BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024062
(273 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M028|LMBD2_ARATH LIMR family protein At5g01460 OS=Arabidopsis thaliana GN=At5g01460
PE=2 SV=1
Length = 509
Score = 521 bits (1343), Expect = e-147, Method: Compositional matrix adjust.
Identities = 251/273 (91%), Positives = 266/273 (97%)
Query: 1 MRTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL 60
MRTTFPEYVVALATIVGSVLF+IFGGVGIACLPLGLI +FIRRPKAVITRSQYIKEATEL
Sbjct: 200 MRTTFPEYVVALATIVGSVLFTIFGGVGIACLPLGLITAFIRRPKAVITRSQYIKEATEL 259
Query: 61 GKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAET 120
GKKAR+LKKAAD LHQEERSG+KGRKWRKNVK+VEKELLQLEEDV LLEEMYPQGE+AET
Sbjct: 260 GKKARDLKKAADALHQEERSGAKGRKWRKNVKAVEKELLQLEEDVNLLEEMYPQGEQAET 319
Query: 121 SWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGT 180
+WA TVLGYLAK VLGILG IVSVAW+AHI+IYLL++PPL PFLNEVFIKLDD+WGLLGT
Sbjct: 320 AWAFTVLGYLAKFVLGILGLIVSVAWIAHIIIYLLVDPPLSPFLNEVFIKLDDVWGLLGT 379
Query: 181 AAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF 240
AAFAFFCFYLLLAVIAGAMMLGL+LVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF
Sbjct: 380 AAFAFFCFYLLLAVIAGAMMLGLKLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF 439
Query: 241 CSTAFGYYAQATAAQEIFGHTLESLRGIKYLYK 273
C+TAFGYYAQATAAQEIFGHTL+SLRGIKYLYK
Sbjct: 440 CATAFGYYAQATAAQEIFGHTLQSLRGIKYLYK 472
>sp|Q9SR93|LMBD1_ARATH LIMR family protein At3g08930 OS=Arabidopsis thaliana GN=At3g08930
PE=2 SV=2
Length = 509
Score = 520 bits (1338), Expect = e-147, Method: Compositional matrix adjust.
Identities = 250/273 (91%), Positives = 266/273 (97%)
Query: 1 MRTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL 60
MRTTFPEYVVALATIVGSVLF+IFGGVGIACLPLGLI +FIRRPKAVITRSQYIKEATEL
Sbjct: 200 MRTTFPEYVVALATIVGSVLFTIFGGVGIACLPLGLITAFIRRPKAVITRSQYIKEATEL 259
Query: 61 GKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAET 120
GKKARELKKAAD LHQEERSG+KGRKWRKNVK+VEKELLQLEEDV LLEEMYPQGE+AET
Sbjct: 260 GKKARELKKAADGLHQEERSGAKGRKWRKNVKAVEKELLQLEEDVNLLEEMYPQGEQAET 319
Query: 121 SWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGT 180
+WA TVLGYLAK +LGI+G IVS+AWVAHI+IYLL++PPL PFLNEVFIKLDD+WGLLGT
Sbjct: 320 AWAFTVLGYLAKFILGIVGLIVSIAWVAHIIIYLLVDPPLSPFLNEVFIKLDDVWGLLGT 379
Query: 181 AAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF 240
AAFAFFCFYLLLAVIAGAMMLGL+LVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF
Sbjct: 380 AAFAFFCFYLLLAVIAGAMMLGLKLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF 439
Query: 241 CSTAFGYYAQATAAQEIFGHTLESLRGIKYLYK 273
C+TAFGYYAQATAAQEIFGHTL+SLRGIKYLYK
Sbjct: 440 CATAFGYYAQATAAQEIFGHTLQSLRGIKYLYK 472
>sp|Q658I5|LMBD1_ORYSJ LIMR family protein Os06g0128200 OS=Oryza sativa subsp. japonica
GN=Os06g0128200 PE=2 SV=1
Length = 510
Score = 461 bits (1185), Expect = e-129, Method: Compositional matrix adjust.
Identities = 232/273 (84%), Positives = 256/273 (93%)
Query: 1 MRTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL 60
MR TFPEYVVALATIVGSVLF+IFGGVGIACLPLGLIFSF+RRPKAVITRSQYIKEATEL
Sbjct: 201 MRATFPEYVVALATIVGSVLFTIFGGVGIACLPLGLIFSFVRRPKAVITRSQYIKEATEL 260
Query: 61 GKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAET 120
GKKARELKKAA+ LHQEE+SG KGRKWRKNVK++ KEL+ LE+D+K LEEMYPQGE+AE
Sbjct: 261 GKKARELKKAAEALHQEEKSGKKGRKWRKNVKALGKELVLLEDDMKALEEMYPQGEQAEA 320
Query: 121 SWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGT 180
+WALTVLGY+ KL+ G +G I+S+AWVAHIVIYLLI+PPL FLNE+F+KLD +WGLLGT
Sbjct: 321 TWALTVLGYIGKLLFGAVGLIISIAWVAHIVIYLLIDPPLSSFLNEIFVKLDGVWGLLGT 380
Query: 181 AAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF 240
AAFAFFCFYLL+AVIAG MMLGL+LVFITIHPMKWG TLMNSFLFNVGLILLCSISVIQF
Sbjct: 381 AAFAFFCFYLLIAVIAGEMMLGLKLVFITIHPMKWGGTLMNSFLFNVGLILLCSISVIQF 440
Query: 241 CSTAFGYYAQATAAQEIFGHTLESLRGIKYLYK 273
C+TAF YYAQATAAQEIFGHTL+SLRGIKYLYK
Sbjct: 441 CATAFAYYAQATAAQEIFGHTLQSLRGIKYLYK 473
>sp|D8TFA8|LMBD3_SELML LIMR family protein SELMODRAFT_432208 OS=Selaginella moellendorffii
GN=SELMODRAFT_432208 PE=3 SV=2
Length = 410
Score = 264 bits (674), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 125/212 (58%), Positives = 166/212 (78%), Gaps = 5/212 (2%)
Query: 8 YVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATELGKKAREL 67
YV+ L TI+GS+LF +FGGVG+A LPL LIF+F RPK VITR+QY+KEAT+L K++ EL
Sbjct: 168 YVITLNTIIGSILFMMFGGVGMATLPLSLIFAFKNRPKCVITRAQYVKEATDLAKRSNEL 227
Query: 68 KKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAETSWALTVL 127
K A L +EER G KGR +RKNVK V++EL+ LE+DV+ L E +PQGEK LTVL
Sbjct: 228 KTATLGLQREERGGKKGRMFRKNVKKVQQELVFLEDDVEALNEAFPQGEK-----TLTVL 282
Query: 128 GYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGTAAFAFFC 187
YLAKLV GI+G +S+ W+ HI++++L+NPP PFLN+VFI+LD + GLLGT FA FC
Sbjct: 283 FYLAKLVFGIVGLALSIIWLLHIIVFMLVNPPAFPFLNQVFIQLDTVGGLLGTTTFAIFC 342
Query: 188 FYLLLAVIAGAMMLGLRLVFITIHPMKWGATL 219
+YL+++VI+G M LG+RL+F++IHPMK+ TL
Sbjct: 343 YYLVMSVISGKMHLGMRLLFLSIHPMKYQGTL 374
>sp|D8S067|LMBD2_SELML LIMR family protein SELMODRAFT_416716 OS=Selaginella moellendorffii
GN=SELMODRAFT_416716 PE=3 SV=1
Length = 264
Score = 217 bits (552), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 107/218 (49%), Positives = 145/218 (66%), Gaps = 37/218 (16%)
Query: 2 RTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIK-----E 56
R FP Y++AL+TI+ S+LF++FGGVG+A LPL LIF+F RPK V TR+QY+K E
Sbjct: 79 RAPFPTYMIALSTIIRSILFTMFGGVGMATLPLSLIFAFKNRPKCVTTRAQYVKVMALQE 138
Query: 57 ATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGE 116
AT+L K++ ELK A L +EER G KGRK+RKNVK V++
Sbjct: 139 ATDLAKRSNELKTATLGLQREERGGKKGRKFRKNVKKVQQ-------------------- 178
Query: 117 KAETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWG 176
A+TSWALTV +S+ W+ HI++++L+NPP PFLN+VFI+LD WG
Sbjct: 179 -ADTSWALTVRN-----------LALSIIWLLHIIVFMLVNPPAFPFLNQVFIQLDSAWG 226
Query: 177 LLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMK 214
LLGT FA FC+YL+++VI+G M LG+RL+ ++IHPMK
Sbjct: 227 LLGTTTFAIFCYYLVMSVISGEMHLGMRLLLLSIHPMK 264
>sp|D8RQM9|CSPLJ_SELML CASP-like protein SELMODRAFT_413556 OS=Selaginella moellendorffii
GN=SELMODRAFT_413556 PE=3 SV=1
Length = 185
Score = 214 bits (546), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 113/211 (53%), Positives = 145/211 (68%), Gaps = 33/211 (15%)
Query: 29 IACLPLGLIFSFIRRPKAVITRSQYIK-----EATELGKKARELKKAADTLHQEERSGSK 83
+A LPL LIF+F RPK VITR+QY+K E T K++ EL GS
Sbjct: 1 MATLPLSLIFAFKNRPKCVITRAQYVKVMAWQEVT--AKRSNEL-------------GSP 45
Query: 84 GRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAETSWALTVLGYLAKLVLGILGFIVS 143
R+ KS +EL+ LE+DV+ L E +PQGEKA+TSWA+TVL YLAKLV GILG +S
Sbjct: 46 TRR-----KSSIQELVFLEDDVQALNEAFPQGEKADTSWAVTVLFYLAKLVFGILGLALS 100
Query: 144 VAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGTAAFAFFCFYLLLAVIAGAMMLGL 203
+ W+ HI++++L+NPP PFLN+VFI+LD WGLLGT AFA FC+YL+++VI+G M
Sbjct: 101 IIWLLHIIVFMLVNPPAFPFLNQVFIQLDSAWGLLGTTAFAIFCYYLIMSVISGEMH--- 157
Query: 204 RLVFITIHPMKWGATLMNSFLFNVGLILLCS 234
+IHPMK+ TLMNSFLFNV +ILLCS
Sbjct: 158 -----SIHPMKYQGTLMNSFLFNVAIILLCS 183
>sp|D8TFB0|LMBD1_SELML LIMR family protein SELMODRAFT_432210 OS=Selaginella moellendorffii
GN=SELMODRAFT_432210 PE=3 SV=1
Length = 321
Score = 205 bits (521), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 107/210 (50%), Positives = 141/210 (67%), Gaps = 30/210 (14%)
Query: 5 FPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATELGKKA 64
FP YV+AL S+LF++FGGV IA LPL LIF+F RPK V+ ++EAT+L K +
Sbjct: 142 FPTYVIAL-----SILFTMFGGVRIATLPLSLIFAFKNRPKCVMA----LQEATDLAKSS 192
Query: 65 RELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAETSWAL 124
LKK L +EER G KGRK RKNVK V++E +TSWAL
Sbjct: 193 NVLKKVTLGLQREERGGKKGRKLRKNVKKVQQE---------------------DTSWAL 231
Query: 125 TVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGTAAFA 184
TVL YLAKLV GILG +S+ W+ HI++++L+NPP PFLN+VFI+LD LLGT FA
Sbjct: 232 TVLFYLAKLVFGILGLALSIIWLLHILVFMLVNPPAFPFLNQVFIQLDSAGDLLGTTPFA 291
Query: 185 FFCFYLLLAVIAGAMMLGLRLVFITIHPMK 214
FC+Y +++VI+G M LG++L+F++IHPMK
Sbjct: 292 IFCYYFVMSVISGEMHLGMKLLFLSIHPMK 321
>sp|D8S069|CSPLI_SELML CASP-like protein SELMODRAFT_416718 OS=Selaginella moellendorffii
GN=SELMODRAFT_416718 PE=3 SV=1
Length = 187
Score = 203 bits (517), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 103/197 (52%), Positives = 136/197 (69%), Gaps = 16/197 (8%)
Query: 23 IFGGVGIACLPLGLIFSFIRRPKAVITRSQYIK-----EATELGKKARELKKAADTLHQE 77
+FGGVG+A LPL LIF+F RPK VITR+QY+K E T+L K++ EL E
Sbjct: 2 MFGGVGMATLPLSLIFAFKNRPKCVITRAQYVKVMAWQEVTDLAKRSNELGSPTRRKRLE 61
Query: 78 ERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAETSWALTVLGYLAKLVLGI 137
ER+ + ++EL+ LE+DV+ L E +PQGEKA+TSWALTVL YLAKLV GI
Sbjct: 62 ERTKVSEKC---EESPADQELVFLEDDVQALNEAFPQGEKADTSWALTVLFYLAKLVFGI 118
Query: 138 LGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGTAAFAFFCFYLLLAVIAG 197
LG +SV W+ HI++++L+NPP PFLN+VFI+LD WGLLGT AFA FC+YL+++VI+G
Sbjct: 119 LGLALSVIWLLHIIVFMLVNPPAFPFLNQVFIQLDSAWGLLGTTAFAIFCYYLVMSVISG 178
Query: 198 AMMLGLRLVFITIHPMK 214
M +I+PMK
Sbjct: 179 EMH--------SIYPMK 187
>sp|D8S072|CSPLK_SELML CASP-like protein SELMODRAFT_416721 OS=Selaginella moellendorffii
GN=SELMODRAFT_416721 PE=3 SV=1
Length = 166
Score = 192 bits (489), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 96/187 (51%), Positives = 130/187 (69%), Gaps = 22/187 (11%)
Query: 29 IACLPLGLIFSFIRRPKAVITRSQYIKEATELGKKARELKKAADTLHQEERSGSKGRKWR 88
+A LP+ L+F+F RPK VITR+QY+KEAT+L K++ EL GS R+
Sbjct: 1 MATLPVSLVFAFKNRPKCVITRAQYVKEATDLAKRSNEL-------------GSPTRRKD 47
Query: 89 KNVKSVE-KELLQLEEDVKLLEEMYPQGEKAETSWALTVLGYLAKLVLGILGFIVSVAWV 147
++ + +EL+ LE+DV+ L E +PQGEKA+TSWA+TVL LAKLV GILG +SV W
Sbjct: 48 ESFGKISIQELVFLEDDVQALNEAFPQGEKADTSWAVTVLFSLAKLVFGILGLALSVIWP 107
Query: 148 AHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVF 207
HI++++L+NPP PFLN+VFI+LD WGLLGT AFA FC+YL+++VI+G M
Sbjct: 108 LHIIVFMLVNPPAFPFLNQVFIQLDSAWGLLGTTAFAIFCYYLVMSVISGEMH------- 160
Query: 208 ITIHPMK 214
+IHPMK
Sbjct: 161 -SIHPMK 166
>sp|Q54QP7|Y3707_DICDI LIMR family protein DDB_G0283707 OS=Dictyostelium discoideum
GN=DDB_G0283707 PE=3 SV=2
Length = 507
Score = 184 bits (467), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 98/274 (35%), Positives = 153/274 (55%), Gaps = 12/274 (4%)
Query: 2 RTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATELG 61
R + +++ + G +LF IFGG+G+ LP +I F RP+ I +Y++ ++G
Sbjct: 212 RVSIALFIITMVAFFGWLLFIIFGGIGLVALPFDMIGDFKNRPQR-IPYDKYLERKKKIG 270
Query: 62 KKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYP-QGEKAET 120
++A EL + T+ G ++ RKN + + LEED + L+ Y QG K
Sbjct: 271 ERATELVEIGKTIQSRTSGGIMSKRDRKNYNRFRQAIFLLEEDYERLKISYKRQGGK--- 327
Query: 121 SWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINP-PLHPFLNEVFIKLDDLWGLLG 179
V+ Y A+ G + VS+ W+ HI+IY++ P P HPFLN + I L++ WG LG
Sbjct: 328 -----VIFYYAQFFGGFVALGVSLGWLLHIIIYMITAPEPFHPFLNSLVIALNNAWGFLG 382
Query: 180 TAAFAFFCFYLLLAVIAGAMMLGLRLVFI-TIHPMKWGATLMNSFLFNVGLILLCSISVI 238
+ FYLL V+ G GLRL F+ IHPM+ G T+MN+FLFNVGLIL+ S+S+
Sbjct: 383 VIVYGLLSFYLLFCVVKGNFKFGLRLFFLFPIHPMRVGNTMMNAFLFNVGLILITSVSIT 442
Query: 239 QFCSTAFGYYAQATAAQEIFGHTLESLRGIKYLY 272
FC+ AF + TA +F +++L+ +K+ +
Sbjct: 443 HFCTMAFSQFTSTTAINSLFETAVKNLKILKWFW 476
>sp|Q54BI3|Y3610_DICDI LIMR family protein DDB_G0293610 OS=Dictyostelium discoideum
GN=DDB_G0293610 PE=3 SV=1
Length = 507
Score = 183 bits (464), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 96/274 (35%), Positives = 152/274 (55%), Gaps = 12/274 (4%)
Query: 2 RTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATELG 61
R + +++ + G +LF IFGG+G+ LP +I F RP+ I +Y++ ++G
Sbjct: 212 RVSIALFIITMVAFFGWLLFIIFGGIGLVALPFDMITDFKNRPQR-IPYDKYLERKKKIG 270
Query: 62 KKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYP-QGEKAET 120
++A EL T+ G ++ R+N + + LEED + L+ Y QG K
Sbjct: 271 ERATELVDVGKTIQSRTTGGIMSKRDRRNYNRFRQAIFLLEEDYERLKISYKRQGGK--- 327
Query: 121 SWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINP-PLHPFLNEVFIKLDDLWGLLG 179
V+ Y A+ G + VS+ W+ HI+IY++ P P HPFLN + I L++ WG LG
Sbjct: 328 -----VILYYAQFFGGFIALGVSLGWLLHIIIYMITAPEPFHPFLNSLVISLNNAWGFLG 382
Query: 180 TAAFAFFCFYLLLAVIAGAMMLGLRLVFI-TIHPMKWGATLMNSFLFNVGLILLCSISVI 238
+ FYLL V+ G GLRL F+ IHPM+ G T+MN+FLFNVGLIL+ S+S+
Sbjct: 383 VIVYGLLSFYLLFCVVKGNFKFGLRLFFLFPIHPMRVGNTMMNAFLFNVGLILITSVSIT 442
Query: 239 QFCSTAFGYYAQATAAQEIFGHTLESLRGIKYLY 272
FC+ AF + T+ +F +++L+ +K+ +
Sbjct: 443 HFCTMAFSQFTSTTSINSLFETAVKNLKILKWFW 476
>sp|P85001|CE290_DANRE Centrosomal protein of 290 kDa OS=Danio rerio GN=cep290 PE=2 SV=1
Length = 2439
Score = 34.7 bits (78), Expect = 0.86, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 41 IRRPKAVITRSQYIKEATELGKKARELKKAADTLH-QEERSGSKGRKWRKNVKSVEKELL 99
IR+ ++ + R + KE T+L K+ + +K+ + L + E + K RK ++ +K + ++
Sbjct: 114 IRQLESHLERKE--KEVTQLEKEMGKERKSNEELALRAEEAEEKNRKLKREIKQLTRKNE 171
Query: 100 QLEEDVKLLEEMYPQGEKAET 120
QL++D++ + Q E +T
Sbjct: 172 QLQQDIEFYRKEAEQRESLQT 192
>sp|Q0UUE1|LMBD1_PHANO Probable lysosomal cobalamin transporter OS=Phaeosphaeria nodorum
(strain SN15 / ATCC MYA-4574 / FGSC 10173) GN=SNOG_04623
PE=3 SV=1
Length = 590
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 12/93 (12%)
Query: 8 YVVALATIVGSVLFSIFGGVGIACLPLGLIFS--FIRRPK-AVITRSQYIKEATELGKKA 64
+ + L VG+VLF ++ G G+A LP+ +I S ++ P A T SQ EA ++
Sbjct: 194 FALGLLMTVGTVLFVLYTGAGMAMLPVAMIKSAPYVSNPTLAANTASQL--EANR--ERQ 249
Query: 65 RELKKAADTLHQEERSGSKGRKWRKNVKSVEKE 97
R+L+ E R G + R+ ++S+ +E
Sbjct: 250 RQLEG-----RNEGRDGGLDARDRRELESLIRE 277
>sp|Q4WCL2|LMBD1_ASPFU Probable lysosomal cobalamin transporter OS=Neosartorya fumigata
(strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100)
GN=AFUA_8G04030 PE=3 SV=1
Length = 572
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 75/166 (45%), Gaps = 29/166 (17%)
Query: 8 YVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATELGKKAREL 67
+++ TI+GS L++ + G+A LP F+R+ + T+ T G A EL
Sbjct: 191 FLLGFVTIIGSCLYAFYTPSGLAMLPA----LFLRKSSSFATQ-------TLGGSTAMEL 239
Query: 68 KKAADTLHQ-EERSGSK----GRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAETSW 122
+ Q E R G K R+ + ++ +E L +L+E ++ + SW
Sbjct: 240 NFNRERQRQLEGRCGGNSALLSAKDRRELDTLVREERTLIRRQRLIEGR----QEEDQSW 295
Query: 123 ALTVLGYLA------KLVLGILGFIVSVA-WVAHI--VIYLLINPP 159
+TV L +L+ G F+V ++ W++ + V+ LIN P
Sbjct: 296 PVTVYSKLKTILRPFRLLGGFCLFLVGLSTWISLLMTVVDKLINSP 341
>sp|B0YA61|LMBD1_ASPFC Probable lysosomal cobalamin transporter OS=Neosartorya fumigata
(strain CEA10 / CBS 144.89 / FGSC A1163) GN=AFUB_083530
PE=3 SV=1
Length = 572
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 75/166 (45%), Gaps = 29/166 (17%)
Query: 8 YVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATELGKKAREL 67
+++ TI+GS L++ + G+A LP F+R+ + T+ T G A EL
Sbjct: 191 FLLGFVTIIGSCLYAFYTPSGLAMLPA----LFLRKSSSFATQ-------TLGGSTAMEL 239
Query: 68 KKAADTLHQ-EERSGSK----GRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAETSW 122
+ Q E R G K R+ + ++ +E L +L+E ++ + SW
Sbjct: 240 NFNRERQRQLEGRCGGNSALLSAKDRRELDTLVREERTLIRRQRLIEGR----QEEDQSW 295
Query: 123 ALTVLGYLA------KLVLGILGFIVSVA-WVAHI--VIYLLINPP 159
+TV L +L+ G F+V ++ W++ + V+ LIN P
Sbjct: 296 PVTVYSKLKTILRPFRLLGGFCLFLVGLSTWISLLMTVVDKLINSP 341
>sp|O13024|INCEA_XENLA Inner centromere protein A OS=Xenopus laevis GN=incenp-a PE=1 SV=1
Length = 873
Score = 33.5 bits (75), Expect = 1.8, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 65 RELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAETSWA 123
REL++AA Q+ R + RK R+ + +E+E L+ E++ K L+E + K + + A
Sbjct: 681 RELERAAQEKEQQRREAEE-RKKREQQERLEQERLRKEQEAKRLQEEEQRKAKEQAAVA 738
>sp|Q9XIP7|GTG1_ARATH GPCR-type G protein 1 OS=Arabidopsis thaliana GN=GTG1 PE=1 SV=1
Length = 468
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 56/114 (49%), Gaps = 13/114 (11%)
Query: 4 TFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKA--VITRSQYIKEATE-- 59
T P+ V + ++G L ++ G G LP I FIR + +I+ + + ++TE
Sbjct: 145 TMPQLVSRIG-VIGVTLMAVLSGFGAVNLPYSYISLFIREIEEADIISLERQLIQSTETC 203
Query: 60 LGKKAR------ELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKL 107
+ KK + E+++ + ++RS R V+SV+ + Q E+D+K+
Sbjct: 204 IAKKKKIILCQLEVERNQGSEENQKRSSFFRRIVGTVVRSVQDD--QKEQDIKI 255
>sp|Q8VDD5|MYH9_MOUSE Myosin-9 OS=Mus musculus GN=Myh9 PE=1 SV=4
Length = 1960
Score = 33.1 bits (74), Expect = 2.2, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 50 RSQYIKEATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLE 109
+S+Y L K +L++ D +E ++ SK + R+ K ++ LLQ+E++ + E
Sbjct: 1802 KSKYKASIAALEAKIAQLEEQLDNETKERQAASK--QVRRTEKKLKDVLLQVEDERRNAE 1859
Query: 110 EMYPQGEKAET 120
+ Q +KA T
Sbjct: 1860 QFKDQADKAST 1870
>sp|B0K213|ADDA_THEPX ATP-dependent helicase/nuclease subunit A OS=Thermoanaerobacter sp.
(strain X514) GN=addA PE=3 SV=1
Length = 1233
Score = 33.1 bits (74), Expect = 2.4, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 8/60 (13%)
Query: 95 EKELLQLEEDVKLLEEMYPQGEKAETSWALTVLGY--------LAKLVLGILGFIVSVAW 146
E LLQLE +L EEMY + +K + + V Y L ++L + GF+ S+ W
Sbjct: 131 ETLLLQLEASEELFEEMYAKEDKDKEGFLTLVESYGGTKDDQDLQDILLRLYGFVRSLPW 190
>sp|B0KDB7|ADDA_THEP3 ATP-dependent helicase/nuclease subunit A OS=Thermoanaerobacter
pseudethanolicus (strain ATCC 33223 / 39E) GN=addA PE=3
SV=1
Length = 1233
Score = 33.1 bits (74), Expect = 2.4, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 8/60 (13%)
Query: 95 EKELLQLEEDVKLLEEMYPQGEKAETSWALTVLGY--------LAKLVLGILGFIVSVAW 146
E LLQLE +L EEMY + +K + + V Y L ++L + GF+ S+ W
Sbjct: 131 ETLLLQLEASEELFEEMYAKEDKDKEGFLTLVESYGGTKDDQDLQDILLRLYGFVRSLPW 190
>sp|Q97WH0|RAD50_SULSO DNA double-strand break repair Rad50 ATPase OS=Sulfolobus
solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 /
P2) GN=rad50 PE=3 SV=1
Length = 864
Score = 32.7 bits (73), Expect = 2.6, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 9/80 (11%)
Query: 50 RSQYIKEATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLE--EDVKL 107
R+QY+K T L K EL ++ RS + RK +N+ +EKE+ +LE ++KL
Sbjct: 234 RNQYLKLTTTLKIKEGEL-------NELNRSIEELRKQTENMDQLEKEINELENLRNIKL 286
Query: 108 LEEMYPQGEKAETSWALTVL 127
E Y K+ T + V+
Sbjct: 287 KFEKYEVLAKSHTEMSANVI 306
>sp|Q62812|MYH9_RAT Myosin-9 OS=Rattus norvegicus GN=Myh9 PE=1 SV=3
Length = 1961
Score = 32.3 bits (72), Expect = 3.4, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 50 RSQYIKEATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLE 109
+S+Y L K +L++ D +E ++ SK + R+ K ++ LLQ+E++ + E
Sbjct: 1803 KSKYKASIAALEAKIAQLEEQLDNETKERQAASK--QVRRAEKKLKDVLLQVEDERRNAE 1860
Query: 110 EMYPQGEKAET 120
+ Q +KA T
Sbjct: 1861 QFKDQADKAST 1871
>sp|Q63862|MYH11_RAT Myosin-11 (Fragments) OS=Rattus norvegicus GN=Myh11 PE=2 SV=3
Length = 1327
Score = 32.3 bits (72), Expect = 3.4, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 46 AVITRSQYIKEATELGKKARELKKAADTLH-QEERSGSKGRKWRKNVKSVEKELLQLEED 104
AV R + IK+ +L + ++ ++ D + + ++ K KS+E EL+QL+ED
Sbjct: 991 AVKGREEAIKQLRKLQAQMKDFQRELDDARASRDEIFATSKENEKKAKSLEAELMQLQED 1050
Query: 105 VKLLEEMYPQGE 116
+ E Q +
Sbjct: 1051 LAAAERARKQAD 1062
>sp|P25386|USO1_YEAST Intracellular protein transport protein USO1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=USO1 PE=1 SV=2
Length = 1790
Score = 32.3 bits (72), Expect = 3.5, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 41 IRRPKAVITRSQYIKEATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQ 100
++ +A I +Q KE L + +EL++ D+ Q+ + + R R V+ + E Q
Sbjct: 1619 LKDKQAEIKSNQEEKEL--LTSRLKELEQELDSTQQKAQKSEEER--RAEVRKFQVEKSQ 1674
Query: 101 LEEDVKLLEEMYPQGEKAETSW 122
L+E LLE Y E +W
Sbjct: 1675 LDEKAMLLETKYNDLVNKEQAW 1696
>sp|Q7SDN3|LMBD1_NEUCR Probable lysosomal cobalamin transporter OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=NCU02100 PE=3 SV=2
Length = 603
Score = 32.3 bits (72), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 56/264 (21%), Positives = 111/264 (42%), Gaps = 29/264 (10%)
Query: 16 VGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATELGKKARELKKAADTLH 75
+G +L+ ++ G+A LP+ S I+ A+ A EL + REL++ + +
Sbjct: 205 LGVLLYVLYTATGLALLPV----SLIKSAPAISAPELSAMTAAEL-EHNRELQRQIE-MR 258
Query: 76 QEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAETS-WALTVLGYLA-KL 133
R + +K R+ + + +E L +L E +G+ W T + KL
Sbjct: 259 NAGRIVAMSQKDRRELDLLLREERTLVRRQRLAAEASGEGQSTIMRIWTKTQAVFRPLKL 318
Query: 134 VLGILGFIVSVA-WVAHIVI---------------YLLINPPLHPFLNEVFIKLDDLWGL 177
GIL +SV W++ ++ Y+L + + +N VF+K +
Sbjct: 319 FGGILLLCLSVILWISMLITAIDKAANSVCKSHCGYILGHINVFQPVNWVFVKAAKAFP- 377
Query: 178 LGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGAT----LMNSFLFNVGLILLC 233
+ AF +L + I G +G+R +++ + +K G T L+ + + +IL
Sbjct: 378 IDYILMAFLILFLFSSSITGIASVGIRFLWVRVFQLKKGRTAPQALLIATVMQALIILAI 437
Query: 234 SISVIQFCSTAFGYYAQATAAQEI 257
+ +V+ + + Y T Q +
Sbjct: 438 NYAVVNLLAPQYAMYGTQTFCQAL 461
>sp|A1DB12|LMBD1_NEOFI Probable lysosomal cobalamin transporter OS=Neosartorya fischeri
(strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181)
GN=NFIA_096740 PE=3 SV=1
Length = 563
Score = 32.0 bits (71), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 59/253 (23%), Positives = 109/253 (43%), Gaps = 40/253 (15%)
Query: 8 YVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATELGKKAREL 67
+++ T +GS L+ + G+A LP F+R RS T +G A +L
Sbjct: 191 FLLGFVTTIGSCLYVFYTPSGLALLPA----LFLR-------RSYSFANQTLVGSTAMQL 239
Query: 68 KKAADTLHQ-EERSGSK----GRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAETSW 122
+ Q E R G K R+ + ++ +E L +L+E ++ + SW
Sbjct: 240 DFNRERQRQLEGRCGGNSALLSPKDRRELDTLVREERTLIRRQRLIEGR----QEEDQSW 295
Query: 123 ALTVLGYLA------KLVLGILGFIVSVA-WVAHI--VIYLLINPPLHPFLNEVFIK--L 171
+TV L +L+ G F+V ++ W++ + VI LIN P V +
Sbjct: 296 PVTVYSKLKTILRPFRLLGGFSLFLVGLSTWISLLMTVIDKLINSPCKHHCGYVLSRTNF 355
Query: 172 DDLWGLLGTAAFAFFCFYLLLAVIA---------GAMMLGLRLVFITIHPMKWGATLMNS 222
+ + LL ++ AF Y++ A+I G + +G+R ++I I ++ G T +
Sbjct: 356 NPISWLLIQSSRAFPTDYIIFALIVFLFFWGSVVGVVAVGIRFLWIRIFQIRKGHTSPQA 415
Query: 223 FLFNVGLILLCSI 235
L ++ L ++
Sbjct: 416 MLLATAMLTLITL 428
>sp|B2AA26|LMBD1_PODAN Probable lysosomal cobalamin transporter OS=Podospora anserina
(strain S / ATCC MYA-4624 / DSM 980 / FGSC 10383)
GN=Pa_1_2600 PE=3 SV=1
Length = 596
Score = 31.2 bits (69), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 5/74 (6%)
Query: 10 VALATIVGSVLFSIFGGVGIACLPLGLIFS--FIRRPKAVITRSQYIKEATELGKKAREL 67
V L +G+ L++++ G G+A LP+ LI S I P+ T + ++ EL ++ E+
Sbjct: 199 VGLLITLGTFLYTLYTGAGLALLPVSLIKSAPSISAPQLSATIATDLEHNRELQRQI-EM 257
Query: 68 KKAA--DTLHQEER 79
+ A D + Q++R
Sbjct: 258 RNAGRPDGISQKDR 271
>sp|P35579|MYH9_HUMAN Myosin-9 OS=Homo sapiens GN=MYH9 PE=1 SV=4
Length = 1960
Score = 31.2 bits (69), Expect = 8.3, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 50 RSQYIKEATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLE 109
+S+Y T L K +L++ D +E ++ K + R+ K ++ LLQ++++ + E
Sbjct: 1802 KSKYKASITALEAKIAQLEEQLDNETKERQAACK--QVRRTEKKLKDVLLQVDDERRNAE 1859
Query: 110 EMYPQGEKAET 120
+ Q +KA T
Sbjct: 1860 QYKDQADKAST 1870
>sp|Q9UZC8|RAD50_PYRAB DNA double-strand break repair Rad50 ATPase OS=Pyrococcus abyssi
(strain GE5 / Orsay) GN=rad50 PE=3 SV=1
Length = 880
Score = 31.2 bits (69), Expect = 8.6, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 45 KAVITRSQYIKEATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKS----VEKELLQ 100
+ ++ + I+E + E+ K L ++E+ K + +R +S +EKEL +
Sbjct: 263 EKIVQIERSIEEKKAKISELEEIVKDIPKLQEKEKEYRKLKGFRDEYESKLRRLEKELSK 322
Query: 101 LEEDVKLLEEMYPQGEKAE 119
E ++K +EE+ +GEK +
Sbjct: 323 WESELKAIEEVIKEGEKKK 341
>sp|O94641|HS104_SCHPO Heat shock protein 104 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=hsp104 PE=3 SV=1
Length = 905
Score = 31.2 bits (69), Expect = 8.9, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 48 ITRSQYIKEATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKL 107
+TR + L +K R+L+ L +E+ SK R +K+ KE Q+EE+ +
Sbjct: 407 VTRESQPEVLDNLERKLRQLRVEIRALEREKDEASKER-----LKAARKEAEQVEEETRP 461
Query: 108 LEEMY 112
+ E Y
Sbjct: 462 IREKY 466
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.142 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,333,284
Number of Sequences: 539616
Number of extensions: 3850791
Number of successful extensions: 18393
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 74
Number of HSP's that attempted gapping in prelim test: 18309
Number of HSP's gapped (non-prelim): 138
length of query: 273
length of database: 191,569,459
effective HSP length: 116
effective length of query: 157
effective length of database: 128,974,003
effective search space: 20248918471
effective search space used: 20248918471
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 60 (27.7 bits)