Query 024062
Match_columns 273
No_of_seqs 108 out of 131
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 08:39:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024062.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024062hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04791 LMBR1: LMBR1-like mem 100.0 6.1E-29 1.3E-33 242.4 20.7 259 3-272 155-454 (471)
2 KOG2296 Integral membrane prot 98.0 0.00097 2.1E-08 67.7 20.1 226 7-238 169-465 (673)
3 KOG3722 Lipocalin-interacting 97.6 0.00062 1.3E-08 66.4 10.9 217 8-237 198-450 (538)
4 PF04156 IncA: IncA protein; 95.1 0.3 6.5E-06 42.3 10.8 20 27-46 48-67 (191)
5 COG1422 Predicted membrane pro 93.9 4.6 0.0001 36.2 15.7 27 85-111 94-120 (201)
6 PF04420 CHD5: CHD5-like prote 92.8 0.33 7.2E-06 41.7 6.3 74 90-169 67-141 (161)
7 PF00664 ABC_membrane: ABC tra 88.5 14 0.0003 31.2 14.2 18 8-25 122-139 (275)
8 PF05529 Bap31: B-cell recepto 88.2 5.8 0.00013 34.6 10.1 19 6-24 103-121 (192)
9 KOG3088 Secretory carrier memb 87.4 27 0.00059 33.2 15.7 20 92-111 74-93 (313)
10 PF12537 DUF3735: Protein of u 86.3 5 0.00011 29.9 7.4 58 9-70 9-67 (72)
11 PF00957 Synaptobrevin: Synapt 85.6 14 0.0003 28.1 11.3 25 52-76 11-35 (89)
12 PF01277 Oleosin: Oleosin; In 83.6 9.3 0.0002 31.6 8.4 59 15-74 55-114 (118)
13 PF07889 DUF1664: Protein of u 83.3 4.3 9.3E-05 33.9 6.4 58 53-110 66-124 (126)
14 KOG1962 B-cell receptor-associ 82.5 10 0.00022 34.5 8.9 102 7-111 100-208 (216)
15 PRK10884 SH3 domain-containing 82.2 13 0.00027 33.5 9.4 20 90-109 140-159 (206)
16 PF03904 DUF334: Domain of unk 81.7 13 0.00028 34.1 9.3 24 162-185 185-208 (230)
17 PRK10884 SH3 domain-containing 81.2 12 0.00026 33.7 8.9 26 85-110 142-167 (206)
18 PF01956 DUF106: Integral memb 80.8 34 0.00074 29.0 12.0 36 65-108 50-85 (168)
19 KOG0860 Synaptobrevin/VAMP-lik 79.8 33 0.00072 28.3 10.5 21 91-111 59-79 (116)
20 PF10112 Halogen_Hydrol: 5-bro 79.5 29 0.00062 30.3 10.7 25 48-76 65-89 (199)
21 PF14235 DUF4337: Domain of un 78.4 43 0.00093 28.8 11.2 28 85-112 76-103 (157)
22 PF04120 Iron_permease: Low af 76.9 44 0.00094 28.1 10.9 91 4-108 14-117 (132)
23 KOG2417 Predicted G-protein co 76.9 16 0.00035 35.8 8.8 94 10-107 149-267 (462)
24 PF11026 DUF2721: Protein of u 76.8 41 0.00089 27.7 11.7 48 59-111 18-65 (130)
25 TIGR02976 phageshock_pspB phag 76.7 13 0.00028 28.3 6.5 45 31-76 17-63 (75)
26 PF07586 HXXSHH: Protein of un 76.6 6.6 0.00014 36.7 6.1 41 66-111 166-206 (302)
27 PRK13743 conjugal transfer pro 75.7 25 0.00054 29.7 8.5 64 129-195 39-106 (141)
28 PF07439 DUF1515: Protein of u 74.1 22 0.00048 29.1 7.6 56 54-111 7-62 (112)
29 PF10226 DUF2216: Uncharacteri 70.8 26 0.00057 31.3 8.0 25 87-111 106-130 (195)
30 PF11166 DUF2951: Protein of u 70.7 53 0.0011 26.2 10.4 42 56-97 12-54 (98)
31 PF10779 XhlA: Haemolysin XhlA 68.5 45 0.00097 24.6 10.4 34 98-145 36-69 (71)
32 PRK09609 hypothetical protein; 67.8 1.2E+02 0.0026 29.2 12.7 21 91-111 140-160 (312)
33 PRK13182 racA polar chromosome 67.7 28 0.00061 30.5 7.6 60 56-115 86-151 (175)
34 PF06936 Selenoprotein_S: Sele 67.3 5.4 0.00012 35.5 3.1 36 3-40 22-58 (190)
35 PF06667 PspB: Phage shock pro 66.2 16 0.00035 27.8 5.0 44 32-76 18-63 (75)
36 PF14235 DUF4337: Domain of un 65.9 39 0.00085 29.0 8.0 33 84-116 82-114 (157)
37 PF09712 PHA_synth_III_E: Poly 65.5 19 0.00041 34.0 6.5 27 83-109 266-292 (293)
38 TIGR01834 PHA_synth_III_E poly 64.5 27 0.00058 33.6 7.3 30 83-112 283-312 (320)
39 KOG3312 Predicted membrane pro 64.3 24 0.00052 30.6 6.2 18 51-68 34-51 (186)
40 COG1579 Zn-ribbon protein, pos 63.7 30 0.00064 32.0 7.2 27 85-111 85-111 (239)
41 PF10168 Nup88: Nuclear pore c 63.6 39 0.00084 35.9 9.0 26 85-110 635-660 (717)
42 PRK09458 pspB phage shock prot 62.4 55 0.0012 25.0 7.2 52 18-76 10-63 (75)
43 PRK11174 cysteine/glutathione 61.7 1.8E+02 0.004 29.3 14.1 13 27-39 168-180 (588)
44 PF07851 TMPIT: TMPIT-like pro 61.6 31 0.00066 33.3 7.2 14 131-144 126-139 (330)
45 PF06476 DUF1090: Protein of u 61.5 38 0.00083 27.7 6.8 17 59-75 71-87 (115)
46 TIGR02976 phageshock_pspB phag 60.9 21 0.00046 27.2 4.8 33 81-113 34-66 (75)
47 PRK01026 tetrahydromethanopter 60.3 64 0.0014 24.8 7.3 31 87-117 13-43 (77)
48 PF06637 PV-1: PV-1 protein (P 59.9 1.1E+02 0.0024 30.4 10.5 23 5-27 30-52 (442)
49 PF04420 CHD5: CHD5-like prote 59.9 16 0.00034 31.3 4.5 22 90-111 64-85 (161)
50 KOG4253 Tryptophan-rich basic 59.5 76 0.0016 27.7 8.4 7 40-46 34-40 (175)
51 PF14362 DUF4407: Domain of un 59.1 1.5E+02 0.0032 27.5 11.2 25 87-111 140-164 (301)
52 PF06667 PspB: Phage shock pro 58.5 64 0.0014 24.6 7.1 33 80-112 33-65 (75)
53 PRK05892 nucleoside diphosphat 58.4 63 0.0014 27.7 7.9 65 45-110 6-75 (158)
54 PRK04654 sec-independent trans 58.2 64 0.0014 29.3 8.2 14 12-25 8-21 (214)
55 PRK00888 ftsB cell division pr 58.0 90 0.002 24.9 8.3 13 9-21 5-17 (105)
56 PF09753 Use1: Membrane fusion 55.6 1.2E+02 0.0026 27.5 9.8 60 56-115 161-225 (251)
57 PF04799 Fzo_mitofusin: fzo-li 55.5 88 0.0019 27.5 8.3 26 87-112 142-167 (171)
58 PF03961 DUF342: Protein of un 54.7 66 0.0014 31.8 8.5 63 51-113 330-406 (451)
59 PRK09458 pspB phage shock prot 54.2 30 0.00065 26.4 4.6 31 81-111 34-64 (75)
60 PF04791 LMBR1: LMBR1-like mem 53.4 17 0.00037 35.7 4.1 24 52-75 200-223 (471)
61 PRK05431 seryl-tRNA synthetase 53.0 56 0.0012 32.3 7.7 58 54-111 34-95 (425)
62 TIGR02203 MsbA_lipidA lipid A 52.6 2.5E+02 0.0055 28.0 17.9 23 7-29 134-156 (571)
63 PF11932 DUF3450: Protein of u 52.3 58 0.0012 29.6 7.1 56 56-111 43-99 (251)
64 PF04210 MtrG: Tetrahydrometha 51.6 97 0.0021 23.4 6.9 19 89-107 12-30 (70)
65 PRK10573 type IV pilin biogene 51.4 2.3E+02 0.005 27.2 15.2 52 125-176 162-215 (399)
66 PRK10790 putative multidrug tr 50.9 1.8E+02 0.004 29.4 11.2 11 28-38 171-181 (592)
67 PF02388 FemAB: FemAB family; 50.8 70 0.0015 31.3 7.9 54 55-111 242-295 (406)
68 PRK13922 rod shape-determining 50.7 1.2E+02 0.0026 27.7 9.1 12 100-111 97-108 (276)
69 PF01616 Orbi_NS3: Orbivirus N 50.5 1.9E+02 0.0041 26.0 11.1 89 28-147 21-112 (195)
70 PF10845 DUF2576: Protein of u 50.4 22 0.00048 24.6 3.0 21 85-105 14-34 (48)
71 PF04156 IncA: IncA protein; 50.1 1.6E+02 0.0035 25.1 10.2 20 90-109 131-150 (191)
72 PF04645 DUF603: Protein of un 49.9 96 0.0021 27.4 7.6 67 33-110 92-159 (181)
73 PLN02678 seryl-tRNA synthetase 49.4 57 0.0012 32.7 7.1 58 54-111 39-100 (448)
74 TIGR01837 PHA_granule_1 poly(h 49.2 37 0.00081 27.7 4.9 24 87-110 94-117 (118)
75 PF07851 TMPIT: TMPIT-like pro 49.1 58 0.0013 31.5 6.8 26 175-201 200-225 (330)
76 PF12329 TMF_DNA_bd: TATA elem 49.0 1.1E+02 0.0024 22.9 7.5 18 62-79 12-29 (74)
77 KOG2264 Exostosin EXT1L [Signa 48.6 61 0.0013 33.9 7.1 24 88-111 127-150 (907)
78 PRK10263 DNA translocase FtsK; 48.5 1.8E+02 0.004 33.3 11.3 30 129-158 20-49 (1355)
79 KOG3088 Secretory carrier memb 48.3 26 0.00055 33.4 4.2 27 171-202 193-219 (313)
80 PF12709 Kinetocho_Slk19: Cent 48.1 1.3E+02 0.0029 23.6 8.1 27 85-111 45-71 (87)
81 TIGR02449 conserved hypothetic 48.1 1.1E+02 0.0023 22.8 6.6 41 58-104 3-43 (65)
82 PRK06800 fliH flagellar assemb 47.9 35 0.00076 30.6 4.7 30 44-78 25-54 (228)
83 PRK11176 lipid transporter ATP 47.7 2.4E+02 0.0052 28.3 11.4 17 8-24 146-162 (582)
84 TIGR02978 phageshock_pspC phag 47.5 61 0.0013 26.8 5.9 28 89-116 84-111 (121)
85 PF09798 LCD1: DNA damage chec 47.1 70 0.0015 33.7 7.5 45 52-105 5-49 (654)
86 PTZ00265 multidrug resistance 46.7 4.3E+02 0.0094 30.5 14.2 38 5-42 175-217 (1466)
87 PF12729 4HB_MCP_1: Four helix 46.7 1.4E+02 0.0031 23.7 8.1 35 82-116 102-136 (181)
88 PF03938 OmpH: Outer membrane 46.4 1.7E+02 0.0036 24.1 8.9 29 83-111 73-102 (158)
89 PF10498 IFT57: Intra-flagella 46.1 75 0.0016 30.9 7.2 55 53-107 289-353 (359)
90 KOG2629 Peroxisomal membrane a 45.9 1.4E+02 0.0031 28.4 8.7 74 36-110 103-182 (300)
91 COG1340 Uncharacterized archae 45.3 76 0.0016 30.2 6.8 59 51-109 37-96 (294)
92 TIGR01461 greB transcription e 45.2 1.3E+02 0.0028 25.7 7.8 63 44-107 2-70 (156)
93 PF04111 APG6: Autophagy prote 44.9 1.1E+02 0.0023 29.1 7.9 12 201-212 189-200 (314)
94 PF10079 DUF2317: Uncharacteri 44.8 2E+02 0.0044 29.6 10.3 101 34-138 408-522 (542)
95 KOG4253 Tryptophan-rich basic 44.7 2E+02 0.0044 25.2 8.7 16 61-76 40-55 (175)
96 TIGR03142 cytochro_ccmI cytoch 44.5 1.7E+02 0.0036 23.6 10.0 20 67-86 41-60 (117)
97 PF05008 V-SNARE: Vesicle tran 44.3 1.2E+02 0.0027 22.1 7.0 51 56-106 26-78 (79)
98 PF06584 DIRP: DIRP; InterPro 43.9 51 0.0011 26.8 4.8 37 35-76 37-73 (109)
99 PF06518 DUF1104: Protein of u 43.9 1.3E+02 0.0028 23.8 6.9 46 48-93 18-70 (93)
100 PRK01622 OxaA-like protein pre 43.8 1.4E+02 0.0029 27.6 8.2 17 63-79 92-108 (256)
101 PF07798 DUF1640: Protein of u 43.7 2.1E+02 0.0046 24.6 10.1 24 124-147 152-175 (177)
102 PF12725 DUF3810: Protein of u 43.2 1.3E+02 0.0029 28.6 8.3 58 9-76 57-116 (318)
103 PRK01885 greB transcription el 43.2 1.7E+02 0.0036 25.0 8.2 63 44-107 4-72 (157)
104 PF11239 DUF3040: Protein of u 43.0 1.2E+02 0.0025 22.9 6.5 28 84-114 4-31 (82)
105 KOG3915 Transcription regulato 43.0 84 0.0018 32.0 7.0 26 51-76 524-549 (641)
106 KOG3966 p53-mediated apoptosis 42.9 3.1E+02 0.0067 26.3 11.2 15 137-151 140-154 (360)
107 PF08172 CASP_C: CASP C termin 42.7 82 0.0018 29.1 6.6 49 56-110 80-128 (248)
108 KOG1029 Endocytic adaptor prot 42.2 80 0.0017 34.2 7.0 22 53-74 322-343 (1118)
109 KOG2662 Magnesium transporters 42.0 3.7E+02 0.008 26.9 11.8 37 135-171 348-387 (414)
110 PF11460 DUF3007: Protein of u 41.9 1.4E+02 0.0031 24.2 7.0 54 13-68 13-79 (104)
111 PF04111 APG6: Autophagy prote 41.5 1.4E+02 0.0031 28.3 8.2 14 131-144 171-184 (314)
112 TIGR02230 ATPase_gene1 F0F1-AT 41.0 1.9E+02 0.0041 23.2 8.7 44 143-201 49-92 (100)
113 KOG2391 Vacuolar sorting prote 40.9 1.4E+02 0.0029 29.2 7.8 23 54-76 213-235 (365)
114 COG3883 Uncharacterized protei 40.9 85 0.0018 29.5 6.4 53 54-106 44-97 (265)
115 PF14257 DUF4349: Domain of un 40.9 2.8E+02 0.006 25.1 12.8 64 48-111 125-191 (262)
116 PF05615 THOC7: Tho complex su 40.8 54 0.0012 27.0 4.7 48 52-99 78-125 (139)
117 PRK10722 hypothetical protein; 40.6 70 0.0015 29.7 5.7 12 90-101 198-209 (247)
118 PF05529 Bap31: B-cell recepto 40.6 1.4E+02 0.003 25.9 7.4 25 86-110 158-182 (192)
119 TIGR01149 mtrG N5-methyltetrah 39.9 1.6E+02 0.0035 22.2 6.7 22 88-109 11-32 (70)
120 COG3937 Uncharacterized conser 39.8 1.6E+02 0.0035 24.0 7.0 23 89-111 83-105 (108)
121 PF00664 ABC_membrane: ABC tra 39.6 2.2E+02 0.0049 23.7 10.5 32 7-38 130-161 (275)
122 PF08657 DASH_Spc34: DASH comp 39.1 1.4E+02 0.003 27.8 7.5 22 88-109 238-259 (259)
123 PF06409 NPIP: Nuclear pore co 39.0 1.7E+02 0.0036 27.3 7.7 31 87-117 153-183 (265)
124 PRK06342 transcription elongat 38.8 77 0.0017 27.3 5.4 56 48-111 31-86 (160)
125 PF05055 DUF677: Protein of un 38.7 3.5E+02 0.0075 26.2 10.4 18 25-42 211-228 (336)
126 PLN02320 seryl-tRNA synthetase 38.6 1.6E+02 0.0036 30.0 8.5 55 56-110 101-158 (502)
127 PF13094 CENP-Q: CENP-Q, a CEN 38.3 1.4E+02 0.003 25.2 6.9 64 48-111 20-84 (160)
128 TIGR00954 3a01203 Peroxysomal 38.1 4.8E+02 0.011 27.1 15.1 47 56-109 273-319 (659)
129 TIGR03007 pepcterm_ChnLen poly 38.0 2.4E+02 0.0053 27.8 9.6 26 86-111 352-377 (498)
130 KOG3863 bZIP transcription fac 37.9 65 0.0014 33.6 5.6 44 34-77 486-533 (604)
131 PRK11546 zraP zinc resistance 37.8 2E+02 0.0043 24.5 7.7 19 86-104 86-104 (143)
132 PF13870 DUF4201: Domain of un 37.8 2.6E+02 0.0056 23.9 9.0 26 87-112 150-175 (177)
133 TIGR00958 3a01208 Conjugate Tr 37.8 5E+02 0.011 27.2 18.0 22 8-29 282-303 (711)
134 PF10359 Fmp27_WPPW: RNA pol I 37.8 98 0.0021 31.0 6.8 54 56-109 164-220 (475)
135 PF09006 Surfac_D-trimer: Lung 37.7 42 0.00091 23.3 2.9 21 92-112 2-22 (46)
136 PF14728 PHTB1_C: PTHB1 C-term 37.4 3.7E+02 0.008 26.4 10.5 50 32-83 197-246 (377)
137 PF11262 Tho2: Transcription f 37.3 1E+02 0.0022 29.0 6.5 18 186-203 154-171 (298)
138 PF08278 DnaG_DnaB_bind: DNA p 37.0 1.1E+02 0.0025 24.2 5.9 27 68-94 100-126 (127)
139 PF15361 RIC3: Resistance to i 36.8 1E+02 0.0023 26.3 5.9 22 87-108 129-150 (152)
140 PF11932 DUF3450: Protein of u 36.7 1.2E+02 0.0026 27.5 6.7 22 57-78 37-58 (251)
141 TIGR02894 DNA_bind_RsfA transc 36.7 2.2E+02 0.0047 24.9 7.8 21 89-109 111-131 (161)
142 KOG4136 Predicted mitochondria 36.6 3.1E+02 0.0068 24.5 10.3 72 173-261 62-133 (198)
143 PHA03048 IMV membrane protein; 36.6 40 0.00086 26.7 2.9 23 3-25 46-68 (93)
144 PRK13729 conjugal transfer pil 36.4 1.4E+02 0.003 30.4 7.5 52 56-107 67-122 (475)
145 PF11917 DUF3435: Protein of u 36.1 1.1E+02 0.0025 29.8 6.8 12 41-53 270-281 (418)
146 COG4372 Uncharacterized protei 36.1 1.2E+02 0.0027 30.2 6.9 25 89-113 259-283 (499)
147 PRK08307 stage III sporulation 35.8 2.2E+02 0.0048 24.5 7.9 43 90-141 126-168 (171)
148 PF08581 Tup_N: Tup N-terminal 35.4 2E+02 0.0044 22.0 8.4 27 87-113 37-63 (79)
149 TIGR02833 spore_III_AB stage I 35.1 2.3E+02 0.005 24.4 7.9 43 90-141 125-167 (170)
150 PF06694 Plant_NMP1: Plant nuc 34.8 3.8E+02 0.0083 25.8 9.7 89 28-123 151-239 (325)
151 KOG4538 Predicted coiled-coil 34.6 1.5E+02 0.0033 24.5 6.2 21 57-77 50-70 (130)
152 PF08006 DUF1700: Protein of u 34.6 2.9E+02 0.0063 23.5 15.3 22 183-204 149-170 (181)
153 PF05767 Pox_A14: Poxvirus vir 34.6 45 0.00098 26.4 3.0 23 3-25 47-69 (92)
154 PF04508 Pox_A_type_inc: Viral 34.5 49 0.0011 19.7 2.4 18 89-106 1-18 (23)
155 KOG0972 Huntingtin interacting 34.5 91 0.002 30.0 5.5 25 86-110 339-363 (384)
156 KOG0500 Cyclic nucleotide-gate 34.5 88 0.0019 32.0 5.7 23 94-116 466-488 (536)
157 KOG3119 Basic region leucine z 34.5 1.1E+02 0.0024 28.4 6.2 62 48-111 190-251 (269)
158 PLN03086 PRLI-interacting fact 34.3 1.2E+02 0.0026 31.5 6.8 14 104-117 62-75 (567)
159 PF03715 Noc2: Noc2p family; 34.2 1E+02 0.0023 29.1 6.0 63 30-99 223-285 (299)
160 PF07106 TBPIP: Tat binding pr 34.1 2.3E+02 0.0051 23.9 7.7 26 86-111 113-138 (169)
161 PF09548 Spore_III_AB: Stage I 34.0 2.4E+02 0.0052 24.1 7.8 43 90-141 125-167 (170)
162 KOG4050 Glutamate transporter 33.4 98 0.0021 27.2 5.1 37 2-38 105-145 (188)
163 PF05991 NYN_YacP: YacP-like N 33.3 85 0.0018 26.9 4.9 49 48-96 118-166 (166)
164 cd00179 SynN Syntaxin N-termin 33.3 2.1E+02 0.0045 23.3 7.1 65 52-116 45-115 (151)
165 PF09925 DUF2157: Predicted me 33.1 2.8E+02 0.006 22.9 12.8 83 130-248 34-116 (145)
166 PF03908 Sec20: Sec20; InterP 33.1 2.2E+02 0.0048 21.7 9.7 17 132-148 72-88 (92)
167 PRK11637 AmiB activator; Provi 33.0 1.4E+02 0.0031 29.2 6.9 15 90-104 234-248 (428)
168 PF02403 Seryl_tRNA_N: Seryl-t 33.0 2.3E+02 0.0051 21.9 9.1 58 54-111 35-96 (108)
169 KOG4571 Activating transcripti 32.6 1.2E+02 0.0025 29.0 5.9 24 87-110 246-269 (294)
170 TIGR00414 serS seryl-tRNA synt 32.5 2.6E+02 0.0055 27.6 8.6 21 90-110 77-97 (418)
171 PF03962 Mnd1: Mnd1 family; I 32.4 1.5E+02 0.0032 26.1 6.3 22 89-110 110-131 (188)
172 PF13268 DUF4059: Protein of u 32.3 2.1E+02 0.0045 21.7 6.1 25 220-244 43-67 (72)
173 KOG4005 Transcription factor X 32.3 75 0.0016 29.6 4.5 59 46-109 48-110 (292)
174 KOG2315 Predicted translation 31.9 90 0.0019 32.2 5.3 43 59-103 515-560 (566)
175 PF09177 Syntaxin-6_N: Syntaxi 31.7 2.4E+02 0.0052 21.7 8.2 56 56-111 6-61 (97)
176 COG4026 Uncharacterized protei 31.7 2.8E+02 0.006 25.8 8.0 13 66-78 153-165 (290)
177 TIGR02894 DNA_bind_RsfA transc 31.6 2.6E+02 0.0056 24.4 7.4 19 90-108 126-144 (161)
178 PRK10697 DNA-binding transcrip 31.4 1.6E+02 0.0035 24.3 5.9 71 16-116 38-108 (118)
179 PF03962 Mnd1: Mnd1 family; I 31.3 2.5E+02 0.0054 24.7 7.5 21 92-112 106-126 (188)
180 TIGR01069 mutS2 MutS2 family p 31.1 1.2E+02 0.0027 32.4 6.5 12 31-42 493-504 (771)
181 KOG0345 ATP-dependent RNA heli 31.1 1.3E+02 0.0029 30.7 6.4 30 25-55 442-477 (567)
182 KOG4797 Transcriptional regula 30.8 78 0.0017 26.0 3.9 26 86-111 64-89 (123)
183 PF12325 TMF_TATA_bd: TATA ele 30.7 3.1E+02 0.0066 22.6 7.8 26 89-114 68-93 (120)
184 KOG0981 DNA topoisomerase I [R 30.4 1.5E+02 0.0033 31.1 6.7 65 53-117 634-704 (759)
185 PRK11160 cysteine/glutathione 30.4 5.9E+02 0.013 25.8 14.6 17 8-24 141-157 (574)
186 KOG0980 Actin-binding protein 30.1 1.2E+02 0.0025 33.2 6.0 25 87-111 492-516 (980)
187 PF10828 DUF2570: Protein of u 30.1 2.8E+02 0.0061 22.0 8.2 20 89-108 60-79 (110)
188 smart00503 SynN Syntaxin N-ter 30.1 2.6E+02 0.0055 21.5 7.5 61 54-114 49-114 (117)
189 TIGR02132 phaR_Bmeg polyhydrox 29.9 2.7E+02 0.0058 24.8 7.3 58 54-111 78-136 (189)
190 PRK00106 hypothetical protein; 29.3 2.7E+02 0.0059 28.7 8.4 8 16-23 17-24 (535)
191 PF09744 Jnk-SapK_ap_N: JNK_SA 29.3 2.5E+02 0.0054 24.2 7.0 24 86-109 86-109 (158)
192 TIGR02978 phageshock_pspC phag 29.3 3E+02 0.0064 22.7 7.2 18 87-104 89-106 (121)
193 COG1340 Uncharacterized archae 29.2 2.3E+02 0.005 27.0 7.3 20 56-75 194-213 (294)
194 PF12999 PRKCSH-like: Glucosid 29.1 3.7E+02 0.008 23.7 8.1 16 92-107 156-171 (176)
195 PF10146 zf-C4H2: Zinc finger- 29.0 2.1E+02 0.0047 26.1 6.9 23 52-74 36-58 (230)
196 PF04787 Pox_H7: Late protein 29.0 3.8E+02 0.0081 23.1 8.8 76 38-117 59-139 (147)
197 PF11180 DUF2968: Protein of u 29.0 2.2E+02 0.0047 25.5 6.7 17 89-105 168-184 (192)
198 PF14182 YgaB: YgaB-like prote 28.9 1.5E+02 0.0033 22.9 4.9 45 68-116 23-67 (79)
199 KOG2911 Uncharacterized conser 28.9 1.3E+02 0.0028 30.2 5.8 28 53-80 238-265 (439)
200 KOG3990 Uncharacterized conser 28.5 1.7E+02 0.0037 27.5 6.2 55 57-111 238-296 (305)
201 PF02932 Neur_chan_memb: Neuro 28.4 1.4E+02 0.003 24.0 5.2 23 125-147 215-237 (237)
202 TIGR01462 greA transcription e 28.4 2.6E+02 0.0056 23.4 6.9 63 48-110 2-70 (151)
203 PF11690 DUF3287: Protein of u 28.3 2.2E+02 0.0047 23.3 6.1 22 86-107 60-83 (109)
204 PRK13729 conjugal transfer pil 28.3 1.4E+02 0.0029 30.4 5.9 23 89-111 97-119 (475)
205 PF05557 MAD: Mitotic checkpoi 28.3 1.8E+02 0.0038 30.7 7.1 58 59-116 570-633 (722)
206 PRK10780 periplasmic chaperone 28.2 3.7E+02 0.008 22.7 9.5 7 82-88 79-85 (165)
207 PF06933 SSP160: Special lobe- 28.2 1.4E+02 0.003 30.1 5.8 46 62-107 389-434 (756)
208 KOG2881 Predicted membrane pro 28.0 1.4E+02 0.003 28.3 5.5 7 34-40 145-151 (294)
209 TIGR01554 major_cap_HK97 phage 28.0 1.5E+02 0.0034 28.3 6.2 22 89-110 41-62 (378)
210 TIGR01010 BexC_CtrB_KpsE polys 27.9 4.3E+02 0.0093 25.0 9.1 25 87-111 276-300 (362)
211 KOG0979 Structural maintenance 27.8 1.9E+02 0.004 32.2 7.1 11 32-42 147-157 (1072)
212 KOG1690 emp24/gp25L/p24 family 27.8 2.9E+02 0.0062 25.1 7.2 24 54-77 138-161 (215)
213 PHA02898 virion envelope prote 27.6 70 0.0015 25.3 3.0 23 3-25 47-69 (92)
214 PF11431 Transport_MerF: Membr 27.6 46 0.00099 23.1 1.7 14 19-32 3-16 (46)
215 PF05384 DegS: Sensor protein 27.3 3.2E+02 0.0069 23.6 7.3 25 56-80 35-59 (159)
216 PF05266 DUF724: Protein of un 27.3 2.2E+02 0.0048 25.2 6.5 23 89-111 159-181 (190)
217 PRK13657 cyclic beta-1,2-gluca 27.2 6.6E+02 0.014 25.3 14.3 156 3-174 142-306 (588)
218 PF00804 Syntaxin: Syntaxin; 26.9 2.6E+02 0.0057 20.6 6.4 53 51-103 3-59 (103)
219 PLN02777 photosystem I P subun 26.7 2.8E+02 0.0061 24.3 6.8 32 136-167 98-129 (167)
220 PRK02793 phi X174 lysis protei 26.7 2.7E+02 0.0059 20.7 7.6 54 52-111 5-58 (72)
221 PF10205 KLRAQ: Predicted coil 26.6 3.2E+02 0.0068 22.1 6.7 24 88-111 46-69 (102)
222 PF15188 CCDC-167: Coiled-coil 26.6 3.1E+02 0.0068 21.4 10.0 52 59-110 9-64 (85)
223 TIGR00999 8a0102 Membrane Fusi 26.6 2.6E+02 0.0055 24.7 7.0 19 90-108 55-73 (265)
224 COG2274 SunT ABC-type bacterio 26.5 4.4E+02 0.0096 28.1 9.6 20 25-44 296-315 (709)
225 PF12725 DUF3810: Protein of u 26.5 1.8E+02 0.0039 27.7 6.2 43 160-202 6-49 (318)
226 PF11464 Rbsn: Rabenosyn Rab b 26.4 2.1E+02 0.0046 19.4 4.9 17 90-106 23-39 (42)
227 COG4842 Uncharacterized protei 26.3 3.1E+02 0.0068 21.3 6.9 69 48-116 7-88 (97)
228 smart00055 FCH Fes/CIP4 homolo 26.3 2.6E+02 0.0057 20.4 6.8 17 87-103 66-82 (87)
229 PRK06286 putative monovalent c 26.1 83 0.0018 24.8 3.2 32 4-36 3-34 (91)
230 smart00803 TAF TATA box bindin 25.9 2.4E+02 0.0051 20.5 5.4 46 32-78 3-50 (65)
231 PF07200 Mod_r: Modifier of ru 25.8 2.3E+02 0.0051 23.3 6.2 27 90-116 97-123 (150)
232 PRK11020 hypothetical protein; 25.6 3.7E+02 0.008 22.2 6.9 24 87-110 29-52 (118)
233 PF06785 UPF0242: Uncharacteri 25.6 3.2E+02 0.007 26.8 7.6 15 8-22 44-58 (401)
234 PF15007 CEP44: Centrosomal sp 25.6 1.9E+02 0.0042 24.3 5.5 38 37-76 78-121 (131)
235 KOG1465 Translation initiation 25.5 1.9E+02 0.0042 28.0 6.1 69 25-104 25-94 (353)
236 KOG1103 Predicted coiled-coil 25.4 2.3E+02 0.0049 28.1 6.6 25 87-111 271-295 (561)
237 PLN00171 photosystem light-ha 25.3 78 0.0017 30.6 3.5 39 29-75 52-91 (324)
238 PRK11637 AmiB activator; Provi 25.2 2.4E+02 0.0052 27.6 7.0 11 97-107 234-244 (428)
239 PRK02201 putative inner membra 25.2 2E+02 0.0042 28.1 6.3 38 63-103 161-198 (357)
240 PF09726 Macoilin: Transmembra 25.2 1.8E+02 0.0039 30.9 6.5 23 89-111 587-609 (697)
241 KOG4403 Cell surface glycoprot 25.2 2.8E+02 0.0061 28.2 7.3 20 57-76 251-270 (575)
242 PF10669 Phage_Gp23: Protein g 25.1 3.7E+02 0.0081 21.7 7.3 11 29-39 24-34 (121)
243 smart00787 Spc7 Spc7 kinetocho 25.0 1.7E+02 0.0037 27.9 5.7 13 50-62 203-215 (312)
244 KOG0982 Centrosomal protein Nu 25.0 2.4E+02 0.0052 28.5 6.8 49 56-104 216-265 (502)
245 PF06156 DUF972: Protein of un 25.0 3.6E+02 0.0079 21.7 6.8 21 55-75 8-28 (107)
246 PF07058 Myosin_HC-like: Myosi 24.7 1.7E+02 0.0038 28.2 5.6 27 85-111 62-88 (351)
247 KOG0380 Sterol O-acyltransfera 24.3 5.1E+02 0.011 26.7 9.2 92 109-206 294-389 (523)
248 PF02183 HALZ: Homeobox associ 24.2 2.4E+02 0.0052 19.2 5.0 18 60-77 3-20 (45)
249 PRK02463 OxaA-like protein pre 24.1 3.9E+02 0.0084 25.5 7.9 18 62-79 91-108 (307)
250 PF06013 WXG100: Proteins of 1 23.9 2.6E+02 0.0057 19.6 9.3 29 48-76 4-32 (86)
251 PF03449 GreA_GreB_N: Transcri 23.9 3.1E+02 0.0068 20.5 8.4 61 48-110 6-67 (74)
252 PF07889 DUF1664: Protein of u 23.9 4.3E+02 0.0092 22.0 7.9 22 88-109 88-109 (126)
253 PF12808 Mto2_bdg: Micro-tubul 23.9 2.7E+02 0.0059 19.7 5.9 46 65-110 4-50 (52)
254 TIGR01404 FlhB_rel_III type II 23.9 2.1E+02 0.0046 27.5 6.2 50 12-61 174-227 (342)
255 cd07599 BAR_Rvs167p The Bin/Am 23.8 5E+02 0.011 22.8 13.7 60 84-154 144-203 (216)
256 TIGR03375 type_I_sec_LssB type 23.6 8.3E+02 0.018 25.3 11.2 127 4-148 262-388 (694)
257 COG2825 HlpA Outer membrane pr 23.6 3.4E+02 0.0074 23.5 6.9 14 62-75 55-68 (170)
258 TIGR03752 conj_TIGR03752 integ 23.4 3.8E+02 0.0082 27.3 8.0 18 208-225 233-250 (472)
259 PF09403 FadA: Adhesion protei 23.2 2.7E+02 0.0059 23.2 5.9 21 90-110 60-80 (126)
260 PHA02680 ORF090 IMV phosphoryl 23.0 91 0.002 24.6 2.8 23 3-25 48-70 (91)
261 PF13150 DUF3989: Protein of u 22.9 90 0.0019 24.2 2.8 38 179-216 34-72 (85)
262 PF13864 Enkurin: Calmodulin-b 22.9 3.6E+02 0.0079 20.9 6.9 27 85-111 70-96 (98)
263 KOG4460 Nuclear pore complex, 22.9 2.5E+02 0.0055 29.3 6.7 25 87-111 660-684 (741)
264 PF05546 She9_MDM33: She9 / Md 22.8 3.1E+02 0.0067 24.9 6.6 50 59-111 65-114 (207)
265 PF12805 FUSC-like: FUSC-like 22.8 3.6E+02 0.0078 24.7 7.4 55 49-104 204-258 (284)
266 PLN03223 Polycystin cation cha 22.8 1.6E+02 0.0035 33.9 5.6 58 54-111 1543-1600(1634)
267 COG3167 PilO Tfp pilus assembl 22.8 3.1E+02 0.0068 24.8 6.5 48 66-116 53-100 (211)
268 PF07798 DUF1640: Protein of u 22.7 4.9E+02 0.011 22.3 7.8 15 131-145 155-169 (177)
269 KOG3859 Septins (P-loop GTPase 22.6 3.8E+02 0.0082 26.0 7.4 24 87-110 375-398 (406)
270 TIGR02204 MsbA_rel ABC transpo 22.6 7.8E+02 0.017 24.6 11.6 126 5-148 136-261 (576)
271 TIGR01005 eps_transp_fam exopo 22.4 7.7E+02 0.017 25.9 10.5 23 87-109 374-396 (754)
272 KOG3584 cAMP response element 22.4 2.3E+02 0.0049 27.3 5.8 41 62-111 294-334 (348)
273 PF01166 TSC22: TSC-22/dip/bun 22.4 1E+02 0.0022 22.5 2.8 25 87-111 12-36 (59)
274 PF11174 DUF2970: Protein of u 22.4 1.7E+02 0.0036 21.0 3.9 27 125-151 29-55 (56)
275 PRK01637 hypothetical protein; 22.3 6.1E+02 0.013 23.3 12.6 33 209-242 195-227 (286)
276 TIGR01541 tape_meas_lam_C phag 22.3 5.1E+02 0.011 24.9 8.4 18 94-111 128-145 (332)
277 PF03245 Phage_lysis: Bacterio 22.3 3.3E+02 0.0071 22.3 6.2 25 83-107 36-60 (125)
278 COG1938 Archaeal enzymes of AT 22.0 1.7E+02 0.0036 27.2 4.9 28 48-75 204-231 (244)
279 PRK05771 V-type ATP synthase s 22.0 3.8E+02 0.0082 27.8 8.1 62 34-109 59-127 (646)
280 PF05644 Miff: Mitochondrial a 22.0 2.8E+02 0.0061 25.7 6.3 19 93-111 199-217 (246)
281 PF13942 Lipoprotein_20: YfhG 21.9 2.8E+02 0.0062 24.5 6.0 13 63-75 131-143 (179)
282 PRK11176 lipid transporter ATP 21.8 8.2E+02 0.018 24.5 19.1 8 12-19 159-166 (582)
283 COG4372 Uncharacterized protei 21.7 3E+02 0.0065 27.6 6.7 23 89-111 266-288 (499)
284 KOG3819 Uncharacterized conser 21.7 1.9E+02 0.0041 29.4 5.4 28 84-111 134-161 (513)
285 PRK10803 tol-pal system protei 21.7 6.3E+02 0.014 23.2 10.7 19 59-77 48-66 (263)
286 PF10046 BLOC1_2: Biogenesis o 21.7 3.9E+02 0.0086 20.8 7.7 23 90-112 74-96 (99)
287 cd07643 I-BAR_IMD_MIM Inverse 21.6 5.8E+02 0.013 23.6 8.2 15 52-66 123-137 (231)
288 PF03189 Otopetrin: Otopetrin; 21.5 5.2E+02 0.011 25.7 8.6 16 131-146 240-255 (441)
289 PRK12705 hypothetical protein; 21.5 4.7E+02 0.01 26.8 8.4 55 50-110 69-123 (508)
290 PRK00409 recombination and DNA 21.5 2.2E+02 0.0048 30.5 6.3 13 30-42 497-509 (782)
291 PF08285 DPM3: Dolichol-phosph 21.4 1.6E+02 0.0034 23.1 4.0 24 15-38 39-62 (91)
292 PF14723 SSFA2_C: Sperm-specif 21.3 5.8E+02 0.013 22.6 8.3 43 52-94 106-150 (179)
293 PF02403 Seryl_tRNA_N: Seryl-t 21.1 2.7E+02 0.0058 21.6 5.4 53 59-111 33-89 (108)
294 PF10329 DUF2417: Region of un 20.8 2.6E+02 0.0057 25.7 5.9 32 129-161 36-67 (232)
295 PF07047 OPA3: Optic atrophy 3 20.7 2.2E+02 0.0048 23.6 5.0 53 21-77 82-134 (134)
296 PF04678 DUF607: Protein of un 20.7 5.5E+02 0.012 22.1 7.9 25 87-111 62-86 (180)
297 PF12065 DUF3545: Protein of u 20.6 98 0.0021 22.6 2.4 12 83-95 23-34 (59)
298 COG1792 MreC Cell shape-determ 20.6 3.8E+02 0.0083 25.1 7.1 26 89-114 83-108 (284)
299 PF01405 PsbT: Photosystem II 20.6 1.8E+02 0.0039 18.3 3.2 19 6-24 4-22 (29)
300 PF15086 UPF0542: Uncharacteri 20.5 1.3E+02 0.0029 22.8 3.2 20 23-42 22-41 (74)
301 PLN02764 glycosyltransferase f 20.4 2.6E+02 0.0055 28.1 6.2 53 48-103 392-448 (453)
302 cd07588 BAR_Amphiphysin The Bi 20.3 4.2E+02 0.0091 23.8 7.0 21 87-107 137-157 (211)
303 KOG0980 Actin-binding protein 20.3 3.5E+02 0.0076 29.8 7.3 27 85-111 497-523 (980)
304 TIGR01554 major_cap_HK97 phage 20.2 2.8E+02 0.0061 26.5 6.3 10 59-68 10-19 (378)
305 PTZ00454 26S protease regulato 20.0 3.7E+02 0.0079 26.4 7.1 21 89-109 43-63 (398)
306 PF07028 DUF1319: Protein of u 20.0 3.9E+02 0.0084 22.4 6.1 61 48-112 17-83 (126)
307 PF13256 DUF4047: Domain of un 20.0 5E+02 0.011 21.7 6.7 30 85-114 67-96 (125)
No 1
>PF04791 LMBR1: LMBR1-like membrane protein; InterPro: IPR006876 This group of uncharacterised proteins have a conserved C-terminal region which is found in LMBR1 and in the lipocalin-1 receptor. LMBR1 was thought to play a role in preaxial polydactyly, but recent evidence now suggests this not to be the case [].
Probab=99.96 E-value=6.1e-29 Score=242.38 Aligned_cols=259 Identities=25% Similarity=0.378 Sum_probs=184.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHhhcccCCCcccChHHHHHHHHHHHHHHHHHHHH------------
Q 024062 3 TTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATELGKKARELKKA------------ 70 (273)
Q Consensus 3 vsf~~f~i~~l~~iG~~lfv~y~gvGlaalPi~LI~~f~~Rpk~~is~~~~~~~~~~i~~~~~~l~e~------------ 70 (273)
.++..|++|+..+.||+++++|+|+||+++|.++++.+.+..+..-..++..+.+.++++..+++.+.
T Consensus 155 ~~~~~~~ial~~~~Gl~l~i~~~g~Glv~iP~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 234 (471)
T PF04791_consen 155 SSLLPFLIALSNFWGLFLFIILLGYGLVAIPRDLWRSSNSYFRAAKLEDEAAEAKEKLDDIIEKLRRLRRILRDVEELRS 234 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHhccccchhhhhcchhHHHHHHHHHHHHHHHHHHhhhcccHHHHH
Confidence 46789999999999999999999999999999999999871111011111122222222222222211
Q ss_pred ---------HHHHHhh-------hccCCcChHhHHHHHHHHHHHHHHHHHHHHHHHhcccCccc------------cchh
Q 024062 71 ---------ADTLHQE-------ERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKA------------ETSW 122 (273)
Q Consensus 71 ---------~~~l~~~-------~~~~~~~~k~rr~~~~l~~~~~~Le~~~~~le~~y~~~~~~------------~~~~ 122 (273)
.+++++. .++.+.++++++..+..++.+..++++.+.+++.+++.++. ...|
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 314 (471)
T PF04791_consen 235 ELDTILNELPKEIQELIESSNQEERSTNLGRSWRKILDSENKLLLLLKRDLKSLQRLYRREEQWKTLVLSRFFRNLRFQW 314 (471)
T ss_pred HHHHHHHhhHHHHHHHHhccccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccchHH
Confidence 1111110 00011122222222333333333333333333332221111 1134
Q ss_pred hh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024062 123 AL-TVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGTAAFAFFCFYLLLAVIAGAMML 201 (273)
Q Consensus 123 ~~-~~l~~~~kLl~Gii~lllSi~w~i~iil~~i~k~~~~~fLN~~fi~l~~~fpll~~i~~~~~~~Yll~cs~~G~~~~ 201 (273)
.| ..+.++++.++|+++.++|++|+.|-+.....+ +++.+++..++.++.++.++.+++++|+.+||.+|+.++
T Consensus 315 ~~~~~l~~~~~~il~Vi~~ilSlli~~sEl~~~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~l~Ym~~ct~~glf~~ 389 (471)
T PF04791_consen 315 IWYCYLRPYVYKILAVIFAILSLLIVWSELTFFFRS-----FLFSIFISSDSKFGFLGQLLSFLFLFYMCFCTYYGLFKL 389 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHhHHhhh
Confidence 45 456677999999999999999999999777655 899999999999998999999999999999999999999
Q ss_pred hhHhhheeeeecccCCChhhhHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhhHHHHHHHhhhccccccccc
Q 024062 202 GLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQFCSTAFGYYAQATAAQEIFGHTLESLRGIKYLY 272 (273)
Q Consensus 202 GiR~~~~~i~pmr~~~T~~nslLfn~~Llll~s~av~qf~~~aF~~Ya~~t~i~~~f~~~v~~l~~~~~~~ 272 (273)
|+ ++.|+|+||+|++++.|+|+++++..+.+..+|+..+|..|+..|+.+++ .+++++.|.|+++
T Consensus 390 ~~----f~~y~l~p~~ts~~~sL~f~a~~l~Rl~~PL~fNfl~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 454 (471)
T PF04791_consen 390 KI----FRFYPLVPHHTSDNSSLFFSAIYLCRLAPPLCFNFLGMIRYDSTTSFNNI--VQIQSLLGLGFFY 454 (471)
T ss_pred hh----heeccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccc--cccccceecchHH
Confidence 97 99999999999999999999999999999999999999999999999988 6677999888854
No 2
>KOG2296 consensus Integral membrane protein [General function prediction only]
Probab=97.99 E-value=0.00097 Score=67.66 Aligned_cols=226 Identities=17% Similarity=0.155 Sum_probs=142.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHhh--cccCCCc-ccChHHHHHHHHHHHHHHHHHHHHHHHHHhhh--cc-
Q 024062 7 EYVVALATIVGSVLFSIFGGVGIACLPLGLIFS--FIRRPKA-VITRSQYIKEATELGKKARELKKAADTLHQEE--RS- 80 (273)
Q Consensus 7 ~f~i~~l~~iG~~lfv~y~gvGlaalPi~LI~~--f~~Rpk~-~is~~~~~~~~~~i~~~~~~l~e~~~~l~~~~--~~- 80 (273)
.++++..-++|-++-++--|.||+-+|-++=+- .-+|-|+ --..+.++.++++.+++++...++.+.+.+.. +.
T Consensus 169 e~~~s~SntwGL~~~i~LLG~gLvevP~slW~~~~~~~~~kk~y~~~akia~~~a~aee~~~~i~~~~qa~~~~~~~~~~ 248 (673)
T KOG2296|consen 169 EIVMSASNTWGLFLLIFLLGFGLVEVPRSLWKNADWTTRLKKLYFKIAKIAVEKAEAEEEVSDIYVKLQALSTSMSNRDP 248 (673)
T ss_pred HHHHHHhHHHHHHHHHHHHhhhHhhccHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc
Confidence 356677777788888888999999999999873 1122111 01123445566666666666665555554311 10
Q ss_pred -------------------------CC-c------ChHhHHH--------------HHHHHHHHHHHHHHHHHH---HHh
Q 024062 81 -------------------------GS-K------GRKWRKN--------------VKSVEKELLQLEEDVKLL---EEM 111 (273)
Q Consensus 81 -------------------------~~-~------~~k~rr~--------------~~~l~~~~~~Le~~~~~l---e~~ 111 (273)
|. + +.++.++ +++.+.+......+...+ ..+
T Consensus 249 ~r~~~~~il~~~~~~~~~~~~~~~~~~~~a~~~~s~~~~e~~~~~l~~~~i~a~qt~~~~~a~w~~~V~~~l~le~~~~~ 328 (673)
T KOG2296|consen 249 MRPYMNTILAKLAKMFREDPFFKPQGTDLAENDMSSPTSEKSLATLHKHLINALQTLYRYKAEWLVYVTEALVLEDTAKN 328 (673)
T ss_pred cccchHHHHHhhHhhhCCcccccccccCCccCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00 0 1111111 111122222222222222 222
Q ss_pred cccCccc-------c-------chhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHhhhhhh
Q 024062 112 YPQGEKA-------E-------TSWAL-TVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWG 176 (273)
Q Consensus 112 y~~~~~~-------~-------~~~~~-~~l~~~~kLl~Gii~lllSi~w~i~iil~~i~k~~~~~fLN~~fi~l~~~fp 176 (273)
++.+.++ . ..|.| ..+..+++.+++++-.+.|.+++++=.-....++.+.++.+-+....++..=
T Consensus 329 ~~Sas~~~~~~~~r~~~~~~~~~~~~Wy~~l~~~f~~~~~i~~~~Ms~~Vl~sE~tf~~~~~~Lsl~a~vi~~~~~~~~~ 408 (673)
T KOG2296|consen 329 YRSASGRKYLESSRATKCLLDSVEFMWYCILKKPFQMVLAIVMAIMSAAILLSEATFLLSKYDLSLFAIVISSAKSDELT 408 (673)
T ss_pred hccccCceeecccccccccCcchhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhheeeeccchHHHHHHHHHhcchhH
Confidence 2222221 0 12334 3556789999999999999988888876777787788888888888876543
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHhhheeeeecccC-CChhhhHHHHHHHHHHHHHHHH
Q 024062 177 LLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWG-ATLMNSFLFNVGLILLCSISVI 238 (273)
Q Consensus 177 ll~~i~~~~~~~Yll~cs~~G~~~~GiR~~~~~i~pmr~~-~T~~nslLfn~~Llll~s~av~ 238 (273)
-++.-.++..|+..|+.+-.++++++ ..|-+-|+ +|--+|+||-+.++.=.+++++
T Consensus 409 --i~~~af~~l~Y~~~ctY~sl~r~~~~----~yY~L~P~~qTn~~SLlfs~~llCRLTPPiC 465 (673)
T KOG2296|consen 409 --VQFVAFVPLVYMCYCTYYSLFRIQFL----MYYSLTPRRQTNEVSLLFSASLLCRLTPPIC 465 (673)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHH----HhheeccccccchHHHHHHHHHHHhcCchhh
Confidence 35556677889999999999999987 78888888 9999999999998876665554
No 3
>KOG3722 consensus Lipocalin-interacting membrane receptor (LIMR) [Defense mechanisms]
Probab=97.58 E-value=0.00062 Score=66.41 Aligned_cols=217 Identities=21% Similarity=0.309 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHhhcccCCCcccCh-HH-HHH---HHHHHHHHHHHHHHHHHHHHhhhccCC
Q 024062 8 YVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITR-SQ-YIK---EATELGKKARELKKAADTLHQEERSGS 82 (273)
Q Consensus 8 f~i~~l~~iG~~lfv~y~gvGlaalPi~LI~~f~~Rpk~~is~-~~-~~~---~~~~i~~~~~~l~e~~~~l~~~~~~~~ 82 (273)
|+-.|.+++|..+..+.|-+|++-+ .+.-..+.-||+. .++ .| ... +....+++...-.+.+--+-...+.|.
T Consensus 198 ~lYSCvSflg~~lllicTp~g~~rm-f~v~~~~lvkp~~-l~d~~e~~~~~~~ee~s~~r~l~~~~~~~~~i~ds~~~~~ 275 (538)
T KOG3722|consen 198 YLYSCVSFLGVLLLLICTPYGFARM-FSVAGQLLVKPKL-LEDLTEQVYASGIEEASLERRLLNTDDEEMGINDSGDDGD 275 (538)
T ss_pred HHHHHHHHHHHHHHHhcChhhHHHH-HHHhhhheechhH-HHHHHHhhhhhhcchHHHHHHHhcccchhcccccccccCC
Confidence 6778999999999999998888755 3444555556764 211 11 000 111111111110011111111111111
Q ss_pred c-------C----------hHhHH----------HHHHHHHHHHHHHHHHHHHHHhcccCccccchhhh-hHHHHHHHHH
Q 024062 83 K-------G----------RKWRK----------NVKSVEKELLQLEEDVKLLEEMYPQGEKAETSWAL-TVLGYLAKLV 134 (273)
Q Consensus 83 ~-------~----------~k~rr----------~~~~l~~~~~~Le~~~~~le~~y~~~~~~~~~~~~-~~l~~~~kLl 134 (273)
. + +|+.+ .++.+++++++++.+-..+++. +... .| .-+.+|...+
T Consensus 276 l~n~~~l~~~~~~~~~pl~~~~~~~l~~~k~~~~d~~~l~~~~~e~~~qr~~l~~r--rt~S-----a~eRnlvyP~am~ 348 (538)
T KOG3722|consen 276 LGNSTPLKNKKKRRTTPIVRKWDKDVPKKKNPNFDYRELKEYVKELRTQRSSLEKR--RTAS-----AWERNLVYPLAML 348 (538)
T ss_pred cccccccccccccCCChhHHHHhhhhhhhhcccccHHHHHHHHHHHHHHHHHHHhh--hhhH-----HHHHhhhhHHHHH
Confidence 0 1 11111 3445556666665555555553 1111 12 4667888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCchHH---HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhheeee
Q 024062 135 LGILGFIVSVAWVAHIVIYLLINPPLHPFLNE---VFIKLDDLWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIH 211 (273)
Q Consensus 135 ~Gii~lllSi~w~i~iil~~i~k~~~~~fLN~---~fi~l~~~fpll~~i~~~~~~~Yll~cs~~G~~~~GiR~~~~~i~ 211 (273)
+=.++.-+|++.++.-++..+.+...-|---+ +=+..=+-|.++|..+=.++++|++.+|++|--.. .+++=.
T Consensus 349 lLLv~T~~SvLlVa~NtL~LLi~e~AlP~~trg~~ig~~Sls~fG~fGA~lEv~LIfYlmvtSvVGfYSl----pffr~~ 424 (538)
T KOG3722|consen 349 LLLVLTTCSVLLVATNTLELLIGERALPVYTQGFAIGVHSLSKFGLFGACIEVLLIFYLMVTSVVGFYSL----PFFRSL 424 (538)
T ss_pred HHHHHhhhHHHHHHHhHHHHHhCcccCccccccccccceehhhccchHHHHHHHHHHHHHHHHHhhhhcc----hhhhcc
Confidence 88999999999999999888877432222211 11222245777999999999999999999997654 356444
Q ss_pred ecccCCChhhhHHHHHHHHHHHHHHH
Q 024062 212 PMKWGATLMNSFLFNVGLILLCSISV 237 (273)
Q Consensus 212 pmr~~~T~~nslLfn~~Llll~s~av 237 (273)
.=|+++|.|--..-||+.++..|.|+
T Consensus 425 ~Pkr~dTtM~qIIgNcv~iLVlSSAL 450 (538)
T KOG3722|consen 425 RPKRDDTTMPQIIGNCVSILVLSSAL 450 (538)
T ss_pred CcCccCCccchHhhhceeeeeecccc
Confidence 55777888888999999988877554
No 4
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=95.13 E-value=0.3 Score=42.32 Aligned_cols=20 Identities=35% Similarity=0.705 Sum_probs=13.3
Q ss_pred hhhhhhhHHHHhhcccCCCc
Q 024062 27 VGIACLPLGLIFSFIRRPKA 46 (273)
Q Consensus 27 vGlaalPi~LI~~f~~Rpk~ 46 (273)
+|++.++.++..=...+|.+
T Consensus 48 lg~vL~~~g~~~~~~~~~~~ 67 (191)
T PF04156_consen 48 LGVVLLSLGLLCLLSKRPVQ 67 (191)
T ss_pred HHHHHHHHHHHHHHHccccc
Confidence 45666777776666676655
No 5
>COG1422 Predicted membrane protein [Function unknown]
Probab=93.89 E-value=4.6 Score=36.25 Aligned_cols=27 Identities=19% Similarity=0.296 Sum_probs=22.7
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 024062 85 RKWRKNVKSVEKELLQLEEDVKLLEEM 111 (273)
Q Consensus 85 ~k~rr~~~~l~~~~~~Le~~~~~le~~ 111 (273)
++|-.++++++++..+.-+|++++-..
T Consensus 94 ~~d~~~lkkLq~~qmem~~~Q~elmk~ 120 (201)
T COG1422 94 SGDMKKLKKLQEKQMEMMDDQRELMKM 120 (201)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456779999999999999999888775
No 6
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=92.78 E-value=0.33 Score=41.73 Aligned_cols=74 Identities=12% Similarity=0.150 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-CchHHHH
Q 024062 90 NVKSVEKELLQLEEDVKLLEEMYPQGEKAETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLH-PFLNEVF 168 (273)
Q Consensus 90 ~~~~l~~~~~~Le~~~~~le~~y~~~~~~~~~~~~~~l~~~~kLl~Gii~lllSi~w~i~iil~~i~k~~~~-~fLN~~f 168 (273)
+.-+++|+...+++|.+.++++.......- -..+.....++.+....++ ..|.=.--++.+++. .+ .|+++++
T Consensus 67 kwaKl~Rk~~kl~~el~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l-~~~~rk~pV~~lp~~-~~p~p~~~lL 140 (161)
T PF04420_consen 67 KWAKLNRKLDKLEEELEKLNKSLSSEKSSF----DKSLSKVLWVLTTLPFFVL-RFWYRKTPVFYLPKG-WFPWPFEWLL 140 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCHHH----HHHHHHH---------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhh-heeecCceEEEECch-hhHHHHHHhe
Confidence 444556666666666666666533333210 0233333333333333333 334344445555542 33 5666665
Q ss_pred H
Q 024062 169 I 169 (273)
Q Consensus 169 i 169 (273)
-
T Consensus 141 S 141 (161)
T PF04420_consen 141 S 141 (161)
T ss_dssp -
T ss_pred e
Confidence 4
No 7
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=88.54 E-value=14 Score=31.21 Aligned_cols=18 Identities=17% Similarity=0.336 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 024062 8 YVVALATIVGSVLFSIFG 25 (273)
Q Consensus 8 f~i~~l~~iG~~lfv~y~ 25 (273)
.+..+..+++.+.+.++.
T Consensus 122 ~~~~~~~~i~~~~~~~~~ 139 (275)
T PF00664_consen 122 IISSIISIIFSLILLFFI 139 (275)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhhhhhccccc
Confidence 334444445544444443
No 8
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=88.24 E-value=5.8 Score=34.55 Aligned_cols=19 Identities=16% Similarity=0.308 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024062 6 PEYVVALATIVGSVLFSIF 24 (273)
Q Consensus 6 ~~f~i~~l~~iG~~lfv~y 24 (273)
+.|+.|+..++++++.-++
T Consensus 103 N~YIsGf~LfL~l~I~r~~ 121 (192)
T PF05529_consen 103 NMYISGFALFLSLVIRRVH 121 (192)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3688888888888877665
No 9
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.40 E-value=27 Score=33.22 Aligned_cols=20 Identities=10% Similarity=0.250 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 024062 92 KSVEKELLQLEEDVKLLEEM 111 (273)
Q Consensus 92 ~~l~~~~~~Le~~~~~le~~ 111 (273)
++|+|++.+|+||+|.++..
T Consensus 74 eEL~Rke~ELdRREr~~a~~ 93 (313)
T KOG3088|consen 74 EELRRKEQELDRRERALARA 93 (313)
T ss_pred HHHHHHHHHHhHHHHHHhhc
Confidence 34555667777777777774
No 10
>PF12537 DUF3735: Protein of unknown function (DUF3735); InterPro: IPR022535 This conserved domain is found in a subunit of a voltage dependent anion channel required for acidification and functions of the Golgi apparatus; it may function in counter-ion conductance. It belongs to the Golgi pH regulator (1.A.38 from TC) family
Probab=86.32 E-value=5 Score=29.94 Aligned_cols=58 Identities=22% Similarity=0.356 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhHHHHhhcccCCCcccC-hHHHHHHHHHHHHHHHHHHHH
Q 024062 9 VVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVIT-RSQYIKEATELGKKARELKKA 70 (273)
Q Consensus 9 ~i~~l~~iG~~lfv~y~gvGlaalPi~LI~~f~~Rpk~~is-~~~~~~~~~~i~~~~~~l~e~ 70 (273)
++.=++.+|..+..+-.|+|=+..|..-+.-|.+ | .+ ..+.....+.+..-.+.+.++
T Consensus 9 ~l~ri~ViGVt~mAiLSG~gaVstpy~~~~~~~~-~---v~~~~~i~~~~~~l~~t~~~l~~K 67 (72)
T PF12537_consen 9 VLSRIGVIGVTLMAILSGFGAVSTPYYYFSYFRR-P---VSRESDINNAERRLWHTRDMLVEK 67 (72)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHccHHHHHHHHHh-c---CChHHHHHHHHHHHHHHHHHHHHH
Confidence 5667889999999999999999999999996655 3 44 444444333343333333333
No 11
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=85.64 E-value=14 Score=28.12 Aligned_cols=25 Identities=12% Similarity=0.154 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 024062 52 QYIKEATELGKKARELKKAADTLHQ 76 (273)
Q Consensus 52 ~~~~~~~~i~~~~~~l~e~~~~l~~ 76 (273)
|..+.+....+-.++++|+|+.|+.
T Consensus 11 ~v~~v~~im~~Ni~~ll~Rge~L~~ 35 (89)
T PF00957_consen 11 QVEEVKNIMRENIDKLLERGEKLEE 35 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCchHHH
Confidence 4455566666666666666666664
No 12
>PF01277 Oleosin: Oleosin; InterPro: IPR000136 Oleosins [] are the proteinaceous components of plants' lipid storage bodies called oil bodies. Oil bodies are small droplets (0.2 to 1.5 mu-m in diameter) containing mostly triacylglycerol that are surrounded by a phospholipid/ oleosin annulus. Oleosins may have a structural role in stabilising the lipid body during dessication of the seed, by preventing coalescence of the oil. They may also provide recognition signals for specific lipase anchorage in lipolysis during seedling growth. Oleosins are found in the monolayer lipid/ water interface of oil bodies and probably interact with both the lipid and phospholipid moieties. Oleosins are proteins of 16 Kd to 24 Kd and are composed of three domains: an N-terminal hydrophilic region of variable length (from 30 to 60 residues); a central hydrophobic domain of about 70 residues and a C-terminal amphipathic region of variable length (from 60 to 100 residues). The central hydrophobic domain is proposed to be made up of beta-strand structure and to interact with the lipids []. It is the only domain whose sequence is conserved.; GO: 0012511 monolayer-surrounded lipid storage body, 0016021 integral to membrane
Probab=83.62 E-value=9.3 Score=31.59 Aligned_cols=59 Identities=15% Similarity=0.230 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhhhhhhhhh-HHHHhhcccCCCcccChHHHHHHHHHHHHHHHHHHHHHHHH
Q 024062 15 IVGSVLFSIFGGVGIACLP-LGLIFSFIRRPKAVITRSQYIKEATELGKKARELKKAADTL 74 (273)
Q Consensus 15 ~iG~~lfv~y~gvGlaalP-i~LI~~f~~Rpk~~is~~~~~~~~~~i~~~~~~l~e~~~~l 74 (273)
.+-.--|..-|+.|++++- +.++..+.++.+| -..+|..+.|.++.+.++++.|+.|+.
T Consensus 55 ~l~~~Gfl~sg~~g~~~ls~lsW~~~y~rg~~~-~~~~q~d~Ak~ri~d~a~~v~~kake~ 114 (118)
T PF01277_consen 55 GLAVAGFLTSGAFGLTALSSLSWMYNYFRGRHP-PGPDQLDYAKRRIADTASYVGQKAKEV 114 (118)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCC-CCCccHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333345556666666554 4777788877777 778888888889998888888887765
No 13
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=83.31 E-value=4.3 Score=33.87 Aligned_cols=58 Identities=19% Similarity=0.224 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCC-cChHhHHHHHHHHHHHHHHHHHHHHHHH
Q 024062 53 YIKEATELGKKARELKKAADTLHQEERSGS-KGRKWRKNVKSVEKELLQLEEDVKLLEE 110 (273)
Q Consensus 53 ~~~~~~~i~~~~~~l~e~~~~l~~~~~~~~-~~~k~rr~~~~l~~~~~~Le~~~~~le~ 110 (273)
+..+-..++.+.++..|.+++++++-.+-+ .-..-+.+++.+++.|+.||.+...+|+
T Consensus 66 LsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie~ 124 (126)
T PF07889_consen 66 LSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIEE 124 (126)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444455556666666666665443222 1234556888888888888888877775
No 14
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=82.50 E-value=10 Score=34.48 Aligned_cols=102 Identities=13% Similarity=0.105 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHHH------HhhcccCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 024062 7 EYVVALATIVGSVLFSIFGGVGIACLPLGL------IFSFIRRPKAVITRSQYIKEATELGKKARELKKAADTLHQEERS 80 (273)
Q Consensus 7 ~f~i~~l~~iG~~lfv~y~gvGlaalPi~L------I~~f~~Rpk~~is~~~~~~~~~~i~~~~~~l~e~~~~l~~~~~~ 80 (273)
.|+-|+..|++.++=-+++-+.-.+-=-+. ..+ -+++. -+.+.+.++.+...++.+.+.++-+.-+++-+.
T Consensus 100 ~YisGf~LFL~lvI~R~~~ll~~l~~l~~~~~~~~~~~~--lk~~~-~~~~~~~~~~~~~~~~~~kL~~el~~~~~~Le~ 176 (216)
T KOG1962|consen 100 LYISGFVLFLSLVIRRLHTLLRELATLRANEKAMKENEA--LKKQL-ENSSKLEEENDKLKADLEKLETELEKKQKKLEK 176 (216)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH--HHHhh-hcccchhhhHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 378888888888888887777765554442 111 11222 333335555555555555665555555443321
Q ss_pred CC-cChHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 024062 81 GS-KGRKWRKNVKSVEKELLQLEEDVKLLEEM 111 (273)
Q Consensus 81 ~~-~~~k~rr~~~~l~~~~~~Le~~~~~le~~ 111 (273)
.. ...--+++.+.+++|-..|-+|+.++++.
T Consensus 177 ~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~ 208 (216)
T KOG1962|consen 177 AQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQ 208 (216)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 11 11123345556666666666666666665
No 15
>PRK10884 SH3 domain-containing protein; Provisional
Probab=82.23 E-value=13 Score=33.50 Aligned_cols=20 Identities=10% Similarity=0.263 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024062 90 NVKSVEKELLQLEEDVKLLE 109 (273)
Q Consensus 90 ~~~~l~~~~~~Le~~~~~le 109 (273)
+.++++++...+..+.+.++
T Consensus 140 ~n~~L~~~l~~~~~~~~~l~ 159 (206)
T PRK10884 140 ENQKLKNQLIVAQKKVDAAN 159 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444433
No 16
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=81.67 E-value=13 Score=34.06 Aligned_cols=24 Identities=13% Similarity=0.231 Sum_probs=12.8
Q ss_pred CchHHHHHHhhhhhhHHHHHHHHH
Q 024062 162 PFLNEVFIKLDDLWGLLGTAAFAF 185 (273)
Q Consensus 162 ~fLN~~fi~l~~~fpll~~i~~~~ 185 (273)
.++|...-...+.+..+=|+.|++
T Consensus 185 ~~ia~~ik~se~~~~~lwyi~Y~v 208 (230)
T PF03904_consen 185 KAIASKIKASESFWTYLWYIAYLV 208 (230)
T ss_pred HHHHHHHhhhHhHHHHHHHHHHhh
Confidence 444555444555666555555554
No 17
>PRK10884 SH3 domain-containing protein; Provisional
Probab=81.22 E-value=12 Score=33.66 Aligned_cols=26 Identities=8% Similarity=0.090 Sum_probs=15.4
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHH
Q 024062 85 RKWRKNVKSVEKELLQLEEDVKLLEE 110 (273)
Q Consensus 85 ~k~rr~~~~l~~~~~~Le~~~~~le~ 110 (273)
++-++++..++.+.+.|+.+.+.++.
T Consensus 142 ~~L~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 142 QKLKNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666555554
No 18
>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function. Members are predicted to be integral membrane proteins.; GO: 0016020 membrane
Probab=80.76 E-value=34 Score=29.05 Aligned_cols=36 Identities=25% Similarity=0.290 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHhhhccCCcChHhHHHHHHHHHHHHHHHHHHHHH
Q 024062 65 RELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLL 108 (273)
Q Consensus 65 ~~l~e~~~~l~~~~~~~~~~~k~rr~~~~l~~~~~~Le~~~~~l 108 (273)
++..++.+++++++ +..+.++++++...+.+++...
T Consensus 50 ~~~~~~~~~l~~~~--------~~~~~~~l~~~~~~~~~~~~~~ 85 (168)
T PF01956_consen 50 KEFQKRYRELRKNG--------DFKKPKKLEKRQMELMEKQQEM 85 (168)
T ss_pred HHHHHHHHHHHHcC--------CccCHHHHHHHHHHHHHHHHHH
Confidence 34455555555422 2233444555555555554444
No 19
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.75 E-value=33 Score=28.30 Aligned_cols=21 Identities=14% Similarity=0.256 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 024062 91 VKSVEKELLQLEEDVKLLEEM 111 (273)
Q Consensus 91 ~~~l~~~~~~Le~~~~~le~~ 111 (273)
++.|+..-..|+.-...++..
T Consensus 59 L~~L~drad~L~~~as~F~~~ 79 (116)
T KOG0860|consen 59 LDELDDRADQLQAGASQFEKT 79 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444555544444443
No 20
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=79.46 E-value=29 Score=30.35 Aligned_cols=25 Identities=16% Similarity=0.207 Sum_probs=10.8
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024062 48 ITRSQYIKEATELGKKARELKKAADTLHQ 76 (273)
Q Consensus 48 is~~~~~~~~~~i~~~~~~l~e~~~~l~~ 76 (273)
+|..|+...+..++ +-.+.-+++++
T Consensus 65 ls~~e~~~~~~~l~----ea~~~i~~i~~ 89 (199)
T PF10112_consen 65 LSDREYEYIREILE----EAKEKIRRIEK 89 (199)
T ss_pred CChhHHHHHHHHHH----HHHHHHHHHHH
Confidence 34445443333333 44444444443
No 21
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=78.41 E-value=43 Score=28.80 Aligned_cols=28 Identities=21% Similarity=0.232 Sum_probs=17.0
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024062 85 RKWRKNVKSVEKELLQLEEDVKLLEEMY 112 (273)
Q Consensus 85 ~k~rr~~~~l~~~~~~Le~~~~~le~~y 112 (273)
.+++++.+++++|-.+||++-+..|+.+
T Consensus 76 ~~Y~~~~~~~~~e~~~l~~~A~~~e~~~ 103 (157)
T PF14235_consen 76 ARYKKEKARYKSEAEELEAKAKEAEAES 103 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3455666666666666666666555553
No 22
>PF04120 Iron_permease: Low affinity iron permease ; InterPro: IPR007251 Although originally identified as a low-affinity iron(II) permease [, ], Fet4 has since been shown to import several other transition metal ions, including copper [, ] and zinc []. Copper, cobalt, and cadmium inhibit Fet4 [, ]. Fet4 is an integral protein of the plasma membrane [, ]. FET4 is not essential, not even in fet3 fet4 double mutants []. Over expression of FET4 improves growth under alkaline conditions []. Transcription of FET4 is induced by Aft1 in response to low levels of iron [, , ] or by Zap1 in response to low zinc [, ], but not in response to low copper []. When the high-affinity iron permease component Fet3 is deleted, FET4 is induced by the addition of copper, zinc, cobalt, or manganese []. It is also induced under anaerobic conditions [, , ] and repressed by Rox1 in aerobic conditions [, ]. Rox1 attenuates the activation of FET4 by Aft1 or Zap1 []. ; GO: 0055085 transmembrane transport
Probab=76.94 E-value=44 Score=28.12 Aligned_cols=91 Identities=18% Similarity=0.133 Sum_probs=50.8
Q ss_pred cHHHHHHHHHHHHHHHHHH------------HHhhhhhhhhhHHH-HhhcccCCCcccChHHHHHHHHHHHHHHHHHHHH
Q 024062 4 TFPEYVVALATIVGSVLFS------------IFGGVGIACLPLGL-IFSFIRRPKAVITRSQYIKEATELGKKARELKKA 70 (273)
Q Consensus 4 sf~~f~i~~l~~iG~~lfv------------~y~gvGlaalPi~L-I~~f~~Rpk~~is~~~~~~~~~~i~~~~~~l~e~ 70 (273)
|+..|+++++..+||+..- +.++.+++.+=+-+ |+.--+ . +.+.+..|.+++++.
T Consensus 14 s~~~f~~~~~~Ii~W~i~Gp~~~~sdtWQLviNt~ttIitFlmvfLIQn~q~-----------R-d~~al~~KLdeLi~~ 81 (132)
T PF04120_consen 14 SPWAFVIAVAVIIVWAISGPVFGFSDTWQLVINTATTIITFLMVFLIQNTQN-----------R-DTKALQAKLDELIRA 81 (132)
T ss_pred CHHHHHHHHHHHHHHHHHhccccCcchHHHHHccHHHHHHHHHHHHHHhhhh-----------h-HHHHHHHHHHHHHHH
Confidence 6788999999999998874 34555555444333 333222 2 233555555666655
Q ss_pred HHHHHhhhccCCcChHhHHHHHHHHHHHHHHHHHHHHH
Q 024062 71 ADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLL 108 (273)
Q Consensus 71 ~~~l~~~~~~~~~~~k~rr~~~~l~~~~~~Le~~~~~l 108 (273)
.+.-+++- -.....+-+|+++++++.+.+.++.+.-
T Consensus 82 ~~~a~n~l--i~iE~l~~~el~~~~~~~~~~~~~~~~~ 117 (132)
T PF04120_consen 82 VKEARNEL--IDIEDLTEEELEEIRKRYERLAEQARER 117 (132)
T ss_pred HHHHHHHh--CCcccCCHHHHHHHHHHHHHHHHHhhhh
Confidence 55333221 1122334457777766666665554443
No 23
>KOG2417 consensus Predicted G-protein coupled receptor [Signal transduction mechanisms]
Probab=76.88 E-value=16 Score=35.83 Aligned_cols=94 Identities=19% Similarity=0.368 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHHhhcccCCCcccChHHHHHHHHHHHHHHHHHHHH----------HHHHHhhhc
Q 024062 10 VALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATELGKKARELKKA----------ADTLHQEER 79 (273)
Q Consensus 10 i~~l~~iG~~lfv~y~gvGlaalPi~LI~~f~~Rpk~~is~~~~~~~~~~i~~~~~~l~e~----------~~~l~~~~~ 79 (273)
|.=...+|.-+.++-.|-|-+-.|.+.+.-|.+ | ++..+..+...++..-.|-.+.+ .+++++++.
T Consensus 149 iSRvgVIGVTlMAvLSGFGAVN~PYsyms~FiR-~---Vee~di~~lErrL~qtmdmiisKKkk~a~~~l~~~~l~~e~~ 224 (462)
T KOG2417|consen 149 ISRVGVIGVTLMAVLSGFGAVNAPYSYMSYFIR-P---VEETDIIQLERRLAQTMDMIISKKKKMAMAQLEEKRLQSEKV 224 (462)
T ss_pred HhhhhhhhhhHHHHHhccCccCCchhhhhhhhc-c---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhc
Confidence 444567899999999999999999999988876 4 65555433222222221111111 122222221
Q ss_pred cCCcC---------------hHhHHHHHHHHHHHHHHHHHHHH
Q 024062 80 SGSKG---------------RKWRKNVKSVEKELLQLEEDVKL 107 (273)
Q Consensus 80 ~~~~~---------------~k~rr~~~~l~~~~~~Le~~~~~ 107 (273)
+.+.| ..-..+++++++|+..||+=.|.
T Consensus 225 ~k~pSff~r~w~~~~~~~~~~~~~~~i~~lq~EV~~LEeLsrq 267 (462)
T KOG2417|consen 225 QKEPSFFRRFWGMFSSSVQDNTLSSDIKLLQQEVEPLEELSRQ 267 (462)
T ss_pred ccCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHH
Confidence 11111 11123788999999999986655
No 24
>PF11026 DUF2721: Protein of unknown function (DUF2721); InterPro: IPR021279 This family is conserved in bacteria. The function is not known.
Probab=76.77 E-value=41 Score=27.74 Aligned_cols=48 Identities=19% Similarity=0.338 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCcChHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 024062 59 ELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEM 111 (273)
Q Consensus 59 ~i~~~~~~l~e~~~~l~~~~~~~~~~~k~rr~~~~l~~~~~~Le~~~~~le~~ 111 (273)
....|-....|+.|+++++.++... .+ + ++.++|.+.|++|-+.+..+
T Consensus 18 ~~tnRl~ri~dR~R~L~~~~~~~~~-~~-~---~~~~~el~~L~rR~~li~~a 65 (130)
T PF11026_consen 18 VLTNRLARIVDRIRQLHDELRDAPD-EE-E---RRLRRELRILRRRARLIRRA 65 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCc-ch-h---hhHHHHHHHHHHHHHHHHHH
Confidence 3444555667777777766543221 11 1 12278888899888888876
No 25
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=76.68 E-value=13 Score=28.34 Aligned_cols=45 Identities=29% Similarity=0.376 Sum_probs=30.8
Q ss_pred hhhHHHHhhcccCCCcc--cChHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024062 31 CLPLGLIFSFIRRPKAV--ITRSQYIKEATELGKKARELKKAADTLHQ 76 (273)
Q Consensus 31 alPi~LI~~f~~Rpk~~--is~~~~~~~~~~i~~~~~~l~e~~~~l~~ 76 (273)
..|+-|+.-|.++.+.. .|.++ .+..+++.++++++.|+-+.||+
T Consensus 17 Vap~wl~lHY~~k~~~~~~ls~~d-~~~L~~L~~~a~rm~eRI~tLE~ 63 (75)
T TIGR02976 17 VAPLWLILHYRSKRKTAASLSTDD-QALLQELYAKADRLEERIDTLER 63 (75)
T ss_pred HHHHHHHHHHHhhhccCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45999999999876531 22222 33556677788888888888876
No 26
>PF07586 HXXSHH: Protein of unknown function (DUF1552); InterPro: IPR011447 This is a family of proteins identified in Rhodopirellula baltica.
Probab=76.63 E-value=6.6 Score=36.70 Aligned_cols=41 Identities=15% Similarity=0.240 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhhhccCCcChHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 024062 66 ELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEM 111 (273)
Q Consensus 66 ~l~e~~~~l~~~~~~~~~~~k~rr~~~~l~~~~~~Le~~~~~le~~ 111 (273)
.++|..+.|+ .+.++.||.+++..-..+|++|++.+..+..
T Consensus 166 ~v~~d~~~L~-----~~Lg~~Dr~kLd~yl~sireiE~rl~~~~~~ 206 (302)
T PF07586_consen 166 LVREDAKSLR-----RRLGAEDRQKLDQYLDSIREIEKRLQQAEAW 206 (302)
T ss_pred HHHHHHHHHH-----hhcCHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 4445555553 4568899999999999999999999877765
No 27
>PRK13743 conjugal transfer protein TrbF; Provisional
Probab=75.70 E-value=25 Score=29.66 Aligned_cols=64 Identities=16% Similarity=0.071 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCCCchHHH---HHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 024062 129 YLAKLVLGILGFIVSVAWVAHIVIY-LLINPPLHPFLNEV---FIKLDDLWGLLGTAAFAFFCFYLLLAVI 195 (273)
Q Consensus 129 ~~~kLl~Gii~lllSi~w~i~iil~-~i~k~~~~~fLN~~---fi~l~~~fpll~~i~~~~~~~Yll~cs~ 195 (273)
+|+.|++=++..-+-+.|+-|.+.. ++|.--..|=||.+ -+-+=.+-| |.++|+-+-+|...+.
T Consensus 39 ~Y~~LfiVFl~AG~vLw~vM~~iFd~CIDsWkAdpeLnn~rymWNilMYaIP---y~L~Ala~GFlv~~~~ 106 (141)
T PRK13743 39 IYFDLFIVFLTAGIVLWVIMHSIFDACIDSWKADPELNNFRYMWNILMYVIP---YTLWALAAGFLVAGVR 106 (141)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcChhhhhHHHHHHHHHHHHH---HHHHHHHhchhhhhhh
Confidence 4677766666666667788888876 67765566666553 333445666 5677766666654443
No 28
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=74.13 E-value=22 Score=29.05 Aligned_cols=56 Identities=18% Similarity=0.285 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCcChHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 024062 54 IKEATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEM 111 (273)
Q Consensus 54 ~~~~~~i~~~~~~l~e~~~~l~~~~~~~~~~~k~rr~~~~l~~~~~~Le~~~~~le~~ 111 (273)
.++...++++.++++|--++= |.++...-.+.-|+++.+..++..||...+.+++.
T Consensus 7 ~~q~~~l~~~v~~lRed~r~S--Edrsa~SRa~mhrRlDElV~Rv~~lEs~~~~lk~d 62 (112)
T PF07439_consen 7 HQQLGTLNAEVKELREDIRRS--EDRSAASRASMHRRLDELVERVTTLESSVSTLKAD 62 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHhh
Confidence 344555666666666665532 22222222355678999999999999998888876
No 29
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=70.76 E-value=26 Score=31.27 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Q 024062 87 WRKNVKSVEKELLQLEEDVKLLEEM 111 (273)
Q Consensus 87 ~rr~~~~l~~~~~~Le~~~~~le~~ 111 (273)
-|+++..+.++.+.||.+++.+...
T Consensus 106 mr~eV~~Y~~KL~eLE~kq~~L~rE 130 (195)
T PF10226_consen 106 MRQEVAQYQQKLKELEDKQEELIRE 130 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3458888999999999988877665
No 30
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=70.66 E-value=53 Score=26.24 Aligned_cols=42 Identities=10% Similarity=0.257 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc-cCCcChHhHHHHHHHHHH
Q 024062 56 EATELGKKARELKKAADTLHQEER-SGSKGRKWRKNVKSVEKE 97 (273)
Q Consensus 56 ~~~~i~~~~~~l~e~~~~l~~~~~-~~~~~~k~rr~~~~l~~~ 97 (273)
+-+++++.-+...+.-.+|+.+.+ +...+.|.-+.++.+++|
T Consensus 12 Ri~rLEendk~i~~~L~~Ik~gq~~qe~v~~kld~tlD~i~re 54 (98)
T PF11166_consen 12 RIRRLEENDKTIFNKLDEIKDGQHDQELVNQKLDRTLDEINRE 54 (98)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhHhhHHHHHHHHHhhHHHHHHH
Confidence 444455444444555555554322 122334445566666665
No 31
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=68.53 E-value=45 Score=24.59 Aligned_cols=34 Identities=15% Similarity=0.371 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHhcccCccccchhhhhHHHHHHHHHHHHHHHHHHHH
Q 024062 98 LLQLEEDVKLLEEMYPQGEKAETSWALTVLGYLAKLVLGILGFIVSVA 145 (273)
Q Consensus 98 ~~~Le~~~~~le~~y~~~~~~~~~~~~~~l~~~~kLl~Gii~lllSi~ 145 (273)
...+.++-+.++.. ..|.| .-+++|++..+++.+
T Consensus 36 i~~~~~~l~~I~~n--------~kW~~------r~iiGaiI~~i~~~i 69 (71)
T PF10779_consen 36 IKNLNKQLEKIKSN--------TKWIW------RTIIGAIITAIIYLI 69 (71)
T ss_pred HHHHHHHHHHHHHH--------HHHHH------HHHHHHHHHHHHHHH
Confidence 44555555555554 35655 234455555555443
No 32
>PRK09609 hypothetical protein; Provisional
Probab=67.85 E-value=1.2e+02 Score=29.19 Aligned_cols=21 Identities=24% Similarity=0.518 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 024062 91 VKSVEKELLQLEEDVKLLEEM 111 (273)
Q Consensus 91 ~~~l~~~~~~Le~~~~~le~~ 111 (273)
.++++++...+|++-+.+|..
T Consensus 140 ~~~~~~ki~~~~~k~~~~~~~ 160 (312)
T PRK09609 140 IQKIKQKIILLEKKKKKLEKT 160 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 777888888888888888886
No 33
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=67.74 E-value=28 Score=30.49 Aligned_cols=60 Identities=18% Similarity=0.289 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh----hccCC--cChHhHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 024062 56 EATELGKKARELKKAADTLHQE----ERSGS--KGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQG 115 (273)
Q Consensus 56 ~~~~i~~~~~~l~e~~~~l~~~----~~~~~--~~~k~rr~~~~l~~~~~~Le~~~~~le~~y~~~ 115 (273)
....+.++.+.+.++.++|++. .+..- .=-++|||++.+...+..||.+..++|..+...
T Consensus 86 R~~lLe~~~~~l~~ri~eLe~~l~~kad~vvsYqll~hr~e~ee~~~~l~~le~~~~~~e~~~~~~ 151 (175)
T PRK13182 86 DFEQLEAQLNTITRRLDELERQLQQKADDVVSYQLLQHRREMEEMLERLQKLEARLKKLEPIYITP 151 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 3444444444555555555432 21111 125799999999999999999999988876555
No 34
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=67.35 E-value=5.4 Score=35.49 Aligned_cols=36 Identities=25% Similarity=0.264 Sum_probs=1.3
Q ss_pred ccHHHHHHH-HHHHHHHHHHHHHhhhhhhhhhHHHHhhc
Q 024062 3 TTFPEYVVA-LATIVGSVLFSIFGGVGIACLPLGLIFSF 40 (273)
Q Consensus 3 vsf~~f~i~-~l~~iG~~lfv~y~gvGlaalPi~LI~~f 40 (273)
+++....++ ++.--||.+. ++.+++..+=--+...+
T Consensus 22 ~~~l~~tv~~~L~~yGWyil--~~~I~ly~l~qkl~~~~ 58 (190)
T PF06936_consen 22 LSFLQSTVGSFLSSYGWYIL--FGCILLYLLWQKLSPSF 58 (190)
T ss_dssp ------------------------------------HHH
T ss_pred HHHHHHHHHHHHHHhCHHHH--HHHHHHHHHHHHHHHHH
Confidence 345555566 8899999654 77777765444444443
No 35
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=66.21 E-value=16 Score=27.81 Aligned_cols=44 Identities=20% Similarity=0.338 Sum_probs=25.3
Q ss_pred hhHHHHhhcccCCCc--ccChHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024062 32 LPLGLIFSFIRRPKA--VITRSQYIKEATELGKKARELKKAADTLHQ 76 (273)
Q Consensus 32 lPi~LI~~f~~Rpk~--~is~~~~~~~~~~i~~~~~~l~e~~~~l~~ 76 (273)
.|+-|+.-|++|.|. -.|.++ .+.-+++.++++++.|+-+.||+
T Consensus 18 ap~WL~lHY~sk~~~~~gLs~~d-~~~L~~L~~~a~rm~eRI~tLE~ 63 (75)
T PF06667_consen 18 APIWLILHYRSKWKSSQGLSEED-EQRLQELYEQAERMEERIETLER 63 (75)
T ss_pred HHHHHHHHHHHhcccCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 488899988876532 122222 22344555666666666666665
No 36
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=65.93 E-value=39 Score=29.05 Aligned_cols=33 Identities=6% Similarity=0.087 Sum_probs=26.4
Q ss_pred ChHhHHHHHHHHHHHHHHHHHHHHHHHhcccCc
Q 024062 84 GRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGE 116 (273)
Q Consensus 84 ~~k~rr~~~~l~~~~~~Le~~~~~le~~y~~~~ 116 (273)
..+.|+|-++++++....|++.++++..+++=+
T Consensus 82 ~~~~~~e~~~l~~~A~~~e~~~d~~~~~~~~f~ 114 (157)
T PF14235_consen 82 KARYKSEAEELEAKAKEAEAESDHALHHHHRFD 114 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhcccchhH
Confidence 456778888999999999999998888755544
No 37
>PF09712 PHA_synth_III_E: Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E)
Probab=65.49 E-value=19 Score=33.99 Aligned_cols=27 Identities=26% Similarity=0.321 Sum_probs=22.5
Q ss_pred cChHhHHHHHHHHHHHHHHHHHHHHHH
Q 024062 83 KGRKWRKNVKSVEKELLQLEEDVKLLE 109 (273)
Q Consensus 83 ~~~k~rr~~~~l~~~~~~Le~~~~~le 109 (273)
.+-=.|++++.+.+++++|+|+.+.++
T Consensus 266 l~lPTr~evd~l~k~l~eLrre~r~Lk 292 (293)
T PF09712_consen 266 LNLPTRSEVDELYKRLHELRREVRALK 292 (293)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 344467899999999999999999875
No 38
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=64.49 E-value=27 Score=33.60 Aligned_cols=30 Identities=20% Similarity=0.260 Sum_probs=23.2
Q ss_pred cChHhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024062 83 KGRKWRKNVKSVEKELLQLEEDVKLLEEMY 112 (273)
Q Consensus 83 ~~~k~rr~~~~l~~~~~~Le~~~~~le~~y 112 (273)
++--.|++++.+.+.+++|||+.+.|+...
T Consensus 283 LnlPTRsElDe~~krL~ELrR~vr~L~k~l 312 (320)
T TIGR01834 283 LNLPTRSELDEAHQRIQQLRREVKSLKKRL 312 (320)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344467888888888888888888888763
No 39
>KOG3312 consensus Predicted membrane protein [Function unknown]
Probab=64.28 E-value=24 Score=30.58 Aligned_cols=18 Identities=22% Similarity=0.523 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 024062 51 SQYIKEATELGKKARELK 68 (273)
Q Consensus 51 ~~~~~~~~~i~~~~~~l~ 68 (273)
+.|+..|+++++++++|.
T Consensus 34 ~~Yk~LKa~vdK~sKKLE 51 (186)
T KOG3312|consen 34 DKYKRLKAEVDKQSKKLE 51 (186)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 447778888887766654
No 40
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=63.67 E-value=30 Score=31.96 Aligned_cols=27 Identities=19% Similarity=0.280 Sum_probs=17.2
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 024062 85 RKWRKNVKSVEKELLQLEEDVKLLEEM 111 (273)
Q Consensus 85 ~k~rr~~~~l~~~~~~Le~~~~~le~~ 111 (273)
-++.|+++.|..|+.+++++...++..
T Consensus 85 v~~~~e~~aL~~E~~~ak~r~~~le~e 111 (239)
T COG1579 85 VKDERELRALNIEIQIAKERINSLEDE 111 (239)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777666666555543
No 41
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=63.65 E-value=39 Score=35.88 Aligned_cols=26 Identities=19% Similarity=0.542 Sum_probs=17.0
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHH
Q 024062 85 RKWRKNVKSVEKELLQLEEDVKLLEE 110 (273)
Q Consensus 85 ~k~rr~~~~l~~~~~~Le~~~~~le~ 110 (273)
+++++|+++++.+++.|....+++..
T Consensus 635 r~~~~EL~~~~~~l~~l~~si~~lk~ 660 (717)
T PF10168_consen 635 REFKKELERMKDQLQDLKASIEQLKK 660 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777665555433
No 42
>PRK09458 pspB phage shock protein B; Provisional
Probab=62.38 E-value=55 Score=25.02 Aligned_cols=52 Identities=15% Similarity=0.360 Sum_probs=33.8
Q ss_pred HHHHHHHhhhhhhhhhHHHHhhcccCCCc--ccChHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024062 18 SVLFSIFGGVGIACLPLGLIFSFIRRPKA--VITRSQYIKEATELGKKARELKKAADTLHQ 76 (273)
Q Consensus 18 ~~lfv~y~gvGlaalPi~LI~~f~~Rpk~--~is~~~~~~~~~~i~~~~~~l~e~~~~l~~ 76 (273)
.++|++|. .|+=|+.-|+++-|. .+|.++. +.-.++.++|+++.|+.+.||+
T Consensus 10 liiF~ifV------aPiWL~LHY~sk~~~~~~Ls~~d~-~~L~~L~~~A~rm~~RI~tLE~ 63 (75)
T PRK09458 10 LTIFVLFV------APIWLWLHYRSKRQGSQGLSQEEQ-QRLAQLTEKAERMRERIQALEA 63 (75)
T ss_pred HHHHHHHH------HHHHHHHhhcccccCCCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 34555554 499999999985542 1343332 2455666888888888888876
No 43
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=61.65 E-value=1.8e+02 Score=29.26 Aligned_cols=13 Identities=23% Similarity=0.347 Sum_probs=6.6
Q ss_pred hhhhhhhHHHHhh
Q 024062 27 VGIACLPLGLIFS 39 (273)
Q Consensus 27 vGlaalPi~LI~~ 39 (273)
+.++.+|+-++-.
T Consensus 168 ~~l~~~~~~~~~~ 180 (588)
T PRK11174 168 ILLGTAPLIPLFM 180 (588)
T ss_pred HHHHHHHHHHHHH
Confidence 3455556655543
No 44
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=61.61 E-value=31 Score=33.35 Aligned_cols=14 Identities=36% Similarity=0.441 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHH
Q 024062 131 AKLVLGILGFIVSV 144 (273)
Q Consensus 131 ~kLl~Gii~lllSi 144 (273)
||+-..++++++++
T Consensus 126 FKl~~tii~l~~~~ 139 (330)
T PF07851_consen 126 FKLYLTIILLLFAV 139 (330)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777766666
No 45
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=61.46 E-value=38 Score=27.67 Aligned_cols=17 Identities=12% Similarity=0.347 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024062 59 ELGKKARELKKAADTLH 75 (273)
Q Consensus 59 ~i~~~~~~l~e~~~~l~ 75 (273)
+|+++-+++.|+...|+
T Consensus 71 ki~~~~~kV~ere~eL~ 87 (115)
T PF06476_consen 71 KIAEKQQKVAEREAELK 87 (115)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 46
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=60.94 E-value=21 Score=27.15 Aligned_cols=33 Identities=18% Similarity=0.173 Sum_probs=28.8
Q ss_pred CCcChHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 024062 81 GSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYP 113 (273)
Q Consensus 81 ~~~~~k~rr~~~~l~~~~~~Le~~~~~le~~y~ 113 (273)
.+.+..|.++++.+.+....||+|.+.||.-..
T Consensus 34 ~~ls~~d~~~L~~L~~~a~rm~eRI~tLE~ILd 66 (75)
T TIGR02976 34 ASLSTDDQALLQELYAKADRLEERIDTLERILD 66 (75)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 347888999999999999999999999998743
No 47
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=60.27 E-value=64 Score=24.79 Aligned_cols=31 Identities=26% Similarity=0.228 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcccCcc
Q 024062 87 WRKNVKSVEKELLQLEEDVKLLEEMYPQGEK 117 (273)
Q Consensus 87 ~rr~~~~l~~~~~~Le~~~~~le~~y~~~~~ 117 (273)
+..+.+++++++..+|++.|.-...+.|.-|
T Consensus 13 ~~~d~~~i~~rLD~iEeKVEftn~Ei~Qr~G 43 (77)
T PRK01026 13 DPKDFKEIQKRLDEIEEKVEFTNAEIFQRIG 43 (77)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4446666666666666665554444334444
No 48
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=59.88 E-value=1.1e+02 Score=30.39 Aligned_cols=23 Identities=30% Similarity=0.597 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 024062 5 FPEYVVALATIVGSVLFSIFGGV 27 (273)
Q Consensus 5 f~~f~i~~l~~iG~~lfv~y~gv 27 (273)
|++-.|-+++++|.++|.+||-+
T Consensus 30 lF~SLIQ~LIIlgLVLFmVYGn~ 52 (442)
T PF06637_consen 30 LFVSLIQFLIILGLVLFMVYGNV 52 (442)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCc
Confidence 34556888999999999999854
No 49
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=59.88 E-value=16 Score=31.34 Aligned_cols=22 Identities=18% Similarity=0.105 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 024062 90 NVKSVEKELLQLEEDVKLLEEM 111 (273)
Q Consensus 90 ~~~~l~~~~~~Le~~~~~le~~ 111 (273)
|+.+.-+-.|.+++-.+++|+.
T Consensus 64 eFAkwaKl~Rk~~kl~~el~~~ 85 (161)
T PF04420_consen 64 EFAKWAKLNRKLDKLEEELEKL 85 (161)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777666666666666665
No 50
>KOG4253 consensus Tryptophan-rich basic nuclear protein [General function prediction only]
Probab=59.54 E-value=76 Score=27.72 Aligned_cols=7 Identities=29% Similarity=0.515 Sum_probs=3.5
Q ss_pred cccCCCc
Q 024062 40 FIRRPKA 46 (273)
Q Consensus 40 f~~Rpk~ 46 (273)
|.+||..
T Consensus 34 ~~s~~~n 40 (175)
T KOG4253|consen 34 FMSRVGN 40 (175)
T ss_pred hhhcccc
Confidence 4555533
No 51
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=59.12 E-value=1.5e+02 Score=27.50 Aligned_cols=25 Identities=16% Similarity=0.330 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Q 024062 87 WRKNVKSVEKELLQLEEDVKLLEEM 111 (273)
Q Consensus 87 ~rr~~~~l~~~~~~Le~~~~~le~~ 111 (273)
...+.+.+++++..++++.+.....
T Consensus 140 ~~~~i~~l~~~~~~~~~~~~~~~~~ 164 (301)
T PF14362_consen 140 LDAEIAALQAEIDQLEKEIDRAQQE 164 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777888888888777665554
No 52
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=58.48 E-value=64 Score=24.55 Aligned_cols=33 Identities=15% Similarity=0.251 Sum_probs=29.3
Q ss_pred cCCcChHhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024062 80 SGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMY 112 (273)
Q Consensus 80 ~~~~~~k~rr~~~~l~~~~~~Le~~~~~le~~y 112 (273)
+++.+..|+++++.+-++-+.|++|.+.||.-.
T Consensus 33 ~~gLs~~d~~~L~~L~~~a~rm~eRI~tLE~IL 65 (75)
T PF06667_consen 33 SQGLSEEDEQRLQELYEQAERMEERIETLERIL 65 (75)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355788999999999999999999999999874
No 53
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=58.38 E-value=63 Score=27.69 Aligned_cols=65 Identities=11% Similarity=0.170 Sum_probs=36.5
Q ss_pred CcccChHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcC-----hHhHHHHHHHHHHHHHHHHHHHHHHH
Q 024062 45 KAVITRSQYIKEATELGKKARELKKAADTLHQEERSGSKG-----RKWRKNVKSVEKELLQLEEDVKLLEE 110 (273)
Q Consensus 45 k~~is~~~~~~~~~~i~~~~~~l~e~~~~l~~~~~~~~~~-----~k~rr~~~~l~~~~~~Le~~~~~le~ 110 (273)
.+ ||..-|++.+.+++..-.+--+..+.++.....|-.| .-.|++...+.+..+.|+++.+..+.
T Consensus 6 ~~-lT~eg~~~L~~EL~~L~~~r~~i~~~i~~Ar~~GDlsENaey~aak~~q~~~e~RI~~L~~~L~~A~i 75 (158)
T PRK05892 6 KG-LAPAARDHLEAELARLRARRDRLAVEVNDRGMIGDHGDQAEAIQRADELARLDDRINELDRRLRTGPT 75 (158)
T ss_pred Cc-cCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhCEE
Confidence 34 8888888877788744444344445555444434332 12334555566666666666555443
No 54
>PRK04654 sec-independent translocase; Provisional
Probab=58.23 E-value=64 Score=29.32 Aligned_cols=14 Identities=21% Similarity=0.449 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHh
Q 024062 12 LATIVGSVLFSIFG 25 (273)
Q Consensus 12 ~l~~iG~~lfv~y~ 25 (273)
=+.+|+.+..++||
T Consensus 8 ELLlI~VVALlV~G 21 (214)
T PRK04654 8 ELTLIAVVALVVLG 21 (214)
T ss_pred HHHHHHHHHHHhcC
Confidence 45666666666666
No 55
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=58.00 E-value=90 Score=24.92 Aligned_cols=13 Identities=8% Similarity=0.189 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHH
Q 024062 9 VVALATIVGSVLF 21 (273)
Q Consensus 9 ~i~~l~~iG~~lf 21 (273)
++.++++++++.|
T Consensus 5 ~~vll~ll~~l~y 17 (105)
T PRK00888 5 TLLLLALLVWLQY 17 (105)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444444
No 56
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=55.58 E-value=1.2e+02 Score=27.54 Aligned_cols=60 Identities=17% Similarity=0.145 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCC-cChHhHHHHH----HHHHHHHHHHHHHHHHHHhcccC
Q 024062 56 EATELGKKARELKKAADTLHQEERSGS-KGRKWRKNVK----SVEKELLQLEEDVKLLEEMYPQG 115 (273)
Q Consensus 56 ~~~~i~~~~~~l~e~~~~l~~~~~~~~-~~~k~rr~~~----~l~~~~~~Le~~~~~le~~y~~~ 115 (273)
.++.-++-++++.+..++|+.....-+ .=.+|.+-++ .+.+....|++...++++.+.++
T Consensus 161 ~~~~QE~L~~em~~La~~LK~~s~~~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~~ 225 (251)
T PF09753_consen 161 HRNLQEDLTEEMLSLARQLKENSLAFSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSKS 225 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444445667788888888876432111 1123443333 35555666777777777764333
No 57
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=55.46 E-value=88 Score=27.52 Aligned_cols=26 Identities=19% Similarity=0.348 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024062 87 WRKNVKSVEKELLQLEEDVKLLEEMY 112 (273)
Q Consensus 87 ~rr~~~~l~~~~~~Le~~~~~le~~y 112 (273)
-.++.+.++++.-.|+.+.+.+++.|
T Consensus 142 ~~~~~k~LrnKa~~L~~eL~~F~~~y 167 (171)
T PF04799_consen 142 IQSKSKTLRNKANWLESELERFQEQY 167 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33456666666666666666666654
No 58
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=54.74 E-value=66 Score=31.79 Aligned_cols=63 Identities=24% Similarity=0.381 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh-------hccCCcChHh-------HHHHHHHHHHHHHHHHHHHHHHHhcc
Q 024062 51 SQYIKEATELGKKARELKKAADTLHQE-------ERSGSKGRKW-------RKNVKSVEKELLQLEEDVKLLEEMYP 113 (273)
Q Consensus 51 ~~~~~~~~~i~~~~~~l~e~~~~l~~~-------~~~~~~~~k~-------rr~~~~l~~~~~~Le~~~~~le~~y~ 113 (273)
+++.++..++.++.+++.++.+++++. ........+. +++...++++...|+++...+++...
T Consensus 330 ~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~ 406 (451)
T PF03961_consen 330 PELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELE 406 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445455555555555555555442 1122222222 23445556666666666655555533
No 59
>PRK09458 pspB phage shock protein B; Provisional
Probab=54.22 E-value=30 Score=26.45 Aligned_cols=31 Identities=10% Similarity=0.245 Sum_probs=27.8
Q ss_pred CCcChHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 024062 81 GSKGRKWRKNVKSVEKELLQLEEDVKLLEEM 111 (273)
Q Consensus 81 ~~~~~k~rr~~~~l~~~~~~Le~~~~~le~~ 111 (273)
.+.+..|+++++.+-+..+.|++|.+.+|.-
T Consensus 34 ~~Ls~~d~~~L~~L~~~A~rm~~RI~tLE~I 64 (75)
T PRK09458 34 QGLSQEEQQRLAQLTEKAERMRERIQALEAI 64 (75)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478889999999999999999999999886
No 60
>PF04791 LMBR1: LMBR1-like membrane protein; InterPro: IPR006876 This group of uncharacterised proteins have a conserved C-terminal region which is found in LMBR1 and in the lipocalin-1 receptor. LMBR1 was thought to play a role in preaxial polydactyly, but recent evidence now suggests this not to be the case [].
Probab=53.44 E-value=17 Score=35.70 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024062 52 QYIKEATELGKKARELKKAADTLH 75 (273)
Q Consensus 52 ~~~~~~~~i~~~~~~l~e~~~~l~ 75 (273)
+..+++.+.+++.++..++-+.++
T Consensus 200 ~~~~~~~~~~~~l~~~~~~~~~~~ 223 (471)
T PF04791_consen 200 KLEDEAAEAKEKLDDIIEKLRRLR 223 (471)
T ss_pred hhcchhHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555554443
No 61
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=53.03 E-value=56 Score=32.29 Aligned_cols=58 Identities=26% Similarity=0.342 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcc----CCcChHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 024062 54 IKEATELGKKARELKKAADTLHQEERS----GSKGRKWRKNVKSVEKELLQLEEDVKLLEEM 111 (273)
Q Consensus 54 ~~~~~~i~~~~~~l~e~~~~l~~~~~~----~~~~~k~rr~~~~l~~~~~~Le~~~~~le~~ 111 (273)
.+++.++..+.++++.+.+++.++-.. +....+.+.+.+++++++..||++.+.+++.
T Consensus 34 d~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 95 (425)
T PRK05431 34 DEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAE 95 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335566666666777666665543221 1111123345566666666666666665554
No 62
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=52.61 E-value=2.5e+02 Score=28.03 Aligned_cols=23 Identities=13% Similarity=0.213 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhh
Q 024062 7 EYVVALATIVGSVLFSIFGGVGI 29 (273)
Q Consensus 7 ~f~i~~l~~iG~~lfv~y~gvGl 29 (273)
.++..+..+++.+++++|-+..+
T Consensus 134 ~~i~~~~~~~~~~~~l~~~~~~l 156 (571)
T TIGR02203 134 VLVRETLTVIGLFIVLLYYSWQL 156 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHH
Confidence 34444555555555555554444
No 63
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=52.34 E-value=58 Score=29.57 Aligned_cols=56 Identities=23% Similarity=0.305 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCC-cChHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 024062 56 EATELGKKARELKKAADTLHQEERSGS-KGRKWRKNVKSVEKELLQLEEDVKLLEEM 111 (273)
Q Consensus 56 ~~~~i~~~~~~l~e~~~~l~~~~~~~~-~~~k~rr~~~~l~~~~~~Le~~~~~le~~ 111 (273)
+..+++++.+++.+..++++++-+.-. .+++-.+.++..+++...|+++.+.++..
T Consensus 43 ~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~ 99 (251)
T PF11932_consen 43 RIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEET 99 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444322111 23344456666666677777766666665
No 64
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=51.60 E-value=97 Score=23.37 Aligned_cols=19 Identities=26% Similarity=0.480 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024062 89 KNVKSVEKELLQLEEDVKL 107 (273)
Q Consensus 89 r~~~~l~~~~~~Le~~~~~ 107 (273)
.+.+++++++...|++.|-
T Consensus 12 ~~~~~i~~rLd~iEeKvEf 30 (70)
T PF04210_consen 12 DDFNEIMKRLDEIEEKVEF 30 (70)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3455555555555555444
No 65
>PRK10573 type IV pilin biogenesis protein; Provisional
Probab=51.41 E-value=2.3e+02 Score=27.22 Aligned_cols=52 Identities=15% Similarity=0.186 Sum_probs=25.5
Q ss_pred hHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCC-CCCchHHHHHHhhhhhh
Q 024062 125 TVLGYLAKL-VLGILGFIVSVAWVAHIVIYLLINPP-LHPFLNEVFIKLDDLWG 176 (273)
Q Consensus 125 ~~l~~~~kL-l~Gii~lllSi~w~i~iil~~i~k~~-~~~fLN~~fi~l~~~fp 176 (273)
+.+.||.-+ +.+++.+++-+.+++=.+..+..... -.|+.-.++..+.++++
T Consensus 162 ~al~YP~~ll~~~~~v~~~~~~~vlP~f~~~~~~~~~~lP~~T~~l~~~s~~l~ 215 (399)
T PRK10573 162 KALRYPLIILAVALLVVLAMLHFVLPEFAAIYRSFNTPLPLLTRGILALSDFLI 215 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 566666544 44444444444444444444444322 24555566666555444
No 66
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=50.87 E-value=1.8e+02 Score=29.36 Aligned_cols=11 Identities=27% Similarity=0.455 Sum_probs=4.9
Q ss_pred hhhhhhHHHHh
Q 024062 28 GIACLPLGLIF 38 (273)
Q Consensus 28 GlaalPi~LI~ 38 (273)
.++.+|+-++-
T Consensus 171 ~l~~~~i~~~~ 181 (592)
T PRK10790 171 AIMIFPAVLVV 181 (592)
T ss_pred HHHHHHHHHHH
Confidence 34444554443
No 67
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=50.84 E-value=70 Score=31.28 Aligned_cols=54 Identities=24% Similarity=0.376 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCcChHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 024062 55 KEATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEM 111 (273)
Q Consensus 55 ~~~~~i~~~~~~l~e~~~~l~~~~~~~~~~~k~rr~~~~l~~~~~~Le~~~~~le~~ 111 (273)
+..+.++++.+++.++.++++.+-.+.. |.+++++.++++...++++.+.+++-
T Consensus 242 ~~~~~l~~~~~~~~~~i~~l~~~l~~~~---k~~~k~~~~~~q~~~~~k~~~~~~~~ 295 (406)
T PF02388_consen 242 EYLESLQEKLEKLEKEIEKLEEKLEKNP---KKKNKLKELEEQLASLEKRIEEAEEL 295 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-T---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCc---chhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555566666666665422222 77788888999999999988888775
No 68
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=50.66 E-value=1.2e+02 Score=27.69 Aligned_cols=12 Identities=42% Similarity=0.529 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHh
Q 024062 100 QLEEDVKLLEEM 111 (273)
Q Consensus 100 ~Le~~~~~le~~ 111 (273)
.++++.++|.+.
T Consensus 97 ~l~~en~~L~~l 108 (276)
T PRK13922 97 QLEAENARLREL 108 (276)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 69
>PF01616 Orbi_NS3: Orbivirus NS3; InterPro: IPR002565 This is a family of Orbivirus non structural protein of unknown function, but which may play a role in release of the virus from infected cells [].
Probab=50.48 E-value=1.9e+02 Score=25.97 Aligned_cols=89 Identities=16% Similarity=0.304 Sum_probs=52.6
Q ss_pred hhhhhhHHHHhhcccCCCcccChHH-HHHHHHHHHHHHHHHH--HHHHHHHhhhccCCcChHhHHHHHHHHHHHHHHHHH
Q 024062 28 GIACLPLGLIFSFIRRPKAVITRSQ-YIKEATELGKKARELK--KAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEED 104 (273)
Q Consensus 28 GlaalPi~LI~~f~~Rpk~~is~~~-~~~~~~~i~~~~~~l~--e~~~~l~~~~~~~~~~~k~rr~~~~l~~~~~~Le~~ 104 (273)
|+-+++++-+....+-+.- ++| -++||...+.-++.++ +..|+|+..- .-+-+.+++.|.+.++|+
T Consensus 21 ~m~~~aL~IL~~AmsstTG---A~~~~K~EKaAyga~aEAlrDd~~~R~IK~~v--------ne~~L~~L~~el~~~kRk 89 (195)
T PF01616_consen 21 GMKSVALGILDNAMSSTTG---ATEAQKNEKAAYGAAAEALRDDERTRQIKVHV--------NEQILPKLKHELRKLKRK 89 (195)
T ss_pred CchhhhHHHHHHhccCCcc---CchhhhHHHHHHHHHHHHHcCcHHHHHHHHHH--------hHHHHHHHHHHHHHHHHH
Confidence 6777888999888886632 233 3557777777777776 3445554321 113455566666655555
Q ss_pred HHHHHHhcccCccccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 024062 105 VKLLEEMYPQGEKAETSWALTVLGYLAKLVLGILGFIVSVAWV 147 (273)
Q Consensus 105 ~~~le~~y~~~~~~~~~~~~~~l~~~~kLl~Gii~lllSi~w~ 147 (273)
.. +.....++.+++.++.|++=-
T Consensus 90 ~~--------------------il~~~~li~a~v~l~ts~~~~ 112 (195)
T PF01616_consen 90 RR--------------------ILHIVELIAAIVALLTSVVMA 112 (195)
T ss_pred HH--------------------HHHHHHHHHHHHHHHHHHHHH
Confidence 43 344566666666666665433
No 70
>PF10845 DUF2576: Protein of unknown function (DUF2576); InterPro: IPR022556 The function of this viral family of proteins is unknown. The entry contains Orf5 from Autographa californica nuclear polyhedrosis virus (AcMNPV).
Probab=50.36 E-value=22 Score=24.63 Aligned_cols=21 Identities=14% Similarity=0.328 Sum_probs=17.0
Q ss_pred hHhHHHHHHHHHHHHHHHHHH
Q 024062 85 RKWRKNVKSVEKELLQLEEDV 105 (273)
Q Consensus 85 ~k~rr~~~~l~~~~~~Le~~~ 105 (273)
.+-|||++.||+.+++|..+.
T Consensus 14 eqlrrelnsLR~~vhelctRs 34 (48)
T PF10845_consen 14 EQLRRELNSLRRSVHELCTRS 34 (48)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 346789999999999988775
No 71
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=50.06 E-value=1.6e+02 Score=25.11 Aligned_cols=20 Identities=20% Similarity=0.556 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024062 90 NVKSVEKELLQLEEDVKLLE 109 (273)
Q Consensus 90 ~~~~l~~~~~~Le~~~~~le 109 (273)
+++.++++...++++.+.+.
T Consensus 131 ~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 131 RLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433
No 72
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=49.85 E-value=96 Score=27.41 Aligned_cols=67 Identities=24% Similarity=0.346 Sum_probs=37.7
Q ss_pred hHHHHhhcccCCCcccChHHHHH-HHHHHHHHHHHHHHHHHHHHhhhccCCcChHhHHHHHHHHHHHHHHHHHHHHHHH
Q 024062 33 PLGLIFSFIRRPKAVITRSQYIK-EATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEE 110 (273)
Q Consensus 33 Pi~LI~~f~~Rpk~~is~~~~~~-~~~~i~~~~~~l~e~~~~l~~~~~~~~~~~k~rr~~~~l~~~~~~Le~~~~~le~ 110 (273)
-+++|.+|-+ |.. +-..+..+++.|.-+...||++.+.... +-..++++.++.|+..+.++-+..|.
T Consensus 92 ~l~FI~sf~~----------Y~~leL~s~~~ei~~L~~kI~~L~~~in~~~k-~~~n~~i~slk~EL~d~iKe~e~~em 159 (181)
T PF04645_consen 92 ELSFIDSFNQ----------YKNLELKSIKKEIEILRLKISSLQKEINKNKK-KDLNEEIESLKSELNDLIKEREIREM 159 (181)
T ss_pred hhHHHHHHHH----------hhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3467777643 433 5556666777888888888876542111 11123555566666666555444443
No 73
>PLN02678 seryl-tRNA synthetase
Probab=49.44 E-value=57 Score=32.70 Aligned_cols=58 Identities=19% Similarity=0.189 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcc----CCcChHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 024062 54 IKEATELGKKARELKKAADTLHQEERS----GSKGRKWRKNVKSVEKELLQLEEDVKLLEEM 111 (273)
Q Consensus 54 ~~~~~~i~~~~~~l~e~~~~l~~~~~~----~~~~~k~rr~~~~l~~~~~~Le~~~~~le~~ 111 (273)
.+++.++..+.++++.+..++.++-.. +.....-+.+.+.++++...||.+.+.+++.
T Consensus 39 d~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~ 100 (448)
T PLN02678 39 DKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAA 100 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335556666666666666555542221 1111222345566666666666666655544
No 74
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=49.25 E-value=37 Score=27.66 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 024062 87 WRKNVKSVEKELLQLEEDVKLLEE 110 (273)
Q Consensus 87 ~rr~~~~l~~~~~~Le~~~~~le~ 110 (273)
.|++++.|+..+..|+++.+.++.
T Consensus 94 tk~ev~~L~~RI~~Le~~l~~l~~ 117 (118)
T TIGR01837 94 SREEIEALSAKIEQLAVQVEELRR 117 (118)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456888888888888888777764
No 75
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=49.13 E-value=58 Score=31.49 Aligned_cols=26 Identities=23% Similarity=0.393 Sum_probs=13.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024062 175 WGLLGTAAFAFFCFYLLLAVIAGAMML 201 (273)
Q Consensus 175 fpll~~i~~~~~~~Yll~cs~~G~~~~ 201 (273)
|| .|..--..---++.+|.+-|++.+
T Consensus 200 wp-~~~~~~~fr~~fl~f~~~~~~vq~ 225 (330)
T PF07851_consen 200 WP-DGEAYQKFRPQFLLFSLYQSVVQF 225 (330)
T ss_pred CC-CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 56 344434444455566666665544
No 76
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=49.01 E-value=1.1e+02 Score=22.88 Aligned_cols=18 Identities=17% Similarity=0.335 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHhhhc
Q 024062 62 KKARELKKAADTLHQEER 79 (273)
Q Consensus 62 ~~~~~l~e~~~~l~~~~~ 79 (273)
++..+|++.|+.|....-
T Consensus 12 e~Ia~L~eEGekLSk~el 29 (74)
T PF12329_consen 12 EQIAQLMEEGEKLSKKEL 29 (74)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344499999999986543
No 77
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=48.57 E-value=61 Score=33.88 Aligned_cols=24 Identities=17% Similarity=0.292 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 024062 88 RKNVKSVEKELLQLEEDVKLLEEM 111 (273)
Q Consensus 88 rr~~~~l~~~~~~Le~~~~~le~~ 111 (273)
+.|+.+++.++.+-++.++.+.+.
T Consensus 127 q~eL~~Lk~~ieqaq~~~~El~~~ 150 (907)
T KOG2264|consen 127 QLELSALKGEIEQAQRQLEELRET 150 (907)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhh
Confidence 345566666666555555555443
No 78
>PRK10263 DNA translocase FtsK; Provisional
Probab=48.51 E-value=1.8e+02 Score=33.25 Aligned_cols=30 Identities=20% Similarity=0.114 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 024062 129 YLAKLVLGILGFIVSVAWVAHIVIYLLINP 158 (273)
Q Consensus 129 ~~~kLl~Gii~lllSi~w~i~iil~~i~k~ 158 (273)
+.++-++|++++++++.++++++=|.-.++
T Consensus 20 rrL~E~~gIlLlllAlfL~lALiSYsPsDP 49 (1355)
T PRK10263 20 RRLLEALLILIVLFAVWLMAALLSFNPSDP 49 (1355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCccCC
Confidence 457788999999999999999998887775
No 79
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.35 E-value=26 Score=33.39 Aligned_cols=27 Identities=30% Similarity=0.534 Sum_probs=13.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024062 171 LDDLWGLLGTAAFAFFCFYLLLAVIAGAMMLG 202 (273)
Q Consensus 171 l~~~fpll~~i~~~~~~~Yll~cs~~G~~~~G 202 (273)
.|+.|-+ + +.|-.|+.=+.+.....+|
T Consensus 193 sDSSf~F-~----~FFF~y~~q~~~~v~qAvg 219 (313)
T KOG3088|consen 193 TDSSFNF-G----AFFFTYFFQIVFCVFQAVG 219 (313)
T ss_pred cccchhh-H----HHHHHHHHHHHHHHHHHHc
Confidence 3666773 2 3333444444444555555
No 80
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=48.14 E-value=1.3e+02 Score=23.55 Aligned_cols=27 Identities=26% Similarity=0.495 Sum_probs=23.1
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 024062 85 RKWRKNVKSVEKELLQLEEDVKLLEEM 111 (273)
Q Consensus 85 ~k~rr~~~~l~~~~~~Le~~~~~le~~ 111 (273)
.+|.++++.++.+...|.++.+.|...
T Consensus 45 ~rwek~v~~L~~e~~~l~~E~e~L~~~ 71 (87)
T PF12709_consen 45 ARWEKKVDELENENKALKRENEQLKKK 71 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999998887664
No 81
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=48.09 E-value=1.1e+02 Score=22.79 Aligned_cols=41 Identities=27% Similarity=0.285 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCcChHhHHHHHHHHHHHHHHHHH
Q 024062 58 TELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEED 104 (273)
Q Consensus 58 ~~i~~~~~~l~e~~~~l~~~~~~~~~~~k~rr~~~~l~~~~~~Le~~ 104 (273)
..++.|.++|++..++++.+- ..-|.+....+.|-..|.++
T Consensus 3 ~~Le~kle~Li~~~~~L~~EN------~~Lr~q~~~~~~ER~~L~ek 43 (65)
T TIGR02449 3 QALAAQVEHLLEYLERLKSEN------RLLRAQEKTWREERAQLLEK 43 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH
Confidence 356777888888888888653 23334444444444444433
No 82
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=47.90 E-value=35 Score=30.61 Aligned_cols=30 Identities=33% Similarity=0.501 Sum_probs=19.1
Q ss_pred CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024062 44 PKAVITRSQYIKEATELGKKARELKKAADTLHQEE 78 (273)
Q Consensus 44 pk~~is~~~~~~~~~~i~~~~~~l~e~~~~l~~~~ 78 (273)
|++ |+ .+..+.+..+-++|+..++.|+++.
T Consensus 25 ~~~-i~----~e~e~~~~~d~~~L~~~Q~~L~~e~ 54 (228)
T PRK06800 25 PKP-IE----VEVEEEIQKDHEELLAQQKSLHKEL 54 (228)
T ss_pred Cch-hh----HhhcchhhhhHHHHHHHHHHHHHHH
Confidence 455 54 3345556667778888888887643
No 83
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=47.66 E-value=2.4e+02 Score=28.34 Aligned_cols=17 Identities=24% Similarity=0.405 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024062 8 YVVALATIVGSVLFSIF 24 (273)
Q Consensus 8 f~i~~l~~iG~~lfv~y 24 (273)
.+.+++++++.++..++
T Consensus 146 ~~~~~~~~~~~~~~l~~ 162 (582)
T PRK11176 146 VVREGASIIGLFIMMFY 162 (582)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444443333
No 84
>TIGR02978 phageshock_pspC phage shock protein C. All members of this protein family are the phage shock protein PspC. These proteins contain a PspC domain, as do other members of the larger family of proteins described by Pfam model pfam04024. The phage shock regulon is restricted to the Proteobacteria and somewhat sparsely distributed there. It is expressed, under positive control of a sigma-54-dependent transcription factor, PspF, which binds and is modulated by PspA. Stresses that induce the psp regulon include phage secretin overexpression, ethanol, heat shock, and protein export defects.
Probab=47.50 E-value=61 Score=26.75 Aligned_cols=28 Identities=18% Similarity=0.388 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCc
Q 024062 89 KNVKSVEKELLQLEEDVKLLEEMYPQGE 116 (273)
Q Consensus 89 r~~~~l~~~~~~Le~~~~~le~~y~~~~ 116 (273)
+.++.++++.+.+|++.+++|.-.+..+
T Consensus 84 ~~l~~~~~~~~~~e~Rl~~mE~yVTS~~ 111 (121)
T TIGR02978 84 QALREVKREFRDLERRLRNMERYVTSDT 111 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 5688899999999999999888655443
No 85
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=47.08 E-value=70 Score=33.71 Aligned_cols=45 Identities=18% Similarity=0.296 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcChHhHHHHHHHHHHHHHHHHHH
Q 024062 52 QYIKEATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDV 105 (273)
Q Consensus 52 ~~~~~~~~i~~~~~~l~e~~~~l~~~~~~~~~~~k~rr~~~~l~~~~~~Le~~~ 105 (273)
++....++-+++.+.+++..++++ .+...++++++.++..||++-
T Consensus 5 kL~~Lq~ek~~E~~~l~~~~~~lk---------~~~~~el~~Lk~~vqkLEDEK 49 (654)
T PF09798_consen 5 KLELLQQEKQKERQALKSSVEELK---------ESHEEELNKLKSEVQKLEDEK 49 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------HHhHHHHHHHHHHHHHHHHHH
Confidence 333333334434444444444443 345567788888888777753
No 86
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=46.73 E-value=4.3e+02 Score=30.52 Aligned_cols=38 Identities=21% Similarity=0.316 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh-----hhhhhhhHHHHhhccc
Q 024062 5 FPEYVVALATIVGSVLFSIFGG-----VGIACLPLGLIFSFIR 42 (273)
Q Consensus 5 f~~f~i~~l~~iG~~lfv~y~g-----vGlaalPi~LI~~f~~ 42 (273)
+..++.++..++|.+.+.++-+ +-++.+|+-++-....
T Consensus 175 ~~~~~~~~~~~i~~~i~~~~~sw~Lalv~l~~~pl~~~~~~~~ 217 (1466)
T PTZ00265 175 FITIFTYASAFLGLYIWSLFKNARLTLCITCVFPLIYICGVIC 217 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666655443 4556667766666544
No 87
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=46.72 E-value=1.4e+02 Score=23.66 Aligned_cols=35 Identities=6% Similarity=0.032 Sum_probs=22.2
Q ss_pred CcChHhHHHHHHHHHHHHHHHHHHHHHHHhcccCc
Q 024062 82 SKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGE 116 (273)
Q Consensus 82 ~~~~k~rr~~~~l~~~~~~Le~~~~~le~~y~~~~ 116 (273)
..+..+|..++++++......+..+++......++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 136 (181)
T PF12729_consen 102 ILSPEEKQLLEEFKEAWKAYRKLRDQVIELAKSGD 136 (181)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 34556777777777777777666666555444443
No 88
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=46.44 E-value=1.7e+02 Score=24.14 Aligned_cols=29 Identities=10% Similarity=0.117 Sum_probs=13.6
Q ss_pred cChHhH-HHHHHHHHHHHHHHHHHHHHHHh
Q 024062 83 KGRKWR-KNVKSVEKELLQLEEDVKLLEEM 111 (273)
Q Consensus 83 ~~~k~r-r~~~~l~~~~~~Le~~~~~le~~ 111 (273)
+|...+ +.-..+++.+..|++..+..+..
T Consensus 73 ls~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 102 (158)
T PF03938_consen 73 LSEEERQKRQQELQQKEQELQQFQQQAQQQ 102 (158)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444433 23334555555555555554443
No 89
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=46.13 E-value=75 Score=30.93 Aligned_cols=55 Identities=24% Similarity=0.447 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-----hhccCCcC-----hHhHHHHHHHHHHHHHHHHHHHH
Q 024062 53 YIKEATELGKKARELKKAADTLHQ-----EERSGSKG-----RKWRKNVKSVEKELLQLEEDVKL 107 (273)
Q Consensus 53 ~~~~~~~i~~~~~~l~e~~~~l~~-----~~~~~~~~-----~k~rr~~~~l~~~~~~Le~~~~~ 107 (273)
|++....+.++.++|-++.++|++ ++++.+++ -+-|+.+.++++|.++++-+-=.
T Consensus 289 y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI~qMdvrIGV 353 (359)
T PF10498_consen 289 YKQASEGVSERTRELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEIKQMDVRIGV 353 (359)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhe
Confidence 333444455555555555555553 22323332 25556777777777776655433
No 90
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.88 E-value=1.4e+02 Score=28.40 Aligned_cols=74 Identities=16% Similarity=0.235 Sum_probs=40.9
Q ss_pred HHhhcccCC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC-cCh----HhHHHHHHHHHHHHHHHHHHHHHH
Q 024062 36 LIFSFIRRP-KAVITRSQYIKEATELGKKARELKKAADTLHQEERSGS-KGR----KWRKNVKSVEKELLQLEEDVKLLE 109 (273)
Q Consensus 36 LI~~f~~Rp-k~~is~~~~~~~~~~i~~~~~~l~e~~~~l~~~~~~~~-~~~----k~rr~~~~l~~~~~~Le~~~~~le 109 (273)
+.|+|+-+= .. .+.+++++.+.+|+++..+.-.....|+.+-.+-+ +-. +.-+.++.+.+..-+|.+..+++|
T Consensus 103 ~~K~YV~P~~l~-~~~~k~e~~k~~Ld~~~~~~~~~~~~l~~~va~v~q~~~~qq~Els~~L~~l~~~~~~~s~~~~k~e 181 (300)
T KOG2629|consen 103 FVKSYVLPRFLG-ESKDKLEADKRQLDDQFDKAAKSLNALMDEVAQVSQLLATQQSELSRALASLKNTLVQLSRNIEKLE 181 (300)
T ss_pred HHHHHHHHHhhC-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 445555411 12 56667788888888888888877777776443221 111 222344455555445555555544
Q ss_pred H
Q 024062 110 E 110 (273)
Q Consensus 110 ~ 110 (273)
.
T Consensus 182 s 182 (300)
T KOG2629|consen 182 S 182 (300)
T ss_pred H
Confidence 4
No 91
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=45.34 E-value=76 Score=30.22 Aligned_cols=59 Identities=22% Similarity=0.374 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC-cChHhHHHHHHHHHHHHHHHHHHHHHH
Q 024062 51 SQYIKEATELGKKARELKKAADTLHQEERSGS-KGRKWRKNVKSVEKELLQLEEDVKLLE 109 (273)
Q Consensus 51 ~~~~~~~~~i~~~~~~l~e~~~~l~~~~~~~~-~~~k~rr~~~~l~~~~~~Le~~~~~le 109 (273)
++|++.+.+++.++.+++|..+.+..+.+.-. .=...|.+.+..+..+..|-++++.+.
T Consensus 37 ~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~ 96 (294)
T COG1340 37 SELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELK 96 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677777777777777777765443221 112233333444444444444444433
No 92
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=45.19 E-value=1.3e+02 Score=25.67 Aligned_cols=63 Identities=16% Similarity=0.188 Sum_probs=33.5
Q ss_pred CCcccChHHHHHHHHHHHHHH-HHHHHHHHHHHhhhccCCcCh-----HhHHHHHHHHHHHHHHHHHHHH
Q 024062 44 PKAVITRSQYIKEATELGKKA-RELKKAADTLHQEERSGSKGR-----KWRKNVKSVEKELLQLEEDVKL 107 (273)
Q Consensus 44 pk~~is~~~~~~~~~~i~~~~-~~l~e~~~~l~~~~~~~~~~~-----k~rr~~~~l~~~~~~Le~~~~~ 107 (273)
|.. +|..-|.+.+.+++.-- .+.-|..+.|+.....|-.|. -.|++...++++.+.|+++.+.
T Consensus 2 ~~~-lT~~G~~~L~~El~~L~~~~r~~~~~~i~~Ar~~GDlsENaeY~aak~~~~~le~rI~~L~~~L~~ 70 (156)
T TIGR01461 2 TPL-ITPEGYEKLKQELNYLWREERPEVTQKVTWAASLGDRSENADYQYGKKRLREIDRRVRFLTKRLEN 70 (156)
T ss_pred Ccc-cCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334 88888888777777432 344456666665444343321 1233444455555555544443
No 93
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=44.92 E-value=1.1e+02 Score=29.14 Aligned_cols=12 Identities=17% Similarity=0.387 Sum_probs=3.1
Q ss_pred hhhHhhheeeee
Q 024062 201 LGLRLVFITIHP 212 (273)
Q Consensus 201 ~GiR~~~~~i~p 212 (273)
+|+.|-=.++.|
T Consensus 189 l~~~f~~y~l~P 200 (314)
T PF04111_consen 189 LNFKFQRYRLVP 200 (314)
T ss_dssp CT---SSEEEE-
T ss_pred hCCCcccceeEe
Confidence 344333334444
No 94
>PF10079 DUF2317: Uncharacterized protein conserved in bacteria (DUF2317); InterPro: IPR011199 Members of this protein family include BshC, which is an enzyme required for bacillithiol biosynthesis and described as a cysteine-adding enzyme. Bacillithiol is a low-molecular-weight thiol, an analog of glutathione and mycothiol, and is found largely in the Firmicutes.
Probab=44.79 E-value=2e+02 Score=29.56 Aligned_cols=101 Identities=18% Similarity=0.244 Sum_probs=53.7
Q ss_pred HHHHhhcc---cCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC-Cc-ChHhHHHHH--------HHHHHHHH
Q 024062 34 LGLIFSFI---RRPKAVITRSQYIKEATELGKKARELKKAADTLHQEERSG-SK-GRKWRKNVK--------SVEKELLQ 100 (273)
Q Consensus 34 i~LI~~f~---~Rpk~~is~~~~~~~~~~i~~~~~~l~e~~~~l~~~~~~~-~~-~~k~rr~~~--------~l~~~~~~ 100 (273)
.+..+... .++.. + ...+.+.+.++++.-+++.+...++...-.+. .. ..|..+.++ ..+++-..
T Consensus 408 ~~~~~~~~~~~~~~~~-~-~~~f~~~~~~l~~~~~~l~~~~~~~d~tl~~~~e~~~~~~~~ql~~Le~k~~~a~~rk~~~ 485 (542)
T PF10079_consen 408 EELLKERWLEEQDPSE-I-EDDFEEEKEQLEAQFEPLKEKAAKIDPTLEGLVEKNESKILKQLDYLEKKLLKAEKRKHET 485 (542)
T ss_pred HHHHHHHHHHhccccc-H-HHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 45565555 43322 2 23467788888888888887777776421110 01 122223333 33333444
Q ss_pred HHHHHHHHHHh-cccCccccchhhhhHHHHHHHHHHHHH
Q 024062 101 LEEDVKLLEEM-YPQGEKAETSWALTVLGYLAKLVLGIL 138 (273)
Q Consensus 101 Le~~~~~le~~-y~~~~~~~~~~~~~~l~~~~kLl~Gii 138 (273)
.-++.++++.. ++.+.-+|+.| |++-++.+--.+++
T Consensus 486 ~l~q~~~l~~~L~P~g~~QERv~--n~~~f~~kyG~~~i 522 (542)
T PF10079_consen 486 ALRQLDRLENSLFPNGSPQERVY--NFFYFLNKYGPDFI 522 (542)
T ss_pred HHHHHHHHHhhcCCCCCCcccch--hHHHHHHHhhHHHH
Confidence 44455556665 77777777744 66666666544443
No 95
>KOG4253 consensus Tryptophan-rich basic nuclear protein [General function prediction only]
Probab=44.73 E-value=2e+02 Score=25.15 Aligned_cols=16 Identities=13% Similarity=0.281 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHh
Q 024062 61 GKKARELKKAADTLHQ 76 (273)
Q Consensus 61 ~~~~~~l~e~~~~l~~ 76 (273)
++++++..|+-++++.
T Consensus 40 nkdakk~~q~~~ei~d 55 (175)
T KOG4253|consen 40 NKDAKKESQKVAEIQD 55 (175)
T ss_pred chhHHHHHHHHHHHHH
Confidence 3455555555555554
No 96
>TIGR03142 cytochro_ccmI cytochrome c-type biogenesis protein CcmI. This TPR repeat-containing protein is the CcmI protein (also called CycH) of c-type cytochrome biogenesis. CcmI is thought to act as an apo-cytochrome c chaperone. This model describes the N-terminal region of the protein, Members of this protein family
Probab=44.46 E-value=1.7e+02 Score=23.55 Aligned_cols=20 Identities=10% Similarity=0.150 Sum_probs=12.3
Q ss_pred HHHHHHHHHhhhccCCcChH
Q 024062 67 LKKAADTLHQEERSGSKGRK 86 (273)
Q Consensus 67 l~e~~~~l~~~~~~~~~~~k 86 (273)
.+++-.+++++..+|..+..
T Consensus 41 yr~qL~ELe~d~~~G~l~~~ 60 (117)
T TIGR03142 41 YRDRLAELERDLAEGLLDEA 60 (117)
T ss_pred HHHHHHHHHHHHHcCCCCHH
Confidence 35666666666666666544
No 97
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=44.29 E-value=1.2e+02 Score=22.10 Aligned_cols=51 Identities=20% Similarity=0.322 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCcC--hHhHHHHHHHHHHHHHHHHHHH
Q 024062 56 EATELGKKARELKKAADTLHQEERSGSKG--RKWRKNVKSVEKELLQLEEDVK 106 (273)
Q Consensus 56 ~~~~i~~~~~~l~e~~~~l~~~~~~~~~~--~k~rr~~~~l~~~~~~Le~~~~ 106 (273)
.-.++++..++..|.-++++-+-+....+ .....++..++++...|+++.+
T Consensus 26 ~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 26 LIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444444445555555555554433111 2233466677777777777654
No 98
>PF06584 DIRP: DIRP; InterPro: IPR010561 DIRP (Domain in Rb-related Pathway) is postulated to be involved in the Rb-related pathway, which is encoded by multiple eukaryotic genomes and is present in proteins including lin-9 of Caenorhabditis elegans, aly of Drosophila melanogaster and mustard weed. Studies of lin-9 and aly of fruit fly proteins containing DIRP suggest that this domain might be involved in development. Aly, lin-9, act in parallel to, or downstream of, activation of MAPK by the RTK-Ras signalling pathway.
Probab=43.94 E-value=51 Score=26.84 Aligned_cols=37 Identities=19% Similarity=0.234 Sum_probs=25.1
Q ss_pred HHHhhcccCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024062 35 GLIFSFIRRPKAVITRSQYIKEATELGKKARELKKAADTLHQ 76 (273)
Q Consensus 35 ~LI~~f~~Rpk~~is~~~~~~~~~~i~~~~~~l~e~~~~l~~ 76 (273)
..|+.-..+|++ .|..=+++|+.+++ +-++..|++|+
T Consensus 37 ~~IRr~mGKPRR-fS~aF~~eER~~Le----~~R~~iR~lQ~ 73 (109)
T PF06584_consen 37 QKIRRSMGKPRR-FSPAFLEEEREELE----RKRQKIRQLQQ 73 (109)
T ss_pred HHHHHHcCCCCc-CcHHHHHHHHHHHH----HHHHHHHHHhh
Confidence 456777777877 77777777887777 44555555553
No 99
>PF06518 DUF1104: Protein of unknown function (DUF1104); InterPro: IPR009488 This family consists of several hypothetical proteins of unknown function which appear to be found exclusively in Helicobacter pylori.; PDB: 2XRH_A.
Probab=43.88 E-value=1.3e+02 Score=23.80 Aligned_cols=46 Identities=13% Similarity=0.193 Sum_probs=28.7
Q ss_pred cChHHHHHHHHHHHHHHHHHHH-HHHHHHh----hh--ccCCcChHhHHHHHH
Q 024062 48 ITRSQYIKEATELGKKARELKK-AADTLHQ----EE--RSGSKGRKWRKNVKS 93 (273)
Q Consensus 48 is~~~~~~~~~~i~~~~~~l~e-~~~~l~~----~~--~~~~~~~k~rr~~~~ 93 (273)
+.+.++.+-+.++..|..++.+ ..+..+. .. +-+.+|.+||++...
T Consensus 18 v~~k~~~dy~~Ei~KR~~~m~~~~~k~f~~~~~~~~~kn~~~ms~~e~~k~~~ 70 (93)
T PF06518_consen 18 VDPKDVPDYKMEIHKRLKKMKEKEAKDFKKQFKEAARKNLSKMSVEERKKRRE 70 (93)
T ss_dssp S-GGGHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 6777888999999999998776 4444443 22 235677777765543
No 100
>PRK01622 OxaA-like protein precursor; Validated
Probab=43.76 E-value=1.4e+02 Score=27.57 Aligned_cols=17 Identities=18% Similarity=0.274 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHhhhc
Q 024062 63 KARELKKAADTLHQEER 79 (273)
Q Consensus 63 ~~~~l~e~~~~l~~~~~ 79 (273)
|-+++.=+-+++|+|++
T Consensus 92 km~~iqP~l~~iq~kyk 108 (256)
T PRK01622 92 KMAVMKPELDKIQAKLK 108 (256)
T ss_pred HHHHhCHHHHHHHHHHh
Confidence 33455555666666663
No 101
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=43.73 E-value=2.1e+02 Score=24.59 Aligned_cols=24 Identities=13% Similarity=0.476 Sum_probs=16.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 024062 124 LTVLGYLAKLVLGILGFIVSVAWV 147 (273)
Q Consensus 124 ~~~l~~~~kLl~Gii~lllSi~w~ 147 (273)
|..+.|.+-.++|++.++++++.+
T Consensus 152 ~~~lr~~~g~i~~~~a~~la~~r~ 175 (177)
T PF07798_consen 152 WDTLRWLVGVIFGCVALVLAILRL 175 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666777777777776654
No 102
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=43.22 E-value=1.3e+02 Score=28.58 Aligned_cols=58 Identities=12% Similarity=0.192 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhh--hhhHHHHhhcccCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024062 9 VVALATIVGSVLFSIFGGVGIA--CLPLGLIFSFIRRPKAVITRSQYIKEATELGKKARELKKAADTLHQ 76 (273)
Q Consensus 9 ~i~~l~~iG~~lfv~y~gvGla--alPi~LI~~f~~Rpk~~is~~~~~~~~~~i~~~~~~l~e~~~~l~~ 76 (273)
....+++++++.++++...|+- ..|+.=--+.. +++ .|.+|+ .+-++.++|+..+++.
T Consensus 57 l~~~~~~~~~~y~~F~~~WGlNY~R~pl~~~l~l~--~~~-~~~~eL-------~~l~~~li~~~N~l~~ 116 (318)
T PF12725_consen 57 LLNILFFLSVLYFLFYLLWGLNYYRPPLSERLGLE--TEE-YSTEEL-------KELTEYLIEKANELRE 116 (318)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCcCHHHHcCCC--CCC-CCHHHH-------HHHHHHHHHHHHHHHH
Confidence 4666777777777777777774 34443333321 222 444444 4444455555555554
No 103
>PRK01885 greB transcription elongation factor GreB; Reviewed
Probab=43.21 E-value=1.7e+02 Score=25.01 Aligned_cols=63 Identities=16% Similarity=0.241 Sum_probs=35.5
Q ss_pred CCcccChHHHHHHHHHHHHH-HHHHHHHHHHHHhhhccCCcCh-----HhHHHHHHHHHHHHHHHHHHHH
Q 024062 44 PKAVITRSQYIKEATELGKK-ARELKKAADTLHQEERSGSKGR-----KWRKNVKSVEKELLQLEEDVKL 107 (273)
Q Consensus 44 pk~~is~~~~~~~~~~i~~~-~~~l~e~~~~l~~~~~~~~~~~-----k~rr~~~~l~~~~~~Le~~~~~ 107 (273)
|.. +|.+-|++.+.+++.. ..+.-|..+.++.....|-.+. -.|++...++++.+.|+++.+.
T Consensus 4 ~~~-lT~~g~~~L~~EL~~L~~~~r~e~~~~i~~Ar~~GDl~ENaeY~aAk~~~~~~e~rI~~L~~~L~~ 72 (157)
T PRK01885 4 TNY-ITREGYARLKQELDYLWREERPEVTQKVSWAASLGDRSENADYIYGKKRLREIDRRVRFLTKRLEN 72 (157)
T ss_pred Ccc-cCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHcCCcchhhcHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 334 8888888888888853 3345566666665544443221 1334444555555555555444
No 104
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=42.99 E-value=1.2e+02 Score=22.91 Aligned_cols=28 Identities=14% Similarity=0.070 Sum_probs=15.2
Q ss_pred ChHhHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 024062 84 GRKWRKNVKSVEKELLQLEEDVKLLEEMYPQ 114 (273)
Q Consensus 84 ~~k~rr~~~~l~~~~~~Le~~~~~le~~y~~ 114 (273)
|.++|| .|++-|+.|.+|--++..+...
T Consensus 4 Se~E~r---~L~eiEr~L~~~DP~fa~~l~~ 31 (82)
T PF11239_consen 4 SEHEQR---RLEEIERQLRADDPRFAARLRS 31 (82)
T ss_pred CHHHHH---HHHHHHHHHHhcCcHHHHHhcc
Confidence 444555 4555566666655555555444
No 105
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=42.97 E-value=84 Score=32.01 Aligned_cols=26 Identities=23% Similarity=0.190 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024062 51 SQYIKEATELGKKARELKKAADTLHQ 76 (273)
Q Consensus 51 ~~~~~~~~~i~~~~~~l~e~~~~l~~ 76 (273)
.|+..||.|+..+.-+-+|.-+.+++
T Consensus 524 kQiq~Ek~ELkmd~lrerelreslek 549 (641)
T KOG3915|consen 524 KQIQLEKTELKMDFLRERELRESLEK 549 (641)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666555555555555554
No 106
>KOG3966 consensus p53-mediated apoptosis protein EI24/PIG8 [Signal transduction mechanisms; Defense mechanisms]
Probab=42.87 E-value=3.1e+02 Score=26.27 Aligned_cols=15 Identities=33% Similarity=0.693 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHH
Q 024062 137 ILGFIVSVAWVAHIV 151 (273)
Q Consensus 137 ii~lllSi~w~i~ii 151 (273)
++.++++-+|++-|+
T Consensus 140 ~ls~lfg~iwVlPiF 154 (360)
T KOG3966|consen 140 ILSLLFGYIWVLPIF 154 (360)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445566666766665
No 107
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=42.72 E-value=82 Score=29.09 Aligned_cols=49 Identities=20% Similarity=0.253 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCcChHhHHHHHHHHHHHHHHHHHHHHHHH
Q 024062 56 EATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEE 110 (273)
Q Consensus 56 ~~~~i~~~~~~l~e~~~~l~~~~~~~~~~~k~rr~~~~l~~~~~~Le~~~~~le~ 110 (273)
....+..+-|..+++-.+||++- ++.+.++..+++|+..|..|..+|=|
T Consensus 80 iLpIVtsQRDRFR~Rn~ELE~el------r~~~~~~~~L~~Ev~~L~~DN~kLYE 128 (248)
T PF08172_consen 80 ILPIVTSQRDRFRQRNAELEEEL------RKQQQTISSLRREVESLRADNVKLYE 128 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677778888888888764 46777888888888888888666544
No 108
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=42.17 E-value=80 Score=34.18 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024062 53 YIKEATELGKKARELKKAADTL 74 (273)
Q Consensus 53 ~~~~~~~i~~~~~~l~e~~~~l 74 (273)
|.+-..++++|-+.|.|+++.=
T Consensus 322 y~kGqaELerRRq~leeqqqre 343 (1118)
T KOG1029|consen 322 YEKGQAELERRRQALEEQQQRE 343 (1118)
T ss_pred HhhhhHHHHHHHHHHHHHHHHH
Confidence 4445567777777777665543
No 109
>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]
Probab=41.95 E-value=3.7e+02 Score=26.88 Aligned_cols=37 Identities=19% Similarity=0.088 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCchH---HHHHHh
Q 024062 135 LGILGFIVSVAWVAHIVIYLLINPPLHPFLN---EVFIKL 171 (273)
Q Consensus 135 ~Gii~lllSi~w~i~iil~~i~k~~~~~fLN---~~fi~l 171 (273)
+|+...+-++..-+--++..+..-|+..+++ ++|.|.
T Consensus 348 leL~Lt~gT~~~s~~~~va~ifGMNl~~~l~~~~~~F~~v 387 (414)
T KOG2662|consen 348 LELLLTIGTFCLSVFSVVAGIFGMNLPSSLEEDHYAFKWV 387 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCccchhccCCChhhhh
Confidence 4444444444444455566677766666664 355444
No 110
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=41.90 E-value=1.4e+02 Score=24.17 Aligned_cols=54 Identities=15% Similarity=0.348 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhhhhh-------------hhhhHHHHhhcccCCCcccChHHHHHHHHHHHHHHHHHH
Q 024062 13 ATIVGSVLFSIFGGVGI-------------ACLPLGLIFSFIRRPKAVITRSQYIKEATELGKKARELK 68 (273)
Q Consensus 13 l~~iG~~lfv~y~gvGl-------------aalPi~LI~~f~~Rpk~~is~~~~~~~~~~i~~~~~~l~ 68 (273)
+..+|-+.|..+-..|+ +..=+.++.+|..|.- -.+-+|.+++++.++..+++.
T Consensus 13 v~~~Gg~~Y~~l~~~G~d~~~AGi~sq~~lv~glvgW~~sYlfRV~--t~~MTy~~Q~k~Ye~a~~~~~ 79 (104)
T PF11460_consen 13 VFLLGGLLYGGLQAAGLDSLSAGIWSQALLVLGLVGWVSSYLFRVV--TGKMTYMQQRKDYEEAVDQLT 79 (104)
T ss_pred HHHHHHHHHHHHHHcCCCchhhhHHHHHHHHHHHHHHHhHHHhhhc--cCCCcHHHHHHHHHHHHHHHh
Confidence 44567777777777775 2333788889988761 222346666666665544443
No 111
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=41.55 E-value=1.4e+02 Score=28.29 Aligned_cols=14 Identities=7% Similarity=0.214 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHH
Q 024062 131 AKLVLGILGFIVSV 144 (273)
Q Consensus 131 ~kLl~Gii~lllSi 144 (273)
+--.+|-+++++..
T Consensus 171 INAA~Gq~~LLL~~ 184 (314)
T PF04111_consen 171 INAAWGQTALLLQT 184 (314)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45567776666554
No 112
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=41.03 E-value=1.9e+02 Score=23.21 Aligned_cols=44 Identities=14% Similarity=0.217 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhcCCCCCCchHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024062 143 SVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGTAAFAFFCFYLLLAVIAGAMML 201 (273)
Q Consensus 143 Si~w~i~iil~~i~k~~~~~fLN~~fi~l~~~fpll~~i~~~~~~~Yll~cs~~G~~~~ 201 (273)
++..++.+++-.... .|||+.|| -+. .+++ ..++.....||..+
T Consensus 49 G~~~v~pil~G~~lG-----------~WLD~~~~-t~~-~~tl--~~lllGv~~G~~n~ 92 (100)
T TIGR02230 49 GWSVAIPTLLGVAVG-----------IWLDRHYP-SPF-SWTL--TMLIVGVVIGCLNA 92 (100)
T ss_pred HHHHHHHHHHHHHHH-----------HHHHhhcC-CCc-HHHH--HHHHHHHHHHHHHH
Confidence 344445555555444 67888887 233 2222 35556666666554
No 113
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=40.92 E-value=1.4e+02 Score=29.25 Aligned_cols=23 Identities=9% Similarity=0.075 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 024062 54 IKEATELGKKARELKKAADTLHQ 76 (273)
Q Consensus 54 ~~~~~~i~~~~~~l~e~~~~l~~ 76 (273)
+.....+.+++++-+|+...+|+
T Consensus 213 sa~~eklR~r~eeeme~~~aeq~ 235 (365)
T KOG2391|consen 213 SAVREKLRRRREEEMERLQAEQE 235 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555444443
No 114
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.91 E-value=85 Score=29.45 Aligned_cols=53 Identities=15% Similarity=0.282 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCC-cChHhHHHHHHHHHHHHHHHHHHH
Q 024062 54 IKEATELGKKARELKKAADTLHQEERSGS-KGRKWRKNVKSVEKELLQLEEDVK 106 (273)
Q Consensus 54 ~~~~~~i~~~~~~l~e~~~~l~~~~~~~~-~~~k~rr~~~~l~~~~~~Le~~~~ 106 (273)
.+++..+..+.++|..+...++++..+-. ...+.+.++.+++.+...++++-+
T Consensus 44 ~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~ 97 (265)
T COG3883 44 QKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIV 97 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777888888888877776554322 234455677777777777776533
No 115
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=40.86 E-value=2.8e+02 Score=25.13 Aligned_cols=64 Identities=17% Similarity=0.281 Sum_probs=37.5
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC-cC--hHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 024062 48 ITRSQYIKEATELGKKARELKKAADTLHQEERSGS-KG--RKWRKNVKSVEKELLQLEEDVKLLEEM 111 (273)
Q Consensus 48 is~~~~~~~~~~i~~~~~~l~e~~~~l~~~~~~~~-~~--~k~rr~~~~l~~~~~~Le~~~~~le~~ 111 (273)
++.....++-.+++.|.+.+.+..+++++-.++.+ .. -+-.+++.+.+.+...++.+.+.+++.
T Consensus 125 ~~~~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~ 191 (262)
T PF14257_consen 125 ISSEDVTEQYVDLEARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQLKYLDDR 191 (262)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444444555556666666666665332222 11 234467777888888888877777765
No 116
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=40.81 E-value=54 Score=27.01 Aligned_cols=48 Identities=17% Similarity=0.295 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcChHhHHHHHHHHHHHH
Q 024062 52 QYIKEATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELL 99 (273)
Q Consensus 52 ~~~~~~~~i~~~~~~l~e~~~~l~~~~~~~~~~~k~rr~~~~l~~~~~ 99 (273)
.|.+...+|....++..+....++.+-...+.-++.|.+++.+.+...
T Consensus 78 ~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak~~r~~k~eyd~La~~I~ 125 (139)
T PF05615_consen 78 NYEQLNEEIEQEIEQAKKEIEELKEELEEAKRVRQNKEEYDALAKKIN 125 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555555555555555554433222223334444444444443
No 117
>PRK10722 hypothetical protein; Provisional
Probab=40.63 E-value=70 Score=29.70 Aligned_cols=12 Identities=17% Similarity=0.166 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 024062 90 NVKSVEKELLQL 101 (273)
Q Consensus 90 ~~~~l~~~~~~L 101 (273)
+++.|..-||.|
T Consensus 198 KLEnLTdIERqL 209 (247)
T PRK10722 198 KLENLTDIERQL 209 (247)
T ss_pred HHHHHHHHHHHh
Confidence 333333333333
No 118
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=40.61 E-value=1.4e+02 Score=25.90 Aligned_cols=25 Identities=24% Similarity=0.484 Sum_probs=15.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH
Q 024062 86 KWRKNVKSVEKELLQLEEDVKLLEE 110 (273)
Q Consensus 86 k~rr~~~~l~~~~~~Le~~~~~le~ 110 (273)
+...|+.++++|+..-|++.+.+++
T Consensus 158 ~~~~ei~~lk~el~~~~~~~~~Lkk 182 (192)
T PF05529_consen 158 KLSEEIEKLKKELEKKEKEIEALKK 182 (192)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777776666666555
No 119
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=39.92 E-value=1.6e+02 Score=22.18 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024062 88 RKNVKSVEKELLQLEEDVKLLE 109 (273)
Q Consensus 88 rr~~~~l~~~~~~Le~~~~~le 109 (273)
..+.+++.+++..+|++.|.-.
T Consensus 11 ~~d~~~i~~rLd~iEeKVEf~~ 32 (70)
T TIGR01149 11 PDEFNEVMKRLDEIEEKVEFVN 32 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555665555433
No 120
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=39.84 E-value=1.6e+02 Score=23.99 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 024062 89 KNVKSVEKELLQLEEDVKLLEEM 111 (273)
Q Consensus 89 r~~~~l~~~~~~Le~~~~~le~~ 111 (273)
.+.+.++.++..||++.+.|+.-
T Consensus 83 ~~~~~l~~rvd~Lerqv~~Lenk 105 (108)
T COG3937 83 SEMDELTERVDALERQVADLENK 105 (108)
T ss_pred chHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777654
No 121
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=39.64 E-value=2.2e+02 Score=23.70 Aligned_cols=32 Identities=16% Similarity=0.091 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHh
Q 024062 7 EYVVALATIVGSVLFSIFGGVGIACLPLGLIF 38 (273)
Q Consensus 7 ~f~i~~l~~iG~~lfv~y~gvGlaalPi~LI~ 38 (273)
+..+..+..++|.+..+..+......++....
T Consensus 130 i~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~ 161 (275)
T PF00664_consen 130 IFSLILLFFISWKLALILLIILPLLFLISFIF 161 (275)
T ss_dssp HHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhcccccccccccccchhhhhhHhhhhhh
Confidence 34455556666666665554444444444333
No 122
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=39.10 E-value=1.4e+02 Score=27.78 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024062 88 RKNVKSVEKELLQLEEDVKLLE 109 (273)
Q Consensus 88 rr~~~~l~~~~~~Le~~~~~le 109 (273)
.+.+++=++|.++||++-+++|
T Consensus 238 de~I~rEeeEIreLE~k~~~Lq 259 (259)
T PF08657_consen 238 DEDIRREEEEIRELERKKRELQ 259 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 3567777788888888877653
No 123
>PF06409 NPIP: Nuclear pore complex interacting protein (NPIP); InterPro: IPR009443 This family consists of a series of primate specific nuclear pore complex interacting protein (NPIP) sequences. The function of this family is unknown but is well conserved from African apes to humans [].
Probab=39.02 E-value=1.7e+02 Score=27.27 Aligned_cols=31 Identities=13% Similarity=0.141 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcccCcc
Q 024062 87 WRKNVKSVEKELLQLEEDVKLLEEMYPQGEK 117 (273)
Q Consensus 87 ~rr~~~~l~~~~~~Le~~~~~le~~y~~~~~ 117 (273)
|-+|+..+++.....++..++.|+.|+.+-.
T Consensus 153 ~mkei~tY~~~fQ~~Qel~~RaEdy~kckI~ 183 (265)
T PF06409_consen 153 AMKEIHTYKQMFQRMQELQQRAEDYYKCKIA 183 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 5568888888888888888888888776653
No 124
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=38.84 E-value=77 Score=27.27 Aligned_cols=56 Identities=11% Similarity=0.134 Sum_probs=34.3
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcChHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 024062 48 ITRSQYIKEATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEM 111 (273)
Q Consensus 48 is~~~~~~~~~~i~~~~~~l~e~~~~l~~~~~~~~~~~k~rr~~~~l~~~~~~Le~~~~~le~~ 111 (273)
+|..-|++.+.+++ .|.+ +++.....|-.|. .|++.....++.+.|+++.+.++-.
T Consensus 31 lT~~G~~~L~~El~----~L~~---~i~~Ar~~GDlsE-ak~~~~~~e~rI~~L~~~L~~A~Ii 86 (160)
T PRK06342 31 VTEAGLKALEDQLA----QARA---AYEAAQAIEDVNE-RRRQMARPLRDLRYLAARRRTAQLM 86 (160)
T ss_pred ECHHHHHHHHHHHH----HHHH---HHHHHHHCCChhH-HHHHHHHHHHHHHHHHHHHccCEEE
Confidence 77777777676666 5553 4444433444444 4556666777777777776665543
No 125
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=38.72 E-value=3.5e+02 Score=26.20 Aligned_cols=18 Identities=11% Similarity=0.158 Sum_probs=11.6
Q ss_pred hhhhhhhhhHHHHhhccc
Q 024062 25 GGVGIACLPLGLIFSFIR 42 (273)
Q Consensus 25 ~gvGlaalPi~LI~~f~~ 42 (273)
+..|.++.|+.....+.+
T Consensus 211 ~~aa~~a~P~~~~gkw~~ 228 (336)
T PF05055_consen 211 ALAAALAAPIGSVGKWCG 228 (336)
T ss_pred HHHHHHccchHHHhHHHH
Confidence 355677788877764444
No 126
>PLN02320 seryl-tRNA synthetase
Probab=38.57 E-value=1.6e+02 Score=30.03 Aligned_cols=55 Identities=20% Similarity=0.314 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc---CCcChHhHHHHHHHHHHHHHHHHHHHHHHH
Q 024062 56 EATELGKKARELKKAADTLHQEERS---GSKGRKWRKNVKSVEKELLQLEEDVKLLEE 110 (273)
Q Consensus 56 ~~~~i~~~~~~l~e~~~~l~~~~~~---~~~~~k~rr~~~~l~~~~~~Le~~~~~le~ 110 (273)
++.++..+.++++.+...+.++-.+ +..-.+-+.+.+.++++...||++.+.+++
T Consensus 101 ~~r~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~ 158 (502)
T PLN02320 101 NMLALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDLVKLTD 158 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666555555443221 101112233556666666666666655544
No 127
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=38.32 E-value=1.4e+02 Score=25.18 Aligned_cols=64 Identities=14% Similarity=0.118 Sum_probs=39.6
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC-cChHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 024062 48 ITRSQYIKEATELGKKARELKKAADTLHQEERSGS-KGRKWRKNVKSVEKELLQLEEDVKLLEEM 111 (273)
Q Consensus 48 is~~~~~~~~~~i~~~~~~l~e~~~~l~~~~~~~~-~~~k~rr~~~~l~~~~~~Le~~~~~le~~ 111 (273)
.+-+...+.+..+++......+.-..|+.+.+.-. .-.+|...++.|++..+.+++..+..++.
T Consensus 20 ~~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 20 FDYEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455566777777777766666666665443211 22456677777777777777766665553
No 128
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=38.09 E-value=4.8e+02 Score=27.12 Aligned_cols=47 Identities=13% Similarity=0.093 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCcChHhHHHHHHHHHHHHHHHHHHHHHH
Q 024062 56 EATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLE 109 (273)
Q Consensus 56 ~~~~i~~~~~~l~e~~~~l~~~~~~~~~~~k~rr~~~~l~~~~~~Le~~~~~le 109 (273)
...+......|.++-.+.++.-. ...++.+++++....+.+...+..
T Consensus 273 ~~~~~~~~~~e~l~g~~~I~~~~-------~e~~e~~~~~~~~~~l~~~~~~~~ 319 (659)
T TIGR00954 273 LEGEYRYVHSRLIMNSEEIAFYQ-------GNKVEKETVMSSFYRLVEHLNLII 319 (659)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhC-------CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555554321 223344445444444444444433
No 129
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=37.97 E-value=2.4e+02 Score=27.80 Aligned_cols=26 Identities=4% Similarity=0.052 Sum_probs=15.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHh
Q 024062 86 KWRKNVKSVEKELLQLEEDVKLLEEM 111 (273)
Q Consensus 86 k~rr~~~~l~~~~~~Le~~~~~le~~ 111 (273)
+...++..++|+....++.++.+...
T Consensus 352 ~~~~el~~L~Re~~~~~~~Y~~l~~r 377 (498)
T TIGR03007 352 EVEAELTQLNRDYEVNKSNYEQLLTR 377 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556777777776666555544443
No 130
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=37.93 E-value=65 Score=33.58 Aligned_cols=44 Identities=27% Similarity=0.350 Sum_probs=23.7
Q ss_pred HHHHhhcccCCCcccChHHHHHHHH----HHHHHHHHHHHHHHHHHhh
Q 024062 34 LGLIFSFIRRPKAVITRSQYIKEAT----ELGKKARELKKAADTLHQE 77 (273)
Q Consensus 34 i~LI~~f~~Rpk~~is~~~~~~~~~----~i~~~~~~l~e~~~~l~~~ 77 (273)
+++|++.++|+|..+.+.-=.++|. .++.+++.|..+.++|.++
T Consensus 486 LslIrDIRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~E 533 (604)
T KOG3863|consen 486 LSLIRDIRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRE 533 (604)
T ss_pred HHHhhccccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999987565443322221 2334444444444444433
No 131
>PRK11546 zraP zinc resistance protein; Provisional
Probab=37.84 E-value=2e+02 Score=24.53 Aligned_cols=19 Identities=21% Similarity=0.307 Sum_probs=11.2
Q ss_pred HhHHHHHHHHHHHHHHHHH
Q 024062 86 KWRKNVKSVEKELLQLEED 104 (273)
Q Consensus 86 k~rr~~~~l~~~~~~Le~~ 104 (273)
-|..+++++.+|..+|..+
T Consensus 86 pD~~kI~aL~kEI~~Lr~k 104 (143)
T PRK11546 86 PDSSKINAVAKEMENLRQS 104 (143)
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 3555666666666666543
No 132
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=37.83 E-value=2.6e+02 Score=23.86 Aligned_cols=26 Identities=31% Similarity=0.470 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024062 87 WRKNVKSVEKELLQLEEDVKLLEEMY 112 (273)
Q Consensus 87 ~rr~~~~l~~~~~~Le~~~~~le~~y 112 (273)
.+.++..+++++..|++..+.++...
T Consensus 150 ~~~~~~~l~~~i~~l~rk~~~l~~~i 175 (177)
T PF13870_consen 150 TKEEVEELRKEIKELERKVEILEMRI 175 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34577789999999999999888764
No 133
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=37.80 E-value=5e+02 Score=27.18 Aligned_cols=22 Identities=14% Similarity=0.267 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh
Q 024062 8 YVVALATIVGSVLFSIFGGVGI 29 (273)
Q Consensus 8 f~i~~l~~iG~~lfv~y~gvGl 29 (273)
.+..++.++|.+.++++-+..+
T Consensus 282 ~l~~~~~~i~~~~~l~~~s~~l 303 (711)
T TIGR00958 282 LLRNLVMLLGLLGFMLWLSPRL 303 (711)
T ss_pred HHHHHHHHHHHHHHHHHHhHHH
Confidence 3444455555555544444443
No 134
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=37.78 E-value=98 Score=31.05 Aligned_cols=54 Identities=13% Similarity=0.305 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCC---cChHhHHHHHHHHHHHHHHHHHHHHHH
Q 024062 56 EATELGKKARELKKAADTLHQEERSGS---KGRKWRKNVKSVEKELLQLEEDVKLLE 109 (273)
Q Consensus 56 ~~~~i~~~~~~l~e~~~~l~~~~~~~~---~~~k~rr~~~~l~~~~~~Le~~~~~le 109 (273)
+...+++|.++|.++.+..+++-++.. .....+++.+.+.++...|.++.+.++
T Consensus 164 Q~~L~~~Rl~~L~~qi~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~ 220 (475)
T PF10359_consen 164 QIELIQERLDELEEQIEKHEEKLGELELNPDDPELKSDIEELERHISSLKERIEFLE 220 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566667777777766665433221 233344444444444444444444433
No 135
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=37.70 E-value=42 Score=23.31 Aligned_cols=21 Identities=14% Similarity=0.393 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 024062 92 KSVEKELLQLEEDVKLLEEMY 112 (273)
Q Consensus 92 ~~l~~~~~~Le~~~~~le~~y 112 (273)
+.|++.+..||.+.++|+.++
T Consensus 2 ~aLrqQv~aL~~qv~~Lq~~f 22 (46)
T PF09006_consen 2 NALRQQVEALQGQVQRLQAAF 22 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777777663
No 136
>PF14728 PHTB1_C: PTHB1 C-terminus
Probab=37.36 E-value=3.7e+02 Score=26.37 Aligned_cols=50 Identities=20% Similarity=0.292 Sum_probs=31.5
Q ss_pred hhHHHHhhcccCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCc
Q 024062 32 LPLGLIFSFIRRPKAVITRSQYIKEATELGKKARELKKAADTLHQEERSGSK 83 (273)
Q Consensus 32 lPi~LI~~f~~Rpk~~is~~~~~~~~~~i~~~~~~l~e~~~~l~~~~~~~~~ 83 (273)
+|++-+.+-+.. +.=.+.+.++.+.++++++.+.+.++|++-...++...
T Consensus 197 lPl~~~~~~id~--H~~lr~~~~~~~~~L~~~a~QfRaIQrrlL~r~kd~~p 246 (377)
T PF14728_consen 197 LPLQEYFEIIDQ--HFELRQELKELEEELDERAQQFRAIQRRLLTRFKDKNP 246 (377)
T ss_pred CcHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 577666654331 10123345667788888888888888888876654443
No 137
>PF11262 Tho2: Transcription factor/nuclear export subunit protein 2; InterPro: IPR021418 THO and TREX form a eukaryotic complex which functions in messenger ribonucleoprotein metabolism and plays a role in preventing the transcription-associated genetic instability [],[]. Tho2, along with four other subunits forms THO []. This entry represents a conserved domain found towards the C terminus of these proteins.
Probab=37.33 E-value=1e+02 Score=28.96 Aligned_cols=18 Identities=17% Similarity=0.082 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 024062 186 FCFYLLLAVIAGAMMLGL 203 (273)
Q Consensus 186 ~~~Yll~cs~~G~~~~Gi 203 (273)
+...+++||-.=...+|+
T Consensus 154 l~~~ifscTe~EA~nlG~ 171 (298)
T PF11262_consen 154 LSPLIFSCTENEAENLGR 171 (298)
T ss_pred hhhHHhccCHHHHHHHHH
Confidence 334566777777777774
No 138
>PF08278 DnaG_DnaB_bind: DNA primase DnaG DnaB-binding ; InterPro: IPR013173 Eubacterial DnaG primases interact with several factors to form the replisome. One of these factors is DnaB, a helicase. This domain has been demonstrated to be responsible for the interaction between DnaG and DnaB []. This domain has a multi-helical structure that forms an orthogonal bundle [].; GO: 0003896 DNA primase activity, 0006269 DNA replication, synthesis of RNA primer; PDB: 2HAJ_A 1T3W_B.
Probab=37.01 E-value=1.1e+02 Score=24.25 Aligned_cols=27 Identities=11% Similarity=0.326 Sum_probs=11.9
Q ss_pred HHHHHHHHhhhccCCcChHhHHHHHHH
Q 024062 68 KKAADTLHQEERSGSKGRKWRKNVKSV 94 (273)
Q Consensus 68 ~e~~~~l~~~~~~~~~~~k~rr~~~~l 94 (273)
.++.++|+.+.+.+..+..+|++++.+
T Consensus 100 ~~~i~~L~~k~~~~~Lt~eEk~el~~L 126 (127)
T PF08278_consen 100 ERRIEELKAKPRRGGLTDEEKQELRRL 126 (127)
T ss_dssp HHHHHHHHHHHTTT---HHHHHHHHHH
T ss_pred HHHHHHHHHhhccCCcCHHHHHHHHHh
Confidence 344444555544444555555555543
No 139
>PF15361 RIC3: Resistance to inhibitors of cholinesterase homologue 3
Probab=36.83 E-value=1e+02 Score=26.28 Aligned_cols=22 Identities=14% Similarity=0.200 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 024062 87 WRKNVKSVEKELLQLEEDVKLL 108 (273)
Q Consensus 87 ~rr~~~~l~~~~~~Le~~~~~l 108 (273)
...|+++|++.+++=|+.-+++
T Consensus 129 ~~~eL~qLq~rL~qTE~~m~ki 150 (152)
T PF15361_consen 129 TDYELAQLQERLAQTERAMEKI 150 (152)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3457777777766666655543
No 140
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=36.72 E-value=1.2e+02 Score=27.47 Aligned_cols=22 Identities=18% Similarity=0.169 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 024062 57 ATELGKKARELKKAADTLHQEE 78 (273)
Q Consensus 57 ~~~i~~~~~~l~e~~~~l~~~~ 78 (273)
+.+..++.++.-+..+.++.++
T Consensus 37 ~~~sQ~~id~~~~e~~~L~~e~ 58 (251)
T PF11932_consen 37 AQQSQKRIDQWDDEKQELLAEY 58 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444
No 141
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=36.72 E-value=2.2e+02 Score=24.85 Aligned_cols=21 Identities=24% Similarity=0.359 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024062 89 KNVKSVEKELLQLEEDVKLLE 109 (273)
Q Consensus 89 r~~~~l~~~~~~Le~~~~~le 109 (273)
+++..++++...|+.+.+.++
T Consensus 111 ~e~~~l~~~~e~Le~e~~~L~ 131 (161)
T TIGR02894 111 NQNESLQKRNEELEKELEKLR 131 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 142
>KOG4136 consensus Predicted mitochondrial cholesterol transporter [Signal transduction mechanisms; Lipid transport and metabolism]
Probab=36.61 E-value=3.1e+02 Score=24.48 Aligned_cols=72 Identities=18% Similarity=0.326 Sum_probs=39.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhheeeeecccCCChhhhHHHHHHHHHHHHHHHHHHHHHhHhhhhhHh
Q 024062 173 DLWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQFCSTAFGYYAQAT 252 (273)
Q Consensus 173 ~~fpll~~i~~~~~~~Yll~cs~~G~~~~GiR~~~~~i~pmr~~~T~~nslLfn~~Llll~s~av~qf~~~aF~~Ya~~t 252 (273)
+.|| +..+++++++-|...|-+.+ |+++++ |.|+ ||..|+++..==.=..|+-..-+ +|-..+
T Consensus 62 d~fp-~~li~fsl~~~~vy~~~l~~-------fPfv~l-------~sp~-Fllsc~~vV~NH~L~fr~f~~e~-~y~pFa 124 (198)
T KOG4136|consen 62 DGFP-FSLILFSLFIQYVYYGLLDT-------FPFVSL-------TSPY-FLLSCILVVVNHFLWFRFFFSES-AYYPFA 124 (198)
T ss_pred cCCc-HHHHHHHHHHHHHHHHHhcc-------Cceeee-------cCcH-HHHHHHHHHHHHHHHHHHHhhhc-ccccHH
Confidence 4467 57888888888877665543 333333 3333 55555555443333333333222 455577
Q ss_pred hHHHHHHHh
Q 024062 253 AAQEIFGHT 261 (273)
Q Consensus 253 ~i~~~f~~~ 261 (273)
.+.+.||.-
T Consensus 125 eV~syf~ic 133 (198)
T KOG4136|consen 125 EVASYFGIC 133 (198)
T ss_pred HHHHHHHHH
Confidence 777777653
No 143
>PHA03048 IMV membrane protein; Provisional
Probab=36.57 E-value=40 Score=26.67 Aligned_cols=23 Identities=17% Similarity=0.548 Sum_probs=18.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHh
Q 024062 3 TTFPEYVVALATIVGSVLFSIFG 25 (273)
Q Consensus 3 vsf~~f~i~~l~~iG~~lfv~y~ 25 (273)
.|...|++|.+.++|.++|.-|+
T Consensus 46 lsii~FIlgivl~lG~~ifsmy~ 68 (93)
T PHA03048 46 LSGIAFVLGIVMTIGMLIYSMWG 68 (93)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 46678999999999998766554
No 144
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=36.42 E-value=1.4e+02 Score=30.36 Aligned_cols=52 Identities=10% Similarity=0.088 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccC----CcChHhHHHHHHHHHHHHHHHHHHHH
Q 024062 56 EATELGKKARELKKAADTLHQEERSG----SKGRKWRKNVKSVEKELLQLEEDVKL 107 (273)
Q Consensus 56 ~~~~i~~~~~~l~e~~~~l~~~~~~~----~~~~k~rr~~~~l~~~~~~Le~~~~~ 107 (273)
+++.+++.-++..|..++|+..+.+. ++..+..+++++++.|...|+++.+.
T Consensus 67 nqSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a 122 (475)
T PRK13729 67 RQHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKA 122 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 55555554445555555555432221 22334556777777777777777643
No 145
>PF11917 DUF3435: Protein of unknown function (DUF3435); InterPro: IPR021842 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 435 to 791 amino acids in length. This family is related to PF00589 from PFAM suggesting it may be an integrase enzyme.
Probab=36.14 E-value=1.1e+02 Score=29.85 Aligned_cols=12 Identities=33% Similarity=0.490 Sum_probs=8.1
Q ss_pred ccCCCcccChHHH
Q 024062 41 IRRPKAVITRSQY 53 (273)
Q Consensus 41 ~~Rpk~~is~~~~ 53 (273)
++||+. +|+.|-
T Consensus 270 p~~P~~-Lt~~q~ 281 (418)
T PF11917_consen 270 PRAPRE-LTDEQK 281 (418)
T ss_pred CCCCcc-CCHHHH
Confidence 477877 776654
No 146
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=36.13 E-value=1.2e+02 Score=30.19 Aligned_cols=25 Identities=28% Similarity=0.522 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Q 024062 89 KNVKSVEKELLQLEEDVKLLEEMYP 113 (273)
Q Consensus 89 r~~~~l~~~~~~Le~~~~~le~~y~ 113 (273)
+++..++.+...||++..++|..|.
T Consensus 259 ~~lq~lEt~q~~leqeva~le~yyQ 283 (499)
T COG4372 259 RQLQRLETAQARLEQEVAQLEAYYQ 283 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666666666543
No 147
>PRK08307 stage III sporulation protein SpoAB; Provisional
Probab=35.77 E-value=2.2e+02 Score=24.50 Aligned_cols=43 Identities=23% Similarity=0.224 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCccccchhhhhHHHHHHHHHHHHHHHH
Q 024062 90 NVKSVEKELLQLEEDVKLLEEMYPQGEKAETSWALTVLGYLAKLVLGILGFI 141 (273)
Q Consensus 90 ~~~~l~~~~~~Le~~~~~le~~y~~~~~~~~~~~~~~l~~~~kLl~Gii~ll 141 (273)
+.+.++-....|+++.+.+++..++++ -+.+++-++.|++..+
T Consensus 126 Q~k~i~L~~e~L~~~~~~a~~~~~k~~---------Kmy~~LGvl~Gl~lvI 168 (171)
T PRK08307 126 QQKHIRLALEHLEREEEEAEEEQKKNE---------KMYKYLGFLAGLLIVI 168 (171)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC---------cHHHHHHHHHHHHHHH
Confidence 344555566677777777777633443 2334555566655443
No 148
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=35.36 E-value=2e+02 Score=21.96 Aligned_cols=27 Identities=11% Similarity=0.370 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 024062 87 WRKNVKSVEKELLQLEEDVKLLEEMYP 113 (273)
Q Consensus 87 ~rr~~~~l~~~~~~Le~~~~~le~~y~ 113 (273)
.-.+++.+++.++.||..+..++..|.
T Consensus 37 Qi~Em~~ir~~v~eLE~~h~kmK~~YE 63 (79)
T PF08581_consen 37 QIQEMQQIRQKVYELEQAHRKMKQQYE 63 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446899999999999999999888763
No 149
>TIGR02833 spore_III_AB stage III sporulation protein AB. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage III sporulation protein AB.
Probab=35.14 E-value=2.3e+02 Score=24.36 Aligned_cols=43 Identities=16% Similarity=0.232 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCccccchhhhhHHHHHHHHHHHHHHHH
Q 024062 90 NVKSVEKELLQLEEDVKLLEEMYPQGEKAETSWALTVLGYLAKLVLGILGFI 141 (273)
Q Consensus 90 ~~~~l~~~~~~Le~~~~~le~~y~~~~~~~~~~~~~~l~~~~kLl~Gii~ll 141 (273)
+.+.++-....||+..+.+++..++++ -+.+++-++.|++..+
T Consensus 125 Q~k~i~L~~~~L~~~~~~a~~~~~k~~---------Kmy~~LGvl~Gl~lvI 167 (170)
T TIGR02833 125 QQKHINLTLEHLERQLTEAEDEQKKNE---------KMYRYLGVLVGLMIVL 167 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc---------cHHHHHHHHHHHHHHH
Confidence 344555566667777676666633333 2335555666655443
No 150
>PF06694 Plant_NMP1: Plant nuclear matrix protein 1 (NMP1); InterPro: IPR010604 This family consists of several plant specific nuclear matrix protein 1 (NMP1) sequences. Nuclear Matrix Protein 1 is a ubiquitously expressed 36 kDa protein, which has no homologues in animals and fungi, but is highly conserved among flowering and non-flowering plants. NMP1 is located both in the cytoplasm and nucleus and that the nuclear fraction is associated with the nuclear matrix. NMP1 is a candidate for a plant-specific structural protein with a function both in the nucleus and cytoplasm [].
Probab=34.80 E-value=3.8e+02 Score=25.84 Aligned_cols=89 Identities=15% Similarity=0.196 Sum_probs=54.3
Q ss_pred hhhhhhHHHHhhcccCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcChHhHHHHHHHHHHHHHHHHHHHH
Q 024062 28 GIACLPLGLIFSFIRRPKAVITRSQYIKEATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKL 107 (273)
Q Consensus 28 GlaalPi~LI~~f~~Rpk~~is~~~~~~~~~~i~~~~~~l~e~~~~l~~~~~~~~~~~k~rr~~~~l~~~~~~Le~~~~~ 107 (273)
+...+|-|. + .-+.+++ =+.+++.+..+++.++.+.+.++-..|+.+.... -...+-+...+++.++.++.+-.+-
T Consensus 151 ~ckLFP~DV-q-i~S~~~l-PD~seLe~~~s~~sk~Lq~lqq~v~~Lask~~y~-pd~~~~e~~~~Lr~~L~tflq~~~~ 226 (325)
T PF06694_consen 151 ECKLFPPDV-Q-IQSIYPL-PDVSELEKKASELSKQLQSLQQQVAELASKHPYN-PDEEYVEKESQLRLELETFLQTAAG 226 (325)
T ss_pred hcCcCCHHH-h-hccCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-cchhhHHHHHHHHHHHHHHHHHHHH
Confidence 566778884 3 2233333 3555555555555555555555555666555421 1223335566688899999988888
Q ss_pred HHHhcccCccccchhh
Q 024062 108 LEEMYPQGEKAETSWA 123 (273)
Q Consensus 108 le~~y~~~~~~~~~~~ 123 (273)
....|.+.-. .|+
T Consensus 227 F~~~Y~~EIr---pWc 239 (325)
T PF06694_consen 227 FNHCYEKEIR---PWC 239 (325)
T ss_pred HHHHHHhcch---hhh
Confidence 8888887765 565
No 151
>KOG4538 consensus Predicted coiled-coil protein [General function prediction only]
Probab=34.64 E-value=1.5e+02 Score=24.47 Aligned_cols=21 Identities=19% Similarity=0.363 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 024062 57 ATELGKKARELKKAADTLHQE 77 (273)
Q Consensus 57 ~~~i~~~~~~l~e~~~~l~~~ 77 (273)
++++...-+-..+.++.|+.+
T Consensus 50 Km~lr~e~~~vK~~~~~i~ek 70 (130)
T KOG4538|consen 50 KMELRAEKDMVKRVQDNIREK 70 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444555666666544
No 152
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=34.59 E-value=2.9e+02 Score=23.53 Aligned_cols=22 Identities=9% Similarity=0.165 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhH
Q 024062 183 FAFFCFYLLLAVIAGAMMLGLR 204 (273)
Q Consensus 183 ~~~~~~Yll~cs~~G~~~~GiR 204 (273)
.|++.....+-..+...+.-.|
T Consensus 149 lGlll~~~~~~l~k~~~~~~~~ 170 (181)
T PF08006_consen 149 LGLLLIVITFYLTKLFIKLTVR 170 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444
No 153
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=34.56 E-value=45 Score=26.39 Aligned_cols=23 Identities=22% Similarity=0.615 Sum_probs=18.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHh
Q 024062 3 TTFPEYVVALATIVGSVLFSIFG 25 (273)
Q Consensus 3 vsf~~f~i~~l~~iG~~lfv~y~ 25 (273)
.|...|++|++.++|.++|..||
T Consensus 47 lSii~FI~giil~lG~~i~s~yg 69 (92)
T PF05767_consen 47 LSIICFILGIILTLGIVIFSMYG 69 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 46778999999999998776654
No 154
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=34.55 E-value=49 Score=19.74 Aligned_cols=18 Identities=11% Similarity=0.401 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 024062 89 KNVKSVEKELLQLEEDVK 106 (273)
Q Consensus 89 r~~~~l~~~~~~Le~~~~ 106 (273)
++++++++....||++..
T Consensus 1 ~E~~rlr~rI~dLer~L~ 18 (23)
T PF04508_consen 1 REMNRLRNRISDLERQLS 18 (23)
T ss_pred ChHHHHHHHHHHHHHHHH
Confidence 367888888888887643
No 155
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=34.49 E-value=91 Score=29.99 Aligned_cols=25 Identities=16% Similarity=0.352 Sum_probs=13.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH
Q 024062 86 KWRKNVKSVEKELLQLEEDVKLLEE 110 (273)
Q Consensus 86 k~rr~~~~l~~~~~~Le~~~~~le~ 110 (273)
|-|+.+.+|++|..++.-+.-.++.
T Consensus 339 kIkqavsKLk~et~~mnv~igv~eh 363 (384)
T KOG0972|consen 339 KIKQAVSKLKEETQTMNVQIGVFEH 363 (384)
T ss_pred HHHHHHHHHHHHHHhhhhheehhhH
Confidence 4455566666665555554443433
No 156
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=34.49 E-value=88 Score=31.98 Aligned_cols=23 Identities=17% Similarity=0.339 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHhcccCc
Q 024062 94 VEKELLQLEEDVKLLEEMYPQGE 116 (273)
Q Consensus 94 l~~~~~~Le~~~~~le~~y~~~~ 116 (273)
++.++..|..|..+++..|+...
T Consensus 466 Le~~~~~l~~Rl~~i~~e~~~~~ 488 (536)
T KOG0500|consen 466 LENEVVLLQLRLARILDEYHSSQ 488 (536)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhh
Confidence 67778888778777777766444
No 157
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=34.45 E-value=1.1e+02 Score=28.39 Aligned_cols=62 Identities=11% Similarity=0.206 Sum_probs=35.1
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcChHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 024062 48 ITRSQYIKEATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEM 111 (273)
Q Consensus 48 is~~~~~~~~~~i~~~~~~l~e~~~~l~~~~~~~~~~~k~rr~~~~l~~~~~~Le~~~~~le~~ 111 (273)
.+.++|.+++..-+.-+++=++..++.+.+-. .+..--.+|-+.|+.++.+|+++...+...
T Consensus 190 ~~~~~y~err~rNN~A~~kSR~~~k~~~~e~~--~r~~~leken~~lr~~v~~l~~el~~~~~~ 251 (269)
T KOG3119|consen 190 KKDPEYKERRRRNNEAVRKSRDKRKQKEDEMA--HRVAELEKENEALRTQVEQLKKELATLRRL 251 (269)
T ss_pred cCCHHHHHHHHhhhHHHHHhhhhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667877666666555555555555543211 001112356667777777777776666555
No 158
>PLN03086 PRLI-interacting factor K; Provisional
Probab=34.34 E-value=1.2e+02 Score=31.51 Aligned_cols=14 Identities=14% Similarity=0.214 Sum_probs=6.4
Q ss_pred HHHHHHHhcccCcc
Q 024062 104 DVKLLEEMYPQGEK 117 (273)
Q Consensus 104 ~~~~le~~y~~~~~ 117 (273)
..++.++....++|
T Consensus 62 ~~~~~~~~~~~~~g 75 (567)
T PLN03086 62 ADQQMQESLQAGRG 75 (567)
T ss_pred HHHHHHHHHHcCCC
Confidence 34445555434443
No 159
>PF03715 Noc2: Noc2p family; InterPro: IPR005343 This is a small family of mainly hypothetical proteins of unknown function.
Probab=34.19 E-value=1e+02 Score=29.06 Aligned_cols=63 Identities=13% Similarity=0.131 Sum_probs=35.9
Q ss_pred hhhhHHHHhhcccCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcChHhHHHHHHHHHHHH
Q 024062 30 ACLPLGLIFSFIRRPKAVITRSQYIKEATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELL 99 (273)
Q Consensus 30 aalPi~LI~~f~~Rpk~~is~~~~~~~~~~i~~~~~~l~e~~~~l~~~~~~~~~~~k~rr~~~~l~~~~~ 99 (273)
+.-|+--+|.|....| .+. -+.++..=.+++.|..+-++++++.-.-+.+|..+++.++++++
T Consensus 223 ~~pii~~LKr~~K~~k----~~~---~~~~ik~Li~kiee~~~~I~~kR~~v~f~p~d~~~V~~fe~~~~ 285 (299)
T PF03715_consen 223 ALPIIVQLKRFLKSCK----NAK---FKRQIKQLIDKIEENSKFIESKRSKVDFSPKDQAQVEAFESELK 285 (299)
T ss_pred HHHHHHHHHHHHHHcc----cHH---HHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCHHHHHHHHHhcc
Confidence 3344455666655332 222 33344444445556666666666555567888888888776653
No 160
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=34.13 E-value=2.3e+02 Score=23.93 Aligned_cols=26 Identities=27% Similarity=0.481 Sum_probs=21.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHh
Q 024062 86 KWRKNVKSVEKELLQLEEDVKLLEEM 111 (273)
Q Consensus 86 k~rr~~~~l~~~~~~Le~~~~~le~~ 111 (273)
.-+.++..++++...|+.+.+.+...
T Consensus 113 el~~~i~~l~~e~~~l~~kL~~l~~~ 138 (169)
T PF07106_consen 113 ELREEIEELEEEIEELEEKLEKLRSG 138 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34568889999999999998888875
No 161
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=34.02 E-value=2.4e+02 Score=24.10 Aligned_cols=43 Identities=23% Similarity=0.142 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCccccchhhhhHHHHHHHHHHHHHHHH
Q 024062 90 NVKSVEKELLQLEEDVKLLEEMYPQGEKAETSWALTVLGYLAKLVLGILGFI 141 (273)
Q Consensus 90 ~~~~l~~~~~~Le~~~~~le~~y~~~~~~~~~~~~~~l~~~~kLl~Gii~ll 141 (273)
+.+.++--...|++..+..++..++.+ -+.+++-++.|++..+
T Consensus 125 Q~k~i~l~~~~L~~~~~~a~~~~~~~~---------Klyr~LGvl~G~~lvI 167 (170)
T PF09548_consen 125 QEKHIELYLEQLEQQLEEAREEAKKKG---------KLYRSLGVLGGLFLVI 167 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc---------cHHHHHHHHHHHHHHH
Confidence 344455555666666666666533333 2335566666665443
No 162
>KOG4050 consensus Glutamate transporter EAAC1-interacting protein GTRAP3-18 [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=33.37 E-value=98 Score=27.23 Aligned_cols=37 Identities=38% Similarity=0.607 Sum_probs=30.7
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHhhhhhhh----hhHHHHh
Q 024062 2 RTTFPEYVVALATIVGSVLFSIFGGVGIAC----LPLGLIF 38 (273)
Q Consensus 2 ~vsf~~f~i~~l~~iG~~lfv~y~gvGlaa----lPi~LI~ 38 (273)
|-+-|.+++|-....|+++..+|+|+=..+ +|+.|+.
T Consensus 105 r~~hp~~~l~gvllv~yfli~v~~~vlv~~F~il~Pv~L~l 145 (188)
T KOG4050|consen 105 RTDHPLVTLAGVLLVGYFLISVFGGVLVFAFAILFPVLLVL 145 (188)
T ss_pred hhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456688999999999999999999997754 5777765
No 163
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=33.32 E-value=85 Score=26.86 Aligned_cols=49 Identities=6% Similarity=0.210 Sum_probs=22.3
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcChHhHHHHHHHHH
Q 024062 48 ITRSQYIKEATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEK 96 (273)
Q Consensus 48 is~~~~~~~~~~i~~~~~~l~e~~~~l~~~~~~~~~~~k~rr~~~~l~~ 96 (273)
+|+.++.++-....++.++-.+..+.-+++.....++.+.+++++++++
T Consensus 118 iss~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~l~~lrr 166 (166)
T PF05991_consen 118 ISSEEFLRELKAAKREIRKEARERSSKKKKKLDDRLSPEELEKLEKLRR 166 (166)
T ss_pred EcHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCCCHHHHHHHHHHhC
Confidence 6777765544333333322111111112222334466777777776653
No 164
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=33.30 E-value=2.1e+02 Score=23.26 Aligned_cols=65 Identities=12% Similarity=0.183 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCC---cChHh---HHHHHHHHHHHHHHHHHHHHHHHhcccCc
Q 024062 52 QYIKEATELGKKARELKKAADTLHQEERSGS---KGRKW---RKNVKSVEKELLQLEEDVKLLEEMYPQGE 116 (273)
Q Consensus 52 ~~~~~~~~i~~~~~~l~e~~~~l~~~~~~~~---~~~k~---rr~~~~l~~~~~~Le~~~~~le~~y~~~~ 116 (273)
++.+...++.+.+.++.+.-+.|+....... .+..+ +...+++.++....-.++..++..|+...
T Consensus 45 ~l~~~~~~~~~~~~~ik~~lk~l~~~~~~~~~~~~s~~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~ 115 (151)
T cd00179 45 ELESLVQEIKKLAKEIKGKLKELEESNEQNEALNGSSVDRIRKTQHSGLSKKFVEVMTEFNKAQRKYRERY 115 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555566666666666666654322111 11112 23555666666666666666666654433
No 165
>PF09925 DUF2157: Predicted membrane protein (DUF2157); InterPro: IPR018677 This family of various hypothetical prokaryotic proteins has no known function.
Probab=33.15 E-value=2.8e+02 Score=22.87 Aligned_cols=83 Identities=16% Similarity=0.151 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhee
Q 024062 130 LAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFIT 209 (273)
Q Consensus 130 ~~kLl~Gii~lllSi~w~i~iil~~i~k~~~~~fLN~~fi~l~~~fpll~~i~~~~~~~Yll~cs~~G~~~~GiR~~~~~ 209 (273)
..-..+|.+++..++++++ -++.++. | +..=+++...++..+.+.|.....
T Consensus 34 ~~l~~lGall~~~gii~fv---A~nW~~i-----------------~--~~~k~~~~~~~~~~~~~~~~~~~~------- 84 (145)
T PF09925_consen 34 RILLYLGALLLGLGIILFV---AANWDDI-----------------P--RLAKLGLLLALLLLSYVGGFWLWR------- 84 (145)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHc-----------------c--HHHHHHHHHHHHHHHHHHHHHHHh-------
Confidence 3555667777777776654 3444441 2 233444444444444444433211
Q ss_pred eeecccCCChhhhHHHHHHHHHHHHHHHHHHHHHhHhhh
Q 024062 210 IHPMKWGATLMNSFLFNVGLILLCSISVIQFCSTAFGYY 248 (273)
Q Consensus 210 i~pmr~~~T~~nslLfn~~Llll~s~av~qf~~~aF~~Y 248 (273)
|++++...++++-.+++.-.+++++ .|.|+.=
T Consensus 85 ----~~~~~~~~~l~~l~~~l~ga~iali---gQ~y~~~ 116 (145)
T PF09925_consen 85 ----RRSPRLAEALLLLGAVLFGALIALI---GQIYQTG 116 (145)
T ss_pred ----ccCcHHHHHHHHHHHHHHHHHHHHH---HhHhcCC
Confidence 7788888888888877766666665 3455433
No 166
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=33.08 E-value=2.2e+02 Score=21.73 Aligned_cols=17 Identities=18% Similarity=0.430 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024062 132 KLVLGILGFIVSVAWVA 148 (273)
Q Consensus 132 kLl~Gii~lllSi~w~i 148 (273)
.+.+|+.+++..++|++
T Consensus 72 li~~~~~~f~~~v~yI~ 88 (92)
T PF03908_consen 72 LIFFAFLFFLLVVLYIL 88 (92)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34577888888888876
No 167
>PRK11637 AmiB activator; Provisional
Probab=33.03 E-value=1.4e+02 Score=29.18 Aligned_cols=15 Identities=7% Similarity=0.217 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHH
Q 024062 90 NVKSVEKELLQLEED 104 (273)
Q Consensus 90 ~~~~l~~~~~~Le~~ 104 (273)
++..+++++..|++.
T Consensus 234 ~l~~l~~~~~~L~~~ 248 (428)
T PRK11637 234 QLSELRANESRLRDS 248 (428)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444443
No 168
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=32.96 E-value=2.3e+02 Score=21.94 Aligned_cols=58 Identities=31% Similarity=0.477 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh----ccCCcChHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 024062 54 IKEATELGKKARELKKAADTLHQEE----RSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEM 111 (273)
Q Consensus 54 ~~~~~~i~~~~~~l~e~~~~l~~~~----~~~~~~~k~rr~~~~l~~~~~~Le~~~~~le~~ 111 (273)
.+++.++..+.++++.+...+.++- +.|.-...-+.+...++.+...+|.+.+.+++.
T Consensus 35 d~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~ 96 (108)
T PF02403_consen 35 DQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEE 96 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355666666667776666665422 222222344557777777777777777776665
No 169
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=32.62 E-value=1.2e+02 Score=28.97 Aligned_cols=24 Identities=25% Similarity=0.232 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 024062 87 WRKNVKSVEKELLQLEEDVKLLEE 110 (273)
Q Consensus 87 ~rr~~~~l~~~~~~Le~~~~~le~ 110 (273)
.|.|...+.-|+..||++.++|.+
T Consensus 246 kRae~E~l~ge~~~Le~rN~~LK~ 269 (294)
T KOG4571|consen 246 KRAEKEALLGELEGLEKRNEELKD 269 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555544
No 170
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=32.52 E-value=2.6e+02 Score=27.64 Aligned_cols=21 Identities=33% Similarity=0.534 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024062 90 NVKSVEKELLQLEEDVKLLEE 110 (273)
Q Consensus 90 ~~~~l~~~~~~Le~~~~~le~ 110 (273)
+.+.++++...||+..+.+++
T Consensus 77 ~~~~l~~~~~~~~~~~~~~~~ 97 (418)
T TIGR00414 77 ELKELKEELTELSAALKALEA 97 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666655555444
No 171
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=32.41 E-value=1.5e+02 Score=26.07 Aligned_cols=22 Identities=23% Similarity=0.493 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024062 89 KNVKSVEKELLQLEEDVKLLEE 110 (273)
Q Consensus 89 r~~~~l~~~~~~Le~~~~~le~ 110 (273)
++++.++.+...|+.+.+....
T Consensus 110 ~~l~~l~~~~~~l~~el~~~~~ 131 (188)
T PF03962_consen 110 EELEELKKELKELKKELEKYSE 131 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3666677777777666664433
No 172
>PF13268 DUF4059: Protein of unknown function (DUF4059)
Probab=32.29 E-value=2.1e+02 Score=21.74 Aligned_cols=25 Identities=20% Similarity=0.530 Sum_probs=22.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHh
Q 024062 220 MNSFLFNVGLILLCSISVIQFCSTA 244 (273)
Q Consensus 220 ~nslLfn~~Llll~s~av~qf~~~a 244 (273)
-||+|+-..++.+.+.++.-|...+
T Consensus 43 RQa~LyD~lmi~ImtIPILSFA~m~ 67 (72)
T PF13268_consen 43 RQAFLYDMLMIAIMTIPILSFAFMG 67 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999887654
No 173
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=32.27 E-value=75 Score=29.60 Aligned_cols=59 Identities=20% Similarity=0.303 Sum_probs=0.0
Q ss_pred cccChHHHHHHHHHHHHHHHHHHHHHHHHHh--hhccCCcChHhHH--HHHHHHHHHHHHHHHHHHHH
Q 024062 46 AVITRSQYIKEATELGKKARELKKAADTLHQ--EERSGSKGRKWRK--NVKSVEKELLQLEEDVKLLE 109 (273)
Q Consensus 46 ~~is~~~~~~~~~~i~~~~~~l~e~~~~l~~--~~~~~~~~~k~rr--~~~~l~~~~~~Le~~~~~le 109 (273)
+ +.+++=+..+..++ .|-...+..++ |.|-...+.+||+ .+.++.++++.|+++.++|.
T Consensus 48 ~-~aas~~~rKr~RL~----HLS~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~ 110 (292)
T KOG4005|consen 48 N-MAASQPKRKRRRLD----HLSWEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQ 110 (292)
T ss_pred c-ccccchHHHHHhhc----ccCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
No 174
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=31.87 E-value=90 Score=32.21 Aligned_cols=43 Identities=30% Similarity=0.352 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHh-hhc--cCCcChHhHHHHHHHHHHHHHHHH
Q 024062 59 ELGKKARELKKAADTLHQ-EER--SGSKGRKWRKNVKSVEKELLQLEE 103 (273)
Q Consensus 59 ~i~~~~~~l~e~~~~l~~-~~~--~~~~~~k~rr~~~~l~~~~~~Le~ 103 (273)
+.++++.+|..+-|+|+. |+| .|.+ =...++++.++|.+.|.+
T Consensus 515 ~~ekKir~L~kkLraIe~LK~r~a~Ge~--Le~nQl~kIq~E~~~l~E 560 (566)
T KOG2315|consen 515 EEEKKIRSLLKKLRAIEALKERMANGEQ--LEVNQLNKIQKEPKLLSE 560 (566)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcccc--cCHHHHHHHhhhHHHHHH
Confidence 445555577766666665 222 2221 133578888888777754
No 175
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=31.75 E-value=2.4e+02 Score=21.72 Aligned_cols=56 Identities=16% Similarity=0.147 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCcChHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 024062 56 EATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEM 111 (273)
Q Consensus 56 ~~~~i~~~~~~l~e~~~~l~~~~~~~~~~~k~rr~~~~l~~~~~~Le~~~~~le~~ 111 (273)
-+.++.+.++.+...-+.-+.....+..+..-...-+.++.....++.+.+.|+++
T Consensus 6 v~~ev~~sl~~l~~~~~~~~~~~~~~~~~~e~~~~~~eL~~~l~~ie~~L~DL~~a 61 (97)
T PF09177_consen 6 VKDEVQSSLDRLESLYRRWQRLRSDTSSSEELKWLKRELRNALQSIEWDLEDLEEA 61 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCcHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455544444444444443333222322222334456677777777777777666
No 176
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=31.68 E-value=2.8e+02 Score=25.80 Aligned_cols=13 Identities=38% Similarity=0.391 Sum_probs=5.1
Q ss_pred HHHHHHHHHHhhh
Q 024062 66 ELKKAADTLHQEE 78 (273)
Q Consensus 66 ~l~e~~~~l~~~~ 78 (273)
+|++.-..+|.++
T Consensus 153 eL~~eleele~e~ 165 (290)
T COG4026 153 ELLKELEELEAEY 165 (290)
T ss_pred HHHHHHHHHHHHH
Confidence 3333334444333
No 177
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=31.64 E-value=2.6e+02 Score=24.41 Aligned_cols=19 Identities=26% Similarity=0.489 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024062 90 NVKSVEKELLQLEEDVKLL 108 (273)
Q Consensus 90 ~~~~l~~~~~~Le~~~~~l 108 (273)
++..+.++....++||+.|
T Consensus 126 e~~~L~~~~~~~~eDY~~L 144 (161)
T TIGR02894 126 ELEKLRQRLSTIEEDYQTL 144 (161)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 178
>PRK10697 DNA-binding transcriptional activator PspC; Provisional
Probab=31.41 E-value=1.6e+02 Score=24.25 Aligned_cols=71 Identities=20% Similarity=0.196 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHhhcccCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcChHhHHHHHHHH
Q 024062 16 VGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVE 95 (273)
Q Consensus 16 iG~~lfv~y~gvGlaalPi~LI~~f~~Rpk~~is~~~~~~~~~~i~~~~~~l~e~~~~l~~~~~~~~~~~k~rr~~~~l~ 95 (273)
+.+++.+++|+.|...+- -++-.+.--|+| .+...+ ..+..-++.++.++
T Consensus 38 l~~vl~~~~~~~~~~~~~-Yi~l~~~lp~~P-------~~~~~~----------------------~~~~s~~~~l~~~~ 87 (118)
T PRK10697 38 IIVVLSIFFGLFVFTLVA-YIILSFALDPMP-------DNMAFG----------------------EQQPSSSELLDEVD 87 (118)
T ss_pred HHHHHHHHHhhchHHHHH-HHHHHHhccCCc-------cccccc----------------------ccCCCHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhcccCc
Q 024062 96 KELLQLEEDVKLLEEMYPQGE 116 (273)
Q Consensus 96 ~~~~~Le~~~~~le~~y~~~~ 116 (273)
++.+.+|++.++.|.-.+..+
T Consensus 88 ~~~~~~e~Rlr~mE~yVTS~~ 108 (118)
T PRK10697 88 RELAAGEQRLREMERYVTSDT 108 (118)
T ss_pred HHHHHHHHHHHHHHHHhcCCC
No 179
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=31.32 E-value=2.5e+02 Score=24.70 Aligned_cols=21 Identities=24% Similarity=0.379 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 024062 92 KSVEKELLQLEEDVKLLEEMY 112 (273)
Q Consensus 92 ~~l~~~~~~Le~~~~~le~~y 112 (273)
..+-++...|+++.+.++..+
T Consensus 106 ~~~l~~l~~l~~~~~~l~~el 126 (188)
T PF03962_consen 106 EELLEELEELKKELKELKKEL 126 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334455555666655555553
No 180
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=31.11 E-value=1.2e+02 Score=32.41 Aligned_cols=12 Identities=17% Similarity=-0.003 Sum_probs=7.3
Q ss_pred hhhHHHHhhccc
Q 024062 31 CLPLGLIFSFIR 42 (273)
Q Consensus 31 alPi~LI~~f~~ 42 (273)
.+|-+.|..+..
T Consensus 493 Glp~~ii~~A~~ 504 (771)
T TIGR01069 493 GIPHFIIEQAKT 504 (771)
T ss_pred CcCHHHHHHHHH
Confidence 467777765443
No 181
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=31.06 E-value=1.3e+02 Score=30.75 Aligned_cols=30 Identities=30% Similarity=0.197 Sum_probs=16.1
Q ss_pred hhhhhhhhhH------HHHhhcccCCCcccChHHHHH
Q 024062 25 GGVGIACLPL------GLIFSFIRRPKAVITRSQYIK 55 (273)
Q Consensus 25 ~gvGlaalPi------~LI~~f~~Rpk~~is~~~~~~ 55 (273)
+++||--||= ..+-++.- |++-|+-++++.
T Consensus 442 ~~YgLl~lP~M~Elk~~~~~~~~~-~~~~id~~~iky 477 (567)
T KOG0345|consen 442 TLYGLLRLPKMPELKQYKIGEFFF-PKPAIDFSEIKY 477 (567)
T ss_pred HHHHHHhCCCcHHHhhhhccceec-cCCCcchhhhcc
Confidence 5677777772 23333322 333377777654
No 182
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=30.83 E-value=78 Score=25.99 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=20.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHh
Q 024062 86 KWRKNVKSVEKELLQLEEDVKLLEEM 111 (273)
Q Consensus 86 k~rr~~~~l~~~~~~Le~~~~~le~~ 111 (273)
.-|.|++-++...++||++...||+.
T Consensus 64 AVREEVe~Lk~qI~eL~er~~~Le~E 89 (123)
T KOG4797|consen 64 AVREEVEVLKEQIRELEERNSALERE 89 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677888888888888888887776
No 183
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=30.70 E-value=3.1e+02 Score=22.59 Aligned_cols=26 Identities=31% Similarity=0.465 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc
Q 024062 89 KNVKSVEKELLQLEEDVKLLEEMYPQ 114 (273)
Q Consensus 89 r~~~~l~~~~~~Le~~~~~le~~y~~ 114 (273)
.+...+++++..|+.+++.+-+.|..
T Consensus 68 ~~~~~L~~el~~l~~ry~t~LellGE 93 (120)
T PF12325_consen 68 KEVEELEQELEELQQRYQTLLELLGE 93 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 46677788888888887777766443
No 184
>KOG0981 consensus DNA topoisomerase I [Replication, recombination and repair]
Probab=30.42 E-value=1.5e+02 Score=31.07 Aligned_cols=65 Identities=31% Similarity=0.344 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccC------CcChHhHHHHHHHHHHHHHHHHHHHHHHHhcccCcc
Q 024062 53 YIKEATELGKKARELKKAADTLHQEERSG------SKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEK 117 (273)
Q Consensus 53 ~~~~~~~i~~~~~~l~e~~~~l~~~~~~~------~~~~k~rr~~~~l~~~~~~Le~~~~~le~~y~~~~~ 117 (273)
..+....++.+.+++.|+-.+.+.+.+.. ....+.+++.++.++.+..|+++.+.++...+..+.
T Consensus 634 h~~smekl~~kI~~~keql~e~~~~l~~ak~~~~~~~~~~~~k~~Ek~~k~~~~l~eqi~kl~~q~~dkee 704 (759)
T KOG0981|consen 634 HEKSMEKLAEKIKAKKEQLKEAEAELKSAKADEKKQEGSKEKKEVEKKEKKLERLEEQLKKLEIQMTDKEE 704 (759)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHHHHHhhhccchhh
Confidence 34456667777777777766666543321 123556667778888888888877777776554443
No 185
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=30.36 E-value=5.9e+02 Score=25.78 Aligned_cols=17 Identities=29% Similarity=0.219 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024062 8 YVVALATIVGSVLFSIF 24 (273)
Q Consensus 8 f~i~~l~~iG~~lfv~y 24 (273)
.+.+.+..++.+.++++
T Consensus 141 ~~~~~~~~~~~~~~l~~ 157 (574)
T PRK11160 141 LVAALVVILVLTIGLSF 157 (574)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 186
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=30.13 E-value=1.2e+02 Score=33.24 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Q 024062 87 WRKNVKSVEKELLQLEEDVKLLEEM 111 (273)
Q Consensus 87 ~rr~~~~l~~~~~~Le~~~~~le~~ 111 (273)
+++.++.+++|...|..+.+.++..
T Consensus 492 ~~~~le~l~~El~~l~~e~~~lq~~ 516 (980)
T KOG0980|consen 492 QAKALESLRQELALLLIELEELQRT 516 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555554443
No 187
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=30.08 E-value=2.8e+02 Score=22.03 Aligned_cols=20 Identities=20% Similarity=0.174 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024062 89 KNVKSVEKELLQLEEDVKLL 108 (273)
Q Consensus 89 r~~~~l~~~~~~Le~~~~~l 108 (273)
+-+.+.++.+..++.+.+.-
T Consensus 60 ~~~~~~~~~~qq~r~~~e~~ 79 (110)
T PF10828_consen 60 QAVEEQQKREQQLRQQSEER 79 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333
No 188
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=30.06 E-value=2.6e+02 Score=21.51 Aligned_cols=61 Identities=11% Similarity=0.266 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCC--cCh---HhHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 024062 54 IKEATELGKKARELKKAADTLHQEERSGS--KGR---KWRKNVKSVEKELLQLEEDVKLLEEMYPQ 114 (273)
Q Consensus 54 ~~~~~~i~~~~~~l~e~~~~l~~~~~~~~--~~~---k~rr~~~~l~~~~~~Le~~~~~le~~y~~ 114 (273)
.+...++.+.++++.+.-+.+++...... .+. --+...+++.++...+-.++..++..|..
T Consensus 49 ~~~~~~~~~~~~~i~~~lk~l~~~~~~~~~~~~~~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~ 114 (117)
T smart00503 49 ERLIDDIKRLAKEIRAKLKELEKENLENRASGSASDRTRKAQTEKLRKKFKEVMNEFQRLQRKYRE 114 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhhcccCCHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555554322111 011 12346667777777777788777776554
No 189
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=29.93 E-value=2.7e+02 Score=24.83 Aligned_cols=58 Identities=16% Similarity=0.268 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-hccCCcChHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 024062 54 IKEATELGKKARELKKAADTLHQE-ERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEM 111 (273)
Q Consensus 54 ~~~~~~i~~~~~~l~e~~~~l~~~-~~~~~~~~k~rr~~~~l~~~~~~Le~~~~~le~~ 111 (273)
++.-..+++|.+.+-|.-..+=.+ +.+-..++..+++++++++.+++||+..+++-+.
T Consensus 78 A~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~l 136 (189)
T TIGR02132 78 ASLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKILEL 136 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555554333332111 1111245667789999999999999987775444
No 190
>PRK00106 hypothetical protein; Provisional
Probab=29.31 E-value=2.7e+02 Score=28.71 Aligned_cols=8 Identities=63% Similarity=0.933 Sum_probs=3.6
Q ss_pred HHHHHHHH
Q 024062 16 VGSVLFSI 23 (273)
Q Consensus 16 iG~~lfv~ 23 (273)
+|+++..+
T Consensus 17 ~~~~~~~~ 24 (535)
T PRK00106 17 IGYVLISI 24 (535)
T ss_pred HHHHHHHH
Confidence 45544443
No 191
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=29.27 E-value=2.5e+02 Score=24.21 Aligned_cols=24 Identities=38% Similarity=0.721 Sum_probs=13.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHH
Q 024062 86 KWRKNVKSVEKELLQLEEDVKLLE 109 (273)
Q Consensus 86 k~rr~~~~l~~~~~~Le~~~~~le 109 (273)
.|+.+-+.+...+..|+.+.+.|+
T Consensus 86 ~~~~e~k~L~~~v~~Le~e~r~L~ 109 (158)
T PF09744_consen 86 QWRQERKDLQSQVEQLEEENRQLE 109 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555
No 192
>TIGR02978 phageshock_pspC phage shock protein C. All members of this protein family are the phage shock protein PspC. These proteins contain a PspC domain, as do other members of the larger family of proteins described by Pfam model pfam04024. The phage shock regulon is restricted to the Proteobacteria and somewhat sparsely distributed there. It is expressed, under positive control of a sigma-54-dependent transcription factor, PspF, which binds and is modulated by PspA. Stresses that induce the psp regulon include phage secretin overexpression, ethanol, heat shock, and protein export defects.
Probab=29.26 E-value=3e+02 Score=22.71 Aligned_cols=18 Identities=17% Similarity=0.409 Sum_probs=9.8
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 024062 87 WRKNVKSVEKELLQLEED 104 (273)
Q Consensus 87 ~rr~~~~l~~~~~~Le~~ 104 (273)
-+++++.+++.++.+|++
T Consensus 89 ~~~~~~~~e~Rl~~mE~y 106 (121)
T TIGR02978 89 VKREFRDLERRLRNMERY 106 (121)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555555554
No 193
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=29.25 E-value=2.3e+02 Score=27.05 Aligned_cols=20 Identities=50% Similarity=0.622 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024062 56 EATELGKKARELKKAADTLH 75 (273)
Q Consensus 56 ~~~~i~~~~~~l~e~~~~l~ 75 (273)
+....-++++++++..+.+.
T Consensus 194 ~m~k~~~~~De~Rkeade~h 213 (294)
T COG1340 194 EMIKLFEEADELRKEADELH 213 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444443
No 194
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=29.06 E-value=3.7e+02 Score=23.74 Aligned_cols=16 Identities=31% Similarity=0.605 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 024062 92 KSVEKELLQLEEDVKL 107 (273)
Q Consensus 92 ~~l~~~~~~Le~~~~~ 107 (273)
..+++++..|+++.+.
T Consensus 156 ~e~~~~l~~l~~ei~~ 171 (176)
T PF12999_consen 156 EELEKKLEELEKEIQA 171 (176)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444433
No 195
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=29.03 E-value=2.1e+02 Score=26.09 Aligned_cols=23 Identities=22% Similarity=0.228 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024062 52 QYIKEATELGKKARELKKAADTL 74 (273)
Q Consensus 52 ~~~~~~~~i~~~~~~l~e~~~~l 74 (273)
||.+++..|...-.+..|.-++|
T Consensus 36 e~~kE~~~L~~Er~~h~eeLrqI 58 (230)
T PF10146_consen 36 EYRKEMEELLQERMAHVEELRQI 58 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444443333333333333
No 196
>PF04787 Pox_H7: Late protein H7; InterPro: IPR006872 This is a family of poxvirus late H7 proteins.
Probab=28.97 E-value=3.8e+02 Score=23.08 Aligned_cols=76 Identities=17% Similarity=0.262 Sum_probs=47.7
Q ss_pred hhcccCC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcChHhHHHHHHHH----HHHHHHHHHHHHHHHhc
Q 024062 38 FSFIRRP-KAVITRSQYIKEATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVE----KELLQLEEDVKLLEEMY 112 (273)
Q Consensus 38 ~~f~~Rp-k~~is~~~~~~~~~~i~~~~~~l~e~~~~l~~~~~~~~~~~k~rr~~~~l~----~~~~~Le~~~~~le~~y 112 (273)
.++.+-+ ++ ++.+||.+.++.|+++....-=+-+.+++- -+.|.|-||=++.++ +......+..+.|+.+-
T Consensus 59 S~YL~~~~~~-i~pde~~~~~~~IA~eLT~~dii~~di~~y---i~~S~kLKrfik~yk~nn~k~~kki~~~~k~Lkia~ 134 (147)
T PF04787_consen 59 SDYLNMKTRP-ITPDEYKKYSSAIAKELTNYDIIDDDIDDY---IRSSKKLKRFIKLYKTNNNKQNKKIKEAAKKLKIAL 134 (147)
T ss_pred hhhhcCCCcc-CCHHHHHHHHHHHHHHHHHHHHHHhhHHHH---hcccHHHHHHHHHHHhccchhhHHHHHHHHHHHHHh
Confidence 3455644 56 999999998888885554443333333321 233566677666664 67777778888888884
Q ss_pred ccCcc
Q 024062 113 PQGEK 117 (273)
Q Consensus 113 ~~~~~ 117 (273)
.++-+
T Consensus 135 ~~giD 139 (147)
T PF04787_consen 135 SRGID 139 (147)
T ss_pred cCCCC
Confidence 44443
No 197
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=28.96 E-value=2.2e+02 Score=25.55 Aligned_cols=17 Identities=12% Similarity=0.438 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024062 89 KNVKSVEKELLQLEEDV 105 (273)
Q Consensus 89 r~~~~l~~~~~~Le~~~ 105 (273)
..++++++.++.|++..
T Consensus 168 aQL~~lQ~qv~~Lq~q~ 184 (192)
T PF11180_consen 168 AQLRQLQRQVRQLQRQA 184 (192)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 45555555555555443
No 198
>PF14182 YgaB: YgaB-like protein
Probab=28.91 E-value=1.5e+02 Score=22.89 Aligned_cols=45 Identities=11% Similarity=0.333 Sum_probs=26.8
Q ss_pred HHHHHHHHhhhccCCcChHhHHHHHHHHHHHHHHHHHHHHHHHhcccCc
Q 024062 68 KKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGE 116 (273)
Q Consensus 68 ~e~~~~l~~~~~~~~~~~k~rr~~~~l~~~~~~Le~~~~~le~~y~~~~ 116 (273)
+|+.++++++-. .-.+..++..++.|.+..+++.+.+...+.++.
T Consensus 23 lERCqeIE~eL~----~l~~ea~l~~i~~EI~~mkk~Lk~Iq~~Fe~QT 67 (79)
T PF14182_consen 23 LERCQEIEKELK----ELEREAELHSIQEEISQMKKELKEIQRVFEKQT 67 (79)
T ss_pred HHHHHHHHHHHH----HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555554332 122445777777777777777777777655544
No 199
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.91 E-value=1.3e+02 Score=30.15 Aligned_cols=28 Identities=18% Similarity=0.285 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 024062 53 YIKEATELGKKARELKKAADTLHQEERS 80 (273)
Q Consensus 53 ~~~~~~~i~~~~~~l~e~~~~l~~~~~~ 80 (273)
+...+..|+++.+.|.|+.++.+.+.|+
T Consensus 238 L~~~~~~L~kqie~L~qeie~~~~~~r~ 265 (439)
T KOG2911|consen 238 LIQARAKLAKQIEFLEQEIEKSKEKLRQ 265 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667888889999999988888877664
No 200
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.55 E-value=1.7e+02 Score=27.52 Aligned_cols=55 Identities=11% Similarity=0.145 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHh-hh---ccCCcChHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 024062 57 ATELGKKARELKKAADTLHQ-EE---RSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEM 111 (273)
Q Consensus 57 ~~~i~~~~~~l~e~~~~l~~-~~---~~~~~~~k~rr~~~~l~~~~~~Le~~~~~le~~ 111 (273)
+..+.++=+.+.|.-++|-+ +. .++.+.++.+...+.|+++.+..-+....|+.+
T Consensus 238 kk~L~qkdq~ileKdkqisnLKad~e~~~~~ek~Hke~v~qL~~k~~~~lk~~a~l~~s 296 (305)
T KOG3990|consen 238 KKLLHQKDQLILEKDKQISNLKADKEYQKELEKKHKERVQQLQKKKEESLKAIAQLRNS 296 (305)
T ss_pred HHHHhhhHHHHHhhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33344444555555555543 11 111133444445566666666666666666544
No 201
>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This domain represents four transmembrane helices of a variety of neurotransmitter-gated ion-channels.; GO: 0006811 ion transport, 0016020 membrane; PDB: 1DXZ_A 3MRA_A 1EQ8_C 1OED_C 2PR9_P 1A11_A 1CEK_A 2BG9_E 2KSR_A 2K59_B ....
Probab=28.43 E-value=1.4e+02 Score=24.00 Aligned_cols=23 Identities=13% Similarity=0.297 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 024062 125 TVLGYLAKLVLGILGFIVSVAWV 147 (273)
Q Consensus 125 ~~l~~~~kLl~Gii~lllSi~w~ 147 (273)
.++=+++..++-+++++.++..|
T Consensus 215 ~viDR~~~~~F~i~f~~~~i~yw 237 (237)
T PF02932_consen 215 MVIDRLFRILFPIAFILFNIVYW 237 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhC
Confidence 56668889999999988888776
No 202
>TIGR01462 greA transcription elongation factor GreA. In the Chlamydias and some spirochetes, the region described by this model is found as the C-terminal region of a much larger protein.
Probab=28.37 E-value=2.6e+02 Score=23.42 Aligned_cols=63 Identities=14% Similarity=0.143 Sum_probs=33.2
Q ss_pred cChHHHHHHHHHHHHHH-HHHHHHHHHHHhhhccCCcC-----hHhHHHHHHHHHHHHHHHHHHHHHHH
Q 024062 48 ITRSQYIKEATELGKKA-RELKKAADTLHQEERSGSKG-----RKWRKNVKSVEKELLQLEEDVKLLEE 110 (273)
Q Consensus 48 is~~~~~~~~~~i~~~~-~~l~e~~~~l~~~~~~~~~~-----~k~rr~~~~l~~~~~~Le~~~~~le~ 110 (273)
+|.+-|++.+.+++..- .+.-|..+.++...+.|-.+ .-.|++...+.+.++.|+++.+.++.
T Consensus 2 ~T~~g~~~L~~el~~L~~~~r~~~~~~~~~a~~~gDl~Ena~y~aak~~~~~~e~ri~~L~~~L~~a~i 70 (151)
T TIGR01462 2 LTQEGYEKLKEELEYLKTVKRPEISEEIAEAREHGDLSENAEYHAAKEEQGFNEGRIAELEDLLANAQV 70 (151)
T ss_pred cCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHCCChhhccchHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 56666666666666222 22334444444433333221 12345666677777777777666554
No 203
>PF11690 DUF3287: Protein of unknown function (DUF3287); InterPro: IPR021704 This eukaryotic family of proteins has no known function.
Probab=28.33 E-value=2.2e+02 Score=23.30 Aligned_cols=22 Identities=27% Similarity=0.382 Sum_probs=10.5
Q ss_pred HhHHHHHHH--HHHHHHHHHHHHH
Q 024062 86 KWRKNVKSV--EKELLQLEEDVKL 107 (273)
Q Consensus 86 k~rr~~~~l--~~~~~~Le~~~~~ 107 (273)
+-+++++.+ .++.+.||.+-..
T Consensus 60 ~L~kKi~~l~veRkmr~Les~p~~ 83 (109)
T PF11690_consen 60 KLRKKIQDLRVERKMRALESHPFD 83 (109)
T ss_pred HHHHHHHHHHHHHHHHhccCChHH
Confidence 334444444 5555555544433
No 204
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=28.30 E-value=1.4e+02 Score=30.43 Aligned_cols=23 Identities=22% Similarity=0.250 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 024062 89 KNVKSVEKELLQLEEDVKLLEEM 111 (273)
Q Consensus 89 r~~~~l~~~~~~Le~~~~~le~~ 111 (273)
++...+++++..||.+.+.|+..
T Consensus 97 aq~~dle~KIkeLEaE~~~Lk~Q 119 (475)
T PRK13729 97 KQRGDDQRRIEKLGQDNAALAEQ 119 (475)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHH
Confidence 44456667777777777777665
No 205
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=28.25 E-value=1.8e+02 Score=30.69 Aligned_cols=58 Identities=16% Similarity=0.239 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhccC-Cc---C--hHhHHHHHHHHHHHHHHHHHHHHHHHhcccCc
Q 024062 59 ELGKKARELKKAADTLHQEERSG-SK---G--RKWRKNVKSVEKELLQLEEDVKLLEEMYPQGE 116 (273)
Q Consensus 59 ~i~~~~~~l~e~~~~l~~~~~~~-~~---~--~k~rr~~~~l~~~~~~Le~~~~~le~~y~~~~ 116 (273)
.+...-++|+++-+.++...... .. + ....+++..++.++..++.+.++|.+.|....
T Consensus 570 ~L~~En~~L~~~l~~le~~~~~~~~~~p~~~~~~~~~e~~~l~~~~~~~ekr~~RLkevf~~ks 633 (722)
T PF05557_consen 570 ALQAENEDLLARLRSLEEGNSQPVDAVPTSSLESQEKEIAELKAELASAEKRNQRLKEVFKAKS 633 (722)
T ss_dssp HHHHHHHHHHHHHHHHTTTT----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444456666666665432211 10 1 12346889999999999999999999976654
No 206
>PRK10780 periplasmic chaperone; Provisional
Probab=28.18 E-value=3.7e+02 Score=22.73 Aligned_cols=7 Identities=14% Similarity=-0.111 Sum_probs=3.2
Q ss_pred CcChHhH
Q 024062 82 SKGRKWR 88 (273)
Q Consensus 82 ~~~~k~r 88 (273)
.+|...|
T Consensus 79 ~ms~~~~ 85 (165)
T PRK10780 79 TMKGSDR 85 (165)
T ss_pred ccCHHHH
Confidence 3554443
No 207
>PF06933 SSP160: Special lobe-specific silk protein SSP160; InterPro: IPR009701 This family consists of several special lobe-specific silk protein SSP160 sequences which appear to be specific to Chironomus (Midge) species.
Probab=28.16 E-value=1.4e+02 Score=30.10 Aligned_cols=46 Identities=11% Similarity=0.098 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHhhhccCCcChHhHHHHHHHHHHHHHHHHHHHH
Q 024062 62 KKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKL 107 (273)
Q Consensus 62 ~~~~~l~e~~~~l~~~~~~~~~~~k~rr~~~~l~~~~~~Le~~~~~ 107 (273)
.|.++++.+.|.--+.+-.|.++++.|.+-+++-+.-..=.||+|+
T Consensus 389 arlekmrak~rravgnrmkgsmkkrvrsrakkfgkaaksgvrryrk 434 (756)
T PF06933_consen 389 ARLEKMRAKCRRAVGNRMKGSMKKRVRSRAKKFGKAAKSGVRRYRK 434 (756)
T ss_pred HHHHHHHHHHHHHhcccccchHHHHHHHHHHHHhHHHHHhHHHHhc
Confidence 3444666655555444444555556665555665555554555443
No 208
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=28.05 E-value=1.4e+02 Score=28.32 Aligned_cols=7 Identities=14% Similarity=0.012 Sum_probs=3.2
Q ss_pred HHHHhhc
Q 024062 34 LGLIFSF 40 (273)
Q Consensus 34 i~LI~~f 40 (273)
+-++++-
T Consensus 145 lkmL~eg 151 (294)
T KOG2881|consen 145 LKMLKEG 151 (294)
T ss_pred HHHHHHh
Confidence 3445543
No 209
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=28.02 E-value=1.5e+02 Score=28.27 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024062 89 KNVKSVEKELLQLEEDVKLLEE 110 (273)
Q Consensus 89 r~~~~l~~~~~~Le~~~~~le~ 110 (273)
++.+++++++..++.+.+.++.
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~ 62 (378)
T TIGR01554 41 TDVEKLKEEIKLLEDAIADLEK 62 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4444555555555544444333
No 210
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=27.87 E-value=4.3e+02 Score=25.03 Aligned_cols=25 Identities=4% Similarity=-0.096 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Q 024062 87 WRKNVKSVEKELLQLEEDVKLLEEM 111 (273)
Q Consensus 87 ~rr~~~~l~~~~~~Le~~~~~le~~ 111 (273)
...++..|+++...-++-++.+...
T Consensus 276 ~~~~~~~L~re~~~a~~~y~~~l~r 300 (362)
T TIGR01010 276 QTADYQRLVLQNELAQQQLKAALTS 300 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446666776666655555544333
No 211
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=27.81 E-value=1.9e+02 Score=32.19 Aligned_cols=11 Identities=36% Similarity=0.573 Sum_probs=5.7
Q ss_pred hhHHHHhhccc
Q 024062 32 LPLGLIFSFIR 42 (273)
Q Consensus 32 lPi~LI~~f~~ 42 (273)
||.|=..+|-.
T Consensus 147 LpQDkV~EFa~ 157 (1072)
T KOG0979|consen 147 LPQDKVKEFAR 157 (1072)
T ss_pred ccHHHHHHHHc
Confidence 45555555543
No 212
>KOG1690 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.77 E-value=2.9e+02 Score=25.14 Aligned_cols=24 Identities=17% Similarity=0.322 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 024062 54 IKEATELGKKARELKKAADTLHQE 77 (273)
Q Consensus 54 ~~~~~~i~~~~~~l~e~~~~l~~~ 77 (273)
+++.+.+..|+.+|-++-.+|++|
T Consensus 138 ke~~k~l~~Rv~~L~~~~~~IrkE 161 (215)
T KOG1690|consen 138 KETDKLLEGRVRQLNSRLESIRKE 161 (215)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555433
No 213
>PHA02898 virion envelope protein; Provisional
Probab=27.64 E-value=70 Score=25.28 Aligned_cols=23 Identities=17% Similarity=0.528 Sum_probs=18.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHh
Q 024062 3 TTFPEYVVALATIVGSVLFSIFG 25 (273)
Q Consensus 3 vsf~~f~i~~l~~iG~~lfv~y~ 25 (273)
.|..-|++|.+.++|.++|.-|+
T Consensus 47 lSii~FIlgivl~lG~~ifs~y~ 69 (92)
T PHA02898 47 ISIISFILAIILILGIIFFKGYN 69 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 36677999999999998876665
No 214
>PF11431 Transport_MerF: Membrane transport protein MerF; InterPro: IPR021091 This entry represents Mercury ion transport protein MerF, which has a core helix-loop-helix domain. It also has two vicinal pairs of cysteine residues which are involved in the transport of Hg(II) across the membrane and are exposed to the cytoplasm []. ; PDB: 1WAZ_A 2LJ2_A 2H3O_A.
Probab=27.58 E-value=46 Score=23.13 Aligned_cols=14 Identities=43% Similarity=0.968 Sum_probs=10.9
Q ss_pred HHHHHHhhhhhhhh
Q 024062 19 VLFSIFGGVGIACL 32 (273)
Q Consensus 19 ~lfv~y~gvGlaal 32 (273)
++-+++|++|++|+
T Consensus 3 iLviL~g~vGLsa~ 16 (46)
T PF11431_consen 3 ILVILFGAVGLSAL 16 (46)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred eehHHHHHhHHHHH
Confidence 45678889998885
No 215
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=27.33 E-value=3.2e+02 Score=23.62 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc
Q 024062 56 EATELGKKARELKKAADTLHQEERS 80 (273)
Q Consensus 56 ~~~~i~~~~~~l~e~~~~l~~~~~~ 80 (273)
+-.++..++.+.++..+.++.+++.
T Consensus 35 EL~evk~~v~~~I~evD~Le~~er~ 59 (159)
T PF05384_consen 35 ELEEVKEEVSEVIEEVDKLEKRERQ 59 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556677777888888775554
No 216
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=27.32 E-value=2.2e+02 Score=25.20 Aligned_cols=23 Identities=22% Similarity=0.292 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 024062 89 KNVKSVEKELLQLEEDVKLLEEM 111 (273)
Q Consensus 89 r~~~~l~~~~~~Le~~~~~le~~ 111 (273)
+++.+++.+...++++.+..+..
T Consensus 159 ~ei~~lks~~~~l~~~~~~~e~~ 181 (190)
T PF05266_consen 159 KEISRLKSEAEALKEEIENAELE 181 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555444443
No 217
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=27.20 E-value=6.6e+02 Score=25.35 Aligned_cols=156 Identities=14% Similarity=0.087 Sum_probs=0.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHhhcccCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 024062 3 TTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATELGKKARELKKAADTLHQEERSGS 82 (273)
Q Consensus 3 vsf~~f~i~~l~~iG~~lfv~y~gvGlaalPi~LI~~f~~Rpk~~is~~~~~~~~~~i~~~~~~l~e~~~~l~~~~~~~~ 82 (273)
++....++.+...-.++..++..++.+..+..-......+ -...+..+...+......+..+-.+.++.-+.+..
T Consensus 142 ~~~~~~~~~~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~ 216 (588)
T PRK13657 142 VALVVLLPLALFMNWRLSLVLVVLGIVYTLITTLVMRKTK-----DGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEA 216 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHH
Q ss_pred cChHhHHHHHHHHHHHHHHHHHHHHHHHhcccCccccchhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHHHHH
Q 024062 83 KGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAETSWALTVLGYLAKLVLGILGF---------IVSVAWVAHIVIY 153 (273)
Q Consensus 83 ~~~k~rr~~~~l~~~~~~Le~~~~~le~~y~~~~~~~~~~~~~~l~~~~kLl~Gii~l---------llSi~w~i~iil~ 153 (273)
...+.++..+++++......+........ +-....+....-++.|.... +++++-....+..
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~ 287 (588)
T PRK13657 217 ETQALRDIADNLLAAQMPVLSWWALASVL---------NRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIG 287 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHH
Q ss_pred HhcCCCCCCchHHHHHHhhhh
Q 024062 154 LLINPPLHPFLNEVFIKLDDL 174 (273)
Q Consensus 154 ~i~k~~~~~fLN~~fi~l~~~ 174 (273)
.+.. +....+.+.......
T Consensus 288 ~l~~--l~~~~~~~~~~~~~~ 306 (588)
T PRK13657 288 RLDQ--VVAFINQVFMAAPKL 306 (588)
T ss_pred HHHH--HHHHHHHHHHHHHHH
No 218
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=26.90 E-value=2.6e+02 Score=20.61 Aligned_cols=53 Identities=13% Similarity=0.344 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcc----CCcChHhHHHHHHHHHHHHHHHH
Q 024062 51 SQYIKEATELGKKARELKKAADTLHQEERS----GSKGRKWRKNVKSVEKELLQLEE 103 (273)
Q Consensus 51 ~~~~~~~~~i~~~~~~l~e~~~~l~~~~~~----~~~~~k~rr~~~~l~~~~~~Le~ 103 (273)
++|-++-.++....+++.+.-++|++..+. .......+++++.+..+...+-.
T Consensus 3 ~~f~~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~el~~l~~~i~~~~~ 59 (103)
T PF00804_consen 3 PEFFDEVQEIREDIDKIKEKLNELRKLHKKILSSPDQDSELKRELDELTDEIKQLFQ 59 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHH
Confidence 456566666666666666666666553321 11112456666665555444433
No 219
>PLN02777 photosystem I P subunit (PSI-P)
Probab=26.70 E-value=2.8e+02 Score=24.30 Aligned_cols=32 Identities=22% Similarity=0.145 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCchHHH
Q 024062 136 GILGFIVSVAWVAHIVIYLLINPPLHPFLNEV 167 (273)
Q Consensus 136 Gii~lllSi~w~i~iil~~i~k~~~~~fLN~~ 167 (273)
|+++..+-.+|+..-++..||+.|+.|.+=++
T Consensus 98 ~l~~aaiVal~v~~~VL~AId~lPLlP~lLEL 129 (167)
T PLN02777 98 SLAFAGVVALWGSAGMISAIDRLPLVPGVLEL 129 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccchHHH
Confidence 55555566678888999999998888877554
No 220
>PRK02793 phi X174 lysis protein; Provisional
Probab=26.66 E-value=2.7e+02 Score=20.68 Aligned_cols=54 Identities=13% Similarity=0.095 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcChHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 024062 52 QYIKEATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEM 111 (273)
Q Consensus 52 ~~~~~~~~i~~~~~~l~e~~~~l~~~~~~~~~~~k~rr~~~~l~~~~~~Le~~~~~le~~ 111 (273)
+..++-.+++.+..-.-+..+.|.+.- .+.+++++.++++++.|.++.+.++..
T Consensus 5 ~~e~Ri~~LE~~lafQe~tIe~Ln~~v------~~Qq~~I~~L~~~l~~L~~rl~~~~~~ 58 (72)
T PRK02793 5 SLEARLAELESRLAFQEITIEELNVTV------TAHEMEMAKLRDHLRLLTEKLKASQPS 58 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 334444445544444333334443211 356678899999999998887776654
No 221
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=26.64 E-value=3.2e+02 Score=22.10 Aligned_cols=24 Identities=25% Similarity=0.261 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 024062 88 RKNVKSVEKELLQLEEDVKLLEEM 111 (273)
Q Consensus 88 rr~~~~l~~~~~~Le~~~~~le~~ 111 (273)
..|++.|.-.-..|++|.+.+...
T Consensus 46 eqE~dSL~FrN~QL~kRV~~LQ~E 69 (102)
T PF10205_consen 46 EQENDSLTFRNQQLTKRVEVLQEE 69 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444555555554443
No 222
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=26.57 E-value=3.1e+02 Score=21.36 Aligned_cols=52 Identities=17% Similarity=0.314 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCcChHhHHHHH----HHHHHHHHHHHHHHHHHH
Q 024062 59 ELGKKARELKKAADTLHQEERSGSKGRKWRKNVK----SVEKELLQLEEDVKLLEE 110 (273)
Q Consensus 59 ~i~~~~~~l~e~~~~l~~~~~~~~~~~k~rr~~~----~l~~~~~~Le~~~~~le~ 110 (273)
.++++..+-++.-+.++.+-+....|..+|+.+. .++......|++-..|..
T Consensus 9 ~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~Lrk 64 (85)
T PF15188_consen 9 GLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLRK 64 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 3455555666777777776666677888887554 444444444444444433
No 223
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=26.55 E-value=2.6e+02 Score=24.69 Aligned_cols=19 Identities=21% Similarity=0.258 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024062 90 NVKSVEKELLQLEEDVKLL 108 (273)
Q Consensus 90 ~~~~l~~~~~~Le~~~~~l 108 (273)
++++.+.+...++.+.+.+
T Consensus 55 ~~~~~~~~~~~~~~~~~~~ 73 (265)
T TIGR00999 55 EFESAEYALEEAQAEVQAA 73 (265)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444443333
No 224
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=26.52 E-value=4.4e+02 Score=28.06 Aligned_cols=20 Identities=25% Similarity=0.564 Sum_probs=14.7
Q ss_pred hhhhhhhhhHHHHhhcccCC
Q 024062 25 GGVGIACLPLGLIFSFIRRP 44 (273)
Q Consensus 25 ~gvGlaalPi~LI~~f~~Rp 44 (273)
+.+.+++.|+..+-+...-|
T Consensus 296 ~li~l~~~~l~~l~~~~~~~ 315 (709)
T COG2274 296 TLIVLAAIPLNVLITLIFQP 315 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888777655
No 225
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=26.47 E-value=1.8e+02 Score=27.68 Aligned_cols=43 Identities=14% Similarity=0.310 Sum_probs=29.3
Q ss_pred CCCchHHHHHHhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHhh
Q 024062 160 LHPFLNEVFIKLDDLWGL-LGTAAFAFFCFYLLLAVIAGAMMLG 202 (273)
Q Consensus 160 ~~~fLN~~fi~l~~~fpl-l~~i~~~~~~~Yll~cs~~G~~~~G 202 (273)
++|.+-..+..+.+++|+ +|=+++.+++++++...+..+.+.-
T Consensus 6 iYp~i~~~l~~~~g~~PFSvgdi~~~~~il~ll~~~~~~~~~~~ 49 (318)
T PF12725_consen 6 IYPVISKLLRRLFGWFPFSVGDILYYLLILFLLYYLIRLIRKIF 49 (318)
T ss_pred chHHHHHHHHHhccCcChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777662 2448888888887777766665543
No 226
>PF11464 Rbsn: Rabenosyn Rab binding domain; InterPro: IPR021565 Rabenosyn-5 (Rbsn) is a multivalent effector with interacts with the Rab family.Rsbn contains distinct Rab4 and Rab5 binding sites within residues 264-500 and 627-784 respectively []. Rab proteins are GTPases involved in the regulation of all stages of membrane trafficking []. ; PDB: 1Z0K_B 1YZM_A 1Z0J_B.
Probab=26.42 E-value=2.1e+02 Score=19.42 Aligned_cols=17 Identities=24% Similarity=0.610 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024062 90 NVKSVEKELLQLEEDVK 106 (273)
Q Consensus 90 ~~~~l~~~~~~Le~~~~ 106 (273)
++..|++.++.|+++++
T Consensus 23 EV~~L~~NL~EL~~e~~ 39 (42)
T PF11464_consen 23 EVATLEENLRELQDEID 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55666666666665544
No 227
>COG4842 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.33 E-value=3.1e+02 Score=21.27 Aligned_cols=69 Identities=13% Similarity=0.337 Sum_probs=35.6
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc------CCcC-------hHhHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 024062 48 ITRSQYIKEATELGKKARELKKAADTLHQEERS------GSKG-------RKWRKNVKSVEKELLQLEEDVKLLEEMYPQ 114 (273)
Q Consensus 48 is~~~~~~~~~~i~~~~~~l~e~~~~l~~~~~~------~~~~-------~k~rr~~~~l~~~~~~Le~~~~~le~~y~~ 114 (273)
++.++.....+.....++++......|+++-.+ |.-. .++.+...++.+.+..+-+..++..+.+..
T Consensus 7 ~~~~~~~~~A~~~~~~~~~i~~~l~~l~s~~~~l~~~W~G~a~~~f~~~~~~w~~~~~~l~~~l~~i~~~l~~~a~~~~~ 86 (97)
T COG4842 7 VNPEEMRATAKDYAGSSGEIQALLQDLASEIAKLQSAWEGDAAEAFQSEQQQWNQAATELNEALEQLADALRHAADAFEE 86 (97)
T ss_pred CCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555554444432211 1111 445566666666666666666665555444
Q ss_pred Cc
Q 024062 115 GE 116 (273)
Q Consensus 115 ~~ 116 (273)
.+
T Consensus 87 ~d 88 (97)
T COG4842 87 AD 88 (97)
T ss_pred HH
Confidence 44
No 228
>smart00055 FCH Fes/CIP4 homology domain. Alignment extended from original report. Highly alpha-helical. Also known as the RAEYL motif or the S. pombe Cdc15 N-terminal domain.
Probab=26.31 E-value=2.6e+02 Score=20.43 Aligned_cols=17 Identities=18% Similarity=0.065 Sum_probs=7.0
Q ss_pred hHHHHHHHHHHHHHHHH
Q 024062 87 WRKNVKSVEKELLQLEE 103 (273)
Q Consensus 87 ~rr~~~~l~~~~~~Le~ 103 (273)
.++..+.+..+...+-+
T Consensus 66 ~~~aw~~~~~e~~~~a~ 82 (87)
T smart00055 66 LSKSWEVLLSETDALAK 82 (87)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444333
No 229
>PRK06286 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=26.13 E-value=83 Score=24.84 Aligned_cols=32 Identities=9% Similarity=0.115 Sum_probs=23.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHH
Q 024062 4 TFPEYVVALATIVGSVLFSIFGGVGIACLPLGL 36 (273)
Q Consensus 4 sf~~f~i~~l~~iG~~lfv~y~gvGlaalPi~L 36 (273)
-+...+++.+..+|.++.. -|++|+.-+|=|+
T Consensus 3 ~~~~ii~~illiiG~~f~l-~gaiGllRlPD~~ 34 (91)
T PRK06286 3 QFVGIIQDILLIIASIGIL-IASIRLWRVEKDR 34 (91)
T ss_pred hHHHHHHHHHHHHHHHHHH-HHHHhheeCCCcc
Confidence 3456677788888876554 4999999998655
No 230
>smart00803 TAF TATA box binding protein associated factor. TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.
Probab=25.87 E-value=2.4e+02 Score=20.54 Aligned_cols=46 Identities=13% Similarity=0.112 Sum_probs=32.2
Q ss_pred hhHHHHhhcccCC--CcccChHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024062 32 LPLGLIFSFIRRP--KAVITRSQYIKEATELGKKARELKKAADTLHQEE 78 (273)
Q Consensus 32 lPi~LI~~f~~Rp--k~~is~~~~~~~~~~i~~~~~~l~e~~~~l~~~~ 78 (273)
+|.+-|+....+- ++ +|.+-+.+.+..++.+..++.+..-++-+..
T Consensus 3 ~p~~~i~ria~~~Gi~r-is~~a~~~l~~~~e~rl~~i~~~A~k~~~ha 50 (65)
T smart00803 3 LPKETIKDVAESLGIGN-LSDEAAKLLAEDVEYRIKEIVQEALKFMRHS 50 (65)
T ss_pred CCHHHHHHHHHHCCCcc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555544433 45 8888888888888888888888777776543
No 231
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=25.77 E-value=2.3e+02 Score=23.30 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCc
Q 024062 90 NVKSVEKELLQLEEDVKLLEEMYPQGE 116 (273)
Q Consensus 90 ~~~~l~~~~~~Le~~~~~le~~y~~~~ 116 (273)
-..+|+.++...|++.+.+.+.+..|+
T Consensus 97 l~~~L~~~~~e~eeeSe~lae~fl~g~ 123 (150)
T PF07200_consen 97 LLARLQAAASEAEEESEELAEEFLDGE 123 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-S-SSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 344677778888888888777765544
No 232
>PRK11020 hypothetical protein; Provisional
Probab=25.61 E-value=3.7e+02 Score=22.24 Aligned_cols=24 Identities=29% Similarity=0.303 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 024062 87 WRKNVKSVEKELLQLEEDVKLLEE 110 (273)
Q Consensus 87 ~rr~~~~l~~~~~~Le~~~~~le~ 110 (273)
|...+.++.+|...|+.+..++..
T Consensus 29 d~~~i~qf~~E~~~l~k~I~~lk~ 52 (118)
T PRK11020 29 DAEKYAQFEKEKATLEAEIARLKE 52 (118)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555554444433
No 233
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=25.60 E-value=3.2e+02 Score=26.80 Aligned_cols=15 Identities=13% Similarity=0.323 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHH
Q 024062 8 YVVALATIVGSVLFS 22 (273)
Q Consensus 8 f~i~~l~~iG~~lfv 22 (273)
|+.+.++.+||++=+
T Consensus 44 f~f~~iss~gwff~i 58 (401)
T PF06785_consen 44 FVFSIISSLGWFFAI 58 (401)
T ss_pred eehHHHHHhHHHHHh
Confidence 556677788887644
No 234
>PF15007 CEP44: Centrosomal spindle body, CEP44
Probab=25.59 E-value=1.9e+02 Score=24.27 Aligned_cols=38 Identities=18% Similarity=0.248 Sum_probs=21.4
Q ss_pred HhhcccCCCcccChHHH-----HHHHHHHHHHH-HHHHHHHHHHHh
Q 024062 37 IFSFIRRPKAVITRSQY-----IKEATELGKKA-RELKKAADTLHQ 76 (273)
Q Consensus 37 I~~f~~Rpk~~is~~~~-----~~~~~~i~~~~-~~l~e~~~~l~~ 76 (273)
-..|-.||. ||.+|+ +|.|.++--+. +..+++-+++++
T Consensus 78 Rdef~YkP~--lT~~QF~s~gFAErKi~i~~Di~~~v~~~h~el~r 121 (131)
T PF15007_consen 78 RDEFNYKPS--LTKAQFFSKGFAERKIIIVCDILNLVKKKHKELQR 121 (131)
T ss_pred HHHhCCCCC--CCHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667774 999996 66666555332 333344444443
No 235
>KOG1465 consensus Translation initiation factor 2B, beta subunit (eIF-2Bbeta/GCD7) [Translation, ribosomal structure and biogenesis]
Probab=25.46 E-value=1.9e+02 Score=27.95 Aligned_cols=69 Identities=25% Similarity=0.339 Sum_probs=39.9
Q ss_pred hhhhhhhhhHHHHhhcccCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC-cChHhHHHHHHHHHHHHHHHH
Q 024062 25 GGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATELGKKARELKKAADTLHQEERSGS-KGRKWRKNVKSVEKELLQLEE 103 (273)
Q Consensus 25 ~gvGlaalPi~LI~~f~~Rpk~~is~~~~~~~~~~i~~~~~~l~e~~~~l~~~~~~~~-~~~k~rr~~~~l~~~~~~Le~ 103 (273)
|++.+|---++|++.+++|.+. =+..++ .+.+++.|++|++...+.- .++=-||=++..|.|+.+|-.
T Consensus 25 gS~aiA~eTl~llr~iIs~~rw-~~~n~L----------i~~vr~~g~~L~~A~psE~~~gNiirrIlkliReE~~~l~~ 93 (353)
T KOG1465|consen 25 GSYAIAIETLNLLRQIISRERW-STANDL----------IESVRDVGKKLHAAQPSELSCGNIIRRILKLIREEVLELTG 93 (353)
T ss_pred CcHHHHHHHHHHHHHHHHhhCc-ccHHHH----------HHHHHHHHHHhhhcCCchhhhhHHHHHHHHHHHHHHHHHhc
Confidence 3445555567788877766544 222221 2367788888887554322 344456666666666666544
Q ss_pred H
Q 024062 104 D 104 (273)
Q Consensus 104 ~ 104 (273)
.
T Consensus 94 ~ 94 (353)
T KOG1465|consen 94 G 94 (353)
T ss_pred c
Confidence 3
No 236
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=25.45 E-value=2.3e+02 Score=28.07 Aligned_cols=25 Identities=20% Similarity=0.306 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Q 024062 87 WRKNVKSVEKELLQLEEDVKLLEEM 111 (273)
Q Consensus 87 ~rr~~~~l~~~~~~Le~~~~~le~~ 111 (273)
-+.|...+++-|+.||.+++.+...
T Consensus 271 lKeEmeSLkeiVkdlEA~hQh~~pN 295 (561)
T KOG1103|consen 271 LKEEMESLKEIVKDLEADHQHLRPN 295 (561)
T ss_pred HHHHHHHHHHHHhhhhhhhhhcCcc
Confidence 4467888999999999998887655
No 237
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=25.28 E-value=78 Score=30.56 Aligned_cols=39 Identities=10% Similarity=0.213 Sum_probs=23.3
Q ss_pred hhhhhHHHHhhcccCCCcccChHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 024062 29 IACLPLGLIFSFIRRPKAVITRSQYIK-EATELGKKARELKKAADTLH 75 (273)
Q Consensus 29 laalPi~LI~~f~~Rpk~~is~~~~~~-~~~~i~~~~~~l~e~~~~l~ 75 (273)
++|+|+...+. |+++.+-+ .+.+++++-.++.+...+.+
T Consensus 52 ~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (324)
T PLN00171 52 FSAIPFTAVKA--------IANSSLGESLQRRLEETKKAAVEESSAFK 91 (324)
T ss_pred eecccHHHHHH--------HhcCcHHHHHHHHHHHhhHHHHHhHHHHH
Confidence 57899999998 66666644 44445544444444444333
No 238
>PRK11637 AmiB activator; Provisional
Probab=25.25 E-value=2.4e+02 Score=27.58 Aligned_cols=11 Identities=18% Similarity=0.241 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 024062 97 ELLQLEEDVKL 107 (273)
Q Consensus 97 ~~~~Le~~~~~ 107 (273)
++..|+++.++
T Consensus 234 ~l~~l~~~~~~ 244 (428)
T PRK11637 234 QLSELRANESR 244 (428)
T ss_pred HHHHHHHHHHH
Confidence 33334443333
No 239
>PRK02201 putative inner membrane protein translocase component YidC; Provisional
Probab=25.22 E-value=2e+02 Score=28.15 Aligned_cols=38 Identities=16% Similarity=0.212 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHhhhccCCcChHhHHHHHHHHHHHHHHHH
Q 024062 63 KARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEE 103 (273)
Q Consensus 63 ~~~~l~e~~~~l~~~~~~~~~~~k~rr~~~~l~~~~~~Le~ 103 (273)
|-+++..+-++||+++++. ++|+.+..+.++|..+|-+
T Consensus 161 km~~lqPel~~Iq~Kyk~~---~~d~~~~~k~q~e~~~Lyk 198 (357)
T PRK02201 161 KQEELQGKKAKIDAKYKDY---KKDKQMKQRKQQEIQELYK 198 (357)
T ss_pred HHHHhhHHHHHHHHHHhcc---cCCHHHHHHHHHHHHHHHH
Confidence 3335556666666666422 2455555555555555543
No 240
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=25.21 E-value=1.8e+02 Score=30.90 Aligned_cols=23 Identities=17% Similarity=0.283 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 024062 89 KNVKSVEKELLQLEEDVKLLEEM 111 (273)
Q Consensus 89 r~~~~l~~~~~~Le~~~~~le~~ 111 (273)
++.+.|..++..+.++..+||..
T Consensus 587 ~~~e~L~~aL~amqdk~~~LE~s 609 (697)
T PF09726_consen 587 KDTEVLMSALSAMQDKNQHLENS 609 (697)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHh
Confidence 34555566666677777777765
No 241
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=25.21 E-value=2.8e+02 Score=28.17 Aligned_cols=20 Identities=15% Similarity=0.258 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 024062 57 ATELGKKARELKKAADTLHQ 76 (273)
Q Consensus 57 ~~~i~~~~~~l~e~~~~l~~ 76 (273)
...+.+--+++.|.+++|++
T Consensus 251 le~Lq~aEqsl~dlQk~Lek 270 (575)
T KOG4403|consen 251 LEGLQRAEQSLEDLQKRLEK 270 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444445566677777765
No 242
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=25.11 E-value=3.7e+02 Score=21.75 Aligned_cols=11 Identities=27% Similarity=0.377 Sum_probs=5.2
Q ss_pred hhhhhHHHHhh
Q 024062 29 IACLPLGLIFS 39 (273)
Q Consensus 29 laalPi~LI~~ 39 (273)
.+.+-+-||-+
T Consensus 24 i~~FiILLIi~ 34 (121)
T PF10669_consen 24 IVVFIILLIIT 34 (121)
T ss_pred HHHHHHHHHHH
Confidence 33444555554
No 243
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=24.98 E-value=1.7e+02 Score=27.88 Aligned_cols=13 Identities=15% Similarity=0.207 Sum_probs=5.2
Q ss_pred hHHHHHHHHHHHH
Q 024062 50 RSQYIKEATELGK 62 (273)
Q Consensus 50 ~~~~~~~~~~i~~ 62 (273)
.+++.+.+.+|.+
T Consensus 203 ~~eL~~lk~~l~~ 215 (312)
T smart00787 203 PTELDRAKEKLKK 215 (312)
T ss_pred HHHHHHHHHHHHH
Confidence 3344443344443
No 244
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=24.97 E-value=2.4e+02 Score=28.54 Aligned_cols=49 Identities=18% Similarity=0.366 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc-CCcChHhHHHHHHHHHHHHHHHHH
Q 024062 56 EATELGKKARELKKAADTLHQEERS-GSKGRKWRKNVKSVEKELLQLEED 104 (273)
Q Consensus 56 ~~~~i~~~~~~l~e~~~~l~~~~~~-~~~~~k~rr~~~~l~~~~~~Le~~ 104 (273)
.+.+|++|...+.++..++++-..- |-.+.+.|.+...|+-..+.||+.
T Consensus 216 ~r~di~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~LEEq 265 (502)
T KOG0982|consen 216 ERIDIERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHMLEEQ 265 (502)
T ss_pred hhhhHHHHHHHHHHHHHHhhcchhccccchhHHHHHHHHHHHHHHHHHHH
Confidence 5666777777777777666653322 224555555555555555555543
No 245
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=24.96 E-value=3.6e+02 Score=21.67 Aligned_cols=21 Identities=14% Similarity=0.259 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024062 55 KEATELGKKARELKKAADTLH 75 (273)
Q Consensus 55 ~~~~~i~~~~~~l~e~~~~l~ 75 (273)
+.-+++.++..++.+.-.+|+
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK 28 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELK 28 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444443
No 246
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=24.67 E-value=1.7e+02 Score=28.20 Aligned_cols=27 Identities=19% Similarity=0.361 Sum_probs=23.1
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 024062 85 RKWRKNVKSVEKELLQLEEDVKLLEEM 111 (273)
Q Consensus 85 ~k~rr~~~~l~~~~~~Le~~~~~le~~ 111 (273)
+.++|+...++.|.++|||+..+..-.
T Consensus 62 rdYqrq~~elneEkrtLeRELARaKV~ 88 (351)
T PF07058_consen 62 RDYQRQVQELNEEKRTLERELARAKVS 88 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 678999999999999999988776543
No 247
>KOG0380 consensus Sterol O-acyltransferase/Diacylglycerol O-acyltransferase [Lipid transport and metabolism]
Probab=24.32 E-value=5.1e+02 Score=26.72 Aligned_cols=92 Identities=18% Similarity=0.205 Sum_probs=61.6
Q ss_pred HHhcccCccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHhhhhhhHHHHHHHHHHHH
Q 024062 109 EEMYPQGEKAETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGTAAFAFFCF 188 (273)
Q Consensus 109 e~~y~~~~~~~~~~~~~~l~~~~kLl~Gii~lllSi~w~i~iil~~i~k~~~~~fLN~~fi~l~~~fpll~~i~~~~~~~ 188 (273)
+..|++.... .|- .++.+.+++++++....+-.=++++=.+.+..+++.....--+..-+...+| | ++.-++.|
T Consensus 294 q~~yPRt~~i--R~~-yvl~k~~e~~g~~~l~~~i~~q~~vP~~~n~~~~~~~~~~~~~~~ll~l~iP--~-il~~Ll~F 367 (523)
T KOG0380|consen 294 QLSYPRTARI--RWR-YVLEKFLELLGCIFLMVFIFQQWMVPVARNSKDPPFSDASRLIERLLKLMIP--G-ILIWLLFF 367 (523)
T ss_pred cccCCccchh--hHH-HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcccccchHHHHHHHHHHHhhh--H-HHHHHHHH
Confidence 3445555532 232 3778889999999999999999999999999887655333445555667889 5 44445556
Q ss_pred HHHHH----HHHHHHHhhhHhh
Q 024062 189 YLLLA----VIAGAMMLGLRLV 206 (273)
Q Consensus 189 Yll~c----s~~G~~~~GiR~~ 206 (273)
|+++= +++=..++|=|-+
T Consensus 368 Y~ifh~~LNa~AEl~rFaDR~F 389 (523)
T KOG0380|consen 368 YLIFHCWLNAVAELTRFADREF 389 (523)
T ss_pred HHHHHHHHHHHHHHHHhhHHhH
Confidence 66653 3445667777754
No 248
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=24.24 E-value=2.4e+02 Score=19.21 Aligned_cols=18 Identities=33% Similarity=0.442 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 024062 60 LGKKARELKKAADTLHQE 77 (273)
Q Consensus 60 i~~~~~~l~e~~~~l~~~ 77 (273)
++++-+.|+..-+.|+.+
T Consensus 3 lE~Dy~~LK~~yd~Lk~~ 20 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAE 20 (45)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 249
>PRK02463 OxaA-like protein precursor; Provisional
Probab=24.12 E-value=3.9e+02 Score=25.46 Aligned_cols=18 Identities=17% Similarity=0.254 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHhhhc
Q 024062 62 KKARELKKAADTLHQEER 79 (273)
Q Consensus 62 ~~~~~l~e~~~~l~~~~~ 79 (273)
++-+++.-+-++||++++
T Consensus 91 ~KM~~lqPe~~~Iq~Kyk 108 (307)
T PRK02463 91 EKMAYLKPVFEPINERLK 108 (307)
T ss_pred HHHHHhChhHHHHHHHHh
Confidence 334455566666777665
No 250
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=23.95 E-value=2.6e+02 Score=19.56 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=22.1
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024062 48 ITRSQYIKEATELGKKARELKKAADTLHQ 76 (273)
Q Consensus 48 is~~~~~~~~~~i~~~~~~l~e~~~~l~~ 76 (273)
++.+++.+....+...++++.+..+++++
T Consensus 4 vd~~~l~~~a~~~~~~~~~l~~~~~~l~~ 32 (86)
T PF06013_consen 4 VDPEQLRAAAQQLQAQADELQSQLQQLES 32 (86)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777788778888777777775
No 251
>PF03449 GreA_GreB_N: Transcription elongation factor, N-terminal; InterPro: IPR022691 Bacterial proteins greA and greB are necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. Arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked DNA/RNA/ polymerase ternary complexes. Cleavage of the nascent transcript by cleavage factors, such as greA or greB, allows the resumption of elongation from the new 3' terminus [, ]. Escherichia coli GreA and GreB are sequence homologues and have homologues in every known bacterial genome []. GreA induces cleavage two or three nucleotides behind the terminus and can only prevent the formation of arrested complexes while greB releases longer sequences up to eighteen nucleotides in length and can rescue preexisting arrested complexes. These functional differences correlate with a distinctive structural feature, the distribution of positively charged residues on one face of the N-terminal coiled coil. Remarkably, despite close functional similarity, the prokaryotic Gre factors have no sequence or structural similarity with eukaryotic TFIIS. ; GO: 0003677 DNA binding, 0032784 regulation of transcription elongation, DNA-dependent; PDB: 1GRJ_A 2EUL_C 3AOH_Y 3AOI_X 2F23_A 2ETN_C 2P4V_B.
Probab=23.94 E-value=3.1e+02 Score=20.46 Aligned_cols=61 Identities=21% Similarity=0.247 Sum_probs=35.2
Q ss_pred cChHHHHHHHHHHHHHH-HHHHHHHHHHHhhhccCCcChHhHHHHHHHHHHHHHHHHHHHHHHH
Q 024062 48 ITRSQYIKEATELGKKA-RELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEE 110 (273)
Q Consensus 48 is~~~~~~~~~~i~~~~-~~l~e~~~~l~~~~~~~~~~~k~rr~~~~l~~~~~~Le~~~~~le~ 110 (273)
+|..-|.+.+.+++.-- .+.-|..+.++.....|-.+ +-.+++.=+++...+|.+-..|+.
T Consensus 6 lT~~g~~~L~~EL~~L~~~~rpe~~~~i~~Ar~~GDls--ENaeY~aAke~q~~le~rI~~Le~ 67 (74)
T PF03449_consen 6 LTPEGYEKLQAELEHLKNVERPEIAEEIAEAREQGDLS--ENAEYHAAKERQAFLEARIRELEE 67 (74)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSST--SSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCcc--cchhHHHHHHHHHHHHHHHHHHHH
Confidence 78888888888888533 35557777777655445432 223444444445555555444444
No 252
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=23.94 E-value=4.3e+02 Score=22.02 Aligned_cols=22 Identities=23% Similarity=0.495 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024062 88 RKNVKSVEKELLQLEEDVKLLE 109 (273)
Q Consensus 88 rr~~~~l~~~~~~Le~~~~~le 109 (273)
++++..+++.+.....|.+.++
T Consensus 88 ~~eV~~v~~dv~~i~~dv~~v~ 109 (126)
T PF07889_consen 88 KDEVTEVREDVSQIGDDVDSVQ 109 (126)
T ss_pred HHHHHHHHhhHHHHHHHHHHHH
Confidence 3444444444444444444433
No 253
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=23.89 E-value=2.7e+02 Score=19.74 Aligned_cols=46 Identities=22% Similarity=0.244 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhhhccCC-cChHhHHHHHHHHHHHHHHHHHHHHHHH
Q 024062 65 RELKKAADTLHQEERSGS-KGRKWRKNVKSVEKELLQLEEDVKLLEE 110 (273)
Q Consensus 65 ~~l~e~~~~l~~~~~~~~-~~~k~rr~~~~l~~~~~~Le~~~~~le~ 110 (273)
+.+.|..++++.+..... -...-++++.+++.|-+.|..+.+....
T Consensus 4 ~Rl~ELe~klkaerE~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r~ 50 (52)
T PF12808_consen 4 LRLEELERKLKAEREARSLDRSAARKRLSKLEGENRLLRAELERLRS 50 (52)
T ss_pred HHHHHHHHHHHHhHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 466777777776553222 2345667888888888888887766543
No 254
>TIGR01404 FlhB_rel_III type III secretion protein, YscU/HrpY family. This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs.
Probab=23.87 E-value=2.1e+02 Score=27.54 Aligned_cols=50 Identities=22% Similarity=0.093 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHhhcc----cCCCcccChHHHHHHHHHHH
Q 024062 12 LATIVGSVLFSIFGGVGIACLPLGLIFSFI----RRPKAVITRSQYIKEATELG 61 (273)
Q Consensus 12 ~l~~iG~~lfv~y~gvGlaalPi~LI~~f~----~Rpk~~is~~~~~~~~~~i~ 61 (273)
.+..++..++.+...++++.+++..+--.. .+.+-.+|+.|.++|.++-+
T Consensus 174 ~~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMskqEvKdE~Ke~E 227 (342)
T TIGR01404 174 LAPIVGELLKLLILVCLGFFLVVGLADFAFQRYLFMKDLKMSKDEVKREYKEQE 227 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhcc
Confidence 344556666666777777777776654322 11222289988888766654
No 255
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=23.83 E-value=5e+02 Score=22.76 Aligned_cols=60 Identities=22% Similarity=0.262 Sum_probs=27.8
Q ss_pred ChHhHHHHHHHHHHHHHHHHHHHHHHHhcccCccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024062 84 GRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYL 154 (273)
Q Consensus 84 ~~k~rr~~~~l~~~~~~Le~~~~~le~~y~~~~~~~~~~~~~~l~~~~kLl~Gii~lllSi~w~i~iil~~ 154 (273)
+.||.+++.+.+++...-.++++.+..... .-+=..+.+...++-=++.-+..+|+-+|.
T Consensus 144 ~~kd~~kl~kae~~l~~a~~~y~~lN~~Lk-----------~eLP~l~~~~~~~~~~~~~~~~~~ql~~~~ 203 (216)
T cd07599 144 SLKDEKQLAKLERKLEEAKEEYEALNELLK-----------SELPKLLALADEFLPPLFKSFYYIQLNIYY 203 (216)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555544444444443311 111123445555555555555555554443
No 256
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=23.63 E-value=8.3e+02 Score=25.27 Aligned_cols=127 Identities=17% Similarity=0.067 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHhhcccCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCc
Q 024062 4 TFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATELGKKARELKKAADTLHQEERSGSK 83 (273)
Q Consensus 4 sf~~f~i~~l~~iG~~lfv~y~gvGlaalPi~LI~~f~~Rpk~~is~~~~~~~~~~i~~~~~~l~e~~~~l~~~~~~~~~ 83 (273)
++...++.+.++++.+..+++-+.-++.+++-.+--..-=+.. ....+.+..++..+...+..+.-.+.-.
T Consensus 262 ~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~e~l~ 332 (694)
T TIGR03375 262 ATLTALIDLPFALLFLLVIAIIGGPLVWVPLVAIPLILLPGLL---------LQRPLSRLAEESMRESAQRNAVLVESLS 332 (694)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred ChHhHHHHHHHHHHHHHHHHHHHHHHHhcccCccccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 024062 84 GRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAETSWALTVLGYLAKLVLGILGFIVSVAWVA 148 (273)
Q Consensus 84 ~~k~rr~~~~l~~~~~~Le~~~~~le~~y~~~~~~~~~~~~~~l~~~~kLl~Gii~lllSi~w~i 148 (273)
+.+.-|..+.-++.....++..++..+. .... .........+.+++..+.+++.+.
T Consensus 333 gi~~ik~~~~e~~~~~~~~~~~~~~~~~--~~~~-------~~~~~~~~~~~~~~~~~~~~~il~ 388 (694)
T TIGR03375 333 GLETIKALNAEGRFQRRWEQTVAALARS--GLKS-------RFLSNLATNFAQFIQQLVSVAIVV 388 (694)
T ss_pred hHHHHHHccccHHHHHHHHHHHHHHHHH--HHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
No 257
>COG2825 HlpA Outer membrane protein [Cell envelope biogenesis, outer membrane]
Probab=23.60 E-value=3.4e+02 Score=23.49 Aligned_cols=14 Identities=36% Similarity=0.591 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q 024062 62 KKARELKKAADTLH 75 (273)
Q Consensus 62 ~~~~~l~e~~~~l~ 75 (273)
++..++-.+++.++
T Consensus 55 ~~~~~lq~~~~el~ 68 (170)
T COG2825 55 KRQKELQKMQKELK 68 (170)
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444444444
No 258
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=23.43 E-value=3.8e+02 Score=27.31 Aligned_cols=18 Identities=22% Similarity=0.219 Sum_probs=10.7
Q ss_pred eeeeecccCCChhhhHHH
Q 024062 208 ITIHPMKWGATLMNSFLF 225 (273)
Q Consensus 208 ~~i~pmr~~~T~~nslLf 225 (273)
.++|-+-.|.|.|.|-.+
T Consensus 233 ~pvYTiP~NSTL~GS~aM 250 (472)
T TIGR03752 233 RPVYTIPENSTLMGSVAM 250 (472)
T ss_pred ceeEecCCCCchhhhHHH
Confidence 356666666666666543
No 259
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=23.18 E-value=2.7e+02 Score=23.15 Aligned_cols=21 Identities=14% Similarity=0.382 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024062 90 NVKSVEKELLQLEEDVKLLEE 110 (273)
Q Consensus 90 ~~~~l~~~~~~Le~~~~~le~ 110 (273)
++..++..-...++....++.
T Consensus 60 ~L~~~~~~~~~i~e~~~kl~~ 80 (126)
T PF09403_consen 60 ELAELKELYAEIEEKIEKLKQ 80 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHH
Confidence 333333333333333333333
No 260
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=23.01 E-value=91 Score=24.60 Aligned_cols=23 Identities=17% Similarity=0.492 Sum_probs=18.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHh
Q 024062 3 TTFPEYVVALATIVGSVLFSIFG 25 (273)
Q Consensus 3 vsf~~f~i~~l~~iG~~lfv~y~ 25 (273)
.|..-|++|.+.++|.++|.-|+
T Consensus 48 lSii~FIlG~vl~lGilifs~y~ 70 (91)
T PHA02680 48 LSVTCFIVGAVLLLGLFVFSMYR 70 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 36677999999999977665555
No 261
>PF13150 DUF3989: Protein of unknown function (DUF3989)
Probab=22.92 E-value=90 Score=24.22 Aligned_cols=38 Identities=24% Similarity=0.374 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-hhhHhhheeeeecccC
Q 024062 179 GTAAFAFFCFYLLLAVIAGAMM-LGLRLVFITIHPMKWG 216 (273)
Q Consensus 179 ~~i~~~~~~~Yll~cs~~G~~~-~GiR~~~~~i~pmr~~ 216 (273)
-.++||.+++|.++++++|.-+ =|-+.---+|.|+...
T Consensus 34 ml~~fa~l~ly~~~~ai~~~Gk~~g~~~~IeHI~~l~l~ 72 (85)
T PF13150_consen 34 MLVLFAALCLYMTVSAIYDIGKEDGERMEIEHIRPLELP 72 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCcccCccceeccccCCC
Confidence 3578999999999999998742 2233333355555443
No 262
>PF13864 Enkurin: Calmodulin-binding
Probab=22.91 E-value=3.6e+02 Score=20.85 Aligned_cols=27 Identities=37% Similarity=0.484 Sum_probs=18.8
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 024062 85 RKWRKNVKSVEKELLQLEEDVKLLEEM 111 (273)
Q Consensus 85 ~k~rr~~~~l~~~~~~Le~~~~~le~~ 111 (273)
...|+.-..+.++...||+|.+.++..
T Consensus 70 ~~~~~rK~~lE~~L~qlE~dI~~lsr~ 96 (98)
T PF13864_consen 70 LRKKRRKEELEKELKQLEKDIKKLSRP 96 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 445566667777888888887777653
No 263
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.85 E-value=2.5e+02 Score=29.34 Aligned_cols=25 Identities=12% Similarity=0.328 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Q 024062 87 WRKNVKSVEKELLQLEEDVKLLEEM 111 (273)
Q Consensus 87 ~rr~~~~l~~~~~~Le~~~~~le~~ 111 (273)
.++|+..+..+++.|..-.|.+...
T Consensus 660 Fk~Elq~~~~~~~~L~~~iET~~~~ 684 (741)
T KOG4460|consen 660 FKKELQLIPDQLRHLGNAIETVTMK 684 (741)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3456666666666665555544443
No 264
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=22.84 E-value=3.1e+02 Score=24.89 Aligned_cols=50 Identities=8% Similarity=0.076 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCcChHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 024062 59 ELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEM 111 (273)
Q Consensus 59 ~i~~~~~~l~e~~~~l~~~~~~~~~~~k~rr~~~~l~~~~~~Le~~~~~le~~ 111 (273)
.+++|+..-+|..+-|++|. .-+..|=..+-.|-+..+.+|+.++.+++.
T Consensus 65 ai~~Rs~sQrEvn~LLqRK~---sWs~~DleRFT~Lyr~dH~~e~~e~~ak~~ 114 (207)
T PF05546_consen 65 AIQQRSSSQREVNELLQRKH---SWSPADLERFTELYRNDHENEQAEEEAKEA 114 (207)
T ss_pred HHHHHHHHHHHHHHHHhccc---CCChHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 34444444455555554332 122333333444444444444444444333
No 265
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=22.84 E-value=3.6e+02 Score=24.72 Aligned_cols=55 Identities=13% Similarity=0.204 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcChHhHHHHHHHHHHHHHHHHH
Q 024062 49 TRSQYIKEATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEED 104 (273)
Q Consensus 49 s~~~~~~~~~~i~~~~~~l~e~~~~l~~~~~~~~~~~k~rr~~~~l~~~~~~Le~~ 104 (273)
..+-...-+.-+.+-++++.+.++.++.+.+ .....+-++++++++++...++++
T Consensus 204 ~~~~l~~~~~~l~~~a~~l~~ia~ai~~~~~-~~~~~~l~~~l~~l~~~l~~~~~~ 258 (284)
T PF12805_consen 204 HSDVLFRFQRLLEQLAQALRQIAQAILRGRP-YHHRNRLKRALEALEESLEFLRQQ 258 (284)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CCCchHHHHHHHHHHHHHHHHHHh
No 266
>PLN03223 Polycystin cation channel protein; Provisional
Probab=22.82 E-value=1.6e+02 Score=33.92 Aligned_cols=58 Identities=22% Similarity=0.306 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCcChHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 024062 54 IKEATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEM 111 (273)
Q Consensus 54 ~~~~~~i~~~~~~l~e~~~~l~~~~~~~~~~~k~rr~~~~l~~~~~~Le~~~~~le~~ 111 (273)
.+++.||++-|.-+.++--+.-+.+.++.-.....+|+++|+|....|-+-++++.+.
T Consensus 1543 ~at~~ei~~aa~~~~~~~g~~p~~~~~~e~~~~l~~e~~~L~~s~erL~~~Q~~l~eg 1600 (1634)
T PLN03223 1543 LATADEIDQAAHMLMDQVGQVPDDEDDDEDGDVLEKEVDQLQQSLERLAEVQRELAEG 1600 (1634)
T ss_pred cccHHHHHHHHHHHHHHhCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3467777777777766554443322222222344678888888888887777777665
No 267
>COG3167 PilO Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=22.76 E-value=3.1e+02 Score=24.76 Aligned_cols=48 Identities=19% Similarity=0.311 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhhhccCCcChHhHHHHHHHHHHHHHHHHHHHHHHHhcccCc
Q 024062 66 ELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGE 116 (273)
Q Consensus 66 ~l~e~~~~l~~~~~~~~~~~k~rr~~~~l~~~~~~Le~~~~~le~~y~~~~ 116 (273)
++..+.+++++.+++ +.-+--+++.+|.+.-++|+++..+....+...
T Consensus 53 ~~~~eEe~LKs~~q~---K~~~aanL~~lr~Ql~emee~~~~llrQLPs~t 100 (211)
T COG3167 53 ELEAEEEELKSTYQQ---KAIQAANLEALRAQLAEMEERFDILLRQLPSDT 100 (211)
T ss_pred HHHHHHHHHHHHHHH---HHHHHhchHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 556667777766541 111335889999999999999999998855544
No 268
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=22.71 E-value=4.9e+02 Score=22.30 Aligned_cols=15 Identities=13% Similarity=0.264 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHH
Q 024062 131 AKLVLGILGFIVSVA 145 (273)
Q Consensus 131 ~kLl~Gii~lllSi~ 145 (273)
.|-+.|+++.+++++
T Consensus 155 lr~~~g~i~~~~a~~ 169 (177)
T PF07798_consen 155 LRWLVGVIFGCVALV 169 (177)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555555554443
No 269
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=22.60 E-value=3.8e+02 Score=26.03 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 024062 87 WRKNVKSVEKELLQLEEDVKLLEE 110 (273)
Q Consensus 87 ~rr~~~~l~~~~~~Le~~~~~le~ 110 (273)
+.+|..++..+.++||++...+..
T Consensus 375 h~eEk~kle~~rr~Leee~~~f~~ 398 (406)
T KOG3859|consen 375 HQEEKKKLEEKRKQLEEEVNAFQR 398 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555555544443
No 270
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=22.60 E-value=7.8e+02 Score=24.58 Aligned_cols=126 Identities=10% Similarity=-0.001 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHhhcccCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcC
Q 024062 5 FPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATELGKKARELKKAADTLHQEERSGSKG 84 (273)
Q Consensus 5 f~~f~i~~l~~iG~~lfv~y~gvGlaalPi~LI~~f~~Rpk~~is~~~~~~~~~~i~~~~~~l~e~~~~l~~~~~~~~~~ 84 (273)
++..+.++..++|.++++++-..+++...+-.+--..--+.. ......+..++..+...+..+.-.+.-.+
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 206 (576)
T TIGR02204 136 LSMALRNALMCIGGLIMMFITSPKLTSLVLLAVPLVLLPILL---------FGRRVRKLSRESQDRIADAGSYAGETLGA 206 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHhcccCccccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 024062 85 RKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAETSWALTVLGYLAKLVLGILGFIVSVAWVA 148 (273)
Q Consensus 85 ~k~rr~~~~l~~~~~~Le~~~~~le~~y~~~~~~~~~~~~~~l~~~~kLl~Gii~lllSi~w~i 148 (273)
.+.-|..+.-++.....++..++.... .... .-....+..+...+..+..++++.
T Consensus 207 ~~~ik~~~~~~~~~~~~~~~~~~~~~~--~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 261 (576)
T TIGR02204 207 IRTVQAFGHEDAERSRFGGAVEKAYEA--ARQR-------IRTRALLTAIVIVLVFGAIVGVLW 261 (576)
T ss_pred cHHHHHhccCHHHHHHHHHHHHHHHHH--HHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
No 271
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=22.45 E-value=7.7e+02 Score=25.90 Aligned_cols=23 Identities=0% Similarity=0.005 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 024062 87 WRKNVKSVEKELLQLEEDVKLLE 109 (273)
Q Consensus 87 ~rr~~~~l~~~~~~Le~~~~~le 109 (273)
...+++.|+|+....++-++.+.
T Consensus 374 ~~~e~~~L~Re~~~~~~~Y~~ll 396 (754)
T TIGR01005 374 QQVDLDALQRDAAAKRQLYESYL 396 (754)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666665555544433
No 272
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=22.40 E-value=2.3e+02 Score=27.25 Aligned_cols=41 Identities=29% Similarity=0.287 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHhhhccCCcChHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 024062 62 KKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEM 111 (273)
Q Consensus 62 ~~~~~l~e~~~~l~~~~~~~~~~~k~rr~~~~l~~~~~~Le~~~~~le~~ 111 (273)
-|..+++|..|+-+ ||.|.=++-|++.|..||...+.|.|.
T Consensus 294 vRLmKNREAARECR---------RKKKEYVKCLENRVAVLENQNKaLIEE 334 (348)
T KOG3584|consen 294 VRLMKNREAARECR---------RKKKEYVKCLENRVAVLENQNKALIEE 334 (348)
T ss_pred HHHHhhHHHHHHHH---------HhHhHHHHHHHhHHHHHhcccHHHHHH
Confidence 35567777766654 233334556777787777776665554
No 273
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=22.36 E-value=1e+02 Score=22.53 Aligned_cols=25 Identities=32% Similarity=0.447 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Q 024062 87 WRKNVKSVEKELLQLEEDVKLLEEM 111 (273)
Q Consensus 87 ~rr~~~~l~~~~~~Le~~~~~le~~ 111 (273)
-|.|++.++.....|+++.+.||..
T Consensus 12 VrEEVevLK~~I~eL~~~n~~Le~E 36 (59)
T PF01166_consen 12 VREEVEVLKEQIAELEERNSQLEEE 36 (59)
T ss_dssp -TTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777777777776665
No 274
>PF11174 DUF2970: Protein of unknown function (DUF2970); InterPro: IPR021344 This short family is conserved in Proteobacteria. The function is not known.
Probab=22.35 E-value=1.7e+02 Score=20.99 Aligned_cols=27 Identities=7% Similarity=0.215 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024062 125 TVLGYLAKLVLGILGFIVSVAWVAHIV 151 (273)
Q Consensus 125 ~~l~~~~kLl~Gii~lllSi~w~i~ii 151 (273)
+|.-.+.--+.+.++++.++..++|+.
T Consensus 29 ~p~~~Ii~gii~~~~fV~~Lv~lV~~v 55 (56)
T PF11174_consen 29 SPVHFIIVGIILAALFVAGLVLLVNLV 55 (56)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555666666777777888877765
No 275
>PRK01637 hypothetical protein; Reviewed
Probab=22.31 E-value=6.1e+02 Score=23.26 Aligned_cols=33 Identities=12% Similarity=0.100 Sum_probs=17.9
Q ss_pred eeeecccCCChhhhHHHHHHHHHHHHHHHHHHHH
Q 024062 209 TIHPMKWGATLMNSFLFNVGLILLCSISVIQFCS 242 (273)
Q Consensus 209 ~i~pmr~~~T~~nslLfn~~Llll~s~av~qf~~ 242 (273)
|-.+.+.++..| +-++.+.+..+.+.+...+-.
T Consensus 195 P~~k~~~r~~~~-Ga~~a~~~w~~~~~~f~~Yv~ 227 (286)
T PRK01637 195 PNKKVPFRHALV-GALVAALLFELGKKGFALYIT 227 (286)
T ss_pred CCCccchHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555 455666666666655544443
No 276
>TIGR01541 tape_meas_lam_C phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=22.30 E-value=5.1e+02 Score=24.91 Aligned_cols=18 Identities=11% Similarity=0.187 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 024062 94 VEKELLQLEEDVKLLEEM 111 (273)
Q Consensus 94 l~~~~~~Le~~~~~le~~ 111 (273)
+.+++..++++++.....
T Consensus 128 l~~~l~~~~~~y~~~d~~ 145 (332)
T TIGR01541 128 LNEALAELHAYYAAEDAL 145 (332)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555566666665554
No 277
>PF03245 Phage_lysis: Bacteriophage Rz lysis protein; InterPro: IPR004929 Many bacteriophages with Gram-negative hosts contain two auxiliary lysis genes Rz and Rz1. These genes are nested, with Rz1 occupying the last third of Rz in a +1 reading frame. Both of these genes are required for host cell lysis if the outer membrane is stabilised by millimolar concentrations of divalent cations, but are otherwise uneccessary []. The Rz protein is believed to posses endopeptidase activity, while Rz1 encodes a prolipoprotein which, after cleavage by a signal peptidase, is located in the outer membrane. It has been suggested that these two proteins may form a complex which cleaves the oligopeptide crosslinks between glycosidic strands in the peptidoglycan and the Lpp lipoproteins of the outer bacterial membrane. For more information see []. This entry represents the Rz protein and related sequences. This family is not considered to be a peptidase according to the MEROPs database.; GO: 0019835 cytolysis
Probab=22.25 E-value=3.3e+02 Score=22.32 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=16.7
Q ss_pred cChHhHHHHHHHHHHHHHHHHHHHH
Q 024062 83 KGRKWRKNVKSVEKELLQLEEDVKL 107 (273)
Q Consensus 83 ~~~k~rr~~~~l~~~~~~Le~~~~~ 107 (273)
...|+-+|++.-+.+-..|..+.+.
T Consensus 36 ld~k~tkEL~~Ak~e~~~Lr~dl~a 60 (125)
T PF03245_consen 36 LDAKYTKELADAKAEIDRLRADLAA 60 (125)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHc
Confidence 4566667777777777777776543
No 278
>COG1938 Archaeal enzymes of ATP-grasp superfamily [General function prediction only]
Probab=22.03 E-value=1.7e+02 Score=27.20 Aligned_cols=28 Identities=18% Similarity=0.285 Sum_probs=15.0
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024062 48 ITRSQYIKEATELGKKARELKKAADTLH 75 (273)
Q Consensus 48 is~~~~~~~~~~i~~~~~~l~e~~~~l~ 75 (273)
++-+.+.+++.+|+++.+++.|+-++-+
T Consensus 204 V~td~L~keAe~i~~~lekl~eq~~~~~ 231 (244)
T COG1938 204 VDTDKLEKEAEEIEEQLEKLAEQLEKEE 231 (244)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555544444
No 279
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=22.02 E-value=3.8e+02 Score=27.78 Aligned_cols=62 Identities=16% Similarity=0.366 Sum_probs=0.0
Q ss_pred HHHHhhcccCCCcccChH-------HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcChHhHHHHHHHHHHHHHHHHHHH
Q 024062 34 LGLIFSFIRRPKAVITRS-------QYIKEATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVK 106 (273)
Q Consensus 34 i~LI~~f~~Rpk~~is~~-------~~~~~~~~i~~~~~~l~e~~~~l~~~~~~~~~~~k~rr~~~~l~~~~~~Le~~~~ 106 (273)
++.++++..+.+. ..++ +.++.+.+.+++.+++.|+.++++ ++.++++++..+++++.+
T Consensus 59 l~~L~~~~~~~~~-~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~i~~l~-------------~~~~~L~~~~~~l~~~~~ 124 (646)
T PRK05771 59 LDKLRSYLPKLNP-LREEKKKVSVKSLEELIKDVEEELEKIEKEIKELE-------------EEISELENEIKELEQEIE 124 (646)
T ss_pred HHHHHHhcccccc-chhhhccccccCHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHH
Q ss_pred HHH
Q 024062 107 LLE 109 (273)
Q Consensus 107 ~le 109 (273)
.++
T Consensus 125 ~l~ 127 (646)
T PRK05771 125 RLE 127 (646)
T ss_pred Hhh
No 280
>PF05644 Miff: Mitochondrial and peroxisomal fission factor Mff; InterPro: IPR008518 This family consists of several eukaryotic proteins of unknown function.
Probab=22.00 E-value=2.8e+02 Score=25.70 Aligned_cols=19 Identities=26% Similarity=0.566 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 024062 93 SVEKELLQLEEDVKLLEEM 111 (273)
Q Consensus 93 ~l~~~~~~Le~~~~~le~~ 111 (273)
.+||.+..|.||...||+.
T Consensus 199 ~lrrQi~klnrRl~~lE~~ 217 (246)
T PF05644_consen 199 SLRRQIIKLNRRLQALEEE 217 (246)
T ss_pred HHHHHHHHHhHHHHHHHHH
Confidence 6667777777777777665
No 281
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=21.86 E-value=2.8e+02 Score=24.53 Aligned_cols=13 Identities=15% Similarity=0.345 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 024062 63 KARELKKAADTLH 75 (273)
Q Consensus 63 ~~~~l~e~~~~l~ 75 (273)
+.+.|+|++..|+
T Consensus 131 ~lD~Lr~qq~~Lq 143 (179)
T PF13942_consen 131 ELDALRQQQQRLQ 143 (179)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444443
No 282
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=21.84 E-value=8.2e+02 Score=24.52 Aligned_cols=8 Identities=0% Similarity=-0.259 Sum_probs=3.4
Q ss_pred HHHHHHHH
Q 024062 12 LATIVGSV 19 (273)
Q Consensus 12 ~l~~iG~~ 19 (273)
.+..++|.
T Consensus 159 ~l~~~~~~ 166 (582)
T PRK11176 159 MMFYYSWQ 166 (582)
T ss_pred HHHHHHHH
Confidence 33444444
No 283
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=21.71 E-value=3e+02 Score=27.58 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 024062 89 KNVKSVEKELLQLEEDVKLLEEM 111 (273)
Q Consensus 89 r~~~~l~~~~~~Le~~~~~le~~ 111 (273)
.+.+.+++|+..||+++..-.+-
T Consensus 266 t~q~~leqeva~le~yyQ~y~~l 288 (499)
T COG4372 266 TAQARLEQEVAQLEAYYQAYVRL 288 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 36667778888888777665553
No 284
>KOG3819 consensus Uncharacterized conserved proteins (Hepatitis delta antigen-interacting protein A) [Function unknown]
Probab=21.68 E-value=1.9e+02 Score=29.37 Aligned_cols=28 Identities=18% Similarity=0.169 Sum_probs=20.9
Q ss_pred ChHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 024062 84 GRKWRKNVKSVEKELLQLEEDVKLLEEM 111 (273)
Q Consensus 84 ~~k~rr~~~~l~~~~~~Le~~~~~le~~ 111 (273)
+.+.+.|+....++.+.||.+++.++..
T Consensus 134 S~~~~~eva~~~qKl~~LE~kqe~l~re 161 (513)
T KOG3819|consen 134 SGAMLPEVAGYQQKLYELENKQEELLRE 161 (513)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4455668888888888888888776654
No 285
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=21.67 E-value=6.3e+02 Score=23.18 Aligned_cols=19 Identities=11% Similarity=0.113 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 024062 59 ELGKKARELKKAADTLHQE 77 (273)
Q Consensus 59 ~i~~~~~~l~e~~~~l~~~ 77 (273)
.++.+...+.|.+++|+.-
T Consensus 48 ~~~~~~~~~~~l~~ql~~l 66 (263)
T PRK10803 48 ISNAHSQLLTQLQQQLSDN 66 (263)
T ss_pred HHHhhhHHHHHHHHHHHHH
Confidence 3444555566777777653
No 286
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=21.65 E-value=3.9e+02 Score=20.80 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 024062 90 NVKSVEKELLQLEEDVKLLEEMY 112 (273)
Q Consensus 90 ~~~~l~~~~~~Le~~~~~le~~y 112 (273)
++..|...+..|+++..+||..+
T Consensus 74 ~V~~LE~~v~~LD~ysk~LE~k~ 96 (99)
T PF10046_consen 74 QVTELEQTVYELDEYSKELESKF 96 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555666666666666666543
No 287
>cd07643 I-BAR_IMD_MIM Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Missing In Metastasis. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. Members of this subfamily include missing in metastasis (MIM) or metastasis suppressor 1 (MTSS1), metastasis suppressor 1-like (MTSSL) or ABBA (Actin-Bundling protein with BAIAP2 homology), and similar proteins. They contain an N-terminal IMD and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. MIM was originally identified as a missing transcript from metastatic bladder and prostate cancer cells. It is a scaffold protein that functions in a signaling pathway between the PDGF receptor, Src kinases, and actin assembly. It may also function as a cofactor of the Sonic hedgehog (Shh) transcriptional pathway and may participate in tumor development and progression via this pathway. ABBA regulate
Probab=21.58 E-value=5.8e+02 Score=23.55 Aligned_cols=15 Identities=33% Similarity=0.563 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q 024062 52 QYIKEATELGKKARE 66 (273)
Q Consensus 52 ~~~~~~~~i~~~~~~ 66 (273)
+|+..+++|.++..+
T Consensus 123 ~~kk~R~elKk~~~d 137 (231)
T cd07643 123 EYKKARQEIKKKSSD 137 (231)
T ss_pred HHHHHHHHHHHHhhh
Confidence 344444444444333
No 288
>PF03189 Otopetrin: Otopetrin; InterPro: IPR004878 The otopetrins are a group of proteins that are restricted to the metazoa. The structure of otopetrin-1 (Q80VM9 from SWISSPROT) shows it to have 12 transmembrane domains, with three conserved sub-domains (OD-1 to OD-III) []. Otopetrins modulate calcium homeostasis and influx of calcium in response to extracellular ATP. The otopetrins are required for normal formation of otoconia/otoliths in the inner ear. Otoconia are minute biomineral particles embedded in a gelatinous membrane that overlies the sensory epithelium in the inner ear. Gravity and acceleration cause the octoconia to deflect the stereocilia of sensory hair cells. Otoconia are required for normal processing of information regarding spatial orientation and acceleration.
Probab=21.55 E-value=5.2e+02 Score=25.75 Aligned_cols=16 Identities=31% Similarity=0.507 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 024062 131 AKLVLGILGFIVSVAW 146 (273)
Q Consensus 131 ~kLl~Gii~lllSi~w 146 (273)
.-+++|++.++++++-
T Consensus 240 ~Glf~Gil~lv~tii~ 255 (441)
T PF03189_consen 240 KGLFLGILVLVATIIV 255 (441)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 4578888888887654
No 289
>PRK12705 hypothetical protein; Provisional
Probab=21.50 E-value=4.7e+02 Score=26.82 Aligned_cols=55 Identities=22% Similarity=0.240 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcChHhHHHHHHHHHHHHHHHHHHHHHHH
Q 024062 50 RSQYIKEATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEE 110 (273)
Q Consensus 50 ~~~~~~~~~~i~~~~~~l~e~~~~l~~~~~~~~~~~k~rr~~~~l~~~~~~Le~~~~~le~ 110 (273)
..++++++.+++++=+.+.++.++++++.+ +-.++-+.+.++...|+++.+.+++
T Consensus 69 e~e~~~~~~~~~~~e~rl~~~e~~l~~~~~------~l~~~~~~l~~~~~~l~~~~~~~~~ 123 (508)
T PRK12705 69 RQEARREREELQREEERLVQKEEQLDARAE------KLDNLENQLEEREKALSARELELEE 123 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
No 290
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=21.47 E-value=2.2e+02 Score=30.54 Aligned_cols=13 Identities=23% Similarity=0.192 Sum_probs=7.6
Q ss_pred hhhhHHHHhhccc
Q 024062 30 ACLPLGLIFSFIR 42 (273)
Q Consensus 30 aalPi~LI~~f~~ 42 (273)
..+|-+.|..+..
T Consensus 497 ~Glp~~ii~~A~~ 509 (782)
T PRK00409 497 LGLPENIIEEAKK 509 (782)
T ss_pred hCcCHHHHHHHHH
Confidence 3467777765443
No 291
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=21.44 E-value=1.6e+02 Score=23.10 Aligned_cols=24 Identities=17% Similarity=0.173 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHh
Q 024062 15 IVGSVLFSIFGGVGIACLPLGLIF 38 (273)
Q Consensus 15 ~iG~~lfv~y~gvGlaalPi~LI~ 38 (273)
.+=+.+.+.||.+.+..+=.++..
T Consensus 39 ~lP~~~Lv~fG~Ysl~~lgy~v~t 62 (91)
T PF08285_consen 39 YLPFYALVSFGCYSLFTLGYGVAT 62 (91)
T ss_pred HhhHHHHHHHHHHHHHHHHHhhhc
Confidence 444566678888888877776654
No 292
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=21.31 E-value=5.8e+02 Score=22.61 Aligned_cols=43 Identities=7% Similarity=0.065 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc--cCCcChHhHHHHHHH
Q 024062 52 QYIKEATELGKKARELKKAADTLHQEER--SGSKGRKWRKNVKSV 94 (273)
Q Consensus 52 ~~~~~~~~i~~~~~~l~e~~~~l~~~~~--~~~~~~k~rr~~~~l 94 (273)
|+...|..++.=-..+.|....+-+... ...+|..+|.|.+.|
T Consensus 106 Elq~mr~~ln~FR~qm~dlE~~l~~QQalvy~hMSeeER~EaeQL 150 (179)
T PF14723_consen 106 ELQQMRRSLNSFREQMMDLELHLMRQQALVYRHMSEEEREEAEQL 150 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhcCCHHHHHHHHHH
Confidence 4444444444333344444444433332 145788888766643
No 293
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=21.09 E-value=2.7e+02 Score=21.59 Aligned_cols=53 Identities=30% Similarity=0.474 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCC--cChHhH--HHHHHHHHHHHHHHHHHHHHHHh
Q 024062 59 ELGKKARELKKAADTLHQEERSGS--KGRKWR--KNVKSVEKELLQLEEDVKLLEEM 111 (273)
Q Consensus 59 ~i~~~~~~l~e~~~~l~~~~~~~~--~~~k~r--r~~~~l~~~~~~Le~~~~~le~~ 111 (273)
++.++-.++....++++.+.+.-. .+...+ .+...+..+...+.++...++..
T Consensus 33 ~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~ 89 (108)
T PF02403_consen 33 ELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQ 89 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555554443221 111111 24666777777777777777665
No 294
>PF10329 DUF2417: Region of unknown function (DUF2417); InterPro: IPR019431 This entry represents a family of fungal proteins with no known function. In some cases these proteins also contain an alpha/beta hydrolase fold (IPR000073 from INTERPRO).
Probab=20.76 E-value=2.6e+02 Score=25.65 Aligned_cols=32 Identities=9% Similarity=0.212 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 024062 129 YLAKLVLGILGFIVSVAWVAHIVIYLLINPPLH 161 (273)
Q Consensus 129 ~~~kLl~Gii~lllSi~w~i~iil~~i~k~~~~ 161 (273)
+..|.+ ..++++++++|++=++++....+|.+
T Consensus 36 r~~r~i-~~~~l~i~~iw~v~llvS~F~s~Pg~ 67 (232)
T PF10329_consen 36 RNLRWI-LNIFLAINFIWWVLLLVSDFFSPPGF 67 (232)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 334444 45678899999999999988876543
No 295
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=20.71 E-value=2.2e+02 Score=23.56 Aligned_cols=53 Identities=19% Similarity=0.225 Sum_probs=0.0
Q ss_pred HHHHhhhhhhhhhHHHHhhcccCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024062 21 FSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATELGKKARELKKAADTLHQE 77 (273)
Q Consensus 21 fv~y~gvGlaalPi~LI~~f~~Rpk~~is~~~~~~~~~~i~~~~~~l~e~~~~l~~~ 77 (273)
.++|+ ||..++=...-++ +|+.. -..++..++..+++++.++|.++.+..+..
T Consensus 82 ~fiF~-Va~~li~~E~~Rs--~~ke~-~Ke~~~~~~l~~L~~~i~~L~~~~~~~~~~ 134 (134)
T PF07047_consen 82 AFIFS-VAAGLIIYEYWRS--ARKEA-KKEEELQERLEELEERIEELEEQVEKQQER 134 (134)
T ss_pred HHHHH-HHHHHHHHHHHHH--HhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 296
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=20.70 E-value=5.5e+02 Score=22.14 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Q 024062 87 WRKNVKSVEKELLQLEEDVKLLEEM 111 (273)
Q Consensus 87 ~rr~~~~l~~~~~~Le~~~~~le~~ 111 (273)
-+.+++.+++|...||+....+.+.
T Consensus 62 l~~~l~~~~~el~~le~~k~~id~~ 86 (180)
T PF04678_consen 62 LRKRLEELRQELAPLEKIKQEIDEK 86 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777778888887766665553
No 297
>PF12065 DUF3545: Protein of unknown function (DUF3545); InterPro: IPR021932 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 60 to 77 amino acids in length. This protein has two completely conserved residues (R and L) that may be functionally important.
Probab=20.62 E-value=98 Score=22.62 Aligned_cols=12 Identities=42% Similarity=1.096 Sum_probs=6.0
Q ss_pred cChHhHHHHHHHH
Q 024062 83 KGRKWRKNVKSVE 95 (273)
Q Consensus 83 ~~~k~rr~~~~l~ 95 (273)
.+|||| |+.+++
T Consensus 23 ~KRKWR-EIEAik 34 (59)
T PF12065_consen 23 KKRKWR-EIEAIK 34 (59)
T ss_pred cchhHH-HHHHHH
Confidence 456665 444443
No 298
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=20.61 E-value=3.8e+02 Score=25.05 Aligned_cols=26 Identities=27% Similarity=0.356 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc
Q 024062 89 KNVKSVEKELLQLEEDVKLLEEMYPQ 114 (273)
Q Consensus 89 r~~~~l~~~~~~Le~~~~~le~~y~~ 114 (273)
.+++....++..||++.++|.+...-
T Consensus 83 ~~~~~~~~~~~~l~~EN~~Lr~lL~~ 108 (284)
T COG1792 83 AELEQLLEEVESLEEENKRLKELLDF 108 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 46777888888899998888887433
No 299
>PF01405 PsbT: Photosystem II reaction centre T protein; InterPro: IPR001743 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbT found in PSII, which is thought to be associated with the D1 (PsbA) - D2 (PsbD) heterodimer. PsbT may be involved in the formation and/or stabilisation of dimeric PSII complexes, because in the absence of this protein dimeric PSII complexes were found to be less abundant. Furthermore, although PsbT does not confer photo-protection, it is required for the efficient recovery of photo-damaged PSII [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3BZ1_T 1S5L_t 2AXT_t 3KZI_T 3PRQ_T 3BZ2_T 3PRR_T 4FBY_g 3A0H_t 3A0B_T ....
Probab=20.60 E-value=1.8e+02 Score=18.33 Aligned_cols=19 Identities=32% Similarity=0.588 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024062 6 PEYVVALATIVGSVLFSIF 24 (273)
Q Consensus 6 ~~f~i~~l~~iG~~lfv~y 24 (273)
.+|+.-+.+.+|.++|.++
T Consensus 4 ~vY~~ll~~tlgilffAI~ 22 (29)
T PF01405_consen 4 LVYTFLLIGTLGILFFAIF 22 (29)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhh
Confidence 4788888999999999876
No 300
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=20.54 E-value=1.3e+02 Score=22.85 Aligned_cols=20 Identities=20% Similarity=0.222 Sum_probs=15.4
Q ss_pred HHhhhhhhhhhHHHHhhccc
Q 024062 23 IFGGVGIACLPLGLIFSFIR 42 (273)
Q Consensus 23 ~y~gvGlaalPi~LI~~f~~ 42 (273)
+++.+=|+..|+=+|.++.+
T Consensus 22 Fl~~vll~LtPlfiisa~lS 41 (74)
T PF15086_consen 22 FLTTVLLILTPLFIISAVLS 41 (74)
T ss_pred HHHHHHHHHhHHHHHHHHHH
Confidence 45566678889999988766
No 301
>PLN02764 glycosyltransferase family protein
Probab=20.41 E-value=2.6e+02 Score=28.06 Aligned_cols=53 Identities=11% Similarity=0.036 Sum_probs=26.4
Q ss_pred cChHHHHHHHHHHH----HHHHHHHHHHHHHHhhhccCCcChHhHHHHHHHHHHHHHHHH
Q 024062 48 ITRSQYIKEATELG----KKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEE 103 (273)
Q Consensus 48 is~~~~~~~~~~i~----~~~~~l~e~~~~l~~~~~~~~~~~k~rr~~~~l~~~~~~Le~ 103 (273)
+++++.++.-.++- ++.++.+++.++++++-++++.|. +++++|-++...+.+
T Consensus 392 ~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~~~~GSS~---~~l~~lv~~~~~~~~ 448 (453)
T PLN02764 392 FSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETLASPGLLT---GYVDNFIESLQDLVS 448 (453)
T ss_pred cCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhcCCHH---HHHHHHHHHHHHhcc
Confidence 56666555222222 334556666666665554443322 366666655555443
No 302
>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th
Probab=20.35 E-value=4.2e+02 Score=23.80 Aligned_cols=21 Identities=19% Similarity=0.129 Sum_probs=8.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 024062 87 WRKNVKSVEKELLQLEEDVKL 107 (273)
Q Consensus 87 ~rr~~~~l~~~~~~Le~~~~~ 107 (273)
|..++.+-++++..-.++++.
T Consensus 137 de~KL~kae~el~~Ak~~Ye~ 157 (211)
T cd07588 137 DDQKLTKAEEELQQAKKVYEE 157 (211)
T ss_pred cHhhHHHHHHHHHHHHHHHHH
Confidence 333444444444444444433
No 303
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=20.30 E-value=3.5e+02 Score=29.76 Aligned_cols=27 Identities=19% Similarity=0.235 Sum_probs=17.8
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 024062 85 RKWRKNVKSVEKELLQLEEDVKLLEEM 111 (273)
Q Consensus 85 ~k~rr~~~~l~~~~~~Le~~~~~le~~ 111 (273)
.+-|+|+..+..++..|++....+..+
T Consensus 497 e~l~~El~~l~~e~~~lq~~~~~~~qs 523 (980)
T KOG0980|consen 497 ESLRQELALLLIELEELQRTLSNLAQS 523 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 567777777777777777765544444
No 304
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=20.21 E-value=2.8e+02 Score=26.48 Aligned_cols=10 Identities=30% Similarity=0.332 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 024062 59 ELGKKARELK 68 (273)
Q Consensus 59 ~i~~~~~~l~ 68 (273)
.+.+++.++.
T Consensus 10 ~~~~~~r~l~ 19 (378)
T TIGR01554 10 EIVAEIRSLL 19 (378)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 305
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=20.03 E-value=3.7e+02 Score=26.39 Aligned_cols=21 Identities=29% Similarity=0.596 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024062 89 KNVKSVEKELLQLEEDVKLLE 109 (273)
Q Consensus 89 r~~~~l~~~~~~Le~~~~~le 109 (273)
.+.+++++|+..++++.+++.
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~ 63 (398)
T PTZ00454 43 EEQKNLKRELIRAKEEVKRIQ 63 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 344555556666666655553
No 306
>PF07028 DUF1319: Protein of unknown function (DUF1319); InterPro: IPR010746 This entry is represented by Commelina yellow mottle virus, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains a number of viral proteins of unknown function approximately 200 residues long. Family members seem to be restricted to badnaviruses.
Probab=20.01 E-value=3.9e+02 Score=22.42 Aligned_cols=61 Identities=23% Similarity=0.354 Sum_probs=32.6
Q ss_pred cChHHHHH------HHHHHHHHHHHHHHHHHHHHhhhccCCcChHhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024062 48 ITRSQYIK------EATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMY 112 (273)
Q Consensus 48 is~~~~~~------~~~~i~~~~~~l~e~~~~l~~~~~~~~~~~k~rr~~~~l~~~~~~Le~~~~~le~~y 112 (273)
+|.++++. .+..+..++ ++.+..+.+++-. +.-+..|.++..++.+...|+++.+.|...|
T Consensus 17 ~s~~dLahNL~v~~~R~dL~~KV-~~~~~~~~lk~~~---ki~~~Qr~~l~~l~~~l~~l~~eL~~Lr~~~ 83 (126)
T PF07028_consen 17 VSNSDLAHNLRVTCYRSDLGSKV-SQKKLLEELKNLS---KIQESQRSELKELKQELDVLSKELQALRKEY 83 (126)
T ss_pred CcHHHHHhhhhhhhhHhhHHHHH-HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555532 455555555 3333333343211 1123456667777777777777777766654
No 307
>PF13256 DUF4047: Domain of unknown function (DUF4047)
Probab=20.01 E-value=5e+02 Score=21.67 Aligned_cols=30 Identities=20% Similarity=0.379 Sum_probs=16.4
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 024062 85 RKWRKNVKSVEKELLQLEEDVKLLEEMYPQ 114 (273)
Q Consensus 85 ~k~rr~~~~l~~~~~~Le~~~~~le~~y~~ 114 (273)
.+|++...++..|...|.+=+..+|.-|++
T Consensus 67 ~~w~~~rEki~~e~eaLQ~IY~eie~~ynq 96 (125)
T PF13256_consen 67 VEWKQGREKIVAEREALQNIYTEIEDYYNQ 96 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456665555555555555555555444443
Done!