Query 024061
Match_columns 273
No_of_seqs 121 out of 141
Neff 3.1
Searched_HMMs 46136
Date Fri Mar 29 08:38:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024061.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024061hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02893 GRAM: GRAM domain; I 99.3 1.8E-12 3.8E-17 94.0 2.7 66 153-227 2-67 (69)
2 smart00568 GRAM domain in gluc 99.1 1.1E-10 2.3E-15 82.9 3.0 59 160-228 2-60 (61)
3 PF14470 bPH_3: Bacterial PH d 95.3 0.094 2E-06 39.1 6.9 94 161-269 2-95 (96)
4 PF08498 Sterol_MT_C: Sterol m 80.7 1.6 3.4E-05 33.6 2.7 52 99-157 7-58 (67)
5 KOG4347 GTPase-activating prot 80.1 1.8 4E-05 45.5 3.7 96 156-265 14-111 (671)
6 PF06576 DUF1133: Protein of u 76.0 2.2 4.9E-05 38.4 2.6 81 90-198 17-99 (176)
7 PF14844 PH_BEACH: PH domain a 75.2 2.8 6.2E-05 32.6 2.7 84 166-251 2-90 (106)
8 PF07289 DUF1448: Protein of u 67.2 4.1 8.9E-05 39.9 2.4 83 157-254 148-232 (339)
9 PF08567 TFIIH_BTF_p62_N: TFII 65.0 29 0.00063 26.9 6.3 54 181-246 12-67 (79)
10 KOG3473 RNA polymerase II tran 63.3 4.2 9.1E-05 34.3 1.4 21 231-251 11-31 (112)
11 smart00683 DM16 Repeats in sea 55.8 15 0.00033 27.4 3.2 37 178-226 17-53 (55)
12 smart00233 PH Pleckstrin homol 54.9 61 0.0013 22.0 6.0 61 186-254 24-85 (102)
13 PF00169 PH: PH domain; Inter 53.6 42 0.0009 23.7 5.1 61 192-253 21-86 (104)
14 KOG4471 Phosphatidylinositol 3 50.1 11 0.00023 40.1 2.1 64 154-229 30-93 (717)
15 TIGR02681 phage_pRha phage reg 46.7 19 0.00041 29.5 2.7 30 242-271 69-107 (108)
16 KOG2415 Electron transfer flav 44.9 8.7 0.00019 39.8 0.6 37 122-158 345-383 (621)
17 PF03931 Skp1_POZ: Skp1 family 41.0 17 0.00038 26.2 1.5 14 237-250 1-14 (62)
18 PF00515 TPR_1: Tetratricopept 40.0 24 0.00052 21.4 1.9 14 256-269 16-29 (34)
19 PF11605 Vps36_ESCRT-II: Vacuo 39.5 36 0.00077 27.1 3.2 47 181-237 36-82 (89)
20 PF07719 TPR_2: Tetratricopept 39.4 25 0.00055 20.9 1.9 14 256-269 16-29 (34)
21 PF08238 Sel1: Sel1 repeat; I 36.1 24 0.00051 21.9 1.4 17 256-272 23-39 (39)
22 PF01845 CcdB: CcdB protein; 34.8 59 0.0013 26.6 3.8 35 212-252 30-65 (102)
23 PF13181 TPR_8: Tetratricopept 34.2 35 0.00076 20.5 1.9 14 256-269 16-29 (34)
24 cd00900 PH-like Pleckstrin hom 33.6 1.4E+02 0.0031 20.3 5.1 65 179-254 18-84 (99)
25 PF12068 DUF3548: Domain of un 33.5 42 0.00091 30.8 3.0 57 208-268 107-163 (213)
26 PF10882 bPH_5: Bacterial PH d 33.3 35 0.00076 26.0 2.2 25 208-232 12-36 (100)
27 PF13176 TPR_7: Tetratricopept 32.7 36 0.00078 21.7 1.9 13 256-268 14-26 (36)
28 cd00821 PH Pleckstrin homology 32.5 1.6E+02 0.0034 19.8 5.2 59 185-252 21-79 (96)
29 PRK13708 plasmid maintenance p 32.3 62 0.0013 26.7 3.5 34 213-252 30-64 (101)
30 smart00028 TPR Tetratricopepti 32.0 41 0.00088 17.6 1.8 15 256-270 16-30 (34)
31 KOG3294 WW domain binding prot 31.3 27 0.00058 33.4 1.5 39 179-227 45-84 (261)
32 PF05553 DUF761: Cotton fibre 31.0 24 0.00053 24.6 0.9 21 107-127 3-23 (38)
33 KOG1032 Uncharacterized conser 30.4 24 0.00053 36.6 1.1 92 160-264 117-208 (590)
34 smart00671 SEL1 Sel1-like repe 28.0 52 0.0011 19.9 1.9 17 255-271 19-35 (36)
35 cd01244 PH_RasGAP_CG9209 RAS_G 24.0 76 0.0017 25.4 2.7 32 214-246 44-76 (98)
36 cd01239 PH_PKD Protein kinase 22.8 1.3E+02 0.0027 25.8 3.9 42 209-253 36-80 (117)
37 cd00851 MTH1175 This uncharact 22.5 2E+02 0.0043 21.4 4.6 39 214-256 2-41 (103)
38 KOG3088 Secretory carrier memb 22.5 3.3E+02 0.0071 26.9 7.0 24 95-118 69-92 (313)
39 PF04283 CheF-arch: Chemotaxis 22.1 1.4E+02 0.0031 27.2 4.3 36 178-227 23-58 (221)
40 PF04326 AAA_4: Divergent AAA 21.4 50 0.0011 25.4 1.1 32 154-189 7-41 (122)
41 PF08909 DUF1854: Domain of un 21.0 66 0.0014 27.8 1.9 37 235-271 17-55 (133)
42 PF10756 bPH_6: Bacterial PH d 20.5 93 0.002 22.9 2.4 36 214-254 19-54 (73)
No 1
>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A.
Probab=99.28 E-value=1.8e-12 Score=93.96 Aligned_cols=66 Identities=39% Similarity=0.596 Sum_probs=45.7
Q ss_pred eeeeccCCChHHHHhhhhcceeecCCCCeeeeEEeecceeeeecCCCcceecCCceeeeEEEEeeeccccccccC
Q 024061 153 IFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDETQWSYYKVVIPLSQLKAVNP 227 (273)
Q Consensus 153 iFkQ~F~v~~~EkLlKa~aCYLSTsaGPVaG~LfIST~kvAFCSDrpl~~~s~g~~~~~yYKVvIPL~kik~Vnp 227 (273)
-|++.|...++|+|...|.|+|..+.+|+.|.||||+.+|+|+|+....-. ++++|||..|..|..
T Consensus 2 ~f~~~F~lp~~E~li~~~~c~l~~~~~~~~G~LyiT~~~lcF~s~~~~~~~---------~~~~ipl~~I~~i~k 67 (69)
T PF02893_consen 2 KFRKLFKLPEEERLIEEYSCALFKSKIPVQGRLYITNNYLCFYSNKFGSKT---------CKFVIPLSDIKSIEK 67 (69)
T ss_dssp ---------TT--EEEEEEETTTEE---EEEEEEEESSEEEEEESSSSS-E----------EEEEEGGGEEEEEE
T ss_pred cccccccCCCCCeEEEEEEEEEECCccceeeEEEECCCEEEEEECCCCCce---------EEEEEEhHheeEEEE
Confidence 589999999999999999999999999999999999999999998664422 799999999998864
No 2
>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins.
Probab=99.05 E-value=1.1e-10 Score=82.86 Aligned_cols=59 Identities=46% Similarity=0.745 Sum_probs=50.8
Q ss_pred CChHHHHhhhhcceeecCCCCeeeeEEeecceeeeecCCCcceecCCceeeeEEEEeeeccccccccCC
Q 024061 160 TVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDETQWSYYKVVIPLSQLKAVNPS 228 (273)
Q Consensus 160 v~~~EkLlKa~aCYLSTsaGPVaG~LfIST~kvAFCSDrpl~~~s~g~~~~~yYKVvIPL~kik~Vnps 228 (273)
..++|+|...|.|+|+ +.+|+.|.||||+.+|+|+|+.+-... .+++|||+.|.+|+..
T Consensus 2 l~~~E~l~~~~~C~l~-~~~~~~G~lyiT~~~l~F~S~~~~~~~---------~~~~ipl~~I~~i~k~ 60 (61)
T smart00568 2 LPEEEKLIADYSCYLS-RDGPVQGRLYISNYRLCFRSDLPGKLT---------PKVVIPLADITRIEKS 60 (61)
T ss_pred cCCCcEEEEEEEeEEC-CCccccEEEEEECCEEEEEccCCCCee---------EEEEEEHHHeeEEEEC
Confidence 4689999999999999 669999999999999999997664422 2999999999998753
No 3
>PF14470 bPH_3: Bacterial PH domain
Probab=95.26 E-value=0.094 Score=39.07 Aligned_cols=94 Identities=15% Similarity=0.157 Sum_probs=65.3
Q ss_pred ChHHHHhhhhcceeecCCCCeeeeEEeecceeeeecCCCcceecCCceeeeEEEEeeeccccccccCCCCCCCCcCceEE
Q 024061 161 VPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDETQWSYYKVVIPLSQLKAVNPSTSKAKPAEKYIQ 240 (273)
Q Consensus 161 ~~~EkLlKa~aCYLSTsaGPVaG~LfIST~kvAFCSDrpl~~~s~g~~~~~yYKVvIPL~kik~Vnps~n~~nPseKYIq 240 (273)
.+||+.+-...|.+-...+.-.|+|+++++||-||+-..+. + .....||+++|.+|+-.... --..|.
T Consensus 2 ~~~E~I~~~~~~~~~~~~~~~~g~l~~TnkRlif~~~~~~~----~-----~~~~~i~y~~I~~v~~~~g~---~~~~i~ 69 (96)
T PF14470_consen 2 KEDEEIEYVAVGSYNYFFTSFPGVLVLTNKRLIFYSKGMFG----G-----KKFESIPYDDITSVSFKKGI---LGGKIT 69 (96)
T ss_pred cCCCEEEEEEEEEEeecccCceeEEEEeCCEEEEEEcccCC----C-----ceEEEEEhhheEEEEEEccc---cccEEE
Confidence 46888888888887766778899999999999999874321 1 12589999999999987333 446799
Q ss_pred EEEecCceeeeeeeccHHHHHHHHHHhhC
Q 024061 241 VISVDNHEFWFMGFVHYDSAVKNLLGALG 269 (273)
Q Consensus 241 IVTvD~~EFWFMGFvnYdKA~k~Lq~Al~ 269 (273)
|.| ++..+ =++.+. .+-++-+-+.|+
T Consensus 70 i~~-~~~~~-~i~~i~-k~~~~~~~~~i~ 95 (96)
T PF14470_consen 70 IET-NGEKI-KIDNIQ-KGDVKEFYEYIK 95 (96)
T ss_pred EEE-CCEEE-EEEEcC-HHHHHHHHHHHh
Confidence 988 44444 445443 333344444443
No 4
>PF08498 Sterol_MT_C: Sterol methyltransferase C-terminal; InterPro: IPR013705 This domain is found to the C terminus of a methyltransferase domain (IPR013216 from INTERPRO) in fungal and plant sterol methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006694 steroid biosynthetic process
Probab=80.72 E-value=1.6 Score=33.61 Aligned_cols=52 Identities=19% Similarity=0.240 Sum_probs=42.3
Q ss_pred HhhhhhhhHHHhHhhhhhhhhhhhhcccCCChHHHHHhhhhhhhhhhhcCCcceeeeec
Q 024061 99 LSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKVLAEGGYEKIFRQS 157 (273)
Q Consensus 99 ~~~~gkk~~eatrKae~~a~~iw~Hlk~gpsisdta~GKlslGaKil~eGG~ekiFkQ~ 157 (273)
+++|||. .-...=++-|-|++.|+=+-.+.--|..+|.-|.+||-++||--.
T Consensus 7 ~t~~Gr~-------~t~~~v~~LE~lglAPkGt~~v~~~L~~aa~~Lv~GG~~giFTPM 58 (67)
T PF08498_consen 7 MTWLGRF-------ITHALVRVLEFLGLAPKGTSKVAEMLAKAADGLVEGGKTGIFTPM 58 (67)
T ss_pred ccHHHHH-------HHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHHHHHhhhcCCcCch
Confidence 6778884 333344566889999999999999999999999999999999643
No 5
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=80.08 E-value=1.8 Score=45.48 Aligned_cols=96 Identities=22% Similarity=0.266 Sum_probs=74.7
Q ss_pred eccCCChHHHHhhhhcceeecCCC--CeeeeEEeecceeeeecCCCcceecCCceeeeEEEEeeeccccccccCCCCCCC
Q 024061 156 QSFDTVPEEQLLKTYACYLSTSAG--PVVGVLYLSTAKLAFCSDDPLSYKVGDETQWSYYKVVIPLSQLKAVNPSTSKAK 233 (273)
Q Consensus 156 Q~F~v~~~EkLlKa~aCYLSTsaG--PVaG~LfIST~kvAFCSDrpl~~~s~g~~~~~yYKVvIPL~kik~Vnps~n~~n 233 (273)
-.|... |+|--.-.|=|-|..- =..|-||+||..++|.||-+=. -.+++||.-|+.|.-.. ..+
T Consensus 14 ~~Frlp--e~l~~~~~~~l~~p~s~~~~~G~l~~s~~f~cF~s~~~~~-----------c~~~~Pl~~vr~ve~~~-~ss 79 (671)
T KOG4347|consen 14 AFFRLP--EKLDGSTMCNLWTPYSRYHEQGRLFLSTNFICFASDTEWL-----------CSFITPLLAVRSVERLD-DSS 79 (671)
T ss_pred ceeecc--hhcCceeecccCCCcchhhccceeeeccceEEeecCCccc-----------ceEeeehhhhhhhhccC-ccc
Confidence 455555 9999999999999866 5889999999999999997643 26899999999998764 222
Q ss_pred CcCceEEEEEecCceeeeeeeccHHHHHHHHH
Q 024061 234 PAEKYIQVISVDNHEFWFMGFVHYDSAVKNLL 265 (273)
Q Consensus 234 PseKYIqIVTvD~~EFWFMGFvnYdKA~k~Lq 265 (273)
--..=|-+.|-.+..|-|-|+..=++.+.-+.
T Consensus 80 ~~~~~i~~~~~~~~~~~f~~~~~r~~~~~k~~ 111 (671)
T KOG4347|consen 80 LFTQLISLFTSNMVGMRFGGLTERLKLLSKLH 111 (671)
T ss_pred cchhhhHHhhcCcceEEecchhhHHHHHHHHh
Confidence 22333667888999999999887777765544
No 6
>PF06576 DUF1133: Protein of unknown function (DUF1133); InterPro: IPR010557 This family consists of a number of hypothetical proteins from Escherichia coli O157:H7 and Salmonella typhi. The function of this family is unknown.
Probab=76.01 E-value=2.2 Score=38.42 Aligned_cols=81 Identities=28% Similarity=0.480 Sum_probs=55.6
Q ss_pred chHHH--HHHHHhhhhhhhHHHhHhhhhhhhhhhhhcccCCChHHHHHhhhhhhhhhhhcCCcceeeeeccCCChHHHHh
Q 024061 90 NKLES--VKGALSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLL 167 (273)
Q Consensus 90 ~~~~~--v~~~~~~~gkk~~eatrKae~~a~~iw~Hlk~gpsisdta~GKlslGaKil~eGG~ekiFkQ~F~v~~~EkLl 167 (273)
++.|+ |...|+-|||- .--.-.-++|++..|-.+++++.|+. .+--+=|.+-|+++ +.|.
T Consensus 17 ~tle~vWiqgkLrmWGRw----syiggG~~g~mfnqLl~s~kitKtaI---~~aLr~mkKsGi~k-----------~EL~ 78 (176)
T PF06576_consen 17 RTLESVWIQGKLRMWGRW----SYIGGGKGGNMFNQLLASKKITKTAI---NEALRRMKKSGISK-----------PELE 78 (176)
T ss_pred hHHHHHHHHHHHHhhhee----ecccCCchhhHHHHHHhcccccHHHH---HHHHHHHHHhcCCc-----------HHHH
Confidence 56666 57888889883 22345567899999999999997654 33334455556554 7788
Q ss_pred hhhcceeecCCCCeeeeEEeecceeeeecCC
Q 024061 168 KTYACYLSTSAGPVVGVLYLSTAKLAFCSDD 198 (273)
Q Consensus 168 Ka~aCYLSTsaGPVaG~LfIST~kvAFCSDr 198 (273)
.-+.|+|.--.= |+ +|||+|-
T Consensus 79 ~~~~eil~gK~k--------S~--La~ctD~ 99 (176)
T PF06576_consen 79 AFLREILNGKQK--------SW--LAFCTDD 99 (176)
T ss_pred HHHHHHhCcccc--------cc--cceecch
Confidence 888888864321 22 8999983
No 7
>PF14844 PH_BEACH: PH domain associated with Beige/BEACH; PDB: 1MI1_B 1T77_C.
Probab=75.15 E-value=2.8 Score=32.57 Aligned_cols=84 Identities=19% Similarity=0.305 Sum_probs=53.4
Q ss_pred HhhhhcceeecCCCCeeeeEEeecceeeeecCCCcceec--CC---ceeeeEEEEeeeccccccccCCCCCCCCcCceEE
Q 024061 166 LLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKV--GD---ETQWSYYKVVIPLSQLKAVNPSTSKAKPAEKYIQ 240 (273)
Q Consensus 166 LlKa~aCYLSTsaGPVaG~LfIST~kvAFCSDrpl~~~s--~g---~~~~~yYKVvIPL~kik~Vnps~n~~nPseKYIq 240 (273)
++-++.|-+=|.-+-+.|+|.|++..+-|..|..-.... .. ......--..+|+.+|+.|-..--.. .+-=||
T Consensus 2 i~~s~~c~~I~~~~~~~G~l~i~~~~i~F~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~I~~v~~RRyll--r~~AlE 79 (106)
T PF14844_consen 2 ILLSVPCELITPLDSIPGTLIITKSSIYFIPNDNSSENKISSENPSISISKPKSKRWPLSDIKEVHKRRYLL--RDTALE 79 (106)
T ss_dssp -SEEEEEEEEETTEEEEEEEEE-SSEEEEEE--TTSHHHHCS-HHHHCC---TCEEEEGGGEEEEEEEEETT--EEEEEE
T ss_pred EEEEEEEEEEEeeeeEEEEEEEeCCEEEEEECCcccccccccccccccccCCceEEEEHHHhHHHHHHHhcC--cceEEE
Confidence 445678999999999999999999999999982221110 00 11112224568999999998742222 233489
Q ss_pred EEEecCceeee
Q 024061 241 VISVDNHEFWF 251 (273)
Q Consensus 241 IVTvD~~EFWF 251 (273)
|.+.||.-|.|
T Consensus 80 iF~~dg~s~f~ 90 (106)
T PF14844_consen 80 IFFSDGRSYFF 90 (106)
T ss_dssp EEETTS-EEEE
T ss_pred EEEcCCcEEEE
Confidence 99999998754
No 8
>PF07289 DUF1448: Protein of unknown function (DUF1448); InterPro: IPR006606 This entry represents the Bardet-Biedl syndrome 5 protein (BBL5). It consists of eukaryotic proteins of around 375 residues in length.
Probab=67.19 E-value=4.1 Score=39.89 Aligned_cols=83 Identities=24% Similarity=0.459 Sum_probs=60.5
Q ss_pred ccCCChHHHHhhhhc--ceeecCCCCeeeeEEeecceeeeecCCCcceecCCceeeeEEEEeeeccccccccCCCCCCCC
Q 024061 157 SFDTVPEEQLLKTYA--CYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDETQWSYYKVVIPLSQLKAVNPSTSKAKP 234 (273)
Q Consensus 157 ~F~v~~~EkLlKa~a--CYLSTsaGPVaG~LfIST~kvAFCSDrpl~~~s~g~~~~~yYKVvIPL~kik~Vnps~n~~nP 234 (273)
.+-+.|+|++..... +=||+--|=+ |++||++-||..|+|---.| .|.||.=+|+++.-..++.-+
T Consensus 148 ~L~lLp~E~v~~~~~gVwnls~dqGnL-GtfivTNvRiVW~A~~ne~f-----------NVSiPylqi~~i~ir~SKfG~ 215 (339)
T PF07289_consen 148 QLKLLPQEQVYSRVNGVWNLSSDQGNL-GTFIVTNVRIVWFADMNESF-----------NVSIPYLQIKSIRIRDSKFGP 215 (339)
T ss_pred eEeeCCccEEeeccCCEEEcccCCCce-eEEEEeeeEEEEEccCCccc-----------cccchHhhheeeeeeccccce
Confidence 345678887777766 8889888877 99999999999999976554 599999999999877665444
Q ss_pred cCceEEEEEecCceeeeeee
Q 024061 235 AEKYIQVISVDNHEFWFMGF 254 (273)
Q Consensus 235 seKYIqIVTvD~~EFWFMGF 254 (273)
+ +-|-|....-=.-.||
T Consensus 216 a---LVieT~~~sGgYVLGF 232 (339)
T PF07289_consen 216 A---LVIETSESSGGYVLGF 232 (339)
T ss_pred E---EEEEEeccCCcEEEEE
Confidence 3 3344444433344555
No 9
>PF08567 TFIIH_BTF_p62_N: TFIIH p62 subunit, N-terminal domain; InterPro: IPR013876 The N-terminal region of the TFIIH basal transcription factor complex p62 subunit (BTF2-p62) forms an interaction with the 3' endonuclease XPG, which is essential for activity. The 3' endonuclease XPG is a major component of the nucleotide excision repair machinery. The structure of the N-terminal region reveals that it adopts a pleckstrin homology (PH) fold [, ]. ; PDB: 1Y5O_A 2LOX_A 2GS0_A 2L2I_A 2K2U_A 1PFJ_A 2RNR_B.
Probab=65.00 E-value=29 Score=26.91 Aligned_cols=54 Identities=22% Similarity=0.412 Sum_probs=35.5
Q ss_pred eeeeEEeecce--eeeecCCCcceecCCceeeeEEEEeeeccccccccCCCCCCCCcCceEEEEEecC
Q 024061 181 VVGVLYLSTAK--LAFCSDDPLSYKVGDETQWSYYKVVIPLSQLKAVNPSTSKAKPAEKYIQVISVDN 246 (273)
Q Consensus 181 VaG~LfIST~k--vAFCSDrpl~~~s~g~~~~~yYKVvIPL~kik~Vnps~n~~nPseKYIqIVTvD~ 246 (273)
+.|+|+|+..+ +.+.-+ +.+... .|.||+..|+.-..+ .+..+.==++|+-.|+
T Consensus 12 ~~G~L~l~~d~~~~~W~~~------~~~~~~----~v~i~~~~I~~lq~S--p~~s~Kv~Lki~~~~~ 67 (79)
T PF08567_consen 12 KDGTLTLTEDRKPLEWTPK------ASDGPS----TVSIPLNDIKNLQQS--PEGSPKVMLKIVLKDD 67 (79)
T ss_dssp EEEEEEEETTCSSEEEEEC------CSSSSS----EEEEETTTEEEEEE----TTSSTEEEEEEETTS
T ss_pred CCcEEEEecCCceEEEeec------CCCCCc----eEEEEHHHhhhhccC--CCCCcceEEEEEEecC
Confidence 35999999877 655432 111111 699999999987664 4555566788888776
No 10
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=63.28 E-value=4.2 Score=34.31 Aligned_cols=21 Identities=33% Similarity=0.689 Sum_probs=18.5
Q ss_pred CCCCcCceEEEEEecCceeee
Q 024061 231 KAKPAEKYIQVISVDNHEFWF 251 (273)
Q Consensus 231 ~~nPseKYIqIVTvD~~EFWF 251 (273)
-+-|+++|+.+|+-|+|||-.
T Consensus 11 ~egp~~~yVkLvS~Ddhefii 31 (112)
T KOG3473|consen 11 CEGPDSMYVKLVSSDDHEFII 31 (112)
T ss_pred ccCcchhheEeecCCCcEEEE
Confidence 467899999999999999964
No 11
>smart00683 DM16 Repeats in sea squirt COS41.4, worm R01H10.6, fly CG1126 etc.
Probab=55.84 E-value=15 Score=27.39 Aligned_cols=37 Identities=22% Similarity=0.486 Sum_probs=28.6
Q ss_pred CCCeeeeEEeecceeeeecCCCcceecCCceeeeEEEEeeecccccccc
Q 024061 178 AGPVVGVLYLSTAKLAFCSDDPLSYKVGDETQWSYYKVVIPLSQLKAVN 226 (273)
Q Consensus 178 aGPVaG~LfIST~kvAFCSDrpl~~~s~g~~~~~yYKVvIPL~kik~Vn 226 (273)
.| -.|+|+|++-|+-..|+.--. +.|.||.-+|..++
T Consensus 17 ~G-~~G~l~VTNlRiiW~s~~~~~-----------~NlSIgy~~i~~i~ 53 (55)
T smart00683 17 NG-DLGVFFVTNLRLVWHSDTNPR-----------FNISVGYLQITNVR 53 (55)
T ss_pred CC-CeeEEEEEeeEEEEEeCCCCc-----------eEEEEcceeEEEEE
Confidence 45 459999999999999987644 45778877776653
No 12
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=54.86 E-value=61 Score=22.05 Aligned_cols=61 Identities=13% Similarity=0.125 Sum_probs=36.4
Q ss_pred EeecceeeeecCCCcceecCCceeeeEEEEeeeccccccccCCCCCC-CCcCceEEEEEecCceeeeeee
Q 024061 186 YLSTAKLAFCSDDPLSYKVGDETQWSYYKVVIPLSQLKAVNPSTSKA-KPAEKYIQVISVDNHEFWFMGF 254 (273)
Q Consensus 186 fIST~kvAFCSDrpl~~~s~g~~~~~yYKVvIPL~kik~Vnps~n~~-nPseKYIqIVTvD~~EFWFMGF 254 (273)
++....+.||++.+-.. .....-.|||..+ .|....+.. .+..-.+.|++-++..|.|..-
T Consensus 24 ~L~~~~l~~~~~~~~~~-------~~~~~~~i~l~~~-~v~~~~~~~~~~~~~~f~l~~~~~~~~~f~~~ 85 (102)
T smart00233 24 VLFNSTLLYYKSEKAKK-------DYKPKGSIDLSGI-TVREAPDPDSAKKPHCFEIKTADRRSYLLQAE 85 (102)
T ss_pred EEECCEEEEEeCCCccc-------cCCCceEEECCcC-EEEeCCCCccCCCceEEEEEecCCceEEEEcC
Confidence 33445555555544311 1455778999998 444443322 3556778888877778888753
No 13
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=53.62 E-value=42 Score=23.68 Aligned_cols=61 Identities=21% Similarity=0.280 Sum_probs=39.8
Q ss_pred eeeecCCCcceec-CCceeeeEEEEeeeccccccccCCCCC----CCCcCceEEEEEecCceeeeee
Q 024061 192 LAFCSDDPLSYKV-GDETQWSYYKVVIPLSQLKAVNPSTSK----AKPAEKYIQVISVDNHEFWFMG 253 (273)
Q Consensus 192 vAFCSDrpl~~~s-~g~~~~~yYKVvIPL~kik~Vnps~n~----~nPseKYIqIVTvD~~EFWFMG 253 (273)
.++-.+.-|.|.. ........++-+|+|..+ .|.+..+. ..+.+..++|++.++-.|+|..
T Consensus 21 ~~vL~~~~L~~~~~~~~~~~~~~~~~i~l~~~-~v~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~ 86 (104)
T PF00169_consen 21 YFVLRDSYLLYYKSSKDKSDSKPKGSIPLDDC-TVRPDPSSDFLSNKKRKNCFEITTPNGKSYLFSA 86 (104)
T ss_dssp EEEEETTEEEEESSTTTTTESSESEEEEGTTE-EEEEETSSTSTSTSSSSSEEEEEETTSEEEEEEE
T ss_pred EEEEECCEEEEEecCccccceeeeEEEEecCc-eEEEcCccccccccCCCcEEEEEeCCCcEEEEEc
Confidence 3333444444332 332344567889999999 66666665 4778888899888887887764
No 14
>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=50.15 E-value=11 Score=40.12 Aligned_cols=64 Identities=25% Similarity=0.412 Sum_probs=46.6
Q ss_pred eeeccCCChHHHHhhhhcceeecCCCCeeeeEEeecceeeeecCCCcceecCCceeeeEEEEeeeccccccccCCC
Q 024061 154 FRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDETQWSYYKVVIPLSQLKAVNPST 229 (273)
Q Consensus 154 FkQ~F~v~~~EkLlKa~aCYLSTsaGPVaG~LfIST~kvAFCSDrpl~~~s~g~~~~~yYKVvIPL~kik~Vnps~ 229 (273)
..--|...+||.+..-- |..-=.|++.|+|.||+-|+=|-|.-. +.+|-+-|||.-|.+|+--.
T Consensus 30 ~~~~~~~L~GE~i~~~~--y~c~f~G~~~g~l~lsNyRl~fks~~t----------~~~~~~~VPLg~Ie~vek~~ 93 (717)
T KOG4471|consen 30 LQVPFPLLPGESIIDEK--YICPFLGAVDGTLALSNYRLYFKSKET----------DPPFVLDVPLGVIERVEKRG 93 (717)
T ss_pred ccCcccccCCcccccce--ecccccccccceEEeeeeEEEEEeccC----------CCceeEeechhhhhhhhhcC
Confidence 35567889999874222 444456899999999999998876422 22678889999888887643
No 15
>TIGR02681 phage_pRha phage regulatory protein, rha family. Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that pRha is a phage regulatory protein.
Probab=46.73 E-value=19 Score=29.49 Aligned_cols=30 Identities=13% Similarity=0.233 Sum_probs=26.7
Q ss_pred EEecCceeeeeee---------ccHHHHHHHHHHhhCCC
Q 024061 242 ISVDNHEFWFMGF---------VHYDSAVKNLLGALGPR 271 (273)
Q Consensus 242 VTvD~~EFWFMGF---------vnYdKA~k~Lq~Al~~~ 271 (273)
+|-||+.+--||| ..|-++|+-+++.|+++
T Consensus 69 ltkdgf~lLvmg~tg~ka~~fK~~yI~~Fn~ME~~l~~~ 107 (108)
T TIGR02681 69 LTEDGFTIVAMGYTTPKAMKMKEKFIKEFNEMKEHLQKV 107 (108)
T ss_pred EcCCceEEEEecCChHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4999999999999 46899999999999865
No 16
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=44.88 E-value=8.7 Score=39.79 Aligned_cols=37 Identities=38% Similarity=0.648 Sum_probs=31.7
Q ss_pred hhcccCCChHHHHHh--hhhhhhhhhhcCCcceeeeecc
Q 024061 122 QHLKTGPSLADAAVG--RIAQRTKVLAEGGYEKIFRQSF 158 (273)
Q Consensus 122 ~Hlk~gpsisdta~G--KlslGaKil~eGG~ekiFkQ~F 158 (273)
|.+|.-|+|+....| +|..|||.|-|||+.+|=|-.|
T Consensus 345 Qk~K~hP~i~~vleGgk~i~YgARaLNEGGfQsiPkl~F 383 (621)
T KOG2415|consen 345 QKMKHHPSISKVLEGGKRIAYGARALNEGGFQSIPKLVF 383 (621)
T ss_pred HHhhcCcchhhhhcCcceeeehhhhhccCCcccCccccc
Confidence 447778999998886 7999999999999999887666
No 17
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=41.04 E-value=17 Score=26.22 Aligned_cols=14 Identities=36% Similarity=0.707 Sum_probs=11.9
Q ss_pred ceEEEEEecCceee
Q 024061 237 KYIQVISVDNHEFW 250 (273)
Q Consensus 237 KYIqIVTvD~~EFW 250 (273)
+||.++|-||++|=
T Consensus 1 ~~v~L~SsDg~~f~ 14 (62)
T PF03931_consen 1 MYVKLVSSDGQEFE 14 (62)
T ss_dssp -EEEEEETTSEEEE
T ss_pred CEEEEEcCCCCEEE
Confidence 68999999999983
No 18
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=39.98 E-value=24 Score=21.42 Aligned_cols=14 Identities=29% Similarity=0.432 Sum_probs=12.0
Q ss_pred cHHHHHHHHHHhhC
Q 024061 256 HYDSAVKNLLGALG 269 (273)
Q Consensus 256 nYdKA~k~Lq~Al~ 269 (273)
+|++|++++++||+
T Consensus 16 ~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 16 DYEEALEYYQRALE 29 (34)
T ss_dssp -HHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHH
Confidence 68999999999985
No 19
>PF11605 Vps36_ESCRT-II: Vacuolar protein sorting protein 36 Vps36; InterPro: IPR021648 Vps36 is a subunit of ESCRT-II, a protein involved in driving protein sorting from endosomes to lysosomes. The GLUE domain of Vps36 allows for a tight interaction to occur between the protein and Vps28, a subunit of ESCRT-I. This interaction is critical for ubiquitinated cargo progression from early to late endosomes []. ; PDB: 2HTH_B 2DX5_A 2CAY_B.
Probab=39.52 E-value=36 Score=27.08 Aligned_cols=47 Identities=28% Similarity=0.401 Sum_probs=29.9
Q ss_pred eeeeEEeecceeeeecCCCcceecCCceeeeEEEEeeeccccccccCCCCCCCCcCc
Q 024061 181 VVGVLYLSTAKLAFCSDDPLSYKVGDETQWSYYKVVIPLSQLKAVNPSTSKAKPAEK 237 (273)
Q Consensus 181 VaG~LfIST~kvAFCSDrpl~~~s~g~~~~~yYKVvIPL~kik~Vnps~n~~nPseK 237 (273)
--|.||++|.||.+--|.-..- .-+.|||..|..+.-....-+.+-|
T Consensus 36 q~G~l~LTsHRliw~d~~~~~~----------~s~~l~L~~i~~~e~~~gf~~sSpK 82 (89)
T PF11605_consen 36 QNGRLYLTSHRLIWVDDSDPSK----------HSIALPLSLISHIEYSAGFLKSSPK 82 (89)
T ss_dssp SCEEEEEESSEEEEEESSGHCH----------H-EEEEGGGEEEEEEE-STTSSS-E
T ss_pred cCCEEEEEeeEEEEEcCCCCce----------eEEEEEchHeEEEEEEccccCCCCe
Confidence 4799999999999875443210 2478899888887554444444433
No 20
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=39.38 E-value=25 Score=20.93 Aligned_cols=14 Identities=29% Similarity=0.498 Sum_probs=11.9
Q ss_pred cHHHHHHHHHHhhC
Q 024061 256 HYDSAVKNLLGALG 269 (273)
Q Consensus 256 nYdKA~k~Lq~Al~ 269 (273)
+|++|.+++++|++
T Consensus 16 ~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 16 NYEEAIEYFEKALE 29 (34)
T ss_dssp -HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 68999999999985
No 21
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=36.11 E-value=24 Score=21.91 Aligned_cols=17 Identities=24% Similarity=0.163 Sum_probs=14.1
Q ss_pred cHHHHHHHHHHhhCCCC
Q 024061 256 HYDSAVKNLLGALGPRS 272 (273)
Q Consensus 256 nYdKA~k~Lq~Al~~~~ 272 (273)
++++|+++|++|..+++
T Consensus 23 d~~~A~~~~~~Aa~~g~ 39 (39)
T PF08238_consen 23 DYEKAFKWYEKAAEQGH 39 (39)
T ss_dssp HHHHHHHHHHHHHHTT-
T ss_pred cccchHHHHHHHHHccC
Confidence 68999999999987663
No 22
>PF01845 CcdB: CcdB protein; InterPro: IPR002712 CcdB protein is a topoisomerase poison from Escherichia coli []. It is responsible for killing plasmid-free segregants, and interferes with the activity of DNA gyrase. It acts to inhibit partitioning of the chromosomal DNA.; GO: 0008657 DNA topoisomerase (ATP-hydrolyzing) inhibitor activity, 0006276 plasmid maintenance; PDB: 2VUB_G 1VUB_D 3VUB_A 1X75_C 3HPW_B 4VUB_A 4ELZ_D 2KMT_B 4ELY_C 3JRZ_A ....
Probab=34.82 E-value=59 Score=26.57 Aligned_cols=35 Identities=23% Similarity=0.530 Sum_probs=24.5
Q ss_pred EEEEeeecccccccc-CCCCCCCCcCceEEEEEecCceeeee
Q 024061 212 YYKVVIPLSQLKAVN-PSTSKAKPAEKYIQVISVDNHEFWFM 252 (273)
Q Consensus 212 yYKVvIPL~kik~Vn-ps~n~~nPseKYIqIVTvD~~EFWFM 252 (273)
...|||||-...... +...+-|| ++++||.+|-.|
T Consensus 30 ~tRvVvPL~~~~~~~~~~~~~L~P------~~~i~g~~~vl~ 65 (102)
T PF01845_consen 30 NTRVVVPLLPLSNLPGKPPRRLNP------VFEIEGEDYVLM 65 (102)
T ss_dssp SEEEEEEEEEGGGTSSTS-TTTS-------EEEETTEEEEE-
T ss_pred CcEEEEecCchhhcCcccCCceee------EEEECCEEEEEE
Confidence 458999999888775 44444444 799999998754
No 23
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=34.18 E-value=35 Score=20.53 Aligned_cols=14 Identities=29% Similarity=0.449 Sum_probs=12.3
Q ss_pred cHHHHHHHHHHhhC
Q 024061 256 HYDSAVKNLLGALG 269 (273)
Q Consensus 256 nYdKA~k~Lq~Al~ 269 (273)
+|++|+++|+++++
T Consensus 16 ~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 16 DYEEALEYFEKALE 29 (34)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh
Confidence 68999999999874
No 24
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=33.55 E-value=1.4e+02 Score=20.26 Aligned_cols=65 Identities=17% Similarity=0.161 Sum_probs=39.7
Q ss_pred CCeeeeEEeecceeeeecCCCcceecCCceeeeEEEEeeeccccccccCCCCCCCCcCceEEEEEec--Cceeeeeee
Q 024061 179 GPVVGVLYLSTAKLAFCSDDPLSYKVGDETQWSYYKVVIPLSQLKAVNPSTSKAKPAEKYIQVISVD--NHEFWFMGF 254 (273)
Q Consensus 179 GPVaG~LfIST~kvAFCSDrpl~~~s~g~~~~~yYKVvIPL~kik~Vnps~n~~nPseKYIqIVTvD--~~EFWFMGF 254 (273)
..--..++|+...+-++++..-..... -++||..+. |....... -...-++|++.+ +..++|.--
T Consensus 18 ~w~~~~~~l~~~~l~~~~~~~~~~~~~---------~~~~l~~~~-v~~~~~~~-~~~~~F~i~~~~~~~~~~~~~~~ 84 (99)
T cd00900 18 RWKRRWFFLFDDGLLLYKSDDKKEIKP---------GSIPLSEIS-VEEDPDGS-DDPNCFAIVTKDRGRRVFVFQAD 84 (99)
T ss_pred CceeeEEEEECCEEEEEEcCCCCcCCC---------CEEEccceE-EEECCCCC-CCCceEEEECCCCCcEEEEEEcC
Confidence 344455677777777777765432211 568888888 66653322 234677888886 777777543
No 25
>PF12068 DUF3548: Domain of unknown function (DUF3548); InterPro: IPR021935 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes and is typically between 184 to 216 amino acids in length. The domain is found associated with PF00566 from PFAM and at the N terminus of GYP7 proteins.
Probab=33.47 E-value=42 Score=30.76 Aligned_cols=57 Identities=26% Similarity=0.339 Sum_probs=38.1
Q ss_pred eeeeEEEEeeeccccccccCCCCCCCCcCceEEEEEecCceeeeeeeccHHHHHHHHHHhh
Q 024061 208 TQWSYYKVVIPLSQLKAVNPSTSKAKPAEKYIQVISVDNHEFWFMGFVHYDSAVKNLLGAL 268 (273)
Q Consensus 208 ~~~~yYKVvIPL~kik~Vnps~n~~nPseKYIqIVTvD~~EFWFMGFvnYdKA~k~Lq~Al 268 (273)
..++.|.+.|||..|+++.-+.... .-.||.|+|-||.-| =-+--++.-.+.|-++|
T Consensus 107 ~~~~~~aFsv~lsdl~Si~~~~p~~--G~~~lv~~~kdG~~~--p~L~Fh~gg~~~fl~~L 163 (213)
T PF12068_consen 107 SSRSSYAFSVPLSDLKSIRVSKPSL--GWWYLVFILKDGTSL--PPLHFHDGGSKEFLKSL 163 (213)
T ss_pred CCCcceEEEEEhhheeeEEecCCCC--CceEEEEEecCCCcc--CceEEecCCHHHHHHHH
Confidence 3467889999999999998843222 668999999999654 33333444444444443
No 26
>PF10882 bPH_5: Bacterial PH domain; InterPro: IPR020482 This entry contains membrane proteins with no known function.
Probab=33.34 E-value=35 Score=26.03 Aligned_cols=25 Identities=24% Similarity=0.615 Sum_probs=20.7
Q ss_pred eeeeEEEEeeeccccccccCCCCCC
Q 024061 208 TQWSYYKVVIPLSQLKAVNPSTSKA 232 (273)
Q Consensus 208 ~~~~yYKVvIPL~kik~Vnps~n~~ 232 (273)
..|..+++.||+++|..|....+..
T Consensus 12 I~~~~~~~~Ip~~~I~~v~~~~~~~ 36 (100)
T PF10882_consen 12 IRWPFGKITIPLAEIESVELVDDLP 36 (100)
T ss_pred EEEccccEEEEHHHcEEEEeccccC
Confidence 4677889999999999998876554
No 27
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=32.73 E-value=36 Score=21.72 Aligned_cols=13 Identities=31% Similarity=0.486 Sum_probs=10.9
Q ss_pred cHHHHHHHHHHhh
Q 024061 256 HYDSAVKNLLGAL 268 (273)
Q Consensus 256 nYdKA~k~Lq~Al 268 (273)
+|++|+.+++++|
T Consensus 14 ~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 14 DYEKAIEYYEQAL 26 (36)
T ss_dssp -HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 6999999999965
No 28
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=32.50 E-value=1.6e+02 Score=19.82 Aligned_cols=59 Identities=17% Similarity=0.182 Sum_probs=33.7
Q ss_pred EEeecceeeeecCCCcceecCCceeeeEEEEeeeccccccccCCCCCCCCcCceEEEEEecCceeeee
Q 024061 185 LYLSTAKLAFCSDDPLSYKVGDETQWSYYKVVIPLSQLKAVNPSTSKAKPAEKYIQVISVDNHEFWFM 252 (273)
Q Consensus 185 LfIST~kvAFCSDrpl~~~s~g~~~~~yYKVvIPL~kik~Vnps~n~~nPseKYIqIVTvD~~EFWFM 252 (273)
+++....+.+|++.+-.. ....+-+|+|.. ..|....+.. ..+..++|++.++..|.|.
T Consensus 21 ~~L~~~~l~~~~~~~~~~-------~~~~~~~i~l~~-~~v~~~~~~~-~~~~~f~i~~~~~~~~~~~ 79 (96)
T cd00821 21 FVLFNDLLLYYKKKSSKK-------SYKPKGSIPLSG-AEVEESPDDS-GRKNCFEIRTPDGRSYLLQ 79 (96)
T ss_pred EEEECCEEEEEECCCCCc-------CCCCcceEEcCC-CEEEECCCcC-CCCcEEEEecCCCcEEEEE
Confidence 444455666665554321 223456777777 3333322211 3568888888887888886
No 29
>PRK13708 plasmid maintenance protein CcdB; Provisional
Probab=32.29 E-value=62 Score=26.75 Aligned_cols=34 Identities=21% Similarity=0.516 Sum_probs=25.4
Q ss_pred EEEeeeccccccccCCC-CCCCCcCceEEEEEecCceeeee
Q 024061 213 YKVVIPLSQLKAVNPST-SKAKPAEKYIQVISVDNHEFWFM 252 (273)
Q Consensus 213 YKVvIPL~kik~Vnps~-n~~nPseKYIqIVTvD~~EFWFM 252 (273)
-+|||||-......... .+-|| ++++||.+|-.|
T Consensus 30 tRvViPL~~~~~~~~~~~~rL~P------~~~I~g~~~vl~ 64 (101)
T PRK13708 30 RRMVIPLASARLLSDKVSRELYP------VVHIGDESYRLM 64 (101)
T ss_pred ceEEEeCccHHHCCCCcCCCcCc------eEEECCeEEEEE
Confidence 37999999888777644 33444 788999999754
No 30
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=32.02 E-value=41 Score=17.57 Aligned_cols=15 Identities=33% Similarity=0.368 Sum_probs=12.5
Q ss_pred cHHHHHHHHHHhhCC
Q 024061 256 HYDSAVKNLLGALGP 270 (273)
Q Consensus 256 nYdKA~k~Lq~Al~~ 270 (273)
+|++|..++++++..
T Consensus 16 ~~~~a~~~~~~~~~~ 30 (34)
T smart00028 16 DYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHcc
Confidence 588999999998863
No 31
>KOG3294 consensus WW domain binding protein WBP-2, contains GRAM domain [Signal transduction mechanisms]
Probab=31.27 E-value=27 Score=33.37 Aligned_cols=39 Identities=31% Similarity=0.657 Sum_probs=27.2
Q ss_pred CCeeeeEEeecceeeeecCCCcc-eecCCceeeeEEEEeeeccccccccC
Q 024061 179 GPVVGVLYLSTAKLAFCSDDPLS-YKVGDETQWSYYKVVIPLSQLKAVNP 227 (273)
Q Consensus 179 GPVaG~LfIST~kvAFCSDrpl~-~~s~g~~~~~yYKVvIPL~kik~Vnp 227 (273)
|=--|+|||++.||-|-|+.+-. |. -.++|+.-|+.++-
T Consensus 45 g~kkGtlyLTs~RiIFis~~~~D~fk----------sF~MPf~~mkd~kl 84 (261)
T KOG3294|consen 45 GTKKGTLYLTSHRIIFISSKPKDAFK----------SFMMPFNLMKDVKL 84 (261)
T ss_pred cceeeeEEeecceEEEecCCCCcchh----------hhcchhhhhhhcee
Confidence 44568999999999999988633 22 24566666665543
No 32
>PF05553 DUF761: Cotton fibre expressed protein; InterPro: IPR008480 This family consists of several plant proteins of unknown function. Three of the sequences from Gossypium hirsutum (Upland cotton) in this family are described as G. hirsutum fibre expressed proteins []. The remaining sequences, found in Arabidopsis thaliana, are uncharacterised.
Probab=31.03 E-value=24 Score=24.57 Aligned_cols=21 Identities=24% Similarity=0.466 Sum_probs=18.2
Q ss_pred HHHhHhhhhhhhhhhhhcccC
Q 024061 107 AEATKRAEDLAGNMWQHLKTG 127 (273)
Q Consensus 107 ~eatrKae~~a~~iw~Hlk~g 127 (273)
.|..++||.|..+++++||+-
T Consensus 3 ~evd~rAe~FI~~f~~qlrlq 23 (38)
T PF05553_consen 3 DEVDRRAEEFIAKFREQLRLQ 23 (38)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 356679999999999999976
No 33
>KOG1032 consensus Uncharacterized conserved protein, contains GRAM domain [Function unknown]
Probab=30.40 E-value=24 Score=36.62 Aligned_cols=92 Identities=22% Similarity=0.363 Sum_probs=62.6
Q ss_pred CChHHHHhhhhcceeecCCCCeeeeEEeecceeeeecCCCcceecCCceeeeEEEEeeeccccccccCCCCCCCCcCceE
Q 024061 160 TVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDETQWSYYKVVIPLSQLKAVNPSTSKAKPAEKYI 239 (273)
Q Consensus 160 v~~~EkLlKa~aCYLSTsaGPVaG~LfIST~kvAFCSDrpl~~~s~g~~~~~yYKVvIPL~kik~Vnps~n~~nPseKYI 239 (273)
+.+.|+|+..+.|+|.-.-. .=|=+|||...|+|-|.- -|-. -|||||+..|..+.....-. -..-=|
T Consensus 117 ~~~~~~l~~~~~cal~reil-lQGrmyis~~~icF~s~i------~gw~----~~~vIpf~eI~~ikk~~tag-~fpn~i 184 (590)
T KOG1032|consen 117 VPDPEILLTDYSCALQREIL-LQGRMYISEEHICFNSNI------FGWE----TKVVIPFDEITLIKKTKTAG-IFPNAI 184 (590)
T ss_pred CCCcceeeeecchhhccccc-cccccccccceeeecccc------cCcc----ceeEEeeeeeeeeehhhhcc-CCCcce
Confidence 77889999999999987754 458899999888886642 2211 28999998887776543111 111125
Q ss_pred EEEEecCceeeeeeeccHHHHHHHH
Q 024061 240 QVISVDNHEFWFMGFVHYDSAVKNL 264 (273)
Q Consensus 240 qIVTvD~~EFWFMGFvnYdKA~k~L 264 (273)
+|-|+..- +=|-+|+.=|-+++..
T Consensus 185 ~i~t~~~k-y~f~s~~Srda~~~~~ 208 (590)
T KOG1032|consen 185 EITTGTTK-YIFVSLLSRDATYKLI 208 (590)
T ss_pred EEecCCCc-ceeeecccCccHHHHH
Confidence 55544444 4578999988888843
No 34
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=27.97 E-value=52 Score=19.87 Aligned_cols=17 Identities=12% Similarity=-0.009 Sum_probs=14.7
Q ss_pred ccHHHHHHHHHHhhCCC
Q 024061 255 VHYDSAVKNLLGALGPR 271 (273)
Q Consensus 255 vnYdKA~k~Lq~Al~~~ 271 (273)
.++++|++++++|..++
T Consensus 19 ~d~~~A~~~~~~Aa~~g 35 (36)
T smart00671 19 KDLEKALEYYKKAAELG 35 (36)
T ss_pred cCHHHHHHHHHHHHHcc
Confidence 48899999999998765
No 35
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=23.96 E-value=76 Score=25.37 Aligned_cols=32 Identities=22% Similarity=0.377 Sum_probs=23.1
Q ss_pred EEeeeccccccccCCCCCCCCcCce-EEEEEecC
Q 024061 214 KVVIPLSQLKAVNPSTSKAKPAEKY-IQVISVDN 246 (273)
Q Consensus 214 KVvIPL~kik~Vnps~n~~nPseKY-IqIVTvD~ 246 (273)
+=.|||..|++|....+.... .+| +||||-|.
T Consensus 44 ~g~I~L~~i~~ve~v~~~~~~-~~~~fqivt~~r 76 (98)
T cd01244 44 SALIKLAAIKGTEPLSDKSFV-NVDIITIVCEDD 76 (98)
T ss_pred eeeEEccceEEEEEcCCcccC-CCceEEEEeCCC
Confidence 668999999999766543222 245 89999775
No 36
>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=22.78 E-value=1.3e+02 Score=25.84 Aligned_cols=42 Identities=26% Similarity=0.548 Sum_probs=28.7
Q ss_pred eeeEEEEeeeccccccccCCCCC---CCCcCceEEEEEecCceeeeee
Q 024061 209 QWSYYKVVIPLSQLKAVNPSTSK---AKPAEKYIQVISVDNHEFWFMG 253 (273)
Q Consensus 209 ~~~yYKVvIPL~kik~Vnps~n~---~nPseKYIqIVTvD~~EFWFMG 253 (273)
..-||| .|||..|-.|.++.+. .....-..+|+| .+--| |+|
T Consensus 36 ~skyyK-eIPLsEIl~V~~~~~~~~~~~~~~hcFEi~T-~~~vY-~VG 80 (117)
T cd01239 36 GSRYYK-EIPLAEILSVSSNNGDSVLAKHPPHCFEIRT-TTNVY-FVG 80 (117)
T ss_pred CCeeeE-EeehHHheEEeccCCCcCCCCCCCcEEEEEe-cCEEE-Eec
Confidence 345777 5899999999765333 134677899999 55554 444
No 37
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=22.52 E-value=2e+02 Score=21.44 Aligned_cols=39 Identities=21% Similarity=0.348 Sum_probs=23.8
Q ss_pred EEeeeccccc-cccCCCCCCCCcCceEEEEEecCceeeeeeecc
Q 024061 214 KVVIPLSQLK-AVNPSTSKAKPAEKYIQVISVDNHEFWFMGFVH 256 (273)
Q Consensus 214 KVvIPL~kik-~Vnps~n~~nPseKYIqIVTvD~~EFWFMGFvn 256 (273)
||.||.+.-+ .|+++-. .=+|+.|+.+|+..+.+..++.
T Consensus 2 ~IAv~~~~~~~~v~~hFg----~a~~f~i~d~~~~~~~~~~~~~ 41 (103)
T cd00851 2 KIAIPVSGNGGKVSPHFG----RAPYFLIYDVETGKIKNVEVIE 41 (103)
T ss_pred EEEEEecCCCccccCccc----cCCEEEEEEccCCcEeEEEEec
Confidence 5666766666 5555432 2357777777777666655553
No 38
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.49 E-value=3.3e+02 Score=26.93 Aligned_cols=24 Identities=21% Similarity=0.238 Sum_probs=14.0
Q ss_pred HHHHHhhhhhhhHHHhHhhhhhhh
Q 024061 95 VKGALSNWGKKAAEATKRAEDLAG 118 (273)
Q Consensus 95 v~~~~~~~gkk~~eatrKae~~a~ 118 (273)
+.+.-...-||..|..||-+.+++
T Consensus 69 L~~rqeEL~Rke~ELdRREr~~a~ 92 (313)
T KOG3088|consen 69 LLKKQEELRRKEQELDRRERALAR 92 (313)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhh
Confidence 444445555666666666666665
No 39
>PF04283 CheF-arch: Chemotaxis signal transduction system protein F from archaea; InterPro: IPR007381 This is an archaeal protein of unknown function.
Probab=22.11 E-value=1.4e+02 Score=27.25 Aligned_cols=36 Identities=31% Similarity=0.470 Sum_probs=29.4
Q ss_pred CCCeeeeEEeecceeeeecCCCcceecCCceeeeEEEEeeeccccccccC
Q 024061 178 AGPVVGVLYLSTAKLAFCSDDPLSYKVGDETQWSYYKVVIPLSQLKAVNP 227 (273)
Q Consensus 178 aGPVaG~LfIST~kvAFCSDrpl~~~s~g~~~~~yYKVvIPL~kik~Vnp 227 (273)
+.|+-|-+.||+.|+-|-++.- |+.|||.+|..|.-
T Consensus 23 ~~W~~~rIiLs~~rlvl~~~~~--------------k~~Ipls~I~Di~~ 58 (221)
T PF04283_consen 23 GKWVKGRIILSNDRLVLAFNDG--------------KITIPLSSIEDIGV 58 (221)
T ss_pred CCcEEEEEEEecCEEEEEcCCC--------------eEEEecceeEeccc
Confidence 6799999999999999876221 77899999887765
No 40
>PF04326 AAA_4: Divergent AAA domain; InterPro: IPR007421 AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate. This entry is related to IPR003959 from INTERPRO, and presumably has the same function (ATP-binding). A number of the archaeal members of this group are annotated as ATP-dependent DNA helicases 3.6.1 from EC.; GO: 0005524 ATP binding; PDB: 2KYY_A 3LMM_D.
Probab=21.43 E-value=50 Score=25.40 Aligned_cols=32 Identities=22% Similarity=0.532 Sum_probs=22.4
Q ss_pred eeeccCCChHHH---HhhhhcceeecCCCCeeeeEEeec
Q 024061 154 FRQSFDTVPEEQ---LLKTYACYLSTSAGPVVGVLYLST 189 (273)
Q Consensus 154 FkQ~F~v~~~Ek---LlKa~aCYLSTsaGPVaG~LfIST 189 (273)
||+.+......+ |.|+..|++-| .| |+|+|--
T Consensus 7 fK~~~~~~~~~~~~~i~k~i~AfaN~-~G---G~iiiGV 41 (122)
T PF04326_consen 7 FKESLNKSSKKGKKEIAKTICAFANT-EG---GYIIIGV 41 (122)
T ss_dssp EE-GCCTCCCTEE--HHHHHHHHHCS-TT---EEEEETE
T ss_pred EEecCCCCccchHHHHHHHHHHHhCC-CC---CEEEEEE
Confidence 666666555443 99999999988 45 8888753
No 41
>PF08909 DUF1854: Domain of unknown function (DUF1854); InterPro: IPR015005 These protein is functionally uncharacterised. It is found at the C terminus of a number of ATP transporter proteins suggesting it may be involved in ligand binding.
Probab=21.05 E-value=66 Score=27.82 Aligned_cols=37 Identities=22% Similarity=0.326 Sum_probs=25.3
Q ss_pred cCceEEEEEecCce-eeeeeeccHHH-HHHHHHHhhCCC
Q 024061 235 AEKYIQVISVDNHE-FWFMGFVHYDS-AVKNLLGALGPR 271 (273)
Q Consensus 235 seKYIqIVTvD~~E-FWFMGFvnYdK-A~k~Lq~Al~~~ 271 (273)
.+.||-|++.||+| +|.=-.=--+. +.+.|+++|..+
T Consensus 17 P~~~isl~~~~G~El~~I~~l~~L~~~~r~lle~eLa~R 55 (133)
T PF08909_consen 17 PDEGISLVDEDGHELAWIDDLDDLPEESRALLEEELARR 55 (133)
T ss_pred CCccEEEEcCCCcEEEEEcChhHCCHHHHHHHHHHHHhC
Confidence 35799999999999 88755433332 355566666554
No 42
>PF10756 bPH_6: Bacterial PH domain; InterPro: IPR019692 Proteins in this entry are conserved in the Actinomycetales. Although several members are annotated as RbiX homologues, RbiX being a putative regulator of riboflavin biosynthesis, the function could not be confirmed. This entry also includes low molecular weight protein antigen 6.
Probab=20.52 E-value=93 Score=22.87 Aligned_cols=36 Identities=11% Similarity=0.192 Sum_probs=30.3
Q ss_pred EEeeeccccccccCCCCCCCCcCceEEEEEecCceeeeeee
Q 024061 214 KVVIPLSQLKAVNPSTSKAKPAEKYIQVISVDNHEFWFMGF 254 (273)
Q Consensus 214 KVvIPL~kik~Vnps~n~~nPseKYIqIVTvD~~EFWFMGF 254 (273)
...||..+|..|. .....+++.+.+.|+..++|||.
T Consensus 19 t~~vpW~~I~~v~-----~~~~~~~v~~~~~dg~~~~l~~~ 54 (73)
T PF10756_consen 19 TRRVPWSEIAGVR-----FRRGRRWVRLDLRDGRLVPLPAV 54 (73)
T ss_pred eEEEChHHeEEEE-----ccCCceEEEEECCCCCEEEEeeE
Confidence 5678999999888 34566779999999999999985
Done!