC-chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCC
Q 024060 45 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 123 (273)
Q Consensus 45 ~~~kiav~~Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~ 123 (273)
+.++|+|+|.|. |..+...+... | ++|. +.++. ..-.+.+.+.|+.+... +++.+.++++
T Consensus 156 ~g~~v~IiG~G~iG~~~a~~l~~~--G---~~V~--~~d~~----~~~~~~~~~~g~~~~~~--------~~l~~~l~~a 216 (300)
T 2rir_A 156 HGSQVAVLGLGRTGMTIARTFAAL--G---ANVK--VGARS----SAHLARITEMGLVPFHT--------DELKEHVKDI 216 (300)
T ss_dssp TTSEEEEECCSHHHHHHHHHHHHT--T---CEEE--EEESS----HHHHHHHHHTTCEEEEG--------GGHHHHSTTC
T ss_pred CCCEEEEEcccHHHHHHHHHHHHC--C---CEEE--EEECC----HHHHHHHHHCCCeEEch--------hhHHHHhhCC
Confidence 347999999875 34433333332 2 4543 33442 11123334567643211 1244556789
Q ss_pred CEEEEEe
Q 024060 124 DFLVLAR 130 (273)
Q Consensus 124 Dlvv~ag 130 (273)
|+|+++-
T Consensus 217 DvVi~~~ 223 (300)
T 2rir_A 217 DICINTI 223 (300)
T ss_dssp SEEEECC
T ss_pred CEEEECC
Confidence 9999864
No 237
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}
Probab=23.86 E-value=2.2e+02 Score=24.18 Aligned_cols=76 Identities=9% Similarity=0.033 Sum_probs=37.9
Q ss_pred CCceEEEEEE-CC-chh-HHHHHHhhhcCCCCceEEEEeeCCC-CCCCcHHHH---HHHHcCCCEEEEcCCCCchHHHHH
Q 024060 45 PKYKVAVLAS-KQ-EHC-LVDFLYGWQEGKLPVEITCVISNHD-RGPNSHVIR---FLERHGIPYHYLCAKENEREEELL 117 (273)
Q Consensus 45 ~~~kiav~~S-g~-g~~-l~~ll~~~~~~~l~~~i~~Vvs~~~-~~~~~~~~~---~a~~~gIp~~~~~~~~~~~~~~~~ 117 (273)
.++||+|.|. |. |+. .+.|++. | ++|.++. .+. ......-.+ .....|+.+...+- .+.+.+.
T Consensus 3 ~~~~ilVtGatG~iG~~l~~~L~~~---g---~~V~~~~-R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~---~d~~~l~ 72 (321)
T 3c1o_A 3 HMEKIIIYGGTGYIGKFMVRASLSF---S---HPTFIYA-RPLTPDSTPSSVQLREEFRSMGVTIIEGEM---EEHEKMV 72 (321)
T ss_dssp -CCCEEEETTTSTTHHHHHHHHHHT---T---CCEEEEE-CCCCTTCCHHHHHHHHHHHHTTCEEEECCT---TCHHHHH
T ss_pred cccEEEEEcCCchhHHHHHHHHHhC---C---CcEEEEE-CCcccccChHHHHHHHHhhcCCcEEEEecC---CCHHHHH
Confidence 3567777773 32 443 3445542 3 5665443 322 111111111 12346777766542 1235677
Q ss_pred HHhcCCCEEEEEe
Q 024060 118 ELVQNTDFLVLAR 130 (273)
Q Consensus 118 ~~l~~~Dlvv~ag 130 (273)
+.++++|.||.+.
T Consensus 73 ~a~~~~d~vi~~a 85 (321)
T 3c1o_A 73 SVLKQVDIVISAL 85 (321)
T ss_dssp HHHTTCSEEEECC
T ss_pred HHHcCCCEEEECC
Confidence 7777899887654
No 238
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=23.81 E-value=1.7e+02 Score=24.90 Aligned_cols=41 Identities=15% Similarity=0.226 Sum_probs=26.7
Q ss_pred HHHHHHHcCCCE--EEEcCCCCchHHHHHHHhc--CCCEEEEEeecC
Q 024060 91 VIRFLERHGIPY--HYLCAKENEREEELLELVQ--NTDFLVLARYMQ 133 (273)
Q Consensus 91 ~~~~a~~~gIp~--~~~~~~~~~~~~~~~~~l~--~~Dlvv~ag~~~ 133 (273)
+.++++++|++. ..+. . ....+++.+..+ ++|++|+..+++
T Consensus 233 l~~~~~~~~~~~~~~~v~-~-g~~~~~I~~~a~~~~~dLiV~G~~g~ 277 (319)
T 3olq_A 233 MKELRQKFSIPEEKTHVK-E-GLPEQVIPQVCEELNAGIVVLGILGR 277 (319)
T ss_dssp HHHHHHHTTCCGGGEEEE-E-SCHHHHHHHHHHHTTEEEEEEECCSC
T ss_pred HHHHHHHhCCCcccEEEe-c-CCcHHHHHHHHHHhCCCEEEEeccCc
Confidence 456678889862 1121 1 233567777775 799999988876
No 239
>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}
Probab=23.69 E-value=46 Score=29.86 Aligned_cols=34 Identities=9% Similarity=-0.084 Sum_probs=20.9
Q ss_pred CCceEEEEEECCc-h--hHHHHHHhhhcCCCCceEEEEeeCC
Q 024060 45 PKYKVAVLASKQE-H--CLVDFLYGWQEGKLPVEITCVISNH 83 (273)
Q Consensus 45 ~~~kiav~~Sg~g-~--~l~~ll~~~~~~~l~~~i~~Vvs~~ 83 (273)
+++||+|+|.|.. . .+..+ ... + .+++++|+...
T Consensus 4 ~~~rvgiiG~G~~g~~~~~~~l-~~~--~--~~~l~av~d~~ 40 (362)
T 3fhl_A 4 EIIKTGLAAFGMSGQVFHAPFI-STN--P--HFELYKIVERS 40 (362)
T ss_dssp CCEEEEESCCSHHHHHTTHHHH-HHC--T--TEEEEEEECSS
T ss_pred CceEEEEECCCHHHHHHHHHHH-hhC--C--CeEEEEEEcCC
Confidence 4589999998863 2 23333 221 2 48888887644
No 240
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=23.58 E-value=97 Score=25.53 Aligned_cols=56 Identities=5% Similarity=-0.014 Sum_probs=34.6
Q ss_pred ceEEEEEECCc--hhHHHHHHhhhcCCCCceEEEEeeCCCCCC---CcHHHHHHHHcCCCEEEEcC
Q 024060 47 YKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP---NSHVIRFLERHGIPYHYLCA 107 (273)
Q Consensus 47 ~kiav~~Sg~g--~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~---~~~~~~~a~~~gIp~~~~~~ 107 (273)
-||+|-.||+- +.|-.++... + .++.+|..++.-.. ...+.++|+++|||+..+..
T Consensus 45 ~~v~Va~SGGkDS~vLL~ll~~~--~---~~v~~v~vd~g~~~~e~~~~v~~~~~~~gi~~~v~~~ 105 (215)
T 1sur_A 45 GEYVLSSSFGIQAAVSLHLVNQI--R---PDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRA 105 (215)
T ss_dssp SEEEEECCCCTTHHHHHHHHHHH--S---TTCEEEEEECSCBCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCEEEEecCCHHHHHHHHHHHHh--C---CCCeEEEeeCCCCCHHHHHHHHHHHHHhCCcEEEEeC
Confidence 47888888853 3444444433 2 24555666653221 24578889999999988753
No 241
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=23.46 E-value=2.3e+02 Score=25.57 Aligned_cols=71 Identities=8% Similarity=0.143 Sum_probs=36.7
Q ss_pred EEEEECC-chhHHHHHHhhhcCCCCceEEEEeeC-CCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCCCEEE
Q 024060 50 AVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISN-HDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLV 127 (273)
Q Consensus 50 av~~Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~-~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~Dlvv 127 (273)
.||.-+. ++.+..|..+.+.|+ +.+| +++. ++...+..+.....+.|||+..+.. ..+...++++|.|+
T Consensus 124 ~ILTh~~S~tv~~~l~~A~~~gk-~~~V--~v~EsrP~~qG~~la~~L~~~gI~vtli~D------sa~~~~m~~vd~Vi 194 (315)
T 3ecs_A 124 TILTHAYSRVVLRVLEAAVAAKK-RFSV--YVTESQPDLSGKKMAKALCHLNVPVTVVLD------AAVGYIMEKADLVI 194 (315)
T ss_dssp EEEECSCCHHHHHHHHHHHTTTC-CEEE--EEECCTTTTHHHHHHHHHHTTTCCEEEECG------GGHHHHGGGCSEEE
T ss_pred EEEEcCCcHHHHHHHHHHHHcCC-eEEE--EEecCCCcchHHHHHHHHHHcCCCEEEEeh------hHHHHHHHhCCEEE
Confidence 4444333 455555666655554 3444 3332 2211122233444668999988763 12344556788776
Q ss_pred EE
Q 024060 128 LA 129 (273)
Q Consensus 128 ~a 129 (273)
+.
T Consensus 195 vG 196 (315)
T 3ecs_A 195 VG 196 (315)
T ss_dssp EE
T ss_pred EC
Confidence 53
No 242
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=23.40 E-value=2.4e+02 Score=23.92 Aligned_cols=35 Identities=11% Similarity=0.132 Sum_probs=21.8
Q ss_pred HHHHHhcCCCEEEEEe--ecCCcchhhHhhhhhhhhh
Q 024060 115 ELLELVQNTDFLVLAR--YMQPVPLQKEAYLGYKLLE 149 (273)
Q Consensus 115 ~~~~~l~~~Dlvv~ag--~~~~~p~~~~~~~~~~~~~ 149 (273)
+..+.+..+|.+|++. |..=+|-+--+|+|.-+..
T Consensus 76 ~~~~~l~~aD~iv~~~P~y~~~~p~~lK~~iD~v~~~ 112 (218)
T 3rpe_A 76 SEIENYLWADTIIYQMPAWWMGEPWILKKYIDEVFTD 112 (218)
T ss_dssp HHHHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEEECChHhccCCHHHHHHHHHHHhc
Confidence 4455666889887764 3344666666777755444
No 243
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=23.34 E-value=4.3e+02 Score=24.92 Aligned_cols=71 Identities=13% Similarity=0.119 Sum_probs=34.2
Q ss_pred hHHHHHHhhhcCCCCceEEEEeeCCCCCC-CcHHHHHHHHcCCCEEEEcCCCCchHH---HHHHHhc--CCCEEEEEeec
Q 024060 59 CLVDFLYGWQEGKLPVEITCVISNHDRGP-NSHVIRFLERHGIPYHYLCAKENEREE---ELLELVQ--NTDFLVLARYM 132 (273)
Q Consensus 59 ~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~-~~~~~~~a~~~gIp~~~~~~~~~~~~~---~~~~~l~--~~Dlvv~ag~~ 132 (273)
.+..|...+... ...+..|-++.-++. ...+..+++..|+|++...... ...+ +.++.+. ++|++++=.-+
T Consensus 116 t~~kLA~~l~~~--G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~-dp~~i~~~al~~a~~~~~DvVIIDTaG 192 (443)
T 3dm5_A 116 TVAKLARYFQKR--GYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEK-DAIKLAKEGVDYFKSKGVDIIIVDTAG 192 (443)
T ss_dssp HHHHHHHHHHTT--TCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCC-CHHHHHHHHHHHHHHTTCSEEEEECCC
T ss_pred HHHHHHHHHHHC--CCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCC-CHHHHHHHHHHHHHhCCCCEEEEECCC
Confidence 344455444432 245544444432221 1235577888999988543211 1111 1222232 59999984433
No 244
>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*
Probab=23.33 E-value=2.2e+02 Score=27.01 Aligned_cols=87 Identities=14% Similarity=0.133 Sum_probs=53.6
Q ss_pred CceEEEEEECC-chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCCC
Q 024060 46 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 124 (273)
Q Consensus 46 ~~kiav~~Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~D 124 (273)
.++|+|+|-|. |..+...+.++ .++| ++++++ ..-...|...|..+. .+.+.++++|
T Consensus 211 GktVgIiG~G~IG~~vA~~Lka~-----Ga~V--iv~D~~----p~~a~~A~~~G~~~~-----------sL~eal~~AD 268 (436)
T 3h9u_A 211 GKTACVCGYGDVGKGCAAALRGF-----GARV--VVTEVD----PINALQAAMEGYQVL-----------LVEDVVEEAH 268 (436)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHT-----TCEE--EEECSC----HHHHHHHHHTTCEEC-----------CHHHHTTTCS
T ss_pred CCEEEEEeeCHHHHHHHHHHHHC-----CCEE--EEECCC----hhhhHHHHHhCCeec-----------CHHHHHhhCC
Confidence 47889888775 44444444442 3554 345552 112234556676432 1445667899
Q ss_pred EEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecC
Q 024060 125 FLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHG 183 (273)
Q Consensus 125 lvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHps 183 (273)
+++++.-.+ .++..+.++..+.+.+=++.|
T Consensus 269 VVilt~gt~-----------------------------~iI~~e~l~~MK~gAIVINvg 298 (436)
T 3h9u_A 269 IFVTTTGND-----------------------------DIITSEHFPRMRDDAIVCNIG 298 (436)
T ss_dssp EEEECSSCS-----------------------------CSBCTTTGGGCCTTEEEEECS
T ss_pred EEEECCCCc-----------------------------CccCHHHHhhcCCCcEEEEeC
Confidence 998754322 278888899888888888887
No 245
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}
Probab=23.21 E-value=2.6e+02 Score=23.42 Aligned_cols=32 Identities=16% Similarity=0.212 Sum_probs=20.4
Q ss_pred HHcCCCEEEEcCCCCchHHHHHHHhcCCCEEEEEe
Q 024060 96 ERHGIPYHYLCAKENEREEELLELVQNTDFLVLAR 130 (273)
Q Consensus 96 ~~~gIp~~~~~~~~~~~~~~~~~~l~~~Dlvv~ag 130 (273)
...|+.+...+- .+.+.+.+.++++|.||.+.
T Consensus 53 ~~~~v~~v~~D~---~d~~~l~~~~~~~d~vi~~a 84 (307)
T 2gas_A 53 QSLGVILLEGDI---NDHETLVKAIKQVDIVICAA 84 (307)
T ss_dssp HHTTCEEEECCT---TCHHHHHHHHTTCSEEEECS
T ss_pred HhCCCEEEEeCC---CCHHHHHHHHhCCCEEEECC
Confidence 346777766542 12356777777899887654
No 246
>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*
Probab=23.18 E-value=83 Score=26.92 Aligned_cols=18 Identities=22% Similarity=0.431 Sum_probs=12.5
Q ss_pred HHHHHHHhcCCCEEEEEe
Q 024060 113 EEELLELVQNTDFLVLAR 130 (273)
Q Consensus 113 ~~~~~~~l~~~Dlvv~ag 130 (273)
++.+.+.+.++|+||.+.
T Consensus 112 ~~~~~~~~~~~DvVi~~~ 129 (249)
T 1jw9_B 112 DAELAALIAEHDLVLDCT 129 (249)
T ss_dssp HHHHHHHHHTSSEEEECC
T ss_pred HhHHHHHHhCCCEEEEeC
Confidence 344555667899998775
No 247
>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}
Probab=22.98 E-value=1.1e+02 Score=27.63 Aligned_cols=21 Identities=24% Similarity=0.181 Sum_probs=14.9
Q ss_pred CCceEEEEEECC-chhHHHHHH
Q 024060 45 PKYKVAVLASKQ-EHCLVDFLY 65 (273)
Q Consensus 45 ~~~kiav~~Sg~-g~~l~~ll~ 65 (273)
.++||+|+|+|. |+.+...+.
T Consensus 28 ~~mkI~VIGaG~mG~alA~~La 49 (356)
T 3k96_A 28 FKHPIAILGAGSWGTALALVLA 49 (356)
T ss_dssp CCSCEEEECCSHHHHHHHHHHH
T ss_pred cCCeEEEECccHHHHHHHHHHH
Confidence 357999999986 566655443
No 248
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Probab=22.91 E-value=24 Score=31.80 Aligned_cols=35 Identities=17% Similarity=0.249 Sum_probs=20.7
Q ss_pred CCceEEEEE-ECC-chhHHHHHHhhhcCCCCceEEEEeeCC
Q 024060 45 PKYKVAVLA-SKQ-EHCLVDFLYGWQEGKLPVEITCVISNH 83 (273)
Q Consensus 45 ~~~kiav~~-Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~ 83 (273)
.++||+|.| +|. |..+ ++.+.+. ...++++++..+
T Consensus 20 ~~irV~V~Ga~GrMGr~i---~~~v~~~-~~~eLvg~vd~~ 56 (288)
T 3ijp_A 20 GSMRLTVVGANGRMGREL---ITAIQRR-KDVELCAVLVRK 56 (288)
T ss_dssp -CEEEEESSTTSHHHHHH---HHHHHTC-SSEEEEEEBCCT
T ss_pred CCeEEEEECCCCHHHHHH---HHHHHhC-CCCEEEEEEecC
Confidence 568988888 654 4433 3332221 258999998765
No 249
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=22.83 E-value=2.2e+02 Score=24.92 Aligned_cols=75 Identities=12% Similarity=0.246 Sum_probs=40.0
Q ss_pred CceEEEEEECCc-hhH-HHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCC
Q 024060 46 KYKVAVLASKQE-HCL-VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 123 (273)
Q Consensus 46 ~~kiav~~Sg~g-~~l-~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~ 123 (273)
.++|.|+..|.+ .++ ..+++++... .++. ||+.+..+....+.+.+++++ .+...+.. +++.+++..+
T Consensus 157 ~~~ILv~~GG~d~~~l~~~vl~~L~~~---~~i~-vv~G~~~~~~~~l~~~~~~~~-~v~v~~~~-----~~m~~~m~~a 226 (282)
T 3hbm_A 157 KYDFFICMGGTDIKNLSLQIASELPKT---KIIS-IATSSSNPNLKKLQKFAKLHN-NIRLFIDH-----ENIAKLMNES 226 (282)
T ss_dssp CEEEEEECCSCCTTCHHHHHHHHSCTT---SCEE-EEECTTCTTHHHHHHHHHTCS-SEEEEESC-----SCHHHHHHTE
T ss_pred CCeEEEEECCCchhhHHHHHHHHhhcC---CCEE-EEECCCchHHHHHHHHHhhCC-CEEEEeCH-----HHHHHHHHHC
Confidence 467766655543 333 4566665432 2344 555553322233455555443 44444321 2366677799
Q ss_pred CEEEEEe
Q 024060 124 DFLVLAR 130 (273)
Q Consensus 124 Dlvv~ag 130 (273)
|++|++|
T Consensus 227 DlvI~~g 233 (282)
T 3hbm_A 227 NKLIISA 233 (282)
T ss_dssp EEEEEES
T ss_pred CEEEECC
Confidence 9999976
No 250
>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}
Probab=22.79 E-value=1.5e+02 Score=28.10 Aligned_cols=73 Identities=10% Similarity=0.092 Sum_probs=37.5
Q ss_pred CCceEEEEEECC-chh-HHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcC
Q 024060 45 PKYKVAVLASKQ-EHC-LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQN 122 (273)
Q Consensus 45 ~~~kiav~~Sg~-g~~-l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~ 122 (273)
.++||+|+|+|. |.. +.+|++ .+ .++| ++.+++ .....+++++.++.+..++- .+.+++.+.+++
T Consensus 22 ~~k~VlIiGAGgiG~aia~~L~~---~~--g~~V--~v~~R~---~~ka~~la~~~~~~~~~~D~---~d~~~l~~~l~~ 88 (467)
T 2axq_A 22 MGKNVLLLGSGFVAQPVIDTLAA---ND--DINV--TVACRT---LANAQALAKPSGSKAISLDV---TDDSALDKVLAD 88 (467)
T ss_dssp -CEEEEEECCSTTHHHHHHHHHT---ST--TEEE--EEEESS---HHHHHHHHGGGTCEEEECCT---TCHHHHHHHHHT
T ss_pred CCCEEEEECChHHHHHHHHHHHh---CC--CCeE--EEEECC---HHHHHHHHHhcCCcEEEEec---CCHHHHHHHHcC
Confidence 357899998754 222 233332 22 2454 344542 12344555555665544431 123456666678
Q ss_pred CCEEEEEe
Q 024060 123 TDFLVLAR 130 (273)
Q Consensus 123 ~Dlvv~ag 130 (273)
+|+||.+.
T Consensus 89 ~DvVIn~t 96 (467)
T 2axq_A 89 NDVVISLI 96 (467)
T ss_dssp SSEEEECS
T ss_pred CCEEEECC
Confidence 99988763
No 251
>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A
Probab=22.76 E-value=3.1e+02 Score=22.92 Aligned_cols=73 Identities=12% Similarity=0.055 Sum_probs=36.8
Q ss_pred CceEEEEEECC--chh-HHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcC
Q 024060 46 KYKVAVLASKQ--EHC-LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQN 122 (273)
Q Consensus 46 ~~kiav~~Sg~--g~~-l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~ 122 (273)
+++|.|.|..+ |.. .+.|++. | .++|.++.-+++ ... .......|+.+...+- .+.+.+.+.+++
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~---g--~~~V~~~~R~~~---~~~-~~~l~~~~~~~~~~D~---~d~~~l~~~~~~ 72 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLED---G--TFKVRVVTRNPR---KKA-AKELRLQGAEVVQGDQ---DDQVIMELALNG 72 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHH---C--SSEEEEEESCTT---SHH-HHHHHHTTCEEEECCT---TCHHHHHHHHTT
T ss_pred CCEEEEECCCchHHHHHHHHHHhc---C--CceEEEEEcCCC---CHH-HHHHHHCCCEEEEecC---CCHHHHHHHHhc
Confidence 35666666322 333 3444442 3 157765543321 111 1222346777665442 123566677778
Q ss_pred CCEEEEEe
Q 024060 123 TDFLVLAR 130 (273)
Q Consensus 123 ~Dlvv~ag 130 (273)
+|.|+.+.
T Consensus 73 ~d~vi~~a 80 (299)
T 2wm3_A 73 AYATFIVT 80 (299)
T ss_dssp CSEEEECC
T ss_pred CCEEEEeC
Confidence 99888653
No 252
>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1
Probab=22.71 E-value=4e+02 Score=23.53 Aligned_cols=161 Identities=10% Similarity=0.027 Sum_probs=83.3
Q ss_pred CceEEEEEECC-chhHHHHHHhhhcCCCCceEEEEeeCC-CCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCC
Q 024060 46 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNH-DRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 123 (273)
Q Consensus 46 ~~kiav~~Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~-~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~ 123 (273)
.++|+|+|.|. |..+...+.+. ..+|. +.++ .. . . ..+.+.|+.+ .. ++.++++++
T Consensus 146 g~~vgIIG~G~IG~~~A~~l~~~-----G~~V~--~~d~~~~--~-~--~~~~~~g~~~--~~--------~l~ell~~a 203 (320)
T 1gdh_A 146 NKTLGIYGFGSIGQALAKRAQGF-----DMDID--YFDTHRA--S-S--SDEASYQATF--HD--------SLDSLLSVS 203 (320)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTT-----TCEEE--EECSSCC--C-H--HHHHHHTCEE--CS--------SHHHHHHHC
T ss_pred CCEEEEECcCHHHHHHHHHHHHC-----CCEEE--EECCCCc--C-h--hhhhhcCcEE--cC--------CHHHHHhhC
Confidence 47899999876 45554444432 35653 3333 21 1 1 3456677632 11 123445588
Q ss_pred CEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCCCCCCCCC----hHHHHHHH
Q 024060 124 DFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG----KPAKQAFD 199 (273)
Q Consensus 124 Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~----~p~~~ai~ 199 (273)
|+|+++--.. -..+.++..+.++..+.+.+-+--| ||. ..+..++.
T Consensus 204 DvVil~~p~~-------------------------~~t~~~i~~~~l~~mk~gailIn~a-----rg~~vd~~aL~~aL~ 253 (320)
T 1gdh_A 204 QFFSLNAPST-------------------------PETRYFFNKATIKSLPQGAIVVNTA-----RGDLVDNELVVAALE 253 (320)
T ss_dssp SEEEECCCCC-------------------------TTTTTCBSHHHHTTSCTTEEEEECS-----CGGGBCHHHHHHHHH
T ss_pred CEEEEeccCc-------------------------hHHHhhcCHHHHhhCCCCcEEEECC-----CCcccCHHHHHHHHH
Confidence 9998764211 0122367777887777665444444 352 35677787
Q ss_pred hCCCEeEEEEEEecCccCC-CCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Q 024060 200 AGVKLIGATSHFVTEELDA-GPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRV 262 (273)
Q Consensus 200 ~G~~~~GvT~H~~~~~~D~-G~Ii~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~i~~l~~g~~ 262 (273)
+|. ..|+-+-+...+-.. .+.+....+-+.|+....+-.. .....+.. +.+..+.+|+.
T Consensus 254 ~g~-i~gA~lDv~~~eP~~~~~L~~~~nviltPH~~~~t~~~--~~~~~~~~-~nl~~~~~g~~ 313 (320)
T 1gdh_A 254 AGR-LAYAGFDVFAGEPNINEGYYDLPNTFLFPHIGSAATQA--REDMAHQA-NDLIDALFGGA 313 (320)
T ss_dssp HTS-EEEEEESCCTTTTSCCTTGGGCTTEEECSSCTTCBHHH--HHHHHHHH-HHHHHHHHTTS
T ss_pred hCC-CcEEEEeCCCCCCCCCChhhhCCCEEECCcCCcCcHHH--HHHHHHHH-HHHHHHHcCCC
Confidence 775 556555555433222 2344445566666543322221 11223344 66666667753
No 253
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=22.52 E-value=2.5e+02 Score=24.86 Aligned_cols=8 Identities=0% Similarity=-0.230 Sum_probs=4.9
Q ss_pred CceEEEEE
Q 024060 46 KYKVAVLA 53 (273)
Q Consensus 46 ~~kiav~~ 53 (273)
++|++|++
T Consensus 29 ~~~~~vi~ 36 (332)
T 2bon_A 29 FPASLLIL 36 (332)
T ss_dssp -CCEEEEE
T ss_pred cceEEEEE
Confidence 45677776
No 254
>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}
Probab=22.41 E-value=51 Score=28.43 Aligned_cols=64 Identities=14% Similarity=0.087 Sum_probs=33.0
Q ss_pred CceEEEEEECC-chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCCC
Q 024060 46 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 124 (273)
Q Consensus 46 ~~kiav~~Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~D 124 (273)
|+||+|+|.|. |+.+...+.. .| ++|. +.+++. ... +.+.+.|+... . ...+.++++|
T Consensus 1 M~~I~iiG~G~mG~~~a~~l~~--~G---~~V~--~~dr~~---~~~-~~~~~~g~~~~--~--------~~~~~~~~ad 59 (287)
T 3pdu_A 1 MTTYGFLGLGIMGGPMAANLVR--AG---FDVT--VWNRNP---AKC-APLVALGARQA--S--------SPAEVCAACD 59 (287)
T ss_dssp CCCEEEECCSTTHHHHHHHHHH--HT---CCEE--EECSSG---GGG-HHHHHHTCEEC--S--------CHHHHHHHCS
T ss_pred CCeEEEEccCHHHHHHHHHHHH--CC---CeEE--EEcCCH---HHH-HHHHHCCCeec--C--------CHHHHHHcCC
Confidence 46899999987 5555443322 23 4554 334421 122 33344565321 1 1223345789
Q ss_pred EEEEEe
Q 024060 125 FLVLAR 130 (273)
Q Consensus 125 lvv~ag 130 (273)
+|+++-
T Consensus 60 vvi~~v 65 (287)
T 3pdu_A 60 ITIAML 65 (287)
T ss_dssp EEEECC
T ss_pred EEEEEc
Confidence 988763
No 255
>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6
Probab=22.26 E-value=82 Score=26.81 Aligned_cols=68 Identities=15% Similarity=0.094 Sum_probs=36.0
Q ss_pred CceEEEEEECC-chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhc-CC
Q 024060 46 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ-NT 123 (273)
Q Consensus 46 ~~kiav~~Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~-~~ 123 (273)
++||+|+|.|. |+.+...+.. .|. ..+|. +.+++ ..-.+.+++.|+....... +.+.++ ++
T Consensus 1 m~~I~iIG~G~mG~~~a~~l~~--~g~-~~~V~--~~d~~----~~~~~~~~~~g~~~~~~~~--------~~~~~~~~a 63 (281)
T 2g5c_A 1 MQNVLIVGVGFMGGSFAKSLRR--SGF-KGKIY--GYDIN----PESISKAVDLGIIDEGTTS--------IAKVEDFSP 63 (281)
T ss_dssp CCEEEEESCSHHHHHHHHHHHH--TTC-CSEEE--EECSC----HHHHHHHHHTTSCSEEESC--------GGGGGGTCC
T ss_pred CcEEEEEecCHHHHHHHHHHHh--cCC-CcEEE--EEeCC----HHHHHHHHHCCCcccccCC--------HHHHhcCCC
Confidence 36899999876 5554433332 231 22553 34442 2234556678874222211 112466 89
Q ss_pred CEEEEEe
Q 024060 124 DFLVLAR 130 (273)
Q Consensus 124 Dlvv~ag 130 (273)
|+|+++-
T Consensus 64 DvVilav 70 (281)
T 2g5c_A 64 DFVMLSS 70 (281)
T ss_dssp SEEEECS
T ss_pred CEEEEcC
Confidence 9999873
No 256
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=21.69 E-value=51 Score=24.96 Aligned_cols=28 Identities=18% Similarity=0.107 Sum_probs=19.6
Q ss_pred cHHHHHHHHcCCCEEEE-cCCCCchHHHHHHHhc
Q 024060 89 SHVIRFLERHGIPYHYL-CAKENEREEELLELVQ 121 (273)
Q Consensus 89 ~~~~~~a~~~gIp~~~~-~~~~~~~~~~~~~~l~ 121 (273)
..+..+|+++|||++.+ .. .+++-.++.
T Consensus 53 ~~l~~~c~~~~Vp~~~~~~s-----k~eLG~a~G 81 (110)
T 3cpq_A 53 EDVKYYAKLSNIPVYQHKIT-----SLELGAVCG 81 (110)
T ss_dssp HHHHHHHHHTTCCEEECCSC-----HHHHHHHTT
T ss_pred HHHHHHHHHcCCCEEEEcCC-----HHHHHHHhC
Confidence 44678899999998876 32 245666664
No 257
>2q8n_A Glucose-6-phosphate isomerase; TM1385, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: 2PE; 1.82A {Thermotoga maritima MSB8}
Probab=21.33 E-value=90 Score=29.86 Aligned_cols=59 Identities=8% Similarity=-0.003 Sum_probs=35.2
Q ss_pred CCceEEEEEECCchhHHHH------HHhhhc--CCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcC
Q 024060 45 PKYKVAVLASKQEHCLVDF------LYGWQE--GKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA 107 (273)
Q Consensus 45 ~~~kiav~~Sg~g~~l~~l------l~~~~~--~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~ 107 (273)
+..-++|++|.+|+..+.+ .+.+.+ |+....+++| |++ ..+++.+.|+++||+++.++.
T Consensus 139 ~~~TlvIviSKSGtT~ET~~~~~~ar~~l~~~~G~~~~~~VAv-T~~---~~s~L~~~A~~~Gi~~f~~~d 205 (460)
T 2q8n_A 139 PKTTLFNVISKSGSTAEVMATYSIARGILEAYGLDPREHMLIT-TDP---EKGFLRKLVKEEGFRSLEVPP 205 (460)
T ss_dssp GGGEEEEEECSSSCCHHHHHHHHHHHHHHHHTTCCGGGTEEEE-ECS---SSSHHHHHHHHHTCEEEECCT
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCccCeEEEE-eCC---CCChHHHHHHHhCCceEeecc
Confidence 3344778889988643322 122221 2212456544 443 246899999999998888763
No 258
>3uw1_A Ribose-5-phosphate isomerase A; ssgcid, seattle structural genomics center for infectious DI isomerase, ribose isomerase; HET: R5P; 1.71A {Burkholderia thailandensis} PDB: 3u7j_A*
Probab=21.25 E-value=1e+02 Score=27.01 Aligned_cols=73 Identities=15% Similarity=0.135 Sum_probs=40.9
Q ss_pred hHhHHHHHHHHHHHhcccccccccCCCCCCceEEEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHH
Q 024060 17 REQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLE 96 (273)
Q Consensus 17 ~~~l~~~f~~l~~~~~~~~~~~r~~~~~~~~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~ 96 (273)
.+.+++..++-|.++ ... .++ +.+ + ++-|+||....+++++.+.. .++.++|++. ......|+
T Consensus 11 ~~~~K~~aA~~A~~~-V~d---~~~---~g~-v--IGLGtGST~~~~i~~L~~~~--~~i~~~V~tS-----~~t~~~~~ 73 (239)
T 3uw1_A 11 QDELKRLVGEAAARY-VTD---NVP---QGA-V--IGVGTGSTANCFIDALAAVK--DRYRGAVSSS-----VATTERLK 73 (239)
T ss_dssp HHHHHHHHHHHHHHH-HHH---HSC---TTC-E--EEECCSHHHHHHHHHHHTTG--GGSCEEEESS-----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-hhc---cCc---CCC-E--EEECccHHHHHHHHHHHhhh--ccceEEeCCc-----HHHHHHHH
Confidence 356777777666654 100 111 122 3 34455666666666654421 2455567765 23578889
Q ss_pred HcCCCEEEEc
Q 024060 97 RHGIPYHYLC 106 (273)
Q Consensus 97 ~~gIp~~~~~ 106 (273)
++|||+...+
T Consensus 74 ~~Gi~l~~l~ 83 (239)
T 3uw1_A 74 SHGIRVFDLN 83 (239)
T ss_dssp HTTCCBCCGG
T ss_pred HcCCcEEecc
Confidence 9999987554
No 259
>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*
Probab=20.95 E-value=1.2e+02 Score=25.57 Aligned_cols=99 Identities=10% Similarity=0.028 Sum_probs=51.7
Q ss_pred CCChHhHHHHHHHHHHHhccccccccc----------CCCCCCceEEEEEECCchhHHHHHHhhhcCCCCceEEEEeeCC
Q 024060 14 KWPREQMDEDFFKLSKMFNAMRSVVRV----------PDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNH 83 (273)
Q Consensus 14 ~~~~~~l~~~f~~l~~~~~~~~~~~r~----------~~~~~~~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~ 83 (273)
++...|+|++|+.++. |-..+-..++ -..+...|++++|.|.. -++++....... ..++++++...
T Consensus 39 ~~~~~~iRkdls~~g~-~G~~g~gY~v~~L~~~~~~~lg~~~~~rV~IIGaG~~--G~~la~~~~~~~-g~~iVg~~D~d 114 (211)
T 2dt5_A 39 QVTAFQVRKDLSYFGS-YGTRGVGYTVPVLKRELRHILGLNRKWGLCIVGMGRL--GSALADYPGFGE-SFELRGFFDVD 114 (211)
T ss_dssp TSCHHHHHHHHHHTTC-CCCTTTCEEHHHHHHHHHHHHTTTSCEEEEEECCSHH--HHHHHHCSCCCS-SEEEEEEEESC
T ss_pred CCCHHHeechHHHHHH-hcCCceeEEhHHHHHHHHHHhCcCCCCEEEEECccHH--HHHHHHhHhhcC-CcEEEEEEeCC
Confidence 3455788888887743 2111111111 01345688888887652 233444322234 68999999765
Q ss_pred CCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhc-CCCEEEEEe
Q 024060 84 DRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ-NTDFLVLAR 130 (273)
Q Consensus 84 ~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~-~~Dlvv~ag 130 (273)
++.... .-.|+|+...+ ++.+.++ ++|.++++-
T Consensus 115 p~k~g~------~i~gv~V~~~~--------dl~ell~~~ID~ViIA~ 148 (211)
T 2dt5_A 115 PEKVGR------PVRGGVIEHVD--------LLPQRVPGRIEIALLTV 148 (211)
T ss_dssp TTTTTC------EETTEEEEEGG--------GHHHHSTTTCCEEEECS
T ss_pred HHHHhh------hhcCCeeecHH--------hHHHHHHcCCCEEEEeC
Confidence 322111 12467766321 2444554 678887763
No 260
>2zkr_f 60S ribosomal protein L7A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=20.79 E-value=1.6e+02 Score=26.30 Aligned_cols=63 Identities=17% Similarity=0.208 Sum_probs=34.9
Q ss_pred eEEEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCC-CCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhc
Q 024060 48 KVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRG-PNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ 121 (273)
Q Consensus 48 kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~-~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~ 121 (273)
|-..+.+|.-.. +.+++.|. +.++.|-.+-+.. .-..+..+|+++|||++++..+ .+|-.++.
T Consensus 132 ~~~~L~~G~keV----~KaIekgk--AkLVIIA~DasP~ei~~~Lp~LC~~~~VPyi~v~sk-----~eLG~A~G 195 (266)
T 2zkr_f 132 RPPVLRAGVNTV----TTLVENKK--AQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGK-----ARLGHLVH 195 (266)
T ss_dssp SCCCCCBSHHHH----HHHHHTTC--CSEEEEESCCSSSTTTTHHHHHHHHHTCCEEEESCH-----HHHHHHHT
T ss_pred CCCeeeeChHHH----HHHHHhCC--ceEEEEecCCCHHHHHHHHHHHHHhcCCCEEEECCH-----HHHHHHhC
Confidence 334455554333 34444554 5555343333221 1245679999999999988632 45655654
No 261
>4gmk_A Ribose-5-phosphate isomerase A; D-ribose-5-phosphate isomerase family, ribose 5-phosphate isomerisation; 1.72A {Lactobacillus salivarius}
Probab=20.75 E-value=2.1e+02 Score=24.77 Aligned_cols=68 Identities=9% Similarity=0.071 Sum_probs=40.6
Q ss_pred hHhHHHHHHHHHHHhcccccccccCCCCCCceEEEEEECCchhHHHHHHh----hhcCCCCceEEEEeeCCCCCCCcHHH
Q 024060 17 REQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYG----WQEGKLPVEITCVISNHDRGPNSHVI 92 (273)
Q Consensus 17 ~~~l~~~f~~l~~~~~~~~~~~r~~~~~~~~kiav~~Sg~g~~l~~ll~~----~~~~~l~~~i~~Vvs~~~~~~~~~~~ 92 (273)
-+.+++..++-|.++ + .+.+ ++|-|+||...-++++ .+++.+ +|.+|-|+. .-.
T Consensus 4 qd~~K~~aa~~A~~~--------V---~~gm---vvGlGTGSTv~~~i~~L~~~~~~~~l--~i~~V~tS~------~t~ 61 (228)
T 4gmk_A 4 QDELKQLVGTKAVEW--------I---KDGM---IVGLGTGSTVKYMVDALGKRVNEEGL--DIVGVTTSI------RTA 61 (228)
T ss_dssp HHHHHHHHHHHHGGG--------C---CTTC---EEEECCSHHHHHHHHHHHHHHHHHCC--CCEEEESSH------HHH
T ss_pred HHHHHHHHHHHHHHh--------C---CCCC---EEEECchHHHHHHHHHHHHHHhhcCC--cEEEEeCcH------HHH
Confidence 366777666655533 2 2334 4566777654444443 333433 577776653 347
Q ss_pred HHHHHcCCCEEEEc
Q 024060 93 RFLERHGIPYHYLC 106 (273)
Q Consensus 93 ~~a~~~gIp~~~~~ 106 (273)
..|+++|||+...+
T Consensus 62 ~~a~~~Gi~l~~l~ 75 (228)
T 4gmk_A 62 EQAKSLGIVIKDID 75 (228)
T ss_dssp HHHHHTTCCBCCGG
T ss_pred HHHHHcCCceeChH
Confidence 88999999998665
No 262
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=20.47 E-value=1.1e+02 Score=27.69 Aligned_cols=87 Identities=16% Similarity=0.099 Sum_probs=44.8
Q ss_pred cCCCCCCceEEEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCCC----cHHHHHHHHcCCCEEEEcCC-CCchHH
Q 024060 40 VPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPN----SHVIRFLERHGIPYHYLCAK-ENEREE 114 (273)
Q Consensus 40 ~~~~~~~~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~----~~~~~~a~~~gIp~~~~~~~-~~~~~~ 114 (273)
+|....+.||. + |.| ++..+-+.+++ +. +=+.|||++..... ..+.+..++.|+.+..++.- .+.+.+
T Consensus 13 ~~~~~~p~~i~-~--G~g-~~~~l~~~l~~--~g-~~~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~ 85 (371)
T 1o2d_A 13 VWEFYMPTDVF-F--GEK-ILEKRGNIIDL--LG-KRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEENPSFD 85 (371)
T ss_dssp CCCCCCCCEEE-E--STT-HHHHHGGGGGG--TC-SEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSSCBHH
T ss_pred eEEecCCceEE-E--CcC-HHHHHHHHHHH--cC-CEEEEEECchHHhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHH
Confidence 45555666653 3 333 23333333322 12 23567776521111 33555567789988766521 122333
Q ss_pred ---HHHHHhc--CCCEEEEEeecC
Q 024060 115 ---ELLELVQ--NTDFLVLARYMQ 133 (273)
Q Consensus 115 ---~~~~~l~--~~Dlvv~ag~~~ 133 (273)
+..+.++ ++|+||-.|=+.
T Consensus 86 ~v~~~~~~~~~~~~d~IIavGGGs 109 (371)
T 1o2d_A 86 NVMKAVERYRNDSFDFVVGLGGGS 109 (371)
T ss_dssp HHHHHHHHHTTSCCSEEEEEESHH
T ss_pred HHHHHHHHHHhcCCCEEEEeCChH
Confidence 4444444 799999888654
No 263
>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}
Probab=20.44 E-value=92 Score=27.05 Aligned_cols=66 Identities=12% Similarity=0.048 Sum_probs=35.2
Q ss_pred CCceEEEEEECC-chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCC
Q 024060 45 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 123 (273)
Q Consensus 45 ~~~kiav~~Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~ 123 (273)
.++||+|+|.|. |+.+...+.. .| ++|. +.+++ ....+.+.+.|+.... .. +.+.++++
T Consensus 6 ~~~~I~iIG~G~mG~~~a~~l~~--~G---~~V~--~~dr~----~~~~~~~~~~g~~~~~-~~--------~~e~~~~a 65 (303)
T 3g0o_A 6 TDFHVGIVGLGSMGMGAARSCLR--AG---LSTW--GADLN----PQACANLLAEGACGAA-AS--------AREFAGVV 65 (303)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHH--TT---CEEE--EECSC----HHHHHHHHHTTCSEEE-SS--------STTTTTTC
T ss_pred CCCeEEEECCCHHHHHHHHHHHH--CC---CeEE--EEECC----HHHHHHHHHcCCcccc-CC--------HHHHHhcC
Confidence 457999999886 5555443322 23 5553 33542 2234445566776521 21 11234578
Q ss_pred CEEEEEe
Q 024060 124 DFLVLAR 130 (273)
Q Consensus 124 Dlvv~ag 130 (273)
|+|+++-
T Consensus 66 Dvvi~~v 72 (303)
T 3g0o_A 66 DALVILV 72 (303)
T ss_dssp SEEEECC
T ss_pred CEEEEEC
Confidence 9988764
No 264
>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A
Probab=20.44 E-value=1.1e+02 Score=29.22 Aligned_cols=70 Identities=16% Similarity=0.171 Sum_probs=37.6
Q ss_pred CCceEEEEEECC-chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHc--CCCEEEEcCCCCchHHHHHHHhc
Q 024060 45 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERH--GIPYHYLCAKENEREEELLELVQ 121 (273)
Q Consensus 45 ~~~kiav~~Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~--gIp~~~~~~~~~~~~~~~~~~l~ 121 (273)
+++||+|+|.|. |.++..-+.. .| ++|+ +.+++ ...+.+++++. |..+.... ..+++.+.++
T Consensus 3 ~~~kIgiIGlG~MG~~lA~~L~~--~G---~~V~--v~dr~---~~~~~~l~~~g~~g~~i~~~~-----s~~e~v~~l~ 67 (484)
T 4gwg_A 3 AQADIALIGLAVMGQNLILNMND--HG---FVVC--AFNRT---VSKVDDFLANEAKGTKVVGAQ-----SLKEMVSKLK 67 (484)
T ss_dssp CCBSEEEECCSHHHHHHHHHHHH--TT---CCEE--EECSS---THHHHHHHHTTTTTSSCEECS-----SHHHHHHTBC
T ss_pred CCCEEEEEChhHHHHHHHHHHHH--CC---CEEE--EEeCC---HHHHHHHHhcccCCCceeccC-----CHHHHHhhcc
Confidence 458999999886 6666543332 23 4553 34552 23344444432 33332211 2345555555
Q ss_pred CCCEEEEE
Q 024060 122 NTDFLVLA 129 (273)
Q Consensus 122 ~~Dlvv~a 129 (273)
++|+|+++
T Consensus 68 ~aDvVil~ 75 (484)
T 4gwg_A 68 KPRRIILL 75 (484)
T ss_dssp SSCEEEEC
T ss_pred CCCEEEEe
Confidence 79999875
No 265
>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}
Probab=20.18 E-value=90 Score=26.73 Aligned_cols=18 Identities=6% Similarity=0.028 Sum_probs=12.3
Q ss_pred CCceEEEEEECC-chhHHH
Q 024060 45 PKYKVAVLASKQ-EHCLVD 62 (273)
Q Consensus 45 ~~~kiav~~Sg~-g~~l~~ 62 (273)
.++||+|+|.|. |..+..
T Consensus 3 ~~~~i~iiG~G~~G~~~a~ 21 (301)
T 3cky_A 3 KSIKIGFIGLGAMGKPMAI 21 (301)
T ss_dssp -CCEEEEECCCTTHHHHHH
T ss_pred CCCEEEEECccHHHHHHHH
Confidence 357999999886 454433
No 266
>1jf8_A Arsenate reductase; ptpase I fold, P-loop, sulfinic acid, oxidoreductase; 1.12A {Staphylococcus aureus} SCOP: c.44.1.1 PDB: 1jfv_A 2fxi_A 1lju_A* 1rxi_A 1rxe_A 1ljl_A 2cd7_A 1lk0_A
Probab=20.09 E-value=1.4e+02 Score=22.96 Aligned_cols=76 Identities=9% Similarity=0.066 Sum_probs=43.0
Q ss_pred CceEEEEEECCc--hhH-HHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcC
Q 024060 46 KYKVAVLASKQE--HCL-VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQN 122 (273)
Q Consensus 46 ~~kiav~~Sg~g--~~l-~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~ 122 (273)
++||.|+.+|+. |.+ ++++.....+ ..++.--=+.. .+.+....+.++++||++.....+ ...++. +.+
T Consensus 3 ~~~VLFVC~gN~cRSpmAEa~~~~~~~~--~~~v~SAGt~~-~~~~p~a~~~l~~~Gid~s~~~ar-~l~~~~----~~~ 74 (131)
T 1jf8_A 3 KKTIYFISTGNSARSQMAEGWGKEILGE--GWNVYSAGIET-HGVNPKAIEAMKEVDIDISNHTSD-LIDNDI----LKQ 74 (131)
T ss_dssp CEEEEEEESSSSSHHHHHHHHHHHHSTT--TEEEEEEESSC-CCCCHHHHHHHHHTTCCCTTCCCC-BCCHHH----HHH
T ss_pred CCEEEEEcCCcchHHHHHHHHHHHhcCC--CEEEEcCcCCC-CCCCHHHHHHHHHcCCCcccCccc-cCChHH----hcc
Confidence 468998888874 444 5566654322 23443222222 245667889999999997421111 122222 236
Q ss_pred CCEEEEE
Q 024060 123 TDFLVLA 129 (273)
Q Consensus 123 ~Dlvv~a 129 (273)
+|+|+..
T Consensus 75 ~D~Ii~m 81 (131)
T 1jf8_A 75 SDLVVTL 81 (131)
T ss_dssp CSEEEEC
T ss_pred CCEEEEc
Confidence 8999864
Done!