BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024063
(273 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3O1L|A Chain A, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Pspto_4314) From Pseudomonas Syringae Pv. Tomato Str.
Dc3000 At 2.20 A Resolution
pdb|3O1L|B Chain B, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Pspto_4314) From Pseudomonas Syringae Pv. Tomato Str.
Dc3000 At 2.20 A Resolution
Length = 302
Score = 155 bits (393), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 97/240 (40%), Positives = 124/240 (51%), Gaps = 41/240 (17%)
Query: 39 RVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERH 98
R+ D K +V + AS++ HCL D L+ W +L +I CVISNH + +E H
Sbjct: 98 RITDSAQKKRVVLXASRESHCLADLLHRWHSDELDCDIACVISNH-----QDLRSXVEWH 152
Query: 99 GIPYHYLCA-----KXXXXXXXXXXXVQNTDFLVLARYMQPVPLQKEAXXXXXXXXXXXX 153
IPY+++ + D +VLARY Q +P Q
Sbjct: 153 DIPYYHVPVDPKDKEPAFAEVSRLVGHHQADVVVLARYXQILPPQ--------------- 197
Query: 154 XXXXXXXFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVT 213
R Y VINIHH LPSF G KP QA GVKLIGAT H+VT
Sbjct: 198 ---------------LCREYAHQVINIHHSFLPSFVGAKPYHQASLRGVKLIGATCHYVT 242
Query: 214 EELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVVF 273
EELDAGPIIEQ V RVSHRD++ V+ DVEK LA+ ++++ E RVL ++ NKTVVF
Sbjct: 243 EELDAGPIIEQDVVRVSHRDSIENXVRFGRDVEKXVLARGLRAHLEDRVLVHD-NKTVVF 301
>pdb|3OBI|A Chain A, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Np_949368) From Rhodopseudomonas Palustris Cga009 At
1.95 A Resolution
pdb|3OBI|B Chain B, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Np_949368) From Rhodopseudomonas Palustris Cga009 At
1.95 A Resolution
pdb|3OBI|C Chain C, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Np_949368) From Rhodopseudomonas Palustris Cga009 At
1.95 A Resolution
pdb|3OBI|D Chain D, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Np_949368) From Rhodopseudomonas Palustris Cga009 At
1.95 A Resolution
Length = 288
Score = 139 bits (350), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 90/237 (37%), Positives = 117/237 (49%), Gaps = 40/237 (16%)
Query: 42 DIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIP 101
D + + KV +L S+ +HCL D LY W+ G L T ++SNH R S + IP
Sbjct: 85 DRETRRKVXLLVSQSDHCLADILYRWRVGDLHXIPTAIVSNHPRETFSG----FDFGDIP 140
Query: 102 -YHYLCAKXXXXXXXXXXXV----QNTDFLVLARYMQPVPLQKEAXXXXXXXXXXXXXXX 156
YH+ K +TD +VLARY Q
Sbjct: 141 FYHFPVNKDTRRQQEAAITALIAQTHTDLVVLARYXQ----------------------- 177
Query: 157 XXXXFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEEL 216
ILS + INIHH LP FKG KP QAFD GVKLIGAT+H+VT L
Sbjct: 178 -------ILSDEXSARLAGRCINIHHSFLPGFKGAKPYHQAFDRGVKLIGATAHYVTSAL 230
Query: 217 DAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVVF 273
D GPII+Q VER+SHRD V+K D+E++ L++A+ + + RV+ KTVVF
Sbjct: 231 DEGPIIDQDVERISHRDTPADLVRKGRDIERRVLSRALHYHLDDRVI-LNGRKTVVF 286
>pdb|3LOU|A Chain A, Crystal Structure Of Formyltetrahydrofolate Deformylase
(yp_105254.1) From Burkholderia Mallei Atcc 23344 At
1.90 A Resolution
pdb|3LOU|B Chain B, Crystal Structure Of Formyltetrahydrofolate Deformylase
(yp_105254.1) From Burkholderia Mallei Atcc 23344 At
1.90 A Resolution
pdb|3LOU|C Chain C, Crystal Structure Of Formyltetrahydrofolate Deformylase
(yp_105254.1) From Burkholderia Mallei Atcc 23344 At
1.90 A Resolution
pdb|3LOU|D Chain D, Crystal Structure Of Formyltetrahydrofolate Deformylase
(yp_105254.1) From Burkholderia Mallei Atcc 23344 At
1.90 A Resolution
Length = 292
Score = 132 bits (332), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 86/238 (36%), Positives = 116/238 (48%), Gaps = 43/238 (18%)
Query: 42 DIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNH-DRGPNSHVIRFLERHGI 100
D+ + KV + SK EHCL D L+ W+ G+L +I ++SNH D P +HG+
Sbjct: 91 DVAARPKVLIXVSKLEHCLADLLFRWKXGELKXDIVGIVSNHPDFAP------LAAQHGL 144
Query: 101 PYHY--LCAKXXXXXXXXXXXVQNT---DFLVLARYMQPVPLQKEAXXXXXXXXXXXXXX 155
P+ + + A V T + ++LARY Q
Sbjct: 145 PFRHFPITADTKAQQEAQWLDVFETSGAELVILARYXQ---------------------- 182
Query: 156 XXXXXFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEE 215
+LS + INIHH LP FKG KP QA GVKLIGAT+HFVT++
Sbjct: 183 --------VLSPEASARLANRAINIHHSFLPGFKGAKPYHQAHARGVKLIGATAHFVTDD 234
Query: 216 LDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVVF 273
LD GPIIEQ+VERV H + DVE LA+A+K++ E RV ++TVVF
Sbjct: 235 LDEGPIIEQVVERVDHSYRPEQLLAVGRDVECITLARAVKAFIERRVF-LNGDRTVVF 291
>pdb|3NRB|A Chain A, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Puru, Pp_1943) From Pseudomonas Putida Kt2440 At 2.05 A
Resolution
pdb|3NRB|B Chain B, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Puru, Pp_1943) From Pseudomonas Putida Kt2440 At 2.05 A
Resolution
pdb|3NRB|C Chain C, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Puru, Pp_1943) From Pseudomonas Putida Kt2440 At 2.05 A
Resolution
pdb|3NRB|D Chain D, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Puru, Pp_1943) From Pseudomonas Putida Kt2440 At 2.05 A
Resolution
Length = 287
Score = 132 bits (331), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 90/238 (37%), Positives = 117/238 (49%), Gaps = 41/238 (17%)
Query: 41 PDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGI 100
P D K KV + SK +HCL D LY + G+L E+ +ISNH R + I
Sbjct: 84 PRTDRK-KVVIXVSKFDHCLGDLLYRHRLGELDXEVVGIISNHPR----EALSVSLVGDI 138
Query: 101 PYHYL----CAKXXXXXXXXXXXVQN-TDFLVLARYMQPVPLQKEAXXXXXXXXXXXXXX 155
P+HYL K Q+ D +VLARY Q +
Sbjct: 139 PFHYLPVTPATKAAQESQIKNIVTQSQADLIVLARYXQILS------------------- 179
Query: 156 XXXXXFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEE 215
+ LSG+ INIHH LP FKG KP QA GVKLIGAT+HFVT +
Sbjct: 180 ---DDLSAFLSGR--------CINIHHSFLPGFKGAKPYHQAHTRGVKLIGATAHFVTAD 228
Query: 216 LDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVVF 273
LD GPII Q VE VSHRD+ V+K D+E++ L++A+ + E R++ +TVVF
Sbjct: 229 LDEGPIIAQDVEHVSHRDSAEDLVRKGRDIERRVLSRAVLLFLEDRLI-VNGERTVVF 285
>pdb|3N0V|A Chain A, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Pp_0327) From Pseudomonas Putida Kt2440 At 2.25 A
Resolution
pdb|3N0V|B Chain B, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Pp_0327) From Pseudomonas Putida Kt2440 At 2.25 A
Resolution
pdb|3N0V|C Chain C, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Pp_0327) From Pseudomonas Putida Kt2440 At 2.25 A
Resolution
pdb|3N0V|D Chain D, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Pp_0327) From Pseudomonas Putida Kt2440 At 2.25 A
Resolution
Length = 286
Score = 118 bits (296), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 83/264 (31%), Positives = 119/264 (45%), Gaps = 45/264 (17%)
Query: 18 EQMDEDFFK--LSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVE 75
+ DE F+ L++ A + + + KV + SK +HCL D LY + G+L +
Sbjct: 60 DDFDEAGFRAGLAERSEAFGXAFELTAPNHRPKVVIXVSKADHCLNDLLYRQRIGQLGXD 119
Query: 76 ITCVISNH-DRGPNSHVIRFLERHGIPYHYLCAKXXXXXXXXXXXVQ-----NTDFLVLA 129
+ V+SNH D P +H H IPY++ +Q + ++LA
Sbjct: 120 VVAVVSNHPDLEPLAHW------HKIPYYHFALDPKDKPGQERKVLQVIEETGAELVILA 173
Query: 130 RYMQPVPLQKEAXXXXXXXXXXXXXXXXXXXFNMILSGKFLRSYGKDVINIHHGLLPSFK 189
RY Q +LS + R INIHH LLP FK
Sbjct: 174 RYXQ------------------------------VLSPELCRRLDGWAINIHHSLLPGFK 203
Query: 190 GGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQC 249
G KP QA++ GVK +GAT+H++ +LD GPII Q VE V H + K D+E
Sbjct: 204 GAKPYHQAYNKGVKXVGATAHYINNDLDEGPIIAQGVEVVDHSHYPEDLIAKGRDIECLT 263
Query: 250 LAKAIKSYCELRVLPYEMNKTVVF 273
LA+A+ + E RV N+TVV
Sbjct: 264 LARAVGYHIERRVF-LNANRTVVL 286
>pdb|3KCQ|A Chain A, Crystal Structure Of Phosphoribosylglycinamide
Formyltransferase From Anaplasma Phagocytophilum
pdb|3KCQ|B Chain B, Crystal Structure Of Phosphoribosylglycinamide
Formyltransferase From Anaplasma Phagocytophilum
pdb|3KCQ|C Chain C, Crystal Structure Of Phosphoribosylglycinamide
Formyltransferase From Anaplasma Phagocytophilum
pdb|3KCQ|D Chain D, Crystal Structure Of Phosphoribosylglycinamide
Formyltransferase From Anaplasma Phagocytophilum
Length = 215
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/95 (43%), Positives = 52/95 (54%)
Query: 161 FNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGP 220
F IL KF+ + +INIH LLPSFKG +QA+ AGVK+ G T H+V +ELDAGP
Sbjct: 91 FMSILPEKFVTDWHHKIINIHPSLLPSFKGLNAQEQAYKAGVKIAGCTLHYVYQELDAGP 150
Query: 221 IIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIK 255
II Q V D + + E C K +K
Sbjct: 151 IIMQAAVPVLREDTAESLASRILAAEHVCYPKGVK 185
>pdb|3P9X|A Chain A, Crystal Structure Of Phosphoribosylglycinamide
Formyltransferase From Bacillus Halodurans
pdb|3P9X|B Chain B, Crystal Structure Of Phosphoribosylglycinamide
Formyltransferase From Bacillus Halodurans
Length = 211
Score = 74.7 bits (182), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 84/205 (40%), Gaps = 39/205 (19%)
Query: 48 KVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA 107
+VA+ AS + + G+LP E+ +I++ P + V+ ++ H IP L
Sbjct: 4 RVAIFASGSGTNAEAIIQSQKAGQLPCEVALLITDK---PGAKVVERVKVHEIPVCALDP 60
Query: 108 KXXXXXXXXXXXV------QNTDFLVLARYMQPVPLQKEAXXXXXXXXXXXXXXXXXXXF 161
K V + DF+VLA YM+
Sbjct: 61 KTYPSKEAYEIEVVQQLKEKQIDFVVLAGYMR---------------------------- 92
Query: 162 NMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPI 221
++ L +Y ++NIH LLP+F G +QA A VK+ G T H+V E +D GPI
Sbjct: 93 --LVGPTLLGAYEGRIVNIHPSLLPAFPGLHAIEQAIRANVKVTGVTIHYVDEGMDTGPI 150
Query: 222 IEQMVERVSHRDNLRTFVQKSEDVE 246
I Q + D L T K + VE
Sbjct: 151 IAQEAVSIEEEDTLETLTTKIQAVE 175
>pdb|2YWR|A Chain A, Crystal Structure Of Gar Transformylase From Aquifex
Aeolicus
Length = 216
Score = 71.2 bits (173), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 57/103 (55%)
Query: 161 FNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGP 220
F ILS FL+ + VINIH L+P+F+G KQA + GVK G T H V E +DAGP
Sbjct: 89 FXRILSHNFLKYFPNKVINIHPSLIPAFQGLHAQKQAVEFGVKFSGCTVHIVDESVDAGP 148
Query: 221 IIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVL 263
+I Q V V D+ T + E + L + ++ + + R++
Sbjct: 149 VIVQAVVPVLPEDDENTLADRILKWEHKILPQTVQWFAQDRII 191
>pdb|1ZLX|A Chain A, The Apo Structure Of Human Glycinamide Ribonucleotide
Transformylase
Length = 203
Score = 71.2 bits (173), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 53/95 (55%)
Query: 161 FNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGP 220
F ILSG F++ + +NIH LLPSFKG +QA + GV + G T HFV E++DAG
Sbjct: 88 FXRILSGPFVQKWNGKXLNIHPSLLPSFKGSNAHEQALETGVTVTGCTVHFVAEDVDAGQ 147
Query: 221 IIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIK 255
II Q V D + T ++ + E + A++
Sbjct: 148 IILQEAVPVKRGDTVATLSERVKLAEHKIFPAALQ 182
>pdb|1ZLY|A Chain A, The Structure Of Human Glycinamide Ribonucleotide
Transformylase In Complex With Alpha,beta-n-
(hydroxyacetyl)-d-ribofuranosylamine And 10-formyl-5,8,
Dideazafolate
Length = 203
Score = 71.2 bits (173), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 54/95 (56%)
Query: 161 FNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGP 220
F ILSG F++ + ++NIH LLPSFKG +QA + GV + G T HFV E++DAG
Sbjct: 88 FMRILSGPFVQKWNGKMLNIHPSLLPSFKGSNAHEQALETGVTVTGCTVHFVAEDVDAGQ 147
Query: 221 IIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIK 255
II Q V D + T ++ + E + A++
Sbjct: 148 IILQEAVPVKRGDTVATLSERVKLAEHKIFPAALQ 182
>pdb|1MEO|A Chain A, Human Glycinamide Ribonucleotide Transformylase At Ph 4.2
pdb|1NJS|A Chain A, Human Gar Tfase In Complex With Hydrolyzed Form Of 10-
Trifluoroacetyl-5,10-Dideaza-Acyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1NJS|B Chain B, Human Gar Tfase In Complex With Hydrolyzed Form Of 10-
Trifluoroacetyl-5,10-Dideaza-Acyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RBM|A Chain A, Human Gar Tfase Complex Structure With Polyglutamated 10-
(Trifluoroacetyl)-5,10-Dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RBM|B Chain B, Human Gar Tfase Complex Structure With Polyglutamated 10-
(Trifluoroacetyl)-5,10-Dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RBQ|A Chain A, Human Gar Tfase Complex Structure With
10-(Trifluoroacetyl)-
5,10-Dideazaacyclic-5,6,7,8-Tetrahydrofolic Acid
pdb|1RBQ|B Chain B, Human Gar Tfase Complex Structure With
10-(Trifluoroacetyl)-
5,10-Dideazaacyclic-5,6,7,8-Tetrahydrofolic Acid
pdb|1RBQ|C Chain C, Human Gar Tfase Complex Structure With
10-(Trifluoroacetyl)-
5,10-Dideazaacyclic-5,6,7,8-Tetrahydrofolic Acid
pdb|1RBQ|D Chain D, Human Gar Tfase Complex Structure With
10-(Trifluoroacetyl)-
5,10-Dideazaacyclic-5,6,7,8-Tetrahydrofolic Acid
pdb|1RBY|A Chain A, Human Gar Tfase Complex Structure With
10-(trifluoroacetyl)-
5,10-dideazaacyclic-5,6,7,8-tetrahydrofolic Acid And
Substrate Beta-gar
pdb|1RBY|B Chain B, Human Gar Tfase Complex Structure With
10-(trifluoroacetyl)-
5,10-dideazaacyclic-5,6,7,8-tetrahydrofolic Acid And
Substrate Beta-gar
pdb|1RBY|C Chain C, Human Gar Tfase Complex Structure With
10-(trifluoroacetyl)-
5,10-dideazaacyclic-5,6,7,8-tetrahydrofolic Acid And
Substrate Beta-gar
pdb|1RBY|D Chain D, Human Gar Tfase Complex Structure With
10-(trifluoroacetyl)-
5,10-dideazaacyclic-5,6,7,8-tetrahydrofolic Acid And
Substrate Beta-gar
pdb|1RBZ|A Chain A, Human Gar Tfase Complex Structure With Polyglutamated 10-
(Trifluoroacetyl)-5,10-Dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RBZ|B Chain B, Human Gar Tfase Complex Structure With Polyglutamated 10-
(Trifluoroacetyl)-5,10-Dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RC0|A Chain A, Human Gar Tfase Complex Structure With Polyglutamated 10-
(trifluoroacetyl)-5,10-dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RC0|B Chain B, Human Gar Tfase Complex Structure With Polyglutamated 10-
(trifluoroacetyl)-5,10-dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RC1|A Chain A, Human Gar Tfase Complex Structure With Polyglutamated 10-
(Trifluoroacetyl)-5,10-Dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RC1|B Chain B, Human Gar Tfase Complex Structure With Polyglutamated 10-
(Trifluoroacetyl)-5,10-Dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
Length = 209
Score = 71.2 bits (173), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 54/95 (56%)
Query: 161 FNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGP 220
F ILSG F++ + ++NIH LLPSFKG +QA + GV + G T HFV E++DAG
Sbjct: 88 FMRILSGPFVQKWNGKMLNIHPSLLPSFKGSNAHEQALETGVTVTGCTVHFVAEDVDAGQ 147
Query: 221 IIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIK 255
II Q V D + T ++ + E + A++
Sbjct: 148 IILQEAVPVKRGDTVATLSERVKLAEHKIFPAALQ 182
>pdb|1MEJ|B Chain B, Human Glycinamide Ribonucleotide Transformylase Domain At
Ph 8.5
pdb|1MEJ|A Chain A, Human Glycinamide Ribonucleotide Transformylase Domain At
Ph 8.5
pdb|1MEJ|C Chain C, Human Glycinamide Ribonucleotide Transformylase Domain At
Ph 8.5
pdb|1MEN|A Chain A, Complex Structure Of Human Gar Tfase And Substrate
Beta-Gar
pdb|1MEN|B Chain B, Complex Structure Of Human Gar Tfase And Substrate
Beta-Gar
pdb|1MEN|C Chain C, Complex Structure Of Human Gar Tfase And Substrate
Beta-Gar
Length = 223
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 54/95 (56%)
Query: 161 FNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGP 220
F ILSG F++ + ++NIH LLPSFKG +QA + GV + G T HFV E++DAG
Sbjct: 99 FMRILSGPFVQKWNGKMLNIHPSLLPSFKGSNAHEQALETGVTVTGCTVHFVAEDVDAGQ 158
Query: 221 IIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIK 255
II Q V D + T ++ + E + A++
Sbjct: 159 IILQEAVPVKRGDTVATLSERVKLAEHKIFPAALQ 193
>pdb|3AUF|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase 1 From Symbiobacterium Toebii
Length = 229
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 90/222 (40%), Gaps = 39/222 (17%)
Query: 48 KVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGI------P 101
++ VL S L L G +EG++P + VIS+ +++ + R G+ P
Sbjct: 24 RIGVLISGSGTNLQAILDGCREGRIPGRVAVVISDR---ADAYGLERARRAGVDALHMDP 80
Query: 102 YHYLCAKXXXXXXXXXXXVQNTDFLVLARYMQPVPLQKEAXXXXXXXXXXXXXXXXXXXF 161
Y D + LA YM+
Sbjct: 81 AAYPSRTAFDAALAERLQAYGVDLVCLAGYMR---------------------------- 112
Query: 162 NMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPI 221
++ G L ++ ++NIH LLP+F G + +QA + GVK+ G T HFVT +D GPI
Sbjct: 113 --LVRGPMLTAFPNRILNIHPSLLPAFPGLEAQRQALEHGVKVAGCTVHFVTAGVDEGPI 170
Query: 222 IEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVL 263
I Q V D + ++ E + +AI+ + E R++
Sbjct: 171 ILQAAVPVLEGDTVEDLRRRILAEEHRIYPEAIRLFAEGRLV 212
>pdb|4DS3|A Chain A, Crystal Structure Of Phosphoribosylglycinamide
Formyltransferase From Brucella Melitensis
Length = 209
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 50/95 (52%)
Query: 164 ILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIE 223
+LSG+F+ Y ++NIH LLP F G ++A DAG+KL G T H VTE +D GPI+
Sbjct: 98 LLSGRFIAPYEGRILNIHPSLLPLFPGLHTHQRALDAGMKLAGCTVHLVTEGMDEGPILA 157
Query: 224 QMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYC 258
Q V D T + E + A++ +
Sbjct: 158 QAAVPVLDGDTAETLAARVLKAEHRLYPLALQKFA 192
>pdb|3AV3|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase 1 From Geobacillus Kaustophilus
Length = 212
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%)
Query: 161 FNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGP 220
+ ++ L +Y ++NIH LLP+F G QA+ AGV G T H+V E D GP
Sbjct: 91 YXRLIGPTLLSAYEGKIVNIHPSLLPAFPGKDAIGQAYRAGVSETGVTVHYVDEGXDTGP 150
Query: 221 IIEQMV 226
+I Q V
Sbjct: 151 VIAQRV 156
>pdb|1GRC|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase From Escherichia Coli At 3.0 Angstroms
Resolution: A Target Enzyme For Chemotherapy
pdb|1GRC|B Chain B, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase From Escherichia Coli At 3.0 Angstroms
Resolution: A Target Enzyme For Chemotherapy
pdb|1GAR|A Chain A, Towards Structure-Based Drug Design: Crystal Structure Of
A Multisubstrate Adduct Complex Of Glycinamide
Ribonucleotide Transformylase At 1.96 Angstroms
Resolution
pdb|1GAR|B Chain B, Towards Structure-Based Drug Design: Crystal Structure Of
A Multisubstrate Adduct Complex Of Glycinamide
Ribonucleotide Transformylase At 1.96 Angstroms
Resolution
pdb|1C2T|A Chain A, New Insights Into Inhibitor Design From The Crystal
Structure And Nmr Studies Of E. Coli Gar Transformylase
In Complex With Beta-Gar And
10-Formyl-5,8,10-Trideazafolic Acid.
pdb|1C2T|B Chain B, New Insights Into Inhibitor Design From The Crystal
Structure And Nmr Studies Of E. Coli Gar Transformylase
In Complex With Beta-Gar And
10-Formyl-5,8,10-Trideazafolic Acid.
pdb|1JKX|A Chain A, Unexpected Formation Of An Epoxide-Derived Multisubstrate
Adduct Inhibitor On The Active Site Of Gar
Transformylase
pdb|1JKX|B Chain B, Unexpected Formation Of An Epoxide-Derived Multisubstrate
Adduct Inhibitor On The Active Site Of Gar
Transformylase
pdb|1JKX|C Chain C, Unexpected Formation Of An Epoxide-Derived Multisubstrate
Adduct Inhibitor On The Active Site Of Gar
Transformylase
pdb|1JKX|D Chain D, Unexpected Formation Of An Epoxide-Derived Multisubstrate
Adduct Inhibitor On The Active Site Of Gar
Transformylase
pdb|1CDE|A Chain A, Structures Of Apo And Complexed Escherichia Coli
Glycinamide Ribonucleotide Transformylase
pdb|1CDE|B Chain B, Structures Of Apo And Complexed Escherichia Coli
Glycinamide Ribonucleotide Transformylase
pdb|1CDE|C Chain C, Structures Of Apo And Complexed Escherichia Coli
Glycinamide Ribonucleotide Transformylase
pdb|1CDE|D Chain D, Structures Of Apo And Complexed Escherichia Coli
Glycinamide Ribonucleotide Transformylase
Length = 212
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 161 FNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGP 220
F ILS F+ Y ++NIH LLP + G +QA + G + G + HFVT+ELD GP
Sbjct: 88 FMRILSPAFVSHYAGRLLNIHPSLLPKYPGLHTHRQALENGDEEHGTSVHFVTDELDGGP 147
Query: 221 IIEQM---VERVSHRDNLRTFVQKSE 243
+I Q V D++ VQ E
Sbjct: 148 VILQAKVPVFAGDSEDDITARVQTQE 173
>pdb|1CDD|A Chain A, Structures Of Apo And Complexed Escherichia Coli
Glycinamide Ribonucleotide Transformylase
pdb|1CDD|B Chain B, Structures Of Apo And Complexed Escherichia Coli
Glycinamide Ribonucleotide Transformylase
Length = 212
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 161 FNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGP 220
F ILS F+ Y ++NIH LLP + G +QA + G + G + HFVT+ELD GP
Sbjct: 88 FMRILSPAFVSHYAGRLLNIHPSLLPKYPGLHTHRQALENGDEEHGTSVHFVTDELDGGP 147
Query: 221 IIEQM---VERVSHRDNLRTFVQKSE 243
+I Q V D++ VQ E
Sbjct: 148 VILQAKVPVFAGDSEDDITARVQTQE 173
>pdb|1C3E|A Chain A, New Insights Into Inhibitor Design From The Crystal
Structure And Nmr Studies Of E. Coli Gar Transformylate
In Complex With Beta-Gar And
10-Formyl-5,8,10-Trideazafolic Acid.
pdb|1C3E|B Chain B, New Insights Into Inhibitor Design From The Crystal
Structure And Nmr Studies Of E. Coli Gar Transformylate
In Complex With Beta-Gar And
10-Formyl-5,8,10-Trideazafolic Acid
Length = 209
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 161 FNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGP 220
F ILS F+ Y ++NIH LLP + G +QA + G + G + HFVT+ELD GP
Sbjct: 88 FMRILSPAFVSHYAGRLLNIHPSLLPKYPGLHTHRQALENGDEEHGTSVHFVTDELDGGP 147
Query: 221 IIEQM---VERVSHRDNLRTFVQKSE 243
+I Q V D++ VQ E
Sbjct: 148 VILQAKVPVFAGDSEDDITARVQTQE 173
>pdb|2GAR|A Chain A, A Ph-dependent Stablization Of An Active Site Loop
Observed From Low And High Ph Crystal Structures Of
Mutant Monomeric Glycinamide Ribonucleotide
Transformylase
pdb|3GAR|A Chain A, A Ph-dependent Stablization Of An Active Site Loop
Observed From Low And High Ph Crystal Structures Of
Mutant Monomeric Glycinamide Ribonucleotide
Transformylase
Length = 212
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 161 FNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGP 220
F ILS F+ Y ++NIH LLP + G +QA + G + G + HFVT+ELD GP
Sbjct: 88 FMRILSPAFVSHYAGRLLNIHPSLLPKYPGLHTHRQALENGDEEHGTSVHFVTDELDGGP 147
Query: 221 IIEQM---VERVSHRDNLRTFVQKSE 243
+I Q V D++ VQ E
Sbjct: 148 VILQAKVPVFAGDSEDDITARVQTQE 173
>pdb|4IQF|A Chain A, Crystal Structure Of Methyionyl-trna Formyltransferase
From Bacillus Anthracis
pdb|4IQF|B Chain B, Crystal Structure Of Methyionyl-trna Formyltransferase
From Bacillus Anthracis
pdb|4IQF|C Chain C, Crystal Structure Of Methyionyl-trna Formyltransferase
From Bacillus Anthracis
pdb|4IQF|D Chain D, Crystal Structure Of Methyionyl-trna Formyltransferase
From Bacillus Anthracis
Length = 317
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 50/109 (45%)
Query: 161 FNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGP 220
F I+ + L + IN+H LLP +GG P A G + G T + E+LDAG
Sbjct: 91 FGQIVPNEILEAPKYGCINVHASLLPELRGGAPIHYAIXEGKEKTGITIXYXVEKLDAGD 150
Query: 221 IIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNK 269
I+ Q+ + R+ + K + L+K + + ++ P + N+
Sbjct: 151 ILTQVEVEIEERETTGSLFDKLSEAGAHLLSKTVPLLIQGKLEPIKQNE 199
>pdb|3TQR|A Chain A, Structure Of The Phosphoribosylglycinamide
Formyltransferase (Purn) In Complex With Ches From
Coxiella Burnetii
Length = 215
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
Query: 161 FNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGP 220
F L F+ Y INIH LLP + G ++A AG G + H+VTE+LDAGP
Sbjct: 92 FXRKLGKAFVSHYSGRXINIHPSLLPKYTGLNTHERALAAGETEHGVSVHYVTEDLDAGP 151
Query: 221 IIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNK 269
+I Q ++ +D T + +E + + + R L Y N+
Sbjct: 152 LICQARLSITPQDTPETLKTRVHALEHIIYPEVLSWFAAGR-LNYHNNQ 199
>pdb|3DA8|A Chain A, Crystal Structure Of Purn From Mycobacterium Tuberculosis
pdb|3DA8|B Chain B, Crystal Structure Of Purn From Mycobacterium Tuberculosis
pdb|3DCJ|A Chain A, Crystal Structure Of Glycinamide Formyltransferase (Purn)
From Mycobacterium Tuberculosis In Complex With
5-Methyl-5, 6,7,8-Tetrahydrofolic Acid Derivative
pdb|3DCJ|B Chain B, Crystal Structure Of Glycinamide Formyltransferase (Purn)
From Mycobacterium Tuberculosis In Complex With
5-Methyl-5, 6,7,8-Tetrahydrofolic Acid Derivative
Length = 215
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Query: 161 FNMILSGKFL-RSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAG 219
F IL +FL R YG+ +N H LLP+F G A GVK+ GAT H V D G
Sbjct: 98 FMRILGPQFLSRFYGR-TLNTHPALLPAFPGTHGVADALAYGVKVTGATVHLVDAGTDTG 156
Query: 220 PIIEQMVERVSHRDNLRTFVQKSEDVEKQ 248
PI+ Q V D+ T ++ + E++
Sbjct: 157 PILAQQPVPVLDGDDEETLHERIKVTERR 185
>pdb|3TQQ|A Chain A, Structure Of The Methionyl-Trna Formyltransferase (Fmt)
From Coxiella Burnetii
Length = 314
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%)
Query: 161 FNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGP 220
+ +IL K L ++ +N+H LLP ++G P ++A AG + G + E LD G
Sbjct: 89 YGLILPKKALNAFRLGCVNVHASLLPRWRGAAPIQRAILAGDRETGISIXQXNEGLDTGD 148
Query: 221 IIEQMVERVSHRDN 234
++ + +S D
Sbjct: 149 VLAKSACVISSEDT 162
>pdb|1FMT|A Chain A, Methionyl-Trnafmet Formyltransferase From Escherichia Coli
pdb|1FMT|B Chain B, Methionyl-Trnafmet Formyltransferase From Escherichia Coli
pdb|2FMT|A Chain A, Methionyl-Trnafmet Formyltransferase Complexed With
Formyl- Methionyl-Trnafmet
pdb|2FMT|B Chain B, Methionyl-Trnafmet Formyltransferase Complexed With
Formyl- Methionyl-Trnafmet
Length = 314
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 49/112 (43%)
Query: 161 FNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGP 220
+ +IL L IN+H LLP ++G P +++ AG G T + LD G
Sbjct: 90 YGLILPKAVLEMPRLGCINVHGSLLPRWRGAAPIQRSLWAGDAETGVTIMQMDVGLDTGD 149
Query: 221 IIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVV 272
++ ++ ++ D T K ++ Q L +K + P ++T+V
Sbjct: 150 MLYKLSCPITAEDTSGTLYDKLAELGPQGLITTLKQLADGTAKPEVQDETLV 201
>pdb|3R8X|A Chain A, Crystal Structure Of Methionyl-Trna Formyltransferase From
Yersinia Pestis Complexed With L-Methionine
Length = 318
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 45/110 (40%)
Query: 161 FNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGP 220
+ +IL L IN+H LLP ++G P +++ AG + G T + LD G
Sbjct: 94 YGLILPAAVLAMPRLGCINVHGSLLPRWRGAAPIQRSVWAGDEKTGITIMQMDIGLDTGA 153
Query: 221 IIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKT 270
++ ++ + D T K + Q L ++ L N+T
Sbjct: 154 MLHKIECAIQPEDTSATLYDKLAQLGPQGLLITLQQLAAGTALAEVQNET 203
>pdb|1Z7E|A Chain A, Crystal Structure Of Full Length Arna
pdb|1Z7E|B Chain B, Crystal Structure Of Full Length Arna
pdb|1Z7E|C Chain C, Crystal Structure Of Full Length Arna
pdb|1Z7E|D Chain D, Crystal Structure Of Full Length Arna
pdb|1Z7E|E Chain E, Crystal Structure Of Full Length Arna
pdb|1Z7E|F Chain F, Crystal Structure Of Full Length Arna
Length = 660
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 34/78 (43%)
Query: 179 NIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTF 238
N+H LLP ++G P G G T H + + DAG I+ Q+ ++ D T
Sbjct: 102 NLHGSLLPKYRGRAPLNWVLVNGETETGVTLHRMVKRADAGAIVAQLRIAIAPDDIAITL 161
Query: 239 VQKSEDVEKQCLAKAIKS 256
K +Q L + + +
Sbjct: 162 HHKLCHAARQLLEQTLPA 179
>pdb|1YRW|A Chain A, Crystal Structure Of E.Coli Arna Transformylase Domain
Length = 302
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 34/78 (43%)
Query: 179 NIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTF 238
N+H LLP ++G P G G T H + + DAG I+ Q+ ++ D T
Sbjct: 102 NLHGSLLPKYRGRAPLNWVLVNGETETGVTLHRMVKRADAGAIVAQLRIAIAPDDIAITL 161
Query: 239 VQKSEDVEKQCLAKAIKS 256
K +Q L + + +
Sbjct: 162 HHKLCHAARQLLEQTLPA 179
>pdb|2BLN|A Chain A, N-Terminal Formyltransferase Domain Of Arna In Complex
With N-5-Formyltetrahydrofolate And Ump
pdb|2BLN|B Chain B, N-Terminal Formyltransferase Domain Of Arna In Complex
With N-5-Formyltetrahydrofolate And Ump
Length = 305
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 34/78 (43%)
Query: 179 NIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTF 238
N+H LLP ++G P G G T H + + DAG I+ Q+ ++ D T
Sbjct: 102 NLHGSLLPKYRGRAPLNWVLVNGETETGVTLHRMVKRADAGAIVAQLRIAIAPDDIAITL 161
Query: 239 VQKSEDVEKQCLAKAIKS 256
K +Q L + + +
Sbjct: 162 HHKLCHAARQLLEQTLPA 179
>pdb|3Q0I|A Chain A, Methionyl-Trna Formyltransferase From Vibrio Cholerae
Length = 318
Score = 30.8 bits (68), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 20/99 (20%), Positives = 41/99 (41%)
Query: 161 FNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGP 220
+ ++L L + IN+H +LP ++G P +++ AG G T LD G
Sbjct: 94 YGLLLPKVVLDTPKLGCINVHGSILPRWRGAAPIQRSIWAGDSETGVTIXQXDVGLDTGD 153
Query: 221 IIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCE 259
++ + D + K ++ Q L + ++ +
Sbjct: 154 XLKIATLPIEASDTSASXYDKLAELGPQALLECLQDIAQ 192
>pdb|1VEP|A Chain A, Crystal Structure Analysis Of Triple (T47mY164ET328N)
MALTOSE OF BACILLUS CEREUS BETA-Amylase At Ph 6.5
Length = 516
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 50/116 (43%), Gaps = 14/116 (12%)
Query: 165 LSGKFLRSYGKDVINIHHGLLPSFKG--GKPAKQAFDAGVKL-IGATSHFVTEELDAGPI 221
L +L YGKD + + G+L + G+ A AFD ++ IGA V + + P
Sbjct: 241 LMNGYLSMYGKDYLEWYQGILENHTKLIGELAHNAFDTTFQVPIGAKIAGVHWQYN-NPT 299
Query: 222 IEQMVERVSHRDN----LRTFVQKSEDVEKQCLAKAIK-SYCELRVLPYEMNKTVV 272
I E+ + ++ L F DV CL K SY E Y M KT+V
Sbjct: 300 IPHGAEKPAGYNDYSHLLDAFKSAKLDVNFTCLEMTDKGSYPE-----YSMPKTLV 350
>pdb|1QRI|A Chain A, X-Ray Structure Of The Dna-Eco Ri Endonuclease Complexes
With An E144d Mutation At 2.7 A
Length = 261
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 174 GKDVINIHHGLLPSFKGGK---PAKQAFDAGVKLIGATSHFVTEE 215
GKD+INI +GLL +G + A A D K I ++F+ E
Sbjct: 100 GKDIINIRNGLLVGKRGDQDLMAAGNAIDRSHKNISEIANFMLSE 144
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.140 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,372,104
Number of Sequences: 62578
Number of extensions: 269504
Number of successful extensions: 784
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 747
Number of HSP's gapped (non-prelim): 40
length of query: 273
length of database: 14,973,337
effective HSP length: 97
effective length of query: 176
effective length of database: 8,903,271
effective search space: 1566975696
effective search space used: 1566975696
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)