Your job contains 1 sequence.
>024064
MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFC
YWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQS
ICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGY
CILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYF
HCLERGRAASAKLSDFLRRSLQSKLPGDLSKAE
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 024064
(273 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2075351 - symbol:AT3G46210 "AT3G46210" species... 863 1.1e-101 2
UNIPROTKB|Q84T68 - symbol:RRP46 "Exosome complex exonucle... 703 9.4e-82 2
UNIPROTKB|Q9NQT4 - symbol:EXOSC5 "Exosome complex compone... 286 1.0e-34 3
UNIPROTKB|E1BAG2 - symbol:EXOSC5 "Uncharacterized protein... 282 7.0e-34 3
RGD|1307861 - symbol:Exosc5 "exosome component 5" species... 279 8.8e-34 3
MGI|MGI:107889 - symbol:Exosc5 "exosome component 5" spec... 278 1.1e-33 3
ZFIN|ZDB-GENE-060503-675 - symbol:exosc5 "exosome compone... 282 5.1e-32 3
TAIR|locus:2060111 - symbol:AT2G07110 "AT2G07110" species... 163 3.0e-21 2
TAIR|locus:2076710 - symbol:RRP41 "AT3G61620" species:370... 169 2.6e-15 2
MGI|MGI:1923576 - symbol:Exosc4 "exosome component 4" spe... 167 4.2e-14 2
FB|FBgn0037815 - symbol:Rrp46 "Rrp46" species:7227 "Droso... 164 1.3e-13 2
WB|WBGene00007201 - symbol:exos-4.1 species:6239 "Caenorh... 165 2.5e-13 2
UNIPROTKB|Q17533 - symbol:exos-4.1 "Putative exosome comp... 165 2.5e-13 2
RGD|1310986 - symbol:Exosc4 "exosome component 4" species... 162 3.5e-13 2
UNIPROTKB|Q9NPD3 - symbol:EXOSC4 "Exosome complex compone... 161 3.9e-13 2
UNIPROTKB|Q7YRA3 - symbol:EXOSC4 "Exosome complex compone... 160 6.1e-13 2
FB|FBgn0032487 - symbol:Ski6 "Ski6" species:7227 "Drosoph... 148 9.7e-13 2
UNIPROTKB|E2RIM3 - symbol:EXOSC4 "Uncharacterized protein... 155 3.6e-12 2
UNIPROTKB|F1RSL0 - symbol:EXOSC4 "Uncharacterized protein... 155 3.6e-12 2
UNIPROTKB|F1RH84 - symbol:EXOSC5 "Uncharacterized protein... 125 9.9e-12 2
UNIPROTKB|Q28F19 - symbol:exosc6 "Exosome complex compone... 155 2.7e-11 2
POMBASE|SPBC115.01c - symbol:rrp46 "exosome subunit Rrp46... 147 2.1e-10 2
ZFIN|ZDB-GENE-040426-1702 - symbol:exosc4 "exosome compon... 139 3.8e-10 2
SGD|S000003327 - symbol:RRP46 "Exosome non-catalytic core... 152 1.8e-09 1
TAIR|locus:2124024 - symbol:RRP41L "AT4G27490" species:37... 143 2.7e-09 2
WB|WBGene00000798 - symbol:crn-5 species:6239 "Caenorhabd... 128 3.7e-09 2
UNIPROTKB|Q5RKV6 - symbol:EXOSC6 "Exosome complex compone... 122 4.5e-09 3
CGD|CAL0002905 - symbol:orf19.4582 species:5476 "Candida ... 140 8.3e-09 2
POMBASE|SPAC3G9.10c - symbol:rrp41 "exosomal 3'-to-5' pho... 140 1.1e-08 2
ZFIN|ZDB-GENE-050522-362 - symbol:exosc6 "exosome compone... 141 1.5e-08 2
UNIPROTKB|Q95Z09 - symbol:RRP41B "Rrp41p homologue" speci... 123 1.7e-07 2
RGD|1309832 - symbol:Exosc6 "exosome component 6" species... 117 2.0e-06 2
ASPGD|ASPL0000013004 - symbol:AN3812 species:162425 "Emer... 123 2.2e-06 2
MGI|MGI:1919794 - symbol:Exosc6 "exosome component 6" spe... 116 2.7e-06 2
UNIPROTKB|G4MM07 - symbol:MGG_06785 "Exosome complex exon... 131 2.8e-06 1
UNIPROTKB|Q95Z13 - symbol:RRP41A "Rrp41p homologue" speci... 127 6.1e-06 1
SGD|S000003427 - symbol:SKI6 "Exosome non-catalytic core ... 111 1.1e-05 2
FB|FBgn0036916 - symbol:Mtr3 "Mtr3" species:7227 "Drosoph... 120 7.6e-05 1
UNIPROTKB|G4MRK3 - symbol:MGG_16298 "Uncharacterized prot... 112 0.00039 1
GENEDB_PFALCIPARUM|PFB0415c - symbol:PFB0415c "hypothetic... 109 0.00099 1
UNIPROTKB|O96177 - symbol:PFB0415c "3' exoribonuclease, p... 109 0.00099 1
>TAIR|locus:2075351 [details] [associations]
symbol:AT3G46210 "AT3G46210" species:3702 "Arabidopsis
thaliana" [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0006396 "RNA processing"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] [GO:0001510 "RNA methylation" evidence=RCA]
[GO:0006626 "protein targeting to mitochondrion" evidence=RCA]
[GO:0051604 "protein maturation" evidence=RCA] InterPro:IPR001247
Pfam:PF01138 EMBL:CP002686 GenomeReviews:BA000014_GR
InterPro:IPR020568 SUPFAM:SSF54211 eggNOG:COG0689
HOGENOM:HOG000229515 KO:K12590 OMA:VRETCEA ProtClustDB:CLSN2684812
EMBL:AL355775 EMBL:BT003125 EMBL:AK228171 EMBL:AK317261
EMBL:AK317537 IPI:IPI00521571 PIR:T49262 RefSeq:NP_001030817.1
RefSeq:NP_001030818.1 RefSeq:NP_001030819.1 RefSeq:NP_001078250.1
RefSeq:NP_001190019.1 RefSeq:NP_190207.1 UniGene:At.43331
ProteinModelPortal:Q9LX74 SMR:Q9LX74 IntAct:Q9LX74 STRING:Q9LX74
PaxDb:Q9LX74 PRIDE:Q9LX74 EnsemblPlants:AT3G46210.1
EnsemblPlants:AT3G46210.2 EnsemblPlants:AT3G46210.3
EnsemblPlants:AT3G46210.4 EnsemblPlants:AT3G46210.5
EnsemblPlants:AT3G46210.6 GeneID:823766 KEGG:ath:AT3G46210
TAIR:At3g46210 InParanoid:Q9LX74 PhylomeDB:Q9LX74
Genevestigator:Q9LX74 Uniprot:Q9LX74
Length = 239
Score = 863 (308.9 bits), Expect = 1.1e-101, Sum P(2) = 1.1e-101
Identities = 161/201 (80%), Positives = 180/201 (89%)
Query: 62 WVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSI 121
W GDTKVLAAVYGPKAGTKKNEN EKA EVIWKP++GQIGK EKEYE+ILKRT+QSI
Sbjct: 33 W-SQGDTKVLAAVYGPKAGTKKNENAEKACFEVIWKPKSGQIGKVEKEYEMILKRTIQSI 91
Query: 122 CILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYC 181
C+LT+NPNTTTSVIIQVVHDDG+LLPCAINAACAALVDAGIPMKHLAVAICCC AE+GY
Sbjct: 92 CVLTVNPNTTTSVIIQVVHDDGSLLPCAINAACAALVDAGIPMKHLAVAICCCLAENGYL 151
Query: 182 ILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFH 241
+LDP KLEE+KM FAYLVFPN+ LSVLPEGSS+ +GEP+EHGIITS+THG MSVDDYF
Sbjct: 152 VLDPNKLEEKKMTAFAYLVFPNTTLSVLPEGSSVAEGEPVEHGIITSITHGVMSVDDYFL 211
Query: 242 CLERGRAASAKLSDFLRRSLQ 262
C+E GRAA+A LS F R++ Q
Sbjct: 212 CVENGRAATASLSAFFRKNFQ 232
Score = 165 (63.1 bits), Expect = 1.1e-101, Sum P(2) = 1.1e-101
Identities = 30/36 (83%), Positives = 32/36 (88%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQG 36
ME+DR DGR PNQLRPLACS +ILHR HGSASWSQG
Sbjct: 1 MEIDREDGRTPNQLRPLACSRNILHRPHGSASWSQG 36
>UNIPROTKB|Q84T68 [details] [associations]
symbol:RRP46 "Exosome complex exonuclease RRP46 homolog"
species:39947 "Oryza sativa Japonica Group" [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003727
"single-stranded RNA binding" evidence=IDA] [GO:0004536
"deoxyribonuclease activity" evidence=IDA] [GO:0004540
"ribonuclease activity" evidence=IDA] [GO:0042802 "identical
protein binding" evidence=IPI] InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005730 GO:GO:0003727
EMBL:DP000009 EMBL:AP008209 GO:GO:0003690 GO:GO:0004527
GO:GO:0000178 GO:GO:0004540 InterPro:IPR020568 SUPFAM:SSF54211
GO:GO:0004536 GO:GO:0006364 eggNOG:COG0689 SUPFAM:SSF55666
KO:K12590 EMBL:AC120506 EMBL:AK069107 RefSeq:NP_001051936.1
UniGene:Os.47503 PDB:3HKM PDBsum:3HKM ProteinModelPortal:Q84T68
STRING:Q84T68 EnsemblPlants:LOC_Os03g63720.1 GeneID:4334824
KEGG:dosa:Os03t0854200-01 KEGG:osa:4334824 Gramene:Q84T68
OMA:EKACIEV ProtClustDB:CLSN2684812 EvolutionaryTrace:Q84T68
Uniprot:Q84T68
Length = 238
Score = 703 (252.5 bits), Expect = 9.4e-82, Sum P(2) = 9.4e-82
Identities = 138/208 (66%), Positives = 165/208 (79%)
Query: 62 WVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSI 121
W GDT VLAAVYGPK GT+K ENPEKASIEV+WKP TGQIGK EKEYE+ LKRTLQSI
Sbjct: 33 WA-QGDTIVLAAVYGPKPGTRKGENPEKASIEVVWKPMTGQIGKQEKEYEMTLKRTLQSI 91
Query: 122 CILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYC 181
C+LT++PNTTTSVI+QVV +DG+LLPCAINA CAALV AGIP+KHLAVAI C E G
Sbjct: 92 CLLTVHPNTTTSVILQVVGNDGSLLPCAINACCAALVFAGIPLKHLAVAIGCGVLEDGEV 151
Query: 182 ILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFH 241
ILD K EEQ++K FA+LVFPNS S + + + E E G+ITS+THG MS +DYF
Sbjct: 152 ILDTNKAEEQQLKSFAHLVFPNSRKSASSKEPNQKE-EDSERGLITSITHGVMSEEDYFS 210
Query: 242 CLERGRAASAKLSDFLRRSLQSKLPGDL 269
C+ERG AAS+++SDF+R +LQ + PGD+
Sbjct: 211 CIERGLAASSRISDFMRTTLQKQAPGDV 238
Score = 136 (52.9 bits), Expect = 9.4e-82, Sum P(2) = 9.4e-82
Identities = 25/36 (69%), Positives = 29/36 (80%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQG 36
ME RADGRNPNQLRP +C+ + L RAHGSA W+QG
Sbjct: 1 MEESRADGRNPNQLRPFSCTRNPLDRAHGSARWAQG 36
>UNIPROTKB|Q9NQT4 [details] [associations]
symbol:EXOSC5 "Exosome complex component RRP46"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000175 "3'-5'-exoribonuclease activity" evidence=NAS]
[GO:0006364 "rRNA processing" evidence=NAS] [GO:0005737 "cytoplasm"
evidence=NAS] [GO:0005730 "nucleolus" evidence=NAS] [GO:0000178
"exosome (RNase complex)" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=IMP;TAS] [GO:0045006 "DNA
deamination" evidence=IDA] [GO:0035327 "transcriptionally active
chromatin" evidence=IMP] [GO:0004532 "exoribonuclease activity"
evidence=IDA] [GO:0051607 "defense response to virus" evidence=IMP]
[GO:0000288 "nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 GO:GO:0005829 GO:GO:0005730 GO:GO:0051607
GO:GO:0003723 GO:GO:0000178 InterPro:IPR020568 SUPFAM:SSF54211
GO:GO:0035327 EMBL:AC011462 GO:GO:0006364 GO:GO:0000175
GO:GO:0043928 PDB:2NN6 PDBsum:2NN6 GO:GO:0045006 eggNOG:COG0689
HOGENOM:HOG000229515 Pfam:PF03725 SUPFAM:SSF55666 EMBL:AF281134
EMBL:AF285785 EMBL:BC007742 EMBL:BC107696 IPI:IPI00644775
RefSeq:NP_064543.3 UniGene:Hs.283741 ProteinModelPortal:Q9NQT4
SMR:Q9NQT4 DIP:DIP-29846N IntAct:Q9NQT4 MINT:MINT-1479651
STRING:Q9NQT4 PhosphoSite:Q9NQT4 DMDM:14285757 PaxDb:Q9NQT4
PRIDE:Q9NQT4 DNASU:56915 Ensembl:ENST00000221233 GeneID:56915
KEGG:hsa:56915 UCSC:uc002oqo.3 CTD:56915 GeneCards:GC19M041892
HGNC:HGNC:24662 MIM:606492 neXtProt:NX_Q9NQT4 PharmGKB:PA134890468
HOVERGEN:HBG051520 InParanoid:Q9NQT4 KO:K12590 OMA:VRETCEA
OrthoDB:EOG4PZJ7M PhylomeDB:Q9NQT4 EvolutionaryTrace:Q9NQT4
GenomeRNAi:56915 NextBio:62403 Bgee:Q9NQT4 CleanEx:HS_EXOSC5
Genevestigator:Q9NQT4 GermOnline:ENSG00000077348 Uniprot:Q9NQT4
Length = 235
Score = 286 (105.7 bits), Expect = 1.0e-34, Sum P(3) = 1.0e-34
Identities = 58/136 (42%), Positives = 85/136 (62%)
Query: 66 GDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILT 125
GDT VLA VYGP E KA++EVI +P+ G G EK E +++ T +++ + T
Sbjct: 50 GDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLPGVAEKSRERLIRNTCEAVVLGT 109
Query: 126 INPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDP 185
++P T+ +V++QVV D G+LL C +NAAC ALVDAG+PM+ L + C G +LDP
Sbjct: 110 LHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVPMRALFCGVACALDSDGTLVLDP 169
Query: 186 TKLEEQKMKGFAYLVF 201
T +E++ + A L F
Sbjct: 170 TSKQEKEAR--AVLTF 183
Score = 59 (25.8 bits), Expect = 1.0e-34, Sum P(3) = 1.0e-34
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 219 EPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSK 264
+ +E ++ S T G S + CL +AAS + F R SLQ +
Sbjct: 186 DSVERKLLMSSTKGLYSDTELQQCLAAAQAASQHVFRFYRESLQRR 231
Score = 57 (25.1 bits), Expect = 1.0e-34, Sum P(3) = 1.0e-34
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 9 RNPN-QLRPLACSCSILHRAHGSASWSQG 36
R P LR AC ++L R GSAS+ QG
Sbjct: 22 RGPGCSLRHFACEQNLLSRPDGSASFLQG 50
>UNIPROTKB|E1BAG2 [details] [associations]
symbol:EXOSC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0045006 "DNA deamination" evidence=IEA] [GO:0043928
"exonucleolytic nuclear-transcribed mRNA catabolic process involved
in deadenylation-dependent decay" evidence=IEA] [GO:0035327
"transcriptionally active chromatin" evidence=IEA] [GO:0000178
"exosome (RNase complex)" evidence=IEA] InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0051607 GO:GO:0000178
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0035327 GO:GO:0043928
GO:GO:0045006 Pfam:PF03725 SUPFAM:SSF55666 OMA:VRETCEA
GeneTree:ENSGT00550000075002 EMBL:DAAA02047109 IPI:IPI00710844
Ensembl:ENSBTAT00000021338 Uniprot:E1BAG2
Length = 235
Score = 282 (104.3 bits), Expect = 7.0e-34, Sum P(3) = 7.0e-34
Identities = 58/136 (42%), Positives = 85/136 (62%)
Query: 66 GDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILT 125
GDT VLA VYGP E KA++EVI +P+TG G EK E +++ T +++ +
Sbjct: 50 GDTSVLAGVYGPAEVKISKEIFNKATLEVILRPKTGLPGVAEKSRERLIRNTCEAVVLGA 109
Query: 126 INPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDP 185
++P T+ +V++QVV D G+LL C +NAAC ALVDAG+PM+ L + C G +LDP
Sbjct: 110 LHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVPMRALFCGVTCALDSDGTLMLDP 169
Query: 186 TKLEEQKMKGFAYLVF 201
T +E++ + A L F
Sbjct: 170 TAKQEKEAR--AVLTF 183
Score = 58 (25.5 bits), Expect = 7.0e-34, Sum P(3) = 7.0e-34
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 219 EPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSK 264
+ +E ++ S T G S + CL + AS + F R SLQ +
Sbjct: 186 DSVERKLLMSTTKGLYSDTELQQCLAAAQTASTHVFRFYRESLQRR 231
Score = 54 (24.1 bits), Expect = 7.0e-34, Sum P(3) = 7.0e-34
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 14 LRPLACSCSILHRAHGSASWSQG 36
LR AC ++L R GSAS+ QG
Sbjct: 28 LRHFACEQNLLSRPDGSASFLQG 50
>RGD|1307861 [details] [associations]
symbol:Exosc5 "exosome component 5" species:10116 "Rattus
norvegicus" [GO:0000178 "exosome (RNase complex)" evidence=IEA;ISO]
[GO:0006401 "RNA catabolic process" evidence=ISO] [GO:0035327
"transcriptionally active chromatin" evidence=IEA;ISO] [GO:0043928
"exonucleolytic nuclear-transcribed mRNA catabolic process involved
in deadenylation-dependent decay" evidence=IEA;ISO] [GO:0045006
"DNA deamination" evidence=IEA;ISO] [GO:0051607 "defense response
to virus" evidence=IEA;ISO] [GO:0004532 "exoribonuclease activity"
evidence=ISO] InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
RGD:1307861 GO:GO:0051607 GO:GO:0000178 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0035327 GO:GO:0043928 GO:GO:0045006
Pfam:PF03725 SUPFAM:SSF55666 CTD:56915 KO:K12590 OMA:VRETCEA
GeneTree:ENSGT00550000075002 IPI:IPI00201730 RefSeq:NP_001100963.2
UniGene:Rn.7400 Ensembl:ENSRNOT00000028026 GeneID:308441
KEGG:rno:308441 UCSC:RGD:1307861 NextBio:658885 ArrayExpress:F1LSX7
Uniprot:F1LSX7
Length = 235
Score = 279 (103.3 bits), Expect = 8.8e-34, Sum P(3) = 8.8e-34
Identities = 57/136 (41%), Positives = 84/136 (61%)
Query: 66 GDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILT 125
GDT VLA VYGP E KA++EVI +P+ G G EK E +++ T +++ +
Sbjct: 50 GDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLPGVAEKSRERLIRNTCEAVVLGA 109
Query: 126 INPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDP 185
++P T+ +V++QVV D G+LL C +NAAC ALVDAG+PM+ L + C G +LDP
Sbjct: 110 LHPRTSITVVLQVVSDTGSLLACCLNAACMALVDAGVPMRALFCGVTCALDPDGNLVLDP 169
Query: 186 TKLEEQKMKGFAYLVF 201
T +E++ + A L F
Sbjct: 170 TTKQEKEAR--AILTF 183
Score = 59 (25.8 bits), Expect = 8.8e-34, Sum P(3) = 8.8e-34
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 222 EHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSK 264
E ++ S T G S + CL +AAS + F R SLQ +
Sbjct: 189 EQKLLMSATKGLYSDAELQQCLAAAQAASQHIFRFYRESLQRR 231
Score = 55 (24.4 bits), Expect = 8.8e-34, Sum P(3) = 8.8e-34
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 9 RNPN-QLRPLACSCSILHRAHGSASWSQG 36
R+P LR AC ++L R GSAS+ QG
Sbjct: 22 RSPVCSLRHFACEQNLLSRPDGSASFLQG 50
>MGI|MGI:107889 [details] [associations]
symbol:Exosc5 "exosome component 5" species:10090 "Mus
musculus" [GO:0000178 "exosome (RNase complex)" evidence=ISO]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0006401 "RNA catabolic process" evidence=IMP]
[GO:0035327 "transcriptionally active chromatin" evidence=ISO]
[GO:0043928 "exonucleolytic nuclear-transcribed mRNA catabolic
process involved in deadenylation-dependent decay" evidence=ISO]
[GO:0045006 "DNA deamination" evidence=ISO] [GO:0051607 "defense
response to virus" evidence=ISO] InterPro:IPR001247
InterPro:IPR015847 MGI:MGI:107889 Pfam:PF01138 GO:GO:0005737
GO:GO:0005730 GO:GO:0051607 GO:GO:0003723 GO:GO:0006401
GO:GO:0000178 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0035327
GO:GO:0006364 GO:GO:0043928 GO:GO:0045006 eggNOG:COG0689
HOGENOM:HOG000229515 Pfam:PF03725 SUPFAM:SSF55666 CTD:56915
HOVERGEN:HBG051520 KO:K12590 OMA:VRETCEA OrthoDB:EOG4PZJ7M
EMBL:AK007372 EMBL:AK006475 EMBL:BC034358 IPI:IPI00133532
RefSeq:NP_613052.1 UniGene:Mm.207484 UniGene:Mm.27853
ProteinModelPortal:Q9CRA8 SMR:Q9CRA8 IntAct:Q9CRA8 STRING:Q9CRA8
PhosphoSite:Q9CRA8 PaxDb:Q9CRA8 PRIDE:Q9CRA8
Ensembl:ENSMUST00000079634 GeneID:27998 KEGG:mmu:27998
UCSC:uc009fti.2 GeneTree:ENSGT00550000075002 InParanoid:Q9CRA8
NextBio:306496 Bgee:Q9CRA8 CleanEx:MM_EXOSC5 Genevestigator:Q9CRA8
GermOnline:ENSMUSG00000061286 Uniprot:Q9CRA8
Length = 235
Score = 278 (102.9 bits), Expect = 1.1e-33, Sum P(3) = 1.1e-33
Identities = 57/136 (41%), Positives = 84/136 (61%)
Query: 66 GDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILT 125
GDT VLA VYGP E KA++EVI +P+ G G EK E +++ T +++ +
Sbjct: 50 GDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLPGVAEKSRERLVRNTCEAVVLGA 109
Query: 126 INPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDP 185
++P T+ +V++QVV D G+LL C +NAAC ALVDAG+PM+ L + C G +LDP
Sbjct: 110 LHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVPMRALFCGVTCALDSDGNLVLDP 169
Query: 186 TKLEEQKMKGFAYLVF 201
T +E++ + A L F
Sbjct: 170 TTKQEKEAR--AILTF 183
Score = 59 (25.8 bits), Expect = 1.1e-33, Sum P(3) = 1.1e-33
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 222 EHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSK 264
E ++ S T G S + CL +AAS + F R SLQ +
Sbjct: 189 EQKLLMSTTKGLYSDAELQQCLAAAQAASQHIFRFYRESLQRR 231
Score = 55 (24.4 bits), Expect = 1.1e-33, Sum P(3) = 1.1e-33
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 9 RNPN-QLRPLACSCSILHRAHGSASWSQG 36
R+P LR AC ++L R GSAS+ QG
Sbjct: 22 RSPVCSLRHFACEQNLLSRPDGSASFLQG 50
>ZFIN|ZDB-GENE-060503-675 [details] [associations]
symbol:exosc5 "exosome component 5" species:7955
"Danio rerio" [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
ZFIN:ZDB-GENE-060503-675 InterPro:IPR020568 SUPFAM:SSF54211
Pfam:PF03725 SUPFAM:SSF55666 GeneTree:ENSGT00550000075002
EMBL:BX649594 IPI:IPI00483802 Ensembl:ENSDART00000125931
ArrayExpress:F1REL3 Bgee:F1REL3 Uniprot:F1REL3
Length = 243
Score = 282 (104.3 bits), Expect = 5.1e-32, Sum P(3) = 5.1e-32
Identities = 58/155 (37%), Positives = 94/155 (60%)
Query: 66 GDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILT 125
GDT +LA VYGP E ++A++EV+ +P+ G E+ E ++ T ++ +LT
Sbjct: 57 GDTSILAGVYGPAEVKVSKEIYDRATVEVLIQPKMGLPSVRERAREQCVRETCEAALLLT 116
Query: 126 INPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDP 185
++P ++ +VI+QVVHDDG+LL C +NAAC AL+DAG+PM L ++ C ++ G I DP
Sbjct: 117 LHPRSSLTVILQVVHDDGSLLSCCLNAACMALMDAGLPMSRLFCSVTCAISKEGQIITDP 176
Query: 186 TKLEEQKMKGF-AYLVFPN--SILSVLPEGSSLVQ 217
T +E++ + + + N ++L GS VQ
Sbjct: 177 TARQEKESRALLTFAIDSNERNVLMSSTTGSFSVQ 211
Score = 57 (25.1 bits), Expect = 5.1e-32, Sum P(3) = 5.1e-32
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 222 EHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSK 264
E ++ S T G+ SV + C+ + AS ++ F R S++ +
Sbjct: 196 ERNVLMSSTTGSFSVQELQQCIAISQKASEQIFQFYRDSVKRR 238
Score = 37 (18.1 bits), Expect = 5.1e-32, Sum P(3) = 5.1e-32
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 14 LRPLACSCSILHRAHGSASWSQG 36
LR S+L R GS+++ QG
Sbjct: 35 LREYGSEQSLLSRPDGSSTFVQG 57
>TAIR|locus:2060111 [details] [associations]
symbol:AT2G07110 "AT2G07110" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] EMBL:CP002685 GenomeReviews:CT485783_GR EMBL:AC005693
IPI:IPI00528190 PIR:D84482 RefSeq:NP_178726.1 UniGene:At.52666
ProteinModelPortal:Q9ZV81 SMR:Q9ZV81 EnsemblPlants:AT2G07110.1
GeneID:815280 KEGG:ath:AT2G07110 TAIR:At2g07110 eggNOG:NOG280382
HOGENOM:HOG000095719 OMA:FIFSEDT PhylomeDB:Q9ZV81
ProtClustDB:CLSN2913059 ArrayExpress:Q9ZV81 Genevestigator:Q9ZV81
Uniprot:Q9ZV81
Length = 150
Score = 163 (62.4 bits), Expect = 3.0e-21, Sum P(2) = 3.0e-21
Identities = 32/44 (72%), Positives = 38/44 (86%)
Query: 102 QIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 145
++ K EKEYE ILKRTLQSIC+L + PNTTTSVIIQVVHD G++
Sbjct: 76 RLRKVEKEYETILKRTLQSICVLRVVPNTTTSVIIQVVHDGGSV 119
Score = 104 (41.7 bits), Expect = 3.0e-21, Sum P(2) = 3.0e-21
Identities = 21/32 (65%), Positives = 26/32 (81%)
Query: 62 WVGSGDTKVLAAVYGPKAGTKKNENPEKASIE 93
++ S DTKVL+A YGPKA TKKNEN EKA ++
Sbjct: 19 FIFSEDTKVLSAQYGPKARTKKNENAEKACLK 50
>TAIR|locus:2076710 [details] [associations]
symbol:RRP41 "AT3G61620" species:3702 "Arabidopsis
thaliana" [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0006396 "RNA processing"
evidence=IEA;ISS] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0005829
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0004527 EMBL:AL132959
InterPro:IPR020568 SUPFAM:SSF54211 KO:K11600 eggNOG:COG0689
HOGENOM:HOG000229515 OMA:DVFIEVL Pfam:PF03725 SUPFAM:SSF55666
HSSP:P50597 EMBL:AF191741 EMBL:BT005485 EMBL:AK118846
IPI:IPI00547870 PIR:T47954 RefSeq:NP_001118878.1 RefSeq:NP_191721.1
UniGene:At.20638 ProteinModelPortal:Q9SP08 SMR:Q9SP08 IntAct:Q9SP08
STRING:Q9SP08 PaxDb:Q9SP08 PRIDE:Q9SP08 DNASU:825335
EnsemblPlants:AT3G61620.1 EnsemblPlants:AT3G61620.2 GeneID:825335
KEGG:ath:AT3G61620 TAIR:At3g61620 InParanoid:Q9SP08
PhylomeDB:Q9SP08 ProtClustDB:CLSN2685258 ArrayExpress:Q9SP08
Genevestigator:Q9SP08 Uniprot:Q9SP08
Length = 241
Score = 169 (64.5 bits), Expect = 2.6e-15, Sum P(2) = 2.6e-15
Identities = 51/134 (38%), Positives = 76/134 (56%)
Query: 66 GDTKVLAAVYGP-----KAGTKKNENP----EKASIEVIWKPRTGQ-IGKPEKEYEIILK 115
G+TKV+AAVYGP K+ KKN++ E + + R Q + E ++++
Sbjct: 41 GNTKVIAAVYGPREIQNKSQQKKNDHAVVLCEYSMAQFSTGDRRRQKFDRRSTELSLVIR 100
Query: 116 RTLQSICILT-INPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
+T+++ CILT + P++ + +QV+ DG INAA AL DAGIPM+ LAV+ C
Sbjct: 101 QTMEA-CILTELMPHSQIDIFLQVLQADGGTRSACINAATLALADAGIPMRDLAVS---C 156
Query: 175 SAESGYCILDPTKL 188
SA GY L+ T L
Sbjct: 157 SA--GY--LNSTPL 166
Score = 59 (25.8 bits), Expect = 2.6e-15, Sum P(2) = 2.6e-15
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQG 36
R DGR N++R + ++ +A GSA + G
Sbjct: 10 RLDGRRFNEMRQIVAEVGVVSKADGSAVFEMG 41
>MGI|MGI:1923576 [details] [associations]
symbol:Exosc4 "exosome component 4" species:10090 "Mus
musculus" [GO:0000178 "exosome (RNase complex)" evidence=ISO]
[GO:0000460 "maturation of 5.8S rRNA" evidence=ISO] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=ISO]
[GO:0030307 "positive regulation of cell growth" evidence=ISO]
[GO:0035327 "transcriptionally active chromatin" evidence=ISO]
[GO:0045006 "DNA deamination" evidence=ISO] [GO:0051607 "defense
response to virus" evidence=ISO] [GO:0071028 "nuclear mRNA
surveillance" evidence=ISO] [GO:0071044 "histone mRNA catabolic
process" evidence=ISO] InterPro:IPR001247 InterPro:IPR015847
MGI:MGI:1923576 Pfam:PF01138 GO:GO:0005737 GO:GO:0030307
GO:GO:0005730 GO:GO:0051607 GO:GO:0017091 GO:GO:0000178
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0035327 GO:GO:0071044
KO:K11600 GO:GO:0000460 GO:GO:0045006 CTD:54512 eggNOG:COG0689
GeneTree:ENSGT00550000074804 HOGENOM:HOG000229515
HOVERGEN:HBG051519 OMA:DVFIEVL OrthoDB:EOG4PC9T0 GO:GO:0071028
Pfam:PF03725 SUPFAM:SSF55666 EMBL:BC012277 IPI:IPI00310857
RefSeq:NP_780608.1 UniGene:Mm.322752 ProteinModelPortal:Q921I9
SMR:Q921I9 STRING:Q921I9 PhosphoSite:Q921I9 PaxDb:Q921I9
PRIDE:Q921I9 Ensembl:ENSMUST00000059045 GeneID:109075
KEGG:mmu:109075 InParanoid:Q921I9 ChiTaRS:EXOSC4 NextBio:361620
Bgee:Q921I9 CleanEx:MM_EXOSC4 Genevestigator:Q921I9
GermOnline:ENSMUSG00000034259 Uniprot:Q921I9
Length = 245
Score = 167 (63.8 bits), Expect = 4.2e-14, Sum P(2) = 4.2e-14
Identities = 52/207 (25%), Positives = 93/207 (44%)
Query: 62 WVGSGDTKVLAAVYGPKA--GTKKNENPEKASIEVIWKPRTGQIGKPEK---------EY 110
++ G+TK LA VYGP G++ P++A + + T G+ ++ E
Sbjct: 40 YIEQGNTKALAVVYGPHEIRGSRSRALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEM 99
Query: 111 EIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVA 170
+ L++T ++ + ++P + + +QV+ DG +NAA A++DAGIPM+
Sbjct: 100 GLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNAATLAVMDAGIPMRDF--- 156
Query: 171 ICCCSAE--SGYCILDPTKLEEQKM-KGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIIT 227
+C CSA G + D + +EE A + P S L E S + + +E ++
Sbjct: 157 VCACSAGFVDGTALADLSHVEEAAGGPQLALALLPASGQIALLEMDSRLHEDHLEQ-VLE 215
Query: 228 SVTHGAMSVDDYFHCLERGRAASAKLS 254
+ A V + R A +S
Sbjct: 216 AAAQAARGVHTLLDLVVRQHVQEASVS 242
Score = 54 (24.1 bits), Expect = 4.2e-14, Sum P(2) = 4.2e-14
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQG 36
R DGR +LR + + +A GSA QG
Sbjct: 13 RIDGRRAGELRKIQARMGVFAQADGSAYIEQG 44
>FB|FBgn0037815 [details] [associations]
symbol:Rrp46 "Rrp46" species:7227 "Drosophila melanogaster"
[GO:0006397 "mRNA processing" evidence=ISS] [GO:0000176 "nuclear
exosome (RNase complex)" evidence=ISS;IDA] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISS] [GO:0000177
"cytoplasmic exosome (RNase complex)" evidence=ISS] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0010468 "regulation of gene
expression" evidence=IMP] InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 GO:GO:0005737 GO:GO:0010468 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0000176 eggNOG:COG0689 SUPFAM:SSF55666
EMBL:AY058481 ProteinModelPortal:Q95TW1 SMR:Q95TW1 STRING:Q95TW1
PaxDb:Q95TW1 PRIDE:Q95TW1 FlyBase:FBgn0037815 InParanoid:Q95TW1
OrthoDB:EOG4BRV2M ArrayExpress:Q95TW1 Bgee:Q95TW1 Uniprot:Q95TW1
Length = 233
Score = 164 (62.8 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 42/162 (25%), Positives = 79/162 (48%)
Query: 55 SKCYFCYWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIIL 114
S+C G T ++ AV GP +N + + + +E ++P+ G ++ E +
Sbjct: 25 SRCDGSVMYSQGATGLIGAVLGPIEVKTQNLSIDGSYLECNYRPKAGLPQVTDRIREAAI 84
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
+ L+ + +P + SV IQ + D G++ CA+N AC A++ G+P+K+ A+
Sbjct: 85 RDVLELALLSEAHPRSKMSVQIQELEDRGSIDACAVNCACLAMLIGGLPLKYSFAAVHAI 144
Query: 175 SAESGYCILDPTKLEEQKMKG---FAYLVFPNSILSVLPEGS 213
E G +LDP + E + FA+ ++L + +GS
Sbjct: 145 INEQGEYVLDPDQSETLHQRASFTFAFDSVEGNLLLIQTKGS 186
Score = 48 (22.0 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 12 NQLRPLACSCSILHRAHGSASWSQG 36
++LR + C + L R GS +SQG
Sbjct: 12 DKLRQMHCEFNPLSRCDGSVMYSQG 36
>WB|WBGene00007201 [details] [associations]
symbol:exos-4.1 species:6239 "Caenorhabditis elegans"
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0008406 "gonad
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040018 "positive regulation of multicellular
organism growth" evidence=IMP] InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0009792 GO:GO:0005737
GO:GO:0040007 GO:GO:0040010 GO:GO:0005730 GO:GO:0008406
GO:GO:0002119 GO:GO:0010171 GO:GO:0040018 GO:GO:0003723
GO:GO:0000178 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0006364
eggNOG:COG0689 GeneTree:ENSGT00550000074804 HOGENOM:HOG000229515
OMA:DVFIEVL Pfam:PF03725 SUPFAM:SSF55666 EMBL:Z73422 PIR:B88880
RefSeq:NP_001021274.1 ProteinModelPortal:Q17533 SMR:Q17533
STRING:Q17533 PaxDb:Q17533 PRIDE:Q17533 EnsemblMetazoa:B0564.1a
GeneID:13198805 KEGG:cel:CELE_B0564.1a CTD:13198805
WormBase:B0564.1a InParanoid:Q17533 NextBio:900408
ArrayExpress:Q17533 InterPro:IPR018336 PROSITE:PS01277
Uniprot:Q17533
Length = 240
Score = 165 (63.1 bits), Expect = 2.5e-13, Sum P(2) = 2.5e-13
Identities = 46/140 (32%), Positives = 66/140 (47%)
Query: 60 CYWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKP-------RTGQIGKPEKEYEI 112
CY + G+TKVL AVYGP G +K +I + R + K EI
Sbjct: 36 CY-LEHGNTKVLCAVYGPYEGKSSKRIEDKCAIVCQYSATKFSGLERKNRTRGDRKSTEI 94
Query: 113 --ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVA 170
+L++ +S+ + P + + +V+ DG+ L +NA AL DAGIPMK +A A
Sbjct: 95 SRLLEKAFESVILTEAFPRSQLDIFCEVIQGDGSNLAACVNATSLALADAGIPMKGIASA 154
Query: 171 ICCCSAESGYCILDPTKLEE 190
C G I+D T EE
Sbjct: 155 -ATCGVVDGKPIVDLTSREE 173
Score = 48 (22.0 bits), Expect = 2.5e-13, Sum P(2) = 2.5e-13
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQG 36
R DGR P Q+R + + A GS G
Sbjct: 10 RIDGRRPAQIRNINTRLGLNRNAEGSCYLEHG 41
>UNIPROTKB|Q17533 [details] [associations]
symbol:exos-4.1 "Putative exosome complex component RRP41"
species:6239 "Caenorhabditis elegans" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0009792 GO:GO:0005737 GO:GO:0040007 GO:GO:0040010
GO:GO:0005730 GO:GO:0008406 GO:GO:0002119 GO:GO:0010171
GO:GO:0040018 GO:GO:0003723 GO:GO:0000178 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0006364 eggNOG:COG0689
GeneTree:ENSGT00550000074804 HOGENOM:HOG000229515 OMA:DVFIEVL
Pfam:PF03725 SUPFAM:SSF55666 EMBL:Z73422 PIR:B88880
RefSeq:NP_001021274.1 ProteinModelPortal:Q17533 SMR:Q17533
STRING:Q17533 PaxDb:Q17533 PRIDE:Q17533 EnsemblMetazoa:B0564.1a
GeneID:13198805 KEGG:cel:CELE_B0564.1a CTD:13198805
WormBase:B0564.1a InParanoid:Q17533 NextBio:900408
ArrayExpress:Q17533 InterPro:IPR018336 PROSITE:PS01277
Uniprot:Q17533
Length = 240
Score = 165 (63.1 bits), Expect = 2.5e-13, Sum P(2) = 2.5e-13
Identities = 46/140 (32%), Positives = 66/140 (47%)
Query: 60 CYWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKP-------RTGQIGKPEKEYEI 112
CY + G+TKVL AVYGP G +K +I + R + K EI
Sbjct: 36 CY-LEHGNTKVLCAVYGPYEGKSSKRIEDKCAIVCQYSATKFSGLERKNRTRGDRKSTEI 94
Query: 113 --ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVA 170
+L++ +S+ + P + + +V+ DG+ L +NA AL DAGIPMK +A A
Sbjct: 95 SRLLEKAFESVILTEAFPRSQLDIFCEVIQGDGSNLAACVNATSLALADAGIPMKGIASA 154
Query: 171 ICCCSAESGYCILDPTKLEE 190
C G I+D T EE
Sbjct: 155 -ATCGVVDGKPIVDLTSREE 173
Score = 48 (22.0 bits), Expect = 2.5e-13, Sum P(2) = 2.5e-13
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQG 36
R DGR P Q+R + + A GS G
Sbjct: 10 RIDGRRPAQIRNINTRLGLNRNAEGSCYLEHG 41
>RGD|1310986 [details] [associations]
symbol:Exosc4 "exosome component 4" species:10116 "Rattus
norvegicus" [GO:0000178 "exosome (RNase complex)" evidence=IEA;ISO]
[GO:0000460 "maturation of 5.8S rRNA" evidence=IEA;ISO] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=ISO]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0017091 "AU-rich element binding"
evidence=IEA;ISO] [GO:0030307 "positive regulation of cell growth"
evidence=IEA;ISO] [GO:0035327 "transcriptionally active chromatin"
evidence=IEA;ISO] [GO:0045006 "DNA deamination" evidence=IEA;ISO]
[GO:0051607 "defense response to virus" evidence=IEA;ISO]
[GO:0071028 "nuclear mRNA surveillance" evidence=IEA;ISO]
[GO:0071044 "histone mRNA catabolic process" evidence=IEA;ISO]
[GO:0004532 "exoribonuclease activity" evidence=ISO]
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 RGD:1310986
GO:GO:0005634 GO:GO:0030307 GO:GO:0051607 GO:GO:0017091
GO:GO:0000178 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0035327
GO:GO:0071044 KO:K11600 GO:GO:0000460 GO:GO:0045006 CTD:54512
GeneTree:ENSGT00550000074804 OrthoDB:EOG4PC9T0 GO:GO:0071028
Pfam:PF03725 SUPFAM:SSF55666 IPI:IPI00366418 RefSeq:NP_001128332.1
UniGene:Rn.28481 PRIDE:D4A4Y0 Ensembl:ENSRNOT00000016464
GeneID:300045 KEGG:rno:300045 UCSC:RGD:1310986 NextBio:646189
Uniprot:D4A4Y0
Length = 245
Score = 162 (62.1 bits), Expect = 3.5e-13, Sum P(2) = 3.5e-13
Identities = 49/189 (25%), Positives = 88/189 (46%)
Query: 62 WVGSGDTKVLAAVYGPKA--GTKKNENPEKASIEVIWKPRTGQIGKPEK---------EY 110
++ G+TK LA VYGP G++ P++A + + T G+ ++ E
Sbjct: 40 YIEQGNTKALAVVYGPHEIRGSRSRALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEM 99
Query: 111 EIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVA 170
+ L++T ++ + ++P + + +QV+ DG +NAA A++DAGIPM+
Sbjct: 100 GLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNAATLAVMDAGIPMRDF--- 156
Query: 171 ICCCSAE--SGYCILDPTKLEEQKM-KGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIIT 227
+C CSA G + D + +EE A + P S L E S + + +E ++
Sbjct: 157 VCACSAGFVDGTALADLSHVEEAAGGPQLALALLPASGQIALLEMDSRLHEDHLEQ-VLE 215
Query: 228 SVTHGAMSV 236
+ A V
Sbjct: 216 AAAQAARDV 224
Score = 54 (24.1 bits), Expect = 3.5e-13, Sum P(2) = 3.5e-13
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQG 36
R DGR +LR + + +A GSA QG
Sbjct: 13 RIDGRRAGELRKIQARMGVFAQADGSAYIEQG 44
>UNIPROTKB|Q9NPD3 [details] [associations]
symbol:EXOSC4 "Exosome complex component RRP41"
species:9606 "Homo sapiens" [GO:0000175 "3'-5'-exoribonuclease
activity" evidence=NAS] [GO:0005730 "nucleolus" evidence=NAS]
[GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0006364 "rRNA
processing" evidence=NAS] [GO:0071044 "histone mRNA catabolic
process" evidence=IMP] [GO:0000178 "exosome (RNase complex)"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000460 "maturation of 5.8S rRNA" evidence=IMP] [GO:0045006
"DNA deamination" evidence=IDA] [GO:0017091 "AU-rich element
binding" evidence=IDA] [GO:0035327 "transcriptionally active
chromatin" evidence=IMP] [GO:0004532 "exoribonuclease activity"
evidence=IDA] [GO:0000956 "nuclear-transcribed mRNA catabolic
process" evidence=IMP] [GO:0071028 "nuclear mRNA surveillance"
evidence=IMP] [GO:0030307 "positive regulation of cell growth"
evidence=IMP] [GO:0005634 "nucleus" evidence=IDA] [GO:0051607
"defense response to virus" evidence=IMP] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=TAS] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 GO:GO:0005829 GO:GO:0030307 GO:GO:0005730
GO:GO:0051607 GO:GO:0017091 GO:GO:0000178 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0035327 GO:GO:0071044 KO:K11600 GO:GO:0000460
GO:GO:0000175 GO:GO:0043928 PDB:2NN6 PDBsum:2NN6 GO:GO:0045006
CTD:54512 eggNOG:COG0689 HOGENOM:HOG000229515 HOVERGEN:HBG051519
OMA:DVFIEVL OrthoDB:EOG4PC9T0 GO:GO:0071028 Pfam:PF03725
SUPFAM:SSF55666 EMBL:AF281133 EMBL:AK000598 EMBL:AC109322
EMBL:BC002777 IPI:IPI00745613 RefSeq:NP_061910.1 UniGene:Hs.632041
ProteinModelPortal:Q9NPD3 SMR:Q9NPD3 IntAct:Q9NPD3 STRING:Q9NPD3
PhosphoSite:Q9NPD3 DMDM:14285756 SWISS-2DPAGE:Q9NPD3 PaxDb:Q9NPD3
PRIDE:Q9NPD3 DNASU:54512 Ensembl:ENST00000316052
Ensembl:ENST00000568113 GeneID:54512 KEGG:hsa:54512 UCSC:uc003zau.3
GeneCards:GC08P145133 HGNC:HGNC:18189 HPA:HPA024792 MIM:606491
neXtProt:NX_Q9NPD3 PharmGKB:PA134867931 InParanoid:Q9NPD3
PhylomeDB:Q9NPD3 EvolutionaryTrace:Q9NPD3 GenomeRNAi:54512
NextBio:56896 ArrayExpress:Q9NPD3 Bgee:Q9NPD3 CleanEx:HS_EXOSC4
Genevestigator:Q9NPD3 GermOnline:ENSG00000178896 Uniprot:Q9NPD3
Length = 245
Score = 161 (61.7 bits), Expect = 3.9e-13, Sum P(2) = 3.9e-13
Identities = 54/210 (25%), Positives = 95/210 (45%)
Query: 62 WVGSGDTKVLAAVYGPKA--GTKKNENPEKASIEVIWKPRTGQIGKPEK---------EY 110
++ G+TK LA VYGP G++ P++A + + T G+ ++ E
Sbjct: 40 YIEQGNTKALAVVYGPHEIRGSRARALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEM 99
Query: 111 EIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVA 170
+ L++T ++ + ++P + + +QV+ DG +NAA A++DAGIPM+
Sbjct: 100 GLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDF--- 156
Query: 171 ICCCSAE--SGYCILDPTKLEEQKM-KGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIIT 227
+C CSA G + D + +EE A + P S L E + + + +E ++
Sbjct: 157 VCACSAGFVDGTALADLSHVEEAAGGPQLALALLPASGQIALLEMDARLHEDHLER-VLE 215
Query: 228 SVTHGAMSVDDYFHCLERG--RAASAKLSD 255
+ A V + R R AS L D
Sbjct: 216 AAAQAARDVHTLLDRVVRQHVREASILLGD 245
Score = 55 (24.4 bits), Expect = 3.9e-13, Sum P(2) = 3.9e-13
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQG 36
R DGR +LR + + +A GSA QG
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQG 44
>UNIPROTKB|Q7YRA3 [details] [associations]
symbol:EXOSC4 "Exosome complex component RRP41"
species:9913 "Bos taurus" [GO:0000178 "exosome (RNase complex)"
evidence=ISS] [GO:0071044 "histone mRNA catabolic process"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0071028 "nuclear mRNA surveillance"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0045006 "DNA deamination" evidence=IEA] [GO:0035327
"transcriptionally active chromatin" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0000460 "maturation of
5.8S rRNA" evidence=IEA] [GO:0004527 "exonuclease activity"
evidence=IEA] InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005737 GO:GO:0030307 GO:GO:0005730 GO:GO:0051607
GO:GO:0017091 GO:GO:0004527 GO:GO:0090305 GO:GO:0000178
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0035327 GO:GO:0071044
KO:K11600 GO:GO:0000460 GO:GO:0045006 EMBL:AJ518955 EMBL:BC109819
IPI:IPI00697313 RefSeq:NP_001071554.1 UniGene:Bt.16597 HSSP:Q9UXC2
ProteinModelPortal:Q7YRA3 SMR:Q7YRA3 STRING:Q7YRA3
Ensembl:ENSBTAT00000019451 GeneID:618292 KEGG:bta:618292 CTD:54512
eggNOG:COG0689 GeneTree:ENSGT00550000074804 HOGENOM:HOG000229515
HOVERGEN:HBG051519 InParanoid:Q7YRA3 OMA:DVFIEVL OrthoDB:EOG4PC9T0
NextBio:20901104 GO:GO:0071028 Pfam:PF03725 SUPFAM:SSF55666
Uniprot:Q7YRA3
Length = 245
Score = 160 (61.4 bits), Expect = 6.1e-13, Sum P(2) = 6.1e-13
Identities = 40/142 (28%), Positives = 72/142 (50%)
Query: 62 WVGSGDTKVLAAVYGPKA--GTKKNENPEKASIEVIWKPRTGQIGKPEK---------EY 110
++ G+TK LA VYGP G++ P++A + + T G+ ++ E
Sbjct: 40 YIEQGNTKALAVVYGPHEIRGSRARALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEM 99
Query: 111 EIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVA 170
+ L++T ++ + ++P + + +QV+ DG +NAA A++DAGIPM+
Sbjct: 100 GLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDF--- 156
Query: 171 ICCCSAE--SGYCILDPTKLEE 190
+C CSA G + D + +EE
Sbjct: 157 VCACSAGFVDGTALADLSHVEE 178
Score = 55 (24.4 bits), Expect = 6.1e-13, Sum P(2) = 6.1e-13
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQG 36
R DGR +LR + + +A GSA QG
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQG 44
>FB|FBgn0032487 [details] [associations]
symbol:Ski6 "Ski6" species:7227 "Drosophila melanogaster"
[GO:0000176 "nuclear exosome (RNase complex)" evidence=ISS;IDA]
[GO:0000175 "3'-5'-exoribonuclease activity" evidence=ISS]
[GO:0000177 "cytoplasmic exosome (RNase complex)" evidence=ISS]
[GO:0035327 "transcriptionally active chromatin" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005652 "nuclear lamina"
evidence=IDA] [GO:0010468 "regulation of gene expression"
evidence=IMP] InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005737 GO:GO:0010468 InterPro:IPR020568 SUPFAM:SSF54211
GO:GO:0035327 GO:GO:0005652 GO:GO:0000176 eggNOG:COG0689
SUPFAM:SSF55666 EMBL:AY071632 ProteinModelPortal:Q8SYC8 SMR:Q8SYC8
IntAct:Q8SYC8 STRING:Q8SYC8 PaxDb:Q8SYC8 PRIDE:Q8SYC8
FlyBase:FBgn0032487 InParanoid:Q8SYC8 OrthoDB:EOG4Z08NJ
ArrayExpress:Q8SYC8 Bgee:Q8SYC8 Uniprot:Q8SYC8
Length = 246
Score = 148 (57.2 bits), Expect = 9.7e-13, Sum P(2) = 9.7e-13
Identities = 39/135 (28%), Positives = 70/135 (51%)
Query: 62 WVGSGDTKVLAAVYGP-KAGTKKNENP-----EKASIEVIWKPRTGQIGKPEKEYEIILK 115
++ G+TKVLAAVYGP +A + E+ +A+ + + + E+++ L+
Sbjct: 41 YMEQGNTKVLAAVYGPHQAKGNQTESVINCQYSQATFSTAERKNRPRGDRKSLEFKLYLQ 100
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
+ L + + P + + ++V+ DDGA A+NAA AL+DAGI + VA
Sbjct: 101 QALSAAIKSELYPRSQIDIYVEVLQDDGANYAVALNAATLALIDAGICLNEFIVACTASL 160
Query: 176 AESGYCILDPTKLEE 190
++S + D ++ EE
Sbjct: 161 SKSNIPLTDISQFEE 175
Score = 71 (30.1 bits), Expect = 9.7e-13, Sum P(2) = 9.7e-13
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQG 36
R DGR P++LR + C + + GSA QG
Sbjct: 14 RLDGRRPHELRRIKCKLGVFEQPDGSAYMEQG 45
>UNIPROTKB|E2RIM3 [details] [associations]
symbol:EXOSC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071044 "histone mRNA catabolic process"
evidence=IEA] [GO:0071028 "nuclear mRNA surveillance" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0045006
"DNA deamination" evidence=IEA] [GO:0035327 "transcriptionally
active chromatin" evidence=IEA] [GO:0030307 "positive regulation of
cell growth" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000460
"maturation of 5.8S rRNA" evidence=IEA] [GO:0000178 "exosome (RNase
complex)" evidence=IEA] InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 GO:GO:0005634 GO:GO:0030307 GO:GO:0051607
GO:GO:0017091 GO:GO:0000178 InterPro:IPR020568 SUPFAM:SSF54211
GO:GO:0035327 GO:GO:0071044 KO:K11600 GO:GO:0000460 GO:GO:0045006
CTD:54512 GeneTree:ENSGT00550000074804 OMA:DVFIEVL GO:GO:0071028
Pfam:PF03725 SUPFAM:SSF55666 EMBL:AAEX03008955 RefSeq:XP_539207.1
Ensembl:ENSCAFT00000002371 GeneID:482086 KEGG:cfa:482086
NextBio:20856762 Uniprot:E2RIM3
Length = 245
Score = 155 (59.6 bits), Expect = 3.6e-12, Sum P(2) = 3.6e-12
Identities = 40/140 (28%), Positives = 72/140 (51%)
Query: 62 WVGSGDTKVLAAVYGPKA--GTKKNENPEKASIEVIWKPRTGQIGKPEK---------EY 110
++ G+TK LA VYGP G++ P++A + + T G+ ++ E
Sbjct: 40 YIEQGNTKALAVVYGPHEIRGSRARALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEM 99
Query: 111 EIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVA 170
+ L++T ++ + ++P + + +QV+ DG +NAA A++DAGIPM+
Sbjct: 100 GLHLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDF--- 156
Query: 171 ICCCSAESGYCILDPTKLEE 190
+C CSA G+ +D T L +
Sbjct: 157 VCACSA--GF--VDNTALAD 172
Score = 55 (24.4 bits), Expect = 3.6e-12, Sum P(2) = 3.6e-12
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQG 36
R DGR +LR + + +A GSA QG
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQG 44
>UNIPROTKB|F1RSL0 [details] [associations]
symbol:EXOSC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071044 "histone mRNA catabolic process" evidence=IEA]
[GO:0071028 "nuclear mRNA surveillance" evidence=IEA] [GO:0051607
"defense response to virus" evidence=IEA] [GO:0045006 "DNA
deamination" evidence=IEA] [GO:0035327 "transcriptionally active
chromatin" evidence=IEA] [GO:0030307 "positive regulation of cell
growth" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000460
"maturation of 5.8S rRNA" evidence=IEA] [GO:0000178 "exosome (RNase
complex)" evidence=IEA] InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 GO:GO:0005634 GO:GO:0030307 GO:GO:0051607
GO:GO:0017091 GO:GO:0000178 InterPro:IPR020568 SUPFAM:SSF54211
GO:GO:0035327 GO:GO:0071044 KO:K11600 GO:GO:0000460 GO:GO:0045006
GeneTree:ENSGT00550000074804 OMA:DVFIEVL GO:GO:0071028 Pfam:PF03725
SUPFAM:SSF55666 EMBL:FP085471 RefSeq:XP_003125499.1
UniGene:Ssc.8432 Ensembl:ENSSSCT00000006505 GeneID:100511875
KEGG:ssc:100511875 Uniprot:F1RSL0
Length = 245
Score = 155 (59.6 bits), Expect = 3.6e-12, Sum P(2) = 3.6e-12
Identities = 38/142 (26%), Positives = 71/142 (50%)
Query: 62 WVGSGDTKVLAAVYGPKA--GTKKNENPEKASIEVIWKPRTGQIGKPEK---------EY 110
++ G+TK LA VYGP G++ P++A + + T G+ ++ E
Sbjct: 40 YIEQGNTKALAVVYGPHEIRGSRSRALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEM 99
Query: 111 EIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVA 170
+ L++ ++ + ++P + + +QV+ DG + +N A A++DAGIPM+
Sbjct: 100 GLQLRQAFEAAILTQLHPRSQIDIYVQVLQADGGIYAACVNVATLAVLDAGIPMRDF--- 156
Query: 171 ICCCSAE--SGYCILDPTKLEE 190
+C CSA G + D + +EE
Sbjct: 157 VCACSAGFVDGTALADLSHVEE 178
Score = 55 (24.4 bits), Expect = 3.6e-12, Sum P(2) = 3.6e-12
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQG 36
R DGR +LR + + +A GSA QG
Sbjct: 13 RVDGRRARELRKIQARMGVFAQADGSAYIEQG 44
>UNIPROTKB|F1RH84 [details] [associations]
symbol:EXOSC5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0045006 "DNA deamination" evidence=IEA] [GO:0043928
"exonucleolytic nuclear-transcribed mRNA catabolic process involved
in deadenylation-dependent decay" evidence=IEA] [GO:0035327
"transcriptionally active chromatin" evidence=IEA] [GO:0000178
"exosome (RNase complex)" evidence=IEA] InterPro:IPR015847
GO:GO:0051607 GO:GO:0000178 GO:GO:0035327 GO:GO:0043928
GO:GO:0045006 Pfam:PF03725 SUPFAM:SSF55666
GeneTree:ENSGT00550000075002 EMBL:FP700139
Ensembl:ENSSSCT00000003348 Uniprot:F1RH84
Length = 109
Score = 125 (49.1 bits), Expect = 9.9e-12, Sum P(2) = 9.9e-12
Identities = 26/57 (45%), Positives = 35/57 (61%)
Query: 145 LLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVF 201
LL C +NAAC ALVDAG+PM+ L + C G +LDPT +E++ + A L F
Sbjct: 3 LLACCLNAACMALVDAGVPMRALFCGVTCALDSDGTFMLDPTAKQEKEAR--AVLTF 57
Score = 56 (24.8 bits), Expect = 9.9e-12, Sum P(2) = 9.9e-12
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 219 EPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSK 264
+ +E ++ S T G S + CL + AS + F R SLQ +
Sbjct: 60 DSVERKLLMSTTKGLYSDAELQQCLAAAQTASQHVFRFYRESLQRR 105
>UNIPROTKB|Q28F19 [details] [associations]
symbol:exosc6 "Exosome complex component MTR3" species:8364
"Xenopus (Silurana) tropicalis" [GO:0000178 "exosome (RNase
complex)" evidence=ISS] InterPro:IPR001247 Pfam:PF01138
GO:GO:0005737 GO:GO:0005730 GO:GO:0003723 GO:GO:0000178
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0006364 eggNOG:COG0689
GeneTree:ENSGT00550000074804 HOGENOM:HOG000229515
HOVERGEN:HBG057826 KO:K12587 OrthoDB:EOG4D7Z6K EMBL:CR762221
EMBL:BC136080 RefSeq:NP_001017016.1 UniGene:Str.4704
ProteinModelPortal:Q28F19 SMR:Q28F19 STRING:Q28F19
Ensembl:ENSXETT00000016677 GeneID:549770 KEGG:xtr:549770 CTD:5916
Xenbase:XB-GENE-998313 OMA:LANCHSS Bgee:Q28F19 Uniprot:Q28F19
Length = 270
Score = 155 (59.6 bits), Expect = 2.7e-11, Sum P(2) = 2.7e-11
Identities = 53/168 (31%), Positives = 78/168 (46%)
Query: 64 GSGDTKVLAAVYGPKA---GTKKNENPEKASIEVIWKP--RTGQ------IGKPEKEYEI 112
GSG TKVL AV+GP+ G ++ E + ++ W P R G G ++ +
Sbjct: 62 GSGGTKVLCAVHGPRERGMGGERAETRGRLLCDLRWAPFSRRGPWSGSCPAGPSPRQAGL 121
Query: 113 ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAIC 172
L+ +L+ L P V + V+ D G+ LP A++ A AL DAGI M LA+
Sbjct: 122 QLQESLEPAVRLDRYPRAEVIVWVLVLEDRGSALPAAVSCASLALADAGIEMFDLALGCG 181
Query: 173 CCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQ-GE 219
G +LDP EE+ G + S+L L + S L+ GE
Sbjct: 182 LSRGPGGELLLDPDDDEEEAGSGGTMSL---SLLPTLNQVSGLISSGE 226
Score = 51 (23.0 bits), Expect = 2.7e-11, Sum P(2) = 2.7e-11
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 8 GRNPNQLRPLACSCSILHRAHGSASWSQG 36
GR P++ RP+ +L +A GSA G
Sbjct: 34 GRGPSEPRPVFVRAGLLSQAKGSAYLEAG 62
>POMBASE|SPBC115.01c [details] [associations]
symbol:rrp46 "exosome subunit Rrp46 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISO] [GO:0000176 "nuclear
exosome (RNase complex)" evidence=ISO] [GO:0000177 "cytoplasmic
exosome (RNase complex)" evidence=ISO] [GO:0000467 "exonucleolytic
trimming to generate mature 3'-end of 5.8S rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISO]
[GO:0003723 "RNA binding" evidence=ISM] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005829
"cytosol" evidence=IDA] [GO:0034661 "ncRNA catabolic process"
evidence=ISO] [GO:0070478 "nuclear-transcribed mRNA catabolic
process, 3'-5' exonucleolytic nonsense-mediated decay"
evidence=ISO] [GO:0070481 "nuclear-transcribed mRNA catabolic
process, non-stop decay" evidence=ISO] [GO:0070651 "nonfunctional
rRNA decay" evidence=ISO] [GO:0071035 "nuclear
polyadenylation-dependent rRNA catabolic process" evidence=ISO]
[GO:0071038 "nuclear polyadenylation-dependent tRNA catabolic
process" evidence=ISO] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=ISO]
InterPro:IPR001247 PomBase:SPBC115.01c Pfam:PF01138 GO:GO:0005829
GO:GO:0005730 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
GO:GO:0071035 GO:GO:0071038 InterPro:IPR020568 SUPFAM:SSF54211
GO:GO:0000176 GO:GO:0000175 GO:GO:0000177 GO:GO:0000467
GO:GO:0070651 GO:GO:0071042 GO:GO:0070478 GO:GO:0070481
eggNOG:COG0689 KO:K12590 PIR:T39298 RefSeq:NP_595260.1
ProteinModelPortal:O42894 STRING:O42894 EnsemblFungi:SPBC115.01c.1
GeneID:2539660 KEGG:spo:SPBC115.01c OMA:YPRQLIQ OrthoDB:EOG4HDX3Z
NextBio:20800814 Uniprot:O42894
Length = 226
Score = 147 (56.8 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 37/109 (33%), Positives = 55/109 (50%)
Query: 66 GDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILT 125
G +V+ V GP ++E KA++EV+ +P +G EK + L+ L
Sbjct: 19 GSARVICGVNGPIDVKIRDERLNKATVEVLVQPVSGVAETLEKMISSRIVGILEDAIFLN 78
Query: 126 INPNTTTSVIIQVVHDDGA-LLPCAINAACAALVDAGIPMKHLAVAICC 173
P T V IQ++ +DG L IN A AL+DAGI +K++ AI C
Sbjct: 79 TYPRTLIQVSIQIIEEDGTDTLAAVINGAVLALLDAGISLKYIPCAINC 127
Score = 45 (20.9 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 23 ILHRAHGSASWSQG 36
IL R+ GS+ W QG
Sbjct: 6 ILSRSDGSSEWKQG 19
>ZFIN|ZDB-GENE-040426-1702 [details] [associations]
symbol:exosc4 "exosome component 4" species:7955
"Danio rerio" [GO:0004527 "exonuclease activity" evidence=IEA]
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
ZFIN:ZDB-GENE-040426-1702 GO:GO:0004527 InterPro:IPR020568
SUPFAM:SSF54211 KO:K11600 CTD:54512 HOGENOM:HOG000229515
HOVERGEN:HBG051519 Pfam:PF03725 SUPFAM:SSF55666 EMBL:BC059525
EMBL:BC153617 EMBL:AY576990 IPI:IPI00485513 RefSeq:NP_957033.1
UniGene:Dr.107456 SMR:Q6PBZ8 DNASU:393712 GeneID:393712
KEGG:dre:393712 InParanoid:Q6PBZ8 NextBio:20814714 Uniprot:Q6PBZ8
Length = 245
Score = 139 (54.0 bits), Expect = 3.8e-10, Sum P(2) = 3.8e-10
Identities = 36/126 (28%), Positives = 62/126 (49%)
Query: 62 WVGSGDTKVLAAVYGPKA--GTKKNENPEKASIEVIWKPRTGQIGKPEK---------EY 110
++ G+TK LA VYGP G++ ++A I + T + ++ E
Sbjct: 40 YLEQGNTKALAVVYGPHEIRGSRSKSLHDRAIINCQYSMATFSTAERKRRPHGDRKSSEM 99
Query: 111 EIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVA 170
+ LK+T ++ + + P + + ++++ DG +NAA ALVDAGIPM+
Sbjct: 100 SLHLKQTFEAAVLTELYPRSQIDIYVKILQADGGNYSACVNAATLALVDAGIPMRDY--- 156
Query: 171 ICCCSA 176
+C CSA
Sbjct: 157 VCACSA 162
Score = 58 (25.5 bits), Expect = 3.8e-10, Sum P(2) = 3.8e-10
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQG 36
R DGR +LR + S+ +A GSA QG
Sbjct: 13 RLDGRKATELRKVQARMSVFAQADGSAYLEQG 44
>SGD|S000003327 [details] [associations]
symbol:RRP46 "Exosome non-catalytic core component"
species:4932 "Saccharomyces cerevisiae" [GO:0005730 "nucleolus"
evidence=IEA] [GO:0071038 "nuclear polyadenylation-dependent tRNA
catabolic process" evidence=IDA] [GO:0000177 "cytoplasmic exosome
(RNase complex)" evidence=IDA] [GO:0000176 "nuclear exosome (RNase
complex)" evidence=IDA] [GO:0070651 "nonfunctional rRNA decay"
evidence=IC] [GO:0070478 "nuclear-transcribed mRNA catabolic
process, 3'-5' exonucleolytic nonsense-mediated decay" evidence=IC]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000467 "exonucleolytic trimming to generate
mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000178 "exosome (RNase complex)" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=IMP]
[GO:0071051 "polyadenylation-dependent snoRNA 3'-end processing"
evidence=IC] [GO:0071035 "nuclear polyadenylation-dependent rRNA
catabolic process" evidence=IMP] [GO:0070481 "nuclear-transcribed
mRNA catabolic process, non-stop decay" evidence=IC] [GO:0043628
"ncRNA 3'-end processing" evidence=IC] [GO:0034427
"nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'"
evidence=IC] InterPro:IPR001247 SGD:S000003327 InterPro:IPR015847
Pfam:PF01138 GO:GO:0005730 EMBL:BK006941 GO:GO:0003723
GO:GO:0071035 GO:GO:0071038 InterPro:IPR020568 SUPFAM:SSF54211
GO:GO:0000176 GO:GO:0000177 GO:GO:0000467 GO:GO:0070651
GO:GO:0071042 GO:GO:0070478 GO:GO:0070481 GO:GO:0071051
eggNOG:COG0689 Pfam:PF03725 SUPFAM:SSF55666 KO:K12590
GeneTree:ENSGT00550000075002 OMA:YPRQLIQ OrthoDB:EOG4HDX3Z
EMBL:Z72880 EMBL:AY389297 PIR:S64390 RefSeq:NP_011609.2
ProteinModelPortal:P53256 SMR:P53256 DIP:DIP-6838N IntAct:P53256
MINT:MINT-614217 STRING:P53256 PaxDb:P53256 PeptideAtlas:P53256
EnsemblFungi:YGR095C GeneID:852987 KEGG:sce:YGR095C CYGD:YGR095c
HOGENOM:HOG000248419 NextBio:972806 Genevestigator:P53256
GermOnline:YGR095C Uniprot:P53256
Length = 223
Score = 152 (58.6 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 57/209 (27%), Positives = 89/209 (42%)
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICIL 124
S DTKV+ +V GP + E P + ++E+I +P G EK E L+ L +
Sbjct: 21 SQDTKVICSVTGPIEPKARQELPTQLALEIIVRPAKGVATTREKVLEDKLRAVLTPLITR 80
Query: 125 TINPNTTTSVIIQVVH---DDGAL----LPCAINAACAALVDAGIPMKHLAVAI-CCCSA 176
P + Q++ D+ L C INAA ALVDAGI + + +I
Sbjct: 81 HCYPRQLCQITCQILESGEDEAEFSLRELSCCINAAFLALVDAGIALNSMCASIPIAIIK 140
Query: 177 ESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSV 236
++ I+DPT E+ K+ LSV V G + ++ ++G +
Sbjct: 141 DTSDIIVDPTA-EQLKIS-----------LSVHTLALEFVNGGKVVKNVLLLDSNGDFNE 188
Query: 237 DDYFHCLERGRAASAKLSDFLRRSLQSKL 265
D F LE G +L +RR +Q +
Sbjct: 189 DQLFSLLELGEQKCQELVTNIRRIIQDNI 217
>TAIR|locus:2124024 [details] [associations]
symbol:RRP41L "AT4G27490" species:3702 "Arabidopsis
thaliana" [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM;IDA] [GO:0006396 "RNA processing"
evidence=ISS] [GO:0009909 "regulation of flower development"
evidence=RCA] [GO:0016570 "histone modification" evidence=RCA]
[GO:0034968 "histone lysine methylation" evidence=RCA] [GO:0048449
"floral organ formation" evidence=RCA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IMP] [GO:0009845 "seed germination" evidence=IMP]
[GO:0090351 "seedling development" evidence=IMP] InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005634 GO:GO:0005737
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0009845 GO:GO:0008408
InterPro:IPR020568 SUPFAM:SSF54211 eggNOG:COG0689
HOGENOM:HOG000229515 Pfam:PF03725 SUPFAM:SSF55666 KO:K12587
OMA:GRLLCDF EMBL:BT029998 EMBL:BT030054 IPI:IPI00544536
RefSeq:NP_194479.2 UniGene:At.46035 ProteinModelPortal:A2RVK7
SMR:A2RVK7 IntAct:A2RVK7 STRING:A2RVK7 PaxDb:A2RVK7 PRIDE:A2RVK7
EnsemblPlants:AT4G27490.1 GeneID:828858 KEGG:ath:AT4G27490
TAIR:At4g27490 InParanoid:A2RVK7 PhylomeDB:A2RVK7
ProtClustDB:CLSN2680990 Genevestigator:A2RVK7 Uniprot:A2RVK7
Length = 256
Score = 143 (55.4 bits), Expect = 2.7e-09, Sum P(2) = 2.7e-09
Identities = 56/197 (28%), Positives = 89/197 (45%)
Query: 66 GDTKVLAAVYGPKAGTKKNENPE--KASIEVIW----KPRTGQIGKPEKEYEIILKRTLQ 119
G+TKV+ +V+GP+ K + + + V + P GQ G KEY +L + L+
Sbjct: 65 GNTKVIVSVFGPRESKKAMVYSDVGRLNCNVSYTNFASPTLGQ-GTDHKEYSSMLHKALE 123
Query: 120 SICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC-CSAES 178
+ ++ P TT V V+ G+ L I+ A AL DAGI M L A+ C +S
Sbjct: 124 GVIMMETFPKTTVDVFALVLESGGSDLSVLISCASLALADAGIMMYDLITAVSVSCIGKS 183
Query: 179 GYCILDPTKLEEQKMKG-FAYLVFPNSI----LSVLPEGSSLVQGEPMEHGIITSVTHGA 233
++DP EE G F P+ L++ E ++ E M+ + S G
Sbjct: 184 --LMIDPVTEEEGCEDGSFMMTCMPSRYEITQLTITGEWTTPNINEAMQLCLDASSKLGE 241
Query: 234 MSVDDYFHCLERGRAAS 250
+ D CL++ +AS
Sbjct: 242 IMRD----CLKQSASAS 254
Score = 46 (21.3 bits), Expect = 2.7e-09, Sum P(2) = 2.7e-09
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSA 31
++ R DGR +Q RP + A GSA
Sbjct: 30 LDWSRPDGRGFHQCRPALLQTGAVSSASGSA 60
>WB|WBGene00000798 [details] [associations]
symbol:crn-5 species:6239 "Caenorhabditis elegans"
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] [GO:0006309 "apoptotic DNA fragmentation"
evidence=IMP] [GO:0006396 "RNA processing" evidence=IMP]
[GO:0000178 "exosome (RNase complex)" evidence=IMP] [GO:0008408
"3'-5' exonuclease activity" evidence=ISS] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0032077 "positive regulation of
deoxyribonuclease activity" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0008340 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0006396 GO:GO:0003690
GO:GO:0000178 GO:GO:0006309 GO:GO:0008408 InterPro:IPR020568
SUPFAM:SSF54211 EMBL:Z49909 SUPFAM:SSF55666 KO:K12590
GeneTree:ENSGT00550000075002 GO:GO:0032077 EMBL:AY303579 PIR:T19247
RefSeq:NP_496284.1 UniGene:Cel.23323 ProteinModelPortal:G5EG59
SMR:G5EG59 IntAct:G5EG59 EnsemblMetazoa:C14A4.5 GeneID:174634
KEGG:cel:CELE_C14A4.5 CTD:174634 WormBase:C14A4.5 OMA:CGDNKFN
EvolutionaryTrace:G5EG59 NextBio:884842 Uniprot:G5EG59
Length = 214
Score = 128 (50.1 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
Identities = 36/136 (26%), Positives = 62/136 (45%)
Query: 60 CYWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQ 119
C+ G T + A+ GP + E ++++ ++ G I+ TL
Sbjct: 23 CF--SQGATCIWASCSGPGDVHASKASDEAMTLDISYRANCGD--NKFNVLNNIIHSTLS 78
Query: 120 SICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESG 179
+ L + P+TT SV + + DDG++ AIN AC AL+D G+P + + + +
Sbjct: 79 NAINLELFPHTTISVTVHGIQDDGSMGAVAINGACFALLDNGMPFETVFCGVLIVRVKDE 138
Query: 180 YCILDPTKLEEQKMKG 195
I+DPT +E G
Sbjct: 139 L-IIDPTAKQEAASTG 153
Score = 58 (25.5 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 13 QLRPLACSCSILHRAHGSASWSQGFRFIQTS 43
+LR + C S L A GSA +SQG I S
Sbjct: 4 RLREMRCELSFLKNADGSACFSQGATCIWAS 34
>UNIPROTKB|Q5RKV6 [details] [associations]
symbol:EXOSC6 "Exosome complex component MTR3" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000178 "exosome (RNase complex)" evidence=IDA]
[GO:0045190 "isotype switching" evidence=ISS] [GO:0045006 "DNA
deamination" evidence=IDA] [GO:0004532 "exoribonuclease activity"
evidence=IDA] [GO:0000288 "nuclear-transcribed mRNA catabolic
process, deadenylation-dependent decay" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=TAS] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 GO:GO:0005829 GO:GO:0010467 GO:GO:0005730
GO:GO:0003723 GO:GO:0000178 GO:GO:0045190 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0006364 GO:GO:0043928 PDB:2NN6 PDBsum:2NN6
GO:GO:0045006 HOGENOM:HOG000229515 SUPFAM:SSF55666 CTD:118460
HOVERGEN:HBG057826 KO:K12587 OMA:GRLLCDF OrthoDB:EOG4D7Z6K
EMBL:AC009060 EMBL:BC052252 IPI:IPI00073602 RefSeq:NP_478126.1
UniGene:Hs.660633 UniGene:Hs.740491 ProteinModelPortal:Q5RKV6
SMR:Q5RKV6 IntAct:Q5RKV6 STRING:Q5RKV6 PhosphoSite:Q5RKV6
DMDM:74736141 PaxDb:Q5RKV6 PeptideAtlas:Q5RKV6 PRIDE:Q5RKV6
Ensembl:ENST00000435634 GeneID:118460 KEGG:hsa:118460
UCSC:uc002eym.1 GeneCards:GC16M070284 HGNC:HGNC:19055 MIM:606490
neXtProt:NX_Q5RKV6 PharmGKB:PA134932096 eggNOG:NOG303282
InParanoid:Q5RKV6 PhylomeDB:Q5RKV6 ChiTaRS:EXOSC6
EvolutionaryTrace:Q5RKV6 GenomeRNAi:118460 NextBio:80292
Bgee:Q5RKV6 CleanEx:HS_EXOSC6 Genevestigator:Q5RKV6 Uniprot:Q5RKV6
Length = 272
Score = 122 (48.0 bits), Expect = 4.5e-09, Sum P(3) = 4.5e-09
Identities = 37/115 (32%), Positives = 53/115 (46%)
Query: 104 GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIP 163
G E+E + L+ L+ L P V ++ D G+ L A+ AA AL DAG+
Sbjct: 116 GCEERELALALQEALEPAVRLGRYPRAQLEVSALLLEDGGSALAAALTAAALALADAGVE 175
Query: 164 MKHLAVAICCCSAESGYC---ILDPTKLEEQKMK-GFAYLVFP--NSILSVLPEG 212
M L V C S G +LDPT+LEE++ G + P N + +L G
Sbjct: 176 MYDLVVG-CGLSLAPGPAPTWLLDPTRLEEERAAAGLTVALMPVLNQVAGLLGSG 229
Score = 54 (24.1 bits), Expect = 4.5e-09, Sum P(3) = 4.5e-09
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 4 DRADG-RNPNQLRPLACSCSILHRAHGSASWSQG 36
+ A G R+P +LRP+ +L +A GSA G
Sbjct: 25 EEAPGTRDPTRLRPVYARAGLLSQAKGSAYLEAG 58
Score = 48 (22.0 bits), Expect = 4.5e-09, Sum P(3) = 4.5e-09
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 62 WVGSGDTKVLAAVYGPKA--GTKKNENPEKASIE 93
++ +G TKVL AV GP+ G ++ P A E
Sbjct: 54 YLEAGGTKVLCAVSGPRQAEGGERGGGPAGAGGE 87
>CGD|CAL0002905 [details] [associations]
symbol:orf19.4582 species:5476 "Candida albicans" [GO:0000177
"cytoplasmic exosome (RNase complex)" evidence=IEA] [GO:0000176
"nuclear exosome (RNase complex)" evidence=IEA] [GO:0034473 "U1
snRNA 3'-end processing" evidence=IEA] [GO:0070478
"nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic
nonsense-mediated decay" evidence=IEA] [GO:0016075 "rRNA catabolic
process" evidence=IEA] [GO:0034476 "U5 snRNA 3'-end processing"
evidence=IEA] [GO:0071028 "nuclear mRNA surveillance" evidence=IEA]
[GO:0000467 "exonucleolytic trimming to generate mature 3'-end of
5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=IEA] [GO:0071039 "nuclear
polyadenylation-dependent CUT catabolic process" evidence=IEA]
[GO:0071051 "polyadenylation-dependent snoRNA 3'-end processing"
evidence=IEA] [GO:0034475 "U4 snRNA 3'-end processing"
evidence=IEA] [GO:0071038 "nuclear polyadenylation-dependent tRNA
catabolic process" evidence=IEA] InterPro:IPR001247 CGD:CAL0002905
InterPro:IPR015847 Pfam:PF01138 EMBL:AACQ01000005 EMBL:AACQ01000006
InterPro:IPR020568 SUPFAM:SSF54211 KO:K11600 eggNOG:COG0689
Pfam:PF03725 SUPFAM:SSF55666 RefSeq:XP_722654.1 RefSeq:XP_722799.1
ProteinModelPortal:Q5AMR4 STRING:Q5AMR4 GeneID:3635514
GeneID:3635642 KEGG:cal:CaO19.12051 KEGG:cal:CaO19.4582
Uniprot:Q5AMR4
Length = 240
Score = 140 (54.3 bits), Expect = 8.3e-09, Sum P(2) = 8.3e-09
Identities = 42/142 (29%), Positives = 69/142 (48%)
Query: 62 WVGSGDTKVLAAVYGP-KAGTKKNENPEKASIEV---IWKPRTGQIGKPEK------EYE 111
+V G+TKV+ V GP + + ++ E+A+IEV I T + K + E +
Sbjct: 38 YVEQGNTKVMCTVQGPIEPALRSQQHSERANIEVNLNIASFSTFERKKRSRNERRLVELK 97
Query: 112 IILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAI 171
L++T + ++ + P T + +QV+ DG +L IN+ AL+DAGI M +
Sbjct: 98 TTLEKTFEESVMINLYPRTNIVINVQVLCQDGGMLAAVINSITLALIDAGISMYDYVSGV 157
Query: 172 CCCSAESGYCILDPTKLEEQKM 193
C + +LD LEE M
Sbjct: 158 SCGLYDQTP-LLDVNNLEEHDM 178
Score = 43 (20.2 bits), Expect = 8.3e-09, Sum P(2) = 8.3e-09
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 5 RADGRNPNQLRPLACSCSIL-HRAHGSASWSQG 36
R DGR N+LR C + + + GS+ QG
Sbjct: 10 RIDGRRWNELRRFECRINTHPNSSDGSSYVEQG 42
>POMBASE|SPAC3G9.10c [details] [associations]
symbol:rrp41 "exosomal 3'-to-5' phosphorolytic
exoribonuclease Rrp41 (predicted)" species:4896
"Schizosaccharomyces pombe" [GO:0000175 "3'-5'-exoribonuclease
activity" evidence=ISO] [GO:0000176 "nuclear exosome (RNase
complex)" evidence=ISO] [GO:0000177 "cytoplasmic exosome (RNase
complex)" evidence=ISO] [GO:0000467 "exonucleolytic trimming to
generate mature 3'-end of 5.8S rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005829
"cytosol" evidence=IDA] [GO:0034661 "ncRNA catabolic process"
evidence=ISO] [GO:0044732 "mitotic spindle pole body" evidence=IDA]
[GO:0070478 "nuclear-transcribed mRNA catabolic process, 3'-5'
exonucleolytic nonsense-mediated decay" evidence=ISO] [GO:0070481
"nuclear-transcribed mRNA catabolic process, non-stop decay"
evidence=ISO] [GO:0070651 "nonfunctional rRNA decay" evidence=ISO]
[GO:0071035 "nuclear polyadenylation-dependent rRNA catabolic
process" evidence=ISO] [GO:0071038 "nuclear
polyadenylation-dependent tRNA catabolic process" evidence=ISO]
[GO:0071042 "nuclear polyadenylation-dependent mRNA catabolic
process" evidence=ISO] InterPro:IPR001247 InterPro:IPR015847
PomBase:SPAC3G9.10c Pfam:PF01138 GO:GO:0005829 EMBL:CU329670
GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0044732 GO:GO:0003723
GO:GO:0071035 GO:GO:0071038 InterPro:IPR020568 SUPFAM:SSF54211
KO:K11600 GO:GO:0000176 GO:GO:0000175 GO:GO:0000177 GO:GO:0000467
GO:GO:0070651 GO:GO:0071042 GO:GO:0070478 GO:GO:0070481
eggNOG:COG0689 HOGENOM:HOG000229515 Pfam:PF03725 SUPFAM:SSF55666
EMBL:D89141 PIR:T11646 PIR:T11740 RefSeq:NP_594082.1
ProteinModelPortal:O42872 IntAct:O42872 STRING:O42872
EnsemblFungi:SPAC3G9.10c.1 GeneID:2543451 KEGG:spo:SPAC3G9.10c
OMA:AIMPKTG OrthoDB:EOG45MRFG NextBio:20804464 Uniprot:O42872
Length = 242
Score = 140 (54.3 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 49/151 (32%), Positives = 70/151 (46%)
Query: 66 GDTKVLAAVYGPKAGTKKNE-NPEKASIEV---IWKPRTGQIGKPEKEYEII------LK 115
G+TKVL V GP K++ ++ + V I T + K K I L+
Sbjct: 44 GNTKVLCIVDGPSEPVIKSKARADRTFVNVEINIASFSTIDVKKRFKSDRRIQLQCLALQ 103
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
T + I + P + SV + V+ DDGA++ INA AL+DAGIP+K +CC +
Sbjct: 104 NTFEEIIQTELYPRSQISVYLHVLQDDGAVMASCINATTLALIDAGIPVKDF---VCCST 160
Query: 176 A---ESGYCILDPTKLEEQKMKGFAYLVFPN 203
A ES +LD LEE + V N
Sbjct: 161 AGIVESDM-LLDLNSLEESALSWLTVAVLGN 190
Score = 42 (19.8 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSA 31
R DGR +++R C I +GSA
Sbjct: 13 RNDGRRWDEMRNFQCRIGIEPSENGSA 39
>ZFIN|ZDB-GENE-050522-362 [details] [associations]
symbol:exosc6 "exosome component 6" species:7955
"Danio rerio" [GO:0000178 "exosome (RNase complex)"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR001247 Pfam:PF01138
ZFIN:ZDB-GENE-050522-362 GO:GO:0005737 GO:GO:0005730 GO:GO:0003723
GO:GO:0000178 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0006364
HSSP:Q9UXC2 eggNOG:COG0689 GeneTree:ENSGT00550000074804
HOGENOM:HOG000229515 EMBL:BC065602 EMBL:BC095173 IPI:IPI00483784
RefSeq:NP_001018322.1 UniGene:Dr.80144 ProteinModelPortal:Q6P0I8
STRING:Q6P0I8 Ensembl:ENSDART00000052348 GeneID:326786
KEGG:dre:326786 CTD:118460 HOVERGEN:HBG057826 InParanoid:Q6P0I8
KO:K12587 OMA:GRLLCDF OrthoDB:EOG4D7Z6K NextBio:20809731
Bgee:Q6P0I8 Uniprot:Q6P0I8
Length = 271
Score = 141 (54.7 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 42/140 (30%), Positives = 71/140 (50%)
Query: 62 WVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVI---WKP-----RTGQI-GKPEKEYEI 112
++ +G+TK++ +VYGPK +++E K V P R I G E++
Sbjct: 60 YIEAGNTKIICSVYGPKETERRDETDMKTGRLVCDFRLAPFSCVKRGAWIQGSEERDLSA 119
Query: 113 ILKRTLQ-SICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAI 171
L +L+ +C+ P + V + V+ +DG++L A+ A AL DAGI M + +
Sbjct: 120 TLMESLRPGVCLHRY-PRSQIDVNVMVLENDGSVLAHAVTCASMALADAGIEMYDIVLG- 177
Query: 172 CCCSAESGY-CILDPTKLEE 190
C +SG C++DP+ EE
Sbjct: 178 -CTLRQSGNACLVDPSYAEE 196
Score = 43 (20.2 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 9 RNPNQLRPLACSCSILHRAHGSA 31
R +RP+ C ++ +A GSA
Sbjct: 37 RGNGDVRPVFARCGLVSQAKGSA 59
>UNIPROTKB|Q95Z09 [details] [associations]
symbol:RRP41B "Rrp41p homologue" species:5691 "Trypanosoma
brucei" [GO:0000178 "exosome (RNase complex)" evidence=IDA]
InterPro:IPR001247 Pfam:PF01138 GO:GO:0000178 InterPro:IPR020568
SUPFAM:SSF54211 EMBL:AJ309001 ProteinModelPortal:Q95Z09
IntAct:Q95Z09 STRING:Q95Z09 GenomeReviews:AE017150_GR
eggNOG:NOG277594 ProtClustDB:CLSZ2438846 Uniprot:Q95Z09
Length = 256
Score = 123 (48.4 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 51/165 (30%), Positives = 75/165 (45%)
Query: 62 WVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWK---PRTGQIGK----PEKEYEII- 113
W G T V A+ GP A ++N I V P+ G G+ +E E
Sbjct: 33 WYSQGLTAVTVAINGPTAARQENYRRCTTCIHVNRAARIPQEGGTGRLIMMERRERERCE 92
Query: 114 ---LKRTLQSI--CILTIN--PNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKH 166
LK+ L S+ I+ ++ P + V+ DDGAL A NA AL+DAG+P +
Sbjct: 93 DGELKQFLTSLVEAIVCLDRFPRCVLEAHVTVLMDDGALFAVASNAIMCALLDAGVPCRS 152
Query: 167 L--AVAICCCSAE-SGY-----CILDPTKLEEQ--KMKGFAYLVF 201
AV++ C+ E SG LDPT +EE +++ +A F
Sbjct: 153 TIAAVSLIMCNPEASGNEGEPEIFLDPTAVEESTDEVRSYASATF 197
Score = 54 (24.1 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 3 VDRADGRNPNQLRPLACSCSILHRAHGSASWSQG 36
+ R DGR ++R S L + GSA +SQG
Sbjct: 4 ISRRDGRTAREMRGKELRTSDLSQFDGSAWYSQG 37
>RGD|1309832 [details] [associations]
symbol:Exosc6 "exosome component 6" species:10116 "Rattus
norvegicus" [GO:0000178 "exosome (RNase complex)" evidence=IEA;ISO]
[GO:0045006 "DNA deamination" evidence=IEA;ISO] [GO:0045190
"isotype switching" evidence=ISO] [GO:0045830 "positive regulation
of isotype switching" evidence=ISO] [GO:0004532 "exoribonuclease
activity" evidence=ISO] InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 RGD:1309832 GO:GO:0000178 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0045006 GeneTree:ENSGT00550000074804
SUPFAM:SSF55666 CTD:118460 KO:K12587 OMA:GRLLCDF OrthoDB:EOG4D7Z6K
IPI:IPI00359650 RefSeq:XP_003751927.1 RefSeq:XP_003753157.1
PRIDE:D3ZW38 Ensembl:ENSRNOT00000025179 GeneID:307850
KEGG:rno:307850 UCSC:RGD:1309832 Uniprot:D3ZW38
Length = 272
Score = 117 (46.2 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 37/120 (30%), Positives = 54/120 (45%)
Query: 99 RTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALV 158
R Q ++E + L+ L+ L P V ++ D G+ L A+ AA AL
Sbjct: 111 RAPQGSSEDRELGLALQEALEPAVRLGRYPRAQLEVSALLLEDGGSALAAALTAAALALA 170
Query: 159 DAGIPMKHLAVAICCCSAESGYC---ILDPTKLEEQKMK-GFAYLVFP--NSILSVLPEG 212
DAG+ M L V C S G +LDPT+LEE+ + G + P N + +L G
Sbjct: 171 DAGVEMYDLVVG-CGLSLTPGPSPTWLLDPTRLEEEHSEAGLTVALMPVLNQVAGLLGSG 229
Score = 52 (23.4 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 9 RNPNQLRPLACSCSILHRAHGSASWSQG 36
R+P +LRP+ +L +A GSA G
Sbjct: 31 RDPTRLRPVYARAGLLSQAKGSAYLEAG 58
Score = 48 (22.0 bits), Expect = 5.2e-06, Sum P(2) = 5.2e-06
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 62 WVGSGDTKVLAAVYGPKA--GTKKNENPEKASIE 93
++ +G TKVL AV GP+ G ++ P A E
Sbjct: 54 YLEAGGTKVLCAVSGPRQAEGGERGGGPAGAGGE 87
>ASPGD|ASPL0000013004 [details] [associations]
symbol:AN3812 species:162425 "Emericella nidulans"
[GO:0034473 "U1 snRNA 3'-end processing" evidence=IEA] [GO:0070478
"nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic
nonsense-mediated decay" evidence=IEA] [GO:0016075 "rRNA catabolic
process" evidence=IEA] [GO:0071028 "nuclear mRNA surveillance"
evidence=IEA] [GO:0034476 "U5 snRNA 3'-end processing"
evidence=IEA] [GO:0000467 "exonucleolytic trimming to generate
mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0071039 "nuclear
polyadenylation-dependent CUT catabolic process" evidence=IEA]
[GO:0071051 "polyadenylation-dependent snoRNA 3'-end processing"
evidence=IEA] [GO:0034475 "U4 snRNA 3'-end processing"
evidence=IEA] [GO:0071038 "nuclear polyadenylation-dependent tRNA
catabolic process" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=IEA] [GO:0000177 "cytoplasmic exosome (RNase complex)"
evidence=IEA] [GO:0000176 "nuclear exosome (RNase complex)"
evidence=IEA] InterPro:IPR001247 Pfam:PF01138 EMBL:BN001302
EMBL:AACD01000061 GO:GO:0004519 InterPro:IPR020568 SUPFAM:SSF54211
KO:K11600 eggNOG:COG0689 HOGENOM:HOG000229515 RefSeq:XP_661416.1
ProteinModelPortal:Q5B6L8 STRING:Q5B6L8
EnsemblFungi:CADANIAT00004900 GeneID:2873233 KEGG:ani:AN3812.2
OMA:GCKQVRE OrthoDB:EOG4H1F52 Uniprot:Q5B6L8
Length = 265
Score = 123 (48.4 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 40/130 (30%), Positives = 61/130 (46%)
Query: 62 WVGSGDTKVLAAVYGPKAG-----TKKNENPEKASIEVIW----------KPRTGQIGKP 106
++ G+T +L +V+GP G T + A +EV K R G +
Sbjct: 42 YLAMGNTTILCSVHGPAEGRRGDATGGSAGSSGAVVEVDVNIAGFASVDRKRRAGGSDRQ 101
Query: 107 EKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKH 166
L+ QS + P++T S+ + V+ DG++L A+NA ALVDAGIPM
Sbjct: 102 SGRIASTLRSAFQSHLHTYLYPHSTISIHVSVLSSDGSVLAAAVNACTLALVDAGIPMPG 161
Query: 167 LAVAICCCSA 176
L +C C+A
Sbjct: 162 L---LCGCTA 168
Score = 44 (20.5 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQG 36
R DGR N+LR L S + GS+ + G
Sbjct: 15 RLDGRRWNELRLLQAQISTNPASSGSSYLAMG 46
>MGI|MGI:1919794 [details] [associations]
symbol:Exosc6 "exosome component 6" species:10090 "Mus
musculus" [GO:0000178 "exosome (RNase complex)" evidence=ISO]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0045006 "DNA deamination" evidence=ISO]
[GO:0045190 "isotype switching" evidence=IMP] [GO:0045830 "positive
regulation of isotype switching" evidence=IMP] InterPro:IPR001247
InterPro:IPR015847 MGI:MGI:1919794 Pfam:PF01138 GO:GO:0005737
GO:GO:0005730 GO:GO:0003723 GO:GO:0000178 GO:GO:0045190
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0006364 HSSP:Q9UXC2
eggNOG:COG0689 HOGENOM:HOG000229515 SUPFAM:SSF55666 CTD:118460
HOVERGEN:HBG057826 KO:K12587 OrthoDB:EOG4D7Z6K EMBL:AK012102
EMBL:AK088532 EMBL:BC116985 EMBL:BC119082 IPI:IPI00466593
RefSeq:NP_082550.1 UniGene:Mm.24174 UniGene:Mm.334810
ProteinModelPortal:Q8BTW3 SMR:Q8BTW3 IntAct:Q8BTW3 STRING:Q8BTW3
PhosphoSite:Q8BTW3 PaxDb:Q8BTW3 PRIDE:Q8BTW3 GeneID:72544
KEGG:mmu:72544 UCSC:uc009nlp.1 InParanoid:Q8BTW3 NextBio:336459
CleanEx:MM_EXOSC6 Genevestigator:Q8BTW3 Uniprot:Q8BTW3
Length = 273
Score = 116 (45.9 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 38/121 (31%), Positives = 54/121 (44%)
Query: 98 PRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAAL 157
P+ G G ++E + L+ L+ L P V ++ D G L A+ AA AL
Sbjct: 113 PQGG--GGEDRELGLALQEALEPAVRLGRYPRAQLEVSALLLEDGGCALAAALTAAALAL 170
Query: 158 VDAGIPMKHLAVAICCCSAESGYC---ILDPTKLEEQ-KMKGFAYLVFP--NSILSVLPE 211
DAG+ M L V C S G +LDPT+LEE+ G + P N + +L
Sbjct: 171 ADAGVEMYDLVVG-CGLSLTPGPSPTWLLDPTRLEEEHSAAGLTVALMPVLNQVAGLLGS 229
Query: 212 G 212
G
Sbjct: 230 G 230
Score = 52 (23.4 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 9 RNPNQLRPLACSCSILHRAHGSASWSQG 36
R+P +LRP+ +L +A GSA G
Sbjct: 31 RDPTRLRPVYARAGLLSQAKGSAYLEAG 58
Score = 50 (22.7 bits), Expect = 4.4e-06, Sum P(2) = 4.4e-06
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 62 WVGSGDTKVLAAVYGPKA--GTKKNENPEKASIE 93
++ +G TKVL AV GP+ G ++ P A E
Sbjct: 54 YLEAGGTKVLCAVSGPRQAEGGERGSGPAGAGGE 87
>UNIPROTKB|G4MM07 [details] [associations]
symbol:MGG_06785 "Exosome complex exonuclease RRP41"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0004527 EMBL:CM001231
InterPro:IPR020568 SUPFAM:SSF54211 KO:K11600 SUPFAM:SSF55666
RefSeq:XP_003709504.1 ProteinModelPortal:G4MM07
EnsemblFungi:MGG_06785T0 GeneID:2684958 KEGG:mgr:MGG_06785
Uniprot:G4MM07
Length = 280
Score = 131 (51.2 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 66/258 (25%), Positives = 101/258 (39%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR N+LR C I R +A G +++ H + V T
Sbjct: 14 RVDGRRWNELR--RCHAQI--RTQAAAD---GSSYLEMGHTKV--MCVVTGPSEAAPGQR 64
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEV-----IWKPRTGQIGKPEKEYEIILKRTLQ 119
+ A G G + E SI V + + + G+ K +E + + L
Sbjct: 65 RTGVNITATATGGGQGAQSKEAEVVVSIVVAGFSSVDRKKRGRGDKRIQELQATVSHALS 124
Query: 120 SICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESG 179
+ + ++T + + V+ DG+LL INAA A VDAGIPM VA C + S
Sbjct: 125 ATLHTHLFQHSTITFSLHVLSQDGSLLAALINAATLAAVDAGIPMADYVVA-CSAGSTSS 183
Query: 180 YC--------ILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTH 231
Y +LD + EE ++ G + V+ S VQ +E G++
Sbjct: 184 YAAADESADPLLDLNQQEETELPGLTAATLGATDRVVVLSCESRVQASRLE-GMLAVAVD 242
Query: 232 GAMSVDDYFHCL--ERGR 247
G V + + ERGR
Sbjct: 243 GCKQVREILDRVVKERGR 260
>UNIPROTKB|Q95Z13 [details] [associations]
symbol:RRP41A "Rrp41p homologue" species:5691 "Trypanosoma
brucei" [GO:0000178 "exosome (RNase complex)" evidence=IDA]
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0000178
InterPro:IPR020568 SUPFAM:SSF54211 SUPFAM:SSF55666 EMBL:AJ308997
ProteinModelPortal:Q95Z13 IntAct:Q95Z13 STRING:Q95Z13
EuPathDB:TriTrypDB:Tb427.10.7450 EuPathDB:TriTrypDB:Tb927.10.7450
Uniprot:Q95Z13
Length = 252
Score = 127 (49.8 bits), Expect = 6.1e-06, P = 6.1e-06
Identities = 43/145 (29%), Positives = 70/145 (48%)
Query: 55 SKCYFCYWVGSGDTKVLAAVYGPKAGTKKNE---NPEKASIEVIWKPRTGQIGKPEKEY- 110
S C C V SG + V A VYGP+ + + + N + +V+ G+ + ++ Y
Sbjct: 34 SGCDGCCTVVSGLSHVCATVYGPREVSNRLDGKYNEVTITCDVVVAAFAGERRREQQRYS 93
Query: 111 ---EIILKRTL---QSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPM 164
E I L +S+ +L+ PN+ + I+V+ DG+ INAAC AL+DA I M
Sbjct: 94 RLSEDISASVLDVARSVVLLSQYPNSQIHICIEVLKQDGSDKAACINAACLALIDASIAM 153
Query: 165 KHLAVAICCCSAESGYCILDPTKLE 189
+ + E G+ ++D T E
Sbjct: 154 RDVVYTQTVGLIE-GFDVVDLTTEE 177
>SGD|S000003427 [details] [associations]
symbol:SKI6 "Exosome non-catalytic core component"
species:4932 "Saccharomyces cerevisiae" [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0070481 "nuclear-transcribed mRNA catabolic
process, non-stop decay" evidence=IC] [GO:0071039 "nuclear
polyadenylation-dependent CUT catabolic process" evidence=IMP]
[GO:0071038 "nuclear polyadenylation-dependent tRNA catabolic
process" evidence=IDA] [GO:0016075 "rRNA catabolic process"
evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA] [GO:0000467 "exonucleolytic
trimming to generate mature 3'-end of 5.8S rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
[GO:0034475 "U4 snRNA 3'-end processing" evidence=IGI;IMP]
[GO:0034427 "nuclear-transcribed mRNA catabolic process,
exonucleolytic, 3'-5'" evidence=IMP] [GO:0070478
"nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic
nonsense-mediated decay" evidence=IGI;IMP] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0071051 "polyadenylation-dependent snoRNA 3'-end
processing" evidence=IMP] [GO:0071028 "nuclear mRNA surveillance"
evidence=IGI;IMP] [GO:0005634 "nucleus" evidence=IEA] [GO:0000178
"exosome (RNase complex)" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=IC]
[GO:0034473 "U1 snRNA 3'-end processing" evidence=IGI;IMP]
[GO:0034476 "U5 snRNA 3'-end processing" evidence=IGI;IMP]
[GO:0000177 "cytoplasmic exosome (RNase complex)" evidence=IDA]
[GO:0000176 "nuclear exosome (RNase complex)" evidence=IDA]
[GO:0070651 "nonfunctional rRNA decay" evidence=IC]
InterPro:IPR001247 SGD:S000003427 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005730 EMBL:BK006941 GO:GO:0003723 GO:GO:0071039
GO:GO:0071038 InterPro:IPR020568 SUPFAM:SSF54211 RefSeq:NP_011711.3
GeneID:853109 KEGG:sce:YGR195W KO:K11600 GO:GO:0000176
GO:GO:0000177 GO:GO:0000467 GO:GO:0070651 GO:GO:0071042
GO:GO:0070478 GO:GO:0070481 GO:GO:0071051 KO:K03233 eggNOG:COG0689
GeneTree:ENSGT00550000074804 HOGENOM:HOG000229515 OMA:DVFIEVL
GO:GO:0071028 Pfam:PF03725 SUPFAM:SSF55666 EMBL:X82775 EMBL:Z72981
GO:GO:0034475 GO:GO:0034476 GO:GO:0034473 OrthoDB:EOG45MRFG
EMBL:Z72980 EMBL:AY558509 PIR:S59180 RefSeq:NP_011717.4 PDB:2WP8
PDBsum:2WP8 ProteinModelPortal:P46948 SMR:P46948 DIP:DIP-2083N
IntAct:P46948 MINT:MINT-555587 STRING:P46948 PaxDb:P46948
EnsemblFungi:YGR195W GeneID:853115 KEGG:sce:YGR201C CYGD:YGR195w
EvolutionaryTrace:P46948 NextBio:973121 Genevestigator:P46948
GermOnline:YGR195W Uniprot:P46948
Length = 246
Score = 111 (44.1 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 42/143 (29%), Positives = 64/143 (44%)
Query: 62 WVGSGDTKVLAAVYGPKAGTKKNE-NPEKASIEV---IWK----PRTGQIGKPEK---EY 110
++ G+ K++ V GPK K++ + KA + V I K R+ K E+ E
Sbjct: 41 YMEQGNNKIITLVKGPKEPRLKSQMDTSKALLNVSVNITKFSKFERSKSSHKNERRVLEI 100
Query: 111 EIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVA 170
+ L R + +L I P T + I V+ DG ++ IN AL+DAGI M
Sbjct: 101 QTSLVRMFEKNVMLNIYPRTVIDIEIHVLEQDGGIMGSLINGITLALIDAGISMFDYISG 160
Query: 171 ICCCSAESGYCILDPTKLEEQKM 193
I ++ +LD LEE M
Sbjct: 161 ISVGLYDTTP-LLDTNSLEENAM 182
Score = 50 (22.7 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 5 RADGRNPNQLRPLACSCSIL-HRAHGSASWSQG 36
R DGR N+LR S + H A GS+ QG
Sbjct: 13 RLDGRRWNELRRFESSINTHPHAADGSSYMEQG 45
>FB|FBgn0036916 [details] [associations]
symbol:Mtr3 "Mtr3" species:7227 "Drosophila melanogaster"
[GO:0000175 "3'-5'-exoribonuclease activity" evidence=ISS]
[GO:0000176 "nuclear exosome (RNase complex)" evidence=ISS;IDA]
[GO:0000177 "cytoplasmic exosome (RNase complex)" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0010468 "regulation of
gene expression" evidence=IMP] InterPro:IPR001247 Pfam:PF01138
GO:GO:0005737 EMBL:AE014296 GO:GO:0016787 GO:GO:0010468
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000176
GeneTree:ENSGT00550000074804 KO:K12587 FlyBase:FBgn0036916
UniGene:Dm.13639 EMBL:BT030767 RefSeq:NP_649157.1 UniGene:Dm.27179
SMR:Q9VW53 IntAct:Q9VW53 MINT:MINT-905327 STRING:Q9VW53
EnsemblMetazoa:FBtr0074918 GeneID:40173 KEGG:dme:Dmel_CG8025
UCSC:CG8025-RA CTD:40173 InParanoid:Q9VW53 OMA:STAINCC
GenomeRNAi:40173 NextBio:817403 Uniprot:Q9VW53
Length = 326
Score = 120 (47.3 bits), Expect = 7.6e-05, P = 7.6e-05
Identities = 61/220 (27%), Positives = 95/220 (43%)
Query: 66 GDTKVLAAVYGPKA---GTKKNENPEKASIEVIWKP-RTGQIGK-PEKEYEI--ILKRTL 118
G+TKVLA V PK + + N + V + TG + PE+E + +L + +
Sbjct: 69 GNTKVLAIVAPPKELIRASARRMNMGVLNCYVNFAAFSTGDLDSVPERERHLSSMLTKAM 128
Query: 119 QSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAES 178
+ + T N + + ++ DDG LL AIN ALV+ GI L A C
Sbjct: 129 EPVVCRTEFLNFQLDIRVLILDDDGCLLSTAINCCGVALVECGISTYDLITASTACIYRD 188
Query: 179 GYCILDPT-KLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVD 237
+ L+P+ K+EE K NS SS EHG+I +T + +
Sbjct: 189 -HVFLNPSAKVEELLWK------HRNSSTDSTTSPSSA-----QEHGLI--ITASMDTFE 234
Query: 238 DYFHCLERGRAASA---KLSDF---LRRSLQSKLPGDLSK 271
C + G + A KL D+ + +SL+ + G L+K
Sbjct: 235 QIAQCQQCGYLSPATYVKLLDYTLAINKSLRELVKGVLTK 274
>UNIPROTKB|G4MRK3 [details] [associations]
symbol:MGG_16298 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0043581 "mycelium development" evidence=IEP]
InterPro:IPR001247 Pfam:PF01138 EMBL:CM001231 GO:GO:0043581
InterPro:IPR020568 SUPFAM:SSF54211 RefSeq:XP_003710038.1
ProteinModelPortal:G4MRK3 EnsemblFungi:MGG_16298T0 GeneID:12985322
KEGG:mgr:MGG_16298 Uniprot:G4MRK3
Length = 260
Score = 112 (44.5 bits), Expect = 0.00039, P = 0.00039
Identities = 35/118 (29%), Positives = 59/118 (50%)
Query: 70 VLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPN 129
V A+ GP +++E+P +A ++VI +P G G E+ E +L+ TL+ I ++ P
Sbjct: 30 VTASANGPIEAQRRDEDPYEALVDVIVRPAAGVGGTRERHLESLLQATLRQIILVKNFPR 89
Query: 130 TTTSVIIQVV---HDDGA------------LLPCAINAACAALVDAGIPMKHLAVAIC 172
V++QV +D A ++P + AA AL+ A IP++ A A C
Sbjct: 90 GLIQVVLQVKSSPENDYASTKLVQANLNLPIIPALLQAAVLALLSAAIPLR--ATATC 145
>GENEDB_PFALCIPARUM|PFB0415c [details] [associations]
symbol:PFB0415c "hypothetical protein"
species:5833 "Plasmodium falciparum" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001247 Pfam:PF01138 InterPro:IPR020568
SUPFAM:SSF54211 EMBL:AE001362 RefSeq:XP_001349602.2
ProteinModelPortal:O96177 EnsemblProtists:PFB0415c:mRNA
GeneID:812684 KEGG:pfa:PFB0415c EuPathDB:PlasmoDB:PF3D7_0209200
HOGENOM:HOG000284275 ProtClustDB:CLSZ2446608 Uniprot:O96177
Length = 275
Score = 109 (43.4 bits), Expect = 0.00099, P = 0.00099
Identities = 37/149 (24%), Positives = 66/149 (44%)
Query: 53 FTSKCYFCYWVGSGDTKVLAAVYGPKAGTK-KNENPEKASIEVIWKPRTGQIGKPEKEYE 111
F S C++ G+TK+L VYGP +K + K ++V IG +++ +
Sbjct: 54 FGSSCFYSL----GNTKILTTVYGPNPDSKYATYSKGKVFLDVK-SLNINTIGASDRQRD 108
Query: 112 IILKRTL----QSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHL 167
+K L +I +L P + + ++ DDG L + AL+ A I MK +
Sbjct: 109 DDIKSLLIECISNIILLEKYPQCSIKIKCLIIQDDGGCLSATLTCISLALIKAQIQMKDI 168
Query: 168 AVAI-----CCCSAESGYCILDPTKLEEQ 191
++I C + Y ++D +EE+
Sbjct: 169 IISININSIICPVTKKMYHLVDLDGMEEK 197
>UNIPROTKB|O96177 [details] [associations]
symbol:PFB0415c "3' exoribonuclease, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001247 Pfam:PF01138 InterPro:IPR020568
SUPFAM:SSF54211 EMBL:AE001362 RefSeq:XP_001349602.2
ProteinModelPortal:O96177 EnsemblProtists:PFB0415c:mRNA
GeneID:812684 KEGG:pfa:PFB0415c EuPathDB:PlasmoDB:PF3D7_0209200
HOGENOM:HOG000284275 ProtClustDB:CLSZ2446608 Uniprot:O96177
Length = 275
Score = 109 (43.4 bits), Expect = 0.00099, P = 0.00099
Identities = 37/149 (24%), Positives = 66/149 (44%)
Query: 53 FTSKCYFCYWVGSGDTKVLAAVYGPKAGTK-KNENPEKASIEVIWKPRTGQIGKPEKEYE 111
F S C++ G+TK+L VYGP +K + K ++V IG +++ +
Sbjct: 54 FGSSCFYSL----GNTKILTTVYGPNPDSKYATYSKGKVFLDVK-SLNINTIGASDRQRD 108
Query: 112 IILKRTL----QSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHL 167
+K L +I +L P + + ++ DDG L + AL+ A I MK +
Sbjct: 109 DDIKSLLIECISNIILLEKYPQCSIKIKCLIIQDDGGCLSATLTCISLALIKAQIQMKDI 168
Query: 168 AVAI-----CCCSAESGYCILDPTKLEEQ 191
++I C + Y ++D +EE+
Sbjct: 169 IISININSIICPVTKKMYHLVDLDGMEEK 197
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.135 0.418 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 273 273 0.0010 114 3 11 22 0.46 33
32 0.40 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 41
No. of states in DFA: 612 (65 KB)
Total size of DFA: 218 KB (2120 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 22.15u 0.15s 22.30t Elapsed: 00:00:01
Total cpu time: 22.16u 0.15s 22.31t Elapsed: 00:00:01
Start: Sat May 11 09:07:27 2013 End: Sat May 11 09:07:28 2013