Query 024062
Match_columns 273
No_of_seqs 108 out of 131
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 17:32:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024062.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024062hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2w6a_A ARF GTPase-activating p 86.6 1.9 6.6E-05 30.4 6.0 36 33-75 2-40 (63)
2 2yy0_A C-MYC-binding protein; 85.2 1.1 3.9E-05 30.8 4.2 44 33-77 3-48 (53)
3 3s9g_A Protein hexim1; cyclin 75.2 18 0.00061 28.0 8.3 57 48-110 30-86 (104)
4 3rvy_A ION transport protein; 74.4 1.6 5.5E-05 38.5 2.7 24 20-43 218-241 (285)
5 3pjs_K KCSA, voltage-gated pot 74.2 3 0.0001 34.3 4.2 24 21-44 100-123 (166)
6 3hd7_A Vesicle-associated memb 71.6 29 0.00099 25.9 11.2 25 52-76 13-37 (91)
7 3b5x_A Lipid A export ATP-bind 69.6 84 0.0029 30.4 18.3 12 27-38 170-181 (582)
8 3eff_K Voltage-gated potassium 68.9 7.3 0.00025 30.7 5.2 22 20-41 72-93 (139)
9 3b60_A Lipid A export ATP-bind 66.0 99 0.0034 29.9 14.7 31 7-37 145-180 (582)
10 3he5_B Synzip2; heterodimeric 62.2 10 0.00035 25.1 3.9 25 87-111 8-32 (52)
11 2f23_A Anti-cleavage anti-GREA 61.6 47 0.0016 26.9 8.9 62 48-109 7-73 (156)
12 4h22_A Leucine-rich repeat fli 59.5 22 0.00077 27.6 6.1 69 48-116 16-85 (103)
13 1rh5_B Preprotein translocase 58.3 20 0.00067 26.2 5.3 67 92-162 6-72 (74)
14 2kog_A Vesicle-associated memb 57.4 15 0.00052 28.9 5.0 24 53-76 42-65 (119)
15 2lw1_A ABC transporter ATP-bin 56.9 16 0.00056 27.0 4.9 56 56-111 23-78 (89)
16 4f4c_A Multidrug resistance pr 56.3 2.2E+02 0.0075 30.7 17.4 36 6-41 215-255 (1321)
17 1go4_E MAD1 (mitotic arrest de 55.4 25 0.00084 27.2 5.7 63 48-110 9-96 (100)
18 1lrz_A FEMA, factor essential 53.5 47 0.0016 30.9 8.5 53 57-109 249-301 (426)
19 4dzo_A Mitotic spindle assembl 52.3 13 0.00043 29.6 3.7 28 89-116 4-31 (123)
20 2yl4_A ATP-binding cassette SU 51.8 1.7E+02 0.0059 28.2 18.2 12 27-38 167-178 (595)
21 3oja_B Anopheles plasmodium-re 51.6 29 0.00099 33.2 6.9 26 86-111 555-580 (597)
22 3qf4_B Uncharacterized ABC tra 49.0 1.9E+02 0.0066 28.0 12.5 33 7-39 157-194 (598)
23 2l5g_B Putative uncharacterize 48.8 28 0.00097 22.7 4.3 17 87-103 21-37 (42)
24 2dq0_A Seryl-tRNA synthetase; 45.9 87 0.003 29.9 9.2 58 54-111 37-98 (455)
25 3kdq_A Uncharacterized conserv 45.6 91 0.0031 25.6 8.1 64 48-111 77-150 (154)
26 2bni_A General control protein 44.9 17 0.00058 22.7 2.6 22 56-77 2-23 (34)
27 1yzm_A FYVE-finger-containing 44.8 34 0.0012 23.2 4.4 21 90-110 29-49 (51)
28 3qne_A Seryl-tRNA synthetase, 44.3 91 0.0031 30.2 9.1 57 55-111 40-100 (485)
29 3hnw_A Uncharacterized protein 43.6 1.2E+02 0.0043 24.2 8.7 26 86-111 107-132 (138)
30 3oja_B Anopheles plasmodium-re 43.2 83 0.0028 30.0 8.7 11 93-103 541-551 (597)
31 1ic2_A Tropomyosin alpha chain 42.8 72 0.0025 23.0 6.4 56 56-111 7-63 (81)
32 1z0k_B FYVE-finger-containing 42.3 25 0.00087 25.4 3.6 21 90-110 47-67 (69)
33 2lw1_A ABC transporter ATP-bin 42.1 99 0.0034 22.6 9.1 30 83-112 16-45 (89)
34 1ses_A Seryl-tRNA synthetase; 42.0 99 0.0034 29.1 8.8 55 55-111 35-93 (421)
35 2oxj_A Hybrid alpha/beta pepti 41.5 23 0.00078 22.1 2.8 22 56-77 2-23 (34)
36 3twe_A Alpha4H; unknown functi 41.4 36 0.0012 19.6 3.5 15 65-79 11-25 (27)
37 3zbh_A ESXA; unknown function, 41.2 59 0.002 23.1 5.8 69 48-116 9-90 (99)
38 3mky_B Protein SOPB; partition 40.3 25 0.00087 30.0 4.0 48 26-75 62-109 (189)
39 2dq3_A Seryl-tRNA synthetase; 40.1 87 0.003 29.5 8.1 23 54-76 36-58 (425)
40 4ioe_A Secreted protein ESXB; 38.8 1E+02 0.0034 21.7 8.1 31 48-78 9-39 (93)
41 3fav_B ESAT-6, 6 kDa early sec 38.5 1E+02 0.0035 21.8 7.4 71 48-118 5-88 (94)
42 4i0x_B ESAT-6-like protein MAB 38.4 86 0.0029 23.1 6.4 34 85-118 63-96 (103)
43 3vou_A ION transport 2 domain 38.1 91 0.0031 24.5 6.9 15 25-39 89-103 (148)
44 3efg_A Protein SLYX homolog; x 37.3 92 0.0031 22.6 6.1 58 48-111 7-64 (78)
45 4h33_A LMO2059 protein; bilaye 36.5 20 0.0007 28.3 2.7 25 20-44 75-99 (137)
46 3c3f_A Alpha/beta peptide with 36.4 31 0.001 21.5 2.8 22 56-77 2-23 (34)
47 4a82_A Cystic fibrosis transme 35.6 3.1E+02 0.01 26.4 16.7 31 9-39 143-178 (578)
48 3na7_A HP0958; flagellar bioge 35.5 94 0.0032 27.0 7.1 22 89-110 90-111 (256)
49 1lq7_A Alpha3W; three helix bu 35.4 25 0.00085 24.3 2.5 12 93-104 52-63 (67)
50 2p4v_A Transcription elongatio 34.4 84 0.0029 25.6 6.2 62 48-109 6-73 (158)
51 3sjb_C Golgi to ER traffic pro 34.2 1.5E+02 0.0051 22.5 7.0 26 85-110 52-77 (93)
52 1ez3_A Syntaxin-1A; three heli 33.7 1.4E+02 0.0047 22.5 7.1 63 52-114 51-120 (127)
53 1z0j_B FYVE-finger-containing 33.5 48 0.0017 23.2 3.8 22 90-111 36-57 (59)
54 2d1l_A Metastasis suppressor p 33.3 1.1E+02 0.0039 27.0 7.3 25 52-76 132-156 (253)
55 3onj_A T-snare VTI1; helix, HA 33.3 1.1E+02 0.0039 22.7 6.3 55 56-110 35-94 (97)
56 3lay_A Zinc resistance-associa 33.2 89 0.003 26.1 6.2 22 86-107 110-131 (175)
57 2vs0_A Virulence factor ESXA; 32.2 1.3E+02 0.0045 21.1 9.1 70 48-117 6-88 (97)
58 3u1c_A Tropomyosin alpha-1 cha 31.8 1.5E+02 0.005 22.3 6.8 20 90-109 45-64 (101)
59 1vcs_A Vesicle transport throu 31.0 1.7E+02 0.0057 22.0 8.5 55 57-111 40-96 (102)
60 3m48_A General control protein 30.7 36 0.0012 21.1 2.4 20 57-76 2-21 (33)
61 3fav_A ESAT-6-like protein ESX 30.7 1.5E+02 0.0052 21.3 8.0 71 48-118 7-90 (101)
62 3v1a_A Computational design, M 30.5 71 0.0024 21.4 4.1 18 90-107 28-45 (48)
63 1s94_A S-syntaxin; three helix 30.1 2.2E+02 0.0075 23.0 8.2 68 50-117 80-154 (180)
64 2w83_C C-JUN-amino-terminal ki 29.6 1.7E+02 0.0057 21.5 6.9 55 51-111 19-73 (77)
65 3hnw_A Uncharacterized protein 29.3 2.2E+02 0.0074 22.7 8.3 22 89-110 103-124 (138)
66 2akf_A Coronin-1A; coiled coil 29.2 91 0.0031 18.8 4.0 21 90-110 7-27 (32)
67 1wle_A Seryl-tRNA synthetase; 29.2 99 0.0034 30.0 6.6 23 89-111 123-145 (501)
68 3c3g_A Alpha/beta peptide with 29.2 48 0.0016 20.5 2.8 21 57-77 2-22 (33)
69 3v86_A De novo design helix; c 29.0 81 0.0028 18.2 3.6 19 89-107 7-25 (27)
70 2p22_C Protein SRN2; endosome, 28.7 1.4E+02 0.0048 25.3 6.8 25 91-115 130-154 (192)
71 3q8t_A Beclin-1; autophagy, AT 28.7 1.8E+02 0.0063 21.7 8.4 22 89-110 60-81 (96)
72 1kd8_B GABH BLL, GCN4 acid bas 28.4 49 0.0017 20.8 2.8 20 57-76 3-22 (36)
73 3u59_A Tropomyosin beta chain; 27.8 1.9E+02 0.0064 21.6 6.8 18 90-107 45-62 (101)
74 1l4a_A Synaptobrevin; snare, s 27.7 1.7E+02 0.0058 21.0 6.5 25 52-76 23-47 (80)
75 4i0x_A ESAT-6-like protein MAB 27.6 1.7E+02 0.0059 21.0 7.0 67 52-118 4-83 (94)
76 2lf0_A Uncharacterized protein 27.5 1.2E+02 0.004 24.2 5.5 27 85-111 32-58 (123)
77 1sfc_A VAMP 2, protein (synapt 27.4 1.9E+02 0.0066 21.5 7.2 23 54-76 40-62 (96)
78 1uo4_A General control protein 26.6 51 0.0018 20.5 2.6 21 57-77 3-23 (34)
79 1t3j_A Mitofusin 1; coiled coi 26.3 2.1E+02 0.0073 21.7 8.2 23 89-111 71-93 (96)
80 1v74_B Colicin D immunity prot 26.1 1.6E+02 0.0056 21.9 5.9 27 34-63 7-33 (87)
81 2v66_B Nuclear distribution pr 25.8 2.1E+02 0.0072 22.2 6.8 20 92-111 52-71 (111)
82 2qyw_A Vesicle transport throu 25.4 2.2E+02 0.0074 21.4 6.8 16 89-104 85-100 (102)
83 1a92_A Delta antigen; leucine 25.3 1.3E+02 0.0043 20.2 4.6 24 88-111 13-36 (50)
84 3sja_C Golgi to ER traffic pro 25.1 1.9E+02 0.0063 20.5 7.2 18 86-103 36-53 (65)
85 3bhp_A UPF0291 protein YNZC; N 24.5 1E+02 0.0036 21.5 4.3 33 66-98 5-37 (60)
86 2jee_A YIIU; FTSZ, septum, coi 24.1 1.6E+02 0.0056 21.7 5.5 54 58-111 9-63 (81)
87 2yy0_A C-MYC-binding protein; 23.9 1.1E+02 0.0036 20.7 4.1 26 86-111 23-48 (53)
88 1grj_A GREA protein; transcrip 23.8 2.8E+02 0.0097 22.2 8.1 62 48-109 6-73 (158)
89 4f4c_A Multidrug resistance pr 23.6 7E+02 0.024 26.7 13.0 37 5-41 874-915 (1321)
90 3arc_T Photosystem II reaction 23.6 87 0.003 19.3 3.2 19 6-24 4-22 (32)
91 2l16_A SEC-independent protein 23.6 1.8E+02 0.0063 21.0 5.7 45 55-103 28-72 (78)
92 1taf_B TFIID TBP associated fa 23.0 1.5E+02 0.005 21.2 4.9 60 27-87 2-63 (70)
93 2wq1_A General control protein 22.5 75 0.0026 19.6 2.8 20 57-76 2-21 (33)
94 1urq_A M-tomosyn isoform; tran 22.5 2E+02 0.0068 19.9 6.7 24 53-76 13-36 (63)
95 2jvd_A UPF0291 protein YNZC; s 22.4 1.3E+02 0.0043 20.6 4.3 32 66-97 5-36 (54)
96 3g9w_C Integrin beta-1D; prote 22.4 44 0.0015 22.6 1.9 14 85-98 8-21 (52)
97 1ezj_A Nucleocapsid phosphopro 22.3 1.9E+02 0.0066 22.3 5.7 29 87-117 71-99 (115)
98 1txp_A HnRNP C, heterogeneous 22.0 84 0.0029 18.7 2.8 22 54-75 5-26 (28)
99 2f95_B Sensory rhodopsin II tr 21.8 47 0.0016 25.3 2.3 17 94-110 128-144 (163)
100 1a93_B MAX protein, coiled coi 21.6 1.4E+02 0.0047 18.6 3.9 23 88-110 6-28 (34)
101 3bbp_D GRIP and coiled-coil do 21.5 43 0.0015 24.2 1.8 17 90-106 51-67 (71)
102 3vp9_A General transcriptional 21.4 88 0.003 23.7 3.6 25 89-113 50-74 (92)
103 2oqq_A Transcription factor HY 21.3 1.6E+02 0.0056 19.1 4.4 21 55-75 10-30 (42)
104 4dyl_A Tyrosine-protein kinase 20.6 4.3E+02 0.015 24.2 9.1 68 52-119 317-396 (406)
No 1
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=86.58 E-value=1.9 Score=30.43 Aligned_cols=36 Identities=31% Similarity=0.451 Sum_probs=22.9
Q ss_pred hHHHHhhcccCCCcccChHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 024062 33 PLGLIFSFIRRPKAVITRSQYIKEATELG---KKARELKKAADTLH 75 (273)
Q Consensus 33 Pi~LI~~f~~Rpk~~is~~~~~~~~~~i~---~~~~~l~e~~~~l~ 75 (273)
|+|+--+ | |+-.||-|-|+.+. .|.++|+..-..+.
T Consensus 2 ~~dlsDg------p-it~qeylevK~ALaaSeAkiQQLmkVN~~ls 40 (63)
T 2w6a_A 2 PLGSSDG------A-VTLQEYLELKKALATSEAKVQQLMKVNSSLS 40 (63)
T ss_dssp CCC--CC------S-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccCC------c-chHHHHHHHHHHHHhhHHHHHHHHHHhHhhh
Confidence 5666655 4 99999988777765 45556665555554
No 2
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=85.22 E-value=1.1 Score=30.77 Aligned_cols=44 Identities=14% Similarity=0.182 Sum_probs=22.7
Q ss_pred hHHHHhhccc--CCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024062 33 PLGLIFSFIR--RPKAVITRSQYIKEATELGKKARELKKAADTLHQE 77 (273)
Q Consensus 33 Pi~LI~~f~~--Rpk~~is~~~~~~~~~~i~~~~~~l~e~~~~l~~~ 77 (273)
|+|+|+...+ -|.. .+.+.+..+..++..+.++|.++-++++++
T Consensus 3 AlefIk~~LG~~~p~~-~d~eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 3 ALDFLKHHLGAATPEN-PEIELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp -------------CCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999888 7765 555566667777777777777777777653
No 3
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=75.23 E-value=18 Score=28.00 Aligned_cols=57 Identities=25% Similarity=0.348 Sum_probs=42.5
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcChHhHHHHHHHHHHHHHHHHHHHHHHH
Q 024062 48 ITRSQYIKEATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEE 110 (273)
Q Consensus 48 is~~~~~~~~~~i~~~~~~l~e~~~~l~~~~~~~~~~~k~rr~~~~l~~~~~~Le~~~~~le~ 110 (273)
+|++++.++=.+++++...+.+..+.++.... ..-.++..+..|++.|.++...|..
T Consensus 30 mSKqELIqEYl~LE~~~s~le~e~~rlr~~~~------~~~~~v~eLe~everL~~ENq~L~~ 86 (104)
T 3s9g_A 30 MSKQELIKEYLELEKSLSRMEDENNRLRLESK------RLDARVRELELELDRLRAENLQLLT 86 (104)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------cchhhHHHHHHHHHHHHHHHHHHHH
Confidence 78888888888888888888888888876532 2235777888888888887666543
No 4
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=74.45 E-value=1.6 Score=38.47 Aligned_cols=24 Identities=8% Similarity=0.007 Sum_probs=18.5
Q ss_pred HHHHHhhhhhhhhhHHHHhhcccC
Q 024062 20 LFSIFGGVGIACLPLGLIFSFIRR 43 (273)
Q Consensus 20 lfv~y~gvGlaalPi~LI~~f~~R 43 (273)
.|++.+|+++.++|+..|-+...+
T Consensus 218 ~~~~i~~~~~lnl~~aii~~~f~~ 241 (285)
T 3rvy_A 218 PFIFVVTFVMINLVVAICVDAMAI 241 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778999999999999886653
No 5
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=74.24 E-value=3 Score=34.26 Aligned_cols=24 Identities=8% Similarity=0.117 Sum_probs=17.9
Q ss_pred HHHHhhhhhhhhhHHHHhhcccCC
Q 024062 21 FSIFGGVGIACLPLGLIFSFIRRP 44 (273)
Q Consensus 21 fv~y~gvGlaalPi~LI~~f~~Rp 44 (273)
+....|+++.+++++.+-+...++
T Consensus 100 ~~~l~G~~~~~~~~~~i~~~~~~~ 123 (166)
T 3pjs_K 100 VVMVAGITSFGLVTAALATWFVGQ 123 (166)
T ss_dssp HHHHHHHHHHHHHHTTSSSSSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445578888999999888866543
No 6
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=71.60 E-value=29 Score=25.88 Aligned_cols=25 Identities=8% Similarity=0.041 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 024062 52 QYIKEATELGKKARELKKAADTLHQ 76 (273)
Q Consensus 52 ~~~~~~~~i~~~~~~l~e~~~~l~~ 76 (273)
|..|.+....+-.++++|+|+.|+.
T Consensus 13 ev~evk~iM~~NI~kvL~RgekL~~ 37 (91)
T 3hd7_A 13 QVDEVVDIMRVNVDKVLERDQKLSE 37 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccchHHH
Confidence 3445555555556666666666654
No 7
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=69.63 E-value=84 Score=30.40 Aligned_cols=12 Identities=25% Similarity=0.155 Sum_probs=6.0
Q ss_pred hhhhhhhHHHHh
Q 024062 27 VGIACLPLGLIF 38 (273)
Q Consensus 27 vGlaalPi~LI~ 38 (273)
+.++.+|+-.+-
T Consensus 170 i~l~~~~l~~~~ 181 (582)
T 3b5x_A 170 VLIVVAPVVAFA 181 (582)
T ss_pred HHHHHHHHHHHH
Confidence 344555655543
No 8
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=68.88 E-value=7.3 Score=30.74 Aligned_cols=22 Identities=9% Similarity=0.203 Sum_probs=16.2
Q ss_pred HHHHHhhhhhhhhhHHHHhhcc
Q 024062 20 LFSIFGGVGIACLPLGLIFSFI 41 (273)
Q Consensus 20 lfv~y~gvGlaalPi~LI~~f~ 41 (273)
.+....|+++.+++++.+-+..
T Consensus 72 ~~~~~~G~~~~~~~~~~i~~~~ 93 (139)
T 3eff_K 72 VVVMVAGITSFGLVTAALATWF 93 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445678888899998888744
No 9
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=65.97 E-value=99 Score=29.88 Aligned_cols=31 Identities=19% Similarity=0.271 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHhh-----hhhhhhhHHHH
Q 024062 7 EYVVALATIVGSVLFSIFGG-----VGIACLPLGLI 37 (273)
Q Consensus 7 ~f~i~~l~~iG~~lfv~y~g-----vGlaalPi~LI 37 (273)
..+.+++.+++.+..+++.. +.++.+|+-.+
T Consensus 145 ~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~ 180 (582)
T 3b60_A 145 TVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSI 180 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34444555555554444432 33444555444
No 10
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=62.17 E-value=10 Score=25.10 Aligned_cols=25 Identities=40% Similarity=0.583 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Q 024062 87 WRKNVKSVEKELLQLEEDVKLLEEM 111 (273)
Q Consensus 87 ~rr~~~~l~~~~~~Le~~~~~le~~ 111 (273)
-|+++.++++.--+||||++.+|..
T Consensus 8 lrkkiarlkkdnlqlerdeqnleki 32 (52)
T 3he5_B 8 LRKKIARLKKDNLQLERDEQNLEKI 32 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhhhHhhHHHH
Confidence 3455555555555666665555543
No 11
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=61.56 E-value=47 Score=26.92 Aligned_cols=62 Identities=16% Similarity=0.219 Sum_probs=41.2
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcCh-----HhHHHHHHHHHHHHHHHHHHHHHH
Q 024062 48 ITRSQYIKEATELGKKARELKKAADTLHQEERSGSKGR-----KWRKNVKSVEKELLQLEEDVKLLE 109 (273)
Q Consensus 48 is~~~~~~~~~~i~~~~~~l~e~~~~l~~~~~~~~~~~-----k~rr~~~~l~~~~~~Le~~~~~le 109 (273)
+|..-|.+.+.+++.+..+.-+..+.++.....|-++. -.|++...+.+..+.|+++.+.++
T Consensus 7 ~T~~g~~~L~~el~~~~~~r~~~~~~i~~A~~~GDlsEnaey~aak~~q~~~e~ri~~L~~~L~~a~ 73 (156)
T 2f23_A 7 LTKAGYERLMQQLERERERLQEATKILQELMESSDDYDDSGLEAAKQEKARIEARIDSLEDILSRAV 73 (156)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCSCSHHHHHHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 89999999999999877777888888886555444321 123445555566666666655543
No 12
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=59.48 E-value=22 Score=27.57 Aligned_cols=69 Identities=16% Similarity=0.113 Sum_probs=41.0
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcChHh-HHHHHHHHHHHHHHHHHHHHHHHhcccCc
Q 024062 48 ITRSQYIKEATELGKKARELKKAADTLHQEERSGSKGRKW-RKNVKSVEKELLQLEEDVKLLEEMYPQGE 116 (273)
Q Consensus 48 is~~~~~~~~~~i~~~~~~l~e~~~~l~~~~~~~~~~~k~-rr~~~~l~~~~~~Le~~~~~le~~y~~~~ 116 (273)
+|.+|+..+|+.+.=.++-|++.-+..+....+-.+.-++ .|+++++++....|..+...+.....+.+
T Consensus 16 VsnAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~qRD 85 (103)
T 4h22_A 16 VSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQRE 85 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667776677776666666666665555432222111122 25677777777777777777766544443
No 13
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=58.27 E-value=20 Score=26.21 Aligned_cols=67 Identities=22% Similarity=0.336 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 024062 92 KSVEKELLQLEEDVKLLEEMYPQGEKAETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHP 162 (273)
Q Consensus 92 ~~l~~~~~~Le~~~~~le~~y~~~~~~~~~~~~~~l~~~~kLl~Gii~lllSi~w~i~iil~~i~k~~~~~ 162 (273)
+++.+..++.-+|.+++-..-++.+..|..- ..-.--.+-++.|+++.++-+ +|+.+.++.+||..|
T Consensus 6 ~~~~e~~~~f~kd~~rvlk~~~KPdr~EF~~-iak~~~iG~~imG~IGfiIkl---i~ipIn~ii~~~~~~ 72 (74)
T 1rh5_B 6 NQKIEQLKEFIEECRRVWLVLKKPTKDEYLA-VAKVTALGISLLGIIGYIIHV---PATYIKGILKPPTTP 72 (74)
T ss_dssp ------CCHHHHHHHHHHHSEECCCHHHHHH-HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHH---HHHHHhcccCCCCCC
Confidence 3444455555555555544434444333200 011113355667777776654 788999999986554
No 14
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=57.35 E-value=15 Score=28.94 Aligned_cols=24 Identities=4% Similarity=0.005 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 024062 53 YIKEATELGKKARELKKAADTLHQ 76 (273)
Q Consensus 53 ~~~~~~~i~~~~~~l~e~~~~l~~ 76 (273)
..|.+....+-.++++|+|+.|+.
T Consensus 42 vdeVk~IM~~NIdkvLeRGEkLd~ 65 (119)
T 2kog_A 42 VDEVVDIMRVNVDKVLERDQKLSE 65 (119)
T ss_dssp HHHHHHHHHHHHHHHHCCCCSSCC
T ss_pred HHHHHHHHHHHHHHHHHcccHHHH
Confidence 344444444445555555555544
No 15
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=56.95 E-value=16 Score=26.96 Aligned_cols=56 Identities=14% Similarity=0.139 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCcChHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 024062 56 EATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEM 111 (273)
Q Consensus 56 ~~~~i~~~~~~l~e~~~~l~~~~~~~~~~~k~rr~~~~l~~~~~~Le~~~~~le~~ 111 (273)
+-..|..+..++-++...|+..-.....-.+|-.++..+..+...++.+.+.+.+.
T Consensus 23 Ele~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~er 78 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFER 78 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777778888888887755444433345567777777777777776666654
No 16
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=56.28 E-value=2.2e+02 Score=30.68 Aligned_cols=36 Identities=14% Similarity=0.160 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHH-----hhhhhhhhhHHHHhhcc
Q 024062 6 PEYVVALATIVGSVLFSIF-----GGVGIACLPLGLIFSFI 41 (273)
Q Consensus 6 ~~f~i~~l~~iG~~lfv~y-----~gvGlaalPi~LI~~f~ 41 (273)
+..+.+++++++.+...++ +.+.++.+|+-.+-...
T Consensus 215 ~~~~~~~~~~i~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~ 255 (1321)
T 4f4c_A 215 GMAFQYLSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFA 255 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666555554 34566777877665543
No 17
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=55.44 E-value=25 Score=27.17 Aligned_cols=63 Identities=16% Similarity=0.257 Sum_probs=37.1
Q ss_pred cChHHHHH---HHHHHHHHHHHHHHHHHHHHhhhcc----CCc------------C------hHhHHHHHHHHHHHHHHH
Q 024062 48 ITRSQYIK---EATELGKKARELKKAADTLHQEERS----GSK------------G------RKWRKNVKSVEKELLQLE 102 (273)
Q Consensus 48 is~~~~~~---~~~~i~~~~~~l~e~~~~l~~~~~~----~~~------------~------~k~rr~~~~l~~~~~~Le 102 (273)
.|..+|.. +-.++.+..++|+++-+.|+.+-.. |.- + ...++++.+|+.|...|.
T Consensus 9 ~~~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr 88 (100)
T 1go4_E 9 FSREEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLR 88 (100)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667755 4444557777777777777752211 210 1 123457777777777777
Q ss_pred HHHHHHHH
Q 024062 103 EDVKLLEE 110 (273)
Q Consensus 103 ~~~~~le~ 110 (273)
++.+.+++
T Consensus 89 ~~v~~lEe 96 (100)
T 1go4_E 89 GLLRAMER 96 (100)
T ss_dssp HHHTTCC-
T ss_pred HHHHHHhc
Confidence 77766655
No 18
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=53.46 E-value=47 Score=30.88 Aligned_cols=53 Identities=13% Similarity=0.167 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCcChHhHHHHHHHHHHHHHHHHHHHHHH
Q 024062 57 ATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLE 109 (273)
Q Consensus 57 ~~~i~~~~~~l~e~~~~l~~~~~~~~~~~k~rr~~~~l~~~~~~Le~~~~~le 109 (273)
.+.++++.+++.++..+++++-.+...+.|.+++++.++++...+|++...++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 301 (426)
T 1lrz_A 249 IKELNEERDILNKDLNKALKDIEKRPENKKAHNKRDNLQQQLDANEQKIEEGK 301 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455566666666655333333356777888888888888877766654
No 19
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=52.31 E-value=13 Score=29.65 Aligned_cols=28 Identities=21% Similarity=0.277 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCc
Q 024062 89 KNVKSVEKELLQLEEDVKLLEEMYPQGE 116 (273)
Q Consensus 89 r~~~~l~~~~~~Le~~~~~le~~y~~~~ 116 (273)
+|++.+++++..+|.+.++|.+.|++..
T Consensus 4 ~e~~~l~~qi~~~ekr~~RLKevF~~ks 31 (123)
T 4dzo_A 4 KEVAELKKQVESAELKNQRLKEVFQTKI 31 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888888888888888866554
No 20
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=51.78 E-value=1.7e+02 Score=28.20 Aligned_cols=12 Identities=17% Similarity=0.207 Sum_probs=6.0
Q ss_pred hhhhhhhHHHHh
Q 024062 27 VGIACLPLGLIF 38 (273)
Q Consensus 27 vGlaalPi~LI~ 38 (273)
+.++.+|+-.+-
T Consensus 167 i~l~~~~l~~~~ 178 (595)
T 2yl4_A 167 FVLSVVPPVSII 178 (595)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344556655443
No 21
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=51.59 E-value=29 Score=33.25 Aligned_cols=26 Identities=23% Similarity=0.191 Sum_probs=16.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHh
Q 024062 86 KWRKNVKSVEKELLQLEEDVKLLEEM 111 (273)
Q Consensus 86 k~rr~~~~l~~~~~~Le~~~~~le~~ 111 (273)
+.+++..++++|...++++.+++++.
T Consensus 555 ~~~~~~~~l~~e~~~~~~~~~~l~~~ 580 (597)
T 3oja_B 555 NKRAKQAELRQETSLKRQKVKQLEAK 580 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666667777777777777766
No 22
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=49.00 E-value=1.9e+02 Score=27.98 Aligned_cols=33 Identities=18% Similarity=0.477 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHH-----hhhhhhhhhHHHHhh
Q 024062 7 EYVVALATIVGSVLFSIF-----GGVGIACLPLGLIFS 39 (273)
Q Consensus 7 ~f~i~~l~~iG~~lfv~y-----~gvGlaalPi~LI~~ 39 (273)
..+.+++.+++.+.++++ +-+.++.+|+-++-.
T Consensus 157 ~~~~~~~~~i~~~~~l~~~~~~l~l~~l~~~~l~~~~~ 194 (598)
T 3qf4_B 157 QFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLIT 194 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555554443 334555666655443
No 23
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=48.82 E-value=28 Score=22.74 Aligned_cols=17 Identities=29% Similarity=0.421 Sum_probs=7.7
Q ss_pred hHHHHHHHHHHHHHHHH
Q 024062 87 WRKNVKSVEKELLQLEE 103 (273)
Q Consensus 87 ~rr~~~~l~~~~~~Le~ 103 (273)
.+.+++.++...+.||+
T Consensus 21 te~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 21 VEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444443
No 24
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=45.90 E-value=87 Score=29.86 Aligned_cols=58 Identities=17% Similarity=0.192 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh----ccCCcChHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 024062 54 IKEATELGKKARELKKAADTLHQEE----RSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEM 111 (273)
Q Consensus 54 ~~~~~~i~~~~~~l~e~~~~l~~~~----~~~~~~~k~rr~~~~l~~~~~~Le~~~~~le~~ 111 (273)
.+++.++..+.++++.+..++.++- +++.....-+.+.+.++.++..||++.+.+++.
T Consensus 37 ~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 98 (455)
T 2dq0_A 37 DTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKK 98 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355566666666666665555421 112212233455566666666666666655554
No 25
>3kdq_A Uncharacterized conserved protein; functionally unknown protein,corynebacterium diphtheriae, structural genomics, PSI-2; 3.00A {Corynebacterium diphtheriae}
Probab=45.62 E-value=91 Score=25.55 Aligned_cols=64 Identities=27% Similarity=0.271 Sum_probs=42.9
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccCCc---------ChHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 024062 48 ITRSQYIKEATELGKKARELKKAADTLHQEE-RSGSK---------GRKWRKNVKSVEKELLQLEEDVKLLEEM 111 (273)
Q Consensus 48 is~~~~~~~~~~i~~~~~~l~e~~~~l~~~~-~~~~~---------~~k~rr~~~~l~~~~~~Le~~~~~le~~ 111 (273)
.|-.|..+++..+..+...+.+.+..=..+. +.++. -.+.|++.+++.++.|.|+..-+.+.+.
T Consensus 77 ~tl~eaia~rd~L~~~~~~l~~~~~~a~~~~~rys~sEIk~vs~vdv~~~qk~ad~l~k~~r~Ld~~IQ~~Nw~ 150 (154)
T 3kdq_A 77 MTLADALSVRDALLKKRTLYSDLADQLTSRQDRYSRSEIKYVATMDAREIRKKADLAAKEYRQLDVDIQRLNWQ 150 (154)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSTTSCCEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhheeccCHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 3445666778888888888888777755432 21211 1567888888888888888877766553
No 26
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=44.93 E-value=17 Score=22.70 Aligned_cols=22 Identities=14% Similarity=0.256 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 024062 56 EATELGKKARELKKAADTLHQE 77 (273)
Q Consensus 56 ~~~~i~~~~~~l~e~~~~l~~~ 77 (273)
++++++++.++++.....|+.+
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~E 23 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNE 23 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHH
Confidence 4577888888888888777754
No 27
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=44.75 E-value=34 Score=23.23 Aligned_cols=21 Identities=19% Similarity=0.438 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024062 90 NVKSVEKELLQLEEDVKLLEE 110 (273)
Q Consensus 90 ~~~~l~~~~~~Le~~~~~le~ 110 (273)
++..|++.++.|+++.++++.
T Consensus 29 EV~~Le~NLrEL~~ei~~~~~ 49 (51)
T 1yzm_A 29 EVRTLQENLRQLQDEYDQQQT 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 788888888888888887764
No 28
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=44.34 E-value=91 Score=30.24 Aligned_cols=57 Identities=14% Similarity=0.142 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh----ccCCcChHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 024062 55 KEATELGKKARELKKAADTLHQEE----RSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEM 111 (273)
Q Consensus 55 ~~~~~i~~~~~~l~e~~~~l~~~~----~~~~~~~k~rr~~~~l~~~~~~Le~~~~~le~~ 111 (273)
+++.++..+.++++++..++.++- +++.....-+.+.+.++.++..||++.+.+++.
T Consensus 40 ~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~ 100 (485)
T 3qne_A 40 KEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKN 100 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556666666666555555421 112112223345555556665555555544443
No 29
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=43.55 E-value=1.2e+02 Score=24.17 Aligned_cols=26 Identities=19% Similarity=0.318 Sum_probs=18.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHh
Q 024062 86 KWRKNVKSVEKELLQLEEDVKLLEEM 111 (273)
Q Consensus 86 k~rr~~~~l~~~~~~Le~~~~~le~~ 111 (273)
..++++..++++...|+++..+||..
T Consensus 107 ~~~~e~~~l~~~~~~l~~~~~~le~~ 132 (138)
T 3hnw_A 107 SSAKEIKELKSEINKYQKNIVKLETE 132 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777777777777777654
No 30
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=43.23 E-value=83 Score=30.01 Aligned_cols=11 Identities=36% Similarity=0.588 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 024062 93 SVEKELLQLEE 103 (273)
Q Consensus 93 ~l~~~~~~Le~ 103 (273)
.+++|...+|+
T Consensus 541 ~~~~~~~~le~ 551 (597)
T 3oja_B 541 DLEQENIALEK 551 (597)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHhhhHHHHH
Confidence 33344444444
No 31
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=42.83 E-value=72 Score=23.00 Aligned_cols=56 Identities=11% Similarity=0.231 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCC-cChHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 024062 56 EATELGKKARELKKAADTLHQEERSGS-KGRKWRKNVKSVEKELLQLEEDVKLLEEM 111 (273)
Q Consensus 56 ~~~~i~~~~~~l~e~~~~l~~~~~~~~-~~~k~rr~~~~l~~~~~~Le~~~~~le~~ 111 (273)
....+..+.+...++..+.+.+-+... ...+--.++..+++....||.+.+..++.
T Consensus 7 Km~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~ 63 (81)
T 1ic2_A 7 KMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSES 63 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555554322111 01122246667777777777776666554
No 32
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=42.31 E-value=25 Score=25.36 Aligned_cols=21 Identities=19% Similarity=0.438 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024062 90 NVKSVEKELLQLEEDVKLLEE 110 (273)
Q Consensus 90 ~~~~l~~~~~~Le~~~~~le~ 110 (273)
|+..|++.+++|+++.++++.
T Consensus 47 EV~tLe~NLrEL~~ei~~~q~ 67 (69)
T 1z0k_B 47 EVRTLQENLRQLQDEYDQQQT 67 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 788888888888888877653
No 33
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=42.12 E-value=99 Score=22.58 Aligned_cols=30 Identities=17% Similarity=0.255 Sum_probs=16.0
Q ss_pred cChHhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024062 83 KGRKWRKNVKSVEKELLQLEEDVKLLEEMY 112 (273)
Q Consensus 83 ~~~k~rr~~~~l~~~~~~Le~~~~~le~~y 112 (273)
.|-|.+|+++.+..+...||.+...++...
T Consensus 16 LSykeqrEle~le~~Ie~LE~~i~~le~~l 45 (89)
T 2lw1_A 16 LSYKLQRELEQLPQLLEDLEAKLEALQTQV 45 (89)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555443
No 34
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=42.00 E-value=99 Score=29.09 Aligned_cols=55 Identities=20% Similarity=0.225 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCcChHh----HHHHHHHHHHHHHHHHHHHHHHHh
Q 024062 55 KEATELGKKARELKKAADTLHQEERSGSKGRKW----RKNVKSVEKELLQLEEDVKLLEEM 111 (273)
Q Consensus 55 ~~~~~i~~~~~~l~e~~~~l~~~~~~~~~~~k~----rr~~~~l~~~~~~Le~~~~~le~~ 111 (273)
+++.++..+.++++.+..++.++-.+ ++..+ +.+...++.++..||++.+.+++.
T Consensus 35 ~~~r~~~~~~~~l~~~~n~~sk~i~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 93 (421)
T 1ses_A 35 REVQELKKRLQEVQTERNQVAKRVPK--APPEEKEALIARGKALGEEAKRLEEALREKEAR 93 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSS--SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh--hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666666666654322 22122 345555666666666665555544
No 35
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=41.51 E-value=23 Score=22.12 Aligned_cols=22 Identities=27% Similarity=0.238 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 024062 56 EATELGKKARELKKAADTLHQE 77 (273)
Q Consensus 56 ~~~~i~~~~~~l~e~~~~l~~~ 77 (273)
+++++++|+++|+..-..|+++
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~e 23 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXE 23 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHH
Confidence 4567778888887777777643
No 36
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=41.36 E-value=36 Score=19.65 Aligned_cols=15 Identities=20% Similarity=0.379 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHhhhc
Q 024062 65 RELKKAADTLHQEER 79 (273)
Q Consensus 65 ~~l~e~~~~l~~~~~ 79 (273)
+++.|+-+.++++-|
T Consensus 11 edlqerlrklrkklr 25 (27)
T 3twe_A 11 EDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 344455555544433
No 37
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=41.24 E-value=59 Score=23.09 Aligned_cols=69 Identities=10% Similarity=0.177 Sum_probs=41.2
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc------CCcC-------hHhHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 024062 48 ITRSQYIKEATELGKKARELKKAADTLHQEERS------GSKG-------RKWRKNVKSVEKELLQLEEDVKLLEEMYPQ 114 (273)
Q Consensus 48 is~~~~~~~~~~i~~~~~~l~e~~~~l~~~~~~------~~~~-------~k~rr~~~~l~~~~~~Le~~~~~le~~y~~ 114 (273)
++.+++.+...++...++++.+.-+.|+..-.. |.-+ .+++...+++++.+....+..+.....|.+
T Consensus 9 v~~~~l~~~A~~~~~~~~~i~~~l~~L~~~v~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~~a~~~~~ 88 (99)
T 3zbh_A 9 LTPEELRGVARQYNVESSNVTELIARLDQMSHTLQGIWEGASSEAFIQQYQELRPSFEKMAVLLNEVGQQLHNSATILED 88 (99)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777777777777777777777653221 1111 335555556666665555555555555555
Q ss_pred Cc
Q 024062 115 GE 116 (273)
Q Consensus 115 ~~ 116 (273)
.+
T Consensus 89 ~d 90 (99)
T 3zbh_A 89 TD 90 (99)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 38
>3mky_B Protein SOPB; partition, F plasmid, centromere, DNA binding protein- complex; HET: DNA; 2.86A {Escherichia coli} PDB: 3mkw_B* 3mkz_A*
Probab=40.30 E-value=25 Score=30.04 Aligned_cols=48 Identities=23% Similarity=0.279 Sum_probs=33.3
Q ss_pred hhhhhhhhHHHHhhcccCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024062 26 GVGIACLPLGLIFSFIRRPKAVITRSQYIKEATELGKKARELKKAADTLH 75 (273)
Q Consensus 26 gvGlaalPi~LI~~f~~Rpk~~is~~~~~~~~~~i~~~~~~l~e~~~~l~ 75 (273)
.+-.|.||-++|..|++ |-- ++.+.+........+..+.+.+..+.+.
T Consensus 62 ~L~~A~LP~~lv~~fp~-p~d-Ls~~~~~~L~k~~~~~~~ll~~~a~~l~ 109 (189)
T 3mky_B 62 CINTAKLPKSVVALFSH-PGE-LSARSGDALQKAFTDKEELLKQQASNLH 109 (189)
T ss_dssp HHHHHHSCHHHHHTSSS-GGG-SCHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHcCC-HHh-cCchhHHHHHHHHhccHHHHHHHHHHHH
Confidence 45678999999999986 877 9988876655544444444445555554
No 39
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=40.06 E-value=87 Score=29.51 Aligned_cols=23 Identities=22% Similarity=0.289 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 024062 54 IKEATELGKKARELKKAADTLHQ 76 (273)
Q Consensus 54 ~~~~~~i~~~~~~l~e~~~~l~~ 76 (273)
.+++.++..+.++++.+..++.+
T Consensus 36 ~~~~r~~~~~~~~l~~~~n~~sk 58 (425)
T 2dq3_A 36 DKRRREIIKRLEALRSERNKLSK 58 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33556666666677766666654
No 40
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=38.83 E-value=1e+02 Score=21.70 Aligned_cols=31 Identities=19% Similarity=0.197 Sum_probs=24.8
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024062 48 ITRSQYIKEATELGKKARELKKAADTLHQEE 78 (273)
Q Consensus 48 is~~~~~~~~~~i~~~~~~l~e~~~~l~~~~ 78 (273)
++.+++.....++...++++.+.-..|++.-
T Consensus 9 v~~e~l~~~A~~~~~~~~~i~~~l~~L~~~~ 39 (93)
T 4ioe_A 9 ITPEELERIAGNFKNAAGEAQSQINRLEGDI 39 (93)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888888888888888888888887643
No 41
>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B
Probab=38.52 E-value=1e+02 Score=21.78 Aligned_cols=71 Identities=14% Similarity=0.183 Sum_probs=34.7
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHhhhc------cCCcC-------hHhHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 024062 48 ITRSQYIKEATELGKKARELKKAADTLHQEER------SGSKG-------RKWRKNVKSVEKELLQLEEDVKLLEEMYPQ 114 (273)
Q Consensus 48 is~~~~~~~~~~i~~~~~~l~e~~~~l~~~~~------~~~~~-------~k~rr~~~~l~~~~~~Le~~~~~le~~y~~ 114 (273)
++.+++.....++...++++.+...+|+..-. +|.-+ .+|++..+++++.+..+.+..+.....|..
T Consensus 5 v~~~~l~~~a~~~~~~~~~i~~~l~~l~~~v~~l~~~W~G~A~~af~~~~~~w~~~~~~~~~~L~~i~~~l~~~~~~y~~ 84 (94)
T 3fav_B 5 WNFAGIEAAASAIQGNVTSIHSLLDEGKQSLTKLAAAWGGSGSEAYQGVQQKWDATATELNNALQNLARTISEAGQAMAS 84 (94)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGTCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555556666666666666666554221 12212 456667777777777777777777777777
Q ss_pred Cccc
Q 024062 115 GEKA 118 (273)
Q Consensus 115 ~~~~ 118 (273)
.+..
T Consensus 85 ~d~~ 88 (94)
T 3fav_B 85 TEGN 88 (94)
T ss_dssp ----
T ss_pred HHHH
Confidence 6653
No 42
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=38.43 E-value=86 Score=23.06 Aligned_cols=34 Identities=21% Similarity=0.482 Sum_probs=22.5
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHhcccCccc
Q 024062 85 RKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKA 118 (273)
Q Consensus 85 ~k~rr~~~~l~~~~~~Le~~~~~le~~y~~~~~~ 118 (273)
.+|++..+++++.+..+.+..+.....|...+.+
T Consensus 63 ~~W~~~a~~l~~~L~~i~~~l~~a~~~y~~~e~~ 96 (103)
T 4i0x_B 63 KEWMDAARELVEGLSQMEEAARTAHGAYSEAQEA 96 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788888888888888888888878877764
No 43
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=38.07 E-value=91 Score=24.54 Aligned_cols=15 Identities=13% Similarity=0.102 Sum_probs=8.2
Q ss_pred hhhhhhhhhHHHHhh
Q 024062 25 GGVGIACLPLGLIFS 39 (273)
Q Consensus 25 ~gvGlaalPi~LI~~ 39 (273)
.|+++.+..++-+-+
T Consensus 89 ~g~~~~~~~~~~~~~ 103 (148)
T 3vou_A 89 IGIGLVFGFIHKLAV 103 (148)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555555555544
No 44
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=37.31 E-value=92 Score=22.61 Aligned_cols=58 Identities=14% Similarity=0.046 Sum_probs=35.2
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcChHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 024062 48 ITRSQYIKEATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEM 111 (273)
Q Consensus 48 is~~~~~~~~~~i~~~~~~l~e~~~~l~~~~~~~~~~~k~rr~~~~l~~~~~~Le~~~~~le~~ 111 (273)
++.++..++-.+++.|..-.-+-.++|...- .+.++++++++++++.|.++.+.++.+
T Consensus 7 ~~~~~le~Ri~~LE~klAfqE~tIeeLn~~v------~~Qq~~Id~L~~ql~~L~~rl~~~~~~ 64 (78)
T 3efg_A 7 PRDQELEARLVELETRLSFQEQALTELSEAL------ADARLTGARNAELIRHLLEDLGKVRST 64 (78)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHTC------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 5556666666667666655555555554322 356789999999999999888777754
No 45
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=36.53 E-value=20 Score=28.31 Aligned_cols=25 Identities=16% Similarity=0.212 Sum_probs=18.7
Q ss_pred HHHHHhhhhhhhhhHHHHhhcccCC
Q 024062 20 LFSIFGGVGIACLPLGLIFSFIRRP 44 (273)
Q Consensus 20 lfv~y~gvGlaalPi~LI~~f~~Rp 44 (273)
.+....|+++.+++++.+-++....
T Consensus 75 ~~~~~~g~~~~~~~~~~i~~~~~~~ 99 (137)
T 4h33_A 75 SIMMLFGIAFIGMITSTITNFFRCK 99 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678889999999998876543
No 46
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=36.41 E-value=31 Score=21.51 Aligned_cols=22 Identities=9% Similarity=0.036 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 024062 56 EATELGKKARELKKAADTLHQE 77 (273)
Q Consensus 56 ~~~~i~~~~~~l~e~~~~l~~~ 77 (273)
+++++++++++|+..-..|+.+
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~E 23 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENE 23 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHH
Confidence 4567777777777766666643
No 47
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=35.58 E-value=3.1e+02 Score=26.36 Aligned_cols=31 Identities=13% Similarity=0.159 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHH-----hhhhhhhhhHHHHhh
Q 024062 9 VVALATIVGSVLFSIF-----GGVGIACLPLGLIFS 39 (273)
Q Consensus 9 ~i~~l~~iG~~lfv~y-----~gvGlaalPi~LI~~ 39 (273)
+.+.+.+++.+..+++ +-++++.+|+-++-.
T Consensus 143 ~~~~~~~i~~~~~l~~~~~~l~l~~l~~~~l~~~~~ 178 (578)
T 4a82_A 143 WLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTV 178 (578)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3344444444444433 334445556554443
No 48
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=35.51 E-value=94 Score=26.95 Aligned_cols=22 Identities=14% Similarity=0.114 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024062 89 KNVKSVEKELLQLEEDVKLLEE 110 (273)
Q Consensus 89 r~~~~l~~~~~~Le~~~~~le~ 110 (273)
|+++.+.+|...++++...++.
T Consensus 90 kE~~aL~kEie~~~~~i~~lE~ 111 (256)
T 3na7_A 90 RELRSLNIEEDIAKERSNQANR 111 (256)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555444443
No 49
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=35.37 E-value=25 Score=24.34 Aligned_cols=12 Identities=50% Similarity=0.750 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHH
Q 024062 93 SVEKELLQLEED 104 (273)
Q Consensus 93 ~l~~~~~~Le~~ 104 (273)
+...|+..||++
T Consensus 52 kveeevkkleee 63 (67)
T 1lq7_A 52 KVEEEVKKLEEE 63 (67)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444444
No 50
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=34.43 E-value=84 Score=25.57 Aligned_cols=62 Identities=18% Similarity=0.273 Sum_probs=32.9
Q ss_pred cChHHHHHHHHHHHHH-HHHHHHHHHHHHhhhccCCcChH-----hHHHHHHHHHHHHHHHHHHHHHH
Q 024062 48 ITRSQYIKEATELGKK-ARELKKAADTLHQEERSGSKGRK-----WRKNVKSVEKELLQLEEDVKLLE 109 (273)
Q Consensus 48 is~~~~~~~~~~i~~~-~~~l~e~~~~l~~~~~~~~~~~k-----~rr~~~~l~~~~~~Le~~~~~le 109 (273)
+|..-|.+.+.+++.- ..+--+..+.++.....|-.|.. .|++...+++..+.|+++.++++
T Consensus 6 lT~~g~~~L~~EL~~L~~~~R~~i~~~i~~Ar~~GDlsENaeY~aak~~q~~~e~rI~~L~~~L~~A~ 73 (158)
T 2p4v_A 6 VTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYLTKCMENLK 73 (158)
T ss_dssp ECHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHSCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCE
T ss_pred ccHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhCe
Confidence 7877777777777743 22334555666554433433211 23444555555555555544433
No 51
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=34.16 E-value=1.5e+02 Score=22.48 Aligned_cols=26 Identities=19% Similarity=0.410 Sum_probs=15.8
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHH
Q 024062 85 RKWRKNVKSVEKELLQLEEDVKLLEE 110 (273)
Q Consensus 85 ~k~rr~~~~l~~~~~~Le~~~~~le~ 110 (273)
.|-||+++++..|+..+.+....-..
T Consensus 52 aKL~Rk~DKl~~ele~l~~~l~~~k~ 77 (93)
T 3sjb_C 52 TKNNRKLDSLDKEINNLKDEIQSENK 77 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567777777776666655544433
No 52
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=33.73 E-value=1.4e+02 Score=22.55 Aligned_cols=63 Identities=8% Similarity=0.249 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc--cC--CcChHh---HHHHHHHHHHHHHHHHHHHHHHHhccc
Q 024062 52 QYIKEATELGKKARELKKAADTLHQEER--SG--SKGRKW---RKNVKSVEKELLQLEEDVKLLEEMYPQ 114 (273)
Q Consensus 52 ~~~~~~~~i~~~~~~l~e~~~~l~~~~~--~~--~~~~k~---rr~~~~l~~~~~~Le~~~~~le~~y~~ 114 (273)
+......++.+.+..++.+-+.+++... ++ .-+..+ +.....+.+....+-.+++..+..|+.
T Consensus 51 ~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~~Rir~~q~~~L~~kf~e~m~~y~~~q~~yre 120 (127)
T 1ez3_A 51 ELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRE 120 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444556666777777777777665221 11 122222 246677888888888888888777654
No 53
>1z0j_B FYVE-finger-containing RAB5 effector protein RABE, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Homo sapiens} SCOP: a.2.19.1
Probab=33.53 E-value=48 Score=23.16 Aligned_cols=22 Identities=14% Similarity=0.184 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 024062 90 NVKSVEKELLQLEEDVKLLEEM 111 (273)
Q Consensus 90 ~~~~l~~~~~~Le~~~~~le~~ 111 (273)
++..|.+.++.|+++..+++..
T Consensus 36 EV~~Le~NLrEL~~ei~~~~~~ 57 (59)
T 1z0j_B 36 EVEVLTENLRELKHTLAKQKGG 57 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 7888888888888888877654
No 54
>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD, protein binding; HET: MSE; 1.85A {Mus musculus}
Probab=33.32 E-value=1.1e+02 Score=26.96 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 024062 52 QYIKEATELGKKARELKKAADTLHQ 76 (273)
Q Consensus 52 ~~~~~~~~i~~~~~~l~e~~~~l~~ 76 (273)
+|+..++++.++..++...++..++
T Consensus 132 ~~k~~r~elkk~~~~~~k~qkK~rk 156 (253)
T 2d1l_A 132 EYKKARQEIKKKSSDTLKLQKKAKK 156 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhcc
Confidence 4455556666666665555544443
No 55
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=33.28 E-value=1.1e+02 Score=22.72 Aligned_cols=55 Identities=11% Similarity=0.242 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccC--C--cChHhHHHHHHHHHHHHH-HHHHHHHHHH
Q 024062 56 EATELGKKARELKKAADTLHQEERSG--S--KGRKWRKNVKSVEKELLQ-LEEDVKLLEE 110 (273)
Q Consensus 56 ~~~~i~~~~~~l~e~~~~l~~~~~~~--~--~~~k~rr~~~~l~~~~~~-Le~~~~~le~ 110 (273)
.-.++++..++..|.-++.+-+-+.. . ...+...+++.+++++.. |.++.+.+..
T Consensus 35 ~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk~dl~~~lk~~lk~l~d 94 (97)
T 3onj_A 35 TLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWKKTIQSDIKRPLQSLVD 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33445555555555555555544433 1 113344567777777777 7777777654
No 56
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=33.17 E-value=89 Score=26.14 Aligned_cols=22 Identities=18% Similarity=0.225 Sum_probs=12.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHH
Q 024062 86 KWRKNVKSVEKELLQLEEDVKL 107 (273)
Q Consensus 86 k~rr~~~~l~~~~~~Le~~~~~ 107 (273)
-|..+++++.+|..+|..+.+.
T Consensus 110 ~DeakI~aL~~Ei~~Lr~qL~~ 131 (175)
T 3lay_A 110 PDTAKINAVAKEMESLGQKLDE 131 (175)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666554433
No 57
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=32.20 E-value=1.3e+02 Score=21.07 Aligned_cols=70 Identities=7% Similarity=0.223 Sum_probs=42.8
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHhhhc------cCCcC-------hHhHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 024062 48 ITRSQYIKEATELGKKARELKKAADTLHQEER------SGSKG-------RKWRKNVKSVEKELLQLEEDVKLLEEMYPQ 114 (273)
Q Consensus 48 is~~~~~~~~~~i~~~~~~l~e~~~~l~~~~~------~~~~~-------~k~rr~~~~l~~~~~~Le~~~~~le~~y~~ 114 (273)
++.+++.+...++...++++.+..++|++.-. +|.-+ .+++...+++.+.+..+.+..+.....|..
T Consensus 6 v~~~~l~~~A~~~~~~~~~l~~~l~~L~~~~~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~~a~~y~~ 85 (97)
T 2vs0_A 6 MSPEEIRAKSQSYGQGSDQIRQILSDLTRAQGEIAANWEGQAFSRFEEQFQQLSPKVEKFAQLLEEIKQQLNSTADAVQE 85 (97)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777777777777765322 12222 345566667777777777777776666777
Q ss_pred Ccc
Q 024062 115 GEK 117 (273)
Q Consensus 115 ~~~ 117 (273)
.+.
T Consensus 86 ~d~ 88 (97)
T 2vs0_A 86 QDQ 88 (97)
T ss_dssp ---
T ss_pred HHH
Confidence 664
No 58
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=31.76 E-value=1.5e+02 Score=22.32 Aligned_cols=20 Identities=20% Similarity=0.265 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024062 90 NVKSVEKELLQLEEDVKLLE 109 (273)
Q Consensus 90 ~~~~l~~~~~~Le~~~~~le 109 (273)
++..+++....||.+.+..+
T Consensus 45 Ei~sL~kk~~~lE~eld~~e 64 (101)
T 3u1c_A 45 DIVQLEKQLRVTEDSRDQVL 64 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555444433
No 59
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=30.95 E-value=1.7e+02 Score=21.96 Aligned_cols=55 Identities=18% Similarity=0.236 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCC--cChHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 024062 57 ATELGKKARELKKAADTLHQEERSGS--KGRKWRKNVKSVEKELLQLEEDVKLLEEM 111 (273)
Q Consensus 57 ~~~i~~~~~~l~e~~~~l~~~~~~~~--~~~k~rr~~~~l~~~~~~Le~~~~~le~~ 111 (273)
-.++++..++..|.-++.+-+-+... ...+...+++.+++++..|.++.+++...
T Consensus 40 i~~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk~elk~~~~~ 96 (102)
T 1vcs_A 40 VANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKRSRIA 96 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHHHTHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444455555555444444322 22445568888888888888888876654
No 60
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=30.67 E-value=36 Score=21.08 Aligned_cols=20 Identities=25% Similarity=0.225 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 024062 57 ATELGKKARELKKAADTLHQ 76 (273)
Q Consensus 57 ~~~i~~~~~~l~e~~~~l~~ 76 (273)
++++++|+++|++.-..|+.
T Consensus 2 M~QLE~kVEeLl~~n~~Le~ 21 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLEN 21 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHH
Confidence 34566666677666666654
No 61
>3fav_A ESAT-6-like protein ESXB; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_A
Probab=30.65 E-value=1.5e+02 Score=21.32 Aligned_cols=71 Identities=14% Similarity=0.275 Sum_probs=38.5
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--CCc-----------ChHhHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 024062 48 ITRSQYIKEATELGKKARELKKAADTLHQEERS--GSK-----------GRKWRKNVKSVEKELLQLEEDVKLLEEMYPQ 114 (273)
Q Consensus 48 is~~~~~~~~~~i~~~~~~l~e~~~~l~~~~~~--~~~-----------~~k~rr~~~~l~~~~~~Le~~~~~le~~y~~ 114 (273)
++.++......++..-..++.+...+|+..-.+ +.- -.+|+....++++.+..+.+..+.....|..
T Consensus 7 v~~~~l~~~A~~~~~~~~~l~~~l~~l~~~~~~L~~~W~G~A~~af~~~~~~w~~~~~~l~~~L~~i~~~l~~~a~~y~~ 86 (101)
T 3fav_A 7 TDAATLAQEAGNFERISGDLKTQIDQVESTAGSLQGQWRGAAGTAAQAAVVRFQEAANKQKQELDEISTNIRQAGVQYSR 86 (101)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred eCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666666666666666666643221 111 1456667777777777777777777777877
Q ss_pred Cccc
Q 024062 115 GEKA 118 (273)
Q Consensus 115 ~~~~ 118 (273)
.+..
T Consensus 87 ~d~~ 90 (101)
T 3fav_A 87 ADEE 90 (101)
T ss_dssp ----
T ss_pred HHHH
Confidence 7753
No 62
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=30.46 E-value=71 Score=21.39 Aligned_cols=18 Identities=22% Similarity=0.335 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 024062 90 NVKSVEKELLQLEEDVKL 107 (273)
Q Consensus 90 ~~~~l~~~~~~Le~~~~~ 107 (273)
|+..|++.++.|+++++.
T Consensus 28 EV~~L~~NL~EL~~E~~~ 45 (48)
T 3v1a_A 28 EVRTLQENLHQLMHEYFQ 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 667777777777776654
No 63
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=30.10 E-value=2.2e+02 Score=23.01 Aligned_cols=68 Identities=9% Similarity=0.185 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--cC--CcChH---hHHHHHHHHHHHHHHHHHHHHHHHhcccCcc
Q 024062 50 RSQYIKEATELGKKARELKKAADTLHQEER--SG--SKGRK---WRKNVKSVEKELLQLEEDVKLLEEMYPQGEK 117 (273)
Q Consensus 50 ~~~~~~~~~~i~~~~~~l~e~~~~l~~~~~--~~--~~~~k---~rr~~~~l~~~~~~Le~~~~~le~~y~~~~~ 117 (273)
+.++.....++.+.+++++.+-+.+++.-. ++ ..+.. -+.....+.++...+-.+++.++..|++.-.
T Consensus 80 k~~le~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~~Rir~~q~~~L~~kf~~~m~~yq~~q~~y~~~~K 154 (180)
T 1s94_A 80 KEELEELMTDIKRTANKVRGKLKTIELNIEQEEHSNKSSADLRIRKTQYSTISRKFVEVMSDYNTTQIDYRDRCK 154 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666777777777777777775221 11 11221 2246778999999999999999999887764
No 64
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=29.57 E-value=1.7e+02 Score=21.47 Aligned_cols=55 Identities=25% Similarity=0.329 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcChHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 024062 51 SQYIKEATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEM 111 (273)
Q Consensus 51 ~~~~~~~~~i~~~~~~l~e~~~~l~~~~~~~~~~~k~rr~~~~l~~~~~~Le~~~~~le~~ 111 (273)
.|+.+.|..++.--++|+.+-+++-.+.. --|-++...++....++.+...+|+.
T Consensus 19 ~eLl~TKNaLnvvk~DLI~rvdELt~E~e------~l~~El~s~~~~~~r~~~ri~elEeE 73 (77)
T 2w83_C 19 TQLLETKNALNIVKNDLIAKVDELTCEKD------VLQGELEAVKQAKLKLEEKNRELEEE 73 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778887777777777777765432 23345555555555555555555543
No 65
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=29.26 E-value=2.2e+02 Score=22.72 Aligned_cols=22 Identities=18% Similarity=0.353 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024062 89 KNVKSVEKELLQLEEDVKLLEE 110 (273)
Q Consensus 89 r~~~~l~~~~~~Le~~~~~le~ 110 (273)
-+++..+++...|.++...++.
T Consensus 103 ~k~e~~~~e~~~l~~~~~~l~~ 124 (138)
T 3hnw_A 103 IKAESSAKEIKELKSEINKYQK 124 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555444444
No 66
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=29.18 E-value=91 Score=18.82 Aligned_cols=21 Identities=29% Similarity=0.490 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024062 90 NVKSVEKELLQLEEDVKLLEE 110 (273)
Q Consensus 90 ~~~~l~~~~~~Le~~~~~le~ 110 (273)
++++++.-+..|.++.+++|+
T Consensus 7 ~~r~l~~ivq~lq~r~drle~ 27 (32)
T 2akf_A 7 DVRNLNAIVQKLQERLDRLEE 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555556666666666665
No 67
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=29.16 E-value=99 Score=29.99 Aligned_cols=23 Identities=26% Similarity=0.242 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 024062 89 KNVKSVEKELLQLEEDVKLLEEM 111 (273)
Q Consensus 89 r~~~~l~~~~~~Le~~~~~le~~ 111 (273)
.+.+.++.++..||++.+.+++.
T Consensus 123 ~~~~~l~~~i~~l~~~~~~~~~~ 145 (501)
T 1wle_A 123 ARGREIRKQLTLLYPKEAQLEEQ 145 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555554443
No 68
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=29.15 E-value=48 Score=20.51 Aligned_cols=21 Identities=10% Similarity=0.094 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 024062 57 ATELGKKARELKKAADTLHQE 77 (273)
Q Consensus 57 ~~~i~~~~~~l~e~~~~l~~~ 77 (273)
++++++++++++..-..|+.+
T Consensus 2 MnQLEdKvEeLl~~~~~Le~E 22 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENX 22 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHH
Confidence 456777777777666666543
No 69
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=28.96 E-value=81 Score=18.17 Aligned_cols=19 Identities=26% Similarity=0.387 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024062 89 KNVKSVEKELLQLEEDVKL 107 (273)
Q Consensus 89 r~~~~l~~~~~~Le~~~~~ 107 (273)
.|.-.++.|+|.|.++...
T Consensus 7 devgelkgevralkdevkd 25 (27)
T 3v86_A 7 DEVGELKGEVRALKDEVKD 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHhc
Confidence 3555566666666655544
No 70
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=28.75 E-value=1.4e+02 Score=25.27 Aligned_cols=25 Identities=24% Similarity=0.239 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccC
Q 024062 91 VKSVEKELLQLEEDVKLLEEMYPQG 115 (273)
Q Consensus 91 ~~~l~~~~~~Le~~~~~le~~y~~~ 115 (273)
+++|+.+....|++.+.+++.+..+
T Consensus 130 ~~~L~~a~~e~eeeS~~l~~~F~~~ 154 (192)
T 2p22_C 130 KKKLEQNTKKLDEESSQLETTTRSI 154 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4578999999999999999998764
No 71
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=28.72 E-value=1.8e+02 Score=21.69 Aligned_cols=22 Identities=18% Similarity=0.515 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024062 89 KNVKSVEKELLQLEEDVKLLEE 110 (273)
Q Consensus 89 r~~~~l~~~~~~Le~~~~~le~ 110 (273)
|+.+.++++...++++.+-++.
T Consensus 60 ~eyn~~~~ql~e~~dE~~Sl~~ 81 (96)
T 3q8t_A 60 REYSEFKRQQLELDDELKSVEN 81 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555444444433
No 72
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=28.39 E-value=49 Score=20.85 Aligned_cols=20 Identities=30% Similarity=0.288 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 024062 57 ATELGKKARELKKAADTLHQ 76 (273)
Q Consensus 57 ~~~i~~~~~~l~e~~~~l~~ 76 (273)
.+++++++++|+..-..|+.
T Consensus 3 MnQLE~KVEeLl~~~~~Le~ 22 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKN 22 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHH
Confidence 45666666666666555554
No 73
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=27.84 E-value=1.9e+02 Score=21.56 Aligned_cols=18 Identities=22% Similarity=0.377 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 024062 90 NVKSVEKELLQLEEDVKL 107 (273)
Q Consensus 90 ~~~~l~~~~~~Le~~~~~ 107 (273)
++..+++....|+.+.+.
T Consensus 45 ei~sL~kKiq~lE~eld~ 62 (101)
T 3u59_A 45 EQQGLQKKLKGTEDEVEK 62 (101)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444443
No 74
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=27.73 E-value=1.7e+02 Score=20.96 Aligned_cols=25 Identities=4% Similarity=0.035 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 024062 52 QYIKEATELGKKARELKKAADTLHQ 76 (273)
Q Consensus 52 ~~~~~~~~i~~~~~~l~e~~~~l~~ 76 (273)
|..+.+....+-.++++|+|+.|+.
T Consensus 23 el~ev~~iM~~NI~~vLeRGekLd~ 47 (80)
T 1l4a_A 23 QVEEVVDIMRVNVDKVLERDSKISE 47 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 4455666666777888899998886
No 75
>4i0x_A ESAT-6-like protein MAB_3112; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=27.58 E-value=1.7e+02 Score=20.99 Aligned_cols=67 Identities=12% Similarity=0.142 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcc------CCc-------ChHhHHHHHHHHHHHHHHHHHHHHHHHhcccCccc
Q 024062 52 QYIKEATELGKKARELKKAADTLHQEERS------GSK-------GRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKA 118 (273)
Q Consensus 52 ~~~~~~~~i~~~~~~l~e~~~~l~~~~~~------~~~-------~~k~rr~~~~l~~~~~~Le~~~~~le~~y~~~~~~ 118 (273)
|..+....+...++++.+.-+.+++.-.+ |.- -.+|+...++++..+..+.+..+.....|.+.+..
T Consensus 4 el~~~a~~~~~~~~~i~~~l~~l~~~v~~l~~~W~G~Aa~af~~~~~~w~~~a~~l~~~L~~i~~~l~~aa~~y~~~d~~ 83 (94)
T 4i0x_A 4 EVGALSKFAASLADQMRAGSNSLDRDVQSLFGVWKGSAADAYRSGWDEMQDGATKVWNALTDIASTLGSNAAAFHAQETS 83 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555442211 111 14566677777777777777777666667777653
No 76
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=27.51 E-value=1.2e+02 Score=24.17 Aligned_cols=27 Identities=26% Similarity=0.302 Sum_probs=17.2
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 024062 85 RKWRKNVKSVEKELLQLEEDVKLLEEM 111 (273)
Q Consensus 85 ~k~rr~~~~l~~~~~~Le~~~~~le~~ 111 (273)
+.|...+.++.+|...|+.+.+++...
T Consensus 32 rgd~~~i~qf~~E~~~l~k~I~~lk~~ 58 (123)
T 2lf0_A 32 VEAADKYAELEKEKATLEAEIARLREV 58 (123)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666777777777766666554
No 77
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=27.36 E-value=1.9e+02 Score=21.52 Aligned_cols=23 Identities=4% Similarity=0.021 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 024062 54 IKEATELGKKARELKKAADTLHQ 76 (273)
Q Consensus 54 ~~~~~~i~~~~~~l~e~~~~l~~ 76 (273)
.+.+....+-.++++|+|+.|+.
T Consensus 40 deVk~IM~~NI~kvLeRGEkLd~ 62 (96)
T 1sfc_A 40 DEVVDIMRVNVDKVLERDQKLSE 62 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHH
Confidence 34444444555666666666664
No 78
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=26.55 E-value=51 Score=20.52 Aligned_cols=21 Identities=14% Similarity=0.238 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 024062 57 ATELGKKARELKKAADTLHQE 77 (273)
Q Consensus 57 ~~~i~~~~~~l~e~~~~l~~~ 77 (273)
+++++++.++++.+-..|+.+
T Consensus 3 M~QLEdKVEeLl~~n~~Le~E 23 (34)
T 1uo4_A 3 MKQIEDKGEEILSKLYHIENE 23 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHH
Confidence 467777777777776666643
No 79
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=26.34 E-value=2.1e+02 Score=21.68 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 024062 89 KNVKSVEKELLQLEEDVKLLEEM 111 (273)
Q Consensus 89 r~~~~l~~~~~~Le~~~~~le~~ 111 (273)
++.+.+|.+--.|+.+.+.+++.
T Consensus 71 s~aK~LRnKA~~L~~eLe~F~~~ 93 (96)
T 1t3j_A 71 NNSKLLRNKAVQLESELENFSKQ 93 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555554443
No 80
>1v74_B Colicin D immunity protein; colicin D - IMMD complex, cytotoxicity, transfer RNAse, protein-protein inhibition; HET: 1PE; 2.00A {Escherichia coli} SCOP: a.24.20.1 PDB: 1tfk_B* 1tfo_B
Probab=26.11 E-value=1.6e+02 Score=21.92 Aligned_cols=27 Identities=15% Similarity=0.229 Sum_probs=20.9
Q ss_pred HHHHhhcccCCCcccChHHHHHHHHHHHHH
Q 024062 34 LGLIFSFIRRPKAVITRSQYIKEATELGKK 63 (273)
Q Consensus 34 i~LI~~f~~Rpk~~is~~~~~~~~~~i~~~ 63 (273)
+++.++|++- + ||+++++++--+++++
T Consensus 7 i~la~~Fv~~--~-IsA~~F~ee~wr~er~ 33 (87)
T 1v74_B 7 IDLAKLFLAS--K-ITAIEFSERICVERRR 33 (87)
T ss_dssp HHHHHHHHTT--S-SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC--c-CcHHHHHHHHHHHHhh
Confidence 6889999994 3 9999999865555544
No 81
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=25.84 E-value=2.1e+02 Score=22.24 Aligned_cols=20 Identities=25% Similarity=0.268 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 024062 92 KSVEKELLQLEEDVKLLEEM 111 (273)
Q Consensus 92 ~~l~~~~~~Le~~~~~le~~ 111 (273)
+.++..+|.||...+.+|.+
T Consensus 52 ~~l~~~iReLEq~NDDLER~ 71 (111)
T 2v66_B 52 EQLHKYVRELEQANDDLERA 71 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhchHHHHH
Confidence 33444455555554444444
No 82
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=25.35 E-value=2.2e+02 Score=21.37 Aligned_cols=16 Identities=19% Similarity=0.486 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 024062 89 KNVKSVEKELLQLEED 104 (273)
Q Consensus 89 r~~~~l~~~~~~Le~~ 104 (273)
.+++.+++++..|.++
T Consensus 85 ~klr~Yk~dL~~lk~e 100 (102)
T 2qyw_A 85 SKLRNYRKDLAKLHRE 100 (102)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 4555555555555544
No 83
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=25.28 E-value=1.3e+02 Score=20.23 Aligned_cols=24 Identities=38% Similarity=0.630 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 024062 88 RKNVKSVEKELLQLEEDVKLLEEM 111 (273)
Q Consensus 88 rr~~~~l~~~~~~Le~~~~~le~~ 111 (273)
|++...++++.|.-.+...++|+.
T Consensus 13 Rkk~eeler~lrk~kk~iKklEde 36 (50)
T 1a92_A 13 RKKLEELERDLRKLKKKIKKLEED 36 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcc
Confidence 667777777777777777777775
No 84
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=25.05 E-value=1.9e+02 Score=20.51 Aligned_cols=18 Identities=28% Similarity=0.512 Sum_probs=9.2
Q ss_pred HhHHHHHHHHHHHHHHHH
Q 024062 86 KWRKNVKSVEKELLQLEE 103 (273)
Q Consensus 86 k~rr~~~~l~~~~~~Le~ 103 (273)
|-||+++++..|+..+.+
T Consensus 36 KL~Rk~DKl~~ele~l~~ 53 (65)
T 3sja_C 36 KNNRKLDSLDKEINNLKD 53 (65)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555544443
No 85
>3bhp_A UPF0291 protein YNZC; NESG, SR384, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.01A {Bacillus subtilis}
Probab=24.47 E-value=1e+02 Score=21.49 Aligned_cols=33 Identities=9% Similarity=0.148 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhhhccCCcChHhHHHHHHHHHHH
Q 024062 66 ELKKAADTLHQEERSGSKGRKWRKNVKSVEKEL 98 (273)
Q Consensus 66 ~l~e~~~~l~~~~~~~~~~~k~rr~~~~l~~~~ 98 (273)
+.+++..+|-++.+..+.+...+.|-.+||++-
T Consensus 5 ~~i~RINeLakK~K~~gLT~eEk~EQ~~LR~eY 37 (60)
T 3bhp_A 5 AKIARINELAAKAKAGVITEEEKAEQQKLRQEY 37 (60)
T ss_dssp HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 446666677666666777766666666666553
No 86
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=24.12 E-value=1.6e+02 Score=21.66 Aligned_cols=54 Identities=19% Similarity=0.217 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCC-cChHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 024062 58 TELGKKARELKKAADTLHQEERSGS-KGRKWRKNVKSVEKELLQLEEDVKLLEEM 111 (273)
Q Consensus 58 ~~i~~~~~~l~e~~~~l~~~~~~~~-~~~k~rr~~~~l~~~~~~Le~~~~~le~~ 111 (273)
.+++.|.++.+|...-+|.+-.+-+ ++..-..+.+.++.....|+++.+++...
T Consensus 9 eqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E 63 (81)
T 2jee_A 9 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQ 63 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3455555566665555444322111 11122223334444444455555555554
No 87
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=23.89 E-value=1.1e+02 Score=20.67 Aligned_cols=26 Identities=15% Similarity=0.187 Sum_probs=15.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHh
Q 024062 86 KWRKNVKSVEKELLQLEEDVKLLEEM 111 (273)
Q Consensus 86 k~rr~~~~l~~~~~~Le~~~~~le~~ 111 (273)
+-|++...+++++..|.++.+.+...
T Consensus 23 aLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 23 LLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666665554
No 88
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=23.81 E-value=2.8e+02 Score=22.22 Aligned_cols=62 Identities=13% Similarity=0.068 Sum_probs=34.4
Q ss_pred cChHHHHHHHHHHHHHHH-HHHHHHHHHHhhhccCCcCh-----HhHHHHHHHHHHHHHHHHHHHHHH
Q 024062 48 ITRSQYIKEATELGKKAR-ELKKAADTLHQEERSGSKGR-----KWRKNVKSVEKELLQLEEDVKLLE 109 (273)
Q Consensus 48 is~~~~~~~~~~i~~~~~-~l~e~~~~l~~~~~~~~~~~-----k~rr~~~~l~~~~~~Le~~~~~le 109 (273)
+|..-|.+.+.+++.--. +--+..+.++...+.|-.+. ..|++...+.+..+.|+++.+.++
T Consensus 6 ~T~~g~~~L~~El~~L~~~~rp~i~~~i~~A~~~gDlsENaeY~aak~~q~~~e~ri~~Le~~L~~a~ 73 (158)
T 1grj_A 6 MTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIKDIEAKLSNAQ 73 (158)
T ss_dssp EEHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTCCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred cCHHHHHHHHHHHHHHHhccchhhHhhHHHHHhcccccccchhhhHHHHHHHHHHHHHHHHHHHhhCe
Confidence 777777777777773322 33355556655444444331 133455555666666666665544
No 89
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=23.62 E-value=7e+02 Score=26.72 Aligned_cols=37 Identities=24% Similarity=0.461 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh-----hhhhhhhHHHHhhcc
Q 024062 5 FPEYVVALATIVGSVLFSIFGG-----VGIACLPLGLIFSFI 41 (273)
Q Consensus 5 f~~f~i~~l~~iG~~lfv~y~g-----vGlaalPi~LI~~f~ 41 (273)
++..+..++++++.+..+++.+ +.++.+|+-.+-.+.
T Consensus 874 l~~~~~~~~~~i~~~~~~~~~~~~l~lv~l~~~~~~~~~~~~ 915 (1321)
T 4f4c_A 874 FSTVITTLVSMVAGIGLAFFYGWQMALLIIAILPIVAFGQYL 915 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHeeeehHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666555543 455666766555444
No 90
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=23.61 E-value=87 Score=19.25 Aligned_cols=19 Identities=37% Similarity=0.674 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024062 6 PEYVVALATIVGSVLFSIF 24 (273)
Q Consensus 6 ~~f~i~~l~~iG~~lfv~y 24 (273)
.+|+.-+.+.+|.++|.++
T Consensus 4 ~vYt~ll~~tlgiiFFAI~ 22 (32)
T 3arc_T 4 ITYVFIFACIIALFFFAIF 22 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 4688888999999998875
No 91
>2l16_A SEC-independent protein translocase protein tatad; membrane protein, protein transport; NMR {Bacillus subtilis}
Probab=23.56 E-value=1.8e+02 Score=21.02 Aligned_cols=45 Identities=16% Similarity=0.167 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCcChHhHHHHHHHHHHHHHHHH
Q 024062 55 KEATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEE 103 (273)
Q Consensus 55 ~~~~~i~~~~~~l~e~~~~l~~~~~~~~~~~k~rr~~~~l~~~~~~Le~ 103 (273)
+....+.+-..+.++..+..+++.+ ......++++.++++....+
T Consensus 28 ~l~r~lGk~ir~fK~~~~~~~~e~~----~~~~~~el~~~~~~~~~~~~ 72 (78)
T 2l16_A 28 EIGRAAGRTLLEFKSATKSLVSGDE----KEEKSAELTAVKQDKNAGLE 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCC------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhhh----HHhhHHHHHHHHHHHHHHHH
Confidence 4444555555555555555554322 12233466666666555443
No 92
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=22.97 E-value=1.5e+02 Score=21.16 Aligned_cols=60 Identities=5% Similarity=0.002 Sum_probs=38.8
Q ss_pred hhhhhhhHHHHhhcccCC--CcccChHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcChHh
Q 024062 27 VGIACLPLGLIFSFIRRP--KAVITRSQYIKEATELGKKARELKKAADTLHQEERSGSKGRKW 87 (273)
Q Consensus 27 vGlaalPi~LI~~f~~Rp--k~~is~~~~~~~~~~i~~~~~~l~e~~~~l~~~~~~~~~~~k~ 87 (273)
.+|+-+|.+-|+....-- .+ +|.+-.......++.|..++.+..-++-+..+....+..|
T Consensus 2 ~~~s~lp~~~v~~iaes~Gi~~-lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~D 63 (70)
T 1taf_B 2 LYGSSISAESMKVIAESIGVGS-LSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRD 63 (70)
T ss_dssp CCSCCCCHHHHHHHHHHTTCCC-BCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHH
T ss_pred cccccCCHHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHH
Confidence 356778888777653211 13 7777767788888888888888777776544433444444
No 93
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=22.54 E-value=75 Score=19.62 Aligned_cols=20 Identities=15% Similarity=0.027 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 024062 57 ATELGKKARELKKAADTLHQ 76 (273)
Q Consensus 57 ~~~i~~~~~~l~e~~~~l~~ 76 (273)
++++++++++|+..-..++.
T Consensus 2 MnQLEdKVEell~~~~~le~ 21 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTN 21 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHH
Confidence 45666666677666655554
No 94
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=22.49 E-value=2e+02 Score=19.93 Aligned_cols=24 Identities=17% Similarity=0.153 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 024062 53 YIKEATELGKKARELKKAADTLHQ 76 (273)
Q Consensus 53 ~~~~~~~i~~~~~~l~e~~~~l~~ 76 (273)
..+.+....+-.+++.|+|+.|+.
T Consensus 13 v~ev~~iM~~ni~kvlERGekL~~ 36 (63)
T 1urq_A 13 ASGVVGELARARLALDERGQKLSD 36 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666667788888888875
No 95
>2jvd_A UPF0291 protein YNZC; solution structure, construct optimization, cytoplasm, structural genomics, unknown function, PSI-2; NMR {Bacillus subtilis}
Probab=22.43 E-value=1.3e+02 Score=20.65 Aligned_cols=32 Identities=9% Similarity=0.152 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhhhccCCcChHhHHHHHHHHHH
Q 024062 66 ELKKAADTLHQEERSGSKGRKWRKNVKSVEKE 97 (273)
Q Consensus 66 ~l~e~~~~l~~~~~~~~~~~k~rr~~~~l~~~ 97 (273)
+.+++...|-++.+..+.+...+.|-.+||++
T Consensus 5 ~~i~RINeLakK~K~~gLT~eEk~EQ~~LR~e 36 (54)
T 2jvd_A 5 AKIARINELAAKAKAGVITEEEKAEQQKLRQE 36 (54)
T ss_dssp HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 34556666666666666666666666665554
No 96
>3g9w_C Integrin beta-1D; protein-protein complex, PH domain superfold, PTB domain, HE bundle, intrinsically unstructured, cell adhesion; 2.17A {Homo sapiens} PDB: 1kup_B 1kuz_B
Probab=22.39 E-value=44 Score=22.64 Aligned_cols=14 Identities=29% Similarity=0.228 Sum_probs=11.0
Q ss_pred hHhHHHHHHHHHHH
Q 024062 85 RKWRKNVKSVEKEL 98 (273)
Q Consensus 85 ~k~rr~~~~l~~~~ 98 (273)
..||||+.+|++|.
T Consensus 8 i~DrREyakFe~Er 21 (52)
T 3g9w_C 8 IHDRREFAKFEKEK 21 (52)
T ss_dssp HHHHHHHHHHHHHG
T ss_pred eehHHHHHHHHHHH
Confidence 57999999987763
No 97
>1ezj_A Nucleocapsid phosphoprotein; four stranded coiled coil, viral polymerase, T viral protein, transferase; 1.90A {Sendai virus} SCOP: h.1.14.1
Probab=22.29 E-value=1.9e+02 Score=22.26 Aligned_cols=29 Identities=17% Similarity=0.251 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcccCcc
Q 024062 87 WRKNVKSVEKELLQLEEDVKLLEEMYPQGEK 117 (273)
Q Consensus 87 ~rr~~~~l~~~~~~Le~~~~~le~~y~~~~~ 117 (273)
.+..+++.++|+..+.+-++++.|. |.|+
T Consensus 71 n~~~L~QIQ~ei~s~rd~hkR~~E~--QkEQ 99 (115)
T 1ezj_A 71 NKQLLKQIQESVESFRDIYKRFSEY--QKEQ 99 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh--HHHH
Confidence 3456666677777777777777665 5543
No 98
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=21.98 E-value=84 Score=18.67 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024062 54 IKEATELGKKARELKKAADTLH 75 (273)
Q Consensus 54 ~~~~~~i~~~~~~l~e~~~~l~ 75 (273)
+.+-.+|..+++.|+|.-++++
T Consensus 5 kkELtQIK~kvDsLLe~Le~~~ 26 (28)
T 1txp_A 5 KKELTQIKQKVDSLLENLEKIE 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 4567778888888888766654
No 99
>2f95_B Sensory rhodopsin II transducer; membrane protein complex, signal transduction, photocycle ST membrane protein; HET: BOG RET; 2.20A {Natronomonas pharaonis} SCOP: f.17.4.1
Probab=21.77 E-value=47 Score=25.34 Aligned_cols=17 Identities=18% Similarity=0.122 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024062 94 VEKELLQLEEDVKLLEE 110 (273)
Q Consensus 94 l~~~~~~Le~~~~~le~ 110 (273)
+++.+.++++..++++.
T Consensus 128 l~~~~~~~~~~~~~~~~ 144 (163)
T 2f95_B 128 VRTSLEDAKNAREDAEQ 144 (163)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 100
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=21.57 E-value=1.4e+02 Score=18.61 Aligned_cols=23 Identities=22% Similarity=0.419 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024062 88 RKNVKSVEKELLQLEEDVKLLEE 110 (273)
Q Consensus 88 rr~~~~l~~~~~~Le~~~~~le~ 110 (273)
||+....+++..+|++....|++
T Consensus 6 RrKn~a~qqDIddlkrQN~~Le~ 28 (34)
T 1a93_B 6 RRKNDTHQQDIDDLKRQNALLEQ 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhHhhHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 101
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=21.50 E-value=43 Score=24.19 Aligned_cols=17 Identities=24% Similarity=0.464 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024062 90 NVKSVEKELLQLEEDVK 106 (273)
Q Consensus 90 ~~~~l~~~~~~Le~~~~ 106 (273)
..+.++.|+|.|||.++
T Consensus 51 q~~lLK~EIRRlERnqe 67 (71)
T 3bbp_D 51 QIKLLKSEIRRLERNQE 67 (71)
T ss_dssp HHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHhhHh
Confidence 44556666666666544
No 102
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=21.43 E-value=88 Score=23.69 Aligned_cols=25 Identities=8% Similarity=0.295 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Q 024062 89 KNVKSVEKELLQLEEDVKLLEEMYP 113 (273)
Q Consensus 89 r~~~~l~~~~~~Le~~~~~le~~y~ 113 (273)
.|++..|+.|+.||..+.+++..|.
T Consensus 50 ~Emq~Ir~tvyeLE~~h~kmKq~YE 74 (92)
T 3vp9_A 50 AEMQQIRNTVYERELTHRKMKDAYE 74 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888888888888877654
No 103
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=21.34 E-value=1.6e+02 Score=19.07 Aligned_cols=21 Identities=29% Similarity=0.433 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024062 55 KEATELGKKARELKKAADTLH 75 (273)
Q Consensus 55 ~~~~~i~~~~~~l~e~~~~l~ 75 (273)
++.++++.+-.+|-|+-..|+
T Consensus 10 ~r~k~le~~naeLEervstLq 30 (42)
T 2oqq_A 10 NRVKDLENKNSELEERLSTLQ 30 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444
No 104
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=20.56 E-value=4.3e+02 Score=24.19 Aligned_cols=68 Identities=10% Similarity=0.115 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCC-cC-----------hHhHHHHHHHHHHHHHHHHHHHHHHHhcccCcccc
Q 024062 52 QYIKEATELGKKARELKKAADTLHQEERSGS-KG-----------RKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAE 119 (273)
Q Consensus 52 ~~~~~~~~i~~~~~~l~e~~~~l~~~~~~~~-~~-----------~k~rr~~~~l~~~~~~Le~~~~~le~~y~~~~~~~ 119 (273)
++.+.+..+..+-+++-+..+.++....... ++ ...+.++..++-.+..|+...+.++....+-|+.+
T Consensus 317 ~l~~~~~~~~~k~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~ 396 (406)
T 4dyl_A 317 ELAVATEMVFRRQEMVTQLQQELRNEEENTHPRERVQLLGKRQVLQEALQGLQVALCSQAKLQAQQELLQTKLEHLGPGE 396 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3444444555455555555555554322111 11 13456777788888888888888888877777654
Done!