Query 024063
Match_columns 273
No_of_seqs 218 out of 1660
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 08:40:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024063.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024063hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02828 formyltetrahydrofolat 100.0 1.1E-59 2.4E-64 430.9 31.5 242 1-273 25-268 (268)
2 TIGR00655 PurU formyltetrahydr 100.0 5.3E-55 1.1E-59 403.0 30.1 234 1-273 41-280 (280)
3 PRK13010 purU formyltetrahydro 100.0 2.7E-53 5.8E-58 393.2 30.2 234 1-273 50-289 (289)
4 PRK13011 formyltetrahydrofolat 100.0 2E-52 4.4E-57 386.9 29.7 233 1-273 48-285 (286)
5 PRK06027 purU formyltetrahydro 100.0 3.4E-52 7.4E-57 385.4 29.6 234 1-273 47-285 (286)
6 COG0299 PurN Folate-dependent 100.0 1.6E-49 3.4E-54 346.1 22.9 192 47-272 1-198 (200)
7 COG0788 PurU Formyltetrahydrof 100.0 2.9E-48 6.3E-53 350.5 24.3 234 1-273 48-286 (287)
8 PLN02331 phosphoribosylglycina 100.0 2.6E-46 5.6E-51 331.8 25.3 191 48-272 1-202 (207)
9 TIGR00639 PurN phosphoribosylg 100.0 1.2E-45 2.6E-50 323.6 24.5 184 47-263 1-190 (190)
10 PRK05647 purN phosphoribosylgl 100.0 2.1E-45 4.6E-50 324.3 24.0 188 46-266 1-194 (200)
11 KOG3076 5'-phosphoribosylglyci 100.0 5.2E-45 1.1E-49 314.8 20.7 194 45-271 5-206 (206)
12 PLN02285 methionyl-tRNA formyl 100.0 2.3E-42 4.9E-47 326.0 22.5 189 43-261 3-202 (334)
13 COG0223 Fmt Methionyl-tRNA for 100.0 1.7E-41 3.8E-46 315.5 20.4 183 46-267 1-194 (307)
14 PF00551 Formyl_trans_N: Formy 100.0 8.4E-41 1.8E-45 289.6 19.1 175 47-254 1-181 (181)
15 PRK06988 putative formyltransf 100.0 1.8E-39 3.8E-44 303.7 22.0 182 46-266 2-191 (312)
16 PRK00005 fmt methionyl-tRNA fo 100.0 3.3E-39 7.2E-44 301.1 21.9 182 47-267 1-193 (309)
17 TIGR00460 fmt methionyl-tRNA f 100.0 4.8E-39 1E-43 300.8 22.0 181 47-266 1-192 (313)
18 PRK08125 bifunctional UDP-gluc 100.0 2.4E-36 5.2E-41 306.2 22.6 183 47-268 1-191 (660)
19 PRK07579 hypothetical protein; 100.0 5.9E-34 1.3E-38 257.9 19.3 172 46-265 1-175 (245)
20 KOG3082 Methionyl-tRNA formylt 99.9 6.8E-24 1.5E-28 195.1 8.3 173 47-260 7-190 (338)
21 KOG2452 Formyltetrahydrofolate 99.8 7.9E-21 1.7E-25 183.4 9.6 182 47-263 1-189 (881)
22 PF00185 OTCace: Aspartate/orn 96.2 0.016 3.5E-07 49.3 6.6 118 46-190 2-125 (158)
23 PLN02342 ornithine carbamoyltr 94.2 0.29 6.2E-06 47.2 9.2 119 46-191 194-313 (348)
24 PRK02255 putrescine carbamoylt 93.7 0.46 9.9E-06 45.6 9.5 119 46-191 154-278 (338)
25 PRK13814 pyrB aspartate carbam 92.5 0.68 1.5E-05 43.9 8.6 118 57-191 136-270 (310)
26 PRK01713 ornithine carbamoyltr 92.2 0.94 2E-05 43.3 9.2 121 46-191 156-281 (334)
27 PRK04284 ornithine carbamoyltr 92.0 1.1 2.5E-05 42.8 9.5 121 46-191 155-280 (332)
28 COG2102 Predicted ATPases of P 91.9 1.5 3.3E-05 39.8 9.6 79 47-128 1-92 (223)
29 PRK00779 ornithine carbamoyltr 91.3 1.2 2.6E-05 42.0 8.9 74 95-191 198-271 (304)
30 TIGR00670 asp_carb_tr aspartat 90.6 1.9 4.1E-05 40.7 9.3 117 46-191 150-267 (301)
31 TIGR00658 orni_carb_tr ornithi 90.4 2.4 5.2E-05 40.0 9.9 60 116-190 210-269 (304)
32 PRK03515 ornithine carbamoyltr 90.2 1.8 3.9E-05 41.5 9.0 121 46-191 156-281 (336)
33 PLN02527 aspartate carbamoyltr 89.7 2.8 6E-05 39.6 9.8 117 46-190 151-269 (306)
34 PRK08192 aspartate carbamoyltr 89.5 3.1 6.7E-05 39.9 10.0 118 46-190 159-279 (338)
35 TIGR01761 thiaz-red thiazoliny 89.2 0.79 1.7E-05 44.0 5.7 52 45-103 2-53 (343)
36 PRK02102 ornithine carbamoyltr 89.0 2.8 6.1E-05 40.1 9.3 116 46-187 155-275 (331)
37 cd04893 ACT_GcvR_1 ACT domains 88.5 0.7 1.5E-05 34.4 3.9 30 1-32 40-69 (77)
38 PRK14805 ornithine carbamoyltr 88.4 3.4 7.3E-05 39.0 9.3 117 46-191 147-267 (302)
39 PRK04523 N-acetylornithine car 88.0 5.4 0.00012 38.2 10.5 75 94-190 224-299 (335)
40 PRK11891 aspartate carbamoyltr 87.7 5.6 0.00012 39.5 10.7 116 46-188 241-358 (429)
41 TIGR00290 MJ0570_dom MJ0570-re 87.4 4.4 9.5E-05 36.7 9.1 77 47-127 1-90 (223)
42 TIGR00289 conserved hypothetic 87.1 5.9 0.00013 35.9 9.6 77 47-127 1-90 (222)
43 PF01902 ATP_bind_4: ATP-bindi 86.9 2.8 6.1E-05 37.8 7.5 77 47-127 1-90 (218)
44 PRK13376 pyrB bifunctional asp 86.9 4.7 0.0001 41.0 9.8 123 46-191 174-299 (525)
45 PF01408 GFO_IDH_MocA: Oxidore 86.8 1.3 2.8E-05 34.6 4.7 68 47-132 1-72 (120)
46 cd04875 ACT_F4HF-DF N-terminal 86.4 1.6 3.4E-05 31.8 4.7 31 1-31 40-70 (74)
47 PRK08300 acetaldehyde dehydrog 85.7 4.4 9.6E-05 38.4 8.4 72 45-130 3-78 (302)
48 TIGR03316 ygeW probable carbam 85.1 17 0.00037 35.2 12.3 131 46-191 170-320 (357)
49 cd04869 ACT_GcvR_2 ACT domains 84.1 2.2 4.9E-05 31.2 4.6 31 1-32 44-74 (81)
50 PRK10696 tRNA 2-thiocytidine b 83.9 9.9 0.00021 34.6 9.7 64 43-106 26-94 (258)
51 cd04872 ACT_1ZPV ACT domain pr 83.5 2.2 4.7E-05 32.2 4.4 32 1-32 40-71 (88)
52 TIGR03215 ac_ald_DH_ac acetald 83.3 8.6 0.00019 36.1 9.2 70 46-130 1-72 (285)
53 PRK12562 ornithine carbamoyltr 81.1 12 0.00026 35.9 9.4 76 93-190 204-280 (334)
54 cd01994 Alpha_ANH_like_IV This 81.0 6.7 0.00014 34.5 7.2 56 48-106 1-65 (194)
55 COG0673 MviM Predicted dehydro 79.9 7.8 0.00017 35.7 7.6 69 45-130 2-75 (342)
56 COG0394 Wzb Protein-tyrosine-p 79.4 3.8 8.1E-05 34.3 4.8 80 45-132 1-86 (139)
57 PRK05447 1-deoxy-D-xylulose 5- 79.2 27 0.00059 34.3 11.3 54 46-106 1-57 (385)
58 PRK14804 ornithine carbamoyltr 78.2 17 0.00036 34.5 9.3 65 116-191 212-276 (311)
59 COG0078 ArgF Ornithine carbamo 76.7 25 0.00055 33.5 9.9 119 45-190 152-275 (310)
60 PRK00856 pyrB aspartate carbam 76.2 13 0.00027 35.2 7.9 121 57-191 135-268 (305)
61 PRK07200 aspartate/ornithine c 75.6 34 0.00074 33.7 10.9 130 46-189 187-334 (395)
62 COG1921 SelA Selenocysteine sy 75.2 15 0.00032 36.3 8.2 80 48-130 134-221 (395)
63 COG4569 MhpF Acetaldehyde dehy 75.0 13 0.00029 33.8 7.3 52 45-103 3-56 (310)
64 PF03807 F420_oxidored: NADP o 74.6 15 0.00032 27.5 6.6 69 48-131 1-70 (96)
65 TIGR00237 xseA exodeoxyribonuc 73.7 78 0.0017 31.3 13.1 116 17-133 97-228 (432)
66 TIGR01921 DAP-DH diaminopimela 73.4 25 0.00054 33.7 9.2 65 46-130 3-68 (324)
67 PF02601 Exonuc_VII_L: Exonucl 72.4 34 0.00074 31.9 9.8 92 41-133 9-116 (319)
68 PRK00194 hypothetical protein; 72.3 7.7 0.00017 29.2 4.5 32 1-32 42-73 (90)
69 PF01171 ATP_bind_3: PP-loop f 71.9 17 0.00037 31.0 7.1 58 48-106 1-65 (182)
70 PLN02696 1-deoxy-D-xylulose-5- 71.8 17 0.00037 36.4 7.9 109 46-164 57-191 (454)
71 PF10686 DUF2493: Protein of u 71.1 9.2 0.0002 28.4 4.5 59 46-107 3-65 (71)
72 PRK00286 xseA exodeoxyribonucl 70.3 63 0.0014 31.7 11.5 115 18-133 104-233 (438)
73 PF00448 SRP54: SRP54-type pro 69.3 25 0.00054 30.8 7.7 83 48-133 3-94 (196)
74 PRK14664 tRNA-specific 2-thiou 67.3 22 0.00048 34.5 7.5 58 44-106 3-62 (362)
75 PRK13304 L-aspartate dehydroge 67.1 25 0.00055 32.1 7.6 68 46-130 1-69 (265)
76 PF10727 Rossmann-like: Rossma 67.0 5.7 0.00012 32.8 3.0 36 43-83 7-43 (127)
77 PRK10660 tilS tRNA(Ile)-lysidi 66.8 25 0.00053 34.8 7.9 62 45-106 14-82 (436)
78 TIGR03693 ocin_ThiF_like putat 66.6 27 0.00058 36.5 8.2 78 45-131 128-213 (637)
79 cd01992 PP-ATPase N-terminal d 66.1 50 0.0011 27.7 8.7 57 48-105 1-64 (185)
80 PRK07634 pyrroline-5-carboxyla 65.0 23 0.00049 31.3 6.7 69 46-130 4-74 (245)
81 COG1570 XseA Exonuclease VII, 64.5 78 0.0017 31.7 10.7 92 41-133 130-234 (440)
82 PRK07574 formate dehydrogenase 62.1 1.4E+02 0.0031 29.2 12.0 160 47-261 193-360 (385)
83 PF03054 tRNA_Me_trans: tRNA m 61.5 24 0.00051 34.3 6.5 55 47-106 1-69 (356)
84 PLN02928 oxidoreductase family 61.4 1E+02 0.0023 29.4 10.9 113 115-261 219-338 (347)
85 TIGR02432 lysidine_TilS_N tRNA 61.3 22 0.00048 30.1 5.7 58 48-106 1-65 (189)
86 COG0540 PyrB Aspartate carbamo 61.3 63 0.0014 31.0 9.0 56 119-190 221-277 (316)
87 COG2910 Putative NADH-flavin r 61.2 32 0.00069 30.9 6.7 33 47-84 1-35 (211)
88 PRK13302 putative L-aspartate 61.2 38 0.00083 31.2 7.6 69 46-130 6-75 (271)
89 PRK10126 tyrosine phosphatase; 59.7 27 0.00058 29.0 5.8 80 47-132 3-85 (147)
90 PRK13602 putative ribosomal pr 59.2 48 0.001 25.1 6.6 51 63-120 19-69 (82)
91 PRK15469 ghrA bifunctional gly 57.3 62 0.0013 30.5 8.4 114 115-262 183-301 (312)
92 PRK13600 putative ribosomal pr 56.3 21 0.00045 27.6 4.1 43 61-107 19-63 (84)
93 TIGR00243 Dxr 1-deoxy-D-xylulo 56.0 94 0.002 30.6 9.6 55 46-106 1-57 (389)
94 TIGR00512 salvage_mtnA S-methy 56.0 99 0.0021 29.7 9.6 71 48-128 147-231 (331)
95 PF01890 CbiG_C: Cobalamin syn 55.3 44 0.00096 27.1 6.2 55 52-106 6-65 (121)
96 PRK00726 murG undecaprenyldiph 54.5 48 0.001 30.7 7.2 80 46-132 1-101 (357)
97 TIGR03590 PseG pseudaminic aci 53.9 98 0.0021 28.3 9.0 80 48-133 1-91 (279)
98 TIGR02689 ars_reduc_gluta arse 53.7 26 0.00056 28.3 4.6 76 47-130 1-79 (126)
99 PRK14561 hypothetical protein; 53.7 31 0.00067 30.1 5.4 54 47-106 1-57 (194)
100 COG0482 TrmU Predicted tRNA(5- 53.2 50 0.0011 32.2 7.1 57 45-106 2-70 (356)
101 PRK14665 mnmA tRNA-specific 2- 52.5 73 0.0016 30.8 8.2 59 44-107 3-68 (360)
102 PRK06552 keto-hydroxyglutarate 52.5 64 0.0014 28.9 7.3 67 50-128 68-135 (213)
103 cd01993 Alpha_ANH_like_II This 52.4 66 0.0014 26.7 7.1 59 48-106 1-67 (185)
104 PRK03868 glucose-6-phosphate i 51.8 68 0.0015 31.6 8.0 61 44-108 109-175 (410)
105 PRK06487 glycerate dehydrogena 51.5 1.9E+02 0.0042 27.1 10.8 140 90-261 162-311 (317)
106 TIGR03679 arCOG00187 arCOG0018 51.2 1.2E+02 0.0025 27.1 8.8 53 51-107 2-64 (218)
107 PRK08306 dipicolinate synthase 50.7 83 0.0018 29.3 8.1 66 45-129 151-217 (296)
108 COG0111 SerA Phosphoglycerate 50.7 1.9E+02 0.0041 27.5 10.6 141 89-262 155-310 (324)
109 PRK06683 hypothetical protein; 50.3 68 0.0015 24.4 6.2 58 52-120 12-69 (82)
110 PRK13820 argininosuccinate syn 49.9 49 0.0011 32.5 6.6 58 46-107 2-64 (394)
111 PRK08335 translation initiatio 49.8 89 0.0019 29.2 8.0 69 51-128 113-183 (275)
112 PTZ00345 glycerol-3-phosphate 49.5 51 0.0011 32.0 6.6 21 45-65 10-31 (365)
113 PRK00143 mnmA tRNA-specific 2- 48.7 74 0.0016 30.4 7.6 55 47-106 1-70 (346)
114 cd05017 SIS_PGI_PMI_1 The memb 48.7 73 0.0016 25.1 6.5 55 46-108 43-99 (119)
115 PRK13581 D-3-phosphoglycerate 48.6 3E+02 0.0066 27.8 13.2 158 46-261 140-305 (526)
116 PLN03139 formate dehydrogenase 48.6 2.7E+02 0.0059 27.2 13.5 164 46-262 199-368 (386)
117 PRK06407 ornithine cyclodeamin 48.4 90 0.002 29.2 8.0 120 18-194 98-224 (301)
118 PLN02819 lysine-ketoglutarate 48.3 60 0.0013 36.0 7.6 77 45-130 568-656 (1042)
119 smart00226 LMWPc Low molecular 48.3 62 0.0013 26.1 6.1 66 61-132 16-81 (140)
120 KOG2741 Dimeric dihydrodiol de 47.7 56 0.0012 31.7 6.4 52 43-101 3-56 (351)
121 PRK08535 translation initiatio 46.9 1E+02 0.0022 29.1 8.0 69 51-128 124-194 (310)
122 PF01210 NAD_Gly3P_dh_N: NAD-d 46.3 12 0.00027 31.2 1.7 75 48-133 1-80 (157)
123 PF00205 TPP_enzyme_M: Thiamin 46.0 27 0.00059 28.1 3.6 44 89-132 29-87 (137)
124 COG1184 GCD2 Translation initi 45.8 1.4E+02 0.003 28.5 8.7 65 56-129 128-194 (301)
125 TIGR00420 trmU tRNA (5-methyla 45.1 52 0.0011 31.6 5.9 55 47-106 1-70 (352)
126 PF09419 PGP_phosphatase: Mito 44.7 77 0.0017 27.5 6.4 70 60-130 64-143 (168)
127 KOG0259 Tyrosine aminotransfer 44.7 45 0.00098 33.0 5.3 77 75-182 200-287 (447)
128 COG4693 PchG Oxidoreductase (N 44.3 41 0.00089 32.1 4.8 53 44-105 3-56 (361)
129 PRK11391 etp phosphotyrosine-p 44.0 90 0.0019 25.9 6.5 79 47-131 3-84 (144)
130 PF05368 NmrA: NmrA-like famil 44.0 68 0.0015 27.8 6.1 52 73-131 22-73 (233)
131 cd05212 NAD_bind_m-THF_DH_Cycl 43.9 1.9E+02 0.0041 24.1 9.3 39 88-130 41-79 (140)
132 TIGR01133 murG undecaprenyldip 43.8 84 0.0018 28.6 6.9 53 47-106 1-56 (348)
133 PRK13601 putative L7Ae-like ri 43.0 39 0.00084 25.8 3.8 58 52-120 9-66 (82)
134 KOG1466 Translation initiation 42.6 2.7E+02 0.0058 26.4 9.8 64 58-130 142-206 (313)
135 PRK08293 3-hydroxybutyryl-CoA 42.3 2.7E+02 0.0058 25.4 10.0 67 118-188 80-148 (287)
136 PRK01018 50S ribosomal protein 41.8 40 0.00087 26.4 3.8 58 52-121 17-76 (99)
137 TIGR02853 spore_dpaA dipicolin 41.3 2.2E+02 0.0049 26.4 9.4 66 46-130 151-217 (287)
138 PRK13243 glyoxylate reductase; 41.3 3.2E+02 0.0068 25.9 12.8 160 46-261 150-315 (333)
139 TIGR00511 ribulose_e2b2 ribose 41.0 1.9E+02 0.0041 27.2 8.9 69 51-128 119-189 (301)
140 COG0345 ProC Pyrroline-5-carbo 40.9 1.3E+02 0.0028 28.0 7.6 68 46-130 1-70 (266)
141 PRK10206 putative oxidoreducta 40.8 65 0.0014 30.5 5.8 66 46-130 1-72 (344)
142 cd04871 ACT_PSP_2 ACT domains 40.7 36 0.00079 25.7 3.3 29 3-31 48-76 (84)
143 PRK07027 cobalamin biosynthesi 40.6 86 0.0019 25.6 5.8 42 65-106 25-67 (126)
144 PF02423 OCD_Mu_crystall: Orni 40.5 52 0.0011 30.9 5.1 123 18-192 108-234 (313)
145 PRK06823 ornithine cyclodeamin 40.5 1.3E+02 0.0028 28.4 7.7 106 45-194 127-234 (315)
146 COG3967 DltE Short-chain dehyd 40.4 2E+02 0.0043 26.5 8.4 153 50-219 7-188 (245)
147 PRK13530 arsenate reductase; P 40.3 48 0.001 27.1 4.3 77 46-130 3-82 (133)
148 COG2243 CobF Precorrin-2 methy 40.3 3E+02 0.0064 25.3 10.0 104 14-133 65-177 (234)
149 PRK08410 2-hydroxyacid dehydro 40.2 3.2E+02 0.0069 25.6 12.0 113 91-233 160-284 (311)
150 COG0240 GpsA Glycerol-3-phosph 40.1 1.1E+02 0.0023 29.6 7.1 74 46-130 1-79 (329)
151 cd03174 DRE_TIM_metallolyase D 40.0 2.6E+02 0.0056 24.7 9.3 98 90-189 119-228 (265)
152 PRK00973 glucose-6-phosphate i 39.9 84 0.0018 31.4 6.6 61 44-108 130-198 (446)
153 PF10087 DUF2325: Uncharacteri 39.9 1.2E+02 0.0026 23.1 6.3 42 88-129 12-55 (97)
154 PF02670 DXP_reductoisom: 1-de 39.2 1.6E+02 0.0034 24.5 7.1 52 49-106 1-54 (129)
155 PRK07714 hypothetical protein; 39.1 1.2E+02 0.0027 23.5 6.2 57 52-121 19-77 (100)
156 TIGR03759 conj_TIGR03759 integ 38.9 2.9E+02 0.0063 24.8 9.1 58 45-106 108-166 (200)
157 TIGR02371 ala_DH_arch alanine 38.8 1.9E+02 0.0042 27.2 8.6 105 45-193 127-233 (325)
158 PF08660 Alg14: Oligosaccharid 38.5 1.8E+02 0.0039 24.9 7.7 86 50-137 2-107 (170)
159 PRK11880 pyrroline-5-carboxyla 38.3 1E+02 0.0023 27.5 6.5 110 46-184 2-119 (267)
160 COG2085 Predicted dinucleotide 38.3 1.3E+02 0.0029 27.2 7.0 66 46-129 1-67 (211)
161 PRK09536 btuD corrinoid ABC tr 37.7 2E+02 0.0042 28.3 8.7 55 74-132 291-348 (402)
162 PRK11579 putative oxidoreducta 37.6 1.7E+02 0.0036 27.5 8.0 36 45-82 3-38 (346)
163 PF08840 BAAT_C: BAAT / Acyl-C 37.3 55 0.0012 28.8 4.4 53 16-84 2-54 (213)
164 TIGR00524 eIF-2B_rel eIF-2B al 37.0 1.3E+02 0.0029 28.3 7.2 63 57-128 137-203 (303)
165 TIGR02992 ectoine_eutC ectoine 36.8 1.8E+02 0.0039 27.4 8.1 71 45-132 128-204 (326)
166 COG0313 Predicted methyltransf 36.4 1.8E+02 0.0039 27.4 7.8 74 52-133 55-139 (275)
167 COG1419 FlhF Flagellar GTP-bin 36.2 1.8E+02 0.004 28.8 8.2 80 46-133 203-292 (407)
168 PTZ00106 60S ribosomal protein 36.1 1.6E+02 0.0034 23.6 6.5 58 52-121 26-85 (108)
169 PRK07114 keto-hydroxyglutarate 36.0 1.6E+02 0.0034 26.7 7.2 66 50-127 71-137 (222)
170 KOG4435 Predicted lipid kinase 35.5 2E+02 0.0043 28.9 8.2 33 18-54 36-68 (535)
171 cd00115 LMWPc Substituted upda 35.5 55 0.0012 26.6 3.9 81 47-132 1-86 (141)
172 COG0037 MesJ tRNA(Ile)-lysidin 34.7 1.6E+02 0.0035 26.7 7.2 58 46-106 21-85 (298)
173 COG0120 RpiA Ribose 5-phosphat 34.6 84 0.0018 28.7 5.2 49 51-106 23-73 (227)
174 PF04007 DUF354: Protein of un 34.0 2.8E+02 0.006 26.6 8.9 77 47-130 1-91 (335)
175 PRK07589 ornithine cyclodeamin 33.6 3.6E+02 0.0079 25.9 9.7 107 45-194 128-237 (346)
176 TIGR03499 FlhF flagellar biosy 33.4 3.9E+02 0.0083 24.6 11.0 74 47-128 195-278 (282)
177 PRK13940 glutamyl-tRNA reducta 33.3 78 0.0017 31.2 5.2 67 46-130 181-250 (414)
178 PRK10017 colanic acid biosynth 33.1 1.5E+02 0.0033 29.2 7.2 38 47-85 1-44 (426)
179 PRK15409 bifunctional glyoxyla 33.0 4.3E+02 0.0093 25.0 11.7 115 116-262 194-313 (323)
180 cd05565 PTS_IIB_lactose PTS_II 33.0 88 0.0019 24.7 4.5 36 91-130 20-55 (99)
181 PRK12446 undecaprenyldiphospho 32.7 1.8E+02 0.0039 27.6 7.4 54 46-106 1-57 (352)
182 PRK12723 flagellar biosynthesi 32.0 5E+02 0.011 25.4 10.6 39 90-133 224-265 (388)
183 TIGR00268 conserved hypothetic 32.0 1.6E+02 0.0036 26.5 6.8 56 46-106 12-72 (252)
184 COG1748 LYS9 Saccharopine dehy 31.8 1.8E+02 0.0039 28.6 7.4 73 46-130 1-76 (389)
185 PLN02688 pyrroline-5-carboxyla 31.8 1.8E+02 0.0039 26.0 7.0 65 47-130 1-69 (266)
186 PF04273 DUF442: Putative phos 31.7 1.6E+02 0.0036 23.5 6.0 48 51-106 9-64 (110)
187 COG0107 HisF Imidazoleglycerol 31.7 31 0.00067 31.9 1.9 57 47-103 198-254 (256)
188 PF01451 LMWPc: Low molecular 31.6 99 0.0021 24.8 4.8 43 83-130 42-84 (138)
189 PRK04175 rpl7ae 50S ribosomal 31.2 2.3E+02 0.0049 23.1 6.8 58 52-121 31-90 (122)
190 TIGR00064 ftsY signal recognit 31.1 4.2E+02 0.0091 24.3 9.6 45 89-133 117-165 (272)
191 PF01113 DapB_N: Dihydrodipico 31.1 46 0.00099 26.8 2.7 34 47-84 1-36 (124)
192 TIGR01182 eda Entner-Doudoroff 31.1 1.9E+02 0.0041 25.8 6.8 66 50-127 60-126 (204)
193 PRK06372 translation initiatio 31.0 2.9E+02 0.0062 25.6 8.2 68 50-128 89-157 (253)
194 PRK05472 redox-sensing transcr 31.0 1.4E+02 0.0031 26.0 6.1 70 44-130 82-154 (213)
195 TIGR01327 PGDH D-3-phosphoglyc 30.9 5.8E+02 0.012 25.8 12.9 161 47-262 139-305 (525)
196 PF01248 Ribosomal_L7Ae: Ribos 30.8 66 0.0014 24.3 3.4 26 91-121 50-75 (95)
197 cd01988 Na_H_Antiporter_C The 30.7 2.4E+02 0.0052 21.4 9.3 42 91-132 61-104 (132)
198 PLN02306 hydroxypyruvate reduc 30.6 5.2E+02 0.011 25.2 11.0 116 115-263 229-349 (386)
199 PRK12439 NAD(P)H-dependent gly 30.4 1.2E+02 0.0026 28.7 5.8 22 44-65 5-27 (341)
200 cd01713 PAPS_reductase This do 30.4 1.8E+02 0.0039 23.2 6.2 58 48-107 1-63 (173)
201 PRK06015 keto-hydroxyglutarate 30.3 2E+02 0.0042 25.7 6.8 66 50-127 56-122 (201)
202 PRK10886 DnaA initiator-associ 30.3 2.7E+02 0.0059 24.5 7.7 55 74-131 110-165 (196)
203 cd05298 GH4_GlvA_pagL_like Gly 30.3 1.1E+02 0.0024 30.4 5.7 76 47-129 1-81 (437)
204 PRK07283 hypothetical protein; 30.0 1.9E+02 0.004 22.5 5.9 58 52-122 19-78 (98)
205 cd07364 PCA_45_Dioxygenase_B S 29.9 75 0.0016 29.5 4.2 36 185-220 91-127 (277)
206 cd05015 SIS_PGI_1 Phosphogluco 29.9 1.2E+02 0.0026 25.4 5.1 59 45-108 72-139 (158)
207 PF07085 DRTGG: DRTGG domain; 29.8 92 0.002 24.0 4.1 31 76-106 62-92 (105)
208 COG0743 Dxr 1-deoxy-D-xylulose 29.5 2.9E+02 0.0063 27.2 8.2 55 46-106 1-57 (385)
209 TIGR03590 PseG pseudaminic aci 29.5 3.1E+02 0.0066 25.0 8.2 78 46-130 170-249 (279)
210 PRK07066 3-hydroxybutyryl-CoA 29.4 2.1E+02 0.0045 27.2 7.2 121 116-265 77-214 (321)
211 PRK00536 speE spermidine synth 29.3 96 0.0021 28.7 4.8 43 44-98 71-113 (262)
212 COG3007 Uncharacterized paraqu 29.2 3.9E+02 0.0085 25.9 8.8 85 40-127 35-136 (398)
213 PRK13365 protocatechuate 4,5-d 28.9 82 0.0018 29.3 4.3 37 185-221 91-128 (279)
214 PRK11889 flhF flagellar biosyn 28.6 3E+02 0.0064 27.7 8.2 81 46-133 241-331 (436)
215 COG0528 PyrH Uridylate kinase 28.2 2.5E+02 0.0054 25.9 7.1 16 91-106 201-216 (238)
216 PRK08618 ornithine cyclodeamin 28.2 1.2E+02 0.0026 28.5 5.3 71 46-133 127-203 (325)
217 KOG2862 Alanine-glyoxylate ami 28.1 3.8E+02 0.0083 26.2 8.5 76 49-129 69-149 (385)
218 cd05197 GH4_glycoside_hydrolas 27.8 1.3E+02 0.0029 29.7 5.8 74 47-129 1-81 (425)
219 PHA00771 head assembly protein 27.8 89 0.0019 26.4 3.8 48 177-224 62-113 (151)
220 cd03522 MoeA_like MoeA_like. T 27.8 4.2E+02 0.0091 25.2 8.9 103 4-133 123-230 (312)
221 TIGR03677 rpl7ae 50S ribosomal 27.8 2.9E+02 0.0063 22.2 6.9 28 89-121 59-86 (117)
222 PF02254 TrkA_N: TrkA-N domain 27.7 2.7E+02 0.0059 21.1 7.4 65 54-130 4-70 (116)
223 cd06198 FNR_like_3 NAD(P) bind 27.7 3.3E+02 0.0072 23.2 7.8 61 46-106 95-159 (216)
224 PRK00048 dihydrodipicolinate r 27.5 1.6E+02 0.0034 26.8 5.8 45 89-133 74-119 (257)
225 PRK13289 bifunctional nitric o 27.5 4.4E+02 0.0095 25.0 9.2 59 46-104 261-324 (399)
226 PLN02256 arogenate dehydrogena 27.1 2.6E+02 0.0056 26.2 7.4 64 45-130 35-100 (304)
227 PF01081 Aldolase: KDPG and KH 27.1 1.8E+02 0.004 25.7 6.0 64 52-127 62-126 (196)
228 COG0552 FtsY Signal recognitio 27.0 5E+02 0.011 25.2 9.3 157 58-239 154-327 (340)
229 PRK08334 translation initiatio 26.9 2.8E+02 0.0062 27.0 7.7 63 56-128 177-244 (356)
230 TIGR03376 glycerol3P_DH glycer 26.6 1.9E+02 0.0042 27.7 6.5 18 48-65 1-19 (342)
231 PF02056 Glyco_hydro_4: Family 26.6 76 0.0017 27.9 3.5 74 48-129 1-80 (183)
232 cd01998 tRNA_Me_trans tRNA met 26.6 1.4E+02 0.0031 28.5 5.6 54 48-106 1-67 (349)
233 PRK15454 ethanol dehydrogenase 26.5 2.9E+02 0.0063 26.8 7.8 78 51-133 31-117 (395)
234 PRK07679 pyrroline-5-carboxyla 26.4 2.1E+02 0.0045 26.0 6.5 67 47-130 4-73 (279)
235 cd03129 GAT1_Peptidase_E_like 26.4 4E+02 0.0086 23.0 8.0 60 73-132 29-90 (210)
236 PRK14722 flhF flagellar biosyn 26.2 4.2E+02 0.009 25.9 8.8 82 47-133 138-226 (374)
237 PRK06141 ornithine cyclodeamin 25.9 1.3E+02 0.0029 28.1 5.2 72 45-133 124-200 (314)
238 cd08182 HEPD Hydroxyethylphosp 25.9 2.4E+02 0.0052 26.8 7.0 57 77-133 26-88 (367)
239 PRK12491 pyrroline-5-carboxyla 25.8 1.7E+02 0.0037 26.8 5.8 66 47-130 3-71 (272)
240 PRK04207 glyceraldehyde-3-phos 25.7 2.1E+02 0.0046 27.2 6.6 49 46-102 1-50 (341)
241 PRK05583 ribosomal protein L7A 25.6 3.2E+02 0.0068 21.6 6.6 59 52-123 18-78 (104)
242 COG2179 Predicted hydrolase of 25.5 2.6E+02 0.0056 24.6 6.4 64 59-130 50-117 (175)
243 PRK08291 ectoine utilization p 25.3 3.7E+02 0.0081 25.2 8.1 71 46-133 132-208 (330)
244 cd06392 PBP1_iGluR_delta_1 N-t 25.3 2.4E+02 0.0052 27.6 7.0 80 18-105 11-92 (400)
245 cd04870 ACT_PSP_1 CT domains f 25.2 1.5E+02 0.0033 21.3 4.4 30 1-31 38-67 (75)
246 PF02441 Flavoprotein: Flavopr 25.1 1.2E+02 0.0026 24.3 4.1 35 47-83 1-37 (129)
247 PTZ00222 60S ribosomal protein 25.0 2.8E+02 0.0061 26.0 6.9 73 47-132 128-205 (263)
248 cd06194 FNR_N-term_Iron_sulfur 25.0 4.4E+02 0.0095 22.5 8.9 59 46-104 97-160 (222)
249 COG0761 lytB 4-Hydroxy-3-methy 24.9 2.7E+02 0.0058 26.5 6.9 56 74-133 213-269 (294)
250 COG2121 Uncharacterized protei 24.9 2E+02 0.0044 26.0 5.8 45 58-106 105-153 (214)
251 PRK13978 ribose-5-phosphate is 24.8 1.7E+02 0.0037 26.7 5.5 47 52-106 25-75 (228)
252 cd05564 PTS_IIB_chitobiose_lic 24.8 1.4E+02 0.0031 23.0 4.3 36 91-130 19-54 (96)
253 cd01965 Nitrogenase_MoFe_beta_ 24.7 6.5E+02 0.014 24.4 10.0 81 45-133 298-382 (428)
254 PF01008 IF-2B: Initiation fac 24.6 1.7E+02 0.0037 26.5 5.6 75 45-130 107-184 (282)
255 cd08183 Fe-ADH2 Iron-containin 24.6 2.2E+02 0.0047 27.2 6.5 57 77-133 25-86 (374)
256 COG2401 ABC-type ATPase fused 24.5 1.1E+02 0.0024 31.1 4.4 38 90-133 549-586 (593)
257 PRK06932 glycerate dehydrogena 24.3 5.9E+02 0.013 23.8 11.3 89 116-234 191-288 (314)
258 PRK03562 glutathione-regulated 24.1 2.5E+02 0.0054 29.1 7.2 70 46-130 400-472 (621)
259 COG0075 Serine-pyruvate aminot 24.1 5.4E+02 0.012 25.3 9.1 68 49-121 57-127 (383)
260 COG0421 SpeE Spermidine syntha 24.0 2.6E+02 0.0057 26.1 6.7 136 47-219 78-227 (282)
261 PRK14721 flhF flagellar biosyn 23.9 4.9E+02 0.011 25.8 8.9 83 45-133 190-280 (420)
262 cd05293 LDH_1 A subgroup of L- 23.8 1.2E+02 0.0025 28.7 4.4 81 45-134 2-84 (312)
263 PRK03659 glutathione-regulated 23.8 2.1E+02 0.0045 29.5 6.5 70 46-130 400-472 (601)
264 TIGR03013 EpsB_2 sugar transfe 23.8 2.8E+02 0.006 27.2 7.2 37 45-83 123-160 (442)
265 PRK11790 D-3-phosphoglycerate 23.7 7E+02 0.015 24.4 10.3 140 89-261 164-319 (409)
266 PLN02712 arogenate dehydrogena 23.5 2.4E+02 0.0051 29.7 6.9 64 45-130 51-116 (667)
267 PRK05788 cobalamin biosynthesi 23.4 2.1E+02 0.0046 27.2 6.0 59 48-106 193-258 (315)
268 COG1052 LdhA Lactate dehydroge 23.3 6.5E+02 0.014 23.9 12.3 116 116-264 194-318 (324)
269 cd05213 NAD_bind_Glutamyl_tRNA 23.3 1.8E+02 0.0039 27.1 5.5 70 45-131 177-247 (311)
270 PRK02797 4-alpha-L-fucosyltran 23.3 2.9E+02 0.0064 26.6 6.9 84 47-133 145-237 (322)
271 PRK11914 diacylglycerol kinase 23.3 2.7E+02 0.0058 25.6 6.7 36 46-83 8-49 (306)
272 PF01262 AlaDh_PNT_C: Alanine 23.2 1.7E+02 0.0038 24.5 5.0 75 45-130 19-110 (168)
273 COG1454 EutG Alcohol dehydroge 23.1 5.1E+02 0.011 25.4 8.7 81 48-133 8-97 (377)
274 PRK05948 precorrin-2 methyltra 23.0 5E+02 0.011 23.5 8.2 78 47-132 93-180 (238)
275 cd00532 MGS-like MGS-like doma 23.0 2.1E+02 0.0045 22.4 5.1 16 89-104 89-104 (112)
276 cd01075 NAD_bind_Leu_Phe_Val_D 22.7 4E+02 0.0086 23.2 7.3 156 46-263 28-185 (200)
277 cd01997 GMP_synthase_C The C-t 22.6 3E+02 0.0064 25.9 6.8 56 48-107 1-62 (295)
278 COG0569 TrkA K+ transport syst 22.6 2.8E+02 0.006 24.7 6.4 70 47-130 1-74 (225)
279 PRK13789 phosphoribosylamine-- 22.4 1.4E+02 0.0031 29.3 4.8 13 45-57 3-15 (426)
280 TIGR01425 SRP54_euk signal rec 22.4 7.9E+02 0.017 24.5 10.8 86 46-133 100-193 (429)
281 TIGR03646 YtoQ_fam YtoQ family 22.3 3.9E+02 0.0085 22.7 6.7 108 51-184 3-113 (144)
282 PRK05703 flhF flagellar biosyn 22.2 3.6E+02 0.0078 26.6 7.6 39 90-133 269-310 (424)
283 cd01424 MGS_CPS_II Methylglyox 22.1 2.3E+02 0.005 21.9 5.1 38 63-104 59-100 (110)
284 COG0673 MviM Predicted dehydro 21.9 2.4E+02 0.0052 25.7 6.0 67 59-133 58-127 (342)
285 PRK07502 cyclohexadienyl dehyd 21.8 3.6E+02 0.0078 24.8 7.2 67 47-130 7-74 (307)
286 PRK07680 late competence prote 21.7 2.4E+02 0.0052 25.5 5.9 66 47-130 1-70 (273)
287 PLN02617 imidazole glycerol ph 21.6 2E+02 0.0042 29.6 5.7 57 47-103 481-537 (538)
288 COG3961 Pyruvate decarboxylase 21.5 1.8E+02 0.0038 30.0 5.2 44 89-132 227-286 (557)
289 PRK00045 hemA glutamyl-tRNA re 21.4 1.5E+02 0.0033 28.9 4.8 69 45-130 181-250 (423)
290 TIGR01284 alt_nitrog_alph nitr 21.4 8.1E+02 0.017 24.3 10.2 79 46-133 325-406 (457)
291 PRK05718 keto-hydroxyglutarate 21.4 4.4E+02 0.0096 23.5 7.4 67 50-128 67-134 (212)
292 PRK05720 mtnA methylthioribose 21.2 3.4E+02 0.0073 26.2 7.0 62 57-128 165-231 (344)
293 PRK00945 acetyl-CoA decarbonyl 21.0 3.5E+02 0.0076 23.5 6.5 60 89-153 53-134 (171)
294 PF02603 Hpr_kinase_N: HPr Ser 21.0 89 0.0019 25.4 2.6 55 47-106 49-112 (127)
295 COG1358 RPL8A Ribosomal protei 20.9 1.3E+02 0.0029 24.5 3.6 42 63-107 35-78 (116)
296 TIGR00853 pts-lac PTS system, 20.8 1.9E+02 0.0041 22.4 4.3 36 91-130 23-58 (95)
297 TIGR02855 spore_yabG sporulati 20.7 1.7E+02 0.0037 27.6 4.7 118 94-233 123-249 (283)
298 TIGR00872 gnd_rel 6-phosphoglu 20.7 3.1E+02 0.0067 25.2 6.5 64 47-129 1-66 (298)
299 PF00023 Ank: Ankyrin repeat H 20.6 75 0.0016 19.1 1.6 13 190-202 2-14 (33)
300 COG2403 Predicted GTPase [Gene 20.6 2.5E+02 0.0055 28.0 5.9 80 44-133 4-92 (449)
301 PRK00094 gpsA NAD(P)H-dependen 20.5 3.8E+02 0.0082 24.4 7.0 19 46-64 1-20 (325)
302 TIGR02356 adenyl_thiF thiazole 20.4 2.5E+02 0.0054 24.4 5.5 17 114-130 103-119 (202)
303 PF03446 NAD_binding_2: NAD bi 20.3 4E+02 0.0087 22.0 6.6 63 46-130 1-65 (163)
304 PRK08655 prephenate dehydrogen 20.2 3.2E+02 0.007 26.9 6.8 64 47-130 1-66 (437)
305 TIGR03609 S_layer_CsaB polysac 20.1 3.2E+02 0.0069 24.8 6.4 44 74-130 29-72 (298)
306 PRK12726 flagellar biosynthesi 20.1 8.7E+02 0.019 24.2 10.1 39 90-133 252-296 (407)
307 smart00851 MGS MGS-like domain 20.0 2.7E+02 0.0059 20.7 5.0 38 62-103 46-89 (90)
No 1
>PLN02828 formyltetrahydrofolate deformylase
Probab=100.00 E-value=1.1e-59 Score=430.94 Aligned_cols=242 Identities=80% Similarity=1.309 Sum_probs=226.0
Q ss_pred CeeEEEEEEcCCCCCChHhHHHHHHHHHHHhcccc-cccccCCCCCCceEEEEEECCchhHHHHHHhhhcCCCCceEEEE
Q 024063 1 MIKMCIEFIFDPIKWPREQMDEDFFKLSKMFNAMR-SVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCV 79 (273)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~l~~~f~~l~~~~~~~~-~~~r~~~~~~~~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~V 79 (273)
+||||++|+.+++.+++++|+++|.+++.+| .|. +.|+++..++++|||||+||+||||++|++++++|+++++|++|
T Consensus 25 ~ff~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~riavlvSg~g~nl~~ll~~~~~g~l~~eI~~V 103 (268)
T PLN02828 25 VFYSRSEFIFDPVKWPRAQMDEDFQEISKHF-KALKSVVRVPGLDPKYKIAVLASKQDHCLIDLLHRWQDGRLPVDITCV 103 (268)
T ss_pred eeEEEEEEEeCCCCCCHHHHHHHHHHHHHhc-CCcceEEEEccCCCCcEEEEEEcCCChhHHHHHHhhhcCCCCceEEEE
Confidence 5899999998877788999999999999999 563 37899888899999999999999999999999999999999999
Q ss_pred eeCCCCCCCcHHHHHHHHcCCCEEEEcCC-CCchHHHHHHHhcCCCEEEEEeecCCcchhhHhhhhhhhhhhhcccCccc
Q 024063 80 ISNHDRGPNSHVIRFLERHGIPYHYLCAK-ENEREEELLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLT 158 (273)
Q Consensus 80 vs~~~~~~~~~~~~~a~~~gIp~~~~~~~-~~~~~~~~~~~l~~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 158 (273)
+||++++++++++++|+++|||++.++.+ .+.+++++.+.++++|++|+||||+
T Consensus 104 iSn~~~~~~a~~~~~A~~~gIP~~~~~~~~~~~~e~~~~~~l~~~DliVLAgym~------------------------- 158 (268)
T PLN02828 104 ISNHERGPNTHVMRFLERHGIPYHYLPTTKENKREDEILELVKGTDFLVLARYMQ------------------------- 158 (268)
T ss_pred EeCCCCCCCchHHHHHHHcCCCEEEeCCCCCCCHHHHHHHHHhcCCEEEEeeehH-------------------------
Confidence 99998777789999999999999988743 3345667778777999999999999
Q ss_pred ccccccCChhHHhhcCCCeeEeecCCCCCCCCChHHHHHHHhCCCEeEEEEEEecCccCCCCeeEEEEEecCCCCCHHHH
Q 024063 159 SYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTF 238 (273)
Q Consensus 159 ~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~p~~~ai~~G~~~~GvT~H~~~~~~D~G~Ii~Q~~~~I~~~dt~~~L 238 (273)
|||+++++.|++++||+||||||+|||++|++||+.+|++.+|+|+|+|++++|+||||.|+.++|.++||.++|
T Consensus 159 -----IL~~~~l~~~~~riINIHpSlLP~f~Ga~p~~~Ai~~Gvk~tG~TvH~V~~~lD~GpII~Q~~v~V~~~dt~~~L 233 (268)
T PLN02828 159 -----ILSGNFLKGYGKDIINIHHGLLPSFKGGNPSKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRSF 233 (268)
T ss_pred -----hCCHHHHhhccCCEEEecCccCCCCCCCcHHHHHHHcCCCeEEEEEEEEcCCCCCCCeeEEEEEecCCCCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCceeecCCceeeC
Q 024063 239 VQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVVF 273 (273)
Q Consensus 239 ~~rl~~~~~~ll~~~i~~l~~g~~~~~~~~k~~vf 273 (273)
.+|+.+.|+++++++++.+.++++..+..||||||
T Consensus 234 ~~r~~~~E~~~l~~av~~~~~~~~~~~~~~~tvvf 268 (268)
T PLN02828 234 VQKSENLEKQCLAKAIKSYCELRVLPYGTNKTVVF 268 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCeEEcCCCcEEeC
Confidence 99999999999999999999999999844999998
No 2
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=100.00 E-value=5.3e-55 Score=403.04 Aligned_cols=234 Identities=46% Similarity=0.769 Sum_probs=214.2
Q ss_pred CeeEEEEEEcCCCCCChHhHHHHHHH-HHHHhcccccccccCCCCCCceEEEEEECCchhHHHHHHhhhcCCCCceEEEE
Q 024063 1 MIKMCIEFIFDPIKWPREQMDEDFFK-LSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCV 79 (273)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~l~~~f~~-l~~~~~~~~~~~r~~~~~~~~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~V 79 (273)
+|+||++|+.++...+.+.|+++|.+ ++.++ .|. +++...++++|||||+||+||||++|++++++|.++++|++|
T Consensus 41 ~F~mr~~v~~~~~~~~~~~l~~~l~~~~~~~~-~l~--i~l~~~~~~~ki~vl~Sg~g~nl~~l~~~~~~g~l~~~i~~v 117 (280)
T TIGR00655 41 RFFMRVEFQLEGFRLEESSLLAAFKSALAEKF-EMT--WELILADKLKRVAILVSKEDHCLGDLLWRWYSGELDAEIALV 117 (280)
T ss_pred eEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHh-CCE--EEEecCCCCcEEEEEEcCCChhHHHHHHHHHcCCCCcEEEEE
Confidence 58999999998767899999999999 99998 444 567677788999999999999999999999999999999999
Q ss_pred eeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCc---hHHHHHHHhc--CCCEEEEEeecCCcchhhHhhhhhhhhhhhccc
Q 024063 80 ISNHDRGPNSHVIRFLERHGIPYHYLCAKENE---REEELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSK 154 (273)
Q Consensus 80 vs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~---~~~~~~~~l~--~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~ 154 (273)
+||+++ +..+|+++|||++.++.+... .++++.++++ ++|++|++|||+
T Consensus 118 isn~~~-----~~~~A~~~gIp~~~~~~~~~~~~~~e~~~~~~l~~~~~Dlivlagym~--------------------- 171 (280)
T TIGR00655 118 ISNHED-----LRSLVERFGIPFHYIPATKDNRVEHEKRQLELLKQYQVDLVVLAKYMQ--------------------- 171 (280)
T ss_pred EEcChh-----HHHHHHHhCCCEEEcCCCCcchhhhHHHHHHHHHHhCCCEEEEeCchh---------------------
Confidence 999843 345799999999987753222 2456788776 899999999999
Q ss_pred CcccccccccCChhHHhhcCCCeeEeecCCCCCCCCChHHHHHHHhCCCEeEEEEEEecCccCCCCeeEEEEEecCCCCC
Q 024063 155 GSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDN 234 (273)
Q Consensus 155 ~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~p~~~ai~~G~~~~GvT~H~~~~~~D~G~Ii~Q~~~~I~~~dt 234 (273)
++|+++++.|++++||+||||||+|||++|++||+.+|++.+|+|+|+|++++|+||||.|++++|.++||
T Consensus 172 ---------il~~~~l~~~~~~iINiHpSLLP~f~G~~p~~~ai~~G~k~tG~TvH~V~e~lD~GpII~Q~~v~I~~~dt 242 (280)
T TIGR00655 172 ---------ILSPDFVKRYPNKIINIHHSFLPAFIGANPYQRAYERGVKIIGATAHYVTEELDEGPIIEQDVVRVDHTDN 242 (280)
T ss_pred ---------hCCHHHHhhccCCEEEecCCcCCCCCCcCHHHHHHHcCCCeEEEEEEEEcCCCcCCCeEEEEEEEcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCceeecCCceeeC
Q 024063 235 LRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVVF 273 (273)
Q Consensus 235 ~~~L~~rl~~~~~~ll~~~i~~l~~g~~~~~~~~k~~vf 273 (273)
.++|.+|+.++|+++++++++.++++++.... +|||||
T Consensus 243 ~~~L~~ri~~~E~~~~~~ai~~~~~~~~~~~~-~~~~vf 280 (280)
T TIGR00655 243 VEDLIRAGRDIEKVVLARAVKLHLEDRVFVYE-NKTVVF 280 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCeEEcC-CeeEEC
Confidence 99999999999999999999999999999875 999998
No 3
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=100.00 E-value=2.7e-53 Score=393.19 Aligned_cols=234 Identities=41% Similarity=0.676 Sum_probs=211.2
Q ss_pred CeeEEEEEEcC-CCCCChHhHHHHHHHHHHHhcccccccccCCCCCCceEEEEEECCchhHHHHHHhhhcCCCCceEEEE
Q 024063 1 MIKMCIEFIFD-PIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCV 79 (273)
Q Consensus 1 ~~~~~~~~~~~-~~~~~~~~l~~~f~~l~~~~~~~~~~~r~~~~~~~~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~V 79 (273)
.||||+++... +...+.++|+++|.+++++++ |.+ ++...+.++|||||+||+||||++|++++++|.++++|++|
T Consensus 50 ~ffm~i~~~~~~~~~~~~~~l~~~l~~l~~~l~-l~~--~i~~~~~~~kiavl~Sg~g~nl~al~~~~~~~~l~~~i~~v 126 (289)
T PRK13010 50 RFFMRVSFHAQSAEAASVDTFRQEFQPVAEKFD-MQW--AIHPDGQRPKVVIMVSKFDHCLNDLLYRWRMGELDMDIVGI 126 (289)
T ss_pred cEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHhC-CeE--EEecCCCCeEEEEEEeCCCccHHHHHHHHHCCCCCcEEEEE
Confidence 47999998833 236789999999999999994 443 45456677899999999999999999999999999999999
Q ss_pred eeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCc---hHHHHHHHhc--CCCEEEEEeecCCcchhhHhhhhhhhhhhhccc
Q 024063 80 ISNHDRGPNSHVIRFLERHGIPYHYLCAKENE---REEELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSK 154 (273)
Q Consensus 80 vs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~---~~~~~~~~l~--~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~ 154 (273)
+||++ .+.++|+++|||+++++.+... .++++.+.++ ++|++|++|||+
T Consensus 127 isn~~-----~~~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~l~~~~~Dlivlagym~--------------------- 180 (289)
T PRK13010 127 ISNHP-----DLQPLAVQHDIPFHHLPVTPDTKAQQEAQILDLIETSGAELVVLARYMQ--------------------- 180 (289)
T ss_pred EECCh-----hHHHHHHHcCCCEEEeCCCcccccchHHHHHHHHHHhCCCEEEEehhhh---------------------
Confidence 99984 2479999999999988744222 2456788886 899999999999
Q ss_pred CcccccccccCChhHHhhcCCCeeEeecCCCCCCCCChHHHHHHHhCCCEeEEEEEEecCccCCCCeeEEEEEecCCCCC
Q 024063 155 GSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDN 234 (273)
Q Consensus 155 ~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~p~~~ai~~G~~~~GvT~H~~~~~~D~G~Ii~Q~~~~I~~~dt 234 (273)
+|++++++.|++++||+||||||+|||.+|++||+.+|++.+|+|+|+|++++|+||||.|+.++|.++||
T Consensus 181 ---------il~~~~l~~~~~~iiNiHpSlLP~f~G~~~~~~ai~~G~k~tG~TvH~v~~~lD~GpII~Q~~v~V~~~dt 251 (289)
T PRK13010 181 ---------VLSDDLSRKLSGRAINIHHSFLPGFKGARPYHQAHARGVKLIGATAHFVTDDLDEGPIIEQDVERVDHSYS 251 (289)
T ss_pred ---------hCCHHHHhhccCCceeeCcccCCCCCCCCHHHHHHHcCCCeEEEEEEEEcCCCCCCCceEEEEEEcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCceeecCCceeeC
Q 024063 235 LRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVVF 273 (273)
Q Consensus 235 ~~~L~~rl~~~~~~ll~~~i~~l~~g~~~~~~~~k~~vf 273 (273)
.++|.+|+.++++++++++++.+++|++...+ +|||||
T Consensus 252 ~e~L~~r~~~~E~~~l~~ai~~~~~~~~~~~~-~~~~vf 289 (289)
T PRK13010 252 PEDLVAKGRDVECLTLARAVKAFIEHRVFING-DRTVVF 289 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCEEEeC-CEEEEC
Confidence 99999999999999999999999999998875 999998
No 4
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=100.00 E-value=2e-52 Score=386.90 Aligned_cols=233 Identities=42% Similarity=0.693 Sum_probs=209.2
Q ss_pred CeeEEEEEEcCCCCCChHhHHHHHHHHHHHhcccccccccCCCCCCceEEEEEECCchhHHHHHHhhhcCCCCceEEEEe
Q 024063 1 MIKMCIEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVI 80 (273)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~l~~~f~~l~~~~~~~~~~~r~~~~~~~~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vv 80 (273)
+|+|++++++|. ..+.++|+++|..++.+++. .+ .+...++++|||||+||+|+||++|++++++|.++++|++|+
T Consensus 48 ~F~m~~~~~~p~-~~~~~~L~~~L~~l~~~l~l-~i--~i~~~~~~~ri~vl~Sg~g~nl~al~~~~~~~~~~~~i~~vi 123 (286)
T PRK13011 48 RFFMRVEFHSEE-GLDEDALRAGFAPIAARFGM-QW--ELHDPAARPKVLIMVSKFDHCLNDLLYRWRIGELPMDIVGVV 123 (286)
T ss_pred eEEEEEEEecCC-CCCHHHHHHHHHHHHHHhCc-EE--EEeecccCceEEEEEcCCcccHHHHHHHHHcCCCCcEEEEEE
Confidence 589999999765 57899999999999998843 33 344455778999999999999999999999999999999999
Q ss_pred eCCCCCCCcHHHHHHHHcCCCEEEEcCCCCc---hHHHHHHHhc--CCCEEEEEeecCCcchhhHhhhhhhhhhhhcccC
Q 024063 81 SNHDRGPNSHVIRFLERHGIPYHYLCAKENE---REEELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKG 155 (273)
Q Consensus 81 s~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~---~~~~~~~~l~--~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~ 155 (273)
||+++ +..+|+++|||++.++.+... .++++.+.++ ++|++|++|||+
T Consensus 124 sn~~~-----~~~lA~~~gIp~~~~~~~~~~~~~~~~~~~~~l~~~~~Dlivlagy~~---------------------- 176 (286)
T PRK13011 124 SNHPD-----LEPLAAWHGIPFHHFPITPDTKPQQEAQVLDVVEESGAELVVLARYMQ---------------------- 176 (286)
T ss_pred ECCcc-----HHHHHHHhCCCEEEeCCCcCchhhhHHHHHHHHHHhCcCEEEEeChhh----------------------
Confidence 99842 566699999999987643222 2346777776 899999999999
Q ss_pred cccccccccCChhHHhhcCCCeeEeecCCCCCCCCChHHHHHHHhCCCEeEEEEEEecCccCCCCeeEEEEEecCCCCCH
Q 024063 156 SLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNL 235 (273)
Q Consensus 156 ~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~p~~~ai~~G~~~~GvT~H~~~~~~D~G~Ii~Q~~~~I~~~dt~ 235 (273)
+|++++++.|++++||+||||||+|||.+|++||+.+|++++|+|+|+|++++|+||||+|+.++|.++||.
T Consensus 177 --------il~~~~l~~~~~~iiNiHpSLLP~~rG~~~~~~ai~~G~~~tG~TvH~v~~~~D~G~Ii~Q~~v~I~~~dt~ 248 (286)
T PRK13011 177 --------VLSPELCRKLAGRAINIHHSFLPGFKGAKPYHQAYERGVKLIGATAHYVTDDLDEGPIIEQDVERVDHAYSP 248 (286)
T ss_pred --------hCCHHHHhhccCCeEEeccccCCCCCCCcHHHHHHHCCCCeEEEEEEEEcCCCcCCCcEEEEEEEcCCCCCH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCceeecCCceeeC
Q 024063 236 RTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVVF 273 (273)
Q Consensus 236 ~~L~~rl~~~~~~ll~~~i~~l~~g~~~~~~~~k~~vf 273 (273)
++|.+|++++|+++++++++.++++++...+ +||+||
T Consensus 249 ~~L~~r~~~~E~~~~~~ai~~~~~~~~~~~~-~~~~~~ 285 (286)
T PRK13011 249 EDLVAKGRDVECLTLARAVKAHIERRVFLNG-NRTVVF 285 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCeEEcC-CEEEeC
Confidence 9999999999999999999999999998775 999998
No 5
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=100.00 E-value=3.4e-52 Score=385.39 Aligned_cols=234 Identities=50% Similarity=0.791 Sum_probs=211.1
Q ss_pred CeeEEEEEEcCCCCCChHhHHHHHHHHHHHhcccccccccCCCCCCceEEEEEECCchhHHHHHHhhhcCCCCceEEEEe
Q 024063 1 MIKMCIEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVI 80 (273)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~l~~~f~~l~~~~~~~~~~~r~~~~~~~~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vv 80 (273)
+|.|++++++++...+.+.|+++|.+++.+++.. ..+....+++|||||+||+|+||++|+++++.|.++++|++|+
T Consensus 47 ~F~m~i~v~~~~~~~~~~~L~~~L~~l~~~l~l~---i~l~~~~~~~ri~vl~Sg~gsnl~al~~~~~~~~~~~~i~~vi 123 (286)
T PRK06027 47 RFFMRVEFEGDGLIFNLETLRADFAALAEEFEMD---WRLLDSAERKRVVILVSKEDHCLGDLLWRWRSGELPVEIAAVI 123 (286)
T ss_pred eEEEEEEEEeCCCCCCHHHHHHHHHHHHHHhCCE---EEEcccccCcEEEEEEcCCCCCHHHHHHHHHcCCCCcEEEEEE
Confidence 4789999999666677999999999999988532 3455566889999999999999999999999999999999999
Q ss_pred eCCCCCCCcHHHHHHHHcCCCEEEEcCCCC---chHHHHHHHhc--CCCEEEEEeecCCcchhhHhhhhhhhhhhhcccC
Q 024063 81 SNHDRGPNSHVIRFLERHGIPYHYLCAKEN---EREEELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKG 155 (273)
Q Consensus 81 s~~~~~~~~~~~~~a~~~gIp~~~~~~~~~---~~~~~~~~~l~--~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~ 155 (273)
||++ .+..+|+++|||++.++.+.. ..+.++.+.++ ++|++|++|||+
T Consensus 124 sn~~-----~~~~lA~~~gIp~~~~~~~~~~~~~~~~~~~~~l~~~~~Dlivlagy~~---------------------- 176 (286)
T PRK06027 124 SNHD-----DLRSLVERFGIPFHHVPVTKETKAEAEARLLELIDEYQPDLVVLARYMQ---------------------- 176 (286)
T ss_pred EcCh-----hHHHHHHHhCCCEEEeccCccccchhHHHHHHHHHHhCCCEEEEecchh----------------------
Confidence 9984 345679999999998774421 22456778776 899999999999
Q ss_pred cccccccccCChhHHhhcCCCeeEeecCCCCCCCCChHHHHHHHhCCCEeEEEEEEecCccCCCCeeEEEEEecCCCCCH
Q 024063 156 SLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNL 235 (273)
Q Consensus 156 ~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~p~~~ai~~G~~~~GvT~H~~~~~~D~G~Ii~Q~~~~I~~~dt~ 235 (273)
+||+++++.|++++||+||||||+|||.+|++||+.+|++++|+|+|+|++++|+||||.|+.++|.++||.
T Consensus 177 --------il~~~~l~~~~~~iiNiHpSLLP~yrG~~~~~~ai~~G~~~tG~TiH~v~~~~D~G~Ii~Q~~v~i~~~dt~ 248 (286)
T PRK06027 177 --------ILSPDFVARFPGRIINIHHSFLPAFKGAKPYHQAYERGVKLIGATAHYVTADLDEGPIIEQDVIRVDHRDTA 248 (286)
T ss_pred --------hcCHHHHhhccCCceecCcccCCCCCCCCHHHHHHHCCCCeEEEEEEEEcCCCcCCCcEEEEEEEcCCCCCH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCceeecCCceeeC
Q 024063 236 RTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVVF 273 (273)
Q Consensus 236 ~~L~~rl~~~~~~ll~~~i~~l~~g~~~~~~~~k~~vf 273 (273)
++|.+|+.++|+++++++++.++++++...+ ++++||
T Consensus 249 ~~L~~ri~~~E~~~~~~ai~~~~~~~~~~~~-~~~~~~ 285 (286)
T PRK06027 249 EDLVRAGRDVEKQVLARAVRWHLEDRVLVYG-NKTVVF 285 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCEEEcC-CEEEEc
Confidence 9999999999999999999999999998865 888887
No 6
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.6e-49 Score=346.08 Aligned_cols=192 Identities=36% Similarity=0.511 Sum_probs=179.7
Q ss_pred ceEEEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCC-ch---HHHHHHHhc-
Q 024063 47 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKEN-ER---EEELLELVQ- 121 (273)
Q Consensus 47 ~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~-~~---~~~~~~~l~- 121 (273)
+||+||+||+||||++|+++++.|.++++|++|+||+ ++++++++|+++|||++.++++.. .| +.++.+.++
T Consensus 1 ~ki~VlaSG~GSNlqaiida~~~~~~~a~i~~Visd~---~~A~~lerA~~~gIpt~~~~~k~~~~r~~~d~~l~~~l~~ 77 (200)
T COG0299 1 KKIAVLASGNGSNLQAIIDAIKGGKLDAEIVAVISDK---ADAYALERAAKAGIPTVVLDRKEFPSREAFDRALVEALDE 77 (200)
T ss_pred CeEEEEEeCCcccHHHHHHHHhcCCCCcEEEEEEeCC---CCCHHHHHHHHcCCCEEEeccccCCCHHHHHHHHHHHHHh
Confidence 5899999999999999999999999999999999998 578999999999999998886642 22 457777776
Q ss_pred -CCCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCCCCCCCCChHHHHHHHh
Q 024063 122 -NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDA 200 (273)
Q Consensus 122 -~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~p~~~ai~~ 200 (273)
++|+||+||||+ ||++.|++.|+++++|+||||||+|+|.+.+..|+.+
T Consensus 78 ~~~dlvvLAGyMr------------------------------IL~~~fl~~~~grIlNIHPSLLP~f~G~h~~~~A~~a 127 (200)
T COG0299 78 YGPDLVVLAGYMR------------------------------ILGPEFLSRFEGRILNIHPSLLPAFPGLHAHEQALEA 127 (200)
T ss_pred cCCCEEEEcchHH------------------------------HcCHHHHHHhhcceEecCcccccCCCCchHHHHHHHc
Confidence 899999999999 9999999999999999999999999999999999999
Q ss_pred CCCEeEEEEEEecCccCCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCceeecCCceee
Q 024063 201 GVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVV 272 (273)
Q Consensus 201 G~~~~GvT~H~~~~~~D~G~Ii~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~i~~l~~g~~~~~~~~k~~v 272 (273)
|++.+|||+|++++++|+||||.|..+||.++||.++|.+|+.+.|+++++++++.+.+|+.+..+ |++++
T Consensus 128 G~k~sG~TVH~V~e~vD~GpII~Q~~Vpv~~~Dt~etl~~RV~~~Eh~lyp~~v~~~~~g~~~~~~-~~~~~ 198 (200)
T COG0299 128 GVKVSGCTVHFVTEGVDTGPIIAQAAVPVLPGDTAETLEARVLEQEHRLYPLAVKLLAEGRLKIEG-GRVIL 198 (200)
T ss_pred CCCccCcEEEEEccCCCCCCeEEEEeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCcceecC-ceEEe
Confidence 999999999999999999999999999999999999999999999999999999999999999965 77654
No 7
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=100.00 E-value=2.9e-48 Score=350.49 Aligned_cols=234 Identities=48% Similarity=0.754 Sum_probs=218.3
Q ss_pred CeeEEEEEEcCCCCCChHhHHHHHHHHHHHhcccccccccCCCCCCceEEEEEECCchhHHHHHHhhhcCCCCceEEEEe
Q 024063 1 MIKMCIEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVI 80 (273)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~l~~~f~~l~~~~~~~~~~~r~~~~~~~~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vv 80 (273)
.||||++|..++...++++|+++|+.++++| .|. |+....+.++||++|+|+.++||.+||..|..|+|+++|++||
T Consensus 48 ~FFmR~~f~~~~~~~~~~~l~~~f~~~a~~f-~m~--~~~~~~~~~~ri~i~VSK~~HCL~DLL~r~~~g~L~~eI~~VI 124 (287)
T COG0788 48 RFFMRVEFEGEGGPLDREALRAAFAPLAEEF-GMD--WRLHDAAQRKRIAILVSKEDHCLGDLLYRWRIGELPAEIVAVI 124 (287)
T ss_pred eEEEEEEEecCCCcccHHHHHHHHHHHHHhh-Cce--eEEeccccCceEEEEEechHHHHHHHHHHHhcCCcCCceEEEE
Confidence 4899999999998899999999999999999 565 5777788899999999999999999999999999999999999
Q ss_pred eCCCCCCCcHHHHHHHHcCCCEEEEc-CCCC--chHHHHHHHhc--CCCEEEEEeecCCcchhhHhhhhhhhhhhhcccC
Q 024063 81 SNHDRGPNSHVIRFLERHGIPYHYLC-AKEN--EREEELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKG 155 (273)
Q Consensus 81 s~~~~~~~~~~~~~a~~~gIp~~~~~-~~~~--~~~~~~~~~l~--~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~ 155 (273)
||+++ +...++++|||++.++ .+++ ..++++.++++ ++|+||+|.|||
T Consensus 125 sNH~d-----l~~~v~~~~IPfhhip~~~~~k~e~E~~~~~ll~~~~~DlvVLARYMq---------------------- 177 (287)
T COG0788 125 SNHDD-----LRPLVERFDIPFHHIPVTKENKAEAEARLLELLEEYGADLVVLARYMQ---------------------- 177 (287)
T ss_pred cCCHH-----HHHHHHHcCCCeeeccCCCCcchHHHHHHHHHHHHhCCCEEeehhhHh----------------------
Confidence 99963 6899999999999998 3443 22456777776 799999999999
Q ss_pred cccccccccCChhHHhhcCCCeeEeecCCCCCCCCChHHHHHHHhCCCEeEEEEEEecCccCCCCeeEEEEEecCCCCCH
Q 024063 156 SLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNL 235 (273)
Q Consensus 156 ~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~p~~~ai~~G~~~~GvT~H~~~~~~D~G~Ii~Q~~~~I~~~dt~ 235 (273)
||++++++.+.+++||||+|+||+|.|+.|+++|..+|.+..|+|.||+++++|.||||.|..++|+..+|.
T Consensus 178 --------ILS~d~~~~~~g~iINIHHSFLPaF~GA~PY~QA~eRGVKlIGATAHYVT~dLDeGPIIeQdv~rV~H~~s~ 249 (287)
T COG0788 178 --------ILSPDFVERFPGKIINIHHSFLPAFIGANPYHQAYERGVKLIGATAHYVTADLDEGPIIEQDVIRVDHAYSV 249 (287)
T ss_pred --------hCCHHHHHhccCcEEEecccccccCCCCChHHHHHhcCCeEeeeeeeeccCCCCCCCceeeeeeecCccCCH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCceeecCCceeeC
Q 024063 236 RTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVVF 273 (273)
Q Consensus 236 ~~L~~rl~~~~~~ll~~~i~~l~~g~~~~~~~~k~~vf 273 (273)
+++..+-++.|...|.++++...++++..+. ||||||
T Consensus 250 ed~~~~GrDvE~~VLARAv~~hle~Rv~v~g-nkTVVf 286 (287)
T COG0788 250 EDLVRAGRDVEKLVLARAVKAHLEDRVFVNG-NKTVVF 286 (287)
T ss_pred HHHHHhCCcHHHHHHHHHHHHHhcceEEEeC-CeEEec
Confidence 9999999999999999999999999999997 999998
No 8
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=100.00 E-value=2.6e-46 Score=331.82 Aligned_cols=191 Identities=26% Similarity=0.458 Sum_probs=174.4
Q ss_pred eEEEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCC----CchHHHHHHHhc--
Q 024063 48 KVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE----NEREEELLELVQ-- 121 (273)
Q Consensus 48 kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~----~~~~~~~~~~l~-- 121 (273)
||+||+||+||||++|++++++|.++++|++||||+ +.+.++++|+++|||++.++.+. +..++++.+.++
T Consensus 1 ki~vl~Sg~Gsn~~al~~~~~~~~l~~~i~~visn~---~~~~~~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~ 77 (207)
T PLN02331 1 KLAVFVSGGGSNFRAIHDACLDGRVNGDVVVVVTNK---PGCGGAEYARENGIPVLVYPKTKGEPDGLSPDELVDALRGA 77 (207)
T ss_pred CEEEEEeCCChhHHHHHHHHHcCCCCeEEEEEEEeC---CCChHHHHHHHhCCCEEEeccccCCCcccchHHHHHHHHhc
Confidence 799999999999999999999999999999999998 46788999999999999876432 123567888786
Q ss_pred CCCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCCCCCCCCC----hHHHHH
Q 024063 122 NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG----KPAKQA 197 (273)
Q Consensus 122 ~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~----~p~~~a 197 (273)
++|++|++|||+ +||+++++.++.++||+||||||+|||. .|++|+
T Consensus 78 ~~Dliv~agy~~------------------------------il~~~~l~~~~~~~iNiHpSLLP~yrG~g~~~~~v~~a 127 (207)
T PLN02331 78 GVDFVLLAGYLK------------------------------LIPVELVRAYPRSILNIHPALLPAFGGKGYYGIKVHKA 127 (207)
T ss_pred CCCEEEEeCcch------------------------------hCCHHHHhhCCCCEEEEeCccccCCCCCCcccchHHHH
Confidence 899999999999 9999999999999999999999999995 688888
Q ss_pred H-HhCCCEeEEEEEEecCccCCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCceeecCCceee
Q 024063 198 F-DAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVV 272 (273)
Q Consensus 198 i-~~G~~~~GvT~H~~~~~~D~G~Ii~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~i~~l~~g~~~~~~~~k~~v 272 (273)
+ .+|++++|+|+|+|++++|+||||+|+.++|.++||.++|++|+.+.++++++++++.+.+|++..++ .+|++
T Consensus 128 ~i~~g~~~tG~Tvh~v~~~~D~G~Ii~Q~~~~I~~~dt~~~L~~r~~~~e~~ll~~al~~l~~~~~~~~~-~~~~~ 202 (207)
T PLN02331 128 VIASGARYSGPTVHFVDEHYDTGRILAQRVVPVLATDTPEELAARVLHEEHQLYVEVVAALCEERIVWRE-DGVPL 202 (207)
T ss_pred HHHcCCCeEEEEEEEECCCCCCCCeEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEeCC-CeeEE
Confidence 5 58999999999999999999999999999999999999999999999999999999999999988776 66654
No 9
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=100.00 E-value=1.2e-45 Score=323.59 Aligned_cols=184 Identities=33% Similarity=0.509 Sum_probs=170.1
Q ss_pred ceEEEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCC-C---chHHHHHHHhc-
Q 024063 47 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE-N---EREEELLELVQ- 121 (273)
Q Consensus 47 ~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~-~---~~~~~~~~~l~- 121 (273)
+|||||+||+|+|+++++++++++.++++|++|||+++ ++.+.++|+++|||++.++.+. + ..++++.+.++
T Consensus 1 ~riail~sg~gs~~~~ll~~~~~~~l~~~I~~vi~~~~---~~~~~~~A~~~gip~~~~~~~~~~~~~~~~~~~~~~l~~ 77 (190)
T TIGR00639 1 KRIVVLISGNGSNLQAIIDACKEGKIPASVVLVISNKP---DAYGLERAAQAGIPTFVLSLKDFPSREAFDQAIIEELRA 77 (190)
T ss_pred CeEEEEEcCCChhHHHHHHHHHcCCCCceEEEEEECCc---cchHHHHHHHcCCCEEEECccccCchhhhhHHHHHHHHh
Confidence 58999999999999999999999999999999999984 4788999999999998766321 1 12567888886
Q ss_pred -CCCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCCCCCCCCChHHHHHHHh
Q 024063 122 -NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDA 200 (273)
Q Consensus 122 -~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~p~~~ai~~ 200 (273)
++|++|++||++ ++++++++.++.+++|+|||+||+|||.+|++||+.+
T Consensus 78 ~~~D~iv~~~~~~------------------------------il~~~~l~~~~~~~iNiHpslLP~yrG~~p~~~ai~~ 127 (190)
T TIGR00639 78 HEVDLVVLAGFMR------------------------------ILGPTFLSRFAGRILNIHPSLLPAFPGLHAVEQALEA 127 (190)
T ss_pred cCCCEEEEeCcch------------------------------hCCHHHHhhccCCEEEEeCCcccCCCCccHHHHHHHc
Confidence 899999999999 9999999999999999999999999999999999999
Q ss_pred CCCEeEEEEEEecCccCCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCce
Q 024063 201 GVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVL 263 (273)
Q Consensus 201 G~~~~GvT~H~~~~~~D~G~Ii~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~i~~l~~g~~~ 263 (273)
|++++|+|+|+|++++|+|||+.|++++|.++||.++|++|+.+.+++++.++++++.+|+++
T Consensus 128 g~~~tGvTih~v~~~~D~G~Ii~q~~~~i~~~dt~~~L~~k~~~~~~~l~~~~l~~~~~g~~~ 190 (190)
T TIGR00639 128 GVKESGCTVHYVDEEVDTGPIIAQAKVPILPEDTEETLEQRIHKQEHRIYPLAIAWFAQGRLK 190 (190)
T ss_pred CCCeEEEEEEEEcCCCcCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcC
Confidence 999999999999999999999999999999999999999999999999999999999998753
No 10
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=100.00 E-value=2.1e-45 Score=324.32 Aligned_cols=188 Identities=35% Similarity=0.486 Sum_probs=172.7
Q ss_pred CceEEEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCC-CCc---hHHHHHHHhc
Q 024063 46 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAK-ENE---REEELLELVQ 121 (273)
Q Consensus 46 ~~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~-~~~---~~~~~~~~l~ 121 (273)
|+|||||+||+|+++++++++++++.+.++|++|||+++ ++.+.++|+++|||++.++.. .+. .++++.+.++
T Consensus 1 m~ki~vl~sg~gs~~~~ll~~~~~~~~~~~I~~vvs~~~---~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~ 77 (200)
T PRK05647 1 MKRIVVLASGNGSNLQAIIDACAAGQLPAEIVAVISDRP---DAYGLERAEAAGIPTFVLDHKDFPSREAFDAALVEALD 77 (200)
T ss_pred CceEEEEEcCCChhHHHHHHHHHcCCCCcEEEEEEecCc---cchHHHHHHHcCCCEEEECccccCchhHhHHHHHHHHH
Confidence 589999999999999999999999988899999999984 567899999999999886632 111 1456777775
Q ss_pred --CCCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCCCCCCCCChHHHHHHH
Q 024063 122 --NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFD 199 (273)
Q Consensus 122 --~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~p~~~ai~ 199 (273)
++|++|++||++ ++|+++++.++.++||+|||+||+|||++|++||+.
T Consensus 78 ~~~~D~iv~~~~~~------------------------------ii~~~~l~~~~~~~iNiHpslLP~yrG~~p~~~ai~ 127 (200)
T PRK05647 78 AYQPDLVVLAGFMR------------------------------ILGPTFVSAYEGRIINIHPSLLPSFPGLHTHEQALE 127 (200)
T ss_pred HhCcCEEEhHHhhh------------------------------hCCHHHHhhccCCEEEEeCccccCCCCccHHHHHHH
Confidence 899999999999 999999999999999999999999999999999999
Q ss_pred hCCCEeEEEEEEecCccCCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCceeec
Q 024063 200 AGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYE 266 (273)
Q Consensus 200 ~G~~~~GvT~H~~~~~~D~G~Ii~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~i~~l~~g~~~~~~ 266 (273)
+|++++|+|+|+|++++|+|||+.|++++|.++||.++|++|+.+.+.+++.++++.+.+|++...+
T Consensus 128 ~g~~~tG~Tvh~~~~~~D~G~Ii~q~~~~i~~~dt~~~L~~kl~~~~~~ll~~~i~~l~~g~~~~~~ 194 (200)
T PRK05647 128 AGVKVHGCTVHFVDEGLDTGPIIAQAAVPVLAGDTEESLAARVLEQEHRLYPLVVKWFAEGRLKLEG 194 (200)
T ss_pred cCCCeEEEEEEEEcCCCcCCCeEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEeeC
Confidence 9999999999999999999999999999999999999999999999999999999999999987654
No 11
>KOG3076 consensus 5'-phosphoribosylglycinamide formyltransferase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.2e-45 Score=314.82 Aligned_cols=194 Identities=43% Similarity=0.624 Sum_probs=181.3
Q ss_pred CCceEEEEEECCchhHHHHHHhhhcCCC--CceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCC-Cc---hHHHHHH
Q 024063 45 PKYKVAVLASKQEHCLVDFLYGWQEGKL--PVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE-NE---REEELLE 118 (273)
Q Consensus 45 ~~~kiav~~Sg~g~~l~~ll~~~~~~~l--~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~-~~---~~~~~~~ 118 (273)
++.|++|++||.|+||++|+++.++|.+ +++|+.|+||+ .++..+++|+++|||+.+++++. .. -+.++.+
T Consensus 5 ~r~rvavliSGtGsNlqaLid~~r~~~l~~~a~VvlviSnk---~~~~GL~rA~~~gIPt~vip~k~~a~R~~~d~eL~~ 81 (206)
T KOG3076|consen 5 RRARVAVLISGTGSNLQALIDATRDGSLGPNADVVLVISNK---KGVYGLERAADAGIPTLVIPHKRFASREKYDNELAE 81 (206)
T ss_pred cceeEEEEEecCchhHHHHHHhhcCCCcCCCceEEEEEecc---ccchhhhHHHHCCCCEEEeccccccccccCcHHHHH
Confidence 5689999999999999999999999998 89999999998 57889999999999999998642 11 2356777
Q ss_pred Hhc--CCCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCCCCCCCCChHHHH
Q 024063 119 LVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQ 196 (273)
Q Consensus 119 ~l~--~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~p~~~ 196 (273)
.+. ++|+|++||||+ ||+++|++.|+.++||+||||||+|+|.+++..
T Consensus 82 ~l~e~~~d~v~lAG~M~------------------------------iLs~~fl~~~~~~iiNIHPaLlpaFkG~~a~k~ 131 (206)
T KOG3076|consen 82 VLLELGTDLVCLAGYMR------------------------------ILSGEFLSQLPKRIINIHPALLPAFKGLHAIKQ 131 (206)
T ss_pred HHHHhCCCEEEehhhHH------------------------------HcCHHHHhhcccceEecccccccccCCchHHHH
Confidence 665 899999999999 999999999999999999999999999999999
Q ss_pred HHHhCCCEeEEEEEEecCccCCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCceeecCCcee
Q 024063 197 AFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTV 271 (273)
Q Consensus 197 ai~~G~~~~GvT~H~~~~~~D~G~Ii~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~i~~l~~g~~~~~~~~k~~ 271 (273)
|+..|.+.+|||+||+++++|+|+||.|..++|.++||.+++.+|+..+++.++++++..+++++.++++.|+|+
T Consensus 132 Aleagv~~~GctvHfV~EevD~G~iI~q~~v~V~~~Dt~esl~qrv~~aEH~~~~~Ai~~v~~~~~~~~~~~~~~ 206 (206)
T KOG3076|consen 132 ALEAGVKLSGCTVHFVIEEVDTGPIIAQMAVPVIPGDTLESLEQRVHDAEHKAFVEAIKAVCEGRVLPYETGRTV 206 (206)
T ss_pred HHHhccccccceEEEehhhccCCCceEEEeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcceeCCCCCcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988874
No 12
>PLN02285 methionyl-tRNA formyltransferase
Probab=100.00 E-value=2.3e-42 Score=326.01 Aligned_cols=189 Identities=24% Similarity=0.361 Sum_probs=170.1
Q ss_pred CCCCceEEEEEECC--chhHHHHHHhhhcCCCCceEEEEeeCCCCCC-------CcHHHHHHHHcCCCEEEEcCCCCchH
Q 024063 43 IDPKYKVAVLASKQ--EHCLVDFLYGWQEGKLPVEITCVISNHDRGP-------NSHVIRFLERHGIPYHYLCAKENERE 113 (273)
Q Consensus 43 ~~~~~kiav~~Sg~--g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~-------~~~~~~~a~~~gIp~~~~~~~~~~~~ 113 (273)
.++++||+||||+. .+||++|+++++++..+++|++|||+++++. .+++.++|+++|||++++....+.++
T Consensus 3 ~~~~~kI~f~Gt~~fa~~~L~~L~~~~~~~~~~~~iv~Vvt~~~~~~gr~~~~~~~pv~~~A~~~gIp~~~v~~~~~~~~ 82 (334)
T PLN02285 3 SGRKKRLVFLGTPEVAATVLDALLDASQAPDSAFEVAAVVTQPPARRGRGRKLMPSPVAQLALDRGFPPDLIFTPEKAGE 82 (334)
T ss_pred CCCccEEEEEECCHHHHHHHHHHHhhhhccCCCCeEEEEEeCCCCcccCCcccCCCHHHHHHHHcCCCcceecCccccCC
Confidence 35789999999997 4699999998888887899999999998753 35799999999999654322223445
Q ss_pred HHHHHHhc--CCCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCCCCCCCCC
Q 024063 114 EELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG 191 (273)
Q Consensus 114 ~~~~~~l~--~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~ 191 (273)
+++.+.++ ++|++|+++||+ +||+++++.++.|+||+||||||+|||+
T Consensus 83 ~~~~~~l~~~~~Dliv~~~~~~------------------------------ilp~~~l~~~~~g~iNiHpSLLP~yRG~ 132 (334)
T PLN02285 83 EDFLSALRELQPDLCITAAYGN------------------------------ILPQKFLDIPKLGTVNIHPSLLPLYRGA 132 (334)
T ss_pred HHHHHHHHhhCCCEEEhhHhhh------------------------------hcCHHHHhhccCCEEEEecccccCCCCc
Confidence 66777776 899999999999 9999999999999999999999999999
Q ss_pred hHHHHHHHhCCCEeEEEEEEecCccCCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 024063 192 KPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELR 261 (273)
Q Consensus 192 ~p~~~ai~~G~~~~GvT~H~~~~~~D~G~Ii~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~i~~l~~g~ 261 (273)
+|++|||++|++++|+|+|+|++++|+|||+.|+.++|.++||.++|++|+.+++++++.+++..+.+|+
T Consensus 133 ~pi~~ai~~G~~~tGvTih~~~~~~D~G~Ii~q~~~~I~~~dt~~~L~~kl~~~~~~ll~~~l~~l~~~~ 202 (334)
T PLN02285 133 APVQRALQDGVNETGVSVAFTVRALDAGPVIAQERVEVDEDIKAPELLPLLFELGTKLLLRELPSVLDGS 202 (334)
T ss_pred CHHHHHHHcCCCcEEEEEEEECCCccCCCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999885
No 13
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.7e-41 Score=315.50 Aligned_cols=183 Identities=24% Similarity=0.327 Sum_probs=167.6
Q ss_pred CceEEEEEECCch--hHHHHHHhhhcCCCCceEEEEeeCCCCCC-------CcHHHHHHHHcCCCEEEEcCCCCchHHHH
Q 024063 46 KYKVAVLASKQEH--CLVDFLYGWQEGKLPVEITCVISNHDRGP-------NSHVIRFLERHGIPYHYLCAKENEREEEL 116 (273)
Q Consensus 46 ~~kiav~~Sg~g~--~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~-------~~~~~~~a~~~gIp~~~~~~~~~~~~~~~ 116 (273)
++||+|||+...+ +|++|+++ +++|++|+|.+|++. .++++++|.++|||++. +. +.+++|+
T Consensus 1 ~mkivF~GTp~fa~~~L~~L~~~------~~eivaV~Tqpdkp~gR~~~l~~spVk~~A~~~~ipv~q-P~--~l~~~e~ 71 (307)
T COG0223 1 MMRIVFFGTPEFAVPSLEALIEA------GHEIVAVVTQPDKPAGRGKKLTPSPVKRLALELGIPVFQ-PE--KLNDPEF 71 (307)
T ss_pred CcEEEEEcCchhhHHHHHHHHhC------CCceEEEEeCCCCccCCCCcCCCChHHHHHHHcCCceec-cc--cCCcHHH
Confidence 5899999999764 78999874 389999999999874 38899999999999874 43 3455678
Q ss_pred HHHhc--CCCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCCCCCCCCChHH
Q 024063 117 LELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPA 194 (273)
Q Consensus 117 ~~~l~--~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~p~ 194 (273)
.+.++ ++|++|++.|++ +||+++|+.+++||+|+||||||+|||++|+
T Consensus 72 ~~~l~~l~~D~ivvvayG~------------------------------ilp~~iL~~~~~G~iNvH~SLLPr~RGaAPI 121 (307)
T COG0223 72 LEELAALDPDLIVVVAYGQ------------------------------ILPKEILDLPPYGCINLHPSLLPRYRGAAPI 121 (307)
T ss_pred HHHHhccCCCEEEEEehhh------------------------------hCCHHHHhcCcCCeEEecCccCccccCccHH
Confidence 88886 899999999999 9999999999999999999999999999999
Q ss_pred HHHHHhCCCEeEEEEEEecCccCCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCceeecC
Q 024063 195 KQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEM 267 (273)
Q Consensus 195 ~~ai~~G~~~~GvT~H~~~~~~D~G~Ii~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~i~~l~~g~~~~~~~ 267 (273)
+|||++|+++||+|+|+|++++|+|||+.|+.++|.+.||..+|++|+.+.+.+++.+++..+.+|++.+..+
T Consensus 122 q~aI~~Gd~~TGvTim~M~~~lDaG~Il~q~~~~I~~~dta~~L~~kLa~~ga~lL~~~L~~i~~g~~~~~~Q 194 (307)
T COG0223 122 QWAILNGDTETGVTIMQMDEGLDAGDILAQREVPIEPDDTAGSLHDKLAELGAELLLETLPQLEAGTLTPIPQ 194 (307)
T ss_pred HHHHHcCCcccceEEEEccccCCCcceeeeEEeccCCcccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999888553
No 14
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=100.00 E-value=8.4e-41 Score=289.65 Aligned_cols=175 Identities=34% Similarity=0.493 Sum_probs=149.9
Q ss_pred ceEEEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCC-C---chHHHHHHHhc-
Q 024063 47 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE-N---EREEELLELVQ- 121 (273)
Q Consensus 47 ~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~-~---~~~~~~~~~l~- 121 (273)
|||+||+||++++++.+++++.++..++++++|||++++ ......+.+.++|...+.... . ..++++.+.++
T Consensus 1 mrI~~~~Sg~~~~~~~~l~~l~~~~~~~~iv~Vit~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 77 (181)
T PF00551_consen 1 MRIVFFGSGSGSFLKALLEALKARGHNVEIVLVITNPDK---PRGRSRAIKNGIPAQVADEKNFQPRSENDEELLELLES 77 (181)
T ss_dssp EEEEEEESSSSHHHHHHHHHHHTTSSEEEEEEEEESSTT---THHHHHHHHTTHHEEEHHGGGSSSHHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCHHHHHHHHHHHhCCCCceEEEEeccccc---cccccccccCCCCEEeccccCCCchHhhhhHHHHHHHh
Confidence 799999999999999999998887766789999999864 356788999999998776321 1 23567888886
Q ss_pred -CCCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCCCCCCCCChHHHHHHHh
Q 024063 122 -NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDA 200 (273)
Q Consensus 122 -~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~p~~~ai~~ 200 (273)
++|++|++||++ ++|+++++.++.++||+|||+||+|||++|++||+++
T Consensus 78 ~~~Dl~v~~~~~~------------------------------il~~~~l~~~~~~~iNiHpslLP~yrG~~p~~~ai~~ 127 (181)
T PF00551_consen 78 LNPDLIVVAGYGR------------------------------ILPKEFLSIPPYGIINIHPSLLPKYRGASPIQWAILN 127 (181)
T ss_dssp TT-SEEEESS-SS---------------------------------HHHHHHSTTSEEEEESSSTTTTBSSTHHHHHHHH
T ss_pred hccceeehhhhHH------------------------------HhhhhhhhcccccEEEEeecCCccCCCcchhhhhhcC
Confidence 899999999999 9999999999999999999999999999999999999
Q ss_pred CCCEeEEEEEEecCccCCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 024063 201 GVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAI 254 (273)
Q Consensus 201 G~~~~GvT~H~~~~~~D~G~Ii~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~i 254 (273)
|++++|+|+|+|++++|+|+|+.|+.++|.++||.++|++|+.+++.+++.++|
T Consensus 128 g~~~~G~Tvh~~~~~~D~G~Ii~q~~~~i~~~dt~~~l~~r~~~~~~~~l~~ai 181 (181)
T PF00551_consen 128 GEKETGVTVHFMDEGLDAGPIIAQKKFPIEPDDTAESLYERLAEAEAELLVEAI 181 (181)
T ss_dssp TSSEEEEEEEEE-SSTTTSEEEEEEEEE--TT--HHHHHHHHHHHHHHHHHHHH
T ss_pred CcceeeeEEEEecccCcCCCeEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999986
No 15
>PRK06988 putative formyltransferase; Provisional
Probab=100.00 E-value=1.8e-39 Score=303.71 Aligned_cols=182 Identities=24% Similarity=0.319 Sum_probs=162.8
Q ss_pred CceEEEEEECCc--hhHHHHHHhhhcCCCCceEEEEeeCCCCCC----CcHHHHHHHHcCCCEEEEcCCCCchHHHHHHH
Q 024063 46 KYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP----NSHVIRFLERHGIPYHYLCAKENEREEELLEL 119 (273)
Q Consensus 46 ~~kiav~~Sg~g--~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~----~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~ 119 (273)
|+||+||||+.. .||++|++. .++|++|+|++|++. .+++.++|+++|||++... +.+++++.+.
T Consensus 2 ~mkIvf~Gs~~~a~~~L~~L~~~------~~~i~~Vvt~~d~~~~~~~~~~v~~~A~~~gip~~~~~---~~~~~~~~~~ 72 (312)
T PRK06988 2 KPRAVVFAYHNVGVRCLQVLLAR------GVDVALVVTHEDNPTENIWFGSVAAVAAEHGIPVITPA---DPNDPELRAA 72 (312)
T ss_pred CcEEEEEeCcHHHHHHHHHHHhC------CCCEEEEEcCCCCCccCcCCCHHHHHHHHcCCcEEccc---cCCCHHHHHH
Confidence 489999999873 488988864 378999999987653 3589999999999998522 2345667777
Q ss_pred hc--CCCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCCCCCCCCChHHHHH
Q 024063 120 VQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQA 197 (273)
Q Consensus 120 l~--~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~p~~~a 197 (273)
++ ++|++|+++|++ +||+++++.++.|+||+|||+||+|||++|++||
T Consensus 73 l~~~~~Dliv~~~~~~------------------------------iip~~il~~~~~g~iNiHpslLP~yRG~~pi~~a 122 (312)
T PRK06988 73 VAAAAPDFIFSFYYRH------------------------------MIPVDLLALAPRGAYNMHGSLLPKYRGRVPVNWA 122 (312)
T ss_pred HHhcCCCEEEEehhcc------------------------------ccCHHHHhcCCCCEEEeeCccccCCCCcCHHHHH
Confidence 76 899999999999 9999999999999999999999999999999999
Q ss_pred HHhCCCEeEEEEEEecCccCCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCceeec
Q 024063 198 FDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYE 266 (273)
Q Consensus 198 i~~G~~~~GvT~H~~~~~~D~G~Ii~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~i~~l~~g~~~~~~ 266 (273)
|++|++++|+|+|+|++++|+|||++|+.++|.++||..+|++|+..++.+++.+++..+.+|++.+.+
T Consensus 123 i~~g~~~tGvTih~~~~~~D~G~Il~q~~~~I~~~dt~~~L~~kl~~~~~~ll~~~l~~l~~g~~~~~~ 191 (312)
T PRK06988 123 VLNGETETGATLHEMVAKPDAGAIVDQTAVPILPDDTAAQVFDKVTVAAEQTLWRVLPALLAGEAPHLP 191 (312)
T ss_pred HHcCCCceEEEEEEECCCCCCCCeEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccc
Confidence 999999999999999999999999999999999999999999999999999999999999999876544
No 16
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=100.00 E-value=3.3e-39 Score=301.12 Aligned_cols=182 Identities=25% Similarity=0.348 Sum_probs=162.8
Q ss_pred ceEEEEEECCc--hhHHHHHHhhhcCCCCceEEEEeeCCCCCC-------CcHHHHHHHHcCCCEEEEcCCCCchHHHHH
Q 024063 47 YKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP-------NSHVIRFLERHGIPYHYLCAKENEREEELL 117 (273)
Q Consensus 47 ~kiav~~Sg~g--~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~-------~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~ 117 (273)
|||+||||+.. .+|++|++. .++|++|+|.++++. .+++.++|+++|||++... +.+++++.
T Consensus 1 mkIvf~G~~~~a~~~L~~L~~~------~~~i~~Vvt~~~~~~~r~~~~~~~~v~~~a~~~~Ip~~~~~---~~~~~~~~ 71 (309)
T PRK00005 1 MRIVFMGTPEFAVPSLKALLES------GHEVVAVVTQPDRPAGRGKKLTPSPVKQLALEHGIPVLQPE---KLRDPEFL 71 (309)
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCcEEEEECCCCCCCCCCCCCCCCHHHHHHHHcCCCEECcC---CCCCHHHH
Confidence 69999999875 488888864 378999999887542 3679999999999997532 23355677
Q ss_pred HHhc--CCCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCCCCCCCCChHHH
Q 024063 118 ELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAK 195 (273)
Q Consensus 118 ~~l~--~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~p~~ 195 (273)
+.++ ++|++|+++|++ +||+++++.++.|+||+|||+||+|||++|++
T Consensus 72 ~~l~~~~~Dliv~~~~~~------------------------------iip~~il~~~~~g~iNiHpslLP~yRG~~pi~ 121 (309)
T PRK00005 72 AELAALNADVIVVVAYGQ------------------------------ILPKAVLDIPRLGCINLHASLLPRWRGAAPIQ 121 (309)
T ss_pred HHHHhcCcCEEEEehhhc------------------------------ccCHHHHhcCCCCEEEEeCcccccCCCccHHH
Confidence 7776 899999999999 99999999999999999999999999999999
Q ss_pred HHHHhCCCEeEEEEEEecCccCCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCceeecC
Q 024063 196 QAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEM 267 (273)
Q Consensus 196 ~ai~~G~~~~GvT~H~~~~~~D~G~Ii~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~i~~l~~g~~~~~~~ 267 (273)
|||++|++++|+|+|+|++++|+|+|+.|++++|.++||..+|++|+.+++.+++.++++.+.+|++.+.++
T Consensus 122 wai~~g~~~~GvTih~~~~~~D~G~Ii~q~~~~i~~~dt~~~L~~kl~~~~~~ll~~~i~~l~~g~~~~~~Q 193 (309)
T PRK00005 122 RAIIAGDAETGVTIMQMDEGLDTGDMLLKAEVPITPTDTAGELHDKLAELGADLLVETLKGLEDGTLTPIPQ 193 (309)
T ss_pred HHHHcCCCeEEEEEEEECCcccCCCEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCceecC
Confidence 999999999999999999999999999999999999999999999999999999999999999998877553
No 17
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=100.00 E-value=4.8e-39 Score=300.75 Aligned_cols=181 Identities=27% Similarity=0.387 Sum_probs=161.0
Q ss_pred ceEEEEEECCc--hhHHHHHHhhhcCCCCceEEEEeeCCCCCC-------CcHHHHHHHHcCCCEEEEcCCCCchHHHHH
Q 024063 47 YKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP-------NSHVIRFLERHGIPYHYLCAKENEREEELL 117 (273)
Q Consensus 47 ~kiav~~Sg~g--~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~-------~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~ 117 (273)
|||+||||+.. .+|++|++. +++|++|+|++|++. .+++.++|+++|||++...+ .+.+++.
T Consensus 1 mkIvf~Gs~~~a~~~L~~L~~~------~~~i~~Vvt~pd~~~~r~~~~~~~~v~~~A~~~~Ipv~~~~~---~~~~~~~ 71 (313)
T TIGR00460 1 LRIVFFGTPTFSLPVLEELRED------NFEVVGVVTQPDKPAGRGKKLTPPPVKVLAEEKGIPVFQPEK---QRQLEEL 71 (313)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCcEEEEEcCCCCccCCCCCCCCChHHHHHHHcCCCEEecCC---CCcHHHH
Confidence 59999999875 478888763 389999999987642 36799999999999986432 2233556
Q ss_pred HHhc--CCCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCCCCCCCCChHHH
Q 024063 118 ELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAK 195 (273)
Q Consensus 118 ~~l~--~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~p~~ 195 (273)
+.++ ++|++|+++|++ +||+++++.++.|+||+|||+||+|||++|++
T Consensus 72 ~~l~~~~~Dliv~~~~~~------------------------------iip~~il~~~~~g~iNiHpSlLP~yRG~~pi~ 121 (313)
T TIGR00460 72 PLVRELKPDVIVVVSFGK------------------------------ILPKEFLDLFPYGCINVHPSLLPRWRGGAPIQ 121 (313)
T ss_pred HHHHhhCCCEEEEccchh------------------------------hCCHHHHhhccCCEEEecCccccCCCCccHHH
Confidence 6665 899999999999 99999999999999999999999999999999
Q ss_pred HHHHhCCCEeEEEEEEecCccCCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCceeec
Q 024063 196 QAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYE 266 (273)
Q Consensus 196 ~ai~~G~~~~GvT~H~~~~~~D~G~Ii~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~i~~l~~g~~~~~~ 266 (273)
|||++|++++|+|+|+|++++|+|||+.|+.++|.+++|..+|++|+..++.+++.++++.+.+|+..+.+
T Consensus 122 wai~~G~~~tGvTih~~~~~~D~G~Ii~q~~~~I~~~~t~~~l~~~l~~~~~~ll~~~l~~l~~~~~~~~~ 192 (313)
T TIGR00460 122 RAILNGDKKTGVTIMQMVPKMDAGDILKQETFPIEEEDNSGTLSDKLSELGAQLLIETLKELPEGKNKPEP 192 (313)
T ss_pred HHHHCCCCeEEEEEEEEccccCCCCeEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999887644
No 18
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=100.00 E-value=2.4e-36 Score=306.23 Aligned_cols=183 Identities=22% Similarity=0.268 Sum_probs=163.2
Q ss_pred ceEEEEEECCc--hhHHHHHHhhhcCCCCceEEEEeeCCCCCC----CcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHh
Q 024063 47 YKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP----NSHVIRFLERHGIPYHYLCAKENEREEELLELV 120 (273)
Q Consensus 47 ~kiav~~Sg~g--~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~----~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l 120 (273)
|||+||+|... .+|++|++. .++|++|+|.+|++. .+++.++|+++|||++... + .+++++.+.+
T Consensus 1 mkivf~g~~~~a~~~l~~L~~~------~~~i~~V~t~pd~~~~~~~~~~v~~~a~~~~ip~~~~~-~--~~~~~~~~~l 71 (660)
T PRK08125 1 MKAVVFAYHDIGCVGIEALLAA------GYEIAAVFTHTDNPGENHFFGSVARLAAELGIPVYAPE-D--VNHPLWVERI 71 (660)
T ss_pred CeEEEECCCHHHHHHHHHHHHC------CCcEEEEEeCCCCCcCCCCcCHHHHHHHHcCCcEEeeC-C--CCcHHHHHHH
Confidence 68999998864 478888763 378999999987653 3579999999999998643 2 3345667777
Q ss_pred c--CCCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCCCCCCCCChHHHHHH
Q 024063 121 Q--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAF 198 (273)
Q Consensus 121 ~--~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~p~~~ai 198 (273)
+ ++|++|+++|++ |||+++++.++.|+||+|||+||+|||++|++|||
T Consensus 72 ~~~~~D~iv~~~~~~------------------------------ii~~~il~~~~~g~iN~H~slLP~yRG~~p~~wai 121 (660)
T PRK08125 72 RELAPDVIFSFYYRN------------------------------LLSDEILQLAPAGAFNLHGSLLPKYRGRAPLNWVL 121 (660)
T ss_pred HhcCCCEEEEccccc------------------------------cCCHHHHhhcCCCEEEEeCCcccCCCCcCHHHHHH
Confidence 6 899999999999 99999999999999999999999999999999999
Q ss_pred HhCCCEeEEEEEEecCccCCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCceeecCC
Q 024063 199 DAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMN 268 (273)
Q Consensus 199 ~~G~~~~GvT~H~~~~~~D~G~Ii~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~i~~l~~g~~~~~~~~ 268 (273)
++|++++|+|+|+|++++|+|||+.|+.++|.++||..+|++|+.+++.+++.++++.+.+|++.+.+|+
T Consensus 122 ~~g~~~~GvTi~~~~~~~D~G~I~~q~~~~i~~~dt~~~l~~~l~~~~~~l~~~~l~~i~~~~~~~~~Q~ 191 (660)
T PRK08125 122 VNGETETGVTLHRMVKRADAGAIVAQQRVAIAPDDTALTLHHKLCHAARQLLEQTLPAIKHGNIPEIPQD 191 (660)
T ss_pred HcCCCcEEEEEEEECCCccCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999988775544
No 19
>PRK07579 hypothetical protein; Provisional
Probab=100.00 E-value=5.9e-34 Score=257.93 Aligned_cols=172 Identities=24% Similarity=0.325 Sum_probs=145.6
Q ss_pred CceEEEEEECC--chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHH-HcCCCEEEEcCCCCchHHHHHHHhcC
Q 024063 46 KYKVAVLASKQ--EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLE-RHGIPYHYLCAKENEREEELLELVQN 122 (273)
Q Consensus 46 ~~kiav~~Sg~--g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~-~~gIp~~~~~~~~~~~~~~~~~~l~~ 122 (273)
|+||.|++... ..|++.|++.. +++++++.||.++.+. ++. .+++|...++- .+.+.+++.+
T Consensus 1 ~k~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~-----~~~~~~~~~~ 65 (245)
T PRK07579 1 MKTILVLTDNVHAHALAVDLIARK--NDMDVDYFCSFKSQTS--------FAKEIYQSPIKQLDV-----AERVAEIVER 65 (245)
T ss_pred CceEEEEcccHHHHHHHHHHHhhc--cCcceEEEEeccCCcc--------cccccccccccCcch-----hhhHHhhhcC
Confidence 58999999875 36999998863 4678999999988742 222 34555433321 1235556668
Q ss_pred CCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCCCCCCCCChHHHHHHHhCC
Q 024063 123 TDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGV 202 (273)
Q Consensus 123 ~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~p~~~ai~~G~ 202 (273)
+|++|+++|++ |||+++++.+ ++||+||||||+|||++|++|||.+|+
T Consensus 66 ~DliVvvayg~------------------------------ilp~~iL~~~--~~iNiHpSLLP~yRGaaPi~wAI~nGe 113 (245)
T PRK07579 66 YDLVLSFHCKQ------------------------------RFPAKLVNGV--RCINIHPGFNPYNRGWFPQVFSIINGL 113 (245)
T ss_pred CCEEEEchhhc------------------------------cCCHHHHhhC--CEEEEcCCcCCCCCCcCHHHHHHHCCC
Confidence 99999999999 9999999976 599999999999999999999999998
Q ss_pred CEeEEEEEEecCccCCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCceee
Q 024063 203 KLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPY 265 (273)
Q Consensus 203 ~~~GvT~H~~~~~~D~G~Ii~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~i~~l~~g~~~~~ 265 (273)
+ +|+|+|+|++++|+|||+.|++++|.++||+++|++|+..++.+++.+++.++.+|++.+.
T Consensus 114 ~-tGvTih~mde~lDtGdIi~Q~~v~I~~~dt~~sL~~kl~~~~~~ll~e~L~~i~~g~~~~~ 175 (245)
T PRK07579 114 K-IGATIHEMDEQLDHGPIIAQREVEIESWDSSGSVYARVMDIERELVLEHFDAIRDGSYTAK 175 (245)
T ss_pred e-EEEEEEEEcCCCCCCCeeEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 5 9999999999999999999999999999999999999999999999999999999987654
No 20
>KOG3082 consensus Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=6.8e-24 Score=195.12 Aligned_cols=173 Identities=20% Similarity=0.294 Sum_probs=139.9
Q ss_pred ceEEEEEECCch--hHHHHHHhhhcCCCCceEEEEeeCCCCC-------CCcHHHHHHHHcCCCEEEEcCCCCchHHHHH
Q 024063 47 YKVAVLASKQEH--CLVDFLYGWQEGKLPVEITCVISNHDRG-------PNSHVIRFLERHGIPYHYLCAKENEREEELL 117 (273)
Q Consensus 47 ~kiav~~Sg~g~--~l~~ll~~~~~~~l~~~i~~Vvs~~~~~-------~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~ 117 (273)
+.+-+++|...+ .++.|..+. +.+.+++.++.. ..+++...|...|.++...-..... ..
T Consensus 7 ~nv~~~~sd~~~~~~~~~l~~~~-------~~~~iv~~pp~~~~~~k~~lpsP~a~~a~~k~la~~kl~p~~k~----~~ 75 (338)
T KOG3082|consen 7 LNVIFLGSDEFSIPILRKLIGCV-------QRVRIVSAPPKRQSRRKEILPSPAAMEANAKGLAYIKLQPGWKN----FH 75 (338)
T ss_pred cCcchhccccccchhhhhHHHHH-------HhhhhccCCcchhhccCccCCCccccccccccceeeeccChhhc----cc
Confidence 677788888754 466676653 234455554321 1356667777888887654321100 01
Q ss_pred HHhc-CCCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCCCCCCCCChHHHH
Q 024063 118 ELVQ-NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQ 196 (273)
Q Consensus 118 ~~l~-~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~p~~~ 196 (273)
+... +.|++|.|+|++ ++|.+++..+++|+||+||||||+|||++|+++
T Consensus 76 d~~~~~~~l~ItaSfGr------------------------------llp~kll~~~pyg~iNVHPSLLPk~RGaAPV~~ 125 (338)
T KOG3082|consen 76 DLMRPDDQLAITASFGR------------------------------LLPFKLLNQLPYGGINVHPSLLPKYRGAAPVQR 125 (338)
T ss_pred cccCCCcceEEEeehhc------------------------------cCcHHHHhhCCcceeecChhhcccccCcchHHH
Confidence 2333 789999999999 999999999999999999999999999999999
Q ss_pred HHHhCCCEeEEEEEEecC-ccCCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 024063 197 AFDAGVKLIGATSHFVTE-ELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCEL 260 (273)
Q Consensus 197 ai~~G~~~~GvT~H~~~~-~~D~G~Ii~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~i~~l~~g 260 (273)
|+++|+..||||+.++++ ++|.|+|++|+.++|.+..|..+|..-+...+++++.+.+.++.++
T Consensus 126 all~GD~~TGVTI~~i~p~rFD~G~ilAQ~~l~v~~~~t~~~L~~~Ls~~ga~lLir~l~~l~dq 190 (338)
T KOG3082|consen 126 ALLNGDTLTGVTIQTIDPKRFDKGPILAQEYLAVNPKETAPELTASLSSLGANLLIRSLYNLNDQ 190 (338)
T ss_pred HHhcCCcccceEEEEecccccccccceecceeccCccccchHHHHHHHhccchhhHHhhccchhh
Confidence 999999999999999998 8999999999999999999999999999999999999999988764
No 21
>KOG2452 consensus Formyltetrahydrofolate dehydrogenase [Nucleotide transport and metabolism]
Probab=99.83 E-value=7.9e-21 Score=183.39 Aligned_cols=182 Identities=19% Similarity=0.201 Sum_probs=146.9
Q ss_pred ceEEEEE-ECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCC-CcHHHHHHHHcCCCEEEEcC--CCCchHHHHHHHhc-
Q 024063 47 YKVAVLA-SKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGP-NSHVIRFLERHGIPYHYLCA--KENEREEELLELVQ- 121 (273)
Q Consensus 47 ~kiav~~-Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~-~~~~~~~a~~~gIp~~~~~~--~~~~~~~~~~~~l~- 121 (273)
|||||++ |--|.....-|. ++ .+||++|+|-+|+.. ..++.--|++-|+|++...+ +.+..-+++++..+
T Consensus 1 mkiaiigqs~fg~~vy~~lr--k~---gheiv~vftipdk~g~~d~l~~ea~kdgvpv~k~srwr~k~~~lp~~~~~y~~ 75 (881)
T KOG2452|consen 1 MKIAVIGQSLFGQEVYCHLR--KE---GHEVVGVFTVPDKDGKADPLGLEAEKDGVPVFKYSRWRAKAQALPDVVAKYQA 75 (881)
T ss_pred CeeEEechhhhhHHHHHHHH--hc---CceEEEEEEecCCCCCcCcccccccccCcceechhhhhhhccccHHHHHHHHh
Confidence 6899998 333433222222 23 499999999887654 45555667889999987542 22222345666555
Q ss_pred -CCCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCCCCCCCCChHHHHHHHh
Q 024063 122 -NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDA 200 (273)
Q Consensus 122 -~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~p~~~ai~~ 200 (273)
.+++-|+--..| +||-++++.+.++.|-.|||+||+.||++++.|.++.
T Consensus 76 ~gaelnvlpfcsq------------------------------fip~ei~~ap~~~siiyhps~lp~hrgasainwtli~ 125 (881)
T KOG2452|consen 76 LGAELNVLPFCSQ------------------------------FIPMEIISAPRHGSIIYHPSLLPRHRGASAINWTLIH 125 (881)
T ss_pred hcccccccchhhh------------------------------ccchhhcccccCCceeeccccCccccCccccceEEEe
Confidence 788887766666 7788889999999999999999999999999999999
Q ss_pred CCCEeEEEEEEecCccCCCCeeEEEEEecCCCCCHHHHHHHH-HHHHHHHHHHHHHHHHhCCce
Q 024063 201 GVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKS-EDVEKQCLAKAIKSYCELRVL 263 (273)
Q Consensus 201 G~~~~GvT~H~~~~~~D~G~Ii~Q~~~~I~~~dt~~~L~~rl-~~~~~~ll~~~i~~l~~g~~~ 263 (273)
|+++.|.++++.|.++|+|||++|+.+.+.++||..+||+|. ...+.....++++.+++|+..
T Consensus 126 gd~~~g~sifwaddgldtg~~llqk~c~v~~~dt~~tly~rfl~p~gi~~v~~~v~lia~gkap 189 (881)
T KOG2452|consen 126 GDKKGGFSIFWADDGLDTGDLLLQKECEVLPDDTVSTLYNRFLFPEGIKGVVQAVRLIAEGKAP 189 (881)
T ss_pred ccccCceEEEeecCCccccchhhhhhcccCCCccHHHHHHhhcChHHHHHHHHHHHHHhcCCCC
Confidence 999999999999999999999999999999999999999994 688999999999999998653
No 22
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=96.15 E-value=0.016 Score=49.34 Aligned_cols=118 Identities=14% Similarity=0.222 Sum_probs=69.8
Q ss_pred CceEEEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCC--CCCcHHH----HHHHHcCCCEEEEcCCCCchHHHHHHH
Q 024063 46 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDR--GPNSHVI----RFLERHGIPYHYLCAKENEREEELLEL 119 (273)
Q Consensus 46 ~~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~--~~~~~~~----~~a~~~gIp~~~~~~~~~~~~~~~~~~ 119 (273)
..||+++|-+.+.....++..+.. ++.+ +.+++.+.- +.+..+. +.+.++|-.+.... .+.+.
T Consensus 2 gl~i~~vGD~~~rv~~Sl~~~~~~--~g~~-~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~--------~~~e~ 70 (158)
T PF00185_consen 2 GLKIAYVGDGHNRVAHSLIELLAK--FGME-VVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITD--------DIEEA 70 (158)
T ss_dssp TEEEEEESSTTSHHHHHHHHHHHH--TTSE-EEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEES--------SHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHHH--cCCE-EEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEe--------CHHHh
Confidence 368898886435455555554432 3466 334444321 1112344 55566776666542 14456
Q ss_pred hcCCCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCCCCCCCC
Q 024063 120 VQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKG 190 (273)
Q Consensus 120 l~~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG 190 (273)
++++|+|..-+|..+=. -|....+.-|..+.+..++++..+..++-+|| ||.+||
T Consensus 71 l~~aDvvy~~~~~s~~~--------------~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~--LP~~R~ 125 (158)
T PF00185_consen 71 LKGADVVYTDRWQSMGD--------------KERFKRLEKFKPYQVTEELMERAKPDAIFMHP--LPANRG 125 (158)
T ss_dssp HTT-SEEEEESSSCTTS--------------GGHHHHHHHHGGGSBSHHHHHTSSTT-EEEES--SS--BT
T ss_pred cCCCCEEEEcCcccccc--------------hHHHHHHHHhcCCccCHHHHHhcCCCcEEEeC--CCCCCC
Confidence 77999999988873100 12234445566689999999998888999999 599998
No 23
>PLN02342 ornithine carbamoyltransferase
Probab=94.22 E-value=0.29 Score=47.17 Aligned_cols=119 Identities=16% Similarity=0.209 Sum_probs=66.2
Q ss_pred CceEEEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCC-CEEEEcCCCCchHHHHHHHhcCCC
Q 024063 46 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGI-PYHYLCAKENEREEELLELVQNTD 124 (273)
Q Consensus 46 ~~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gI-p~~~~~~~~~~~~~~~~~~l~~~D 124 (273)
..||+++|-++. .+..++.++. .++.++. +++.+.-.....+.+.|++.|. .+.... ++.+.++++|
T Consensus 194 glkva~vGD~~n-va~Sli~~~~--~~G~~v~-~~~P~~~~~~~~~~~~a~~~g~~~~~~~~--------d~~eav~~aD 261 (348)
T PLN02342 194 GTKVVYVGDGNN-IVHSWLLLAA--VLPFHFV-CACPKGYEPDAKTVEKARAAGISKIEITN--------DPAEAVKGAD 261 (348)
T ss_pred CCEEEEECCCch-hHHHHHHHHH--HcCCEEE-EECCcccccCHHHHHHHHHhCCCcEEEEc--------CHHHHhCCCC
Confidence 367777764332 3344444332 2345543 3332221123345566666664 232211 2445667899
Q ss_pred EEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCCCCCCCCC
Q 024063 125 FLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG 191 (273)
Q Consensus 125 lvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~ 191 (273)
+|..-.|.... |++++ +.....+..|.+..++++..+..++-+|| ||++||.
T Consensus 262 Vvy~~~W~s~~--~~e~~-----------~~~~~~~~~y~vt~ell~~ak~~aivMHp--LP~~rg~ 313 (348)
T PLN02342 262 VVYTDVWASMG--QKEEA-----------EKRKKAFQGFQVNEALMKLAGPQAYFMHC--LPAERGV 313 (348)
T ss_pred EEEECCccccc--cchhh-----------HHHHHhccCCccCHHHHhccCCCcEEeCC--CCcCCCc
Confidence 99887765421 11211 11223344589999999998888999999 6998874
No 24
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=93.70 E-value=0.46 Score=45.58 Aligned_cols=119 Identities=15% Similarity=0.237 Sum_probs=64.5
Q ss_pred CceEEEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHH----HHcCCCEEEEcCCCCchHHHHHHHhc
Q 024063 46 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFL----ERHGIPYHYLCAKENEREEELLELVQ 121 (273)
Q Consensus 46 ~~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a----~~~gIp~~~~~~~~~~~~~~~~~~l~ 121 (273)
..||+++|-++ ..+..++..+. .++.++. +++.+.-.....+...| +.+|..+.... ++.+.++
T Consensus 154 glkv~~vGD~~-~v~~Sl~~~~~--~~g~~v~-~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~--------d~~eav~ 221 (338)
T PRK02255 154 DCKVVFVGDAT-QVCVSLMFIAT--KMGMDFV-HFGPKGYQLPEEHLAIAEENCEVSGGSVLVTD--------DVDEAVK 221 (338)
T ss_pred CCEEEEECCCc-hHHHHHHHHHH--hCCCEEE-EECCCccccCHHHHHHHHHHHHhcCCeEEEEc--------CHHHHhC
Confidence 36777777543 22333343332 2345543 22322111122344443 34565554322 2345667
Q ss_pred CCCEEEEEeec-CCcchhhHhhhhhhhhhhhcccCccccccc-ccCChhHHhhcCCCeeEeecCCCCCCCCC
Q 024063 122 NTDFLVLARYM-QPVPLQKEAYLGYKLLESLSSKGSLTSYFN-MILSGKFLRSYGKDVINIHHGLLPSFKGG 191 (273)
Q Consensus 122 ~~Dlvv~ag~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~-~il~~~~l~~~~~~~iNiHpslLP~yRG~ 191 (273)
++|+|..-.|. .. +.+ .+.+.++..|+. |.+..++++..+.+++-+|| ||.+||.
T Consensus 222 ~aDvvy~~~w~~~~---~~~----------~~~~~r~~~~~~~y~v~~ell~~a~~~~ivmHp--LP~~Rg~ 278 (338)
T PRK02255 222 DADFVYTDVWYGLY---DAE----------LSEEERMAIFYPKYQVTPELMAKAGPHAKFMHC--LPATRGE 278 (338)
T ss_pred CCCEEEEcccHhhc---cch----------hhHHHHHHhhCCCceECHHHHhccCCCCEEeCC--CCCcCCc
Confidence 89999886654 10 000 011233445565 89999999998888999999 5888873
No 25
>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=92.50 E-value=0.68 Score=43.90 Aligned_cols=118 Identities=15% Similarity=0.099 Sum_probs=71.0
Q ss_pred chhHHHHHHhhh----cCCCCceEEEEeeCCC-CCCCcHHHHHHHHcCC-CEEEEcCCCCch----------HHHHHHHh
Q 024063 57 EHCLVDFLYGWQ----EGKLPVEITCVISNHD-RGPNSHVIRFLERHGI-PYHYLCAKENER----------EEELLELV 120 (273)
Q Consensus 57 g~~l~~ll~~~~----~~~l~~~i~~Vvs~~~-~~~~~~~~~~a~~~gI-p~~~~~~~~~~~----------~~~~~~~l 120 (273)
.|..|+|++.++ .|.+..--++.+.+-. .....+....+...|+ -+..+..+.-.. .+++.+.+
T Consensus 136 ~HPtQaLaDl~Ti~e~~g~l~g~~va~vGD~~~~rv~~Sl~~~~a~~g~~~v~~~~P~~~~p~~~~~~~~~~~~d~~ea~ 215 (310)
T PRK13814 136 QHPSQALIDLMTIKQHKPHWNKLCVTIIGDIRHSRVANSLMDGLVTMGVPEIRLVGPSSLLPDKVGNDSIKKFTELKPSL 215 (310)
T ss_pred CCchHHHHHHHHHHHHhCCcCCcEEEEECCCCCCcHHHHHHHHHHHcCCCEEEEeCCcccCcCccccceEEEEcCHHHHh
Confidence 466777766522 2555433334554321 1112446677888998 566554321111 02334566
Q ss_pred cCCCEEEEEeecCCcchhhHhhhhhhhhhhhcccCccccccc-ccCChhHHhhcCCCeeEeecCCCCCCCCC
Q 024063 121 QNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFN-MILSGKFLRSYGKDVINIHHGLLPSFKGG 191 (273)
Q Consensus 121 ~~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~-~il~~~~l~~~~~~~iNiHpslLP~yRG~ 191 (273)
+++|+|..-+|.. | ..+.+.....|.. |.+..++++..+..++-+|| ||++||.
T Consensus 216 ~~aDvvy~~~~~~------e---------r~~~~~~~~~~~~~y~v~~~~l~~a~~~~i~mHc--LP~~Rg~ 270 (310)
T PRK13814 216 LNSDVIVTLRLQK------E---------RHDNSVDIDAFRGSFRLTPEKLYSAKPDAIVMHP--GPVNREV 270 (310)
T ss_pred CCCCEEEECcccc------c---------cccchhHHHHhCCCcccCHHHHHhcCCCCEEECC--CCCCCCC
Confidence 6899998877753 1 1122234445664 99999999998888999999 5999874
No 26
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=92.17 E-value=0.94 Score=43.33 Aligned_cols=121 Identities=12% Similarity=0.202 Sum_probs=66.4
Q ss_pred CceEEEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHH----HHHHHcCCCEEEEcCCCCchHHHHHHHhc
Q 024063 46 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVI----RFLERHGIPYHYLCAKENEREEELLELVQ 121 (273)
Q Consensus 46 ~~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~----~~a~~~gIp~~~~~~~~~~~~~~~~~~l~ 121 (273)
..||+++|-+.-.....++.++. .++.++. +++.+.-.+...+. +++++.|..+...+ ++.+.++
T Consensus 156 gl~ia~vGD~~~~v~~Sl~~~~~--~~g~~v~-~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~--------d~~~a~~ 224 (334)
T PRK01713 156 EISYVYIGDARNNMGNSLLLIGA--KLGMDVR-ICAPKALLPEASLVEMCEKFAKESGARITVTD--------DIDKAVK 224 (334)
T ss_pred CcEEEEECCCccCHHHHHHHHHH--HcCCEEE-EECCchhcCCHHHHHHHHHHHHHcCCeEEEEc--------CHHHHhC
Confidence 46888887542113344444432 2345654 34433211222232 44555677665432 2445677
Q ss_pred CCCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhc-CCCeeEeecCCCCCCCCC
Q 024063 122 NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSY-GKDVINIHHGLLPSFKGG 191 (273)
Q Consensus 122 ~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~-~~~~iNiHpslLP~yRG~ 191 (273)
++|+|..-.|... ..+.+ +.+..+..+..|.+..++++.. +..++-+|| ||+++|.
T Consensus 225 ~aDvVyt~~w~sm-~~~~~-----------~~~~~~~~~~~y~v~~ell~~a~k~~aivmH~--lP~~~~~ 281 (334)
T PRK01713 225 GVDFVHTDVWVSM-GEPLE-----------TWGERIKLLMPYQVTPELMKRTGNPKVKFMHC--LPAFHNS 281 (334)
T ss_pred CCCEEEEcceeec-ccchh-----------hHHHHHHhccCCcCCHHHHhccCCCCCEEECC--CCCCCCc
Confidence 9999988766431 00000 0112223445588999999976 577999999 5899885
No 27
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=91.98 E-value=1.1 Score=42.77 Aligned_cols=121 Identities=12% Similarity=0.180 Sum_probs=66.3
Q ss_pred CceEEEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHH----HHHHHcCCCEEEEcCCCCchHHHHHHHhc
Q 024063 46 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVI----RFLERHGIPYHYLCAKENEREEELLELVQ 121 (273)
Q Consensus 46 ~~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~----~~a~~~gIp~~~~~~~~~~~~~~~~~~l~ 121 (273)
..||+++|-+....+..++.++. .+++++. +++.+.-.+...+. ++|++.|..+.... ++.+.++
T Consensus 155 g~kia~vGD~~~~v~~Sl~~~~~--~~g~~v~-~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~--------d~~ea~~ 223 (332)
T PRK04284 155 DIKFTYVGDGRNNVANALMQGAA--IMGMDFH-LVCPKELNPDDELLNKCKEIAAETGGKITITD--------DIDEGVK 223 (332)
T ss_pred CcEEEEecCCCcchHHHHHHHHH--HcCCEEE-EECCccccCCHHHHHHHHHHHHHcCCeEEEEc--------CHHHHhC
Confidence 47888887542223344444332 2345554 23322111122233 44556776665432 1345667
Q ss_pred CCCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcC-CCeeEeecCCCCCCCCC
Q 024063 122 NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYG-KDVINIHHGLLPSFKGG 191 (273)
Q Consensus 122 ~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~-~~~iNiHpslLP~yRG~ 191 (273)
++|+|..-.|... + + +-. ..+.....+..|.+..++++..+ ..++-+|| ||++||.
T Consensus 224 ~aDvvy~~~w~~~---~---~-~~~-----~~~~~~~~~~~y~v~~e~l~~a~~~~~ivmHp--lP~~r~~ 280 (332)
T PRK04284 224 GSDVIYTDVWVSM---G---E-PDE-----VWEERIKLLKPYQVNKEMMKKTGNPNAIFEHC--LPSFHDL 280 (332)
T ss_pred CCCEEEECCcccC---c---c-chh-----hHHHHHHhccCCcCCHHHHhhcCCCCcEEECC--CCCCCCc
Confidence 8999988776541 0 0 000 01122345566899999999875 37999999 5999875
No 28
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=91.86 E-value=1.5 Score=39.80 Aligned_cols=79 Identities=24% Similarity=0.264 Sum_probs=51.2
Q ss_pred ceEEEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCC--------CcH-HHHHHHHcCCCEEEEcCCC-Cc-hHHH
Q 024063 47 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGP--------NSH-VIRFLERHGIPYHYLCAKE-NE-REEE 115 (273)
Q Consensus 47 ~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~--------~~~-~~~~a~~~gIp~~~~~~~~-~~-~~~~ 115 (273)
+|++.|.||+--..-++..+++.| ++|.++++-.+... |.. +...|+..|||+..+..+. .. .-++
T Consensus 1 mk~~aL~SGGKDS~~Al~~a~~~G---~eV~~Ll~~~p~~~dS~m~H~~n~~~~~~~Ae~~gi~l~~~~~~g~~e~eve~ 77 (223)
T COG2102 1 MKVIALYSGGKDSFYALYLALEEG---HEVVYLLTVKPENGDSYMFHTPNLELAELQAEAMGIPLVTFDTSGEEEREVEE 77 (223)
T ss_pred CcEEEEEecCcHHHHHHHHHHHcC---CeeEEEEEEecCCCCeeeeeccchHHHHHHHHhcCCceEEEecCccchhhHHH
Confidence 578889998754455677777775 78887776554333 222 4567888999998877432 11 1245
Q ss_pred HHHHhc--CCCEEEE
Q 024063 116 LLELVQ--NTDFLVL 128 (273)
Q Consensus 116 ~~~~l~--~~Dlvv~ 128 (273)
+.+.++ ++|.|+.
T Consensus 78 L~~~l~~l~~d~iv~ 92 (223)
T COG2102 78 LKEALRRLKVDGIVA 92 (223)
T ss_pred HHHHHHhCcccEEEE
Confidence 666665 6778764
No 29
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=91.34 E-value=1.2 Score=41.97 Aligned_cols=74 Identities=16% Similarity=0.273 Sum_probs=46.5
Q ss_pred HHHcCCCEEEEcCCCCchHHHHHHHhcCCCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcC
Q 024063 95 LERHGIPYHYLCAKENEREEELLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYG 174 (273)
Q Consensus 95 a~~~gIp~~~~~~~~~~~~~~~~~~l~~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~ 174 (273)
+++.|..+.... ++.+.++++|+|..-.|... +.+ + ..+..+.-+..|.+..+.++..+
T Consensus 198 ~~~~g~~~~~~~--------d~~~a~~~aDvvy~~~w~~~---~~~--------~--~~~~~~~~~~~y~v~~~~l~~~~ 256 (304)
T PRK00779 198 AKETGASIEVTH--------DPKEAVKGADVVYTDVWVSM---GQE--------A--EAEERLKAFAPYQVNEELMALAK 256 (304)
T ss_pred HHHcCCeEEEEc--------CHHHHhCCCCEEEecCcccc---ccc--------h--hHHHHHHHhcccCCCHHHHHhcC
Confidence 555665554322 24456678999988776541 000 0 01122344556899999999888
Q ss_pred CCeeEeecCCCCCCCCC
Q 024063 175 KDVINIHHGLLPSFKGG 191 (273)
Q Consensus 175 ~~~iNiHpslLP~yRG~ 191 (273)
.+++-+|| ||.+||.
T Consensus 257 ~~~ivmHp--lP~~R~~ 271 (304)
T PRK00779 257 PDAIFMHC--LPAHRGE 271 (304)
T ss_pred CCeEEecC--CCccCCC
Confidence 88999997 4888764
No 30
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=90.58 E-value=1.9 Score=40.70 Aligned_cols=117 Identities=18% Similarity=0.168 Sum_probs=66.8
Q ss_pred CceEEEEEECC-chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCCC
Q 024063 46 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 124 (273)
Q Consensus 46 ~~kiav~~Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~D 124 (273)
..||+++|-+. +..+..++.++.. ++.++. +++.+.-.....+.+.|+++|..+...+ ++.+.++++|
T Consensus 150 g~~va~vGD~~~~~v~~Sl~~~~a~--~g~~v~-~~~P~~~~~~~~~~~~~~~~G~~v~~~~--------d~~~a~~~aD 218 (301)
T TIGR00670 150 GLKIALVGDLKYGRTVHSLAEALTR--FGVEVY-LISPEELRMPKEILEELKAKGIKVRETE--------SLEEVIDEAD 218 (301)
T ss_pred CCEEEEEccCCCCcHHHHHHHHHHH--cCCEEE-EECCccccCCHHHHHHHHHcCCEEEEEC--------CHHHHhCCCC
Confidence 47888888653 2234444444322 345543 3333211123456677777787765433 2445667999
Q ss_pred EEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCCCCCCCCC
Q 024063 125 FLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG 191 (273)
Q Consensus 125 lvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~ 191 (273)
+|..-+|. +|++-+ .......+..|-+..++++..+.+++-+||.+ ||.
T Consensus 219 vvyt~~~~------~er~~~--------~~~~~~~~~~y~v~~ell~~a~~~ai~mHclP----Rg~ 267 (301)
T TIGR00670 219 VLYVTRIQ------KERFPD--------PEEYEKYKGSYGITLERLEAAKKGVIIMHPLP----RVD 267 (301)
T ss_pred EEEECCcc------ccccCC--------HHHHHHHhcCCeECHHHHhhcCCCCEEECCCC----CCc
Confidence 99876552 121110 11122233468899999999888899999964 764
No 31
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=90.37 E-value=2.4 Score=39.96 Aligned_cols=60 Identities=17% Similarity=0.278 Sum_probs=39.5
Q ss_pred HHHHhcCCCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCCCCCCCC
Q 024063 116 LLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKG 190 (273)
Q Consensus 116 ~~~~l~~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG 190 (273)
+.+.++++|+|..-.|... +.+ . ..+.....+-+|.+..+.++..+.+++-+||. |..||
T Consensus 210 ~~~a~~~aDvvy~~~w~~~---~~~---------~-~~~~~~~~~~~y~l~~~~l~~~~~~~ivmHpl--P~~rg 269 (304)
T TIGR00658 210 PVEAVKGADVIYTDVWVSM---GEE---------D-KKEERLKLFRPYQVNEELMELAKPEVIFMHCL--PAHRG 269 (304)
T ss_pred HHHHhCCCCEEEEcCcccC---ccc---------c-ccHHHHHHhcCCcCCHHHHhhcCCCCEEECCC--CCCCC
Confidence 3455668999987655431 000 0 11122334556899999999998899999995 88886
No 32
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=90.19 E-value=1.8 Score=41.51 Aligned_cols=121 Identities=12% Similarity=0.149 Sum_probs=66.1
Q ss_pred CceEEEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHH----HHHHHHcCCCEEEEcCCCCchHHHHHHHhc
Q 024063 46 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHV----IRFLERHGIPYHYLCAKENEREEELLELVQ 121 (273)
Q Consensus 46 ~~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~----~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~ 121 (273)
..||+++|-+.......++.++. .++.++. +++.+.-.+...+ .+.++++|..+...+ ++.+.++
T Consensus 156 g~~ia~vGD~~~~v~~Sl~~~~~--~~g~~v~-~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~--------d~~ea~~ 224 (336)
T PRK03515 156 EMTLAYAGDARNNMGNSLLEAAA--LTGLDLR-LVAPKACWPEAALVTECRALAQKNGGNITLTE--------DIAEGVK 224 (336)
T ss_pred CCEEEEeCCCcCcHHHHHHHHHH--HcCCEEE-EECCchhcCcHHHHHHHHHHHHHcCCeEEEEc--------CHHHHhC
Confidence 47888877541113344444432 1345543 2332211112222 244556776655432 2445667
Q ss_pred CCCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhc-CCCeeEeecCCCCCCCCC
Q 024063 122 NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSY-GKDVINIHHGLLPSFKGG 191 (273)
Q Consensus 122 ~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~-~~~~iNiHpslLP~yRG~ 191 (273)
++|+|..-.|...= .+. + ..+.++..+..|.+..++++.. +.+++-+|| ||+++|.
T Consensus 225 ~aDvvytd~W~sm~---------~~~-~--~~~er~~~~~~y~v~~~lm~~a~k~~~ivmHc--LP~~~~~ 281 (336)
T PRK03515 225 GADFIYTDVWVSMG---------EPK-E--VWAERIALLRPYQVNSKMMQLTGNPQVKFLHC--LPAFHDD 281 (336)
T ss_pred CCCEEEecCcccCc---------chh-H--HHHHHHHhccCCccCHHHHhcccCCCCEEECC--CCCCCCc
Confidence 89999887766410 000 0 0112234455789999999974 667999999 5899885
No 33
>PLN02527 aspartate carbamoyltransferase
Probab=89.74 E-value=2.8 Score=39.62 Aligned_cols=117 Identities=16% Similarity=0.229 Sum_probs=63.3
Q ss_pred CceEEEEEEC-CchhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCCC
Q 024063 46 KYKVAVLASK-QEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 124 (273)
Q Consensus 46 ~~kiav~~Sg-~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~D 124 (273)
..||+++|-+ ++-....++.++.. -.+.++. +++.+.-.....+.+.+++.|..+...+ ++.+.++++|
T Consensus 151 g~kva~vGD~~~~rv~~Sl~~~~~~-~~g~~v~-~~~P~~~~~~~~~~~~~~~~g~~~~~~~--------d~~~a~~~aD 220 (306)
T PLN02527 151 GIKVGLVGDLANGRTVRSLAYLLAK-YEDVKIY-FVAPDVVKMKDDIKDYLTSKGVEWEESS--------DLMEVASKCD 220 (306)
T ss_pred CCEEEEECCCCCChhHHHHHHHHHh-cCCCEEE-EECCCccCCCHHHHHHHHHcCCEEEEEc--------CHHHHhCCCC
Confidence 3788888854 32234444443221 0124443 2332211123445666777776665432 2345677999
Q ss_pred EEEEEeecCCcchhhHhhhhhhhhhhhcccCccc-ccccccCChhHHhhcCCCeeEeecCCCCCCCC
Q 024063 125 FLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLT-SYFNMILSGKFLRSYGKDVINIHHGLLPSFKG 190 (273)
Q Consensus 125 lvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG 190 (273)
+|..-+ ++ ++++-+ ....+. .+-.|.+..++++..+.+++-+||. | ||
T Consensus 221 vvyt~~-~q-----~e~~~~--------~~~~~~~~~~~y~v~~~ll~~a~~~~ivmHcl--P--Rg 269 (306)
T PLN02527 221 VLYQTR-IQ-----RERFGE--------RIDLYEAARGKYIVDKKVMDVLPKHAVVMHPL--P--RL 269 (306)
T ss_pred EEEECC-cc-----hhhhcc--------hHHHHHHhCCCceECHHHHhccCCCCEEECCC--C--Cc
Confidence 998743 22 232211 001111 2245899999999888889999996 5 77
No 34
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=89.46 E-value=3.1 Score=39.91 Aligned_cols=118 Identities=18% Similarity=0.182 Sum_probs=61.7
Q ss_pred CceEEEEEECC-chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCCC
Q 024063 46 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 124 (273)
Q Consensus 46 ~~kiav~~Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~D 124 (273)
..||+++|-+. +-.+..++.... ..++.++. +++.+.=..+..+.+.++++|..+.... .+.+.++++|
T Consensus 159 g~kia~vGD~~~~rv~~Sl~~~l~-~~~g~~v~-~~~P~~~~~~~~~~~~~~~~g~~~~~~~--------d~~ea~~~aD 228 (338)
T PRK08192 159 GMHIAMVGDLKFGRTVHSLSRLLC-MYKNVSFT-LVSPKELAMPDYVISDIENAGHKITITD--------QLEGNLDKAD 228 (338)
T ss_pred CCEEEEECcCCCCchHHHHHHHHH-HhcCCEEE-EECCccccCCHHHHHHHHHcCCeEEEEc--------CHHHHHccCC
Confidence 37888888653 212222332211 01124443 3332211123455666777776655432 2345667899
Q ss_pred EEEEEeecCCcchhhHhhhhhhhhhhhcccCccccc-ccccCChhHHh-hcCCCeeEeecCCCCCCCC
Q 024063 125 FLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSY-FNMILSGKFLR-SYGKDVINIHHGLLPSFKG 190 (273)
Q Consensus 125 lvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y-~~~il~~~~l~-~~~~~~iNiHpslLP~yRG 190 (273)
+|..-+ + |+++|- .+.....| -+|.+..++++ ..+..++-+|| ||++||
T Consensus 229 vvyt~~-~-----q~e~~~---------~~~~~~~~~~~y~v~~e~l~~~a~~~ai~mHc--LP~~~~ 279 (338)
T PRK08192 229 ILYLTR-I-----QEERFP---------SQEEANKYRGKFRLNQSIYTQHCKSNTVIMHP--LPRDSR 279 (338)
T ss_pred EEEEcC-c-----cccccc---------chHHHHHhhhccccCHHHHHhhhCCCCEEECC--CCCCCC
Confidence 997743 2 223221 11122333 34889999994 46777999999 588865
No 35
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=89.22 E-value=0.79 Score=44.03 Aligned_cols=52 Identities=13% Similarity=0.247 Sum_probs=33.5
Q ss_pred CCceEEEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEE
Q 024063 45 PKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYH 103 (273)
Q Consensus 45 ~~~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~ 103 (273)
++.||+|+|++-|.. .+.++.+-.-.+++++|++.. .....++|+++|||.+
T Consensus 2 ~~~rVgViG~~~G~~---h~~al~~~~~~~eLvaV~d~~----~erA~~~A~~~gi~~y 53 (343)
T TIGR01761 2 DVQSVVVCGTRFGQF---YLAAFAAAPERFELAGILAQG----SERSRALAHRLGVPLY 53 (343)
T ss_pred CCcEEEEEeHHHHHH---HHHHHHhCCCCcEEEEEEcCC----HHHHHHHHHHhCCCcc
Confidence 568999999954432 222222211148999888754 2346789999999954
No 36
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=89.01 E-value=2.8 Score=40.12 Aligned_cols=116 Identities=14% Similarity=0.193 Sum_probs=60.1
Q ss_pred CceEEEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHH----HHHHHcCCCEEEEcCCCCchHHHHHHHhc
Q 024063 46 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVI----RFLERHGIPYHYLCAKENEREEELLELVQ 121 (273)
Q Consensus 46 ~~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~----~~a~~~gIp~~~~~~~~~~~~~~~~~~l~ 121 (273)
..||+++|-+....+..++..+. .++.++. +++.+.-.....+. +.|++.|..+...+ ++.+.++
T Consensus 155 g~~va~vGd~~~~v~~Sl~~~~~--~~g~~v~-~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~--------d~~ea~~ 223 (331)
T PRK02102 155 GLKLAYVGDGRNNMANSLMVGGA--KLGMDVR-ICAPKELWPEEELVALAREIAKETGAKITITE--------DPEEAVK 223 (331)
T ss_pred CCEEEEECCCcccHHHHHHHHHH--HcCCEEE-EECCcccccCHHHHHHHHHHHHHcCCeEEEEc--------CHHHHhC
Confidence 46777776542123344444332 2234443 23222111122232 34455676554432 2345667
Q ss_pred CCCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHh-hcCCCeeEeecCCCCC
Q 024063 122 NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLR-SYGKDVINIHHGLLPS 187 (273)
Q Consensus 122 ~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~-~~~~~~iNiHpslLP~ 187 (273)
++|+|..-.|... . ...+++.....+-.|.+..++++ ..+..++-+||. |+
T Consensus 224 ~aDvvyt~~w~~~-~------------~~~~~~~~~~~~~~y~vt~ell~~~~~~d~ivmH~l--P~ 275 (331)
T PRK02102 224 GADVIYTDVWVSM-G------------EEDEWEERIKLLKPYQVNMDLMKATGNPDVIFMHCL--PA 275 (331)
T ss_pred CCCEEEEcCcccC-c------------cccchHHHHHhccCCcCCHHHHhhhcCCCCEEECCC--CC
Confidence 8999987665431 0 00011122334456899999998 467789999995 66
No 37
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=88.50 E-value=0.7 Score=34.36 Aligned_cols=30 Identities=3% Similarity=-0.035 Sum_probs=26.0
Q ss_pred CeeEEEEEEcCCCCCChHhHHHHHHHHHHHhc
Q 024063 1 MIKMCIEFIFDPIKWPREQMDEDFFKLSKMFN 32 (273)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~l~~~f~~l~~~~~ 32 (273)
+|+||++|+.+ ..+.++|+++|.+++.+++
T Consensus 40 ~F~m~~~~~~~--~~~~~~l~~~l~~~~~~~~ 69 (77)
T cd04893 40 EFALTMLVEGS--WDAIAKLEAALPGLARRLD 69 (77)
T ss_pred EEEEEEEEEec--cccHHHHHHHHHHHHHHcC
Confidence 48999999987 3578999999999999873
No 38
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=88.43 E-value=3.4 Score=39.00 Aligned_cols=117 Identities=15% Similarity=0.251 Sum_probs=62.6
Q ss_pred CceEEEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHH----HHHHHcCCCEEEEcCCCCchHHHHHHHhc
Q 024063 46 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVI----RFLERHGIPYHYLCAKENEREEELLELVQ 121 (273)
Q Consensus 46 ~~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~----~~a~~~gIp~~~~~~~~~~~~~~~~~~l~ 121 (273)
..||+++|-++. .+..++.++. .++.++. +++.+.-.+...+. ++++++|..+...+. . +.++
T Consensus 147 g~kva~vGD~~~-v~~S~~~~~~--~~g~~v~-~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d--------~-~a~~ 213 (302)
T PRK14805 147 KVKLAYVGDGNN-VTHSLMYGAA--ILGATMT-VICPPGHFPDGQIVAEAQELAAKSGGKLVLTSD--------I-EAIE 213 (302)
T ss_pred CcEEEEEcCCCc-cHHHHHHHHH--HcCCEEE-EECCchhcCCHHHHHHHHHHHHHcCCEEEEEcC--------H-HHHC
Confidence 378888875431 2233443332 2345543 33322111222333 345556766554321 1 2466
Q ss_pred CCCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCCCCCCCCC
Q 024063 122 NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG 191 (273)
Q Consensus 122 ~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~ 191 (273)
++|+|..-.|.+. ...-+.+.....+..|.+..+.++..+.. +-+|| ||.+||.
T Consensus 214 ~aDvvy~~~w~~~-------------~~~~~~~~~~~~~~~y~vt~~~l~~a~~~-~vmH~--lP~~Rg~ 267 (302)
T PRK14805 214 GHDAIYTDTWISM-------------GDDTPLAEIKAKFAPYQVNKALMEKAGAT-FVMHC--QPAHRGV 267 (302)
T ss_pred CCCEEEeeceEeC-------------CCccccHHHHHhccCCcCCHHHHhcCCCC-eEECC--CCCCCCC
Confidence 8999988666541 00001122233445589999999987766 88999 5888874
No 39
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=87.99 E-value=5.4 Score=38.19 Aligned_cols=75 Identities=9% Similarity=0.098 Sum_probs=44.4
Q ss_pred HHHHcCCCEEEEcCCCCchHHHHHHHhcCCCEEEEEeecCCcchhhHhhhhhhhhhhhccc-CcccccccccCChhHHhh
Q 024063 94 FLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSK-GSLTSYFNMILSGKFLRS 172 (273)
Q Consensus 94 ~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~-~~~~~y~~~il~~~~l~~ 172 (273)
+|+++|..+.... .+.+.++++|+|..-.|... ++. ...+.. .....+..|.+..++++.
T Consensus 224 ~~~~~g~~~~~~~--------d~~ea~~~aDvvy~~~w~~~------~~~-----~~~~~~~~~~~~~~~y~v~~~ll~~ 284 (335)
T PRK04523 224 NAAESGGSLTVSH--------DIDSAYAGADVVYAKSWGAL------PFF-----GNWEPEKPIRDQYQHFIVDERKMAL 284 (335)
T ss_pred HHHHcCCeEEEEc--------CHHHHhCCCCEEEeceeecc------ccC-----CcccccHHHHHhCcCCcCCHHHHhC
Confidence 4455666554432 23455668999998887641 000 000000 111334458999999987
Q ss_pred cCCCeeEeecCCCCCCCC
Q 024063 173 YGKDVINIHHGLLPSFKG 190 (273)
Q Consensus 173 ~~~~~iNiHpslLP~yRG 190 (273)
.+ .++-+|| ||.+||
T Consensus 285 a~-~~i~mHc--LP~~Rg 299 (335)
T PRK04523 285 TN-NGVFSHC--LPLRRN 299 (335)
T ss_pred CC-CCEEECC--CCCCCC
Confidence 65 6889999 488886
No 40
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=87.72 E-value=5.6 Score=39.53 Aligned_cols=116 Identities=12% Similarity=0.114 Sum_probs=64.4
Q ss_pred CceEEEEEECC-chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCCC
Q 024063 46 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 124 (273)
Q Consensus 46 ~~kiav~~Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~D 124 (273)
..||+++|-+. +..+..++..+.. .++.++. +++.+.-.....+.+.++++|..+...+ ++.+.++++|
T Consensus 241 G~kIa~vGD~~~~rv~~Sl~~~la~-~~G~~v~-l~~P~~~~~~~~~~~~~~~~G~~v~~~~--------d~~eav~~AD 310 (429)
T PRK11891 241 GAHIALVGDLKYGRTVHSLVKLLAL-YRGLKFT-LVSPPTLEMPAYIVEQISRNGHVIEQTD--------DLAAGLRGAD 310 (429)
T ss_pred CCEEEEECcCCCChHHHHHHHHHHH-hcCCEEE-EECCCccccCHHHHHHHHhcCCeEEEEc--------CHHHHhCCCC
Confidence 47888888653 2223344433211 1124543 2333221123455667777776655432 2445677999
Q ss_pred EEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhh-cCCCeeEeecCCCCCC
Q 024063 125 FLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRS-YGKDVINIHHGLLPSF 188 (273)
Q Consensus 125 lvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~-~~~~~iNiHpslLP~y 188 (273)
+|..-++ |+|++-+ ......+.+|.+..++++. .+..++-+||. |+.
T Consensus 311 VVYt~~~------q~er~~~---------~~~~~~~~~y~vt~ell~~~ak~dai~MHcL--Pr~ 358 (429)
T PRK11891 311 VVYATRI------QKERFAD---------ESFEGYTPDFQINQALVDAVCKPDTLIMHPL--PRD 358 (429)
T ss_pred EEEEcCc------hhhcccC---------HHHHHhccCCcCCHHHHhCccCCCcEEECCC--CCC
Confidence 9987542 2222111 1112345569999999998 78889999995 644
No 41
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=87.42 E-value=4.4 Score=36.72 Aligned_cols=77 Identities=22% Similarity=0.260 Sum_probs=46.7
Q ss_pred ceEEEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCC--------C-cHHHHHHHHcCCCEEEEcCCC--CchHHH
Q 024063 47 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGP--------N-SHVIRFLERHGIPYHYLCAKE--NEREEE 115 (273)
Q Consensus 47 ~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~--------~-~~~~~~a~~~gIp~~~~~~~~--~~~~~~ 115 (273)
||++++.||+--+.-+++.+.++ ++|++++|-.+... + .-+...|+..|||.+.+.... ....++
T Consensus 1 Mk~~~l~SGGKDS~~al~~a~~~----~~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~~~~~e~~~e~ 76 (223)
T TIGR00290 1 MKVAALISGGKDSCLALYHALKE----HEVISLVNIMPENEESYMFHGVNAHLTDLQAESIGIPLIKLYTEGTEEDEVEE 76 (223)
T ss_pred CcEEEEecCcHHHHHHHHHHHHh----CeeEEEEEEecCCCCcccccccCHHHHHHHHHHcCCCeEEeecCCCccHHHHH
Confidence 57888888875555667766554 46777766443321 1 225678899999987654221 112345
Q ss_pred HHHHhc--CCCEEE
Q 024063 116 LLELVQ--NTDFLV 127 (273)
Q Consensus 116 ~~~~l~--~~Dlvv 127 (273)
+.+.++ ++|.++
T Consensus 77 l~~~l~~~gv~~vv 90 (223)
T TIGR00290 77 LKGILHTLDVEAVV 90 (223)
T ss_pred HHHHHHHcCCCEEE
Confidence 666665 677775
No 42
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=87.06 E-value=5.9 Score=35.87 Aligned_cols=77 Identities=22% Similarity=0.264 Sum_probs=46.3
Q ss_pred ceEEEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCC--------C-cHHHHHHHHcCCCEEEEcCCC--CchHHH
Q 024063 47 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGP--------N-SHVIRFLERHGIPYHYLCAKE--NEREEE 115 (273)
Q Consensus 47 ~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~--------~-~~~~~~a~~~gIp~~~~~~~~--~~~~~~ 115 (273)
||++++.||+--+.-+++.+.+. ++|+++++..+... + .-+...|+..|||++.+.... ...-++
T Consensus 1 Mkv~vl~SGGKDS~lAl~~~~~~----~~V~~L~~~~~~~~~s~~~h~~~~~~~~~qA~algiPl~~~~~~~~~e~~~~~ 76 (222)
T TIGR00289 1 MKVAVLYSGGKDSILALYKALEE----HEVISLVGVFSENEESYMFHSPNLHLTDLVAEAVGIPLIKLYTSGEEEKEVED 76 (222)
T ss_pred CeEEEEecCcHHHHHHHHHHHHc----CeeEEEEEEcCCCCCccccccCCHHHHHHHHHHcCCCeEEEEcCCchhHHHHH
Confidence 58899999875444455555443 47777777554321 1 235678899999987665321 111234
Q ss_pred HHHHhc--CCCEEE
Q 024063 116 LLELVQ--NTDFLV 127 (273)
Q Consensus 116 ~~~~l~--~~Dlvv 127 (273)
+.+.++ +++-++
T Consensus 77 l~~~l~~~gv~~vv 90 (222)
T TIGR00289 77 LAGQLGELDVEALC 90 (222)
T ss_pred HHHHHHHcCCCEEE
Confidence 555554 677775
No 43
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=86.94 E-value=2.8 Score=37.77 Aligned_cols=77 Identities=19% Similarity=0.277 Sum_probs=42.3
Q ss_pred ceEEEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCCC---------cHHHHHHHHcCCCEEEEcCC--CCchHHH
Q 024063 47 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPN---------SHVIRFLERHGIPYHYLCAK--ENEREEE 115 (273)
Q Consensus 47 ~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~---------~~~~~~a~~~gIp~~~~~~~--~~~~~~~ 115 (273)
||++++-||+--+.-+|..+.++ ++|++++|-.+...+ .-+...|+..|||...+..+ .....++
T Consensus 1 Mk~v~l~SGGKDS~lAl~~a~~~----~~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~~g~~~~~~~~ 76 (218)
T PF01902_consen 1 MKVVALWSGGKDSCLALYRALRQ----HEVVCLLTMVPEEEDSYMFHGVNIELIEAQAEALGIPLIEIPTSGDEEDYVED 76 (218)
T ss_dssp -EEEEE--SSHHHHHHHHHHHHT-----EEEEEEEEEESTTT-SSS-STTGTCHHHHHHHHT--EEEEEE---CCCHHHH
T ss_pred CcEEEEEcCcHHHHHHHHHHHHh----CCccEEEEeccCCCCcccccccCHHHHHHHHHHCCCCEEEEEccCccchhhHH
Confidence 68999999875444556666554 677777664322211 22677889999999877633 1122356
Q ss_pred HHHHhc--CCCEEE
Q 024063 116 LLELVQ--NTDFLV 127 (273)
Q Consensus 116 ~~~~l~--~~Dlvv 127 (273)
+.+.++ +++.++
T Consensus 77 l~~~l~~~~v~~vv 90 (218)
T PF01902_consen 77 LKEALKELKVEAVV 90 (218)
T ss_dssp HHHHHCTC--SEEE
T ss_pred HHHHHHHcCCCEEE
Confidence 777776 667665
No 44
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=86.86 E-value=4.7 Score=41.04 Aligned_cols=123 Identities=16% Similarity=0.184 Sum_probs=64.3
Q ss_pred CceEEEEEECC-chhHHHHHHhhhcCCCC-ceEEEEeeCCCCC-CCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcC
Q 024063 46 KYKVAVLASKQ-EHCLVDFLYGWQEGKLP-VEITCVISNHDRG-PNSHVIRFLERHGIPYHYLCAKENEREEELLELVQN 122 (273)
Q Consensus 46 ~~kiav~~Sg~-g~~l~~ll~~~~~~~l~-~~i~~Vvs~~~~~-~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~ 122 (273)
..|||++|-.. +..+..++.++.. ++ .++. ++.++.- ....+.+.|+++|..+.... ++.+.+++
T Consensus 174 glkVa~vGD~~~~rva~Sl~~~l~~--~g~~~v~--l~~P~~~~~p~~~~~~a~~~G~~v~i~~--------d~~eav~~ 241 (525)
T PRK13376 174 FIHIALVGDLLHGRTVHSKVNGLKI--FKNVKVD--LIAPEELAMPEHYVEKMKKNGFEVRIFS--------SIEEYLSQ 241 (525)
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHh--cCCcEEE--EECCccccCCHHHHHHHHHcCCeEEEEc--------CHHHHhcc
Confidence 47888888653 2222333333221 22 4443 3333221 23456677777887665433 24456678
Q ss_pred CCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCCCCCCCCC
Q 024063 123 TDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG 191 (273)
Q Consensus 123 ~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~ 191 (273)
+|+. =.-|+- ..|+|++=+ ....+. ...+..|.+..++++..+.+++-+|| ||++||.
T Consensus 242 AD~t-dvw~~~--RiQ~Ermg~-~~~~~~-----~~~~~~y~vt~elm~~ak~~ai~MHc--LPa~Rg~ 299 (525)
T PRK13376 242 KDVA-KIWYFT--RLQLERMGE-DILEKE-----HILRKAVTFRKEFLDKLPEGVKFYHP--LPRHKVY 299 (525)
T ss_pred CCcc-ceEEEe--ccccccCCC-ccchhH-----HHHhcCcEECHHHHhccCCCCEEECC--CCCCCCC
Confidence 8831 001111 123333211 000000 01224689999999988888999999 5999994
No 45
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=86.80 E-value=1.3 Score=34.64 Aligned_cols=68 Identities=22% Similarity=0.297 Sum_probs=42.4
Q ss_pred ceEEEEEECCch--hHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhc--C
Q 024063 47 YKVAVLASKQEH--CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ--N 122 (273)
Q Consensus 47 ~kiav~~Sg~g~--~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~--~ 122 (273)
+||+++|.|... .+.++... ....++++|+... .....++++++|+|.+ .+ +.+++. +
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~----~~~~~v~~v~d~~----~~~~~~~~~~~~~~~~--~~--------~~~ll~~~~ 62 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRS----SPDFEVVAVCDPD----PERAEAFAEKYGIPVY--TD--------LEELLADED 62 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHT----TTTEEEEEEECSS----HHHHHHHHHHTTSEEE--SS--------HHHHHHHTT
T ss_pred CEEEEECCcHHHHHHHHHHHhc----CCCcEEEEEEeCC----HHHHHHHHHHhcccch--hH--------HHHHHHhhc
Confidence 489999987532 23344432 2247888877654 2346677899999944 21 233444 7
Q ss_pred CCEEEEEeec
Q 024063 123 TDFLVLARYM 132 (273)
Q Consensus 123 ~Dlvv~ag~~ 132 (273)
+|+|+++.-.
T Consensus 63 ~D~V~I~tp~ 72 (120)
T PF01408_consen 63 VDAVIIATPP 72 (120)
T ss_dssp ESEEEEESSG
T ss_pred CCEEEEecCC
Confidence 9999988743
No 46
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=86.38 E-value=1.6 Score=31.83 Aligned_cols=31 Identities=23% Similarity=0.413 Sum_probs=26.9
Q ss_pred CeeEEEEEEcCCCCCChHhHHHHHHHHHHHh
Q 024063 1 MIKMCIEFIFDPIKWPREQMDEDFFKLSKMF 31 (273)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~l~~~f~~l~~~~ 31 (273)
+|+|++++++|....+.++|+++|..++.++
T Consensus 40 ~f~~~~~~~~~~~~~~~~~l~~~l~~l~~~l 70 (74)
T cd04875 40 RFFMRVEFELEGFDLSREALEAAFAPVAAEF 70 (74)
T ss_pred eEEEEEEEEeCCCCCCHHHHHHHHHHHHHHc
Confidence 4789999999864577999999999999877
No 47
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=85.70 E-value=4.4 Score=38.39 Aligned_cols=72 Identities=21% Similarity=0.267 Sum_probs=45.5
Q ss_pred CCceEEEEEECC-chh-HHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHH--h
Q 024063 45 PKYKVAVLASKQ-EHC-LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLEL--V 120 (273)
Q Consensus 45 ~~~kiav~~Sg~-g~~-l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~--l 120 (273)
.+.||||+|+|. |+. +..+++ .+ ..++++|+... .++..+++|+++|+|+.+-+ -+++++. +
T Consensus 3 ~klrVAIIGtG~IGt~hm~~l~~---~~--~velvAVvdid---~es~gla~A~~~Gi~~~~~~------ie~LL~~~~~ 68 (302)
T PRK08300 3 SKLKVAIIGSGNIGTDLMIKILR---SE--HLEPGAMVGID---PESDGLARARRLGVATSAEG------IDGLLAMPEF 68 (302)
T ss_pred CCCeEEEEcCcHHHHHHHHHHhc---CC--CcEEEEEEeCC---hhhHHHHHHHHcCCCcccCC------HHHHHhCcCC
Confidence 458999999987 554 333432 12 47898887654 23446788999999986411 2344442 1
Q ss_pred cCCCEEEEEe
Q 024063 121 QNTDFLVLAR 130 (273)
Q Consensus 121 ~~~Dlvv~ag 130 (273)
.+.|+|+.+.
T Consensus 69 ~dIDiVf~AT 78 (302)
T PRK08300 69 DDIDIVFDAT 78 (302)
T ss_pred CCCCEEEECC
Confidence 3678888765
No 48
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=85.14 E-value=17 Score=35.23 Aligned_cols=131 Identities=11% Similarity=0.093 Sum_probs=68.6
Q ss_pred CceEEEEEECC-----ch-hHHHHHHhhhcCCCCceEEEEeeCCCC-CCCcHHHH----HHHHcCCCEEEEcCCCCchHH
Q 024063 46 KYKVAVLASKQ-----EH-CLVDFLYGWQEGKLPVEITCVISNHDR-GPNSHVIR----FLERHGIPYHYLCAKENEREE 114 (273)
Q Consensus 46 ~~kiav~~Sg~-----g~-~l~~ll~~~~~~~l~~~i~~Vvs~~~~-~~~~~~~~----~a~~~gIp~~~~~~~~~~~~~ 114 (273)
..||++.+-+. +. ....++..+. .++.++ +++.+.. .....+.+ +|+++|..+...+
T Consensus 170 g~kvai~~~~d~~~gr~~~v~~Sl~~~~~--~~G~~v--~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~-------- 237 (357)
T TIGR03316 170 GKKFAMTWAYSPSYGKPLSVPQGIIGLMT--RFGMDV--TLAHPEGYHLLPEVIEVAKKNAAENGGKFNIVN-------- 237 (357)
T ss_pred CCEEEEEeccccccCccchHHHHHHHHHH--HcCCEE--EEECCCcccCCHHHHHHHHHHHHHcCCeEEEEc--------
Confidence 36888775322 22 1233444332 234554 3333322 12333443 4567887665433
Q ss_pred HHHHHhcCCCEEEEEeecCCcc----hhhH---hhhhhhhhhhhcccCcccccccccCChhHHhhcC-CCeeEeecCCCC
Q 024063 115 ELLELVQNTDFLVLARYMQPVP----LQKE---AYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYG-KDVINIHHGLLP 186 (273)
Q Consensus 115 ~~~~~l~~~Dlvv~ag~~~~~p----~~~~---~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~-~~~iNiHpslLP 186 (273)
++.+.++++|+|..-.|..+-. .+.. .....+.++..- ......+.+|.+..+.++..+ ..++-+|| ||
T Consensus 238 d~~ea~~~aDvvyt~~w~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~y~vt~e~l~~a~~~~~i~MHc--LP 314 (357)
T TIGR03316 238 SMDEAFKDADIVYPKSWAPIAAMEKRTELYTGSDTEGAELLEQEL-LSQNKKHKDWVCTEERMALTHDGEALYMHC--LP 314 (357)
T ss_pred CHHHHhCCCCEEEECCeeccccccccchhcccchhhhhhhhhccc-hhHHHHhcCCeECHHHHHhcCCCCcEEECC--CC
Confidence 2445677999999887764100 0000 000001110000 011235567899999999987 67999999 58
Q ss_pred CC-CCC
Q 024063 187 SF-KGG 191 (273)
Q Consensus 187 ~y-RG~ 191 (273)
++ ||.
T Consensus 315 ~~~Rg~ 320 (357)
T TIGR03316 315 ADIRGV 320 (357)
T ss_pred CCccCc
Confidence 88 884
No 49
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=84.06 E-value=2.2 Score=31.17 Aligned_cols=31 Identities=13% Similarity=0.177 Sum_probs=27.0
Q ss_pred CeeEEEEEEcCCCCCChHhHHHHHHHHHHHhc
Q 024063 1 MIKMCIEFIFDPIKWPREQMDEDFFKLSKMFN 32 (273)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~l~~~f~~l~~~~~ 32 (273)
+|+|+++|+.+. ..+..+|+++|..++.+++
T Consensus 44 ~~~~~~~v~~p~-~~~~~~l~~~l~~l~~~~~ 74 (81)
T cd04869 44 LFKAQATLALPA-GTDLDALREELEELCDDLN 74 (81)
T ss_pred eEEEEEEEecCC-CCCHHHHHHHHHHHHHHhc
Confidence 478999999975 6789999999999999873
No 50
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=83.88 E-value=9.9 Score=34.58 Aligned_cols=64 Identities=27% Similarity=0.409 Sum_probs=41.1
Q ss_pred CCCCceEEEEEECCc--hhHHHHHHhhhc-CCCCceEEEEeeCCCCC--CCcHHHHHHHHcCCCEEEEc
Q 024063 43 IDPKYKVAVLASKQE--HCLVDFLYGWQE-GKLPVEITCVISNHDRG--PNSHVIRFLERHGIPYHYLC 106 (273)
Q Consensus 43 ~~~~~kiav~~Sg~g--~~l~~ll~~~~~-~~l~~~i~~Vvs~~~~~--~~~~~~~~a~~~gIp~~~~~ 106 (273)
..+.-||+|..||+. .+|-.++..+++ ...+.++.+|-.++.-. ....+.++|+++|||+.++.
T Consensus 26 i~~~~kilVa~SGG~DS~~LL~ll~~l~~~~~~~~~l~av~vd~g~~~~~~~~~~~~~~~lgI~~~v~~ 94 (258)
T PRK10696 26 IEEGDRVMVCLSGGKDSYTLLDILLNLQKRAPINFELVAVNLDQKQPGFPEHVLPEYLESLGVPYHIEE 94 (258)
T ss_pred CCCCCEEEEEecCCHHHHHHHHHHHHHHHhCCCCeEEEEEEecCCCCCCCHHHHHHHHHHhCCCEEEEE
Confidence 345679999999974 345545544332 33346888776665211 12346899999999998764
No 51
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=83.49 E-value=2.2 Score=32.25 Aligned_cols=32 Identities=13% Similarity=0.154 Sum_probs=27.9
Q ss_pred CeeEEEEEEcCCCCCChHhHHHHHHHHHHHhc
Q 024063 1 MIKMCIEFIFDPIKWPREQMDEDFFKLSKMFN 32 (273)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~l~~~f~~l~~~~~ 32 (273)
+|+|+++++.++...+.++|+++|.+++.+++
T Consensus 40 ~f~~~~~v~~~~~~~~~~~L~~~l~~l~~~~~ 71 (88)
T cd04872 40 YFTMIMIVDISESNLDFAELQEELEELGKELG 71 (88)
T ss_pred ccEEEEEEEeCCCCCCHHHHHHHHHHHHHHcC
Confidence 48999999987656789999999999999874
No 52
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=83.30 E-value=8.6 Score=36.07 Aligned_cols=70 Identities=20% Similarity=0.228 Sum_probs=41.9
Q ss_pred CceEEEEEECC-chh-HHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCC
Q 024063 46 KYKVAVLASKQ-EHC-LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 123 (273)
Q Consensus 46 ~~kiav~~Sg~-g~~-l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~ 123 (273)
++||||+|+|. |+. +..+++ .+ +.++++|+... +++..+++|+++|+|+..-+ .+++++. .+.
T Consensus 1 klrVAIIG~G~IG~~h~~~ll~---~~--~~elvaV~d~d---~es~~la~A~~~Gi~~~~~~------~e~ll~~-~dI 65 (285)
T TIGR03215 1 KVKVAIIGSGNIGTDLMYKLLR---SE--HLEMVAMVGID---PESDGLARARELGVKTSAEG------VDGLLAN-PDI 65 (285)
T ss_pred CcEEEEEeCcHHHHHHHHHHHh---CC--CcEEEEEEeCC---cccHHHHHHHHCCCCEEECC------HHHHhcC-CCC
Confidence 47999999976 443 244443 12 47888877643 23345678999999987411 1222210 157
Q ss_pred CEEEEEe
Q 024063 124 DFLVLAR 130 (273)
Q Consensus 124 Dlvv~ag 130 (273)
|+|+.+.
T Consensus 66 DaV~iaT 72 (285)
T TIGR03215 66 DIVFDAT 72 (285)
T ss_pred CEEEECC
Confidence 7777665
No 53
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=81.13 E-value=12 Score=35.93 Aligned_cols=76 Identities=17% Similarity=0.256 Sum_probs=46.5
Q ss_pred HHHHHcCCCEEEEcCCCCchHHHHHHHhcCCCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhh
Q 024063 93 RFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRS 172 (273)
Q Consensus 93 ~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~ 172 (273)
++++++|..+.... ++.+.++++|+|..-.|...- .|.+.| +.....+..|-+..++++.
T Consensus 204 ~~~~~~g~~~~~~~--------d~~~a~~~aDvvyt~~w~sm~-~~~~~~-----------~~~~~~~~~y~v~~ell~~ 263 (334)
T PRK12562 204 ALAQKHGGKITLTE--------DIAAGVKGADFIYTDVWVSMG-EPKEKW-----------AERIALLRGYQVNSKMMAL 263 (334)
T ss_pred HHHHHcCCeEEEEc--------CHHHHhCCCCEEEEcCccccc-cchhhH-----------HHHHHhccCCcCCHHHHHh
Confidence 34555666554322 244566789999988774310 011111 1122344568999999998
Q ss_pred c-CCCeeEeecCCCCCCCC
Q 024063 173 Y-GKDVINIHHGLLPSFKG 190 (273)
Q Consensus 173 ~-~~~~iNiHpslLP~yRG 190 (273)
. +..++-+|| ||++|+
T Consensus 264 a~~~~~i~mHc--LP~~~~ 280 (334)
T PRK12562 264 TGNPQVKFLHC--LPAFHD 280 (334)
T ss_pred hcCCCCEEECC--CCCCCc
Confidence 5 577999999 588875
No 54
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=80.99 E-value=6.7 Score=34.47 Aligned_cols=56 Identities=20% Similarity=0.201 Sum_probs=35.8
Q ss_pred eEEEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCCC---------cHHHHHHHHcCCCEEEEc
Q 024063 48 KVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPN---------SHVIRFLERHGIPYHYLC 106 (273)
Q Consensus 48 kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~---------~~~~~~a~~~gIp~~~~~ 106 (273)
|++++.||+-=+.-++..+.+.| .+++++++..+.... ..+...|+..|||...++
T Consensus 1 kv~v~~SGGkDS~~al~~a~~~G---~~v~~l~~~~~~~~~~~~~h~~~~e~~~~~A~~lgipl~~i~ 65 (194)
T cd01994 1 KVVALISGGKDSCYALYRALEEG---HEVVALLNLTPEEGSSMMYHTVNHELLELQAEAMGIPLIRIE 65 (194)
T ss_pred CEEEEecCCHHHHHHHHHHHHcC---CEEEEEEEEecCCCCcccccccCHHHHHHHHHHcCCcEEEEe
Confidence 68888898643333334444444 678887765432211 236788999999998876
No 55
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=79.86 E-value=7.8 Score=35.71 Aligned_cols=69 Identities=20% Similarity=0.273 Sum_probs=41.8
Q ss_pred CCceEEEEEECCch---hHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhc
Q 024063 45 PKYKVAVLASKQEH---CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ 121 (273)
Q Consensus 45 ~~~kiav~~Sg~g~---~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~ 121 (273)
+++||+|+|.|... .+.++.+. +.. .++++|+... .....++|+++|++ ..+. .+.++++
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~---~~~-~~~vav~d~~----~~~a~~~a~~~~~~-~~~~--------~~~~ll~ 64 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAAL---GGG-LELVAVVDRD----PERAEAFAEEFGIA-KAYT--------DLEELLA 64 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhC---CCc-eEEEEEecCC----HHHHHHHHHHcCCC-cccC--------CHHHHhc
Confidence 46899999988432 23333221 211 5777777654 23478899999999 2222 1334555
Q ss_pred --CCCEEEEEe
Q 024063 122 --NTDFLVLAR 130 (273)
Q Consensus 122 --~~Dlvv~ag 130 (273)
++|+|+++.
T Consensus 65 ~~~iD~V~Iat 75 (342)
T COG0673 65 DPDIDAVYIAT 75 (342)
T ss_pred CCCCCEEEEcC
Confidence 478888876
No 56
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=79.38 E-value=3.8 Score=34.30 Aligned_cols=80 Identities=18% Similarity=0.176 Sum_probs=46.3
Q ss_pred CCceEEEEEECCc--hhH-HHHHHhhhcCCCCceE--EEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHH
Q 024063 45 PKYKVAVLASKQE--HCL-VDFLYGWQEGKLPVEI--TCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLEL 119 (273)
Q Consensus 45 ~~~kiav~~Sg~g--~~l-~~ll~~~~~~~l~~~i--~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~ 119 (273)
+++||.|+.+|+. |.+ +++++..... +.+| .++-.+...+.+....+.++++||++.....+ .+.+.
T Consensus 1 ~~~kVLFVC~gN~cRSpmAE~l~~~~~~~--~~~v~SAGt~~~~g~~~~~~a~~vl~e~Gid~~~~~~k------~i~~~ 72 (139)
T COG0394 1 MMMKVLFVCTGNICRSPMAEALLRHLAPD--NVEVDSAGTGGHPGEPPDPRAVEVLAEHGIDISGHRSK------QLTEE 72 (139)
T ss_pred CCceEEEEcCCCcccCHHHHHHHHHhccC--CeEEECCccCCCCCCCCCHHHHHHHHHcCCCcCCccCc------cCchh
Confidence 3689999999874 554 5566654332 2333 22222222334566889999999998742211 12222
Q ss_pred h-cCCCEEEEEeec
Q 024063 120 V-QNTDFLVLARYM 132 (273)
Q Consensus 120 l-~~~Dlvv~ag~~ 132 (273)
. +++|+||...-.
T Consensus 73 ~~~~~DlIitmd~~ 86 (139)
T COG0394 73 DFDEFDLIITMDES 86 (139)
T ss_pred hhhhCCEEEEeChH
Confidence 2 378999977633
No 57
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=79.17 E-value=27 Score=34.26 Aligned_cols=54 Identities=7% Similarity=0.054 Sum_probs=34.4
Q ss_pred CceEEEEEECC--ch-hHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEc
Q 024063 46 KYKVAVLASKQ--EH-CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 106 (273)
Q Consensus 46 ~~kiav~~Sg~--g~-~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~ 106 (273)
|+||+|+||.+ |+ .|.. +... ++ ..+|+++.++++ -.-+.+.|++++-.+..+.
T Consensus 1 mk~VaILGsTGSIG~~tL~v-i~~~--p~-~f~VvaLaa~~n---~~~l~~q~~~f~p~~v~i~ 57 (385)
T PRK05447 1 MKRITILGSTGSIGTQTLDV-IRRN--PD-RFRVVALSAGKN---VELLAEQAREFRPKYVVVA 57 (385)
T ss_pred CceEEEEcCChHHHHHHHHH-HHhC--cc-ccEEEEEEcCCC---HHHHHHHHHHhCCCEEEEc
Confidence 47999999543 32 2322 2221 22 489999887662 2457888999997776654
No 58
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=78.21 E-value=17 Score=34.47 Aligned_cols=65 Identities=12% Similarity=0.254 Sum_probs=39.4
Q ss_pred HHHHhcCCCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCCCCCCCCC
Q 024063 116 LLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG 191 (273)
Q Consensus 116 ~~~~l~~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~ 191 (273)
+.+.++++|+|..-.|.++ +.+-+ ...+. ..+.++..+..|.+..++++.. +.+-+|| ||.+||.
T Consensus 212 ~~~av~~aDvvy~d~w~~~-----~~~~~-~~~~~-~~~~r~~~~~~y~v~~elm~~~--~~~vmH~--lP~~Rg~ 276 (311)
T PRK14804 212 LHKAVSHADYVYTDTWLDM-----EFFND-PSYAD-KKKQRMELMMPYQINSSLMEKT--NAKVMHD--MPIHAGY 276 (311)
T ss_pred HHHHhCCCCEEEeeeeEEC-----cccCc-cchHH-HHHHHHHhccCCeECHHHHhCC--CCeEeCC--CCCCCCc
Confidence 3455668999988677651 11100 00000 1223445556789999999853 4788999 5999885
No 59
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=76.70 E-value=25 Score=33.52 Aligned_cols=119 Identities=15% Similarity=0.219 Sum_probs=70.1
Q ss_pred CCceEEEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHH----cCCCEEEEcCCCCchHHHHHHHh
Q 024063 45 PKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLER----HGIPYHYLCAKENEREEELLELV 120 (273)
Q Consensus 45 ~~~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~----~gIp~~~~~~~~~~~~~~~~~~l 120 (273)
...|++++|-|+- -...|+.+... +..++. |.|...-.++..+.++|++ .|=-+.... +..+.+
T Consensus 152 ~g~k~a~vGDgNN-v~nSl~~~~a~--~G~dv~-ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~t~--------d~~eAv 219 (310)
T COG0078 152 KGLKLAYVGDGNN-VANSLLLAAAK--LGMDVR-IATPKGYEPDPEVVEKAKENAKESGGKITLTE--------DPEEAV 219 (310)
T ss_pred cCcEEEEEcCcch-HHHHHHHHHHH--hCCeEE-EECCCcCCcCHHHHHHHHHHHHhcCCeEEEec--------CHHHHh
Confidence 4589999997732 23344444322 234543 4444433345556666544 453333322 133456
Q ss_pred cCCCEEEEEeecCCcchhhHhhhhhhhhhhhc-ccCcccccccccCChhHHhhcCCCeeEeecCCCCCCCC
Q 024063 121 QNTDFLVLARYMQPVPLQKEAYLGYKLLESLS-SKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKG 190 (273)
Q Consensus 121 ~~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG 190 (273)
+++|+|..-.|..+ ....+ ++....+.-.|-+.+++++..+...+=+|= ||++||
T Consensus 220 ~gADvvyTDvWvSM-------------Gee~e~~~~~~~~~~~yQVn~~lm~~a~~~~ifmHC--LPA~rG 275 (310)
T COG0078 220 KGADVVYTDVWVSM-------------GEEAEAEERRIAFLPPYQVNEELMALAGPDAIFMHC--LPAHRG 275 (310)
T ss_pred CCCCEEEecCcccC-------------cchhhhHHHHHhhCCCceeCHHHHhhcCCCeEEEeC--CCCCCC
Confidence 68898887766541 12222 222444555588999999999889999996 899997
No 60
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=76.17 E-value=13 Score=35.23 Aligned_cols=121 Identities=17% Similarity=0.137 Sum_probs=67.4
Q ss_pred chhHHHHHHhh---h-cCCCCceEEEEeeCCC-CCCCcHHHHHHHHcCCCEEEEcCCCCch--------HHHHHHHhcCC
Q 024063 57 EHCLVDFLYGW---Q-EGKLPVEITCVISNHD-RGPNSHVIRFLERHGIPYHYLCAKENER--------EEELLELVQNT 123 (273)
Q Consensus 57 g~~l~~ll~~~---~-~~~l~~~i~~Vvs~~~-~~~~~~~~~~a~~~gIp~~~~~~~~~~~--------~~~~~~~l~~~ 123 (273)
.|..|+|++.+ + .|.+..--++++.+-. .....+....+...|+-+..+..+.-.. ..++.+.++++
T Consensus 135 ~HPtQ~LaDl~Ti~e~~G~l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~d~~ea~~~a 214 (305)
T PRK00856 135 QHPTQALLDLLTIREEFGRLEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLIAPPTLLPEGMPEYGVHTDLDEVIEDA 214 (305)
T ss_pred CCcHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEECCcccCcccccceEEECCHHHHhCCC
Confidence 36666666542 1 2555432233443221 1112446677888898776655331110 12334566689
Q ss_pred CEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCCCCCCCCC
Q 024063 124 DFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG 191 (273)
Q Consensus 124 Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~ 191 (273)
|+|..-+|.. |++-+ + ..+.....+.+|.+..++++..+..++-+|| ||.+||.
T Consensus 215 Dvvyt~~~q~------e~~~~-~-----~~~~~~~~~~~y~v~~~ll~~a~~~~~~mHc--LPa~Rg~ 268 (305)
T PRK00856 215 DVVMMLRVQK------ERMDG-G-----LLPSYEEYKRSYGLTAERLALAKPDAIVMHP--GPVNRGV 268 (305)
T ss_pred CEEEECCccc------ccccc-c-----chHHHHHHhccCccCHHHHhhcCCCCEEECC--CCCCCCC
Confidence 9998766532 21100 0 0112233445689999999988888999999 6888873
No 61
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=75.61 E-value=34 Score=33.66 Aligned_cols=130 Identities=9% Similarity=0.081 Sum_probs=67.7
Q ss_pred CceEEEEEE-----CCchh-HHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHH----HHHHcCCCEEEEcCCCCchHHH
Q 024063 46 KYKVAVLAS-----KQEHC-LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIR----FLERHGIPYHYLCAKENEREEE 115 (273)
Q Consensus 46 ~~kiav~~S-----g~g~~-l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~----~a~~~gIp~~~~~~~~~~~~~~ 115 (273)
..||++++. |.+.+ ...++..+. .++.++. +++.+.-.....+.+ .+++.|..+.... +
T Consensus 187 g~kVaivg~~~~~~g~~~~Va~Sl~~~~~--~lG~~v~-~~~P~~~~~~~~i~~~a~~~~~~~G~~i~~~~--------d 255 (395)
T PRK07200 187 GKKIAMTWAYSPSYGKPLSVPQGIIGLMT--RFGMDVT-LAHPEGYDLMPEVVEVAKKNAKASGGSFRQVN--------S 255 (395)
T ss_pred CCEEEEEeccccccCCcchHHHHHHHHHH--HcCCEEE-EECCCccCCCHHHHHHHHHHHHHcCCeEEEEc--------C
Confidence 368998875 43332 233444322 2345653 333331111223334 3667787765433 2
Q ss_pred HHHHhcCCCEEEEEeecCCcchhhHhhhhhhhhhh---hccc----CcccccccccCChhHHhhcCCC-eeEeecCCCCC
Q 024063 116 LLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLES---LSSK----GSLTSYFNMILSGKFLRSYGKD-VINIHHGLLPS 187 (273)
Q Consensus 116 ~~~~l~~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~---~~~~----~~~~~y~~~il~~~~l~~~~~~-~iNiHpslLP~ 187 (273)
+.+.++++|+|..-.|..+ ..+.|++-.+..... .+.+ .....+..|-+..+.++..+.+ ++-+|| ||.
T Consensus 256 ~~eav~~aDvVYtd~W~sm-~~~~er~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~v~~elm~~a~~~~ai~MHc--LPa 332 (395)
T PRK07200 256 MEEAFKDADIVYPKSWAPY-KVMEERTELYRAGDHEGIKALEKELLAQNAQHKDWHCTEEMMKLTKDGKALYMHC--LPA 332 (395)
T ss_pred HHHHhCCCCEEEEcCeeec-ccccccccccccccchhhhhhhhhhhHHHHHccCCCcCHHHHhccCCCCcEEECC--CCC
Confidence 4456779999988777531 011222210000000 0000 1133456689999999988764 999999 488
Q ss_pred CC
Q 024063 188 FK 189 (273)
Q Consensus 188 yR 189 (273)
+|
T Consensus 333 ~r 334 (395)
T PRK07200 333 DI 334 (395)
T ss_pred CC
Confidence 86
No 62
>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]
Probab=75.21 E-value=15 Score=36.26 Aligned_cols=80 Identities=15% Similarity=0.238 Sum_probs=49.5
Q ss_pred eEEEEEECCchhHHHHHHhhhcCCCCceEEEEeeCC----CCCCCcHHHHHHHHcCCCEEEEcCCCCc---hHHHHHHHh
Q 024063 48 KVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNH----DRGPNSHVIRFLERHGIPYHYLCAKENE---REEELLELV 120 (273)
Q Consensus 48 kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~----~~~~~~~~~~~a~~~gIp~~~~~~~~~~---~~~~~~~~l 120 (273)
|+.=.++-+.+.++++-.++.++ .+-+.-|++++ ..-+...+.+.|+++|+|+++ +..... ++..+...+
T Consensus 134 ~l~EvG~tn~t~~~d~~~AIne~--ta~llkV~s~~~~f~~~l~~~~l~~ia~~~~lpviv-D~aSg~~v~~e~~l~~~l 210 (395)
T COG1921 134 KLVEVGTTNRTHLKDYELAINEN--TALLLKVHSSNYGFTGMLSEEELVEIAHEKGLPVIV-DLASGALVDKEPDLREAL 210 (395)
T ss_pred EEEEecccCcCCHHHHHHHhccC--CeeEEEEeeccccccccccHHHHHHHHHHcCCCEEE-ecCCccccccccchhHHH
Confidence 44444444455666665565554 35666777764 111235588999999999986 522111 345566677
Q ss_pred c-CCCEEEEEe
Q 024063 121 Q-NTDFLVLAR 130 (273)
Q Consensus 121 ~-~~Dlvv~ag 130 (273)
+ .+|+|+..|
T Consensus 211 a~GaDLV~~Sg 221 (395)
T COG1921 211 ALGADLVSFSG 221 (395)
T ss_pred hcCCCEEEEec
Confidence 7 899998665
No 63
>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=75.04 E-value=13 Score=33.84 Aligned_cols=52 Identities=25% Similarity=0.374 Sum_probs=33.7
Q ss_pred CCceEEEEEECCc-hhH-HHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEE
Q 024063 45 PKYKVAVLASKQE-HCL-VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYH 103 (273)
Q Consensus 45 ~~~kiav~~Sg~g-~~l-~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~ 103 (273)
.|.|+++.+||+- +.| ..+|. .|. ..|....|.-. +.+..+.+|.+.|+|+.
T Consensus 3 sk~kvaiigsgni~tdlm~k~lr---~g~-~le~~~mvgid---p~sdglaraarlgv~tt 56 (310)
T COG4569 3 SKRKVAIIGSGNIGTDLMIKILR---HGQ-HLEMAVMVGID---PQSDGLARAARLGVATT 56 (310)
T ss_pred CcceEEEEccCcccHHHHHHHHh---cCC-cccceeEEccC---CCccHHHHHHhcCCcch
Confidence 5789999999984 443 33433 333 24444444332 35678899999999975
No 64
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=74.57 E-value=15 Score=27.52 Aligned_cols=69 Identities=19% Similarity=0.250 Sum_probs=36.4
Q ss_pred eEEEEEECCchhHHHHHHhhhc-CCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCCCEE
Q 024063 48 KVAVLASKQEHCLVDFLYGWQE-GKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFL 126 (273)
Q Consensus 48 kiav~~Sg~g~~l~~ll~~~~~-~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~Dlv 126 (273)
||+|+|+|+ --.+|...+.+ |.-+.+|.. ++++ ......+++++.++.+...+ .. +.++++|++
T Consensus 1 kI~iIG~G~--mg~al~~~l~~~g~~~~~v~~-~~~r---~~~~~~~~~~~~~~~~~~~~------~~---~~~~~advv 65 (96)
T PF03807_consen 1 KIGIIGAGN--MGSALARGLLASGIKPHEVII-VSSR---SPEKAAELAKEYGVQATADD------NE---EAAQEADVV 65 (96)
T ss_dssp EEEEESTSH--HHHHHHHHHHHTTS-GGEEEE-EEES---SHHHHHHHHHHCTTEEESEE------HH---HHHHHTSEE
T ss_pred CEEEECCCH--HHHHHHHHHHHCCCCceeEEe-eccC---cHHHHHHHHHhhccccccCC------hH---HhhccCCEE
Confidence 789997665 22333333222 322366653 4344 23456778888886555311 12 334478999
Q ss_pred EEEee
Q 024063 127 VLARY 131 (273)
Q Consensus 127 v~ag~ 131 (273)
+++=-
T Consensus 66 ilav~ 70 (96)
T PF03807_consen 66 ILAVK 70 (96)
T ss_dssp EE-S-
T ss_pred EEEEC
Confidence 98753
No 65
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=73.70 E-value=78 Score=31.28 Aligned_cols=116 Identities=10% Similarity=0.106 Sum_probs=68.3
Q ss_pred hHhHHHHHHHHHHHhccccc---ccccCCCCCCceEEEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCCCc----
Q 024063 17 REQMDEDFFKLSKMFNAMRS---VVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNS---- 89 (273)
Q Consensus 17 ~~~l~~~f~~l~~~~~~~~~---~~r~~~~~~~~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~---- 89 (273)
...|...|.+|-.++.++.. .-..|.+..+.||||..|.+|..+++++..+++....++|.. +.-.-.+..+
T Consensus 97 ~G~l~~~~~~lk~~L~~eGlfd~~~k~~lP~~p~~i~vits~~~aa~~D~~~~~~~r~p~~~~~~-~~~~vQG~~a~~~i 175 (432)
T TIGR00237 97 EGLLQLAYEQLKEKLAAEGLFDQEYKKPLPHFPKRVGVITSQTGAALADILHILKRRDPSLKVVI-YPTLVQGEGAVQSI 175 (432)
T ss_pred hHHHHHHHHHHHHHHHHCCCCCchhcCCCCCCCCEEEEEeCCccHHHHHHHHHHHhhCCCceEEE-ecccccCccHHHHH
Confidence 56666777777666533332 111344556799999999999999999988776554466652 2222222221
Q ss_pred -HHHHHHHHcC-CCEEEEcCCCCc-------hHHHHHHHhcCCCEEEEEeecC
Q 024063 90 -HVIRFLERHG-IPYHYLCAKENE-------REEELLELVQNTDFLVLARYMQ 133 (273)
Q Consensus 90 -~~~~~a~~~g-Ip~~~~~~~~~~-------~~~~~~~~l~~~Dlvv~ag~~~ 133 (273)
..++.+...+ +-+..+.+-.++ +++++.+.+.++.+=|+.|-+|
T Consensus 176 ~~al~~~~~~~~~dviii~RGGGs~eDL~~Fn~e~~~rai~~~~~Pvis~iGH 228 (432)
T TIGR00237 176 VESIELANTKNECDVLIVGRGGGSLEDLWSFNDEKVARAIFLSKIPIISAVGH 228 (432)
T ss_pred HHHHHHhhcCCCCCEEEEecCCCCHHHhhhcCcHHHHHHHHcCCCCEEEecCc
Confidence 1233343333 566666543222 3567888877555545567777
No 66
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=73.37 E-value=25 Score=33.68 Aligned_cols=65 Identities=15% Similarity=0.152 Sum_probs=35.6
Q ss_pred CceEEEEEECC-chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCCC
Q 024063 46 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 124 (273)
Q Consensus 46 ~~kiav~~Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~D 124 (273)
++||++.|.|+ |... +.+++.. ...++++|++.++. ...+ .+++++... + ..+.+.++|
T Consensus 3 kIRVgIVG~GnIGr~~---a~al~~~-pd~ELVgV~dr~~~------~~~~--~~~~v~~~~-----d---~~e~l~~iD 62 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSV---EKAIQQQ-PDMELVGVFSRRGA------ETLD--TETPVYAVA-----D---DEKHLDDVD 62 (324)
T ss_pred CcEEEEEeecHHHHHH---HHHHHhC-CCcEEEEEEcCCcH------HHHh--hcCCccccC-----C---HHHhccCCC
Confidence 58999999987 3322 2222211 24799999877631 1122 234443211 1 122235899
Q ss_pred EEEEEe
Q 024063 125 FLVLAR 130 (273)
Q Consensus 125 lvv~ag 130 (273)
++++++
T Consensus 63 VViIct 68 (324)
T TIGR01921 63 VLILCM 68 (324)
T ss_pred EEEEcC
Confidence 998876
No 67
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=72.41 E-value=34 Score=31.90 Aligned_cols=92 Identities=17% Similarity=0.197 Sum_probs=56.8
Q ss_pred CCCCCCceEEEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCCC-----cHHHHHHHHcC----CCEEEEcCCCCc
Q 024063 41 PDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPN-----SHVIRFLERHG----IPYHYLCAKENE 111 (273)
Q Consensus 41 ~~~~~~~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~-----~~~~~~a~~~g----Ip~~~~~~~~~~ 111 (273)
|.+..+.||||+.|.+|..+++++..+++.....++... ...-.+.+ ...++.+.+.+ .-+..+.+-.++
T Consensus 9 ~lP~~p~~I~vITs~~gAa~~D~~~~~~~r~~~~~~~~~-p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs 87 (319)
T PF02601_consen 9 PLPKFPKRIAVITSPTGAAIQDFLRTLKRRNPIVEIILY-PASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGS 87 (319)
T ss_pred CCCCCCCEEEEEeCCchHHHHHHHHHHHHhCCCcEEEEE-eccccccchHHHHHHHHHHHHhccccccccEEEEecCCCC
Confidence 344567899999999999999998877664434665432 22222222 22345555444 566666543322
Q ss_pred -------hHHHHHHHhcCCCEEEEEeecC
Q 024063 112 -------REEELLELVQNTDFLVLARYMQ 133 (273)
Q Consensus 112 -------~~~~~~~~l~~~Dlvv~ag~~~ 133 (273)
+++++.+.+.++.+=|+.|-||
T Consensus 88 ~eDL~~FN~e~varai~~~~~PvisaIGH 116 (319)
T PF02601_consen 88 IEDLWAFNDEEVARAIAASPIPVISAIGH 116 (319)
T ss_pred hHHhcccChHHHHHHHHhCCCCEEEecCC
Confidence 3577888887555556678788
No 68
>PRK00194 hypothetical protein; Validated
Probab=72.32 E-value=7.7 Score=29.16 Aligned_cols=32 Identities=16% Similarity=0.145 Sum_probs=27.1
Q ss_pred CeeEEEEEEcCCCCCChHhHHHHHHHHHHHhc
Q 024063 1 MIKMCIEFIFDPIKWPREQMDEDFFKLSKMFN 32 (273)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~l~~~f~~l~~~~~ 32 (273)
+++|++++++++...+.+.|+++|.+++.+++
T Consensus 42 ~~~~~~~v~~~~~~~~~~~l~~~l~~l~~~~~ 73 (90)
T PRK00194 42 YFTMIMLVDISESKKDFAELKEELEELGKELG 73 (90)
T ss_pred eeEEEEEEEecCCCCCHHHHHHHHHHHHHHcC
Confidence 47899999987656778999999999998873
No 69
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=71.87 E-value=17 Score=31.01 Aligned_cols=58 Identities=21% Similarity=0.277 Sum_probs=35.6
Q ss_pred eEEEEEECCc--hhHHHHHHhhhcCCCCceEEEEeeCCCCCCC-----cHHHHHHHHcCCCEEEEc
Q 024063 48 KVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPN-----SHVIRFLERHGIPYHYLC 106 (273)
Q Consensus 48 kiav~~Sg~g--~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~-----~~~~~~a~~~gIp~~~~~ 106 (273)
||+|-.||+. ..|-.++..+.. ..+.++.+|..++.-... ..+.++|+++|||++...
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~-~~~~~~~~~~vdh~~~~~s~~~~~~v~~~~~~~~i~~~~~~ 65 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRR-RNGIKLIAVHVDHGLREESDEEAEFVEEICEQLGIPLYIVR 65 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHT-TTTTEEEEEEEE-STSCCHHHHHHHHHHHHHHTT-EEEEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHH-hcCCCeEEEEEecCCCcccchhHHHHHHHHHhcCCceEEEE
Confidence 7899999863 344445554433 234588888777643222 358899999999998876
No 70
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=71.77 E-value=17 Score=36.40 Aligned_cols=109 Identities=10% Similarity=0.084 Sum_probs=59.4
Q ss_pred CceEEEEEE-CC-chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCc------------
Q 024063 46 KYKVAVLAS-KQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENE------------ 111 (273)
Q Consensus 46 ~~kiav~~S-g~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~------------ 111 (273)
++||++||| |+ |+.--+++....+ .++++++-+++. -.-+.+.|+++.-.+..+.+....
T Consensus 57 ~KkI~ILGSTGSIGtqtLdVI~~~pd---~f~vvaLaag~N---i~lL~~q~~~f~p~~v~v~d~~~~~~l~~~l~~~~~ 130 (454)
T PLN02696 57 PKPISLLGSTGSIGTQTLDIVAENPD---KFKVVALAAGSN---VTLLADQVRKFKPKLVAVRNESLVDELKEALADLDD 130 (454)
T ss_pred ccEEEEecCCcHhhHHHHHHHHhCcc---ccEEEEEECCCC---HHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhcCCCC
Confidence 479999998 55 5655555654322 478888877652 123566777887666555321000
Q ss_pred ------hHHHHHHHhc--CCCEEEEE--eecCCcchhhHhhhhhhhhh--hhcccCccccccccc
Q 024063 112 ------REEELLELVQ--NTDFLVLA--RYMQPVPLQKEAYLGYKLLE--SLSSKGSLTSYFNMI 164 (273)
Q Consensus 112 ------~~~~~~~~l~--~~Dlvv~a--g~~~~~p~~~~~~~~~~~~~--~~~~~~~~~~y~~~i 164 (273)
-++.+.+++. ++|+||.+ |+--+.|. +--++..+ .|-+|..+......+
T Consensus 131 ~~~vl~G~egl~~la~~~evDiVV~AIvG~aGL~pT----l~AIkaGK~VALANKESLV~aG~lI 191 (454)
T PLN02696 131 KPEIIPGEEGIVEVARHPEAVTVVTGIVGCAGLKPT----VAAIEAGKDIALANKETLIAGGPFV 191 (454)
T ss_pred CcEEEECHHHHHHHHcCCCCCEEEEeCccccchHHH----HHHHHCCCcEEEecHHHHHhhHHHH
Confidence 1245555565 57988865 43232221 11112222 345666666555544
No 71
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=71.07 E-value=9.2 Score=28.42 Aligned_cols=59 Identities=12% Similarity=0.202 Sum_probs=36.8
Q ss_pred CceEEEEEECCchh---HHHHHHhhhcCCCCceEEEEeeCCC-CCCCcHHHHHHHHcCCCEEEEcC
Q 024063 46 KYKVAVLASKQEHC---LVDFLYGWQEGKLPVEITCVISNHD-RGPNSHVIRFLERHGIPYHYLCA 107 (273)
Q Consensus 46 ~~kiav~~Sg~g~~---l~~ll~~~~~~~l~~~i~~Vvs~~~-~~~~~~~~~~a~~~gIp~~~~~~ 107 (273)
.+||+|.++-..+. +.+-|+...... -.++ +|+.-. +..+.-..++|+++|+|+..++.
T Consensus 3 g~rVli~GgR~~~D~~~i~~~Ld~~~~~~--~~~~-lvhGga~~GaD~iA~~wA~~~gv~~~~~~a 65 (71)
T PF10686_consen 3 GMRVLITGGRDWTDHELIWAALDKVHARH--PDMV-LVHGGAPKGADRIAARWARERGVPVIRFPA 65 (71)
T ss_pred CCEEEEEECCccccHHHHHHHHHHHHHhC--CCEE-EEECCCCCCHHHHHHHHHHHCCCeeEEeCc
Confidence 47899998876543 333344433322 1233 566543 44455678999999999988763
No 72
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=70.25 E-value=63 Score=31.67 Aligned_cols=115 Identities=13% Similarity=0.094 Sum_probs=64.2
Q ss_pred HhHHHHHHHHHHHhccccc---ccccCCCCCCceEEEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCCCc-----
Q 024063 18 EQMDEDFFKLSKMFNAMRS---VVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNS----- 89 (273)
Q Consensus 18 ~~l~~~f~~l~~~~~~~~~---~~r~~~~~~~~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~----- 89 (273)
..|...|.++-.++.++.. .-..|.+.-+.||||..|.+|..+++++..+......++|... .-.-.+.++
T Consensus 104 G~l~~~~~~lk~~L~~eGlfd~~~k~~lP~~p~~I~viTs~~gAa~~D~~~~~~~r~p~~~~~~~-~~~vQG~~A~~~i~ 182 (438)
T PRK00286 104 GALAAAFEQLKEKLAAEGLFDPERKKPLPFFPKRIGVITSPTGAAIRDILTVLRRRFPLVEVIIY-PTLVQGEGAAASIV 182 (438)
T ss_pred cHHHHHHHHHHHHHHHCCCCChhhcCCCCCCCCEEEEEeCCccHHHHHHHHHHHhcCCCCeEEEe-cCcCcCccHHHHHH
Confidence 4455555555555422222 0113444557999999999999999998877665433565432 222222221
Q ss_pred HHHHHHHHcCCCEEEEcCCCCc-------hHHHHHHHhcCCCEEEEEeecC
Q 024063 90 HVIRFLERHGIPYHYLCAKENE-------REEELLELVQNTDFLVLARYMQ 133 (273)
Q Consensus 90 ~~~~~a~~~gIp~~~~~~~~~~-------~~~~~~~~l~~~Dlvv~ag~~~ 133 (273)
..++.+.+.+.-+..+.+-.++ +++++.+.+.++.+=|+.|-||
T Consensus 183 ~al~~~~~~~~Dviii~RGGGS~eDL~~Fn~e~v~~ai~~~~~Pvis~IGH 233 (438)
T PRK00286 183 AAIERANARGEDVLIVARGGGSLEDLWAFNDEAVARAIAASRIPVISAVGH 233 (438)
T ss_pred HHHHHhcCCCCCEEEEecCCCCHHHhhccCcHHHHHHHHcCCCCEEEeccC
Confidence 1234444444566666543222 3577888887544445667777
No 73
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=69.29 E-value=25 Score=30.82 Aligned_cols=83 Identities=12% Similarity=0.179 Sum_probs=42.6
Q ss_pred eEEEEE-ECCc--hhHHHHHHhhhcCCCCceEEEEeeCCCCCC-CcHHHHHHHHcCCCEEEEcCCCCchHH---HHHHHh
Q 024063 48 KVAVLA-SKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP-NSHVIRFLERHGIPYHYLCAKENEREE---ELLELV 120 (273)
Q Consensus 48 kiav~~-Sg~g--~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~-~~~~~~~a~~~gIp~~~~~~~~~~~~~---~~~~~l 120 (273)
-|++.| +|.| +.+..|....+.. +.+|..|-++.-+.. -..+..+|+..|+|++......+ ..+ +.++..
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~-~~~~~~~~l~~~ 79 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESD-PAEIAREALEKF 79 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSC-HHHHHHHHHHHH
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchh-hHHHHHHHHHHH
Confidence 455555 4555 4555555443332 345544444432221 24478999999999986442211 111 122223
Q ss_pred c--CCCEEEEEeecC
Q 024063 121 Q--NTDFLVLARYMQ 133 (273)
Q Consensus 121 ~--~~Dlvv~ag~~~ 133 (273)
+ +.|+|++=.-++
T Consensus 80 ~~~~~D~vlIDT~Gr 94 (196)
T PF00448_consen 80 RKKGYDLVLIDTAGR 94 (196)
T ss_dssp HHTTSSEEEEEE-SS
T ss_pred hhcCCCEEEEecCCc
Confidence 2 589998876665
No 74
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=67.29 E-value=22 Score=34.50 Aligned_cols=58 Identities=19% Similarity=0.019 Sum_probs=38.5
Q ss_pred CCCceEEEEEECCc-h-hHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEc
Q 024063 44 DPKYKVAVLASKQE-H-CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 106 (273)
Q Consensus 44 ~~~~kiav~~Sg~g-~-~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~ 106 (273)
.++.||+|..||+- | .+..++.. . ..++.+|..+........+.++|+++|||.+.++
T Consensus 3 ~~~~kVlVa~SGGvDSsv~a~lL~~--~---G~eV~av~~~~~~~e~~~a~~va~~LGI~~~vvd 62 (362)
T PRK14664 3 ESKKRVLVGMSGGIDSTATCLMLQE--Q---GYEIVGVTMRVWGDEPQDARELAARMGIEHYVAD 62 (362)
T ss_pred CCCCEEEEEEeCCHHHHHHHHHHHH--c---CCcEEEEEecCcchhHHHHHHHHHHhCCCEEEEe
Confidence 34579999999974 3 33334432 2 3678887765422122457899999999998876
No 75
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=67.07 E-value=25 Score=32.10 Aligned_cols=68 Identities=13% Similarity=0.242 Sum_probs=37.0
Q ss_pred CceEEEEEECC-chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCCC
Q 024063 46 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 124 (273)
Q Consensus 46 ~~kiav~~Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~D 124 (273)
++||+|+|.|. |.. +...+.+.....++++|+ +++ .....+++++.|.+.+. + .+++ +.++|
T Consensus 1 mmrIgIIG~G~iG~~---ia~~l~~~~~~~elv~v~-d~~---~~~a~~~a~~~~~~~~~--~-----~~el---l~~~D 63 (265)
T PRK13304 1 MLKIGIVGCGAIASL---ITKAILSGRINAELYAFY-DRN---LEKAENLASKTGAKACL--S-----IDEL---VEDVD 63 (265)
T ss_pred CCEEEEECccHHHHH---HHHHHHcCCCCeEEEEEE-CCC---HHHHHHHHHhcCCeeEC--C-----HHHH---hcCCC
Confidence 47999999875 332 223322222246777665 442 22345666777766431 1 1222 24778
Q ss_pred EEEEEe
Q 024063 125 FLVLAR 130 (273)
Q Consensus 125 lvv~ag 130 (273)
+|+.+.
T Consensus 64 vVvi~a 69 (265)
T PRK13304 64 LVVECA 69 (265)
T ss_pred EEEEcC
Confidence 887765
No 76
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=67.01 E-value=5.7 Score=32.79 Aligned_cols=36 Identities=19% Similarity=0.293 Sum_probs=23.5
Q ss_pred CCCCceEEEEEECC-chhHHHHHHhhhcCCCCceEEEEeeCC
Q 024063 43 IDPKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNH 83 (273)
Q Consensus 43 ~~~~~kiav~~Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~ 83 (273)
..+++||+|+|.|+ |++|-..+.. .| ++|.+|.+..
T Consensus 7 ~~~~l~I~iIGaGrVG~~La~aL~~--ag---~~v~~v~srs 43 (127)
T PF10727_consen 7 QAARLKIGIIGAGRVGTALARALAR--AG---HEVVGVYSRS 43 (127)
T ss_dssp -----EEEEECTSCCCCHHHHHHHH--TT---SEEEEESSCH
T ss_pred CCCccEEEEECCCHHHHHHHHHHHH--CC---CeEEEEEeCC
Confidence 34679999999997 7888776654 23 7888887644
No 77
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=66.75 E-value=25 Score=34.81 Aligned_cols=62 Identities=18% Similarity=0.277 Sum_probs=41.0
Q ss_pred CCceEEEEEECCc--hhHHHHHHhhhcCCCCceEEEEeeCCCCCCC-----cHHHHHHHHcCCCEEEEc
Q 024063 45 PKYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPN-----SHVIRFLERHGIPYHYLC 106 (273)
Q Consensus 45 ~~~kiav~~Sg~g--~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~-----~~~~~~a~~~gIp~~~~~ 106 (273)
+..||+|..||+. .+|-.++..++....+.++.++..|+.-..+ ..+.++|+++|||++...
T Consensus 14 ~~~~ilvavSGG~DS~~Ll~~l~~~~~~~~~~~l~a~hvnhglr~~s~~~~~~~~~~~~~l~i~~~~~~ 82 (436)
T PRK10660 14 TSRQILVAFSGGLDSTVLLHLLVQWRTENPGVTLRAIHVHHGLSPNADSWVKHCEQVCQQWQVPLVVER 82 (436)
T ss_pred CCCeEEEEecCCHHHHHHHHHHHHHHHhcCCCeEEEEEEeCCCCcchHHHHHHHHHHHHHcCCcEEEEE
Confidence 4578999999974 3455555444322234688888888743222 346788999999998754
No 78
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=66.60 E-value=27 Score=36.47 Aligned_cols=78 Identities=9% Similarity=0.148 Sum_probs=52.4
Q ss_pred CCceEEEEEECC-ch-hHHHHHHhhhcCCCCceEEEEeeCCCCCCCc----HHHHHHHHc--CCCEEEEcCCCCchHHHH
Q 024063 45 PKYKVAVLASKQ-EH-CLVDFLYGWQEGKLPVEITCVISNHDRGPNS----HVIRFLERH--GIPYHYLCAKENEREEEL 116 (273)
Q Consensus 45 ~~~kiav~~Sg~-g~-~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~----~~~~~a~~~--gIp~~~~~~~~~~~~~~~ 116 (273)
...||+|+|+|. ++ ++..|+.. |- .+|.+|+++.. .++. .+.+.|++. +|++..++. ..++.+
T Consensus 128 R~akVlVlG~Gg~~s~lv~sL~~s---G~--~~I~~vd~D~v-~SNlnRIgEl~e~A~~~n~~v~v~~i~~---~~~~dl 198 (637)
T TIGR03693 128 RNAKILAAGSGDFLTKLVRSLIDS---GF--PRFHAIVTDAE-EHALDRIHELAEIAEETDDALLVQEIDF---AEDQHL 198 (637)
T ss_pred hcccEEEEecCchHHHHHHHHHhc---CC--CcEEEEecccc-chhhhHHHHHHHHHHHhCCCCceEeccC---CcchhH
Confidence 558999999997 44 44555543 52 67878888775 3321 346677664 577776653 235678
Q ss_pred HHHhcCCCEEEEEee
Q 024063 117 LELVQNTDFLVLARY 131 (273)
Q Consensus 117 ~~~l~~~Dlvv~ag~ 131 (273)
.+.++..|+|+.+.=
T Consensus 199 ~ev~~~~DiVi~vsD 213 (637)
T TIGR03693 199 HEAFEPADWVLYVSD 213 (637)
T ss_pred HHhhcCCcEEEEECC
Confidence 888888999998873
No 79
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=66.06 E-value=50 Score=27.65 Aligned_cols=57 Identities=25% Similarity=0.349 Sum_probs=35.9
Q ss_pred eEEEEEECCc--hhHHHHHHhhhcCCCCceEEEEeeCCCCCC-----CcHHHHHHHHcCCCEEEE
Q 024063 48 KVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP-----NSHVIRFLERHGIPYHYL 105 (273)
Q Consensus 48 kiav~~Sg~g--~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~-----~~~~~~~a~~~gIp~~~~ 105 (273)
||+|..||+. +.+-.++...... .+.++.+|..+..-.. ...+.++|+.+|||+..+
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~-~~~~v~~v~id~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 64 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPR-LGLRLVAVHVDHGLRPESDEEAAFVADLCAKLGIPLYIL 64 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHH-cCCcEEEEEecCCCCchHHHHHHHHHHHHHHcCCcEEEE
Confidence 6888999874 3444444443321 1356777766653221 234788999999999876
No 80
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=65.03 E-value=23 Score=31.29 Aligned_cols=69 Identities=17% Similarity=0.233 Sum_probs=35.6
Q ss_pred CceEEEEEECC-chhH-HHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCC
Q 024063 46 KYKVAVLASKQ-EHCL-VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 123 (273)
Q Consensus 46 ~~kiav~~Sg~-g~~l-~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~ 123 (273)
.+||+|+|+|. |+.+ ..++. .+..+.+. .+++++.+ .....+++++.|+... .. ..+.++++
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~---~~~~~~~~-i~~~~~~~--~~~~~~~~~~~~~~~~--~~--------~~~~~~~~ 67 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLK---TSKEYIEE-IIVSNRSN--VEKLDQLQARYNVSTT--TD--------WKQHVTSV 67 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHh---CCCCCcCe-EEEECCCC--HHHHHHHHHHcCcEEe--CC--------hHHHHhcC
Confidence 47999999886 3433 33332 23222231 12344321 1335666667776432 11 12334578
Q ss_pred CEEEEEe
Q 024063 124 DFLVLAR 130 (273)
Q Consensus 124 Dlvv~ag 130 (273)
|+|+++-
T Consensus 68 DiViiav 74 (245)
T PRK07634 68 DTIVLAM 74 (245)
T ss_pred CEEEEec
Confidence 9998874
No 81
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=64.49 E-value=78 Score=31.70 Aligned_cols=92 Identities=16% Similarity=0.155 Sum_probs=56.7
Q ss_pred CCCCCCceEEEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCCCc-----HHHHHHHHcC-CCEEEEcCCCCc---
Q 024063 41 PDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNS-----HVIRFLERHG-IPYHYLCAKENE--- 111 (273)
Q Consensus 41 ~~~~~~~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~-----~~~~~a~~~g-Ip~~~~~~~~~~--- 111 (273)
|-+..+.+|+|+.|.+|..+++++.-+.+-....+|. |+.-.-.+.++ ..++.|.+.+ +-+..+.+-.++
T Consensus 130 pLP~~p~~IGVITS~tgAairDIl~~~~rR~P~~~vi-v~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGGGSiED 208 (440)
T COG1570 130 PLPFFPKKIGVITSPTGAALRDILHTLSRRFPSVEVI-VYPTLVQGEGAAEEIVEAIERANQRGDVDVLIVARGGGSIED 208 (440)
T ss_pred CCCCCCCeEEEEcCCchHHHHHHHHHHHhhCCCCeEE-EEeccccCCCcHHHHHHHHHHhhccCCCCEEEEecCcchHHH
Confidence 4455679999999999999999998776654446654 22222222222 2455565655 667766643221
Q ss_pred ----hHHHHHHHhcCCCEEEEEeecC
Q 024063 112 ----REEELLELVQNTDFLVLARYMQ 133 (273)
Q Consensus 112 ----~~~~~~~~l~~~Dlvv~ag~~~ 133 (273)
++|.+.+.+..+.+=|+.+-+|
T Consensus 209 LW~FNdE~vaRAi~~s~iPvISAVGH 234 (440)
T COG1570 209 LWAFNDEIVARAIAASRIPVISAVGH 234 (440)
T ss_pred HhccChHHHHHHHHhCCCCeEeeccc
Confidence 3677777776555545566666
No 82
>PRK07574 formate dehydrogenase; Provisional
Probab=62.13 E-value=1.4e+02 Score=29.17 Aligned_cols=160 Identities=14% Similarity=0.188 Sum_probs=87.4
Q ss_pred ceEEEEEECC-chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCCCE
Q 024063 47 YKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDF 125 (273)
Q Consensus 47 ~kiav~~Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~Dl 125 (273)
++|+|+|.|. |..+...+.++ ..+|. +.++... . ....+..|+..+ . ++.++++++|+
T Consensus 193 ktVGIvG~G~IG~~vA~~l~~f-----G~~V~--~~dr~~~-~---~~~~~~~g~~~~--~--------~l~ell~~aDv 251 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLKPF-----DVKLH--YTDRHRL-P---EEVEQELGLTYH--V--------SFDSLVSVCDV 251 (385)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-----CCEEE--EECCCCC-c---hhhHhhcCceec--C--------CHHHHhhcCCE
Confidence 7899999886 55555555442 35553 3343211 1 123344554321 1 24456678999
Q ss_pred EEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCCCCCCCCC----hHHHHHHHhC
Q 024063 126 LVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG----KPAKQAFDAG 201 (273)
Q Consensus 126 vv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~----~p~~~ai~~G 201 (273)
|+++- |+.++ -++++..+.++..+.+.+=+=-| ||. ..+..|+.+|
T Consensus 252 V~l~l-----Plt~~--------------------T~~li~~~~l~~mk~ga~lIN~a-----RG~iVDe~AL~~AL~sG 301 (385)
T PRK07574 252 VTIHC-----PLHPE--------------------TEHLFDADVLSRMKRGSYLVNTA-----RGKIVDRDAVVRALESG 301 (385)
T ss_pred EEEcC-----CCCHH--------------------HHHHhCHHHHhcCCCCcEEEECC-----CCchhhHHHHHHHHHhC
Confidence 98764 32111 12378888999888774433333 773 5677888888
Q ss_pred CC-EeEEEEEEecCccCCCCeeEEEEEecCCCCCHHH--HHHHHHHHHHHHHHHHHHHHHhCC
Q 024063 202 VK-LIGATSHFVTEELDAGPIIEQMVERVSHRDNLRT--FVQKSEDVEKQCLAKAIKSYCELR 261 (273)
Q Consensus 202 ~~-~~GvT~H~~~~~~D~G~Ii~Q~~~~I~~~dt~~~--L~~rl~~~~~~ll~~~i~~l~~g~ 261 (273)
.- ..|.-|+.-.+-...-+......+-+.|+-...+ -.+++ .+...+.+..+.+|+
T Consensus 302 ~i~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~T~e~~~~~----~~~~~~ni~~~~~G~ 360 (385)
T PRK07574 302 HLAGYAGDVWFPQPAPADHPWRTMPRNGMTPHISGTTLSAQARY----AAGTREILECFFEGR 360 (385)
T ss_pred CccEEEEecCCCCCCCCCChHHhCCCeEECCccccCcHHHHHHH----HHHHHHHHHHHHcCC
Confidence 63 3455555554443444555555666666544333 23333 334555666666665
No 83
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=61.54 E-value=24 Score=34.26 Aligned_cols=55 Identities=22% Similarity=0.199 Sum_probs=32.2
Q ss_pred ceEEEEEECCc-hhHHH-HHHhhhcCCCCceEEEEeeCCCCCC-C-----------cHHHHHHHHcCCCEEEEc
Q 024063 47 YKVAVLASKQE-HCLVD-FLYGWQEGKLPVEITCVISNHDRGP-N-----------SHVIRFLERHGIPYHYLC 106 (273)
Q Consensus 47 ~kiav~~Sg~g-~~l~~-ll~~~~~~~l~~~i~~Vvs~~~~~~-~-----------~~~~~~a~~~gIp~~~~~ 106 (273)
+||+|..||+- |...| ||.. .| ++|++|....-+.. . ..+.+.|+..|||++.++
T Consensus 1 ~kV~vamSGGVDSsvaA~LLk~--~G---~~V~Gv~m~~~~~~~~~~~~c~~~~d~~~a~~va~~LgIp~~v~d 69 (356)
T PF03054_consen 1 KKVLVAMSGGVDSSVAAALLKE--QG---YDVIGVTMRNWDEEDESGKSCCSEEDIEDARRVAEKLGIPHYVVD 69 (356)
T ss_dssp -EEEEE--SSHHHHHHHHHHHH--CT----EEEEEEEE-SS-SSSHH-HHHHHHHHHHHHHHHHHHT--EEEEE
T ss_pred CeEEEEccCCHHHHHHHHHHHh--hc---ccceEEEEEEeccccccCCCCCchhhHHHHHHHHHhcCCCEEEEC
Confidence 69999999974 55444 4442 34 89998876442221 1 237888999999999987
No 84
>PLN02928 oxidoreductase family protein
Probab=61.40 E-value=1e+02 Score=29.40 Aligned_cols=113 Identities=17% Similarity=0.187 Sum_probs=68.9
Q ss_pred HHHHHhcCCCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCCCCCCCCC---
Q 024063 115 ELLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG--- 191 (273)
Q Consensus 115 ~~~~~l~~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~--- 191 (273)
++.+++.++|+|+++- |+. ---++++..+.++..+.+.+=+--| ||.
T Consensus 219 ~L~ell~~aDiVvl~l-----Plt--------------------~~T~~li~~~~l~~Mk~ga~lINva-----RG~lVd 268 (347)
T PLN02928 219 DIYEFAGEADIVVLCC-----TLT--------------------KETAGIVNDEFLSSMKKGALLVNIA-----RGGLLD 268 (347)
T ss_pred CHHHHHhhCCEEEECC-----CCC--------------------hHhhcccCHHHHhcCCCCeEEEECC-----CccccC
Confidence 4566777899998753 211 1123589999999998875555545 774
Q ss_pred -hHHHHHHHhCCC-EeEEEEEEecCccCCCCeeEEEEEecCCCCCHHH--HHHHHHHHHHHHHHHHHHHHHhCC
Q 024063 192 -KPAKQAFDAGVK-LIGATSHFVTEELDAGPIIEQMVERVSHRDNLRT--FVQKSEDVEKQCLAKAIKSYCELR 261 (273)
Q Consensus 192 -~p~~~ai~~G~~-~~GvT~H~~~~~~D~G~Ii~Q~~~~I~~~dt~~~--L~~rl~~~~~~ll~~~i~~l~~g~ 261 (273)
..+..|+.+|.- ..|.-++..++--...+.+....+-+.|+....+ -.+++ .+++.+.+..+.+|+
T Consensus 269 e~AL~~AL~~g~i~gAaLDV~~~EP~~~~~pL~~~~nviiTPHia~~t~~~~~~~----~~~~~~nl~~~~~g~ 338 (347)
T PLN02928 269 YDAVLAALESGHLGGLAIDVAWSEPFDPDDPILKHPNVIITPHVAGVTEYSYRSM----GKIVGDAALQLHAGR 338 (347)
T ss_pred HHHHHHHHHcCCeeEEEEccCCCCCCCCCChhhcCCCEEECCcCCCChHHHHHHH----HHHHHHHHHHHHCCC
Confidence 567888888863 2444555444433334666666777777654322 22333 344556667777775
No 85
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=61.32 E-value=22 Score=30.13 Aligned_cols=58 Identities=21% Similarity=0.301 Sum_probs=35.6
Q ss_pred eEEEEEECCc--hhHHHHHHhhhcCCCCceEEEEeeCCCCCC-----CcHHHHHHHHcCCCEEEEc
Q 024063 48 KVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP-----NSHVIRFLERHGIPYHYLC 106 (273)
Q Consensus 48 kiav~~Sg~g--~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~-----~~~~~~~a~~~gIp~~~~~ 106 (273)
||+|..||+. +.+-.++...... .+.++.+|..+..-.. ...+.++|+++|||+..+.
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~-~~~~v~~v~vd~g~~~~~~~~~~~~~~~~~~~gi~~~~~~ 65 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPK-LKIRLIAAHVDHGLRPESDEEAEFVQQFCKKLNIPLEIKK 65 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHH-cCCCEEEEEeCCCCChhHHHHHHHHHHHHHHcCCCEEEEE
Confidence 6888889874 3444444433211 2346777765543211 2457899999999988775
No 86
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=61.26 E-value=63 Score=30.98 Aligned_cols=56 Identities=25% Similarity=0.380 Sum_probs=34.1
Q ss_pred HhcCCCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhh-cCCCeeEeecCCCCCCCC
Q 024063 119 LVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRS-YGKDVINIHHGLLPSFKG 190 (273)
Q Consensus 119 ~l~~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~-~~~~~iNiHpslLP~yRG 190 (273)
.+.+.|++.+-+ +|+|++-|-.+... +.-||. +-...++. .+.+++-+||+ |-.||
T Consensus 221 ~i~~~DVl~~lR------vQ~ER~~~~~~~s~------~~~y~~--~~~~~~~~~~k~~~ivmHP~--PvnR~ 277 (316)
T COG0540 221 VIEEADVLYMLR------VQKERFNDPEEYSK------VKEYYK--LYGLTLERLAKPDAIVMHPL--PVNRV 277 (316)
T ss_pred hhccCCEEEeeh------hhHhhcCCccchHH------HHHHHH--HHHHHHHhhcCCCcEEECCC--CccCC
Confidence 445678885432 68888877433321 223333 22344555 77789999997 77776
No 87
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=61.21 E-value=32 Score=30.91 Aligned_cols=33 Identities=21% Similarity=0.403 Sum_probs=21.8
Q ss_pred ceEEEEE-ECC-chhHHHHHHhhhcCCCCceEEEEeeCCC
Q 024063 47 YKVAVLA-SKQ-EHCLVDFLYGWQEGKLPVEITCVISNHD 84 (273)
Q Consensus 47 ~kiav~~-Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~~ 84 (273)
||||+++ ||. |+-+ +-++.++| +++++++-|+.
T Consensus 1 mKIaiIgAsG~~Gs~i--~~EA~~RG---HeVTAivRn~~ 35 (211)
T COG2910 1 MKIAIIGASGKAGSRI--LKEALKRG---HEVTAIVRNAS 35 (211)
T ss_pred CeEEEEecCchhHHHH--HHHHHhCC---CeeEEEEeChH
Confidence 6999998 555 4432 22344444 89999998763
No 88
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=61.20 E-value=38 Score=31.16 Aligned_cols=69 Identities=14% Similarity=0.167 Sum_probs=38.3
Q ss_pred CceEEEEEECC-chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCCC
Q 024063 46 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 124 (273)
Q Consensus 46 ~~kiav~~Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~D 124 (273)
++||+++|.|. |..+ .+.+..+..++++++|.... .....++++++|++..+ . ..++ ++.++|
T Consensus 6 ~irIGIIG~G~IG~~~---a~~L~~~~~~~el~aV~dr~----~~~a~~~a~~~g~~~~~-~-----~~ee---ll~~~D 69 (271)
T PRK13302 6 ELRVAIAGLGAIGKAI---AQALDRGLPGLTLSAVAVRD----PQRHADFIWGLRRPPPV-V-----PLDQ---LATHAD 69 (271)
T ss_pred eeEEEEECccHHHHHH---HHHHHhcCCCeEEEEEECCC----HHHHHHHHHhcCCCccc-C-----CHHH---HhcCCC
Confidence 48999999986 3332 22222221246777665432 22356777888865332 1 1122 234788
Q ss_pred EEEEEe
Q 024063 125 FLVLAR 130 (273)
Q Consensus 125 lvv~ag 130 (273)
+|+.+.
T Consensus 70 ~Vvi~t 75 (271)
T PRK13302 70 IVVEAA 75 (271)
T ss_pred EEEECC
Confidence 888775
No 89
>PRK10126 tyrosine phosphatase; Provisional
Probab=59.67 E-value=27 Score=29.02 Aligned_cols=80 Identities=16% Similarity=0.216 Sum_probs=44.3
Q ss_pred ceEEEEEECCc--hhH-HHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCC
Q 024063 47 YKVAVLASKQE--HCL-VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 123 (273)
Q Consensus 47 ~kiav~~Sg~g--~~l-~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~ 123 (273)
+||.|+..|+. |.+ ++++.... +.+.+.-.++.....++.+....+.++++||+......+ ...+ +.++++
T Consensus 3 ~~iLFVC~gN~cRSpmAEa~~~~~~-~~~~v~SAG~~~~~g~~~~~~a~~~l~~~Gid~~~h~sr-~lt~----~~~~~~ 76 (147)
T PRK10126 3 NNILVVCVGNICRSPTAERLLQRYH-PELKVESAGLGALVGKGADPTAISVAAEHQLSLEGHCAR-QISR----RLCRNY 76 (147)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhc-CCeEEEeeeccCCCCCCCCHHHHHHHHHcCCCcCCCccc-cCCH----HHhccC
Confidence 68888777763 444 45665432 223333344433233345677889999999997421111 1111 133488
Q ss_pred CEEEEEeec
Q 024063 124 DFLVLARYM 132 (273)
Q Consensus 124 Dlvv~ag~~ 132 (273)
|+|+...-.
T Consensus 77 DlIl~Md~~ 85 (147)
T PRK10126 77 DLILTMEKR 85 (147)
T ss_pred CEEEECCHH
Confidence 999977533
No 90
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=59.22 E-value=48 Score=25.14 Aligned_cols=51 Identities=16% Similarity=0.203 Sum_probs=28.7
Q ss_pred HHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHh
Q 024063 63 FLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELV 120 (273)
Q Consensus 63 ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l 120 (273)
.++++++|+ +..+.+-.|-+...-..+..+|++++||+..++.+ +|+=..+
T Consensus 19 v~kai~~gk--aklViiA~D~~~~~~~~i~~~c~~~~Vp~~~~~s~-----~eLG~a~ 69 (82)
T PRK13602 19 TVKALKRGS--VKEVVVAEDADPRLTEKVEALANEKGVPVSKVDSM-----KKLGKAC 69 (82)
T ss_pred HHHHHHcCC--eeEEEEECCCCHHHHHHHHHHHHHcCCCEEEECCH-----HHHHHHH
Confidence 344445553 44443333332111245788899999999987632 4555555
No 91
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=57.28 E-value=62 Score=30.52 Aligned_cols=114 Identities=12% Similarity=0.051 Sum_probs=70.5
Q ss_pred HHHHHhcCCCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCCCCCCCCC---
Q 024063 115 ELLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG--- 191 (273)
Q Consensus 115 ~~~~~l~~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~--- 191 (273)
++.++++++|+|+++- |+.+ .-++++..+.++..+.+.+=+--| ||.
T Consensus 183 ~l~e~l~~aDvvv~~l-----Plt~--------------------~T~~li~~~~l~~mk~ga~lIN~a-----RG~vVd 232 (312)
T PRK15469 183 ELSAFLSQTRVLINLL-----PNTP--------------------ETVGIINQQLLEQLPDGAYLLNLA-----RGVHVV 232 (312)
T ss_pred cHHHHHhcCCEEEECC-----CCCH--------------------HHHHHhHHHHHhcCCCCcEEEECC-----CccccC
Confidence 4666777999998753 3221 122367778888887765444433 774
Q ss_pred -hHHHHHHHhCCC-EeEEEEEEecCccCCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Q 024063 192 -KPAKQAFDAGVK-LIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRV 262 (273)
Q Consensus 192 -~p~~~ai~~G~~-~~GvT~H~~~~~~D~G~Ii~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~i~~l~~g~~ 262 (273)
..+..|+.+|.- ..|.-++.-++--+..+++....+-+.|+....+-..+ ..+.+.+.++.+.+|+-
T Consensus 233 e~aL~~aL~~g~i~gaalDVf~~EPl~~~~pl~~~~nvi~TPHiag~t~~~~----~~~~~~~n~~~~~~g~~ 301 (312)
T PRK15469 233 EDDLLAALDSGKVKGAMLDVFSREPLPPESPLWQHPRVAITPHVAAVTRPAE----AVEYISRTIAQLEKGER 301 (312)
T ss_pred HHHHHHHHhcCCeeeEEecCCCCCCCCCCChhhcCCCeEECCcCCCCcCHHH----HHHHHHHHHHHHHcCCC
Confidence 567888888863 23445555544444456666666777776544443322 35667788888888874
No 92
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=56.26 E-value=21 Score=27.61 Aligned_cols=43 Identities=16% Similarity=0.278 Sum_probs=27.3
Q ss_pred HHHHHhhhcCCCCceEEEEeeCCCCCC--CcHHHHHHHHcCCCEEEEcC
Q 024063 61 VDFLYGWQEGKLPVEITCVISNHDRGP--NSHVIRFLERHGIPYHYLCA 107 (273)
Q Consensus 61 ~~ll~~~~~~~l~~~i~~Vvs~~~~~~--~~~~~~~a~~~gIp~~~~~~ 107 (273)
...++++++|. +.. |+-..|-.+ -.++...|+++|||+.++++
T Consensus 19 kqt~Kai~kg~--~~~--v~iA~Da~~~vv~~l~~lceek~Ip~v~V~s 63 (84)
T PRK13600 19 KETLKALKKDQ--VTS--LIIAEDVEVYLMTRVLSQINQKNIPVSFFKS 63 (84)
T ss_pred HHHHHHHhcCC--ceE--EEEeCCCCHHHHHHHHHHHHHcCCCEEEECC
Confidence 34556666664 333 333333222 36789999999999999874
No 93
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase. 1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.
Probab=56.01 E-value=94 Score=30.65 Aligned_cols=55 Identities=5% Similarity=0.108 Sum_probs=36.7
Q ss_pred CceEEEEEECC--chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEc
Q 024063 46 KYKVAVLASKQ--EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 106 (273)
Q Consensus 46 ~~kiav~~Sg~--g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~ 106 (273)
|+||+||||.+ |++.-+++....+ ..+|+++.+++. -.-+.+.|++++-.+..+.
T Consensus 1 Mk~i~IlGsTGSIG~qtL~Vi~~~~~---~f~v~~Laa~~n---~~~L~~q~~~f~p~~v~i~ 57 (389)
T TIGR00243 1 MKQIVILGSTGSIGKSTLDVVRHNPD---HFQVVALSAGKN---VALMVEQILEFRPKFVAID 57 (389)
T ss_pred CceEEEEecChHHHHHHHHHHHhCcc---ccEEEEEEcCCC---HHHHHHHHHHcCCCEEEEc
Confidence 47999999754 4444444544222 489999988762 2347788899987776654
No 94
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=56.00 E-value=99 Score=29.74 Aligned_cols=71 Identities=15% Similarity=0.159 Sum_probs=39.6
Q ss_pred eEEEEEE---------CCchhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcH--H-HHHHHHcCCCEEEEcCCCCchHHH
Q 024063 48 KVAVLAS---------KQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSH--V-IRFLERHGIPYHYLCAKENEREEE 115 (273)
Q Consensus 48 kiav~~S---------g~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~--~-~~~a~~~gIp~~~~~~~~~~~~~~ 115 (273)
|+.||.- |.|+.+..|..+.++|+ .+..+++.. +|...+ . .....+.|||+..+.. ..
T Consensus 147 ~~~ILThcnsg~lat~~~gtal~~l~~A~~~g~---~~~V~v~Es-rP~~qG~rlta~~L~~~GI~vtlI~D------sa 216 (331)
T TIGR00512 147 PLRVLTHCNTGSLATAGYGTALGVIRSAHEKGR---LEHVYADET-RPRLQGARLTAWELVQEGIPATLITD------SM 216 (331)
T ss_pred CceEEeecCCccccccccchHHHHHHHHHHcCC---ceEEEECCC-CchhhHHHHHHHHHHHCCCCEEEEcc------cH
Confidence 5666762 33566666666666664 233344422 222222 2 3446789999998763 23
Q ss_pred HHHHhc--CCCEEEE
Q 024063 116 LLELVQ--NTDFLVL 128 (273)
Q Consensus 116 ~~~~l~--~~Dlvv~ 128 (273)
+...++ ++|.|++
T Consensus 217 v~~~m~~~~vd~Viv 231 (331)
T TIGR00512 217 AAHLMKHGEVDAVIV 231 (331)
T ss_pred HHHHhcccCCCEEEE
Confidence 444555 6888874
No 95
>PF01890 CbiG_C: Cobalamin synthesis G C-terminus; InterPro: IPR002750 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CbiG proteins are specific for anaerobic cobalamin biosynthesis. CbiG, which shows homology with CobE of the aerobic pathway, participates in the conversion of cobalt-precorrin 5 into cobalt-precorrin 6 []. CbiG is responsible for the opening of the delta-lactone ring and extrusion of the C2-unit []. The aerobic pathway uses molecular oxygen to trigger the events at C-20 leading to contraction and expulsion of the C2-unit as acetic acid from a metal-free intermediate, whereas the anaerobic route involves the internal delivery of oxygen from a carboxylic acid terminus to C-20 followed by extrusion of the C2-unit as acetaldehyde, using cobalt complexes as substrates []. This entry represents the core domain of CibG.; GO: 0009236 cobalamin biosynthetic process; PDB: 3BY5_A 2W6K_A 2W6L_A 3EEQ_B.
Probab=55.33 E-value=44 Score=27.12 Aligned_cols=55 Identities=16% Similarity=0.311 Sum_probs=32.6
Q ss_pred EEECCchhHHHH----HHhhhcCCC-CceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEc
Q 024063 52 LASKQEHCLVDF----LYGWQEGKL-PVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 106 (273)
Q Consensus 52 ~~Sg~g~~l~~l----l~~~~~~~l-~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~ 106 (273)
+|+.++...+.+ .+.+++..+ ..+|.++.|-..+..+..++++|+++|+|+..++
T Consensus 6 iGcrr~~~~~~i~~ai~~~l~~~~~~~~~i~~iasi~~K~~E~~l~~~A~~l~~~~~~~~ 65 (121)
T PF01890_consen 6 IGCRRGAPAEEIEEAIEQALAEAGLSPRSIAAIASIDIKADEPGLLELAEELGIPLRFFS 65 (121)
T ss_dssp EEE-SS--HHHHHHHHHHHHHHCT--GGGEEEEEESSSSS--HHHHHHHHHCTSEEEEE-
T ss_pred eCcCCCCCHHHHHHHHHHHHHHcCCChhhccEEEeccccCCCHHHHHHHHHhCCCeEEEC
Confidence 344455443333 334444444 3678878776555556789999999999999886
No 96
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=54.51 E-value=48 Score=30.65 Aligned_cols=80 Identities=10% Similarity=0.136 Sum_probs=43.5
Q ss_pred CceEEEEEECCchhH---HHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCC----Cch-----H
Q 024063 46 KYKVAVLASKQEHCL---VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE----NER-----E 113 (273)
Q Consensus 46 ~~kiav~~Sg~g~~l---~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~----~~~-----~ 113 (273)
|+||.+.+.|.|... .+|.+.+.+. .+++..+ +.... ......+++|++++.++... +.. .
T Consensus 1 ~~~i~i~~~g~gG~~~~~~~la~~L~~~--g~ev~vv-~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~ 73 (357)
T PRK00726 1 MKKILLAGGGTGGHVFPALALAEELKKR--GWEVLYL-GTARG----MEARLVPKAGIEFHFIPSGGLRRKGSLANLKAP 73 (357)
T ss_pred CcEEEEEcCcchHhhhHHHHHHHHHHhC--CCEEEEE-ECCCc----hhhhccccCCCcEEEEeccCcCCCChHHHHHHH
Confidence 478888876655332 3566655442 3777644 44321 12334455799998876311 100 0
Q ss_pred -------HHHHHHhc--CCCEEEEEeec
Q 024063 114 -------EELLELVQ--NTDFLVLARYM 132 (273)
Q Consensus 114 -------~~~~~~l~--~~Dlvv~ag~~ 132 (273)
..+.+.++ ++|+|++.++.
T Consensus 74 ~~~~~~~~~~~~~ik~~~pDvv~~~~~~ 101 (357)
T PRK00726 74 FKLLKGVLQARKILKRFKPDVVVGFGGY 101 (357)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEECCCc
Confidence 12233444 69999988743
No 97
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=53.88 E-value=98 Score=28.29 Aligned_cols=80 Identities=19% Similarity=0.257 Sum_probs=47.9
Q ss_pred eEEEEEEC-----CchhHHH--HHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCC--chHHHHHH
Q 024063 48 KVAVLASK-----QEHCLVD--FLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKEN--EREEELLE 118 (273)
Q Consensus 48 kiav~~Sg-----~g~~l~~--ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~--~~~~~~~~ 118 (273)
||+|.+-+ .||.++. |.+++++. .+++..+.... .....+..++.|.++..++...+ ...+++.+
T Consensus 1 ~i~ir~Da~~~iG~GHv~Rcl~LA~~l~~~--g~~v~f~~~~~----~~~~~~~i~~~g~~v~~~~~~~~~~~d~~~~~~ 74 (279)
T TIGR03590 1 KILFRADASSEIGLGHVMRCLTLARALHAQ--GAEVAFACKPL----PGDLIDLLLSAGFPVYELPDESSRYDDALELIN 74 (279)
T ss_pred CEEEEecCCccccccHHHHHHHHHHHHHHC--CCEEEEEeCCC----CHHHHHHHHHcCCeEEEecCCCchhhhHHHHHH
Confidence 45555532 3564443 44555321 36776555433 23456788899999988763211 12346777
Q ss_pred Hhc--CCCEEEEEeecC
Q 024063 119 LVQ--NTDFLVLARYMQ 133 (273)
Q Consensus 119 ~l~--~~Dlvv~ag~~~ 133 (273)
.++ ++|++|+=+|.-
T Consensus 75 ~l~~~~~d~vV~D~y~~ 91 (279)
T TIGR03590 75 LLEEEKFDILIVDHYGL 91 (279)
T ss_pred HHHhcCCCEEEEcCCCC
Confidence 776 799999999854
No 98
>TIGR02689 ars_reduc_gluta arsenate reductase, glutathione/glutaredoxin type. Members of this protein family represent a novel form of arsenate reductase, using glutathione and glutaredoxin rather than thioredoxin for reducing equivalents as do some homologous arsenate reductases. An example of this type is Synechocystis sp. strain PCC 6803 slr0946, and of latter type (excluded from this model) is Staphylococcus aureus plasmid pI258 ArsC. Both are among the subset of arsenate reductases that belong the the low-molecular-weight protein-tyrosine phosphatase superfamily.
Probab=53.71 E-value=26 Score=28.26 Aligned_cols=76 Identities=13% Similarity=0.114 Sum_probs=39.9
Q ss_pred ceEEEEEECCc--hhH-HHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCC
Q 024063 47 YKVAVLASKQE--HCL-VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 123 (273)
Q Consensus 47 ~kiav~~Sg~g--~~l-~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~ 123 (273)
+||.|+..|+. |.+ +++++....+.+.+.-.++-. .+.+....+.++++||++.....+ ...+. .++++
T Consensus 1 ~~vlfvC~~N~cRS~mAEa~~~~~~~~~~~v~SAG~~~---~~~~p~a~~~l~e~Gid~~~~~s~-~l~~~----~~~~~ 72 (126)
T TIGR02689 1 KKVMFVCKRNSCRSQMAEGFAKTLGAGNIAVTSAGLEV---SRVHPTAIEVMSEIGIDISGQTSK-PLENF----HPEDY 72 (126)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHhcCCCEEEEcCcCCC---CCCCHHHHHHHHHhCCCcccCccc-cCChh----HhcCC
Confidence 46777776663 333 556665433322112122221 234566788899999997531111 11111 23478
Q ss_pred CEEEEEe
Q 024063 124 DFLVLAR 130 (273)
Q Consensus 124 Dlvv~ag 130 (273)
|+||...
T Consensus 73 D~iitm~ 79 (126)
T TIGR02689 73 DVVISLC 79 (126)
T ss_pred CEEEEeC
Confidence 9999764
No 99
>PRK14561 hypothetical protein; Provisional
Probab=53.67 E-value=31 Score=30.13 Aligned_cols=54 Identities=20% Similarity=0.160 Sum_probs=31.8
Q ss_pred ceEEEEEECCc-h-hHHHHHHhhhcCCCCceEEEEeeCCC-CCCCcHHHHHHHHcCCCEEEEc
Q 024063 47 YKVAVLASKQE-H-CLVDFLYGWQEGKLPVEITCVISNHD-RGPNSHVIRFLERHGIPYHYLC 106 (273)
Q Consensus 47 ~kiav~~Sg~g-~-~l~~ll~~~~~~~l~~~i~~Vvs~~~-~~~~~~~~~~a~~~gIp~~~~~ 106 (273)
|||+|+.||+- | .+..++... .++.++-.+.. ......+...|++.|+|...++
T Consensus 1 mkV~ValSGG~DSslll~~l~~~------~~v~a~t~~~g~~~e~~~a~~~a~~lGi~~~~v~ 57 (194)
T PRK14561 1 MKAGVLFSGGKDSSLAAILLERF------YDVELVTVNFGVLDSWKHAREAAKALGFPHRVLE 57 (194)
T ss_pred CEEEEEEechHHHHHHHHHHHhc------CCeEEEEEecCchhHHHHHHHHHHHhCCCEEEEE
Confidence 68999999963 3 333333321 23443322221 1112457889999999998876
No 100
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=53.19 E-value=50 Score=32.16 Aligned_cols=57 Identities=25% Similarity=0.285 Sum_probs=39.8
Q ss_pred CCceEEEEEECCc-hhHHH-HHHhhhcCCCCceEEEEeeCC-C-CCC-C-------cHHHHHHHHcCCCEEEEc
Q 024063 45 PKYKVAVLASKQE-HCLVD-FLYGWQEGKLPVEITCVISNH-D-RGP-N-------SHVIRFLERHGIPYHYLC 106 (273)
Q Consensus 45 ~~~kiav~~Sg~g-~~l~~-ll~~~~~~~l~~~i~~Vvs~~-~-~~~-~-------~~~~~~a~~~gIp~~~~~ 106 (273)
.++||+|..||+- |.+.+ ||.. .| ++|.+|.-.. + +.. . ..+.+.|...|||++.++
T Consensus 2 ~~~kV~v~mSGGVDSSVaA~lLk~--QG---yeViGl~m~~~~~~~~~~C~s~~d~~da~~va~~LGIp~~~vd 70 (356)
T COG0482 2 KKKKVLVGMSGGVDSSVAAYLLKE--QG---YEVIGLFMKNWDEDGGGGCCSEEDLRDAERVADQLGIPLYVVD 70 (356)
T ss_pred CCcEEEEEccCCHHHHHHHHHHHH--cC---CeEEEEEEEeeccCCCCcCCchhHHHHHHHHHHHhCCceEEEc
Confidence 4689999999974 55544 5543 23 8999987644 2 111 1 248899999999999987
No 101
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=52.53 E-value=73 Score=30.82 Aligned_cols=59 Identities=19% Similarity=0.090 Sum_probs=37.9
Q ss_pred CCCceEEEEEECCc-h-hHHHHHHhhhcCCCCceEEEEeeCC-CCC-CC---cHHHHHHHHcCCCEEEEcC
Q 024063 44 DPKYKVAVLASKQE-H-CLVDFLYGWQEGKLPVEITCVISNH-DRG-PN---SHVIRFLERHGIPYHYLCA 107 (273)
Q Consensus 44 ~~~~kiav~~Sg~g-~-~l~~ll~~~~~~~l~~~i~~Vvs~~-~~~-~~---~~~~~~a~~~gIp~~~~~~ 107 (273)
.+..||+|..||+- | .+..++.. . ..++.+|..+. +.. .. ..+.++|+++|||++.++-
T Consensus 3 ~~~~kVlValSGGVDSsvaa~LL~~--~---G~~V~~v~~~~~~~~~~~~d~~~a~~va~~LgIp~~vvd~ 68 (360)
T PRK14665 3 EKNKRVLLGMSGGTDSSVAAMLLLE--A---GYEVTGVTFRFYEFNGSTEYLEDARALAERLGIGHITYDA 68 (360)
T ss_pred CCCCEEEEEEcCCHHHHHHHHHHHH--c---CCeEEEEEEecCCCCCChHHHHHHHHHHHHhCCCEEEEec
Confidence 35579999999974 3 34444442 2 36788876543 111 11 2357899999999998763
No 102
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=52.53 E-value=64 Score=28.85 Aligned_cols=67 Identities=15% Similarity=0.213 Sum_probs=46.1
Q ss_pred EEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhc-CCCEEEE
Q 024063 50 AVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ-NTDFLVL 128 (273)
Q Consensus 50 av~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~-~~Dlvv~ 128 (273)
.++|.|+-.+.+.+-.+...| ++ .+||.. .+..+.++|+++|||+..-. ....|+.+.++ .+|++=+
T Consensus 68 ~~vGaGTV~~~~~~~~a~~aG---A~--FivsP~---~~~~v~~~~~~~~i~~iPG~----~T~~E~~~A~~~Gad~vkl 135 (213)
T PRK06552 68 VLIGAGTVLDAVTARLAILAG---AQ--FIVSPS---FNRETAKICNLYQIPYLPGC----MTVTEIVTALEAGSEIVKL 135 (213)
T ss_pred eEEeeeeCCCHHHHHHHHHcC---CC--EEECCC---CCHHHHHHHHHcCCCEECCc----CCHHHHHHHHHcCCCEEEE
Confidence 457777776776666665555 33 366655 45679999999999997432 23456777776 8999875
No 103
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=52.42 E-value=66 Score=26.72 Aligned_cols=59 Identities=19% Similarity=0.175 Sum_probs=35.6
Q ss_pred eEEEEEECCc--hhHHHHHHhhhcC-CCCceEEEEeeCCCCCC-----CcHHHHHHHHcCCCEEEEc
Q 024063 48 KVAVLASKQE--HCLVDFLYGWQEG-KLPVEITCVISNHDRGP-----NSHVIRFLERHGIPYHYLC 106 (273)
Q Consensus 48 kiav~~Sg~g--~~l~~ll~~~~~~-~l~~~i~~Vvs~~~~~~-----~~~~~~~a~~~gIp~~~~~ 106 (273)
||+|..||+. +.+-.++..+... ..+.++.++..++.... ...+.++|+++|+++..+.
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 67 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYPYGFELEALTVDEGIPGYRDESLEVVERLAEELGIELEIVS 67 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEEEECCCCCCcHHHHHHHHHHHHHcCCceEEEe
Confidence 6889999874 3333444433221 11357777766643211 1347788999999998775
No 104
>PRK03868 glucose-6-phosphate isomerase; Provisional
Probab=51.83 E-value=68 Score=31.63 Aligned_cols=61 Identities=10% Similarity=0.103 Sum_probs=37.1
Q ss_pred CCCceEEEEEECCchhHHHHH------HhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCC
Q 024063 44 DPKYKVAVLASKQEHCLVDFL------YGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAK 108 (273)
Q Consensus 44 ~~~~kiav~~Sg~g~~l~~ll------~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~ 108 (273)
++..-+.|++|++|++.+.+. +.++.+.-.+...+++|++ ++++.++|+++|++++.++..
T Consensus 109 ~~~~TlviviSKSGtT~ETl~~~~~~~~~~~~~~~~~~~~v~vTd~----~s~L~~~a~~~g~~~f~ip~~ 175 (410)
T PRK03868 109 NLENTLFIVISKSGTTIETISIFKYLLSHFKLDQELKKNFLFITDP----DSKLEQFAKENNIKCFNIPKN 175 (410)
T ss_pred CCCcEEEEEEeCCCCCHHHHHHHHHHHHHhccccccccEEEEEecC----CchHHHhHHhcCCcEEecCCC
Confidence 445557778899986544332 2221110013344566764 346899999999999887743
No 105
>PRK06487 glycerate dehydrogenase; Provisional
Probab=51.50 E-value=1.9e+02 Score=27.13 Aligned_cols=140 Identities=16% Similarity=0.155 Sum_probs=80.1
Q ss_pred HHHHHHHHcCCCEEEEcCCCCc---hHHHHHHHhcCCCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCC
Q 024063 90 HVIRFLERHGIPYHYLCAKENE---REEELLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILS 166 (273)
Q Consensus 90 ~~~~~a~~~gIp~~~~~~~~~~---~~~~~~~~l~~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~ 166 (273)
.+.++++.+|..+..++..... ...++.++++++|+|++.- |+- -.-++++.
T Consensus 162 ~vA~~l~~fgm~V~~~~~~~~~~~~~~~~l~ell~~sDiv~l~l-----Plt--------------------~~T~~li~ 216 (317)
T PRK06487 162 AVARLAEAFGMRVLIGQLPGRPARPDRLPLDELLPQVDALTLHC-----PLT--------------------EHTRHLIG 216 (317)
T ss_pred HHHHHHhhCCCEEEEECCCCCcccccccCHHHHHHhCCEEEECC-----CCC--------------------hHHhcCcC
Confidence 4566677777777666532110 1124566677899998753 322 12346999
Q ss_pred hhHHhhcCCCeeEeecCCCCCCCCC----hHHHHHHHhCCC-EeEEEEEEecCccCCCCeeE--EEEEecCCCCCHHHHH
Q 024063 167 GKFLRSYGKDVINIHHGLLPSFKGG----KPAKQAFDAGVK-LIGATSHFVTEELDAGPIIE--QMVERVSHRDNLRTFV 239 (273)
Q Consensus 167 ~~~l~~~~~~~iNiHpslLP~yRG~----~p~~~ai~~G~~-~~GvT~H~~~~~~D~G~Ii~--Q~~~~I~~~dt~~~L~ 239 (273)
.+.++..+.+.+=+--| ||. ..+..|+.+|.- ..|.-++.-++-.+..+.+. ...+-+.|+....+..
T Consensus 217 ~~~~~~mk~ga~lIN~a-----RG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pl~~~~~pnvilTPHia~~t~e 291 (317)
T PRK06487 217 ARELALMKPGALLINTA-----RGGLVDEQALADALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTPHSAWGSRE 291 (317)
T ss_pred HHHHhcCCCCeEEEECC-----CccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCCchhhcCCCCEEECCccccCCHH
Confidence 99999998875555444 774 577888888863 23444454444333345553 2456666665432211
Q ss_pred HHHHHHHHHHHHHHHHHHHhCC
Q 024063 240 QKSEDVEKQCLAKAIKSYCELR 261 (273)
Q Consensus 240 ~rl~~~~~~ll~~~i~~l~~g~ 261 (273)
......+++.+.+..+.+|+
T Consensus 292 --~~~~~~~~~~~ni~~~~~g~ 311 (317)
T PRK06487 292 --ARQRIVGQLAENARAFFAGK 311 (317)
T ss_pred --HHHHHHHHHHHHHHHHHcCC
Confidence 12223445556666677775
No 106
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=51.23 E-value=1.2e+02 Score=27.06 Aligned_cols=53 Identities=21% Similarity=0.226 Sum_probs=30.1
Q ss_pred EEEECCc-hhHHHHHHhhhcCCCCceEEEEee-CCCC--------CCCcHHHHHHHHcCCCEEEEcC
Q 024063 51 VLASKQE-HCLVDFLYGWQEGKLPVEITCVIS-NHDR--------GPNSHVIRFLERHGIPYHYLCA 107 (273)
Q Consensus 51 v~~Sg~g-~~l~~ll~~~~~~~l~~~i~~Vvs-~~~~--------~~~~~~~~~a~~~gIp~~~~~~ 107 (273)
++.||+- |++ ++..+.+.| .+++++++ ...+ ..-..+...|+..|||...++.
T Consensus 2 vl~SGGkDS~~-al~~a~~~G---~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~lgip~~~i~~ 64 (218)
T TIGR03679 2 ALYSGGKDSNY-ALYKALEEG---HEVRCLITVVPENEESYMFHTPNIELTRLQAEALGIPLVKIET 64 (218)
T ss_pred eeecCcHHHHH-HHHHHHHcC---CEEEEEEEeccCCCCccccCCCCHHHHHHHHHHhCCCEEEEEC
Confidence 5667754 444 334444444 57765544 2211 0113467889999999987763
No 107
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=50.69 E-value=83 Score=29.32 Aligned_cols=66 Identities=21% Similarity=0.189 Sum_probs=36.8
Q ss_pred CCceEEEEEECC-chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCC
Q 024063 45 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 123 (273)
Q Consensus 45 ~~~kiav~~Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~ 123 (273)
...|++|+|.|. |..+...+.. +.++|. ++++. ..-.+.+++.|..... .+++.+.+.++
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~-----~Ga~V~--v~~r~----~~~~~~~~~~G~~~~~--------~~~l~~~l~~a 211 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKA-----LGANVT--VGARK----SAHLARITEMGLSPFH--------LSELAEEVGKI 211 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHH-----CCCEEE--EEECC----HHHHHHHHHcCCeeec--------HHHHHHHhCCC
Confidence 458999999875 3333333332 235553 33432 1235667777754331 12455566789
Q ss_pred CEEEEE
Q 024063 124 DFLVLA 129 (273)
Q Consensus 124 Dlvv~a 129 (273)
|+||.+
T Consensus 212 DiVI~t 217 (296)
T PRK08306 212 DIIFNT 217 (296)
T ss_pred CEEEEC
Confidence 999875
No 108
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=50.68 E-value=1.9e+02 Score=27.51 Aligned_cols=141 Identities=22% Similarity=0.239 Sum_probs=87.7
Q ss_pred cHHHHHHHHcCCCEEEEcCC-CCch--------HHHHHHHhcCCCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccc
Q 024063 89 SHVIRFLERHGIPYHYLCAK-ENER--------EEELLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTS 159 (273)
Q Consensus 89 ~~~~~~a~~~gIp~~~~~~~-~~~~--------~~~~~~~l~~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 159 (273)
..+.++++..|.++..++.. .... .+++.++|.++|++++. +|+-+|
T Consensus 155 ~~va~~l~afgm~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~lh-----~PlT~e------------------- 210 (324)
T COG0111 155 RAVAKRLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLH-----LPLTPE------------------- 210 (324)
T ss_pred HHHHHHHHhCCCeEEEECCCCchhhhccccceecccHHHHHhhCCEEEEc-----CCCCcc-------------------
Confidence 55778888899998888741 1111 12366677789999864 343322
Q ss_pred cccccCChhHHhhcCCCeeEeecCCCCCCCCC----hHHHHHHHhCCCEeEEEEEEecCc--cCCCCeeEEEEEecCCCC
Q 024063 160 YFNMILSGKFLRSYGKDVINIHHGLLPSFKGG----KPAKQAFDAGVKLIGATSHFVTEE--LDAGPIIEQMVERVSHRD 233 (273)
Q Consensus 160 y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~----~p~~~ai~~G~~~~GvT~H~~~~~--~D~G~Ii~Q~~~~I~~~d 233 (273)
-+++|..+.+++.+.|.+=+.-| ||. ..+..|+.+|. ..|+-+=..+++ -+.=+.+.-..+-+.|+-
T Consensus 211 -T~g~i~~~~~a~MK~gailIN~a-----RG~vVde~aL~~AL~~G~-i~gA~lDVf~~EPl~~~~pL~~~pnV~~TPHi 283 (324)
T COG0111 211 -TRGLINAEELAKMKPGAILINAA-----RGGVVDEDALLAALDSGK-IAGAALDVFEEEPLPADSPLWDLPNVILTPHI 283 (324)
T ss_pred -hhcccCHHHHhhCCCCeEEEECC-----CcceecHHHHHHHHHcCC-cceEEecCCCCCCCCCCChhhcCCCeEECCcc
Confidence 34699999999998887666655 784 57788888886 344444444433 343466666777778876
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Q 024063 234 NLRTFVQKSEDVEKQCLAKAIKSYCELRV 262 (273)
Q Consensus 234 t~~~L~~rl~~~~~~ll~~~i~~l~~g~~ 262 (273)
...|.. ..+...+...+.+.++..|.-
T Consensus 284 a~~T~e--a~~~~~~~~~~~i~~~l~g~~ 310 (324)
T COG0111 284 GGSTDE--AQERVAEIVAENIVRYLAGGP 310 (324)
T ss_pred cccCHH--HHHHHHHHHHHHHHHHHcCCC
Confidence 554442 112223445555555566654
No 109
>PRK06683 hypothetical protein; Provisional
Probab=50.32 E-value=68 Score=24.37 Aligned_cols=58 Identities=17% Similarity=0.217 Sum_probs=32.4
Q ss_pred EEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHh
Q 024063 52 LASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELV 120 (273)
Q Consensus 52 ~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l 120 (273)
+++|.-..+++ +++|+ +..+.|-.+-+......+...|+.++||++.++++ +||=..+
T Consensus 12 ~v~G~~~v~ka----ik~gk--aklViiA~Da~~~~~~~i~~~~~~~~Vpv~~~~t~-----~eLG~A~ 69 (82)
T PRK06683 12 VVVGHKRTLEA----IKNGI--VKEVVIAEDADMRLTHVIIRTALQHNIPITKVESV-----RKLGKVA 69 (82)
T ss_pred EEEcHHHHHHH----HHcCC--eeEEEEECCCCHHHHHHHHHHHHhcCCCEEEECCH-----HHHHHHh
Confidence 44554444444 44453 44443433332222345788899999999987632 4555544
No 110
>PRK13820 argininosuccinate synthase; Provisional
Probab=49.89 E-value=49 Score=32.54 Aligned_cols=58 Identities=17% Similarity=0.011 Sum_probs=37.9
Q ss_pred CceEEEEEECCc--hhHHHHHHhhhcCCCCc-eEEEEeeCCCCCC--CcHHHHHHHHcCCCEEEEcC
Q 024063 46 KYKVAVLASKQE--HCLVDFLYGWQEGKLPV-EITCVISNHDRGP--NSHVIRFLERHGIPYHYLCA 107 (273)
Q Consensus 46 ~~kiav~~Sg~g--~~l~~ll~~~~~~~l~~-~i~~Vvs~~~~~~--~~~~~~~a~~~gIp~~~~~~ 107 (273)
+.||++..||+- +.+..++.. .++. ++.+|..+..... -..+.+.|++.|||++.++.
T Consensus 2 ~~kVvvA~SGGvDSsvll~lL~e----~~g~~~Viav~vd~g~~~~e~~~a~~~a~~lGi~~~vvd~ 64 (394)
T PRK13820 2 MKKVVLAYSGGLDTSVCVPLLKE----KYGYDEVITVTVDVGQPEEEIKEAEEKAKKLGDKHYTIDA 64 (394)
T ss_pred CCeEEEEEeCcHHHHHHHHHHHH----hcCCCEEEEEEEECCCChHHHHHHHHHHHHcCCCEEEEeC
Confidence 468999999963 344444432 1234 7887776653211 13478999999999998773
No 111
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=49.77 E-value=89 Score=29.24 Aligned_cols=69 Identities=12% Similarity=0.172 Sum_probs=37.6
Q ss_pred EEEEC-CchhHHHHHHhhhcCCCCceEEEEeeC-CCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCCCEEEE
Q 024063 51 VLASK-QEHCLVDFLYGWQEGKLPVEITCVISN-HDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVL 128 (273)
Q Consensus 51 v~~Sg-~g~~l~~ll~~~~~~~l~~~i~~Vvs~-~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~Dlvv~ 128 (273)
|+.-+ +++.+..|..+.+.|+ ..+|. ++. ++...+..+.....+.|||+..+... .+...++++|.|++
T Consensus 113 ILTh~~S~tv~~~l~~A~~~gk-~~~V~--v~EsrP~~qG~~la~eL~~~GI~vtlI~Ds------a~~~~m~~vd~Viv 183 (275)
T PRK08335 113 IITHSFSSAVLEILKTAKRKGK-RFKVI--LTESAPDYEGLALANELEFLGIEFEVITDA------QLGLFAKEATLALV 183 (275)
T ss_pred EEEECCcHHHHHHHHHHHHcCC-ceEEE--EecCCCchhHHHHHHHHHHCCCCEEEEecc------HHHHHHHhCCEEEE
Confidence 44433 4566666666666664 24443 332 22222333444456689999987632 23344557888864
No 112
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=49.53 E-value=51 Score=31.96 Aligned_cols=21 Identities=19% Similarity=0.219 Sum_probs=16.5
Q ss_pred CCceEEEEEECC-chhHHHHHH
Q 024063 45 PKYKVAVLASKQ-EHCLVDFLY 65 (273)
Q Consensus 45 ~~~kiav~~Sg~-g~~l~~ll~ 65 (273)
.++||+|+|+|. |+.|..++.
T Consensus 10 ~~~ki~ViGaG~wGtAlA~~l~ 31 (365)
T PTZ00345 10 GPLKVSVIGSGNWGSAISKVVG 31 (365)
T ss_pred CCCeEEEECCCHHHHHHHHHHH
Confidence 458999999997 677776665
No 113
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=48.69 E-value=74 Score=30.41 Aligned_cols=55 Identities=18% Similarity=0.104 Sum_probs=35.3
Q ss_pred ceEEEEEECCc-h-hHHHHHHhhhcCCCCceEEEEeeCCCCC----------C---CcHHHHHHHHcCCCEEEEc
Q 024063 47 YKVAVLASKQE-H-CLVDFLYGWQEGKLPVEITCVISNHDRG----------P---NSHVIRFLERHGIPYHYLC 106 (273)
Q Consensus 47 ~kiav~~Sg~g-~-~l~~ll~~~~~~~l~~~i~~Vvs~~~~~----------~---~~~~~~~a~~~gIp~~~~~ 106 (273)
+||+|..||+- | .+..++.. . ..++.++..+.... . ...+.++|+++|||++.++
T Consensus 1 ~kVlValSGGvDSsvla~lL~~--~---G~~V~~v~~~~~~~~~~~~~~~~~s~~d~~~a~~~a~~LgIp~~vvd 70 (346)
T PRK00143 1 KRVVVGMSGGVDSSVAAALLKE--Q---GYEVIGVFMKLWDDDDETGKGGCCAEEDIADARRVADKLGIPHYVVD 70 (346)
T ss_pred CeEEEEecCCHHHHHHHHHHHH--c---CCcEEEEEEeCCCcccccccCCcCcHHHHHHHHHHHHHcCCcEEEEe
Confidence 48999999974 3 33344432 2 35677776554111 0 1347889999999998876
No 114
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=48.67 E-value=73 Score=25.07 Aligned_cols=55 Identities=13% Similarity=0.218 Sum_probs=35.3
Q ss_pred CceEEEEEECCchh--HHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCC
Q 024063 46 KYKVAVLASKQEHC--LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAK 108 (273)
Q Consensus 46 ~~kiav~~Sg~g~~--l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~ 108 (273)
+.=++|++|.+|.+ ....++.+++. ++.++ ++|+. .++.++|.++|+++..++..
T Consensus 43 ~~dl~I~iS~SG~t~e~i~~~~~a~~~--g~~iI-~IT~~-----~~l~~~~~~~~~~~~~~p~~ 99 (119)
T cd05017 43 RKTLVIAVSYSGNTEETLSAVEQAKER--GAKIV-AITSG-----GKLLEMAREHGVPVIIIPKG 99 (119)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHC--CCEEE-EEeCC-----chHHHHHHHcCCcEEECCCC
Confidence 34588888888753 33444444443 35665 44532 24788999999999988744
No 115
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=48.62 E-value=3e+02 Score=27.81 Aligned_cols=158 Identities=15% Similarity=0.119 Sum_probs=88.4
Q ss_pred CceEEEEEECC-chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCCC
Q 024063 46 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 124 (273)
Q Consensus 46 ~~kiav~~Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~D 124 (273)
.++|+|+|.|. |..+...+.++ ..+|. +.++.. . .+.+...|+... ++.++++++|
T Consensus 140 gktvgIiG~G~IG~~vA~~l~~f-----G~~V~--~~d~~~---~--~~~~~~~g~~~~-----------~l~ell~~aD 196 (526)
T PRK13581 140 GKTLGIIGLGRIGSEVAKRAKAF-----GMKVI--AYDPYI---S--PERAAQLGVELV-----------SLDELLARAD 196 (526)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-----CCEEE--EECCCC---C--hhHHHhcCCEEE-----------cHHHHHhhCC
Confidence 47899999887 55555555542 35553 223311 1 233455665332 1345566899
Q ss_pred EEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCe--eEeecCCCCCCCCC----hHHHHHH
Q 024063 125 FLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDV--INIHHGLLPSFKGG----KPAKQAF 198 (273)
Q Consensus 125 lvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~--iNiHpslLP~yRG~----~p~~~ai 198 (273)
+|+++- |+. -.-++++..+.++..+.+. ||. -||. ..+..|+
T Consensus 197 iV~l~l-----P~t--------------------~~t~~li~~~~l~~mk~ga~lIN~-------aRG~~vde~aL~~aL 244 (526)
T PRK13581 197 FITLHT-----PLT--------------------PETRGLIGAEELAKMKPGVRIINC-------ARGGIIDEAALAEAL 244 (526)
T ss_pred EEEEcc-----CCC--------------------hHhhcCcCHHHHhcCCCCeEEEEC-------CCCceeCHHHHHHHH
Confidence 998753 221 1123478888898887664 554 4673 5678888
Q ss_pred HhCCC-EeEEEEEEecCccCCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 024063 199 DAGVK-LIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELR 261 (273)
Q Consensus 199 ~~G~~-~~GvT~H~~~~~~D~G~Ii~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~i~~l~~g~ 261 (273)
.+|.- ..|.-++..++-.| -+.+....+-+.|+....+... .....+.+.+.+..+.+|+
T Consensus 245 ~~g~i~gAaLDVf~~EP~~~-~pL~~~~nvilTPHia~~t~e~--~~~~~~~~~~ni~~~~~g~ 305 (526)
T PRK13581 245 KSGKVAGAALDVFEKEPPTD-SPLFELPNVVVTPHLGASTAEA--QENVAIQVAEQVIDALRGG 305 (526)
T ss_pred hcCCeeEEEEecCCCCCCCC-chhhcCCCeeEcCccccchHHH--HHHHHHHHHHHHHHHHcCC
Confidence 88863 23344444444333 3565556777777655433322 2233445556666666665
No 116
>PLN03139 formate dehydrogenase; Provisional
Probab=48.60 E-value=2.7e+02 Score=27.24 Aligned_cols=164 Identities=11% Similarity=0.135 Sum_probs=90.4
Q ss_pred CceEEEEEECC-chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCCC
Q 024063 46 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 124 (273)
Q Consensus 46 ~~kiav~~Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~D 124 (273)
-++|+|+|.|. |..+...+..+ ..+|. +.++... . .+.+++.|+... . ++.+++.++|
T Consensus 199 gktVGIVG~G~IG~~vA~~L~af-----G~~V~--~~d~~~~-~---~~~~~~~g~~~~--~--------~l~ell~~sD 257 (386)
T PLN03139 199 GKTVGTVGAGRIGRLLLQRLKPF-----NCNLL--YHDRLKM-D---PELEKETGAKFE--E--------DLDAMLPKCD 257 (386)
T ss_pred CCEEEEEeecHHHHHHHHHHHHC-----CCEEE--EECCCCc-c---hhhHhhcCceec--C--------CHHHHHhhCC
Confidence 37899999887 55555555432 35653 3343211 1 123344554321 1 2445566899
Q ss_pred EEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCCCCCCCCC----hHHHHHHHh
Q 024063 125 FLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG----KPAKQAFDA 200 (273)
Q Consensus 125 lvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~----~p~~~ai~~ 200 (273)
+|++.- |+.++ -++++..+.++..+.+.+=+=-| ||. ..+..|+.+
T Consensus 258 vV~l~l-----Plt~~--------------------T~~li~~~~l~~mk~ga~lIN~a-----RG~iVDe~AL~~AL~s 307 (386)
T PLN03139 258 VVVINT-----PLTEK--------------------TRGMFNKERIAKMKKGVLIVNNA-----RGAIMDTQAVADACSS 307 (386)
T ss_pred EEEEeC-----CCCHH--------------------HHHHhCHHHHhhCCCCeEEEECC-----CCchhhHHHHHHHHHc
Confidence 998753 32211 12377888898887774444333 774 567788888
Q ss_pred CCC-EeEEEEEEecCccCCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Q 024063 201 GVK-LIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRV 262 (273)
Q Consensus 201 G~~-~~GvT~H~~~~~~D~G~Ii~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~i~~l~~g~~ 262 (273)
|.- ..|.-++.-.+--..-|......+-+.|+....+... .....+...+.+..+.+|+.
T Consensus 308 G~l~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~t~~~--~~r~~~~~~~nl~~~~~G~~ 368 (386)
T PLN03139 308 GHIGGYGGDVWYPQPAPKDHPWRYMPNHAMTPHISGTTIDA--QLRYAAGVKDMLDRYFKGED 368 (386)
T ss_pred CCceEEEEcCCCCCCCCCCChhhcCCCeEEcccccccCHHH--HHHHHHHHHHHHHHHHcCCC
Confidence 863 2444555544433334555555666777654433222 22234456677777778874
No 117
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=48.45 E-value=90 Score=29.22 Aligned_cols=120 Identities=12% Similarity=0.151 Sum_probs=70.3
Q ss_pred HhHHHHHH-HHHHHhcccccccccCCCCCCceEEEEEECCc--hhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHH
Q 024063 18 EQMDEDFF-KLSKMFNAMRSVVRVPDIDPKYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRF 94 (273)
Q Consensus 18 ~~l~~~f~-~l~~~~~~~~~~~r~~~~~~~~kiav~~Sg~g--~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~ 94 (273)
-++|.+-. -|+.+. .+ + ...+++++|+|.- ..++++.... +.+=+.|+ ++.. ....++
T Consensus 98 T~~RTaA~salaa~~------l~-~---da~~l~iiGaG~QA~~~~~a~~~v~-----~i~~v~v~-~r~~---~~a~~f 158 (301)
T PRK06407 98 GQIRTGAVTAYATSI------LH-K---NVENFTIIGSGFQAETQLEGMASVY-----NPKRIRVY-SRNF---DHARAF 158 (301)
T ss_pred HHHHHHHHHHHHHHH------hh-c---CCcEEEEECCcHHHHHHHHHHHhcC-----CCCEEEEE-CCCH---HHHHHH
Confidence 56666443 556543 11 1 3489999999853 3555555431 23333445 4421 222333
Q ss_pred H----HHcCCCEEEEcCCCCchHHHHHHHhcCCCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHH
Q 024063 95 L----ERHGIPYHYLCAKENEREEELLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFL 170 (273)
Q Consensus 95 a----~~~gIp~~~~~~~~~~~~~~~~~~l~~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l 170 (273)
| ++.|+++..+++ ..+.+.++|+|+.+--.. -| ++..+.+
T Consensus 159 ~~~~~~~~~~~v~~~~~--------~~eav~~aDIV~taT~s~-~P---------------------------~~~~~~l 202 (301)
T PRK06407 159 AERFSKEFGVDIRPVDN--------AEAALRDADTITSITNSD-TP---------------------------IFNRKYL 202 (301)
T ss_pred HHHHHHhcCCcEEEeCC--------HHHHHhcCCEEEEecCCC-Cc---------------------------EecHHHc
Confidence 3 335888876542 234456899999987654 23 6766666
Q ss_pred hhcCCCeeEeecCCCCCCCCChHH
Q 024063 171 RSYGKDVINIHHGLLPSFKGGKPA 194 (273)
Q Consensus 171 ~~~~~~~iNiHpslLP~yRG~~p~ 194 (273)
+ ++--||.=+|..|.-|-..|-
T Consensus 203 ~--pg~hV~aiGs~~p~~~El~~~ 224 (301)
T PRK06407 203 G--DEYHVNLAGSNYPNRREAEHS 224 (301)
T ss_pred C--CCceEEecCCCCCCcccCCHH
Confidence 4 345788888888877776653
No 118
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=48.34 E-value=60 Score=35.97 Aligned_cols=77 Identities=13% Similarity=0.106 Sum_probs=41.9
Q ss_pred CCceEEEEEECC-chh-HHHHHHhhhcCCC---------CceEEEEeeCCCCCCCcHHHHHHHHc-CCCEEEEcCCCCch
Q 024063 45 PKYKVAVLASKQ-EHC-LVDFLYGWQEGKL---------PVEITCVISNHDRGPNSHVIRFLERH-GIPYHYLCAKENER 112 (273)
Q Consensus 45 ~~~kiav~~Sg~-g~~-l~~ll~~~~~~~l---------~~~i~~Vvs~~~~~~~~~~~~~a~~~-gIp~~~~~~~~~~~ 112 (273)
.++||+|+|+|. |.. .+.|.+. +.. +..+..+|++.+ .....++++.+ |+....++- .+
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~---~~~~~~~~~~~~~~~~lV~VaD~~---~~~a~~la~~~~~~~~v~lDv---~D 638 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASV---KTISYYGDDSEEPTDVHVIVASLY---LKDAKETVEGIENAEAVQLDV---SD 638 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhC---cCccccccccccccccEEEEECCC---HHHHHHHHHhcCCCceEEeec---CC
Confidence 468999999986 443 3333321 111 111223445542 12345566665 665555541 12
Q ss_pred HHHHHHHhcCCCEEEEEe
Q 024063 113 EEELLELVQNTDFLVLAR 130 (273)
Q Consensus 113 ~~~~~~~l~~~Dlvv~ag 130 (273)
.+++.+.++++|+|+++-
T Consensus 639 ~e~L~~~v~~~DaVIsal 656 (1042)
T PLN02819 639 SESLLKYVSQVDVVISLL 656 (1042)
T ss_pred HHHHHHhhcCCCEEEECC
Confidence 356777777889888764
No 119
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=48.29 E-value=62 Score=26.13 Aligned_cols=66 Identities=11% Similarity=0.159 Sum_probs=35.4
Q ss_pred HHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCCCEEEEEeec
Q 024063 61 VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARYM 132 (273)
Q Consensus 61 ~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~Dlvv~ag~~ 132 (273)
++++.....+.+.+.-.++......+.+....+.++++||++..... ...+ +.+.++|+||...-.
T Consensus 16 Ea~~~~~~~~~~~v~SAG~~~~~g~~~~~~a~~~l~~~Gid~~~~~~--~l~~----~~~~~~DlIv~m~~~ 81 (140)
T smart00226 16 EALFKAIVGDRVKIDSAGTGAWVGGGADPRAVEVLKEHGIALSHHAS--QLTS----SDFKNADLVLAMDHS 81 (140)
T ss_pred HHHHHHhcCCCEEEEcCcccCCCCCCCCHHHHHHHHHcCcCccceec--cCCH----HHHHhCCEEEEeCHH
Confidence 45665543332222223333223333466788999999999743211 1222 223478999987643
No 120
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=47.65 E-value=56 Score=31.74 Aligned_cols=52 Identities=13% Similarity=0.144 Sum_probs=35.2
Q ss_pred CCCCceEEEEEECCch--hHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCC
Q 024063 43 IDPKYKVAVLASKQEH--CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIP 101 (273)
Q Consensus 43 ~~~~~kiav~~Sg~g~--~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp 101 (273)
.++..|++|++.|.-. -.++|... ++-++.|+||.+.. ....+++|++||+|
T Consensus 3 ~s~~ir~Gi~g~g~ia~~f~~al~~~---p~s~~~Ivava~~s----~~~A~~fAq~~~~~ 56 (351)
T KOG2741|consen 3 DSATIRWGIVGAGRIARDFVRALHTL---PESNHQIVAVADPS----LERAKEFAQRHNIP 56 (351)
T ss_pred CCceeEEEEeehhHHHHHHHHHhccC---cccCcEEEEEeccc----HHHHHHHHHhcCCC
Confidence 3466899999977532 22333322 23369999998763 34578999999996
No 121
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=46.88 E-value=1e+02 Score=29.13 Aligned_cols=69 Identities=16% Similarity=0.299 Sum_probs=37.1
Q ss_pred EEEEC-CchhHHHHHHhhhcCCCCceEEEEeeCC-CCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCCCEEEE
Q 024063 51 VLASK-QEHCLVDFLYGWQEGKLPVEITCVISNH-DRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVL 128 (273)
Q Consensus 51 v~~Sg-~g~~l~~ll~~~~~~~l~~~i~~Vvs~~-~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~Dlvv~ 128 (273)
||.-+ +++.+..|.++.+.|+ +.+| +++.. +...+........+.|||+..+.. ..+...++++|.|++
T Consensus 124 ILT~~~S~tv~~~l~~A~~~~k-~~~V--~v~EsrP~~~G~~~a~~L~~~GI~vtlI~D------sav~~~m~~vd~Viv 194 (310)
T PRK08535 124 IMTHCNSSAALSVIKTAHEQGK-DIEV--IATETRPRNQGHITAKELAEYGIPVTLIVD------SAVRYFMKDVDKVVV 194 (310)
T ss_pred EEEeCCcHHHHHHHHHHHHCCC-eEEE--EEecCCchhhHHHHHHHHHHCCCCEEEEeh------hHHHHHHHhCCEEEE
Confidence 45544 3556666666666654 3444 33322 111122344555678999998763 234444556676654
No 122
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=46.33 E-value=12 Score=31.19 Aligned_cols=75 Identities=21% Similarity=0.306 Sum_probs=36.4
Q ss_pred eEEEEEECC-chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCE----EEEcCCCCchHHHHHHHhcC
Q 024063 48 KVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPY----HYLCAKENEREEELLELVQN 122 (273)
Q Consensus 48 kiav~~Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~----~~~~~~~~~~~~~~~~~l~~ 122 (273)
||+|+|+|+ |+.+..++.. +| ++|. +.+.++ ..+..+-+.+..+. ...+..... ..++.+.+++
T Consensus 1 KI~ViGaG~~G~AlA~~la~--~g---~~V~-l~~~~~----~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a~~~ 69 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLAD--NG---HEVT-LWGRDE----EQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEALED 69 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHH--CT---EEEE-EETSCH----HHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHHHTT
T ss_pred CEEEECcCHHHHHHHHHHHH--cC---CEEE-EEeccH----HHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHHhCc
Confidence 799999997 5666666653 23 5554 444431 22333334443222 111111000 1234556678
Q ss_pred CCEEEEEeecC
Q 024063 123 TDFLVLARYMQ 133 (273)
Q Consensus 123 ~Dlvv~ag~~~ 133 (273)
+|+++++--.+
T Consensus 70 ad~IiiavPs~ 80 (157)
T PF01210_consen 70 ADIIIIAVPSQ 80 (157)
T ss_dssp -SEEEE-S-GG
T ss_pred ccEEEecccHH
Confidence 99999875443
No 123
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=46.00 E-value=27 Score=28.12 Aligned_cols=44 Identities=16% Similarity=0.187 Sum_probs=30.6
Q ss_pred cHHHHHHHHcCCCEEEEcC-CC----C-c---------hHHHHHHHhcCCCEEEEEeec
Q 024063 89 SHVIRFLERHGIPYHYLCA-KE----N-E---------REEELLELVQNTDFLVLARYM 132 (273)
Q Consensus 89 ~~~~~~a~~~gIp~~~~~~-~~----~-~---------~~~~~~~~l~~~Dlvv~ag~~ 132 (273)
..+.++|++.|+|+..... +. + . ..+...+.++++|++++.|..
T Consensus 29 ~~l~~lae~~~~Pv~~t~~~kg~i~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~iG~~ 87 (137)
T PF00205_consen 29 EELRELAEKLGIPVATTPMGKGVIPEDHPLFLGYLGLFGSPAANEALEQADLVLAIGTR 87 (137)
T ss_dssp HHHHHHHHHHTSEEEEEGGGTTSSTTTSTTEEEESCGGSCHHHHHHHHHSSEEEEESSS
T ss_pred HHHHHHHHHHCCCEEecCccccccCCCCchhcccCCccCCHHHHHHhcCCCEEEEECCC
Confidence 4578899999999977652 21 0 0 134566677799999999954
No 124
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=45.81 E-value=1.4e+02 Score=28.46 Aligned_cols=65 Identities=14% Similarity=0.299 Sum_probs=37.1
Q ss_pred CchhHHHHHHh-hhcCCCCceEEEEeeCC-CCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCCCEEEEE
Q 024063 56 QEHCLVDFLYG-WQEGKLPVEITCVISNH-DRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLA 129 (273)
Q Consensus 56 ~g~~l~~ll~~-~~~~~l~~~i~~Vvs~~-~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~Dlvv~a 129 (273)
..+.+.+++.. ...| .++..+|+.. ++....-..+..+++|||+..+.+ .++-..+.++|.|++-
T Consensus 128 ~S~~v~~~l~~A~~~~---k~~~V~VtESRP~~eG~~~ak~L~~~gI~~~~I~D------sa~~~~~~~vd~VivG 194 (301)
T COG1184 128 FSKTVLEVLKTAADRG---KRFKVIVTESRPRGEGRIMAKELRQSGIPVTVIVD------SAVGAFMSRVDKVLVG 194 (301)
T ss_pred CcHHHHHHHHHhhhcC---CceEEEEEcCCCcchHHHHHHHHHHcCCceEEEec------hHHHHHHHhCCEEEEC
Confidence 34445555544 3333 2355566643 333344456667889999998763 2444455578887643
No 125
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=45.12 E-value=52 Score=31.62 Aligned_cols=55 Identities=22% Similarity=0.204 Sum_probs=34.7
Q ss_pred ceEEEEEECCc-h-hHHHHHHhhhcCCCCceEEEEeeCC-CC----C-----C---CcHHHHHHHHcCCCEEEEc
Q 024063 47 YKVAVLASKQE-H-CLVDFLYGWQEGKLPVEITCVISNH-DR----G-----P---NSHVIRFLERHGIPYHYLC 106 (273)
Q Consensus 47 ~kiav~~Sg~g-~-~l~~ll~~~~~~~l~~~i~~Vvs~~-~~----~-----~---~~~~~~~a~~~gIp~~~~~ 106 (273)
+||+|..||+- | .+..++.. .| .++.+|..+. +. . . ...+.++|+..|||++.++
T Consensus 1 ~kVlValSGGvDSsv~a~lL~~--~G---~~V~~v~~~~~~~~~~~~~~~c~~~~~~~~a~~va~~lgIp~~vid 70 (352)
T TIGR00420 1 KKVIVGLSGGVDSSVSAYLLKQ--QG---YEVVGVFMKNWEEDDKNDGHGCTSAEDLRDAQAICEKLGIPLEKVN 70 (352)
T ss_pred CeEEEEEeCCHHHHHHHHHHHH--cC---CeEEEEEEEcccccccccccCcCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 48999999874 3 33334432 23 5888887631 10 0 0 1235788999999999876
No 126
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=44.68 E-value=77 Score=27.47 Aligned_cols=70 Identities=14% Similarity=0.135 Sum_probs=39.3
Q ss_pred HHHHHHhhhcCCCCceEEEEeeCCCC----CCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhc-C-----CCEEEEE
Q 024063 60 LVDFLYGWQEGKLPVEITCVISNHDR----GPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ-N-----TDFLVLA 129 (273)
Q Consensus 60 l~~ll~~~~~~~l~~~i~~Vvs~~~~----~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~-~-----~Dlvv~a 129 (273)
+.+.++.+++-. ..+=++||||... +....+..+++..|||+.....+.-..-+++.+.+. + ++=+++.
T Consensus 64 ~~~~~~~l~~~~-~~~~v~IvSNsaGs~~d~~~~~a~~~~~~lgIpvl~h~~kKP~~~~~i~~~~~~~~~~~~p~eiavI 142 (168)
T PF09419_consen 64 YAEWLNELKKQF-GKDRVLIVSNSAGSSDDPDGERAEALEKALGIPVLRHRAKKPGCFREILKYFKCQKVVTSPSEIAVI 142 (168)
T ss_pred HHHHHHHHHHHC-CCCeEEEEECCCCcccCccHHHHHHHHHhhCCcEEEeCCCCCccHHHHHHHHhhccCCCCchhEEEE
Confidence 444455554321 2223578999731 113447778899999987665332222346666664 2 5556666
Q ss_pred e
Q 024063 130 R 130 (273)
Q Consensus 130 g 130 (273)
|
T Consensus 143 G 143 (168)
T PF09419_consen 143 G 143 (168)
T ss_pred c
Confidence 6
No 127
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=44.67 E-value=45 Score=33.04 Aligned_cols=77 Identities=17% Similarity=0.257 Sum_probs=45.7
Q ss_pred eEEEEeeCCCCCC-C-------cHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhc--CCCEEEEEeecCCcchhhHhhhh
Q 024063 75 EITCVISNHDRGP-N-------SHVIRFLERHGIPYHYLCAKENEREEELLELVQ--NTDFLVLARYMQPVPLQKEAYLG 144 (273)
Q Consensus 75 ~i~~Vvs~~~~~~-~-------~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~--~~Dlvv~ag~~~~~p~~~~~~~~ 144 (273)
.++.||-|+.++- + -.+++.|+++||++.. +|++..+- +.-++=++.|.-++|+
T Consensus 200 T~AivviNP~NPcGnVys~~HL~kiae~A~klgi~vIa---------DEVY~~~vfg~~pfvpmg~fssiVPV------- 263 (447)
T KOG0259|consen 200 TVAIVVINPNNPCGNVYSEDHLKKIAETAKKLGIMVIA---------DEVYGHTVFGDKPFVPMGKFSSIVPV------- 263 (447)
T ss_pred eeEEEEeCCCCCCcccccHHHHHHHHHHHHHhCCeEEe---------hhhcceeecCCCCccchhhccccCce-------
Confidence 4555666665442 1 2378889999999973 24554432 3344545555555552
Q ss_pred hhhhhhhcccCcc-cccccccCChhHHhhcCCCeeEeec
Q 024063 145 YKLLESLSSKGSL-TSYFNMILSGKFLRSYGKDVINIHH 182 (273)
Q Consensus 145 ~~~~~~~~~~~~~-~~y~~~il~~~~l~~~~~~~iNiHp 182 (273)
.++ ++..++++| -|+.|.|-+|-
T Consensus 264 ----------itlggisKrW~VP-----GWRlGWi~~hD 287 (447)
T KOG0259|consen 264 ----------ITLGGISKRWIVP-----GWRLGWIALHD 287 (447)
T ss_pred ----------EeecccccccccC-----CceeeeEEEec
Confidence 122 266677776 47778888885
No 128
>COG4693 PchG Oxidoreductase (NAD-binding), involved in siderophore biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=44.32 E-value=41 Score=32.14 Aligned_cols=53 Identities=19% Similarity=0.292 Sum_probs=34.8
Q ss_pred CCCceEEEEEECCchh-HHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEE
Q 024063 44 DPKYKVAVLASKQEHC-LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYL 105 (273)
Q Consensus 44 ~~~~kiav~~Sg~g~~-l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~ 105 (273)
+| +||.|+|+.-|.- |.++..+ -...+..++...-.+ .-.++|+++|||.+.-
T Consensus 3 ~p-ksVvV~GtrFGq~Ylaaf~~~----~~~~eLaGiLaqGSe----RSRaLAh~~GVply~~ 56 (361)
T COG4693 3 DP-KSVVVCGTRFGQFYLAAFAAA----PPRFELAGILAQGSE----RSRALAHRLGVPLYCE 56 (361)
T ss_pred CC-ceEEEecchHHHHHHHHhccC----CCCceeehhhhcccH----HHHHHHHHhCCccccC
Confidence 34 4999999987753 3333332 224778888765422 2378899999998753
No 129
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=44.03 E-value=90 Score=25.88 Aligned_cols=79 Identities=11% Similarity=0.130 Sum_probs=42.6
Q ss_pred ceEEEEEECCc--hhH-HHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCC
Q 024063 47 YKVAVLASKQE--HCL-VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 123 (273)
Q Consensus 47 ~kiav~~Sg~g--~~l-~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~ 123 (273)
+||.|+.+|+. |.+ ++++..... .+.+.-.++......+.+....+.++++||++.....+ ...++ .+.++
T Consensus 3 ~~ILfVC~gN~cRSpmAEa~~~~~~~-~~~v~SaG~~~~~g~~~~~~a~~~l~~~Gid~~~h~s~-~lt~~----~~~~~ 76 (144)
T PRK11391 3 NSILVVCTGNICRSPIGERLLRKRLP-GVKVKSAGVHGLVKHPADATAADVAANHGVSLEGHAGR-KLTAE----MARNY 76 (144)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhcC-CeEEEcccccCCCCCCCCHHHHHHHHHcCCCcCCCccC-cCCHH----HHhhC
Confidence 57888777763 444 556654322 22233333332222234566889999999997421111 11111 23478
Q ss_pred CEEEEEee
Q 024063 124 DFLVLARY 131 (273)
Q Consensus 124 Dlvv~ag~ 131 (273)
|+|+...-
T Consensus 77 DlIl~M~~ 84 (144)
T PRK11391 77 DLILAMES 84 (144)
T ss_pred CEEEECCH
Confidence 99997753
No 130
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=43.96 E-value=68 Score=27.78 Aligned_cols=52 Identities=12% Similarity=0.105 Sum_probs=32.3
Q ss_pred CceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCCCEEEEEee
Q 024063 73 PVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARY 131 (273)
Q Consensus 73 ~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~Dlvv~ag~ 131 (273)
.++|.+++-+. +.......+..|+-+...+ . .+.+.+.+.++++|.|+++.-
T Consensus 22 ~~~V~~l~R~~----~~~~~~~l~~~g~~vv~~d--~-~~~~~l~~al~g~d~v~~~~~ 73 (233)
T PF05368_consen 22 GFSVRALVRDP----SSDRAQQLQALGAEVVEAD--Y-DDPESLVAALKGVDAVFSVTP 73 (233)
T ss_dssp TGCEEEEESSS----HHHHHHHHHHTTTEEEES---T-T-HHHHHHHHTTCSEEEEESS
T ss_pred CCCcEEEEecc----chhhhhhhhcccceEeecc--c-CCHHHHHHHHcCCceEEeecC
Confidence 37777655433 2334455667888666433 1 245678888889999987765
No 131
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=43.93 E-value=1.9e+02 Score=24.10 Aligned_cols=39 Identities=21% Similarity=0.219 Sum_probs=21.7
Q ss_pred CcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCCCEEEEEe
Q 024063 88 NSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLAR 130 (273)
Q Consensus 88 ~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~Dlvv~ag 130 (273)
..++..+..+.|.-+..+..+. .++.+.++++|+++++-
T Consensus 41 G~pla~lL~~~gatV~~~~~~t----~~l~~~v~~ADIVvsAt 79 (140)
T cd05212 41 GAPLQCLLQRDGATVYSCDWKT----IQLQSKVHDADVVVVGS 79 (140)
T ss_pred HHHHHHHHHHCCCEEEEeCCCC----cCHHHHHhhCCEEEEec
Confidence 3455555566666666554221 12344556788877664
No 132
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=43.82 E-value=84 Score=28.59 Aligned_cols=53 Identities=15% Similarity=0.184 Sum_probs=31.4
Q ss_pred ceEEEEEECCchhHH---HHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEc
Q 024063 47 YKVAVLASKQEHCLV---DFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 106 (273)
Q Consensus 47 ~kiav~~Sg~g~~l~---~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~ 106 (273)
|||.|.+.|.+..+. .|.+.+... .+++..+ |.+.. ....+.++.|++++.++
T Consensus 1 ~~i~~~~g~~~g~~~~~~~La~~L~~~--g~eV~vv-~~~~~----~~~~~~~~~g~~~~~i~ 56 (348)
T TIGR01133 1 KKVVLAAGGTGGHIFPALAVAEELIKR--GVEVLWL-GTKRG----LEKRLVPKAGIEFYFIP 56 (348)
T ss_pred CeEEEEeCccHHHHhHHHHHHHHHHhC--CCEEEEE-eCCCc----chhcccccCCCceEEEe
Confidence 478888877665553 466665542 3787654 54321 11233455799998776
No 133
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=42.96 E-value=39 Score=25.84 Aligned_cols=58 Identities=12% Similarity=0.114 Sum_probs=31.9
Q ss_pred EEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHh
Q 024063 52 LASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELV 120 (273)
Q Consensus 52 ~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l 120 (273)
+++|....+.+ +++|+ +..+.+-++-+...-..+..+|+.++||+.+..+ .+||=..+
T Consensus 9 lv~G~~~vlka----Ik~gk--akLViiA~Da~~~~~k~i~~~c~~~~Vpv~~~~t-----~~eLG~A~ 66 (82)
T PRK13601 9 RVVGAKQTLKA----ITNCN--VLQVYIAKDAEEHVTKKIKELCEEKSIKIVYIDT-----MKELGVMC 66 (82)
T ss_pred EEEchHHHHHH----HHcCC--eeEEEEeCCCCHHHHHHHHHHHHhCCCCEEEeCC-----HHHHHHHH
Confidence 45555555544 44453 4444333333211125578899999999976542 24555555
No 134
>KOG1466 consensus Translation initiation factor 2B, alpha subunit (eIF-2Balpha/GCN3) [Translation, ribosomal structure and biogenesis]
Probab=42.61 E-value=2.7e+02 Score=26.43 Aligned_cols=64 Identities=16% Similarity=0.259 Sum_probs=39.0
Q ss_pred hhHHHHHHhhhcCCCCceEEEEeeC-CCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCCCEEEEEe
Q 024063 58 HCLVDFLYGWQEGKLPVEITCVISN-HDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLAR 130 (273)
Q Consensus 58 ~~l~~ll~~~~~~~l~~~i~~Vvs~-~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~Dlvv~ag 130 (273)
..++.|+.+.+++. ..-+.+|. +++.++.-+.+-.++.|||+..+=+ ..+-..++++|+|++-.
T Consensus 142 vVl~~L~~Aa~~~~---~F~V~vTEsrPd~sG~lm~~~L~~~~IPvtlvlD------SaVgyvMe~vD~VlVGA 206 (313)
T KOG1466|consen 142 VVLEVLLTAAQNKK---RFRVYVTESRPDGSGKLMAKELKKLGIPVTLVLD------SAVGYVMERVDLVLVGA 206 (313)
T ss_pred HHHHHHHHHHhcCc---eEEEEEecCCCCCchhHHHHHHHhcCCCeEEEeh------hhHHHHHhhccEEEEcc
Confidence 36777888877653 33345553 2333345566667889999976532 23445556889886543
No 135
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=42.29 E-value=2.7e+02 Score=25.38 Aligned_cols=67 Identities=16% Similarity=0.278 Sum_probs=36.1
Q ss_pred HHhcCCCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhc--CCCeeEeecCCCCCC
Q 024063 118 ELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSY--GKDVINIHHGLLPSF 188 (273)
Q Consensus 118 ~~l~~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~--~~~~iNiHpslLP~y 188 (273)
+.++++|+|+.+-.... . -+...+. ++-+...++..+++--|.+.+.++.+.. +.+++++|+-- |.+
T Consensus 80 ~a~~~aDlVieavpe~~-~-~k~~~~~-~l~~~~~~~~ii~sntSt~~~~~~~~~~~~~~r~vg~Hf~~-p~~ 148 (287)
T PRK08293 80 EAVKDADLVIEAVPEDP-E-IKGDFYE-ELAKVAPEKTIFATNSSTLLPSQFAEATGRPEKFLALHFAN-EIW 148 (287)
T ss_pred HHhcCCCEEEEeccCCH-H-HHHHHHH-HHHhhCCCCCEEEECcccCCHHHHHhhcCCcccEEEEcCCC-CCC
Confidence 44568999998864320 0 0111111 2223345666665555555555555543 44689999854 444
No 136
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=41.77 E-value=40 Score=26.42 Aligned_cols=58 Identities=17% Similarity=0.181 Sum_probs=32.0
Q ss_pred EEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCC--CcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhc
Q 024063 52 LASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGP--NSHVIRFLERHGIPYHYLCAKENEREEELLELVQ 121 (273)
Q Consensus 52 ~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~--~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~ 121 (273)
+.+|...++.+ +++|+ +.. ||-..|-+. ...+..+|++++||++.+.. +.+|+-..+-
T Consensus 17 l~~G~~~v~ka----i~~gk--akl--ViiA~D~~~~~~~~i~~~c~~~~Ip~~~~~~----tk~eLG~a~G 76 (99)
T PRK01018 17 VILGSKRTIKA----IKLGK--AKL--VIVASNCPKDIKEDIEYYAKLSGIPVYEYEG----SSVELGTLCG 76 (99)
T ss_pred EEEcHHHHHHH----HHcCC--ceE--EEEeCCCCHHHHHHHHHHHHHcCCCEEEECC----CHHHHHHHhC
Confidence 55554444444 44453 444 333333222 25588999999999876631 1245666653
No 137
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=41.35 E-value=2.2e+02 Score=26.37 Aligned_cols=66 Identities=14% Similarity=0.136 Sum_probs=34.1
Q ss_pred CceEEEEEECC-chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCCC
Q 024063 46 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 124 (273)
Q Consensus 46 ~~kiav~~Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~D 124 (273)
..|++|+|.|. |..+...+.+. | ++|. +.++.. . -.+.+.+.|..... -+++.+.+.++|
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~--G---~~V~--v~~R~~---~-~~~~~~~~g~~~~~--------~~~l~~~l~~aD 211 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSAL--G---ARVF--VGARSS---A-DLARITEMGLIPFP--------LNKLEEKVAEID 211 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHC--C---CEEE--EEeCCH---H-HHHHHHHCCCeeec--------HHHHHHHhccCC
Confidence 47899999875 33333333321 2 4543 444421 1 13334455543221 124555667899
Q ss_pred EEEEEe
Q 024063 125 FLVLAR 130 (273)
Q Consensus 125 lvv~ag 130 (273)
+|+.+-
T Consensus 212 iVint~ 217 (287)
T TIGR02853 212 IVINTI 217 (287)
T ss_pred EEEECC
Confidence 999753
No 138
>PRK13243 glyoxylate reductase; Reviewed
Probab=41.27 E-value=3.2e+02 Score=25.89 Aligned_cols=160 Identities=17% Similarity=0.210 Sum_probs=88.3
Q ss_pred CceEEEEEECC-chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCCC
Q 024063 46 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 124 (273)
Q Consensus 46 ~~kiav~~Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~D 124 (273)
.++|+|+|.|. |..+...+.++ ..+|. +.++... . ..+...|..+ . ++.++++++|
T Consensus 150 gktvgIiG~G~IG~~vA~~l~~~-----G~~V~--~~d~~~~---~--~~~~~~~~~~---~--------~l~ell~~aD 206 (333)
T PRK13243 150 GKTIGIIGFGRIGQAVARRAKGF-----GMRIL--YYSRTRK---P--EAEKELGAEY---R--------PLEELLRESD 206 (333)
T ss_pred CCEEEEECcCHHHHHHHHHHHHC-----CCEEE--EECCCCC---h--hhHHHcCCEe---c--------CHHHHHhhCC
Confidence 47999999987 66666555543 35553 3344211 1 1234455421 1 2445566899
Q ss_pred EEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCCCCCCCCC----hHHHHHHHh
Q 024063 125 FLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG----KPAKQAFDA 200 (273)
Q Consensus 125 lvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~----~p~~~ai~~ 200 (273)
+|+++- |+.+ .-+.++..+.++..+.+.+=+--| ||. ..+..|+.+
T Consensus 207 iV~l~l-----P~t~--------------------~T~~~i~~~~~~~mk~ga~lIN~a-----Rg~~vd~~aL~~aL~~ 256 (333)
T PRK13243 207 FVSLHV-----PLTK--------------------ETYHMINEERLKLMKPTAILVNTA-----RGKVVDTKALVKALKE 256 (333)
T ss_pred EEEEeC-----CCCh--------------------HHhhccCHHHHhcCCCCeEEEECc-----CchhcCHHHHHHHHHc
Confidence 999874 2211 122378888888887663333222 663 467777888
Q ss_pred CCCEeEEEEEEecCc-cCCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 024063 201 GVKLIGATSHFVTEE-LDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELR 261 (273)
Q Consensus 201 G~~~~GvT~H~~~~~-~D~G~Ii~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~i~~l~~g~ 261 (273)
|. ..|+-+=..+.+ ...-+......+-+.|+....+... .....+.+.+.+..+.+|+
T Consensus 257 g~-i~gAaLDV~~~EP~~~~pL~~~~nvilTPHia~~t~e~--~~~~~~~~~~ni~~~~~g~ 315 (333)
T PRK13243 257 GW-IAGAGLDVFEEEPYYNEELFSLKNVVLAPHIGSATFEA--REGMAELVAENLIAFKRGE 315 (333)
T ss_pred CC-eEEEEeccCCCCCCCCchhhcCCCEEECCcCCcCHHHH--HHHHHHHHHHHHHHHHcCC
Confidence 85 455544443333 2233565556677777765433322 2222345566667777776
No 139
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=41.03 E-value=1.9e+02 Score=27.19 Aligned_cols=69 Identities=19% Similarity=0.328 Sum_probs=36.8
Q ss_pred EEEECC-chhHHHHHHhhhcCCCCceEEEEeeC-CCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCCCEEEE
Q 024063 51 VLASKQ-EHCLVDFLYGWQEGKLPVEITCVISN-HDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVL 128 (273)
Q Consensus 51 v~~Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~-~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~Dlvv~ 128 (273)
||.-+. ++.+..|..+.+.|+ +.+|. ++. ++...+........+.|||+..++. ..+...++++|.|++
T Consensus 119 ILT~~~S~tv~~~l~~a~~~~~-~f~V~--v~EsrP~~~G~~~a~~L~~~gI~vtlI~D------sa~~~~m~~vd~Viv 189 (301)
T TIGR00511 119 VMTHCNSEAALSVIKTAFEQGK-DIEVI--ATETRPRKQGHITAKELRDYGIPVTLIVD------SAVRYFMKEVDHVVV 189 (301)
T ss_pred EEEECCcHHHHHHHHHHHHcCC-cEEEE--EecCCCcchHHHHHHHHHHCCCCEEEEeh------hHHHHHHHhCCEEEE
Confidence 455443 455555666665554 34543 332 2221223345555678999998763 234444556777764
No 140
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=40.94 E-value=1.3e+02 Score=28.04 Aligned_cols=68 Identities=22% Similarity=0.311 Sum_probs=39.4
Q ss_pred CceEEEEEECCchhHHHHHHhhhc-CCCC-ceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCC
Q 024063 46 KYKVAVLASKQEHCLVDFLYGWQE-GKLP-VEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 123 (273)
Q Consensus 46 ~~kiav~~Sg~g~~l~~ll~~~~~-~~l~-~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~ 123 (273)
++||+|+|.|+ =-++++..+.. |.++ .+| ++|++. +.....++.++|+.+ ..+ ..+...++
T Consensus 1 ~~~IgfIG~G~--Mg~Ai~~gl~~~g~~~~~~I--~v~~~~---~e~~~~l~~~~g~~~--~~~--------~~~~~~~a 63 (266)
T COG0345 1 MMKIGFIGAGN--MGEAILSGLLKSGALPPEEI--IVTNRS---EEKRAALAAEYGVVT--TTD--------NQEAVEEA 63 (266)
T ss_pred CceEEEEccCH--HHHHHHHHHHhcCCCCcceE--EEeCCC---HHHHHHHHHHcCCcc--cCc--------HHHHHhhC
Confidence 47899999775 22344544332 4344 343 567763 233446889999884 221 11233478
Q ss_pred CEEEEEe
Q 024063 124 DFLVLAR 130 (273)
Q Consensus 124 Dlvv~ag 130 (273)
|+|+++=
T Consensus 64 dvv~Lav 70 (266)
T COG0345 64 DVVFLAV 70 (266)
T ss_pred CEEEEEe
Confidence 9998875
No 141
>PRK10206 putative oxidoreductase; Provisional
Probab=40.75 E-value=65 Score=30.46 Aligned_cols=66 Identities=14% Similarity=0.152 Sum_probs=36.6
Q ss_pred CceEEEEEECCch---hHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcC-CCEEEEcCCCCchHHHHHHHhc
Q 024063 46 KYKVAVLASKQEH---CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHG-IPYHYLCAKENEREEELLELVQ 121 (273)
Q Consensus 46 ~~kiav~~Sg~g~---~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~g-Ip~~~~~~~~~~~~~~~~~~l~ 121 (273)
+.|++|+|.|... .+..+... .-..++++|+.... ...+++++++ ++++ . .+.++|+
T Consensus 1 ~irvgiiG~G~~~~~~h~~~~~~~----~~~~~l~av~d~~~-----~~~~~~~~~~~~~~~--~--------~~~ell~ 61 (344)
T PRK10206 1 VINCAFIGFGKSTTRYHLPYVLNR----KDSWHVAHIFRRHA-----KPEEQAPIYSHIHFT--S--------DLDEVLN 61 (344)
T ss_pred CeEEEEECCCHHHhheehhhHhcC----CCCEEEEEEEcCCh-----hHHHHHHhcCCCccc--C--------CHHHHhc
Confidence 4699999998632 13323221 11478888876432 1236677776 3332 1 1233443
Q ss_pred --CCCEEEEEe
Q 024063 122 --NTDFLVLAR 130 (273)
Q Consensus 122 --~~Dlvv~ag 130 (273)
++|+|+++.
T Consensus 62 ~~~iD~V~I~t 72 (344)
T PRK10206 62 DPDVKLVVVCT 72 (344)
T ss_pred CCCCCEEEEeC
Confidence 678888876
No 142
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=40.66 E-value=36 Score=25.69 Aligned_cols=29 Identities=21% Similarity=0.359 Sum_probs=24.9
Q ss_pred eEEEEEEcCCCCCChHhHHHHHHHHHHHh
Q 024063 3 KMCIEFIFDPIKWPREQMDEDFFKLSKMF 31 (273)
Q Consensus 3 ~~~~~~~~~~~~~~~~~l~~~f~~l~~~~ 31 (273)
.|+++|++.+-.-..++|+++|.+++++.
T Consensus 48 ~~~~e~~v~~~~~~~~~lr~~L~~la~el 76 (84)
T cd04871 48 KACVEFSVRGQPADLEALRAALLELASEL 76 (84)
T ss_pred cEEEEEEEeCCCCCHHHHHHHHHHHhccc
Confidence 57899998876677899999999999876
No 143
>PRK07027 cobalamin biosynthesis protein CbiG; Provisional
Probab=40.56 E-value=86 Score=25.60 Aligned_cols=42 Identities=14% Similarity=0.290 Sum_probs=29.1
Q ss_pred HhhhcCCC-CceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEc
Q 024063 65 YGWQEGKL-PVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 106 (273)
Q Consensus 65 ~~~~~~~l-~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~ 106 (273)
+.++...+ +..|.++-|-..+..+..+.+.|+++|+|+..++
T Consensus 25 ~~L~~~~l~~~si~~lasi~~K~~E~~L~~~A~~lg~pl~~~~ 67 (126)
T PRK07027 25 AALAQRPLASADVRVVATLDLKADEAGLLALCARHGWPLRAFS 67 (126)
T ss_pred HHHHHcCCCHHHhheeEehhhhcCCHHHHHHHHHhCCCeEEeC
Confidence 33444433 3566677765544456778999999999999885
No 144
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=40.49 E-value=52 Score=30.90 Aligned_cols=123 Identities=15% Similarity=0.178 Sum_probs=58.6
Q ss_pred HhHHHHHH-HHHHHhcccccccccCCCCCCceEEEEEECCc--hhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHH
Q 024063 18 EQMDEDFF-KLSKMFNAMRSVVRVPDIDPKYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRF 94 (273)
Q Consensus 18 ~~l~~~f~-~l~~~~~~~~~~~r~~~~~~~~kiav~~Sg~g--~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~ 94 (273)
-++|.+-. -|+.+. . ......+++|||+|.- ..++++.... +.+-+.|++.+. .....+.+.
T Consensus 108 T~~RTaA~sala~~~--------L-a~~~~~~l~viGaG~QA~~~~~a~~~~~-----~i~~v~v~~r~~-~~~~~~~~~ 172 (313)
T PF02423_consen 108 TALRTAAVSALAARY--------L-ARPDARTLGVIGAGVQARWHLRALAAVR-----PIKEVRVYSRSP-ERAEAFAAR 172 (313)
T ss_dssp HHHHHHHHHHHHHHH--------H-S-TT--EEEEE--SHHHHHHHHHHHHHS-------SEEEEE-SSH-HHHHHHHHH
T ss_pred hhhHHHHHHHHHHHH--------h-CcCCCceEEEECCCHHHHHHHHHHHHhC-----CceEEEEEccCh-hHHHHHHHh
Confidence 56676544 455443 1 1123468999999853 4566665542 233344554331 111223344
Q ss_pred HHHcCCCEEEEcCCCCchHHHHHHHhcCCCEEEEEeecCCc-chhhHhhhhhhhhhhhcccCcccccccccCChhHHhhc
Q 024063 95 LERHGIPYHYLCAKENEREEELLELVQNTDFLVLARYMQPV-PLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSY 173 (273)
Q Consensus 95 a~~~gIp~~~~~~~~~~~~~~~~~~l~~~Dlvv~ag~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~ 173 (273)
++++|+++..+++ ..+.++++|+|+.+.-..-- | ++..+.++
T Consensus 173 ~~~~~~~v~~~~~--------~~~av~~aDii~taT~s~~~~P---------------------------~~~~~~l~-- 215 (313)
T PF02423_consen 173 LRDLGVPVVAVDS--------AEEAVRGADIIVTATPSTTPAP---------------------------VFDAEWLK-- 215 (313)
T ss_dssp HHCCCTCEEEESS--------HHHHHTTSSEEEE----SSEEE---------------------------SB-GGGS---
T ss_pred hccccccceeccc--------hhhhcccCCEEEEccCCCCCCc---------------------------cccHHHcC--
Confidence 4447888887642 33456799999998765511 3 56655553
Q ss_pred CCCeeEeecCCCCCCCCCh
Q 024063 174 GKDVINIHHGLLPSFKGGK 192 (273)
Q Consensus 174 ~~~~iNiHpslLP~yRG~~ 192 (273)
++-.||.-.+.-|..|-..
T Consensus 216 ~g~hi~~iGs~~~~~~El~ 234 (313)
T PF02423_consen 216 PGTHINAIGSYTPGMRELD 234 (313)
T ss_dssp TT-EEEE-S-SSTTBESB-
T ss_pred CCcEEEEecCCCCchhhcC
Confidence 3456777777777666544
No 145
>PRK06823 ornithine cyclodeaminase; Validated
Probab=40.47 E-value=1.3e+02 Score=28.45 Aligned_cols=106 Identities=8% Similarity=0.040 Sum_probs=63.7
Q ss_pred CCceEEEEEECCc--hhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcC
Q 024063 45 PKYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQN 122 (273)
Q Consensus 45 ~~~kiav~~Sg~g--~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~ 122 (273)
...+++++|+|.- +.+++++... +.+=+.|+ ++.........+.+++.|+++..++. ..+.+++
T Consensus 127 d~~~l~iiG~G~qA~~~~~a~~~v~-----~i~~v~v~-~r~~~~a~~~~~~~~~~~~~v~~~~~--------~~~av~~ 192 (315)
T PRK06823 127 HVSAIGIVGTGIQARMQLMYLKNVT-----DCRQLWVW-GRSETALEEYRQYAQALGFAVNTTLD--------AAEVAHA 192 (315)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhcC-----CCCEEEEE-CCCHHHHHHHHHHHHhcCCcEEEECC--------HHHHhcC
Confidence 4579999999863 4566655431 23333344 44211112233444555888775431 2344568
Q ss_pred CCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCCCCCCCCChHH
Q 024063 123 TDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPA 194 (273)
Q Consensus 123 ~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~p~ 194 (273)
+|+|+.+--.. -| ++..+.++ ++-.||.=+|..|..|-..|-
T Consensus 193 ADIV~taT~s~-~P---------------------------~~~~~~l~--~G~hi~~iGs~~p~~~Eld~~ 234 (315)
T PRK06823 193 ANLIVTTTPSR-EP---------------------------LLQAEDIQ--PGTHITAVGADSPGKQELDAE 234 (315)
T ss_pred CCEEEEecCCC-Cc---------------------------eeCHHHcC--CCcEEEecCCCCcccccCCHH
Confidence 99999987554 23 67666664 455788888888888876653
No 146
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=40.42 E-value=2e+02 Score=26.48 Aligned_cols=153 Identities=15% Similarity=0.177 Sum_probs=87.4
Q ss_pred EEEEECCchhH-HHHHHhhh-cCCCCceEEEEeeCCCCCCCcHHHHHHH--HcCCCEEEEcCCCCchHHHHHHHhc----
Q 024063 50 AVLASKQEHCL-VDFLYGWQ-EGKLPVEITCVISNHDRGPNSHVIRFLE--RHGIPYHYLCAKENEREEELLELVQ---- 121 (273)
Q Consensus 50 av~~Sg~g~~l-~~ll~~~~-~~~l~~~i~~Vvs~~~~~~~~~~~~~a~--~~gIp~~~~~~~~~~~~~~~~~~l~---- 121 (273)
.|+++|+++.. .+|.+++. .| .+ .+||.+. ...++-++ .-+|-..+++-.+...-+++++++.
T Consensus 7 TiLITGG~sGIGl~lak~f~elg---N~--VIi~gR~----e~~L~e~~~~~p~~~t~v~Dv~d~~~~~~lvewLkk~~P 77 (245)
T COG3967 7 TILITGGASGIGLALAKRFLELG---NT--VIICGRN----EERLAEAKAENPEIHTEVCDVADRDSRRELVEWLKKEYP 77 (245)
T ss_pred EEEEeCCcchhhHHHHHHHHHhC---CE--EEEecCc----HHHHHHHHhcCcchheeeecccchhhHHHHHHHHHhhCC
Confidence 36777765532 23333322 13 23 3688773 12222222 2234455555222222357888885
Q ss_pred CCCEEE-EEeecCCcchhhHhhhhh----hhhhhh----cccCcccccccccCChhHHhhcCCCeeEeecCC-------C
Q 024063 122 NTDFLV-LARYMQPVPLQKEAYLGY----KLLESL----SSKGSLTSYFNMILSGKFLRSYGKDVINIHHGL-------L 185 (273)
Q Consensus 122 ~~Dlvv-~ag~~~~~p~~~~~~~~~----~~~~~~----~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpsl-------L 185 (273)
+.++++ .||-|+ ..|. .+++++ .-+...-+|....+=+.+++.+..-+||.-.|| -
T Consensus 78 ~lNvliNNAGIqr--------~~dlt~~e~~~~~~~~eI~~Nl~API~Lt~~~lphl~~q~~a~IInVSSGLafvPm~~~ 149 (245)
T COG3967 78 NLNVLINNAGIQR--------NEDLTGAEDLLDDAEQEIATNLLAPIRLTALLLPHLLRQPEATIINVSSGLAFVPMAST 149 (245)
T ss_pred chheeeecccccc--------hhhccCCcchhhHHHHHHHHhhhhHHHHHHHHHHHHHhCCCceEEEeccccccCccccc
Confidence 345444 466665 1122 122221 224555678887778888888887899998875 2
Q ss_pred CCCCC----ChHHHHHHHhCCCEeEEEEEEecC-ccCCC
Q 024063 186 PSFKG----GKPAKQAFDAGVKLIGATSHFVTE-ELDAG 219 (273)
Q Consensus 186 P~yRG----~~p~~~ai~~G~~~~GvT~H~~~~-~~D~G 219 (273)
|-|-+ .+.+--|+....+.+++-+..+-+ -+|++
T Consensus 150 PvYcaTKAaiHsyt~aLR~Qlk~t~veVIE~~PP~V~t~ 188 (245)
T COG3967 150 PVYCATKAAIHSYTLALREQLKDTSVEVIELAPPLVDTT 188 (245)
T ss_pred ccchhhHHHHHHHHHHHHHHhhhcceEEEEecCCceecC
Confidence 44443 344555778888999999999874 78887
No 147
>PRK13530 arsenate reductase; Provisional
Probab=40.35 E-value=48 Score=27.12 Aligned_cols=77 Identities=16% Similarity=0.204 Sum_probs=40.6
Q ss_pred CceEEEEEECCc--hhH-HHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcC
Q 024063 46 KYKVAVLASKQE--HCL-VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQN 122 (273)
Q Consensus 46 ~~kiav~~Sg~g--~~l-~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~ 122 (273)
++||.|+.+|+. |.+ ++++.....+.+.+.-.++ . ..+.+..+.+.++++||++.....+ ...++ .+.+
T Consensus 3 ~~~vLFvC~~N~cRS~mAEal~~~~~~~~~~v~SAG~--~-~~~~~~~a~~~l~e~Gi~~~~~~s~-~l~~~----~~~~ 74 (133)
T PRK13530 3 KKTIYFLCTGNSCRSQMAEGWGKQYLGDKWNVYSAGI--E-AHGVNPNAIKAMKEVGIDISNQTSD-IIDND----ILNN 74 (133)
T ss_pred CCEEEEEcCCchhHHHHHHHHHHHhcCCCEEEECCCC--C-CCCCCHHHHHHHHHcCCCcCCCccc-cCChh----Hhcc
Confidence 578888887764 334 4566543322211111111 1 1234566888999999997421111 11111 2347
Q ss_pred CCEEEEEe
Q 024063 123 TDFLVLAR 130 (273)
Q Consensus 123 ~Dlvv~ag 130 (273)
+|+||...
T Consensus 75 ~D~ii~m~ 82 (133)
T PRK13530 75 ADLVVTLC 82 (133)
T ss_pred CCEEEEec
Confidence 89998764
No 148
>COG2243 CobF Precorrin-2 methylase [Coenzyme metabolism]
Probab=40.27 E-value=3e+02 Score=25.28 Aligned_cols=104 Identities=18% Similarity=0.198 Sum_probs=64.0
Q ss_pred CCC-hHhHHHHHHHHHHHhcccccccccCCCCCCceEEEEEECCc---hhHHHHHHhhhcCCCCceEEEEeeCCCCCCCc
Q 024063 14 KWP-REQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQE---HCLVDFLYGWQEGKLPVEITCVISNHDRGPNS 89 (273)
Q Consensus 14 ~~~-~~~l~~~f~~l~~~~~~~~~~~r~~~~~~~~kiav~~Sg~g---~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~ 89 (273)
..+ ++.+++...+.+++. +. + .+.-+.+||+.=|.. +..-.|++.+....+..+++.=| +
T Consensus 65 ~~~~~e~~~~~~~e~a~~v-a~----~---l~~G~~VAf~~lGDP~~YsTf~~l~~~l~~~~~e~e~VPGV--------s 128 (234)
T COG2243 65 TTDMREELEDAWEEAAAEV-AA----E---LEAGRDVAFLTLGDPTFYSTFMYLLERLRERGFEVEVVPGV--------S 128 (234)
T ss_pred CCchHHHHHHHHHHHHHHH-HH----H---HHcCCeEEEEEccCccHHHHHHHHHHHhhccCCceEEeCCc--------c
Confidence 444 677777777777654 11 1 224468899887764 56666777665543444543323 3
Q ss_pred HHHHHHHHcCCCEEEEcCC-----CCchHHHHHHHhcCCCEEEEEeecC
Q 024063 90 HVIRFLERHGIPYHYLCAK-----ENEREEELLELVQNTDFLVLARYMQ 133 (273)
Q Consensus 90 ~~~~~a~~~gIp~~~~~~~-----~~~~~~~~~~~l~~~Dlvv~ag~~~ 133 (273)
++...|..+|+|+...+.. ....++++.+.+.+.|.+|+.-=++
T Consensus 129 S~~a~aa~~~~pL~~g~~~l~Vlp~t~~~~~~~~~l~~~d~~VvMK~~~ 177 (234)
T COG2243 129 SFSACAARLGVPLVEGDDSLSVLPATRPDEELERALADFDTAVVMKVGR 177 (234)
T ss_pred hHHHHHHHhCCceeccCceeEEEeccCchhhHHhHHhhCCeEEEEecCC
Confidence 4678899999999765432 1123456666777888888764333
No 149
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=40.25 E-value=3.2e+02 Score=25.62 Aligned_cols=113 Identities=19% Similarity=0.230 Sum_probs=67.0
Q ss_pred HHHHHHHcCCCEEEEcCCCCc-----hHHHHHHHhcCCCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccC
Q 024063 91 VIRFLERHGIPYHYLCAKENE-----REEELLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMIL 165 (273)
Q Consensus 91 ~~~~a~~~gIp~~~~~~~~~~-----~~~~~~~~l~~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il 165 (273)
+.++|+..|..+..++..... ...++.++++++|+|++.- |+ +-.-++++
T Consensus 160 vA~~~~~fgm~V~~~d~~~~~~~~~~~~~~l~ell~~sDvv~lh~-----Pl--------------------t~~T~~li 214 (311)
T PRK08410 160 VAKIAQAFGAKVVYYSTSGKNKNEEYERVSLEELLKTSDIISIHA-----PL--------------------NEKTKNLI 214 (311)
T ss_pred HHHHHhhcCCEEEEECCCccccccCceeecHHHHhhcCCEEEEeC-----CC--------------------Cchhhccc
Confidence 455556666666555421100 0124566777899998763 32 22244699
Q ss_pred ChhHHhhcCCCeeEeecCCCCCCCCC----hHHHHHHHhCCCEeEEEEEEecCccCCCCeeEE---EEEecCCCC
Q 024063 166 SGKFLRSYGKDVINIHHGLLPSFKGG----KPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQ---MVERVSHRD 233 (273)
Q Consensus 166 ~~~~l~~~~~~~iNiHpslLP~yRG~----~p~~~ai~~G~~~~GvT~H~~~~~~D~G~Ii~Q---~~~~I~~~d 233 (273)
..+.++..+.+.+=+--| ||. ..+..|+.+|.-..|.-++.-++-...-|.+.. ..+-+.|+-
T Consensus 215 ~~~~~~~Mk~~a~lIN~a-----RG~vVDe~AL~~AL~~g~i~AaLDV~~~EP~~~~~pL~~~~~~~NvilTPH~ 284 (311)
T PRK08410 215 AYKELKLLKDGAILINVG-----RGGIVNEKDLAKALDEKDIYAGLDVLEKEPMEKNHPLLSIKNKEKLLITPHI 284 (311)
T ss_pred CHHHHHhCCCCeEEEECC-----CccccCHHHHHHHHHcCCeEEEEecCCCCCCCCCChhhccCCCCCEEECCcc
Confidence 999999998774433333 774 578888999964467777666654333344432 245566654
No 150
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=40.07 E-value=1.1e+02 Score=29.57 Aligned_cols=74 Identities=23% Similarity=0.310 Sum_probs=38.3
Q ss_pred CceEEEEEECC-chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCC---CCch-HHHHHHHh
Q 024063 46 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAK---ENER-EEELLELV 120 (273)
Q Consensus 46 ~~kiav~~Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~---~~~~-~~~~~~~l 120 (273)
++||+|+|+|. |+.|..++.. +| +++. +...++ .-+.+.-+.+ -...+++.. .+.+ ..++.+.+
T Consensus 1 ~~kI~ViGaGswGTALA~~la~--ng---~~V~-lw~r~~----~~~~~i~~~~-~N~~yLp~i~lp~~l~at~Dl~~a~ 69 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLAR--NG---HEVR-LWGRDE----EIVAEINETR-ENPKYLPGILLPPNLKATTDLAEAL 69 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHh--cC---CeeE-EEecCH----HHHHHHHhcC-cCccccCCccCCcccccccCHHHHH
Confidence 47999999996 7888776653 22 4543 444431 1122222221 111112211 1111 23466667
Q ss_pred cCCCEEEEEe
Q 024063 121 QNTDFLVLAR 130 (273)
Q Consensus 121 ~~~Dlvv~ag 130 (273)
+++|++|++-
T Consensus 70 ~~ad~iv~av 79 (329)
T COG0240 70 DGADIIVIAV 79 (329)
T ss_pred hcCCEEEEEC
Confidence 6899998773
No 151
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=39.98 E-value=2.6e+02 Score=24.69 Aligned_cols=98 Identities=12% Similarity=0.022 Sum_probs=49.1
Q ss_pred HHHHHHHHcCCCEEEEc-CCCC--chHHHHHHHh---c--CCCEEEEEe-ecCCcchhhHhhhhhhhhhhhcccCccccc
Q 024063 90 HVIRFLERHGIPYHYLC-AKEN--EREEELLELV---Q--NTDFLVLAR-YMQPVPLQKEAYLGYKLLESLSSKGSLTSY 160 (273)
Q Consensus 90 ~~~~~a~~~gIp~~~~~-~~~~--~~~~~~~~~l---~--~~Dlvv~ag-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y 160 (273)
...++|+++|+++...- .... .+.+++.+.+ . .+|.+.++- .+...|.+-..+ ++.+++..++..+.+|
T Consensus 119 ~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~l--i~~l~~~~~~~~~~~H 196 (265)
T cd03174 119 EAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLKDTVGLATPEEVAEL--VKALREALPDVPLGLH 196 (265)
T ss_pred HHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEechhcCCcCHHHHHHH--HHHHHHhCCCCeEEEE
Confidence 35678899999876543 2222 2333333333 2 677776642 233334321111 2344444444555555
Q ss_pred ccc---cCChhHHhhcCCCeeEeecCCCCCCC
Q 024063 161 FNM---ILSGKFLRSYGKDVINIHHGLLPSFK 189 (273)
Q Consensus 161 ~~~---il~~~~l~~~~~~~iNiHpslLP~yR 189 (273)
++. +--.+.+.....|+-.+|.|+.+-.+
T Consensus 197 ~Hn~~gla~an~laA~~aG~~~id~s~~G~G~ 228 (265)
T cd03174 197 THNTLGLAVANSLAALEAGADRVDGSVNGLGE 228 (265)
T ss_pred eCCCCChHHHHHHHHHHcCCCEEEeccccccc
Confidence 552 33344444455566666666655544
No 152
>PRK00973 glucose-6-phosphate isomerase; Provisional
Probab=39.88 E-value=84 Score=31.43 Aligned_cols=61 Identities=10% Similarity=0.078 Sum_probs=35.3
Q ss_pred CCCceEEEEEECCchhHHHH------HHhhh-cC-CCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCC
Q 024063 44 DPKYKVAVLASKQEHCLVDF------LYGWQ-EG-KLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAK 108 (273)
Q Consensus 44 ~~~~kiav~~Sg~g~~l~~l------l~~~~-~~-~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~ 108 (273)
++..-..+.+|++|++++.+ .+.++ .| .....+ .++|++++ ..+.++|+++|++++.++..
T Consensus 130 ~~~~Tl~iviSKSGtT~ET~~~f~~~~~~l~~~g~~~~~~~-vaiTd~~~---g~L~~~A~~~g~~~f~ip~~ 198 (446)
T PRK00973 130 DLEKTLFNVISKSGNTAETLANYLIIRGILEKLGLDPKKHL-VFTTDPEK---GKLKKIAEKEGYRTLEIPEN 198 (446)
T ss_pred CcccEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCccccceE-EEEcCCCc---cchHHHHHHcCCcEEeeCCC
Confidence 34444566778888654332 22221 11 112344 36676532 24889999999999988743
No 153
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=39.85 E-value=1.2e+02 Score=23.15 Aligned_cols=42 Identities=14% Similarity=0.226 Sum_probs=27.1
Q ss_pred CcHHHHHHHHcCCCEEEE--cCCCCchHHHHHHHhcCCCEEEEE
Q 024063 88 NSHVIRFLERHGIPYHYL--CAKENEREEELLELVQNTDFLVLA 129 (273)
Q Consensus 88 ~~~~~~~a~~~gIp~~~~--~~~~~~~~~~~~~~l~~~Dlvv~a 129 (273)
.....+.++++|...... +.....+...+.+.+.++|+||+.
T Consensus 12 ~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~ 55 (97)
T PF10087_consen 12 ERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVF 55 (97)
T ss_pred HHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEE
Confidence 345678888899887776 211112223477777799998764
No 154
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=39.19 E-value=1.6e+02 Score=24.46 Aligned_cols=52 Identities=12% Similarity=0.130 Sum_probs=33.7
Q ss_pred EEEEEECC--chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEc
Q 024063 49 VAVLASKQ--EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 106 (273)
Q Consensus 49 iav~~Sg~--g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~ 106 (273)
|++|||.+ |++--++++.. + -.++|+++.+++. -..+.+.|++++.++..+.
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~--~-d~f~v~~Lsa~~n---~~~L~~q~~~f~p~~v~i~ 54 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKH--P-DKFEVVALSAGSN---IEKLAEQAREFKPKYVVIA 54 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHC--T-TTEEEEEEEESST---HHHHHHHHHHHT-SEEEES
T ss_pred CEEEcCCcHHHHHHHHHHHhC--C-CceEEEEEEcCCC---HHHHHHHHHHhCCCEEEEc
Confidence 57788643 44444455543 2 2589999988762 3457888999998887765
No 155
>PRK07714 hypothetical protein; Provisional
Probab=39.12 E-value=1.2e+02 Score=23.54 Aligned_cols=57 Identities=16% Similarity=0.208 Sum_probs=32.0
Q ss_pred EEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCC--CcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhc
Q 024063 52 LASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGP--NSHVIRFLERHGIPYHYLCAKENEREEELLELVQ 121 (273)
Q Consensus 52 ~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~--~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~ 121 (273)
+++|...+++ +++.|+ +.+ |+-..|-.+ -..+..+|+.++||++.+.. .+|+-..+-
T Consensus 19 ~v~G~~~v~~----al~~g~--~~l--ViiA~D~s~~~~~ki~~~~~~~~vp~~~~~s-----k~eLG~a~G 77 (100)
T PRK07714 19 VISGEELVLK----EVRSGK--AKL--VLLSEDASVNTTKKITDKCTYYNVPMRKVEN-----RQQLGHAIG 77 (100)
T ss_pred eeecHHHHHH----HHHhCC--ceE--EEEeCCCCHHHHHHHHHHHHhcCCCEEEeCC-----HHHHHHHhC
Confidence 4555444444 444453 344 333333222 25578889999999987653 245666664
No 156
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=38.89 E-value=2.9e+02 Score=24.83 Aligned_cols=58 Identities=14% Similarity=0.175 Sum_probs=37.9
Q ss_pred CCceEEEEEECC-chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEc
Q 024063 45 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 106 (273)
Q Consensus 45 ~~~kiav~~Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~ 106 (273)
..-|+++|+-.. ..|-. ++.....+.-+.+|-.|=|.- .+..+..+|.+++||...+.
T Consensus 108 ~~~rlalFvkd~C~~C~~-~~~~l~a~~~~~Diylvgs~~---dD~~Ir~WA~~~~Idp~~V~ 166 (200)
T TIGR03759 108 GGGRLALFVKDDCVACDA-RVQRLLADNAPLDLYLVGSQG---DDERIRQWANRHQIDPAKVR 166 (200)
T ss_pred CCCeEEEEeCCCChHHHH-HHHHHhcCCCceeEEEecCCC---CHHHHHHHHHHcCCCHHHee
Confidence 346999999744 34533 333333344357776665433 35679999999999987665
No 157
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=38.78 E-value=1.9e+02 Score=27.24 Aligned_cols=105 Identities=13% Similarity=0.096 Sum_probs=55.6
Q ss_pred CCceEEEEEECCc--hhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcC
Q 024063 45 PKYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQN 122 (273)
Q Consensus 45 ~~~kiav~~Sg~g--~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~ 122 (273)
...+++|+|+|.- ..++++... . +.+-+.|+ ++.........+..++.|+++..+.. ..+.+++
T Consensus 127 ~~~~lgiiG~G~qA~~~l~al~~~---~--~~~~v~V~-~r~~~~~~~~~~~~~~~g~~v~~~~~--------~~eav~~ 192 (325)
T TIGR02371 127 DSSVLGIIGAGRQAWTQLEALSRV---F--DLEEVSVY-CRTPSTREKFALRASDYEVPVRAATD--------PREAVEG 192 (325)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhc---C--CCCEEEEE-CCCHHHHHHHHHHHHhhCCcEEEeCC--------HHHHhcc
Confidence 3588999999863 244554432 1 23334444 44221111122333356777665431 2234568
Q ss_pred CCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCCCCCCCCChH
Q 024063 123 TDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKP 193 (273)
Q Consensus 123 ~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~p 193 (273)
+|+|+++--.. -| ++..+.++ ++-.||.=+|.-|.-|-..|
T Consensus 193 aDiVitaT~s~-~P---------------------------~~~~~~l~--~g~~v~~vGs~~p~~~Eld~ 233 (325)
T TIGR02371 193 CDILVTTTPSR-KP---------------------------VVKADWVS--EGTHINAIGADAPGKQELDP 233 (325)
T ss_pred CCEEEEecCCC-Cc---------------------------EecHHHcC--CCCEEEecCCCCcccccCCH
Confidence 99999887443 23 55555442 33456666666676666554
No 158
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=38.45 E-value=1.8e+02 Score=24.92 Aligned_cols=86 Identities=14% Similarity=0.174 Sum_probs=41.9
Q ss_pred EEEEECCchh--HHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHH-------cCCCEEEE-cCCCCchH--H---
Q 024063 50 AVLASKQEHC--LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLER-------HGIPYHYL-CAKENERE--E--- 114 (273)
Q Consensus 50 av~~Sg~g~~--l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~-------~gIp~~~~-~~~~~~~~--~--- 114 (273)
.++.|++||. |..|++.+.. +.......++|..|..+...+.++.+. ..+|-... .... .+. .
T Consensus 2 l~v~gsGGHt~eml~L~~~~~~-~~~~~~~~ivt~~d~~S~~k~~~~~~~~~~~~~~~~~~r~r~v~q~~-~~~~~~~l~ 79 (170)
T PF08660_consen 2 LVVLGSGGHTAEMLRLLKALDN-DRYQPRTYIVTEGDKQSRSKAEQLEKSSSKRHKILEIPRAREVGQSY-LTSIFTTLR 79 (170)
T ss_pred EEEEcCcHHHHHHHHHHHHhhh-hcCCCcEEEEEcCCcccHHHHHHHHHhccccceeeccceEEEechhh-HhhHHHHHH
Confidence 4445555664 4456666622 223445668888876543334444333 23443221 1110 111 1
Q ss_pred HHHH---Hh-c-CCCEEEEEeecCCcch
Q 024063 115 ELLE---LV-Q-NTDFLVLARYMQPVPL 137 (273)
Q Consensus 115 ~~~~---~l-~-~~Dlvv~ag~~~~~p~ 137 (273)
.+.. .+ + +||+|++-|=+-=+|.
T Consensus 80 ~~~~~~~il~r~rPdvii~nGpg~~vp~ 107 (170)
T PF08660_consen 80 AFLQSLRILRRERPDVIISNGPGTCVPV 107 (170)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCceeeHH
Confidence 1111 12 2 8999999997765553
No 159
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=38.35 E-value=1e+02 Score=27.50 Aligned_cols=110 Identities=17% Similarity=0.161 Sum_probs=52.3
Q ss_pred CceEEEEEECC-chhH-HHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCC
Q 024063 46 KYKVAVLASKQ-EHCL-VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 123 (273)
Q Consensus 46 ~~kiav~~Sg~-g~~l-~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~ 123 (273)
++||+|+|.|. |+.+ ..+.+. |. ....+.++ +++ .....++++.+|+.+. .. .+ +.+.++
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~---g~-~~~~v~v~-~r~---~~~~~~~~~~~g~~~~--~~-----~~---~~~~~a 63 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLAS---GV-PAKDIIVS-DPS---PEKRAALAEEYGVRAA--TD-----NQ---EAAQEA 63 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhC---CC-CcceEEEE-cCC---HHHHHHHHHhcCCeec--CC-----hH---HHHhcC
Confidence 57899999876 4433 333332 31 11223334 332 1234445555676432 11 11 234578
Q ss_pred CEEEEEeecCCcchhhHhhhhhhhhhhhcc---cCcccccccccCChhHHhhc-C--CCeeEeecCC
Q 024063 124 DFLVLARYMQPVPLQKEAYLGYKLLESLSS---KGSLTSYFNMILSGKFLRSY-G--KDVINIHHGL 184 (273)
Q Consensus 124 Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~---~~~~~~y~~~il~~~~l~~~-~--~~~iNiHpsl 184 (273)
|+|+++--. .... +.++.+.+ +..+|+-. =++.+.++.. + ..++..||..
T Consensus 64 dvVil~v~~-------~~~~--~v~~~l~~~~~~~vvs~~~--gi~~~~l~~~~~~~~~iv~~~P~~ 119 (267)
T PRK11880 64 DVVVLAVKP-------QVME--EVLSELKGQLDKLVVSIAA--GVTLARLERLLGADLPVVRAMPNT 119 (267)
T ss_pred CEEEEEcCH-------HHHH--HHHHHHHhhcCCEEEEecC--CCCHHHHHHhcCCCCcEEEecCCc
Confidence 999887511 1111 22332322 33333332 2355566654 2 3589999964
No 160
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=38.25 E-value=1.3e+02 Score=27.15 Aligned_cols=66 Identities=15% Similarity=0.059 Sum_probs=37.8
Q ss_pred CceEEEEEECC-chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCCC
Q 024063 46 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 124 (273)
Q Consensus 46 ~~kiav~~Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~D 124 (273)
|++++++|.|+ |+.|...+.. . .+|| +|.++.. +......++..++-+... +..+..+.+|
T Consensus 1 m~~~~i~GtGniG~alA~~~a~--a---g~eV--~igs~r~--~~~~~a~a~~l~~~i~~~---------~~~dA~~~aD 62 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAK--A---GHEV--IIGSSRG--PKALAAAAAALGPLITGG---------SNEDAAALAD 62 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHh--C---CCeE--EEecCCC--hhHHHHHHHhhccccccC---------ChHHHHhcCC
Confidence 58999999997 6665544332 1 2665 4555532 234455566666553321 1223444789
Q ss_pred EEEEE
Q 024063 125 FLVLA 129 (273)
Q Consensus 125 lvv~a 129 (273)
+||++
T Consensus 63 VVvLA 67 (211)
T COG2085 63 VVVLA 67 (211)
T ss_pred EEEEe
Confidence 99887
No 161
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=37.73 E-value=2e+02 Score=28.27 Aligned_cols=55 Identities=13% Similarity=0.044 Sum_probs=33.4
Q ss_pred ceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHH---HHHHHhcCCCEEEEEeec
Q 024063 74 VEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREE---ELLELVQNTDFLVLARYM 132 (273)
Q Consensus 74 ~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~---~~~~~l~~~Dlvv~ag~~ 132 (273)
..+++=|.+..+ .=.+.|+..|+++...+.-....++ +..+.++++|.+|++++.
T Consensus 291 ~~v~~g~l~~~d----~d~~~a~~l~~~~~~~~pf~~i~~~~~~~a~~~~~~~~~vi~~~~~ 348 (402)
T PRK09536 291 ASVSVGPVPEGD----TAAETAARVGCEAVTVPPFKPIEDSTRAEATDLIIAADAVVAAGVA 348 (402)
T ss_pred CeEEEecCcCcc----hhHHHHHHcCCCEEeeCCCCCCCHHHHHHHHHHHHhCCEEEECCCc
Confidence 556544444421 2257889999999876532223333 333444589999998854
No 162
>PRK11579 putative oxidoreductase; Provisional
Probab=37.62 E-value=1.7e+02 Score=27.49 Aligned_cols=36 Identities=14% Similarity=-0.022 Sum_probs=20.0
Q ss_pred CCceEEEEEECCchhHHHHHHhhhcCCCCceEEEEeeC
Q 024063 45 PKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 82 (273)
Q Consensus 45 ~~~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~ 82 (273)
++.||+|+|.|....- ..+.++... .++++++|+..
T Consensus 3 ~~irvgiiG~G~i~~~-~~~~~~~~~-~~~~l~av~d~ 38 (346)
T PRK11579 3 DKIRVGLIGYGYASKT-FHAPLIAGT-PGLELAAVSSS 38 (346)
T ss_pred CcceEEEECCCHHHHH-HHHHHHhhC-CCCEEEEEECC
Confidence 4589999999864320 111222111 14788887653
No 163
>PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B.
Probab=37.33 E-value=55 Score=28.81 Aligned_cols=53 Identities=21% Similarity=0.266 Sum_probs=34.7
Q ss_pred ChHhHHHHHHHHHHHhcccccccccCCCCCCceEEEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCC
Q 024063 16 PREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHD 84 (273)
Q Consensus 16 ~~~~l~~~f~~l~~~~~~~~~~~r~~~~~~~~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~ 84 (273)
|++.+++++.-|.+ .|..+ ..||+++|...|.-+..++... -+ +|.+||+..+
T Consensus 2 pLEyfe~Ai~~L~~----------~p~v~-~~~Igi~G~SkGaelALllAs~-~~----~i~avVa~~p 54 (213)
T PF08840_consen 2 PLEYFEEAIDWLKS----------HPEVD-PDKIGIIGISKGAELALLLASR-FP----QISAVVAISP 54 (213)
T ss_dssp ECHHHHHHHHHHHC----------STTB---SSEEEEEETHHHHHHHHHHHH-SS----SEEEEEEES-
T ss_pred ChHHHHHHHHHHHh----------CCCCC-CCCEEEEEECHHHHHHHHHHhc-CC----CccEEEEeCC
Confidence 56788888877775 22222 3799999999888776555542 22 6777777653
No 164
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=36.96 E-value=1.3e+02 Score=28.32 Aligned_cols=63 Identities=16% Similarity=0.277 Sum_probs=35.5
Q ss_pred chhHHHHHHhhhcCCCCceEEEEeeC-CCCCCC-cHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhc--CCCEEEE
Q 024063 57 EHCLVDFLYGWQEGKLPVEITCVISN-HDRGPN-SHVIRFLERHGIPYHYLCAKENEREEELLELVQ--NTDFLVL 128 (273)
Q Consensus 57 g~~l~~ll~~~~~~~l~~~i~~Vvs~-~~~~~~-~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~--~~Dlvv~ 128 (273)
++.+..|..+.++|+ +.++ +++. ++...+ .-......++|||+..+.. ..+...++ ++|.|++
T Consensus 137 ~tv~~~l~~A~~~g~-~~~V--~v~EsrP~~~G~~~~a~~L~~~gI~vtlI~D------sa~~~~m~~~~vd~Vlv 203 (303)
T TIGR00524 137 GTALGVIRSAWEDGK-RIRV--IACETRPRNQGSRLTAWELMQDGIDVTLITD------SMAAYFMQKGEIDAVIV 203 (303)
T ss_pred chHHHHHHHHHHcCC-ceEE--EECCCCCccchHHHHHHHHHHCCCCEEEECh------hHHHHHccccCCCEEEE
Confidence 344555556666654 3443 3442 322222 1234556679999998762 34556666 7888865
No 165
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=36.77 E-value=1.8e+02 Score=27.37 Aligned_cols=71 Identities=11% Similarity=0.069 Sum_probs=38.6
Q ss_pred CCceEEEEEECCc--hhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHH----cCCCEEEEcCCCCchHHHHHH
Q 024063 45 PKYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLER----HGIPYHYLCAKENEREEELLE 118 (273)
Q Consensus 45 ~~~kiav~~Sg~g--~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~----~gIp~~~~~~~~~~~~~~~~~ 118 (273)
...+++++|+|.- ..+.++... . +.+-+.| .++.. ....++|++ .|+.+..++ ++.+
T Consensus 128 ~~~~v~iiGaG~qA~~~~~al~~~--~---~i~~v~V-~~R~~---~~a~~~a~~~~~~~g~~v~~~~--------~~~~ 190 (326)
T TIGR02992 128 DSSVVAIFGAGMQARLQLEALTLV--R---DIRSARI-WARDS---AKAEALALQLSSLLGIDVTAAT--------DPRA 190 (326)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHh--C---CccEEEE-ECCCH---HHHHHHHHHHHhhcCceEEEeC--------CHHH
Confidence 3478999999863 344444332 1 2333334 45532 234445443 377665432 1234
Q ss_pred HhcCCCEEEEEeec
Q 024063 119 LVQNTDFLVLARYM 132 (273)
Q Consensus 119 ~l~~~Dlvv~ag~~ 132 (273)
.+.++|+|+.+--.
T Consensus 191 av~~aDiVvtaT~s 204 (326)
T TIGR02992 191 AMSGADIIVTTTPS 204 (326)
T ss_pred HhccCCEEEEecCC
Confidence 45689999998744
No 166
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=36.41 E-value=1.8e+02 Score=27.37 Aligned_cols=74 Identities=18% Similarity=0.254 Sum_probs=45.9
Q ss_pred EEECCch----hHHHHHHhhhcCCCCceEEEEeeCCCCC----CCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhc--
Q 024063 52 LASKQEH----CLVDFLYGWQEGKLPVEITCVISNHDRG----PNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ-- 121 (273)
Q Consensus 52 ~~Sg~g~----~l~~ll~~~~~~~l~~~i~~Vvs~~~~~----~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~-- 121 (273)
+.|-..+ ....|++.++.| +-+++||+---| ++..+.+.|.++||++..++-. +.-+..+..
T Consensus 55 ~is~h~hne~~~~~~li~~l~~g----~~valVSDAG~P~ISDPG~~LV~~a~~~gi~V~~lPG~----sA~~tAL~~SG 126 (275)
T COG0313 55 LISYHEHNEKEKLPKLIPLLKKG----KSVALVSDAGTPLISDPGYELVRAAREAGIRVVPLPGP----SALITALSASG 126 (275)
T ss_pred eecccCCcHHHHHHHHHHHHhcC----CeEEEEecCCCCcccCccHHHHHHHHHcCCcEEecCCc----cHHHHHHHHcC
Confidence 5555443 445566666665 357888876433 3567899999999999988732 122333333
Q ss_pred -CCCEEEEEeecC
Q 024063 122 -NTDFLVLARYMQ 133 (273)
Q Consensus 122 -~~Dlvv~ag~~~ 133 (273)
..|=.+..||.-
T Consensus 127 l~~~~F~F~GFLP 139 (275)
T COG0313 127 LPSQRFLFEGFLP 139 (275)
T ss_pred CCCCCeeEeccCC
Confidence 345555677754
No 167
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=36.18 E-value=1.8e+02 Score=28.82 Aligned_cols=80 Identities=14% Similarity=0.247 Sum_probs=45.9
Q ss_pred CceEEEEE-ECCc--hhHHHHHHhhh--cCCCCceEEEEeeCCC-CCC-CcHHHHHHHHcCCCEEEEcCCCCchHHHHHH
Q 024063 46 KYKVAVLA-SKQE--HCLVDFLYGWQ--EGKLPVEITCVISNHD-RGP-NSHVIRFLERHGIPYHYLCAKENEREEELLE 118 (273)
Q Consensus 46 ~~kiav~~-Sg~g--~~l~~ll~~~~--~~~l~~~i~~Vvs~~~-~~~-~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~ 118 (273)
+.-|+++| +|.| +.|..|..... .+ ..=+++||-.. +-. --.+..||+-.|+|+.++... .++.+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~---~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~-----~el~~ 274 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKK---KKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSP-----KELAE 274 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhcc---CcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCH-----HHHHH
Confidence 34444444 4555 45665544332 23 23356666421 111 134789999999999987632 34444
Q ss_pred H---hcCCCEEEEEeecC
Q 024063 119 L---VQNTDFLVLARYMQ 133 (273)
Q Consensus 119 ~---l~~~Dlvv~ag~~~ 133 (273)
. ++++|+|++---|+
T Consensus 275 ai~~l~~~d~ILVDTaGr 292 (407)
T COG1419 275 AIEALRDCDVILVDTAGR 292 (407)
T ss_pred HHHHhhcCCEEEEeCCCC
Confidence 4 44899999866665
No 168
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=36.09 E-value=1.6e+02 Score=23.58 Aligned_cols=58 Identities=16% Similarity=0.169 Sum_probs=32.6
Q ss_pred EEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCC--CcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhc
Q 024063 52 LASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGP--NSHVIRFLERHGIPYHYLCAKENEREEELLELVQ 121 (273)
Q Consensus 52 ~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~--~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~ 121 (273)
+++|.-.++.++ +.|+ +..||...|-+. -..+..+|+.+|||++.+.. ..+|+-..+-
T Consensus 26 lv~G~~~vlkal----k~gk----aklViiA~D~~~~~kkki~~~~~~~~Vpv~~~~~----t~~eLG~A~G 85 (108)
T PTZ00106 26 YTLGTKSTLKAL----RNGK----AKLVIISNNCPPIRRSEIEYYAMLSKTGVHHYAG----NNNDLGTACG 85 (108)
T ss_pred eeecHHHHHHHH----HcCC----eeEEEEeCCCCHHHHHHHHHHHhhcCCCEEEeCC----CHHHHHHHhC
Confidence 566655555554 3343 334444443322 24578889999999986431 1356666664
No 169
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=35.97 E-value=1.6e+02 Score=26.69 Aligned_cols=66 Identities=14% Similarity=0.144 Sum_probs=44.8
Q ss_pred EEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhc-CCCEEE
Q 024063 50 AVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ-NTDFLV 127 (273)
Q Consensus 50 av~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~-~~Dlvv 127 (273)
+.+|.|+-.+.+..-+++..| ++ .+||.. .+..+.++|+++|||+..-. ....|+.+.++ ++|++=
T Consensus 71 ~~vGaGTVl~~e~a~~a~~aG---A~--FiVsP~---~~~~v~~~~~~~~i~~iPG~----~TpsEi~~A~~~Ga~~vK 137 (222)
T PRK07114 71 MILGVGSIVDAATAALYIQLG---AN--FIVTPL---FNPDIAKVCNRRKVPYSPGC----GSLSEIGYAEELGCEIVK 137 (222)
T ss_pred eEEeeEeCcCHHHHHHHHHcC---CC--EEECCC---CCHHHHHHHHHcCCCEeCCC----CCHHHHHHHHHCCCCEEE
Confidence 357777766666665555555 33 367765 45679999999999997422 23457777777 888874
No 170
>KOG4435 consensus Predicted lipid kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=35.53 E-value=2e+02 Score=28.90 Aligned_cols=33 Identities=21% Similarity=0.446 Sum_probs=24.1
Q ss_pred HhHHHHHHHHHHHhcccccccccCCCCCCceEEEEEE
Q 024063 18 EQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLAS 54 (273)
Q Consensus 18 ~~l~~~f~~l~~~~~~~~~~~r~~~~~~~~kiav~~S 54 (273)
+++++.++..|..+ +++.+.|..++ +|+-|+.-
T Consensus 36 ~~~rre~a~~aq~~---g~t~vpp~~~~-Kkv~V~~N 68 (535)
T KOG4435|consen 36 QGIRREYAKIAQKY---GETTVPPETRP-KKVFVLVN 68 (535)
T ss_pred HHHHHHHHHHHHHh---ccccCCccccc-ceEEEEec
Confidence 67888899999855 66665665555 78888874
No 171
>cd00115 LMWPc Substituted updates: Aug 22, 2001
Probab=35.46 E-value=55 Score=26.58 Aligned_cols=81 Identities=16% Similarity=0.167 Sum_probs=42.2
Q ss_pred ceEEEEEECCc--hhH-HHHHHhhhcC-CCCceEEEEeeCC-CCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhc
Q 024063 47 YKVAVLASKQE--HCL-VDFLYGWQEG-KLPVEITCVISNH-DRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ 121 (273)
Q Consensus 47 ~kiav~~Sg~g--~~l-~~ll~~~~~~-~l~~~i~~Vvs~~-~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~ 121 (273)
+||.|+.+|+- |.+ ++++.....+ .+.+.-.++.... ..+.+..+.+.++++||++.....+ ...+. .++
T Consensus 1 ~~iLfvc~~N~~RS~mAEai~~~~~~~~~~~v~SaG~~~~~~g~~~~~~a~~~l~~~Gid~s~h~s~-~l~~~----~~~ 75 (141)
T cd00115 1 KKVLFVCTGNICRSPMAEAIFRHLAPKLDIEVDSAGTSGWHVGGRPDPRAIAVLAEHGIDISGHRAR-QLTED----DFD 75 (141)
T ss_pred CeEEEEecChhhhhHHHHHHHHHHhhhCCEEEECCCCCCccCCCCCCHHHHHHHHHcCCCcccCeee-eCCHH----HHH
Confidence 47777777763 334 5566654332 2211212222210 1234566788899999997421111 11111 234
Q ss_pred CCCEEEEEeec
Q 024063 122 NTDFLVLARYM 132 (273)
Q Consensus 122 ~~Dlvv~ag~~ 132 (273)
++|+||...-.
T Consensus 76 ~aDlIi~m~~~ 86 (141)
T cd00115 76 EFDLIITMDES 86 (141)
T ss_pred hCCEEEEECHH
Confidence 78999987643
No 172
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=34.70 E-value=1.6e+02 Score=26.66 Aligned_cols=58 Identities=24% Similarity=0.308 Sum_probs=38.3
Q ss_pred CceEEEEEECCc--hhHHHHHHhhhcCCCCceEEEEeeCCCCCC-----CcHHHHHHHHcCCCEEEEc
Q 024063 46 KYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP-----NSHVIRFLERHGIPYHYLC 106 (273)
Q Consensus 46 ~~kiav~~Sg~g--~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~-----~~~~~~~a~~~gIp~~~~~ 106 (273)
..||+|-+||+- +.|-.++...... .++.+|-.++.-.. ...+..+|+..|+|..+..
T Consensus 21 ~~~ilVavSGGkDS~~ll~~L~~l~~~---~~~~a~~Vd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 85 (298)
T COG0037 21 EYKILVAVSGGKDSLALLHLLKELGRR---IEVEAVHVDHGLRGYSDQEAELVEKLCEKLGIPLIVER 85 (298)
T ss_pred CCeEEEEeCCChHHHHHHHHHHHhccC---ceEEEEEecCCCCCccchHHHHHHHHHHHhCCceEEEE
Confidence 589999999974 3444455543322 56777766664322 2347889999999987765
No 173
>COG0120 RpiA Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=34.56 E-value=84 Score=28.73 Aligned_cols=49 Identities=16% Similarity=0.222 Sum_probs=33.9
Q ss_pred EEEECCchhHHHHHHhhhcCCCC--ceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEc
Q 024063 51 VLASKQEHCLVDFLYGWQEGKLP--VEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 106 (273)
Q Consensus 51 v~~Sg~g~~l~~ll~~~~~~~l~--~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~ 106 (273)
++|-|+||....+++++.+ ... ..+.+|-|+.. -...|+++|||+...+
T Consensus 23 viGlGTGST~~~fI~~Lg~-~~~~e~~i~~V~TS~~------t~~l~~~~GI~v~~l~ 73 (227)
T COG0120 23 VIGLGTGSTAAYFIEALGR-RVKGELDIGGVPTSFQ------TEELARELGIPVSSLN 73 (227)
T ss_pred EEEEcCcHHHHHHHHHHHH-hhccCccEEEEeCCHH------HHHHHHHcCCeecCcc
Confidence 4666788887777777642 111 35777776652 3688999999998765
No 174
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=34.01 E-value=2.8e+02 Score=26.60 Aligned_cols=77 Identities=18% Similarity=0.329 Sum_probs=47.2
Q ss_pred ceEEEEEECCc--hhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCc----------hHH
Q 024063 47 YKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENE----------REE 114 (273)
Q Consensus 47 ~kiav~~Sg~g--~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~----------~~~ 114 (273)
|||-|=+.... +-++.++..+++. +++| +||.++. ..+.++++.+|+++..+...... |..
T Consensus 1 MkIwiDi~~p~hvhfFk~~I~eL~~~--GheV--~it~R~~---~~~~~LL~~yg~~y~~iG~~g~~~~~Kl~~~~~R~~ 73 (335)
T PF04007_consen 1 MKIWIDITHPAHVHFFKNIIRELEKR--GHEV--LITARDK---DETEELLDLYGIDYIVIGKHGDSLYGKLLESIERQY 73 (335)
T ss_pred CeEEEECCCchHHHHHHHHHHHHHhC--CCEE--EEEEecc---chHHHHHHHcCCCeEEEcCCCCCHHHHHHHHHHHHH
Confidence 46666664443 3456666665543 3676 4565643 34688999999999988743221 223
Q ss_pred HHHHHhc--CCCEEEEEe
Q 024063 115 ELLELVQ--NTDFLVLAR 130 (273)
Q Consensus 115 ~~~~~l~--~~Dlvv~ag 130 (273)
++.+.+. +||+++..+
T Consensus 74 ~l~~~~~~~~pDv~is~~ 91 (335)
T PF04007_consen 74 KLLKLIKKFKPDVAISFG 91 (335)
T ss_pred HHHHHHHhhCCCEEEecC
Confidence 4555554 799998544
No 175
>PRK07589 ornithine cyclodeaminase; Validated
Probab=33.61 E-value=3.6e+02 Score=25.90 Aligned_cols=107 Identities=16% Similarity=0.148 Sum_probs=60.1
Q ss_pred CCceEEEEEECCc--hhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcC
Q 024063 45 PKYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQN 122 (273)
Q Consensus 45 ~~~kiav~~Sg~g--~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~ 122 (273)
...+++++|+|.- +.+++++... +.+=+.|+ ++.........+..++.|+++..+++ ..+.+++
T Consensus 128 da~~l~iiGaG~QA~~~l~a~~~vr-----~i~~V~v~-~r~~~~a~~~~~~~~~~~~~v~~~~~--------~~~av~~ 193 (346)
T PRK07589 128 DSRTMALIGNGAQSEFQALAFKALL-----GIEEIRLY-DIDPAATAKLARNLAGPGLRIVACRS--------VAEAVEG 193 (346)
T ss_pred CCcEEEEECCcHHHHHHHHHHHHhC-----CceEEEEE-eCCHHHHHHHHHHHHhcCCcEEEeCC--------HHHHHhc
Confidence 4578999999863 4555555532 22333344 44211112233333445787776431 3345668
Q ss_pred CCEEEEEeecC-CcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCCCCCCCCChHH
Q 024063 123 TDFLVLARYMQ-PVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPA 194 (273)
Q Consensus 123 ~Dlvv~ag~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~p~ 194 (273)
+|+|+.+.-.. ..| +++.+.++ ++-.||.=+|.-|.-|-..+-
T Consensus 194 ADIIvtaT~S~~~~P---------------------------vl~~~~lk--pG~hV~aIGs~~p~~~Eld~~ 237 (346)
T PRK07589 194 ADIITTVTADKTNAT---------------------------ILTDDMVE--PGMHINAVGGDCPGKTELHPD 237 (346)
T ss_pred CCEEEEecCCCCCCc---------------------------eecHHHcC--CCcEEEecCCCCCCcccCCHH
Confidence 99999987432 113 56665553 344677777888877766543
No 176
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=33.44 E-value=3.9e+02 Score=24.59 Aligned_cols=74 Identities=14% Similarity=0.254 Sum_probs=38.3
Q ss_pred ceEEEEE-ECCc--hhHHHHHHhhh-c-CCCCceEEEEeeCCCCCC--CcHHHHHHHHcCCCEEEEcCCCCchHHHHHHH
Q 024063 47 YKVAVLA-SKQE--HCLVDFLYGWQ-E-GKLPVEITCVISNHDRGP--NSHVIRFLERHGIPYHYLCAKENEREEELLEL 119 (273)
Q Consensus 47 ~kiav~~-Sg~g--~~l~~ll~~~~-~-~~l~~~i~~Vvs~~~~~~--~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~ 119 (273)
.-|+|+| +|.| +.+..|...+. . |. .. +++|+..+-.. ...+..+++..|+|+..... ..++.+.
T Consensus 195 ~vi~~vGptGvGKTTt~~kLa~~~~~~~g~--~~-V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~-----~~~l~~~ 266 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAKLAARFVLEHGN--KK-VALITTDTYRIGAVEQLKTYAKILGVPVKVARD-----PKELRKA 266 (282)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHHcCC--Ce-EEEEECCccchhHHHHHHHHHHHhCCceeccCC-----HHHHHHH
Confidence 3455555 4444 33444544332 2 31 34 44555432111 12466788889999975431 2344444
Q ss_pred hc---CCCEEEE
Q 024063 120 VQ---NTDFLVL 128 (273)
Q Consensus 120 l~---~~Dlvv~ 128 (273)
++ +.|+|++
T Consensus 267 l~~~~~~d~vli 278 (282)
T TIGR03499 267 LDRLRDKDLILI 278 (282)
T ss_pred HHHccCCCEEEE
Confidence 43 6898875
No 177
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=33.27 E-value=78 Score=31.20 Aligned_cols=67 Identities=18% Similarity=0.270 Sum_probs=39.6
Q ss_pred CceEEEEEECCchh--HHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcC-CCEEEEcCCCCchHHHHHHHhcC
Q 024063 46 KYKVAVLASKQEHC--LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHG-IPYHYLCAKENEREEELLELVQN 122 (273)
Q Consensus 46 ~~kiav~~Sg~g~~--l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~g-Ip~~~~~~~~~~~~~~~~~~l~~ 122 (273)
.+|+.|+|+|.-.. +..|.+ .|- .+| .|+|+. ......+|+++| ..+..+ +++.+.+.+
T Consensus 181 ~kkvlviGaG~~a~~va~~L~~---~g~--~~I--~V~nRt---~~ra~~La~~~~~~~~~~~--------~~l~~~l~~ 242 (414)
T PRK13940 181 SKNVLIIGAGQTGELLFRHVTA---LAP--KQI--MLANRT---IEKAQKITSAFRNASAHYL--------SELPQLIKK 242 (414)
T ss_pred CCEEEEEcCcHHHHHHHHHHHH---cCC--CEE--EEECCC---HHHHHHHHHHhcCCeEecH--------HHHHHHhcc
Confidence 47899999976432 233322 221 233 567773 234577888775 433321 345666778
Q ss_pred CCEEEEEe
Q 024063 123 TDFLVLAR 130 (273)
Q Consensus 123 ~Dlvv~ag 130 (273)
+|+||.+-
T Consensus 243 aDiVI~aT 250 (414)
T PRK13940 243 ADIIIAAV 250 (414)
T ss_pred CCEEEECc
Confidence 99999876
No 178
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=33.09 E-value=1.5e+02 Score=29.21 Aligned_cols=38 Identities=18% Similarity=0.112 Sum_probs=25.8
Q ss_pred ceEEEEEECCch------hHHHHHHhhhcCCCCceEEEEeeCCCC
Q 024063 47 YKVAVLASKQEH------CLVDFLYGWQEGKLPVEITCVISNHDR 85 (273)
Q Consensus 47 ~kiav~~Sg~g~------~l~~ll~~~~~~~l~~~i~~Vvs~~~~ 85 (273)
+||++.|+.+.. -|..+++.+++-..+++|+ |+|+.+.
T Consensus 1 ~~i~i~G~~g~~N~GdeAil~~ii~~l~~~~p~~~i~-v~S~~P~ 44 (426)
T PRK10017 1 MKLLILGNHTCGNRGDSAILRGLLDAINILNPHAEVD-VMSRYPV 44 (426)
T ss_pred CeEEEEccccCCCccHHHHHHHHHHHHHhhCCCCeEE-EEecCcc
Confidence 578888865432 4677778777666567876 7777654
No 179
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=33.00 E-value=4.3e+02 Score=24.98 Aligned_cols=115 Identities=17% Similarity=0.162 Sum_probs=66.2
Q ss_pred HHHHhcCCCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCCCCCCCCC----
Q 024063 116 LLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG---- 191 (273)
Q Consensus 116 ~~~~l~~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~---- 191 (273)
+.++++++|+|++.- |+ +-.-++++..+.++..+.+.+=+--| ||.
T Consensus 194 l~ell~~sDvv~lh~-----pl--------------------t~~T~~li~~~~l~~mk~ga~lIN~a-----RG~vVde 243 (323)
T PRK15409 194 LDTLLQESDFVCIIL-----PL--------------------TDETHHLFGAEQFAKMKSSAIFINAG-----RGPVVDE 243 (323)
T ss_pred HHHHHHhCCEEEEeC-----CC--------------------ChHHhhccCHHHHhcCCCCeEEEECC-----CccccCH
Confidence 455666899998753 32 22234589999999888774444333 774
Q ss_pred hHHHHHHHhCCC-EeEEEEEEecCccCCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Q 024063 192 KPAKQAFDAGVK-LIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRV 262 (273)
Q Consensus 192 ~p~~~ai~~G~~-~~GvT~H~~~~~~D~G~Ii~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~i~~l~~g~~ 262 (273)
..+..|+.+|.- ..|.-++.-.+--...+.+....+-+.|+-...+...+ ........+.+..+.+|+.
T Consensus 244 ~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pL~~~~nvilTPHia~~t~e~~--~~~~~~~~~ni~~~~~g~~ 313 (323)
T PRK15409 244 NALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSLPNVVAVPHIGSATHETR--YNMAACAVDNLIDALQGKV 313 (323)
T ss_pred HHHHHHHHcCCeeEEEeecCCCCCCCCCchhhcCCCEEEcCcCCCCcHHHH--HHHHHHHHHHHHHHHcCCC
Confidence 567888888863 23444444443322335655566777776543332211 2223444566666667763
No 180
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=32.99 E-value=88 Score=24.70 Aligned_cols=36 Identities=14% Similarity=0.305 Sum_probs=24.7
Q ss_pred HHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCCCEEEEEe
Q 024063 91 VIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLAR 130 (273)
Q Consensus 91 ~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~Dlvv~ag 130 (273)
+.+.|+++|+++..... +..++.+.+.++|++++..
T Consensus 20 m~~~a~~~gi~~~i~a~----~~~e~~~~~~~~Dvill~P 55 (99)
T cd05565 20 LNKGAKERGVPLEAAAG----AYGSHYDMIPDYDLVILAP 55 (99)
T ss_pred HHHHHHHCCCcEEEEEe----eHHHHHHhccCCCEEEEcC
Confidence 67889999999876432 2345555566889887653
No 181
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=32.70 E-value=1.8e+02 Score=27.56 Aligned_cols=54 Identities=17% Similarity=0.213 Sum_probs=32.4
Q ss_pred CceEEEEEECCc-h--hHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEc
Q 024063 46 KYKVAVLASKQE-H--CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 106 (273)
Q Consensus 46 ~~kiav~~Sg~g-~--~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~ 106 (273)
|+||.+-+.|+| | ...++.+.+++. .++|..|-++..- -.+...++|+|+..++
T Consensus 1 ~~~i~~~~GGTGGHi~Pala~a~~l~~~--g~~v~~vg~~~~~-----e~~l~~~~g~~~~~~~ 57 (352)
T PRK12446 1 MKKIVFTGGGSAGHVTPNLAIIPYLKED--NWDISYIGSHQGI-----EKTIIEKENIPYYSIS 57 (352)
T ss_pred CCeEEEEcCCcHHHHHHHHHHHHHHHhC--CCEEEEEECCCcc-----ccccCcccCCcEEEEe
Confidence 357766666665 3 345566666542 4788766655421 1244556789988775
No 182
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=32.04 E-value=5e+02 Score=25.44 Aligned_cols=39 Identities=15% Similarity=0.296 Sum_probs=26.6
Q ss_pred HHHHHHHHcCCCEEEEcCCCCchHHHHHHHh---cCCCEEEEEeecC
Q 024063 90 HVIRFLERHGIPYHYLCAKENEREEELLELV---QNTDFLVLARYMQ 133 (273)
Q Consensus 90 ~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l---~~~Dlvv~ag~~~ 133 (273)
.+..+|+..|+|+..... .+++.+.+ .+.|+|++=.-++
T Consensus 224 QL~~~a~~lgvpv~~~~~-----~~~l~~~L~~~~~~DlVLIDTaGr 265 (388)
T PRK12723 224 QIQTYGDIMGIPVKAIES-----FKDLKEEITQSKDFDLVLVDTIGK 265 (388)
T ss_pred HHHHHhhcCCcceEeeCc-----HHHHHHHHHHhCCCCEEEEcCCCC
Confidence 478889999999876432 13344433 4799999876665
No 183
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=31.97 E-value=1.6e+02 Score=26.50 Aligned_cols=56 Identities=14% Similarity=0.080 Sum_probs=35.6
Q ss_pred CceEEEEEECCc-h-hHHHHHHhhhcCCCCceEEEEeeCCCCCC---CcHHHHHHHHcCCCEEEEc
Q 024063 46 KYKVAVLASKQE-H-CLVDFLYGWQEGKLPVEITCVISNHDRGP---NSHVIRFLERHGIPYHYLC 106 (273)
Q Consensus 46 ~~kiav~~Sg~g-~-~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~---~~~~~~~a~~~gIp~~~~~ 106 (273)
..|++|..||+- | .+..++.. .| .++.+|..+....+ ...+.++|++.|||...++
T Consensus 12 ~~~vlVa~SGGvDSs~ll~la~~--~g---~~v~av~~~~~~~~~~e~~~a~~~a~~lgi~~~ii~ 72 (252)
T TIGR00268 12 FKKVLIAYSGGVDSSLLAAVCSD--AG---TEVLAITVVSPSISPRELEDAIIIAKEIGVNHEFVK 72 (252)
T ss_pred cCCEEEEecCcHHHHHHHHHHHH--hC---CCEEEEEecCCCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 468999999974 3 33334332 23 45777665542211 1446889999999998876
No 184
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=31.83 E-value=1.8e+02 Score=28.64 Aligned_cols=73 Identities=19% Similarity=0.239 Sum_probs=40.6
Q ss_pred CceEEEEEECC-chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHc--CCCEEEEcCCCCchHHHHHHHhcC
Q 024063 46 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERH--GIPYHYLCAKENEREEELLELVQN 122 (273)
Q Consensus 46 ~~kiav~~Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~--gIp~~~~~~~~~~~~~~~~~~l~~ 122 (273)
|+||.|+|+|+ |+.... +..++++ .+|+ +.++. .....+.+... ++....++. ...+++.+++++
T Consensus 1 m~~ilviGaG~Vg~~va~--~la~~~d--~~V~--iAdRs---~~~~~~i~~~~~~~v~~~~vD~---~d~~al~~li~~ 68 (389)
T COG1748 1 MMKILVIGAGGVGSVVAH--KLAQNGD--GEVT--IADRS---KEKCARIAELIGGKVEALQVDA---ADVDALVALIKD 68 (389)
T ss_pred CCcEEEECCchhHHHHHH--HHHhCCC--ceEE--EEeCC---HHHHHHHHhhccccceeEEecc---cChHHHHHHHhc
Confidence 57999999976 333222 2233453 5664 33331 12233333222 466666653 234577888887
Q ss_pred CCEEEEEe
Q 024063 123 TDFLVLAR 130 (273)
Q Consensus 123 ~Dlvv~ag 130 (273)
.|+|+.+.
T Consensus 69 ~d~VIn~~ 76 (389)
T COG1748 69 FDLVINAA 76 (389)
T ss_pred CCEEEEeC
Confidence 79998876
No 185
>PLN02688 pyrroline-5-carboxylate reductase
Probab=31.82 E-value=1.8e+02 Score=25.95 Aligned_cols=65 Identities=15% Similarity=0.353 Sum_probs=33.9
Q ss_pred ceEEEEEECC-chhH-HHHHHhhhcCCC-CceEEEEee-CCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcC
Q 024063 47 YKVAVLASKQ-EHCL-VDFLYGWQEGKL-PVEITCVIS-NHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQN 122 (273)
Q Consensus 47 ~kiav~~Sg~-g~~l-~~ll~~~~~~~l-~~~i~~Vvs-~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~ 122 (273)
+||+|+|.|. |+.+ ..|+++ |.. +.+| +++ ++.. .-.+.+.+.|+.+. .. ..+.+++
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~---g~~~~~~i--~v~~~r~~----~~~~~~~~~g~~~~--~~--------~~e~~~~ 61 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVAS---GVVPPSRI--STADDSNP----ARRDVFQSLGVKTA--AS--------NTEVVKS 61 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHC---CCCCcceE--EEEeCCCH----HHHHHHHHcCCEEe--CC--------hHHHHhc
Confidence 5899999886 4433 344442 321 1243 344 5421 22344556787442 11 1123447
Q ss_pred CCEEEEEe
Q 024063 123 TDFLVLAR 130 (273)
Q Consensus 123 ~Dlvv~ag 130 (273)
+|+|+++-
T Consensus 62 aDvVil~v 69 (266)
T PLN02688 62 SDVIILAV 69 (266)
T ss_pred CCEEEEEE
Confidence 89998886
No 186
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=31.67 E-value=1.6e+02 Score=23.48 Aligned_cols=48 Identities=21% Similarity=0.227 Sum_probs=24.6
Q ss_pred EEEECCch--hHHHHHHhhhcCCCCceEEEEeeCCCCCCC------cHHHHHHHHcCCCEEEEc
Q 024063 51 VLASKQEH--CLVDFLYGWQEGKLPVEITCVISNHDRGPN------SHVIRFLERHGIPYHYLC 106 (273)
Q Consensus 51 v~~Sg~g~--~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~------~~~~~~a~~~gIp~~~~~ 106 (273)
+.+|+..+ -++.|-+ .| +..||+++++... ....+.|+++|+.++.+|
T Consensus 9 ~~vs~Q~~~~d~~~la~---~G-----fktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iP 64 (110)
T PF04273_consen 9 LSVSGQPSPEDLAQLAA---QG-----FKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIP 64 (110)
T ss_dssp EEEECS--HHHHHHHHH---CT-------EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE--
T ss_pred eEECCCCCHHHHHHHHH---CC-----CcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEee
Confidence 35566543 3444443 34 4458898865321 236788999999999888
No 187
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=31.66 E-value=31 Score=31.89 Aligned_cols=57 Identities=21% Similarity=0.276 Sum_probs=41.4
Q ss_pred ceEEEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEE
Q 024063 47 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYH 103 (273)
Q Consensus 47 ~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~ 103 (273)
-+|=|++||...+++.+.+++..++-.+-..+=+-+...-.-..++++..++|||+.
T Consensus 198 v~iPvIASGGaG~~ehf~eaf~~~~adAaLAAsiFH~~~~~i~evK~yL~~~gi~VR 254 (256)
T COG0107 198 VNIPVIASGGAGKPEHFVEAFTEGKADAALAASIFHFGEITIGEVKEYLAEQGIEVR 254 (256)
T ss_pred CCCCEEecCCCCcHHHHHHHHHhcCccHHHhhhhhhcCcccHHHHHHHHHHcCCCcc
Confidence 567789999988999999998887655544444444432233568899999999975
No 188
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=31.61 E-value=99 Score=24.80 Aligned_cols=43 Identities=19% Similarity=0.295 Sum_probs=26.4
Q ss_pred CCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCCCEEEEEe
Q 024063 83 HDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLAR 130 (273)
Q Consensus 83 ~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~Dlvv~ag 130 (273)
...+.+..+.+.++++||++.... .....++. +.++|+||...
T Consensus 42 ~~~~~~~~a~~~l~~~gid~~~~~-s~~l~~~~----~~~~D~Ii~m~ 84 (138)
T PF01451_consen 42 PGEPVDPRAIAVLKEHGIDISGHR-SRQLTEED----LDEADLIITMD 84 (138)
T ss_dssp TTSSSTHHHHHHHHHTTSSCTTSB-BCBGGHHH----HHHSSEEEESS
T ss_pred ccccccchHHHHHHHhCCCcccce-eccccccc----cccCCEEEEcc
Confidence 334446778999999999975211 11122221 34789999765
No 189
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=31.21 E-value=2.3e+02 Score=23.09 Aligned_cols=58 Identities=19% Similarity=0.299 Sum_probs=32.9
Q ss_pred EEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCCC--cHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhc
Q 024063 52 LASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPN--SHVIRFLERHGIPYHYLCAKENEREEELLELVQ 121 (273)
Q Consensus 52 ~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~--~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~ 121 (273)
+.+|.-.++ ++++.|. +.++ +++..-.+.+ ..+..+|+++|||+..+..+ +++-.++.
T Consensus 31 lv~G~~~v~----kaikkgk--akLV-ilA~D~s~~~i~~~~~~lc~~~~Vp~~~~~tk-----~eLG~a~G 90 (122)
T PRK04175 31 IKKGTNETT----KAVERGI--AKLV-VIAEDVDPEEIVAHLPLLCEEKKIPYVYVPSK-----KDLGKAAG 90 (122)
T ss_pred EeEcHHHHH----HHHHcCC--ccEE-EEeCCCChHHHHHHHHHHHHHcCCCEEEECCH-----HHHHHHhC
Confidence 556644444 4444453 4443 3333222222 46889999999999876532 45666664
No 190
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=31.08 E-value=4.2e+02 Score=24.33 Aligned_cols=45 Identities=9% Similarity=0.137 Sum_probs=25.3
Q ss_pred cHHHHHHHHcCCCEEEEcCCCCchH---HHHHHHhc-CCCEEEEEeecC
Q 024063 89 SHVIRFLERHGIPYHYLCAKENERE---EELLELVQ-NTDFLVLARYMQ 133 (273)
Q Consensus 89 ~~~~~~a~~~gIp~~~~~~~~~~~~---~~~~~~l~-~~Dlvv~ag~~~ 133 (273)
..+..|++..|+|++......+..+ +.+..... +.|+|++=.=++
T Consensus 117 ~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~~~~~~D~ViIDT~G~ 165 (272)
T TIGR00064 117 EQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKARNIDVVLIDTAGR 165 (272)
T ss_pred HHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 3467789999999875432111111 11222222 689998766554
No 191
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=31.08 E-value=46 Score=26.76 Aligned_cols=34 Identities=6% Similarity=0.240 Sum_probs=21.3
Q ss_pred ceEEEEEE-CC-chhHHHHHHhhhcCCCCceEEEEeeCCC
Q 024063 47 YKVAVLAS-KQ-EHCLVDFLYGWQEGKLPVEITCVISNHD 84 (273)
Q Consensus 47 ~kiav~~S-g~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~~ 84 (273)
+||++.|. |+ |..+...+.. .. ..++++++..++
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~--~~--~~~lv~~v~~~~ 36 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILE--SP--GFELVGAVDRKP 36 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHH--ST--TEEEEEEEETTT
T ss_pred CEEEEECCCCHHHHHHHHHHHh--cC--CcEEEEEEecCC
Confidence 58888886 55 4444333332 12 489999988775
No 192
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=31.08 E-value=1.9e+02 Score=25.82 Aligned_cols=66 Identities=14% Similarity=0.182 Sum_probs=44.2
Q ss_pred EEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhc-CCCEEE
Q 024063 50 AVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ-NTDFLV 127 (273)
Q Consensus 50 av~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~-~~Dlvv 127 (273)
+.+|-|+-.+.+..-++...| ++. +||.. .+..+.++|+++|+|+..-. ....|+...++ .+|++=
T Consensus 60 ~~vGAGTVl~~~~a~~a~~aG---A~F--ivsP~---~~~~v~~~~~~~~i~~iPG~----~TptEi~~A~~~Ga~~vK 126 (204)
T TIGR01182 60 ALIGAGTVLNPEQLRQAVDAG---AQF--IVSPG---LTPELAKHAQDHGIPIIPGV----ATPSEIMLALELGITALK 126 (204)
T ss_pred CEEEEEeCCCHHHHHHHHHcC---CCE--EECCC---CCHHHHHHHHHcCCcEECCC----CCHHHHHHHHHCCCCEEE
Confidence 446777666666655555445 443 57765 45689999999999997522 23456777776 888874
No 193
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=31.02 E-value=2.9e+02 Score=25.59 Aligned_cols=68 Identities=16% Similarity=0.202 Sum_probs=34.8
Q ss_pred EEEEECCchhHHHHHHhhhcCCCCceEEEEee-CCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCCCEEEE
Q 024063 50 AVLASKQEHCLVDFLYGWQEGKLPVEITCVIS-NHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVL 128 (273)
Q Consensus 50 av~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs-~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~Dlvv~ 128 (273)
.|+.-+..+.++.++...+. ...+ +++ .++...+....+...++|||+..+.. ..+...++++|.|++
T Consensus 89 vILT~s~S~~v~~~l~~~~~---~~~V--~v~ESrP~~eG~~~a~~L~~~GI~vtli~D------sa~~~~m~~vd~Vlv 157 (253)
T PRK06372 89 VIGTISSSQVLKAFISSSEK---IKSV--YILESRPMLEGIDMAKLLVKSGIDVVLLTD------ASMCEAVLNVDAVIV 157 (253)
T ss_pred EEEEeCCcHHHHHHHHhcCC---CCEE--EEecCCCchHHHHHHHHHHHCCCCEEEEeh------hHHHHHHHhCCEEEE
Confidence 34444456677777754221 1232 333 22221123344455668999988762 234444556777765
No 194
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=31.01 E-value=1.4e+02 Score=26.05 Aligned_cols=70 Identities=20% Similarity=0.242 Sum_probs=38.4
Q ss_pred CCCceEEEEEECC-chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhc-
Q 024063 44 DPKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ- 121 (273)
Q Consensus 44 ~~~~kiav~~Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~- 121 (273)
..++||+++|.|. |..+...+. ....+.++++++...+.. .... -.|+|+.. -+++.+.++
T Consensus 82 ~~~~rV~IIGaG~iG~~l~~~~~---~~~~g~~ivgv~D~d~~~----~~~~--i~g~~v~~--------~~~l~~li~~ 144 (213)
T PRK05472 82 DRTWNVALVGAGNLGRALLNYNG---FEKRGFKIVAAFDVDPEK----IGTK--IGGIPVYH--------IDELEEVVKE 144 (213)
T ss_pred CCCcEEEEECCCHHHHHHHHhhh---cccCCcEEEEEEECChhh----cCCE--eCCeEEcC--------HHHHHHHHHH
Confidence 3568999999876 334333221 123358999998764211 0011 13566531 124555554
Q ss_pred -CCCEEEEEe
Q 024063 122 -NTDFLVLAR 130 (273)
Q Consensus 122 -~~Dlvv~ag 130 (273)
++|.++++-
T Consensus 145 ~~iD~ViIa~ 154 (213)
T PRK05472 145 NDIEIGILTV 154 (213)
T ss_pred CCCCEEEEeC
Confidence 689888774
No 195
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=30.89 E-value=5.8e+02 Score=25.83 Aligned_cols=161 Identities=14% Similarity=0.124 Sum_probs=89.3
Q ss_pred ceEEEEEECC-chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCCCE
Q 024063 47 YKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDF 125 (273)
Q Consensus 47 ~kiav~~Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~Dl 125 (273)
++|+|+|-|. |..+...+.++ ..+|.+ .++.. . .+.+.+.|+... + ++.++++++|+
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~f-----G~~V~~--~d~~~---~--~~~~~~~g~~~~--~--------~l~ell~~aDv 196 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKAF-----GMKVLA--YDPYI---S--PERAEQLGVELV--D--------DLDELLARADF 196 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-----CCEEEE--ECCCC---C--hhHHHhcCCEEc--C--------CHHHHHhhCCE
Confidence 7899999887 55555555442 355543 23311 1 233455665321 1 24456668999
Q ss_pred EEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCCCCCCCCC----hHHHHHHHhC
Q 024063 126 LVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG----KPAKQAFDAG 201 (273)
Q Consensus 126 vv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~----~p~~~ai~~G 201 (273)
|+++- |+.+ .-++++..+.++..+.+.+=+--| ||. ..+..|+.+|
T Consensus 197 V~l~l-----Plt~--------------------~T~~li~~~~l~~mk~ga~lIN~a-----RG~~vde~aL~~aL~~g 246 (525)
T TIGR01327 197 ITVHT-----PLTP--------------------ETRGLIGAEELAKMKKGVIIVNCA-----RGGIIDEAALYEALEEG 246 (525)
T ss_pred EEEcc-----CCCh--------------------hhccCcCHHHHhcCCCCeEEEEcC-----CCceeCHHHHHHHHHcC
Confidence 98753 2111 123478888998887765444333 663 5677888888
Q ss_pred CC-EeEEEEEEecCccCCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Q 024063 202 VK-LIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRV 262 (273)
Q Consensus 202 ~~-~~GvT~H~~~~~~D~G~Ii~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~i~~l~~g~~ 262 (273)
.- ..|.-++.-.+-.| -+.+.-..+-+.|+-...+... .....+.+.+.+..+.+|+.
T Consensus 247 ~i~gAaLDVf~~EP~~~-~pL~~~~nvi~TPHia~~t~e~--~~~~~~~~~~ni~~~~~g~~ 305 (525)
T TIGR01327 247 HVRAAALDVFEKEPPTD-NPLFDLDNVIATPHLGASTREA--QENVATQVAEQVLDALKGLP 305 (525)
T ss_pred CeeEEEEecCCCCCCCC-ChhhcCCCeEECCCccccHHHH--HHHHHHHHHHHHHHHHcCCC
Confidence 63 34455555554333 3555556677777655433222 22233455566666666653
No 196
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=30.81 E-value=66 Score=24.29 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=19.4
Q ss_pred HHHHHHHcCCCEEEEcCCCCchHHHHHHHhc
Q 024063 91 VIRFLERHGIPYHYLCAKENEREEELLELVQ 121 (273)
Q Consensus 91 ~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~ 121 (273)
+..+|++++||++.++. .+++-+.+.
T Consensus 50 l~~~c~~~~Ip~~~~~s-----~~eLG~~~g 75 (95)
T PF01248_consen 50 LPALCEEKNIPYVFVPS-----KEELGRACG 75 (95)
T ss_dssp HHHHHHHTTEEEEEESH-----HHHHHHHTT
T ss_pred chhheeccceeEEEECC-----HHHHHHHHC
Confidence 66899999999998762 256666664
No 197
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=30.73 E-value=2.4e+02 Score=21.40 Aligned_cols=42 Identities=14% Similarity=0.320 Sum_probs=25.4
Q ss_pred HHHHHHHcCCCEEEEcCCCCchHHHHHHHhc--CCCEEEEEeec
Q 024063 91 VIRFLERHGIPYHYLCAKENEREEELLELVQ--NTDFLVLARYM 132 (273)
Q Consensus 91 ~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~--~~Dlvv~ag~~ 132 (273)
..+.+.+.|+++.........-.+++.+..+ ++|+||+..-+
T Consensus 61 ~~~~~~~~g~~~~~~~~~~~~~~~~I~~~a~~~~~dlIV~G~~~ 104 (132)
T cd01988 61 AERIAASLGVPVHTIIRIDHDIASGILRTAKERQADLIIMGWHG 104 (132)
T ss_pred HHHHhhhcCCceEEEEEecCCHHHHHHHHHHhcCCCEEEEecCC
Confidence 4556667899876543211122356777665 79999865543
No 198
>PLN02306 hydroxypyruvate reductase
Probab=30.61 E-value=5.2e+02 Score=25.22 Aligned_cols=116 Identities=9% Similarity=0.020 Sum_probs=68.3
Q ss_pred HHHHHhcCCCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCCCCCCCCC---
Q 024063 115 ELLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG--- 191 (273)
Q Consensus 115 ~~~~~l~~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~--- 191 (273)
++.++++++|+|++.- |+ +-.-++++..+.++..+.+.+=+--| ||.
T Consensus 229 ~L~ell~~sDiV~lh~-----Pl--------------------t~~T~~lin~~~l~~MK~ga~lIN~a-----RG~lVD 278 (386)
T PLN02306 229 SMEEVLREADVISLHP-----VL--------------------DKTTYHLINKERLALMKKEAVLVNAS-----RGPVID 278 (386)
T ss_pred CHHHHHhhCCEEEEeC-----CC--------------------ChhhhhhcCHHHHHhCCCCeEEEECC-----CccccC
Confidence 3556667899998752 21 12234599999999998875555555 884
Q ss_pred -hHHHHHHHhCCC-EeEEEEEEecCccCCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCce
Q 024063 192 -KPAKQAFDAGVK-LIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVL 263 (273)
Q Consensus 192 -~p~~~ai~~G~~-~~GvT~H~~~~~~D~G~Ii~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~i~~l~~g~~~ 263 (273)
..+..|+.+|.- ..|.-++.-.+-.| .++.....+-+.|+-...+-.. .+...+.+.+.+..+.+|+..
T Consensus 279 e~AL~~AL~sg~i~gAaLDVf~~EP~~~-~~L~~~pNVilTPHiag~T~e~--~~~~~~~~~~ni~~~~~g~~~ 349 (386)
T PLN02306 279 EVALVEHLKANPMFRVGLDVFEDEPYMK-PGLADMKNAVVVPHIASASKWT--REGMATLAALNVLGKLKGYPV 349 (386)
T ss_pred HHHHHHHHHhCCeeEEEEeCCCCCCCCc-chHhhCCCEEECCccccCcHHH--HHHHHHHHHHHHHHHHcCCCC
Confidence 467778888852 34455555444333 3555556677777654333221 122234445555666666533
No 199
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=30.44 E-value=1.2e+02 Score=28.69 Aligned_cols=22 Identities=18% Similarity=0.152 Sum_probs=16.0
Q ss_pred CCCceEEEEEECC-chhHHHHHH
Q 024063 44 DPKYKVAVLASKQ-EHCLVDFLY 65 (273)
Q Consensus 44 ~~~~kiav~~Sg~-g~~l~~ll~ 65 (273)
..++||+|+|+|. |+.+...+.
T Consensus 5 ~~~mkI~IiGaGa~G~alA~~La 27 (341)
T PRK12439 5 KREPKVVVLGGGSWGTTVASICA 27 (341)
T ss_pred cCCCeEEEECCCHHHHHHHHHHH
Confidence 3558999999997 566665554
No 200
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=30.37 E-value=1.8e+02 Score=23.21 Aligned_cols=58 Identities=19% Similarity=0.163 Sum_probs=33.0
Q ss_pred eEEEEEECCc--hhHHHHHHhhhcCCCCceEEEEeeCCCCCC---CcHHHHHHHHcCCCEEEEcC
Q 024063 48 KVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP---NSHVIRFLERHGIPYHYLCA 107 (273)
Q Consensus 48 kiav~~Sg~g--~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~---~~~~~~~a~~~gIp~~~~~~ 107 (273)
||+|..||+- +.+-.|+...... . .++.+|..+..... ...+.++|++.|+|+..+..
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~~-~-~~~~~v~~dtg~~~~~~~~~~~~~~~~~g~~~~~~~~ 63 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALPE-L-KPVPVIFLDTGYEFPETYEFVDRVAERYGLPLVVVRP 63 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhccc-c-cCceEEEeCCCCCCHHHHHHHHHHHHHhCCCeEEECC
Confidence 4677778753 3333444332111 0 25666666653211 13477888999999988763
No 201
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=30.35 E-value=2e+02 Score=25.68 Aligned_cols=66 Identities=12% Similarity=0.137 Sum_probs=44.6
Q ss_pred EEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhc-CCCEEE
Q 024063 50 AVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ-NTDFLV 127 (273)
Q Consensus 50 av~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~-~~Dlvv 127 (273)
+.+|.|+-.+.+.+-+++..| ++ .+||.. .+..+.++|+++|+|+..-. ..-.|+...++ .+|+|=
T Consensus 56 ~~vGAGTVl~~e~a~~ai~aG---A~--FivSP~---~~~~vi~~a~~~~i~~iPG~----~TptEi~~A~~~Ga~~vK 122 (201)
T PRK06015 56 AIVGAGTILNAKQFEDAAKAG---SR--FIVSPG---TTQELLAAANDSDVPLLPGA----ATPSEVMALREEGYTVLK 122 (201)
T ss_pred CEEeeEeCcCHHHHHHHHHcC---CC--EEECCC---CCHHHHHHHHHcCCCEeCCC----CCHHHHHHHHHCCCCEEE
Confidence 446777766666666665555 33 367765 45679999999999997422 23356777776 888874
No 202
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=30.28 E-value=2.7e+02 Score=24.46 Aligned_cols=55 Identities=13% Similarity=0.112 Sum_probs=32.5
Q ss_pred ceEEEEeeCCCCCCC-cHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCCCEEEEEee
Q 024063 74 VEITCVISNHDRGPN-SHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARY 131 (273)
Q Consensus 74 ~~i~~Vvs~~~~~~~-~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~Dlvv~ag~ 131 (273)
.++..++|+.-+.++ ....+.|++.|+|+..+....+ ..+.+.+..+|+.+....
T Consensus 110 gDvli~iS~SG~s~~v~~a~~~Ak~~G~~vI~IT~~~~---s~l~~l~~~~D~~i~ip~ 165 (196)
T PRK10886 110 GDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDG---GELAGLLGPQDVEIRIPS 165 (196)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCC---ChhhhccccCCEEEEcCC
Confidence 456666776532211 3467889999999988764322 234444334688775543
No 203
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=30.27 E-value=1.1e+02 Score=30.42 Aligned_cols=76 Identities=11% Similarity=0.189 Sum_probs=40.2
Q ss_pred ceEEEEEECCchhHHHHHHh-hhc-CCCC-ceEEEEeeCCCCCC--CcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhc
Q 024063 47 YKVAVLASKQEHCLVDFLYG-WQE-GKLP-VEITCVISNHDRGP--NSHVIRFLERHGIPYHYLCAKENEREEELLELVQ 121 (273)
Q Consensus 47 ~kiav~~Sg~g~~l~~ll~~-~~~-~~l~-~~i~~Vvs~~~~~~--~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~ 121 (273)
+||+|+|.|+.-.. .|++. ++. ..++ .+|+.+=.+..+.. ..-+.++++++|.++.+..+. +..+.|+
T Consensus 1 ~KI~iIGaGS~~tp-~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~g~~~~v~~Tt------dr~eAl~ 73 (437)
T cd05298 1 FKIVIAGGGSTYTP-GIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKENYPEIKFVYTT------DPEEAFT 73 (437)
T ss_pred CeEEEECCcHHHHH-HHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhhCCCeEEEEEC------CHHHHhC
Confidence 69999997764222 23322 233 2355 56654433321111 122456667788887654321 1345677
Q ss_pred CCCEEEEE
Q 024063 122 NTDFLVLA 129 (273)
Q Consensus 122 ~~Dlvv~a 129 (273)
++|+|+..
T Consensus 74 gADfVi~~ 81 (437)
T cd05298 74 DADFVFAQ 81 (437)
T ss_pred CCCEEEEE
Confidence 89998764
No 204
>PRK07283 hypothetical protein; Provisional
Probab=30.04 E-value=1.9e+02 Score=22.51 Aligned_cols=58 Identities=21% Similarity=0.215 Sum_probs=32.7
Q ss_pred EEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCC--CcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcC
Q 024063 52 LASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGP--NSHVIRFLERHGIPYHYLCAKENEREEELLELVQN 122 (273)
Q Consensus 52 ~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~--~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~ 122 (273)
+++|...++++ +++|+ +. .|+...|-.. ...+.+.|+.++||++.+.+ .+|+-..+-.
T Consensus 19 lv~G~~~v~~a----ik~gk--~~--lVi~A~Das~~~~kk~~~~~~~~~Vp~~~~~t-----~~eLG~a~Gk 78 (98)
T PRK07283 19 IISGEELVVKA----IQSGQ--AK--LVFLANDAGPNLTKKVTDKSNYYQVEVSTVFS-----TLELSAAVGK 78 (98)
T ss_pred eeEcHHHHHHH----HHcCC--cc--EEEEeCCCCHHHHHHHHHHHHHcCCCEEEeCC-----HHHHHHHhCC
Confidence 56665444444 44453 33 3444444322 23466889999999987642 2456666644
No 205
>cd07364 PCA_45_Dioxygenase_B Subunit B of the Class III extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of protocatechuate. Protocatechuate 4,5-dioxygenase (LigAB) catalyzes the oxidization and subsequent ring-opening of protocatechuate (or 3,4-dihydroxybenzoic acid, PCA), an intermediate in the breakdown of lignin and other compounds. Protocatechuate 4,5-dioxygenase is an aromatic ring opening dioxygenase belonging to the class III extradiol enzyme family, a group of enyzmes that cleaves aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon using a non-heme Fe(II). LigAB is composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. The B subunit (LigB) is the catalytic subunit of LigAB.
Probab=29.89 E-value=75 Score=29.54 Aligned_cols=36 Identities=19% Similarity=0.265 Sum_probs=26.5
Q ss_pred CCCCCCChHHHHHHHhCCCEeEEEEEEecC-ccCCCC
Q 024063 185 LPSFKGGKPAKQAFDAGVKLIGATSHFVTE-ELDAGP 220 (273)
Q Consensus 185 LP~yRG~~p~~~ai~~G~~~~GvT~H~~~~-~~D~G~ 220 (273)
.+.++|...+.+.|.+.....|+.+...++ ++|.|-
T Consensus 91 ~~~~~g~~~LA~~i~~~~~~~g~~~~~~~~~~lDHG~ 127 (277)
T cd07364 91 VPDVQGHPDLAWHIAQSLILDDFDMTIVNEMDVDHGL 127 (277)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCEEecCCCCCCcch
Confidence 446888888888887776677777766655 588884
No 206
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=29.88 E-value=1.2e+02 Score=25.42 Aligned_cols=59 Identities=17% Similarity=0.202 Sum_probs=33.2
Q ss_pred CCceEEEEEECCchhHHHH------HHhhhc-C--CCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCC
Q 024063 45 PKYKVAVLASKQEHCLVDF------LYGWQE-G--KLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAK 108 (273)
Q Consensus 45 ~~~kiav~~Sg~g~~l~~l------l~~~~~-~--~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~ 108 (273)
++.-++|.+|.+|+..+.+ .+.+++ + .....++ +||++ ++++.++|..++.++...+..
T Consensus 72 ~~~tlvi~iSkSG~T~Et~~~~~~a~~~l~~~~~~~~~~~~v-aiT~~----~s~l~~~a~~~~~~~~~~~~~ 139 (158)
T cd05015 72 PETTLFIVISKSGTTLETLANARLAREWLEEAGGDDLAKHFV-AITDN----GSGLLKKAGIEGLNTFEIPDW 139 (158)
T ss_pred cccEEEEEEECCcCCHHHHHHHHHHHHHHHHhccccccceEE-EEcCC----ChHHHHHcCCCcceeeeCCCC
Confidence 4456777889888643221 121211 1 1234444 66764 345666688899998877643
No 207
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=29.82 E-value=92 Score=24.00 Aligned_cols=31 Identities=26% Similarity=0.454 Sum_probs=17.5
Q ss_pred EEEEeeCCCCCCCcHHHHHHHHcCCCEEEEc
Q 024063 76 ITCVISNHDRGPNSHVIRFLERHGIPYHYLC 106 (273)
Q Consensus 76 i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~ 106 (273)
+.++|-.....+...+.+.|++.|||+...+
T Consensus 62 i~~iIltg~~~~~~~v~~la~~~~i~vi~t~ 92 (105)
T PF07085_consen 62 IACIILTGGLEPSEEVLELAKELGIPVISTP 92 (105)
T ss_dssp ECEEEEETT----HHHHHHHHHHT-EEEE-S
T ss_pred CCEEEEeCCCCCCHHHHHHHHHCCCEEEEEC
Confidence 4444333333456778999999999998765
No 208
>COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism]
Probab=29.49 E-value=2.9e+02 Score=27.24 Aligned_cols=55 Identities=11% Similarity=0.121 Sum_probs=35.1
Q ss_pred CceEEEEEECC--chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEc
Q 024063 46 KYKVAVLASKQ--EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 106 (273)
Q Consensus 46 ~~kiav~~Sg~--g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~ 106 (273)
++||+||||-+ |++--+++.. ..-.++|+++.+++ .-.-+.+.|++++-.+..+.
T Consensus 1 ~k~i~iLGSTGSIG~qtLdVi~~---~p~~f~vval~ag~---n~~~l~~q~~~f~P~~v~~~ 57 (385)
T COG0743 1 MKKLTILGSTGSIGTQTLDVIRR---NPDKFEVVALAAGK---NVELLAEQIREFKPKYVVIA 57 (385)
T ss_pred CceEEEEecCCchhHHHHHHHHh---CCCcEEEEEEecCC---cHHHHHHHHHHhCCceEEec
Confidence 47999999754 4443334443 22247899988876 22346777888887775443
No 209
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=29.46 E-value=3.1e+02 Score=25.02 Aligned_cols=78 Identities=18% Similarity=0.214 Sum_probs=40.4
Q ss_pred CceEEEEEECCc-hhH-HHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCC
Q 024063 46 KYKVAVLASKQE-HCL-VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 123 (273)
Q Consensus 46 ~~kiav~~Sg~g-~~l-~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~ 123 (273)
..+|.|+..|.+ .++ ..+++++.+-..+.++..|+ .+..+....+.+.++.++ .+.... ..+++.+++..+
T Consensus 170 ~~~iLi~~GG~d~~~~~~~~l~~l~~~~~~~~i~vv~-G~~~~~~~~l~~~~~~~~-~i~~~~-----~~~~m~~lm~~a 242 (279)
T TIGR03590 170 LRRVLVSFGGADPDNLTLKLLSALAESQINISITLVT-GSSNPNLDELKKFAKEYP-NIILFI-----DVENMAELMNEA 242 (279)
T ss_pred cCeEEEEeCCcCCcCHHHHHHHHHhccccCceEEEEE-CCCCcCHHHHHHHHHhCC-CEEEEe-----CHHHHHHHHHHC
Confidence 356666655543 343 34566554322235666544 332222233555555433 233222 124677888899
Q ss_pred CEEEEEe
Q 024063 124 DFLVLAR 130 (273)
Q Consensus 124 Dlvv~ag 130 (273)
|++|++|
T Consensus 243 Dl~Is~~ 249 (279)
T TIGR03590 243 DLAIGAA 249 (279)
T ss_pred CEEEECC
Confidence 9999876
No 210
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=29.37 E-value=2.1e+02 Score=27.24 Aligned_cols=121 Identities=12% Similarity=0.052 Sum_probs=66.5
Q ss_pred HHHHhcCCCEEEEEeecCCcchhhHhhhhhhhh----hhhcccCcccccccccCChhHHhhc--CCCeeEeecCCCCCCC
Q 024063 116 LLELVQNTDFLVLARYMQPVPLQKEAYLGYKLL----ESLSSKGSLTSYFNMILSGKFLRSY--GKDVINIHHGLLPSFK 189 (273)
Q Consensus 116 ~~~~l~~~Dlvv~ag~~~~~p~~~~~~~~~~~~----~~~~~~~~~~~y~~~il~~~~l~~~--~~~~iNiHpslLP~yR 189 (273)
+.+.+.++|+|+-+.--. .+ +-.+++ +...++..++.-=|.+.+.++-+.. +.+++..|+--.|.+-
T Consensus 77 l~~av~~aDlViEavpE~-----l~--vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~~~~~p~R~~g~HffnP~~~~ 149 (321)
T PRK07066 77 IEACVADADFIQESAPER-----EA--LKLELHERISRAAKPDAIIASSTSGLLPTDFYARATHPERCVVGHPFNPVYLL 149 (321)
T ss_pred HHHHhcCCCEEEECCcCC-----HH--HHHHHHHHHHHhCCCCeEEEECCCccCHHHHHHhcCCcccEEEEecCCccccC
Confidence 445566899999875333 11 122233 3345677777666667666666544 4679999998755542
Q ss_pred -------CCh----HHHHHHHhCCCEeEEEEEEecCccCCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 024063 190 -------GGK----PAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYC 258 (273)
Q Consensus 190 -------G~~----p~~~ai~~G~~~~GvT~H~~~~~~D~G~Ii~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~i~~l~ 258 (273)
|.. .+.++..-.. ..| +..+.+ ..|+..=+.+|+.. .++.+++..+.
T Consensus 150 pLVEVv~g~~T~~e~~~~~~~f~~-~lG-----------------k~pV~v-~kd~pGFi~NRl~~---a~~~EA~~lv~ 207 (321)
T PRK07066 150 PLVEVLGGERTAPEAVDAAMGIYR-ALG-----------------MRPLHV-RKEVPGFIADRLLE---ALWREALHLVN 207 (321)
T ss_pred ceEEEeCCCCCCHHHHHHHHHHHH-HcC-----------------CEeEec-CCCCccHHHHHHHH---HHHHHHHHHHH
Confidence 322 2222221111 122 122222 13566677777653 36677777777
Q ss_pred hCCceee
Q 024063 259 ELRVLPY 265 (273)
Q Consensus 259 ~g~~~~~ 265 (273)
+|-..+.
T Consensus 208 eGvas~e 214 (321)
T PRK07066 208 EGVATTG 214 (321)
T ss_pred hCCCCHH
Confidence 7766553
No 211
>PRK00536 speE spermidine synthase; Provisional
Probab=29.34 E-value=96 Score=28.75 Aligned_cols=43 Identities=7% Similarity=0.056 Sum_probs=31.5
Q ss_pred CCCceEEEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHc
Q 024063 44 DPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERH 98 (273)
Q Consensus 44 ~~~~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~ 98 (273)
..++||.|+|.|.|..++++++. + .+|+.| .-| ..+.+.|+++
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh---~---~~v~mV--eID----~~Vv~~~k~~ 113 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKY---D---THVDFV--QAD----EKILDSFISF 113 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCc---C---CeeEEE--ECC----HHHHHHHHHH
Confidence 35699999999999999999975 1 245433 332 3588888885
No 212
>COG3007 Uncharacterized paraquat-inducible protein B [Function unknown]
Probab=29.21 E-value=3.9e+02 Score=25.90 Aligned_cols=85 Identities=18% Similarity=0.263 Sum_probs=51.4
Q ss_pred cCCCCCCceEEEEEECCchhHHHHHH-hhhcCCCCceEEEEeeCCCCC---C-------CcHHHHHHHHcCCCEEEEcCC
Q 024063 40 VPDIDPKYKVAVLASKQEHCLVDFLY-GWQEGKLPVEITCVISNHDRG---P-------NSHVIRFLERHGIPYHYLCAK 108 (273)
Q Consensus 40 ~~~~~~~~kiav~~Sg~g~~l~~ll~-~~~~~~l~~~i~~Vvs~~~~~---~-------~~~~~~~a~~~gIp~~~~~~~ 108 (273)
.|....++||.|+++.+|-.|.+=+. ++ | ..++-.+|+-.++.. + +....++|++.|.=...+.-+
T Consensus 35 gp~~ngPKkVLviGaSsGyGLa~RIsaaF--G-~gAdTiGVffE~pgte~~~gtagwyn~~~f~~~A~~kGlyAksingD 111 (398)
T COG3007 35 GPIKNGPKKVLVIGASSGYGLAARISAAF--G-PGADTIGVFFERPGTERKPGTAGWYNNAAFKKFAKQKGLYAKSINGD 111 (398)
T ss_pred CCccCCCceEEEEecCCcccHHHHHHHHh--C-CCCceeeEEeecCCccCCCcchhhhHHHHHHHHHHhcCceeeecccc
Confidence 45555679999999888877766443 34 3 246667787655322 1 245789999999754443311
Q ss_pred -CC-chHHHHHHHhc----CCCEEE
Q 024063 109 -EN-EREEELLELVQ----NTDFLV 127 (273)
Q Consensus 109 -~~-~~~~~~~~~l~----~~Dlvv 127 (273)
.+ .--+.+++.++ ++|++|
T Consensus 112 aFS~e~k~kvIe~Ik~~~g~vDlvv 136 (398)
T COG3007 112 AFSDEMKQKVIEAIKQDFGKVDLVV 136 (398)
T ss_pred hhhHHHHHHHHHHHHHhhccccEEE
Confidence 11 11123455554 789987
No 213
>PRK13365 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=28.89 E-value=82 Score=29.32 Aligned_cols=37 Identities=14% Similarity=0.165 Sum_probs=23.9
Q ss_pred CCCCCCChHHHHHHHhCCCEeEEEEEEecC-ccCCCCe
Q 024063 185 LPSFKGGKPAKQAFDAGVKLIGATSHFVTE-ELDAGPI 221 (273)
Q Consensus 185 LP~yRG~~p~~~ai~~G~~~~GvT~H~~~~-~~D~G~I 221 (273)
.+.++|...+.+.|.+.....|+.+....+ ++|.|-.
T Consensus 91 ~~~~~g~~eLA~~i~~~~~~~g~~~~~~~~~~lDHG~~ 128 (279)
T PRK13365 91 LPPIRGDVQLQAHIAECLVNDEFDLTVFQDKPIDHGCA 128 (279)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCeeeccCCCCCchhh
Confidence 456778777888887666655665554443 5787753
No 214
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=28.57 E-value=3e+02 Score=27.66 Aligned_cols=81 Identities=9% Similarity=0.216 Sum_probs=43.1
Q ss_pred CceEEEEEE-CCc-h-hHHHHHHhhhcCCCCceEEEEeeCCCCC-CCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHh-
Q 024063 46 KYKVAVLAS-KQE-H-CLVDFLYGWQEGKLPVEITCVISNHDRG-PNSHVIRFLERHGIPYHYLCAKENEREEELLELV- 120 (273)
Q Consensus 46 ~~kiav~~S-g~g-~-~l~~ll~~~~~~~l~~~i~~Vvs~~~~~-~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l- 120 (273)
+.+|+++|- |.| | .+..|...+... ...+..+-++.-+. .-..+..+|+..|+|+..... ..++.+.+
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~--GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d-----~~~L~~aL~ 313 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGK--KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRD-----EAAMTRALT 313 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHc--CCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCC-----HHHHHHHHH
Confidence 467777773 445 3 333343333221 23444333333221 123467788899999986432 23344443
Q ss_pred --c---CCCEEEEEeecC
Q 024063 121 --Q---NTDFLVLARYMQ 133 (273)
Q Consensus 121 --~---~~Dlvv~ag~~~ 133 (273)
+ +.|+|++=.-++
T Consensus 314 ~lk~~~~~DvVLIDTaGR 331 (436)
T PRK11889 314 YFKEEARVDYILIDTAGK 331 (436)
T ss_pred HHHhccCCCEEEEeCccc
Confidence 2 479999877666
No 215
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=28.24 E-value=2.5e+02 Score=25.93 Aligned_cols=16 Identities=19% Similarity=0.364 Sum_probs=14.2
Q ss_pred HHHHHHHcCCCEEEEc
Q 024063 91 VIRFLERHGIPYHYLC 106 (273)
Q Consensus 91 ~~~~a~~~gIp~~~~~ 106 (273)
...+|+++|||+.+++
T Consensus 201 A~~l~~~~~i~i~Vfn 216 (238)
T COG0528 201 AFSLARDNGIPIIVFN 216 (238)
T ss_pred HHHHHHHcCCcEEEEe
Confidence 5788999999999987
No 216
>PRK08618 ornithine cyclodeaminase; Validated
Probab=28.19 E-value=1.2e+02 Score=28.51 Aligned_cols=71 Identities=11% Similarity=0.123 Sum_probs=38.2
Q ss_pred CceEEEEEECCch--hHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHH----HcCCCEEEEcCCCCchHHHHHHH
Q 024063 46 KYKVAVLASKQEH--CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLE----RHGIPYHYLCAKENEREEELLEL 119 (273)
Q Consensus 46 ~~kiav~~Sg~g~--~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~----~~gIp~~~~~~~~~~~~~~~~~~ 119 (273)
..+++|+|+|.-. .+.+++.. . +.+-+.|+ +++ .....++++ ++++++..+.. ..+.
T Consensus 127 ~~~v~iiGaG~~a~~~~~al~~~--~---~~~~v~v~-~r~---~~~a~~~~~~~~~~~~~~~~~~~~--------~~~~ 189 (325)
T PRK08618 127 AKTLCLIGTGGQAKGQLEAVLAV--R---DIERVRVY-SRT---FEKAYAFAQEIQSKFNTEIYVVNS--------ADEA 189 (325)
T ss_pred CcEEEEECCcHHHHHHHHHHHhc--C---CccEEEEE-CCC---HHHHHHHHHHHHHhcCCcEEEeCC--------HHHH
Confidence 4689999998632 34444332 1 23444455 442 122344443 45776654431 2234
Q ss_pred hcCCCEEEEEeecC
Q 024063 120 VQNTDFLVLARYMQ 133 (273)
Q Consensus 120 l~~~Dlvv~ag~~~ 133 (273)
+.++|+|+.+--..
T Consensus 190 ~~~aDiVi~aT~s~ 203 (325)
T PRK08618 190 IEEADIIVTVTNAK 203 (325)
T ss_pred HhcCCEEEEccCCC
Confidence 46899999887433
No 217
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=28.10 E-value=3.8e+02 Score=26.16 Aligned_cols=76 Identities=17% Similarity=0.112 Sum_probs=41.7
Q ss_pred EEEEEECCchh-HHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCC--CchHHHHHHHhc--CC
Q 024063 49 VAVLASKQEHC-LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE--NEREEELLELVQ--NT 123 (273)
Q Consensus 49 iav~~Sg~g~~-l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~--~~~~~~~~~~l~--~~ 123 (273)
--+++||+|++ +++.+-..-+ +.+.+.|++.-- ...-..+.++++|..+.++..+. ...-+++.+.+. .+
T Consensus 69 ~tf~isgsGh~g~E~al~N~le---Pgd~vLv~~~G~--wg~ra~D~~~r~ga~V~~v~~~~G~~~~le~i~~~lsqh~p 143 (385)
T KOG2862|consen 69 QTFVISGSGHSGWEAALVNLLE---PGDNVLVVSTGT--WGQRAADCARRYGAEVDVVEADIGQAVPLEEITEKLSQHKP 143 (385)
T ss_pred ceEEEecCCcchHHHHHHhhcC---CCCeEEEEEech--HHHHHHHHHHhhCceeeEEecCcccCccHHHHHHHHHhcCC
Confidence 45677777765 3443332222 233444444321 12235677889999998886442 233466666664 56
Q ss_pred CEEEEE
Q 024063 124 DFLVLA 129 (273)
Q Consensus 124 Dlvv~a 129 (273)
-+++++
T Consensus 144 ~~vfv~ 149 (385)
T KOG2862|consen 144 KAVFVT 149 (385)
T ss_pred ceEEEE
Confidence 666654
No 218
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=27.84 E-value=1.3e+02 Score=29.67 Aligned_cols=74 Identities=19% Similarity=0.309 Sum_probs=39.6
Q ss_pred ceEEEEEECCchh---HHHHHHhhhcC-CCC-ceEEEEeeCCCCCC--CcHHHHHHHHcCCCEEEEcCCCCchHHHHHHH
Q 024063 47 YKVAVLASKQEHC---LVDFLYGWQEG-KLP-VEITCVISNHDRGP--NSHVIRFLERHGIPYHYLCAKENEREEELLEL 119 (273)
Q Consensus 47 ~kiav~~Sg~g~~---l~~ll~~~~~~-~l~-~~i~~Vvs~~~~~~--~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~ 119 (273)
+||+|+|-|+.-. +++|+. .. .++ .+|+.+=.+..+.. ..-+.++++++|.++.+..+. +..+.
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~---~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~g~~~~v~~tt------D~~~A 71 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLK---TPEELPISEVTLYDIDEERLDIILTIAKRYVEEVGADIKFEKTM------DLEDA 71 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHc---ChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhhCCCeEEEEeC------CHHHH
Confidence 5899999776422 233433 33 354 56654432222111 122456667888876543321 13446
Q ss_pred hcCCCEEEEE
Q 024063 120 VQNTDFLVLA 129 (273)
Q Consensus 120 l~~~Dlvv~a 129 (273)
++++|+|+..
T Consensus 72 l~gADfVi~~ 81 (425)
T cd05197 72 IIDADFVINQ 81 (425)
T ss_pred hCCCCEEEEe
Confidence 6789998754
No 219
>PHA00771 head assembly protein
Probab=27.79 E-value=89 Score=26.37 Aligned_cols=48 Identities=15% Similarity=0.215 Sum_probs=36.8
Q ss_pred eeEeecCCCCCCCCChH----HHHHHHhCCCEeEEEEEEecCccCCCCeeEE
Q 024063 177 VINIHHGLLPSFKGGKP----AKQAFDAGVKLIGATSHFVTEELDAGPIIEQ 224 (273)
Q Consensus 177 ~iNiHpslLP~yRG~~p----~~~ai~~G~~~~GvT~H~~~~~~D~G~Ii~Q 224 (273)
.+-.|+=.+|.+||.+. .+|-.+---...-+++-++.+..--|.++.|
T Consensus 62 ~~ecHa~y~P~fRG~ya~~~r~F~kwlL~Nt~f~~vit~vp~kt~~G~vic~ 113 (151)
T PHA00771 62 TFDCHAMYLPEIRGFSKEIGLAFWRYILTNTTVQCVTSFAARKFRHGQMYCA 113 (151)
T ss_pred EEEEEeeeCccccchhHHHHHHHHHHHhcCCceeEEEEecccccccchhhhh
Confidence 78899999999999654 3454444445666777788888999998876
No 220
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=27.77 E-value=4.2e+02 Score=25.15 Aligned_cols=103 Identities=14% Similarity=0.144 Sum_probs=58.1
Q ss_pred EEEEEEcCCCCCChHhHHHHHHHHHHHhcccccccccCCCCCCceEEEEEECCchhHHHHHHhhhcCCCCceEEEEeeCC
Q 024063 4 MCIEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNH 83 (273)
Q Consensus 4 ~~~~~~~~~~~~~~~~l~~~f~~l~~~~~~~~~~~r~~~~~~~~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~ 83 (273)
|..-+++-|+..|+++++++-.-++. . . ..++. .-+++|++++.+|+.-. .|. +.+.
T Consensus 123 ~vA~~riiPl~v~~~~~~~a~~~~~~-~---g-i~~V~-v~r~~rv~II~TG~Ev~---------~G~--------i~D~ 179 (312)
T cd03522 123 MVATVKIIPLAVPEALVERAEALARD-G---P-LLRVA-PFRPLRVGLIVTGSEVY---------GGR--------IEDK 179 (312)
T ss_pred EEEEEEEeeeecCHHHHHHHHHHHHh-C---C-CcEEE-ecCCCEEEEEEcCCcCC---------CCc--------EEEh
Confidence 33445666788899999997666653 1 1 23342 22458999999986410 121 1121
Q ss_pred CCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHH----hcC-CCEEEEEeecC
Q 024063 84 DRGPNSHVIRFLERHGIPYHYLCAKENEREEELLEL----VQN-TDFLVLARYMQ 133 (273)
Q Consensus 84 ~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~----l~~-~Dlvv~ag~~~ 133 (273)
...-+.+++++.|..+.....- ..+.+++.+. +++ +|++++.|=+-
T Consensus 180 ---~~~~l~~~L~~~G~~v~~~~iv-~Dd~~~I~~ai~~~~~~g~DlIItTGGts 230 (312)
T cd03522 180 ---FGPVLRARLAALGVELVEQVIV-PHDEAAIAAAIAEALEAGAELLILTGGAS 230 (312)
T ss_pred ---HHHHHHHHHHHCCCEEEEEEEc-CCCHHHHHHHHHHHhcCCCCEEEEeCCcc
Confidence 1234677788899876543311 1112333333 333 89999988654
No 221
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=27.77 E-value=2.9e+02 Score=22.20 Aligned_cols=28 Identities=36% Similarity=0.574 Sum_probs=20.3
Q ss_pred cHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhc
Q 024063 89 SHVIRFLERHGIPYHYLCAKENEREEELLELVQ 121 (273)
Q Consensus 89 ~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~ 121 (273)
..+..+|++++||+.++..+ +++-..+.
T Consensus 59 ~~i~~lc~~~~Ip~~~~~sk-----~eLG~a~G 86 (117)
T TIGR03677 59 AHLPALCEEKGIPYVYVKKK-----EDLGAAAG 86 (117)
T ss_pred HHHHHHHHHcCCCEEEeCCH-----HHHHHHhC
Confidence 56788999999998876532 45666664
No 222
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=27.74 E-value=2.7e+02 Score=21.09 Aligned_cols=65 Identities=15% Similarity=0.192 Sum_probs=34.1
Q ss_pred ECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhc--CCCEEEEEe
Q 024063 54 SKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ--NTDFLVLAR 130 (273)
Q Consensus 54 Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~--~~Dlvv~ag 130 (273)
-|.|.--+.+++.++++. .+++.|=.++ ...+.+++.|+++...+ ..+++.++.+. +++.++++.
T Consensus 4 ~G~g~~~~~i~~~L~~~~--~~vvvid~d~------~~~~~~~~~~~~~i~gd----~~~~~~l~~a~i~~a~~vv~~~ 70 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGG--IDVVVIDRDP------ERVEELREEGVEVIYGD----ATDPEVLERAGIEKADAVVILT 70 (116)
T ss_dssp ES-SHHHHHHHHHHHHTT--SEEEEEESSH------HHHHHHHHTTSEEEES-----TTSHHHHHHTTGGCESEEEEES
T ss_pred EcCCHHHHHHHHHHHhCC--CEEEEEECCc------HHHHHHHhccccccccc----chhhhHHhhcCccccCEEEEcc
Confidence 333443344444444432 3554333332 34677788898877643 23345555554 788777653
No 223
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=27.70 E-value=3.3e+02 Score=23.23 Aligned_cols=61 Identities=10% Similarity=0.044 Sum_probs=36.2
Q ss_pred CceEEEEEECCc-hhHHHHHHhhhcCCCCceEEEEeeCCCCCC---CcHHHHHHHHcCCCEEEEc
Q 024063 46 KYKVAVLASKQE-HCLVDFLYGWQEGKLPVEITCVISNHDRGP---NSHVIRFLERHGIPYHYLC 106 (273)
Q Consensus 46 ~~kiav~~Sg~g-~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~---~~~~~~~a~~~gIp~~~~~ 106 (273)
..++.+++.|.| +.+..+++.+.......++..+.+.+.... ...+.++++++++.++.+.
T Consensus 95 ~~~~vlia~GtGiap~~~~l~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~~~~~~~ 159 (216)
T cd06198 95 RARQIWIAGGIGITPFLALLEALAARGDARPVTLFYCVRDPEDAVFLDELRALAAAAGVVLHVID 159 (216)
T ss_pred CceEEEEccccCHHHHHHHHHHHHhcCCCceEEEEEEECCHHHhhhHHHHHHHHHhcCeEEEEEe
Confidence 367888888877 456666665433322467888888774321 1335566666666555443
No 224
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=27.54 E-value=1.6e+02 Score=26.78 Aligned_cols=45 Identities=18% Similarity=0.220 Sum_probs=25.2
Q ss_pred cHHHHHHHHcCCCEEEEcCCCCchH-HHHHHHhcCCCEEEEEeecC
Q 024063 89 SHVIRFLERHGIPYHYLCAKENERE-EELLELVQNTDFLVLARYMQ 133 (273)
Q Consensus 89 ~~~~~~a~~~gIp~~~~~~~~~~~~-~~~~~~l~~~Dlvv~ag~~~ 133 (273)
......|.++|+|+..-..-.+..+ +++.+.-++.-+++...|..
T Consensus 74 ~~~~~~al~~G~~vvigttG~s~~~~~~l~~aa~~~~v~~s~n~s~ 119 (257)
T PRK00048 74 LENLEFALEHGKPLVIGTTGFTEEQLAELEEAAKKIPVVIAPNFSI 119 (257)
T ss_pred HHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHhcCCCEEEECcchH
Confidence 4567888899999986432211111 22333112567777777664
No 225
>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional
Probab=27.54 E-value=4.4e+02 Score=25.02 Aligned_cols=59 Identities=12% Similarity=0.169 Sum_probs=36.4
Q ss_pred CceEEEEEECCc-hhHHHHHHhhhcCCCCceEEEEeeCCCCCC---CcHHHHHHHHc-CCCEEE
Q 024063 46 KYKVAVLASKQE-HCLVDFLYGWQEGKLPVEITCVISNHDRGP---NSHVIRFLERH-GIPYHY 104 (273)
Q Consensus 46 ~~kiav~~Sg~g-~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~---~~~~~~~a~~~-gIp~~~ 104 (273)
..++.+++.|.| +.+..+++......-+.+|..+.+++.... ...+.++++++ ++-+..
T Consensus 261 ~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~v~l~~~~r~~~~~~~~~eL~~l~~~~~~~~~~~ 324 (399)
T PRK13289 261 DTPVVLISGGVGITPMLSMLETLAAQQPKRPVHFIHAARNGGVHAFRDEVEALAARHPNLKAHT 324 (399)
T ss_pred CCcEEEEecCccHHHHHHHHHHHHhcCCCCCEEEEEEeCChhhchHHHHHHHHHHhCCCcEEEE
Confidence 467888888887 577777776543333467888888774322 12345666665 555443
No 226
>PLN02256 arogenate dehydrogenase
Probab=27.09 E-value=2.6e+02 Score=26.20 Aligned_cols=64 Identities=13% Similarity=0.279 Sum_probs=35.3
Q ss_pred CCceEEEEEECC-chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhc-C
Q 024063 45 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ-N 122 (273)
Q Consensus 45 ~~~kiav~~Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~-~ 122 (273)
.++||+|+|.|. |..+...+.. .| .+|.+ +..+ . ..+.|+++|+..+ . ..++ .+. +
T Consensus 35 ~~~kI~IIG~G~mG~slA~~L~~--~G---~~V~~-~d~~-~-----~~~~a~~~gv~~~--~-----~~~e---~~~~~ 92 (304)
T PLN02256 35 RKLKIGIVGFGNFGQFLAKTFVK--QG---HTVLA-TSRS-D-----YSDIAAELGVSFF--R-----DPDD---FCEEH 92 (304)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHh--CC---CEEEE-EECc-c-----HHHHHHHcCCeee--C-----CHHH---HhhCC
Confidence 457999999886 4444333322 23 45553 3322 1 2466778887432 1 1122 233 6
Q ss_pred CCEEEEEe
Q 024063 123 TDFLVLAR 130 (273)
Q Consensus 123 ~Dlvv~ag 130 (273)
+|+|+++-
T Consensus 93 aDvVilav 100 (304)
T PLN02256 93 PDVVLLCT 100 (304)
T ss_pred CCEEEEec
Confidence 89999875
No 227
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=27.09 E-value=1.8e+02 Score=25.72 Aligned_cols=64 Identities=16% Similarity=0.229 Sum_probs=40.2
Q ss_pred EEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhc-CCCEEE
Q 024063 52 LASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ-NTDFLV 127 (273)
Q Consensus 52 ~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~-~~Dlvv 127 (273)
+|-|+-.+.+..-++++.| ++ .++|.. .+..+.++|+++|||+..-. ....|+.+.++ .+|++=
T Consensus 62 vGAGTV~~~e~a~~a~~aG---A~--FivSP~---~~~~v~~~~~~~~i~~iPG~----~TptEi~~A~~~G~~~vK 126 (196)
T PF01081_consen 62 VGAGTVLTAEQAEAAIAAG---AQ--FIVSPG---FDPEVIEYAREYGIPYIPGV----MTPTEIMQALEAGADIVK 126 (196)
T ss_dssp EEEES--SHHHHHHHHHHT----S--EEEESS-----HHHHHHHHHHTSEEEEEE----SSHHHHHHHHHTT-SEEE
T ss_pred eEEEeccCHHHHHHHHHcC---CC--EEECCC---CCHHHHHHHHHcCCcccCCc----CCHHHHHHHHHCCCCEEE
Confidence 5666666666665565555 33 467765 45679999999999998633 22346777776 888874
No 228
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=26.97 E-value=5e+02 Score=25.21 Aligned_cols=157 Identities=11% Similarity=0.116 Sum_probs=78.1
Q ss_pred hhHHHHHHhhhcCCCCceEEEEeeCCCCCC-CcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhc-----CCCEEEEEee
Q 024063 58 HCLVDFLYGWQEGKLPVEITCVISNHDRGP-NSHVIRFLERHGIPYHYLCAKENEREEELLELVQ-----NTDFLVLARY 131 (273)
Q Consensus 58 ~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~-~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~-----~~Dlvv~ag~ 131 (273)
|.+..|....+.. +..|..+-++.=+.. -..+..|+++.|+|+.... .......-..+.++ +.|+|++--=
T Consensus 154 TTIaKLA~~l~~~--g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~-~G~DpAaVafDAi~~Akar~~DvvliDTA 230 (340)
T COG0552 154 TTIAKLAKYLKQQ--GKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGK-EGADPAAVAFDAIQAAKARGIDVVLIDTA 230 (340)
T ss_pred hHHHHHHHHHHHC--CCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccC-CCCCcHHHHHHHHHHHHHcCCCEEEEeCc
Confidence 5666666554433 255654444431111 2347889999999998643 22222222333332 7999987655
Q ss_pred cCCcchhhHhhhhhhhhhhhcccCccccccc---ccCChhHHhhcCCCeeEeecCCCCCCCCChHHHHHH--HhCCCEeE
Q 024063 132 MQPVPLQKEAYLGYKLLESLSSKGSLTSYFN---MILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAF--DAGVKLIG 206 (273)
Q Consensus 132 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~---~il~~~~l~~~~~~~iNiHpslLP~yRG~~p~~~ai--~~G~~~~G 206 (273)
+|+ ..|..|---.. .++.+..... ++.++=. |-+--|-+.+.+|= .+-...+|
T Consensus 231 GRL-----------------hnk~nLM~EL~KI~rV~~k~~~~a-p~e~llv----lDAttGqnal~QAk~F~eav~l~G 288 (340)
T COG0552 231 GRL-----------------HNKKNLMDELKKIVRVIKKDDPDA-PHEILLV----LDATTGQNALSQAKIFNEAVGLDG 288 (340)
T ss_pred ccc-----------------cCchhHHHHHHHHHHHhccccCCC-CceEEEE----EEcccChhHHHHHHHHHHhcCCce
Confidence 551 01110000000 0111111111 1111111 23557989988873 45557899
Q ss_pred EEEEEecCccCCCCeeEE---EEEec---CCCCCHHHHH
Q 024063 207 ATSHFVTEELDAGPIIEQ---MVERV---SHRDNLRTFV 239 (273)
Q Consensus 207 vT~H~~~~~~D~G~Ii~Q---~~~~I---~~~dt~~~L~ 239 (273)
+-+-++|..--.|-|+.- -..|| .-+++.+||.
T Consensus 289 iIlTKlDgtAKGG~il~I~~~l~~PI~fiGvGE~~~DL~ 327 (340)
T COG0552 289 IILTKLDGTAKGGIILSIAYELGIPIKFIGVGEGYDDLR 327 (340)
T ss_pred EEEEecccCCCcceeeeHHHHhCCCEEEEeCCCChhhcc
Confidence 999999965555554432 23333 2456666654
No 229
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=26.91 E-value=2.8e+02 Score=26.99 Aligned_cols=63 Identities=11% Similarity=0.081 Sum_probs=34.9
Q ss_pred CchhHHHHHHhhhcCCCCceEEEEeeCCCCCC--CcHHHH-HHHHcCCCEEEEcCCCCchHHHHHHHhc--CCCEEEE
Q 024063 56 QEHCLVDFLYGWQEGKLPVEITCVISNHDRGP--NSHVIR-FLERHGIPYHYLCAKENEREEELLELVQ--NTDFLVL 128 (273)
Q Consensus 56 ~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~--~~~~~~-~a~~~gIp~~~~~~~~~~~~~~~~~~l~--~~Dlvv~ 128 (273)
.|+.+..|..+..+|+ .+..+++ ..+|. +..+.. ...+.|||+..+.+ ..+...++ ++|.|++
T Consensus 177 ~gTal~vi~~A~~~gk---~~~V~v~-EtRP~~qG~rlta~eL~~~GI~vtlI~D------sav~~~M~~~~Vd~Viv 244 (356)
T PRK08334 177 LGTVGAVLRVMHKDGT---LKLLWVD-ETRPVLQGARLSAWEYHYDGIPLKLISD------NMAGFVMQQGKVDAIIV 244 (356)
T ss_pred cchHHHHHHHHHHcCC---eEEEEEC-CCCchhhHHHHHHHHHHHCCCCEEEEeh------hHHHHHhhhcCCCEEEE
Confidence 3566766777776664 3333344 22322 223322 35789999998763 23444554 5777764
No 230
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=26.64 E-value=1.9e+02 Score=27.69 Aligned_cols=18 Identities=22% Similarity=0.361 Sum_probs=14.2
Q ss_pred eEEEEEECC-chhHHHHHH
Q 024063 48 KVAVLASKQ-EHCLVDFLY 65 (273)
Q Consensus 48 kiav~~Sg~-g~~l~~ll~ 65 (273)
||+|+|+|. |+.|..++.
T Consensus 1 kI~VIGaG~wGtALA~~la 19 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVA 19 (342)
T ss_pred CEEEECcCHHHHHHHHHHH
Confidence 699999997 677777664
No 231
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=26.61 E-value=76 Score=27.88 Aligned_cols=74 Identities=16% Similarity=0.211 Sum_probs=40.0
Q ss_pred eEEEEEECCc-hhHHHHHHhhhcCCCCc-eEEEEeeCCCCCC----CcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhc
Q 024063 48 KVAVLASKQE-HCLVDFLYGWQEGKLPV-EITCVISNHDRGP----NSHVIRFLERHGIPYHYLCAKENEREEELLELVQ 121 (273)
Q Consensus 48 kiav~~Sg~g-~~l~~ll~~~~~~~l~~-~i~~Vvs~~~~~~----~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~ 121 (273)
||+|+|-|+. +.+..+-+......++. +|+ .-+.|... ..-+.++++++|.++.+..+. +..+.++
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~--L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~tt------d~~eAl~ 72 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIV--LMDIDEERLEIVERLARRMVEEAGADLKVEATT------DRREALE 72 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEE--EE-SCHHHHHHHHHHHHHHHHHCTTSSEEEEES------SHHHHHT
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEE--EEcCCHHHHHHHHHHHHHHHHhcCCCeEEEEeC------CHHHHhC
Confidence 7888887764 33332223334455653 443 33433211 123456778899888654321 2345677
Q ss_pred CCCEEEEE
Q 024063 122 NTDFLVLA 129 (273)
Q Consensus 122 ~~Dlvv~a 129 (273)
++|+|+..
T Consensus 73 gADfVi~~ 80 (183)
T PF02056_consen 73 GADFVINQ 80 (183)
T ss_dssp TESEEEE-
T ss_pred CCCEEEEE
Confidence 99999864
No 232
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=26.57 E-value=1.4e+02 Score=28.51 Aligned_cols=54 Identities=20% Similarity=0.150 Sum_probs=34.3
Q ss_pred eEEEEEECCc--hhHHHHHHhhhcCCCCceEEEEeeCCCCC--------C---CcHHHHHHHHcCCCEEEEc
Q 024063 48 KVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRG--------P---NSHVIRFLERHGIPYHYLC 106 (273)
Q Consensus 48 kiav~~Sg~g--~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~--------~---~~~~~~~a~~~gIp~~~~~ 106 (273)
||++..||+- +.+..++.. . ..++.+|..+.-.. . ...+.++|+++|||.+.++
T Consensus 1 kVlValSGGvDSsvla~lL~~--~---g~~v~~v~i~~~~~~~~~~~~~s~~d~~~a~~va~~lgI~~~vvd 67 (349)
T cd01998 1 KVVVAMSGGVDSSVAAALLKE--Q---GYEVIGVFMKNWDEDDGKGGCCSEEDLKDARRVADQLGIPHYVVN 67 (349)
T ss_pred CEEEEecCCHHHHHHHHHHHH--c---CCcEEEEEEecccccccccCCCCHHHHHHHHHHHHHhCCcEEEEE
Confidence 6889999974 334444433 2 35777776543210 1 1347889999999999876
No 233
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=26.49 E-value=2.9e+02 Score=26.83 Aligned_cols=78 Identities=9% Similarity=-0.025 Sum_probs=44.5
Q ss_pred EEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCC---CcHHHHHHHHcCCCEEEEcCC-CCchHH---HHHHHhc--
Q 024063 51 VLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGP---NSHVIRFLERHGIPYHYLCAK-ENEREE---ELLELVQ-- 121 (273)
Q Consensus 51 v~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~---~~~~~~~a~~~gIp~~~~~~~-~~~~~~---~~~~~l~-- 121 (273)
+||.|.-..+-+.++.. | .+.+.|++.+.-.. -..+.+..++.||.+..++.- .+.+.+ +..+..+
T Consensus 31 ~fG~g~~~~l~~~~~~~--g---~~~~lvv~~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~~~~~r~~ 105 (395)
T PRK15454 31 LCGPGAVSSCGQQAQTR--G---LKHLFVMADSFLHQAGMTAGLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQLRES 105 (395)
T ss_pred EECcCHHHHHHHHHHhc--C---CCEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhc
Confidence 45655434444444432 2 34566777642111 134677778899998877522 233333 3444444
Q ss_pred CCCEEEEEeecC
Q 024063 122 NTDFLVLARYMQ 133 (273)
Q Consensus 122 ~~Dlvv~ag~~~ 133 (273)
++|.||-.|=+.
T Consensus 106 ~~D~IiavGGGS 117 (395)
T PRK15454 106 GCDGVIAFGGGS 117 (395)
T ss_pred CcCEEEEeCChH
Confidence 899999999776
No 234
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=26.44 E-value=2.1e+02 Score=26.00 Aligned_cols=67 Identities=16% Similarity=0.275 Sum_probs=35.4
Q ss_pred ceEEEEEECC-chhH-HHHHHhhhcCCC-CceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCC
Q 024063 47 YKVAVLASKQ-EHCL-VDFLYGWQEGKL-PVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 123 (273)
Q Consensus 47 ~kiav~~Sg~-g~~l-~~ll~~~~~~~l-~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~ 123 (273)
+||+|+|.|. |+.+ ..|+++ |.. +.+| +++++.. ......++.+.|+.+. .. ..+.++++
T Consensus 4 mkI~~IG~G~mG~aia~~l~~~---g~~~~~~v--~v~~r~~--~~~~~~l~~~~g~~~~--~~--------~~e~~~~a 66 (279)
T PRK07679 4 QNISFLGAGSIAEAIIGGLLHA---NVVKGEQI--TVSNRSN--ETRLQELHQKYGVKGT--HN--------KKELLTDA 66 (279)
T ss_pred CEEEEECccHHHHHHHHHHHHC---CCCCcceE--EEECCCC--HHHHHHHHHhcCceEe--CC--------HHHHHhcC
Confidence 6999999886 4443 334432 311 2344 4456521 1234555666676322 11 11234578
Q ss_pred CEEEEEe
Q 024063 124 DFLVLAR 130 (273)
Q Consensus 124 Dlvv~ag 130 (273)
|+||++-
T Consensus 67 DvVilav 73 (279)
T PRK07679 67 NILFLAM 73 (279)
T ss_pred CEEEEEe
Confidence 9999875
No 235
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=26.38 E-value=4e+02 Score=23.05 Aligned_cols=60 Identities=8% Similarity=0.070 Sum_probs=35.3
Q ss_pred CceEEEEeeCCCCC--CCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCCCEEEEEeec
Q 024063 73 PVEITCVISNHDRG--PNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARYM 132 (273)
Q Consensus 73 ~~~i~~Vvs~~~~~--~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~Dlvv~ag~~ 132 (273)
..+|+.|-|..... ......+..++.|.....+.......++++.+.+.++|.|++.|=.
T Consensus 29 ~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~ad~I~~~GG~ 90 (210)
T cd03129 29 GARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLLEADGIFVGGGN 90 (210)
T ss_pred CCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhhCCEEEEcCCc
Confidence 45665554443221 1123455667778877655422112346778888899999999833
No 236
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=26.24 E-value=4.2e+02 Score=25.91 Aligned_cols=82 Identities=11% Similarity=0.110 Sum_probs=42.4
Q ss_pred ceEEEEE-ECCc--hhHHHHHHhh--hcCCCCceEEEEeeCC-CCCC-CcHHHHHHHHcCCCEEEEcCCCCchHHHHHHH
Q 024063 47 YKVAVLA-SKQE--HCLVDFLYGW--QEGKLPVEITCVISNH-DRGP-NSHVIRFLERHGIPYHYLCAKENEREEELLEL 119 (273)
Q Consensus 47 ~kiav~~-Sg~g--~~l~~ll~~~--~~~~l~~~i~~Vvs~~-~~~~-~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~ 119 (273)
.-++++| +|.| +.+..|.... +.|. .. +++++.. -+.. ...+..||+.+|+|+..+..... -...+..
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~--~~-V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~--l~~~l~~ 212 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARCVMRFGA--SK-VALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGD--LQLALAE 212 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCC--Ce-EEEEecccccccHHHHHHHHHHHcCCceEecCCccc--HHHHHHH
Confidence 4555555 4445 3444454432 2231 23 4455532 2211 13477889999999987653211 1222333
Q ss_pred hcCCCEEEEEeecC
Q 024063 120 VQNTDFLVLARYMQ 133 (273)
Q Consensus 120 l~~~Dlvv~ag~~~ 133 (273)
+.+.|+|++=-.++
T Consensus 213 l~~~DlVLIDTaG~ 226 (374)
T PRK14722 213 LRNKHMVLIDTIGM 226 (374)
T ss_pred hcCCCEEEEcCCCC
Confidence 44789998755554
No 237
>PRK06141 ornithine cyclodeaminase; Validated
Probab=25.94 E-value=1.3e+02 Score=28.12 Aligned_cols=72 Identities=10% Similarity=0.097 Sum_probs=38.5
Q ss_pred CCceEEEEEECCch--hHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHH---cCCCEEEEcCCCCchHHHHHHH
Q 024063 45 PKYKVAVLASKQEH--CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLER---HGIPYHYLCAKENEREEELLEL 119 (273)
Q Consensus 45 ~~~kiav~~Sg~g~--~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~---~gIp~~~~~~~~~~~~~~~~~~ 119 (273)
...||+|+|+|.-. .+.+++.. .+ ..+| .|.++. .....++|++ .|+++..+. +..+.
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~--~~--~~~V--~V~~Rs---~~~a~~~a~~~~~~g~~~~~~~--------~~~~a 186 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASV--RP--IKQV--RVWGRD---PAKAEALAAELRAQGFDAEVVT--------DLEAA 186 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhc--CC--CCEE--EEEcCC---HHHHHHHHHHHHhcCCceEEeC--------CHHHH
Confidence 34789999998632 33444432 12 1333 344553 2334555554 366555432 12334
Q ss_pred hcCCCEEEEEeecC
Q 024063 120 VQNTDFLVLARYMQ 133 (273)
Q Consensus 120 l~~~Dlvv~ag~~~ 133 (273)
++++|+|+.+.-..
T Consensus 187 v~~aDIVi~aT~s~ 200 (314)
T PRK06141 187 VRQADIISCATLST 200 (314)
T ss_pred HhcCCEEEEeeCCC
Confidence 56899998876443
No 238
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=25.85 E-value=2.4e+02 Score=26.82 Aligned_cols=57 Identities=11% Similarity=0.035 Sum_probs=33.4
Q ss_pred EEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCC-CCchH---HHHHHHhc--CCCEEEEEeecC
Q 024063 77 TCVISNHDRGPNSHVIRFLERHGIPYHYLCAK-ENERE---EELLELVQ--NTDFLVLARYMQ 133 (273)
Q Consensus 77 ~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~-~~~~~---~~~~~~l~--~~Dlvv~ag~~~ 133 (273)
+.|||.+.-.....+.+..++.|+.+..++.- .+... ++..+.++ ++|.||-.|=+.
T Consensus 26 ~livtd~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 88 (367)
T cd08182 26 VLLVTGPRSAIASGLTDILKPLGTLVVVFDDVQPNPDLEDLAAGIRLLREFGPDAVLAVGGGS 88 (367)
T ss_pred EEEEeCchHHHHHHHHHHHHHcCCeEEEEcCcCCCcCHHHHHHHHHHHHhcCcCEEEEeCCcH
Confidence 45777652211234666677888888776522 22222 24444454 799999888765
No 239
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=25.78 E-value=1.7e+02 Score=26.85 Aligned_cols=66 Identities=14% Similarity=0.256 Sum_probs=34.1
Q ss_pred ceEEEEEECC-chhH-HHHHHhhhcCCCC-ceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCC
Q 024063 47 YKVAVLASKQ-EHCL-VDFLYGWQEGKLP-VEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 123 (273)
Q Consensus 47 ~kiav~~Sg~-g~~l-~~ll~~~~~~~l~-~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~ 123 (273)
+||+|+|.|. |..+ ..|++ .|..+ .+| .+++++ ......+++++|+-+ ... .+ +.++++
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~---~g~~~~~~I--~v~~r~---~~~~~~l~~~~g~~~--~~~-----~~---e~~~~a 64 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMIN---KNIVSPDQI--ICSDLN---VSNLKNASDKYGITI--TTN-----NN---EVANSA 64 (272)
T ss_pred CeEEEECccHHHHHHHHHHHH---CCCCCCceE--EEECCC---HHHHHHHHHhcCcEE--eCC-----cH---HHHhhC
Confidence 5899999886 4433 33443 23222 344 344542 223444455678632 221 11 234578
Q ss_pred CEEEEEe
Q 024063 124 DFLVLAR 130 (273)
Q Consensus 124 Dlvv~ag 130 (273)
|+||++=
T Consensus 65 DiIiLav 71 (272)
T PRK12491 65 DILILSI 71 (272)
T ss_pred CEEEEEe
Confidence 9998875
No 240
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=25.71 E-value=2.1e+02 Score=27.24 Aligned_cols=49 Identities=18% Similarity=0.162 Sum_probs=28.9
Q ss_pred CceEEEEEECC-chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCE
Q 024063 46 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPY 102 (273)
Q Consensus 46 ~~kiav~~Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~ 102 (273)
|+||||.|.|. |..+...+. + ..+.++++|.... ......+|+++|.++
T Consensus 1 ~ikVaI~G~GrIGr~va~al~---~-~~d~eLvav~d~~----~~~~~~la~~~G~~~ 50 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVA---A-QPDMELVGVAKTK----PDYEARVAVEKGYPL 50 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHh---c-CCCcEEEEEECCC----hHHHHHHHHhcCCCc
Confidence 47999999865 443333322 2 2258998887532 233455566677664
No 241
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=25.64 E-value=3.2e+02 Score=21.62 Aligned_cols=59 Identities=20% Similarity=0.286 Sum_probs=34.1
Q ss_pred EEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCCC--cHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCC
Q 024063 52 LASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPN--SHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 123 (273)
Q Consensus 52 ~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~--~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~ 123 (273)
++||...++++ +++|+ +.+||...|-+.+ ..+..+|+.++||++.+-. .+|+-..+-..
T Consensus 18 lv~G~~~v~~a----ik~gk----~~lVI~A~D~s~~~kkki~~~~~~~~vp~~~~~t-----~~eLg~a~Gk~ 78 (104)
T PRK05583 18 LLEGYNKCEEA----IKKKK----VYLIIISNDISENSKNKFKNYCNKYNIPYIEGYS-----KEELGNAIGRD 78 (104)
T ss_pred eeecHHHHHHH----HHcCC----ceEEEEeCCCCHhHHHHHHHHHHHcCCCEEEecC-----HHHHHHHhCCC
Confidence 66665444444 44453 3445544443332 4578889999999986542 25566666433
No 242
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=25.55 E-value=2.6e+02 Score=24.63 Aligned_cols=64 Identities=23% Similarity=0.342 Sum_probs=39.1
Q ss_pred hHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhc----CCCEEEEEe
Q 024063 59 CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ----NTDFLVLAR 130 (273)
Q Consensus 59 ~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~----~~Dlvv~ag 130 (273)
.+++.++.+++.. . .+.|+||. +.+-+..+++..|||+..-..|- ....+.+.++ .++=+++.|
T Consensus 50 e~~~W~~e~k~~g--i-~v~vvSNn---~e~RV~~~~~~l~v~fi~~A~KP--~~~~fr~Al~~m~l~~~~vvmVG 117 (175)
T COG2179 50 ELRAWLAELKEAG--I-KVVVVSNN---KESRVARAAEKLGVPFIYRAKKP--FGRAFRRALKEMNLPPEEVVMVG 117 (175)
T ss_pred HHHHHHHHHHhcC--C-EEEEEeCC---CHHHHHhhhhhcCCceeecccCc--cHHHHHHHHHHcCCChhHEEEEc
Confidence 5677666555432 2 34577775 45678899999999998754332 2234444443 455566666
No 243
>PRK08291 ectoine utilization protein EutC; Validated
Probab=25.34 E-value=3.7e+02 Score=25.22 Aligned_cols=71 Identities=18% Similarity=0.238 Sum_probs=38.5
Q ss_pred CceEEEEEECCch--hHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHH----cCCCEEEEcCCCCchHHHHHHH
Q 024063 46 KYKVAVLASKQEH--CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLER----HGIPYHYLCAKENEREEELLEL 119 (273)
Q Consensus 46 ~~kiav~~Sg~g~--~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~----~gIp~~~~~~~~~~~~~~~~~~ 119 (273)
.++++|+|+|.-. .+.++... . +.+-+.|+ +++ .....+++++ .|+++..++ ++.+.
T Consensus 132 ~~~v~IiGaG~~a~~~~~al~~~---~--~~~~V~v~-~R~---~~~a~~l~~~~~~~~g~~v~~~~--------d~~~a 194 (330)
T PRK08291 132 ASRAAVIGAGEQARLQLEALTLV---R--PIREVRVW-ARD---AAKAEAYAADLRAELGIPVTVAR--------DVHEA 194 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhc---C--CCCEEEEE-cCC---HHHHHHHHHHHhhccCceEEEeC--------CHHHH
Confidence 4799999998642 33444322 1 23333344 453 2234555553 467655432 12344
Q ss_pred hcCCCEEEEEeecC
Q 024063 120 VQNTDFLVLARYMQ 133 (273)
Q Consensus 120 l~~~Dlvv~ag~~~ 133 (273)
+.++|+|+.+--.+
T Consensus 195 l~~aDiVi~aT~s~ 208 (330)
T PRK08291 195 VAGADIIVTTTPSE 208 (330)
T ss_pred HccCCEEEEeeCCC
Confidence 56899999887443
No 244
>cd06392 PBP1_iGluR_delta_1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 may be closer related to non-NMDA receptors. In contrast to GluRdelta2, GluRdel
Probab=25.33 E-value=2.4e+02 Score=27.57 Aligned_cols=80 Identities=11% Similarity=0.077 Sum_probs=50.1
Q ss_pred HhHHHHHHHHHHHhcccccccccCCCCCCceEEEEE-EC-CchhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHH
Q 024063 18 EQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLA-SK-QEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFL 95 (273)
Q Consensus 18 ~~l~~~f~~l~~~~~~~~~~~r~~~~~~~~kiav~~-Sg-~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a 95 (273)
++.+.+|.-...++|... ...+..|+.+.+ .. .+..+++..++|+- +...|+||+.........-+..+|
T Consensus 11 ~~~~~af~~Av~~~N~~~------~~l~~~~L~~~~~~~~~~d~F~~~~~ac~l--~~~gV~AI~Gp~s~~~a~~v~sic 82 (400)
T cd06392 11 AKDDRVFQLAVSDLSLND------DILQSEKITYSIKSIEANNPFQAVQEACDL--MTQGILALVTSTGCASANALQSLT 82 (400)
T ss_pred hHHHHHHHHHHHHhccCc------cccCCceEEEEEEecCCCChhHHHHHHHHH--HhcCeEEEECCCchhHHHHHHHHh
Confidence 455778887777786533 233456776666 22 23444444444321 234588899876544456688999
Q ss_pred HHcCCCEEEE
Q 024063 96 ERHGIPYHYL 105 (273)
Q Consensus 96 ~~~gIp~~~~ 105 (273)
.+..||....
T Consensus 83 ~~l~VP~is~ 92 (400)
T cd06392 83 DAMHIPHLFV 92 (400)
T ss_pred ccCcCCcEee
Confidence 9999998875
No 245
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.17 E-value=1.5e+02 Score=21.30 Aligned_cols=30 Identities=10% Similarity=0.037 Sum_probs=23.1
Q ss_pred CeeEEEEEEcCCCCCChHhHHHHHHHHHHHh
Q 024063 1 MIKMCIEFIFDPIKWPREQMDEDFFKLSKMF 31 (273)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~l~~~f~~l~~~~ 31 (273)
+|.|.++++.+.. .+.++|+++|..++.+.
T Consensus 38 ~f~~~~~v~~p~~-~~~~~l~~~l~~l~~~l 67 (75)
T cd04870 38 RLSLGILVQIPDS-ADSEALLKDLLFKAHEL 67 (75)
T ss_pred eeEEEEEEEcCCC-CCHHHHHHHHHHHHHHc
Confidence 3567777777543 56899999999999865
No 246
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=25.07 E-value=1.2e+02 Score=24.35 Aligned_cols=35 Identities=14% Similarity=0.146 Sum_probs=23.3
Q ss_pred ceEEEEEECCchhHH--HHHHhhhcCCCCceEEEEeeCC
Q 024063 47 YKVAVLASKQEHCLV--DFLYGWQEGKLPVEITCVISNH 83 (273)
Q Consensus 47 ~kiav~~Sg~g~~l~--~ll~~~~~~~l~~~i~~Vvs~~ 83 (273)
+||++.+||.....+ .+++.+++. +++|..|+|..
T Consensus 1 k~i~l~vtGs~~~~~~~~~l~~L~~~--g~~v~vv~S~~ 37 (129)
T PF02441_consen 1 KRILLGVTGSIAAYKAPDLLRRLKRA--GWEVRVVLSPS 37 (129)
T ss_dssp -EEEEEE-SSGGGGGHHHHHHHHHTT--TSEEEEEESHH
T ss_pred CEEEEEEECHHHHHHHHHHHHHHhhC--CCEEEEEECCc
Confidence 689999999876543 456665543 47888888864
No 247
>PTZ00222 60S ribosomal protein L7a; Provisional
Probab=25.03 E-value=2.8e+02 Score=25.96 Aligned_cols=73 Identities=10% Similarity=0.145 Sum_probs=41.3
Q ss_pred ceEEEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCCC---cHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhc--
Q 024063 47 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPN---SHVIRFLERHGIPYHYLCAKENEREEELLELVQ-- 121 (273)
Q Consensus 47 ~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~---~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~-- 121 (273)
.|=.++.||..++..+ ++.+. +.++ |++ +|-.+. ..+-.+|+++|||++.+..+ ++|-.++.
T Consensus 128 kkp~~LvsG~n~Vtka----IekkK--AkLV-IIA-~DVsPie~vk~LpaLCrk~~VPY~iVktK-----aeLG~AIGkK 194 (263)
T PTZ00222 128 KAPLAVVTGLQEVTRA----IEKKQ--ARMV-VIA-NNVDPVELVLWMPNLCRANKIPYAIVKDM-----ARLGDAIGRK 194 (263)
T ss_pred CCCCeeccCHHHHHHH----HHcCC--ceEE-EEe-CCCCHHHHHHHHHHHHHhcCCCEEEECCH-----HHHHHHHCCC
Confidence 3445667765554443 33343 4443 333 332222 23678999999999988642 45666665
Q ss_pred CCCEEEEEeec
Q 024063 122 NTDFLVLARYM 132 (273)
Q Consensus 122 ~~Dlvv~ag~~ 132 (273)
.+-.|.+...+
T Consensus 195 travVAItD~g 205 (263)
T PTZ00222 195 TATCVAITDVN 205 (263)
T ss_pred CCeEEEEeeCC
Confidence 35555555544
No 248
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=24.96 E-value=4.4e+02 Score=22.53 Aligned_cols=59 Identities=12% Similarity=0.057 Sum_probs=33.8
Q ss_pred CceEEEEEECCc-hhHHHHHHhhhcCCCCceEEEEeeCCCCCC---CcHHHHHHHHc-CCCEEE
Q 024063 46 KYKVAVLASKQE-HCLVDFLYGWQEGKLPVEITCVISNHDRGP---NSHVIRFLERH-GIPYHY 104 (273)
Q Consensus 46 ~~kiav~~Sg~g-~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~---~~~~~~~a~~~-gIp~~~ 104 (273)
..++.+++.|.| +.+..+++......-+.+|..+.++++... ...+.++++++ ++.++.
T Consensus 97 ~~~~v~iagG~Giap~~~~l~~~~~~~~~~~v~l~~~~r~~~~~~~~~el~~l~~~~~~~~~~~ 160 (222)
T cd06194 97 EGPLLLVGAGTGLAPLWGIARAALRQGHQGEIRLVHGARDPDDLYLHPALLWLAREHPNFRYIP 160 (222)
T ss_pred CCCEEEEecCcchhhHHHHHHHHHhcCCCccEEEEEecCChhhccCHHHHHHHHHHCCCeEEEE
Confidence 357877777777 566777765432222466777777764321 13345566544 565544
No 249
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=24.90 E-value=2.7e+02 Score=26.50 Aligned_cols=56 Identities=18% Similarity=0.232 Sum_probs=39.2
Q ss_pred ceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhc-CCCEEEEEeecC
Q 024063 74 VEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ-NTDFLVLARYMQ 133 (273)
Q Consensus 74 ~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~-~~Dlvv~ag~~~ 133 (273)
.+++.||..+.......+.+.|+++|.|.+.++...... .+++. .-.+.|.||-.-
T Consensus 213 ~Dl~iVVG~~nSSNs~rL~eiA~~~g~~aylId~~~ei~----~~w~~~~~~VGvTAGASt 269 (294)
T COG0761 213 VDLVIVVGSKNSSNSNRLAEIAKRHGKPAYLIDDAEEID----PEWLKGVKTVGVTAGAST 269 (294)
T ss_pred CCEEEEECCCCCccHHHHHHHHHHhCCCeEEeCChHhCC----HHHhcCccEEEEecCCCC
Confidence 788888887754334569999999999999887432221 23455 467888888765
No 250
>COG2121 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.88 E-value=2e+02 Score=26.04 Aligned_cols=45 Identities=22% Similarity=0.486 Sum_probs=27.8
Q ss_pred hhHHHHHHhhhcCCCCceEEEEeeCCCCCC----CcHHHHHHHHcCCCEEEEc
Q 024063 58 HCLVDFLYGWQEGKLPVEITCVISNHDRGP----NSHVIRFLERHGIPYHYLC 106 (273)
Q Consensus 58 ~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~----~~~~~~~a~~~gIp~~~~~ 106 (273)
+.|.+++++.++|. +|+ +..+-++++ +..+..+|+..|.|+..+.
T Consensus 105 ~Alr~l~k~Lk~G~---~i~-itpDgPkGp~~~~~~Gii~LA~~sg~pi~pv~ 153 (214)
T COG2121 105 SALRALLKALKQGK---SIA-ITPDGPKGPVHKIGDGIIALAQKSGVPIIPVG 153 (214)
T ss_pred HHHHHHHHHHhCCC---cEE-EcCCCCCCCceeccchhhHhhHhcCCCeEEEE
Confidence 45777777777763 331 222222222 4668888999998887665
No 251
>PRK13978 ribose-5-phosphate isomerase A; Provisional
Probab=24.79 E-value=1.7e+02 Score=26.65 Aligned_cols=47 Identities=17% Similarity=0.115 Sum_probs=28.8
Q ss_pred EEECCchhHHHHH----HhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEc
Q 024063 52 LASKQEHCLVDFL----YGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 106 (273)
Q Consensus 52 ~~Sg~g~~l~~ll----~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~ 106 (273)
+|=|+||....++ +..+++.+ +|.+|-|+. .-...|+++|||+...+
T Consensus 25 vGLGTGSTv~~~i~~L~~~~~~~~l--~i~~VptS~------~t~~~a~~~Gipl~~l~ 75 (228)
T PRK13978 25 LGIGTGSTMELLLPQMAQLIKERGY--NITGVCTSN------KIAFLAKELGIKICEIN 75 (228)
T ss_pred EEeCchHHHHHHHHHHHHHhhccCc--cEEEEeCcH------HHHHHHHHcCCcEechh
Confidence 5555665544333 44444444 477775554 24688999999988655
No 252
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=24.77 E-value=1.4e+02 Score=22.96 Aligned_cols=36 Identities=25% Similarity=0.380 Sum_probs=22.2
Q ss_pred HHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCCCEEEEEe
Q 024063 91 VIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLAR 130 (273)
Q Consensus 91 ~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~Dlvv~ag 130 (273)
+.+.++++|+|+..... +..++.+...+.|+++++-
T Consensus 19 i~~~~~~~~~~~~v~~~----~~~~~~~~~~~~Diil~~P 54 (96)
T cd05564 19 MKKAAEKRGIDAEIEAV----PESELEEYIDDADVVLLGP 54 (96)
T ss_pred HHHHHHHCCCceEEEEe----cHHHHHHhcCCCCEEEECh
Confidence 46788899998765332 1223333445789887763
No 253
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=24.69 E-value=6.5e+02 Score=24.42 Aligned_cols=81 Identities=19% Similarity=0.195 Sum_probs=42.2
Q ss_pred CCceEEEEEECCc-hhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcH-HHHHHHHcCCCEEEEcCCCCchHHHHHHHhc-
Q 024063 45 PKYKVAVLASKQE-HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSH-VIRFLERHGIPYHYLCAKENEREEELLELVQ- 121 (273)
Q Consensus 45 ~~~kiav~~Sg~g-~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~-~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~- 121 (273)
..+|++|.+...- ..+..+|.. +..+++.|++..+.+.... .....+..+++...+.. .+..++.+.++
T Consensus 298 ~gk~v~i~~~~~~~~~l~~~L~e-----~G~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~d~~el~~~i~~ 369 (428)
T cd01965 298 GGKRVAIAGDPDLLLGLSRFLLE-----MGAEPVAAVTGTDNPPFEKRMELLASLEGIPAEVVFV---GDLWDLESLAKE 369 (428)
T ss_pred cCCEEEEEcChHHHHHHHHHHHH-----cCCcceEEEEcCCCchhHHHHHHhhhhcCCCceEEEC---CCHHHHHHHhhc
Confidence 3588988863321 123333332 2477888888654332111 11122234555433332 23456777776
Q ss_pred -CCCEEEEEeecC
Q 024063 122 -NTDFLVLARYMQ 133 (273)
Q Consensus 122 -~~Dlvv~ag~~~ 133 (273)
++|+++-.++.+
T Consensus 370 ~~pdliig~~~~~ 382 (428)
T cd01965 370 EPVDLLIGNSHGR 382 (428)
T ss_pred cCCCEEEECchhH
Confidence 699998766554
No 254
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=24.61 E-value=1.7e+02 Score=26.54 Aligned_cols=75 Identities=11% Similarity=0.128 Sum_probs=35.8
Q ss_pred CCceEEEEEECCch-hHHHHHHhhhcCCCCceEEEEeeC-CCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcC
Q 024063 45 PKYKVAVLASKQEH-CLVDFLYGWQEGKLPVEITCVISN-HDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQN 122 (273)
Q Consensus 45 ~~~kiav~~Sg~g~-~l~~ll~~~~~~~l~~~i~~Vvs~-~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~ 122 (273)
...+|..++ ..+ -...|..+++.|+ ..+| +|+. ++...+....+...+.|||+.+++. ..+...+++
T Consensus 107 ~~~~ILT~~--~S~~v~~~l~~a~~~~~-~~~V--~v~es~P~~eG~~~a~~L~~~gi~v~~i~d------~~~~~~m~~ 175 (282)
T PF01008_consen 107 DGDTILTHG--YSSTVERFLLSAKKKGK-KFRV--IVLESRPYNEGRLMAKELAEAGIPVTLIPD------SAVGYVMPR 175 (282)
T ss_dssp TTEEEEEES----SHHHHHHHHHHHTTE-EEEE--EEE--TTTTHHHTHHHHHHHTT-EEEEE-G------GGHHHHHHC
T ss_pred CCeEEEEeC--CchHHHHHHHHHHHcCC-eEEE--EEccCCcchhhhhHHHHhhhcceeEEEEec------hHHHHHHHH
Confidence 334444443 333 3455556665553 2444 3332 2211112234445668999998763 235556667
Q ss_pred -CCEEEEEe
Q 024063 123 -TDFLVLAR 130 (273)
Q Consensus 123 -~Dlvv~ag 130 (273)
+|.|++..
T Consensus 176 ~vd~VliGa 184 (282)
T PF01008_consen 176 DVDKVLIGA 184 (282)
T ss_dssp TESEEEEE-
T ss_pred hCCeeEEee
Confidence 88887654
No 255
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=24.56 E-value=2.2e+02 Score=27.25 Aligned_cols=57 Identities=11% Similarity=0.085 Sum_probs=31.7
Q ss_pred EEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHH---HHHHHhc--CCCEEEEEeecC
Q 024063 77 TCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREE---ELLELVQ--NTDFLVLARYMQ 133 (273)
Q Consensus 77 ~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~---~~~~~l~--~~Dlvv~ag~~~ 133 (273)
+.|||++.-.....+....+++|+.+..++...+...+ +..+.++ ++|.||-.|=+.
T Consensus 25 ~livtd~~~~~~~~v~~~L~~~g~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS 86 (374)
T cd08183 25 VLLVTGASSLRAAWLIEALRAAGIEVTHVVVAGEPSVELVDAAVAEARNAGCDVVIAIGGGS 86 (374)
T ss_pred EEEEECCchHHHHHHHHHHHHcCCeEEEecCCCCcCHHHHHHHHHHHHhcCCCEEEEecCch
Confidence 45677642111123455566788887665422233333 3333443 799999998776
No 256
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=24.50 E-value=1.1e+02 Score=31.06 Aligned_cols=38 Identities=18% Similarity=0.305 Sum_probs=29.7
Q ss_pred HHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCCCEEEEEeecC
Q 024063 90 HVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARYMQ 133 (273)
Q Consensus 90 ~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~Dlvv~ag~~~ 133 (273)
.+.+.|++.||+...+.+. +++.++| +||-+++.||+.
T Consensus 549 kiselaRe~giTlivvThr-----pEv~~AL-~PD~li~vgYg~ 586 (593)
T COG2401 549 KISELAREAGITLIVVTHR-----PEVGNAL-RPDTLILVGYGK 586 (593)
T ss_pred HHHHHHHHhCCeEEEEecC-----HHHHhcc-CCceeEEeeccc
Confidence 4567888999999876542 5677776 899999999986
No 257
>PRK06932 glycerate dehydrogenase; Provisional
Probab=24.35 E-value=5.9e+02 Score=23.84 Aligned_cols=89 Identities=15% Similarity=0.177 Sum_probs=53.7
Q ss_pred HHHHhcCCCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCCCCCCCCC----
Q 024063 116 LLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG---- 191 (273)
Q Consensus 116 ~~~~l~~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~---- 191 (273)
+.+++.++|+|++.- |+. -.-++++..+.++..+.+.+=+--| ||.
T Consensus 191 l~ell~~sDiv~l~~-----Plt--------------------~~T~~li~~~~l~~mk~ga~lIN~a-----RG~~Vde 240 (314)
T PRK06932 191 FEEVLKQADIVTLHC-----PLT--------------------ETTQNLINAETLALMKPTAFLINTG-----RGPLVDE 240 (314)
T ss_pred HHHHHHhCCEEEEcC-----CCC--------------------hHHhcccCHHHHHhCCCCeEEEECC-----CccccCH
Confidence 556677899998752 322 2234599999999998875544444 774
Q ss_pred hHHHHHHHhCCC-EeEEEEEEecCccCCCCeeE----EEEEecCCCCC
Q 024063 192 KPAKQAFDAGVK-LIGATSHFVTEELDAGPIIE----QMVERVSHRDN 234 (273)
Q Consensus 192 ~p~~~ai~~G~~-~~GvT~H~~~~~~D~G~Ii~----Q~~~~I~~~dt 234 (273)
..+..|+.+|.- ..|.-++.-++--..-|.+. ...+-+.|+..
T Consensus 241 ~AL~~aL~~g~i~gAaLDV~~~EP~~~~~pl~~~~~~~pnvilTPHia 288 (314)
T PRK06932 241 QALLDALENGKIAGAALDVLVKEPPEKDNPLIQAAKRLPNLLITPHIA 288 (314)
T ss_pred HHHHHHHHcCCccEEEEecCCCCCCCCCChhhHhhcCCCCEEECCccc
Confidence 577888888863 24444554444222234431 24555666654
No 258
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=24.14 E-value=2.5e+02 Score=29.09 Aligned_cols=70 Identities=24% Similarity=0.352 Sum_probs=42.0
Q ss_pred CceEEEEEECC-chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhc--C
Q 024063 46 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ--N 122 (273)
Q Consensus 46 ~~kiav~~Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~--~ 122 (273)
..+|.|+|.|+ |..+...+.+ +| .+++ +-+.| ..-.+.+++.|.++++-+. .++++++... +
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~--~g---~~vv--vID~d----~~~v~~~~~~g~~v~~GDa----t~~~~L~~agi~~ 464 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLS--SG---VKMT--VLDHD----PDHIETLRKFGMKVFYGDA----TRMDLLESAGAAK 464 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHh--CC---CCEE--EEECC----HHHHHHHHhcCCeEEEEeC----CCHHHHHhcCCCc
Confidence 46899999887 5555554543 12 3443 33432 2235666788999987652 2345565543 7
Q ss_pred CCEEEEEe
Q 024063 123 TDFLVLAR 130 (273)
Q Consensus 123 ~Dlvv~ag 130 (273)
+|.+|++-
T Consensus 465 A~~vvv~~ 472 (621)
T PRK03562 465 AEVLINAI 472 (621)
T ss_pred CCEEEEEe
Confidence 88887664
No 259
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=24.13 E-value=5.4e+02 Score=25.31 Aligned_cols=68 Identities=21% Similarity=0.130 Sum_probs=36.4
Q ss_pred EEEEEECCch-hHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCC--CchHHHHHHHhc
Q 024063 49 VAVLASKQEH-CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE--NEREEELLELVQ 121 (273)
Q Consensus 49 iav~~Sg~g~-~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~--~~~~~~~~~~l~ 121 (273)
-+++.+|+|+ .+++-+..+-+ +.+-+.|+.|-. ......++|+++|.++..+...- ..+-+++.+.|+
T Consensus 57 ~~~ll~gsGt~amEAav~sl~~---pgdkVLv~~nG~--FG~R~~~ia~~~g~~v~~~~~~wg~~v~p~~v~~~L~ 127 (383)
T COG0075 57 DVVLLSGSGTLAMEAAVASLVE---PGDKVLVVVNGK--FGERFAEIAERYGAEVVVLEVEWGEAVDPEEVEEALD 127 (383)
T ss_pred cEEEEcCCcHHHHHHHHHhccC---CCCeEEEEeCCh--HHHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHh
Confidence 3445555554 56665544332 223344555431 23446778888998888776331 123355666665
No 260
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=23.95 E-value=2.6e+02 Score=26.15 Aligned_cols=136 Identities=13% Similarity=0.161 Sum_probs=73.6
Q ss_pred ceEEEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHc-CCCEEEEc-CCCCchHHHHHHHhc---
Q 024063 47 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERH-GIPYHYLC-AKENEREEELLELVQ--- 121 (273)
Q Consensus 47 ~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~-gIp~~~~~-~~~~~~~~~~~~~l~--- 121 (273)
+||.|+|-|.|..++.+++. +. ..+++.|=-+ ..+.++|+++ .++-.... .+.+....+-.+.++
T Consensus 78 k~VLiiGgGdG~tlRevlkh---~~-ve~i~~VEID------~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~ 147 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKH---LP-VERITMVEID------PAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCE 147 (282)
T ss_pred CeEEEECCCccHHHHHHHhc---CC-cceEEEEEcC------HHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCC
Confidence 69999999999999999875 21 1344433222 3589999875 34432222 111222233444553
Q ss_pred -CCCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhc-----CCCeeEe-ecCCCCCCCCChHH
Q 024063 122 -NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSY-----GKDVINI-HHGLLPSFKGGKPA 194 (273)
Q Consensus 122 -~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~-----~~~~iNi-HpslLP~yRG~~p~ 194 (273)
..|+|++=++--.=| -..+...++.+.. +.|++-. +.| |.|.. ..+
T Consensus 148 ~~fDvIi~D~tdp~gp------------------------~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~--~~~~~-~~~ 200 (282)
T COG0421 148 EKFDVIIVDSTDPVGP------------------------AEALFTEEFYEGCRRALKEDGIFVAQAGS--PFLQD-EEI 200 (282)
T ss_pred CcCCEEEEcCCCCCCc------------------------ccccCCHHHHHHHHHhcCCCcEEEEecCC--cccch-HHH
Confidence 489999877654111 0114445555443 2343322 344 77777 566
Q ss_pred HHHHHhCCCEeEEEEEEec--CccCCC
Q 024063 195 KQAFDAGVKLIGATSHFVT--EELDAG 219 (273)
Q Consensus 195 ~~ai~~G~~~~GvT~H~~~--~~~D~G 219 (273)
..+..+..+.+...-.+.- +.+.+|
T Consensus 201 ~~~~~~~~~vf~~~~~~~~~ipt~~~g 227 (282)
T COG0421 201 ALAYRNVSRVFSIVPPYVAPIPTYPSG 227 (282)
T ss_pred HHHHHHHHhhccccccceeccceecCC
Confidence 6666655554444433332 456666
No 261
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=23.85 E-value=4.9e+02 Score=25.84 Aligned_cols=83 Identities=5% Similarity=0.007 Sum_probs=42.5
Q ss_pred CCceEEEEE-ECCc-h-hHHHHHHhhhcCCCCceEEEEee-CCCCCC-CcHHHHHHHHcCCCEEEEcCCCCchHHHHHHH
Q 024063 45 PKYKVAVLA-SKQE-H-CLVDFLYGWQEGKLPVEITCVIS-NHDRGP-NSHVIRFLERHGIPYHYLCAKENEREEELLEL 119 (273)
Q Consensus 45 ~~~kiav~~-Sg~g-~-~l~~ll~~~~~~~l~~~i~~Vvs-~~~~~~-~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~ 119 (273)
+..+|+++| +|.| | .+..|...+....-+..+ ++++ +..+.. -..+..+|+.+|+|+..+... .++...
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v-~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~-----~dl~~a 263 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKV-ALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDI-----ADLQLM 263 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeE-EEEecCCcchhHHHHHHHHHHHcCCceecCCCH-----HHHHHH
Confidence 456788888 4555 3 344443322111111333 4444 332221 133668899999999865421 122222
Q ss_pred ---hcCCCEEEEEeecC
Q 024063 120 ---VQNTDFLVLARYMQ 133 (273)
Q Consensus 120 ---l~~~Dlvv~ag~~~ 133 (273)
+.+.|++++-..++
T Consensus 264 l~~l~~~d~VLIDTaGr 280 (420)
T PRK14721 264 LHELRGKHMVLIDTVGM 280 (420)
T ss_pred HHHhcCCCEEEecCCCC
Confidence 33778887765544
No 262
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=23.85 E-value=1.2e+02 Score=28.67 Aligned_cols=81 Identities=17% Similarity=0.183 Sum_probs=38.4
Q ss_pred CCceEEEEEECC-chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCC
Q 024063 45 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 123 (273)
Q Consensus 45 ~~~kiav~~Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~ 123 (273)
+++||+|+|.|. |+.+...+- .+.+..+++.+=.+.+. ....+.++. +..|+.... +.+...-++.++++
T Consensus 2 ~~~Ki~IiGaG~VG~~~a~~l~---~~~~~~el~LiD~~~~~-~~g~a~Dl~--~~~~~~~~~---~v~~~~dy~~~~~a 72 (312)
T cd05293 2 PRNKVTVVGVGQVGMACAISIL---AKGLADELVLVDVVEDK-LKGEAMDLQ--HGSAFLKNP---KIEADKDYSVTANS 72 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHH---hcCCCCEEEEEeCCccH-HHHHHHHHH--HhhccCCCC---EEEECCCHHHhCCC
Confidence 567999999876 443332222 23455677654323321 112222222 333332100 01100012336699
Q ss_pred CEEEE-EeecCC
Q 024063 124 DFLVL-ARYMQP 134 (273)
Q Consensus 124 Dlvv~-ag~~~~ 134 (273)
|+||+ +|-.++
T Consensus 73 divvitaG~~~k 84 (312)
T cd05293 73 KVVIVTAGARQN 84 (312)
T ss_pred CEEEECCCCCCC
Confidence 99987 787664
No 263
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=23.84 E-value=2.1e+02 Score=29.48 Aligned_cols=70 Identities=19% Similarity=0.281 Sum_probs=41.7
Q ss_pred CceEEEEEECC-chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhc--C
Q 024063 46 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ--N 122 (273)
Q Consensus 46 ~~kiav~~Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~--~ 122 (273)
+.+|.|+|.|+ |..+...+.. . +.+++ +-++| ....+.+++.|.++++-+. .++++++... +
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~--~---g~~vv--vID~d----~~~v~~~~~~g~~v~~GDa----t~~~~L~~agi~~ 464 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMA--N---KMRIT--VLERD----ISAVNLMRKYGYKVYYGDA----TQLELLRAAGAEK 464 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHh--C---CCCEE--EEECC----HHHHHHHHhCCCeEEEeeC----CCHHHHHhcCCcc
Confidence 46888888876 4555444442 1 24554 33332 2345677889999987652 2345565554 7
Q ss_pred CCEEEEEe
Q 024063 123 TDFLVLAR 130 (273)
Q Consensus 123 ~Dlvv~ag 130 (273)
+|.+|++-
T Consensus 465 A~~vv~~~ 472 (601)
T PRK03659 465 AEAIVITC 472 (601)
T ss_pred CCEEEEEe
Confidence 88777654
No 264
>TIGR03013 EpsB_2 sugar transferase, PEP-CTERM system associated. Members of this protein family belong to the family of bacterial sugar transferases (pfam02397). Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria (notable exceptions appear to include Magnetococcus sp. MC-1 and Myxococcus xanthus DK 1622 ). These genes are generally found near one or more of the PrsK, PrsR or PrsT genes that have been related to the PEP-CTERM system by phylogenetic profiling methods. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species. These proteins are homologs of the EpsB protien found in Methylobacillus sp. strain 12S, which is also associated with a PEP-CTERM system, but of a distinct type. A name which appears attached to a number of genes (by transitive annotation) in this family is "undecapre
Probab=23.76 E-value=2.8e+02 Score=27.18 Aligned_cols=37 Identities=14% Similarity=0.120 Sum_probs=21.6
Q ss_pred CCceEEEEEECCc-hhHHHHHHhhhcCCCCceEEEEeeCC
Q 024063 45 PKYKVAVLASKQE-HCLVDFLYGWQEGKLPVEITCVISNH 83 (273)
Q Consensus 45 ~~~kiav~~Sg~g-~~l~~ll~~~~~~~l~~~i~~Vvs~~ 83 (273)
...|+.|+|+|.. ..+++++.. ++..+.++++++...
T Consensus 123 ~~rrvLIIGag~~~~~L~~l~~~--~~~~g~~vVGfi~~d 160 (442)
T TIGR03013 123 LKRRILVLGTGPRAREIARLRRS--SDRRGHEIVGFVPLP 160 (442)
T ss_pred CCCcEEEEECCHHHHHHHHHHHh--CccCCeEEEEEEcCC
Confidence 3467888887653 233333321 244568899998643
No 265
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=23.66 E-value=7e+02 Score=24.39 Aligned_cols=140 Identities=16% Similarity=0.165 Sum_probs=77.0
Q ss_pred cHHHHHHHHcCCCEEEEcCCCCc------hHHHHHHHhcCCCEEEEEeecCCcchhhHhhhhhhhhhhhcccCccccccc
Q 024063 89 SHVIRFLERHGIPYHYLCAKENE------REEELLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFN 162 (273)
Q Consensus 89 ~~~~~~a~~~gIp~~~~~~~~~~------~~~~~~~~l~~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~ 162 (273)
..+.+.++.+|..+..++..... ...++.++++++|+|++. +|+. -.-+
T Consensus 164 ~~vA~~~~~fGm~V~~~d~~~~~~~~~~~~~~~l~ell~~sDiVslh-----~Plt--------------------~~T~ 218 (409)
T PRK11790 164 TQLSVLAESLGMRVYFYDIEDKLPLGNARQVGSLEELLAQSDVVSLH-----VPET--------------------PSTK 218 (409)
T ss_pred HHHHHHHHHCCCEEEEECCCcccccCCceecCCHHHHHhhCCEEEEc-----CCCC--------------------hHHh
Confidence 34667777778877776632110 112466667789999876 3432 1233
Q ss_pred ccCChhHHhhcCCCeeEeecCCCCCCCCC----hHHHHHHHhCCCEeEE--EEEEecCccC----CCCeeEEEEEecCCC
Q 024063 163 MILSGKFLRSYGKDVINIHHGLLPSFKGG----KPAKQAFDAGVKLIGA--TSHFVTEELD----AGPIIEQMVERVSHR 232 (273)
Q Consensus 163 ~il~~~~l~~~~~~~iNiHpslLP~yRG~----~p~~~ai~~G~~~~Gv--T~H~~~~~~D----~G~Ii~Q~~~~I~~~ 232 (273)
+++..+.++..+.+.+=+--| ||. ..+..|+.+|. ..|+ -++.-.+-.. ..+.+....+-+.|+
T Consensus 219 ~li~~~~l~~mk~ga~lIN~a-----RG~~vde~aL~~aL~~g~-i~gaalDVf~~EP~~~~~~~~~pL~~~~nvilTPH 292 (409)
T PRK11790 219 NMIGAEELALMKPGAILINAS-----RGTVVDIDALADALKSGH-LAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPH 292 (409)
T ss_pred hccCHHHHhcCCCCeEEEECC-----CCcccCHHHHHHHHHcCC-ceEEEEcCCCCCCCCccccccchhhcCCCEEECCc
Confidence 588999999888774433333 663 56788888887 3444 4444433221 134555556667766
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 024063 233 DNLRTFVQKSEDVEKQCLAKAIKSYCELR 261 (273)
Q Consensus 233 dt~~~L~~rl~~~~~~ll~~~i~~l~~g~ 261 (273)
-...+.. ..+...++..+.+..+.+|.
T Consensus 293 ia~~t~e--a~~~~~~~~~~nl~~~~~~~ 319 (409)
T PRK11790 293 IGGSTQE--AQENIGLEVAGKLVKYSDNG 319 (409)
T ss_pred CCCCHHH--HHHHHHHHHHHHHHHHHcCC
Confidence 4332221 11222344455555555543
No 266
>PLN02712 arogenate dehydrogenase
Probab=23.54 E-value=2.4e+02 Score=29.67 Aligned_cols=64 Identities=14% Similarity=0.253 Sum_probs=35.3
Q ss_pred CCceEEEEEECC-chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHh-cC
Q 024063 45 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELV-QN 122 (273)
Q Consensus 45 ~~~kiav~~Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l-~~ 122 (273)
+++||+|+|.|. |..+..-+.. .| ++|.+ + +++. ..+.|++.|+... .. ..+.+ .+
T Consensus 51 ~~~kIgIIG~G~mG~slA~~L~~--~G---~~V~~-~-dr~~-----~~~~A~~~Gv~~~--~d--------~~e~~~~~ 108 (667)
T PLN02712 51 TQLKIAIIGFGNYGQFLAKTLIS--QG---HTVLA-H-SRSD-----HSLAARSLGVSFF--LD--------PHDLCERH 108 (667)
T ss_pred CCCEEEEEccCHHHHHHHHHHHH--CC---CEEEE-E-eCCH-----HHHHHHHcCCEEe--CC--------HHHHhhcC
Confidence 468999999886 4444333322 13 46543 3 3321 2356888887542 11 11223 26
Q ss_pred CCEEEEEe
Q 024063 123 TDFLVLAR 130 (273)
Q Consensus 123 ~Dlvv~ag 130 (273)
+|+|+++-
T Consensus 109 aDvViLav 116 (667)
T PLN02712 109 PDVILLCT 116 (667)
T ss_pred CCEEEEcC
Confidence 89999884
No 267
>PRK05788 cobalamin biosynthesis protein CbiG; Validated
Probab=23.43 E-value=2.1e+02 Score=27.16 Aligned_cols=59 Identities=14% Similarity=0.214 Sum_probs=37.8
Q ss_pred eEEEEEEC--CchhHHH----HHHhhhcCCC-CceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEc
Q 024063 48 KVAVLASK--QEHCLVD----FLYGWQEGKL-PVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 106 (273)
Q Consensus 48 kiav~~Sg--~g~~l~~----ll~~~~~~~l-~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~ 106 (273)
|..++|-| .|...+. +.+++++..+ +..|.++.|-..+..+..+.+.|+++|+|+..++
T Consensus 193 ~~l~vGIGcrrg~~~e~i~~ai~~~L~~~~i~~~~i~~iatid~K~~E~gL~~~a~~lg~pl~~~~ 258 (315)
T PRK05788 193 KNVVLGIGCRKGVSAEEIAEAVERALEALNIDPRAVKAIASITLKKDEPGLLQLAEELGVPFITFS 258 (315)
T ss_pred CeEEEeeccCCCCCHHHHHHHHHHHHHHcCCCHHHccEEeeeeccCCCHHHHHHHHHhCCCeEEeC
Confidence 45666655 4543333 3333444333 3567777776655556789999999999999886
No 268
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=23.33 E-value=6.5e+02 Score=23.93 Aligned_cols=116 Identities=17% Similarity=0.231 Sum_probs=67.4
Q ss_pred HHHHhcCCCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCCCCCCCCC----
Q 024063 116 LLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG---- 191 (273)
Q Consensus 116 ~~~~l~~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~---- 191 (273)
+.++++++|++++.. |+.++ -++++..+.++..+.+.+=+--| ||.
T Consensus 194 l~ell~~sDii~l~~-----Plt~~--------------------T~hLin~~~l~~mk~ga~lVNta-----RG~~VDe 243 (324)
T COG1052 194 LDELLAESDIISLHC-----PLTPE--------------------TRHLINAEELAKMKPGAILVNTA-----RGGLVDE 243 (324)
T ss_pred HHHHHHhCCEEEEeC-----CCChH--------------------HhhhcCHHHHHhCCCCeEEEECC-----CccccCH
Confidence 445666899998764 43222 34599999999998875544433 774
Q ss_pred hHHHHHHHhCC-CEeEEEEEEecCc-cCCCCeeEEEE---EecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcee
Q 024063 192 KPAKQAFDAGV-KLIGATSHFVTEE-LDAGPIIEQMV---ERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLP 264 (273)
Q Consensus 192 ~p~~~ai~~G~-~~~GvT~H~~~~~-~D~G~Ii~Q~~---~~I~~~dt~~~L~~rl~~~~~~ll~~~i~~l~~g~~~~ 264 (273)
..+..|+.+|. ...|.-++.-.+. .|. +...-.. +-+.|+--..+. .......+...+.+..+.+|+..+
T Consensus 244 ~ALi~AL~~g~i~gaglDV~e~Ep~~~d~-~l~~l~~~~~vvltPHia~at~--ea~~~m~~~~~~nl~~~~~g~~~~ 318 (324)
T COG1052 244 QALIDALKSGKIAGAGLDVFENEPALFDH-PLLRLDNFPNVVLTPHIASATE--EARKAMAELALENLEAFFDGGVPP 318 (324)
T ss_pred HHHHHHHHhCCcceEEeeecCCCCCCCCh-hHhhccCCCCEEEccccccccH--HHHHHHHHHHHHHHHHHHcCCCCC
Confidence 57788888887 3466666665555 232 2222223 556665444442 222333444555555555665443
No 269
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=23.32 E-value=1.8e+02 Score=27.12 Aligned_cols=70 Identities=24% Similarity=0.256 Sum_probs=38.0
Q ss_pred CCceEEEEEECC-chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCC
Q 024063 45 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 123 (273)
Q Consensus 45 ~~~kiav~~Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~ 123 (273)
+..||+|+|.|. |..+...+.. .| ..+| .+++++ .....++|+++|..+. + -+++.+.+.++
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~--~g--~~~V--~v~~r~---~~ra~~la~~~g~~~~--~------~~~~~~~l~~a 239 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAA--KG--VAEI--TIANRT---YERAEELAKELGGNAV--P------LDELLELLNEA 239 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHH--cC--CCEE--EEEeCC---HHHHHHHHHHcCCeEE--e------HHHHHHHHhcC
Confidence 458999998865 3322222221 12 1333 344552 2335678888886322 1 12345556689
Q ss_pred CEEEEEee
Q 024063 124 DFLVLARY 131 (273)
Q Consensus 124 Dlvv~ag~ 131 (273)
|+||.+--
T Consensus 240 DvVi~at~ 247 (311)
T cd05213 240 DVVISATG 247 (311)
T ss_pred CEEEECCC
Confidence 99998753
No 270
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=23.30 E-value=2.9e+02 Score=26.57 Aligned_cols=84 Identities=15% Similarity=0.035 Sum_probs=45.6
Q ss_pred ceEEEEE--ECCchh--HHHHHHhh-hcCCCCceEEEEeeCCCCCC--CcHHHHHHHHcCC--CEEEEcCCCCchHHHHH
Q 024063 47 YKVAVLA--SKQEHC--LVDFLYGW-QEGKLPVEITCVISNHDRGP--NSHVIRFLERHGI--PYHYLCAKENEREEELL 117 (273)
Q Consensus 47 ~kiav~~--Sg~g~~--l~~ll~~~-~~~~l~~~i~~Vvs~~~~~~--~~~~~~~a~~~gI--p~~~~~~~~~~~~~~~~ 117 (273)
-++.|++ ||..|| +++| +++ +...-+.+|.+..+.+.... ...|.+.+++.-= .+.... +...-++-.
T Consensus 145 ~~~tIlvGNSgd~SN~Hie~L-~~l~~~~~~~v~ii~PlsYp~gn~~Yi~~V~~~~~~lF~~~~~~~L~--e~l~f~eYl 221 (322)
T PRK02797 145 GKMTILVGNSGDRSNRHIEAL-RALHQQFGDNVKIIVPMGYPANNQAYIEEVRQAGLALFGAENFQILT--EKLPFDDYL 221 (322)
T ss_pred CceEEEEeCCCCCcccHHHHH-HHHHHHhCCCeEEEEECCcCCCCHHHHHHHHHHHHHhcCcccEEehh--hhCCHHHHH
Confidence 3566766 666565 4443 222 11222578887887753221 2346666665432 122221 123345667
Q ss_pred HHhcCCCEEEEEeecC
Q 024063 118 ELVQNTDFLVLARYMQ 133 (273)
Q Consensus 118 ~~l~~~Dlvv~ag~~~ 133 (273)
++|.++|+.+.....|
T Consensus 222 ~lL~~~Dl~~f~~~RQ 237 (322)
T PRK02797 222 ALLRQCDLGYFIFARQ 237 (322)
T ss_pred HHHHhCCEEEEeechh
Confidence 7777999999887665
No 271
>PRK11914 diacylglycerol kinase; Reviewed
Probab=23.26 E-value=2.7e+02 Score=25.60 Aligned_cols=36 Identities=17% Similarity=0.152 Sum_probs=18.3
Q ss_pred CceEEEEE---ECCchh---HHHHHHhhhcCCCCceEEEEeeCC
Q 024063 46 KYKVAVLA---SKQEHC---LVDFLYGWQEGKLPVEITCVISNH 83 (273)
Q Consensus 46 ~~kiav~~---Sg~g~~---l~~ll~~~~~~~l~~~i~~Vvs~~ 83 (273)
++|+.++. ||++.. +..+.+.+++. ..++..+.|..
T Consensus 8 ~~~~~iI~NP~sG~g~~~~~~~~~~~~l~~~--g~~~~~~~t~~ 49 (306)
T PRK11914 8 IGKVTVLTNPLSGHGAAPHAAERAIARLHHR--GVDVVEIVGTD 49 (306)
T ss_pred CceEEEEECCCCCCCcHHHHHHHHHHHHHHc--CCeEEEEEeCC
Confidence 47888887 454432 33444444332 24544455544
No 272
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=23.20 E-value=1.7e+02 Score=24.46 Aligned_cols=75 Identities=19% Similarity=0.251 Sum_probs=35.9
Q ss_pred CCceEEEEEECC-chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcC-C--C-----------
Q 024063 45 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA-K--E----------- 109 (273)
Q Consensus 45 ~~~kiav~~Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~-~--~----------- 109 (273)
++.||+|+|.|. |.....++..+ +++++.. +. .....+..+..+--...+.. . .
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~l-----Ga~v~~~--d~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 87 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGL-----GAEVVVP--DE----RPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYE 87 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHT-----T-EEEEE--ES----SHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHC-----CCEEEec--cC----CHHHHHhhhcccCceEEEcccccccccccchhhhhH
Confidence 458999999876 45555566543 4665422 21 11234444554443333320 0 0
Q ss_pred --CchHHHHHHHhcCCCEEEEEe
Q 024063 110 --NEREEELLELVQNTDFLVLAR 130 (273)
Q Consensus 110 --~~~~~~~~~~l~~~Dlvv~ag 130 (273)
......+.+.++.+|+++.++
T Consensus 88 ~~~~~~~~f~~~i~~~d~vI~~~ 110 (168)
T PF01262_consen 88 HPESYESNFAEFIAPADIVIGNG 110 (168)
T ss_dssp HCCHHHHHHHHHHHH-SEEEEHH
T ss_pred HHHHhHHHHHHHHhhCcEEeeec
Confidence 112234556666789998644
No 273
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=23.08 E-value=5.1e+02 Score=25.42 Aligned_cols=81 Identities=14% Similarity=0.155 Sum_probs=47.4
Q ss_pred eEEEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCC---CcHHHHHHHHcCCCEEEEcCCC-CchHHHHH---HHh
Q 024063 48 KVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGP---NSHVIRFLERHGIPYHYLCAKE-NEREEELL---ELV 120 (273)
Q Consensus 48 kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~---~~~~~~~a~~~gIp~~~~~~~~-~~~~~~~~---~~l 120 (273)
+-.+|+.|. ++.+.+.+.+ +..+=+.|||++.-.. -..+.+..++.||.+..++.-. +.+.+.+. +.+
T Consensus 8 ~~i~fG~g~---l~~l~~~~~~--~g~~r~liVTd~~~~~~g~~~~v~~~L~~~~i~~~if~~v~p~P~~~~v~~~~~~~ 82 (377)
T COG1454 8 TEILFGRGS---LKELGEEVKR--LGAKRALIVTDRGLAKLGLLDKVLDSLDAAGIEYEVFDEVEPEPTIETVEAGAEVA 82 (377)
T ss_pred ceEEecCCh---HHHHHHHHHh--cCCCceEEEECCccccchhHHHHHHHHHhcCCeEEEecCCCCCCCHHHHHHHHHHH
Confidence 344566554 3444443322 1234467899874211 2457777888999998887322 23333333 444
Q ss_pred c--CCCEEEEEeecC
Q 024063 121 Q--NTDFLVLARYMQ 133 (273)
Q Consensus 121 ~--~~Dlvv~ag~~~ 133 (273)
+ ++|.||..|=+-
T Consensus 83 ~~~~~D~iIalGGGS 97 (377)
T COG1454 83 REFGPDTIIALGGGS 97 (377)
T ss_pred HhcCCCEEEEeCCcc
Confidence 4 899999998776
No 274
>PRK05948 precorrin-2 methyltransferase; Provisional
Probab=23.04 E-value=5e+02 Score=23.46 Aligned_cols=78 Identities=18% Similarity=0.143 Sum_probs=44.4
Q ss_pred ceEEEEEECCc---hhHHHHHHhhhcC--CCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCC-----CCchHHHH
Q 024063 47 YKVAVLASKQE---HCLVDFLYGWQEG--KLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAK-----ENEREEEL 116 (273)
Q Consensus 47 ~kiav~~Sg~g---~~l~~ll~~~~~~--~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~-----~~~~~~~~ 116 (273)
.+++++.+|.. +....+++.+++. ....+| |.. -+.+...|...|+|...-+.. ...+.+++
T Consensus 93 ~~v~~l~~GDp~~ys~~~~l~~~l~~~~~~~~vei---vPG-----Iss~~a~aa~~g~pL~~~~e~l~ii~~~~~~~~l 164 (238)
T PRK05948 93 EDVAFACEGDVSFYSTFTYLAQTLQELYPQVAIQT---IPG-----VCSPLAAAAALGIPLTLGSQRLAILPALYHLEEL 164 (238)
T ss_pred CeEEEEeCCChHHHHHHHHHHHHHHhcCCCCCEEE---ECC-----hhHHHHHHHHhCCCeecCCCeEEEEcCCCCHHHH
Confidence 67999999974 3445555554431 233443 321 245678888999998742211 01123445
Q ss_pred HHHhcCCCEEEEEeec
Q 024063 117 LELVQNTDFLVLARYM 132 (273)
Q Consensus 117 ~~~l~~~Dlvv~ag~~ 132 (273)
.+.+...|.+|+.+-.
T Consensus 165 ~~~l~~~~~vVlmk~~ 180 (238)
T PRK05948 165 EQALTWADVVVLMKVS 180 (238)
T ss_pred HHHHhCCCEEEEEECC
Confidence 5555667888877633
No 275
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=22.99 E-value=2.1e+02 Score=22.41 Aligned_cols=16 Identities=19% Similarity=0.293 Sum_probs=13.3
Q ss_pred cHHHHHHHHcCCCEEE
Q 024063 89 SHVIRFLERHGIPYHY 104 (273)
Q Consensus 89 ~~~~~~a~~~gIp~~~ 104 (273)
..+.+.|.++|||+..
T Consensus 89 ~~iRR~A~~~~Ip~~T 104 (112)
T cd00532 89 TALLRLARLYKIPVTT 104 (112)
T ss_pred HHHHHHHHHcCCCEEE
Confidence 4578889999999985
No 276
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=22.69 E-value=4e+02 Score=23.20 Aligned_cols=156 Identities=15% Similarity=0.163 Sum_probs=77.9
Q ss_pred CceEEEEEECC-chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCCC
Q 024063 46 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 124 (273)
Q Consensus 46 ~~kiav~~Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~D 124 (273)
.++|+|.|.|+ |..+...|.. . .++|+ +++.+ ...+.++++.+|... ++. +++... ++|
T Consensus 28 gk~v~I~G~G~vG~~~A~~L~~--~---G~~Vv--v~D~~---~~~~~~~~~~~g~~~--v~~------~~l~~~--~~D 87 (200)
T cd01075 28 GKTVAVQGLGKVGYKLAEHLLE--E---GAKLI--VADIN---EEAVARAAELFGATV--VAP------EEIYSV--DAD 87 (200)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--C---CCEEE--EEcCC---HHHHHHHHHHcCCEE--Ecc------hhhccc--cCC
Confidence 37899999875 4444333322 2 36665 45542 223455556656432 221 122211 799
Q ss_pred EEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCCCCCCCCChHHHHHHHhCCCE
Q 024063 125 FLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKL 204 (273)
Q Consensus 125 lvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~p~~~ai~~G~~~ 204 (273)
+++.+.-.. ++..+.++..+.++|- =.+--|--. +-...++..
T Consensus 88 v~vp~A~~~------------------------------~I~~~~~~~l~~~~v~-~~AN~~~~~---~~~~~~L~~--- 130 (200)
T cd01075 88 VFAPCALGG------------------------------VINDDTIPQLKAKAIA-GAANNQLAD---PRHGQMLHE--- 130 (200)
T ss_pred EEEeccccc------------------------------ccCHHHHHHcCCCEEE-ECCcCccCC---HhHHHHHHH---
Confidence 998776555 8888888877655432 222222221 333333332
Q ss_pred eEEEEEEecC-ccCCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCce
Q 024063 205 IGATSHFVTE-ELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVL 263 (273)
Q Consensus 205 ~GvT~H~~~~-~~D~G~Ii~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~i~~l~~g~~~ 263 (273)
-|+ +++.. ..-+|-++......+. + ..++..+|+... .+.+.++++.-.+..+.
T Consensus 131 ~Gi--~~~Pd~~~NaGGv~~~~~e~~~-~-~~~~~~~~~~~~-~~~~~~v~~~a~~~~~~ 185 (200)
T cd01075 131 RGI--LYAPDYVVNAGGLINVADELYG-G-NEARVLAKVEAI-YDTLLEIFAQAKQDGIT 185 (200)
T ss_pred CCC--EEeCceeeeCcCceeehhHHhC-C-cHHHHHHHHHHH-HHHHHHHHHHHHHhCcC
Confidence 233 34443 2335655553222222 1 244566776655 55666666555444443
No 277
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=22.60 E-value=3e+02 Score=25.88 Aligned_cols=56 Identities=18% Similarity=0.064 Sum_probs=35.5
Q ss_pred eEEEEEECCc--hhHHHHHHhhhcCCCCceEEEEeeCCCCCC---CcHHHHHHHHcCC-CEEEEcC
Q 024063 48 KVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP---NSHVIRFLERHGI-PYHYLCA 107 (273)
Q Consensus 48 kiav~~Sg~g--~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~---~~~~~~~a~~~gI-p~~~~~~ 107 (273)
|+++..||+- +.+..++... .| .++.+|..++.-.. ...+.++|+++|+ |+..++.
T Consensus 1 kVlVa~SGGVDSsvla~ll~~~-lG---~~v~aV~vd~g~~~~~E~~~~~~~~~~~g~i~~~vvd~ 62 (295)
T cd01997 1 KVILALSGGVDSTVAAVLLHKA-IG---DRLTCVFVDNGLLRKNEAERVEELFSKLLGINLIVVDA 62 (295)
T ss_pred CEEEEEcCChHHHHHHHHHHHH-hC---CcEEEEEecCCCCChHHHHHHHHHHHHhCCCcEEEEcC
Confidence 6788889863 3444444331 13 46778877764211 2347888988886 9988764
No 278
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=22.56 E-value=2.8e+02 Score=24.72 Aligned_cols=70 Identities=17% Similarity=0.229 Sum_probs=36.6
Q ss_pred ceEEEEEECC-chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHH-HHcCCCEEEEcCCCCchHHHHHHHh--cC
Q 024063 47 YKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFL-ERHGIPYHYLCAKENEREEELLELV--QN 122 (273)
Q Consensus 47 ~kiav~~Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a-~~~gIp~~~~~~~~~~~~~~~~~~l--~~ 122 (273)
||++|+|-|+ |..+...|.. + .+++++|..+++ .+.+++ .+.+.-++..+ ..+++.++.+ ++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~--~---g~~Vv~Id~d~~-----~~~~~~~~~~~~~~v~gd----~t~~~~L~~agi~~ 66 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSE--E---GHNVVLIDRDEE-----RVEEFLADELDTHVVIGD----ATDEDVLEEAGIDD 66 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHh--C---CCceEEEEcCHH-----HHHHHhhhhcceEEEEec----CCCHHHHHhcCCCc
Confidence 5788998876 4444443432 2 367887777652 233322 23444444333 1223344333 37
Q ss_pred CCEEEEEe
Q 024063 123 TDFLVLAR 130 (273)
Q Consensus 123 ~Dlvv~ag 130 (273)
+|.++.+-
T Consensus 67 aD~vva~t 74 (225)
T COG0569 67 ADAVVAAT 74 (225)
T ss_pred CCEEEEee
Confidence 88776554
No 279
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=22.40 E-value=1.4e+02 Score=29.27 Aligned_cols=13 Identities=31% Similarity=0.319 Sum_probs=10.4
Q ss_pred CCceEEEEEECCc
Q 024063 45 PKYKVAVLASKQE 57 (273)
Q Consensus 45 ~~~kiav~~Sg~g 57 (273)
++|||.|+|||..
T Consensus 3 ~~~kvLviG~g~r 15 (426)
T PRK13789 3 VKLKVLLIGSGGR 15 (426)
T ss_pred CCcEEEEECCCHH
Confidence 4589999998864
No 280
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=22.36 E-value=7.9e+02 Score=24.52 Aligned_cols=86 Identities=12% Similarity=0.151 Sum_probs=40.4
Q ss_pred CceEEEEE-ECCc--hhHHHHHHhhhcCCCCceEEEEeeCCCCCCC-cHHHHHHHHcCCCEEEEcCCCCc-h-HHHHHHH
Q 024063 46 KYKVAVLA-SKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPN-SHVIRFLERHGIPYHYLCAKENE-R-EEELLEL 119 (273)
Q Consensus 46 ~~kiav~~-Sg~g--~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~-~~~~~~a~~~gIp~~~~~~~~~~-~-~~~~~~~ 119 (273)
+.-|++.| .|.| |....|...++.. +..|..|=++.-++.. ..+..+|++.|+|++......+. . ..+-++.
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~--G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~ 177 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRK--GFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEK 177 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC--CCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHH
Confidence 34455555 3444 3344443333322 2455434333322211 12456788999999864321110 0 0112222
Q ss_pred hc--CCCEEEEEeecC
Q 024063 120 VQ--NTDFLVLARYMQ 133 (273)
Q Consensus 120 l~--~~Dlvv~ag~~~ 133 (273)
++ +.|+|++=.=++
T Consensus 178 ~~~~~~DvViIDTaGr 193 (429)
T TIGR01425 178 FKKENFDIIIVDTSGR 193 (429)
T ss_pred HHhCCCCEEEEECCCC
Confidence 32 689998866555
No 281
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=22.32 E-value=3.9e+02 Score=22.68 Aligned_cols=108 Identities=14% Similarity=0.193 Sum_probs=57.7
Q ss_pred EEEECCch-hHHH-HHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCC-chHHHHHHHhcCCCEEE
Q 024063 51 VLASKQEH-CLVD-FLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKEN-EREEELLELVQNTDFLV 127 (273)
Q Consensus 51 v~~Sg~g~-~l~~-ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~-~~~~~~~~~l~~~Dlvv 127 (273)
|.-||.-+ .-++ +.+.++...|+.+.++-+|+++..-++++.-+-.+-+ ++. -+++.. .+.-.....++++|+||
T Consensus 3 VYLsGEIHtdWRe~I~~ga~~~~L~v~F~~pvtdH~aSD~~G~~iLG~e~~-~fw-~D~k~a~iNaiRT~~li~~aDvvV 80 (144)
T TIGR03646 3 VYLAGEIHTDWREEIKEGAKSKNLPIVFSGPVTDHEASDNIGEDILGKQPS-NFW-RDDAAASINNIRTRKLIEKADVVI 80 (144)
T ss_pred EEEcCcccchHHHHHHHHHHHcCCCeEEecCCCCCcchhhhhHHHhCCCCc-ccc-ccccccchhhHHHHHHHhhCCEEE
Confidence 45567653 4443 6667777788888888899987654555433322221 221 122211 11112233445899885
Q ss_pred EEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeeEeecCC
Q 024063 128 LARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGL 184 (273)
Q Consensus 128 ~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~~~~~~~iNiHpsl 184 (273)
+.|+-+ || +|++ -+...........+|-+||--
T Consensus 81 -vrFGek----------YK-----QWNa--------AfDAg~aaAlgKplI~lh~~~ 113 (144)
T TIGR03646 81 -ALFGEK----------YK-----QWNA--------AFDAGYAAALGKPLIILRPEE 113 (144)
T ss_pred -EEechH----------HH-----HHHH--------HhhHHHHHHcCCCeEEecchh
Confidence 677752 11 1111 233444555567788888864
No 282
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=22.21 E-value=3.6e+02 Score=26.61 Aligned_cols=39 Identities=15% Similarity=0.337 Sum_probs=25.8
Q ss_pred HHHHHHHHcCCCEEEEcCCCCchHHHHHHHhc---CCCEEEEEeecC
Q 024063 90 HVIRFLERHGIPYHYLCAKENEREEELLELVQ---NTDFLVLARYMQ 133 (273)
Q Consensus 90 ~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~---~~Dlvv~ag~~~ 133 (273)
.+..+|+..|+|+..... .+++.+.++ ++|+|++=.-++
T Consensus 269 qL~~~a~~~~vp~~~~~~-----~~~l~~~l~~~~~~DlVlIDt~G~ 310 (424)
T PRK05703 269 QLKTYAKIMGIPVEVVYD-----PKELAKALEQLRDCDVILIDTAGR 310 (424)
T ss_pred HHHHHHHHhCCceEccCC-----HHhHHHHHHHhCCCCEEEEeCCCC
Confidence 367789999999976432 233444443 789999884443
No 283
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=22.08 E-value=2.3e+02 Score=21.87 Aligned_cols=38 Identities=21% Similarity=0.216 Sum_probs=23.3
Q ss_pred HHHhhhcCCCCceEEEEeeCCCCC----CCcHHHHHHHHcCCCEEE
Q 024063 63 FLYGWQEGKLPVEITCVISNHDRG----PNSHVIRFLERHGIPYHY 104 (273)
Q Consensus 63 ll~~~~~~~l~~~i~~Vvs~~~~~----~~~~~~~~a~~~gIp~~~ 104 (273)
+.+.+++| ++..||..++.. .+..+.+.|-++|||+..
T Consensus 59 i~~~i~~~----~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 59 IVDLIKNG----EIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred HHHHHHcC----CeEEEEECCCCCccCccHHHHHHHHHHhCCCEEe
Confidence 44444454 455566543221 134578889999999985
No 284
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=21.89 E-value=2.4e+02 Score=25.74 Aligned_cols=67 Identities=12% Similarity=0.106 Sum_probs=39.7
Q ss_pred hHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchH---HHHHHHhcCCCEEEEEeecC
Q 024063 59 CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENERE---EELLELVQNTDFLVLARYMQ 133 (273)
Q Consensus 59 ~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~---~~~~~~l~~~Dlvv~ag~~~ 133 (273)
+++++++. + +.+++.|.|.++ ........|-++|.+++. ......+. +++.++.++..+.+.+||++
T Consensus 58 ~~~~ll~~---~--~iD~V~Iatp~~--~H~e~~~~AL~aGkhVl~-EKPla~t~~ea~~l~~~a~~~~~~l~v~~~~ 127 (342)
T COG0673 58 DLEELLAD---P--DIDAVYIATPNA--LHAELALAALEAGKHVLC-EKPLALTLEEAEELVELARKAGVKLMVGFNR 127 (342)
T ss_pred CHHHHhcC---C--CCCEEEEcCCCh--hhHHHHHHHHhcCCEEEE-cCCCCCCHHHHHHHHHHHHHcCCceeeehhh
Confidence 45555543 2 245554554432 345677888999998874 33322232 34555555568888999987
No 285
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=21.78 E-value=3.6e+02 Score=24.75 Aligned_cols=67 Identities=18% Similarity=0.178 Sum_probs=35.1
Q ss_pred ceEEEEEECC-chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCCCE
Q 024063 47 YKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDF 125 (273)
Q Consensus 47 ~kiav~~Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~Dl 125 (273)
+||+|+|.|. |..+...+.. .| ...+|. ++ +++ ..-.+.+++.|+....... ..+.+.++|+
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~--~g-~~~~V~-~~-dr~----~~~~~~a~~~g~~~~~~~~--------~~~~~~~aDv 69 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRR--LG-LAGEIV-GA-DRS----AETRARARELGLGDRVTTS--------AAEAVKGADL 69 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHh--cC-CCcEEE-EE-ECC----HHHHHHHHhCCCCceecCC--------HHHHhcCCCE
Confidence 6899999886 4444332221 13 123443 33 331 1234566777764332211 1223458999
Q ss_pred EEEEe
Q 024063 126 LVLAR 130 (273)
Q Consensus 126 vv~ag 130 (273)
||++-
T Consensus 70 Viiav 74 (307)
T PRK07502 70 VILCV 74 (307)
T ss_pred EEECC
Confidence 99886
No 286
>PRK07680 late competence protein ComER; Validated
Probab=21.75 E-value=2.4e+02 Score=25.46 Aligned_cols=66 Identities=20% Similarity=0.362 Sum_probs=32.6
Q ss_pred ceEEEEEECC-chhH-HHHHHhhhcCCCC-ceEEEEeeCCCCCCCcHHHHHHHHc-CCCEEEEcCCCCchHHHHHHHhcC
Q 024063 47 YKVAVLASKQ-EHCL-VDFLYGWQEGKLP-VEITCVISNHDRGPNSHVIRFLERH-GIPYHYLCAKENEREEELLELVQN 122 (273)
Q Consensus 47 ~kiav~~Sg~-g~~l-~~ll~~~~~~~l~-~~i~~Vvs~~~~~~~~~~~~~a~~~-gIp~~~~~~~~~~~~~~~~~~l~~ 122 (273)
+||+|+|.|. |+.+ ..|++ .|.+. .+| .+++++ ......++++. |+.+. .. .+ +.+.+
T Consensus 1 m~I~iIG~G~mG~ala~~L~~---~g~~~~~~v--~v~~r~---~~~~~~~~~~~~g~~~~--~~-----~~---~~~~~ 62 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLE---SGAVKPSQL--TITNRT---PAKAYHIKERYPGIHVA--KT-----IE---EVISQ 62 (273)
T ss_pred CEEEEECccHHHHHHHHHHHH---CCCCCcceE--EEECCC---HHHHHHHHHHcCCeEEE--CC-----HH---HHHHh
Confidence 4799999876 4433 33433 23222 233 344442 12344555554 55432 11 11 23457
Q ss_pred CCEEEEEe
Q 024063 123 TDFLVLAR 130 (273)
Q Consensus 123 ~Dlvv~ag 130 (273)
+|+|+++-
T Consensus 63 aDiVilav 70 (273)
T PRK07680 63 SDLIFICV 70 (273)
T ss_pred CCEEEEec
Confidence 89998875
No 287
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=21.58 E-value=2e+02 Score=29.57 Aligned_cols=57 Identities=19% Similarity=0.176 Sum_probs=38.9
Q ss_pred ceEEEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEE
Q 024063 47 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYH 103 (273)
Q Consensus 47 ~kiav~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~ 103 (273)
.+|=|.+||...+++++.+.++.+...+-+++=+-+...-.-..+++++++.|||+.
T Consensus 481 ~~ipviasGG~g~~~d~~~~~~~~~~~a~~aa~~fh~~~~~~~~~k~~l~~~gi~vr 537 (538)
T PLN02617 481 VTIPVIASSGAGTPEHFSDVFSKTNASAALAAGIFHRKEVPISSVKEHLLEEGIETR 537 (538)
T ss_pred CCCCEEEECCCCCHHHHHHHHhcCCccEEEEEeeeccCCCCHHHHHHHHHHCCCccC
Confidence 567889999888888888887655433444433334433334568899999999874
No 288
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=21.53 E-value=1.8e+02 Score=30.03 Aligned_cols=44 Identities=20% Similarity=0.349 Sum_probs=33.5
Q ss_pred cHHHHHHHHcCCCEEEEc-CCC---------------CchHHHHHHHhcCCCEEEEEeec
Q 024063 89 SHVIRFLERHGIPYHYLC-AKE---------------NEREEELLELVQNTDFLVLARYM 132 (273)
Q Consensus 89 ~~~~~~a~~~gIp~~~~~-~~~---------------~~~~~~~~~~l~~~Dlvv~ag~~ 132 (273)
..+.+++.+.++|+++.+ -|. ...++++.+.++.+|+|+.+|-.
T Consensus 227 ~~~~~l~~~t~~p~~~~pmGKg~idEs~P~y~GvY~G~~s~~~vre~vE~aD~il~iG~~ 286 (557)
T COG3961 227 KELKKLINATGFPVATLPMGKGVIDESHPNYLGVYNGKLSEPEVREAVESADLILTIGVL 286 (557)
T ss_pred HHHHHHHHhcCCCeEEeecccccccccCCCeeeEEecccCCHHHHHHhhcCCEEEEeceE
Confidence 457889999999999887 221 12356888888899999999854
No 289
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=21.43 E-value=1.5e+02 Score=28.92 Aligned_cols=69 Identities=19% Similarity=0.218 Sum_probs=37.3
Q ss_pred CCceEEEEEECC-chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCC
Q 024063 45 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 123 (273)
Q Consensus 45 ~~~kiav~~Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~ 123 (273)
+..+|+|+|+|. |..+...+.. .| ..+| +++++. ......+|+++|..+.. -+++.+.+.++
T Consensus 181 ~~~~vlViGaG~iG~~~a~~L~~--~G--~~~V--~v~~r~---~~ra~~la~~~g~~~~~--------~~~~~~~l~~a 243 (423)
T PRK00045 181 SGKKVLVIGAGEMGELVAKHLAE--KG--VRKI--TVANRT---LERAEELAEEFGGEAIP--------LDELPEALAEA 243 (423)
T ss_pred cCCEEEEECchHHHHHHHHHHHH--CC--CCeE--EEEeCC---HHHHHHHHHHcCCcEee--------HHHHHHHhccC
Confidence 347899998875 3332222221 23 1233 344552 23446688888764321 12344556689
Q ss_pred CEEEEEe
Q 024063 124 DFLVLAR 130 (273)
Q Consensus 124 Dlvv~ag 130 (273)
|+||.+.
T Consensus 244 DvVI~aT 250 (423)
T PRK00045 244 DIVISST 250 (423)
T ss_pred CEEEECC
Confidence 9999875
No 290
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=21.37 E-value=8.1e+02 Score=24.28 Aligned_cols=79 Identities=16% Similarity=0.139 Sum_probs=38.9
Q ss_pred CceEEEEEECCc-hhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhc--C
Q 024063 46 KYKVAVLASKQE-HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ--N 122 (273)
Q Consensus 46 ~~kiav~~Sg~g-~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~--~ 122 (273)
.+|++|++.+.- ..+..++. .++..+++++.+.... .....+..++.+--...++ +....++.+.++ +
T Consensus 325 GkrvaI~~~~~~~~~l~~~l~----~ElGmevv~~~~~~~~--~~~~~~~~~~~~~~~~~i~---d~~~~e~~~~i~~~~ 395 (457)
T TIGR01284 325 GKKVWVWSGGPKLWHWPRPLE----DELGMEVVAVSTKFGH--EDDYEKIIARVREGTVIID---DPNELELEEIIEKYK 395 (457)
T ss_pred CCEEEEECCCcHHHHHHHHHH----HhCCCEEEEEEEEeCC--HHHHHHHHHhcCCCeEEEe---CCCHHHHHHHHHhcC
Confidence 478988764321 23333332 2345788887664311 1222333333221112222 123456666665 8
Q ss_pred CCEEEEEeecC
Q 024063 123 TDFLVLARYMQ 133 (273)
Q Consensus 123 ~Dlvv~ag~~~ 133 (273)
||+++..++.+
T Consensus 396 pDllig~~~~~ 406 (457)
T TIGR01284 396 PDIILTGIREG 406 (457)
T ss_pred CCEEEecCCcc
Confidence 99988666555
No 291
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=21.35 E-value=4.4e+02 Score=23.49 Aligned_cols=67 Identities=10% Similarity=0.107 Sum_probs=42.5
Q ss_pred EEEEECCchhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhc-CCCEEEE
Q 024063 50 AVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ-NTDFLVL 128 (273)
Q Consensus 50 av~~Sg~g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~-~~Dlvv~ 128 (273)
+.++.|+-.+.+..-.+...| ++. ++|.. .+..+.+.|.++|||+..-. ..-.|+.+..+ .+|++-+
T Consensus 67 ~~IGAGTVl~~~~a~~a~~aG---A~F--ivsP~---~~~~vi~~a~~~~i~~iPG~----~TptEi~~a~~~Ga~~vKl 134 (212)
T PRK05718 67 ALIGAGTVLNPEQLAQAIEAG---AQF--IVSPG---LTPPLLKAAQEGPIPLIPGV----STPSELMLGMELGLRTFKF 134 (212)
T ss_pred CEEEEeeccCHHHHHHHHHcC---CCE--EECCC---CCHHHHHHHHHcCCCEeCCC----CCHHHHHHHHHCCCCEEEE
Confidence 345666665655555555555 454 45544 34579999999999998322 12235666776 8999876
No 292
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=21.22 E-value=3.4e+02 Score=26.22 Aligned_cols=62 Identities=15% Similarity=0.200 Sum_probs=33.1
Q ss_pred chhHHHHHHhhhcCCCCceEEEEeeCCCCCC--CcHH-HHHHHHcCCCEEEEcCCCCchHHHHHHHhc--CCCEEEE
Q 024063 57 EHCLVDFLYGWQEGKLPVEITCVISNHDRGP--NSHV-IRFLERHGIPYHYLCAKENEREEELLELVQ--NTDFLVL 128 (273)
Q Consensus 57 g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~--~~~~-~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~--~~Dlvv~ 128 (273)
|+.+..|..+.++|+ ...+ +++.. +|. +... .....+.|||+..+.. ..+...+. ++|.|++
T Consensus 165 gTal~~i~~A~~~gk-~~~V--~v~Es-RP~~qG~~lta~eL~~~GI~vtlI~D------sa~~~~M~~~~vd~Viv 231 (344)
T PRK05720 165 GTALAPIYAAKEKGI-DIHV--YADET-RPRLQGARLTAWELYQAGIDVTVITD------NMAAHLMQTGKIDAVIV 231 (344)
T ss_pred hHHHHHHHHHHHcCC-ceEE--EEcCC-CChhhhHHHHHHHHHHCCCCEEEEcc------cHHHHHhcccCCCEEEE
Confidence 455655556666664 2333 34322 222 2212 3446788999998763 12344443 5787764
No 293
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=21.01 E-value=3.5e+02 Score=23.51 Aligned_cols=60 Identities=17% Similarity=0.239 Sum_probs=37.2
Q ss_pred cHHHHHHHHcCCCEEEEcC------CCCchH-----HHHHHH--------h---cCCCEEEEEeecCCcchhhHhhhhhh
Q 024063 89 SHVIRFLERHGIPYHYLCA------KENERE-----EELLEL--------V---QNTDFLVLARYMQPVPLQKEAYLGYK 146 (273)
Q Consensus 89 ~~~~~~a~~~gIp~~~~~~------~~~~~~-----~~~~~~--------l---~~~Dlvv~ag~~~~~p~~~~~~~~~~ 146 (273)
..+.++|++.|||+..-.. .....+ -++... + .++|+|+..|... +-+.+-++
T Consensus 53 e~l~elaEkl~iPVvtT~~~~~~~~~kgv~~~~~~lg~lg~~~~~p~~e~~~g~~~~DlvlfvG~~~-----~~~~~~l~ 127 (171)
T PRK00945 53 DRAVKIAKKANIPVAATGGSYKGLIDKGVDAKYINLHELTNYLKDPNWKGLDGNGNYDLVIFIGVTY-----YYASQGLS 127 (171)
T ss_pred HHHHHHHHHHCCCEEEccccccccccCCccCCcccHHHHHhhccCchhhhhcCCCCcCEEEEecCCc-----hhHHHHHH
Confidence 3488999999999987553 100000 022222 2 2689999999877 34555566
Q ss_pred hhhhhcc
Q 024063 147 LLESLSS 153 (273)
Q Consensus 147 ~~~~~~~ 153 (273)
.+|.|+|
T Consensus 128 ~lk~f~~ 134 (171)
T PRK00945 128 ALKHFSP 134 (171)
T ss_pred HHhhcCC
Confidence 6666666
No 294
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=21.00 E-value=89 Score=25.41 Aligned_cols=55 Identities=15% Similarity=0.280 Sum_probs=27.8
Q ss_pred ceEEEEEECCchhH--------HHHHHhhhcCCCCceEEE-EeeCCCCCCCcHHHHHHHHcCCCEEEEc
Q 024063 47 YKVAVLASKQEHCL--------VDFLYGWQEGKLPVEITC-VISNHDRGPNSHVIRFLERHGIPYHYLC 106 (273)
Q Consensus 47 ~kiav~~Sg~g~~l--------~~ll~~~~~~~l~~~i~~-Vvs~~~~~~~~~~~~~a~~~gIp~~~~~ 106 (273)
.||-|+|....+=| ...++.+-. .++.| |+|.. ......+.+.|+++|+|+...+
T Consensus 49 ~RIQiiG~~E~~yl~~l~~~~r~~~l~~l~~----~~~P~iIvt~~-~~~p~~l~e~a~~~~ipll~t~ 112 (127)
T PF02603_consen 49 NRIQIIGNTESAYLNSLDEEERKERLEKLFS----YNPPCIIVTRG-LEPPPELIELAEKYNIPLLRTP 112 (127)
T ss_dssp CSEEEE-HHHHHHHCCS-HHHHCCHHHHHCT----TT-S-EEEETT-T---HHHHHHHHHCT--EEEES
T ss_pred CeEEEEcHHHHHHHHHCCHHHHHHHHHHHhC----CCCCEEEEECc-CCCCHHHHHHHHHhCCcEEEcC
Confidence 59999997643211 112222222 33434 45544 3345678999999999999755
No 295
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=20.92 E-value=1.3e+02 Score=24.47 Aligned_cols=42 Identities=21% Similarity=0.392 Sum_probs=25.3
Q ss_pred HHHhhhcCCCCceEEEEeeCCCCCC--CcHHHHHHHHcCCCEEEEcC
Q 024063 63 FLYGWQEGKLPVEITCVISNHDRGP--NSHVIRFLERHGIPYHYLCA 107 (273)
Q Consensus 63 ll~~~~~~~l~~~i~~Vvs~~~~~~--~~~~~~~a~~~gIp~~~~~~ 107 (273)
..+++++|. +..+ |++..-+|. -..+-.+|+++|||+.++.+
T Consensus 35 ~~Kai~~g~--a~LV-viA~Dv~P~~~~~~l~~lc~~~~vpyv~V~s 78 (116)
T COG1358 35 VTKAIERGK--AKLV-VIAEDVSPEELVKHLPALCEEKNVPYVYVGS 78 (116)
T ss_pred HHHHHHcCC--CcEE-EEecCCCHHHHHHHHHHHHHhcCCCEEEeCC
Confidence 344445553 4443 444432222 24577899999999999874
No 296
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=20.79 E-value=1.9e+02 Score=22.37 Aligned_cols=36 Identities=19% Similarity=0.254 Sum_probs=21.7
Q ss_pred HHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCCCEEEEEe
Q 024063 91 VIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLAR 130 (273)
Q Consensus 91 ~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~Dlvv~ag 130 (273)
+.+.|+++|+++..... ...++.+...++|+++++.
T Consensus 23 ~~~~~~~~gi~~~v~a~----~~~~~~~~~~~~Dvill~p 58 (95)
T TIGR00853 23 MNKAAEEYGVPVKIAAG----SYGAAGEKLDDADVVLLAP 58 (95)
T ss_pred HHHHHHHCCCcEEEEEe----cHHHHHhhcCCCCEEEECc
Confidence 35778888888765332 1233444445788887653
No 297
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=20.71 E-value=1.7e+02 Score=27.61 Aligned_cols=118 Identities=20% Similarity=0.258 Sum_probs=61.6
Q ss_pred HHHHcCCCEEEEcCCCCchHHHHHHHhc--CCCEEEEEeecCCcchhhHhhhhhhhhhhhcccCcccccccccCChhHHh
Q 024063 94 FLERHGIPYHYLCAKENEREEELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLR 171 (273)
Q Consensus 94 ~a~~~gIp~~~~~~~~~~~~~~~~~~l~--~~Dlvv~ag~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~~il~~~~l~ 171 (273)
.-++.|||++-+.-.++...+.+.++|+ +||++|+-|- ++++ ++-+.-..|..|-+ +..|++
T Consensus 123 ~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~~~PDIlViTGH--------D~~~-----K~~~d~~dl~~Yrn---SkyFVe 186 (283)
T TIGR02855 123 LYKKIGVPVVGIHCKEKEMPEKVLDLIEEVRPDILVITGH--------DAYS-----KNKGNYMDLNAYRH---SKYFVE 186 (283)
T ss_pred HHHHhCCceEEEEecchhchHHHHHHHHHhCCCEEEEeCc--------hhhh-----cCCCChhhhhhhhh---hHHHHH
Confidence 3367899987554233333456777886 8999999883 2222 11111222223322 333443
Q ss_pred hcCC-CeeEeecCCCCCCCCCh-HHHHHH-HhCC----CEeEEEEEEecCccCCCCeeEEEEEecCCCC
Q 024063 172 SYGK-DVINIHHGLLPSFKGGK-PAKQAF-DAGV----KLIGATSHFVTEELDAGPIIEQMVERVSHRD 233 (273)
Q Consensus 172 ~~~~-~~iNiHpslLP~yRG~~-p~~~ai-~~G~----~~~GvT~H~~~~~~D~G~Ii~Q~~~~I~~~d 233 (273)
.-+. +-..=|.--|==|.|+. ..+-|| .+|. +-.-+-+|-+| |++.-+++...+-+
T Consensus 187 aVk~aR~y~~~~D~LVIFAGACQS~yEall~AGANFASSP~RVlIHalD------PV~i~eKia~T~i~ 249 (283)
T TIGR02855 187 TVREARKYVPSLDQLVIFAGACQSHFESLIRAGANFASSPSRVNIHALD------PVYIVEKISFTPFM 249 (283)
T ss_pred HHHHHHhcCCCcccEEEEcchhHHHHHHHHHcCccccCCccceEEeccC------cceeEEeeeecccc
Confidence 3211 11222333455567754 445554 5665 34557788776 55566666555543
No 298
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=20.69 E-value=3.1e+02 Score=25.24 Aligned_cols=64 Identities=11% Similarity=0.148 Sum_probs=34.3
Q ss_pred ceEEEEEECC-chhHHH-HHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCCC
Q 024063 47 YKVAVLASKQ-EHCLVD-FLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 124 (273)
Q Consensus 47 ~kiav~~Sg~-g~~l~~-ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~D 124 (273)
+||+|+|.|. |+.+.. |.+ .| ++|. +.+++ ...+ +.+.+.|+... . ..+++.+.+.++|
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~---~g---~~V~--~~dr~---~~~~-~~l~~~g~~~~--~-----s~~~~~~~~~~~d 61 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAK---RG---HDCV--GYDHD---QDAV-KAMKEDRTTGV--A-----NLRELSQRLSAPR 61 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHH---CC---CEEE--EEECC---HHHH-HHHHHcCCccc--C-----CHHHHHhhcCCCC
Confidence 4899999986 565543 333 23 5653 23542 1223 33344554332 1 1234555556789
Q ss_pred EEEEE
Q 024063 125 FLVLA 129 (273)
Q Consensus 125 lvv~a 129 (273)
+|+++
T Consensus 62 vIi~~ 66 (298)
T TIGR00872 62 VVWVM 66 (298)
T ss_pred EEEEE
Confidence 99876
No 299
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=20.57 E-value=75 Score=19.05 Aligned_cols=13 Identities=31% Similarity=0.447 Sum_probs=11.3
Q ss_pred CChHHHHHHHhCC
Q 024063 190 GGKPAKQAFDAGV 202 (273)
Q Consensus 190 G~~p~~~ai~~G~ 202 (273)
|..|++||...|.
T Consensus 2 G~TpLh~A~~~~~ 14 (33)
T PF00023_consen 2 GNTPLHYAAQRGH 14 (33)
T ss_dssp SBBHHHHHHHTTC
T ss_pred cccHHHHHHHHHH
Confidence 7889999999885
No 300
>COG2403 Predicted GTPase [General function prediction only]
Probab=20.56 E-value=2.5e+02 Score=27.98 Aligned_cols=80 Identities=19% Similarity=0.246 Sum_probs=47.2
Q ss_pred CCCceEEEEEECC--chhHHHHHHhhhcCCCCceEEEEee-----CCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHH
Q 024063 44 DPKYKVAVLASKQ--EHCLVDFLYGWQEGKLPVEITCVIS-----NHDRGPNSHVIRFLERHGIPYHYLCAKENEREEEL 116 (273)
Q Consensus 44 ~~~~kiav~~Sg~--g~~l~~ll~~~~~~~l~~~i~~Vvs-----~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~ 116 (273)
+.++|+++++-|. .++....++. .+ ..+++++.+ -.++...++.......+|||++... .-+++
T Consensus 4 ~a~kRviiLgaggrdfhv~n~a~r~--~~--~yevvaf~aaqiiG~~er~yppsleg~~~p~Gvpi~~~k-----~~~~l 74 (449)
T COG2403 4 KARKRVIILGAGGRDFHVFNVALRD--NP--EYEVVAFTAAQIIGGTERIYPPSLEGVLYPLGVPILPEK-----DYDDL 74 (449)
T ss_pred CCceeEEEEeccCcccchhhHHhcc--CC--cceEEEEEEEEecCCccccCCCCcccccccCCccccccc-----cHHHH
Confidence 4568999999775 4666665553 12 244444322 2222223445666678999998532 13567
Q ss_pred HHHhc--CCCEEEEEeecC
Q 024063 117 LELVQ--NTDFLVLARYMQ 133 (273)
Q Consensus 117 ~~~l~--~~Dlvv~ag~~~ 133 (273)
.+.++ ++|.+|++ |.-
T Consensus 75 ek~ire~~VD~~Vla-ySD 92 (449)
T COG2403 75 EKIIREKDVDIVVLA-YSD 92 (449)
T ss_pred HHHHHHcCCCeEEEE-ccc
Confidence 77776 78977754 554
No 301
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=20.47 E-value=3.8e+02 Score=24.39 Aligned_cols=19 Identities=32% Similarity=0.335 Sum_probs=13.3
Q ss_pred CceEEEEEECC-chhHHHHH
Q 024063 46 KYKVAVLASKQ-EHCLVDFL 64 (273)
Q Consensus 46 ~~kiav~~Sg~-g~~l~~ll 64 (273)
|+||+|+|.|. |+.+...+
T Consensus 1 mmkI~iiG~G~mG~~~a~~L 20 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVL 20 (325)
T ss_pred CCEEEEECCCHHHHHHHHHH
Confidence 47999999986 55554443
No 302
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=20.43 E-value=2.5e+02 Score=24.45 Aligned_cols=17 Identities=29% Similarity=0.415 Sum_probs=12.0
Q ss_pred HHHHHHhcCCCEEEEEe
Q 024063 114 EELLELVQNTDFLVLAR 130 (273)
Q Consensus 114 ~~~~~~l~~~Dlvv~ag 130 (273)
+.+.+.+.++|+||.+.
T Consensus 103 ~~~~~~~~~~D~Vi~~~ 119 (202)
T TIGR02356 103 ENLELLINNVDLVLDCT 119 (202)
T ss_pred HHHHHHHhCCCEEEECC
Confidence 44555666899998775
No 303
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=20.33 E-value=4e+02 Score=22.03 Aligned_cols=63 Identities=14% Similarity=0.220 Sum_probs=30.5
Q ss_pred CceEEEEEECC-chhHHH-HHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCC
Q 024063 46 KYKVAVLASKQ-EHCLVD-FLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 123 (273)
Q Consensus 46 ~~kiav~~Sg~-g~~l~~-ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~ 123 (273)
|+||+|+|-|. |+.+.. |+++ | +++. +.++. ....+.+.+.| ...+++ ..+.++++
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~---g---~~v~--~~d~~----~~~~~~~~~~g--~~~~~s--------~~e~~~~~ 58 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKA---G---YEVT--VYDRS----PEKAEALAEAG--AEVADS--------PAEAAEQA 58 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHT---T---TEEE--EEESS----HHHHHHHHHTT--EEEESS--------HHHHHHHB
T ss_pred CCEEEEEchHHHHHHHHHHHHhc---C---CeEE--eeccc----hhhhhhhHHhh--hhhhhh--------hhhHhhcc
Confidence 58999999987 666544 4332 3 5553 34542 12233344456 322221 22344467
Q ss_pred CEEEEEe
Q 024063 124 DFLVLAR 130 (273)
Q Consensus 124 Dlvv~ag 130 (273)
|+|+++=
T Consensus 59 dvvi~~v 65 (163)
T PF03446_consen 59 DVVILCV 65 (163)
T ss_dssp SEEEE-S
T ss_pred cceEeec
Confidence 9888763
No 304
>PRK08655 prephenate dehydrogenase; Provisional
Probab=20.24 E-value=3.2e+02 Score=26.91 Aligned_cols=64 Identities=16% Similarity=0.392 Sum_probs=34.4
Q ss_pred ceEEEEE-ECC-chhHHHHHHhhhcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCCC
Q 024063 47 YKVAVLA-SKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 124 (273)
Q Consensus 47 ~kiav~~-Sg~-g~~l~~ll~~~~~~~l~~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~D 124 (273)
+||+|+| +|. |..+...+.. .| ++|. + .+++ .....+.|.+.|+.+. . +..+.+.++|
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~--~G---~~V~-v-~~r~---~~~~~~~a~~~gv~~~--~--------~~~e~~~~aD 60 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKE--KG---FEVI-V-TGRD---PKKGKEVAKELGVEYA--N--------DNIDAAKDAD 60 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHH--CC---CEEE-E-EECC---hHHHHHHHHHcCCeec--c--------CHHHHhccCC
Confidence 5899997 564 4444333322 23 4553 2 2332 1234577888887421 1 1223455889
Q ss_pred EEEEEe
Q 024063 125 FLVLAR 130 (273)
Q Consensus 125 lvv~ag 130 (273)
+|+++-
T Consensus 61 vVIlav 66 (437)
T PRK08655 61 IVIISV 66 (437)
T ss_pred EEEEec
Confidence 999875
No 305
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=20.12 E-value=3.2e+02 Score=24.76 Aligned_cols=44 Identities=18% Similarity=0.199 Sum_probs=25.4
Q ss_pred ceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCCCEEEEEe
Q 024063 74 VEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLAR 130 (273)
Q Consensus 74 ~~i~~Vvs~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~Dlvv~ag 130 (273)
.++ .|+|+++ .+.++.+|+... ++. +-.++.+.+.++|++|+.|
T Consensus 29 ~~~-~v~s~~p-------~~~~~~~~v~~~--~r~---~~~~~~~~l~~~D~vI~gG 72 (298)
T TIGR03609 29 VEP-TVLSNDP-------AETAKLYGVEAV--NRR---SLLAVLRALRRADVVIWGG 72 (298)
T ss_pred CeE-EEecCCh-------HHHHhhcCceEE--ccC---CHHHHHHHHHHCCEEEECC
Confidence 454 4666553 355677788654 221 1235666666888887665
No 306
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=20.06 E-value=8.7e+02 Score=24.18 Aligned_cols=39 Identities=15% Similarity=0.207 Sum_probs=24.9
Q ss_pred HHHHHHHHcCCCEEEEcCCCCchHHHHHHHhc------CCCEEEEEeecC
Q 024063 90 HVIRFLERHGIPYHYLCAKENEREEELLELVQ------NTDFLVLARYMQ 133 (273)
Q Consensus 90 ~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~------~~Dlvv~ag~~~ 133 (273)
.+..+|+..|+|++.... .+++.+.++ +.|+|++=.=++
T Consensus 252 QLk~yae~lgvpv~~~~d-----p~dL~~al~~l~~~~~~D~VLIDTAGr 296 (407)
T PRK12726 252 QFQGYADKLDVELIVATS-----PAELEEAVQYMTYVNCVDHILIDTVGR 296 (407)
T ss_pred HHHHHhhcCCCCEEecCC-----HHHHHHHHHHHHhcCCCCEEEEECCCC
Confidence 567789999999985421 223433332 589998765554
No 307
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=20.03 E-value=2.7e+02 Score=20.67 Aligned_cols=38 Identities=29% Similarity=0.263 Sum_probs=23.4
Q ss_pred HHHHhhhcCCCCceEEEEeeCCCC-CC-----CcHHHHHHHHcCCCEE
Q 024063 62 DFLYGWQEGKLPVEITCVISNHDR-GP-----NSHVIRFLERHGIPYH 103 (273)
Q Consensus 62 ~ll~~~~~~~l~~~i~~Vvs~~~~-~~-----~~~~~~~a~~~gIp~~ 103 (273)
.+++.+++| +|..||..+.. .. ...+.+.|.++|||+.
T Consensus 46 ~i~~~i~~g----~id~VIn~~~~~~~~~~~d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 46 AILDLIKNG----EIDLVINTLYPLGAQPHEDGKALRRAAENIDIPGA 89 (90)
T ss_pred HHHHHhcCC----CeEEEEECCCcCcceeccCcHHHHHHHHHcCCCee
Confidence 355555554 45666665432 11 3457888999999985
Done!