BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024064
(273 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224141741|ref|XP_002324223.1| predicted protein [Populus trichocarpa]
gi|222865657|gb|EEF02788.1| predicted protein [Populus trichocarpa]
Length = 243
Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust.
Identities = 205/272 (75%), Positives = 225/272 (82%), Gaps = 30/272 (11%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFC 60
ME DR DGR+P+QLRPL+C+ ++LHRAHGSASWSQG
Sbjct: 1 MESDRDDGRSPSQLRPLSCARNVLHRAHGSASWSQG------------------------ 36
Query: 61 YWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQS 120
DTKVLAAVYGPKAGTKKNENPEKA IEVIWKP+TGQIGK EKE+E+ILKRTLQS
Sbjct: 37 ------DTKVLAAVYGPKAGTKKNENPEKACIEVIWKPKTGQIGKLEKEFEMILKRTLQS 90
Query: 121 ICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGY 180
ICILT+NPNTTTS+I+QVV+DDGALL CAINAACAALVDAGIPMKHLAVAICCC AE GY
Sbjct: 91 ICILTLNPNTTTSIIVQVVNDDGALLVCAINAACAALVDAGIPMKHLAVAICCCLAEGGY 150
Query: 181 CILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYF 240
ILDPTKLEEQKM+GF YLVFPNS++SVLPEGSS V+GEPMEHGIITSVTHG MSV++Y
Sbjct: 151 VILDPTKLEEQKMRGFTYLVFPNSVVSVLPEGSSHVEGEPMEHGIITSVTHGVMSVEEYL 210
Query: 241 HCLERGRAASAKLSDFLRRSLQSKLPGDLSKA 272
CLERGRAAS KLSDFLRRSLQS+LP D SKA
Sbjct: 211 KCLERGRAASTKLSDFLRRSLQSQLPSDSSKA 242
>gi|449511723|ref|XP_004164036.1| PREDICTED: exosome complex exonuclease RRP46 homolog [Cucumis
sativus]
Length = 243
Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust.
Identities = 195/272 (71%), Positives = 220/272 (80%), Gaps = 30/272 (11%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFC 60
ME+DR DGR PNQLRPLACSC++L+RAHGSASWSQG
Sbjct: 1 MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQG------------------------ 36
Query: 61 YWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQS 120
DTKVLAAVYGPKAGTKKNENPEKASIEVIWKP+TGQIGK E+E E+ILKRTLQS
Sbjct: 37 ------DTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQS 90
Query: 121 ICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGY 180
ICILT NPNTTTS+I+QV+HDDGALLPCAINA+CAALVDAGIP+KHLAVAI CC +E+GY
Sbjct: 91 ICILTTNPNTTTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSENGY 150
Query: 181 CILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYF 240
ILDPTK+EE+KMK +LVFPN+ +SV+PEGS+ GEP+EHGIITSVT GAMSVDDY
Sbjct: 151 VILDPTKIEEEKMKASVHLVFPNAPVSVVPEGSTQGVGEPLEHGIITSVTQGAMSVDDYI 210
Query: 241 HCLERGRAASAKLSDFLRRSLQSKLPGDLSKA 272
HCLERGRAA+ K+S FLRRSLQ +LP D SKA
Sbjct: 211 HCLERGRAATTKMSAFLRRSLQPQLPMDSSKA 242
>gi|449465139|ref|XP_004150286.1| PREDICTED: exosome complex exonuclease RRP46 homolog [Cucumis
sativus]
Length = 243
Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust.
Identities = 194/272 (71%), Positives = 220/272 (80%), Gaps = 30/272 (11%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFC 60
ME+DR DGR PNQLRPLACSC++L+RAHGSASWSQG
Sbjct: 1 MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQG------------------------ 36
Query: 61 YWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQS 120
DTKVLAAVYGPKAGTKKNENPEKASIEVIWKP+TGQIGK E+E E+ILKRTLQS
Sbjct: 37 ------DTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQS 90
Query: 121 ICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGY 180
ICILT NPNTTTS+I+QV+HDDGALLPCAINA+CAALVDAGIP+KHLAVAI CC +E+GY
Sbjct: 91 ICILTTNPNTTTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSENGY 150
Query: 181 CILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYF 240
ILDPTK+EE+KMK +LVFPN+ +SV+PEGS+ GEP+EHGIITSVT GAMSVDDY
Sbjct: 151 VILDPTKIEEEKMKASVHLVFPNAPVSVVPEGSTQGVGEPLEHGIITSVTQGAMSVDDYI 210
Query: 241 HCLERGRAASAKLSDFLRRSLQSKLPGDLSKA 272
HCLERGRAA+ K+S FLRRSLQ +LP + SKA
Sbjct: 211 HCLERGRAATTKMSAFLRRSLQPQLPMNSSKA 242
>gi|297819162|ref|XP_002877464.1| hypothetical protein ARALYDRAFT_485002 [Arabidopsis lyrata subsp.
lyrata]
gi|297323302|gb|EFH53723.1| hypothetical protein ARALYDRAFT_485002 [Arabidopsis lyrata subsp.
lyrata]
Length = 242
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 193/272 (70%), Positives = 214/272 (78%), Gaps = 31/272 (11%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFC 60
ME+DR DGR PNQLRPLACS +ILHR HGSASWSQG
Sbjct: 1 MEIDREDGRTPNQLRPLACSRNILHRPHGSASWSQG------------------------ 36
Query: 61 YWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQS 120
DTKVLAAVYGPKAGTKKNEN EKA EVIWKP+TGQIGK EKEYE+I+KRT+QS
Sbjct: 37 ------DTKVLAAVYGPKAGTKKNENAEKACFEVIWKPKTGQIGKVEKEYEMIMKRTIQS 90
Query: 121 ICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGY 180
IC+LT+NPNTTTSVIIQVVHDDG+LLPCAINAACAALVDAGIPMKHLAVAICCC A++GY
Sbjct: 91 ICVLTVNPNTTTSVIIQVVHDDGSLLPCAINAACAALVDAGIPMKHLAVAICCCLADNGY 150
Query: 181 CILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYF 240
+LDP KLEE+KM FAYLVFPN+ LSVLPEGSS+ +GEP+EHGIITSVTHG MSVDDYF
Sbjct: 151 LVLDPNKLEEKKMTAFAYLVFPNTTLSVLPEGSSVAEGEPVEHGIITSVTHGVMSVDDYF 210
Query: 241 HCLERGRAASAKLSDFLRRSLQSKLPGDLSKA 272
C+E GRAA+A LS F R++ Q D SKA
Sbjct: 211 LCVENGRAATASLSAFFRKNFQQS-QKDSSKA 241
>gi|15231368|ref|NP_190207.1| exosome complex component RRP46 [Arabidopsis thaliana]
gi|79314404|ref|NP_001030817.1| exosome complex component RRP46 [Arabidopsis thaliana]
gi|79314427|ref|NP_001030818.1| exosome complex component RRP46 [Arabidopsis thaliana]
gi|79314448|ref|NP_001030819.1| exosome complex component RRP46 [Arabidopsis thaliana]
gi|145332769|ref|NP_001078250.1| exosome complex component RRP46 [Arabidopsis thaliana]
gi|334185757|ref|NP_001190019.1| exosome complex component RRP46 [Arabidopsis thaliana]
gi|7799009|emb|CAB90948.1| putative protein [Arabidopsis thaliana]
gi|27808554|gb|AAO24557.1| At3g46210 [Arabidopsis thaliana]
gi|110736314|dbj|BAF00127.1| hypothetical protein [Arabidopsis thaliana]
gi|222423954|dbj|BAH19939.1| AT3G46210 [Arabidopsis thaliana]
gi|222424492|dbj|BAH20201.1| AT3G46210 [Arabidopsis thaliana]
gi|332644608|gb|AEE78129.1| exosome complex component RRP46 [Arabidopsis thaliana]
gi|332644609|gb|AEE78130.1| exosome complex component RRP46 [Arabidopsis thaliana]
gi|332644610|gb|AEE78131.1| exosome complex component RRP46 [Arabidopsis thaliana]
gi|332644611|gb|AEE78132.1| exosome complex component RRP46 [Arabidopsis thaliana]
gi|332644612|gb|AEE78133.1| exosome complex component RRP46 [Arabidopsis thaliana]
gi|332644613|gb|AEE78134.1| exosome complex component RRP46 [Arabidopsis thaliana]
Length = 239
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 189/262 (72%), Positives = 210/262 (80%), Gaps = 30/262 (11%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFC 60
ME+DR DGR PNQLRPLACS +ILHR HGSASWSQG
Sbjct: 1 MEIDREDGRTPNQLRPLACSRNILHRPHGSASWSQG------------------------ 36
Query: 61 YWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQS 120
DTKVLAAVYGPKAGTKKNEN EKA EVIWKP++GQIGK EKEYE+ILKRT+QS
Sbjct: 37 ------DTKVLAAVYGPKAGTKKNENAEKACFEVIWKPKSGQIGKVEKEYEMILKRTIQS 90
Query: 121 ICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGY 180
IC+LT+NPNTTTSVIIQVVHDDG+LLPCAINAACAALVDAGIPMKHLAVAICCC AE+GY
Sbjct: 91 ICVLTVNPNTTTSVIIQVVHDDGSLLPCAINAACAALVDAGIPMKHLAVAICCCLAENGY 150
Query: 181 CILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYF 240
+LDP KLEE+KM FAYLVFPN+ LSVLPEGSS+ +GEP+EHGIITS+THG MSVDDYF
Sbjct: 151 LVLDPNKLEEKKMTAFAYLVFPNTTLSVLPEGSSVAEGEPVEHGIITSITHGVMSVDDYF 210
Query: 241 HCLERGRAASAKLSDFLRRSLQ 262
C+E GRAA+A LS F R++ Q
Sbjct: 211 LCVENGRAATASLSAFFRKNFQ 232
>gi|224089018|ref|XP_002308603.1| predicted protein [Populus trichocarpa]
gi|222854579|gb|EEE92126.1| predicted protein [Populus trichocarpa]
Length = 243
Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust.
Identities = 190/259 (73%), Positives = 211/259 (81%), Gaps = 30/259 (11%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFC 60
ME+DR DGR+P+QLRPL+CS ++LHRAHGSASWSQG
Sbjct: 1 MEIDRDDGRSPSQLRPLSCSHNVLHRAHGSASWSQG------------------------ 36
Query: 61 YWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQS 120
DTKV AAVYGPKAGTKKNENPEKA +EVIWKP+TGQIGK E+EYE+ILKRTLQS
Sbjct: 37 ------DTKVSAAVYGPKAGTKKNENPEKACVEVIWKPKTGQIGKLEREYEMILKRTLQS 90
Query: 121 ICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGY 180
ICILT+NPNTTTS+I+Q V+DDGALL CAINAACAALVDA IPMKHLAVAICCC A+ GY
Sbjct: 91 ICILTLNPNTTTSIIVQFVNDDGALLVCAINAACAALVDARIPMKHLAVAICCCLADVGY 150
Query: 181 CILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYF 240
ILDPTKLEEQKMKGFAYLVFPNS+LSVL EGSSLV+GE EHGIITSVTHG M V++Y
Sbjct: 151 VILDPTKLEEQKMKGFAYLVFPNSVLSVLLEGSSLVEGESTEHGIITSVTHGVMPVEEYL 210
Query: 241 HCLERGRAASAKLSDFLRR 259
C+ERGRAASAKLSDFLR+
Sbjct: 211 KCVERGRAASAKLSDFLRK 229
>gi|225429944|ref|XP_002281273.1| PREDICTED: exosome complex exonuclease RRP46 homolog [Vitis
vinifera]
Length = 245
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 199/272 (73%), Positives = 219/272 (80%), Gaps = 30/272 (11%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFC 60
ME+ R DGR NQLRPLACS +IL+RAHGSASWSQG
Sbjct: 3 MEIGRDDGRTANQLRPLACSRNILNRAHGSASWSQG------------------------ 38
Query: 61 YWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQS 120
DTKVLAAVYGPKAGTKKNENPEKA IEV+WKP+TGQIGKPEKEYE+ILKRTL+S
Sbjct: 39 ------DTKVLAAVYGPKAGTKKNENPEKACIEVVWKPKTGQIGKPEKEYEVILKRTLKS 92
Query: 121 ICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGY 180
IC+L INPNTTTS+IIQVV DDGALLPCAINAACAALVDA IP+KHLAVAICCC ESGY
Sbjct: 93 ICLLNINPNTTTSIIIQVVSDDGALLPCAINAACAALVDAAIPLKHLAVAICCCLTESGY 152
Query: 181 CILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYF 240
ILDPTK+EEQKMK FAYLVFPNS +S++PEGSS ++GE MEHGIITSVTHG MSVDDY
Sbjct: 153 VILDPTKVEEQKMKAFAYLVFPNSAISIIPEGSSHMEGELMEHGIITSVTHGVMSVDDYL 212
Query: 241 HCLERGRAASAKLSDFLRRSLQSKLPGDLSKA 272
HCLERG+AAS K+S FLRRSLQS+ P D S+A
Sbjct: 213 HCLERGQAASTKMSAFLRRSLQSQAPNDSSRA 244
>gi|296081851|emb|CBI20856.3| unnamed protein product [Vitis vinifera]
Length = 243
Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust.
Identities = 199/272 (73%), Positives = 219/272 (80%), Gaps = 30/272 (11%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFC 60
ME+ R DGR NQLRPLACS +IL+RAHGSASWSQG
Sbjct: 1 MEIGRDDGRTANQLRPLACSRNILNRAHGSASWSQG------------------------ 36
Query: 61 YWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQS 120
DTKVLAAVYGPKAGTKKNENPEKA IEV+WKP+TGQIGKPEKEYE+ILKRTL+S
Sbjct: 37 ------DTKVLAAVYGPKAGTKKNENPEKACIEVVWKPKTGQIGKPEKEYEVILKRTLKS 90
Query: 121 ICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGY 180
IC+L INPNTTTS+IIQVV DDGALLPCAINAACAALVDA IP+KHLAVAICCC ESGY
Sbjct: 91 ICLLNINPNTTTSIIIQVVSDDGALLPCAINAACAALVDAAIPLKHLAVAICCCLTESGY 150
Query: 181 CILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYF 240
ILDPTK+EEQKMK FAYLVFPNS +S++PEGSS ++GE MEHGIITSVTHG MSVDDY
Sbjct: 151 VILDPTKVEEQKMKAFAYLVFPNSAISIIPEGSSHMEGELMEHGIITSVTHGVMSVDDYL 210
Query: 241 HCLERGRAASAKLSDFLRRSLQSKLPGDLSKA 272
HCLERG+AAS K+S FLRRSLQS+ P D S+A
Sbjct: 211 HCLERGQAASTKMSAFLRRSLQSQAPNDSSRA 242
>gi|356568370|ref|XP_003552384.1| PREDICTED: exosome complex exonuclease RRP46 homolog [Glycine max]
Length = 243
Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust.
Identities = 190/272 (69%), Positives = 213/272 (78%), Gaps = 30/272 (11%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFC 60
ME DR DGR PNQLRPL CSCSILHR+HGSASW+QG
Sbjct: 1 METDRPDGRTPNQLRPLVCSCSILHRSHGSASWAQG------------------------ 36
Query: 61 YWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQS 120
+TKVLAAVYGPKAGTKK+ENPEKASIEVIWKP+TGQIGK EKEYE+ILKRTL+S
Sbjct: 37 ------ETKVLAAVYGPKAGTKKSENPEKASIEVIWKPKTGQIGKVEKEYEMILKRTLES 90
Query: 121 ICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGY 180
ICI TI PNTTTSVI+QVVHDDGALLPCAINAACAALVDAGIP+KHLAVAICC +SG
Sbjct: 91 ICIRTIYPNTTTSVIVQVVHDDGALLPCAINAACAALVDAGIPLKHLAVAICCSVTDSGC 150
Query: 181 CILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYF 240
ILDPTK EE+KMK F LVFPN+I+SVLPEGS EPM HGI+TS+T GAMSVDDY
Sbjct: 151 IILDPTKDEEEKMKAFINLVFPNTIVSVLPEGSLQAGSEPMAHGIMTSITQGAMSVDDYL 210
Query: 241 HCLERGRAASAKLSDFLRRSLQSKLPGDLSKA 272
HCLERGRAASA+LS+F+R++++ K + SKA
Sbjct: 211 HCLERGRAASARLSEFVRKNIELKSTSEASKA 242
>gi|356532014|ref|XP_003534569.1| PREDICTED: exosome complex exonuclease RRP46 homolog [Glycine max]
Length = 243
Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust.
Identities = 192/272 (70%), Positives = 213/272 (78%), Gaps = 30/272 (11%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFC 60
ME DR DGR PNQLRPLACSCSILHRAHGSASW+QG
Sbjct: 1 METDRPDGRTPNQLRPLACSCSILHRAHGSASWAQG------------------------ 36
Query: 61 YWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQS 120
+TKVLAAVYGPKAGTKKNENPEKASIEVIWKP+TGQIGK EKEYE+ILKRTL+S
Sbjct: 37 ------ETKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLEKEYEMILKRTLES 90
Query: 121 ICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGY 180
ICI TI PNTTTSVI+QVVHDDGALLPCAINAAC ALVDAGIP+KHLAVAICC +SG
Sbjct: 91 ICIRTIYPNTTTSVIVQVVHDDGALLPCAINAACTALVDAGIPLKHLAVAICCSVTDSGC 150
Query: 181 CILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYF 240
ILDPTK EE+KMK + LVFPN+I+SVLPE SS V EPM HGI+TSVT GAMSVDDY
Sbjct: 151 IILDPTKEEEEKMKAYINLVFPNTIVSVLPERSSQVGSEPMAHGIMTSVTQGAMSVDDYL 210
Query: 241 HCLERGRAASAKLSDFLRRSLQSKLPGDLSKA 272
HCL+RGRAASA+LS+F+R+++ K + SKA
Sbjct: 211 HCLDRGRAASARLSEFVRKNIGPKSTCEASKA 242
>gi|356565547|ref|XP_003551001.1| PREDICTED: LOW QUALITY PROTEIN: exosome complex exonuclease RRP46
homolog [Glycine max]
Length = 244
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 193/273 (70%), Positives = 214/273 (78%), Gaps = 31/273 (11%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFC 60
ME DR DGR PNQLRPLA SCSILHRAHGSASW+QG
Sbjct: 1 METDRPDGRTPNQLRPLAYSCSILHRAHGSASWAQG------------------------ 36
Query: 61 YWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQS 120
+TKVLAAVYGPKAGTKKNENPEKASIEVIWKP+TGQIGK EKEYE+ILKRTL+S
Sbjct: 37 ------ETKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKMEKEYEMILKRTLES 90
Query: 121 ICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGY 180
ICI TI PNTTTSVI+QVVHDDGALLPCAINAACAALVDAGIP+KHLAVAICC +SG
Sbjct: 91 ICIRTIYPNTTTSVIVQVVHDDGALLPCAINAACAALVDAGIPLKHLAVAICCSVTDSGC 150
Query: 181 CILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSL-VQGEPMEHGIITSVTHGAMSVDDY 239
ILDPTK EE+KMK FA LVFPN+I+SVLPE SL V EPME+GI+TSVT GAMSV+DY
Sbjct: 151 IILDPTKDEEEKMKAFANLVFPNTIVSVLPEXRSLQVGSEPMENGIMTSVTQGAMSVNDY 210
Query: 240 FHCLERGRAASAKLSDFLRRSLQSKLPGDLSKA 272
HCLERGRAA A LS+F+R+++ +K + SKA
Sbjct: 211 LHCLERGRAACASLSEFVRKNIGTKSTSEPSKA 243
>gi|388511449|gb|AFK43786.1| unknown [Lotus japonicus]
Length = 243
Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust.
Identities = 186/272 (68%), Positives = 210/272 (77%), Gaps = 30/272 (11%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFC 60
ME+DRADGR+PNQLRPLACS S+LHRAHGSASW+QG
Sbjct: 1 MEIDRADGRSPNQLRPLACSRSVLHRAHGSASWAQG------------------------ 36
Query: 61 YWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQS 120
+TKV AAVYGPKAGTKKNENPEKASIEV WKP TGQIG+ EK YE+ILKRTL+S
Sbjct: 37 ------ETKVFAAVYGPKAGTKKNENPEKASIEVTWKPNTGQIGQVEKGYEMILKRTLES 90
Query: 121 ICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGY 180
ICI +I PNTTTSVI+QVVHDDGALLPCAINAACAALVDAGIP++HLAVAICC A++
Sbjct: 91 ICIRSIYPNTTTSVIVQVVHDDGALLPCAINAACAALVDAGIPLRHLAVAICCSVADNSC 150
Query: 181 CILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYF 240
ILDPTK EE+K K FAYLVFPN+ +SVLPEGSS EPM HGIITSVT GAMSVDDY
Sbjct: 151 IILDPTKQEEEKAKAFAYLVFPNTNISVLPEGSSQGGSEPMAHGIITSVTQGAMSVDDYL 210
Query: 241 HCLERGRAASAKLSDFLRRSLQSKLPGDLSKA 272
CLERGRA S +LS+FLR++++ K + SKA
Sbjct: 211 RCLERGRATSERLSEFLRKNIEPKSTSEASKA 242
>gi|357507241|ref|XP_003623909.1| Exosome complex exonuclease RRP46 [Medicago truncatula]
gi|355498924|gb|AES80127.1| Exosome complex exonuclease RRP46 [Medicago truncatula]
Length = 243
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 180/272 (66%), Positives = 211/272 (77%), Gaps = 30/272 (11%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFC 60
ME+DR DGR+PNQLRPLACS S+LHRAHGSA+W+QG
Sbjct: 1 MEIDRPDGRSPNQLRPLACSHSVLHRAHGSATWAQG------------------------ 36
Query: 61 YWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQS 120
+TKVLAAVYGPKAGTKKNENPEKASIEVIWKP TG +G+ ++EYE+ILK+TL+S
Sbjct: 37 ------ETKVLAAVYGPKAGTKKNENPEKASIEVIWKPNTGHVGQADREYEMILKKTLES 90
Query: 121 ICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGY 180
ICI TI PNTTTSVI+QVVHDDGALLPCAINAACAALVDAGIP++HLAVAICC ++
Sbjct: 91 ICIRTIYPNTTTSVIVQVVHDDGALLPCAINAACAALVDAGIPLRHLAVAICCSVTDNNS 150
Query: 181 CILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYF 240
ILDP+K EE+K K FAYLVFPN+ +SV+PE SS V +PM HGIITSVTHGAMSVDDY
Sbjct: 151 IILDPSKKEEEKSKAFAYLVFPNTTVSVVPEKSSQVGNDPMAHGIITSVTHGAMSVDDYL 210
Query: 241 HCLERGRAASAKLSDFLRRSLQSKLPGDLSKA 272
HCLERGRA + +LS+FLR+++ K + SKA
Sbjct: 211 HCLERGRATTQRLSEFLRKNIAPKSTREASKA 242
>gi|124360770|gb|ABD33427.2| Peptidase S8 and S53, subtilisin, kexin, sedolisin; 3
exoribonuclease [Medicago truncatula]
Length = 241
Score = 362 bits (929), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 179/272 (65%), Positives = 209/272 (76%), Gaps = 32/272 (11%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFC 60
ME+DR DGR+PNQLRPLACS S+LHRAHGSA+W+QG
Sbjct: 1 MEIDRPDGRSPNQLRPLACSHSVLHRAHGSATWAQG------------------------ 36
Query: 61 YWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQS 120
+TKVLAAVYGPKAGTKKNENPEKASIEVIWKP TG +G+ ++EYE+ILK+TL+S
Sbjct: 37 ------ETKVLAAVYGPKAGTKKNENPEKASIEVIWKPNTGHVGQADREYEMILKKTLES 90
Query: 121 ICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGY 180
ICI TI PNTTTSVI VVHDDGALLPCAINAACAALVDAGIP++HLAVAICC ++
Sbjct: 91 ICIRTIYPNTTTSVI--VVHDDGALLPCAINAACAALVDAGIPLRHLAVAICCSVTDNNS 148
Query: 181 CILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYF 240
ILDP+K EE+K K FAYLVFPN+ +SV+PE SS V +PM HGIITSVTHGAMSVDDY
Sbjct: 149 IILDPSKKEEEKSKAFAYLVFPNTTVSVVPEKSSQVGNDPMAHGIITSVTHGAMSVDDYL 208
Query: 241 HCLERGRAASAKLSDFLRRSLQSKLPGDLSKA 272
HCLERGRA + +LS+FLR+++ K + SKA
Sbjct: 209 HCLERGRATTQRLSEFLRKNIAPKSTREASKA 240
>gi|255550900|ref|XP_002516498.1| Exosome complex exonuclease RRP46, putative [Ricinus communis]
gi|223544318|gb|EEF45839.1| Exosome complex exonuclease RRP46, putative [Ricinus communis]
Length = 211
Score = 351 bits (901), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 175/236 (74%), Positives = 190/236 (80%), Gaps = 30/236 (12%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFC 60
M++DR DGR PNQLRPLACS ++L+RAHGSASW QG
Sbjct: 1 MDIDRDDGRTPNQLRPLACSRNVLNRAHGSASWCQG------------------------ 36
Query: 61 YWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQS 120
DTKVLAAVYGPK GTKKNENPEKA IEVIWKP+TGQIGK EKEYE+ILKRTLQ+
Sbjct: 37 ------DTKVLAAVYGPKPGTKKNENPEKACIEVIWKPKTGQIGKVEKEYEMILKRTLQT 90
Query: 121 ICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGY 180
IC+LTINPNTTTSVI+QVVHDDGALL CAINAACAALVDAGIPMKHLAVAICCC +ESGY
Sbjct: 91 ICVLTINPNTTTSVIVQVVHDDGALLTCAINAACAALVDAGIPMKHLAVAICCCLSESGY 150
Query: 181 CILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSV 236
ILDPTKLEEQKMKGF YLVFPNS+ SVL + S LV+GEPM+HGIITSVTHG MSV
Sbjct: 151 VILDPTKLEEQKMKGFTYLVFPNSVHSVLQKESVLVEGEPMDHGIITSVTHGVMSV 206
>gi|242032199|ref|XP_002463494.1| hypothetical protein SORBIDRAFT_01g000760 [Sorghum bicolor]
gi|241917348|gb|EER90492.1| hypothetical protein SORBIDRAFT_01g000760 [Sorghum bicolor]
Length = 239
Score = 315 bits (808), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 156/264 (59%), Positives = 193/264 (73%), Gaps = 31/264 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
RADGRNPNQLRP +C+ + LHRAHGSA W+QG
Sbjct: 6 RADGRNPNQLRPFSCTGNPLHRAHGSARWAQG---------------------------- 37
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICIL 124
DT VLAAVYGPK GT+K ENPEKASIEV+WKP+TGQIG+ E+EYE+ LKRTLQSIC+L
Sbjct: 38 --DTVVLAAVYGPKPGTRKGENPEKASIEVVWKPKTGQIGRQEREYEMTLKRTLQSICLL 95
Query: 125 TINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILD 184
T++PNTTTSV++QVV DDG+LLPCAINA+CAAL AGIPMKHLAVAICC ++G ILD
Sbjct: 96 TVHPNTTTSVVLQVVGDDGSLLPCAINASCAALAFAGIPMKHLAVAICCGVMDNGAVILD 155
Query: 185 PTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLE 244
+ EEQ+ K FA+LVFPNS SV + + + E E G+I+ +THG MS D+YF+C+E
Sbjct: 156 TSTAEEQQAKSFAHLVFPNSRKSVDSK-DPMQKDEESERGLISCITHGTMSEDNYFNCIE 214
Query: 245 RGRAASAKLSDFLRRSLQSKLPGD 268
RG AAS+K+SDF+R++LQ + GD
Sbjct: 215 RGIAASSKISDFMRKTLQKEASGD 238
>gi|284793943|pdb|3HKM|A Chain A, Crystal Structure Of Rice(Oryza Sativa) Rrp46
gi|284793944|pdb|3HKM|B Chain B, Crystal Structure Of Rice(Oryza Sativa) Rrp46
gi|284793945|pdb|3HKM|C Chain C, Crystal Structure Of Rice(Oryza Sativa) Rrp46
Length = 246
Score = 315 bits (806), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 161/269 (59%), Positives = 192/269 (71%), Gaps = 31/269 (11%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFC 60
ME RADGRNPNQLRP +C+ + L RAHGSA W+QG
Sbjct: 1 MEESRADGRNPNQLRPFSCTRNPLDRAHGSARWAQG------------------------ 36
Query: 61 YWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQS 120
DT VLAAVYGPK GT+K ENPEKASIEV+WKP TGQIGK EKEYE+ LKRTLQS
Sbjct: 37 ------DTIVLAAVYGPKPGTRKGENPEKASIEVVWKPMTGQIGKQEKEYEMTLKRTLQS 90
Query: 121 ICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGY 180
IC+LT++PNTTTSVI+QVV +DG+LLPCAINA CAALV AGIP+KHLAVAI C E G
Sbjct: 91 ICLLTVHPNTTTSVILQVVGNDGSLLPCAINACCAALVFAGIPLKHLAVAIGCGVLEDGE 150
Query: 181 CILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYF 240
ILD K EEQ++K FA+LVFPNS S + + + E E G+ITS+THG MS +DYF
Sbjct: 151 VILDTNKAEEQQLKSFAHLVFPNSRKSASSKEPNQKE-EDSERGLITSITHGVMSEEDYF 209
Query: 241 HCLERGRAASAKLSDFLRRSLQSKLPGDL 269
C+ERG AAS+++SDF+R +LQ + PGD+
Sbjct: 210 SCIERGLAASSRISDFMRTTLQKQAPGDV 238
>gi|115456671|ref|NP_001051936.1| Os03g0854200 [Oryza sativa Japonica Group]
gi|75243278|sp|Q84T68.2|EXOS5_ORYSJ RecName: Full=Exosome complex exonuclease RRP46 homolog; AltName:
Full=Exosome component 5; AltName: Full=Ribosomal
RNA-processing protein 46; Short=oRrp46
gi|57222448|gb|AAO66540.2| putative exosome component [Oryza sativa Japonica Group]
gi|108712165|gb|ABF99960.1| 3' exoribonuclease family, domain 1 containing protein, expressed
[Oryza sativa Japonica Group]
gi|113550407|dbj|BAF13850.1| Os03g0854200 [Oryza sativa Japonica Group]
gi|215697262|dbj|BAG91256.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 238
Score = 315 bits (806), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 161/269 (59%), Positives = 192/269 (71%), Gaps = 31/269 (11%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFC 60
ME RADGRNPNQLRP +C+ + L RAHGSA W+QG
Sbjct: 1 MEESRADGRNPNQLRPFSCTRNPLDRAHGSARWAQG------------------------ 36
Query: 61 YWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQS 120
DT VLAAVYGPK GT+K ENPEKASIEV+WKP TGQIGK EKEYE+ LKRTLQS
Sbjct: 37 ------DTIVLAAVYGPKPGTRKGENPEKASIEVVWKPMTGQIGKQEKEYEMTLKRTLQS 90
Query: 121 ICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGY 180
IC+LT++PNTTTSVI+QVV +DG+LLPCAINA CAALV AGIP+KHLAVAI C E G
Sbjct: 91 ICLLTVHPNTTTSVILQVVGNDGSLLPCAINACCAALVFAGIPLKHLAVAIGCGVLEDGE 150
Query: 181 CILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYF 240
ILD K EEQ++K FA+LVFPNS S + + + E E G+ITS+THG MS +DYF
Sbjct: 151 VILDTNKAEEQQLKSFAHLVFPNSRKSASSKEPNQKE-EDSERGLITSITHGVMSEEDYF 209
Query: 241 HCLERGRAASAKLSDFLRRSLQSKLPGDL 269
C+ERG AAS+++SDF+R +LQ + PGD+
Sbjct: 210 SCIERGLAASSRISDFMRTTLQKQAPGDV 238
>gi|218194134|gb|EEC76561.1| hypothetical protein OsI_14380 [Oryza sativa Indica Group]
Length = 238
Score = 311 bits (797), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 160/269 (59%), Positives = 191/269 (71%), Gaps = 31/269 (11%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFC 60
ME RADGRNPNQLRP +C+ + L RAHGSA W+QG
Sbjct: 1 MEESRADGRNPNQLRPFSCTRNPLDRAHGSARWAQG------------------------ 36
Query: 61 YWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQS 120
DT VLAAVYGPK GT+K ENPEKASIEV+WKP TGQIGK EKEYE+ LKRTLQS
Sbjct: 37 ------DTIVLAAVYGPKPGTRKGENPEKASIEVVWKPMTGQIGKQEKEYEMTLKRTLQS 90
Query: 121 ICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGY 180
IC+LT++PNTTTSVI+QVV +DG+LLPCAINA CAALV AGIP+KHLAVAI C E G
Sbjct: 91 ICLLTVHPNTTTSVILQVVGNDGSLLPCAINACCAALVFAGIPLKHLAVAIGCGVLEDGE 150
Query: 181 CILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYF 240
ILD K EEQ++K FA+LVFPNS S + + + E E G+ITS+THG MS +DYF
Sbjct: 151 VILDTNKAEEQQLKSFAHLVFPNSRKSASSKEPNQKE-EDSERGLITSITHGVMSEEDYF 209
Query: 241 HCLERGRAASAKLSDFLRRSLQSKLPGDL 269
C+ERG AAS+++S F+R +LQ + PGD+
Sbjct: 210 SCIERGLAASSRISHFMRTTLQKQAPGDV 238
>gi|226504202|ref|NP_001146469.1| uncharacterized protein LOC100280057 [Zea mays]
gi|219887423|gb|ACL54086.1| unknown [Zea mays]
gi|413932389|gb|AFW66940.1| exosome complex exonuclease RRP46 [Zea mays]
Length = 240
Score = 311 bits (797), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 152/264 (57%), Positives = 192/264 (72%), Gaps = 31/264 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
RADGRNPNQLRP C+ + LHRAHGSA W+QG
Sbjct: 7 RADGRNPNQLRPFTCTGNPLHRAHGSARWAQG---------------------------- 38
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICIL 124
DT VLAAVYGPK+GT+K ENPEKASIEV+WKP+TGQIG+ E+EYE+ LKRTLQSIC+L
Sbjct: 39 --DTVVLAAVYGPKSGTRKGENPEKASIEVVWKPKTGQIGRQEREYEMTLKRTLQSICLL 96
Query: 125 TINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILD 184
T++PNTTTSV++QVV DDG+L+ CAINA+CAAL AGIPMKHLAVAI C ++G ILD
Sbjct: 97 TVHPNTTTSVVLQVVGDDGSLMSCAINASCAALAFAGIPMKHLAVAISCGVMDNGVVILD 156
Query: 185 PTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLE 244
++ EEQ+ + FA+LVFPNS SV + ++ + E E G+IT +THGAMS DDYF+C+E
Sbjct: 157 TSRAEEQQARSFAHLVFPNSRKSVESKDTTQ-RDEESERGLITCITHGAMSEDDYFNCIE 215
Query: 245 RGRAASAKLSDFLRRSLQSKLPGD 268
RG AS+++SDF+R++LQ + D
Sbjct: 216 RGVMASSRISDFMRKTLQKEASRD 239
>gi|195629840|gb|ACG36561.1| exosome complex exonuclease RRP46 [Zea mays]
Length = 240
Score = 308 bits (790), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 152/264 (57%), Positives = 191/264 (72%), Gaps = 31/264 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
RADGRNPNQLRP C+ + LHRAHGSA W+QG
Sbjct: 7 RADGRNPNQLRPFTCTGNPLHRAHGSARWAQG---------------------------- 38
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICIL 124
DT VLAAVYGPK GT+K ENPEKASIEV+WKP+TGQIG+ E+EYE+ LKRTLQSIC+L
Sbjct: 39 --DTVVLAAVYGPKPGTRKGENPEKASIEVVWKPKTGQIGRQEREYEMTLKRTLQSICLL 96
Query: 125 TINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILD 184
T++PNTTTSV++QVV DDG+L+ CAINA+CAAL AGIPMKHLAVAI C ++G ILD
Sbjct: 97 TVHPNTTTSVVLQVVGDDGSLMSCAINASCAALAFAGIPMKHLAVAISCGVMDNGVVILD 156
Query: 185 PTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLE 244
++ EEQ+ + FA+LVFPNS SV + + + E E G+IT +THGAMS DDYF+C+E
Sbjct: 157 TSRAEEQQARSFAHLVFPNSRKSVESKDPTQ-RDEESERGLITCITHGAMSEDDYFNCIE 215
Query: 245 RGRAASAKLSDFLRRSLQSKLPGD 268
RG AS+++SDF+R++LQ ++ D
Sbjct: 216 RGVMASSRISDFMRKTLQKEVSRD 239
>gi|356554181|ref|XP_003545427.1| PREDICTED: exosome complex exonuclease RRP46 homolog [Glycine max]
Length = 237
Score = 303 bits (777), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 162/263 (61%), Positives = 186/263 (70%), Gaps = 37/263 (14%)
Query: 1 MEVDRADGRNPNQLRPLACSCS--ILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCY 58
ME DR D + PNQLRPLACSCS ILHR+HGSASW+Q
Sbjct: 1 METDRPDSQTPNQLRPLACSCSCSILHRSHGSASWAQR---------------------- 38
Query: 59 FCYWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTL 118
+TKVLAAVYGPKAGTKKNENP+KASI+VIWKP+TGQIGK EKEYE+ILKRTL
Sbjct: 39 --------ETKVLAAVYGPKAGTKKNENPKKASIKVIWKPKTGQIGKVEKEYEMILKRTL 90
Query: 119 QSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAES 178
+SICI TI PNTTT VI+Q+VHDDG LLPCAINAAC ALVDA IP+KHL VAICC +S
Sbjct: 91 ESICIRTIYPNTTTLVIVQIVHDDGVLLPCAINAACVALVDARIPLKHLVVAICCSITDS 150
Query: 179 GYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMS-VD 237
G ILDPTK +E+KMK F LVFPN+I+SVLPEGS E M HGI+TS+T GAMS +
Sbjct: 151 GCIILDPTKDQEEKMKAFINLVFPNTIVSVLPEGSLQEGSETMAHGIMTSITQGAMSGLG 210
Query: 238 DYFHCLERGRAASAKLSDFLRRS 260
+ C RA S + +D + S
Sbjct: 211 GFVAC----RALSQRNTDPTKAS 229
>gi|357117089|ref|XP_003560307.1| PREDICTED: exosome complex exonuclease RRP46 homolog [Brachypodium
distachyon]
Length = 238
Score = 303 bits (776), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 155/266 (58%), Positives = 188/266 (70%), Gaps = 31/266 (11%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFC 60
ME R DGRN NQLRP C+ + L RAHGSA WSQG
Sbjct: 1 MEGSRGDGRNANQLRPFTCARNPLDRAHGSARWSQG------------------------ 36
Query: 61 YWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQS 120
DT VLAAVYGP+ GT+K ENPEKASIEV+WKP+TGQ GK EK YE+ LKRTLQS
Sbjct: 37 ------DTVVLAAVYGPRPGTRKGENPEKASIEVVWKPKTGQSGKQEKGYEMTLKRTLQS 90
Query: 121 ICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGY 180
IC+LT++PNTTTSVI+QV+ DDG+LLPCAINA+CAALV AGIP+KHLAVAI C +G
Sbjct: 91 ICLLTVHPNTTTSVILQVMGDDGSLLPCAINASCAALVFAGIPLKHLAVAIGCGVLGNGA 150
Query: 181 CILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYF 240
ILD +K EEQ++K FA+LVFPNS SV + S + E E G++TS+THG MS D+YF
Sbjct: 151 VILDTSKAEEQELKSFAHLVFPNSRKSVESK-ESQQKDEHSERGLLTSITHGVMSEDEYF 209
Query: 241 HCLERGRAASAKLSDFLRRSLQSKLP 266
C+ERG AAS+++SDF+R +LQ + P
Sbjct: 210 SCIERGLAASSRISDFMRTTLQKQTP 235
>gi|257062723|gb|ACV40374.1| ribosomal RNA-processing protein 46 [Hordeum vulgare subsp.
vulgare]
Length = 240
Score = 293 bits (750), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 149/255 (58%), Positives = 182/255 (71%), Gaps = 31/255 (12%)
Query: 12 NQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVL 71
NQLR +C+ + L RAHGSA W+QG DT VL
Sbjct: 14 NQLRAYSCTRNPLERAHGSARWAQG------------------------------DTVVL 43
Query: 72 AAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTT 131
AAVYGP+ GT+K ENPEKAS+EV+WKP+TGQIG+ EKEYE+ LKRTLQSIC+LT++PNTT
Sbjct: 44 AAVYGPRPGTRKGENPEKASLEVVWKPKTGQIGRQEKEYEMTLKRTLQSICLLTVHPNTT 103
Query: 132 TSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQ 191
TS+I+QV+ DDG+LLPCAINA+CAALV AGIPMKHLAVAI C G ILD +K EEQ
Sbjct: 104 TSIILQVMGDDGSLLPCAINASCAALVFAGIPMKHLAVAIGCGVLPDGSVILDTSKAEEQ 163
Query: 192 KMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASA 251
++K FA+LVFPNS LSV + G+ E G+ITS+THG MS DDYF+C+ERG AASA
Sbjct: 164 QLKSFAHLVFPNSSLSVDVKEPQQKDGQS-ERGLITSITHGVMSEDDYFNCIERGLAASA 222
Query: 252 KLSDFLRRSLQSKLP 266
++SDF+R +LQ P
Sbjct: 223 RISDFMRTTLQKHTP 237
>gi|222626193|gb|EEE60325.1| hypothetical protein OsJ_13416 [Oryza sativa Japonica Group]
Length = 248
Score = 286 bits (733), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 153/279 (54%), Positives = 188/279 (67%), Gaps = 41/279 (14%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFC 60
ME RADGRNPNQLRP +C+ + L RAHGSA W+QG
Sbjct: 1 MEESRADGRNPNQLRPFSCTRNPLDRAHGSARWAQG------------------------ 36
Query: 61 YWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQS 120
DT VLAAVYGPK GT+K ENPEKASIEV+WKP TGQIGK EKEYE+ LKRTLQS
Sbjct: 37 ------DTIVLAAVYGPKPGTRKGENPEKASIEVVWKPMTGQIGKQEKEYEMTLKRTLQS 90
Query: 121 ICILTINPNTTTSVIIQVVHDDGALLPC-----AINAACA-----ALVDAGIPMKHLAVA 170
IC+LT++PNTTTSVI+QVV +DG++ C +I + C +LV AGIP+KHLAVA
Sbjct: 91 ICLLTVHPNTTTSVILQVVGNDGSVSFCRNVLLSIVSGCLLDYEHSLVFAGIPLKHLAVA 150
Query: 171 ICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVT 230
I C E G ILD K EEQ++K FA+LVFPNS S + + + E E G+ITS+T
Sbjct: 151 IGCGVLEDGEVILDTNKAEEQQLKSFAHLVFPNSRKSASSKEPNQKE-EDSERGLITSIT 209
Query: 231 HGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGDL 269
HG MS +DYF C+ERG AAS+++SDF+R +LQ + PGD+
Sbjct: 210 HGVMSEEDYFSCIERGLAASSRISDFMRTTLQKQAPGDV 248
>gi|168045848|ref|XP_001775388.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673333|gb|EDQ59858.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 256
Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 127/265 (47%), Positives = 172/265 (64%), Gaps = 30/265 (11%)
Query: 4 DRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWV 63
+RADGR+ +QLRPL+ S +L RAHGSA+WSQ
Sbjct: 18 ERADGRSASQLRPLSLSRGLLTRAHGSATWSQE--------------------------- 50
Query: 64 GSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICI 123
+T VLAAVYGPK K EN E+A IEV+W+ ++G G EK+ E++++R+L+ I +
Sbjct: 51 ---NTTVLAAVYGPKPAAMKKENAERAIIEVVWRAKSGLSGSYEKDAEVVVRRSLEYIIL 107
Query: 124 LTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCIL 183
++PNT SVI+QV++DDG+LL CA+NAACAALVDAGIP+ L A+ C G L
Sbjct: 108 TALHPNTAISVILQVINDDGSLLACAMNAACAALVDAGIPLNGLLSAVSCGVTHDGQVFL 167
Query: 184 DPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCL 243
DPTK EEQK K + VFP+ LS +PE + V GEP+E+GI+TSVT GAM V++YF C+
Sbjct: 168 DPTKPEEQKCKAYVSFVFPSRRLSAVPELPADVDGEPVEYGILTSVTRGAMEVEEYFSCV 227
Query: 244 ERGRAASAKLSDFLRRSLQSKLPGD 268
E RAA+AK+S+F R S++ L G+
Sbjct: 228 ENCRAAAAKVSEFSRSSIEQSLKGN 252
>gi|413932390|gb|AFW66941.1| hypothetical protein ZEAMMB73_899121 [Zea mays]
gi|413932391|gb|AFW66942.1| hypothetical protein ZEAMMB73_899121 [Zea mays]
Length = 122
Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 84/141 (59%), Positives = 101/141 (71%), Gaps = 30/141 (21%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
RADGRNPNQLRP C+ + LHRAHGSA W+QG
Sbjct: 7 RADGRNPNQLRPFTCTGNPLHRAHGSARWAQG---------------------------- 38
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICIL 124
DT VLAAVYGPK+GT+K ENPEKASIEV+WKP+TGQIG+ E+EYE+ LKRTLQSIC+L
Sbjct: 39 --DTVVLAAVYGPKSGTRKGENPEKASIEVVWKPKTGQIGRQEREYEMTLKRTLQSICLL 96
Query: 125 TINPNTTTSVIIQVVHDDGAL 145
T++PNTTTSV++QVV DDG++
Sbjct: 97 TVHPNTTTSVVLQVVGDDGSV 117
>gi|224031563|gb|ACN34857.1| unknown [Zea mays]
gi|413932392|gb|AFW66943.1| hypothetical protein ZEAMMB73_899121 [Zea mays]
Length = 149
Score = 163 bits (413), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 80/136 (58%), Positives = 96/136 (70%), Gaps = 30/136 (22%)
Query: 4 DRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWV 63
RADGRNPNQLRP C+ + LHRAHGSA W+QG
Sbjct: 6 SRADGRNPNQLRPFTCTGNPLHRAHGSARWAQG--------------------------- 38
Query: 64 GSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICI 123
DT VLAAVYGPK+GT+K ENPEKASIEV+WKP+TGQIG+ E+EYE+ LKRTLQSIC+
Sbjct: 39 ---DTVVLAAVYGPKSGTRKGENPEKASIEVVWKPKTGQIGRQEREYEMTLKRTLQSICL 95
Query: 124 LTINPNTTTSVIIQVV 139
LT++PNTTTSV++QV+
Sbjct: 96 LTVHPNTTTSVVLQVM 111
>gi|320165922|gb|EFW42821.1| exosome component Rrp46 [Capsaspora owczarzaki ATCC 30864]
Length = 227
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 90/269 (33%), Positives = 132/269 (49%), Gaps = 53/269 (19%)
Query: 3 VDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYW 62
V RADGR PNQLR L+ ++L RA GS+ +SQ
Sbjct: 2 VTRADGRMPNQLRELSIEHAVLSRADGSSRFSQR-------------------------- 35
Query: 63 VGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSIC 122
DT L AVYGP E +KA+++ +++P+TG G + E IL++ L+ +
Sbjct: 36 ----DTSALTAVYGPAEVKSSKELLDKATVQTVFRPKTGLAGVDDHVCEAILRQALEPVI 91
Query: 123 ILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC------SA 176
T NP T+ +VI+QV+HDDGALL CA+N+A AL+DAG+PM + A+ C +
Sbjct: 92 QRTANPRTSITVIVQVMHDDGALLACALNSASMALIDAGVPMSAVLAAVTCAWLPAADGS 151
Query: 177 ESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSV 236
+LDPT E+ A F E I+ S T G ++V
Sbjct: 152 SERRLLLDPTLEEQTAATSIATFAF-----------------ESTNQEIVFSSTEGQLTV 194
Query: 237 DDYFHCLERGRAASAKLSDFLRRSLQSKL 265
D+YF+ +E + A+A + F+R SL+ K
Sbjct: 195 DEYFYTIEMAQKAAANVLAFMRLSLERKF 223
>gi|297825843|ref|XP_002880804.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297326643|gb|EFH57063.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 140
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 69/80 (86%), Positives = 76/80 (95%)
Query: 66 GDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILT 125
GDTKVLAAVYGPKAGTKKNEN EKA EVIWKP+TGQIGK EKEYE+ILKRT+QSIC+LT
Sbjct: 30 GDTKVLAAVYGPKAGTKKNENDEKACFEVIWKPKTGQIGKVEKEYEMILKRTMQSICVLT 89
Query: 126 INPNTTTSVIIQVVHDDGAL 145
+NPNTTTSVIIQVVHDDG++
Sbjct: 90 VNPNTTTSVIIQVVHDDGSI 109
>gi|291226757|ref|XP_002733360.1| PREDICTED: exosome component 5-like, partial [Saccoglossus
kowalevskii]
Length = 198
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 82/244 (33%), Positives = 124/244 (50%), Gaps = 48/244 (19%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFC 60
M RAD N +LR +C ++L R GSA++ QG
Sbjct: 1 MTSQRADCGNL-ELRSQSCEQNLLSRPDGSATYCQG------------------------ 35
Query: 61 YWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQS 120
DT V+ AVYGP + E +KA++EVI+KP+ G G EK E +++ T ++
Sbjct: 36 ------DTSVIVAVYGPAEVKQSKEFLDKATLEVIFKPKVGIPGCSEKFQERLIRNTCET 89
Query: 121 ICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGY 180
I + ++P ++ ++IIQV+H+ G+LL C +N+ C AL+DAG+PM L A+ C + G
Sbjct: 90 IVLTALHPRSSINIIIQVMHNAGSLLSCCVNSTCMALLDAGLPMSCLVAAVTCSLSCDGD 149
Query: 181 CILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYF 240
ILDPT +E++ K VF E ++ IITS THG S+ Y+
Sbjct: 150 IILDPTSQQEKEAKAILTFVF-----------------ESRDNEIITSNTHGIYSIKQYY 192
Query: 241 HCLE 244
C+E
Sbjct: 193 SCVE 196
>gi|260791023|ref|XP_002590540.1| hypothetical protein BRAFLDRAFT_124523 [Branchiostoma floridae]
gi|229275734|gb|EEN46551.1| hypothetical protein BRAFLDRAFT_124523 [Branchiostoma floridae]
Length = 219
Score = 133 bits (334), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 123/256 (48%), Gaps = 47/256 (18%)
Query: 14 LRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLAA 73
LR C ++L R GSAS QG DT VLAA
Sbjct: 11 LRSFECEQNLLSRPDGSASVRQG------------------------------DTSVLAA 40
Query: 74 VYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTS 133
VYGP E +KA+++VI+KP+ G G EK E +L+ T +S+ + ++P + +
Sbjct: 41 VYGPGEVKMSEEIIDKATLKVIFKPKIGLPGCAEKLQERLLRNTCESVVLAILHPRSGVN 100
Query: 134 VIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKM 193
+++QV+ D G+LL C INAAC ALVD+ +PMK L A+ C E G +LDP +E++
Sbjct: 101 IVLQVIQDSGSLLSCCINAACMALVDSAVPMKCLVSAVTCAVMEEGRIVLDPDSKQEKES 160
Query: 194 KGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKL 253
F + E+ ++T T G + + Y CL AAS +
Sbjct: 161 SAVLTFAF-----------------DSRENNVVTCSTKGCYTPEKYQECLSACGAASKNI 203
Query: 254 SDFLRRSLQSKLPGDL 269
S F R++++ ++ +L
Sbjct: 204 SSFFRQAVERRMSKEL 219
>gi|156389595|ref|XP_001635076.1| predicted protein [Nematostella vectensis]
gi|156222166|gb|EDO43013.1| predicted protein [Nematostella vectensis]
Length = 232
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/253 (30%), Positives = 124/253 (49%), Gaps = 47/253 (18%)
Query: 13 QLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLA 72
+LR + C +L +A GS+ ++QG DT+V+A
Sbjct: 14 ELRAMFCEHGLLDKADGSSKFAQG------------------------------DTQVMA 43
Query: 73 AVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTT 132
A YGP E ++A++EVI++P+ G G EK E I++ + + I + ++P +
Sbjct: 44 AAYGPVEVKLNKELIDRATLEVIFRPKIGIPGCSEKLVEGIIRNSCEPIVLTALHPRASL 103
Query: 133 SVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQK 192
++++QVV + G+LL CA+NAAC A++DAG PM+ + I C E +LDPT +E+K
Sbjct: 104 TIVVQVVQNSGSLLSCAVNAACLAMMDAGFPMRCMMCGITCAITEQDELVLDPTLEQERK 163
Query: 193 MKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAK 252
VF + + ++TS T G+ VD Y CL +AA
Sbjct: 164 ATAVLTFVF-----------------DSVNQNLLTSSTKGSFDVDQYNKCLAASKAAMGN 206
Query: 253 LSDFLRRSLQSKL 265
+ F R+S++ KL
Sbjct: 207 ILAFYRQSVERKL 219
>gi|426242933|ref|XP_004015323.1| PREDICTED: exosome complex component RRP46 [Ovis aries]
Length = 235
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 85/257 (33%), Positives = 123/257 (47%), Gaps = 48/257 (18%)
Query: 9 RNPN-QLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGD 67
R P LR AC ++L R GSAS+ QG D
Sbjct: 22 RGPGCSLRHFACEQNLLSRPDGSASFLQG------------------------------D 51
Query: 68 TKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTIN 127
T VLA VYGP E KA++EVI +P+TG G EK E +++ T +++ + ++
Sbjct: 52 TSVLAGVYGPAEVKISKEIFNKATLEVILRPKTGLPGVAEKSRERLIRNTCEAVVLGALH 111
Query: 128 PNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTK 187
P T+ +V++QVV D G+LL C +NAAC ALVDAG+PM+ L + C G +LDPT
Sbjct: 112 PRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVPMRALFCGVTCALDSDGTLMLDPTA 171
Query: 188 LEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGR 247
+E++ + A L F + +E ++ S T G S + CL +
Sbjct: 172 KQEKEAR--AVLTFAL---------------DSVERKLLMSTTKGLYSDAELQQCLAAAQ 214
Query: 248 AASAKLSDFLRRSLQSK 264
AS + F R SLQ +
Sbjct: 215 TASTHVFRFYRESLQRR 231
>gi|444518498|gb|ELV12200.1| Exosome complex component RRP46 [Tupaia chinensis]
Length = 235
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 123/257 (47%), Gaps = 48/257 (18%)
Query: 9 RNPN-QLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGD 67
R P LR AC ++L R GSAS+ QG D
Sbjct: 22 RGPGCSLRHFACEQNLLSRPDGSASFLQG------------------------------D 51
Query: 68 TKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTIN 127
T VLA VYGP E KA++EVI +P+ G G EK E +++ T +++ + ++
Sbjct: 52 TSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLPGVAEKTRERLIRNTCEAVVLGALH 111
Query: 128 PNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTK 187
P T+ +V++QVV D G+LL C +NA C ALVDAG+PM+ L + C G +LDPT
Sbjct: 112 PRTSITVVLQVVSDAGSLLACCLNATCMALVDAGVPMQALFCGVTCTLDSDGALVLDPTA 171
Query: 188 LEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGR 247
+E++ + A L F + +E ++ S T G S ++ CL +
Sbjct: 172 KQEKEAR--AVLTFAL---------------DSVERKLLMSTTKGLYSNAEFHQCLAAAQ 214
Query: 248 AASAKLSDFLRRSLQSK 264
AAS + F R SLQ +
Sbjct: 215 AASQHVFRFYRESLQRR 231
>gi|66809981|ref|XP_638714.1| hypothetical protein DDB_G0284053 [Dictyostelium discoideum AX4]
gi|60467336|gb|EAL65367.1| hypothetical protein DDB_G0284053 [Dictyostelium discoideum AX4]
Length = 237
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/264 (29%), Positives = 127/264 (48%), Gaps = 48/264 (18%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR N +RP+ L++A GSA +SQ
Sbjct: 7 RNDGRCENSIRPVESEQGSLNKADGSAKFSQD---------------------------- 38
Query: 65 SGDTKVLAAVYGP-KAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICI 123
+KVLAAVYGP + + + E K+ +EV + P G +KE E+++K ++S+ +
Sbjct: 39 --KSKVLAAVYGPIEVNSARKEKILKSYVEVTFTPAFGNTNYIDKEKELLIKNAVESMIL 96
Query: 124 LTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCIL 183
T+ P T SVI+QV DDG+++ CAINAAC AL+DAGI M L ++ C G +
Sbjct: 97 TTLYPRTQISVILQVFSDDGSIVSCAINAACLALLDAGIEMNGLLGSVTLCFNNDGSIYV 156
Query: 184 DPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCL 243
DP+ EE + K A F + + I+ S T G ++ D YF L
Sbjct: 157 DPSTEEENQSKAIAIYSFSS-----------------INKNIVLSKTIGTLTEDQYFKGL 199
Query: 244 ERGRAASAKLSDFLRRSLQSKLPG 267
++ + + F++ ++++++ G
Sbjct: 200 DKASESCDLIISFIKLAVKNRIMG 223
>gi|347582673|ref|NP_001231590.1| exosome component 5 [Sus scrofa]
Length = 235
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 125/257 (48%), Gaps = 48/257 (18%)
Query: 9 RNPN-QLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGD 67
R+P+ LR AC ++L R GSAS+ QG D
Sbjct: 22 RSPSCTLRHFACEQNLLSRPDGSASFLQG------------------------------D 51
Query: 68 TKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTIN 127
T VLA VYGP + E KA++EVI +P+ G G EK E +++ T +++ + ++
Sbjct: 52 TSVLAGVYGPAEVKVRKEIFNKATLEVILRPKIGLPGVAEKSRERLIRNTCEAVVLGALH 111
Query: 128 PNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTK 187
P T+ +V++QV+ D G+LL C +NAAC ALVDAG+PM+ L + C G +LDPT
Sbjct: 112 PRTSITVVLQVISDAGSLLACCLNAACMALVDAGVPMRALFCGVTCALDSDGTFMLDPTA 171
Query: 188 LEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGR 247
+E++ + A L F + +E ++ S T G S + CL +
Sbjct: 172 KQEKEAR--AVLTFAL---------------DSVERKLLMSTTKGLYSDAELQQCLAAAQ 214
Query: 248 AASAKLSDFLRRSLQSK 264
AS + F R SLQ +
Sbjct: 215 TASQHVFRFYRESLQRR 231
>gi|126329382|ref|XP_001372178.1| PREDICTED: exosome complex component RRP46-like [Monodelphis
domestica]
Length = 237
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 82/251 (32%), Positives = 121/251 (48%), Gaps = 47/251 (18%)
Query: 14 LRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLAA 73
LR AC ++L R GSAS+ QG DT VL
Sbjct: 30 LRHFACEQNLLSRPDGSASFLQG------------------------------DTSVLVG 59
Query: 74 VYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTS 133
VYGP E KA++EVI KP+ G G EK E +++ T +++ + T++P T+ +
Sbjct: 60 VYGPAEVKVSKEIFNKATLEVILKPKIGLPGVAEKSRERLIRTTCEAVVLGTLHPRTSIT 119
Query: 134 VIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKM 193
V++Q+V D G+LL C +NAAC ALVDAG+P++ L + C G +LDPT +E++
Sbjct: 120 VVLQIVSDAGSLLACCLNAACLALVDAGVPLRALFCGVTCALDLDGGLVLDPTAKQEKEA 179
Query: 194 KGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKL 253
+ A L F + E ++ S T G SV ++ CL + AS +
Sbjct: 180 R--AILTFAL---------------DSTEQKLLMSTTKGLYSVAEFQQCLAAAQHASLHI 222
Query: 254 SDFLRRSLQSK 264
F R SLQ +
Sbjct: 223 FRFYRDSLQRR 233
>gi|330791335|ref|XP_003283749.1| hypothetical protein DICPUDRAFT_85962 [Dictyostelium purpureum]
gi|325086372|gb|EGC39763.1| hypothetical protein DICPUDRAFT_85962 [Dictyostelium purpureum]
Length = 233
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/273 (29%), Positives = 131/273 (47%), Gaps = 55/273 (20%)
Query: 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCY 61
E R +GR QLR + S+L++A GSA +SQ
Sbjct: 6 EFRRLNGRTQGQLRSMESEQSLLNKADGSAKFSQN------------------------- 40
Query: 62 WVGSGDTKVLAAVYGP-KAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQS 120
T VLAAVYGP + + + E K+ +EV + P G +KE E+++K ++S
Sbjct: 41 -----KTSVLAAVYGPIEVNSARKEKILKSYVEVTFTPALGNTTYLDKEKELLVKNAVES 95
Query: 121 ICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESG- 179
+ + T++P T SVIIQV DDG+++ C+INAAC AL+DAGI M L +I + +
Sbjct: 96 VILTTLHPRTQVSVIIQVYSDDGSIVSCSINAACLALLDAGIEMNGLIGSITLMNEDDDE 155
Query: 180 -----YCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAM 234
I+DP EE K A F ++ + I+ S T G +
Sbjct: 156 DNNKCLMIVDPDLNEENNSKAMAIFAFSSN-----------------SNNIVMSKTIGTL 198
Query: 235 SVDDYFHCLERGRAASAKLSDFLRRSLQSKLPG 267
+ D YF CL+ R + ++ +++ ++++++ G
Sbjct: 199 TEDQYFECLKAARGCDSIIA-YMKLAVKNRIMG 230
>gi|348543409|ref|XP_003459176.1| PREDICTED: exosome complex component RRP46-like [Oreochromis
niloticus]
Length = 219
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/256 (29%), Positives = 122/256 (47%), Gaps = 47/256 (18%)
Query: 14 LRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLAA 73
LR C S+L R GSAS+ QG DT V+A
Sbjct: 11 LREFGCEQSLLSRPDGSASFVQG------------------------------DTSVMAG 40
Query: 74 VYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTS 133
VYGP E ++A++EV+ +P+ G E+ E ++ T ++ +LT++P ++ +
Sbjct: 41 VYGPAEVKVSKEIYDRATLEVLVQPKVGLPSVRERSQEQCVRETCEASLLLTLHPRSSLT 100
Query: 134 VIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKM 193
+I+QV+HDDG+LL C +NAAC AL+DAG+PM L + C + G I DPT +E++
Sbjct: 101 LILQVLHDDGSLLSCCLNAACMALMDAGLPMSCLFCGVTCAISTDGQIITDPTAAQEKES 160
Query: 194 KGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKL 253
+ ++ +H ++ S T G+ SV + C+ + AS K+
Sbjct: 161 RALMTFAIDSA-----------------KHSVLMSSTKGSFSVHELQQCIAVSQKASEKI 203
Query: 254 SDFLRRSLQSKLPGDL 269
F R S++ + L
Sbjct: 204 FQFYRDSVKRRYSKSL 219
>gi|391224436|ref|NP_001038817.2| exosome complex exonuclease RRP46 [Danio rerio]
Length = 230
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 109/199 (54%), Gaps = 17/199 (8%)
Query: 66 GDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILT 125
GDT +LA VYGP E ++A++EV+ +P+ G E+ E ++ T ++ +LT
Sbjct: 44 GDTSILAGVYGPAEVKVSKEIYDRATVEVLIQPKMGLPSVRERAREQCVRETCEAALLLT 103
Query: 126 INPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDP 185
++P ++ +VI+QVVHDDG+LL C +NAAC AL+DAG+PM L ++ C ++ G I DP
Sbjct: 104 LHPRSSLTVILQVVHDDGSLLSCCLNAACMALMDAGLPMSRLFCSVTCAISKEGQIITDP 163
Query: 186 TKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLER 245
T +E++ + ++ E ++ S T G+ SV + C+
Sbjct: 164 TARQEKESRALLTFAIDSN-----------------ERNVLMSSTTGSFSVQELQQCIAI 206
Query: 246 GRAASAKLSDFLRRSLQSK 264
+ AS ++ F R S++ +
Sbjct: 207 SQKASEQIFQFYRDSVKRR 225
>gi|221119375|ref|XP_002161086.1| PREDICTED: exosome complex component RRP46-like [Hydra
magnipapillata]
Length = 221
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 105/196 (53%), Gaps = 17/196 (8%)
Query: 66 GDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILT 125
G TKV++AVYGP E +KA+I I KP+ G EK E I+ +T + I +
Sbjct: 23 GQTKVISAVYGPVEVKMNKEITDKATIICILKPKIGMSAVKEKVMEKIVAKTCEQAIIAS 82
Query: 126 INPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDP 185
++P + V++Q+VHD G+LL C INAAC +LV AG+PM+++ V++CC + ++DP
Sbjct: 83 LHPRSAIQVVLQIVHDSGSLLSCLINAACLSLVHAGLPMRNMIVSVCCAVTNNDEYLVDP 142
Query: 186 TKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLER 245
T E Q K F E I++ T G +V+ YF CL+
Sbjct: 143 TIAEIQDCKCVLTFAF-----------------ESKNLDIVSIFTSGLFTVEQYFQCLQL 185
Query: 246 GRAASAKLSDFLRRSL 261
+A++ + +F R+S+
Sbjct: 186 AKASAPDILNFQRQSV 201
>gi|348552426|ref|XP_003462029.1| PREDICTED: exosome complex component RRP46-like [Cavia porcellus]
Length = 240
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 79/251 (31%), Positives = 119/251 (47%), Gaps = 47/251 (18%)
Query: 14 LRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLAA 73
LR AC ++L R GSA++ QG DT VLA
Sbjct: 33 LRHFACEQNLLSRPDGSATFLQG------------------------------DTSVLAG 62
Query: 74 VYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTS 133
VYGP E KA++EVI +P+ G G EK E +++ T +++ + ++P T+ +
Sbjct: 63 VYGPAEVKVSKEIFNKATLEVILRPKIGLPGVAEKSRERLIRNTCEAVVLGALHPRTSIT 122
Query: 134 VIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKM 193
V++QV+ D G+LL C +N AC ALVDAGIPM+ L + C G +LDPT +E++
Sbjct: 123 VVLQVISDAGSLLACCLNVACMALVDAGIPMRALFCGVTCALDSDGTLVLDPTAKQEKEA 182
Query: 194 KGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKL 253
+ A L F + ++ ++ S T G S + CL + AS +
Sbjct: 183 R--AVLTFAL---------------DSVDRKLLMSTTKGLYSDAELQQCLAAAQTASQHV 225
Query: 254 SDFLRRSLQSK 264
F R SLQ +
Sbjct: 226 FRFYRESLQRR 236
>gi|112419436|gb|AAI22388.1| Exosome component 5 [Danio rerio]
gi|182891334|gb|AAI64315.1| Exosc5 protein [Danio rerio]
Length = 218
Score = 123 bits (308), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 108/199 (54%), Gaps = 17/199 (8%)
Query: 66 GDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILT 125
GDT +LA VYGP E ++A++EV+ +P+ G E+ E ++ T ++ +LT
Sbjct: 32 GDTSILAGVYGPAEVKVSKEIYDRATVEVLIQPKMGLPSVRERAREQCVRETCEAALLLT 91
Query: 126 INPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDP 185
++P ++ +VI+QVVHDDG+LL C +NAAC AL+DAG+PM L ++ C ++ G I DP
Sbjct: 92 LHPRSSLTVILQVVHDDGSLLSCCLNAACMALMDAGLPMSRLFCSVTCAISKEGQIITDP 151
Query: 186 TKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLER 245
T +E+ + ++ E ++ S T G+ SV + C+
Sbjct: 152 TARQEKVSRALLTFAIDSN-----------------ERNVLMSSTTGSFSVQELQQCIAI 194
Query: 246 GRAASAKLSDFLRRSLQSK 264
+ AS ++ F R S++ +
Sbjct: 195 SQKASEQIFQFYRDSVKRR 213
>gi|405978848|gb|EKC43209.1| Exosome complex exonuclease RRP46 [Crassostrea gigas]
Length = 215
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 108/203 (53%), Gaps = 17/203 (8%)
Query: 63 VGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSIC 122
V GDT V +AVYGP E +KA+I+V++KP++G G EK E ++ + +++
Sbjct: 27 VSQGDTCVTSAVYGPGEVKVTKELLDKATIDVVYKPKSGLPGCAEKLLERTIRNSCETVI 86
Query: 123 ILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCI 182
+ ++P ++ S+ +Q + + G+LL C IN+ C AL+D+G+ M++L A+ C ++G I
Sbjct: 87 LGNLHPRSSISITVQEIQNRGSLLSCCINSTCMALLDSGVSMRYLMAAVSCAINDNGSII 146
Query: 183 LDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHC 242
+DP L+EQ VF N +G+IT G ++D + C
Sbjct: 147 MDPNTLQEQSTVAMLTFVFENC-----------------NYGVITVSAKGCYTLDQFQQC 189
Query: 243 LERGRAASAKLSDFLRRSLQSKL 265
L + R AS + F + S+ KL
Sbjct: 190 LSKCRDASKYVFQFFKDSISKKL 212
>gi|281200843|gb|EFA75059.1| hypothetical protein PPL_11677 [Polysphondylium pallidum PN500]
Length = 233
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/264 (29%), Positives = 128/264 (48%), Gaps = 48/264 (18%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R D RN NQ+R + ++L++A GSA +S
Sbjct: 3 RIDKRNNNQIRSIESELALLNKADGSAKFSLD---------------------------- 34
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICIL 124
++ VLAA+YGP + E KA++EV++ P +G KE E +++ ++S+ +
Sbjct: 35 --NSSVLAAIYGPVEVNPRKEKISKATVEVVFTPDSGNQNYQTKEQESLIRNAIESVIMT 92
Query: 125 TINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILD 184
++P T S+IIQV DG+++ C+INAAC AL+DAGI + L +I G LD
Sbjct: 93 MLHPRTLISIIIQVYSTDGSIVSCSINAACLALLDAGIELNSLIASISLSFNSDGQIYLD 152
Query: 185 PTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLE 244
PT EE + K A F NS L ++ SS GIIT + L+
Sbjct: 153 PTMKEENESKATAIYAF-NSQLKLMMIKSS---------GIITEQQNQ--------EALQ 194
Query: 245 RGRAASAKLSDFLRRSLQSKLPGD 268
R++ ++ ++R ++++++ GD
Sbjct: 195 LARSSCERILAYIRTAVKTRIMGD 218
>gi|291412161|ref|XP_002722356.1| PREDICTED: exosome component 5-like [Oryctolagus cuniculus]
Length = 235
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/254 (31%), Positives = 120/254 (47%), Gaps = 48/254 (18%)
Query: 9 RNPN-QLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGD 67
R P LR AC ++L R GSAS+ QG D
Sbjct: 22 RGPGCSLRHFACEQNLLSRPDGSASFLQG------------------------------D 51
Query: 68 TKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTIN 127
T VLA VYGP E KA++EVI +P+ G G EK E +++ T +++ + ++
Sbjct: 52 TSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLPGVAEKNRERMIRNTCEAVVLGALH 111
Query: 128 PNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTK 187
P T+ +V++Q+V D G+LL C +NAAC ALVDAG+PM+ L + C G +LDPT
Sbjct: 112 PRTSITVVLQIVSDAGSLLACCLNAACMALVDAGVPMRALFCGVTCALDSDGTLVLDPTA 171
Query: 188 LEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGR 247
+E++ + A L F + ++ ++ S T G S + CL +
Sbjct: 172 KQEKEAR--AVLTFAL---------------DSVDRKLLMSTTKGLYSDAELQQCLAAAQ 214
Query: 248 AASAKLSDFLRRSL 261
AS + F R SL
Sbjct: 215 TASQHVFRFYRDSL 228
>gi|298710388|emb|CBJ25452.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 230
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 92/269 (34%), Positives = 138/269 (51%), Gaps = 51/269 (18%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFC 60
ME R DGR NQ+RPLA IL+RA GSA RF+Q
Sbjct: 1 MEETRRDGRRANQIRPLAAEQGILNRADGSA------RFVQ------------------- 35
Query: 61 YWVGSGDTKVLAAVYGPK-AGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQ 119
G+T VLAAVYGP A + + E E A+++V +KP +G + E E +L+R+L+
Sbjct: 36 -----GNTSVLAAVYGPAPAKSLRMERSEGATLDVSFKPESGITSSADAESEALLRRSLE 90
Query: 120 SICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC--SAE 177
+ + + P T SVIIQV+ DDGA+L A+NAA AL++AG+ M +A+++ CC +
Sbjct: 91 EVVLRSRYPRTVVSVIIQVIVDDGAVLSAALNAATMALLNAGVEMTGMALSVTCCITATV 150
Query: 178 SGYCI-LDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSV 236
SG + LDP K EE ++++ L G G+++ G+MS
Sbjct: 151 SGRSVLLDPCKAEEIDAA-------ATAVVATLSAGG----------GVLSCHAVGSMSQ 193
Query: 237 DDYFHCLERGRAASAKLSDFLRRSLQSKL 265
++YF C E + + F+R S + K+
Sbjct: 194 EEYFACCEAASLGTTAVRSFVRLSAEQKV 222
>gi|194675249|ref|XP_001790575.1| PREDICTED: exosome complex component RRP46 [Bos taurus]
gi|297485653|ref|XP_002695041.1| PREDICTED: exosome complex component RRP46 [Bos taurus]
gi|296477725|tpg|DAA19840.1| TPA: exosome component 5-like [Bos taurus]
Length = 242
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 83/258 (32%), Positives = 121/258 (46%), Gaps = 54/258 (20%)
Query: 14 LRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLAA 73
LR AC ++L R GSAS+ QG DT VLA
Sbjct: 28 LRHFACEQNLLSRPDGSASFLQG------------------------------DTSVLAG 57
Query: 74 VYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTS 133
VYGP E KA++EVI +P+TG G EK E +++ T +++ + ++P T+ +
Sbjct: 58 VYGPAEVKISKEIFNKATLEVILRPKTGLPGVAEKSRERLIRNTCEAVVLGALHPRTSIT 117
Query: 134 VIIQVVHDDGA-------LLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPT 186
V++QVV D G+ LL C +NAAC ALVDAG+PM+ L + C G +LDPT
Sbjct: 118 VVLQVVSDAGSKLNHCLWLLACCLNAACMALVDAGVPMRALFCGVTCALDSDGTLMLDPT 177
Query: 187 KLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERG 246
+E++ + A L F + +E ++ S T G S + CL
Sbjct: 178 AKQEKEAR--AVLTFAL---------------DSVERKLLMSTTKGLYSDTELQQCLAAA 220
Query: 247 RAASAKLSDFLRRSLQSK 264
+ AS + F R SLQ +
Sbjct: 221 QTASTHVFRFYRESLQRR 238
>gi|413942153|gb|AFW74802.1| hypothetical protein ZEAMMB73_831356 [Zea mays]
Length = 421
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 67/161 (41%), Positives = 83/161 (51%), Gaps = 58/161 (36%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
RADG+NPNQLR C+ ++LHRAHG A W+QG
Sbjct: 7 RADGQNPNQLRLFTCTGNLLHRAHGCARWAQG---------------------------- 38
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQI--------------------- 103
VLA VYGPK GT + PEKASIE +WKPRTGQI
Sbjct: 39 --GIVVLATVYGPKPGTVRGRTPEKASIEAVWKPRTGQIDTPLFPSSSFCPTAVRVTGSL 96
Query: 104 -------GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQ 137
G+ ++EYE+ LKRTLQSIC+LT++ N TTSV++Q
Sbjct: 97 KWRVVFVGRQDREYEMTLKRTLQSICLLTVHANATTSVVLQ 137
>gi|384498296|gb|EIE88787.1| hypothetical protein RO3G_13498 [Rhizopus delemar RA 99-880]
Length = 246
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 83/264 (31%), Positives = 128/264 (48%), Gaps = 28/264 (10%)
Query: 3 VDRADGRNPN-QLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCY 61
V R D R N Q R L+ S +IL RA GSA + G + QT + H Y C
Sbjct: 2 VTRPDRRADNKQTRTLSASQNILSRADGSAKFEFGIKRNQTYCYLH---------AYICL 52
Query: 62 WVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSI 121
G+ T V+ +V GP ++E ++A++EVI +P G EK E L+ T + I
Sbjct: 53 QKGT--TSVICSVSGPVEVQMRDEKLDEATVEVIVRPAKGVRATKEKLIENTLRTTFEPI 110
Query: 122 CILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC-SAESGY 180
+ + P T + +QV+ DDG++L +INA AL+DAGIP+K++A A+ C ++
Sbjct: 111 ILGGMMPRTLIQITVQVIKDDGSVLAASINAIALALLDAGIPLKYMAAAVTCMFDNKTCE 170
Query: 181 CILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYF 240
+LDPT +E Q K F N+ ++ S + G + +Y
Sbjct: 171 VVLDPTAVELQDAKSVHTFAFDNT---------------RKTSNVLLSDSDGIFNEAEYS 215
Query: 241 HCLERGRAASAKLSDFLRRSLQSK 264
C E A ++ FLR +++SK
Sbjct: 216 SCQEACFEAVGQIHTFLRTAVESK 239
>gi|410910298|ref|XP_003968627.1| PREDICTED: exosome complex component RRP46-like [Takifugu rubripes]
Length = 219
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 77/256 (30%), Positives = 125/256 (48%), Gaps = 47/256 (18%)
Query: 14 LRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLAA 73
LR +C S+L R GS+S+ QG DT VLA
Sbjct: 11 LRDFSCEQSLLSRPDGSSSFMQG------------------------------DTSVLAG 40
Query: 74 VYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTS 133
VYGP E ++A++EV+ +P+ G E+ E ++ T ++ +L+++P ++ +
Sbjct: 41 VYGPAEVKVSKEIYDRATLEVLIQPKVGLPSVKERSQEQNVRETCEASLLLSLHPRSSLT 100
Query: 134 VIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKM 193
+++QV+HDDG+LL C +NAAC AL+DAG+PM L + C A G I DPT +E++
Sbjct: 101 LVLQVLHDDGSLLSCFLNAACMALMDAGLPMSCLFCGVTCAIAVDGEIITDPTAAQEKEC 160
Query: 194 KGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKL 253
+ A L F + + ++ S T G+ SV + C+ + AS K+
Sbjct: 161 R--ALLTFAI---------------DSKKCRVMMSSTKGSFSVQELQQCIAISQKASEKI 203
Query: 254 SDFLRRSLQSKLPGDL 269
F R S+Q + +L
Sbjct: 204 FQFYRDSVQRRYSKNL 219
>gi|328875787|gb|EGG24151.1| hypothetical protein DFA_06297 [Dictyostelium fasciculatum]
Length = 329
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 79/270 (29%), Positives = 129/270 (47%), Gaps = 49/270 (18%)
Query: 3 VDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYW 62
+ R D R NQ+RP+ ++L++A GSA +SQG
Sbjct: 83 IKRDDTRLSNQIRPIESEQALLNKADGSAKFSQG-------------------------- 116
Query: 63 VGSGDTKVLAAVYGP-KAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSI 121
+ VLAAVYGP T + E K+ ++V + P TG +KE E++++ ++SI
Sbjct: 117 ----KSSVLAAVYGPIDVKTARKEKISKSVVDVSFTPATGNTTYFDKEREMLVRNAVESI 172
Query: 122 CILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYC 181
+ ++P T +VI+QV +DG+++ CAINA C AL+DAGI + L +I
Sbjct: 173 ILTLLHPRTQINVIVQVYSNDGSIISCAINACCLALLDAGIELNCLISSITLSFTHDNQI 232
Query: 182 ILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFH 241
LDPT+ EE KG A NS + I+ + T G + YF
Sbjct: 233 YLDPTQKEENNSKGLAVYAI-NS-----------------KSEIVMTKTTGIIGESLYFQ 274
Query: 242 CLERGRAASAKLSDFLRRSLQSKLPGDLSK 271
L + + K+S + R ++++++ GD ++
Sbjct: 275 GLNIAKQSCEKVSAYTRLAVRNRIMGDQTQ 304
>gi|426388821|ref|XP_004060830.1| PREDICTED: exosome complex component RRP46 [Gorilla gorilla
gorilla]
Length = 235
Score = 120 bits (300), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 99/188 (52%), Gaps = 32/188 (17%)
Query: 14 LRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLAA 73
LR AC ++L R GSAS+ QG DT VLA
Sbjct: 28 LRHFACEQNLLSRPDGSASFLQG------------------------------DTSVLAG 57
Query: 74 VYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTS 133
VYGP E KA++EVI +P+ G G EK E +++ T +++ + T++P T+ +
Sbjct: 58 VYGPAEVKVSKEIFNKATLEVILRPKIGLPGVAEKSRERLIRNTCEAVVLGTLHPRTSIT 117
Query: 134 VIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKM 193
V++QVV D G+LL C +NAAC ALVDAG+PM+ L I C G +LDPT +E++
Sbjct: 118 VVLQVVSDAGSLLACCLNAACMALVDAGVPMRALFCGITCALDSDGTLVLDPTSKQEKEA 177
Query: 194 KGFAYLVF 201
+ A L F
Sbjct: 178 R--AVLTF 183
>gi|14043511|gb|AAH07742.1| Exosome component 5 [Homo sapiens]
gi|78394993|gb|AAI07697.1| Exosome component 5 [Homo sapiens]
gi|119577442|gb|EAW57038.1| exosome component 5 [Homo sapiens]
gi|325463845|gb|ADZ15693.1| exosome component 5 [synthetic construct]
Length = 235
Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 71/194 (36%), Positives = 101/194 (52%), Gaps = 33/194 (17%)
Query: 9 RNPN-QLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGD 67
R P LR AC ++L R GSAS+ QG D
Sbjct: 22 RGPGCSLRHFACEQNLLSRPDGSASFLQG------------------------------D 51
Query: 68 TKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTIN 127
T VLA VYGP E KA++EVI +P+ G G EK E +++ T +++ + T++
Sbjct: 52 TSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLPGVAEKSRERLIRNTCEAVVLGTLH 111
Query: 128 PNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTK 187
P T+ +V++QVV D G+LL C +NAAC ALVDAG+PM+ L + C G +LDPT
Sbjct: 112 PRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVPMRALFCGVACALDSDGTLVLDPTS 171
Query: 188 LEEQKMKGFAYLVF 201
+E++ + A L F
Sbjct: 172 KQEKEAR--AVLTF 183
>gi|122920910|pdb|2NN6|D Chain D, Structure Of The Human Rna Exosome Composed Of Rrp41,
Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40
Length = 237
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/194 (36%), Positives = 101/194 (52%), Gaps = 33/194 (17%)
Query: 9 RNPN-QLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGD 67
R P LR AC ++L R GSAS+ QG D
Sbjct: 24 RGPGCSLRHFACEQNLLSRPDGSASFLQG------------------------------D 53
Query: 68 TKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTIN 127
T VLA VYGP E KA++EVI +P+ G G EK E +++ T +++ + T++
Sbjct: 54 TSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLPGVAEKSRERLIRNTCEAVVLGTLH 113
Query: 128 PNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTK 187
P T+ +V++QVV D G+LL C +NAAC ALVDAG+PM+ L + C G +LDPT
Sbjct: 114 PRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVPMRALFCGVACALDSDGTLVLDPTS 173
Query: 188 LEEQKMKGFAYLVF 201
+E++ + A L F
Sbjct: 174 KQEKEAR--AVLTF 185
>gi|114677471|ref|XP_001152170.1| PREDICTED: exosome complex component RRP46 isoform 2 [Pan
troglodytes]
gi|397482601|ref|XP_003812509.1| PREDICTED: exosome complex component RRP46 [Pan paniscus]
gi|410210198|gb|JAA02318.1| exosome component 5 [Pan troglodytes]
gi|410248686|gb|JAA12310.1| exosome component 5 [Pan troglodytes]
gi|410287660|gb|JAA22430.1| exosome component 5 [Pan troglodytes]
Length = 235
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/194 (36%), Positives = 101/194 (52%), Gaps = 33/194 (17%)
Query: 9 RNPN-QLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGD 67
R P LR AC ++L R GSAS+ QG D
Sbjct: 22 RGPGCSLRHFACEQNLLSRPDGSASFLQG------------------------------D 51
Query: 68 TKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTIN 127
T VLA VYGP E KA++EVI +P+ G G EK E +++ T +++ + T++
Sbjct: 52 TSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLPGVAEKSRERLIRNTCEAVVLGTLH 111
Query: 128 PNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTK 187
P T+ +V++QVV D G+LL C +NAAC ALVDAG+PM+ L + C G +LDPT
Sbjct: 112 PRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVPMRALFCGVTCALDSDGTLVLDPTS 171
Query: 188 LEEQKMKGFAYLVF 201
+E++ + A L F
Sbjct: 172 KQEKEAR--AVLTF 183
>gi|355686801|gb|AER98191.1| exosome component 5 [Mustela putorius furo]
Length = 236
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 123/257 (47%), Gaps = 48/257 (18%)
Query: 9 RNPN-QLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGD 67
R P+ LR AC ++L R GSAS+ QG D
Sbjct: 24 RGPSCSLRHFACEQNLLSRPDGSASFLQG------------------------------D 53
Query: 68 TKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTIN 127
T VLA VYGP E KA++EVI +P+ G G EK E +++ T +++ + T++
Sbjct: 54 TSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLPGVAEKSRERLIRNTCEAVVLGTLH 113
Query: 128 PNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTK 187
P T+ +V++QVV D G+LL C +NAAC ALVDAG+PM+ L + C G +LDPT
Sbjct: 114 PRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVPMRALFCGVTCALNADGTLVLDPTA 173
Query: 188 LEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGR 247
+E++ + L + +E ++ S T G S + CL +
Sbjct: 174 KQEKEARAVLTLAL-----------------DSVERKLLMSTTKGLYSDAELQQCLAAAQ 216
Query: 248 AASAKLSDFLRRSLQSK 264
AAS + F R SLQ +
Sbjct: 217 AASQHVFRFYRESLQRR 233
>gi|47174864|ref|NP_064543.3| exosome complex component RRP46 [Homo sapiens]
gi|14285757|sp|Q9NQT4.1|EXOS5_HUMAN RecName: Full=Exosome complex component RRP46; AltName:
Full=Chronic myelogenous leukemia tumor antigen 28;
AltName: Full=Exosome component 5; AltName:
Full=Ribosomal RNA-processing protein 46; AltName:
Full=p12B
gi|8927592|gb|AAF82135.1|AF281134_1 exosome component Rrp46 [Homo sapiens]
gi|208966242|dbj|BAG73135.1| exosome component 5 [synthetic construct]
Length = 235
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/194 (36%), Positives = 101/194 (52%), Gaps = 33/194 (17%)
Query: 9 RNPN-QLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGD 67
R P LR AC ++L R GSAS+ QG D
Sbjct: 22 RGPGCSLRHFACEQNLLSRPDGSASFLQG------------------------------D 51
Query: 68 TKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTIN 127
T VLA VYGP E KA++EVI +P+ G G EK E +++ T +++ + T++
Sbjct: 52 TSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLPGVAEKSRERLIRNTCEAVVLGTLH 111
Query: 128 PNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTK 187
P T+ +V++QVV D G+LL C +NAAC ALVDAG+PM+ L + C G +LDPT
Sbjct: 112 PRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVPMRALFCGVACALDSDGTLVLDPTS 171
Query: 188 LEEQKMKGFAYLVF 201
+E++ + A L F
Sbjct: 172 KQEKEAR--AVLTF 183
>gi|290992775|ref|XP_002679009.1| predicted protein [Naegleria gruberi]
gi|284092624|gb|EFC46265.1| predicted protein [Naegleria gruberi]
Length = 280
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/287 (27%), Positives = 136/287 (47%), Gaps = 64/287 (22%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R + NQLR + +L +A GS +SQ
Sbjct: 8 RDQRKTSNQLRDMQVELGVLGKADGSVKFSQ----------------------------- 38
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICIL 124
G+T V+ +V GP++ K E ++A I+V+++PR + + EKEYE+I+++TL+++ +
Sbjct: 39 -GNTTVICSVCGPESSMK--EKGDQAIIDVMFQPRDKKASEEEKEYELIIRQTLENVILT 95
Query: 125 TINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILD 184
I P T ++ IQVV DG LL ++NAA AL+DAG+ MK V+ C SG C+LD
Sbjct: 96 NIYPRTVITISIQVVQYDGCLLSASLNAASLALLDAGVAMKTTLVSSSCSYLNSGDCLLD 155
Query: 185 PTKLEEQ------------------------KM---KGFAYLVFPNSILSVLPEGSSLVQ 217
PT++E+ K+ KGFA+ VF ++ L + S
Sbjct: 156 PTRIEQDFSSILHNDDSSSYIQYYKTSSKGPKVIVPKGFAFFVFDSAPLRNPSKTDS--- 212
Query: 218 GEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSK 264
+ ++TS+T G ++ + C+ + + + +R +L+ K
Sbjct: 213 --DDDSFLVTSITEGLLTDEALRECISLAKEGALSVYSLIRLTLERK 257
>gi|350538705|ref|NP_001232110.1| putative exosome component 5 [Taeniopygia guttata]
gi|197127157|gb|ACH43655.1| putative exosome component 5 [Taeniopygia guttata]
Length = 224
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/258 (29%), Positives = 126/258 (48%), Gaps = 49/258 (18%)
Query: 7 DGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSG 66
DGR +LR +C +L R GSA++ QG
Sbjct: 12 DGRC--RLRRFSCELGLLSRPDGSAAFLQG------------------------------ 39
Query: 67 DTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTI 126
DT VLA +YGP E P++A+++V+ +P+ G G E+ E +L++T +++ + +
Sbjct: 40 DTSVLAGLYGPAEAKISKELPDRAALDVLLRPKVGLPGVLERSREQLLQQTCEAVVLGVL 99
Query: 127 NPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPT 186
+P T S+++QV+ D G+LL C +NAAC AL+DAG+P+ L + C G +LDPT
Sbjct: 100 HPRTAISLVLQVLSDAGSLLSCCLNAACMALLDAGLPLSALFCGVTCALQPDGAILLDPT 159
Query: 187 KLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERG 246
+EQ+ + A L F +I S + ++ T G+ SV + CL
Sbjct: 160 ARQEQEAR--AVLTF--AIASA-------------DRKVLMVTTKGSCSVQEMQQCLAAA 202
Query: 247 RAASAKLSDFLRRSLQSK 264
+ A+ + F R S++ +
Sbjct: 203 QRAADTIFQFYRDSVRRR 220
>gi|73947485|ref|XP_852838.1| PREDICTED: exosome complex component RRP46 [Canis lupus familiaris]
Length = 235
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 86/257 (33%), Positives = 124/257 (48%), Gaps = 48/257 (18%)
Query: 9 RNPN-QLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGD 67
R P LR AC ++L R GSAS+ QG D
Sbjct: 22 RGPGCSLRHFACEQNLLSRPDGSASFLQG------------------------------D 51
Query: 68 TKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTIN 127
T VLA VYGP E KA++EVI +P+ G G EK E +++ T +++ + T++
Sbjct: 52 TSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLPGVAEKSRERLIRNTCEAVVLGTLH 111
Query: 128 PNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTK 187
P T+ +V++QVV D G+LL C +NAAC ALVDAG+PM+ L + C G +LDPT
Sbjct: 112 PRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVPMRALFCGVTCALNSDGTLVLDPTA 171
Query: 188 LEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGR 247
+E++ + A L F + +E ++ S T G S + CL +
Sbjct: 172 KQEKEAR--AVLTFAL---------------DSVERKLLMSTTKGLYSAAELQQCLAAAQ 214
Query: 248 AASAKLSDFLRRSLQSK 264
AAS + F R SLQ +
Sbjct: 215 AASQHVFRFYRESLQRR 231
>gi|402905661|ref|XP_003915633.1| PREDICTED: exosome complex component RRP46 [Papio anubis]
Length = 260
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/194 (36%), Positives = 101/194 (52%), Gaps = 33/194 (17%)
Query: 9 RNPN-QLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGD 67
R P LR AC ++L R GSAS+ QG D
Sbjct: 47 RGPGCSLRHFACEQNLLSRPDGSASFLQG------------------------------D 76
Query: 68 TKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTIN 127
T VLA VYGP E KA++EVI +P+ G G EK E +++ T +++ + T++
Sbjct: 77 TSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLPGVAEKSRERLIRNTCEAVVLGTLH 136
Query: 128 PNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTK 187
P T+ +V++QVV D G+LL C +NAAC ALVDAG+PM+ L + C G +LDPT
Sbjct: 137 PRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVPMRALFCGVTCALDSDGTLVLDPTS 196
Query: 188 LEEQKMKGFAYLVF 201
+E++ + A L F
Sbjct: 197 KQEKEAR--AVLTF 208
>gi|380814818|gb|AFE79283.1| exosome complex component RRP46 [Macaca mulatta]
gi|383414573|gb|AFH30500.1| exosome complex component RRP46 [Macaca mulatta]
Length = 235
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/194 (36%), Positives = 101/194 (52%), Gaps = 33/194 (17%)
Query: 9 RNPN-QLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGD 67
R P LR AC ++L R GSAS+ QG D
Sbjct: 22 RGPGCSLRHFACEQNLLSRPDGSASFLQG------------------------------D 51
Query: 68 TKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTIN 127
T VLA VYGP E KA++EVI +P+ G G EK E +++ T +++ + T++
Sbjct: 52 TSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLPGVAEKSRERLIRNTCEAVVLGTLH 111
Query: 128 PNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTK 187
P T+ +V++QVV D G+LL C +NAAC ALVDAG+PM+ L + C G +LDPT
Sbjct: 112 PRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVPMRALFCGVTCALDSDGTLVLDPTS 171
Query: 188 LEEQKMKGFAYLVF 201
+E++ + A L F
Sbjct: 172 KQEKEAR--AVLTF 183
>gi|297277133|ref|XP_001102687.2| PREDICTED: exosome complex exonuclease RRP46 [Macaca mulatta]
Length = 277
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/194 (36%), Positives = 101/194 (52%), Gaps = 33/194 (17%)
Query: 9 RNPN-QLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGD 67
R P LR AC ++L R GSAS+ QG D
Sbjct: 64 RGPGCSLRHFACEQNLLSRPDGSASFLQG------------------------------D 93
Query: 68 TKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTIN 127
T VLA VYGP E KA++EVI +P+ G G EK E +++ T +++ + T++
Sbjct: 94 TSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLPGVAEKSRERLIRNTCEAVVLGTLH 153
Query: 128 PNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTK 187
P T+ +V++QVV D G+LL C +NAAC ALVDAG+PM+ L + C G +LDPT
Sbjct: 154 PRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVPMRALFCGVTCALDSDGTLVLDPTS 213
Query: 188 LEEQKMKGFAYLVF 201
+E++ + A L F
Sbjct: 214 KQEKEAR--AVLTF 225
>gi|21693160|gb|AAM75154.1| chronic myelogenous leukemia tumor antigen 28 [Homo sapiens]
Length = 268
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/194 (36%), Positives = 101/194 (52%), Gaps = 33/194 (17%)
Query: 9 RNPN-QLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGD 67
R P LR AC ++L R GSAS+ QG D
Sbjct: 55 RGPGCSLRHFACEQNLLSRPDGSASFLQG------------------------------D 84
Query: 68 TKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTIN 127
T VLA VYGP E KA++EVI +P+ G G EK E +++ T +++ + T++
Sbjct: 85 TSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLPGVAEKSRERLIRNTCEAVVLGTLH 144
Query: 128 PNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTK 187
P T+ +V++QVV D G+LL C +NAAC ALVDAG+PM+ L + C G +LDPT
Sbjct: 145 PRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVPMRALFCGVACALDSDGTLVLDPTS 204
Query: 188 LEEQKMKGFAYLVF 201
+E++ + A L F
Sbjct: 205 KQEKEAR--AVLTF 216
>gi|363746058|ref|XP_003643513.1| PREDICTED: exosome complex component RRP46-like, partial [Gallus
gallus]
Length = 173
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 99/188 (52%), Gaps = 32/188 (17%)
Query: 14 LRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLAA 73
LRP +C +L R GSA++ QG DT VLA
Sbjct: 12 LRPFSCEQGLLSRPDGSATFVQG------------------------------DTSVLAG 41
Query: 74 VYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTS 133
+YGP E+P+ A++EV+ +P+ G G E+ E +L+RT +++ + +++P T+ +
Sbjct: 42 LYGPAEVKGSRESPDGATVEVLLRPKVGLPGVAERSREQLLRRTFEAVLLGSLHPRTSIT 101
Query: 134 VIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKM 193
V++QV+ D G+LL C +NAAC L+DAG+P+ L + C G ILDPT +EQ
Sbjct: 102 VVLQVLSDAGSLLACCLNAACMGLLDAGLPLSSLFCGVTCALDPHGDIILDPTARQEQ-- 159
Query: 194 KGFAYLVF 201
+ A L F
Sbjct: 160 EAHAVLTF 167
>gi|149722162|ref|XP_001500390.1| PREDICTED: exosome complex component RRP46-like [Equus caballus]
Length = 235
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 101/194 (52%), Gaps = 33/194 (17%)
Query: 9 RNPN-QLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGD 67
R P LR AC ++L R GSAS+ QG D
Sbjct: 22 RGPGCSLRHFACEQNLLSRPDGSASFLQG------------------------------D 51
Query: 68 TKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTIN 127
T VLA VYGP E KA++EVI +P+ G G EK E +++ T +++ + T++
Sbjct: 52 TSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLPGVAEKSRERLIRNTCEAVVLGTLH 111
Query: 128 PNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTK 187
P T+ +V++QV+ D G+LL C +NAAC ALVDAG+PM+ L + C G +LDPT
Sbjct: 112 PRTSITVVLQVISDAGSLLACCLNAACMALVDAGVPMRALFCGVTCALDSDGTLMLDPTA 171
Query: 188 LEEQKMKGFAYLVF 201
+E++ + A L F
Sbjct: 172 KQEKEAR--AVLTF 183
>gi|301776621|ref|XP_002923728.1| PREDICTED: exosome complex exonuclease RRP46-like [Ailuropoda
melanoleuca]
Length = 239
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 68/188 (36%), Positives = 99/188 (52%), Gaps = 32/188 (17%)
Query: 14 LRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLAA 73
LR AC ++L R GSAS+ QG DT VLA
Sbjct: 32 LRHFACEQNLLSRPDGSASFLQG------------------------------DTSVLAG 61
Query: 74 VYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTS 133
VYGP E KA++EVI +P+ G G EK E +++ T +++ + T++P T+ +
Sbjct: 62 VYGPAEVKVSKEIFNKATLEVILRPKIGLPGVAEKSRERLIRNTCEAVVLGTLHPRTSIT 121
Query: 134 VIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKM 193
V++QV+ D G+LL C +NAAC ALVDAG+PM+ L + C G +LDPT +E++
Sbjct: 122 VVLQVISDAGSLLACCLNAACMALVDAGVPMRALFCGVTCALNSDGTLVLDPTAKQEKEA 181
Query: 194 KGFAYLVF 201
+ A L F
Sbjct: 182 R--AVLTF 187
>gi|189067465|dbj|BAG37447.1| unnamed protein product [Homo sapiens]
Length = 235
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 71/194 (36%), Positives = 101/194 (52%), Gaps = 33/194 (17%)
Query: 9 RNPNQ-LRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGD 67
R P + LR AC ++L R GSAS+ QG D
Sbjct: 22 RGPGRSLRHFACEQNLLSRPDGSASFLQG------------------------------D 51
Query: 68 TKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTIN 127
T VLA VYGP E KA++EVI +P+ G G EK E +++ T +++ + T++
Sbjct: 52 TSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLPGVAEKSRERLIRNTCEAVVLGTLH 111
Query: 128 PNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTK 187
P T+ +V+ QVV D G+LL C +NAAC ALVDAG+PM+ L + C G +LDPT
Sbjct: 112 PRTSITVVPQVVSDAGSLLACCLNAACMALVDAGVPMRALFCGVACALDSDGTLVLDPTS 171
Query: 188 LEEQKMKGFAYLVF 201
+E++ + A L F
Sbjct: 172 KQEKEAR--AVLTF 183
>gi|395859609|ref|XP_003802126.1| PREDICTED: exosome complex component RRP46 [Otolemur garnettii]
Length = 235
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 100/194 (51%), Gaps = 33/194 (17%)
Query: 9 RNPN-QLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGD 67
R P LR AC ++L R GSAS+ QG D
Sbjct: 22 RGPGCSLRHFACEQNLLSRPDGSASFMQG------------------------------D 51
Query: 68 TKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTIN 127
T VLA VYGP E KA++EVI +P+ G G EK E +++ T +++ + ++
Sbjct: 52 TSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLPGVAEKSRERLIRNTCEAVVLGALH 111
Query: 128 PNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTK 187
P T+ +V++QVV D G+LL C +NAAC ALVDAG+PM+ L + C G +LDPT
Sbjct: 112 PRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVPMRALFCGVTCALDSDGTLVLDPTA 171
Query: 188 LEEQKMKGFAYLVF 201
+E++ + A L F
Sbjct: 172 KQEKEAR--AVLTF 183
>gi|413945995|gb|AFW78644.1| hypothetical protein ZEAMMB73_813724 [Zea mays]
Length = 548
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 66/161 (40%), Positives = 82/161 (50%), Gaps = 58/161 (36%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
RADG+NPNQLR C ++LHRAHG W+QG
Sbjct: 6 RADGQNPNQLRLFTCIGNLLHRAHGCTRWAQG---------------------------- 37
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQI--------------------- 103
+L+AVYGPK GT + PEKASIE +WKPRTGQI
Sbjct: 38 --GIVMLSAVYGPKPGTVRGRTPEKASIEAVWKPRTGQIDTPLFPSSSFCPTAVRVIGSL 95
Query: 104 -------GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQ 137
G+ E+EYE+ LKR LQSIC+LT++ NTTTSV++Q
Sbjct: 96 KWRVVFAGRQEREYEMTLKRMLQSICLLTVHANTTTSVVLQ 136
>gi|281340717|gb|EFB16301.1| hypothetical protein PANDA_012923 [Ailuropoda melanoleuca]
Length = 206
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 101/194 (52%), Gaps = 33/194 (17%)
Query: 9 RNPN-QLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGD 67
R P LR AC ++L R GSAS+ QG D
Sbjct: 22 RGPACSLRHFACEQNLLSRPDGSASFLQG------------------------------D 51
Query: 68 TKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTIN 127
T VLA VYGP E KA++EVI +P+ G G EK E +++ T +++ + T++
Sbjct: 52 TSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLPGVAEKSRERLIRNTCEAVVLGTLH 111
Query: 128 PNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTK 187
P T+ +V++QV+ D G+LL C +NAAC ALVDAG+PM+ L + C G +LDPT
Sbjct: 112 PRTSITVVLQVISDAGSLLACCLNAACMALVDAGVPMRALFCGVTCALNSDGTLVLDPTA 171
Query: 188 LEEQKMKGFAYLVF 201
+E++ + A L F
Sbjct: 172 KQEKEAR--AVLTF 183
>gi|410982976|ref|XP_003997820.1| PREDICTED: exosome complex component RRP46 [Felis catus]
Length = 235
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 100/194 (51%), Gaps = 33/194 (17%)
Query: 9 RNPN-QLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGD 67
R P LR AC ++L R GSAS+ QG D
Sbjct: 22 RGPGCSLRHFACEQNLLSRPDGSASFLQG------------------------------D 51
Query: 68 TKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTIN 127
T VLA VYGP E KA++EVI +P+ G G EK E +++ T +++ + ++
Sbjct: 52 TSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLPGVAEKSRERLIRNTCEAVVLGALH 111
Query: 128 PNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTK 187
P T+ +V++QVV D G+LL C +NAAC ALVDAG+PM+ L + C G +LDPT
Sbjct: 112 PRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVPMRALFCGVTCALDSEGTLVLDPTA 171
Query: 188 LEEQKMKGFAYLVF 201
+E++ + A L F
Sbjct: 172 KQEKEAR--AILTF 183
>gi|449510334|ref|XP_002198831.2| PREDICTED: exosome complex component RRP46-like, partial
[Taeniopygia guttata]
Length = 208
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 109/199 (54%), Gaps = 17/199 (8%)
Query: 66 GDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILT 125
GDT VLA +YGP E P++A+++V+ +P+ G G E+ E +L++T +++ +
Sbjct: 23 GDTSVLAGLYGPAEAKISKELPDRAALDVLLRPKVGLPGVLERSREQLLQQTCEAVVLGV 82
Query: 126 INPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDP 185
++P T S+++QV+ D G+LL C +NAAC AL+DAG+P+ L + C G +LDP
Sbjct: 83 LHPRTAISLVLQVLSDAGSLLSCCLNAACMALLDAGLPLSALFCGVTCALQPDGAILLDP 142
Query: 186 TKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLER 245
T +EQ+ + A L F +I S E ++ T G+ SV + CL
Sbjct: 143 TARQEQEAR--AVLTF--AIASA-------------ERKVLMVTTKGSCSVQEMQQCLAA 185
Query: 246 GRAASAKLSDFLRRSLQSK 264
+ A+ + F R S++ +
Sbjct: 186 SQRAADTIFQFYRDSVRRR 204
>gi|68533900|gb|AAH99290.1| LOC733302 protein [Xenopus laevis]
Length = 224
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 114/250 (45%), Gaps = 51/250 (20%)
Query: 14 LRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLAA 73
LR C S+L R GSA++ QG DT VLA
Sbjct: 17 LREYGCEQSLLSRPDGSATFLQG------------------------------DTSVLAG 46
Query: 74 VYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTS 133
VYGP E KA++EVI +P+TG EK +E +++ T +S+ I +++P T+ +
Sbjct: 47 VYGPAEIKVSREIHNKATLEVILRPKTGLPAIQEKNHEQLIRETCESVIIGSLHPRTSIT 106
Query: 134 VIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKM 193
+++Q++ D G+LL C +NAAC L+DAG+PM+ L + C G LDP ++++
Sbjct: 107 IVLQIISDAGSLLSCCLNAACMGLMDAGLPMRSLFCGVTCALDNDGNITLDPNDRQQKES 166
Query: 194 KGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKL 253
+ E E ++ + + G S + C+ + AS KL
Sbjct: 167 RAVVTFAI-----------------ESTERKVLMTSSRGLYSAAELQQCIAAAQLASEKL 209
Query: 254 ----SDFLRR 259
DF+RR
Sbjct: 210 FQFYRDFIRR 219
>gi|297847232|ref|XP_002891497.1| hypothetical protein ARALYDRAFT_891796 [Arabidopsis lyrata subsp.
lyrata]
gi|297337339|gb|EFH67756.1| hypothetical protein ARALYDRAFT_891796 [Arabidopsis lyrata subsp.
lyrata]
Length = 159
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 60/113 (53%), Positives = 69/113 (61%), Gaps = 30/113 (26%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFC 60
+E+DR DGR P+QLRPLACS +ILHR HGSASWSQG
Sbjct: 24 IEIDREDGRTPDQLRPLACSRNILHRPHGSASWSQG------------------------ 59
Query: 61 YWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEII 113
DTKVLAAVYGPK GT+KNENPEKA EVIWKP++GQI P ++
Sbjct: 60 ------DTKVLAAVYGPKPGTRKNENPEKACFEVIWKPKSGQIVFPNTTLSVL 106
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/64 (70%), Positives = 53/64 (82%)
Query: 199 LVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLR 258
+VFPN+ LSVLPEGSSLV+GEP+E GII VTHG MSVDDYF C+E GRAA+A LS F R
Sbjct: 96 IVFPNTTLSVLPEGSSLVEGEPVEDGIIKLVTHGVMSVDDYFWCVENGRAATASLSAFFR 155
Query: 259 RSLQ 262
++ Q
Sbjct: 156 KNFQ 159
>gi|296233893|ref|XP_002762219.1| PREDICTED: exosome complex component RRP46 [Callithrix jacchus]
Length = 179
Score = 116 bits (291), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 57/129 (44%), Positives = 82/129 (63%)
Query: 63 VGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSIC 122
+GSGDT VLA VYGP E KA++EVI +P+ G G EK E +++ T +++
Sbjct: 21 LGSGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLPGVAEKSRERLIRNTCEAVV 80
Query: 123 ILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCI 182
+ T++P T+ +V++QVV D G+LL C +NAAC ALVDAG+PM+ L + C G +
Sbjct: 81 LGTLHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVPMRALFCGVTCALDSDGTLV 140
Query: 183 LDPTKLEEQ 191
LDPT E+
Sbjct: 141 LDPTSKREK 149
>gi|431911571|gb|ELK13728.1| Exosome complex exonuclease RRP46 [Pteropus alecto]
Length = 231
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 99/188 (52%), Gaps = 32/188 (17%)
Query: 14 LRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLAA 73
LR AC ++L R GSAS+ QG DT +LA
Sbjct: 24 LRHFACEQNLLSRPDGSASFLQG------------------------------DTSILAG 53
Query: 74 VYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTS 133
VYGP E KA++EVI +P+ G G EK E +++ T +++ + ++P T+ +
Sbjct: 54 VYGPAEVKVSKEIFNKATLEVILRPKIGLPGVAEKSRERLIRNTCEAVVLGALHPRTSIT 113
Query: 134 VIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKM 193
V++QV+ D G+LL C +NAAC ALVDAG+PM+ L + C G +LDPT +E+++
Sbjct: 114 VVLQVISDAGSLLACCLNAACMALVDAGVPMRALFCGVTCALDSDGTLVLDPTAKQEKEV 173
Query: 194 KGFAYLVF 201
+ A L F
Sbjct: 174 R--AVLTF 179
>gi|74199186|dbj|BAE33136.1| unnamed protein product [Mus musculus]
Length = 235
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/188 (36%), Positives = 98/188 (52%), Gaps = 32/188 (17%)
Query: 14 LRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLAA 73
LR AC ++L R GSAS+ QG DT VLA
Sbjct: 28 LRHFACEQNLLSRPDGSASFLQG------------------------------DTSVLAG 57
Query: 74 VYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTS 133
VYGP E KA++EVI +P+ G G EK E +++ T +++ + ++P T+ +
Sbjct: 58 VYGPAEVKVSKEIFNKATLEVILRPKIGLPGVAEKSRERLVRNTCEAVVLGALHPRTSIT 117
Query: 134 VIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKM 193
V++QVV D G+LL C +NAAC ALVDAG+PM+ L + C G +LDPT +E++
Sbjct: 118 VVLQVVSDAGSLLACCLNAACMALVDAGVPMRALFCGVTCALDSDGNLVLDPTTKQEKEA 177
Query: 194 KGFAYLVF 201
+ A L F
Sbjct: 178 R--AILTF 183
>gi|20070392|ref|NP_613052.1| exosome complex component RRP46 [Mus musculus]
gi|21759413|sp|Q9CRA8.1|EXOS5_MOUSE RecName: Full=Exosome complex component RRP46; AltName:
Full=Exosome component 5; AltName: Full=Ribosomal
RNA-processing protein 46
gi|12839596|dbj|BAB24607.1| unnamed protein product [Mus musculus]
gi|12840879|dbj|BAB24993.1| unnamed protein product [Mus musculus]
gi|148692300|gb|EDL24247.1| exosome component 5, isoform CRA_b [Mus musculus]
Length = 235
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/188 (36%), Positives = 98/188 (52%), Gaps = 32/188 (17%)
Query: 14 LRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLAA 73
LR AC ++L R GSAS+ QG DT VLA
Sbjct: 28 LRHFACEQNLLSRPDGSASFLQG------------------------------DTSVLAG 57
Query: 74 VYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTS 133
VYGP E KA++EVI +P+ G G EK E +++ T +++ + ++P T+ +
Sbjct: 58 VYGPAEVKVSKEIFNKATLEVILRPKIGLPGVAEKSRERLVRNTCEAVVLGALHPRTSIT 117
Query: 134 VIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKM 193
V++QVV D G+LL C +NAAC ALVDAG+PM+ L + C G +LDPT +E++
Sbjct: 118 VVLQVVSDAGSLLACCLNAACMALVDAGVPMRALFCGVTCALDSDGNLVLDPTTKQEKEA 177
Query: 194 KGFAYLVF 201
+ A L F
Sbjct: 178 R--AILTF 183
>gi|332242411|ref|XP_003270380.1| PREDICTED: exosome complex component RRP46 isoform 1 [Nomascus
leucogenys]
gi|441654056|ref|XP_004091049.1| PREDICTED: exosome complex component RRP46 isoform 2 [Nomascus
leucogenys]
Length = 235
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 100/194 (51%), Gaps = 33/194 (17%)
Query: 9 RNPN-QLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGD 67
R P LR AC ++L R GSAS+ QG D
Sbjct: 22 RGPGCSLRHFACEQNLLSRPDGSASFLQG------------------------------D 51
Query: 68 TKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTIN 127
T VLA VYGP E KA++EVI +P+ G EK E +++ T +++ + T++
Sbjct: 52 TSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIRLPGVAEKSRERLIRNTCEAVVLGTLH 111
Query: 128 PNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTK 187
P T+ +V++QVV D G+LL C +NAAC ALVDAG+PM+ L + C G +LDPT
Sbjct: 112 PRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVPMRALFCGVTCALDSDGTLVLDPTS 171
Query: 188 LEEQKMKGFAYLVF 201
+E++ + A L F
Sbjct: 172 KQEKEAR--AVLTF 183
>gi|21706518|gb|AAH34358.1| Exosome component 5 [Mus musculus]
Length = 235
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/188 (36%), Positives = 98/188 (52%), Gaps = 32/188 (17%)
Query: 14 LRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLAA 73
LR AC ++L R GSAS+ QG DT VLA
Sbjct: 28 LRHFACEQNLLSRPDGSASFLQG------------------------------DTSVLAG 57
Query: 74 VYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTS 133
VYGP E KA++EVI +P+ G G EK E +++ T +++ + ++P T+ +
Sbjct: 58 VYGPAEVKVSKEIFNKATLEVILRPKIGLPGVAEKSRERLVRNTCEAVVLGALHPRTSIT 117
Query: 134 VIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKM 193
V++QVV D G+LL C +NAAC ALVDAG+PM+ L + C G +LDPT +E++
Sbjct: 118 VVLQVVSDAGSLLACCLNAACMALVDAGVPMRALFCGVTCALDSDGNLVLDPTTKQEKEA 177
Query: 194 KGFAYLVF 201
+ A L F
Sbjct: 178 R--AILTF 183
>gi|328771377|gb|EGF81417.1| hypothetical protein BATDEDRAFT_23824 [Batrachochytrium
dendrobatidis JAM81]
Length = 217
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 104/203 (51%), Gaps = 31/203 (15%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R D R+ QLR + C +L RA GSA ++ G
Sbjct: 18 RPDKRSVTQLRTMGCVVGMLSRADGSARFTLG---------------------------- 49
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICIL 124
+ VL +VYGP A ++E + A I+V++ P +G G E+ YE +++ +++I +
Sbjct: 50 --KSSVLCSVYGPTASRPRDEKLDHAHIQVVFSPVSGISGTQERTYEHFIRQVVEAIVLS 107
Query: 125 TINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILD 184
++P TT + +QV+ DDG++L AINAA AL+DAGIP+ A+ C ++ G +LD
Sbjct: 108 ALHPRTTIQITLQVLFDDGSILSTAINAAVLALIDAGIPLSKTCSAVTCMISKEGVLLLD 167
Query: 185 PTKLEEQKMKGFAYLVFPNSILS 207
P LE + + LV P++ S
Sbjct: 168 PVLLECSEAQSMHILV-PDATFS 189
>gi|187469539|gb|AAI67023.1| Exosc5 protein [Rattus norvegicus]
Length = 233
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/188 (36%), Positives = 98/188 (52%), Gaps = 32/188 (17%)
Query: 14 LRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLAA 73
LR AC ++L R GSAS+ QG DT VLA
Sbjct: 26 LRHFACEQNLLSRPDGSASFLQG------------------------------DTSVLAG 55
Query: 74 VYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTS 133
VYGP E KA++EVI +P+ G G EK E +++ T +++ + ++P T+ +
Sbjct: 56 VYGPAEVKVSKEIFNKATLEVILRPKIGLPGVAEKSRERLIRNTCEAVVLGALHPRTSIT 115
Query: 134 VIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKM 193
V++QVV D G+LL C +NAAC ALVDAG+PM+ L + C G +LDPT +E++
Sbjct: 116 VVLQVVSDTGSLLACCLNAACMALVDAGVPMRALFCGVTCALDPDGNLVLDPTTKQEKEA 175
Query: 194 KGFAYLVF 201
+ A L F
Sbjct: 176 R--AILTF 181
>gi|312596907|ref|NP_001100963.2| exosome complex exonuclease RRP46 [Rattus norvegicus]
Length = 235
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/188 (36%), Positives = 98/188 (52%), Gaps = 32/188 (17%)
Query: 14 LRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLAA 73
LR AC ++L R GSAS+ QG DT VLA
Sbjct: 28 LRHFACEQNLLSRPDGSASFLQG------------------------------DTSVLAG 57
Query: 74 VYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTS 133
VYGP E KA++EVI +P+ G G EK E +++ T +++ + ++P T+ +
Sbjct: 58 VYGPAEVKVSKEIFNKATLEVILRPKIGLPGVAEKSRERLIRNTCEAVVLGALHPRTSIT 117
Query: 134 VIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKM 193
V++QVV D G+LL C +NAAC ALVDAG+PM+ L + C G +LDPT +E++
Sbjct: 118 VVLQVVSDTGSLLACCLNAACMALVDAGVPMRALFCGVTCALDPDGNLVLDPTTKQEKEA 177
Query: 194 KGFAYLVF 201
+ A L F
Sbjct: 178 R--AILTF 183
>gi|344298319|ref|XP_003420841.1| PREDICTED: exosome complex component RRP46-like [Loxodonta
africana]
Length = 235
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/188 (35%), Positives = 99/188 (52%), Gaps = 32/188 (17%)
Query: 14 LRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLAA 73
LR AC ++L R GSAS+ QG DT VLA
Sbjct: 28 LRHFACEQNLLSRPDGSASFLQG------------------------------DTSVLAG 57
Query: 74 VYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTS 133
VYGP E KA++EV+ +P+TG G EK E +++ T +++ + ++P T+ +
Sbjct: 58 VYGPAEVKISKEIFNKATLEVLLRPKTGLPGVAEKSRERLIRNTCEAVVLGALHPRTSIT 117
Query: 134 VIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKM 193
V++QV+ D G+LL C +NAAC ALVDAG+PM+ L + C G +LDPT +E++
Sbjct: 118 VVLQVISDAGSLLACCLNAACMALVDAGVPMRALFCGVTCALDADGNLVLDPTVKQEKEA 177
Query: 194 KGFAYLVF 201
+ A L F
Sbjct: 178 R--AVLTF 183
>gi|390370164|ref|XP_793149.3| PREDICTED: exosome complex component RRP46-like [Strongylocentrotus
purpuratus]
Length = 191
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 108/204 (52%), Gaps = 17/204 (8%)
Query: 62 WVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSI 121
+V GDT V+AAVYGP +KA++ V +KP+ G G EK E +++ T +++
Sbjct: 2 FVHVGDTSVMAAVYGPGDVKPNKALMDKATVTVTYKPKIGISGVREKALERMIRNTCETV 61
Query: 122 CILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYC 181
+ T+ P ++ +I+Q + D GALL C+INAAC A+++AGIPMK A CC +
Sbjct: 62 LLTTLFPRSSVDIIVQEIQDAGALLACSINAACLAMINAGIPMKCTVAASCCMMGKDEEL 121
Query: 182 ILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFH 241
I+DPTK + + A V ++I + H +I S G+ SV+ Y
Sbjct: 122 IMDPTKEQTKD----AECVLTSAI-------------DSSAHSLIASSMQGSCSVEQYHK 164
Query: 242 CLERGRAASAKLSDFLRRSLQSKL 265
+ + A K+ +F R +++ L
Sbjct: 165 LMSVCQKACDKVFEFYREAMERTL 188
>gi|417397593|gb|JAA45830.1| Putative exosome complex component rrp46-like protein [Desmodus
rotundus]
Length = 235
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 123/257 (47%), Gaps = 48/257 (18%)
Query: 9 RNPN-QLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGD 67
R P LR AC ++L R GSAS+ QG D
Sbjct: 22 RGPGCSLRHFACEQNLLSRPDGSASFLQG------------------------------D 51
Query: 68 TKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTIN 127
T +LA VYGP E KA++EVI +P+ G G EK E +++ T +++ + ++
Sbjct: 52 TSILAGVYGPAEVKVSKEIFNKATLEVILRPKIGLPGVAEKSRERLIRNTCEAVVLGVLH 111
Query: 128 PNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTK 187
P T+ +V++QV+ D G+LL C +NAAC ALVDAG+PM+ L + C G +LDPT
Sbjct: 112 PRTSITVVLQVISDAGSLLACCLNAACMALVDAGVPMQALFCGVTCALDADGTLMLDPTA 171
Query: 188 LEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGR 247
+E++ + A L F + +E ++ S T G S + CL +
Sbjct: 172 KQEKEAR--AVLTFAL---------------DSVEQKLLMSTTKGLFSDAELQQCLAAAQ 214
Query: 248 AASAKLSDFLRRSLQSK 264
AAS + F R SLQ +
Sbjct: 215 AASQHVFRFYRESLQRR 231
>gi|189441917|gb|AAI67726.1| LOC100170617 protein [Xenopus (Silurana) tropicalis]
Length = 226
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/250 (30%), Positives = 114/250 (45%), Gaps = 51/250 (20%)
Query: 14 LRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLAA 73
LR C S+L R GSA++ QG DT V+A
Sbjct: 19 LREYGCEQSLLSRPDGSATFLQG------------------------------DTSVMAG 48
Query: 74 VYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTS 133
VYGP E KA++EVI +P+TG EK E +++ T +S+ I +++P T+ +
Sbjct: 49 VYGPAEIKVSREIHNKATLEVILRPKTGLPAIQEKNQEQLIRETCESVIIGSLHPRTSIT 108
Query: 134 VIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKM 193
+++Q+V D G+LL C +NAAC L+DAG+PM+ L + C G LDP ++++
Sbjct: 109 IVLQIVSDAGSLLSCCLNAACMGLMDAGLPMRALFCGVTCAMDNDGTITLDPNFRQQKES 168
Query: 194 KGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKL 253
+ A L F E E ++ G S + C+ + AS KL
Sbjct: 169 R--AVLTFAI---------------ESTERKVLMMSNRGVYSATELQQCIAAAQIASEKL 211
Query: 254 ----SDFLRR 259
DF+RR
Sbjct: 212 FQFYRDFIRR 221
>gi|403305478|ref|XP_003943292.1| PREDICTED: LOW QUALITY PROTEIN: exosome complex component RRP46,
partial [Saimiri boliviensis boliviensis]
Length = 238
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 95/184 (51%), Gaps = 31/184 (16%)
Query: 9 RNPN-QLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGD 67
R P LR AC ++L R GSAS+ QG D
Sbjct: 55 RGPGCSLRHFACEQNLLSRPDGSASFLQG------------------------------D 84
Query: 68 TKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTIN 127
T VLA VYGP E KA++EVI +P+ G G EK E +++ T ++ + T++
Sbjct: 85 TSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLPGVAEKSRERLIRNTCEAAVLGTLH 144
Query: 128 PNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTK 187
P T+ +V++QVV D G+LL C +NAAC ALVDAG+PM+ L + C G +LDPT
Sbjct: 145 PRTSITVVLQVVSDAGSLLACCLNAACIALVDAGVPMRALFCGVTCALDSDGSLVLDPTS 204
Query: 188 LEEQ 191
+E+
Sbjct: 205 KQEK 208
>gi|302841757|ref|XP_002952423.1| hypothetical protein VOLCADRAFT_105481 [Volvox carteri f.
nagariensis]
gi|300262359|gb|EFJ46566.1| hypothetical protein VOLCADRAFT_105481 [Volvox carteri f.
nagariensis]
Length = 247
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 85/264 (32%), Positives = 131/264 (49%), Gaps = 40/264 (15%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
RA GR P QLR L C S+L RA GSA W+Q
Sbjct: 15 RARGRLPTQLRTLVCERSVLDRADGSAKWTQE---------------------------- 46
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICIL 124
+ VLAAVYGP+ + E+ E+A +EV++KPR G G ++ +E+ ++ L+ + L
Sbjct: 47 --GSSVLAAVYGPRQAKPQKEDAEQAVVEVVYKPRAGLQGHEDRTFELEVRGILEGVIPL 104
Query: 125 TINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILD 184
+ P T+ V++QV+ DGA+L CA+NAACAALVDAGI M + ++ C E +LD
Sbjct: 105 GMYPRTSIMVVLQVLQGDGAVLSCALNAACAALVDAGIAMTSMYASVTCVLTEEERLLLD 164
Query: 185 PTKLEEQKMKG-FAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCL 243
EEQ K F + V + L+ +G ++ + + S ++G+ + D
Sbjct: 165 SDAAEEQAAKACFCFTVPHHYDLTKAIDGQVVIS-----NAALGSRSYGSFTSDHMLDAF 219
Query: 244 ERGRAASAKLSDF----LRRSLQS 263
R +++ F L +SLQ+
Sbjct: 220 MLARLGCERVAIFAWLSLTKSLQA 243
>gi|126697382|gb|ABO26648.1| exosome component 5 [Haliotis discus discus]
Length = 211
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 125/255 (49%), Gaps = 49/255 (19%)
Query: 12 NQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVL 71
LRP+ +L R G+ +++QG DT +L
Sbjct: 2 TDLRPMTSDLGVLTRPDGTVTFTQG------------------------------DTGIL 31
Query: 72 AAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTT 131
AAVYGP E ++A++EVI+KP++G G E+ +E ++ T++++ + +++P +
Sbjct: 32 AAVYGPGEVKIAREILDRATVEVIYKPKSGLPGCSERLHERYIRNTVETVILASLHPRSC 91
Query: 132 TSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPT-KLEE 190
SV +Q + D G+LL C++NAAC AL+DA + MK+L + G +L P K E
Sbjct: 92 ISVTVQELQDSGSLLACSVNAACLALLDACVNMKYLIAGVYVIIDREGNTVLVPDLKQEG 151
Query: 191 QKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAAS 250
+K+ G +++ E + ++T + G+++ + + CL +AA+
Sbjct: 152 EKVAGVTFVL------------------ENQTYSVVTMSSRGSLTTEQFHRCLLHAQAAA 193
Query: 251 AKLSDFLRRSLQSKL 265
++ F R +++ K+
Sbjct: 194 KQIFSFYRIAVEKKM 208
>gi|327276285|ref|XP_003222900.1| PREDICTED: exosome complex exonuclease RRP46-like isoform 1 [Anolis
carolinensis]
Length = 223
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/259 (28%), Positives = 119/259 (45%), Gaps = 47/259 (18%)
Query: 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCY 61
E + D + LR + C +L R GSASW QG
Sbjct: 4 EQKKCDSGDLPSLRRIVCEQGLLSRPDGSASWMQG------------------------- 38
Query: 62 WVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSI 121
DT VLA VYGP E +KA++EV+ +P+ G G E+ E ++K+T +++
Sbjct: 39 -----DTSVLAGVYGPSEVKVSKEIYDKATLEVMLRPKVGLPGVYERSREQMIKKTCEAV 93
Query: 122 CILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYC 181
+ T++P ++ ++++QV+ D G+LL +NAAC L+DAG+PM L + C G
Sbjct: 94 VLGTLHPRSSITIVLQVITDAGSLLASCLNAACMGLMDAGLPMGSLFCGVTCALDADGNF 153
Query: 182 ILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFH 241
LDPT +E++ A V +I S+ E ++ S G SV+
Sbjct: 154 TLDPTAKQEKE----AQTVLTFAIDSI-------------EKKVLMSSMKGTCSVEQLQQ 196
Query: 242 CLERGRAASAKLSDFLRRS 260
C+ + A+ + F R S
Sbjct: 197 CVAASQRAADTIFQFYRDS 215
>gi|170067650|ref|XP_001868566.1| exosome complex exonuclease RRP46 [Culex quinquefasciatus]
gi|167863769|gb|EDS27152.1| exosome complex exonuclease RRP46 [Culex quinquefasciatus]
Length = 217
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 110/247 (44%), Gaps = 47/247 (19%)
Query: 12 NQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVL 71
+ LRP+ C +IL R+ GSA +QG +T V
Sbjct: 8 DSLRPMFCELNILTRSDGSAMLTQG------------------------------ETAVT 37
Query: 72 AAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTT 131
A+V GP ++ N EK+ +E+ ++PR+G ++ E +++ T +S + ++P T
Sbjct: 38 ASVNGPVEVKLQHMNVEKSYVEIHFRPRSGMGSVNDRLLENLIRNTYESALLTALHPRTA 97
Query: 132 TSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQ 191
S+ IQ + D G L+ CAINA C AL+D+GI MK+L A+ E G LDP +L +
Sbjct: 98 VSIQIQEMQDRGGLVACAINAVCLALIDSGIEMKYLVAAVHSVLDEEGGITLDPDELRAK 157
Query: 192 KMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASA 251
+ VF N+ ++ THG + + Y L A
Sbjct: 158 DARARFTFVFENT-----------------SRNTVSIYTHGKFTSEQYHRALRMSTDAVG 200
Query: 252 KLSDFLR 258
++ DF R
Sbjct: 201 RVFDFYR 207
>gi|157114354|ref|XP_001658056.1| hypothetical protein AaeL_AAEL006819 [Aedes aegypti]
gi|108877318|gb|EAT41543.1| AAEL006819-PA [Aedes aegypti]
Length = 217
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 111/248 (44%), Gaps = 47/248 (18%)
Query: 9 RNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDT 68
++ N LRP+ C ++L R+ GSA +QG +T
Sbjct: 5 KSENSLRPMHCELNLLTRSDGSAMLTQG------------------------------ET 34
Query: 69 KVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINP 128
V+A+V GP ++ N EK+ I++ +KPR+G ++ E ++K T +S + ++P
Sbjct: 35 AVVASVNGPIEVKLQHMNVEKSHIDIYFKPRSGMGSVNDRLLESLIKNTYESAILTGLHP 94
Query: 129 NTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKL 188
T S+ +Q + D G L+ CAINA C AL+++GI MK L A+ E G +LDP L
Sbjct: 95 RTAISIQLQEMQDQGGLVACAINAVCLALMNSGIEMKFLVAAVHSVLREDGDIVLDPDAL 154
Query: 189 EEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRA 248
+ + + VF N ++ THG + + Y L+
Sbjct: 155 QSKDARAKFTFVFENCT-----------------RNTVSIYTHGKFTTEQYHRALKMAEE 197
Query: 249 ASAKLSDF 256
A K+ F
Sbjct: 198 AVEKVFGF 205
>gi|354499539|ref|XP_003511866.1| PREDICTED: exosome complex component RRP46-like [Cricetulus
griseus]
Length = 279
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 55/135 (40%), Positives = 82/135 (60%), Gaps = 2/135 (1%)
Query: 67 DTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTI 126
DT VLA VYGP E KA++EVI +P+ G G EK E +++ T +++ + +
Sbjct: 106 DTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLPGVAEKSRERLIRNTCEAVVLGAL 165
Query: 127 NPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPT 186
+P T+ +V++QVV D G+LL C +NAAC ALVDAG+PM+ L + C G +L PT
Sbjct: 166 HPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVPMRALFCGVSCALDSDGNLVLGPT 225
Query: 187 KLEEQKMKGFAYLVF 201
+E++ + A L F
Sbjct: 226 TKQEKEAR--AILTF 238
>gi|346472235|gb|AEO35962.1| hypothetical protein [Amblyomma maculatum]
Length = 226
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 105/202 (51%), Gaps = 17/202 (8%)
Query: 63 VGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSIC 122
+ G+T V A VYGP + E EKA++EV ++ ++G ++ E +++ TL++
Sbjct: 28 LAQGETVVQAGVYGPAEVKQARELHEKATVEVFFRSKSGHQSCSDRLTEKVVRSTLETAM 87
Query: 123 ILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCI 182
+ ++P + S+ Q +H+DG LL C INA+C A++DA + MK A+ + G +
Sbjct: 88 LTALHPRSCISLTCQELHNDGGLLACCINASCLAVIDAAVSMKCHIAAVTAALTQEGTVV 147
Query: 183 LDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHC 242
LDP++ +E++ K L F E E ++++ T G S D++ C
Sbjct: 148 LDPSRQQEEEAKAVCTLSF-----------------ESQESKLVSTHTTGHFSKDEFQKC 190
Query: 243 LERGRAASAKLSDFLRRSLQSK 264
L +AA+ + F + +L+ +
Sbjct: 191 LALCQAAAGDIFAFYQDALERR 212
>gi|301620138|ref|XP_002939437.1| PREDICTED: exosome complex exonuclease RRP46 [Xenopus (Silurana)
tropicalis]
Length = 181
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 97/193 (50%), Gaps = 21/193 (10%)
Query: 71 LAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNT 130
+A VYGP E KA++EVI +P+TG EK E +++ T +S+ I +++P T
Sbjct: 1 MAGVYGPAEIKVSREIHNKATLEVILRPKTGLPAIQEKNQEQLIRETCESVIIGSLHPRT 60
Query: 131 TTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 190
+ ++++Q+V D G+LL C +NAAC L+DAG+PM+ L + C G LDP ++
Sbjct: 61 SITIVLQIVSDAGSLLSCCLNAACMGLMDAGLPMRALFCGVTCAMDNDGTITLDPNFRQQ 120
Query: 191 QKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAAS 250
++ + A L F E E ++ G S + C+ + AS
Sbjct: 121 KESR--AVLTFAI---------------ESTERKVLMMSNRGVYSATELQQCIAAAQIAS 163
Query: 251 AKL----SDFLRR 259
KL DF+RR
Sbjct: 164 EKLFQFYRDFIRR 176
>gi|440796320|gb|ELR17429.1| 3' exoribonuclease family, domain 1 domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 236
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 100/218 (45%), Gaps = 52/218 (23%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFC 60
MEV R+ GR NQLR + +L++ GSA ++
Sbjct: 1 MEVKRSGGRTNNQLRAVTSELGLLNKPDGSAKYT-------------------------- 34
Query: 61 YWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQS 120
+G + V+ AVYGP ++E ++A+I+V W P +G G E+E E+I+ +Q+
Sbjct: 35 ----AGKSAVVVAVYGPIEVKHRDEILDRATIKVHWSPSSGTGGPEEREKEMIVANVVQN 90
Query: 121 ICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKH-------------- 166
I T++P T +++Q +L AINA C ALVDAGIP+K+
Sbjct: 91 AIIATLHPRTLIEIVVQ-------MLAAAINATCLALVDAGIPLKYRPAHPTLDFALELL 143
Query: 167 -LAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPN 203
++ C A++G +LDP EE + F N
Sbjct: 144 SWIASVTCAIAQNGVFVLDPDLAEESAARAVLLFAFNN 181
>gi|443689973|gb|ELT92240.1| hypothetical protein CAPTEDRAFT_152902 [Capitella teleta]
Length = 218
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 103/200 (51%), Gaps = 16/200 (8%)
Query: 66 GDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILT 125
G + LAAVYGP+ E ++A++++++KP+TG G + E I++ T +++ ++
Sbjct: 34 GTSTSLAAVYGPRDVRISKELVDRATMDIVYKPKTGLPGNDARFLERIIRSTCENMILVK 93
Query: 126 INPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDP 185
+P T+ VI+Q + D G+ L C +NA AL+DA +P+K+ A+ C G LDP
Sbjct: 94 QHPRTSIDVIVQEMQDSGSYLSCCLNAVTLALLDACLPLKYTVAAVTCIINREGELHLDP 153
Query: 186 TKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLER 245
TK +E ++ A++ F + ++ +I G + Y CL
Sbjct: 154 TKSQEAELNQ-AHMTFV---------------FDSIDRNVIACYAQGCYTTQQYHTCLMA 197
Query: 246 GRAASAKLSDFLRRSLQSKL 265
+AAS ++ + R +L KL
Sbjct: 198 CQAASKEVFSYYREALTKKL 217
>gi|357620682|gb|EHJ72793.1| exosome complex exonuclease RRP46 [Danaus plexippus]
Length = 205
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 100/193 (51%), Gaps = 17/193 (8%)
Query: 66 GDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILT 125
G+T V +V GP +++ EKA++E+++ + G+ ++ E ++++T ++ +
Sbjct: 20 GETVVTVSVNGPLDIKTTSQSIEKATLEILFSSKGGKPSVADRFKENVIRQTCETAILGC 79
Query: 126 INPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDP 185
+ P T ++ IQ + D G LL CAIN AC AL+++GI + H+ A+ C E+G +L+P
Sbjct: 80 LYPRTGITITIQELEDYGGLLSCAINCACLALLNSGISLHHVVAAVSCIVDETGNIVLEP 139
Query: 186 TKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLER 245
+ + Q Y VF + + ++T T GA+ D Y LE+
Sbjct: 140 SYQQVQSATTKLYFVF-----------------DSRDKNLVTGFTEGAVGEDMYLEALEK 182
Query: 246 GRAASAKLSDFLR 258
RAAS + DF R
Sbjct: 183 CRAASDLVFDFYR 195
>gi|395751236|ref|XP_002829311.2| PREDICTED: exosome complex component RRP46, partial [Pongo abelii]
Length = 207
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 84/157 (53%), Gaps = 24/157 (15%)
Query: 67 DTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTG----------------------QIG 104
DT VLA VYGP E KA++EVI +P+ G G
Sbjct: 1 DTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLPAGVSGWQSGLAFFPLESSIIPAG 60
Query: 105 KPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPM 164
EK E +++ T +++ + T++P T+ +V++QVV D G+LL C +NAAC ALVDAG+PM
Sbjct: 61 VAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVPM 120
Query: 165 KHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVF 201
+ L + C G +LDPT +E++ + A L F
Sbjct: 121 RALFCGVTCALDSDGTLMLDPTSKQEKEAR--AVLTF 155
>gi|325182492|emb|CCA16947.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 251
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 80/287 (27%), Positives = 123/287 (42%), Gaps = 71/287 (24%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGRN N+LR ++ LHRA GS++ +
Sbjct: 6 RDDGRNCNELRQISSEQGTLHRADGSSNLT------------------------------ 35
Query: 65 SGDTKVLAAVYGP-KAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICI 123
GDT VL AVYGP +A +NE +KA+I+V + G EKE E+I++R + I
Sbjct: 36 FGDTTVLVAVYGPGQAKIARNELVDKAAIDVCVRLNQGIAAAKEKEMELIVRRLYEPIIQ 95
Query: 124 LTINPNTTTSVIIQVVHDDGA-------------------------LLPCAINAACAALV 158
P T S++IQ++ D G+ L+ INA AL+
Sbjct: 96 RQEFPRTVISIVIQIIEDAGSISSLLTSHTIGFGSCVEFLDRLCLYLVSAVINAVTMALM 155
Query: 159 DAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQG 218
DA I M + + CC E G +LDP++ EE + +S++ SS
Sbjct: 156 DAEIAMLGVVTSTTCCLTEDGSVLLDPSQKEEAE------------CISLVICASSF--- 200
Query: 219 EPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKL 265
+ E G++ + G +S + F C E + S + F+R+S +L
Sbjct: 201 QLAEGGVLFLSSEGPLSEEQLFSCAEACKRGSKCVETFIRQSYSKRL 247
>gi|219130014|ref|XP_002185170.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403349|gb|EEC43302.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 140
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 86/171 (50%), Gaps = 31/171 (18%)
Query: 3 VDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYW 62
+DRADGR + LRPL+C LH A GSA W
Sbjct: 1 MDRADGRLASTLRPLSCELGTLHNADGSALWK---------------------------- 32
Query: 63 VGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSIC 122
SG T+VLAAV+GP A + +KA I +I K T + E+E+E + + L +
Sbjct: 33 --SGSTQVLAAVHGPVAPRQPQHETQKAKISIIIKSGT-TVNTLEREWEAFITKALTACL 89
Query: 123 ILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
+ P + +++Q++ DG++L A+N A AAL+DAGI MK L VA+ C
Sbjct: 90 VTEQYPRSVIQIVLQILSADGSVLGAALNGAVAALMDAGIAMKVLPVAVTC 140
>gi|297822455|ref|XP_002879110.1| hypothetical protein ARALYDRAFT_320572 [Arabidopsis lyrata subsp.
lyrata]
gi|297324949|gb|EFH55369.1| hypothetical protein ARALYDRAFT_320572 [Arabidopsis lyrata subsp.
lyrata]
Length = 128
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/96 (59%), Positives = 62/96 (64%), Gaps = 16/96 (16%)
Query: 66 GDTKVLAAVYGPKAGTKKNENPEKASIEVIW-KPRTGQI---------------GKPEKE 109
GDTKVL A Y PKAGTKKNE EK EVIW KP I K E+E
Sbjct: 2 GDTKVLTAQYEPKAGTKKNETAEKTCFEVIWNKPDRLVIVNAFSFSEGGLFYCLRKVERE 61
Query: 110 YEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 145
YE ILKRTLQSIC+LT+ PNTTTSVIIQVVH G++
Sbjct: 62 YETILKRTLQSICVLTVVPNTTTSVIIQVVHVGGSV 97
>gi|383852760|ref|XP_003701893.1| PREDICTED: exosome complex component RRP46-like [Megachile
rotundata]
Length = 220
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 75/257 (29%), Positives = 112/257 (43%), Gaps = 52/257 (20%)
Query: 9 RNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDT 68
N LRP+ C + L GSA QG DT
Sbjct: 7 ENEFVLRPINCEMNQLSMPDGSAMLMQG------------------------------DT 36
Query: 69 KVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINP 128
V+A VYGP + +KA +EV + P G ++ E+ +K T ++ I+T +P
Sbjct: 37 AVIAGVYGPVEAKPQKMIYDKAFVEVSYTPIKGPAKVDDRMTEMYIKETCETAIIVTFHP 96
Query: 129 NTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAES-GYCILDP-- 185
T + IQ + D G LL C INAAC AL++A IPMK A+ C ES ILDP
Sbjct: 97 ATAICINIQELEDSGGLLACIINAACLALINAAIPMKFTIAAVSCMIEESTDNIILDPDN 156
Query: 186 TKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLER 245
T+LE+ + + F Y + M+ +I T G + ++F +++
Sbjct: 157 TQLEDARAE-FTYAF------------------DSMKKDVICCHTVGQFTEAEFFETIDK 197
Query: 246 GRAASAKLSDFLRRSLQ 262
R AS ++ DF R ++
Sbjct: 198 CRQASQRIFDFYRNLVK 214
>gi|321475274|gb|EFX86237.1| hypothetical protein DAPPUDRAFT_193332 [Daphnia pulex]
Length = 218
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 85/174 (48%), Gaps = 30/174 (17%)
Query: 12 NQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVL 71
N +R L C S+L RA GS +SQG +T V+
Sbjct: 6 NSIRALKCEQSVLSRADGSVMFSQG------------------------------NTVVM 35
Query: 72 AAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTT 131
A+VYGP + E ++ IE+ +KP+TG G E+ E ++K T I + ++P T
Sbjct: 36 ASVYGPLEAKIQKELSDRMYIELNYKPKTGMPGVAERGKEKLIKTTCNHIILTNLHPRTA 95
Query: 132 TSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDP 185
+ +Q + D G LL +INA C AL+D+G+P++ L A+ C + ILDP
Sbjct: 96 VCITVQEMQDGGTLLAASINAVCLALLDSGLPLQCLVAAVTCLVDKKDRIILDP 149
>gi|15225666|ref|NP_178726.1| uncharacterized protein [Arabidopsis thaliana]
gi|3805760|gb|AAC69116.1| unknown protein [Arabidopsis thaliana]
gi|330250939|gb|AEC06033.1| uncharacterized protein [Arabidopsis thaliana]
Length = 150
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 55/101 (54%), Positives = 66/101 (65%), Gaps = 17/101 (16%)
Query: 62 WVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVI--WKPRTG---------------QIG 104
++ S DTKVL+A YGPKA TKKNEN EKA ++ KP ++
Sbjct: 19 FIFSEDTKVLSAQYGPKARTKKNENAEKACLKSYGSLKPDRLVIVNAFSFSERGLFCRLR 78
Query: 105 KPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 145
K EKEYE ILKRTLQSIC+L + PNTTTSVIIQVVHD G++
Sbjct: 79 KVEKEYETILKRTLQSICVLRVVPNTTTSVIIQVVHDGGSV 119
>gi|442750019|gb|JAA67169.1| Putative exosomal 3'-5' exoribonuclease complex subunit rrp41
[Ixodes ricinus]
Length = 223
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 119/264 (45%), Gaps = 47/264 (17%)
Query: 10 NPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTK 69
NP +LR LA + R GSA + G+T
Sbjct: 5 NPARLRKLAVKFDNVSRPDGSA------------------------------LLAHGETV 34
Query: 70 VLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPN 129
+ A VYGP + E EKA++EV ++ +TG ++ E +++ TL+++ ++ ++P
Sbjct: 35 IQAGVYGPIEVRQARELAEKATVEVFYRSKTGHQNCSDRLVEKVVRSTLETVMLVALHPR 94
Query: 130 TTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLE 189
T S+ +Q +H+DG+LL C INAAC A VDA I MK A+ +G +LDP K +
Sbjct: 95 TCISISLQELHNDGSLLACCINAACLAAVDAAIAMKCQVAAVSAAITHTGIIVLDPNKKQ 154
Query: 190 EQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAA 249
E++ + F E + ++++ T G S ++ CL RAA
Sbjct: 155 EEEARATCTFSF-----------------ESRDSKVVSTRTTGRFSAQEFQKCLSACRAA 197
Query: 250 SAKLSDFLRRSLQSKLPGDLSKAE 273
+A + F R + + + L E
Sbjct: 198 AADIFAFYRDAFRRRYSKCLEAGE 221
>gi|297815448|ref|XP_002875607.1| hypothetical protein ARALYDRAFT_484800 [Arabidopsis lyrata subsp.
lyrata]
gi|297321445|gb|EFH51866.1| hypothetical protein ARALYDRAFT_484800 [Arabidopsis lyrata subsp.
lyrata]
Length = 127
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/96 (55%), Positives = 63/96 (65%), Gaps = 17/96 (17%)
Query: 67 DTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQI-----------------GKPEKE 109
DTKV+AA Y PKAGTK+NEN EKA EV + ++ K E+E
Sbjct: 20 DTKVIAAEYRPKAGTKENENAEKACFEVYGNLKPDRLVIVNALTCSKGGLFCCLRKVERE 79
Query: 110 YEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 145
YE ILKRTLQSIC+LT+ PNTTTSVIIQVVHD G++
Sbjct: 80 YETILKRTLQSICVLTVVPNTTTSVIIQVVHDGGSV 115
>gi|327276287|ref|XP_003222901.1| PREDICTED: exosome complex exonuclease RRP46-like isoform 2 [Anolis
carolinensis]
Length = 262
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 75/298 (25%), Positives = 120/298 (40%), Gaps = 86/298 (28%)
Query: 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCY 61
E + D + LR + C +L R GSASW QG
Sbjct: 4 EQKKCDSGDLPSLRRIVCEQGLLSRPDGSASWMQG------------------------- 38
Query: 62 WVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTG-------------------- 101
DT VLA VYGP E +KA++EV+ +P+ G
Sbjct: 39 -----DTSVLAGVYGPSEVKVSKEIYDKATLEVMLRPKVGLPGLQPSLPRSAGVSPNYNS 93
Query: 102 -------------------QIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDD 142
+ G E+ E ++K+T +++ + T++P ++ ++++QV+ D
Sbjct: 94 DNSIFVPEDLEVLKIKQSSEQGVYERSREQMIKKTCEAVVLGTLHPRSSITIVLQVITDA 153
Query: 143 GALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFP 202
G+LL +NAAC L+DAG+PM L + C G LDPT +E++ A V
Sbjct: 154 GSLLASCLNAACMGLMDAGLPMGSLFCGVTCALDADGNFTLDPTAKQEKE----AQTVLT 209
Query: 203 NSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRS 260
+I S+ E ++ S G SV+ C+ + A+ + F R S
Sbjct: 210 FAIDSI-------------EKKVLMSSMKGTCSVEQLQQCVAASQRAADTIFQFYRDS 254
>gi|198433180|ref|XP_002130542.1| PREDICTED: similar to predicted protein isoform 1 [Ciona
intestinalis]
Length = 235
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 104/217 (47%), Gaps = 26/217 (11%)
Query: 62 WVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSI 121
+ G+T V+ AVYGP + + +KA +EV ++P+ G EK E ++ ++
Sbjct: 34 FYSQGETSVMVAVYGPGDLKETKQEIDKALVEVDFRPKLGSPTVNEKYLERFVQGVCENA 93
Query: 122 CILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC---SAES 178
+L ++P T ++I+Q++ D G+LL CAINA C AL DAG+ MKHL VA+ +ES
Sbjct: 94 IMLALHPRTAFAIIVQIMQDQGSLLSCAINAVCVALQDAGVSMKHLPVAVTVALRKESES 153
Query: 179 ------GYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHG 232
I++PT EE + VF + + ++ + G
Sbjct: 154 ELEDATDVLIINPTIKEESESFSILTFVF-----------------DSVNKNLLCMHSQG 196
Query: 233 AMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGDL 269
+ + CL+ + A+ ++ F R S+ K+ L
Sbjct: 197 PLLPKQHERCLKAAKEATEEVLKFFRDSVTQKVAAGL 233
>gi|326430537|gb|EGD76107.1| hypothetical protein PTSG_00813 [Salpingoeca sp. ATCC 50818]
Length = 219
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 90/193 (46%), Gaps = 42/193 (21%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +LRP+ C ++L + GSAS+S
Sbjct: 5 RVDGRKAMELRPMQCDLALLDKPDGSASFS------------------------------ 34
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICIL 124
GD+ V+AAVYGP+ E +++++EV W P+ E L+ L +
Sbjct: 35 FGDSSVMAAVYGPRDVPLSREKHDRSTVEVAWH------SAPDNEQGAALQSHLTEFVVN 88
Query: 125 TIN-----PNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESG 179
+ P + V+IQ +++DG +L CAINA C AL+DAGI + + A C+ G
Sbjct: 89 ALASIHDFPRSAIRVVIQELNNDGGMLACAINATCLALMDAGISLTAM-FAAASCAVVDG 147
Query: 180 YCILDPTKLEEQK 192
ILDPT +E+ K
Sbjct: 148 QLILDPTLIEQNK 160
>gi|380026087|ref|XP_003696793.1| PREDICTED: exosome complex component RRP46-like [Apis florea]
Length = 223
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 108/251 (43%), Gaps = 50/251 (19%)
Query: 14 LRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLAA 73
LRP+ C + L GSA QG +T V+A
Sbjct: 15 LRPMNCELNQLSMPDGSAMLMQG------------------------------NTAVVAG 44
Query: 74 VYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTS 133
+YGP + +KASIEV + P G ++ E+ +K T ++ I+T +P T
Sbjct: 45 IYGPIEAKPQKMIYDKASIEVSYIPVKGPAKIDDRMTEMYIKETCEAAIIVTFHPATAIC 104
Query: 134 VIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAE-SGYCILDPTKLEEQK 192
+ IQ + D G +L C INAAC AL++AGIPMK A+ C E + ILDP + Q
Sbjct: 105 INIQEMEDSGGMLACTINAACLALINAGIPMKFTIAAVNCMIQEGTNNIILDPDSTQLQD 164
Query: 193 MKG-FAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASA 251
K F Y + ++ II T G + +++ +++ + AS
Sbjct: 165 AKAEFTYAF------------------DSVKKDIICCYTAGCFTEEEFLETIDKCKQASQ 206
Query: 252 KLSDFLRRSLQ 262
+ DF R ++
Sbjct: 207 YVFDFYRNLVK 217
>gi|427786915|gb|JAA58909.1| Putative rrp46 subunit of eukaryotic exosome [Rhipicephalus
pulchellus]
Length = 226
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 75/264 (28%), Positives = 121/264 (45%), Gaps = 52/264 (19%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFC 60
ME +R GR LR LA S L R GSA +QG
Sbjct: 1 METNRT-GR----LRKLAAKFSNLSRPDGSAILAQG------------------------ 31
Query: 61 YWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQS 120
+T V A VYGP + E+PEKA++EV ++ ++GQ ++ E +++ TL++
Sbjct: 32 ------ETVVQAGVYGPVEVKQMREHPEKATVEVFFRSKSGQQSCSDRMSEKVIRSTLET 85
Query: 121 ICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGY 180
+ ++P + S+ Q H++G LL CAINAAC A +DA + MK A+ +G
Sbjct: 86 AMLTALHPRSCISLTCQEFHNNGGLLACAINAACLAAIDAAVSMKCHIAAVTAAITNTGI 145
Query: 181 CILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYF 240
+LDP +EQ+ + F E E ++++ T G S +++
Sbjct: 146 IVLDPDGQQEQEARAVCTFSF-----------------ESQESKLVSTYTSGKFSKEEFQ 188
Query: 241 HCLERGRAASAKLSDFLRRSLQSK 264
CL +AA+ + F + +LQ +
Sbjct: 189 KCLALCQAAAGDIFAFYQDALQKR 212
>gi|427786901|gb|JAA58902.1| Putative rrp46 subunit of eukaryotic exosome [Rhipicephalus
pulchellus]
Length = 231
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 104/202 (51%), Gaps = 17/202 (8%)
Query: 63 VGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSIC 122
+ G+T V A VYGP + E+PEKA++EV ++ ++GQ ++ E +++ TL++
Sbjct: 33 LAQGETVVQAGVYGPVEVKQMREHPEKATVEVFFRSKSGQQSCSDRMSEKVIRSTLETAM 92
Query: 123 ILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCI 182
+ ++P + S+ Q H++G LL CAINAAC A +DA + MK A+ +G +
Sbjct: 93 LTALHPRSCISLTCQEFHNNGGLLACAINAACLAAIDAAVSMKCHIAAVTAAITNTGIIV 152
Query: 183 LDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHC 242
LDP +EQ+ + F E E ++++ T G S +++ C
Sbjct: 153 LDPDGQQEQEARAVCTFSF-----------------ESQESKLVSTYTSGKFSKEEFQRC 195
Query: 243 LERGRAASAKLSDFLRRSLQSK 264
L +AA+ + F + +LQ +
Sbjct: 196 LALCQAAAGDIFAFYQDALQKR 217
>gi|350422333|ref|XP_003493132.1| PREDICTED: exosome complex component RRP46-like [Bombus impatiens]
Length = 220
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 105/248 (42%), Gaps = 48/248 (19%)
Query: 13 QLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLA 72
+LRP+ C + L GSA QG +T V+A
Sbjct: 11 RLRPMNCELNQLSMPDGSAMLMQG------------------------------NTAVVA 40
Query: 73 AVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTT 132
+YGP + +KAS+EV + P G ++ E+ +K T ++ I+T +P T
Sbjct: 41 GIYGPIEAKPQKMIYDKASVEVSYSPIKGPAKVDDRMTEMYIKETCEAAIIVTFHPATAI 100
Query: 133 SVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAE-SGYCILDPTKLEEQ 191
+ IQ + D G +L C INAAC AL++AGIPMK A+ C E + +LDP + Q
Sbjct: 101 CINIQELEDSGGILACTINAACLALINAGIPMKFTIAAVNCMIQEGTENIVLDPDTTQLQ 160
Query: 192 KMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASA 251
+ + F + M +I T G+ + ++ +E+ + S
Sbjct: 161 EARAEFTFAF-----------------DSMNKDVICCNTVGSFTETEFLEAMEKCKQVSQ 203
Query: 252 KLSDFLRR 259
+ DF R
Sbjct: 204 YVFDFYRN 211
>gi|328784959|ref|XP_624485.2| PREDICTED: exosome complex exonuclease RRP46 [Apis mellifera]
Length = 229
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 105/248 (42%), Gaps = 50/248 (20%)
Query: 14 LRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLAA 73
LRP+ C + L GSA QG +T +A
Sbjct: 21 LRPMNCELNQLSMPDGSAMLMQG------------------------------NTAAVAG 50
Query: 74 VYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTS 133
+YGP + +KASIEV + P G ++ E+ +K T ++ I+T +P T
Sbjct: 51 IYGPIEAKLQKMIYDKASIEVSYIPVKGPAKIDDRMTEMYIKETCEAAIIVTFHPATAIC 110
Query: 134 VIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAE-SGYCILDPTKLEEQK 192
+ IQ + D G +L C INAAC AL++AGIPMK A+ C E + ILDP + Q
Sbjct: 111 INIQEMEDSGGMLACTINAACLALINAGIPMKFTIAAVNCMIQEGTNNIILDPDSTQLQD 170
Query: 193 MKG-FAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASA 251
K F Y + ++ II T G + +++ +++ + AS
Sbjct: 171 AKAEFTYAF------------------DSVKKDIICCYTAGCFTEEEFLETIDKCKQASQ 212
Query: 252 KLSDFLRR 259
+ DF R
Sbjct: 213 YVFDFYRN 220
>gi|413949053|gb|AFW81702.1| hypothetical protein ZEAMMB73_884899 [Zea mays]
Length = 405
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/64 (68%), Positives = 53/64 (82%), Gaps = 7/64 (10%)
Query: 104 GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIP 163
G+ E+EYE+ LKRTLQSIC+LT++PNTTTSV++Q LLPCAINA+CAAL AGIP
Sbjct: 109 GRQEREYEMTLKRTLQSICLLTVHPNTTTSVVLQ-------LLPCAINASCAALAFAGIP 161
Query: 164 MKHL 167
MKHL
Sbjct: 162 MKHL 165
>gi|307185835|gb|EFN71676.1| Exosome complex exonuclease RRP46 [Camponotus floridanus]
Length = 220
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 89/187 (47%), Gaps = 32/187 (17%)
Query: 14 LRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLAA 73
LRP+ C ++L R+ GS + QG DT ++A
Sbjct: 12 LRPMNCEINLLSRSDGSTMFMQG------------------------------DTTIVAG 41
Query: 74 VYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTS 133
+ GP + +K SIEV + P TG ++ E ++ + +S +++++PNT
Sbjct: 42 INGPMEVKSQKMAYDKLSIEVTYTPLTGPAKVDDRLIETYIRESCESAILVSLHPNTMIC 101
Query: 134 VIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC-CSAESGYCILDPTKLEEQK 192
+ +Q V D G LL CAINA+C AL+++G+ MK A+ C E+G I+DP + +
Sbjct: 102 INLQEVQDSGGLLACAINASCLALINSGLSMKFTIAAVSCMIEKETGKIIMDPDNTQLKN 161
Query: 193 MKG-FAY 198
K F Y
Sbjct: 162 AKAEFTY 168
>gi|159469337|ref|XP_001692824.1| exosome complex exonuclease [Chlamydomonas reinhardtii]
gi|158278077|gb|EDP03843.1| exosome complex exonuclease [Chlamydomonas reinhardtii]
Length = 242
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 96/189 (50%), Gaps = 30/189 (15%)
Query: 15 RPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLAAV 74
R L C ++L RA GSA W+Q G + VLAAV
Sbjct: 3 RTLVCERAVLDRADGSAKWTQ-----------------------------EGSS-VLAAV 32
Query: 75 YGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSV 134
YGP+ + E+ E+A +EV++KPR G G ++ E+ ++ L+ + L + P T+ V
Sbjct: 33 YGPRQAKLQKEDAERAVVEVVFKPRAGLQGHEDRSLELEIRGILEGVIPLGMFPRTSVMV 92
Query: 135 IIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMK 194
++QV+ DDG L CA+NAA AALVDAG+P+ + ++ C +LDP LEEQ
Sbjct: 93 VLQVLQDDGGALSCALNAAAAALVDAGVPLNSMFSSVSCVLTSDRRLVLDPDALEEQAAA 152
Query: 195 GFAYLVFPN 203
+P+
Sbjct: 153 ARFCFTYPH 161
>gi|340714151|ref|XP_003395595.1| PREDICTED: exosome complex component RRP46-like [Bombus terrestris]
Length = 220
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 107/251 (42%), Gaps = 48/251 (19%)
Query: 13 QLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLA 72
+LRP+ C + L GSA QG +T V+A
Sbjct: 11 RLRPMNCELNQLSMPDGSAMLMQG------------------------------NTTVVA 40
Query: 73 AVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTT 132
+YGP + +KAS+EV + P G ++ E+ +K T ++ I+T +P T
Sbjct: 41 GIYGPIEAKPQKMIYDKASVEVSYSPIKGPAKVDDRMTEMYIKETCEAAIIVTFHPATAI 100
Query: 133 SVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAE-SGYCILDPTKLEEQ 191
+ +Q + D G +L C INAAC AL++AGIPMK A+ C E + I+DP + Q
Sbjct: 101 CINVQELEDSGGILACTINAACLALINAGIPMKFTIAAVNCMIQEGTENIIVDPDTTQLQ 160
Query: 192 KMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASA 251
+ + F + M+ +I T G + ++ +E+ + S
Sbjct: 161 EARAEFTFAF-----------------DSMKKDVICCNTVGCFTETEFLEAMEKCKHVSQ 203
Query: 252 KLSDFLRRSLQ 262
+ DF R ++
Sbjct: 204 YIFDFYRNLVK 214
>gi|301095816|ref|XP_002897007.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262108436|gb|EEY66488.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 171
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 84/177 (47%), Gaps = 39/177 (22%)
Query: 3 VDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYW 62
+ R DGR N+LRP A L RA GSA S G
Sbjct: 6 LQRQDGRAGNELRPFASEQGALFRADGSARMSHG-------------------------- 39
Query: 63 VGSGDTKVLAAVYGP-KAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSI 121
+ VLAAVYGP +A + EN +KA+++V +K G + EKEYE I+++T +
Sbjct: 40 ----SSTVLAAVYGPGQARNWRAENTDKATLDVCFKLEKGIMTSKEKEYEQIIRQTFAPV 95
Query: 122 CILTINPNTTTSVIIQVVHDDGA--------LLPCAINAACAALVDAGIPMKHLAVA 170
+ P S+++QV+ D+G+ + AINA AL+DAG+PM + A
Sbjct: 96 VLTDSFPRAVISIVVQVIEDNGSISFPLFLIIAALAINAVSLALMDAGVPMLSVVTA 152
>gi|345489938|ref|XP_003426267.1| PREDICTED: exosome complex component RRP46-like [Nasonia
vitripennis]
Length = 216
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 103/246 (41%), Gaps = 48/246 (19%)
Query: 14 LRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLAA 73
LRPL C + L GS + QG DT VLA
Sbjct: 8 LRPLNCELNYLSVPDGSTMFMQG------------------------------DTSVLAG 37
Query: 74 VYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTS 133
VYGP + KA++E + P G ++ E+ ++ T + + +++P T S
Sbjct: 38 VYGPVEAKLQKMFHNKATVEATFGPIKGPPSIDDRFVELYVRDTCEGAILTSLHPAATVS 97
Query: 134 VIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC-CSAESGYCILDPTKLEEQK 192
+ IQ + D G LL C+INAAC AL+++ I MK A+CC SG ++DP+ ++ Q
Sbjct: 98 INIQELQDCGGLLACSINAACLALINSSIAMKFTFAAVCCMIDKNSGDIVIDPSLIQTQN 157
Query: 193 MKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAK 252
K VF + + +I T G + +D + + + AS
Sbjct: 158 AKATFTCVF-----------------DSVNKELICCQTSGQFTEEDLTESINKCKEASKY 200
Query: 253 LSDFLR 258
+ DF R
Sbjct: 201 IFDFYR 206
>gi|322795793|gb|EFZ18472.1| hypothetical protein SINV_11798 [Solenopsis invicta]
Length = 220
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 87/187 (46%), Gaps = 32/187 (17%)
Query: 14 LRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLAA 73
LRP+ C ++L R+ GS + QG DT ++
Sbjct: 12 LRPINCEINLLSRSDGSTMFMQG------------------------------DTTIIVG 41
Query: 74 VYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTS 133
V GP + ++ASIEV + P G ++ E +K T +S +++ +PNT
Sbjct: 42 VNGPLETRSQKMAYDRASIEVTYTPLKGPAKIDDRLIETYIKETCESAILVSFHPNTMVC 101
Query: 134 VIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC-CSAESGYCILDPTKLEEQK 192
+ +Q + D G LL CAINA+C AL+++G+ +K A+ C E+G I+DP + Q
Sbjct: 102 INLQEMQDSGGLLACAINASCLALINSGLSLKFTIAAVSCMIEKETGQVIIDPDSSQLQN 161
Query: 193 MKG-FAY 198
K F Y
Sbjct: 162 AKAEFTY 168
>gi|332020128|gb|EGI60572.1| Exosome complex exonuclease RRP46 [Acromyrmex echinatior]
Length = 220
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 82/173 (47%), Gaps = 31/173 (17%)
Query: 14 LRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLAA 73
LRP+ C ++L R+ GS + QG DT ++A
Sbjct: 12 LRPINCEINLLSRSDGSTMFMQG------------------------------DTTIIAG 41
Query: 74 VYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTS 133
V GP + ++ SIEV + P G ++ E +K T +S +++ +PNT
Sbjct: 42 VNGPLEAKSQKMAYDRVSIEVTYTPLKGPAKVDDRLIETYIKETCESAILVSFHPNTMVC 101
Query: 134 VIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC-CSAESGYCILDP 185
+ +Q + D G LL CAINA+C AL+++G+ M+ AI C E+G I+DP
Sbjct: 102 INLQEMQDSGGLLACAINASCLALINSGLSMRFTVAAISCMIEKETGDIIMDP 154
>gi|198433182|ref|XP_002130561.1| PREDICTED: similar to predicted protein isoform 2 [Ciona
intestinalis]
Length = 193
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 99/208 (47%), Gaps = 26/208 (12%)
Query: 71 LAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNT 130
+ AVYGP + + +KA +EV ++P+ G EK E ++ ++ +L ++P T
Sbjct: 1 MVAVYGPGDLKETKQEIDKALVEVDFRPKLGSPTVNEKYLERFVQGVCENAIMLALHPRT 60
Query: 131 TTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC---SAES------GYC 181
++I+Q++ D G+LL CAINA C AL DAG+ MKHL VA+ +ES
Sbjct: 61 AFAIIVQIMQDQGSLLSCAINAVCVALQDAGVSMKHLPVAVTVALRKESESELEDATDVL 120
Query: 182 ILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFH 241
I++PT EE + VF + + ++ + G + +
Sbjct: 121 IINPTIKEESESFSILTFVF-----------------DSVNKNLLCMHSQGPLLPKQHER 163
Query: 242 CLERGRAASAKLSDFLRRSLQSKLPGDL 269
CL+ + A+ ++ F R S+ K+ L
Sbjct: 164 CLKAAKEATEEVLKFFRDSVTQKVAAGL 191
>gi|422294508|gb|EKU21808.1| exosome complex component RRP41 [Nannochloropsis gaditana CCMP526]
Length = 249
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 110/250 (44%), Gaps = 47/250 (18%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR PN+LR + C+ A GSAS QG
Sbjct: 15 RTDGRRPNELRRVHCTLGTYSNADGSASLKQG---------------------------- 46
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASI---EVIWKPRTGQIGKPEK-------EYEIIL 114
T+VLA V+GP T+++E I E P +G K + E + L
Sbjct: 47 --QTEVLAIVHGPHEVTRRSEVQHDKCIIECEFYRTPFSGFDRKKRRPTDRASLEASLAL 104
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
K+T ++ + + P T + + V+ DG++LP AINA ALVDAG+ MK + A C
Sbjct: 105 KQTFETAVMRNLYPRTQVDIQVYVLQGDGSILPTAINAVSLALVDAGVAMKEMVTA-CSV 163
Query: 175 SAESGYCILDPTKLEEQKMKGFAYL---VFPNSILSVLPEGSSLVQGEPMEHGIITSVTH 231
+ +LD T E+ G AY+ FP +L + + ++GE +E ++T++
Sbjct: 164 ALLDKQPVLDVTYKEQS--SGGAYMPLAAFPIHGEIILIQCEARLEGERLEEMMLTAM-E 220
Query: 232 GAMSVDDYFH 241
G+ V F
Sbjct: 221 GSRQVSQLFQ 230
>gi|422295380|gb|EKU22679.1| exosome complex component RRP46, partial [Nannochloropsis gaditana
CCMP526]
Length = 244
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 91/213 (42%), Gaps = 55/213 (25%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R D R NQLRP C L+RA GSA ++QG
Sbjct: 27 RPDRRLANQLRPPMCELGPLNRADGSARFAQG---------------------------- 58
Query: 65 SGDTKVLAAVYGPKAGT-KKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICI 123
T VLAAVYGP A + E E A++EV P G EKE E +K L++
Sbjct: 59 --QTSVLAAVYGPAAPRFSRKERVEGAAVEVTVHPHYGLATSSEKEKEGAVKALLEAAIC 116
Query: 124 LTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKH--LAVAICCCSAESG-- 179
L P T VI QV D+G L+ C +NAA A+++AGI MK+ L V++ S S
Sbjct: 117 LERFPRTVIHVICQVYEDNGGLMACLMNAASLAVINAGIDMKYVPLTVSLALISPPSATM 176
Query: 180 --------------------YCILDPTKLEEQK 192
Y +LDP EE++
Sbjct: 177 KALPSLPPSSSTTAPTSSSTYLLLDPINEEERQ 209
>gi|386002838|ref|YP_005921137.1| Exosome complex exonuclease 1 [Methanosaeta harundinacea 6Ac]
gi|357210894|gb|AET65514.1| Exosome complex exonuclease 1 [Methanosaeta harundinacea 6Ac]
Length = 251
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 73/275 (26%), Positives = 112/275 (40%), Gaps = 70/275 (25%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P++LRP+ +L RA GS CY +
Sbjct: 13 RLDGRRPDELRPIKIEVGVLERADGS--------------------------CY----IE 42
Query: 65 SGDTKVLAAVYGP------------KAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEI 112
GD KV+AAVYGP +A + N S+E +P G + YE+
Sbjct: 43 MGDNKVIAAVYGPREVHPRHLQEVTRAIVRYRYNMASFSVEERKRP-----GPDRRSYEV 97
Query: 113 --ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVA 170
+ + L S+ + + P + + ++V+ D INAA AL DAGIPMK L ++
Sbjct: 98 SKVSREALASVILTSYFPRSVVDIFVEVLQADAGTRTAGINAASVALADAGIPMKGL-IS 156
Query: 171 ICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGS-SLVQGEPMEHGIITSV 229
C G +LDP K E+ F P +++ P G +L+Q
Sbjct: 157 SCAAGKVDGEIVLDPMKAEDN----FGEADVP---IAMTPGGEITLLQ------------ 197
Query: 230 THGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSK 264
G +S D++ LE + ++ + RR L +
Sbjct: 198 MDGRLSRDEFRRALELAKVGCQQIYEVQRRVLVDR 232
>gi|389860735|ref|YP_006362975.1| ribosomal RNA-processing protein RRP41/SKI6 [Thermogladius
cellulolyticus 1633]
gi|388525639|gb|AFK50837.1| ribosomal RNA-processing protein RRP41/SKI6 [Thermogladius
cellulolyticus 1633]
Length = 242
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 116/269 (43%), Gaps = 57/269 (21%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P++LRP+ +L A+GSA V
Sbjct: 15 RVDGRKPDELRPIRMEIGVLKNANGSA------------------------------LVE 44
Query: 65 SGDTKVLAAVYGPKAGTKKN-ENPEKASIEVIW--------KPRTGQIGKPEKEYEIILK 115
G TKVLAAVYGP+ K + P++A + V + + ++ + E E +++
Sbjct: 45 YGGTKVLAAVYGPREVIPKAVQLPDRAVLRVRYHMAPFSTTEHKSPAPTRREIELSKVIR 104
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
L+S+ P + V I+V+ DG + AA AL DAGIPMK L +
Sbjct: 105 EALESVVFADQFPRASIDVFIEVIQADGGTRTAGLTAASLALADAGIPMKDLVAGVAVGK 164
Query: 176 AESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMS 235
E G +LD +LE++ + + LP G ++ GE I+ +G ++
Sbjct: 165 VE-GVLVLDINELEDEYGE------------ADLPVGYAVGIGE-----IVLLQLNGVLT 206
Query: 236 VDDYFHCLERGRAASAKLSDFLRRSLQSK 264
V+++ +E + + K+ ++ +L K
Sbjct: 207 VEEFKKAIELAKRGAEKVYALMKETLHKK 235
>gi|193652700|ref|XP_001948203.1| PREDICTED: exosome complex exonuclease RRP46-like [Acyrthosiphon
pisum]
Length = 211
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 96/201 (47%), Gaps = 16/201 (7%)
Query: 62 WVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSI 121
++ G + V +V GP ++A+++V ++ +TG I +K E I++ T +
Sbjct: 21 YLSQGKSTVSVSVVGPFEPKASKCMYDRATVDVTFRRKTGSITVHDKMLEGIMQSTCEKA 80
Query: 122 CILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYC 181
++ P TT V +Q + D G LL +NA+C L+++GI M HL A+ C E
Sbjct: 81 LVVEQYPRTTIVVTVQEMQDRGNLLSTCLNASCMGLMNSGIAMHHLYAAVSCAVTEKEEI 140
Query: 182 ILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFH 241
IL+P + + + LVF N+ L +TS T G S Y
Sbjct: 141 ILNPDETQINSSVAYLTLVFANTETRCL----------------LTSHTTGEFSQKTYMD 184
Query: 242 CLERGRAASAKLSDFLRRSLQ 262
C+++ AAS ++ +F ++ ++
Sbjct: 185 CMDKCYAASKEVFNFYQKVIK 205
>gi|452825155|gb|EME32153.1| exosome complex component RRP46 [Galdieria sulphuraria]
Length = 217
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 90/209 (43%), Gaps = 38/209 (18%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR ++R C L RA GS QG
Sbjct: 9 RRDGRKAYEIRGFRCELGYLERADGSCRLEQG---------------------------- 40
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICIL 124
T+V+AAVYGP +NE P++ ++V +P G + E LK +
Sbjct: 41 --RTQVVAAVYGPLEARGRNELPDRTFVDVSIRPFQGYTTDYLRLRERELKEIFDATIAT 98
Query: 125 TINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILD 184
I P + +++IQ++ +DG+L+ INA +L+ AGIP LA + +LD
Sbjct: 99 EIQPRSCVTIVIQIIENDGSLMAAVINACMLSLLSAGIPCHWLAASCTVSYRGKDGVLLD 158
Query: 185 PTKLEEQKMKGFAYLVF------PNSILS 207
PT +EE ++G+A V P S+LS
Sbjct: 159 PTLVEE--LEGYATSVISYGYEGPQSVLS 185
>gi|325969194|ref|YP_004245386.1| exosome complex exonuclease 1 [Vulcanisaeta moutnovskia 768-28]
gi|323708397|gb|ADY01884.1| exosome complex exonuclease 1 [Vulcanisaeta moutnovskia 768-28]
Length = 246
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 95/201 (47%), Gaps = 41/201 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R+DGR PN+ RP+ ++ A GSA V
Sbjct: 15 RSDGRLPNEHRPVRMEVGVISNAEGSA------------------------------LVA 44
Query: 65 SGDTKVLAAVYGPKAGTKKN-ENPEKASIEVIWK--PRTGQIGKP-----EKEYEI--IL 114
G+T +LAAVYGP+ +K+ E P+KA + V + P + G+ +E EI ++
Sbjct: 45 YGNTVILAAVYGPREVPQKHLELPDKAILRVRYHMIPFSTSEGRKSPTPSRREIEISKVI 104
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
+ L+ + IL P TT V I+V+ DG+ I AA AL DAGIPM+ L V +
Sbjct: 105 RTALEPVVILERFPRTTIDVYIEVLQADGSTRVTGITAASLALADAGIPMRDLLVGVSVG 164
Query: 175 SAESGYCILDPTKLEEQKMKG 195
SG I+D +LE+Q +G
Sbjct: 165 KV-SGTIIVDLNQLEDQYGEG 184
>gi|297809689|ref|XP_002872728.1| hypothetical protein ARALYDRAFT_490148 [Arabidopsis lyrata subsp.
lyrata]
gi|297318565|gb|EFH48987.1| hypothetical protein ARALYDRAFT_490148 [Arabidopsis lyrata subsp.
lyrata]
Length = 132
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/88 (53%), Positives = 62/88 (70%), Gaps = 5/88 (5%)
Query: 62 WVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQI----GKPEKEYEIILKRT 117
++ SGDTKVLAA YG KA + + P++ I + +G + K E+EYE ILKRT
Sbjct: 15 FICSGDTKVLAAQYGLKA-SYGSHKPDRLVIVNAFSFSSGGVFCCLRKVEREYETILKRT 73
Query: 118 LQSICILTINPNTTTSVIIQVVHDDGAL 145
LQ+IC+LT+ PNTTTSVIIQVVHD G++
Sbjct: 74 LQNICVLTVVPNTTTSVIIQVVHDGGSV 101
>gi|289742861|gb|ADD20178.1| exosomal 3'-5' exoribonuclease complex subunit Rrp46 [Glossina
morsitans morsitans]
Length = 245
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 113/266 (42%), Gaps = 56/266 (21%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFC 60
M+V+ D +LR L C + L R GS + QG
Sbjct: 8 MQVNE-DAVKNTKLRTLNCELNPLTRTDGSTLFIQGA----------------------- 43
Query: 61 YWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQS 120
T VLA++ GP +N +KA ++ I++P+ G +K E ++K T ++
Sbjct: 44 -------TCVLASMLGPVEVKLQNLKIDKAHVDCIYRPKAGLPTIRDKIRETMIKDTCEA 96
Query: 121 ICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGY 180
+ ++P T S+ +Q + D G L CAINAAC AL+ G+PMK A+ C ++G
Sbjct: 97 ALLSALHPRTLISIQLQELDDRGGLDACAINAACMALLIGGVPMKFTVAAVHCVVDKNGE 156
Query: 181 CILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSV---- 236
+LDP +L+ + VF + +E ++ + G +
Sbjct: 157 IVLDPDQLQAADNRASFTFVF-----------------DSVERDLVAVHSFGCFKINQFK 199
Query: 237 DDYFHCLERGRAASAKLSDFLRRSLQ 262
D + CL AAS+ L DF R +
Sbjct: 200 DAHLICL----AASSTLFDFYREIMH 221
>gi|307594960|ref|YP_003901277.1| exosome complex exonuclease 1 [Vulcanisaeta distributa DSM 14429]
gi|307550161|gb|ADN50226.1| exosome complex exonuclease 1 [Vulcanisaeta distributa DSM 14429]
Length = 246
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 95/201 (47%), Gaps = 41/201 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R+DGR PN+ RP+ ++ A GSA V
Sbjct: 15 RSDGRLPNEHRPVRMEVGVIKNAEGSA------------------------------LVA 44
Query: 65 SGDTKVLAAVYGPKAGTKKN-ENPEKASIEVIW--KPRTGQIGKP-----EKEYEI--IL 114
G+T +LAAVYGP+ +K+ E P+KA + V + P + G+ +E EI ++
Sbjct: 45 YGNTVILAAVYGPREVPQKHLELPDKAILRVRYHMAPFSTSEGRKSPTPSRREIEISKVI 104
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
+ L+ + IL P TT V I+V+ DG+ I AA AL DAGIPM+ L V +
Sbjct: 105 RTALEPVVILERFPRTTIDVYIEVLQADGSTRVTGITAASLALADAGIPMRDLLVGVSIG 164
Query: 175 SAESGYCILDPTKLEEQKMKG 195
SG ++D +LE+Q +G
Sbjct: 165 KV-SGTIVVDLNQLEDQYGEG 184
>gi|348677627|gb|EGZ17444.1| hypothetical protein PHYSODRAFT_499334 [Phytophthora sojae]
Length = 170
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 81/174 (46%), Gaps = 38/174 (21%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR N+LRP A L RA GSA S G
Sbjct: 8 RQDGRAGNELRPFASEQGALFRADGSARMSHG---------------------------- 39
Query: 65 SGDTKVLAAVYGP-KAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICI 123
+ VLA+VYGP +A + E +KA+++V +K G E+EYE I++ T + +
Sbjct: 40 --SSTVLASVYGPGQARNWRAEKTDKATLDVCFKLEKGITTSKEREYEQIIRETFTPVVL 97
Query: 124 LTINPNTTTSVIIQVVHDDGAL-LPC------AINAACAALVDAGIPMKHLAVA 170
P S+++QV+ D+G++ P AINA AL+DAG+PM + A
Sbjct: 98 TDSFPRAVISIVVQVIEDNGSISFPLFSYYAFAINAVSLALMDAGVPMLSVVTA 151
>gi|347967317|ref|XP_308011.5| AGAP002177-PA [Anopheles gambiae str. PEST]
gi|333466351|gb|EAA03766.5| AGAP002177-PA [Anopheles gambiae str. PEST]
Length = 226
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 101/254 (39%), Gaps = 47/254 (18%)
Query: 10 NPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTK 69
N LR + C ++L R+ SA+ SQG T+
Sbjct: 11 NSLNLRRMVCETNVLSRSDCSAALSQG------------------------------ATQ 40
Query: 70 VLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPN 129
V+ A GP KN E +EV ++ GQ + E ++KR+ +
Sbjct: 41 VMVAANGPAEVKFKNAESENCHLEVQYRSNAGQEDIQHRLMESLIKRSFVRVVATPAFCR 100
Query: 130 TTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLE 189
+ + +Q + D G LL C+INA+C AL+ +G+ + A+ C E G ILDP +
Sbjct: 101 SAVYIYVQEMTDRGGLLACSINASCLALITSGVELNFTVAAVHCIMTEDGAMILDPDHKQ 160
Query: 190 EQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAA 249
+ + VF + + +TS HG+ + ++Y + R A
Sbjct: 161 LKLARSSFTFVF-----------------DSIGKNTVTSYVHGSFTFEEYEQVVSVCRKA 203
Query: 250 SAKLSDFLRRSLQS 263
K+ DF R+ Q+
Sbjct: 204 VEKIFDFYRKVSQN 217
>gi|328865596|gb|EGG13982.1| Exosome complex exonuclease rrp41 [Dictyostelium fasciculatum]
Length = 244
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 87/198 (43%), Gaps = 44/198 (22%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR N++R L +L+RA GS+ + QG
Sbjct: 13 RIDGRRSNEIRRLNMRMGVLNRADGSSYYEQG---------------------------- 44
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIW---------KPRTGQIGKPEKEYEIILK 115
+TK+ A+YGP T + ++ASI+ + + + K E ++K
Sbjct: 45 --NTKITVAIYGPHESTTQKSLFDRASIKCEFAMSSFSTSERKVKSRFDKTAYETSTLIK 102
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
+ +S + + P + + +QV+ DG L AINA A++DAGIPM+ +C CS
Sbjct: 103 QAFESTVLTHLFPRSQIDIYVQVLQSDGGLKSAAINAVTLAMIDAGIPMRDY---VCACS 159
Query: 176 AE--SGYCILDPTKLEEQ 191
A G ++D +EE+
Sbjct: 160 ATFIEGSALMDLNHMEER 177
>gi|255085244|ref|XP_002505053.1| predicted protein [Micromonas sp. RCC299]
gi|226520322|gb|ACO66311.1| predicted protein [Micromonas sp. RCC299]
Length = 168
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 73/151 (48%), Gaps = 28/151 (18%)
Query: 14 LRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLAA 73
+R + + L RA GSA W QG H ++ V+AA
Sbjct: 1 MRQMKTERNPLQRAEGSARWEQG---------THRSV-------------------VMAA 32
Query: 74 VYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTS 133
VYGP + E+ +K +IEV W+P G + + E L+RTL+ I + P
Sbjct: 33 VYGPTQTQARKEDVDKLAIEVCWRPPFGLQTPADVDAERALRRTLEQIVLTAKYPRLGLR 92
Query: 134 VIIQVVHDDGALLPCAINAACAALVDAGIPM 164
V++QV+ DGA+ CA+NA C AL+DAG+ M
Sbjct: 93 VVVQVISADGAVEACAMNATCHALMDAGVEM 123
>gi|224001004|ref|XP_002290174.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220973596|gb|EED91926.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335]
Length = 172
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 87/184 (47%), Gaps = 33/184 (17%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R+DGR P+++R ++C L S + TS C V
Sbjct: 9 RSDGRRPHEIRHMSCHLGALPSTTACGSA------------------LPTSACSGSALVS 50
Query: 65 SGDTKVLAAVYGPK-AGTKKNENPEKASIEVIWK------PRTGQIGKPEKEYEII---- 113
G T+VL V GP AG + E P++A++EV + P ++ P + +I
Sbjct: 51 MGLTQVLCVVRGPSDAGRRTEELPDRATLEVTMRTSPFSPPGDRRVTNPTSDRRLIEQSH 110
Query: 114 -LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAIC 172
L+ L + +L + P + SV + V+ DDG L AINAA AL+DAGIP+K + +C
Sbjct: 111 LLQTALSASILLHLYPKSKISVTVMVLADDGGRLEAAINAATLALIDAGIPLKDM---VC 167
Query: 173 CCSA 176
CSA
Sbjct: 168 ACSA 171
>gi|385806380|ref|YP_005842778.1| exosome complex exonuclease 1 [Fervidicoccus fontis Kam940]
gi|383796243|gb|AFH43326.1| exosome complex exonuclease 1 [Fervidicoccus fontis Kam940]
Length = 246
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 87/195 (44%), Gaps = 40/195 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P+QLRP++ IL A GSA V
Sbjct: 16 RVDGRRPDQLRPISMKVGILKNAQGSA------------------------------LVS 45
Query: 65 SGDTKVLAAVYGPKAGTKKNEN-PEKASIEVIW--------KPRTGQIGKPEKEYEIILK 115
G T+V+AAVYGP+ ++ P++A + + + + ++ + E E +++
Sbjct: 46 YGKTQVMAAVYGPREALPRHMTLPDRAILRIRYHMAPFSTSERKSPAPTRREIELSKVIR 105
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
L++ + P TT V I+V+ DG ++ AA AL DAGIPMK L +
Sbjct: 106 EALEATVFSELFPRTTIDVFIEVLQADGGTRTTSLTAASLALADAGIPMKDLIAGVAVGK 165
Query: 176 AESGYCILDPTKLEE 190
+ G +LD ++E+
Sbjct: 166 VD-GVLVLDINEIED 179
>gi|312377314|gb|EFR24174.1| hypothetical protein AND_11431 [Anopheles darlingi]
Length = 269
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 98/246 (39%), Gaps = 47/246 (19%)
Query: 14 LRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLAA 73
LR + C +IL R+ SA+ SQG T+V+ +
Sbjct: 7 LRRMICETNILSRSDCSAALSQG------------------------------ATQVMVS 36
Query: 74 VYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTS 133
GP +N E A +EV ++ G + E ++KR+ + T P +
Sbjct: 37 ANGPAEVKLRNAESENAHLEVQYRSNAGLEDIQNRLVESLIKRSFVRVVASTAFPRSAVY 96
Query: 134 VIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKM 193
V +Q + D G LL C INA C AL+ GI + A+ C E G ILDP + ++M
Sbjct: 97 VFVQEMTDKGGLLACCINATCLALITGGIELNFTVAAVHCIIDEDGNMILDP---DSKQM 153
Query: 194 KGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKL 253
K L S + + +TS +G+ + D+Y + A K+
Sbjct: 154 K--------------LARSSFTFVYDSIAKNTVTSYVYGSFTFDEYERVASVCKEAVDKI 199
Query: 254 SDFLRR 259
+F R+
Sbjct: 200 FNFYRK 205
>gi|218884635|ref|YP_002429017.1| putative exosome complex exonuclease 1 [Desulfurococcus
kamchatkensis 1221n]
gi|218766251|gb|ACL11650.1| Probable exosome complex exonuclease 1 [Desulfurococcus
kamchatkensis 1221n]
Length = 242
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 89/196 (45%), Gaps = 40/196 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P +LRP+ + +L A+GSA V
Sbjct: 13 RIDGRKPEELRPVRIALGVLKNANGSA------------------------------LVE 42
Query: 65 SGDTKVLAAVYGPKAGTKKNEN-PEKASIEVIW--------KPRTGQIGKPEKEYEIILK 115
G+TK LAAVYGP+ K+ + P++A + V + + ++ + E E +++
Sbjct: 43 YGNTKALAAVYGPREALPKHISLPDRAILRVRYHMAPFSTTERKSPAPSRREIELSKVIR 102
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
L+S+ + P + V I+++ DG + AA AL DAGIPM+ L + +
Sbjct: 103 EALESVVFTSQFPRASIDVFIEILQADGGTRTTGLTAASLALADAGIPMRDLVIGVAVGK 162
Query: 176 AESGYCILDPTKLEEQ 191
+ G +LD +LE++
Sbjct: 163 VD-GVLVLDINELEDE 177
>gi|391326561|ref|XP_003737781.1| PREDICTED: exosome complex component RRP41-like [Metaseiulus
occidentalis]
Length = 247
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 100/235 (42%), Gaps = 47/235 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR ++R L CS + +A GSA +V
Sbjct: 13 RVDGRRAQEMRKLDCSLGVFAQADGSA------------------------------YVK 42
Query: 65 SGDTKVLAAVYGP---KAGTKK--------NENPEKASIEVIWKPRTGQIGKPEKEYEII 113
G+T VLAAVYGP + G K N A+ + R + E +
Sbjct: 43 EGNTVVLAAVYGPHEVRGGRVKALHDRAVVNCQFSAATFSTAERKRRPRGDTKSVEMTLH 102
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
L++T ++ + + P + ++V+ DG++L AINAA ALVDAGI ++ +C
Sbjct: 103 LQQTFETAILTKLYPRCQIDIFVEVLQADGSILSVAINAATMALVDAGIGLRDY---VCA 159
Query: 174 CSAE--SGYCILDPTKLEE-QKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGI 225
CSA + +LD LEE QK G + P + VL + SS + + + I
Sbjct: 160 CSAGVFNDAALLDLNNLEESQKGTGLTVAILPKTERIVLVDMSSKIHSDHVSKTI 214
>gi|390939121|ref|YP_006402859.1| exosome complex exonuclease 1 [Desulfurococcus fermentans DSM
16532]
gi|390192228|gb|AFL67284.1| exosome complex exonuclease 1 [Desulfurococcus fermentans DSM
16532]
Length = 242
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 89/196 (45%), Gaps = 40/196 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P +LRP+ + +L A+GSA V
Sbjct: 13 RIDGRKPEELRPVRIALGVLKNANGSA------------------------------LVE 42
Query: 65 SGDTKVLAAVYGPKAGTKKNEN-PEKASIEVIW--------KPRTGQIGKPEKEYEIILK 115
G+TK LAAVYGP+ K+ + P++A + V + + ++ + E E +++
Sbjct: 43 YGNTKALAAVYGPREALPKHISLPDRAILRVRYHMAPFSTTERKSPAPSRREIELSKVIR 102
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
L+S+ + P + V I+++ DG + AA AL DAGIPM+ L + +
Sbjct: 103 EALESVVFTSQFPRASIDVFIEILQADGGTRTTGLTAASLALADAGIPMRDLVIGVAVGK 162
Query: 176 AESGYCILDPTKLEEQ 191
+ G +LD +LE++
Sbjct: 163 VD-GVLVLDINELEDK 177
>gi|195443592|ref|XP_002069486.1| GK11547 [Drosophila willistoni]
gi|194165571|gb|EDW80472.1| GK11547 [Drosophila willistoni]
Length = 237
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 97/216 (44%), Gaps = 34/216 (15%)
Query: 2 EVDRADGRNPN-QLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFC 60
E+ G+ PN +LR + C + L R GS +SQG
Sbjct: 3 EIATDKGKVPNDKLREMRCEFNPLSRCDGSVMYSQG------------------------ 38
Query: 61 YWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQS 120
T V+AAV GP ++ + + + +E ++P+ G E+ E +++ L+
Sbjct: 39 ------STVVIAAVLGPVEVKTQSLSIDGSYLECNYRPKAGLPQVKERIRESVIQDVLEL 92
Query: 121 ICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGY 180
+ P + SV IQ + D G++ CA+NAAC A++ G+PMK+ A+ C E G
Sbjct: 93 AVLGESYPRSKMSVQIQELEDRGSIDACAVNAACLAMIIGGLPMKYSFAAVQCIINEDGE 152
Query: 181 CILDPTKLEEQKMKG---FAYLVFPNSILSVLPEGS 213
ILDP + E + FA+ +L V +GS
Sbjct: 153 YILDPDQRETLHQRASFTFAFDSLEGDLLLVQTKGS 188
>gi|398412181|ref|XP_003857419.1| hypothetical protein MYCGRDRAFT_30576, partial [Zymoseptoria
tritici IPO323]
gi|339477304|gb|EGP92395.1| hypothetical protein MYCGRDRAFT_30576 [Zymoseptoria tritici IPO323]
Length = 202
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 78/154 (50%), Gaps = 10/154 (6%)
Query: 70 VLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPN 129
V+A V GP +++E PE+A+IEV +P +G G E+ E +L L+S+ ++ ++P
Sbjct: 17 VVAGVNGPVEVQRRDELPEEAAIEVNLRPISGVGGPRERWLETVLHAVLKSVLLVNMHPR 76
Query: 130 TTTSVIIQVVHD----------DGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESG 179
T + +QV H+ D +++P +NAA AALVD G+P+ A E G
Sbjct: 77 TLIQITLQVTHEPILKWQRTATDISIIPTLLNAAFAALVDGGLPLAATTAAALAIIREDG 136
Query: 180 YCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGS 213
I+DP + + K + F +L E S
Sbjct: 137 EVIIDPQEKQMSSYKSIHAMAFDQHGSQLLDESS 170
>gi|116754659|ref|YP_843777.1| exosome complex exonuclease Rrp41 [Methanosaeta thermophila PT]
gi|116666110|gb|ABK15137.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanosaeta
thermophila PT]
Length = 245
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/272 (25%), Positives = 108/272 (39%), Gaps = 70/272 (25%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR ++LRP+ +L RA GS CY
Sbjct: 12 RLDGRRFDELRPIKMEVGVLKRADGS--------------------------CYMEM--- 42
Query: 65 SGDTKVLAAVYGPK------------AGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEI 112
GD KV+AAVYGP+ A + N S+E +P G + YE+
Sbjct: 43 -GDNKVIAAVYGPREVHPRHLQEVNRAIIRYRYNMASFSVEERRRP-----GPDRRSYEL 96
Query: 113 --ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVA 170
+ + L+ + + + P + + ++V+ D INAA AL DAGIPM+ L V+
Sbjct: 97 SKVSREALEPVILTSYFPKSVIDIFVEVLQADAGTRTAGINAASVALADAGIPMRSL-VS 155
Query: 171 ICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGS-SLVQGEPMEHGIITSV 229
C G +LDP K E+ F P +++ P G +L+Q
Sbjct: 156 SCAAGKVDGQIVLDPMKDED----NFGQADMP---IAITPTGEITLLQ------------ 196
Query: 230 THGAMSVDDYFHCLERGRAASAKLSDFLRRSL 261
G ++ D++ +E + ++ RR L
Sbjct: 197 MDGILTRDEFRQAMELAKKGCQEIYKIQRRVL 228
>gi|126465758|ref|YP_001040867.1| ribosomal RNA-processing protein RRP41/SKI6 [Staphylothermus
marinus F1]
gi|126014581|gb|ABN69959.1| ribosomal RNA-processing protein RRP41/SKI6 [Staphylothermus
marinus F1]
Length = 240
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 86/196 (43%), Gaps = 40/196 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR PN+LRP+ +L A GSA +V
Sbjct: 13 RHDGRKPNELRPIKMDVGVLKNADGSA------------------------------YVE 42
Query: 65 SGDTKVLAAVYGPKAGTKKN-ENPEKASIEVIW--------KPRTGQIGKPEKEYEIILK 115
G TKV+AAVYGP+ ++ P++A I + ++ + E E +++
Sbjct: 43 YGGTKVIAAVYGPREVYPRHLALPDRALIRCRYHMAPFSTSDRKSPAPSRREIELSKVIR 102
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
L+S+ + P TT V I+V+ DG + AA AL DAGIPM+ L +
Sbjct: 103 EALESLVFSELYPRTTIDVFIEVLQADGGTRTTGLTAASLALADAGIPMRDLVAGVAVGK 162
Query: 176 AESGYCILDPTKLEEQ 191
+ G +LD ++E++
Sbjct: 163 VD-GVLVLDIDEVEDE 177
>gi|328769717|gb|EGF79760.1| hypothetical protein BATDEDRAFT_19845 [Batrachochytrium
dendrobatidis JAM81]
Length = 253
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 89/196 (45%), Gaps = 41/196 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P +LR L + A GSA ++
Sbjct: 25 RVDGRRPPELRRLLTKVGLFTNADGSA------------------------------YIE 54
Query: 65 SGDTKVLAAVYGPK-AGTKKNENPEKASIEVIWK-------PRTGQIGKPEKEYEI--IL 114
G+TK +AAVYGPK + + + ++A I V + R ++ + ++ EI I+
Sbjct: 55 LGNTKCVAAVYGPKESKIQSAQLHDRAVINVEYNVASFSSGERKLKMKRDKRMLEIASII 114
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
KRT + + + + P + + +Q++ DG L AINA C A++DAGIPM +A C
Sbjct: 115 KRTFEPVVMTSTFPRSEIDIYVQILQLDGGALHAAINATCLAMIDAGIPMSDYVIA-CSA 173
Query: 175 SAESGYCILDPTKLEE 190
+G +LD +EE
Sbjct: 174 GFSNGSALLDLNYIEE 189
>gi|452989450|gb|EME89205.1| hypothetical protein MYCFIDRAFT_111815, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 199
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 73/130 (56%), Gaps = 10/130 (7%)
Query: 70 VLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPN 129
++A V GP +++E PE+A+IEV ++P +G G E+ E I+++ L+SI ++ ++P
Sbjct: 27 IIAGVNGPVEVQRRDELPEEAAIEVNFRPSSGVGGPRERWLEGIMQKVLRSILLVHLHPR 86
Query: 130 TTTSVIIQVVHD----------DGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESG 179
T +QV + D A+LP INA+ A +D G+P+ A+ +SG
Sbjct: 87 TLFQFTVQVSNQPQTQFRKTTGDIAILPALINASLTAAIDGGVPLATTTSAVLAVVTDSG 146
Query: 180 YCILDPTKLE 189
++DP++ E
Sbjct: 147 KVVVDPSEKE 156
>gi|429216660|ref|YP_007174650.1| archaeal exosome-like complex exonuclease 1 [Caldisphaera
lagunensis DSM 15908]
gi|429133189|gb|AFZ70201.1| archaeal exosome-like complex exonuclease 1 [Caldisphaera
lagunensis DSM 15908]
Length = 243
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 83/194 (42%), Gaps = 39/194 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P+++RP+ +L A GSA G
Sbjct: 17 RLDGRKPDEVRPIKMQVGVLTNADGSALVEYGL--------------------------- 49
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIW--------KPRTGQIGKPEKEYEIILKR 116
T+VLAAVYGPK K P++A++ V + + + + E E +L+
Sbjct: 50 ---TRVLAAVYGPKESQKSMLLPDRATLRVRYHMAPFSTEERKNPAPTRRELELSKVLRE 106
Query: 117 TLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSA 176
+L+ + I P T+ V I+V+ DG AA AL DAGIPM+ L +
Sbjct: 107 SLEPVVITEYFPRTSIDVFIEVLQSDGGTRTVGATAASLALADAGIPMRALVAGVAIGKV 166
Query: 177 ESGYCILDPTKLEE 190
++ I+D ++E+
Sbjct: 167 DN-VLIVDLNEVED 179
>gi|296243060|ref|YP_003650547.1| ribosomal RNA-processing protein RRP41/SKI6 [Thermosphaera
aggregans DSM 11486]
gi|296095644|gb|ADG91595.1| ribosomal RNA-processing protein RRP41/SKI6 [Thermosphaera
aggregans DSM 11486]
Length = 249
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 89/196 (45%), Gaps = 40/196 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR ++LRP+ +L A+GSA V
Sbjct: 20 RLDGRRLDELRPVKIKVGVLKNANGSA------------------------------LVE 49
Query: 65 SGDTKVLAAVYGPKAGTKKN-ENPEKASIEVIW--------KPRTGQIGKPEKEYEIILK 115
G TKVLAAV+GP+ ++ P++A++ V + + ++ + E E +++
Sbjct: 50 YGGTKVLAAVFGPREALPRHIALPDRATLRVRYHMAPFSTSERKSPAPSRREIELSKVIR 109
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
L+S+ P T+ + I+V+ DG + AA AL DAGIPMK L + +
Sbjct: 110 EALESVVFSEQFPRTSIDIFIEVLQADGGTRTAGLTAASVALADAGIPMKDLVIGVAVGK 169
Query: 176 AESGYCILDPTKLEEQ 191
E G +LD ++LE++
Sbjct: 170 IE-GNLVLDISELEDE 184
>gi|167517347|ref|XP_001743014.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778113|gb|EDQ91728.1| predicted protein [Monosiga brevicollis MX1]
Length = 256
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 98/223 (43%), Gaps = 38/223 (17%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR PNQLR L+C ++ A GSA FR QT C V
Sbjct: 12 REDGRAPNQLRELSCDFAVNSAADGSAR----FRLGQT-----------------CVEV- 49
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICIL 124
+V+G + ++E P++++IEV ++ GQ + E L+ + +
Sbjct: 50 --------SVFGFRGVPVRSELPDRSAIEVSFRGVGGQRKVTDAAAENFLRECVDCALQV 101
Query: 125 TINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILD 184
P + +V VV DDG +L +A C AL+DAG+PM ++ V + G +LD
Sbjct: 102 HEQPRSQCAVAAHVVQDDGGVLAALASATCLALLDAGLPMTNVFVGVSSAFDAKGGFLLD 161
Query: 185 PTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIIT 227
P+ E Q +LS EG ++ E +HG +T
Sbjct: 162 PSATEAQASANATV------VLSCGAEGGRVLACE--QHGPLT 196
>gi|242022707|ref|XP_002431780.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212517105|gb|EEB19042.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 191
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 65/105 (61%)
Query: 66 GDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILT 125
GDT L+AVYGP + E A++EV++K + G +K E+ L ++ + +
Sbjct: 28 GDTMTLSAVYGPAEVRPQKLLTENATVEVLFKSKNGVPSISDKIKEVSLNNICKTAILSS 87
Query: 126 INPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVA 170
+P T+ S+I+Q + D G LL C++N+AC AL++AGIP+K++ A
Sbjct: 88 QHPRTSISIIVQEMQDYGGLLACSVNSACLALLNAGIPLKYVFAA 132
>gi|254168259|ref|ZP_04875105.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469]
gi|197622768|gb|EDY35337.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469]
Length = 243
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 101/253 (39%), Gaps = 52/253 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR PNQLRP+ +L RA GSA F W
Sbjct: 14 RIDGRLPNQLRPIKMEVGVLKRADGSA---------------------------FIEW-- 44
Query: 65 SGDTKVLAAVYGP-KAGTKKNENPEKASIEVIW---------KPRTGQIGKPEK---EYE 111
G K++AAVYGP +A K + ++A + + + R G P++ E
Sbjct: 45 -GGNKIIAAVYGPHEAYPKHVQEADRAIVRARYSMAPFSVDERKRPG----PDRRAIELS 99
Query: 112 IILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAI 171
++ L+S+ + P T+ V I+V+ D I A AL DAGIPM+ L V
Sbjct: 100 KVISEALESVIFVEKYPRTSIDVYIEVLQADAGTRVAGITVASLALADAGIPMRDLIVG- 158
Query: 172 CCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTH 231
C +LD K E+ F P +I+ E + L M + +T+
Sbjct: 159 CAAGKIDDVVVLDLNKEEDN----FGQADVPMAIMPRTKEIALLQMDGDMSYEELTTAMD 214
Query: 232 GAMSVDDYFHCLE 244
AM + H ++
Sbjct: 215 MAMDAAEKIHEMQ 227
>gi|289595860|ref|YP_003482556.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469]
gi|289533647|gb|ADD07994.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469]
Length = 245
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 101/253 (39%), Gaps = 52/253 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR PNQLRP+ +L RA GSA F W
Sbjct: 16 RIDGRLPNQLRPIKMEVGVLKRADGSA---------------------------FIEW-- 46
Query: 65 SGDTKVLAAVYGP-KAGTKKNENPEKASIEVIW---------KPRTGQIGKPEK---EYE 111
G K++AAVYGP +A K + ++A + + + R G P++ E
Sbjct: 47 -GGNKIIAAVYGPHEAYPKHVQEADRAIVRARYSMAPFSVDERKRPG----PDRRAIELS 101
Query: 112 IILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAI 171
++ L+S+ + P T+ V I+V+ D I A AL DAGIPM+ L V
Sbjct: 102 KVISEALESVIFVEKYPRTSIDVYIEVLQADAGTRVAGITVASLALADAGIPMRDLIVG- 160
Query: 172 CCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTH 231
C +LD K E+ F P +I+ E + L M + +T+
Sbjct: 161 CAAGKIDDVVVLDLNKEEDN----FGQADVPMAIMPRTKEIALLQMDGDMSYEELTTAMD 216
Query: 232 GAMSVDDYFHCLE 244
AM + H ++
Sbjct: 217 MAMDAAEKIHEMQ 229
>gi|284161628|ref|YP_003400251.1| exosome complex exonuclease 1 [Archaeoglobus profundus DSM 5631]
gi|284011625|gb|ADB57578.1| exosome complex exonuclease 1 [Archaeoglobus profundus DSM 5631]
Length = 244
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 97/223 (43%), Gaps = 57/223 (25%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR+ +LRP+ +L+RA GS CY
Sbjct: 12 RLDGRDFEELRPIKIEAGVLNRADGS--------------------------CYLEM--- 42
Query: 65 SGDTKVLAAVYGPKAGTKKN-ENPEKA-----------SIEVIWKP----RTGQIGKPEK 108
G KV+AAVYGP+ K+ E+P KA S+E +P R+ +I K +
Sbjct: 43 -GGNKVVAAVYGPREVHPKHLEDPSKAIIRYRYSMAPFSVEERKRPGPDRRSIEISKVSR 101
Query: 109 EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLA 168
E L+ + + + P + + ++V+ D +NAA AL+DAGIPMK +
Sbjct: 102 E-------ALEPVIMKELFPRSAIDIFVEVLQADAGSRTACLNAASVALIDAGIPMKGMV 154
Query: 169 VAICCCSAESGYCILDPTKLEEQKMKG---FAYLVFPNSILSV 208
++ + G +LDP K E+ + FA+L+ I S+
Sbjct: 155 TSVAVAKVD-GILVLDPMKEEDNYGEADIPFAFLIRNGKIESI 196
>gi|297527572|ref|YP_003669596.1| exosome complex exonuclease 1 [Staphylothermus hellenicus DSM
12710]
gi|297256488|gb|ADI32697.1| exosome complex exonuclease 1 [Staphylothermus hellenicus DSM
12710]
Length = 240
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 86/196 (43%), Gaps = 40/196 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P++LRP+ +L A GSA +V
Sbjct: 13 RHDGRRPDELRPIKMDVGVLKNADGSA------------------------------YVE 42
Query: 65 SGDTKVLAAVYGPKAGTKKN-ENPEKASIEVIW--------KPRTGQIGKPEKEYEIILK 115
G TK++AAVYGP+ ++ P++A I + ++ + E E +++
Sbjct: 43 YGGTKIIAAVYGPREVYPRHLALPDRALIRCRYHMAPFSTSDRKSPAPSRREIELSKVIR 102
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
L+S+ + P TT V I+V+ DG + AA AL DAGIPM+ L +
Sbjct: 103 EALESLVFSELYPRTTIDVFIEVLQADGGTRTTGLTAASLALADAGIPMRDLVAGVAAGK 162
Query: 176 AESGYCILDPTKLEEQ 191
+ G +LD ++E++
Sbjct: 163 VD-GVLVLDIDEVEDE 177
>gi|290989317|ref|XP_002677284.1| predicted protein [Naegleria gruberi]
gi|284090891|gb|EFC44540.1| predicted protein [Naegleria gruberi]
Length = 248
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 90/196 (45%), Gaps = 41/196 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +++R + ++ RA GSA + QG
Sbjct: 14 RVDGRRSHEIRNIKFKLNLFSRADGSAYYEQG---------------------------- 45
Query: 65 SGDTKVLAAVYGPKAGTKKNE-NPEKASIEVIWKPRTGQIGKPEKEYE---------IIL 114
+T+VLAAVYGP+ K++ ++A I + T G+ +++++ +++
Sbjct: 46 --NTRVLAAVYGPREVKNKSQMKNDRAIINCEYSMATFSTGERKRQFKKDRRSTEISVVI 103
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
++T +S+ + + P T + +QV+ DG INAA AL+DAGIPMK V+ C
Sbjct: 104 RQTFESVILTHLYPRTQIDIFMQVLQADGGTRCACINAATLALLDAGIPMKDFVVS-CAA 162
Query: 175 SAESGYCILDPTKLEE 190
G + D +E+
Sbjct: 163 GFIQGSPLTDLNYIED 178
>gi|312375907|gb|EFR23155.1| hypothetical protein AND_13423 [Anopheles darlingi]
Length = 246
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 83/195 (42%), Gaps = 39/195 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR N+LR + C + + GSA +V
Sbjct: 10 RLDGRRANELRHIQCKLGVFSQPDGSA------------------------------YVE 39
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEK---------EYEIILK 115
G+TKVLAAVYGP + K N E+A + + T G+ +K E I LK
Sbjct: 40 QGNTKVLAAVYGPHQASSKKSNHEEAIVNCQYSMATFSTGERKKRPRGDRKSQEMTIHLK 99
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
+ L + + + P + V I+V+ DG ++NAA AL+DAGI +K A
Sbjct: 100 QALSAAIKMELYPRSQIDVYIEVLQADGGNYCASVNAATLALIDAGICLKEYVCACTASL 159
Query: 176 AESGYCILDPTKLEE 190
A ++D + LEE
Sbjct: 160 ANGNVPLMDVSHLEE 174
>gi|11498104|ref|NP_069329.1| exosome complex exonuclease Rrp41 [Archaeoglobus fulgidus DSM 4304]
gi|29336576|sp|O29757.1|ECX1_ARCFU RecName: Full=Probable exosome complex exonuclease 1
gi|83754325|pdb|2BA0|F Chain F, Archaeal Exosome Core
gi|83754326|pdb|2BA0|E Chain E, Archaeal Exosome Core
gi|83754327|pdb|2BA0|D Chain D, Archaeal Exosome Core
gi|83754334|pdb|2BA1|D Chain D, Archaeal Exosome Core
gi|83754335|pdb|2BA1|E Chain E, Archaeal Exosome Core
gi|83754336|pdb|2BA1|F Chain F, Archaeal Exosome Core
gi|2650133|gb|AAB90744.1| ribonuclease PH (rph) [Archaeoglobus fulgidus DSM 4304]
Length = 258
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 114/269 (42%), Gaps = 60/269 (22%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR ++LRP+ S+L RA GS CY
Sbjct: 17 RLDGRKFDELRPIKIEASVLKRADGS--------------------------CYLEM--- 47
Query: 65 SGDTKVLAAVYGPKAGTKKN-ENPEKASIEVIWK------PRTGQIGKPEKEYEI--ILK 115
G KV+AAV+GP+ ++ ++P KA I + + G + EI + K
Sbjct: 48 -GKNKVIAAVFGPREVHPRHLQDPSKAIIRYRYNMAPFSVEERKRPGPDRRSIEISKVSK 106
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
+++ + + P + + ++V+ D +NAA ALVDAG+PMK + ++
Sbjct: 107 EAFEAVIMKELFPRSAIDIFVEVLQADAGSRTACLNAASVALVDAGVPMKGMITSVAVGK 166
Query: 176 AESGYCILDPTKLEEQKMKG---FAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHG 232
A+ G +LDP K E+ + FA+L+ I S+ +L+Q G
Sbjct: 167 AD-GQLVLDPMKEEDNFGEADMPFAFLIRNGKIESI-----ALLQ------------MDG 208
Query: 233 AMSVDDYFHCLERGRAASAKLSDFLRRSL 261
M+ D+ +E + + ++ + R ++
Sbjct: 209 RMTRDEVKQAIELAKKGALQIYEMQREAI 237
>gi|291233253|ref|XP_002736568.1| PREDICTED: exosome component 4-like [Saccoglossus kowalevskii]
Length = 246
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 95/223 (42%), Gaps = 49/223 (21%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
RADGR P++LR + C + +A GSA ++
Sbjct: 13 RADGRRPHELRKIRCRMGVFRQADGSA------------------------------YIE 42
Query: 65 SGDTKVLAAVYGPK--AGTKKNENPEKASIEVIWKPRTGQIG---------KPEKEYEII 113
G+TKVLA VYGP G + +K + + T G + +E +
Sbjct: 43 QGNTKVLATVYGPHEITGGRSKALHDKVLLNCQYSMATFSTGERKTRPKGDRRSQEMSMN 102
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
L+RT Q+ + + P + + +QV+ DG +NAA A++DAGIPM+ A C
Sbjct: 103 LRRTFQAAILTHLYPRSQIDIYVQVLQSDGGNYCACVNAATLAVIDAGIPMRDYVCA-CT 161
Query: 174 CSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLV 216
S ++D + LEE + P ++++LP+ +V
Sbjct: 162 SSLLEDTPVVDISYLEES-------VGSPEMVVALLPKSEQIV 197
>gi|195037132|ref|XP_001990019.1| GH18468 [Drosophila grimshawi]
gi|193894215|gb|EDV93081.1| GH18468 [Drosophila grimshawi]
Length = 235
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 110/255 (43%), Gaps = 57/255 (22%)
Query: 12 NQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVL 71
++LR + C + L R+ GS +SQG T V+
Sbjct: 12 DKLREMQCKFNPLSRSDGSVMYSQG------------------------------ATVVI 41
Query: 72 AAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTT 131
AAV GP +N + E + +E ++P+ G E+ E ++ L+ + P +
Sbjct: 42 AAVLGPIEVKTQNLSIEGSYLECNYRPKAGLPQVKERIREAAIRDVLELALLSEAYPRSK 101
Query: 132 TSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDP---TKL 188
S+ +Q + D G+ CA+N+AC AL+ G+P+K+ A+ C E G +LDP L
Sbjct: 102 MSLQVQELEDRGSTDACALNSACLALLIGGLPLKYSFAAVHCIINEQGEFVLDPELNETL 161
Query: 189 EEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDY--FHCLERG 246
+Q FA+ ++L LVQ T GA + + C+
Sbjct: 162 RQQASFTFAFDSVDGNLL--------LVQ------------TKGAFKIAQFNDIECI--C 199
Query: 247 RAASAKLSDFLRRSL 261
RAASA++ DF R +L
Sbjct: 200 RAASAQIFDFYRSNL 214
>gi|241119397|ref|XP_002402568.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp41, putative
[Ixodes scapularis]
gi|215493342|gb|EEC02983.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp41, putative
[Ixodes scapularis]
Length = 246
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 98/232 (42%), Gaps = 47/232 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR PN+ R + C + +A GSA ++
Sbjct: 13 RLDGRKPNEQRKIDCRLGVFSQADGSA------------------------------YIE 42
Query: 65 SGDTKVLAAVYGPKA--GTKKNENPEK---------ASIEVIWKPRTGQIGKPEKEYEII 113
G+ KVLAAVYGP G + ++ A+ + R + K +E +
Sbjct: 43 QGNAKVLAAVYGPHEPRGNRSRALHDRVLVNCQFSMATFSTFERKRRPRGDKKSQEMTLH 102
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
+++T ++ + + P + + ++V+ DG L +NAA AL+DAGI +K +C
Sbjct: 103 IQQTFEATILTQLYPRSQIDIFVEVLQSDGGTLSVCVNAATLALIDAGIALKDY---VCA 159
Query: 174 CSAE--SGYCILDPTKLEE-QKMKGFAYLVFPNSILSVLPEGSSLVQGEPME 222
CS G ++D + +EE + V P S VL E SS V + +E
Sbjct: 160 CSVGFIDGVPLVDISSIEESNRGPELTVAVLPKSQQIVLLEMSSRVHVDNLE 211
>gi|295322007|pdb|3M7N|D Chain D, Archaeoglobus Fulgidus Exosome With Rna Bound To The
Active Site
gi|295322008|pdb|3M7N|E Chain E, Archaeoglobus Fulgidus Exosome With Rna Bound To The
Active Site
gi|295322009|pdb|3M7N|F Chain F, Archaeoglobus Fulgidus Exosome With Rna Bound To The
Active Site
gi|295322019|pdb|3M85|D Chain D, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The
Active Site
gi|295322020|pdb|3M85|E Chain E, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The
Active Site
gi|295322021|pdb|3M85|F Chain F, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The
Active Site
Length = 258
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 114/269 (42%), Gaps = 60/269 (22%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR ++LRP+ S+L RA GS CY
Sbjct: 17 RLDGRKFDELRPIKIEASVLKRADGS--------------------------CYLEM--- 47
Query: 65 SGDTKVLAAVYGPKAGTKKN-ENPEKASIEVIWK------PRTGQIGKPEKEYEI--ILK 115
G KV+AAV+GP+ ++ ++P KA I + + G + EI + K
Sbjct: 48 -GKNKVIAAVFGPREVHPEHLQDPSKAIIRYRYNMAPFSVEERKRPGPDRRSIEISKVSK 106
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
+++ + + P + + ++V+ D +NAA ALVDAG+PMK + ++
Sbjct: 107 EAFEAVIMKELFPRSAIDIFVEVLQADAGSRTACLNAASVALVDAGVPMKGMITSVAVGK 166
Query: 176 AESGYCILDPTKLEEQKMKG---FAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHG 232
A+ G +LDP K E+ + FA+L+ I S+ +L+Q G
Sbjct: 167 AD-GQLVLDPMKEEDNFGEADMPFAFLIRNGKIESI-----ALLQ------------MDG 208
Query: 233 AMSVDDYFHCLERGRAASAKLSDFLRRSL 261
M+ D+ +E + + ++ + R ++
Sbjct: 209 RMTRDEVKQAIELAKKGALQIYEMQREAI 237
>gi|288930697|ref|YP_003434757.1| exosome complex exonuclease 1 [Ferroglobus placidus DSM 10642]
gi|288892945|gb|ADC64482.1| exosome complex exonuclease 1 [Ferroglobus placidus DSM 10642]
Length = 245
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 96/223 (43%), Gaps = 57/223 (25%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P++LRP+ +L A GS CY
Sbjct: 13 RIDGRLPDELRPIKIEAGVLKNADGS--------------------------CYLEM--- 43
Query: 65 SGDTKVLAAVYGPKAGTKKN-ENPEKA-----------SIEVIWKP----RTGQIGKPEK 108
G KV+AAVYGP+ K+ +P +A S+E +P R+ +I K +
Sbjct: 44 -GKNKVMAAVYGPRKVQPKHLADPTQAIVRYRYNMAPFSVEERKRPGPDRRSVEISKVSR 102
Query: 109 EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLA 168
E L+SI + + P ++ + ++V+ D +NAA ALVDAGIPMK +
Sbjct: 103 E-------ALESIIMKELFPRSSIDIFVEVLQADAGSRTACLNAASVALVDAGIPMKGII 155
Query: 169 VAICCCSAESGYCILDPTKLEEQKMKG---FAYLVFPNSILSV 208
++ + G +LDP K E+ + FA+ + I S+
Sbjct: 156 TSVAVAKVD-GVLVLDPMKEEDNYGEADIPFAFFIRNGKIESI 197
>gi|209877631|ref|XP_002140257.1| 3' exoribonuclease family protein [Cryptosporidium muris RN66]
gi|209555863|gb|EEA05908.1| 3' exoribonuclease family protein, putative [Cryptosporidium muris
RN66]
Length = 239
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 73/282 (25%), Positives = 114/282 (40%), Gaps = 59/282 (20%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFC 60
ME+ R DGR +LRP+ + H GS+ +S G
Sbjct: 1 MEI-RLDGRQYLELRPINIRIGVFHGLSGSSDFSMGL----------------------- 36
Query: 61 YWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQS 120
++ A + P+ + N K+ ++VI +P +G G EK E+ R L+
Sbjct: 37 -------SRATAVAWQPE---ETNNIRGKSYLDVIIRPNSGSTGDTEKLLELYCTRVLED 86
Query: 121 ICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSA---- 176
I P SV IQV+ DG + P NAA AL+DAGIPM +AI A
Sbjct: 87 IIDFKQIPRCIVSVAIQVISQDGPIFPICFNAAVLALLDAGIPMTTTPLAISIAEACTYQ 146
Query: 177 ---ESGYCILDPTKLEEQKMKGFAYLVF---PNSILSVLPEGSSLVQGEPMEHGIITSVT 230
S + I+DP E K ++ + N I++ L + +G T +T
Sbjct: 147 LNDLSKHIIIDPNGEEIDKCISCSHYIVSSRSNQIIACL-----IAKG--------TGIT 193
Query: 231 HGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGDLSKA 272
+ D F + A + L +++R LQ L ++ K+
Sbjct: 194 YNDKIYD--FDSISIAIAGTKVLCNYIRNYLQKTLLDNVGKS 233
>gi|321465387|gb|EFX76389.1| hypothetical protein DAPPUDRAFT_213979 [Daphnia pulex]
Length = 246
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 92/223 (41%), Gaps = 49/223 (21%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR PN+LR + CS I +A GSA QG
Sbjct: 13 RIDGRKPNELRRIRCSLGIFSQADGSAYLEQG---------------------------- 44
Query: 65 SGDTKVLAAVYGPKA--GTKKNENPEKASIEVIWKPRTGQIGKPEK---------EYEII 113
+TKVLAAVYGP G+K +KA + + T +G+ ++ E
Sbjct: 45 --NTKVLAAVYGPHEIRGSKSKALHDKAFVNCQYSTATFSMGERKRRPRGDRKSTEMSTH 102
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
L+ T + + P + + ++V+ DG +NAA ALVDAG+P+K V+ C
Sbjct: 103 LEETFAAAIRTELYPRSQIDIFVEVLQADGGNYTACVNAAMMALVDAGVPLKDTVVS-CT 161
Query: 174 CSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLV 216
S ++D +E P ++S+LP +V
Sbjct: 162 ASLVKDVPLVDVNHVERSGGS-------PELVVSILPHSGEIV 197
>gi|327400938|ref|YP_004341777.1| exosome complex exonuclease 1 [Archaeoglobus veneficus SNP6]
gi|327316446|gb|AEA47062.1| exosome complex exonuclease 1 [Archaeoglobus veneficus SNP6]
Length = 246
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/279 (24%), Positives = 117/279 (41%), Gaps = 74/279 (26%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR+ ++LRP+ +L RA GS CY +
Sbjct: 14 RLDGRDFDELRPIKIEAGVLRRADGS--------------------------CY----IE 43
Query: 65 SGDTKVLAAVYGPKAGTKKN-ENPEKA-----------SIEVIWKP----RTGQIGKPEK 108
G K++AAVYGP+ ++ ++P +A S+E KP R+ +I K +
Sbjct: 44 MGKNKIVAAVYGPREVHPRHLQDPSRAIIRYRYNMAPFSVEERKKPGPDRRSIEISKVSR 103
Query: 109 EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLA 168
E L+ + + + P + + ++V+ D +NAA AL+DAG+ M+ +
Sbjct: 104 E-------ALEPVILKELFPRSGIDIFVEVLQADAGTRTACLNAASVALIDAGVAMRGMI 156
Query: 169 VAICCCSAESGYCILDPTKLEEQKMKG---FAYLVFPNSILSVLPEGSSLVQGEPMEHGI 225
A+ E G +LDP K E+ + FA+L+ I S+ +L+Q
Sbjct: 157 TAVAVAKVE-GEIVLDPMKEEDNYGEADVPFAFLIRNGKIESI-----ALLQ-------- 202
Query: 226 ITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSK 264
G MS ++ LE + + ++ + R ++ K
Sbjct: 203 ----MDGKMSAEEMKKALELAKKGAMQIYNIQREAIMRK 237
>gi|405971078|gb|EKC35934.1| Exosome complex exonuclease RRP41 [Crassostrea gigas]
Length = 245
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 106/258 (41%), Gaps = 57/258 (22%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR ++LR + C + +A GSA +V
Sbjct: 13 RIDGRRSHELRKIQCKLGVFSQADGSA------------------------------YVE 42
Query: 65 SGDTKVLAAVYGPKA--GTKKNENPEK---------ASIEVIWKPRTGQIGKPEKEYEII 113
G+TKVLAAVYGP G++ +K A+ + R + + +E +
Sbjct: 43 QGNTKVLAAVYGPHEIRGSRSKLLQDKVLVNCQYSMATFSTSERKRRPRGDRKSQEMTMH 102
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
L++T + + +++P + + ++V+ DG ++NAA A++DAGIPMK +C
Sbjct: 103 LQQTFNAAILTSLHPRSQIDIFVEVLQSDGGNYCASVNAATLAVIDAGIPMKDY---VCA 159
Query: 174 CSAE--SGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLV----QGEPMEHGIIT 227
CSA I+D LEE P ++VLP+ +V G E +
Sbjct: 160 CSASYLGDSPIVDINYLEESSGS-------PEITVAVLPKSEQIVFLEMNGRLHEDNLSK 212
Query: 228 SVTHGAMSVDDYFHCLER 245
V D + L+R
Sbjct: 213 VVDMAVKGCKDVYGVLDR 230
>gi|409096213|ref|ZP_11216237.1| exosome complex exonuclease Rrp41 [Thermococcus zilligii AN1]
Length = 249
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 82/195 (42%), Gaps = 40/195 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR ++LR + +L A GSA + W
Sbjct: 17 RIDGRKKHELRQIRMEVGVLKNADGSA---------------------------YIEW-- 47
Query: 65 SGDTKVLAAVYGPKAGTKKN-ENPEKASIEVIWK------PRTGQIGKPEKEYEI--ILK 115
G+ K++AAVYGP+ K+ + PE A + V + + G + EI ++
Sbjct: 48 -GNNKIIAAVYGPREIHPKHLQRPETAILRVRYNMAPFSVEERKKPGPDRRSVEISKVIH 106
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
LQ IL + P T V I+V+ D I AA AL DAGIPM+ L VA C
Sbjct: 107 GALQPALILEMFPRTVIDVFIEVLQADAGTRVAGITAASLALADAGIPMRDL-VAACAAG 165
Query: 176 AESGYCILDPTKLEE 190
G +LDP K E+
Sbjct: 166 KIDGEIVLDPNKEED 180
>gi|294464242|gb|ADE77635.1| unknown [Picea sitchensis]
Length = 243
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 86/196 (43%), Gaps = 41/196 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P ++R L ++ +A GSA + G
Sbjct: 10 RLDGRRPLEMRQLHAQLGVVDKADGSAIFEMG---------------------------- 41
Query: 65 SGDTKVLAAVYGPKAGTKKNEN-PEKASIEVIW---------KPRTGQIGKPEKEYEIIL 114
+TKV+AAVYGP KN+ P++A + + +PR + + E +++
Sbjct: 42 --NTKVIAAVYGPHEVQNKNQQLPDQALVRCEYSMANFSTGDRPRRSKGDRRATEISLVI 99
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
++T+++ + + P T + +QV+ DG INAA AL DAGIPM L V C
Sbjct: 100 RQTMEATILTHLMPRTQIDIFVQVLQADGGTRSACINAATLALADAGIPMCDL-VTSCAA 158
Query: 175 SAESGYCILDPTKLEE 190
+ +LD +E+
Sbjct: 159 GYLNSTPLLDMNYMED 174
>gi|320101499|ref|YP_004177091.1| ribosomal RNA-processing protein RRP41/SKI6 [Desulfurococcus
mucosus DSM 2162]
gi|319753851|gb|ADV65609.1| ribosomal RNA-processing protein RRP41/SKI6 [Desulfurococcus
mucosus DSM 2162]
Length = 243
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 78/172 (45%), Gaps = 39/172 (22%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P++LRP+ + +L A+GSA V
Sbjct: 14 RVDGRRPDELRPVRIAIGVLKNANGSA------------------------------LVE 43
Query: 65 SGDTKVLAAVYGPKAGTKKNEN-PEKASIEVIW--------KPRTGQIGKPEKEYEIILK 115
G+TK LAAVYGP+ K+ + P++A + V + + ++ + E E +++
Sbjct: 44 YGNTKALAAVYGPREAMPKHISLPDRAVLRVRYHMAPFSTSERKSPAPSRREIELSKVIR 103
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHL 167
L+S+ T P + V I+++ DG + AA AL DAGIPMK L
Sbjct: 104 EALESVVFTTQYPRASIDVFIEILQADGGTRTAGLTAASLALADAGIPMKDL 155
>gi|453089972|gb|EMF18012.1| hypothetical protein SEPMUDRAFT_15620, partial [Mycosphaerella
populorum SO2202]
Length = 197
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 71/142 (50%), Gaps = 10/142 (7%)
Query: 70 VLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPN 129
V+A V GP +++E P++A+IEV +P +G G E+ E +++ L+SI ++ ++P
Sbjct: 26 VIAGVNGPVDVQRRDELPDQAAIEVNLRPTSGVGGPRERWLETVIQSVLKSIVLVHMHPR 85
Query: 130 TTTSVIIQVVHD----------DGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESG 179
T V +Q+ + D + LP +NAA ALVD G+PM A+ A +G
Sbjct: 86 TLIQVTLQITKEPATKFRKTTTDISTLPALLNAAFIALVDGGLPMATTMSAVLAVVATNG 145
Query: 180 YCILDPTKLEEQKMKGFAYLVF 201
IL P Q L F
Sbjct: 146 ETILSPNANAIQNSSSVHALAF 167
>gi|346469377|gb|AEO34533.1| hypothetical protein [Amblyomma maculatum]
Length = 287
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/282 (24%), Positives = 112/282 (39%), Gaps = 57/282 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +RP+ ++ +A GSA +V
Sbjct: 35 RHDGRQFGDIRPIFLKTGVVSQAKGSA------------------------------YVE 64
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWK-------PRTGQIGKPEK-EYEIILKR 116
G+TKV+ +VYGP+ ++ + K I ++ R + E + +L+
Sbjct: 65 MGNTKVVCSVYGPREIARRKDFTYKGQINCEFRFAQYSCQIRRQHLNDSEALHFSQLLEE 124
Query: 117 TLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSA 176
L + L P +T V + V+ +DG L AI A AL DAGI M + + C
Sbjct: 125 ALAPVVCLHKFPKSTVDVFVYVLENDGGALASAITTAGLALADAGIDMYDVVIG-CSLRQ 183
Query: 177 ESGYCILDPTKLEEQK-------MKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSV 229
+ C+LDPT EE +GF + + + L + ++LVQ ++ + S
Sbjct: 184 DGSTCLLDPTYREETAPVGAENIDRGFGRMTL--AFMPALQQVAALVQDGDLDAATVVSD 241
Query: 230 THGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGDLSK 271
M+ + L + D L + L+ KL GD+ K
Sbjct: 242 LRALMNACHEIYPL---------VQDVLIKDLEEKLEGDMKK 274
>gi|14591333|ref|NP_143411.1| exosome complex exonuclease Rrp41 [Pyrococcus horikoshii OT3]
gi|29336584|sp|O59223.1|ECX1_PYRHO RecName: Full=Probable exosome complex exonuclease 1
gi|3257978|dbj|BAA30661.1| 249aa long hypothetical protein [Pyrococcus horikoshii OT3]
Length = 249
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 84/195 (43%), Gaps = 40/195 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +LRP+ +L A+GSA + W
Sbjct: 17 RIDGRKKYELRPIKMKVGVLKNANGSA---------------------------YIEW-- 47
Query: 65 SGDTKVLAAVYGPKA-GTKKNENPEKASIEVIWK------PRTGQIGKPEKEYEI--ILK 115
G K++AAVYGP+ +K + P++A + V + + G + EI ++K
Sbjct: 48 -GRNKIIAAVYGPRELHSKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSIEISKVIK 106
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
L+ IL + P T+ V I+V+ D I AA AL DAGIPM+ L VA C
Sbjct: 107 GALEPALILEMFPRTSIDVFIEVLQADAGTRVAGITAASLALADAGIPMRDL-VAACAAG 165
Query: 176 AESGYCILDPTKLEE 190
G +LD K E+
Sbjct: 166 KIEGEIVLDLNKEED 180
>gi|66802544|ref|XP_635144.1| hypothetical protein DDB_G0291328 [Dictyostelium discoideum AX4]
gi|60463463|gb|EAL61648.1| hypothetical protein DDB_G0291328 [Dictyostelium discoideum AX4]
Length = 247
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/273 (26%), Positives = 113/273 (41%), Gaps = 68/273 (24%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR N+LR + I RA GSA + QG
Sbjct: 13 RIDGRRANELRRINVEMGIFKRADGSAYYEQG---------------------------- 44
Query: 65 SGDTKVLAAVYGPKAGTKKNENP-EKASIE----------VIWKPRTGQIG-KPEKEYEI 112
+TK++AAVYGP+ + + ++A ++ KP+ G + E
Sbjct: 45 --NTKIIAAVYGPREISVSGKGVFDRAVVKCEFSSSSFSTTERKPQQKTKGDRVTTEIAN 102
Query: 113 ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAIC 172
++K+ +S + P + ++ +QV+ DG L AINA+ AL+DAGI MK IC
Sbjct: 103 LVKQAFESTIHTHLYPRSQINIYLQVLQSDGGLKAAAINASTLALIDAGISMKDF---IC 159
Query: 173 CCSAE--SGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVT 230
CS G +LD +EE+ P+ +LS+ +P G+I+
Sbjct: 160 ACSTSCIDGIAVLDLNNIEERSGG-------PDCLLSI----------QPQIGGVISLNM 202
Query: 231 HGAMSVDDYFHCLERGRAASAK----LSDFLRR 259
+ D + LE G K LSD++++
Sbjct: 203 DSKVPQDLFESVLELGEKGCKKIFSILSDYVKK 235
>gi|298674553|ref|YP_003726303.1| exosome complex exonuclease 1 [Methanohalobium evestigatum Z-7303]
gi|298287541|gb|ADI73507.1| exosome complex exonuclease 1 [Methanohalobium evestigatum Z-7303]
Length = 333
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 86/204 (42%), Gaps = 54/204 (26%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +++RP+ +L RA GS CY W
Sbjct: 15 RVDGRRTDEIRPMKVDIGVLSRADGS--------------------------CYL-EW-- 45
Query: 65 SGDTKVLAAVYGPKA-GTKKNENPEKA-----------SIEVIWKP----RTGQIGKPEK 108
G+ K+++AVYGP+ ++ + P+ A S+E +P R+ +I K
Sbjct: 46 -GNNKIISAVYGPRELHPRRMQRPDAAVIRYKYNMASFSVEDRQRPGPSRRSSEISK--- 101
Query: 109 EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLA 168
+ + + + PNT V +V+ D AINAA AL+DAGIP+K L
Sbjct: 102 ----VSSEAFEPVVMTQFYPNTVIDVFSEVLEADAGTRTAAINAATLALIDAGIPLKSL- 156
Query: 169 VAICCCSAESGYCILDPTKLEEQK 192
V+ C G +LD K E+ +
Sbjct: 157 VSACAVGKVDGQLVLDLNKKEDNE 180
>gi|332157779|ref|YP_004423058.1| exosome complex exonuclease Rrp41 [Pyrococcus sp. NA2]
gi|331033242|gb|AEC51054.1| exosome complex exonuclease Rrp41 [Pyrococcus sp. NA2]
Length = 249
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 82/195 (42%), Gaps = 40/195 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +LRP+ +L A GSA + W
Sbjct: 17 RIDGRKKYELRPIKMEVGVLKNADGSA---------------------------YIEW-- 47
Query: 65 SGDTKVLAAVYGPKAGTKKN-ENPEKASIEVIWK------PRTGQIGKPEKEYEI--ILK 115
G K++AAVYGPK K+ + P++A + V + + G + EI ++K
Sbjct: 48 -GKNKIIAAVYGPKELHPKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSIEISKVIK 106
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
L+ IL + P T V I+V+ D I AA AL DAGIPM+ L VA C
Sbjct: 107 GALEPALILEMFPRTAIDVFIEVLQADAGTRVAGITAASLALADAGIPMRDL-VAACAAG 165
Query: 176 AESGYCILDPTKLEE 190
G +LD K E+
Sbjct: 166 KIEGEIVLDLNKEED 180
>gi|219127863|ref|XP_002184146.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217404377|gb|EEC44324.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 274
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/277 (25%), Positives = 119/277 (42%), Gaps = 66/277 (23%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P+++R + S L S S G ++
Sbjct: 17 RNDGRKPHEIRRMRVQMSPL-----SVSTISGSALVEM---------------------- 49
Query: 65 SGDTKVLAAVYGPKAGTKK-NENPEKASIEVIWKPR------TGQIGKPEKEYEII---- 113
G T VLA V GP ++ +ENP++A ++V + ++ P+ + +I
Sbjct: 50 -GLTVVLATVRGPVDCLRRADENPDQAVLDVTVQSAPFSSSADRRVANPKTDRRLIEASH 108
Query: 114 -LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAIC 172
LKR +++ +L + P + +++ V+ DDG L AINAA AL+DAGIPMK +C
Sbjct: 109 MLKRAMEAAILLHLYPKSRIELVVSVLADDGGRLCAAINAATLALMDAGIPMKDF---VC 165
Query: 173 CCSA----------ESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGE--- 219
CSA ++D + EE G A P +++LP+ ++LV +
Sbjct: 166 ACSAGLPGTSATPDSHALTLVDLNRQEESSTGGQAATHMP---VALLPQRNTLVLAQCEA 222
Query: 220 ------PMEHGIITSVTHGAMSVDDYFHCLERGRAAS 250
+E ++ + T G +V D R AA+
Sbjct: 223 RLPNLDTLER-VLDAATEGCRAVFDILQAAVREHAAT 258
>gi|375082088|ref|ZP_09729158.1| exosome complex exonuclease Rrp41 [Thermococcus litoralis DSM 5473]
gi|374743301|gb|EHR79669.1| exosome complex exonuclease Rrp41 [Thermococcus litoralis DSM 5473]
Length = 247
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 83/195 (42%), Gaps = 40/195 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +LRP+ +L A GSA + W
Sbjct: 17 RLDGRKKYELRPIKMEVGVLKSADGSA---------------------------YVEW-- 47
Query: 65 SGDTKVLAAVYGPKAGTKKN-ENPEKASIEVIWK------PRTGQIGKPEKEYEI--ILK 115
G K+LAAVYGP+ K+ + P++A + V + + G + EI +++
Sbjct: 48 -GKNKILAAVYGPREIHPKHLQKPDRAILRVRYNMAPFSVEERKKPGPDRRSVEISKVIR 106
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
L+ IL + P T+ V I+V+ D I AA AL DAGIPM+ L VA C
Sbjct: 107 GALEPAVILELFPRTSIDVFIEVLQADAGTRVAGITAASLALADAGIPMRDL-VAACAAG 165
Query: 176 AESGYCILDPTKLEE 190
G +LD K E+
Sbjct: 166 KIDGEIVLDLNKEED 180
>gi|432906534|ref|XP_004077577.1| PREDICTED: exosome complex component RRP46-like [Oryzias latipes]
Length = 185
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 100/256 (39%), Gaps = 81/256 (31%)
Query: 14 LRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLAA 73
LR C S+L R GSAS+ QG DT V+A
Sbjct: 11 LREFGCEQSLLSRPDGSASFVQG------------------------------DTSVMAG 40
Query: 74 VYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTS 133
VYGP E ++A++EV+ +P+ G E+ E ++ T + +LT++P ++ +
Sbjct: 41 VYGPAEVKVSKEIYDRATLEVLVQPKVGLPSVRERSQEQCVRETCEEALLLTLHPRSSLT 100
Query: 134 VIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKM 193
+++QV+HDDG+LL C Y D T LE + +
Sbjct: 101 LVLQVLHDDGSLLSC-------------------------------YHTPDLTLLESRAL 129
Query: 194 KGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKL 253
FA + E ++ S T G+ SV + C+ + AS ++
Sbjct: 130 MTFAI--------------------DSKERKVMMSSTKGSFSVHELQQCVAVSQRASERI 169
Query: 254 SDFLRRSLQSKLPGDL 269
F R S++ + L
Sbjct: 170 FQFYRDSVRRRYSKSL 185
>gi|124027456|ref|YP_001012776.1| ribonuclease PH [Hyperthermus butylicus DSM 5456]
gi|254782534|sp|A2BKC0.1|ECX1_HYPBU RecName: Full=Probable exosome complex exonuclease 1
gi|123978150|gb|ABM80431.1| ribonuclease PH [Hyperthermus butylicus DSM 5456]
Length = 255
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 110/269 (40%), Gaps = 57/269 (21%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P QLRP+ +L A GSA V
Sbjct: 25 RHDGRLPEQLRPIRMEVGVLSNADGSA------------------------------LVE 54
Query: 65 SGDTKVLAAVYGPKAGTKKNEN-PEKASIEVIW--------KPRTGQIGKPEKEYEIILK 115
G T+V+AAVYGP+ ++ P++A I + + +T + E E +++
Sbjct: 55 YGGTRVIAAVYGPREAHPRHVALPDRAIIRCRYHMAPFSTAERKTPAPTRREVELSKVIR 114
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
L+++ I + P T V ++V+ DG AI AA AL DAGI M+ L +
Sbjct: 115 EALEAVVISELYPRTAIDVYMEVLQSDGGTRTAAITAASLALADAGIAMRDLVAGVAVGK 174
Query: 176 AESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMS 235
+ G +LD ++E+ + + S+ VL L+Q +G ++
Sbjct: 175 VD-GVLVLDIDEIEDNYAEADMPVAMAPSLDKVL-----LLQ------------LNGVLT 216
Query: 236 VDDYFHCLERGRAASAKLSDFLRRSLQSK 264
D++ LE R + + + +L+ K
Sbjct: 217 HDEFVKALELARKGIQVIYNLQKEALRKK 245
>gi|14520826|ref|NP_126301.1| exosome complex exonuclease Rrp41 [Pyrococcus abyssi GE5]
gi|29337010|sp|Q9V119.1|ECX1_PYRAB RecName: Full=Probable exosome complex exonuclease 1
gi|170292234|pdb|2PNZ|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
Complexed With Udp And Gmp
gi|170292236|pdb|2PO0|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
Complexed With Adp In Double Conformation
gi|170292239|pdb|2PO1|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
Complexed With A Single Stranded 10-Mer Poly(A) Rna
gi|170292241|pdb|2PO2|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
Complexed With Cdp
gi|5458042|emb|CAB49532.1| rph ribonuclease PH, exosome complex exonuclease [Pyrococcus abyssi
GE5]
gi|380741368|tpe|CCE70002.1| TPA: exosome complex exonuclease Rrp41 [Pyrococcus abyssi GE5]
Length = 249
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 108/269 (40%), Gaps = 57/269 (21%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +LRP+ +L A+GSA + W
Sbjct: 17 RIDGRKKYELRPIKMEVGVLKNANGSA---------------------------YIEW-- 47
Query: 65 SGDTKVLAAVYGPKAGTKKN-ENPEKASIEVIWK------PRTGQIGKPEKEYEI--ILK 115
G K++AAVYGP+ K+ + P++A + V + + G + EI ++K
Sbjct: 48 -GKNKIIAAVYGPRELHPKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSIEISKVIK 106
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
L+ IL + P T V I+V+ D I AA AL DAGIPM+ L VA C
Sbjct: 107 GALEPALILEMFPRTAIDVFIEVLQADAGTRVAGITAASLALADAGIPMRDL-VAACAAG 165
Query: 176 AESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMS 235
G +LD K E+ + P +I+ P+++ I G ++
Sbjct: 166 KIEGEIVLDLNKEEDN----YGEADVPVAIM-------------PLKNDITLLQMDGYLT 208
Query: 236 VDDYFHCLERGRAASAKLSDFLRRSLQSK 264
D++ ++ + + R +L+ K
Sbjct: 209 KDEFIEAVKLAIKGAKAVYQKQREALKEK 237
>gi|346466185|gb|AEO32937.1| hypothetical protein [Amblyomma maculatum]
Length = 284
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 98/225 (43%), Gaps = 53/225 (23%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P++ R +AC + +A GSA ++
Sbjct: 51 RLDGRKPSEQRKIACRLGVFGQADGSA------------------------------YIE 80
Query: 65 SGDTKVLAAVYGPKA--GTKKNENPEK---------ASIEVIWKPRTGQIGKPEKEYEII 113
G+ KVLAAVYGP G++ ++ A+ + + R + K +E +
Sbjct: 81 QGNAKVLAAVYGPHEPRGSRSRSFHDRVIVNCQFSMATFSTLERKRRPRGDKKSQEMTLH 140
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
+++ ++ + + P + + ++ + DG L INAA AL+DAGI +K +C
Sbjct: 141 IQQAFEASILTQLYPRSQIDIFVETLQSDGGTLSVCINAATLALIDAGIALKDY---VCA 197
Query: 174 CSAE--SGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLV 216
CS G ++D + LEE M+G P ++VLP+ +V
Sbjct: 198 CSVGFVEGVPLVDISNLEE-SMRG------PELTVAVLPKSQEMV 235
>gi|212721602|ref|NP_001131612.1| RNase PH homolog [Zea mays]
gi|194692034|gb|ACF80101.1| unknown [Zea mays]
gi|413948419|gb|AFW81068.1| exosome complex exonuclease RRP41 isoform 1 [Zea mays]
gi|413948420|gb|AFW81069.1| exosome complex exonuclease RRP41 isoform 2 [Zea mays]
gi|413948421|gb|AFW81070.1| exosome complex exonuclease RRP41 isoform 3 [Zea mays]
gi|413948422|gb|AFW81071.1| exosome complex exonuclease RRP41 isoform 4 [Zea mays]
Length = 242
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 93/201 (46%), Gaps = 50/201 (24%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR PN++R L ++ RA GSA + G
Sbjct: 11 RVDGRRPNEMRQLKGEVGVVARADGSALFEMG---------------------------- 42
Query: 65 SGDTKVLAAVYGPKAGTKKNE--NPEKASIEVIWKPRTGQIG----KPE-----KEYEII 113
+T+V+AAVYGP+ K + N ++A + ++ G KP+ E ++
Sbjct: 43 --NTRVIAAVYGPREVQNKGQQVNSKEALVRCEYRMAEFSTGDRRRKPKGDRRSTEISLV 100
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
+++T+++ + + P++ + +QV+ DG INAA AL DAGIPM+ +A +
Sbjct: 101 IRQTMEASILTHLMPHSQIDIYVQVLQADGGTRSACINAATLALADAGIPMRDIATS--- 157
Query: 174 CSAESGYC----ILDPTKLEE 190
CSA GY +LD LE+
Sbjct: 158 CSA--GYLCSTPLLDLNYLED 176
>gi|336477103|ref|YP_004616244.1| exosome complex exonuclease 1 [Methanosalsum zhilinae DSM 4017]
gi|335930484|gb|AEH61025.1| exosome complex exonuclease 1 [Methanosalsum zhilinae DSM 4017]
Length = 299
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 69/276 (25%), Positives = 111/276 (40%), Gaps = 60/276 (21%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +++RP+ +L RA GS CY W
Sbjct: 15 RLDGRRVDEIRPMKIDIGVLSRADGS--------------------------CYL-EW-- 45
Query: 65 SGDTKVLAAVYGPKA-GTKKNENPEKASIEVIWKPRTGQI------GKPEKEYEI--ILK 115
G KVLAAVYGP+ ++ + P+ A I + + + G + EI +
Sbjct: 46 -GKNKVLAAVYGPRTLHPRRKQIPDAALIRYRYNMASFSVEDRIRPGPSRRSVEISKVSA 104
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
+ + + PNT + +++ D AINAA AL DAGIPMK L V+ C
Sbjct: 105 EAFEPVVLTKFYPNTVIDIFTEIIQADAGTRTAAINAASIALADAGIPMKGL-VSACAVG 163
Query: 176 AESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVT-HGAM 234
G +LD K E+ F P ++ + G IT + G +
Sbjct: 164 KVDGQLVLDLNKDEDN----FGAADLPVAM---------------TQDGEITLIQMDGNL 204
Query: 235 SVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGDLS 270
+ +++ +E RA ++ + +++L +K D S
Sbjct: 205 TQEEFKEAIEMVRAGCMEILEIQKKALYTKFGDDSS 240
>gi|282165297|ref|YP_003357682.1| putative exosome complex exonuclease 1 [Methanocella paludicola
SANAE]
gi|282157611|dbj|BAI62699.1| putative exosome complex exonuclease 1 [Methanocella paludicola
SANAE]
Length = 254
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 86/200 (43%), Gaps = 50/200 (25%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR PN+LRP+ +L RA GS CY +
Sbjct: 13 RLDGRGPNELRPIKFKAGVLKRADGS--------------------------CYLEF--- 43
Query: 65 SGDTKVLAAVYGPKAGTKKN-ENPEKA-----------SIEVIWKPRTGQIGKPEKEYEI 112
G KV+AAVYGP+ ++ +N +A S+E +P G + EI
Sbjct: 44 -GGNKVMAAVYGPREVHPRHLQNASRAIVRYRYNMAAFSVEERKRP-----GPDRRSIEI 97
Query: 113 --ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVA 170
+ + L+S+ + + P + + ++++ D INAA AL DAGIPM+ L V+
Sbjct: 98 SKVSREALESVVLEELYPRSAVDIFVEILQADAGTRVAGINAASVALADAGIPMRCL-VS 156
Query: 171 ICCCSAESGYCILDPTKLEE 190
C G +LD K E+
Sbjct: 157 ACSVGKIDGEVVLDLNKDED 176
>gi|427785073|gb|JAA57988.1| Putative exosomal 3'-5' exoribonuclease complex subunit rrp41
[Rhipicephalus pulchellus]
Length = 284
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/281 (23%), Positives = 115/281 (40%), Gaps = 52/281 (18%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +RP+ ++ +A GSA ++
Sbjct: 34 RHDGRQFGDVRPIFLKTGVVSQAKGSA------------------------------YIE 63
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWK-------PRTGQIGKPEK-EYEIILKR 116
G+TKV+ +VYGP+ ++ + K I ++ R + E Y +L++
Sbjct: 64 MGNTKVVCSVYGPREIARRKDFTFKGQINCEFRFAQYSCPIRRQHLNDGEALHYSQLLEK 123
Query: 117 TLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSA 176
L + L P +T V + V+ +DG L CAI A AL DAGI M + V C
Sbjct: 124 ALAPVVCLHKFPKSTVDVFVLVIENDGGALACAITTAGLALADAGIDMYDVVVG-CSLRQ 182
Query: 177 ESGYCILDPTKLEE-QKMKGFAYLVFPNSILSVLP---EGSSLVQGEPMEHGIITSVTHG 232
+ C++DP+ EE ++ L F L +P + ++LVQ ++ + S
Sbjct: 183 DGSTCLIDPSYNEEVAPVEAKDDLSFGRMTLGFMPALQQVTALVQDGELDAASVVSDMKA 242
Query: 233 AMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGDLSKAE 273
++ + L + D L + ++ KL G++ K E
Sbjct: 243 LIAASHQIYPL---------VQDVLLKEVEEKLNGEMKKME 274
>gi|297821020|ref|XP_002878393.1| hypothetical protein ARALYDRAFT_486650 [Arabidopsis lyrata subsp.
lyrata]
gi|297324231|gb|EFH54652.1| hypothetical protein ARALYDRAFT_486650 [Arabidopsis lyrata subsp.
lyrata]
Length = 241
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 87/187 (46%), Gaps = 47/187 (25%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR N++R + ++ +A GSA + G
Sbjct: 10 RLDGRRFNEMRQIVAEVGVVSKADGSAVFEMG---------------------------- 41
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEK----------EYEIIL 114
+TKV+AAVYGP+ K++ + V+ + Q ++ E +++
Sbjct: 42 --NTKVIAAVYGPREIQNKSQQKKNDHAVVLCEYSMAQFSTGDRRRQKFDRRSTELSLVI 99
Query: 115 KRTLQSICILT-INPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
++T+++ CILT + P++ + +QV+ DG INAA AL DAGIPM+ LAV+
Sbjct: 100 RQTMEA-CILTELMPHSQIDIFLQVLQADGGTRSACINAATLALADAGIPMRDLAVS--- 155
Query: 174 CSAESGY 180
CSA GY
Sbjct: 156 CSA--GY 160
>gi|15233167|ref|NP_191721.1| exosome complex component RRP41 [Arabidopsis thaliana]
gi|186511299|ref|NP_001118878.1| exosome complex component RRP41 [Arabidopsis thaliana]
gi|6164938|gb|AAF04590.1|AF191741_1 exonuclease RRP41 [Arabidopsis thaliana]
gi|6850853|emb|CAB71092.1| exonuclease RRP41 [Arabidopsis thaliana]
gi|26452705|dbj|BAC43435.1| putative exonuclease RRP41 [Arabidopsis thaliana]
gi|28973161|gb|AAO63905.1| putative exonuclease RRP41 [Arabidopsis thaliana]
gi|332646711|gb|AEE80232.1| exosome complex component RRP41 [Arabidopsis thaliana]
gi|332646712|gb|AEE80233.1| exosome complex component RRP41 [Arabidopsis thaliana]
Length = 241
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 87/187 (46%), Gaps = 47/187 (25%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR N++R + ++ +A GSA + G
Sbjct: 10 RLDGRRFNEMRQIVAEVGVVSKADGSAVFEMG---------------------------- 41
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEK----------EYEIIL 114
+TKV+AAVYGP+ K++ + V+ + Q ++ E +++
Sbjct: 42 --NTKVIAAVYGPREIQNKSQQKKNDHAVVLCEYSMAQFSTGDRRRQKFDRRSTELSLVI 99
Query: 115 KRTLQSICILT-INPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
++T+++ CILT + P++ + +QV+ DG INAA AL DAGIPM+ LAV+
Sbjct: 100 RQTMEA-CILTELMPHSQIDIFLQVLQADGGTRSACINAATLALADAGIPMRDLAVS--- 155
Query: 174 CSAESGY 180
CSA GY
Sbjct: 156 CSA--GY 160
>gi|195435372|ref|XP_002065667.1| GK15569 [Drosophila willistoni]
gi|194161752|gb|EDW76653.1| GK15569 [Drosophila willistoni]
Length = 251
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 86/197 (43%), Gaps = 41/197 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P++LR + C + + GSA QG
Sbjct: 14 RLDGRRPHELRHIKCKLGVFEQPDGSAYMEQG---------------------------- 45
Query: 65 SGDTKVLAAVYGPKAGTKKNENPE-----------KASIEVIWKPRTGQIGKPEKEYEII 113
+TKVLAAVYGP KN++ E +A+ + + + +E+++
Sbjct: 46 --NTKVLAAVYGPHQAKGKNKSSESNDVIINCQYSQATFSTAERKNRPRGDRKSQEFKMY 103
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
L++ L + + P + V ++V+ DGA A+NAA AL+DAGI + VA
Sbjct: 104 LQQALSAAIKSELYPRSQIDVYVEVLQADGANYAVALNAATLALIDAGICLNEFIVACTA 163
Query: 174 CSAESGYCILDPTKLEE 190
++S + D +++EE
Sbjct: 164 SLSKSNIPLTDISQVEE 180
>gi|195622232|gb|ACG32946.1| exosome complex exonuclease RRP41 [Zea mays]
Length = 242
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 93/201 (46%), Gaps = 50/201 (24%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR PN++R L ++ RA GSA + G
Sbjct: 11 RVDGRRPNEMRQLKGEVGVVVRADGSALFEMG---------------------------- 42
Query: 65 SGDTKVLAAVYGPKAGTKKNE--NPEKASIEVIWKPRTGQIG----KPE-----KEYEII 113
+T+V+AAVYGP+ K + N ++A + ++ G KP+ E ++
Sbjct: 43 --NTRVIAAVYGPREVQNKGQQVNSKEALVRCEYRMAEFSTGDRRRKPKGDRRSTEISLV 100
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
+++T+++ + + P++ + +QV+ DG INAA AL DAGIPM+ +A +
Sbjct: 101 IRQTMEASILTHLMPHSQIDIYVQVLQADGGTRSACINAATLALADAGIPMRDIATS--- 157
Query: 174 CSAESGYC----ILDPTKLEE 190
CSA GY +LD LE+
Sbjct: 158 CSA--GYLCSTPLLDLNYLED 176
>gi|347524281|ref|YP_004781851.1| exosome complex exonuclease 1 [Pyrolobus fumarii 1A]
gi|343461163|gb|AEM39599.1| exosome complex exonuclease 1 [Pyrolobus fumarii 1A]
Length = 248
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 86/196 (43%), Gaps = 40/196 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P++LRP+ +L A GSA +V
Sbjct: 21 RHDGRAPDELRPIRMEVGVLSNADGSA------------------------------YVE 50
Query: 65 SGDTKVLAAVYGPKAGTKKNEN-PEKASIEVIW--------KPRTGQIGKPEKEYEIILK 115
G T+V+AAVYGP+ K+ P++A I + + ++ + E E +++
Sbjct: 51 FGRTRVIAAVYGPREVHPKHMALPDRALIRCRYHMAPFSTDERKSPAPTRREIELSKVIR 110
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
L+ + + P TT + I+V+ DG A+ AA AL DAG+ M+ L +
Sbjct: 111 EALEPVVFTELYPRTTIDIFIEVIEADGGTRTAAVTAASLALADAGVQMRDLVAGVAVGK 170
Query: 176 AESGYCILDPTKLEEQ 191
+ G +LD +LE++
Sbjct: 171 VQ-GVLVLDIDQLEDE 185
>gi|346469375|gb|AEO34532.1| hypothetical protein [Amblyomma maculatum]
Length = 287
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 68/282 (24%), Positives = 112/282 (39%), Gaps = 57/282 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +RP+ ++ +A GSA +V
Sbjct: 35 RHDGRQFGDIRPIFLKTGVVSQAKGSA------------------------------YVE 64
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWK-------PRTGQIGKPEK-EYEIILKR 116
G+TKV+ +VYGP+ ++ + K I ++ R + E + +L+
Sbjct: 65 MGNTKVVCSVYGPREIARRKDFTYKGQINCEFRFAQYSCQIRRQHLNDSEALHFSQLLEE 124
Query: 117 TLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSA 176
L + L P +T V + V+ +DG L AI A AL DAGI M + + C
Sbjct: 125 ALAPVVCLHKFPKSTVDVFVYVLENDGGALASAITTAGLALADAGIDMYDVVIG-CSLRQ 183
Query: 177 ESGYCILDPTKLEEQK-------MKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSV 229
+ C+LDPT EE +GF + + + L + ++LVQ ++ + S
Sbjct: 184 DGSTCLLDPTYREETAPVGAENIDRGFGRMTL--AFMPALQQVAALVQDGDLDAATVVSD 241
Query: 230 THGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGDLSK 271
M+ + L + D L + L+ KL GD+ K
Sbjct: 242 LRVLMNACHEIYPL---------VQDVLIKDLEEKLEGDMKK 274
>gi|442749707|gb|JAA67013.1| Putative exosomal 3'-5' exoribonuclease complex subunit rrp41
[Ixodes ricinus]
Length = 246
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 97/232 (41%), Gaps = 47/232 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P + R + C + +A GSA ++
Sbjct: 13 RLDGRKPTEQRKIDCRLGVFSQADGSA------------------------------YIE 42
Query: 65 SGDTKVLAAVYGPKA--GTKKNENPEK---------ASIEVIWKPRTGQIGKPEKEYEII 113
G+ KVLAAVYGP G + ++ A+ + R + K +E +
Sbjct: 43 QGNAKVLAAVYGPHEPRGNRSRALHDRVLVNCQFSMATFSTFERKRRPRGDKKSQEMTLH 102
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
+++T ++ + + P + + ++V+ DG L +NAA AL+DAGI +K +C
Sbjct: 103 IQQTFEATILTQLYPRSQIDIFVEVLQSDGGTLSVCVNAATLALIDAGIALKDY---VCA 159
Query: 174 CSAE--SGYCILDPTKLEE-QKMKGFAYLVFPNSILSVLPEGSSLVQGEPME 222
CS G ++D + +EE + V P S VL E SS V + +E
Sbjct: 160 CSVGFIDGVPLVDISSIEESNRGPELTVAVLPKSQQIVLLEMSSRVHVDNLE 211
>gi|315229927|ref|YP_004070363.1| exosome complex exonuclease 1 [Thermococcus barophilus MP]
gi|315182955|gb|ADT83140.1| exosome complex exonuclease 1 [Thermococcus barophilus MP]
Length = 246
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 82/195 (42%), Gaps = 40/195 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +LRP+ +L A GSA + W
Sbjct: 16 RIDGRKKYELRPIKMEVGVLKNADGSA---------------------------YIEW-- 46
Query: 65 SGDTKVLAAVYGPKAGTKKN-ENPEKASIEVIWK------PRTGQIGKPEKEYEI--ILK 115
G K+LAAVYGP+ K+ + P++A + V + + G + EI +++
Sbjct: 47 -GKNKILAAVYGPREIHPKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSVEISKVIR 105
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
L+ IL + P T V I+V+ D I AA AL DAGIPMK L V+ C
Sbjct: 106 GALEPAIILELFPRTAIDVFIEVLQADAGTRVAGITAASLALADAGIPMKDL-VSACAAG 164
Query: 176 AESGYCILDPTKLEE 190
G +LD K E+
Sbjct: 165 KIEGQIVLDLNKEED 179
>gi|159040754|ref|YP_001540006.1| exosome complex exonuclease 1 [Caldivirga maquilingensis IC-167]
gi|157919589|gb|ABW01016.1| exosome complex exonuclease 1 [Caldivirga maquilingensis IC-167]
Length = 242
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 87/200 (43%), Gaps = 40/200 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P + RP+ +L A+GSA V
Sbjct: 15 RVDGRLPEEHRPVTMQVGVLPNANGSA------------------------------LVA 44
Query: 65 SGDTKVLAAVYGPKAGTKKNEN-PEKASIEVIWKP---RTGQIGKP---EKEYEI--ILK 115
G+T VLAAVYGP+ + P+KA + V + T P +E EI ++K
Sbjct: 45 YGNTVVLAAVYGPREPIPRYITVPDKAVVRVRYHMAPFSTDDRKNPAPTRREIEISKVVK 104
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
+ L+++ L P +T V ++V+ DG+ +I AA AL DAGIPM+ L V +
Sbjct: 105 QALETVVFLEQYPKSTIDVFLEVLQADGSTRVTSITAASLALADAGIPMRDLVVGVSVGK 164
Query: 176 AESGYCILDPTKLEEQKMKG 195
I+D KLE+ G
Sbjct: 165 INDT-VIVDLNKLEDNYGDG 183
>gi|242091341|ref|XP_002441503.1| hypothetical protein SORBIDRAFT_09g028170 [Sorghum bicolor]
gi|241946788|gb|EES19933.1| hypothetical protein SORBIDRAFT_09g028170 [Sorghum bicolor]
Length = 242
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 91/201 (45%), Gaps = 50/201 (24%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR PN++R L I+ RA GSA + G
Sbjct: 11 RVDGRRPNEMRQLKGEVGIVARADGSALFEMG---------------------------- 42
Query: 65 SGDTKVLAAVYGPKAGTKKNE--NPEKASIEVIWKPRTGQIG----KPE-----KEYEII 113
+T+V+AAVYGP+ K + N +A + ++ G KP+ E ++
Sbjct: 43 --NTRVIAAVYGPREVQNKGQQVNSNEALVRCEYRMAEFSTGDRRRKPKGDRRSTEISLV 100
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
+++T+++ + + P++ + +QV+ DG INAA AL DAGIPM+ + +
Sbjct: 101 IRQTMEASILTHLMPHSQIDIYVQVLQADGGTRSACINAATLALADAGIPMRDI---VTS 157
Query: 174 CSAESGYC----ILDPTKLEE 190
CSA GY +LD LE+
Sbjct: 158 CSA--GYLCSTPLLDLNYLED 176
>gi|212223175|ref|YP_002306411.1| exosome complex exonuclease Rrp41 [Thermococcus onnurineus NA1]
gi|226740341|sp|B6YSI2.1|ECX1_THEON RecName: Full=Probable exosome complex exonuclease 1
gi|212008132|gb|ACJ15514.1| 3'-5' exoribonuclease [Thermococcus onnurineus NA1]
Length = 249
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 82/195 (42%), Gaps = 40/195 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +LRP+ +L A GSA + W
Sbjct: 17 RIDGRKKYELRPIKMEVGVLKNADGSA---------------------------YVEW-- 47
Query: 65 SGDTKVLAAVYGPKAGTKKN-ENPEKASIEVIWK------PRTGQIGKPEKEYEI--ILK 115
G K+LAAVYGP+ K+ + P++A + V + + G + EI +++
Sbjct: 48 -GKNKILAAVYGPREIHPKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSVEISKVIR 106
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
L+ IL + P T + I+V+ D I AA AL DAGIPM+ L VA C
Sbjct: 107 GALEPALILEMFPRTAIDIFIEVLQADAGTRVAGITAASLALADAGIPMRDL-VAACAAG 165
Query: 176 AESGYCILDPTKLEE 190
G +LD K E+
Sbjct: 166 KIEGEIVLDLNKEED 180
>gi|427781741|gb|JAA56322.1| Putative exosome component 4 [Rhipicephalus pulchellus]
Length = 246
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 104/240 (43%), Gaps = 49/240 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P + R +AC + +A GSA ++
Sbjct: 13 RLDGRKPFEQRKIACRLGVFTQADGSA------------------------------YIE 42
Query: 65 SGDTKVLAAVYGPKA--GTKKNENPEK---------ASIEVIWKPRTGQIGKPEKEYEII 113
G+ KVLAAVYGP G++ ++ A+ + + R + K +E +
Sbjct: 43 QGNAKVLAAVYGPHEPRGSRSRSFHDRVLVNCQFSMATFSTLERKRRPRGDKKSQEMTLH 102
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
+++ ++ + + P + + ++V+ DG L INAA AL+DAGI +K +C
Sbjct: 103 IQQAFEASILTQLYPRSQIDIFVEVLQSDGGTLSVCINAATLALIDAGIALKDY---VCA 159
Query: 174 CSAE--SGYCILDPTKLEEQKMKG--FAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSV 229
CS G ++D + LEE ++G V P S VL E +S V + ++ + +V
Sbjct: 160 CSVGFVDGVPLVDISHLEE-SLRGPELTVAVLPKSQQMVLLEMTSRVHVDNLQKMLDAAV 218
>gi|390960833|ref|YP_006424667.1| exosome complex exonuclease Rrp41 [Thermococcus sp. CL1]
gi|390519141|gb|AFL94873.1| exosome complex exonuclease Rrp41 [Thermococcus sp. CL1]
Length = 249
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 82/195 (42%), Gaps = 40/195 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +LRP+ +L A GSA + W
Sbjct: 17 RIDGRKKYELRPIKMEVGVLKNADGSA---------------------------YVEW-- 47
Query: 65 SGDTKVLAAVYGPKAGTKKN-ENPEKASIEVIWK------PRTGQIGKPEKEYEI--ILK 115
G K+LAAVYGP+ K+ + P++A + V + + G + EI +++
Sbjct: 48 -GKNKILAAVYGPREIHPKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSVEISKVIR 106
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
L+ IL + P T V I+V+ D I AA AL DAG+PM+ L VA C
Sbjct: 107 GALEPALILEMFPRTAIDVFIEVLQADAGTRVAGITAASLALADAGVPMRDL-VAACAAG 165
Query: 176 AESGYCILDPTKLEE 190
G +LD K E+
Sbjct: 166 KIEGEIVLDLNKEED 180
>gi|57641569|ref|YP_184047.1| exosome complex exonuclease Rrp41 [Thermococcus kodakarensis KOD1]
gi|73919276|sp|Q5JIR6.1|ECX1_PYRKO RecName: Full=Probable exosome complex exonuclease 1
gi|57159893|dbj|BAD85823.1| exosome subunit Rrp41p homolog, 3'-5' exoribonuclease [Thermococcus
kodakarensis KOD1]
Length = 249
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 82/195 (42%), Gaps = 40/195 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +LRP+ +L A GSA + W
Sbjct: 17 RIDGRKKYELRPIKMEVGVLKNADGSA---------------------------YVEW-- 47
Query: 65 SGDTKVLAAVYGPKAGTKKN-ENPEKASIEVIWK------PRTGQIGKPEKEYEI--ILK 115
G KVLAAVYGP+ K+ + P++A + V + + G + EI +++
Sbjct: 48 -GKNKVLAAVYGPREIHPKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSVEISKVIR 106
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
L+ +L + P T V I+++ D I AA AL DAGIPMK L VA C
Sbjct: 107 GALEPALLLHMFPRTAIDVFIEILQADAGTRVAGITAASLALADAGIPMKDL-VAACAAG 165
Query: 176 AESGYCILDPTKLEE 190
G +LD K E+
Sbjct: 166 KIDGEIVLDLNKEED 180
>gi|326429591|gb|EGD75161.1| hypothetical protein PTSG_06814 [Salpingoeca sp. ATCC 50818]
Length = 241
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 90/224 (40%), Gaps = 49/224 (21%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR N+LR + + + A GSA + QG
Sbjct: 11 REDGRRANELRRVEANVGMFPHADGSAYFQQG---------------------------- 42
Query: 65 SGDTKVLAAVYGPKAGTKKNENP-------EKASIEVIWKPRTGQIGKPEKEYEIILKRT 117
DTKV+A V GPK G K + E A+ + + ++ + E + T
Sbjct: 43 --DTKVVAIVNGPKQGVGKAGDAGKVVCDFEMAAFSTTQRRKPLRLDRKNAELGSKIAST 100
Query: 118 LQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAE 177
+S + + P + + +QV+ DG +L AINA AL+DAG+ M +C C+A
Sbjct: 101 FESAIMTDLYPRSQIEISVQVLQADGGVLAVAINAVTLALMDAGVAMTDF---VCACTAS 157
Query: 178 --SGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGE 219
G +LD E P ++VLP S++V E
Sbjct: 158 VIDGTNVLDINHYEASAQG-------PELTIAVLPSSSTIVMAE 194
>gi|341582108|ref|YP_004762600.1| exosome complex exonuclease Rrp41 [Thermococcus sp. 4557]
gi|340809766|gb|AEK72923.1| exosome complex exonuclease Rrp41 [Thermococcus sp. 4557]
Length = 249
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 83/196 (42%), Gaps = 40/196 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +LRP+ +L A GSA + W
Sbjct: 17 RVDGRKKYELRPIKMEVGVLKNADGSA---------------------------YVEW-- 47
Query: 65 SGDTKVLAAVYGPKAGTKKN-ENPEKASIEVIWK------PRTGQIGKPEKEYEI--ILK 115
G K+LAAVYGP+ K+ + P++A + V + + G + EI +++
Sbjct: 48 -GKNKILAAVYGPREIHPKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSVEISKVIR 106
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
L+ IL + P T+ + I+V+ D I AA AL DAG+PM+ L VA C
Sbjct: 107 GALEPALILEMFPRTSIDLFIEVLQADAGTRVAGITAASLALADAGVPMRDL-VAACAAG 165
Query: 176 AESGYCILDPTKLEEQ 191
G +LD K E+
Sbjct: 166 KIEGEIVLDLNKDEDN 181
>gi|14601412|ref|NP_147949.1| exosome complex exonuclease Rrp41 [Aeropyrum pernix K1]
gi|29337017|sp|Q9YC03.1|ECX1_AERPE RecName: Full=Probable exosome complex exonuclease 1
gi|5105131|dbj|BAA80445.1| exosome complex exonuclease Rrp41 homologue [Aeropyrum pernix K1]
Length = 246
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 85/195 (43%), Gaps = 40/195 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P LRP+ ILH A GSA V
Sbjct: 17 RHDGRLPEDLRPVRMQVGILHNADGSA------------------------------LVE 46
Query: 65 SGDTKVLAAVYGPKAGTKK-NENPEKASIEVIW--------KPRTGQIGKPEKEYEIILK 115
G T+VLAAVYGP+ ++ P++A++ V + + ++ + E E +++
Sbjct: 47 FGRTRVLAAVYGPREPHQRFYVLPDRAALRVRYHMAPFSTDERKSPAPSRREIELSKVVR 106
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
L+ + + P T V ++V+ DG A+ AA AL DAGIPM+ L +
Sbjct: 107 EALEPVVLAEEFPRTVIDVFLEVLQADGGTRTAAVTAASLALADAGIPMRALVGGVAVGK 166
Query: 176 AESGYCILDPTKLEE 190
+ G ++D +LE+
Sbjct: 167 IQ-GVLVVDVDELED 180
>gi|389852857|ref|YP_006355091.1| exosome complex exonuclease Rrp41 [Pyrococcus sp. ST04]
gi|388250163|gb|AFK23016.1| exosome complex exonuclease Rrp41 [Pyrococcus sp. ST04]
Length = 249
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 83/195 (42%), Gaps = 40/195 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +LRP+ +L A+GSA + W
Sbjct: 17 RIDGRKKYELRPIKMKVGVLKNANGSA---------------------------YIEW-- 47
Query: 65 SGDTKVLAAVYGPKAGTKKN-ENPEKASIEVIWK------PRTGQIGKPEKEYEI--ILK 115
G K++AAVYGP+ K+ + P++A + V + + G + EI ++K
Sbjct: 48 -GRNKIIAAVYGPREIHPKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSIEISKVIK 106
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
L+ IL + P T + I+V+ D I AA AL DAGIPM+ L VA C
Sbjct: 107 GALEPALILEMFPRTAIDIFIEVLQADAGTRVAGITAASLALADAGIPMRDL-VAACAAG 165
Query: 176 AESGYCILDPTKLEE 190
G +LD K E+
Sbjct: 166 KIEGEIVLDLNKEED 180
>gi|357132600|ref|XP_003567917.1| PREDICTED: exosome complex component RRP41-like [Brachypodium
distachyon]
Length = 242
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 88/192 (45%), Gaps = 46/192 (23%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR PN++R L ++ RA GSA + G
Sbjct: 11 RVDGRRPNEMRQLKGEVGVVSRADGSALFEMG---------------------------- 42
Query: 65 SGDTKVLAAVYGPKAGTKKNE--NPEKASIEVIWKPRTGQIG----KPE-----KEYEII 113
+T+V+AAVYGP+ +++ N ++A + ++ G KP+ E ++
Sbjct: 43 --NTRVIAAVYGPREVQNRSQQVNSKEALVRCEYRMAEFSTGDRRRKPKGDRRSTEISLV 100
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
+++T+++ + + P++ + +QV+ DG INAA AL DAGIPM+ + +
Sbjct: 101 IRQTMEASILTHLMPHSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDI---VTS 157
Query: 174 CSAESGYCILDP 185
CSA GY P
Sbjct: 158 CSA--GYLCSSP 167
>gi|18977940|ref|NP_579297.1| exosome complex exonuclease Rrp41 [Pyrococcus furiosus DSM 3638]
gi|397652061|ref|YP_006492642.1| exosome complex exonuclease Rrp41 [Pyrococcus furiosus COM1]
gi|29336822|sp|Q8U0L9.1|ECX1_PYRFU RecName: Full=Probable exosome complex exonuclease 1
gi|18893710|gb|AAL81692.1| ribonuclease ph (rph) [Pyrococcus furiosus DSM 3638]
gi|393189652|gb|AFN04350.1| exosome complex exonuclease Rrp41 [Pyrococcus furiosus COM1]
Length = 250
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 83/195 (42%), Gaps = 40/195 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +LRP+ +L A+GSA + W
Sbjct: 17 RLDGRKKYELRPIKMKVGVLKNANGSA---------------------------YIEW-- 47
Query: 65 SGDTKVLAAVYGPKAGTKKN-ENPEKASIEVIWK------PRTGQIGKPEKEYEI--ILK 115
G K++AAVYGP+ K+ + P++A + V + + G + EI +++
Sbjct: 48 -GKNKIIAAVYGPREIHPKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSIEISKVIR 106
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
L+ IL + P T V I+V+ D I AA AL DAGIPM+ L VA C
Sbjct: 107 GALEPALILEMFPRTAIDVFIEVLQADAGTRVAGITAASLALADAGIPMRDL-VAACSAG 165
Query: 176 AESGYCILDPTKLEE 190
G +LD K E+
Sbjct: 166 KIEGEIVLDLNKEED 180
>gi|242088177|ref|XP_002439921.1| hypothetical protein SORBIDRAFT_09g022550 [Sorghum bicolor]
gi|241945206|gb|EES18351.1| hypothetical protein SORBIDRAFT_09g022550 [Sorghum bicolor]
Length = 242
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 90/201 (44%), Gaps = 50/201 (24%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR PN++R L ++ RA GSA + G
Sbjct: 11 RVDGRRPNEMRQLKGEVGVVARADGSALFEMG---------------------------- 42
Query: 65 SGDTKVLAAVYGPKAGTKKNE--NPEKASIEVIWKPRTGQIG----KPE-----KEYEII 113
+T+V+AAVYGP+ K + N +A + ++ G KP+ E ++
Sbjct: 43 --NTRVIAAVYGPREVQNKGQQVNSNEALVRCEYRMAEFSTGDRRRKPKGDRRSTEISLV 100
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
+++T+++ + + P + + +QV+ DG INAA AL DAGIPM+ + +
Sbjct: 101 IRQTMEASILTHLMPRSQIDIYVQVLQADGGTRSACINAATLALADAGIPMRDI---VTS 157
Query: 174 CSAESGYC----ILDPTKLEE 190
CSA GY +LD LE+
Sbjct: 158 CSA--GYLCSTPLLDLNYLED 176
>gi|440904353|gb|ELR54878.1| Exosome complex exonuclease RRP41 [Bos grunniens mutus]
Length = 244
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 87/198 (43%), Gaps = 45/198 (22%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +LR + + +A GSA ++
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSA------------------------------YIE 42
Query: 65 SGDTKVLAAVYGP-KAGTKKNENPEKASIEVIWKPRTGQIGKPEK---------EYEIIL 114
G+TK LA VYGP +A ++ P++A + + T G+ ++ E + L
Sbjct: 43 QGNTKALAVVYGPHEASSRARALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQL 102
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
++T ++ + ++P + + +QV+ DG +NAA A++DAGIPM+ +C C
Sbjct: 103 RQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDF---VCAC 159
Query: 175 SAE--SGYCILDPTKLEE 190
SA G + D + +EE
Sbjct: 160 SAGFVDGTALADLSHVEE 177
>gi|198427597|ref|XP_002131069.1| PREDICTED: similar to LOC495942 protein [Ciona intestinalis]
Length = 247
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 62/258 (24%), Positives = 109/258 (42%), Gaps = 56/258 (21%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P++LR + C+ + +A GSA ++
Sbjct: 13 RFDGRKPSELRRVRCNMGVFTQADGSA------------------------------YIE 42
Query: 65 SGDTKVLAAVYGPKAGTKK------------NENPEKASIEVIWKPRTGQIGKPEKEYEI 112
G+TKVLAA+YGP + N +A + + + + K+
Sbjct: 43 QGNTKVLAAIYGPHEASNNMRSRVCLDKCFINCEFSQAMFSSAERKKRSRGDRKGKDMSA 102
Query: 113 ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAIC 172
+K+T ++ + P + + +QV+H DG+L +NAA AL+DAGI MK +C
Sbjct: 103 HIKQTFEAAVRTQLYPRSQIDIYLQVLHSDGSLYCACVNAATLALIDAGIAMKDY---VC 159
Query: 173 CCSAE--SGYCILDPTKLEEQKMKG---FAYLVFPNSILSVLPEGSSLVQGEPMEHGIIT 227
CSA ++D +EE + G F+ + P + E + + + + ++
Sbjct: 160 ACSASLTKETSLIDINHVEE--LAGCAEFSAAIMPKLDQIIYSELNGRIHQDELGQ-LVD 216
Query: 228 SVTHGAMSVDDYFHCLER 245
+VT+G D F ++R
Sbjct: 217 AVTNG---CKDIFAVIDR 231
>gi|15920655|ref|NP_376324.1| exosome complex exonuclease Rrp41 [Sulfolobus tokodaii str. 7]
Length = 247
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 83/189 (43%), Gaps = 40/189 (21%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P+++RP+ +L A GSA + G
Sbjct: 20 RLDGRKPDEMRPIKIELGVLKNADGSAIFEMG---------------------------- 51
Query: 65 SGDTKVLAAVYGPKAGTKKN-ENPEKASIEVIW--------KPRTGQIGKPEKEYEIILK 115
+TKV+AAVYGPK ++ P++A + V + + + + E E +++
Sbjct: 52 --NTKVIAAVYGPKEMHPRHLALPDRAVLRVRYHMTPFSTDERKNPAPSRREIELSKVIR 109
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
L+S ++ + P T V ++V+ D ++ AA AL DAGIPM+ L +
Sbjct: 110 EALESTILVELFPRTVIDVFMEVLQADAGTRLVSLMAASMALADAGIPMRDLIAGVAVGK 169
Query: 176 AESGYCILD 184
A+ G +LD
Sbjct: 170 AD-GVLVLD 177
>gi|20093819|ref|NP_613666.1| exosome complex exonuclease Rrp41 [Methanopyrus kandleri AV19]
gi|29336819|sp|Q8TYC1.1|ECX1_METKA RecName: Full=Probable exosome complex exonuclease 1
gi|19886742|gb|AAM01596.1| Predicted exosome subunit, RNase PH [Methanopyrus kandleri AV19]
Length = 239
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 105/273 (38%), Gaps = 57/273 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P+++RPL +L RA GSA ++
Sbjct: 15 RLDGRKPDEMRPLKIQAGVLKRADGSA------------------------------YLE 44
Query: 65 SGDTKVLAAVYGPKA-GTKKNENPEKASIEVIWK------PRTGQIGKPEKEYEI--ILK 115
G K++AAVYGP+ + + P++A + + + G + EI + K
Sbjct: 45 LGANKIVAAVYGPRELHPRHKQKPDRAVVRFRYNMAPFSVDERKRPGPDRRSIEISKLSK 104
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
L+ P T + ++V+ D I+AA AL DAGI M+ L VA C
Sbjct: 105 EALEPAIFTEYYPRTAIDIFVEVLQADAGTRCAGISAASVALADAGIEMRDL-VAACAAG 163
Query: 176 AESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMS 235
G +LDP E+ G+ P +++ P E I G M+
Sbjct: 164 KVEGKVVLDPMYYED----GYGEADVPLAMM-------------PKEGKITLLQMDGDMT 206
Query: 236 VDDYFHCLERGRAASAKLSDFLRRSLQSKLPGD 268
++ ++ + + RR+L+ K GD
Sbjct: 207 PGEFKQAVKLAKKGCKIVYKEQRRALKEKYGGD 239
>gi|363548435|sp|Q975G8.2|ECX1_SULTO RecName: Full=Probable exosome complex exonuclease 1
gi|342306198|dbj|BAK54287.1| exosome core subunit Rrp41 [Sulfolobus tokodaii str. 7]
Length = 243
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 83/189 (43%), Gaps = 40/189 (21%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P+++RP+ +L A GSA + G
Sbjct: 16 RLDGRKPDEMRPIKIELGVLKNADGSAIFEMG---------------------------- 47
Query: 65 SGDTKVLAAVYGPKAGTKKN-ENPEKASIEVIW--------KPRTGQIGKPEKEYEIILK 115
+TKV+AAVYGPK ++ P++A + V + + + + E E +++
Sbjct: 48 --NTKVIAAVYGPKEMHPRHLALPDRAVLRVRYHMTPFSTDERKNPAPSRREIELSKVIR 105
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
L+S ++ + P T V ++V+ D ++ AA AL DAGIPM+ L +
Sbjct: 106 EALESTILVELFPRTVIDVFMEVLQADAGTRLVSLMAASMALADAGIPMRDLIAGVAVGK 165
Query: 176 AESGYCILD 184
A+ G +LD
Sbjct: 166 AD-GVLVLD 173
>gi|91772267|ref|YP_564959.1| exosome complex exonuclease Rrp41 [Methanococcoides burtonii DSM
6242]
gi|91711282|gb|ABE51209.1| Archaeal exosome complex RNA-binding protein [Methanococcoides
burtonii DSM 6242]
Length = 343
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 84/202 (41%), Gaps = 54/202 (26%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +++RP+ +L RA GS CY W
Sbjct: 15 RLDGRRVDEIRPMTVEMGVLSRADGS--------------------------CYL-EW-- 45
Query: 65 SGDTKVLAAVYGPKA-GTKKNENPEKA-----------SIEVIWKP----RTGQIGKPEK 108
G+ KVLAAVYGP+ ++ + P +A S+E +P R+ +I K
Sbjct: 46 -GNNKVLAAVYGPRELHPRRLQRPSEALVRYRYNMAAFSVEDRIRPGPSRRSTEISK--- 101
Query: 109 EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLA 168
+ +++ + P V +V+ D AINAA ALVDAGIPMK L
Sbjct: 102 ----VSGEAFETVVMKQFYPGAVIDVFAEVLQADAGTRTAAINAATLALVDAGIPMKGL- 156
Query: 169 VAICCCSAESGYCILDPTKLEE 190
VA C G ++D K E+
Sbjct: 157 VAACAVGKVDGQLVIDLNKPED 178
>gi|194215186|ref|XP_001917049.1| PREDICTED: LOW QUALITY PROTEIN: exosome complex component
RRP41-like [Equus caballus]
Length = 245
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 86/199 (43%), Gaps = 46/199 (23%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +LR + + +A GSA ++
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSA------------------------------YIE 42
Query: 65 SGDTKVLAAVYGPKA--GTKKNENPEKASIEVIWKPRTGQIGKPEK---------EYEII 113
G+TK LA VYGP G++ P++A + + T G+ ++ E +
Sbjct: 43 QGNTKALAVVYGPHEIRGSRARALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQ 102
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
L++T ++ + ++P + + +QV+ DG +NAA A++DAGIPM+ +C
Sbjct: 103 LRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNAATLAVMDAGIPMRDF---VCA 159
Query: 174 CSAE--SGYCILDPTKLEE 190
CSA G + D + +EE
Sbjct: 160 CSAGFVDGTALADLSHVEE 178
>gi|312137048|ref|YP_004004385.1| ribosomal RNA-processing protein rrp41/ski6 [Methanothermus
fervidus DSM 2088]
gi|311224767|gb|ADP77623.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanothermus
fervidus DSM 2088]
Length = 236
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 71/253 (28%), Positives = 111/253 (43%), Gaps = 54/253 (21%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFC 60
+E R DGR N+LRP+ +L RA GS+
Sbjct: 8 VEFVRKDGRAYNELRPVKIKAGVLKRADGSS----------------------------- 38
Query: 61 YWVGSGDTKVLAAVYGPK-AGTKKNENPEKASIE---------VIWKPRTGQIGKPEKEY 110
++ G K+LAAVYGP+ K + P++A I V + R G P++
Sbjct: 39 -YIELGSNKILAAVYGPRDPQITKIKRPDRAIIRCRYNMAPFSVEERKRPG----PDRRS 93
Query: 111 EIILKRTLQSIC---ILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHL 167
I K T +++ IL P ++ + I+V+ DG I AA AL DAGIP++ L
Sbjct: 94 IEISKITAEALAPSIILEKFPRSSIDIFIEVLEADGGTRCAGITAASVALADAGIPLRDL 153
Query: 168 AVAICCCSAESGYCILDPTKLEEQKMKGFAYL---VFPNSILSVLPEGSSLVQGEPMEHG 224
VA C +G+ +LD T EE+ +G A + + P + L + + E +E
Sbjct: 154 VVA-CSAGKVNGHVVLDLT--EEEDKEGEADVPVAIMPRTKEITLLQVDGELTPEELEKA 210
Query: 225 IITSVTHGAMSVD 237
I ++ G MS++
Sbjct: 211 IDLAI-EGCMSIN 222
>gi|9506689|ref|NP_061910.1| exosome complex component RRP41 [Homo sapiens]
gi|386780762|ref|NP_001248033.1| exosome component 4 [Macaca mulatta]
gi|114622153|ref|XP_001154573.1| PREDICTED: exosome complex component RRP41 isoform 1 [Pan
troglodytes]
gi|332264376|ref|XP_003281213.1| PREDICTED: exosome complex component RRP41 isoform 1 [Nomascus
leucogenys]
gi|397497366|ref|XP_003819483.1| PREDICTED: exosome complex component RRP41 [Pan paniscus]
gi|402912472|ref|XP_003918788.1| PREDICTED: exosome complex component RRP41 [Papio anubis]
gi|410042315|ref|XP_003951415.1| PREDICTED: exosome complex component RRP41 isoform 2 [Pan
troglodytes]
gi|410042317|ref|XP_003951416.1| PREDICTED: exosome complex component RRP41 isoform 3 [Pan
troglodytes]
gi|426360983|ref|XP_004047707.1| PREDICTED: exosome complex component RRP41-like [Gorilla gorilla
gorilla]
gi|426360993|ref|XP_004047712.1| PREDICTED: exosome complex component RRP41 [Gorilla gorilla
gorilla]
gi|441648333|ref|XP_004090877.1| PREDICTED: exosome complex component RRP41 isoform 2 [Nomascus
leucogenys]
gi|14285756|sp|Q9NPD3.3|EXOS4_HUMAN RecName: Full=Exosome complex component RRP41; AltName:
Full=Exosome component 4; AltName: Full=Ribosomal
RNA-processing protein 41; AltName: Full=p12A
gi|8927590|gb|AAF82134.1|AF281133_1 exosome component Rrp41 [Homo sapiens]
gi|7020801|dbj|BAA91279.1| unnamed protein product [Homo sapiens]
gi|12803867|gb|AAH02777.1| Exosome component 4 [Homo sapiens]
gi|119602572|gb|EAW82166.1| exosome component 4 [Homo sapiens]
gi|261860724|dbj|BAI46884.1| exosome component 4 [synthetic construct]
gi|325464127|gb|ADZ15834.1| exosome component 4 [synthetic construct]
gi|380785703|gb|AFE64727.1| exosome complex component RRP41 [Macaca mulatta]
gi|383414799|gb|AFH30613.1| exosome complex component RRP41 [Macaca mulatta]
gi|384943268|gb|AFI35239.1| exosome complex component RRP41 [Macaca mulatta]
gi|410250230|gb|JAA13082.1| exosome component 4 [Pan troglodytes]
gi|410290294|gb|JAA23747.1| exosome component 4 [Pan troglodytes]
gi|410331253|gb|JAA34573.1| exosome component 4 [Pan troglodytes]
Length = 245
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 86/199 (43%), Gaps = 46/199 (23%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +LR + + +A GSA ++
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSA------------------------------YIE 42
Query: 65 SGDTKVLAAVYGPKA--GTKKNENPEKASIEVIWKPRTGQIGKPEK---------EYEII 113
G+TK LA VYGP G++ P++A + + T G+ ++ E +
Sbjct: 43 QGNTKALAVVYGPHEIRGSRARALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQ 102
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
L++T ++ + ++P + + +QV+ DG +NAA A++DAGIPM+ +C
Sbjct: 103 LRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDF---VCA 159
Query: 174 CSAE--SGYCILDPTKLEE 190
CSA G + D + +EE
Sbjct: 160 CSAGFVDGTALADLSHVEE 178
>gi|75045923|sp|Q7YRA3.3|EXOS4_BOVIN RecName: Full=Exosome complex component RRP41; AltName:
Full=Exosome component 4; AltName: Full=Ribosomal
RNA-processing protein 41
gi|33411774|emb|CAD58792.1| putative exosome complex exonuclease RRP41 [Bos taurus]
gi|296480766|tpg|DAA22881.1| TPA: exosome complex exonuclease RRP41 [Bos taurus]
Length = 245
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 86/199 (43%), Gaps = 46/199 (23%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +LR + + +A GSA ++
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSA------------------------------YIE 42
Query: 65 SGDTKVLAAVYGPKA--GTKKNENPEKASIEVIWKPRTGQIGKPEK---------EYEII 113
G+TK LA VYGP G++ P++A + + T G+ ++ E +
Sbjct: 43 QGNTKALAVVYGPHEIRGSRARALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQ 102
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
L++T ++ + ++P + + +QV+ DG +NAA A++DAGIPM+ +C
Sbjct: 103 LRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDF---VCA 159
Query: 174 CSAE--SGYCILDPTKLEE 190
CSA G + D + +EE
Sbjct: 160 CSAGFVDGTALADLSHVEE 178
>gi|348555838|ref|XP_003463730.1| PREDICTED: exosome complex component RRP41-like [Cavia porcellus]
Length = 245
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 86/199 (43%), Gaps = 46/199 (23%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +LR + + +A GSA ++
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSA------------------------------YIE 42
Query: 65 SGDTKVLAAVYGPKA--GTKKNENPEKASIEVIWKPRTGQIGKPEK---------EYEII 113
G+TK LA VYGP G++ P++A + + T G+ ++ E +
Sbjct: 43 QGNTKALAVVYGPHEIRGSRSRALPDRALVNCQYSSATFSTGERKRRAHGDRKSCEMGLQ 102
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
L++T ++ + ++P + + +QV+ DG +NAA A++DAGIPM+ +C
Sbjct: 103 LRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDF---VCA 159
Query: 174 CSAE--SGYCILDPTKLEE 190
CSA G + D + +EE
Sbjct: 160 CSAGFVDGTALADLSHVEE 178
>gi|296227067|ref|XP_002759197.1| PREDICTED: exosome complex component RRP41 [Callithrix jacchus]
Length = 245
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 86/199 (43%), Gaps = 46/199 (23%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +LR + + +A GSA ++
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSA------------------------------YIE 42
Query: 65 SGDTKVLAAVYGPKA--GTKKNENPEKASIEVIWKPRTGQIGKPEK---------EYEII 113
G+TK LA VYGP G++ P++A + + T G+ ++ E +
Sbjct: 43 QGNTKALAVVYGPHEIRGSRARALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQ 102
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
L++T ++ + ++P + + +QV+ DG +NAA A++DAGIPM+ +C
Sbjct: 103 LRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDF---VCA 159
Query: 174 CSAE--SGYCILDPTKLEE 190
CSA G + D + +EE
Sbjct: 160 CSAGFVDGTALADLSHVEE 178
>gi|395860170|ref|XP_003802388.1| PREDICTED: exosome complex component RRP41 [Otolemur garnettii]
Length = 245
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 86/199 (43%), Gaps = 46/199 (23%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +LR + + +A GSA ++
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSA------------------------------YIE 42
Query: 65 SGDTKVLAAVYGPKA--GTKKNENPEKASIEVIWKPRTGQIGKPEK---------EYEII 113
G+TK LA VYGP G++ P++A + + T G+ ++ E +
Sbjct: 43 QGNTKALAVVYGPHEIRGSRARALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQ 102
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
L++T ++ + ++P + + +QV+ DG +NAA A++DAGIPM+ +C
Sbjct: 103 LRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDF---VCA 159
Query: 174 CSAE--SGYCILDPTKLEE 190
CSA G + D + +EE
Sbjct: 160 CSAGFVDGTALADLSHVEE 178
>gi|67623169|ref|XP_667867.1| hypothetical protein [Cryptosporidium hominis TU502]
gi|54659037|gb|EAL37636.1| hypothetical protein Chro.40220 [Cryptosporidium hominis]
Length = 239
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 87/197 (44%), Gaps = 40/197 (20%)
Query: 3 VDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYW 62
V R DGR + ++ + I + +GSA +S G
Sbjct: 2 VIRYDGRTNLECGAISANVGIFNSLNGSAEFSIGL------------------------- 36
Query: 63 VGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSIC 122
+KV+A V+ P+ + N K+ +EVI +PR GQ + K E + R + +
Sbjct: 37 -----SKVIATVWRPEEASS---NKCKSYLEVILRPRIGQPQESHKLIEYHILRLFEKVI 88
Query: 123 ILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGY-- 180
S+ +Q+V +DG +LP INAA AL+D+GIPM+ +AI + Y
Sbjct: 89 DFNSFSRCVISITLQIVSEDGPILPVCINAAVLALIDSGIPMEFFPLAISIAESSHFYGE 148
Query: 181 -----CILDPTKLEEQK 192
+LDPT+ E ++
Sbjct: 149 RDISHLMLDPTQSEFEQ 165
>gi|417397757|gb|JAA45912.1| Putative exosome complex component rrp41 [Desmodus rotundus]
Length = 245
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 86/199 (43%), Gaps = 46/199 (23%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +LR + + +A GSA ++
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSA------------------------------YIE 42
Query: 65 SGDTKVLAAVYGPKA--GTKKNENPEKASIEVIWKPRTGQIGKPEK---------EYEII 113
G+TK LA VYGP G++ P++A + + T G+ ++ E +
Sbjct: 43 QGNTKALAVVYGPHEIRGSRARALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQ 102
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
L++T ++ + ++P + + +QV+ DG +NAA A++DAGIPM+ +C
Sbjct: 103 LRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDF---VCA 159
Query: 174 CSAE--SGYCILDPTKLEE 190
CSA G + D + +EE
Sbjct: 160 CSAGFVDGTALADLSHVEE 178
>gi|432328765|ref|YP_007246909.1| archaeal exosome-like complex exonuclease 1 [Aciduliprofundum sp.
MAR08-339]
gi|432135474|gb|AGB04743.1| archaeal exosome-like complex exonuclease 1 [Aciduliprofundum sp.
MAR08-339]
Length = 246
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 99/253 (39%), Gaps = 52/253 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR PNQLRP+ +L RA GSA + W
Sbjct: 16 RIDGRLPNQLRPIKMEVGVLERADGSA---------------------------YIEW-- 46
Query: 65 SGDTKVLAAVYGP-KAGTKKNENPEKASIEVIW---------KPRTGQIGKPEK---EYE 111
G K++AAVYGP +A K + ++A + + + R G P++ E
Sbjct: 47 -GGNKIMAAVYGPHEAYPKHVQEADRAIVRARYSMAPFSVDERKRPG----PDRRSIELS 101
Query: 112 IILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAI 171
++ L S+ + P T+ V I+V+ D I A AL DAGIPM+ L V
Sbjct: 102 KVISEALTSVIFVEKYPRTSIDVYIEVLQADAGTRVAGITVASLALADAGIPMRDLIVG- 160
Query: 172 CCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTH 231
C +LD K E+ + P +IL E + L + + +T+
Sbjct: 161 CAAGKVDDVVVLDLNKEEDN----YGQADVPMAILPRTGEIALLQMDGDLTYEELTTAME 216
Query: 232 GAMSVDDYFHCLE 244
AM H ++
Sbjct: 217 MAMDAAKKIHEMQ 229
>gi|218201746|gb|EEC84173.1| hypothetical protein OsI_30553 [Oryza sativa Indica Group]
gi|222641142|gb|EEE69274.1| hypothetical protein OsJ_28540 [Oryza sativa Japonica Group]
Length = 242
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 90/201 (44%), Gaps = 50/201 (24%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR PN++R L ++ RA GSA + G
Sbjct: 11 RVDGRRPNEMRQLKGEVGVVARADGSALFEMG---------------------------- 42
Query: 65 SGDTKVLAAVYGPKAGTKKNE--NPEKASIEVIWKPRTGQIG----KPE-----KEYEII 113
+T+V+AAVYGP+ K + N + A + ++ G KP+ E ++
Sbjct: 43 --NTRVIAAVYGPREVQNKGQQVNSKDALVRCEYRMADFSTGDRRRKPKGDRRSTEISLV 100
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
+++T+++ + + P + + +QV+ DG INAA AL DAGIPM+ + +
Sbjct: 101 IRQTMEASILTHLMPRSQIDIFVQVLQADGGTRAACINAATLALADAGIPMRDI---VTS 157
Query: 174 CSAESGYC----ILDPTKLEE 190
CSA GY +LD +E+
Sbjct: 158 CSA--GYLCSTPLLDLNYIED 176
>gi|29611663|ref|NP_780608.1| exosome complex component RRP41 [Mus musculus]
gi|21759405|sp|Q921I9.3|EXOS4_MOUSE RecName: Full=Exosome complex component RRP41; AltName:
Full=Exosome component 4; AltName: Full=Ribosomal
RNA-processing protein 41
gi|15126706|gb|AAH12277.1| Exosome component 4 [Mus musculus]
gi|26354721|dbj|BAC40987.1| unnamed protein product [Mus musculus]
gi|74184267|dbj|BAE25679.1| unnamed protein product [Mus musculus]
gi|74198393|dbj|BAE39680.1| unnamed protein product [Mus musculus]
Length = 245
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 86/199 (43%), Gaps = 46/199 (23%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +LR + + +A GSA ++
Sbjct: 13 RIDGRRAGELRKIQARMGVFAQADGSA------------------------------YIE 42
Query: 65 SGDTKVLAAVYGPKA--GTKKNENPEKASIEVIWKPRTGQIGKPEK---------EYEII 113
G+TK LA VYGP G++ P++A + + T G+ ++ E +
Sbjct: 43 QGNTKALAVVYGPHEIRGSRSRALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQ 102
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
L++T ++ + ++P + + +QV+ DG +NAA A++DAGIPM+ +C
Sbjct: 103 LRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNAATLAVMDAGIPMRDF---VCA 159
Query: 174 CSAE--SGYCILDPTKLEE 190
CSA G + D + +EE
Sbjct: 160 CSAGFVDGTALADLSHVEE 178
>gi|330803994|ref|XP_003289985.1| hypothetical protein DICPUDRAFT_88747 [Dictyostelium purpureum]
gi|325079933|gb|EGC33511.1| hypothetical protein DICPUDRAFT_88747 [Dictyostelium purpureum]
Length = 247
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 97/219 (44%), Gaps = 50/219 (22%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR N+LR + + +RA GSA + QG
Sbjct: 13 RIDGRRANELRRINIQMGVSNRADGSAYYEQG---------------------------- 44
Query: 65 SGDTKVLAAVYGPKAGTKKNENP-EKASIEVIW----------KPRTGQIG-KPEKEYEI 112
+TK++AAVYGP+ + ++ ++A ++ + KP+ G + E
Sbjct: 45 --NTKIIAAVYGPREISVSGQSIFDRAIVKCEFATSSFSTTERKPQQKTKGDRATTEISN 102
Query: 113 ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAIC 172
++K+ +S + P + ++ IQV+ DG L AINA+ AL+DAGI MK A+
Sbjct: 103 LVKQAFESTIQTHLYPRSQINIYIQVLQSDGGLKAAAINASTLALIDAGISMKDFVCAV- 161
Query: 173 CCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPE 211
S G +LD +EE+ P+ +LS+ P+
Sbjct: 162 STSCIDGVAVLDLNHIEERSGG-------PDCLLSIQPQ 193
>gi|198442889|ref|NP_001128332.1| exosome complex exonuclease RRP41 [Rattus norvegicus]
Length = 245
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 86/199 (43%), Gaps = 46/199 (23%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +LR + + +A GSA ++
Sbjct: 13 RIDGRRAGELRKIQARMGVFAQADGSA------------------------------YIE 42
Query: 65 SGDTKVLAAVYGPKA--GTKKNENPEKASIEVIWKPRTGQIGKPEK---------EYEII 113
G+TK LA VYGP G++ P++A + + T G+ ++ E +
Sbjct: 43 QGNTKALAVVYGPHEIRGSRSRALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQ 102
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
L++T ++ + ++P + + +QV+ DG +NAA A++DAGIPM+ +C
Sbjct: 103 LRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNAATLAVMDAGIPMRDF---VCA 159
Query: 174 CSAE--SGYCILDPTKLEE 190
CSA G + D + +EE
Sbjct: 160 CSAGFVDGTALADLSHVEE 178
>gi|50550057|ref|XP_502501.1| YALI0D06776p [Yarrowia lipolytica]
gi|49648369|emb|CAG80689.1| YALI0D06776p [Yarrowia lipolytica CLIB122]
Length = 287
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 70/141 (49%), Gaps = 10/141 (7%)
Query: 62 WVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVI---------WKPRTGQIGKPEKEYEI 112
+V G TKV+ V GP+ + ++A I V + + + K E I
Sbjct: 87 YVEWGHTKVVCTVDGPREPDNRQNTTDRAVISVNVNVASFSTETRIKRQRNDKRLAEMNI 146
Query: 113 ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAIC 172
++++ L+ + +NP T +V I V+ DG LLP INAAC A++DAG+P+ V+ C
Sbjct: 147 LIRQLLEEAVLTKLNPRTQIAVNITVIAQDGGLLPACINAACLAMIDAGVPLTDY-VSAC 205
Query: 173 CCSAESGYCILDPTKLEEQKM 193
S ++D LEEQ +
Sbjct: 206 SSGVYSNNALIDLNTLEEQDV 226
>gi|122920908|pdb|2NN6|B Chain B, Structure Of The Human Rna Exosome Composed Of Rrp41,
Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40
Length = 249
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 86/199 (43%), Gaps = 46/199 (23%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +LR + + +A GSA ++
Sbjct: 17 RVDGRRAGELRKIQARMGVFAQADGSA------------------------------YIE 46
Query: 65 SGDTKVLAAVYGPKA--GTKKNENPEKASIEVIWKPRTGQIGKPEK---------EYEII 113
G+TK LA VYGP G++ P++A + + T G+ ++ E +
Sbjct: 47 QGNTKALAVVYGPHEIRGSRARALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQ 106
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
L++T ++ + ++P + + +QV+ DG +NAA A++DAGIPM+ +C
Sbjct: 107 LRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDF---VCA 163
Query: 174 CSAE--SGYCILDPTKLEE 190
CSA G + D + +EE
Sbjct: 164 CSAGFVDGTALADLSHVEE 182
>gi|426235362|ref|XP_004011653.1| PREDICTED: exosome complex component RRP41 isoform 1 [Ovis aries]
gi|426235364|ref|XP_004011654.1| PREDICTED: exosome complex component RRP41 isoform 2 [Ovis aries]
Length = 245
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 86/199 (43%), Gaps = 46/199 (23%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +LR + + +A GSA ++
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSA------------------------------YIE 42
Query: 65 SGDTKVLAAVYGPKA--GTKKNENPEKASIEVIWKPRTGQIGKPEK---------EYEII 113
G+TK LA VYGP G++ P++A + + T G+ ++ E +
Sbjct: 43 QGNTKALAVVYGPHEIRGSRARALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLH 102
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
L++T ++ + ++P + + +QV+ DG +NAA A++DAGIPM+ +C
Sbjct: 103 LRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDF---VCA 159
Query: 174 CSAE--SGYCILDPTKLEE 190
CSA G + D + +EE
Sbjct: 160 CSAGFVDGTALADLSHVEE 178
>gi|402224488|gb|EJU04550.1| ribosomal protein S5 domain 2-like protein [Dacryopinax sp. DJM-731
SS1]
Length = 257
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 83/210 (39%), Gaps = 41/210 (19%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R+DGR P +LR + + A GSAS S G
Sbjct: 13 RSDGRRPLELRSFSAELTTHPSADGSASVSHGL--------------------------- 45
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEK---ASIEVIWKPRTGQIGKPEK-------EYEIIL 114
T+V A VYGP+ + + +IEV P G++ + E+ +
Sbjct: 46 ---TQVTACVYGPREAKNRAQTMHDRALVNIEVEVAPWAGEVRRQRTKGDRRTAEFAASV 102
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
K T + + T+ P + + I V+ DG LL INA ALVDAGIPM ++
Sbjct: 103 KATFEPVIQTTLYPRSEIDIHIHVLQLDGGLLQAGINATTLALVDAGIPMLDYVSSLSAG 162
Query: 175 SAESGYCILDPTKLEEQKMKGFAYLVFPNS 204
+ +LD T LEE + V P S
Sbjct: 163 LYHT-TAMLDLTNLEESDLPSVTVAVLPRS 191
>gi|313226557|emb|CBY21703.1| unnamed protein product [Oikopleura dioica]
Length = 216
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 85/201 (42%), Gaps = 45/201 (22%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR + R + + A GSA QG
Sbjct: 10 RFDGRRAAEFRKIQGRLGVFDHADGSAILQQG---------------------------- 41
Query: 65 SGDTKVLAAVYGPK---AGTKKNENPEKASIEVIW---------KPRTGQIGKPEKEYEI 112
+TKVLAAV+GP+ A + EK ++V + + R + K +E +
Sbjct: 42 --NTKVLAAVFGPRQPMASQHGAVSQEKCIVDVEYSRAAFASAERKRRARGDKKAQEISL 99
Query: 113 ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAIC 172
LK+T ++ + T+ P + S+ ++V+ DG +NAA AL+DAGIP++ + A+
Sbjct: 100 SLKKTFEATILTTLYPRSAISIFVEVLQADGGDYAVCVNAATLALIDAGIPIRDVCCAVS 159
Query: 173 CCSA---ESGYCILDPTKLEE 190
C A Y +LD EE
Sbjct: 160 CGVAIKDNVAYSLLDLAYSEE 180
>gi|344307537|ref|XP_003422437.1| PREDICTED: exosome complex component RRP41-like [Loxodonta
africana]
Length = 245
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 86/199 (43%), Gaps = 46/199 (23%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +LR + + +A GSA ++
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSA------------------------------YIE 42
Query: 65 SGDTKVLAAVYGPKA--GTKKNENPEKASIEVIWKPRTGQIGKPEK---------EYEII 113
G+TK LA VYGP G++ P++A + + T G+ ++ E +
Sbjct: 43 QGNTKALAVVYGPHEIRGSRARALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQ 102
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
L++T ++ + ++P + + +QV+ DG +NAA A++DAGIPM+ +C
Sbjct: 103 LRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNAATLAVMDAGIPMRDF---VCA 159
Query: 174 CSAE--SGYCILDPTKLEE 190
CSA G + D + +EE
Sbjct: 160 CSAGFVDGTALADLSHVEE 178
>gi|148697598|gb|EDL29545.1| exosome component 4, isoform CRA_b [Mus musculus]
Length = 271
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 86/199 (43%), Gaps = 46/199 (23%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +LR + + +A GSA ++
Sbjct: 39 RIDGRRAGELRKIQARMGVFAQADGSA------------------------------YIE 68
Query: 65 SGDTKVLAAVYGPKA--GTKKNENPEKASIEVIWKPRTGQIGKPEK---------EYEII 113
G+TK LA VYGP G++ P++A + + T G+ ++ E +
Sbjct: 69 QGNTKALAVVYGPHEIRGSRSRALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQ 128
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
L++T ++ + ++P + + +QV+ DG +NAA A++DAGIPM+ +C
Sbjct: 129 LRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNAATLAVMDAGIPMRDF---VCA 185
Query: 174 CSAE--SGYCILDPTKLEE 190
CSA G + D + +EE
Sbjct: 186 CSAGFVDGTALADLSHVEE 204
>gi|440802076|gb|ELR23015.1| 3' exoribonuclease family, domain 1 domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 274
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 97/226 (42%), Gaps = 48/226 (21%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFC 60
+E R DGR+P++ RP+ ++ +A GSA
Sbjct: 35 VEGKRLDGRSPDEFRPVFLKTGVISQAAGSA----------------------------- 65
Query: 61 YWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRT-GQIG--------KPEKEYE 111
++ TKV+ VYGP+ T K EK + +K T + G K EKE
Sbjct: 66 -YIEMNQTKVICGVYGPRQ-TPKTVYSEKGKLNCFFKLATFAENGERRKYVSDKEEKELS 123
Query: 112 IILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAI 171
+++ + L+ L P + V + V+ + G ++ AI AA AL DAGI M L VA
Sbjct: 124 MLMVQALEVSLRLETFPKSELDVFVLVLEESGGMVGAAITAASLALADAGIEMYDL-VAS 182
Query: 172 CCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQ 217
C + +LDP+ EE+ + N +++++P + + Q
Sbjct: 183 CSVGVVDSHILLDPSIAEEKAAQS-------NLMVAIMPSANEITQ 221
>gi|125773865|ref|XP_001358191.1| GA17911 [Drosophila pseudoobscura pseudoobscura]
gi|54637926|gb|EAL27328.1| GA17911 [Drosophila pseudoobscura pseudoobscura]
Length = 234
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 94/207 (45%), Gaps = 17/207 (8%)
Query: 55 SKCYFCYWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIIL 114
S+C G T V++AV GP +N + + + +E ++P+ G E+ E +
Sbjct: 26 SRCDGSVMYCQGATVVISAVLGPVEVKTQNLSIDGSYLECNYRPKAGLPQVKERIREAAV 85
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
+ L+ + P + S+ IQ + D G++ CA+N+AC A++ G+P+K A+ C
Sbjct: 86 RDVLELALLSEAYPRSKMSLQIQELEDRGSIDACALNSACLAMLIGGLPLKCSFAAVHCI 145
Query: 175 SAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAM 234
E G ILDP + E + + F + +E ++ T G+
Sbjct: 146 INEEGDYILDPDQRETENERASFTFAF-----------------DSLEGNLLLVQTKGSF 188
Query: 235 SVDDYFHCLERGRAASAKLSDFLRRSL 261
+ ++ R+ASA++ F R S+
Sbjct: 189 KIAEFNDVESLCRSASAEILQFYRTSI 215
>gi|194902325|ref|XP_001980673.1| GG17562 [Drosophila erecta]
gi|190652376|gb|EDV49631.1| GG17562 [Drosophila erecta]
Length = 226
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 92/206 (44%), Gaps = 21/206 (10%)
Query: 55 SKCYFCYWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIIL 114
S+C G T ++ AV GP +N + + + +E ++P+ G ++ E +
Sbjct: 19 SRCDGSVMYSQGATGLIGAVLGPIEVKTQNLSIDGSYLECNYRPKAGLPQVKDRIREAAI 78
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
+ L+ + +P + SV IQ + D G++ CA+N AC A++ G+PMK+ A+ C
Sbjct: 79 RDVLELALLAEAHPRSKMSVQIQELEDRGSIDACALNCACLAMLIGGLPMKYSFAAVHCI 138
Query: 175 SAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAM 234
E G +LDP + E + V + +E ++ T GA
Sbjct: 139 INEQGEYVLDPDQSETLHQRASFTFVL-----------------DSVEGNLLLVQTKGAF 181
Query: 235 SVDDY--FHCLERGRAASAKLSDFLR 258
+ + CL RAASA++ F R
Sbjct: 182 KIAQFNDIECL--CRAASAEIFQFYR 205
>gi|270010551|gb|EFA06999.1| hypothetical protein TcasGA2_TC009968 [Tribolium castaneum]
Length = 251
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 81/197 (41%), Gaps = 41/197 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR ++LR + C + GSA QG
Sbjct: 14 RQDGRRADELRRIRCKLGVFTEPDGSAYLEQGL--------------------------- 46
Query: 65 SGDTKVLAAVYGPKA--GTKKNENPEKASIEVIWKPRTGQIGKPEK---------EYEII 113
TKVLAAVYGP G++ + A + + G+ +K E I
Sbjct: 47 ---TKVLAAVYGPHQVRGSRSKAQHDSAVVNCQFSMAVFSTGERKKRPRGDRKSTEISIH 103
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
L++ L + + + P T V ++V+H DG + P +NAA AL+DAGIP+K A
Sbjct: 104 LRQALTAAIKVELYPWTQIDVYVEVLHADGGIYPACVNAATLALIDAGIPLKEYVCACTA 163
Query: 174 CSAESGYCILDPTKLEE 190
A + +LD + EE
Sbjct: 164 SLANNDVPLLDVSHQEE 180
>gi|194761146|ref|XP_001962793.1| GF15621 [Drosophila ananassae]
gi|190616490|gb|EDV32014.1| GF15621 [Drosophila ananassae]
Length = 249
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 88/195 (45%), Gaps = 39/195 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P++LR + C + + GSA QG
Sbjct: 14 RLDGRRPHELRHIQCKLGVFEQPDGSAYMEQG---------------------------- 45
Query: 65 SGDTKVLAAVYGP-KAGTKKNENPE--------KASIEVIWKPRTGQIGKPEKEYEIILK 115
+TKVLAAVYGP +A KK E+ + +A+ + + + +E+++ L+
Sbjct: 46 --NTKVLAAVYGPHQAKGKKTESNDVIINCQYSQATFSTAERKNRPRGDRKSQEFKMYLQ 103
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
+ L + + P + V ++V+ DGA A+NAA AL+DAGI + L VA
Sbjct: 104 QALSAAIKSELYPRSQIDVYVEVLQADGANYAVALNAATLALIDAGICLNELIVACTASL 163
Query: 176 AESGYCILDPTKLEE 190
+++ + D + +EE
Sbjct: 164 SKNNIPLTDISHIEE 178
>gi|17946442|gb|AAL49254.1| RE67757p [Drosophila melanogaster]
Length = 246
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 36/192 (18%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P++LR + C + + GSA QG
Sbjct: 14 RLDGRRPHELRRIKCKLGVFEQPDGSAYMEQG---------------------------- 45
Query: 65 SGDTKVLAAVYGP-KAGTKKNENP-----EKASIEVIWKPRTGQIGKPEKEYEIILKRTL 118
+TKVLAAVYGP +A + E+ +A+ + + + E+++ L++ L
Sbjct: 46 --NTKVLAAVYGPHQAKGNQTESVINCQYSQATFSTAERKNRPRGDRKSLEFKLYLQQAL 103
Query: 119 QSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAES 178
+ + P + + ++V+ DDGA A+NAA AL+DAGI + VA ++S
Sbjct: 104 SAAIKSELYPRSQIDIYVEVLQDDGANYAVALNAATLALIDAGICLNEFIVACTASLSKS 163
Query: 179 GYCILDPTKLEE 190
+ D ++ EE
Sbjct: 164 NIPLTDISQFEE 175
>gi|24584046|ref|NP_609618.2| Ski6, isoform A [Drosophila melanogaster]
gi|442627738|ref|NP_001260437.1| Ski6, isoform B [Drosophila melanogaster]
gi|7298022|gb|AAF53263.1| Ski6, isoform A [Drosophila melanogaster]
gi|201065945|gb|ACH92382.1| FI07225p [Drosophila melanogaster]
gi|440213772|gb|AGB92972.1| Ski6, isoform B [Drosophila melanogaster]
Length = 246
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 36/192 (18%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P++LR + C + + GSA QG
Sbjct: 14 RLDGRRPHELRRIKCKLGVFEQPDGSAYMEQG---------------------------- 45
Query: 65 SGDTKVLAAVYGP-KAGTKKNENP-----EKASIEVIWKPRTGQIGKPEKEYEIILKRTL 118
+TKVLAAVYGP +A + E+ +A+ + + + E+++ L++ L
Sbjct: 46 --NTKVLAAVYGPHQAKGNQTESVINCQYSQATFSTAERKNRPRGDRKSLEFKLYLQQAL 103
Query: 119 QSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAES 178
+ + P + + ++V+ DDGA A+NAA AL+DAGI + VA ++S
Sbjct: 104 SAAIKSELYPRSQIDIYVEVLQDDGANYAVALNAATLALIDAGICLNEFIVACTASLSKS 163
Query: 179 GYCILDPTKLEE 190
+ D ++ EE
Sbjct: 164 NIPLTDISQFEE 175
>gi|354491158|ref|XP_003507723.1| PREDICTED: exosome complex component RRP41-like [Cricetulus
griseus]
Length = 245
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 86/199 (43%), Gaps = 46/199 (23%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +LR + + +A GSA ++
Sbjct: 13 RIDGRRAGELRKIQARMGVFAQADGSA------------------------------YIE 42
Query: 65 SGDTKVLAAVYGPKA--GTKKNENPEKASIEVIWKPRTGQIGKPEK---------EYEII 113
G+TK LA VYGP G++ P++A + + T G+ ++ E +
Sbjct: 43 QGNTKALAVVYGPHEIRGSRSRALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQ 102
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
L++T ++ + ++P + + +QV+ DG +NAA A++DAGIPM+ +C
Sbjct: 103 LRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNAATLAVMDAGIPMRDF---VCA 159
Query: 174 CSAE--SGYCILDPTKLEE 190
CSA G + D + +EE
Sbjct: 160 CSAGFVDGTALSDLSHVEE 178
>gi|313240640|emb|CBY32963.1| unnamed protein product [Oikopleura dioica]
Length = 216
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 85/201 (42%), Gaps = 45/201 (22%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR + R + + A GSA QG
Sbjct: 10 RFDGRRAAEFRKIQGRLGVFDHADGSAILQQG---------------------------- 41
Query: 65 SGDTKVLAAVYGPK---AGTKKNENPEKASIEVIW---------KPRTGQIGKPEKEYEI 112
+TKVLAAV+GP+ A + EK ++V + + R + K +E +
Sbjct: 42 --NTKVLAAVFGPRQPMASQHGAVSQEKCIVDVEYSRAAFASAERKRRARGDKKAQEISL 99
Query: 113 ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAIC 172
LK+T ++ + T+ P + S+ ++V+ DG +NAA AL+DAGIP++ + A+
Sbjct: 100 SLKKTFEATILTTLYPRSAISIFVEVLQADGGDYAVCVNAATLALIDAGIPIRDVCCAVS 159
Query: 173 CCSA---ESGYCILDPTKLEE 190
C A Y +LD EE
Sbjct: 160 CGVAIKDNVAYSLLDLAYSEE 180
>gi|195351217|ref|XP_002042132.1| GM25757 [Drosophila sechellia]
gi|194123956|gb|EDW45999.1| GM25757 [Drosophila sechellia]
Length = 246
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 36/192 (18%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P++LR + C + + GSA QG
Sbjct: 14 RLDGRRPHELRRIKCKLGVFEQPDGSAYMEQG---------------------------- 45
Query: 65 SGDTKVLAAVYGP-KAGTKKNENP-----EKASIEVIWKPRTGQIGKPEKEYEIILKRTL 118
+TKVLAAVYGP +A + E+ +A+ + + + E+++ L++ L
Sbjct: 46 --NTKVLAAVYGPHQAKGNQTESVINCQYSQATFSTAERKNRPRGDRKSLEFKMYLQQAL 103
Query: 119 QSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAES 178
+ + P + + ++V+ DDGA A+NAA AL+DAGI + VA ++S
Sbjct: 104 SAAIKSELYPRSQIDIYVEVLQDDGANYAVALNAATLALIDAGICLNEFIVACTASLSKS 163
Query: 179 GYCILDPTKLEE 190
+ D ++ EE
Sbjct: 164 NIPLTDISQFEE 175
>gi|195143763|ref|XP_002012867.1| GL23700 [Drosophila persimilis]
gi|194101810|gb|EDW23853.1| GL23700 [Drosophila persimilis]
Length = 234
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 94/207 (45%), Gaps = 17/207 (8%)
Query: 55 SKCYFCYWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIIL 114
S+C G T V++AV GP +N + + + +E ++P+ G E+ E +
Sbjct: 26 SRCDGSVMYCQGATVVISAVLGPIEVKTQNLSIDGSYLECNYRPKAGLPQVKERIREAAV 85
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
+ L+ + P + S+ IQ + D G++ CA+N+AC A++ G+P+K A+ C
Sbjct: 86 RDVLELALLSEAYPRSKMSLQIQELEDRGSIDACALNSACLAMLIGGLPLKCSFAAVHCI 145
Query: 175 SAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAM 234
E G ILDP + E + + F + +E ++ T G+
Sbjct: 146 INEQGEYILDPDQRETEHERASFTFAF-----------------DSLEGNLLLVQTKGSF 188
Query: 235 SVDDYFHCLERGRAASAKLSDFLRRSL 261
+ ++ R+ASA++ F R S+
Sbjct: 189 KIAEFNDVESLCRSASAEILQFYRTSI 215
>gi|242399326|ref|YP_002994750.1| Probable exosome complex exonuclease 1 [Thermococcus sibiricus MM
739]
gi|242265719|gb|ACS90401.1| Probable exosome complex exonuclease 1 [Thermococcus sibiricus MM
739]
Length = 246
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 82/195 (42%), Gaps = 40/195 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +LR + +L A GSA + W
Sbjct: 16 RVDGRKKYELRKIKMEVGVLKSADGSA---------------------------YVEW-- 46
Query: 65 SGDTKVLAAVYGPKAGTKKN-ENPEKASIEVIWK------PRTGQIGKPEKEYEI--ILK 115
G K++AAVYGP+ K+ + P++A + V + + G + EI +++
Sbjct: 47 -GKNKIMAAVYGPREIHPKHLQKPDRAILRVRYNMAPFSVEERKKPGPDRRSVEISKVIR 105
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
L+ IL + P T+ + I+V+ D I AA AL DAGIPMK L VA C
Sbjct: 106 GALEPAVILELFPRTSIDIFIEVLQADAGTRVAGITAASLALADAGIPMKDL-VAACAAG 164
Query: 176 AESGYCILDPTKLEE 190
G +LD K E+
Sbjct: 165 KIDGEIVLDLNKEED 179
>gi|119719494|ref|YP_919989.1| exosome complex exonuclease 1 [Thermofilum pendens Hrk 5]
gi|119524614|gb|ABL77986.1| ribosomal RNA-processing protein RRP41/SKI6 [Thermofilum pendens
Hrk 5]
Length = 245
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 83/196 (42%), Gaps = 40/196 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P+++RPL +L A GSA +V
Sbjct: 16 RVDGRLPDEMRPLRVEAGVLKNADGSA------------------------------YVE 45
Query: 65 SGDTKVLAAVYGPKAGTKKNEN-PEKASIE--------VIWKPRTGQIGKPEKEYEIILK 115
G+ KVLAAVYGP+ ++E P++A ++ + + ++ Q + E E +++
Sbjct: 46 LGNNKVLAAVYGPREPMPRHEALPDRAILKCRYSMLPFSVAERKSPQPSRREIELSKVIR 105
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
L L P T+ V I ++ DG +I A AL DAGI M+ L AI
Sbjct: 106 EALAPAVFLNEYPRTSIEVYIHILEADGGTRTASIIAGSVALADAGIAMRDLVAAIAVGK 165
Query: 176 AESGYCILDPTKLEEQ 191
+LD +E+Q
Sbjct: 166 I-GNVLVLDINGIEDQ 180
>gi|13541138|ref|NP_110826.1| exosome complex exonuclease Rrp41 [Thermoplasma volcanium GSS1]
gi|29336899|sp|Q97BZ5.1|ECX1_THEVO RecName: Full=Probable exosome complex exonuclease 1
gi|14324525|dbj|BAB59452.1| ribonuclease PH [Thermoplasma volcanium GSS1]
Length = 248
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/276 (24%), Positives = 105/276 (38%), Gaps = 71/276 (25%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR+ N+LRP+ +L+RA GSA + W
Sbjct: 18 RLDGRSFNELRPIKIEAGVLNRADGSA---------------------------YIEW-- 48
Query: 65 SGDTKVLAAVYGPK------------AGTKKNENPEKASIEVIWKP----RTGQIGKPEK 108
G K++ VYGPK A K N S++ +P RT +I K
Sbjct: 49 -GGNKIIVGVYGPKEAYPKHSQDIDHAVVKARYNMAAFSVDERKRPGPDRRTMEISK--- 104
Query: 109 EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLA 168
++ L S ++ P V I+V+ D + AA AL DAGIPM+ +
Sbjct: 105 ----VISEALSSSIMIEQFPRAEIDVYIEVLQADAGTRIAGLTAATVALADAGIPMRDMV 160
Query: 169 VAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITS 228
V C G+ +LD +K E+ F P +I+ P I+
Sbjct: 161 VG-CTAGKVDGHIVLDLSKEEDN----FGEADIPMAIM-------------PKTGEIVLL 202
Query: 229 VTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSK 264
G ++ D+++ A+ K+S R +L +K
Sbjct: 203 QMDGDVTEDEFYEATSMIIEATKKISQIQRNALLNK 238
>gi|355698284|gb|EHH28832.1| hypothetical protein EGK_19355 [Macaca mulatta]
Length = 247
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 86/201 (42%), Gaps = 48/201 (23%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +LR + + +A GSA ++
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSA------------------------------YIE 42
Query: 65 SGDTKVLAAVYGPKA----GTKKNENPEKASIEVIWKPRTGQIGKPEK---------EYE 111
G+TK LA VYGP G++ P++A + + T G+ ++ E
Sbjct: 43 QGNTKALAVVYGPHEASIRGSRARALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMG 102
Query: 112 IILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAI 171
+ L++T ++ + ++P + + +QV+ DG +NAA A++DAGIPM+ +
Sbjct: 103 LQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDF---V 159
Query: 172 CCCSAE--SGYCILDPTKLEE 190
C CSA G + D + +EE
Sbjct: 160 CACSAGFVDGTALADLSHVEE 180
>gi|355780009|gb|EHH64485.1| hypothetical protein EGM_17708 [Macaca fascicularis]
Length = 247
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 86/201 (42%), Gaps = 48/201 (23%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +LR + + +A GSA ++
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSA------------------------------YIE 42
Query: 65 SGDTKVLAAVYGPKA----GTKKNENPEKASIEVIWKPRTGQIGKPEK---------EYE 111
G+TK LA VYGP G++ P++A + + T G+ ++ E
Sbjct: 43 QGNTKALAVVYGPHEAXIRGSRARALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMG 102
Query: 112 IILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAI 171
+ L++T ++ + ++P + + +QV+ DG +NAA A++DAGIPM+ +
Sbjct: 103 LQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDF---V 159
Query: 172 CCCSAE--SGYCILDPTKLEE 190
C CSA G + D + +EE
Sbjct: 160 CACSAGFVDGTALADLSHVEE 180
>gi|333986695|ref|YP_004519302.1| exosome complex exonuclease 1 [Methanobacterium sp. SWAN-1]
gi|333824839|gb|AEG17501.1| exosome complex exonuclease 1 [Methanobacterium sp. SWAN-1]
Length = 242
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 86/202 (42%), Gaps = 50/202 (24%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
RADGR ++LRPL +L RA GSA +V
Sbjct: 19 RADGRAFDELRPLKIEAGVLERADGSA------------------------------YVE 48
Query: 65 SGDTKVLAAVYGPKA-GTKKNENPEKA-----------SIEVIWKPRTGQIGKPEKEYEI 112
G KVLAAVYGP+ ++ P KA S++ +P G + EI
Sbjct: 49 MGGNKVLAAVYGPRELHIRRIMMPNKAVLRCKYNMAPFSVDDRKRP-----GPDRRSVEI 103
Query: 113 --ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVA 170
I L L P +T V I+V+ +G I AA AL DAG+PM+ + VA
Sbjct: 104 SKITSEALTPAVFLEKFPRSTIDVFIEVLEAEGGTRCAGITAASVALADAGVPMRDIVVA 163
Query: 171 ICCCSAESGYCILDPTKLEEQK 192
C +G ++D +++E+++
Sbjct: 164 -CAAGKSNGQVVMDLSEVEDKE 184
>gi|66357222|ref|XP_625789.1| RPR46-like RNAse PH domain [Cryptosporidium parvum Iowa II]
gi|46226980|gb|EAK87946.1| RPR46-like RNAse PH domain [Cryptosporidium parvum Iowa II]
Length = 244
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 87/199 (43%), Gaps = 40/199 (20%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFC 60
+ V R DGR + ++ + I + +GSA +S G
Sbjct: 5 LMVIRYDGRTNLECGAISANVGIFNSLNGSAEFSIGL----------------------- 41
Query: 61 YWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQS 120
+KV+A V+ P+ + N K+ +EVI +PR GQ + K E + R +
Sbjct: 42 -------SKVIATVWRPEEASS---NKCKSYLEVILRPRIGQPQESHKLIEYHILRLFEK 91
Query: 121 ICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGY 180
+ S+ +Q+V +DG +LP INAA AL+D GIPM+ +A+ + Y
Sbjct: 92 VIDFNSFSRCVISITLQIVSEDGPILPVCINAAVLALIDLGIPMEFFPLAVSIAESSHFY 151
Query: 181 -------CILDPTKLEEQK 192
+LDPT+ E ++
Sbjct: 152 GERDISHLMLDPTQSEFEQ 170
>gi|357626143|gb|EHJ76339.1| putative exosome complex exonuclease RRP41 [Danaus plexippus]
Length = 214
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 83/201 (41%), Gaps = 48/201 (23%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR PN+LR + C + + GSA QG
Sbjct: 13 RLDGRRPNELRRIRCKLGVFTQPDGSAYLEQG---------------------------- 44
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIG---------KPEKEYEIILK 115
+TKVLAAVYGP +K + E + + T G + +E + L+
Sbjct: 45 --NTKVLAAVYGPHQASKSKSSAEGVVVNCQYSMATFSTGERKNRPRGDRKSQEMSMHLR 102
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
+ L + + P + + ++V+ DG ++NA+ AL+DAGIP+K +C CS
Sbjct: 103 QALTAAIKTEMYPRSQIDIYVEVLQADGGAYCASVNASTLALIDAGIPLKAY---VCSCS 159
Query: 176 AESGYC------ILDPTKLEE 190
A + +LD +EE
Sbjct: 160 ASMAWLDGVPEPLLDVGHVEE 180
>gi|156388129|ref|XP_001634554.1| predicted protein [Nematostella vectensis]
gi|156221638|gb|EDO42491.1| predicted protein [Nematostella vectensis]
Length = 247
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 95/222 (42%), Gaps = 48/222 (21%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR ++LR + C +L +A GSA ++
Sbjct: 13 RIDGRKASELRKMVCKVGVLSQADGSA------------------------------YIE 42
Query: 65 SGDTKVLAAVYGP-KAGTKKNENPEKASIEVIWKPRTGQIGKPEK---------EYEIIL 114
G+TK LA VYGP + K ++ + V + T G+ +K E +++
Sbjct: 43 MGNTKALATVYGPHEVQNKAKALHDRVLLNVQFGMATFSTGERKKKPRGDRKATELSMMV 102
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
+RT ++ ++ + P + + +QV+ DG INA AL++AGIP+K V+ C
Sbjct: 103 RRTFEAAILINLYPRSQIDIYVQVLQADGGNHVACINAVTLALINAGIPLKDY-VSACTV 161
Query: 175 SAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLV 216
S + ++D LEE P L++LP+ +V
Sbjct: 162 SFVNDTPLMDINYLEESTGG-------PQLTLAILPKSDKIV 196
>gi|195031196|ref|XP_001988306.1| GH10637 [Drosophila grimshawi]
gi|193904306|gb|EDW03173.1| GH10637 [Drosophila grimshawi]
Length = 249
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 87/195 (44%), Gaps = 39/195 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P++LR + C + + GSA QG
Sbjct: 14 RLDGRRPHELRHIKCKLGVFEQPDGSAYMEQG---------------------------- 45
Query: 65 SGDTKVLAAVYGP-KAGTKKNENPE--------KASIEVIWKPRTGQIGKPEKEYEIILK 115
+TKVLAAVYGP +A KK+E + +A+ + + + +E+++ L+
Sbjct: 46 --NTKVLAAVYGPHQAKAKKSEGNDLIINCQYSQATFSTAERKNRPRGDRKSQEFKMYLQ 103
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
+ L + + P + + ++V+ DGA ++NAA AL+DAGI + VA
Sbjct: 104 QALSAAIKSELYPRSQIDIYVEVLQADGANYAVSLNAATLALIDAGICLNEFVVACTASL 163
Query: 176 AESGYCILDPTKLEE 190
++S + D + +EE
Sbjct: 164 SKSNIPLTDISHIEE 178
>gi|170070082|ref|XP_001869459.1| exosome complex exonuclease RRP41 [Culex quinquefasciatus]
gi|167866003|gb|EDS29386.1| exosome complex exonuclease RRP41 [Culex quinquefasciatus]
Length = 245
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 87/212 (41%), Gaps = 45/212 (21%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR N+LR + C + + GSA +V
Sbjct: 10 RLDGRRSNELRRIQCKLGVFSQPDGSA------------------------------YVE 39
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEK---------EYEIILK 115
G+TKVLAAVYGP K N E+ + + T G+ +K E I L+
Sbjct: 40 QGNTKVLAAVYGPHQAPAKKSNHEECVVNCQYSMATFSTGERKKRPRGDRKSQEMTIHLQ 99
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
+ L + + P + V I+V+ DG ++NAA AL+DAGI +K A C S
Sbjct: 100 QALSAAIKTDLYPKSQIDVYIEVLMADGGNYCASVNAATLALIDAGICLKEYVCA-CTAS 158
Query: 176 AESGYCILDPTKLEEQKMKGFAYLV---FPNS 204
++D + LEE M G L PNS
Sbjct: 159 LAGKVPLMDVSNLEE--MSGGPTLTVASLPNS 188
>gi|327310389|ref|YP_004337286.1| exosome complex exonuclease Rrp41 [Thermoproteus uzoniensis 768-20]
gi|326946868|gb|AEA11974.1| exosome complex exonuclease Rrp41 [Thermoproteus uzoniensis 768-20]
Length = 245
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 89/205 (43%), Gaps = 41/205 (20%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFC 60
+E RADGR P+Q+R + S ++ A GSA
Sbjct: 10 VEGRRADGRTPDQMREVKISVGVISNADGSA----------------------------- 40
Query: 61 YWVGSGDTKVLAAVYGPKAGTKKNEN-PEKASIEVIW-------KPRTGQIGKPEKEYEI 112
V G+T +AAVYGP+ ++ + P++A + V + + +E EI
Sbjct: 41 -MVSYGNTTAVAAVYGPREMHPRHLSLPDRAVMRVRYHMAPFSTRDERKNPAPSRREIEI 99
Query: 113 --ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVA 170
+L+ L+ L P + V +++V DG+ ++ AA AL DAG+PM+ L +
Sbjct: 100 SKVLREALEPAIFLEQFPRSRIDVFVEIVQADGSTRVASLTAASLALADAGVPMRDLVIG 159
Query: 171 ICCCSAESGYCILDPTKLEEQKMKG 195
+ +G +LD LE+ +G
Sbjct: 160 VSVGLV-NGTVVLDLNGLEDNYGEG 183
>gi|126322962|ref|XP_001364428.1| PREDICTED: exosome complex component RRP41-like [Monodelphis
domestica]
Length = 245
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 92/224 (41%), Gaps = 53/224 (23%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +LR + + +A GSA ++
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSA------------------------------YIE 42
Query: 65 SGDTKVLAAVYGPKA--GTKKNENPEKASIEVIWKPRTGQIGKPEK---------EYEII 113
G+TK LA VYGP G++ P++A + + T G+ ++ E +
Sbjct: 43 QGNTKALAVVYGPHEMRGSRSRALPDRALVNCQYSMATFSTGERKRRPHGDRKACEMGLQ 102
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
L++T ++ + + P + + +QV+ DG +NAA A++DAGIPM+ +C
Sbjct: 103 LRQTFEAAILTQLYPRSQIDIYVQVLQADGGNYAACVNAATLAVLDAGIPMRDF---VCA 159
Query: 174 CSAE--SGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSL 215
CSA G + D + +EE P L++LP L
Sbjct: 160 CSAGFVDGTALADLSHVEEAAGG-------PQLALALLPASGQL 196
>gi|449451735|ref|XP_004143616.1| PREDICTED: exosome complex component RRP41-like [Cucumis sativus]
gi|449516461|ref|XP_004165265.1| PREDICTED: exosome complex component RRP41-like [Cucumis sativus]
Length = 241
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 90/204 (44%), Gaps = 57/204 (27%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P +LR + + +A+GSA + G
Sbjct: 10 RQDGRRPRELREMRAEIGAVSKANGSAVFEMG---------------------------- 41
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASI-------------EVIWKPRTGQIGKPEKEYE 111
+TKVLAAVYGP+ K++ ++ + + KP+ + E
Sbjct: 42 --NTKVLAAVYGPREVQNKSQQMSNQALVRCEYTMANFSTGDRMRKPKGD---RRSTEIS 96
Query: 112 IILKRTLQSICILT-INPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVA 170
+++++T++ CILT + P + + +QV+ DG INAA AL DAGIPM+ +
Sbjct: 97 LVIRQTMEE-CILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDI--- 152
Query: 171 ICCCSAESGY----CILDPTKLEE 190
+ CSA GY +LD +E+
Sbjct: 153 VTSCSA--GYLNSNALLDLNYVED 174
>gi|395512698|ref|XP_003760572.1| PREDICTED: exosome complex component RRP41 [Sarcophilus harrisii]
Length = 245
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 92/224 (41%), Gaps = 53/224 (23%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +LR + + +A GSA ++
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSA------------------------------YIE 42
Query: 65 SGDTKVLAAVYGPKA--GTKKNENPEKASIEVIWKPRTGQIGKPEK---------EYEII 113
G+TK LA VYGP G++ P++A + + T G+ ++ E +
Sbjct: 43 QGNTKALAVVYGPHEMRGSRSRALPDRALVNCQYSMATFSTGERKRRPHGDRKACEMGLQ 102
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
L++T ++ + + P + + +QV+ DG +NAA A++DAGIPM+ +C
Sbjct: 103 LRQTFEAAILTQLYPRSQIDIYVQVLQADGGNYAACVNAATLAVLDAGIPMRDF---VCA 159
Query: 174 CSAE--SGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSL 215
CSA G + D + +EE P L++LP L
Sbjct: 160 CSAGFVDGTALADLSHVEEAAGG-------PQLALALLPASGQL 196
>gi|383319305|ref|YP_005380146.1| archaeal exosome-like complex exonuclease 1 [Methanocella conradii
HZ254]
gi|379320675|gb|AFC99627.1| archaeal exosome-like complex exonuclease 1 [Methanocella conradii
HZ254]
Length = 252
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 85/200 (42%), Gaps = 50/200 (25%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR N+LRP+ +L RA GS CY +
Sbjct: 13 RLDGRGLNELRPIRFKAGVLKRADGS--------------------------CYLEF--- 43
Query: 65 SGDTKVLAAVYGPKAGTKKN-ENPEKA-----------SIEVIWKPRTGQIGKPEKEYEI 112
G KV+AAVYGP+ ++ +N +A S+E +P G + EI
Sbjct: 44 -GGNKVMAAVYGPREVHPRHLQNASRAIVRYRYNMAAFSVEERKRP-----GPDRRSIEI 97
Query: 113 --ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVA 170
+ + L+S+ + + P + + ++++ D INAA AL DAGIPM+ L V+
Sbjct: 98 SKVSREALESVIMQELYPRSAIDIFVEILQADAGTRVAGINAASVALADAGIPMRCL-VS 156
Query: 171 ICCCSAESGYCILDPTKLEE 190
C G +LD K E+
Sbjct: 157 ACAVGKVDGELVLDLNKDED 176
>gi|291416252|ref|XP_002724360.1| PREDICTED: exosome component 4 [Oryctolagus cuniculus]
Length = 245
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 91/219 (41%), Gaps = 53/219 (24%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +LR + + +A GSA ++
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSA------------------------------YIE 42
Query: 65 SGDTKVLAAVYGPKA--GTKKNENPEKASIEVIWKPRTGQIGKPEK---------EYEII 113
G+TK LA VYGP G++ P++A + + T + ++ E +
Sbjct: 43 QGNTKALAVVYGPHEIRGSRSRALPDRALVNCQYSSATFSTAERKRRPHGDRKSCELGLQ 102
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
L++T ++ + ++P + + +QV+ DG +NAA A++DAGIPM+ +C
Sbjct: 103 LRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDF---VCA 159
Query: 174 CSAE--SGYCILDPTKLEEQKMKGFAYLVFPNSILSVLP 210
CSA G + D + +EE P L++LP
Sbjct: 160 CSAGFVDGTALTDLSHVEEASGS-------PQLALALLP 191
>gi|410987869|ref|XP_004000217.1| PREDICTED: exosome complex component RRP41 [Felis catus]
Length = 245
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 79/183 (43%), Gaps = 44/183 (24%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +LR + + +A GSA ++
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSA------------------------------YIE 42
Query: 65 SGDTKVLAAVYGPKA--GTKKNENPEKASIEVIWKPRTGQIGKPEK---------EYEII 113
G+TK LA VYGP G++ P++A + + T G+ ++ E +
Sbjct: 43 QGNTKALAVVYGPHEIRGSRARALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQ 102
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
L++T ++ + ++P + + +QV+ DG +NAA A++DAGIPM+ +C
Sbjct: 103 LRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDF---VCA 159
Query: 174 CSA 176
CSA
Sbjct: 160 CSA 162
>gi|311253303|ref|XP_003125499.1| PREDICTED: exosome complex component RRP41-like isoform 1 [Sus
scrofa]
Length = 245
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 85/199 (42%), Gaps = 46/199 (23%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +LR + + +A GSA ++
Sbjct: 13 RVDGRRARELRKIQARMGVFAQADGSA------------------------------YIE 42
Query: 65 SGDTKVLAAVYGPKA--GTKKNENPEKASIEVIWKPRTGQIGKPEK---------EYEII 113
G+TK LA VYGP G++ P++A + + T G+ ++ E +
Sbjct: 43 QGNTKALAVVYGPHEIRGSRSRALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQ 102
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
L++ ++ + ++P + + +QV+ DG + +N A A++DAGIPM+ +C
Sbjct: 103 LRQAFEAAILTQLHPRSQIDIYVQVLQADGGIYAACVNVATLAVLDAGIPMRDF---VCA 159
Query: 174 CSAE--SGYCILDPTKLEE 190
CSA G + D + +EE
Sbjct: 160 CSAGFVDGTALADLSHVEE 178
>gi|194860851|ref|XP_001969665.1| GG10219 [Drosophila erecta]
gi|190661532|gb|EDV58724.1| GG10219 [Drosophila erecta]
Length = 246
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 86/195 (44%), Gaps = 42/195 (21%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P++LR + C + + GSA QG
Sbjct: 14 RLDGRRPHELRRIKCKLGVFEQPDGSAYMEQG---------------------------- 45
Query: 65 SGDTKVLAAVYGP-KAGTKKNEN--------PEKASIEVIWKPRTGQIGKPEKEYEIILK 115
+TKVLAAVYGP +A +K E+ ++ E ++PR + E+++ L+
Sbjct: 46 --NTKVLAAVYGPHQAKSKHTESIINCQYSQATFSTAERKYRPRGD---RKSLEFKMYLQ 100
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
+ L + + P + + ++V+ DGA A+NAA AL+DAGI + VA
Sbjct: 101 QALSAAIKSELYPRSQIDIYVEVLQADGANYAVALNAATLALIDAGICLNEFIVACTASL 160
Query: 176 AESGYCILDPTKLEE 190
++S + D + EE
Sbjct: 161 SKSNIPLTDISHFEE 175
>gi|16082286|ref|NP_394747.1| exosome complex exonuclease Rrp41 [Thermoplasma acidophilum DSM
1728]
gi|29336949|sp|Q9HIP2.1|ECX1_THEAC RecName: Full=Probable exosome complex exonuclease 1
gi|10640637|emb|CAC12415.1| RNase PH (yeast SIK6) related protein [Thermoplasma acidophilum]
Length = 248
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 63/273 (23%), Positives = 105/273 (38%), Gaps = 65/273 (23%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR+ N+LRP+ +L+RA GSA + W
Sbjct: 18 RLDGRSFNELRPIKIQAGVLNRADGSA---------------------------YIEW-- 48
Query: 65 SGDTKVLAAVYGPKAGTKKNENP----------EKASIEVIWKPRTGQIGKPEK---EYE 111
G K++ VYGPK K+ A+ V + R G P++ E
Sbjct: 49 -GGNKIMVGVYGPKEAYPKHSQDIDHAIVKARYNMAAFSVDERKRPG----PDRRTMEIS 103
Query: 112 IILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAI 171
++ L S ++ P V I+V+ D + AA AL DAG+PM+ + V
Sbjct: 104 KVISEALSSSIMIEQFPRAEIDVYIEVLQADAGTRIAGLTAATVALADAGVPMRDMVVG- 162
Query: 172 CCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTH 231
C G+ +LD +K E+ + P +I+ P I+
Sbjct: 163 CTAGKVDGHMVLDLSKEEDN----YGEADIPIAIM-------------PKTGDIVLMQMD 205
Query: 232 GAMSVDDYFHCLERGRAASAKLSDFLRRSLQSK 264
G ++ D+ + ++ A+ ++S R +L +K
Sbjct: 206 GDVTEDELYQAMDMIFEATKRISQIQREALLNK 238
>gi|195330095|ref|XP_002031744.1| GM23883 [Drosophila sechellia]
gi|194120687|gb|EDW42730.1| GM23883 [Drosophila sechellia]
Length = 223
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 80/162 (49%), Gaps = 3/162 (1%)
Query: 55 SKCYFCYWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIIL 114
S+C G T ++ AV GP +N + + + +E ++P+ G ++ E +
Sbjct: 19 SRCDGSVMYSQGATGLIGAVLGPIEVKTQNLSIDGSYLECNYRPKAGLPQVIDRIREAAI 78
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
+ L+ + +P + SV IQ + D G++ CA+N AC A++ G+P+K+ A+
Sbjct: 79 RDVLELALLSEAHPRSKMSVQIQELEDRGSIDACAVNCACLAMLIGGLPLKYSFAAVHAI 138
Query: 175 SAESGYCILDPTKLEEQKMKG---FAYLVFPNSILSVLPEGS 213
E G +LDP + E Q + FA+ ++L V +GS
Sbjct: 139 INEQGEYVLDPDQSETQHQRASFTFAFDSVEGNLLLVRTKGS 180
>gi|301773432|ref|XP_002922117.1| PREDICTED: exosome complex exonuclease RRP41-like isoform 1
[Ailuropoda melanoleuca]
Length = 245
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 79/183 (43%), Gaps = 44/183 (24%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +LR + + +A GSA ++
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSA------------------------------YIE 42
Query: 65 SGDTKVLAAVYGPKA--GTKKNENPEKASIEVIWKPRTGQIGKPEK---------EYEII 113
G+TK LA VYGP G++ P++A + + T G+ ++ E +
Sbjct: 43 QGNTKALAVVYGPHEIRGSRARALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQ 102
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
L++T ++ + ++P + + +QV+ DG +NAA A++DAGIPM+ +C
Sbjct: 103 LRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDF---VCA 159
Query: 174 CSA 176
CSA
Sbjct: 160 CSA 162
>gi|308512717|gb|ADO33012.1| exosome complex exonuclease RRP41 [Biston betularia]
Length = 245
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 75/181 (41%), Gaps = 42/181 (23%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR PN+LR + C + + GSA QG
Sbjct: 9 RLDGRRPNELRRIRCKLGVFKQPDGSAYLEQG---------------------------- 40
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIG---------KPEKEYEIILK 115
+TKVLAAVYGP +K + E + + T G + E + L+
Sbjct: 41 --NTKVLAAVYGPHQASKSKMSNEGVVVNCQYSMATFSTGERKNRPHGDRKSTEMSLHLR 98
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
+ L + + P + V ++V+ DG+ +NAA AL+DAGIP++ A C CS
Sbjct: 99 QALTAAIKTELYPRSQIDVYVEVLQADGSCYCVCVNAATLALIDAGIPLRAYA---CACS 155
Query: 176 A 176
A
Sbjct: 156 A 156
>gi|198434569|ref|XP_002126010.1| PREDICTED: similar to Exosome complex exonuclease MTR3 (mRNA
transport regulator 3 homolog) (Exosome component 6)
[Ciona intestinalis]
Length = 276
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 74/273 (27%), Positives = 112/273 (41%), Gaps = 46/273 (16%)
Query: 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCY 61
E RADGR Q R + C ++ +A GSA ++ N
Sbjct: 32 EEKRADGRYVTQPRDVFLQCGVITQAKGSA-------------YFEMN------------ 66
Query: 62 WVGSGDTKVLAAVYGPKAGTKKNE---NPEKASIEVIWKPRTGQI------GKPEKEYEI 112
TKV+ +VYGPK + E N K E+ + P + G + E
Sbjct: 67 -----KTKVICSVYGPKDIEMREEFQINKGKLKCELKYAPYSSPKHGDHIPGASDVEKSD 121
Query: 113 ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAIC 172
IL + S L P + V + V+ DDG+++P AI AA ALVDAGI M + A
Sbjct: 122 ILLEAISSGVCLQRYPKSQIDVYVIVLEDDGSVMPAAITAASVALVDAGIEMYDVITASS 181
Query: 173 CCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHG 232
A I+DPT EE F+ L S + L +G +V P + + + V+ G
Sbjct: 182 IRIAGQDTFIIDPTSSEE-----FSPLNLEKS--NDLNQGMVMVALLPSINQVSSVVSSG 234
Query: 233 AMSVDDYFHCLERGRAASAKLSDFLRRSLQSKL 265
+ + + R ++ L +R+ L + L
Sbjct: 235 HLECNVLQEAIRSCRYSAQNLHSIVRKCLVNSL 267
>gi|189239465|ref|XP_975230.2| PREDICTED: similar to exosome complex exonuclease RRP41, putative
[Tribolium castaneum]
Length = 249
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 78/195 (40%), Gaps = 39/195 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR ++LR + C + GSA QG
Sbjct: 14 RQDGRRADELRRIRCKLGVFTEPDGSAYLEQGL--------------------------- 46
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEK---------EYEIILK 115
TKVLAAVYGP + A + + G+ +K E I L+
Sbjct: 47 ---TKVLAAVYGPHQVGFAKAQHDSAVVNCQFSMAVFSTGERKKRPRGDRKSTEISIHLR 103
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
+ L + + + P T V ++V+H DG + P +NAA AL+DAGIP+K A
Sbjct: 104 QALTAAIKVELYPWTQIDVYVEVLHADGGIYPACVNAATLALIDAGIPLKEYVCACTASL 163
Query: 176 AESGYCILDPTKLEE 190
A + +LD + EE
Sbjct: 164 ANNDVPLLDVSHQEE 178
>gi|118151420|ref|NP_001071554.1| exosome complex component RRP41 [Bos taurus]
gi|81673708|gb|AAI09820.1| Exosome component 4 [Bos taurus]
Length = 245
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 85/199 (42%), Gaps = 46/199 (23%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +LR + + +A GSA ++
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSA------------------------------YIE 42
Query: 65 SGDTKVLAAVYGPKA--GTKKNENPEKASIEVIWKPRTGQIGKPEK---------EYEII 113
G+TK LA VYGP G++ P++ + + T G+ ++ E +
Sbjct: 43 QGNTKALAVVYGPHEIRGSRARALPDRPLVNCQYSSATFSTGERKRRPHGDRKSCEMGLQ 102
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
L++T ++ + ++P + + +QV+ DG +NAA A++DAGIPM+ +C
Sbjct: 103 LRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDF---VCA 159
Query: 174 CSAE--SGYCILDPTKLEE 190
CSA G + D + +EE
Sbjct: 160 CSAGFVDGTALADLSHVEE 178
>gi|57095694|ref|XP_539207.1| PREDICTED: exosome complex component RRP41 isoform 1 [Canis lupus
familiaris]
Length = 245
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 79/183 (43%), Gaps = 44/183 (24%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +LR + + +A GSA ++
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSA------------------------------YIE 42
Query: 65 SGDTKVLAAVYGPKA--GTKKNENPEKASIEVIWKPRTGQIGKPEK---------EYEII 113
G+TK LA VYGP G++ P++A + + T G+ ++ E +
Sbjct: 43 QGNTKALAVVYGPHEIRGSRARALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLH 102
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
L++T ++ + ++P + + +QV+ DG +NAA A++DAGIPM+ +C
Sbjct: 103 LRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDF---VCA 159
Query: 174 CSA 176
CSA
Sbjct: 160 CSA 162
>gi|452822821|gb|EME29837.1| exosome complex component RRP41 [Galdieria sulphuraria]
Length = 249
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 80/183 (43%), Gaps = 42/183 (22%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P ++R + C IL RA GS H +
Sbjct: 13 RTDGRRPLEIRKVTCRMGILPRADGSC---------------HLEM-------------- 43
Query: 65 SGDTKVLAAVYGPKAGTKKNEN-------PEKASIEVIWKPRTGQIGKPEKEYEIILKRT 117
G+T VLA VYGP+ + + + AS + R + + E +K+T
Sbjct: 44 -GNTIVLATVYGPRELSSRQSSCGIIRCEYSMASFASTDRRRGKRSDRNSVEMASSIKKT 102
Query: 118 LQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAE 177
+++ + + P + + IQV+ DG+ AINA A+V+AGIPMK L V+ CSA
Sbjct: 103 FENVLLTDLFPKSRVDIFIQVLQADGSERSAAINAVTIAMVNAGIPMKDLIVS---CSA- 158
Query: 178 SGY 180
GY
Sbjct: 159 -GY 160
>gi|297683870|ref|XP_002819616.1| PREDICTED: exosome complex component RRP41 [Pongo abelii]
Length = 343
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 88/192 (45%), Gaps = 27/192 (14%)
Query: 22 SILHRAHGSASW------SQGFRFIQTS----HFYHFNLFVFTSKCYFCYWVGSGDTKVL 71
S RA G A+W QG+R + VF ++ ++ G+TK L
Sbjct: 89 SSRERADGRAAWRAGALSDQGYRVDGRRAGELRKIQARMGVF-AQADGSGYIEQGNTKAL 147
Query: 72 AAVYGPKA--GTKKNENPEKASIEVIWKPRTGQIGKPEK---------EYEIILKRTLQS 120
A VYGP G++ P++A + + T G+ ++ E + L++T ++
Sbjct: 148 AVVYGPHEIRGSRARALPDRALVNCQYSSATFSTGERKRRRHGDRKSCEMGLQLRQTFEA 207
Query: 121 ICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAE--S 178
+ ++P + + +QV+ DG +NAA A++DAGIPM+ +C CSA
Sbjct: 208 AILTQLHPRSQIDIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDF---VCACSAGFVD 264
Query: 179 GYCILDPTKLEE 190
G + D + +EE
Sbjct: 265 GTALADLSHVEE 276
>gi|47848476|dbj|BAD22331.1| putative exosome component 4 [Oryza sativa Japonica Group]
gi|47848647|dbj|BAD22495.1| putative exosome component 4 [Oryza sativa Japonica Group]
Length = 245
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 87/206 (42%), Gaps = 63/206 (30%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR PN++R L ++ RA GSA LF
Sbjct: 11 RVDGRRPNEMRQLKGEVGVVARADGSA------------------LFEM----------- 41
Query: 65 SGDTKVLAAVYGPK--------------AGTKKNE--------NPEKASIEVIW------ 96
G+T+V+AAVYGP+ + K E K++ +++W
Sbjct: 42 -GNTRVIAAVYGPREVAAHPDYWLVRLISKKAKREGLRGRSRTKVSKSTAKMLWMADFST 100
Query: 97 --KPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAAC 154
+ R + + E +++++T+++ + + P + + +QV+ DG INAA
Sbjct: 101 GDRRRKPKGDRRSTEISLVIRQTMEASILTHLMPRSQIDIFVQVLQADGGTRAACINAAT 160
Query: 155 AALVDAGIPMKHLAVAICCCSAESGY 180
AL DAGIPM+ + + CSA+ Y
Sbjct: 161 LALADAGIPMRDI---VTSCSADLNY 183
>gi|332796515|ref|YP_004458015.1| exosome complex exonuclease 1 [Acidianus hospitalis W1]
gi|332694250|gb|AEE93717.1| exosome complex exonuclease 1 [Acidianus hospitalis W1]
Length = 243
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 87/195 (44%), Gaps = 40/195 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P++LRP+ +L A GSA V
Sbjct: 16 RLDGRRPDELRPMKMEVGVLKNADGSA------------------------------IVE 45
Query: 65 SGDTKVLAAVYGPKAGTKKN-ENPEKASIEVIW--------KPRTGQIGKPEKEYEIILK 115
G+TK+LAAVYGP+ ++ P +A + V + + + + E E +++
Sbjct: 46 VGNTKILAAVYGPREMHPRHLALPNRAVLRVRYHMTPFSTDERKNPAPSRREIELSKVIR 105
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
L+S ++ P T+ V ++V+ D ++ AA A+VDAGIP++ L A+
Sbjct: 106 EALESQILVEQFPRTSIDVFMEVLQADAGTRLASLMAASLAVVDAGIPVRDLIAAVAVGK 165
Query: 176 AESGYCILDPTKLEE 190
A+ G +LD + E+
Sbjct: 166 AD-GVVVLDLNEPED 179
>gi|194740918|ref|XP_001952937.1| GF17467 [Drosophila ananassae]
gi|190625996|gb|EDV41520.1| GF17467 [Drosophila ananassae]
Length = 234
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 102/252 (40%), Gaps = 51/252 (20%)
Query: 12 NQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVL 71
+QLR + C + L R GS +SQG + V+
Sbjct: 12 DQLRRMHCEFNPLSRCDGSVMYSQGA------------------------------SVVI 41
Query: 72 AAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTT 131
+AV GP +N + + + +E ++P+ G E+ E +K L + P +
Sbjct: 42 SAVLGPVEVKSQNLSIDGSYLECNYRPKAGLPQVKERLREAAIKDILDLTVLSEAYPRSK 101
Query: 132 TSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQ 191
S+ +Q + D G++ CA+N+AC A++ G+P+K A+ C E G +LDP E
Sbjct: 102 MSIQVQELEDRGSMDACAVNSACLAMLIGGLPLKCSFAAVHCIIDEQGDYVLDPDHSETA 161
Query: 192 KMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDY--FHCLERGRAA 249
+ F + ME ++ T GA ++ + CL R+A
Sbjct: 162 HQRASFTFAF-----------------DSMEGNLLLIQTKGAFKIEQFNDIECL--CRSA 202
Query: 250 SAKLSDFLRRSL 261
S ++ F R +
Sbjct: 203 SQEIFKFYRSQI 214
>gi|195398184|ref|XP_002057704.1| GJ18275 [Drosophila virilis]
gi|194141358|gb|EDW57777.1| GJ18275 [Drosophila virilis]
Length = 249
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 86/195 (44%), Gaps = 39/195 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P++LR + C + + GSA QG
Sbjct: 14 RLDGRRPHELRHIKCKLGVFEQPDGSAYMEQG---------------------------- 45
Query: 65 SGDTKVLAAVYGP-KAGTKKNENPE--------KASIEVIWKPRTGQIGKPEKEYEIILK 115
+TKVLAAVYGP +A KK E + +A+ + + + +E+++ L+
Sbjct: 46 --NTKVLAAVYGPHQAKGKKTEGNDLIINCQYSQATFSTSERKNRPRGDRKSQEFKMYLQ 103
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
+ L + + P + + ++V+ DGA ++NAA AL+DAGI + VA
Sbjct: 104 QALSAAIKSELYPRSQIDIYVEVLQADGANYAVSLNAATLALIDAGICLNEFVVACTASL 163
Query: 176 AESGYCILDPTKLEE 190
++S + D + +EE
Sbjct: 164 SKSNIPLTDISHIEE 178
>gi|406695095|gb|EKC98410.1| 3'-to-5' phosphorolytic exoribonuclease, Ski6p [Trichosporon asahii
var. asahii CBS 8904]
Length = 254
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 88/212 (41%), Gaps = 43/212 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R D R P +LR L+C+ + +A GS+ SQG
Sbjct: 13 RHDNRRPFELRSLSCALGVHPQADGSSQVSQGL--------------------------- 45
Query: 65 SGDTKVLAAVYGP-----KAGTKKNE-NPEKASIEVIWKPRTGQ-IGKPEKEYEII---- 113
T V AAV+GP KAG ++ N V W GQ G+ + ++
Sbjct: 46 ---TTVQAAVFGPREPKQKAGAAHDKANVVVEVGVVPWAQGQGQGRGRTRGDKRLLEIGA 102
Query: 114 -LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAIC 172
+++T + + + + P + +V +QV+ DG +LP AINA AL+DAGI M H V
Sbjct: 103 AIRQTFEPVIQVGLYPRSEIAVQVQVLQADGGILPTAINAVTLALIDAGIAM-HDYVTSV 161
Query: 173 CCSAESGYCILDPTKLEEQKMKGFAYLVFPNS 204
+LD + EE + PNS
Sbjct: 162 SVGLHLTQALLDLSAPEENDLPSLVVASLPNS 193
>gi|195571989|ref|XP_002103983.1| GD18693 [Drosophila simulans]
gi|194199910|gb|EDX13486.1| GD18693 [Drosophila simulans]
Length = 223
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 80/162 (49%), Gaps = 3/162 (1%)
Query: 55 SKCYFCYWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIIL 114
S+C G T ++ AV GP +N + + + +E ++P+ G ++ E +
Sbjct: 19 SRCDGSVMYSQGATGLIGAVLGPIEVKTQNLSIDGSYLECNYRPKAGLPQVIDRIREAAI 78
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
+ L+ + +P + SV IQ + D G++ CA+N AC A++ G+P+K+ A+
Sbjct: 79 RDVLELALLSEAHPRSKMSVQIQELEDRGSIDACAVNCACLAMLIGGLPLKYSFAAVHAI 138
Query: 175 SAESGYCILDPTKLEEQKMKG---FAYLVFPNSILSVLPEGS 213
E G +LDP + E Q + FA+ ++L V +GS
Sbjct: 139 INEQGEYVLDPDQSETQHQRASFTFAFDSVEGNLLLVKTKGS 180
>gi|401885352|gb|EJT49471.1| 3'-to-5' phosphorolytic exoribonuclease, Ski6p [Trichosporon asahii
var. asahii CBS 2479]
Length = 254
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 88/212 (41%), Gaps = 43/212 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R D R P +LR L+C+ + +A GS+ SQG
Sbjct: 13 RHDNRRPFELRSLSCALGVHPQADGSSQVSQGL--------------------------- 45
Query: 65 SGDTKVLAAVYGP-----KAGTKKNE-NPEKASIEVIWKPRTGQ-IGKPEKEYEII---- 113
T V AAV+GP KAG ++ N V W GQ G+ + ++
Sbjct: 46 ---TTVQAAVFGPREPKQKAGAAHDKANVVVEVGVVPWAQGQGQGRGRTRGDKRLLEIGA 102
Query: 114 -LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAIC 172
+++T + + + + P + +V +QV+ DG +LP AINA AL+DAGI M H V
Sbjct: 103 AIRQTFEPVIQVGLYPRSEIAVQVQVLQADGGILPTAINAVTLALIDAGIAM-HDYVTSV 161
Query: 173 CCSAESGYCILDPTKLEEQKMKGFAYLVFPNS 204
+LD + EE + PNS
Sbjct: 162 SVGLHLTQALLDLSAPEENDLPSLVVASLPNS 193
>gi|304314830|ref|YP_003849977.1| exosome RNA binding protein [Methanothermobacter marburgensis str.
Marburg]
gi|302588289|gb|ADL58664.1| predicted exosome RNA binding protein [Methanothermobacter
marburgensis str. Marburg]
Length = 231
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 102/254 (40%), Gaps = 67/254 (26%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR ++LRPL IL RA GS+ + F
Sbjct: 8 REDGRAFDELRPLRIEAGILERADGSS-------------YLEF---------------- 38
Query: 65 SGDTKVLAAVYGPK-AGTKKNENPEKA-----------SIEVIWKPRTGQIGKPEKEYEI 112
G K+L AVYGP+ A +K + P++A S+E +P G + EI
Sbjct: 39 -GGNKILVAVYGPREAQIRKLQRPDRAVIRCRYNMAPFSVEERKRP-----GPDRRSVEI 92
Query: 113 --ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVA 170
I L+ IL P + V I+V+ +G I AA AL DAGIPM+ + VA
Sbjct: 93 SKITAEALRPALILEKFPRSVIDVFIEVLEAEGGTRCAGITAASVALADAGIPMRDMVVA 152
Query: 171 ICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVT 230
C + +LD + EE+ G A + P +IL P I +
Sbjct: 153 -CAAGKVNDQVVLDLS--EEEDKAGQADV--PVAIL-------------PRTREITLLQS 194
Query: 231 HGAMSVDDYFHCLE 244
G +S D++ L+
Sbjct: 195 DGNLSDDEFERALD 208
>gi|196014350|ref|XP_002117034.1| hypothetical protein TRIADDRAFT_61054 [Trichoplax adhaerens]
gi|190580256|gb|EDV20340.1| hypothetical protein TRIADDRAFT_61054 [Trichoplax adhaerens]
Length = 240
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 73/139 (52%), Gaps = 11/139 (7%)
Query: 62 WVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGK--------PEKEYEII 113
++ +TK++ AVYGP+ KK E +A++ K T + EKEY I
Sbjct: 29 YIELRNTKIICAVYGPREVAKKQEFNIQATVACELKFATFSCRRRRRHIQDSQEKEYSQI 88
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
+ + LQ + L P + + I V+ +DG++L AI AA AL D+GI + VAI C
Sbjct: 89 IVQALQPVVRLDKYPKSQIDIFITVLQNDGSVLGGAITAASVALADSGIEI--FDVAIGC 146
Query: 174 CSAESG-YCILDPTKLEEQ 191
C + G ++DPT LEE+
Sbjct: 147 CLRQIGDLSLIDPTYLEEE 165
>gi|260834851|ref|XP_002612423.1| hypothetical protein BRAFLDRAFT_121031 [Branchiostoma floridae]
gi|229297800|gb|EEN68432.1| hypothetical protein BRAFLDRAFT_121031 [Branchiostoma floridae]
Length = 246
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 112/258 (43%), Gaps = 57/258 (22%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR ++LR + + +A GSA ++
Sbjct: 13 RIDGRRSSELRKVCARMGVFTQADGSA------------------------------YIE 42
Query: 65 SGDTKVLAAVYGP---KAGTKKNENPEKASIEVIWKPRTGQIG---------KPEKEYEI 112
G+TK LA VYGP + G K ++ ++A + + T G + +E +
Sbjct: 43 QGNTKALATVYGPHEVRKGRGKIQH-DRAVVNCQFSMATFSTGERKSRPKGDRRSQEMSM 101
Query: 113 ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAIC 172
L++T +++ + + P + + +Q++ DG +NAA A++DAGIPMK +C
Sbjct: 102 HLRQTFEAVIVTELFPRSQIDIYVQILQADGGNYCACVNAATLAVIDAGIPMKDY---VC 158
Query: 173 CCSAESGYC----ILDPTKLEEQKMKGFAYL-VFPNSILSVLPEGSSLVQGEPMEHGIIT 227
C+A G+ +LD + +EE F + + P S VL E +S + + ME ++
Sbjct: 159 ACTA--GFIQDSPLLDISYVEESAGAPFLTVAMMPKSEQIVLLEMNSRLHADNMEK-VLD 215
Query: 228 SVTHGAMSVDDYFHCLER 245
T G D F L+R
Sbjct: 216 LATQGC---KDVFAVLDR 230
>gi|15897636|ref|NP_342241.1| exosome complex exonuclease Rrp41 [Sulfolobus solfataricus P2]
gi|29337007|sp|Q9UXC2.1|ECX1_SULSO RecName: Full=Probable exosome complex exonuclease 1
gi|71042717|pdb|2BR2|B Chain B, Rnase Ph Core Of The Archaeal Exosome
gi|71042719|pdb|2BR2|D Chain D, Rnase Ph Core Of The Archaeal Exosome
gi|71042721|pdb|2BR2|F Chain F, Rnase Ph Core Of The Archaeal Exosome
gi|71042723|pdb|2BR2|H Chain H, Rnase Ph Core Of The Archaeal Exosome
gi|71042725|pdb|2BR2|J Chain J, Rnase Ph Core Of The Archaeal Exosome
gi|71042727|pdb|2BR2|L Chain L, Rnase Ph Core Of The Archaeal Exosome
gi|71042729|pdb|2BR2|N Chain N, Rnase Ph Core Of The Archaeal Exosome
gi|71042731|pdb|2BR2|P Chain P, Rnase Ph Core Of The Archaeal Exosome
gi|71042733|pdb|2BR2|R Chain R, Rnase Ph Core Of The Archaeal Exosome
gi|71042735|pdb|2BR2|T Chain T, Rnase Ph Core Of The Archaeal Exosome
gi|71042737|pdb|2BR2|V Chain V, Rnase Ph Core Of The Archaeal Exosome
gi|71042739|pdb|2BR2|X Chain X, Rnase Ph Core Of The Archaeal Exosome
gi|83754539|pdb|2C37|B Chain B, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754541|pdb|2C37|D Chain D, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754543|pdb|2C37|F Chain F, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754545|pdb|2C37|H Chain H, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754547|pdb|2C37|J Chain J, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754549|pdb|2C37|L Chain L, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754551|pdb|2C37|N Chain N, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754553|pdb|2C37|P Chain P, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754555|pdb|2C37|R Chain R, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754557|pdb|2C37|T Chain T, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754559|pdb|2C37|V Chain V, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754561|pdb|2C37|X Chain X, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754563|pdb|2C38|B Chain B, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754565|pdb|2C38|D Chain D, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754567|pdb|2C38|F Chain F, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754569|pdb|2C38|H Chain H, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754571|pdb|2C38|J Chain J, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754573|pdb|2C38|L Chain L, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754575|pdb|2C38|N Chain N, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754577|pdb|2C38|P Chain P, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754579|pdb|2C38|R Chain R, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754581|pdb|2C38|T Chain T, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754583|pdb|2C38|V Chain V, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754585|pdb|2C38|X Chain X, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754587|pdb|2C39|B Chain B, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754589|pdb|2C39|D Chain D, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754591|pdb|2C39|F Chain F, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754593|pdb|2C39|H Chain H, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754595|pdb|2C39|J Chain J, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754597|pdb|2C39|L Chain L, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754599|pdb|2C39|N Chain N, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754601|pdb|2C39|P Chain P, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754603|pdb|2C39|R Chain R, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754605|pdb|2C39|T Chain T, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754607|pdb|2C39|V Chain V, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754609|pdb|2C39|X Chain X, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|6015742|emb|CAB57569.1| ribonuclease PH [Sulfolobus solfataricus P2]
gi|13813903|gb|AAK41031.1| Ribonuclease PH (rph) [Sulfolobus solfataricus P2]
Length = 248
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 84/195 (43%), Gaps = 40/195 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P++LR + +L A GSA + G
Sbjct: 19 RTDGRKPDELRSIKIELGVLKNADGSAIFEMG---------------------------- 50
Query: 65 SGDTKVLAAVYGPKAGTKKNEN-PEKASIEVIW--------KPRTGQIGKPEKEYEIILK 115
+TK +AAVYGPK ++ + P++A + V + + + + E E +++
Sbjct: 51 --NTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTPFSTDERKNPAPSRREIELSKVIR 108
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
L+S ++ + P T V +++ D ++ AA AL DAGIPM+ L +
Sbjct: 109 EALESAVLVELFPRTAIDVFTEILQADAGSRLVSLMAASLALADAGIPMRDLIAGVAVGK 168
Query: 176 AESGYCILDPTKLEE 190
A+ G ILD + E+
Sbjct: 169 AD-GVIILDLNETED 182
>gi|40217446|emb|CAE46379.1| ribonuclease PH [uncultured archaeon]
gi|268323829|emb|CBH37417.1| Probable exosome complex exonuclease 2 [uncultured archaeon]
Length = 242
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 80/190 (42%), Gaps = 42/190 (22%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R GR +LRP+ +L RA GS CYF
Sbjct: 14 RLSGRGFEELRPIKIDVGVLKRADGS--------------------------CYFEL--- 44
Query: 65 SGDTKVLAAVYGPKAGTKKN-ENPEKASIEVIW---------KPRTGQIGKPEKEYEIIL 114
GD K LAAVYGP+ ++ +N + A ++ + + R G + +E ++
Sbjct: 45 -GDNKALAAVYGPREMHPRHFQNAKMAVVKYRYNMAPFSVDDRKRPGP-DRRSQEISMVS 102
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
++ L + + + P T V ++V+ D INAA AL DAGIPM+ L ++
Sbjct: 103 RKALDPVILRELYPKTAIEVYVEVLQSDAGTRTAGINAASVALADAGIPMRDLVSSVAIG 162
Query: 175 SAESGYCILD 184
+ G +LD
Sbjct: 163 KID-GEVVLD 171
>gi|351713983|gb|EHB16902.1| Exosome complex exonuclease RRP41 [Heterocephalus glaber]
Length = 256
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 86/210 (40%), Gaps = 57/210 (27%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +LR + + +A GSA ++
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSA------------------------------YIE 42
Query: 65 SGDTKVLAAVYGPKA-------------GTKKNENPEKASIEVIWKPRTGQIGKPEK--- 108
G+TK LA VYGP G++ P++A + + T G+ ++
Sbjct: 43 QGNTKALAVVYGPHEASLVYLSFLFQIRGSRSRALPDRALVNCQYSSATFSTGERKRRPH 102
Query: 109 ------EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGI 162
E + L++T ++ + ++P + + +QV+ DG +NAA A++DAGI
Sbjct: 103 GDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNAATLAVLDAGI 162
Query: 163 PMKHLAVAICCCSAE--SGYCILDPTKLEE 190
PM+ +C CSA G + D + +EE
Sbjct: 163 PMRDF---VCACSAGFVDGTALADLSHVEE 189
>gi|195499795|ref|XP_002097098.1| GE26036 [Drosophila yakuba]
gi|194183199|gb|EDW96810.1| GE26036 [Drosophila yakuba]
Length = 227
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 91/206 (44%), Gaps = 21/206 (10%)
Query: 55 SKCYFCYWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIIL 114
S+C G T ++ AV GP +N + + + +E ++P+ G E+ E +
Sbjct: 19 SRCDGSVMYSQGATGLIGAVLGPIEVKTQNLSIDGSYLECNYRPKAGLPQVKERIREAAI 78
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
+ L+ + +P + SV IQ + D G++ CA+N AC A++ G+P+K A+ C
Sbjct: 79 RDVLELALLSEAHPRSKMSVQIQELEDRGSIDACAVNCACLAMLIGGLPLKCSFAAVHCI 138
Query: 175 SAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAM 234
E G +LDP + E + F + +E ++ T GA
Sbjct: 139 INEQGEYVLDPDQSETLHQRASFTFAF-----------------DSVEGNLLLVQTKGAF 181
Query: 235 SVDDY--FHCLERGRAASAKLSDFLR 258
+ + CL R+ASA++ F R
Sbjct: 182 KIAQFNDIECL--CRSASAEIFQFYR 205
>gi|15678710|ref|NP_275826.1| exosome complex exonuclease Rrp41 [Methanothermobacter
thermautotrophicus str. Delta H]
gi|29336573|sp|O26779.1|ECX1_METTH RecName: Full=Probable exosome complex exonuclease 1
gi|295321490|pdb|2WNR|B Chain B, The Structure Of Methanothermobacter Thermautotrophicus
Exosome Core Assembly
gi|295321492|pdb|2WNR|D Chain D, The Structure Of Methanothermobacter Thermautotrophicus
Exosome Core Assembly
gi|295321494|pdb|2WNR|F Chain F, The Structure Of Methanothermobacter Thermautotrophicus
Exosome Core Assembly
gi|2621768|gb|AAB85188.1| ribonuclease PH [Methanothermobacter thermautotrophicus str. Delta
H]
Length = 240
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 85/202 (42%), Gaps = 50/202 (24%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR ++LRPL IL RA GS+ + F
Sbjct: 17 REDGRAFDELRPLKIEAGILERADGSS-------------YLEF---------------- 47
Query: 65 SGDTKVLAAVYGPK-AGTKKNENPEKA-----------SIEVIWKPRTGQIGKPEKEYEI 112
G K+L AVYGP+ A +K + P++A S+E +P G + EI
Sbjct: 48 -GGNKILVAVYGPREAQIRKLQRPDRAVIRCRYNMAPFSVEERKRP-----GPDRRSVEI 101
Query: 113 --ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVA 170
I L+ IL P + V I+V+ +G I AA AL DAGIPM+ + VA
Sbjct: 102 SKITAEALRPALILEKFPRSVIDVFIEVLEAEGGTRCAGITAASVALADAGIPMRDMVVA 161
Query: 171 ICCCSAESGYCILDPTKLEEQK 192
C +LD ++ E+++
Sbjct: 162 -CAAGKVGDQVVLDLSEEEDKE 182
>gi|449303838|gb|EMC99845.1| hypothetical protein BAUCODRAFT_352759 [Baudoinia compniacensis
UAMH 10762]
Length = 253
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 90/208 (43%), Gaps = 50/208 (24%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR N+LR L S S+ + GSA QG
Sbjct: 14 RLDGRRWNELRRLHASLSVQSSSDGSAYLEQG---------------------------- 45
Query: 65 SGDTKVLAAVYGPKAGTKKN----ENPEKASIEVIWKPRTG----QIGKPEK---EYEII 113
+TK+LA V GP+ ++ + K +EV P +G + K EK E ++
Sbjct: 46 --NTKILATVSGPQEPVRRTGRDGSSEAKIEVEVNVTPFSGTDRKRRAKGEKRVQELQLT 103
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
+ R Q + + + P++ V + V+ DG+LL +NAA AL+DAGIPM +A C
Sbjct: 104 VARAFQGVVLGHLYPHSVVEVRLHVLSQDGSLLAACLNAATLALIDAGIPMTDY-IAACT 162
Query: 174 CSAESGYC--------ILDPTKLEEQKM 193
++ +LD LEEQ++
Sbjct: 163 VASSPSSDQSIDDSDPLLDLNGLEEQEL 190
>gi|195472532|ref|XP_002088554.1| GE11809 [Drosophila yakuba]
gi|194174655|gb|EDW88266.1| GE11809 [Drosophila yakuba]
Length = 246
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 84/192 (43%), Gaps = 36/192 (18%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P++LR + C + + GSA QG
Sbjct: 14 RLDGRRPHELRRIKCKLGVFEQPDGSAYMEQG---------------------------- 45
Query: 65 SGDTKVLAAVYGP-KAGTKKNENP-----EKASIEVIWKPRTGQIGKPEKEYEIILKRTL 118
+TKVLAAVYGP +A K+ E+ +A+ + + + E+++ L++ L
Sbjct: 46 --NTKVLAAVYGPHQAKGKQTESIINCQYSQATFSTAERKNRPRGDRKSLEFKMYLQQAL 103
Query: 119 QSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAES 178
+ + P + + ++V+ DGA A+NAA AL+DAGI + VA ++S
Sbjct: 104 SAAIKSELYPRSQIDIYVEVLQADGANYAVALNAATLALIDAGICLNEFIVACTASLSKS 163
Query: 179 GYCILDPTKLEE 190
+ D + EE
Sbjct: 164 NIPLTDISHFEE 175
>gi|195996065|ref|XP_002107901.1| hypothetical protein TRIADDRAFT_51876 [Trichoplax adhaerens]
gi|190588677|gb|EDV28699.1| hypothetical protein TRIADDRAFT_51876 [Trichoplax adhaerens]
Length = 243
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 92/226 (40%), Gaps = 55/226 (24%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P ++R C +L RA GSA QG
Sbjct: 10 RIDGRRPEEIRRFNCRLGVLSRADGSAYLEQG---------------------------- 41
Query: 65 SGDTKVLAAVYGP-KAGTKKNENPEKASIEVIW-------KPRTGQIGKPEKEYEI--IL 114
+TK LA++ GP +AG K ++ I + R + ++ +I ++
Sbjct: 42 --NTKALASINGPHQAGDKAKIKHDRVHINFQYSMATFSTNERRNRPKGDKRSIDISQLM 99
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
+ QS + + P + + +Q++ DG INAA AL+DAG+PMK IC C
Sbjct: 100 REIFQSAILTDLYPKSQIDIHVQILQADGGNYSACINAATLALMDAGVPMKDF---ICSC 156
Query: 175 SAE--SGYCILDPTKLEEQKMKGFAYLVFPNSILS--VLPEGSSLV 216
+A I+D EE L F N +L+ +LP ++
Sbjct: 157 TASLVDSKTIIDVNNSEE--------LHFSNPLLTLAILPTSEEII 194
>gi|118484971|gb|ABK94350.1| unknown [Populus trichocarpa]
Length = 53
Score = 69.7 bits (169), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/36 (77%), Positives = 34/36 (94%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQG 36
ME+DR DGR+P+QLRPL+CS ++LHRAHGSASWSQG
Sbjct: 1 MEIDRDDGRSPSQLRPLSCSHNVLHRAHGSASWSQG 36
>gi|154313781|ref|XP_001556216.1| hypothetical protein BC1G_05740 [Botryotinia fuckeliana B05.10]
gi|347832379|emb|CCD48076.1| similar to exosome complex subunit Rrp46 [Botryotinia fuckeliana]
Length = 256
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 75/272 (27%), Positives = 117/272 (43%), Gaps = 55/272 (20%)
Query: 22 SILHRAHGSASWSQ-GFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLAAVYGPKAG 80
S LHR GSAS+SQ G+ I AV GP
Sbjct: 12 SPLHRVDGSASFSQNGYTII-------------------------------GAVNGPIEV 40
Query: 81 TKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVV- 139
+++E PE+A+I+VI +P G G E+ E IL+ +L+ I ++ P T + +Q+
Sbjct: 41 QRRDELPEEAAIDVIVRPAAGVGGTRERHLEAILQSSLRQIILIHNFPRTLIQITLQITS 100
Query: 140 --HDDGA------------LLPCAINAACAALVDAGIP--MKHLAVAICCCSAESGYCIL 183
+D A LLP + + L+ A IP M +V + + E+G I+
Sbjct: 101 TPENDTAWSKLVQASSNLPLLPALLQTSVLTLLSASIPLSMTLTSVLLALKNKETGTTII 160
Query: 184 D-PTKLEEQKMKGFAYLVFPN--SILSVLPEGS-SLVQGEPM-EHG-IITSVTHGAMSVD 237
+ PT L+ Q L F + +L EGS L + E + EHG + HG + D
Sbjct: 161 ENPTPLDCQDAASVHVLAFTSHGELLVAESEGSFDLDEWEELYEHGKSLCCKGHGLAAED 220
Query: 238 DYFHCLERGRAASAKLSDFLRRSLQSKLPGDL 269
D H A + + F++ ++Q K+ DL
Sbjct: 221 DIMHEDGLENEAPSSMMMFVKSAVQEKVATDL 252
>gi|284174962|ref|ZP_06388931.1| exosome complex exonuclease Rrp41 [Sulfolobus solfataricus 98/2]
gi|384434251|ref|YP_005643609.1| exosome complex exonuclease 1 [Sulfolobus solfataricus 98/2]
gi|299689089|pdb|3L7Z|B Chain B, Crystal Structure Of The S. Solfataricus Archaeal Exosome
gi|299689092|pdb|3L7Z|E Chain E, Crystal Structure Of The S. Solfataricus Archaeal Exosome
gi|299689095|pdb|3L7Z|H Chain H, Crystal Structure Of The S. Solfataricus Archaeal Exosome
gi|261602405|gb|ACX92008.1| exosome complex exonuclease 1 [Sulfolobus solfataricus 98/2]
Length = 245
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 84/195 (43%), Gaps = 40/195 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P++LR + +L A GSA + G
Sbjct: 16 RTDGRKPDELRSIKIELGVLKNADGSAIFEMG---------------------------- 47
Query: 65 SGDTKVLAAVYGPKAGTKKNEN-PEKASIEVIW--------KPRTGQIGKPEKEYEIILK 115
+TK +AAVYGPK ++ + P++A + V + + + + E E +++
Sbjct: 48 --NTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTPFSTDERKNPAPSRREIELSKVIR 105
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
L+S ++ + P T V +++ D ++ AA AL DAGIPM+ L +
Sbjct: 106 EALESAVLVELFPRTAIDVFTEILQADAGSRLVSLMAASLALADAGIPMRDLIAGVAVGK 165
Query: 176 AESGYCILDPTKLEE 190
A+ G ILD + E+
Sbjct: 166 AD-GVIILDLNETED 179
>gi|240104093|ref|YP_002960402.1| exosome complex exonuclease Rrp41 [Thermococcus gammatolerans EJ3]
gi|259645401|sp|C5A2B9.1|ECX1_THEGJ RecName: Full=Probable exosome complex exonuclease 1
gi|239911647|gb|ACS34538.1| 3'-5' exoribonuclease, exosome complex exonuclease 1, Rrp41p-like
protein (Rrp41p) [Thermococcus gammatolerans EJ3]
Length = 249
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 80/195 (41%), Gaps = 40/195 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +LR + +L A GSA + W
Sbjct: 17 RIDGRRKYELRKIHMEVGVLKNADGSA---------------------------YIEW-- 47
Query: 65 SGDTKVLAAVYGPKAGTKKN-ENPEKASIEVIWK------PRTGQIGKPEKEYEI--ILK 115
G K+LAAVYGP+ K+ + P+ A + V + + G + EI +++
Sbjct: 48 -GKNKILAAVYGPREIHPKHLQRPDTAVLRVRYNMAPFSVEERKKPGPDRRSVEISKVIR 106
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
L+ IL + P T V I+V+ D I AA AL DAG+PM+ L VA C
Sbjct: 107 GALEPALILEMFPRTVVDVFIEVLQADAGTRVAGITAASLALADAGVPMRDL-VAACAAG 165
Query: 176 AESGYCILDPTKLEE 190
G +LD K E+
Sbjct: 166 KIDGEIVLDLNKDED 180
>gi|408382267|ref|ZP_11179812.1| exosome complex exonuclease Rrp41 [Methanobacterium formicicum DSM
3637]
gi|407814923|gb|EKF85545.1| exosome complex exonuclease Rrp41 [Methanobacterium formicicum DSM
3637]
Length = 249
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 83/202 (41%), Gaps = 50/202 (24%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR ++LRPL +L RA GSA +V
Sbjct: 26 RPDGRAFDELRPLKIEAGVLERADGSA------------------------------YVE 55
Query: 65 SGDTKVLAAVYGPKA-GTKKNENPEKA-----------SIEVIWKPRTGQIGKPEKEYEI 112
GD KVLAAVYGP+ ++ P A S++ +P G + EI
Sbjct: 56 IGDNKVLAAVYGPRELHVRRLLKPNMAILRCRYNMAPFSVDDRKRP-----GPDRRSVEI 110
Query: 113 --ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVA 170
I L L P +T + I+V+ +G I AA AL DAGIPM+ + V+
Sbjct: 111 SKITTEALNPAVFLEKFPRSTIDIFIEVIQAEGGTRCAGITAASVALADAGIPMRDM-VS 169
Query: 171 ICCCSAESGYCILDPTKLEEQK 192
C G I+D ++ E+++
Sbjct: 170 ACAAGKADGQVIMDLSEWEDKE 191
>gi|147919675|ref|YP_686581.1| putative exosome complex exonuclease 1 [Methanocella arvoryzae
MRE50]
gi|110621977|emb|CAJ37255.1| putative exosome complex exonuclease 1 [Methanocella arvoryzae
MRE50]
Length = 253
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 80/200 (40%), Gaps = 50/200 (25%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P LRP+ +L RA GS CY +
Sbjct: 13 RLDGRGPFDLRPIKFQAGVLKRADGS--------------------------CYLEF--- 43
Query: 65 SGDTKVLAAVYGPK------------AGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEI 112
G KV+AAVYGP+ A + N S+E +P G + EI
Sbjct: 44 -GGNKVMAAVYGPREVHPRHLQQASNAIVRYRYNMASFSVEERKRP-----GPDRRSIEI 97
Query: 113 --ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVA 170
+ + L+S+ + + P + + ++++ D INAA AL DAGIPMK L V+
Sbjct: 98 SKVSREALESVILKELYPRSAIDIFVEILQADAGTRVAGINAASVALADAGIPMKCL-VS 156
Query: 171 ICCCSAESGYCILDPTKLEE 190
C +LD K E+
Sbjct: 157 ACAVGKADDTLVLDLNKDED 176
>gi|126031138|pdb|2JE6|B Chain B, Structure Of A 9-Subunit Archaeal Exosome
gi|145579801|pdb|2JEA|B Chain B, Structure Of A 9-Subunit Archaeal Exosome Bound To Rna
gi|145579805|pdb|2JEB|B Chain B, Structure Of A 9-Subunit Archaeal Exosome Bound To Mn Ions
gi|407943802|pdb|4BA1|B Chain B, Archaeal Exosome (rrp4-rrp41(d182a)-rrp42) Bound To
Inorganic Phosphate
gi|407943805|pdb|4BA2|B Chain B, Archaeal Exosome (rrp4-rrp41(d182a)-rrp42) Bound To
Inorganic Phosphate
Length = 250
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 83/194 (42%), Gaps = 40/194 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P++LR + +L A GSA + G
Sbjct: 21 RTDGRKPDELRSIKIELGVLKNADGSAIFEMG---------------------------- 52
Query: 65 SGDTKVLAAVYGPKAGTKKNEN-PEKASIEVIW--------KPRTGQIGKPEKEYEIILK 115
+TK +AAVYGPK ++ + P++A + V + + + + E E +++
Sbjct: 53 --NTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTPFSTDERKNPAPSRREIELSKVIR 110
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
L+S ++ + P T V +++ D ++ AA AL DAGIPM+ L +
Sbjct: 111 EALESAVLVELFPRTAIDVFTEILQADAGSRLVSLMAASLALADAGIPMRDLIAGVAVGK 170
Query: 176 AESGYCILDPTKLE 189
A+ G ILD + E
Sbjct: 171 AD-GVIILDLNETE 183
>gi|146302862|ref|YP_001190178.1| exosome complex exonuclease Rrp41 [Metallosphaera sedula DSM 5348]
gi|145701112|gb|ABP94254.1| ribosomal RNA-processing protein RRP41/SKI6 [Metallosphaera sedula
DSM 5348]
Length = 245
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 89/195 (45%), Gaps = 40/195 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P++LRP+ +L A GS+ V
Sbjct: 16 RLDGRRPDELRPMKMEIGVLKNADGSS------------------------------LVE 45
Query: 65 SGDTKVLAAVYGPKAGTKKN-ENPEKASIEVIW--------KPRTGQIGKPEKEYEIILK 115
G+TK++AAVYGP+ ++ P +A++ V + + ++ + E E +++
Sbjct: 46 VGNTKIIAAVYGPREMHPRHLALPNRATLRVRYHMTPFSTDERKSPVPSRREIELSKVIR 105
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
L+S ++ P ++ V ++V+ D ++ AA A+VDAGIP+K + A+
Sbjct: 106 EALESSILVEQFPRSSIDVFMEVIQADAGTRLASLMAASLAVVDAGIPVKDVIAAVAVGK 165
Query: 176 AESGYCILDPTKLEE 190
A+ G +LD + E+
Sbjct: 166 AD-GVVVLDLNEPED 179
>gi|223477909|ref|YP_002582206.1| Exosome complex exonuclease 1 [Thermococcus sp. AM4]
gi|214033135|gb|EEB73963.1| Exosome complex exonuclease 1 [Thermococcus sp. AM4]
Length = 248
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 80/195 (41%), Gaps = 40/195 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +LR + +L A GSA + W
Sbjct: 16 RIDGRKKYELRKIHMEVGVLKNADGSA---------------------------YIEW-- 46
Query: 65 SGDTKVLAAVYGPKAGTKKN-ENPEKASIEVIWK------PRTGQIGKPEKEYEI--ILK 115
G K+LAAVYGP+ K+ + P+ A + V + + G + EI +++
Sbjct: 47 -GKNKILAAVYGPREIHPKHLQRPDTAVLRVRYNMAPFSVEERKKPGPDRRSVEISKVIR 105
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
L+ IL + P T V I+V+ D I AA AL DAG+PM+ L VA C
Sbjct: 106 GALEPALILEMFPRTVVDVFIEVLQADAGTRVAGITAASLALADAGVPMRDL-VAACAAG 164
Query: 176 AESGYCILDPTKLEE 190
G +LD K E+
Sbjct: 165 KIDGEIVLDLNKDED 179
>gi|257076444|ref|ZP_05570805.1| exosome complex exonuclease Rrp41 [Ferroplasma acidarmanus fer1]
Length = 240
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/275 (24%), Positives = 106/275 (38%), Gaps = 70/275 (25%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR+ N++RP+ ++ RA GSA F W
Sbjct: 14 RLDGRSLNEMRPIKIQTGVVERADGSA---------------------------FIEW-- 44
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKA-----------SIEVIWKP----RTGQIGKPEKE 109
G K++ AVY +A K +N ++A S+E +P RT +I K
Sbjct: 45 -GANKIIVAVYVREAYPKHAQNIDRAIVKARYNMSGYSVEERKRPGPDRRTMEISK---- 99
Query: 110 YEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAV 169
++ L S +L P V IQV+ D ++ A+ A+ DAG+PM+ L V
Sbjct: 100 ---VVSEALSSAIVLEKLPRAEIDVFIQVLEADAGTRIASLTASSVAVADAGVPMRDLVV 156
Query: 170 AICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSV 229
C G +LD +K E+ F P +IL P ++
Sbjct: 157 G-CTAGKADGKIVLDLSKDEDN----FGQADIPMAIL-------------PRTGKVVLLQ 198
Query: 230 THGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSK 264
G ++ +++ A ++S+ R +L SK
Sbjct: 199 LDGDVTEEEFNEATSMMMDAMPRISELQRNALMSK 233
>gi|294495471|ref|YP_003541964.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanohalophilus
mahii DSM 5219]
gi|292666470|gb|ADE36319.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanohalophilus
mahii DSM 5219]
Length = 297
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 80/202 (39%), Gaps = 54/202 (26%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +++RP+ +L RA GS CY W
Sbjct: 15 RLDGRRVDEIRPMKVEMGVLSRADGS--------------------------CYL-EW-- 45
Query: 65 SGDTKVLAAVYGPKA-----GTKKNE-------NPEKASIEVIWKP----RTGQIGKPEK 108
G+ KVLAAVYGP+ K NE N S+E +P R+ +I K
Sbjct: 46 -GNNKVLAAVYGPRELHPRRMQKPNEVLVRYKYNMASFSVEDRIRPGPSRRSTEISK--- 101
Query: 109 EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLA 168
+ + + + P V +V+ D AINAA AL DAGIPMK L
Sbjct: 102 ----VSGEAFEPVVMTQYYPGAVIDVFAEVLQADAGTRTAAINAATLALADAGIPMKGL- 156
Query: 169 VAICCCSAESGYCILDPTKLEE 190
V+ C G +LD K E+
Sbjct: 157 VSACAVGKVDGQLVLDLNKPED 178
>gi|435852006|ref|YP_007313592.1| archaeal exosome-like complex exonuclease 1 [Methanomethylovorans
hollandica DSM 15978]
gi|433662636|gb|AGB50062.1| archaeal exosome-like complex exonuclease 1 [Methanomethylovorans
hollandica DSM 15978]
Length = 327
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 84/202 (41%), Gaps = 54/202 (26%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +++RP+ +L RA GS CY W
Sbjct: 15 RLDGRAVDEMRPMTIEIGVLSRADGS--------------------------CYL-EW-- 45
Query: 65 SGDTKVLAAVYGPKA-GTKKNENPEKA-----------SIEVIWKP----RTGQIGKPEK 108
G K+LAAVYGP+ ++ + P++A S+E +P R+ +I K
Sbjct: 46 -GKNKILAAVYGPRELHPRRMQKPDEAIVRYRYNMAAFSVEDRARPGPSRRSIEISK--- 101
Query: 109 EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLA 168
+ + I + P+ V +V+ D AINAA AL DAGIPMK L
Sbjct: 102 ----VSRDAFAPIIMTKYYPSAVIDVFAEVLQADAGTRTAAINAASIALADAGIPMKGL- 156
Query: 169 VAICCCSAESGYCILDPTKLEE 190
++ C G +LD +K E+
Sbjct: 157 ISACAVGKVDGQLVLDLSKDED 178
>gi|148642302|ref|YP_001272815.1| exosome complex exonuclease Rrp41 [Methanobrevibacter smithii ATCC
35061]
gi|148551319|gb|ABQ86447.1| ribonuclease PH, Rph [Methanobrevibacter smithii ATCC 35061]
Length = 234
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 85/210 (40%), Gaps = 60/210 (28%)
Query: 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCY 61
E+ R DGR N+LRP+ +L RA GSA
Sbjct: 4 EMIREDGRKYNELRPIKIEAGVLERADGSA------------------------------ 33
Query: 62 WVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQI-----------------G 104
++ G K+L AVYGP+ ++ I + +P TG I G
Sbjct: 34 YLEVGGNKILVAVYGPR----------ESYIRRLLEPNTGVIRCRYNMAPFSVDDRKRPG 83
Query: 105 KPEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGI 162
+ EI I L+ +L P + + I+V+ +G I AA ALVDAGI
Sbjct: 84 PDRRSSEISKITADALRPALMLENYPRSMVDIYIEVIEAEGGTRCAGITAASVALVDAGI 143
Query: 163 PMKHLAVAICCCSAESGYCILDPTKLEEQK 192
PMK + V C + ILD +++E+++
Sbjct: 144 PMKDIVVG-CAAGKVNDEIILDLSEVEDKE 172
>gi|195116638|ref|XP_002002859.1| GI10716 [Drosophila mojavensis]
gi|193913434|gb|EDW12301.1| GI10716 [Drosophila mojavensis]
Length = 249
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 85/195 (43%), Gaps = 39/195 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P++LR + C + + GSA QG
Sbjct: 14 RLDGRRPHELRHIKCKLGVFEQPDGSAYMEQG---------------------------- 45
Query: 65 SGDTKVLAAVYGP-KAGTKKNENPE--------KASIEVIWKPRTGQIGKPEKEYEIILK 115
+TKVLAAVYGP +A KK E + +A+ + + + +E+++ L+
Sbjct: 46 --NTKVLAAVYGPHQAKGKKTEGNDLVINCQYSQATFSTSERKNRPRGDRKSQEFKMYLQ 103
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
+ L + + P + + ++V+ DGA ++NAA AL+DAGI + VA
Sbjct: 104 QALSAAIKSELYPRSQIDIYVEVLQADGANYAVSLNAATLALIDAGICLNEFVVACTASL 163
Query: 176 AESGYCILDPTKLEE 190
+ + + D + +EE
Sbjct: 164 SNANIPLTDISHIEE 178
>gi|52549121|gb|AAU82970.1| ribonuclease PH [uncultured archaeon GZfos24D9]
Length = 242
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 81/190 (42%), Gaps = 42/190 (22%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R GR +LRP+ +L RA GS CYF
Sbjct: 14 RLSGRGFEELRPIKIEVGLLKRADGS--------------------------CYFEL--- 44
Query: 65 SGDTKVLAAVYGPKAGTKKN-ENPEKASIEVIW---------KPRTGQIGKPEKEYEIIL 114
G+ K LAAVYGP+ ++ +N ++A ++ + + R G + +E ++
Sbjct: 45 -GNNKALAAVYGPREMHPRHFQNAKRAVVKYRYNMAPFSVDDRKRPGP-DRRSQEISMVS 102
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
++ L + + + P T V ++V+ D INAA AL DAGIPM+ L ++
Sbjct: 103 RKALDPVILRELYPKTAIEVYVEVLQSDAGTRTAGINAASVALADAGIPMRDLVSSVAIG 162
Query: 175 SAESGYCILD 184
+ G +LD
Sbjct: 163 KID-GEVVLD 171
>gi|305663898|ref|YP_003860186.1| ribosomal RNA-processing protein RRP41/SKI6 [Ignisphaera aggregans
DSM 17230]
gi|304378467|gb|ADM28306.1| ribosomal RNA-processing protein RRP41/SKI6 [Ignisphaera aggregans
DSM 17230]
Length = 242
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 83/196 (42%), Gaps = 41/196 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P LRP+ +L A GSA V
Sbjct: 14 RHDGRRPEDLRPIRMEVGVLKNADGSA------------------------------IVE 43
Query: 65 SGDTKVLAAVYGPKAGTKKNEN-PEKASIEVIWKPRT----GQIGKP-----EKEYEIIL 114
G T VLAAVYGP+ ++E ++A I ++ + G+ P E E ++
Sbjct: 44 IGKTVVLAAVYGPREVVPRHEEIVDRAVIRCRYRMLSFSTLGERKSPAPSRREIELSKVI 103
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
+ L+ I ++ P T + ++V++ +G I AA AL DAGIP+ L A+
Sbjct: 104 REALEPAIISSMYPRTAIDIFVEVINANGGTRTAGITAASLALADAGIPLADLVAAVAVG 163
Query: 175 SAESGYCILDPTKLEE 190
+ G +LD +LE+
Sbjct: 164 KID-GVIVLDLDELED 178
>gi|440804447|gb|ELR25324.1| exosome complex exonuclease rrp41, putative [Acanthamoeba
castellanii str. Neff]
Length = 205
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 72/161 (44%), Gaps = 51/161 (31%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P +LR + ++ +A GSA + QG
Sbjct: 13 RMDGRRPGELRRIEAKMGVVSKADGSALFRQG---------------------------- 44
Query: 65 SGDTKVLAAVYGPK-----AGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQ 119
+T+VLA +YGPK +G +K++ +K ++E+ +++++T +
Sbjct: 45 --NTQVLATIYGPKEAGFASGERKSKKTDKKTVEL----------------GMLIRQTFE 86
Query: 120 SICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDA 160
S+ + + P + + +QV+ DG L AINA A++DA
Sbjct: 87 SVVMTALYPRSQIDIYVQVLQSDGGALSAAINATTLAMIDA 127
>gi|70606425|ref|YP_255295.1| exosome complex exonuclease Rrp41 [Sulfolobus acidocaldarius DSM
639]
gi|449066637|ref|YP_007433719.1| exosome complex exonuclease Rrp41 [Sulfolobus acidocaldarius N8]
gi|449068911|ref|YP_007435992.1| exosome complex exonuclease Rrp41 [Sulfolobus acidocaldarius
Ron12/I]
gi|76364178|sp|Q4JB27.1|ECX1_SULAC RecName: Full=Probable exosome complex exonuclease 1
gi|68567073|gb|AAY80002.1| ribonuclease PH [Sulfolobus acidocaldarius DSM 639]
gi|449035145|gb|AGE70571.1| exosome complex exonuclease Rrp41 [Sulfolobus acidocaldarius N8]
gi|449037419|gb|AGE72844.1| exosome complex exonuclease Rrp41 [Sulfolobus acidocaldarius
Ron12/I]
Length = 243
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 117/269 (43%), Gaps = 57/269 (21%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR ++LRP+ +L A GSA + G
Sbjct: 16 RTDGRKLDELRPIKIELGVLKNADGSAIFEMG---------------------------- 47
Query: 65 SGDTKVLAAVYGPKAGTKKN-ENPEKASIEVIW--------KPRTGQIGKPEKEYEIILK 115
+TKV+AAVYGPK ++ P+KAS+ V + + + + E E +++
Sbjct: 48 --NTKVIAAVYGPKEMHPRHLALPDKASLRVRYHMTPFSTDERKNPAPSRREIELSKVIR 105
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
L+S +L + P T + ++V+ D A+ AA AL DAGIPM+ L +
Sbjct: 106 EALESTILLNLFPRTVIDIFMEVLQADAGTRLVALMAASMALADAGIPMRDLIAGVAVGK 165
Query: 176 AESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMS 235
A+ G +LD E++ M G A + ++VLP SL Q ++ +G M+
Sbjct: 166 AD-GSLVLDLN--EQEDMWGEA-----DMPIAVLP---SLGQ-------VVLLQLNGFMT 207
Query: 236 VDDYFHCLERGRAASAKLSDFLRRSLQSK 264
D++ E + + + + +L++K
Sbjct: 208 PDEFRRAFELAQKGISSIYALQKEALKNK 236
>gi|297840733|ref|XP_002888248.1| hypothetical protein ARALYDRAFT_475442 [Arabidopsis lyrata subsp.
lyrata]
gi|297334089|gb|EFH64507.1| hypothetical protein ARALYDRAFT_475442 [Arabidopsis lyrata subsp.
lyrata]
Length = 140
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/62 (54%), Positives = 44/62 (70%), Gaps = 5/62 (8%)
Query: 103 IGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGI 162
+ K E+EYE ILKRTLQSIC+LT+ NTTTSVIIQVVHD G +++ C+ + +
Sbjct: 67 LRKVEREYETILKRTLQSICVLTVVSNTTTSVIIQVVHDGG-----SVSFLCSLHLGKHL 121
Query: 163 PM 164
PM
Sbjct: 122 PM 123
>gi|397579612|gb|EJK51273.1| hypothetical protein THAOC_29565, partial [Thalassiosira oceanica]
Length = 340
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 73/135 (54%), Gaps = 15/135 (11%)
Query: 54 TSKCYFCYWVGSGDTKVLAAVYGPKAGTKKNEN-PEKASIEVIWK------PRTGQIGKP 106
++ C V G TKVL + GP T+++E P++AS+EV+ + P + P
Sbjct: 104 SAGCSGSAMVTLGLTKVLCSSGGPCDATRRSEELPDRASLEVLVRAAPFAPPGDRRNVNP 163
Query: 107 EKEYEII-----LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAG 161
+ ++ L+R L + +L + P + SV + V+ DDG L +INAA AL+DAG
Sbjct: 164 TTDRRLVEASHLLQRALSASILLHLFPRSKISVTVMVLADDGGRLEASINAATLALMDAG 223
Query: 162 IPMKHLAVAICCCSA 176
IP++ + +C CSA
Sbjct: 224 IPLRDM---VCACSA 235
>gi|167044148|gb|ABZ08830.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
crenarchaeote HF4000_APKG5E24]
Length = 245
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 67/273 (24%), Positives = 110/273 (40%), Gaps = 65/273 (23%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R+DGR N+ R + +L A GSA ++
Sbjct: 17 RSDGRKVNETRKVTIKVGVLKNADGSA------------------------------YIE 46
Query: 65 SGDTKVLAAVYGPK-AGTKKNENPEKASIEVIWKPRTGQIGK------PEKEYEI--ILK 115
G K+LA V+GP+ K NP+ + V + + + +E EI +LK
Sbjct: 47 FGGNKILAGVFGPRDVHPKHMSNPDTGILRVRYHMEPFSVSERKNPAPSRREIEISKVLK 106
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
L+ IL P T V ++V+ DG A++AA AL DAGIPM+ + +C C+
Sbjct: 107 EALEPAVILEKFPRTAIDVYLEVLQADGGTRCAALDAASVALADAGIPMRDM---VCSCA 163
Query: 176 A--ESGYCILDPTKLEEQKMKGFAYLVF-PNSILSVLPEGSSLVQGEPMEHGIITSVT-H 231
A + ILD E+Q + + + PN G IT +
Sbjct: 164 AGKAADTLILDVNNEEDQAGQADMPIGYMPN-------------------FGKITLLQLD 204
Query: 232 GAMSVDDYFHCLERGRAASAKLSDFLRRSLQSK 264
G ++ D++ C+E G ++ + + +L+ K
Sbjct: 205 GVLTTDEFKKCIELGIEGCKQVYEIQKNALREK 237
>gi|229584881|ref|YP_002843383.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus M.16.27]
gi|228019931|gb|ACP55338.1| exosome complex exonuclease 1 [Sulfolobus islandicus M.16.27]
Length = 245
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 84/195 (43%), Gaps = 40/195 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P++LR + +L A GSA + G
Sbjct: 16 RIDGRKPDELRSIKIELGVLKNADGSAIFEMG---------------------------- 47
Query: 65 SGDTKVLAAVYGPKAGTKKNEN-PEKASIEVIW--------KPRTGQIGKPEKEYEIILK 115
+TK +AAVYGPK ++ + P++A + V + + + + E E +++
Sbjct: 48 --NTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTPFSTDERKNPAPSRREIELSKVIR 105
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
L+S ++ + P T V +++ D ++ AA AL DAGIPM+ L +
Sbjct: 106 EALESAVLVELFPRTAIDVFTEILQADAGSRLVSLMAASLALADAGIPMRDLIAGVAVGK 165
Query: 176 AESGYCILDPTKLEE 190
A+ G +LD + E+
Sbjct: 166 AD-GVIVLDLNEAED 179
>gi|428181007|gb|EKX49872.1| hypothetical protein GUITHDRAFT_104267 [Guillardia theta CCMP2712]
Length = 482
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 95/219 (43%), Gaps = 54/219 (24%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR PN+LR + L A GSA F+H
Sbjct: 13 RIDGRRPNELRKVVIKHGNLQNATGSAI------------FHH----------------- 43
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASI---EVIWKP-------RTGQIGKPEKEYEIIL 114
G+TK++A V GP+ T +++ ++ VI P + + + E E ++
Sbjct: 44 -GNTKIVATVCGPRECTSRSKELHDRAVVTCSVIVSPSAYSHRRKRNRGDRVVAELESLV 102
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
++T + + +I P + + +++V DG + C +NA AL+DAG+P+K +C C
Sbjct: 103 RQTFEELIFTSIFPRSQIDISVEIVQADGPVRACVVNAVSMALIDAGLPIKDF---LCAC 159
Query: 175 SAESGYC---ILDPTKLEEQKMKGFAYLVFPNSILSVLP 210
E GY +L EE+ +G P+ +S +P
Sbjct: 160 --EVGYIDGQLLLDMNGEEESARG------PDLYVSYMP 190
>gi|288869794|ref|ZP_06409500.1| exosome complex exonuclease 1 [Methanobrevibacter smithii DSM 2374]
gi|288860272|gb|EFC92570.1| exosome complex exonuclease 1 [Methanobrevibacter smithii DSM 2374]
Length = 234
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 85/210 (40%), Gaps = 60/210 (28%)
Query: 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCY 61
E+ R DGR N+LRP+ +L RA GSA
Sbjct: 4 EMIREDGRKYNELRPIKIEAGVLERADGSA------------------------------ 33
Query: 62 WVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQI-----------------G 104
++ G K+L AVYGP+ ++ I + +P TG I G
Sbjct: 34 YLEVGGNKILVAVYGPR----------ESYIRRLLEPNTGVIRCRYNMAPFSVDDRKRPG 83
Query: 105 KPEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGI 162
+ EI I L+ +L P + + I+V+ +G I AA ALVDAGI
Sbjct: 84 PDRRSSEISKITADALRPALMLENYPRSMVDIYIEVIEAEGGTRCAGITAASVALVDAGI 143
Query: 163 PMKHLAVAICCCSAESGYCILDPTKLEEQK 192
PMK + V C + +LD +++E+++
Sbjct: 144 PMKDIVVG-CAAGKVNDKIVLDLSEVEDKE 172
>gi|222444527|ref|ZP_03607042.1| hypothetical protein METSMIALI_00139 [Methanobrevibacter smithii
DSM 2375]
gi|222434092|gb|EEE41257.1| exosome complex exonuclease 1 [Methanobrevibacter smithii DSM 2375]
Length = 233
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 85/210 (40%), Gaps = 60/210 (28%)
Query: 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCY 61
E+ R DGR N+LRP+ +L RA GSA
Sbjct: 3 EMIREDGRKYNELRPIKIEAGVLERADGSA------------------------------ 32
Query: 62 WVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQI-----------------G 104
++ G K+L AVYGP+ ++ I + +P TG I G
Sbjct: 33 YLEVGGNKILVAVYGPR----------ESYIRRLLEPNTGVIRCRYNMAPFSVDDRKRPG 82
Query: 105 KPEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGI 162
+ EI I L+ +L P + + I+V+ +G I AA ALVDAGI
Sbjct: 83 PDRRSSEISKITADALRPALMLENYPRSMVDIYIEVIEAEGGTRCAGITAASVALVDAGI 142
Query: 163 PMKHLAVAICCCSAESGYCILDPTKLEEQK 192
PMK + V C + +LD +++E+++
Sbjct: 143 PMKDIVVG-CAAGKVNDKIVLDLSEVEDKE 171
>gi|167044510|gb|ABZ09185.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
crenarchaeote HF4000_APKG6J21]
Length = 245
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 67/275 (24%), Positives = 109/275 (39%), Gaps = 69/275 (25%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R+DGR N+ R + +L A GSA ++
Sbjct: 17 RSDGRKVNETRKVTIKVGVLKNADGSA------------------------------YIE 46
Query: 65 SGDTKVLAAVYGPK-AGTKKNENPEKASIEV--------IWKPRTGQIGKPEKEYEIILK 115
G K+LA V+GP+ K NP+ + V + + + + E E +LK
Sbjct: 47 FGGNKILAGVFGPRDVHPKHMSNPDTGILRVRYHMAPFSVSERKNPAPSRREIEISKVLK 106
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
L+ IL P T V ++V+ DG A++AA AL DAGIPM+ + +C C+
Sbjct: 107 EALEPAVILEKFPRTAIDVYLEVLQADGGTRCAALDAASVALADAGIPMRDM---VCSCA 163
Query: 176 AE--SGYCILDPTKLEEQKMKG---FAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVT 230
A + ILD E+Q + Y+ PN G IT +
Sbjct: 164 AGKVADALILDVNNEEDQAGQADMPIGYM--PN-------------------FGKITLLQ 202
Query: 231 -HGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSK 264
G ++ D++ C+E G ++ + + +L+ K
Sbjct: 203 LDGVLTTDEFKKCIELGIEGCKQVYEIQKNALREK 237
>gi|154419828|ref|XP_001582930.1| 3' exoribonuclease family, domain 1 containing protein [Trichomonas
vaginalis G3]
gi|121917168|gb|EAY21944.1| 3' exoribonuclease family, domain 1 containing protein [Trichomonas
vaginalis G3]
Length = 241
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 90/219 (41%), Gaps = 46/219 (21%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR PN++R + + GS+ HF +
Sbjct: 11 RIDGRPPNEMRLVEAKIGTIPGCTGSS---------------HFKI-------------- 41
Query: 65 SGDTKVLAAVYGPKAGTKKNENP-------EKASIEVIWKPRTGQIGKPEKEYEIILKRT 117
G T+V+A ++GP+ + +N E A + + + +E E+I+KRT
Sbjct: 42 -GQTEVIAQIFGPR-DNRSGDNAAEIRVTFEYADFAKVPHASDTSMTRRGRESEVIMKRT 99
Query: 118 LQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAE 177
+ + P++ + I V+ DDG+ AINAA AL+DAGIPM V++ +
Sbjct: 100 FEEAIKRELFPHSKILIAITVIQDDGSCQSAAINAATLALIDAGIPMFDFVVSMTVALYD 159
Query: 178 SGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLV 216
C LD + E FP +S+ P S ++
Sbjct: 160 D-KCFLDAGRAESNAR-------FPVLEVSIFPSTSEIL 190
>gi|385775987|ref|YP_005648555.1| exosome complex exonuclease 1 [Sulfolobus islandicus REY15A]
gi|323474735|gb|ADX85341.1| exosome complex exonuclease 1 [Sulfolobus islandicus REY15A]
Length = 245
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 84/195 (43%), Gaps = 40/195 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P++LR + +L A GSA + G
Sbjct: 16 RIDGRKPDELRSIKIELGVLKNADGSAIFEMG---------------------------- 47
Query: 65 SGDTKVLAAVYGPKAGTKKNEN-PEKASIEVIW--------KPRTGQIGKPEKEYEIILK 115
+TK +AAVYGPK ++ + P++A + V + + + + E E +++
Sbjct: 48 --NTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTPFSTDERKNPAPSRREIELSKVIR 105
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
L+S ++ + P T V +++ D ++ AA AL DAGIPM+ L +
Sbjct: 106 EALESAVLVELFPRTAIDVFTEILQADAGSRLVSLMAASLALADAGIPMRDLIAGVAVGK 165
Query: 176 AESGYCILDPTKLEE 190
A+ G +LD + E+
Sbjct: 166 AD-GVIVLDLNEPED 179
>gi|167044981|gb|ABZ09646.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
crenarchaeote HF4000_APKG8G2]
Length = 245
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 64/271 (23%), Positives = 111/271 (40%), Gaps = 61/271 (22%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R+DGR N+ R + +L A GSA ++
Sbjct: 17 RSDGRKVNETRKVTIKVGVLKNADGSA------------------------------YIE 46
Query: 65 SGDTKVLAAVYGPK-AGTKKNENPEKASIEVIWKPRTGQIGK------PEKEYEI--ILK 115
G K+LA V+GP+ K NP+ + V + + + +E EI +LK
Sbjct: 47 FGGNKILAGVFGPRDVHPKHMSNPDTGILRVRYHMEPFSVSERKNPAPSRREIEISKVLK 106
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
L+ IL P T V ++V+ DG A++AA AL DAGIPM+ + +C C+
Sbjct: 107 EALEPAVILEKFPRTAIDVYLEVLQADGGSRCAALDAASVALADAGIPMRDM---VCSCA 163
Query: 176 A--ESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGA 233
A + ILD E+Q + + + ++ + +L+Q G
Sbjct: 164 AGKAADALILDVNNEEDQAGQADMPIGYMPNLGKI-----TLLQ------------LDGV 206
Query: 234 MSVDDYFHCLERGRAASAKLSDFLRRSLQSK 264
++ D++ C+E G ++ + + +L+ K
Sbjct: 207 LTTDEFKKCIELGLEGCKQVYEIQKNALREK 237
>gi|255644780|gb|ACU22892.1| unknown [Glycine max]
Length = 190
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 95/222 (42%), Gaps = 58/222 (26%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P ++R + + +A GSA + G
Sbjct: 10 RLDGRRPMEMRQIRAEIGAVSKADGSAIFEMG---------------------------- 41
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEK----------ASIEVIWKPRTGQIGKPEKEYEIIL 114
+TKV+AAVYGP+ +N+ A+ + R + + E +++
Sbjct: 42 --NTKVIAAVYGPREVQNRNQQISSHALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVI 99
Query: 115 KRTLQSICILT-INPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
++T+++ CILT + P + + +QV+ DG INAA AL DAGIPM+ L +
Sbjct: 100 RQTMEA-CILTHLLPRSQIDIYVQVLQADGGTRSACINAATLALADAGIPMRDL---VTS 155
Query: 174 CSAESGYC----ILDPTKLEEQKMKGFAYLVFPNSILSVLPE 211
CSA GY +LD +E+ P+ L +LP+
Sbjct: 156 CSA--GYLNSTPLLDLNYVEDSAGG-------PDVTLGILPK 188
>gi|149236726|ref|XP_001524240.1| exosome complex exonuclease RRP41 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146451775|gb|EDK46031.1| exosome complex exonuclease RRP41 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 244
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 85/199 (42%), Gaps = 40/199 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR N+LR C R + + S G +++
Sbjct: 13 RIDGRRWNELRRFEC------RINTHPNSSDGSSYVE----------------------- 43
Query: 65 SGDTKVLAAVYGPKAGTKKNE-NPEKASIEV---------IWKPRTGQIGKPEKEYEIIL 114
G+TKV+ V GP T + + N ++A++EV + + + K E L
Sbjct: 44 QGNTKVICTVIGPMEPTSRAQMNQDRANVEVNLTIANFSTFERKKRSKTEKRLVELRTTL 103
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
+RT + + +L + P T ++ +QV++ DG +L N+ AL+DAGI M +I C
Sbjct: 104 ERTFEQLILLHLYPRTNITINVQVLNQDGGMLAAVTNSITLALMDAGIAMYDYVSSISCG 163
Query: 175 SAESGYCILDPTKLEEQKM 193
+ +LD LEE M
Sbjct: 164 LHDQS-PLLDLNNLEENDM 181
>gi|298709840|emb|CBJ26180.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 244
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 76/165 (46%), Gaps = 18/165 (10%)
Query: 62 WVGSGDTKVLAAVYGPKAGTKKNENPEKASI---EVIWKPRTGQIGKPEK-------EYE 111
++ G TK++A V GP+ T++ + I E P +G K + E
Sbjct: 41 YLEMGQTKIIAIVKGPREVTRRQDRKYDTGIVNCEYNVAPFSGSERKKRRPTERKGMEIA 100
Query: 112 IILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAI 171
+ +K + +L + P T + + V+ DG +LP INAA ALVDAG+ M L VA
Sbjct: 101 LAVKEVFEGAIMLHLYPRTQIDIYLHVIQSDGGVLPVGINAASLALVDAGVAMSDLVVA- 159
Query: 172 CCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLV 216
C G ++D + EQ + G P ++VLPE L+
Sbjct: 160 CSAGYLDGMPVMDLNYV-EQALGG------PYLPVAVLPEKDKLL 197
>gi|227830374|ref|YP_002832154.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus L.S.2.15]
gi|229579192|ref|YP_002837590.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus Y.G.57.14]
gi|229582056|ref|YP_002840455.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus Y.N.15.51]
gi|284997880|ref|YP_003419647.1| exosome complex exonuclease 1 [Sulfolobus islandicus L.D.8.5]
gi|227456822|gb|ACP35509.1| exosome complex exonuclease 1 [Sulfolobus islandicus L.S.2.15]
gi|228009906|gb|ACP45668.1| exosome complex exonuclease 1 [Sulfolobus islandicus Y.G.57.14]
gi|228012772|gb|ACP48533.1| exosome complex exonuclease 1 [Sulfolobus islandicus Y.N.15.51]
gi|284445775|gb|ADB87277.1| exosome complex exonuclease 1 [Sulfolobus islandicus L.D.8.5]
Length = 245
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 84/195 (43%), Gaps = 40/195 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P++LR + +L A GSA + G
Sbjct: 16 RIDGRKPDELRSIKIELGVLKNADGSAIFEMG---------------------------- 47
Query: 65 SGDTKVLAAVYGPKAGTKKNEN-PEKASIEVIW--------KPRTGQIGKPEKEYEIILK 115
+TK +AAVYGPK ++ + P++A + V + + + + E E +++
Sbjct: 48 --NTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTPFSTDERKNPAPSRREIELSKVIR 105
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
L+S ++ + P T V +++ D ++ AA AL DAGIPM+ L +
Sbjct: 106 EALESAVLVELFPRTAIDVFTEILQADAGSRLVSLMAASLALADAGIPMRDLIAGVAVGK 165
Query: 176 AESGYCILDPTKLEE 190
A+ G +LD + E+
Sbjct: 166 AD-GVIVLDLNEPED 179
>gi|52548652|gb|AAU82501.1| ribonuclease PH [uncultured archaeon GZfos18B6]
Length = 242
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 80/190 (42%), Gaps = 42/190 (22%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R GR +LRP+ +L RA GS CYF
Sbjct: 14 RLSGRGFEELRPIKIDVGVLKRADGS--------------------------CYFEL--- 44
Query: 65 SGDTKVLAAVYGPKAGTKKN-ENPEKASIEVIW---------KPRTGQIGKPEKEYEIIL 114
G+ K +AAVYGP+ ++ +N + A ++ + + R G + +E ++
Sbjct: 45 -GNNKAIAAVYGPREMHPRHFQNAKMAVVKYRYNMAPFSVDDRKRPGP-DRRSQEISMVS 102
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
++ L + + + P T V ++V+ D INAA AL DAGIPMK L ++
Sbjct: 103 RKALDPVILRELYPKTAIEVYVEVLQSDAGTRTAGINAASVALADAGIPMKDLVSSVAIG 162
Query: 175 SAESGYCILD 184
+ G +LD
Sbjct: 163 KID-GEVVLD 171
>gi|52550028|gb|AAU83877.1| ribonuclease PH [uncultured archaeon GZfos34H10]
Length = 242
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 80/190 (42%), Gaps = 42/190 (22%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R GR +LRP+ +L RA GS CYF
Sbjct: 14 RLSGRGFEELRPIKIEVGVLKRADGS--------------------------CYFEL--- 44
Query: 65 SGDTKVLAAVYGPKAGTKKN-ENPEKASIEVIW---------KPRTGQIGKPEKEYEIIL 114
G+ KV+A VYGP+ ++ +N + A ++ + + R G + +E ++
Sbjct: 45 -GNNKVIAGVYGPREMHPRHFQNAKMAVVKYRYNMAPFSVDDRKRPGP-DRRSQEISMVS 102
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
++ L + + + P T V ++V+ D INAA AL DAGIPM+ L ++
Sbjct: 103 RKALDPVILRELYPKTAIEVYVEVLQSDAGTRTAGINAASVALADAGIPMRDLVSSVAIG 162
Query: 175 SAESGYCILD 184
+ G +LD
Sbjct: 163 KID-GEVVLD 171
>gi|337283874|ref|YP_004623348.1| exosome complex exonuclease Rrp41 [Pyrococcus yayanosii CH1]
gi|334899808|gb|AEH24076.1| exosome complex exonuclease Rrp41 [Pyrococcus yayanosii CH1]
Length = 249
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 82/195 (42%), Gaps = 40/195 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +LRP+ +L A GSA + W
Sbjct: 17 RIDGRKKYELRPIKMEVGVLKNADGSA---------------------------YVEW-- 47
Query: 65 SGDTKVLAAVYGPKAGTKKN-ENPEKASIEVIWK------PRTGQIGKPEKEYEI--ILK 115
G K+LAAVYGP+ K+ + P++A + V + + G + EI ++K
Sbjct: 48 -GKNKILAAVYGPREIHPKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSIEISKVIK 106
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
L+ +L + P T + I+V+ D I AA AL DAGIPMK L VA C
Sbjct: 107 GALEPALLLELFPRTAIDIFIEVLQADAGTRVAGITAASLALADAGIPMKDL-VAACAAG 165
Query: 176 AESGYCILDPTKLEE 190
G +LD K E+
Sbjct: 166 KIEGQIVLDLNKEED 180
>gi|227827677|ref|YP_002829457.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus M.14.25]
gi|238619848|ref|YP_002914674.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus M.16.4]
gi|227459473|gb|ACP38159.1| exosome complex exonuclease 1 [Sulfolobus islandicus M.14.25]
gi|238380918|gb|ACR42006.1| exosome complex exonuclease 1 [Sulfolobus islandicus M.16.4]
Length = 245
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 84/195 (43%), Gaps = 40/195 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P++LR + +L A GSA + G
Sbjct: 16 RIDGRKPDELRSIKIELGVLKNADGSAIFEMG---------------------------- 47
Query: 65 SGDTKVLAAVYGPKAGTKKNEN-PEKASIEVIW--------KPRTGQIGKPEKEYEIILK 115
+TK +AAVYGPK ++ + P++A + V + + + + E E +++
Sbjct: 48 --NTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTPFSTDERKNPAPSRREIELSKVIR 105
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
L+S ++ + P T V +++ D ++ AA AL DAGIPM+ L +
Sbjct: 106 EALESAVLVELFPRTAIDVFTEILQADAGSRLVSLMAASLALADAGIPMRDLIAGVAVGK 165
Query: 176 AESGYCILDPTKLEE 190
A+ G +LD + E+
Sbjct: 166 AD-GVIVLDLNEPED 179
>gi|356562860|ref|XP_003549686.1| PREDICTED: exosome complex component RRP41-like [Glycine max]
Length = 241
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 95/222 (42%), Gaps = 58/222 (26%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P ++R + + +A GSA + G
Sbjct: 10 RLDGRRPMEMRQIRAEIGAVSKADGSAIFEMG---------------------------- 41
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEK----------ASIEVIWKPRTGQIGKPEKEYEIIL 114
+TKV+AAVYGP+ +N+ A+ + R + + E +++
Sbjct: 42 --NTKVIAAVYGPREVQNRNQQISSHALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVI 99
Query: 115 KRTLQSICILT-INPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
++T+++ CILT + P + + +QV+ DG INAA AL DAGIPM+ L +
Sbjct: 100 RQTMEA-CILTHLLPRSQIDIYVQVLQADGGTRSACINAATLALADAGIPMRDL---VTS 155
Query: 174 CSAESGYC----ILDPTKLEEQKMKGFAYLVFPNSILSVLPE 211
CSA GY +LD +E+ P+ L +LP+
Sbjct: 156 CSA--GYLNSTPLLDLNYVEDSAGG-------PDVTLGILPK 188
>gi|16183595|gb|AAL13710.1| GM01970p [Drosophila melanogaster]
Length = 233
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 79/162 (48%), Gaps = 3/162 (1%)
Query: 55 SKCYFCYWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIIL 114
S+C G T ++ AV GP +N + + + +E ++P+ G ++ E +
Sbjct: 25 SRCDGSVMYSQGATGLIGAVLGPIEVKTQNLSIDGSYLECNYRPKAGLPQVTDRIREAAI 84
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
+ L+ + +P + SV IQ + D G++ CA+N AC A++ G+P+K+ A+
Sbjct: 85 RDVLELALLSEAHPRSKMSVQIQELEDRGSIDACAVNCACLAMLIGGLPLKYSFAAVHAI 144
Query: 175 SAESGYCILDPTKLEEQKMKG---FAYLVFPNSILSVLPEGS 213
E G +LDP + E + FA+ ++L + +GS
Sbjct: 145 INEQGEYVLDPDQSETLHQRASFTFAFDSVEGNLLLIQTKGS 186
>gi|24645688|ref|NP_650001.2| Rrp46 [Drosophila melanogaster]
gi|23170911|gb|AAF54530.3| Rrp46 [Drosophila melanogaster]
gi|212287964|gb|ACJ23457.1| FI06805p [Drosophila melanogaster]
Length = 233
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 79/162 (48%), Gaps = 3/162 (1%)
Query: 55 SKCYFCYWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIIL 114
S+C G T ++ AV GP +N + + + +E ++P+ G ++ E +
Sbjct: 25 SRCDGSVMYSQGATGLIGAVLGPIEVKTQNLSIDGSYLECNYRPKAGLPQVTDRIREAAI 84
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
+ L+ + +P + SV IQ + D G++ CA+N AC A++ G+P+K+ A+
Sbjct: 85 RDVLELALLSEAHPRSKMSVQIQELEDRGSIDACAVNCACLAMLIGGLPLKYSFAAVHAI 144
Query: 175 SAESGYCILDPTKLEEQKMKG---FAYLVFPNSILSVLPEGS 213
E G +LDP + E + FA+ ++L + +GS
Sbjct: 145 INEQGEYVLDPDQSETLHQRASFTFAFDSVEGNLLLIQTKGS 186
>gi|62858563|ref|NP_001017016.1| exosome complex component MTR3 [Xenopus (Silurana) tropicalis]
gi|123892820|sp|Q28F19.1|EXOS6_XENTR RecName: Full=Exosome complex component MTR3; AltName: Full=Exosome
component 6; AltName: Full=mRNA transport regulator 3
homolog
gi|89269970|emb|CAJ81566.1| exosome component 6 [Xenopus (Silurana) tropicalis]
gi|134024282|gb|AAI36081.1| rarg protein [Xenopus (Silurana) tropicalis]
Length = 270
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 94/220 (42%), Gaps = 42/220 (19%)
Query: 8 GRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGD 67
GR P++ RP+ +L +A GSA +++ GSG
Sbjct: 34 GRGPSEPRPVFVRAGLLSQAKGSA-------YLEA---------------------GSGG 65
Query: 68 TKVLAAVYGPKA---GTKKNENPEKASIEVIWKP--RTGQ------IGKPEKEYEIILKR 116
TKVL AV+GP+ G ++ E + ++ W P R G G ++ + L+
Sbjct: 66 TKVLCAVHGPRERGMGGERAETRGRLLCDLRWAPFSRRGPWSGSCPAGPSPRQAGLQLQE 125
Query: 117 TLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSA 176
+L+ L P V + V+ D G+ LP A++ A AL DAGI M LA+
Sbjct: 126 SLEPAVRLDRYPRAEVIVWVLVLEDRGSALPAAVSCASLALADAGIEMFDLALGCGLSRG 185
Query: 177 ESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLV 216
G +LDP EE+ G + S+L L + S L+
Sbjct: 186 PGGELLLDPDDDEEEAGSGGTMSL---SLLPTLNQVSGLI 222
>gi|167537032|ref|XP_001750186.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163771348|gb|EDQ85016.1| predicted protein [Monosiga brevicollis MX1]
Length = 1336
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 81/167 (48%), Gaps = 22/167 (13%)
Query: 62 WVGSGDTKVLAAVYGPKAGTKKNENPEK----------ASIEVIWKPRTGQIGKPEKEYE 111
+V G+TKVLA + GP + N AS + ++ + E
Sbjct: 58 YVEQGNTKVLAIINGPHDSDARGPNASGHLTVSCEFIYASFSTDQRRARSRLDRKLAEQG 117
Query: 112 IILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAI 171
+ RTL+S+ + + +T ++ +QV+ DG +L AINAA A++DAG+PMK +
Sbjct: 118 TRIARTLESVVMGQLLSRSTINLNVQVLQADGGVLATAINAASLAMMDAGVPMKDF---L 174
Query: 172 CCCSAE--SGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLV 216
C C+A G +LD T E +G P+ ++V+P +++V
Sbjct: 175 CACNAGVLEGVAVLD-TNHSEALARG------PDLTVAVMPRTNTIV 214
>gi|410721458|ref|ZP_11360793.1| archaeal exosome-like complex exonuclease 1 [Methanobacterium sp.
Maddingley MBC34]
gi|410598915|gb|EKQ53478.1| archaeal exosome-like complex exonuclease 1 [Methanobacterium sp.
Maddingley MBC34]
Length = 249
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 83/202 (41%), Gaps = 50/202 (24%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR ++LRPL +L RA GS+ +V
Sbjct: 26 RPDGRAFDELRPLKIEAGVLERADGSS------------------------------YVE 55
Query: 65 SGDTKVLAAVYGPKA-GTKKNENPEKA-----------SIEVIWKPRTGQIGKPEKEYEI 112
GD KVLAAVYGP+ ++ P A S++ +P G + EI
Sbjct: 56 IGDNKVLAAVYGPRELHVRRLLKPNMAILRCRYNMAPFSVDDRKRP-----GPDRRSVEI 110
Query: 113 --ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVA 170
I L L P +T + I+V+ +G I AA AL DAGIPM+ + V+
Sbjct: 111 SKITTEALNPAVFLEKFPRSTIDIFIEVLQAEGGTRCAGITAASVALADAGIPMRDM-VS 169
Query: 171 ICCCSAESGYCILDPTKLEEQK 192
C G I+D ++ E+++
Sbjct: 170 ACAAGKADGQVIMDLSEGEDKE 191
>gi|157133589|ref|XP_001656263.1| exosome complex exonuclease RRP41, putative [Aedes aegypti]
gi|157134369|ref|XP_001663263.1| exosome complex exonuclease RRP41, putative [Aedes aegypti]
gi|108870517|gb|EAT34742.1| AAEL013045-PA [Aedes aegypti]
gi|108870766|gb|EAT34991.1| AAEL012812-PA [Aedes aegypti]
Length = 245
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 80/195 (41%), Gaps = 40/195 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR N+LR + C + + GSA ++
Sbjct: 10 RLDGRRANELRRIQCKLGVFSQPDGSA------------------------------YIE 39
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIG---------KPEKEYEIILK 115
G+TKVLAAVYGP K + E+ + + T G + +E I L+
Sbjct: 40 QGNTKVLAAVYGPHQAPAKKSSHEEVIVNCQYSMATFSTGERKRRPRGDRKSQEMTIHLQ 99
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
+ L + + P + V I+V+ DG ++NAA AL+DAGI +K A C S
Sbjct: 100 QALSAAIKTELYPKSQIDVYIEVLMADGGNYCASVNAATLALIDAGICLKEYVCA-CTAS 158
Query: 176 AESGYCILDPTKLEE 190
++D + LEE
Sbjct: 159 LAGKIPLMDVSNLEE 173
>gi|385773349|ref|YP_005645915.1| exosome complex exonuclease 1 [Sulfolobus islandicus HVE10/4]
gi|323477463|gb|ADX82701.1| exosome complex exonuclease 1 [Sulfolobus islandicus HVE10/4]
Length = 245
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 83/195 (42%), Gaps = 40/195 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P +LR + +L A GSA + G
Sbjct: 16 RIDGRKPEELRSIKIELGVLKNADGSAIFEMG---------------------------- 47
Query: 65 SGDTKVLAAVYGPKAGTKKNEN-PEKASIEVIW--------KPRTGQIGKPEKEYEIILK 115
+TK +AAVYGPK ++ + P++A + V + + + + E E +++
Sbjct: 48 --NTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTPFSTDERKNPAPSRREIELSKVIR 105
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
L+S ++ + P T V +++ D ++ AA AL DAGIPM+ L +
Sbjct: 106 EALESAVLVELFPRTAIDVFTEILQADAGSRLVSLMAASLALADAGIPMRDLIAGVAVGK 165
Query: 176 AESGYCILDPTKLEE 190
A+ G +LD + E+
Sbjct: 166 AD-GVIVLDLNEPED 179
>gi|171185834|ref|YP_001794753.1| exosome complex exonuclease Rrp41 [Pyrobaculum neutrophilum V24Sta]
gi|254782538|sp|B1Y978.1|ECX1_THENV RecName: Full=Probable exosome complex exonuclease 1
gi|170935046|gb|ACB40307.1| exosome complex exonuclease 1 [Pyrobaculum neutrophilum V24Sta]
Length = 246
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 87/201 (43%), Gaps = 41/201 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
RADGR P+Q+R + S ++ A GSA V
Sbjct: 14 RADGRAPDQMREVQISVGVISNADGSA------------------------------MVS 43
Query: 65 SGDTKVLAAVYGPKAGTKKNEN-PEKASIEVIW---------KPRTGQIGKPEKEYEIIL 114
G T +AAVYGP+ ++ + P++ + V + + ++ + E E +L
Sbjct: 44 YGATTAVAAVYGPREMHPRHLSLPDRGVMRVRYHMAPFSTKDERKSPTPSRREIEISKVL 103
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
+ L+ +L P + V I+++ DG+ ++ AA AL DAGI M+ L + +
Sbjct: 104 REALEPAVMLEQYPRSRIDVFIEILQADGSTRVASLTAASLALADAGIYMRDLVIGVSVG 163
Query: 175 SAESGYCILDPTKLEEQKMKG 195
+ G +LD LE+Q +G
Sbjct: 164 LVD-GTVVLDLNGLEDQYGEG 183
>gi|330835838|ref|YP_004410566.1| exosome complex exonuclease Rrp41 [Metallosphaera cuprina Ar-4]
gi|329567977|gb|AEB96082.1| exosome complex exonuclease Rrp41 [Metallosphaera cuprina Ar-4]
Length = 245
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 88/195 (45%), Gaps = 40/195 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P++LRP+ +L A GS+ V
Sbjct: 16 RLDGRRPDELRPMKMEIGVLKNADGSS------------------------------LVE 45
Query: 65 SGDTKVLAAVYGPKAGTKKN-ENPEKASIEVIW--------KPRTGQIGKPEKEYEIILK 115
G+TK++AAVYGP+ ++ P +A++ V + + ++ + E E +++
Sbjct: 46 VGNTKIIAAVYGPREMHPRHLALPNRATLRVRYHMTPFSTDERKSPVPSRREIELSKVIR 105
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
L+S ++ P ++ V ++V+ D ++ AA A++DAGIP++ A+
Sbjct: 106 EALESSVLVEQFPRSSIDVFMEVIQADAGTRLASLMAASLAIIDAGIPVRDAIAAVAVGK 165
Query: 176 AESGYCILDPTKLEE 190
A+ G +LD + E+
Sbjct: 166 AD-GVVVLDLNEPED 179
>gi|225709136|gb|ACO10414.1| Exosome complex exonuclease RRP41 [Caligus rogercresseyi]
Length = 246
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 74/275 (26%), Positives = 115/275 (41%), Gaps = 64/275 (23%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWS-QGFRFIQTSHFYHFNLFVFTSKCYFCYWV 63
R DGR ++LR L C G+ SWS G +++
Sbjct: 10 RLDGRKSDELRRLRCRL-------GAFSWSADGSAYLEM--------------------- 41
Query: 64 GSGDTKVLAAVYGPK----AGTKKNENPEKASIEVIW--------KPRTGQIG-KPEKEY 110
G+TKVLAAVYGP+ + N N E+A + V + + + Q G K E
Sbjct: 42 --GNTKVLAAVYGPREPRGGSSGDNSNKEEAILNVQFSSAAFSTAERKQRQRGDKRSLEM 99
Query: 111 EIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVA 170
LK+T + + P + + ++V+ DG ++NAA AL+ AGIP++
Sbjct: 100 AAHLKQTFAACIQTELYPRSQIDIFVEVLQTDGGHYCASVNAATLALIHAGIPLRDY--- 156
Query: 171 ICCCSAE--SGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLV-----QGEPMEH 223
+C CSA +LD + LE + L P IL+ LP+ +V Q M+H
Sbjct: 157 VCACSASLIKETPLLDISMLE-------SNLGGPELILAALPKSGEIVLLEMSQRFHMDH 209
Query: 224 --GIITSVTHGAMSVDDYFHCLERGRAAS-AKLSD 255
+I G + D + R + AK++D
Sbjct: 210 LEKVIDEALEGTRKIRDILDEVVRDHLSKHAKVND 244
>gi|71981632|ref|NP_001021274.1| Protein EXOS-4.1, isoform a [Caenorhabditis elegans]
gi|6226696|sp|Q17533.2|EXOS4_CAEEL RecName: Full=Putative exosome complex component RRP41; AltName:
Full=Ribosomal RNA-processing protein 41
gi|3873830|emb|CAA97771.3| Protein EXOS-4.1, isoform a [Caenorhabditis elegans]
Length = 240
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 80/198 (40%), Gaps = 40/198 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P Q+R + + A GS CY +
Sbjct: 10 RIDGRRPAQIRNINTRLGLNRNAEGS--------------------------CYLEH--- 40
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKP-------RTGQIGKPEKEYEI--ILK 115
G+TKVL AVYGP G +K +I + R + K EI +L+
Sbjct: 41 -GNTKVLCAVYGPYEGKSSKRIEDKCAIVCQYSATKFSGLERKNRTRGDRKSTEISRLLE 99
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
+ +S+ + P + + +V+ DG+ L +NA AL DAGIPMK +A A C
Sbjct: 100 KAFESVILTEAFPRSQLDIFCEVIQGDGSNLAACVNATSLALADAGIPMKGIASA-ATCG 158
Query: 176 AESGYCILDPTKLEEQKM 193
G I+D T EE +
Sbjct: 159 VVDGKPIVDLTSREETDL 176
>gi|374633082|ref|ZP_09705449.1| archaeal exosome-like complex exonuclease 1 [Metallosphaera
yellowstonensis MK1]
gi|373524566|gb|EHP69443.1| archaeal exosome-like complex exonuclease 1 [Metallosphaera
yellowstonensis MK1]
Length = 245
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 88/195 (45%), Gaps = 40/195 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P++LRP+ +L A GS+ V
Sbjct: 16 RLDGRRPDELRPMKIEIGVLKNADGSS------------------------------LVE 45
Query: 65 SGDTKVLAAVYGPKAGTKKN-ENPEKASIEVIW--------KPRTGQIGKPEKEYEIILK 115
G+TK++AAVYGP+ ++ P +A + V + + ++ + E E +++
Sbjct: 46 VGNTKIIAAVYGPREMHPRHLALPNRAVLRVRYHMTPFSTDERKSPAPSRREIELSKVIR 105
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
L+S ++ P ++ + ++V+ D ++ AA A+VDAGIP++ + A+
Sbjct: 106 EALESSILVEQFPRSSIDIFMEVIQADAGTRLASLMAASLAVVDAGIPVRDIIAAVAVGK 165
Query: 176 AESGYCILDPTKLEE 190
A+ G +LD + E+
Sbjct: 166 AD-GVIVLDLNEPED 179
>gi|440636348|gb|ELR06267.1| hypothetical protein GMDG_02061 [Geomyces destructans 20631-21]
Length = 245
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 71/147 (48%), Gaps = 15/147 (10%)
Query: 70 VLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPN 129
++ AV GP +++E PE+A+I+VI +P G E+ E I++RTL+ + +++ P
Sbjct: 30 IIGAVNGPIEVQRRDELPEEAAIDVIVRPAAGVGSTRERHLESIIERTLRQMVLISNFPR 89
Query: 130 TTTSVIIQVVH---DDGA------------LLPCAINAACAALVDAGIPMKHLAVAICCC 174
T V +QV D+ A +LP + A AL+ A IP+ A
Sbjct: 90 TLIQVTLQVTSIPPDETATSKSIQTSSTLPILPALLQTAILALLSAAIPLSTSLTATFLA 149
Query: 175 SAESGYCILDPTKLEEQKMKGFAYLVF 201
+E G + +P+ LE Q + L F
Sbjct: 150 ISEKGKILQNPSLLETQTAQSIHVLAF 176
>gi|119872348|ref|YP_930355.1| exosome complex exonuclease Rrp41 [Pyrobaculum islandicum DSM 4184]
gi|254782537|sp|A1RST0.1|ECX1_PYRIL RecName: Full=Probable exosome complex exonuclease 1
gi|119673756|gb|ABL88012.1| ribosomal RNA-processing protein RRP41/SKI6 [Pyrobaculum islandicum
DSM 4184]
Length = 246
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 86/201 (42%), Gaps = 41/201 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
RADGR P+Q+R + + I+ A GSA V
Sbjct: 14 RADGRAPDQMREVNITVGIVSNADGSA------------------------------MVS 43
Query: 65 SGDTKVLAAVYGPKAGTKKNEN-PEKASIEVIW-------KPRTGQIGKPEKEYEI--IL 114
G T +AAVYGP+ ++ + P++ + V + K +E EI IL
Sbjct: 44 YGATTAVAAVYGPREMHPRHLSLPDRGVMRVRYHMAPFSTKDERKSPTPTRREIEISKIL 103
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
+ L+ +L P + V I+++ DG+ ++ AA AL DAG+ M+ L + +
Sbjct: 104 REALEPAVVLEQYPRSRIDVFIEILQADGSTRVASLTAASLALADAGVYMRDLVIGVSVG 163
Query: 175 SAESGYCILDPTKLEEQKMKG 195
+ G +LD LE+Q +G
Sbjct: 164 LVD-GAVVLDLNGLEDQYGEG 183
>gi|255579328|ref|XP_002530509.1| Exosome complex exonuclease RRP41, putative [Ricinus communis]
gi|223529966|gb|EEF31893.1| Exosome complex exonuclease RRP41, putative [Ricinus communis]
Length = 241
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 87/187 (46%), Gaps = 47/187 (25%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P ++R L + +A GSA + G
Sbjct: 10 RLDGRRPMEMRQLRAQIGAVSKADGSAVFEMG---------------------------- 41
Query: 65 SGDTKVLAAVYGPKAGTKKNENP-EKASIE---VIWKPRTG-QIGKPE-----KEYEIIL 114
+TKV+AAVYGP+ +++ ++A + + TG ++ KP+ E +++
Sbjct: 42 --NTKVIAAVYGPREVQNRSQQIIDQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVI 99
Query: 115 KRTLQSICILT-INPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
++T++ CILT + P + + +QV+ DG INAA AL DAGIPM+ L +
Sbjct: 100 RQTMEE-CILTHLMPRSQIDIYVQVLQADGGTRSACINAATLALADAGIPMRDL---VTS 155
Query: 174 CSAESGY 180
CSA GY
Sbjct: 156 CSA--GY 160
>gi|315427141|dbj|BAJ48756.1| exosome complex component RRP41 [Candidatus Caldiarchaeum
subterraneum]
gi|315427160|dbj|BAJ48774.1| exosome complex component RRP41 [Candidatus Caldiarchaeum
subterraneum]
gi|343485775|dbj|BAJ51429.1| exosome complex component RRP41 [Candidatus Caldiarchaeum
subterraneum]
Length = 246
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 82/200 (41%), Gaps = 48/200 (24%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P+++R + +L + GSA +V
Sbjct: 16 RVDGRRPDEMRKMRMEVGVLEKTDGSA------------------------------YVE 45
Query: 65 SGDTKVLAAVYGPKAGTKKN-ENPEKASIEVIW----------KPRTGQIGKPEKEYEI- 112
G T++ A V GP+ K+ E P+K I + KP +G +E E+
Sbjct: 46 LGGTRIYAGVIGPREVHPKHLELPDKGVINCRYHMASFSVDERKP----LGMTRREIELS 101
Query: 113 -ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAI 171
+++ L+++ L P + ++V+ DG I AA AL DAGIPM + AI
Sbjct: 102 KVIREALETVVFLEEFPRMMIDIFVEVIQADGGTRTAGITAASLALADAGIPMADMIAAI 161
Query: 172 CCCSAESGYCILDPTKLEEQ 191
+ G +LD + E++
Sbjct: 162 AVGKVD-GVLVLDINEQEDK 180
>gi|225454436|ref|XP_002280302.1| PREDICTED: exosome complex component RRP41 [Vitis vinifera]
gi|147867252|emb|CAN81194.1| hypothetical protein VITISV_022853 [Vitis vinifera]
gi|297745390|emb|CBI40470.3| unnamed protein product [Vitis vinifera]
Length = 241
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 85/190 (44%), Gaps = 53/190 (27%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P ++R + + +A GSA F+
Sbjct: 10 RLDGRRPMEMRQIRGEIGAVAKADGSA-------------FFEM---------------- 40
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASI-------------EVIWKPRTGQIGKPEKEYE 111
G+TKV+AAVYGP+ +++ ++ + + KP+ + E
Sbjct: 41 -GNTKVIAAVYGPREVENRSQQISDQALVRCEYTMANFSTGDRMRKPKGD---RRSTEIS 96
Query: 112 IILKRTLQSICILT-INPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVA 170
+++++T+++ CILT + P + + +QV+ DG INAA AL DAGIPM+ L
Sbjct: 97 LVIRQTMEA-CILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDL--- 152
Query: 171 ICCCSAESGY 180
+ CSA GY
Sbjct: 153 VTSCSA--GY 160
>gi|325959906|ref|YP_004291372.1| exosome complex exonuclease 1 [Methanobacterium sp. AL-21]
gi|325331338|gb|ADZ10400.1| exosome complex exonuclease 1 [Methanobacterium sp. AL-21]
Length = 243
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 85/201 (42%), Gaps = 48/201 (23%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
RAD R ++LR + +L RA GSA ++
Sbjct: 19 RADNRAFDELRKMKIEAGVLERADGSA------------------------------YLE 48
Query: 65 SGDTKVLAAVYGPKA-GTKKNENPEKASIE---------VIWKPRTGQIGKPEKEYEIIL 114
G KVLAAVYGP+ ++ P KA + V + R G P++ I
Sbjct: 49 IGGNKVLAAVYGPRELFVRRLMQPNKAVLRCKYNMAPFSVDDRKRPG----PDRRSVEIS 104
Query: 115 KRTLQSI---CILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAI 171
K Q++ L P +T V I+V+ +G I AA AL DAGIPM+ + VA
Sbjct: 105 KLASQALTPAVFLEKFPRSTIDVFIEVIEAEGGTRCAGITAASVALADAGIPMRDMVVA- 163
Query: 172 CCCSAESGYCILDPTKLEEQK 192
C G ILD +++E+++
Sbjct: 164 CAAGKSDGKVILDLSEVEDKE 184
>gi|297853206|ref|XP_002894484.1| hypothetical protein ARALYDRAFT_474556 [Arabidopsis lyrata subsp.
lyrata]
gi|297340326|gb|EFH70743.1| hypothetical protein ARALYDRAFT_474556 [Arabidopsis lyrata subsp.
lyrata]
Length = 122
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 38/43 (88%)
Query: 103 IGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 145
+ K E+EY+ ILKRTLQSIC+LT+ PN+TTSVIIQVVHD G++
Sbjct: 49 LRKVEREYKTILKRTLQSICVLTVVPNSTTSVIIQVVHDGGSV 91
>gi|125984746|ref|XP_001356137.1| GA13761 [Drosophila pseudoobscura pseudoobscura]
gi|195161898|ref|XP_002021795.1| GL26697 [Drosophila persimilis]
gi|54644456|gb|EAL33197.1| GA13761 [Drosophila pseudoobscura pseudoobscura]
gi|194103595|gb|EDW25638.1| GL26697 [Drosophila persimilis]
Length = 249
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 81/195 (41%), Gaps = 39/195 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P++LR + C + + GSA QG
Sbjct: 14 RLDGRRPHELRHIKCKLGVFEQPDGSAYMEQG---------------------------- 45
Query: 65 SGDTKVLAAVYGPKA--GTKKNENP-------EKASIEVIWKPRTGQIGKPEKEYEIILK 115
+TKVLAAVYGP G K N +A+ + + + E+++ L+
Sbjct: 46 --NTKVLAAVYGPHQAKGMKTETNDVIINCQYSQATFATAERKNRPRGDRKSLEFKMYLE 103
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
+ L + + P + + ++V+ DGA A+NAA AL+DAGI + VA
Sbjct: 104 QALSAAIKSELYPRSQIDIYVEVLQADGANYAVALNAATLALIDAGICLNEFIVACTASL 163
Query: 176 AESGYCILDPTKLEE 190
++S + D + EE
Sbjct: 164 SKSSIPLTDISHTEE 178
>gi|225715750|gb|ACO13721.1| Exosome complex exonuclease MTR3 [Esox lucius]
Length = 277
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 88/197 (44%), Gaps = 42/197 (21%)
Query: 5 RADGRNPNQL--RPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYW 62
R DGR Q+ R + C ++ +A GSA +
Sbjct: 36 RVDGRQRGQVDVRSVFVRCGLISQAKGSA------------------------------Y 65
Query: 63 VGSGDTKVLAAVYGPKAGTKKNENPEKAS---IEVIWKP-----RTGQI-GKPEKEYEII 113
+ +G+TK++ VYGP+ +K+E K+ ++ + P R I G EK+ ++
Sbjct: 66 IEAGNTKLICCVYGPREMERKDETDMKSGRLMTDMRFAPFSCRERGSWIQGSDEKDLSLM 125
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
L +L+ L P + V + V+ +DG++L A+ A AL DAGI M L + C
Sbjct: 126 LLESLRPGVCLHKYPRSQIEVNVMVLENDGSVLAHAVTCASMALADAGIEMYDLVLG-CS 184
Query: 174 CSAESGYCILDPTKLEE 190
ES ++DPT LEE
Sbjct: 185 IRQESATYLIDPTYLEE 201
>gi|410925956|ref|XP_003976445.1| PREDICTED: exosome complex component MTR3-like [Takifugu rubripes]
Length = 268
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 87/197 (44%), Gaps = 42/197 (21%)
Query: 5 RADGRNPNQL--RPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYW 62
RADGR +Q+ RP+ C ++ +A GSA +
Sbjct: 34 RADGRRRDQVDVRPVFVRCGLVSQAKGSA------------------------------Y 63
Query: 63 VGSGDTKVLAAVYGPKAGTKKNENPEKA---SIEVIWKP-----RTGQI-GKPEKEYEII 113
+ +G+TK++ VYGP+ +K+E K + ++ + P R I G EK++ +
Sbjct: 64 IEAGNTKLMCCVYGPRETERKDETDMKCGRLTTDMRFAPFSCPERGSWIQGSQEKDFSTM 123
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
L+ +LQ L P + V + V+ + G++L AI A AL DAGI M L + C
Sbjct: 124 LQESLQPAVCLHKYPRSQIEVNMMVLENSGSVLAHAITCASLALADAGIEMYDLVLG-CS 182
Query: 174 CSAESGYCILDPTKLEE 190
+ DPT EE
Sbjct: 183 LRQNGASYVADPTSAEE 199
>gi|41152247|ref|NP_957033.1| exosome complex exonuclease RRP41 [Danio rerio]
gi|37747963|gb|AAH59525.1| Exosc4 protein [Danio rerio]
gi|46403217|gb|AAS92628.1| exosome complex exonuclease RRP41 [Danio rerio]
gi|157423431|gb|AAI53618.1| Exosc4 protein [Danio rerio]
Length = 245
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 75/183 (40%), Gaps = 44/183 (24%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +LR + S+ +A GSA QG
Sbjct: 13 RLDGRKATELRKVQARMSVFAQADGSAYLEQG---------------------------- 44
Query: 65 SGDTKVLAAVYGPKA--GTKKNENPEKASIEVIW---------KPRTGQIGKPEKEYEII 113
+TK LA VYGP G++ ++A I + + R + E +
Sbjct: 45 --NTKALAVVYGPHEIRGSRSKSLHDRAIINCQYSMATFSTAERKRRPHGDRKSSEMSLH 102
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
LK+T ++ + + P + + ++++ DG +NAA ALVDAGIPM+ +C
Sbjct: 103 LKQTFEAAVLTELYPRSQIDIYVKILQADGGNYSACVNAATLALVDAGIPMRDY---VCA 159
Query: 174 CSA 176
CSA
Sbjct: 160 CSA 162
>gi|356573193|ref|XP_003554748.1| PREDICTED: exosome complex component RRP41-like [Glycine max]
Length = 241
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 95/222 (42%), Gaps = 58/222 (26%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P ++R + + +A GSA + G
Sbjct: 10 RLDGRRPMEMRQIRAEIGAVSKADGSAIFEMG---------------------------- 41
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEK----------ASIEVIWKPRTGQIGKPEKEYEIIL 114
+TKV+AAVYGP+ +++ A+ + R + + E +++
Sbjct: 42 --NTKVIAAVYGPREVQNRSQQISSHALVRCEYCMANFSTGDRMRKSKGDRRSTEISLVI 99
Query: 115 KRTLQSICILT-INPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
++T+++ CILT + P + + +QV+ DG INAA AL DAGIPM+ L +
Sbjct: 100 RQTMEA-CILTHLLPRSQIDIYVQVLQADGGTRSACINAATLALADAGIPMRDL---VTS 155
Query: 174 CSAESGYC----ILDPTKLEEQKMKGFAYLVFPNSILSVLPE 211
CSA GY +LD +E+ P+ L +LP+
Sbjct: 156 CSA--GYLNSTPLLDLNYVEDSAGG-------PDVTLGILPK 188
>gi|449303034|gb|EMC99042.1| hypothetical protein BAUCODRAFT_41389, partial [Baudoinia
compniacensis UAMH 10762]
Length = 198
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 63/120 (52%), Gaps = 10/120 (8%)
Query: 70 VLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPN 129
+LAAV GP +++E PE+A+IEV +P G G E+ E ++ L+S+ ++ ++P
Sbjct: 26 ILAAVNGPVEVQRRDELPEEAAIEVNIRPVAGVGGPRERWLESVVTAVLRSVLLVHMHPR 85
Query: 130 TTTSVIIQVVH----------DDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESG 179
T + +Q+ D ++LP +NAA AL D G+PM+ A +E G
Sbjct: 86 TLIQITLQITKLPTQKLRGAWKDVSVLPALVNAAFLALADGGLPMQSTVTAELFTISEDG 145
>gi|299742531|ref|XP_001832547.2| exosome component 4 [Coprinopsis cinerea okayama7#130]
gi|298405226|gb|EAU89296.2| exosome component 4 [Coprinopsis cinerea okayama7#130]
Length = 263
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 88/215 (40%), Gaps = 41/215 (19%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R+DGR +LR L+ S A GSA S G
Sbjct: 17 RSDGRRQYELRDLSIDLSRHGEADGSALISHGL--------------------------- 49
Query: 65 SGDTKVLAAVYGPK-AGTKKNENPEKASIEV---IWKPRTGQIGKPEK------EYEIIL 114
T+VL +V+GP+ A + + ++A+I V + TG+ K K E+ +
Sbjct: 50 ---TQVLVSVHGPREAKMRSHTFHDRANINVEVTVASFSTGERRKRLKGDKRILEFAATI 106
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
K T + + ++ P + + IQ++ DG L IN AL++AGIPM AI
Sbjct: 107 KSTFEPVVRTSLYPRSQIDIYIQILQQDGGTLQTCINGTTLALINAGIPMSDFVCAI-SG 165
Query: 175 SAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVL 209
S +LD T LEE + V P S VL
Sbjct: 166 GVHSTSPMLDLTTLEENDVPHVTVAVMPKSKKVVL 200
>gi|452848085|gb|EME50017.1| hypothetical protein DOTSEDRAFT_68766 [Dothistroma septosporum
NZE10]
Length = 240
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 78/161 (48%), Gaps = 11/161 (6%)
Query: 64 GSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICI 123
G G V+AA GP +++E PE+A+IEV +P +G G E+ E +L+ L+ I +
Sbjct: 20 GDGLYTVIAAANGPVEVQRRDELPEEAAIEVNLRPLSGVGGPRERWLENLLQPLLEKILL 79
Query: 124 LTINPNTTTSVIIQVVHD----------DGALLPCAINAACAALVDAGIPMKHLAVAICC 173
+ ++P T V +Q+ D +++P +NAA ALVD +P+ A+
Sbjct: 80 VHMHPRTLIQVTLQITKQPTAKFRRSNADISIIPTLVNAAFTALVDGALPLATTVNAVLV 139
Query: 174 CSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSS 214
+ + G P + + + + F N+I + E SS
Sbjct: 140 TTGKDGKINTTPKEQDIETCASIHAMAF-NTINEQVLEQSS 179
>gi|357512489|ref|XP_003626533.1| Exosome complex exonuclease RRP41 [Medicago truncatula]
gi|355501548|gb|AES82751.1| Exosome complex exonuclease RRP41 [Medicago truncatula]
Length = 241
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 84/187 (44%), Gaps = 47/187 (25%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R+DGR P ++R + + +A GSA + G
Sbjct: 10 RSDGRRPMEMRQIRAEIGAVSKADGSAIFEMG---------------------------- 41
Query: 65 SGDTKVLAAVYGPKAGTKKNEN-PEKASIEVIW---------KPRTGQIGKPEKEYEIIL 114
+TKV+AAVYGP+ +++ +KA + + + R + + E +++
Sbjct: 42 --NTKVIAAVYGPREVQNRSQQMSDKALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVI 99
Query: 115 KRTLQSICILT-INPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
++T++ CILT + P + + +QV+ DG INAA AL DAGIPM L +
Sbjct: 100 RQTMEE-CILTHLMPRSQIDIYVQVLQADGGTRSACINAATLALADAGIPMLDL---VTS 155
Query: 174 CSAESGY 180
CSA GY
Sbjct: 156 CSA--GY 160
>gi|297824101|ref|XP_002879933.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297325772|gb|EFH56192.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 138
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/39 (76%), Positives = 35/39 (89%)
Query: 107 EKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 145
E+EYE ILKRTLQSIC+LT+ PN TTSVIIQVVHD G++
Sbjct: 78 EREYETILKRTLQSICVLTVVPNITTSVIIQVVHDGGSV 116
>gi|413948423|gb|AFW81072.1| hypothetical protein ZEAMMB73_833729 [Zea mays]
Length = 236
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 91/201 (45%), Gaps = 56/201 (27%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR PN++R L ++ RA GSA + G
Sbjct: 11 RVDGRRPNEMRQLKGEVGVVARADGSALFEMG---------------------------- 42
Query: 65 SGDTKVLAAVYGPKAGTKKNE--NPEKASIEVIWKPRTGQIG----KPE-----KEYEII 113
+T+V+AAVYGP+ K + N ++A + ++ G KP+ E ++
Sbjct: 43 --NTRVIAAVYGPREVQNKGQQVNSKEALVRCEYRMAEFSTGDRRRKPKGDRRSTEISLV 100
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
+++T+++ + + P++ + +QV L INAA AL DAGIPM+ +A +
Sbjct: 101 IRQTMEASILTHLMPHSQIDIYVQV------LRSACINAATLALADAGIPMRDIATS--- 151
Query: 174 CSAESGYC----ILDPTKLEE 190
CSA GY +LD LE+
Sbjct: 152 CSA--GYLCSTPLLDLNYLED 170
>gi|410671927|ref|YP_006924298.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanolobus
psychrophilus R15]
gi|409171055|gb|AFV24930.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanolobus
psychrophilus R15]
Length = 346
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 78/200 (39%), Gaps = 50/200 (25%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR N++R + +L RA GS CY W
Sbjct: 15 RLDGRQINEMRQMKIKIGVLSRADGS--------------------------CYL-EW-- 45
Query: 65 SGDTKVLAAVYGPK------------AGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEI 112
G+ K+L AVYGP+ A + N S+E +P G + EI
Sbjct: 46 -GNNKILVAVYGPRELHPRRLQKADSALIRYRYNMAAFSVEDRIRP-----GPSRRSIEI 99
Query: 113 --ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVA 170
+ + + + + + P V +V+ D AINAA AL DAGIPMK L V+
Sbjct: 100 SKVSREAFEPVIMTHLYPGAVIDVFAEVLQADAGTRTAAINAASIALADAGIPMKSL-VS 158
Query: 171 ICCCSAESGYCILDPTKLEE 190
C G +LD K E+
Sbjct: 159 ACAVGKVDGQLVLDLNKAED 178
>gi|301773434|ref|XP_002922118.1| PREDICTED: exosome complex exonuclease RRP41-like isoform 2
[Ailuropoda melanoleuca]
Length = 240
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 76/181 (41%), Gaps = 45/181 (24%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +LR + + +A GSA ++
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSA------------------------------YIE 42
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEK---------EYEIILK 115
G+TK LA VYGP + + +A + + T G+ ++ E + L+
Sbjct: 43 QGNTKALAVVYGPHEAKGRRD---RALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLR 99
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
+T ++ + ++P + + +QV+ DG +NAA A++DAGIPM+ +C CS
Sbjct: 100 QTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDF---VCACS 156
Query: 176 A 176
A
Sbjct: 157 A 157
>gi|357625482|gb|EHJ75909.1| putative exosome complex exonuclease RRP41 [Danaus plexippus]
Length = 251
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 83/202 (41%), Gaps = 49/202 (24%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR PN+LR + C + + GSA QG
Sbjct: 13 RLDGRRPNELRRIRCKLGVFTQPDGSAYLEQG---------------------------- 44
Query: 65 SGDTKVLAAVYGPKAGTK-KNENPEKASIEVIWKPRTGQIG---------KPEKEYEIIL 114
+TKVLAAVYGP + + + E + + T G + +E + L
Sbjct: 45 --NTKVLAAVYGPHQVRRFRKSSAEGVVVNCQYSMATFSTGERKNRPRGDRKSQEMSMHL 102
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
++ L + + P + + ++V+ DG ++NA+ AL+DAGIP+K +C C
Sbjct: 103 RQALTAAIKTEMYPRSQIDIYVEVLQADGGAYCASVNASTLALIDAGIPLK---AYVCSC 159
Query: 175 SAESGYC------ILDPTKLEE 190
SA + +LD +EE
Sbjct: 160 SASMAWLDGVPEPLLDVGHVEE 181
>gi|321262921|ref|XP_003196179.1| hypothetical Protein CGB_I2130C [Cryptococcus gattii WM276]
gi|317462654|gb|ADV24392.1| conserved hypothetical protein [Cryptococcus gattii WM276]
Length = 299
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 77/315 (24%), Positives = 119/315 (37%), Gaps = 84/315 (26%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P QLRPL S L RA GSA F F
Sbjct: 9 RPDGRTPAQLRPLHLSIGELDRADGSAR------------------FAF----------- 39
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILK--------- 115
G VLA+ GP + E P+KA+ EV +P G P + L+
Sbjct: 40 -GSNAVLASCSGPIEVRLREELPDKATFEVNHRPLEGVGATPSRALVTTLETIFPPVLSL 98
Query: 116 ----RTLQSICILTINPNTTTSVIIQVV----------------HDDGALLP-------- 147
R+L + + ++ P+T +V V+ +D+ A +P
Sbjct: 99 EKHPRSLVQLVVQSLMPSTCRAVYGSVIGTEGVGAEQNTWPATDNDEYAYVPESKRDAAR 158
Query: 148 -------------CAINAACAALVDAG-IPMKHLAVAICCCSAESGYCILDPTKLEEQKM 193
+INA+ AL+ AG I + L VA+ G +LDP EE++
Sbjct: 159 ISPAAGYTFTARAASINASTLALLSAGTISILALPVAVALVVTTEGSMMLDPEADEEKQA 218
Query: 194 KG-FAYLVFPNSILSVLPEGSSLVQGEPMEHG--IITSVTHGAMSVDDYFHCLERGRAAS 250
K F + +I EG+S+ E G ++ + G + ++ LE + A+
Sbjct: 219 KARFGFGWAWGAIFGTASEGNSMEVAGQSEGGAELVWVESEGNFTRQEWSEALEMSKTAT 278
Query: 251 AKLSDFLRRSLQSKL 265
+ +F+R L + L
Sbjct: 279 KAILEFIRIQLDAHL 293
>gi|440293108|gb|ELP86270.1| exosome complex exonuclease RRP41, putative [Entamoeba invadens
IP1]
Length = 238
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 80/198 (40%), Gaps = 49/198 (24%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P ++R A GSA V
Sbjct: 10 RVDGRRPTEMRKCEMELGFEKSADGSA------------------------------RVR 39
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRT--------GQIGKPEKEYEIILKR 116
G+T V A V GP G ++N + A ++V + T + E +LK+
Sbjct: 40 MGNTLVEAVVSGPMEGKRRNHDS--AELKVFFSQATFATRRRRERMFDRNMAETSELLKQ 97
Query: 117 TLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSA 176
+ + ++ P T+ + +QV+ DDG++ AINA AL+DAGIPM + SA
Sbjct: 98 MYEQVVLVKQLPETSIEIRVQVLQDDGSVNAAAINACTLALIDAGIPMSDI-----VSSA 152
Query: 177 ESGYC----ILDPTKLEE 190
E GY ++D K EE
Sbjct: 153 EGGYISGRMVVDMGKDEE 170
>gi|303282535|ref|XP_003060559.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226458030|gb|EEH55328.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 137
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 52/93 (55%)
Query: 70 VLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPN 129
V AAVYGP ++ +K IEV+ +P +G +KE E+ ++R L+ + +P
Sbjct: 5 VYAAVYGPMEIRAGKQDTDKLVIEVVVRPASGAPSSADKEREVTIRRALEHVVKTAAHPR 64
Query: 130 TTTSVIIQVVHDDGALLPCAINAACAALVDAGI 162
V++Q V DG + +NAACAAL+DA +
Sbjct: 65 CGIRVVLQTVSSDGGIDAILLNAACAALIDASV 97
>gi|213513832|ref|NP_001134673.1| Exosome complex exonuclease MTR3 [Salmo salar]
gi|209735138|gb|ACI68438.1| Exosome complex exonuclease MTR3 [Salmo salar]
Length = 277
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 87/197 (44%), Gaps = 42/197 (21%)
Query: 5 RADGRNPNQL--RPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYW 62
R DGR Q+ R + C ++ +A GSA +
Sbjct: 36 RVDGRQRGQVDVRSVFVRCGLISQAKGSA------------------------------Y 65
Query: 63 VGSGDTKVLAAVYGPKAGTKKNENPEKAS---IEVIWKP-----RTGQI-GKPEKEYEII 113
+ +G+TK++ VYGP+ +K+E K+ ++ + P R I G EK+ ++
Sbjct: 66 IEAGNTKLICCVYGPRETERKDETDMKSGRLITDMRFAPFSCRERGSWIQGSDEKDLSLM 125
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
L +L+ L P + V + V+ +DGA+L A+ A AL DAGI M L + C
Sbjct: 126 LLESLRPGVCLQKYPRSQIEVNVMVLENDGAVLAHAVTCASMALADAGIEMYDLVLG-CS 184
Query: 174 CSAESGYCILDPTKLEE 190
E ++DPT LEE
Sbjct: 185 IRQEGATYLIDPTFLEE 201
>gi|367001256|ref|XP_003685363.1| hypothetical protein TPHA_0D02930 [Tetrapisispora phaffii CBS 4417]
gi|357523661|emb|CCE62929.1| hypothetical protein TPHA_0D02930 [Tetrapisispora phaffii CBS 4417]
Length = 222
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 90/211 (42%), Gaps = 19/211 (9%)
Query: 66 GDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILT 125
DTKVL +V GP + E P + ++EVI +P G EK E L+ L I L
Sbjct: 22 NDTKVLCSVTGPIEPKARQELPSQLALEVIIRPAKGVSSTREKLMEDKLRSVLTPIITLY 81
Query: 126 INPNTTTSVIIQVVHDDGA-------LLPCAINAACAALVDAGIPMKHLAVAICCCSAES 178
P + Q++ + L C INAA AL+DAGI +K +I +++
Sbjct: 82 QYPRQLCQITCQILESGESEYEFSEKELSCCINAAFLALIDAGIALKSTVSSISLVISQN 141
Query: 179 GYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDD 238
I++PT + + L L++ + + ++ ++G + +
Sbjct: 142 NEVIVNPTGAQLLNSRSVHILAL------------ELIKEMNIVNNVLLLDSNGDFNEKE 189
Query: 239 YFHCLERGRAASAKLSDFLRRSLQSKLPGDL 269
F LE G + L LR+ +Q+ + ++
Sbjct: 190 LFQVLETGEKSCLALGQDLRKVIQNNVDSNI 220
>gi|395526107|ref|XP_003765212.1| PREDICTED: exosome complex component RRP46-like [Sarcophilus
harrisii]
Length = 191
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 56/120 (46%), Gaps = 17/120 (14%)
Query: 145 LLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNS 204
LL C +NAAC ALVDAG+PM+ L + C G ILDPT +E++ + ++
Sbjct: 85 LLACCLNAACLALVDAGVPMRALFCGVTCALDPDGALILDPTAKQEKEARAILTFALDST 144
Query: 205 ILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSK 264
E ++ S T G SV ++ CL + AS + F R SLQ +
Sbjct: 145 -----------------EQKLLMSTTKGLYSVAEFQQCLAAAQHASHHIFRFYRDSLQRR 187
>gi|302348936|ref|YP_003816574.1| exosome complex exonuclease 1 [Acidilobus saccharovorans 345-15]
gi|302329348|gb|ADL19543.1| Probable exosome complex exonuclease 1 [Acidilobus saccharovorans
345-15]
Length = 242
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 84/189 (44%), Gaps = 40/189 (21%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P+++RP+ +L A GSA V
Sbjct: 15 RLDGRLPDEMRPVDMKVGVLSNADGSA------------------------------IVS 44
Query: 65 SGDTKVLAAVYGPKAGTKK-NENPEKASIEVIW--KPRTGQIGKP----EKEYEI--ILK 115
G TKVLAAVYGP+ +K P++AS+ V + P + + K +E EI +L+
Sbjct: 45 YGKTKVLAAVYGPREPLQKYTVLPDRASLFVRYHMAPFSTEERKSPVPTRREVEISKVLR 104
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
L+ + I + P T V ++V+ DG + AA AL DAGIPM+ L +
Sbjct: 105 EALEPVVITELFPRTVIEVYVEVLQSDGGTRTASATAASLALADAGIPMRALVAGVAIGK 164
Query: 176 AESGYCILD 184
++ +LD
Sbjct: 165 VDN-VVVLD 172
>gi|67471870|ref|XP_651847.1| 3' exoribonuclease family protein [Entamoeba histolytica HM-1:IMSS]
gi|56468626|gb|EAL46457.1| 3' exoribonuclease family protein [Entamoeba histolytica HM-1:IMSS]
gi|449702785|gb|EMD43355.1| 3' exoribonuclease family protein [Entamoeba histolytica KU27]
Length = 238
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 80/198 (40%), Gaps = 49/198 (24%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR ++R + L A GSA V
Sbjct: 10 RLDGRRTTEMRKCEMEINFLSTADGSAR------------------------------VR 39
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIW--------KPRTGQIGKPEKEYEIILKR 116
G+T V A V+GP G ++N E A + V + K R + E +LK+
Sbjct: 40 MGNTIVEAVVFGPLEGRRRNR--EGAELMVSYSQATFATRKRREQMHDRTMIETAELLKQ 97
Query: 117 TLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSA 176
+ I I + P T + +QV+ DDG++ INA AL+DAGIPM + A A
Sbjct: 98 MYEQIIITKLLPETMIDLRVQVMQDDGSVTAAVINACTLALIDAGIPMIDIVAA-----A 152
Query: 177 ESGYC----ILDPTKLEE 190
E GY ++D K EE
Sbjct: 153 EGGYIDGKMVVDMNKDEE 170
>gi|21228725|ref|NP_634647.1| exosome complex exonuclease 1 [Methanosarcina mazei Go1]
gi|29336795|sp|Q8PTT8.1|ECX1_METMA RecName: Full=Probable exosome complex exonuclease 1
gi|20907234|gb|AAM32319.1| Ribonuclease [Methanosarcina mazei Go1]
Length = 493
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 81/195 (41%), Gaps = 40/195 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +++RP+ +L RA GS CY +
Sbjct: 17 RLDGRRADEIRPMKIEVGVLSRADGS--------------------------CYLEW--- 47
Query: 65 SGDTKVLAAVYGPK-AGTKKNENPEKASIEVIWKPRTGQI------GKPEKEYEI--ILK 115
G K+L V+GP+ A ++++ + A I + + + G + EI + +
Sbjct: 48 -GRNKILVGVFGPREAHPRRSQRADSAVIRYRYNMASFSVEDRARPGPSRRSIEISKVSR 106
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
+ + + + P T + ++V+ D AINA+ AL DAGIPMK L + C
Sbjct: 107 EAFEPVIMAELFPKTAIDIFVEVLQADAGTRTAAINASSIALADAGIPMKGL-ITSCAFG 165
Query: 176 AESGYCILDPTKLEE 190
G +LD K E+
Sbjct: 166 KVDGKIVLDLNKEED 180
>gi|221101900|ref|XP_002160475.1| PREDICTED: exosome complex component RRP41-like [Hydra
magnipapillata]
Length = 244
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 78/182 (42%), Gaps = 43/182 (23%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR ++LR + I +A GSA ++
Sbjct: 13 RFDGRKCHELRKITAKKGIFSQADGSA------------------------------YIE 42
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEK----------ASIEVIWKPRTGQIGKPEKEYEIIL 114
G+TKV+A+VYGP + +++ A+ + + + + E ++L
Sbjct: 43 QGNTKVIASVYGPHEVSNRSKTLHDSTLINCQFSMATFSMSERKNRPKGDRKSTEISMLL 102
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
++T + + + P + + +QV+ DG ++ IN A AL+DAG+PMK +C C
Sbjct: 103 EKTFATAIMTELYPRSQIDIYVQVIQSDGGVIAACINVATLALIDAGVPMKDF---VCAC 159
Query: 175 SA 176
++
Sbjct: 160 TS 161
>gi|452003219|gb|EMD95676.1| hypothetical protein COCHEDRAFT_1019334 [Cochliobolus
heterostrophus C5]
Length = 254
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 77/181 (42%), Gaps = 45/181 (24%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR N+LR + S A GS+ ++
Sbjct: 14 RLDGRRWNELRHIHAQISTQAAADGSS------------------------------YLE 43
Query: 65 SGDTKVLAAVYGPKAGTKK---------NENPEKASIEVIWKPRTG------QIGKPEKE 109
G+TKVL +V GP A +K+ N+ K +E+ + +G + K E
Sbjct: 44 MGNTKVLVSVTGPAAESKQGGGQRGGISNDKLAKIDVEINFAGFSGVDRRKRKTDKKTNE 103
Query: 110 YEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAV 169
E L+ + + L + P +T ++ + VV DG+LL +NAA ALVDAGIPM V
Sbjct: 104 MEHCLRSAFEGVLSLHLYPRSTITIHVHVVSQDGSLLAACLNAATLALVDAGIPMTDYLV 163
Query: 170 A 170
A
Sbjct: 164 A 164
>gi|297795147|ref|XP_002865458.1| hypothetical protein ARALYDRAFT_494696 [Arabidopsis lyrata subsp.
lyrata]
gi|297311293|gb|EFH41717.1| hypothetical protein ARALYDRAFT_494696 [Arabidopsis lyrata subsp.
lyrata]
Length = 122
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 38/43 (88%)
Query: 103 IGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 145
+ K E+EY+ ILKRTLQ+IC+LT+ PN+TTSVIIQVVHD G++
Sbjct: 49 LRKVEREYKTILKRTLQNICVLTVVPNSTTSVIIQVVHDGGSV 91
>gi|167045225|gb|ABZ09885.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
crenarchaeote HF4000_APKG8O8]
Length = 245
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/271 (23%), Positives = 113/271 (41%), Gaps = 61/271 (22%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR N+ R + +L A GSA ++
Sbjct: 17 RCDGRKVNETRKVTIKAGVLKNADGSA------------------------------YIE 46
Query: 65 SGDTKVLAAVYGPKAGTKKN-ENPEKASIEVIWKPRTGQIGK------PEKEYEI--ILK 115
G K+LA V+GP+ K+ NP+ + V + + + +E EI ++K
Sbjct: 47 FGGNKILAGVFGPRDVHPKHLSNPDTGILRVRYHMEPFSVDERKNPAPSRREIEISKVVK 106
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
L+ IL P T V ++V+ DG A++AA AL DAGIPM+ + +C C+
Sbjct: 107 EALEPAVILEKFPRTVIDVFLEVLQADGGTRCAALDAASVALADAGIPMRDM---VCACA 163
Query: 176 AE--SGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGA 233
A + I+D E+Q + + + ++ V +L+Q G
Sbjct: 164 AGKVADTLIIDVNNEEDQAGQADMPVGYMPNLGKV-----TLLQ------------LDGV 206
Query: 234 MSVDDYFHCLERGRAASAKLSDFLRRSLQSK 264
++ +++ C+E G S ++ + +++L+ K
Sbjct: 207 LTPEEFKKCVELGIEGSKQVYEIQKQALREK 237
>gi|73669984|ref|YP_305999.1| exosome complex exonuclease 1 [Methanosarcina barkeri str. Fusaro]
gi|72397146|gb|AAZ71419.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanosarcina barkeri
str. Fusaro]
Length = 501
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 81/195 (41%), Gaps = 40/195 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR+ +++RP+ +L RA GS CY W
Sbjct: 15 RLDGRHADEIRPMKIEIGVLSRADGS--------------------------CYL-EW-- 45
Query: 65 SGDTKVLAAVYGPK-AGTKKNENPEKASIEVIWK------PRTGQIGKPEKEYEI--ILK 115
G KVL V+GP+ A ++++ + A I + + G + EI + +
Sbjct: 46 -GRNKVLVGVFGPREAHPRRSQRADTAVIRYKYNMASFSTEDRARPGPSRRSIEISKVSR 104
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
+ + + + P T + ++++ D AINA+ AL DAGIPMK L V C
Sbjct: 105 EAFEPVIMAELFPKTAIDIFVEILQADAGTRTAAINASSIALADAGIPMKGL-VTSCAFG 163
Query: 176 AESGYCILDPTKLEE 190
G +LD K E+
Sbjct: 164 KVDGQIVLDLNKEED 178
>gi|281204136|gb|EFA78332.1| Exosome complex exonuclease rrp41 [Polysphondylium pallidum PN500]
Length = 248
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 90/202 (44%), Gaps = 50/202 (24%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR N++R L I +RA GSA + QG
Sbjct: 13 RIDGRRNNEIRRLNMKMGIFNRADGSAYYEQG---------------------------- 44
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASI------EVIWKPRTGQIGKPEKE-----YEI- 112
+TK+ AVYGP+ +I + + T + KP ++ YEI
Sbjct: 45 --NTKITVAVYGPREVASNQRMLHDRAIVNCEYSQAAFSSATDR--KPTRKSDKQSYEIA 100
Query: 113 -ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAI 171
++K+ +S +T+ P + + +QV+ DG L A+NAA A++DAG+PM+ I
Sbjct: 101 SLIKQAFESTIQITLFPRSQIDIYVQVLQADGGLKAAALNAATLAVIDAGLPMRDF---I 157
Query: 172 CCCSAE--SGYCILDPTKLEEQ 191
C CSA G +LD ++EE+
Sbjct: 158 CACSATFIEGVPLLDMNQMEER 179
>gi|297790686|ref|XP_002863228.1| hypothetical protein ARALYDRAFT_497144 [Arabidopsis lyrata subsp.
lyrata]
gi|297309062|gb|EFH39487.1| hypothetical protein ARALYDRAFT_497144 [Arabidopsis lyrata subsp.
lyrata]
Length = 103
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 37/43 (86%)
Query: 103 IGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 145
+ K E+EYE ILKRT+QSIC+LT+ NTTTSVIIQVVHD G++
Sbjct: 49 LRKVEREYETILKRTIQSICVLTVVLNTTTSVIIQVVHDGGSV 91
>gi|341881249|gb|EGT37184.1| hypothetical protein CAEBREN_28802 [Caenorhabditis brenneri]
gi|341892052|gb|EGT47987.1| hypothetical protein CAEBREN_23050 [Caenorhabditis brenneri]
Length = 240
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 81/201 (40%), Gaps = 46/201 (22%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P Q+R + + A GS S+ H
Sbjct: 10 RLDGRRPAQIRNVNTRLGLNRNAEGS------------SYLEH----------------- 40
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASI------------EVIWKPRTGQIGKPEKEYEI 112
G+TKVL AVYGP G ++ +I E +PR + E
Sbjct: 41 -GNTKVLCAVYGPYEGKASKRLEDRCAIVCQYSTTTFSGLERKNRPRGD---RKSTEMSR 96
Query: 113 ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAIC 172
+L++ +S+ + P + + +V+ DG+ L +NA AL DAGIPMK +A A
Sbjct: 97 LLEKAFESVILTESFPRSQIDIFCEVIQGDGSNLAACVNATSLALADAGIPMKGIASAAT 156
Query: 173 CCSAESGYCILDPTKLEEQKM 193
C E G I+D T EE +
Sbjct: 157 CGIVE-GNPIVDLTSREETDL 176
>gi|301099917|ref|XP_002899049.1| exosome complex exonuclease MTR3-like protein [Phytophthora
infestans T30-4]
gi|262104361|gb|EEY62413.1| exosome complex exonuclease MTR3-like protein [Phytophthora
infestans T30-4]
Length = 252
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 72/154 (46%), Gaps = 11/154 (7%)
Query: 62 WVGSGDTKVLAAVYGPKAGTKKNENPEKAS---IEVIWKPRTGQIGKPEK-------EYE 111
+V G T+VL AVYGP+ T+ K +V + P ++ + E+ E
Sbjct: 55 YVELGRTRVLCAVYGPRTDTRARREFSKDGQLVCDVKYAPFADKLTRRERGQDPDEMELS 114
Query: 112 IILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAI 171
I++ L +L P SV + ++ DDG +L A+N A AL DA + M + A
Sbjct: 115 AIVEEALAPAVMLHKLPKCIISVFVTILEDDGGVLAAALNCASLALADAAVEMYDVVTA- 173
Query: 172 CCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSI 205
+G +LDP++ EEQ+ G L + S+
Sbjct: 174 SSAGIVNGSVVLDPSREEEQRGDGKLALAYMPSM 207
>gi|407038338|gb|EKE39071.1| 3' exoribonuclease family protein [Entamoeba nuttalli P19]
Length = 238
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 80/198 (40%), Gaps = 49/198 (24%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR ++R + L A GSA V
Sbjct: 10 RLDGRRTTEMRKCEMEINFLSTADGSAR------------------------------VR 39
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIW--------KPRTGQIGKPEKEYEIILKR 116
G+T V A V+GP G ++N E A + V + K R + E +LK+
Sbjct: 40 MGNTIVEAVVFGPLEGRRRNR--EGAELMVSYSQATFATRKRREQMHDRTMIETAELLKQ 97
Query: 117 TLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSA 176
+ I I + P T + +QV+ DDG++ INA AL+DAGIPM + +A
Sbjct: 98 MYEQIIITKLLPETMIDLRVQVMQDDGSVTAAVINACTLALIDAGIPMIDI-----VSAA 152
Query: 177 ESGYC----ILDPTKLEE 190
E GY ++D K EE
Sbjct: 153 EGGYIDGKMVVDMNKDEE 170
>gi|170103316|ref|XP_001882873.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164642244|gb|EDR06501.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 247
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 93/201 (46%), Gaps = 14/201 (6%)
Query: 67 DTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTI 126
+T LA++ GP E P +A+ EV +P + K I+K L IL+
Sbjct: 25 NTHALASLSGPIEVRLAAELPSQATFEVHVRPLSNVPATEAKALASIVKSALSPSLILSR 84
Query: 127 NPNTTTSVIIQVV---HDDGALLPCAINAACAALVDAG-IPMKHLAVAICCCSAESGYCI 182
NP T +++Q + D ++ INAA A ++AG IPMK + A+ G +
Sbjct: 85 NPRTLVQLVVQALSPSRDGSGMVAAMINAATLAFLNAGSIPMKGIICAMPVGRRVGGELV 144
Query: 183 LDPTKLE-EQKMKG-FAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYF 240
+DP++ E E + G FA+LV N L +S V E G+ G+ +DD
Sbjct: 145 VDPSEEEVEVEATGCFAFLVTQN--LGHQEMTASCVHTSWKEGGV------GSSGLDDLV 196
Query: 241 HCLERGRAASAKLSDFLRRSL 261
E + A+ ++D +R SL
Sbjct: 197 RATELAKGAALVIADEMRESL 217
>gi|348504192|ref|XP_003439646.1| PREDICTED: exosome complex component MTR3-like [Oreochromis
niloticus]
Length = 274
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 90/197 (45%), Gaps = 42/197 (21%)
Query: 5 RADGRNPNQL--RPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYW 62
RADGR +Q+ RP+ C ++ +A GSA +
Sbjct: 34 RADGRRRDQVDVRPVFVRCGLVSQAKGSA------------------------------Y 63
Query: 63 VGSGDTKVLAAVYGPKAGTKKNENPEKA---SIEVIWKP-----RTGQI-GKPEKEYEII 113
+ +G+TK++ VYGP+ +K+E K + ++ + P R I G +K++ ++
Sbjct: 64 LEAGNTKLMCCVYGPRETDRKDETDMKCGRLTTDMRFAPFSCPERGSWIQGSQDKDFSLM 123
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
L +LQ L P + V + V+ + G++L A+ A AL DAGI M L + C
Sbjct: 124 LHESLQPAICLHKYPRSQIEVSVMVLENSGSVLAHAVTCASLALADAGIEMYDLVLG-CS 182
Query: 174 CSAESGYCILDPTKLEE 190
+ ++DP+ +EE
Sbjct: 183 MRQDGTSYVVDPSYMEE 199
>gi|432862333|ref|XP_004069803.1| PREDICTED: exosome complex component MTR3-like [Oryzias latipes]
Length = 272
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 87/193 (45%), Gaps = 42/193 (21%)
Query: 5 RADGRNPNQL--RPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYW 62
RADGR +Q+ RP+ C ++ +A GSA +
Sbjct: 34 RADGRQRDQVDVRPVFVRCGLVSQAKGSA------------------------------Y 63
Query: 63 VGSGDTKVLAAVYGPKAGTKKNENPEKA---SIEVIWKP-----RTGQI-GKPEKEYEII 113
+ +GDTK+L +VYGP+ +K+E K + ++ + P R I G +K + ++
Sbjct: 64 IEAGDTKLLCSVYGPRETERKDETDMKCGRLTTDMRFAPFSCPERGSWIQGSQDKNFSLM 123
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
L+ +LQ L P + V + V+ + G++ AI A AL DAGI M L + C
Sbjct: 124 LQESLQPALCLHKYPRSQIEVNVMVLENSGSVQAHAITCASLALADAGIEMYDLVLG-CS 182
Query: 174 CSAESGYCILDPT 186
+ ++DPT
Sbjct: 183 IRQDGSSYVVDPT 195
>gi|352682028|ref|YP_004892552.1| exosome complex exonuclease 1 [Thermoproteus tenax Kra 1]
gi|350274827|emb|CCC81473.1| exosome complex exonuclease 1 (RNase PH) [Thermoproteus tenax Kra
1]
Length = 245
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 78/179 (43%), Gaps = 40/179 (22%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFC 60
+E RADGR P+Q+R + + ++ A GSA
Sbjct: 10 VEGKRADGRAPDQMREVNIAVGVISNADGSA----------------------------- 40
Query: 61 YWVGSGDTKVLAAVYGPKAGTKKNEN-PEKASIEVIW-------KPRTGQIGKPEKEYEI 112
V G+T +AAVYGP+ ++ + P+KA + V + K +E EI
Sbjct: 41 -MVSYGNTVAVAAVYGPREMHPRHLSLPDKAVMRVRYHMAPFSTKDERKNPAPSRREIEI 99
Query: 113 --ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAV 169
+L+ L+ L P + V I+++ DG+ ++ AA AL DAGIPM+ L +
Sbjct: 100 SKVLREALEPAIFLEQFPRSRIDVFIEILQADGSTRVASLTAASLALADAGIPMRDLVI 158
>gi|224130470|ref|XP_002320845.1| predicted protein [Populus trichocarpa]
gi|118489833|gb|ABK96716.1| unknown [Populus trichocarpa x Populus deltoides]
gi|222861618|gb|EEE99160.1| predicted protein [Populus trichocarpa]
Length = 241
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 78/183 (42%), Gaps = 45/183 (24%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P ++R L + +A GSA + G
Sbjct: 10 RLDGRRPMEMRQLRAQIGAVAKADGSAVFEMG---------------------------- 41
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEK----------ASIEVIWKPRTGQIGKPEKEYEIIL 114
+TKV+AAVYGP+ +++ A+ + R + + E +++
Sbjct: 42 --NTKVIAAVYGPREVQNRSQQINDQALVRCEYSMANFSTGDRRRKPKGDRRSTEISLVI 99
Query: 115 KRTLQSICILT-INPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
++ ++ CILT + P + + +QV+ DG INAA AL DAGIPM+ L +
Sbjct: 100 RQAMEE-CILTNLMPRSQIDIYVQVLQADGGTRSACINAATLALADAGIPMRDL---VTS 155
Query: 174 CSA 176
CSA
Sbjct: 156 CSA 158
>gi|296412418|ref|XP_002835921.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295629718|emb|CAZ80078.1| unnamed protein product [Tuber melanosporum]
Length = 278
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 76/149 (51%), Gaps = 14/149 (9%)
Query: 62 WVGSGDTKVLAAVYGP---KAGTKKNENPEKASIEVIWKPRTG----QIGKPEK---EYE 111
+V G+TKV+ +V GP +A + +N +++V + +G + GK +K E +
Sbjct: 70 YVEHGNTKVICSVNGPIEPRAASARNSERATVTVDVCFAAFSGTDRKKRGKSDKRVLEMQ 129
Query: 112 IILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAI 171
L RT + + T++P + + + ++ DG++L +NAA ALVDAG+PM A
Sbjct: 130 SALSRTFATTLLTTLHPRSEVHISLHILSQDGSILATCVNAATLALVDAGVPMSDYVTAC 189
Query: 172 CCCS----AESGYCILDPTKLEEQKMKGF 196
S ESG +LD + EE + G
Sbjct: 190 TVASYTNPDESGEPLLDMSSAEEMDLPGI 218
>gi|213409001|ref|XP_002175271.1| exosome complex exonuclease RRP46 [Schizosaccharomyces japonicus
yFS275]
gi|212003318|gb|EEB08978.1| exosome complex exonuclease RRP46 [Schizosaccharomyces japonicus
yFS275]
Length = 214
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 58/108 (53%), Gaps = 1/108 (0%)
Query: 67 DTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTI 126
DT+VL +V GP ++E P +A+ E++ P +G G E+ + L+ + T
Sbjct: 20 DTRVLCSVNGPIEVKPRSEIPNRATFELLVSPISGVSGTKERFLASRILSVLEDAVLSTN 79
Query: 127 NPNTTTSVIIQVVH-DDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
P T V +Q+V D+ LL AINA A +DAGI MK++ AI C
Sbjct: 80 YPRTLIQVNVQIVEGDENDLLAAAINATVLAFLDAGIAMKYMPCAISC 127
>gi|297838825|ref|XP_002887294.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297333135|gb|EFH63553.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 122
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 37/43 (86%)
Query: 103 IGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 145
+ K E+EY+ ILKRTLQSIC+LT+ PN+T SVIIQVVHD G++
Sbjct: 49 LRKVEREYKTILKRTLQSICVLTVVPNSTISVIIQVVHDGGSV 91
>gi|260941676|ref|XP_002615004.1| hypothetical protein CLUG_05019 [Clavispora lusitaniae ATCC 42720]
gi|238851427|gb|EEQ40891.1| hypothetical protein CLUG_05019 [Clavispora lusitaniae ATCC 42720]
Length = 244
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 84/199 (42%), Gaps = 40/199 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR N+LR C + A+ + G +I+
Sbjct: 13 RVDGRRWNELRRFECKINT------HANSADGSSYIE----------------------- 43
Query: 65 SGDTKVLAAVYGPKAGTKKNE-NPEKASIEV---------IWKPRTGQIGKPEKEYEIIL 114
G+TKV+ V+GPK + +++ N +A+IE+ + + + + K E + L
Sbjct: 44 QGNTKVMCMVHGPKEPSLRSQSNQNRATIEINLNVASFSTLERKKRNRTEKRMVELKTTL 103
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
+RT + + + P T V +QV+ DG +L NA ALVDAGI M A+
Sbjct: 104 ERTFEQSILAHLYPRTLIEVHVQVLAQDGGMLASITNAITLALVDAGIAMYDYVSAVNVA 163
Query: 175 SAESGYCILDPTKLEEQKM 193
+ +LD LEE M
Sbjct: 164 LHDQ-TPLLDLNTLEENDM 181
>gi|324522716|gb|ADY48116.1| Exosome complex exonuclease RRP41 [Ascaris suum]
Length = 249
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 82/202 (40%), Gaps = 46/202 (22%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P+Q+R + + +A GSA QG
Sbjct: 10 RLDGRKPHQIRNINYKLGVYTQADGSAYLEQG---------------------------- 41
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEK-------------ASIEVIWKPRTGQIGKPEKEYE 111
+TKVL AVYGP ++N E ++ E +PR + E+
Sbjct: 42 --NTKVLCAVYGPHEPRQRNRTQEDRCTVNCQYSMATFSTNERKERPRGD---RRSMEFA 96
Query: 112 IILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAI 171
++++ ++ ++ P+ + +++ DG+ L +NAA AL DAG+PM+ L A
Sbjct: 97 RLMEKAFETAILVENYPHAQIDIFCELLQADGSHLAACVNAATLALADAGVPMRGLVAAA 156
Query: 172 CCCSAESGYCILDPTKLEEQKM 193
C A G D + EE +
Sbjct: 157 SCACALDGTPCADVSAREESNV 178
>gi|71018287|ref|XP_759374.1| hypothetical protein UM03227.1 [Ustilago maydis 521]
gi|46099099|gb|EAK84332.1| hypothetical protein UM03227.1 [Ustilago maydis 521]
Length = 273
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 72/157 (45%), Gaps = 15/157 (9%)
Query: 60 CYWVGSGDTKVLAAVYGPK-AGTKKNENPEKASIEVIWKPRTGQIGKPEK---------- 108
C + G T V A V+GP+ A + N ++AS+ V + G E+
Sbjct: 40 CAQITQGLTIVSATVFGPREARSGANVMHDRASVNV--EVSVAPWGSMERRRRNRGDRRL 97
Query: 109 -EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHL 167
E+ +K T + + + P + + +QV DG +LP AINA+ AL+DAGI M+
Sbjct: 98 VEFANSIKSTFEPVIHTHLYPRSQIDIFVQVHQQDGGVLPAAINASTLALLDAGIAMQDF 157
Query: 168 AVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNS 204
VA C S +LD + EEQ + V P +
Sbjct: 158 -VASVSCGIHSTSAMLDLSNTEEQDLPHVTVAVLPRT 193
>gi|320167599|gb|EFW44498.1| exosome component 4 [Capsaspora owczarzaki ATCC 30864]
Length = 252
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 72/181 (39%), Gaps = 43/181 (23%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR PN+LR + + +A GSA ++
Sbjct: 15 RIDGRRPNELRRIQARVGVFMQADGSA------------------------------YIE 44
Query: 65 SGDTKVLAAVYGPKAGTKKNE----------NPEKASIEVIWKPRTGQIGKPEKEYEIIL 114
G+TK+LA VYGP ++KN+ AS + + + K + +
Sbjct: 45 QGNTKILATVYGPHEVSRKNKPLHDRAIINCEYRVASFATAERKKPVRTDKRALDLAAAV 104
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
+ + + + P + + +QV+ DG INAA AL+DAGI MK +C C
Sbjct: 105 RGAFEGAVMTQLYPRSQIDIFLQVLQSDGGNRAVCINAATLALMDAGIAMKDF---VCAC 161
Query: 175 S 175
S
Sbjct: 162 S 162
>gi|240964212|ref|XP_002400824.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp41, putative
[Ixodes scapularis]
gi|215490745|gb|EEC00386.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp41, putative
[Ixodes scapularis]
Length = 157
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 83/168 (49%), Gaps = 17/168 (10%)
Query: 106 PEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMK 165
++ E +++ TL+++ ++ ++P T S+ +Q +H+DG+LL C INAAC A +DA I MK
Sbjct: 5 SDRLVEKVVRSTLETVMLVALHPRTCISISLQELHNDGSLLACCINAACLAAIDAAIAMK 64
Query: 166 HLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGI 225
A+ +G +LDP K +E++ + F E + +
Sbjct: 65 CQVAAVSAAITHTGIVVLDPNKKQEEEARATCTFSF-----------------ESRDSKV 107
Query: 226 ITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGDLSKAE 273
+++ T G S ++ CL RAA+A + F R + + + L E
Sbjct: 108 VSTRTTGRFSAQEFQKCLSACRAAAADIFAFYRDAFRRRYSKCLEVGE 155
>gi|169595492|ref|XP_001791170.1| hypothetical protein SNOG_00485 [Phaeosphaeria nodorum SN15]
gi|111070860|gb|EAT91980.1| hypothetical protein SNOG_00485 [Phaeosphaeria nodorum SN15]
Length = 251
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 88/210 (41%), Gaps = 51/210 (24%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR N+LR + S A GS+ ++
Sbjct: 14 RLDGRRWNELRRIHAQISTQAAADGSS------------------------------YLE 43
Query: 65 SGDTKVLAAVYGPKAGTKK-----NENPEKASIEVIWKPRTGQ-------IGKPEKEYEI 112
G+TK+L +V GP G + N K +E+ + +G K KE E
Sbjct: 44 MGNTKILVSVTGPAEGKQAGQRGGNGGQAKVEVEINFAGFSGMERRRRGGGDKRSKEMEH 103
Query: 113 ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAIC 172
++ + + +L + P++T ++ I ++ DG+LL INA+ AL+DAGIPM VA
Sbjct: 104 CVRSAFEGVLLLHLYPHSTITLNIHIISQDGSLLAACINASTLALIDAGIPMTDYLVACT 163
Query: 173 CCSAESGYC---------ILDPTKLEEQKM 193
S+ S +LD LEEQ++
Sbjct: 164 AASSASSSAADNASAEDPLLDLNTLEEQEL 193
>gi|297801466|ref|XP_002868617.1| hypothetical protein ARALYDRAFT_493864 [Arabidopsis lyrata subsp.
lyrata]
gi|297838301|ref|XP_002887032.1| hypothetical protein ARALYDRAFT_475740 [Arabidopsis lyrata subsp.
lyrata]
gi|297314453|gb|EFH44876.1| hypothetical protein ARALYDRAFT_493864 [Arabidopsis lyrata subsp.
lyrata]
gi|297332873|gb|EFH63291.1| hypothetical protein ARALYDRAFT_475740 [Arabidopsis lyrata subsp.
lyrata]
Length = 100
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 37/43 (86%)
Query: 103 IGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 145
+ K E+EY+ ILKRTLQSIC+L + PN+TTSVIIQVVHD G++
Sbjct: 27 LRKVEREYKTILKRTLQSICVLKVVPNSTTSVIIQVVHDGGSV 69
>gi|52352385|gb|AAU43674.1| ribonuclease PH [uncultured archaeon GZfos26D8]
Length = 247
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 88/221 (39%), Gaps = 45/221 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR ++LRP+ +L RA GS CY
Sbjct: 13 RLDGRGFDELRPIKIEVGVLKRADGS--------------------------CYLEL--- 43
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTG--------QIGKPEKEYEI--IL 114
GD KV+AAVYGP+ ++ K ++ V ++ + G + EI +
Sbjct: 44 -GDNKVIAAVYGPREMHPRHAQDAKMAV-VKFRYNMAPFSTDDRKRPGPDRRSVEISKVC 101
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
+ + + + P T V ++++ D INAA AL DAGIPMK L +I
Sbjct: 102 REAFDPVIMRELYPKTGIEVYVELLQSDAGTRTAGINAASIALADAGIPMKDLVSSIAVG 161
Query: 175 SAESGYCILDPTKLEEQKMKG---FAYLVFPNSILSVLPEG 212
G +LD E+ + A + N+I ++ +G
Sbjct: 162 KI-GGEMVLDLNAAEDNNGEADMPIAMIARTNTITALQMDG 201
>gi|344305201|gb|EGW35433.1| hypothetical protein SPAPADRAFT_58653 [Spathaspora passalidarum
NRRL Y-27907]
Length = 242
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 77/200 (38%), Gaps = 41/200 (20%)
Query: 5 RADGRNPNQLRPLACSCSIL-HRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWV 63
R DGR N+LR C + H A GS+ +V
Sbjct: 10 RIDGRRWNELRRFECKINTHPHSADGSS------------------------------YV 39
Query: 64 GSGDTKVLAAVYGP-KAGTKKNENPEKASIEV---------IWKPRTGQIGKPEKEYEII 113
G+TK++ V GP + K N +++EV + + + K E +
Sbjct: 40 EQGNTKIICMVRGPMEPAMKSQVNATSSTVEVNVSLANFSTFERKKRSKTDKRITELKTT 99
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
L+RT + + P T SV +QV+ DG LL NA AL+DAGI M +
Sbjct: 100 LERTFNECIMGHLYPRTLISVTVQVLAQDGGLLAAMTNAVTLALIDAGIAMYDYVSGVNA 159
Query: 174 CSAESGYCILDPTKLEEQKM 193
+ +LD LEE M
Sbjct: 160 GLYDQTSALLDLNTLEENDM 179
>gi|189208598|ref|XP_001940632.1| exosome complex exonuclease RRP41 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187976725|gb|EDU43351.1| exosome complex exonuclease RRP41 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 250
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 76/177 (42%), Gaps = 41/177 (23%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR N+LR + S A GS+ QG
Sbjct: 14 RLDGRRWNELRRIHAQISTQAAADGSSYLEQG---------------------------- 45
Query: 65 SGDTKVLAAVYGPKAGTKKNEN---PEKASIEVIW--------KPRTGQIGKPEKEYEII 113
+TK+L +V GP G + + ++A +EV + R + K E E
Sbjct: 46 --NTKILVSVTGPHEGRQSGQRGGADKQAKVEVEINFAGFSGVERRKRKSDKRTSEMEHC 103
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVA 170
++ + + +L + P++T ++ I +V DG+LL INA+ AL+DAGIPM VA
Sbjct: 104 IRSAFEGVLLLHLYPHSTITLNIHIVSQDGSLLAACINASTLALIDAGIPMTDYLVA 160
>gi|308491849|ref|XP_003108115.1| CRE-TIN-9.2 protein [Caenorhabditis remanei]
gi|308248963|gb|EFO92915.1| CRE-TIN-9.2 protein [Caenorhabditis remanei]
Length = 372
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 88/212 (41%), Gaps = 46/212 (21%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P Q+R + + A GS CY +
Sbjct: 126 RIDGRRPAQIRNINTRLGLNRNAEGS--------------------------CYLEH--- 156
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRT----GQIGKPE---KEYEI--ILK 115
G+TKVL AVYGP G ++ +I + T + +P K EI +L+
Sbjct: 157 -GNTKVLCAVYGPYEGKASKRLEDRCAIVCQYSTTTFSGLERKNRPRGDRKSTEISRLLE 215
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
+ +S+ + P + + +V+ DG+ L +NA AL DAGIPMK +A A C
Sbjct: 216 KAFESVILTESFPRSQIDIFCEVIQGDGSNLAACVNATSLALADAGIPMKGIASAATCGI 275
Query: 176 AESGYCILDPTKLEEQKM------KGFAYLVF 201
++ I+D T EE + GF+ ++
Sbjct: 276 VDAKP-IVDLTSREETDLLPRVTVSGFSSIIL 306
>gi|322708621|gb|EFZ00198.1| hypothetical protein MAA_03975 [Metarhizium anisopliae ARSEF 23]
Length = 254
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 86/194 (44%), Gaps = 34/194 (17%)
Query: 70 VLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPN 129
V AAV GP +++ENP +A I+V+ +P G G E++ E +L+ L+ + + P
Sbjct: 30 VTAAVNGPIEAPRRDENPFEALIDVVVRPAAGVGGTAERQIESMLQAALRQLIPIRNFPR 89
Query: 130 TTTSVIIQVV---------------HDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
T V +Q++ + A++P +AA L+ A IP+K +A A
Sbjct: 90 CTIQVTLQIMEAPENAYQNTKLLQPQQNLAIIPALFHAAILGLLTAAIPLKTIATATTIA 149
Query: 175 S-AESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGA 233
A SG I+DP+ E K L F + +L E S G+
Sbjct: 150 IPAGSGALIIDPSTEESAKATSLHALAFTSHDELLLAESS------------------GS 191
Query: 234 MSVDDYFHCLERGR 247
S++D+ LE G+
Sbjct: 192 FSIEDWDRVLETGQ 205
>gi|167393565|ref|XP_001740629.1| exosome complex exonuclease RRP41 [Entamoeba dispar SAW760]
gi|165895202|gb|EDR22949.1| exosome complex exonuclease RRP41, putative [Entamoeba dispar
SAW760]
Length = 238
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 81/198 (40%), Gaps = 49/198 (24%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR ++R + L+ + GSA V
Sbjct: 10 RLDGRRTTEMRKCEMEINFLNTSDGSAR------------------------------VR 39
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIW--------KPRTGQIGKPEKEYEIILKR 116
G+T V A V+GP G ++N E A + V + K R + E +LK+
Sbjct: 40 MGNTIVEAVVFGPLEGRRRNR--EGAELMVSYSQATFATRKRREQMHDRTMIETAELLKQ 97
Query: 117 TLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSA 176
+ + I + P T + +Q++ DDG++ INA AL+DAGIPM + +A
Sbjct: 98 MYEQVIITKLLPETMIDLRVQIMQDDGSVTAAVINACTLALIDAGIPMIDI-----VSAA 152
Query: 177 ESGYC----ILDPTKLEE 190
E GY ++D K EE
Sbjct: 153 EGGYIDGKMVVDMNKDEE 170
>gi|388851424|emb|CCF54826.1| probable exosome complex exonuclease rrp41 [Ustilago hordei]
Length = 269
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 86/216 (39%), Gaps = 51/216 (23%)
Query: 5 RADGRNPNQLRPLACSC--SILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYW 62
R DGR +LR +A S A GSA +QG
Sbjct: 13 RVDGRKQFELRSIAIQLGGSPDTSADGSAQITQGL------------------------- 47
Query: 63 VGSGDTKVLAAVYGPK-AGTKKNENPEKASI--EVIWKPRTGQIGKPEK----------- 108
T V A V+GP+ A T N ++AS+ EV P G E+
Sbjct: 48 -----TTVSATVFGPREARTGANMIHDRASVNVEVCLAP----WGSTERRRRNRGDRRLL 98
Query: 109 EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLA 168
E+ +K T + + + P + + +QV DG +LP AINAA AL+DAGI M+
Sbjct: 99 EFASSIKSTFEPVIHTHLYPRSQIDIFVQVHQQDGGVLPAAINAATLALLDAGIAMQDF- 157
Query: 169 VAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNS 204
VA C S +LD + EE + V P +
Sbjct: 158 VASVSCGIHSTSAMLDLSNAEEMDLPHVTVAVLPRT 193
>gi|410923699|ref|XP_003975319.1| PREDICTED: exosome complex component RRP41-like [Takifugu rubripes]
Length = 245
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 74/182 (40%), Gaps = 44/182 (24%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +LR + + +A GSA QG
Sbjct: 13 RIDGRKATELRKIQARMGVFAQADGSAYLEQG---------------------------- 44
Query: 65 SGDTKVLAAVYGPKA--GTKKNENPEKASIEVIW---------KPRTGQIGKPEKEYEII 113
+TKVLA VYGP G++ ++A I + + R + E +
Sbjct: 45 --NTKVLAVVYGPHEMRGSRSRARHDRAVINCQYSMATFSTAERKRRPHGDRKSTEMSLH 102
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
LK+T ++ + + P + + ++++ DG +NAA A++DAGIPM+ +C
Sbjct: 103 LKQTFEAAVMTQLFPRSQIDIYVKILQSDGGNYSVCVNAATLAVIDAGIPMRDY---VCA 159
Query: 174 CS 175
C+
Sbjct: 160 CT 161
>gi|409043264|gb|EKM52747.1| hypothetical protein PHACADRAFT_31210 [Phanerochaete carnosa
HHB-10118-sp]
Length = 266
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 86/210 (40%), Gaps = 41/210 (19%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R+DGR +LR + S A GSA + G
Sbjct: 14 RSDGRRQFELRDITMDLSQRGTADGSAMITHGL--------------------------- 46
Query: 65 SGDTKVLAAVYGPKAGTKKNEN-PEKA--SIEVIWKP-RTGQIGKPEK------EYEIIL 114
T+VL +V+GP+ +++ ++A ++EV P TG+ K + E+ +
Sbjct: 47 ---TQVLVSVFGPREAKMRSQTFHDRAVLNVEVNIAPFSTGERRKRNRGDKRILEFASAI 103
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
K T + + + P + + + V+ DG LL INA ALV AGIP+ L A+
Sbjct: 104 KSTFEPVVQTNLYPRSQIDIYVHVLQQDGGLLQAGINATTLALVSAGIPLLDLVCAV-TG 162
Query: 175 SAESGYCILDPTKLEEQKMKGFAYLVFPNS 204
S +LD T LEE + + P +
Sbjct: 163 GVHSTSPMLDLTTLEENDIPHLTVAIMPKT 192
>gi|52548823|gb|AAU82672.1| ribonuclease PH [uncultured archaeon GZfos19A5]
Length = 247
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 95/238 (39%), Gaps = 47/238 (19%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR ++LRP+ +L RA GS CY
Sbjct: 13 RLDGRGFDELRPIKIEVGVLKRADGS--------------------------CYLEL--- 43
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTG--------QIGKPEKEYEI--IL 114
GD KV+AAVYGP+ ++ K ++ V ++ + G + EI +
Sbjct: 44 -GDNKVIAAVYGPREMHPRHAQDAKMAV-VKFRYNMAPFSTDDRKRPGPDRRSVEISKVC 101
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
+ + + + P V ++++ D INAA AL DAGIPMK L +I
Sbjct: 102 REAFDPVIMRELYPKMGIEVYVELLQSDAGTRTAGINAASIALADAGIPMKDLVSSIAVG 161
Query: 175 SAESGYCILDPTKLEEQKMKG---FAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSV 229
+G +LD E+ + A + N+I ++ +G + E E G+ +V
Sbjct: 162 KI-NGEMVLDLNAAEDNNGEADMPIAMIARTNTITALQMDGR--LTKEEFERGLKLAV 216
>gi|356542629|ref|XP_003539769.1| PREDICTED: exosome complex component MTR3-like [Glycine max]
Length = 254
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 79/200 (39%), Gaps = 38/200 (19%)
Query: 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCY 61
++ R DGR+ +Q RP ++ A GSA
Sbjct: 29 DLARPDGRSFHQCRPAFFRTGAVNAASGSA------------------------------ 58
Query: 62 WVGSGDTKVLAAVYGPKAGTKKNENPE------KASIEVIWKPRTGQIGKPEKEYEIILK 115
+ G+TKV+ +V+GP+ K + S P GQ G KEY +L
Sbjct: 59 YAEVGNTKVIVSVFGPRESKKAMMYSDIGRLNCNVSFTTFATPIRGQ-GSDHKEYSSMLH 117
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
+ L+ IL P TT V V+ G+ LP I+ A AL DAGI M L VA S
Sbjct: 118 KALEGAIILETFPKTTVDVFALVLESSGSDLPVVISCASLALADAGIMMYDL-VASVSVS 176
Query: 176 AESGYCILDPTKLEEQKMKG 195
+ ++DP EE G
Sbjct: 177 CFNKNLVIDPVLEEENGQDG 196
>gi|302672677|ref|XP_003026026.1| hypothetical protein SCHCODRAFT_80065 [Schizophyllum commune H4-8]
gi|300099706|gb|EFI91123.1| hypothetical protein SCHCODRAFT_80065 [Schizophyllum commune H4-8]
Length = 259
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 93/212 (43%), Gaps = 45/212 (21%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R+DGR +LR + S A GSA S G
Sbjct: 14 RSDGRKQYELRDMTIDLSPRASADGSALVSHGL--------------------------- 46
Query: 65 SGDTKVLAAVYGPKAGTKKNENP-EKASI--EVIWKP-RTGQIGKPE------KEYEIIL 114
T+VL +VYGP+ +++++ ++A+I EV P +G+ K +E +
Sbjct: 47 ---TQVLVSVYGPREPKQRSQSAHDRATINVEVGTAPFSSGERRKRGRGDKRTQELCYTV 103
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
++T + + + +I P +T V I ++ DG+L+P INA AL+ AG+P+ +C
Sbjct: 104 QQTFEPVVLTSIYPRSTIDVFITILQQDGSLIPACINATTLALICAGVPLLDF---VCAV 160
Query: 175 SA--ESGYCILDPTKLEEQKMKGFAYLVFPNS 204
SA +LD T LEE + V P +
Sbjct: 161 SAGVHDTESMLDLTTLEENDLPWVNAAVMPKT 192
>gi|213407144|ref|XP_002174343.1| exosome complex exonuclease RRP41 [Schizosaccharomyces japonicus
yFS275]
gi|212002390|gb|EEB08050.1| exosome complex exonuclease RRP41 [Schizosaccharomyces japonicus
yFS275]
Length = 243
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 82/199 (41%), Gaps = 47/199 (23%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR N++R C + AHGS+ FIQ
Sbjct: 14 RQDGRRWNEMREFDCRIGVEKTAHGSS-------FIQ----------------------- 43
Query: 65 SGDTKVLAAVYGP-KAGTKKNENPEKASIEV---------IWKPRTGQIGKPEKEYEIIL 114
G+T+VL V GP + K EKA I V I + + + K +E + +
Sbjct: 44 HGNTRVLCNVNGPSEPYIKGKSKQEKAFINVELNFAPFSLIDRKKRHRSDKRIQEQCVAI 103
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
+RT + + + P + S+ + V+ DDG + INAA AL+DAGI M V CC
Sbjct: 104 QRTFEQAIQVELYPKSQISISLNVLEDDGGAIATCINAATLALIDAGIAM----VDYVCC 159
Query: 175 SAESGY---CILDPTKLEE 190
+ Y +LD EE
Sbjct: 160 ATAGIYETQVLLDLNTNEE 178
>gi|344302854|gb|EGW33128.1| hypothetical protein SPAPADRAFT_136405 [Spathaspora passalidarum
NRRL Y-27907]
Length = 219
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 91/209 (43%), Gaps = 21/209 (10%)
Query: 66 GDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILT 125
G+TKV+A+V GP ++ E P +AS+E+I +P G EK E L+ LQSI I
Sbjct: 22 GNTKVIASVSGPIEPKQRQELPNQASLEIIIRPAKGLSTTREKLLEDKLRALLQSIIIRY 81
Query: 126 INPNTTTSVIIQVVHDD------GALLPCAINAACAALVDAGIPMKHLAVAICCCSAESG 179
P S+++Q + D L AIN AL+DA I + ++ C E+
Sbjct: 82 KYPRQLISIVVQFLVTDEDPKFTANELNAAINCCYFALIDADIALYSSFASVVSCITENK 141
Query: 180 YCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDY 239
I +PT E + + F + EG + I+ + G ++
Sbjct: 142 -LIQNPTGKELSQSDSHHVVCFN------IQEGKA--------DKILLLESQGEFVQEEL 186
Query: 240 FHCLERGRAASAKLSDFLRRSLQSKLPGD 268
F+ L + + +L R+ L+ K+ D
Sbjct: 187 FNLLSESVSNAEELHTLQRKYLKEKIDQD 215
>gi|307174738|gb|EFN65093.1| Exosome complex exonuclease RRP41 [Camponotus floridanus]
Length = 274
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 111/252 (44%), Gaps = 63/252 (25%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R+DGR +LR + + +A GSA ++
Sbjct: 14 RSDGRRALELRQIRLRMGVFGQADGSA------------------------------YIE 43
Query: 65 SGDTKVLAAVYGP-KAGTKKNENPEKASIE-----VIWKPRTGQIGK------PEKEYEI 112
G+TKVLAAVYGP + + + N KA + ++ +G+ + +E
Sbjct: 44 HGNTKVLAAVYGPHQPKSNISRNSTKAFVNCQYSMAVFSFTSGERKRRPRGDWKSQERSA 103
Query: 113 ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAIC 172
L+ +++I L + P + + ++V+ DG+ ++NA+ AL+DAGIP+K+ AV C
Sbjct: 104 QLRHAMEAIIHLELYPRSQIDIFVEVLQVDGSDYCASVNASTLALIDAGIPIKNYAVG-C 162
Query: 173 CCSAESGYCILDPTKLEEQKMKGFAYLVF---------PNSILSV--LPEGSSLVQGEPM 221
S +++ EE++ K A V P LSV LPE ++ V+ +
Sbjct: 163 TVS------LINKLTTEEEEDKTLATGVLDANFVEECSPGVTLSVVALPETNNEVEVDG- 215
Query: 222 EHGIITSVTHGA 233
G+I V HGA
Sbjct: 216 -SGLIV-VAHGA 225
>gi|346322418|gb|EGX92017.1| ribosomal protein S5 domain 2-type fold domain containing protein
[Cordyceps militaris CM01]
Length = 252
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 100/226 (44%), Gaps = 31/226 (13%)
Query: 70 VLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPN 129
V +AV GP +++ENP +A I+V +P G G E+ E IL+R L+ + + P
Sbjct: 30 VTSAVNGPIEAQRRDENPFEAIIDVNIRPAAGVGGTAERVLESILQRALRQLIPIRNFPR 89
Query: 130 TTTSVIIQVVHD---------------DGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
+ + +QV + A++P ++AA +L+ IP+K +A A+
Sbjct: 90 SMIQITLQVTETPENAYANTKVVQAQLNLAIIPVLLHAAILSLLTGAIPLKTIATAVTLA 149
Query: 175 --SAESGYCILDPTKLEEQKMKGFAYLVFP--NSILSVLPEGSSLVQGEPMEHGIITSVT 230
A+ G + DP+ E + L F + +L +G+ V E + +
Sbjct: 150 VRGADGGGIVADPSAREADTARSLHVLGFTADDELLLAESQGTFTVD----EWAAVLAAG 205
Query: 231 HGA------MSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGDLS 270
A +D+ + G AAS + F+R +++K+ D+S
Sbjct: 206 QEACGRAAPQGIDEDAAMADGGEAASVRA--FIRSVMETKIAADMS 249
>gi|145520971|ref|XP_001446341.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124413818|emb|CAK78944.1| unnamed protein product [Paramecium tetraurelia]
Length = 227
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 84/198 (42%), Gaps = 34/198 (17%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFC 60
M + R DGRN Q+R + +I GS + QG
Sbjct: 1 MSLKRQDGRNLQQMRNIEFKLAIDLSVDGSCLYKQGL----------------------- 37
Query: 61 YWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEII---LKRT 117
T+V+ V GP+A T+ + S+ + + K +K+Y + LK +
Sbjct: 38 -------TEVICLVQGPRAKTQSELLLIEYSVSPFSNIESKRSSKFDKDYSMFAENLKES 90
Query: 118 LQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAE 177
+++ IL N + S+ + V+ +DG+ NA AL+DAG+ MK V++ +
Sbjct: 91 FENLIILDENGKSEISISVCVIQNDGSSKSAVFNAITLALLDAGVSMKDFLVSV-TVGLD 149
Query: 178 SGYCILDPTKLEEQKMKG 195
G I+D T+ E + +G
Sbjct: 150 QGNLIVDLTQEESKTAQG 167
>gi|328712784|ref|XP_001945013.2| PREDICTED: exosome complex exonuclease RRP41-like [Acyrthosiphon
pisum]
Length = 249
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 90/220 (40%), Gaps = 55/220 (25%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +LR + C + ++ GSA QG
Sbjct: 10 RTDGRRSGELRRIRCKMGVFNQPDGSAYLEQG---------------------------- 41
Query: 65 SGDTKVLAAVYGP-KAGTKKNENPEKASI-------------EVIWKPRTGQIGKPEKEY 110
+TKV+AA+YGP + T + + P +++ E +PR + E
Sbjct: 42 --NTKVVAAIYGPHEIRTNRAKAPNDSAVINCQYSMATFSRSERKRRPRDNK----SAEL 95
Query: 111 EIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVA 170
+ LK+ + + + P + + +QV+ DG +NAA AL+DAGI M+ ++
Sbjct: 96 TLHLKQAMATAIKTDLYPKSQIDIFVQVLQSDGGNYSVCVNAATLALIDAGIAMEEFVIS 155
Query: 171 ICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLP 210
A ++D + LEE M G P+ +++LP
Sbjct: 156 CTSSLANGETPLVDISHLEE-TMGG------PSLTVAILP 188
>gi|254570999|ref|XP_002492609.1| 3'-to-5' phosphorolytic exoribonuclease that is a subunit of the
exosome [Komagataella pastoris GS115]
gi|238032407|emb|CAY70430.1| 3'-to-5' phosphorolytic exoribonuclease that is a subunit of the
exosome [Komagataella pastoris GS115]
gi|328353384|emb|CCA39782.1| exosome complex component RRP41 [Komagataella pastoris CBS 7435]
Length = 246
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 10/141 (7%)
Query: 62 WVGSGDTKVLAAVYGPKAGTKKNENPEKASIEV---------IWKPRTGQIGKPEKEYEI 112
+V +G+TK++ + GP T+ N +K S+++ + + + + +E
Sbjct: 38 YVEAGNTKIVCLLNGPHEPTRSQMNTQKGSLDIKLHVSPFSTTERRKVTRNDRRIQELST 97
Query: 113 ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAIC 172
ILK T + + IL P T V ++V+ DG LL NA ALVDAGI + A+
Sbjct: 98 ILKNTFEQVVILKNYPRTIIEVNVRVLAQDGGLLAACCNAITLALVDAGIALYDYISAVS 157
Query: 173 CCSAESGYCILDPTKLEEQKM 193
++ +LD +LEEQ +
Sbjct: 158 AGVFDN-QILLDLNRLEEQDL 177
>gi|308473330|ref|XP_003098890.1| hypothetical protein CRE_31358 [Caenorhabditis remanei]
gi|308268029|gb|EFP11982.1| hypothetical protein CRE_31358 [Caenorhabditis remanei]
Length = 214
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 79/186 (42%), Gaps = 39/186 (20%)
Query: 13 QLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLA 72
+LR + C S L A GSA +SQG C W A
Sbjct: 4 RLREMRCELSFLKNADGSACFSQGST---------------------CIW---------A 33
Query: 73 AVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEI---ILKRTLQSICILTINPN 129
+ GP G N E ++++ ++ G + ++ + I++ T+ L + P+
Sbjct: 34 SCSGPGDGHASKANEEAMTLDISYRANCG-----DNKFSVLNNIIQSTISKAINLELFPH 88
Query: 130 TTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLE 189
TT +V I + DDG++ AIN AC AL+D G+P + + + + I+DPT +
Sbjct: 89 TTIAVTIHGIQDDGSIGAVAINGACFALLDNGMPFEAVFCGVLVVRLKDEL-IIDPTTKQ 147
Query: 190 EQKMKG 195
E G
Sbjct: 148 EASSTG 153
>gi|297793375|ref|XP_002864572.1| hypothetical protein ARALYDRAFT_495957 [Arabidopsis lyrata subsp.
lyrata]
gi|297310407|gb|EFH40831.1| hypothetical protein ARALYDRAFT_495957 [Arabidopsis lyrata subsp.
lyrata]
Length = 108
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/39 (74%), Positives = 33/39 (84%)
Query: 105 KPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 143
K E+EYE ILKRTLQ+IC+LT+ NT TSVIIQVVHD G
Sbjct: 37 KVEREYETILKRTLQNICVLTVVTNTATSVIIQVVHDGG 75
>gi|307214803|gb|EFN89690.1| Exosome complex exonuclease RRP41 [Harpegnathos saltator]
Length = 271
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 107/249 (42%), Gaps = 61/249 (24%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +LR + + +A GSA ++
Sbjct: 14 RVDGRRALELRQIRIRMGVFGQADGSA------------------------------YIE 43
Query: 65 SGDTKVLAAVYGP-KAGTKKNENPEKASIE-----VIWKPRTGQIGK------PEKEYEI 112
G+TKVLAAVYGP + +N KA + ++ +G+ + +E I
Sbjct: 44 HGNTKVLAAVYGPHQPRNNIAKNTTKAIVNCQYSMAVFSFTSGERKRRPRGDWKSQERSI 103
Query: 113 ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAIC 172
L+ +++I L + P + + ++++ DG+ ++NAA AL+DAGIP+K+ AV
Sbjct: 104 QLRHAMEAIIHLELYPRSQIDIFVEILQVDGSDYCASVNAATLALIDAGIPIKNYAVG-- 161
Query: 173 CCSAESGYCILDPTKLEEQKM-------KGFAYLVFPNSILSV--LPEGSSLVQGEPMEH 223
C A I P+ E+ K F P LSV LP G+S V E E+
Sbjct: 162 CTVA----LINTPSTDEQDKTLAGGVLDANFVEEYSPGVTLSVVALP-GTSEV--ESNEN 214
Query: 224 GIITSVTHG 232
G+I V HG
Sbjct: 215 GLIV-VAHG 222
>gi|239788290|dbj|BAH70834.1| ACYPI001085 [Acyrthosiphon pisum]
Length = 213
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 90/220 (40%), Gaps = 55/220 (25%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +LR + C + ++ GSA QG
Sbjct: 10 RTDGRRSGELRRIRCKMGVFNQPDGSAYLEQG---------------------------- 41
Query: 65 SGDTKVLAAVYGP-KAGTKKNENPEKASI-------------EVIWKPRTGQIGKPEKEY 110
+TKV+AA+YGP + T + + P +++ E +PR + E
Sbjct: 42 --NTKVVAAIYGPHEIRTNRAKAPNDSAVINCQYSMATFSRSERKRRPRDNK----SAEL 95
Query: 111 EIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVA 170
+ LK+ + + + P + + +QV+ DG +NAA AL+DAGI M+ ++
Sbjct: 96 TLHLKQAMATAIKTDLYPKSQIDIFVQVLQSDGGNYSVCVNAATLALIDAGIAMEEFVIS 155
Query: 171 ICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLP 210
A ++D + LEE M G P+ +++LP
Sbjct: 156 CTSSLANGETPLVDISHLEE-TMGG------PSLTVAILP 188
>gi|224132514|ref|XP_002328307.1| predicted protein [Populus trichocarpa]
gi|222837822|gb|EEE76187.1| predicted protein [Populus trichocarpa]
Length = 263
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 87/205 (42%), Gaps = 29/205 (14%)
Query: 66 GDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRT------GQIGKPEKEYEIILKRTLQ 119
G+TKV+ +V+GP+ K +K + T GQ G KE+ +L + L+
Sbjct: 72 GNTKVIVSVFGPRESKKAMMYSDKGKLNCNVSYTTFATTVHGQ-GSDNKEFSTMLHKALE 130
Query: 120 SICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHL--AVAICCCSAE 177
+L P TT V V+ G+ LP I+ A AL DAGI M L V++ C
Sbjct: 131 GAVMLETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMMYDLVAGVSVSCLGRN 190
Query: 178 SGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVD 237
I+DPT LEE+ + +GS ++ P + I G S
Sbjct: 191 ---LIIDPT-LEEESFQ----------------DGSLMITCMPSHYEITQLTITGEWSTA 230
Query: 238 DYFHCLERGRAASAKLSDFLRRSLQ 262
+ ++ A +KL+ LR L+
Sbjct: 231 NLNEAMQLCLDACSKLAKILRSCLK 255
>gi|348674314|gb|EGZ14133.1| hypothetical protein PHYSODRAFT_512336 [Phytophthora sojae]
Length = 252
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 71/154 (46%), Gaps = 11/154 (7%)
Query: 62 WVGSGDTKVLAAVYGPKAGTKKNENPEKAS---IEVIWKPRTGQIGKPEK-------EYE 111
+V G T+V+ AVYGP+ T+ K +V + P ++ + E+ E
Sbjct: 55 YVEMGRTRVVCAVYGPRTDTRARREFSKDGQLVCDVKYAPFADKLTRRERGQDPDEMELS 114
Query: 112 IILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAI 171
I++ L +L P SV + V+ D+G + AIN A AL DA + M + A
Sbjct: 115 AIVEEALAPAVMLHKLPKCIVSVFVTVLEDEGGVFAAAINCASLALADAAVEMYDVVTA- 173
Query: 172 CCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSI 205
+G +LDP++ EEQ+ G L + S+
Sbjct: 174 SSAGIVNGSVVLDPSREEEQRGDGKLALAYMPSM 207
>gi|330508837|ref|YP_004385265.1| exosome complex exonuclease 1 [Methanosaeta concilii GP6]
gi|328929645|gb|AEB69447.1| exosome complex exonuclease 1 [Methanosaeta concilii GP6]
Length = 253
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 72/265 (27%), Positives = 107/265 (40%), Gaps = 58/265 (21%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR ++LRP+ IL RA GS CY +
Sbjct: 17 RLDGRRADELRPVKIEVGILARADGS--------------------------CY----IE 46
Query: 65 SGDTKVLAAVYGP------------KAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEI 112
G KV+AAVYGP +A + N S+E +P G + YE+
Sbjct: 47 MGGNKVIAAVYGPREVHPRHLQEVTRAIVRYRYNMASFSVEERKRP-----GPDRRSYEL 101
Query: 113 --ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVA 170
+ + L+ + + + P + V ++V+ D INAA AL DAGIPMK + ++
Sbjct: 102 SKVSREALEPVILTSFFPRSVIDVFVEVLQADAGTRTAGINAAAVALADAGIPMKSM-IS 160
Query: 171 ICCCSAESGYCILDPTKLEEQ-KMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSV 229
C +LDP K E+ + PN ++++ +L P E G +V
Sbjct: 161 SCAAGKVGDTIVLDPMKEEDNFGQADLPIAMTPNGDITLMQMDGNLT---PDEFG--QAV 215
Query: 230 THGAMSVDDYFHCLERGRAASAKLS 254
T D + L+R RA AK S
Sbjct: 216 TMAMKGAKDIYE-LQR-RALVAKYS 238
>gi|125546411|gb|EAY92550.1| hypothetical protein OsI_14290 [Oryza sativa Indica Group]
Length = 260
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 82/205 (40%), Gaps = 29/205 (14%)
Query: 66 GDTKVLAAVYGPKAGTKKNENPE------KASIEVIWKPRTGQIGKPEKEYEIILKRTLQ 119
G TKV+ +V+GP+ K + S P GQ G KEY +L + L+
Sbjct: 70 GKTKVIVSVFGPRESKKAMLYSDTGRLNCNVSYTTFATPMRGQ-GTDNKEYSAMLHKALE 128
Query: 120 SICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHL--AVAICCCSAE 177
+L P TT V V+ G+ LP I+ A AL DAGI M L +V++ C
Sbjct: 129 GAVMLHTFPKTTVDVFALVLESGGSDLPIIISCASLALADAGIMMYDLVTSVSVSCFGKN 188
Query: 178 SGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVD 237
I+DPT EE +GS +V P I G S
Sbjct: 189 ---IIIDPTSDEE-----------------AWQDGSLMVAYMPARKEITQLTLTGEWSDG 228
Query: 238 DYFHCLERGRAASAKLSDFLRRSLQ 262
+ +E A +KL D LR L+
Sbjct: 229 KITNAVELCMDACSKLCDILREHLK 253
>gi|213514504|ref|NP_001134304.1| Exosome complex exonuclease RRP41 [Salmo salar]
gi|209732228|gb|ACI66983.1| Exosome complex exonuclease RRP41 [Salmo salar]
Length = 245
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 75/183 (40%), Gaps = 44/183 (24%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +LR + + +A GSA ++
Sbjct: 13 RLDGRKAAELRKVQARMGVFAQADGSA------------------------------YIE 42
Query: 65 SGDTKVLAAVYGPKA--GTKKNENPEKASIEVIW---------KPRTGQIGKPEKEYEII 113
G+TK LA VYGP G++ ++A I + + R + E +
Sbjct: 43 QGNTKALAVVYGPHEVRGSRSKTLHDRAVINCQYSMATFSTAERKRRPHGDRKSTEMSLH 102
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
LK+T ++ + + P + + ++++ DG +NAA A+VDAGIPM+ +C
Sbjct: 103 LKQTFEAAVLTNLYPRSQIDIYVKILQSDGGNYSACVNAATLAVVDAGIPMRDY---VCA 159
Query: 174 CSA 176
C+A
Sbjct: 160 CTA 162
>gi|451856157|gb|EMD69448.1| hypothetical protein COCSADRAFT_32167 [Cochliobolus sativus ND90Pr]
Length = 252
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 76/179 (42%), Gaps = 43/179 (24%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR N+LR + S A GS+ ++
Sbjct: 14 RLDGRRWNELRHIHAQISTQAAADGSS------------------------------YLE 43
Query: 65 SGDTKVLAAVYGPKAGTKK-------NENPEKASIEVIWKPRTG------QIGKPEKEYE 111
G+TKVL +V GP A K+ ++ K +E+ + +G + K E E
Sbjct: 44 MGNTKVLVSVSGPAAEGKQTGQRGTTSDKLAKIDVEINFAGFSGVDRRKRKTDKKTSEME 103
Query: 112 IILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVA 170
L+ + + L + P +T ++ + +V DG+LL +NAA ALVDAGIPM VA
Sbjct: 104 HCLRSAFEGVVSLHLYPRSTITINVHIVSQDGSLLAACLNAATLALVDAGIPMTDYLVA 162
>gi|148228965|ref|NP_001088679.1| exosome component 4 [Xenopus laevis]
gi|56270437|gb|AAH87307.1| LOC495942 protein [Xenopus laevis]
Length = 249
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 76/183 (41%), Gaps = 44/183 (24%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +LR + + +A GSA ++
Sbjct: 13 RVDGRKAGELRKIRARMGVFAQADGSA------------------------------YIE 42
Query: 65 SGDTKVLAAVYGPKA--GTKKNENPEKASIEVIWKPRTGQIGKPEK---------EYEII 113
G+TK LA VYGP G++ ++ I + T G+ ++ E +
Sbjct: 43 QGNTKALAVVYGPHEIRGSRSKMLHDRCVINCQYSMATFSTGERKRRPHGDRKSSEMTLH 102
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
LK+T ++ + + P + + +Q++ DG +NAA A++DAGIPM+ +C
Sbjct: 103 LKQTFEAAILTQLYPRSQIDIYVQILQADGGNYCTCVNAATLAVIDAGIPMRDY---VCA 159
Query: 174 CSA 176
CSA
Sbjct: 160 CSA 162
>gi|45185722|ref|NP_983438.1| ACR035Wp [Ashbya gossypii ATCC 10895]
gi|44981477|gb|AAS51262.1| ACR035Wp [Ashbya gossypii ATCC 10895]
gi|374106644|gb|AEY95553.1| FACR035Wp [Ashbya gossypii FDAG1]
Length = 246
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 85/213 (39%), Gaps = 45/213 (21%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR N+LR CS + A +S+ +
Sbjct: 13 RLDGRRWNELRRFECSINTHPTAADGSSYLE----------------------------- 43
Query: 65 SGDTKVLAAVYGP-KAGTKKNENPEKASIEVIW---------KPRTGQIGKPEK---EYE 111
G+ K++ V GP + + NP KA++ V + +TG K E+ E +
Sbjct: 44 QGNNKLITLVTGPHEPALRSQVNPSKATLTVTVNMTKFAAAERSKTGH--KNERRILEMQ 101
Query: 112 IILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAI 171
L RT + +L + P T V + V+ +DG +L IN AL+DAGI M I
Sbjct: 102 TALVRTFEKNVMLQLYPRTAIDVQVHVLQNDGGVLGSMINGITLALIDAGIAMYEYISGI 161
Query: 172 CCCSAESGYCILDPTKLEEQKMKGFAYLVFPNS 204
++ +LD +LEEQ M F V S
Sbjct: 162 SVGLYDT-TPLLDLNRLEEQAMSCFTLGVVGKS 193
>gi|242005051|ref|XP_002423388.1| Exosome complex exonuclease RRP41, putative [Pediculus humanus
corporis]
gi|212506432|gb|EEB10650.1| Exosome complex exonuclease RRP41, putative [Pediculus humanus
corporis]
Length = 253
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 79/199 (39%), Gaps = 46/199 (23%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR ++LR + C + + GSA ++
Sbjct: 11 RLDGRRASELRQIRCKLGVFSQPDGSA------------------------------YIE 40
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASI-------------EVIWKPRTGQIGKPEKEYE 111
G+TKVLAAVYGP + + A++ E +PR K +E
Sbjct: 41 MGNTKVLAAVYGPHQVRGRTKPLLDAAVINCQYSSAVFSTEERKKRPRGD---KKSQEKS 97
Query: 112 IILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAI 171
+ L + L + + P + + ++V+ DG A+N + AL+DAGIP+K +
Sbjct: 98 MHLCQALSAAIKTELYPKSQIDIFVEVLQSDGGSFSAAVNVSTLALIDAGIPLKEYVTSC 157
Query: 172 CCCSAESGYCILDPTKLEE 190
A ++D T LEE
Sbjct: 158 TASLANENIPLVDVTYLEE 176
>gi|48477466|ref|YP_023172.1| exosome complex exonuclease Rrp41 [Picrophilus torridus DSM 9790]
gi|48430114|gb|AAT42979.1| ribonuclease PH [Picrophilus torridus DSM 9790]
Length = 239
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 83/202 (41%), Gaps = 53/202 (26%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR N++RP+ + ++ A GSA + W
Sbjct: 13 RLDGRAFNEMRPIRITTGVVDNADGSA---------------------------YIEW-- 43
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKA-----------SIEVIWKP----RTGQIGKPEKE 109
G K++ AVY +A K +N +KA S+E +P RT +I K
Sbjct: 44 -GANKIVVAVYVREAYPKHAQNIDKAIVKARYNMAGFSVEERKRPGPDRRTMEISK---- 98
Query: 110 YEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAV 169
++ L+S ++ P V I+V+ D ++ AA A+ DAGIPMK L V
Sbjct: 99 ---LISEALESAIMVERLPRAEIDVYIEVLEADAGTRIASLTAASVAVADAGIPMKDLPV 155
Query: 170 AICCCSAESGYCILDPTKLEEQ 191
C +G +LD +K E+
Sbjct: 156 G-CTAGKANGKVVLDLSKDEDN 176
>gi|448529118|ref|XP_003869792.1| hypothetical protein CORT_0E00700 [Candida orthopsilosis Co 90-125]
gi|380354146|emb|CCG23659.1| hypothetical protein CORT_0E00700 [Candida orthopsilosis]
Length = 244
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 82/196 (41%), Gaps = 40/196 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR N+LR C R + S S G +++
Sbjct: 13 RIDGRRWNELRRFEC------RINTHPSSSDGSSYVE----------------------- 43
Query: 65 SGDTKVLAAVYGP-KAGTKKNENPEKASIEV---------IWKPRTGQIGKPEKEYEIIL 114
G+TKV+ V GP + ++ N +KA++EV + + + K E L
Sbjct: 44 QGNTKVICTVQGPIEPSSRAQMNQDKANLEVNLTIANFSTFERKKRSKSEKRMVELRTTL 103
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
+RT + +L + P T ++ +QV+ DG +L N+ A++DAGI M ++ C
Sbjct: 104 ERTFEQSILLHLYPRTNITINVQVLSQDGGMLAAITNSITLAIIDAGIAMYDYVSSVSCG 163
Query: 175 SAESGYCILDPTKLEE 190
+ +LD LEE
Sbjct: 164 LFDQS-PLLDLNNLEE 178
>gi|357472161|ref|XP_003606365.1| Exosome complex exonuclease MTR3 [Medicago truncatula]
gi|355507420|gb|AES88562.1| Exosome complex exonuclease MTR3 [Medicago truncatula]
Length = 258
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 78/199 (39%), Gaps = 42/199 (21%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +Q RP ++ A GSA + F
Sbjct: 33 RPDGRGFHQCRPAFFRTGAVNAASGSA-------------YAEF---------------- 63
Query: 65 SGDTKVLAAVYGPKAGTKKNENPE------KASIEVIWKPRTGQIGKPEKEYEIILKRTL 118
G+TKV+ +V+GP+ K + S P GQ G KEY +L + L
Sbjct: 64 -GNTKVIVSVFGPRESKKAMMYSDTGRLNCNVSYTTFSTPVRGQ-GSDHKEYSSMLHKAL 121
Query: 119 QSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHL--AVAICCCSA 176
+ IL P TT V V+ G+ LP I+ A AL DAGI M L +V++ C
Sbjct: 122 EGAIILDSFPKTTVDVFALVLESSGSDLPVVISVASLALADAGILMYDLVASVSVSCLGK 181
Query: 177 ESGYCILDPTKLEEQKMKG 195
++DP EE G
Sbjct: 182 N---LVIDPIFEEENSQDG 197
>gi|402590947|gb|EJW84877.1| hypothetical protein WUBG_04212 [Wuchereria bancrofti]
Length = 250
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 80/200 (40%), Gaps = 48/200 (24%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P+Q+R L + +A GSA QG
Sbjct: 10 RQDGRKPHQIRNLNYKLGVYSQADGSAYLEQG---------------------------- 41
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASI-------------EVIWKPRTGQIGKPEKEYE 111
+TKVL AVYGP +++ E I E +PR + E+
Sbjct: 42 --NTKVLCAVYGPYEPKQRSRLLEDRCIINCQYSMATFSTNERKERPRGD---RRSLEFA 96
Query: 112 IILKRTLQSICILTIN-PNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVA 170
++++ ++ ILT N P + V +++ DG+ L +N AL DAG+PM+ L A
Sbjct: 97 RLMEKAFEA-AILTENYPRSQIDVFCELLQADGSHLAACVNVGTLALADAGVPMRGLVAA 155
Query: 171 ICCCSAESGYCILDPTKLEE 190
C A G +D EE
Sbjct: 156 ASCACAPGGLACVDVNSREE 175
>gi|238881631|gb|EEQ45269.1| exosome complex exonuclease RRP41 [Candida albicans WO-1]
Length = 240
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 104/255 (40%), Gaps = 63/255 (24%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR N+LR C R + + S G +++
Sbjct: 10 RIDGRRWNELRRFEC------RINTHPNSSDGSSYVE----------------------- 40
Query: 65 SGDTKVLAAVYGP-KAGTKKNENPEKASIEV---------IWKPRTGQIGKPEKEYEIIL 114
G+TKV+ V GP + + ++ E+A+IEV + + + + E + L
Sbjct: 41 QGNTKVMCTVQGPIEPALRSQQHSERANIEVNLNIASFSTFERKKRSRNERRLVELKTTL 100
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
++T + ++ + P T + +QV+ DG +L IN+ AL+DAGI M + V+ C
Sbjct: 101 EKTFEESVMINLYPRTNIVINVQVLCQDGGMLAAVINSITLALIDAGISM-YDYVSGVSC 159
Query: 175 SAESGYCILDPTKLEEQKM-----------KGFAYLVFPN--------SILSVLPEGS-- 213
+LD LEE M + A ++ + S+LS+ GS
Sbjct: 160 GVYDQTPLLDVNNLEEHDMSCLTVGVIGKSEKLALMLLEDKMPLDRLESVLSIGIAGSHK 219
Query: 214 --SLVQGEPMEHGII 226
L+ E +HGII
Sbjct: 220 IRELMDQEVRKHGII 234
>gi|348501208|ref|XP_003438162.1| PREDICTED: exosome complex component RRP41-like [Oreochromis
niloticus]
Length = 245
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 73/182 (40%), Gaps = 44/182 (24%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +LR L + +A GSA QG
Sbjct: 13 RLDGRKATELRKLQARMGVFTQADGSAYLEQG---------------------------- 44
Query: 65 SGDTKVLAAVYGPKA--GTKKNENPEKASIEVIW---------KPRTGQIGKPEKEYEII 113
+TK LA VYGP G++ ++A I + + R + E +
Sbjct: 45 --NTKALAVVYGPHEMRGSRSRTLHDRAVINCQYSMATFSTAERKRRPHGDRKSTEMSLH 102
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
LK+T ++ + + P + + ++++ DG +NAA A++DAGIPM+ +C
Sbjct: 103 LKQTFEAAVMTQLYPRSQIDIYVKILQSDGGNYSVCVNAATLAVIDAGIPMRDY---VCA 159
Query: 174 CS 175
C+
Sbjct: 160 CT 161
>gi|448099279|ref|XP_004199107.1| Piso0_002516 [Millerozyma farinosa CBS 7064]
gi|359380529|emb|CCE82770.1| Piso0_002516 [Millerozyma farinosa CBS 7064]
Length = 244
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 66/153 (43%), Gaps = 11/153 (7%)
Query: 62 WVGSGDTKVLAAVYGPKAGTKKNE----------NPEKASIEVIWKPRTGQIGKPEKEYE 111
+V G+TKV+ V GPK + K++ N AS + + + K E
Sbjct: 41 YVEQGNTKVICMVSGPKEPSNKSQQNSSGAVIEFNVSIASFSTTNRKKRSKNEKRTIELN 100
Query: 112 IILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAI 171
L+RT + I + P TT SV + V+ DG LL NA+ AL+DAGI M I
Sbjct: 101 TTLERTFEQSIIRKLYPRTTISVNLHVLAQDGGLLAALTNASTLALIDAGISMYDYISGI 160
Query: 172 CCCSAESGYCILDPTKLEEQKMKGFAYLVFPNS 204
+ +LD LEE M V NS
Sbjct: 161 SAGLHDIS-PLLDLNTLEESGMSFLTIGVVGNS 192
>gi|297803290|ref|XP_002869529.1| hypothetical protein ARALYDRAFT_491986 [Arabidopsis lyrata subsp.
lyrata]
gi|297315365|gb|EFH45788.1| hypothetical protein ARALYDRAFT_491986 [Arabidopsis lyrata subsp.
lyrata]
Length = 125
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/39 (71%), Positives = 33/39 (84%)
Query: 105 KPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 143
K E+EYE ILK+TLQ+IC+LT+ NT TSVIIQVVHD G
Sbjct: 54 KVEREYETILKKTLQNICVLTVVTNTATSVIIQVVHDGG 92
>gi|145344813|ref|XP_001416919.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577145|gb|ABO95212.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 260
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 64/272 (23%), Positives = 104/272 (38%), Gaps = 47/272 (17%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR+ LR + AHGSA ++
Sbjct: 8 RGDGRSSEMLRRQRLHRHYVAGAHGSAEYA------------------------------ 37
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICIL 124
T V+A V+GP+ E E+ +E +G + E+ E ++ +++ +
Sbjct: 38 IDGTIVVATVHGPQKVKPWREEVERGIVEFELTSASGMTREEERACEARVRGAIEATVVR 97
Query: 125 TINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILD 184
P ++V DDG +NA C AL+DA + M L A C G ++D
Sbjct: 98 YDFPRLGLRATARIVSDDGNAEAACVNALCCALIDADVAMHGLICANACAILSDGTKVID 157
Query: 185 PTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLE 244
PTK EE + A V LS E + I+ T GA++ ++Y +
Sbjct: 158 PTKREENE----ARAVVRACALSKYREKEEI--------AIVGCSTTGALTEEEYLESIA 205
Query: 245 RGRAASAKLSDFLRRS-----LQSKLPGDLSK 271
A+A + +F ++S L+ K D +K
Sbjct: 206 FIVDATASVVNFQKKSIARFELEGKFQEDGTK 237
>gi|41469640|gb|AAS07363.1| putative exoribonuclease [Oryza sativa Japonica Group]
gi|108712055|gb|ABF99850.1| 3' exoribonuclease family, domain 1 containing protein, expressed
[Oryza sativa Japonica Group]
gi|125588609|gb|EAZ29273.1| hypothetical protein OsJ_13338 [Oryza sativa Japonica Group]
gi|215768717|dbj|BAH00946.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 260
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 82/205 (40%), Gaps = 29/205 (14%)
Query: 66 GDTKVLAAVYGPKAGTKKNENPE------KASIEVIWKPRTGQIGKPEKEYEIILKRTLQ 119
G TKV+ +V+GP+ K + S P GQ G KEY +L + L+
Sbjct: 70 GKTKVIVSVFGPRESKKAMLYSDTGRLNCNVSYTTFATPIRGQ-GTDNKEYSAMLHKALE 128
Query: 120 SICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHL--AVAICCCSAE 177
+L P TT V V+ G+ LP I+ A AL DAGI M L +V++ C
Sbjct: 129 GAVMLHTFPKTTVDVFALVLESGGSDLPIIISCASLALADAGIMMYDLVTSVSVSCFGKN 188
Query: 178 SGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVD 237
I+DPT EE +GS +V P I G S
Sbjct: 189 ---IIIDPTSDEE-----------------AWQDGSLMVAYMPARKEITQLTLTGEWSDG 228
Query: 238 DYFHCLERGRAASAKLSDFLRRSLQ 262
+ +E A +KL D LR L+
Sbjct: 229 KITNAVELCMDACSKLCDILRERLK 253
>gi|308509680|ref|XP_003117023.1| CRE-CRN-5 protein [Caenorhabditis remanei]
gi|308241937|gb|EFO85889.1| CRE-CRN-5 protein [Caenorhabditis remanei]
Length = 214
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 82/186 (44%), Gaps = 39/186 (20%)
Query: 13 QLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLA 72
+LR + C S L A GSA +SQG S C + G GD
Sbjct: 4 RLREMRCELSFLKNADGSACFSQG------------------STCIWASCSGPGD----- 40
Query: 73 AVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEI---ILKRTLQSICILTINPN 129
V+ KA N E ++++ ++ G + ++ + I++ T+ L + P+
Sbjct: 41 -VHASKA------NEEAMTLDISYRANCG-----DNKFSVLNNIIQSTISKAINLELFPH 88
Query: 130 TTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLE 189
TT +V I + DDG++ AIN AC AL+D G+P + + + + I+DPT +
Sbjct: 89 TTIAVTIHGIQDDGSIGAVAINGACFALLDNGMPFEAVFCGVLVVRVKDEL-IIDPTAKQ 147
Query: 190 EQKMKG 195
E G
Sbjct: 148 EASSTG 153
>gi|268552543|ref|XP_002634254.1| C. briggsae CBR-EXOS-4.1 protein [Caenorhabditis briggsae]
gi|206557764|sp|A8WQQ5.1|EXOS4_CAEBR RecName: Full=Putative exosome complex component RRP41
Length = 240
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 82/198 (41%), Gaps = 40/198 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P Q+R + + A GS CY +
Sbjct: 10 RMDGRRPAQIRNINTRLGLNRNAEGS--------------------------CYLEH--- 40
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRT----GQIGKPE---KEYEI--ILK 115
G+TKVL AVYGP ++ +I + T + +P K EI +L+
Sbjct: 41 -GNTKVLCAVYGPYESKASKRLEDRCAIVCQYSTTTFSGLERKNRPRGDRKSTEISRLLE 99
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
+ +S+ + P + + +V+ DG+ L +NA AL DAGIPMK +A A C
Sbjct: 100 KAFESVILTESFPRSQIDIFCEVIQGDGSNLAACVNATSLALADAGIPMKGIASAATCGI 159
Query: 176 AESGYCILDPTKLEEQKM 193
E+ I+D T EE +
Sbjct: 160 VETKP-IVDLTSREETDL 176
>gi|241954284|ref|XP_002419863.1| 3'-to-5' phosphorolytic exoribonuclease, putative; exosome complex
exonuclease, putative; ribosomal RNA processing protein,
putative [Candida dubliniensis CD36]
gi|223643204|emb|CAX42078.1| 3'-to-5' phosphorolytic exoribonuclease, putative [Candida
dubliniensis CD36]
Length = 240
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 103/255 (40%), Gaps = 63/255 (24%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR N+LR C R + + S G +++
Sbjct: 10 RIDGRRWNELRRFEC------RINTHPNSSDGSSYVE----------------------- 40
Query: 65 SGDTKVLAAVYGPKAGT-KKNENPEKASIEV---------IWKPRTGQIGKPEKEYEIIL 114
G+TKV+ V GP T + ++ E+A+IEV + + + + E + L
Sbjct: 41 QGNTKVMCTVQGPIEPTLRSQQHSERANIEVNLNIASFSTFERKKRSRNERRLVELKTTL 100
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
++T + ++ + P T + +QV+ DG +L IN+ AL+DAGI M + C
Sbjct: 101 EKTFEESVMINLYPRTNIVINVQVLCQDGGMLATIINSITLALIDAGISMYDYVSGVSCG 160
Query: 175 SAESGYCILDPTKLEEQKM-----------KGFAYLVFPN--------SILSVLPEGS-- 213
+ +LD LEE M + A L+ + S+LS+ GS
Sbjct: 161 LYDQ-TPLLDVNNLEEHDMSCLTIGVIGKSEKLALLLLEDKMPLDRLESVLSIGIAGSHK 219
Query: 214 --SLVQGEPMEHGII 226
L+ E +HGII
Sbjct: 220 IRELMDQEVRKHGII 234
>gi|393221006|gb|EJD06491.1| exosome component 4 [Fomitiporia mediterranea MF3/22]
Length = 284
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 86/212 (40%), Gaps = 45/212 (21%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R+DGR ++LR ++ +A GSA SQG
Sbjct: 34 RSDGRRQHELRDFNIDLAVRGQADGSAMVSQGL--------------------------- 66
Query: 65 SGDTKVLAAVYGPKAG---TKKNENPEKASIEV-IWKPRTGQIGKPEK------EYEIIL 114
T+VL V+GP+ T++ N ++EV I T + K + E+ +
Sbjct: 67 ---TQVLVTVFGPREARSPTQRIHNRAFINVEVNIASFSTSERRKRSRNDKRVLEFAAAI 123
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
K T + + + P + + +QV+ DG LL +INA AL+ GI + +C
Sbjct: 124 KSTFEPVIQTHLYPRSEIDIFVQVLQQDGGLLSASINATTLALITGGISLYDY---VCAV 180
Query: 175 SA--ESGYCILDPTKLEEQKMKGFAYLVFPNS 204
SA + + +LD LEE + V P +
Sbjct: 181 SAGVHATHPLLDLNTLEENDVPHLTTAVMPRT 212
>gi|354547529|emb|CCE44264.1| hypothetical protein CPAR2_400650 [Candida parapsilosis]
Length = 241
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 81/196 (41%), Gaps = 40/196 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR N+LR C R + + S G +++
Sbjct: 10 RIDGRRWNELRRFEC------RVNTHPNSSDGSSYVE----------------------- 40
Query: 65 SGDTKVLAAVYGPKAGTKKNE-NPEKASIEV---------IWKPRTGQIGKPEKEYEIIL 114
G+TKV+ V GP + + N +KA++EV + + + K E L
Sbjct: 41 QGNTKVICTVQGPTEPISRAQMNQDKANLEVNLTIANFSTFERKKRSKSEKRMVELRTTL 100
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
+RT + +L + P T ++ +QV+ DG +L NA A++DAGI M ++ C
Sbjct: 101 ERTFEQSVLLHLYPRTNITINVQVLSQDGGMLAAITNAITLAIIDAGIAMYDYVSSVSCG 160
Query: 175 SAESGYCILDPTKLEE 190
+ +LD LEE
Sbjct: 161 LIDQS-PLLDLNNLEE 175
>gi|340727523|ref|XP_003402091.1| PREDICTED: exosome complex component MTR3-like [Bombus terrestris]
Length = 273
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 100/232 (43%), Gaps = 57/232 (24%)
Query: 4 DRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWV 63
+R+D R N++R + I+ +A GSA ++
Sbjct: 36 ERSDKRTNNEMRKIFLKAGIVSQAKGSA------------------------------YI 65
Query: 64 GSGDTKVLAAVYGPKAGTKKNENPEKASI--EVIWKP------RTGQIGKPEKEYEIILK 115
G+TKV+ +V+ P+ + KN + I E + P + Q EK+Y +IL+
Sbjct: 66 ELGNTKVVCSVFDPREVSNKNSYYAQGEIYCEFKFAPFSCQKRKVHQQNAEEKQYSLILQ 125
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
R L+ L PN V + V+ + G+ L AI AA AL +AG+PM L A
Sbjct: 126 RALEPAVCLHEFPNFQVDVYVMVLDNAGSSLAAAIMAASTALANAGVPMFGLVTASTIGI 185
Query: 176 AESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIIT 227
++ Y ++DPT +EE +I + P+ QG+ HGIIT
Sbjct: 186 YDNHY-LMDPTDIEE-------------AICNTQPDN----QGD-FNHGIIT 218
>gi|18313178|ref|NP_559845.1| exosome complex exonuclease Rrp41 [Pyrobaculum aerophilum str. IM2]
gi|29336868|sp|Q8ZVM9.1|ECX1_PYRAE RecName: Full=Probable exosome complex exonuclease 1
gi|18160692|gb|AAL64027.1| 3' exoribonuclease family protein [Pyrobaculum aerophilum str. IM2]
Length = 246
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 87/201 (43%), Gaps = 41/201 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
RADGR P+Q+R + + ++ A GSA V
Sbjct: 14 RADGRTPDQMREVKIAVGVVSNADGSA------------------------------MVS 43
Query: 65 SGDTKVLAAVYGPKAGTKKNEN-PEKASIEVIW---------KPRTGQIGKPEKEYEIIL 114
G T +AAVYGP+ ++ + P++ + V + + ++ + E E IL
Sbjct: 44 YGATTAVAAVYGPREMHPRHLSLPDRGVMRVRYHMAPFSTKDERKSPTPSRREIEISKIL 103
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
+ L+ +L P + V ++++ DG+ ++ AA AL DAGI M+ L V +
Sbjct: 104 REALEPAIVLEQYPRSRIDVFVEILQADGSTRVASLTAASLALADAGIYMRDLVVGVSVG 163
Query: 175 SAESGYCILDPTKLEEQKMKG 195
+ G +LD LE+Q +G
Sbjct: 164 LVD-GTVVLDLNGLEDQYGEG 183
>gi|328773049|gb|EGF83086.1| hypothetical protein BATDEDRAFT_84610 [Batrachochytrium
dendrobatidis JAM81]
Length = 253
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 102/224 (45%), Gaps = 46/224 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
RAD R P+Q+RP+ + +A+GSA ++
Sbjct: 31 RADKRRPDQIRPIYTKAGTIPQANGSA------------------------------YIE 60
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWK--PRTGQIGK------PEKEYEIILKR 116
+G+ KV+ AVYGP+ + + + +++ +K P +G+ K EKE+ ++L++
Sbjct: 61 TGNLKVICAVYGPRQSSSRQLSSSTGTLQCDFKFAPFSGEKRKGYAKDDQEKEFSMVLEQ 120
Query: 117 TLQSICILTINPNTTTSVIIQVVHDDGAL--LPCAINAACAALVDAGIPMKHLAVAICCC 174
L L P T V + V+ +DG++ L AI+ A AL +AGI M + A
Sbjct: 121 ALTPSIRLENYPKFTIQVFVIVLENDGSMSALAAAISCASLALANAGIEMLDMVAASSIA 180
Query: 175 S-AESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQ 217
ES C+ L+E+ ++ A LV S + L E + L+Q
Sbjct: 181 YFGESMLCL--DVSLKEEMVQDGAMLV---SYMPSLNEVTHLIQ 219
>gi|170586916|ref|XP_001898225.1| Putative exosome complex exonuclease RRP41 [Brugia malayi]
gi|158594620|gb|EDP33204.1| Putative exosome complex exonuclease RRP41, putative [Brugia
malayi]
Length = 249
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 79/200 (39%), Gaps = 48/200 (24%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P+Q+R L + +A GSA QG
Sbjct: 10 RQDGRKPHQIRNLNYKLGVYSQADGSAYLEQG---------------------------- 41
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASI-------------EVIWKPRTGQIGKPEKEYE 111
+TKVL AVYGP +++ E I E +PR + E+
Sbjct: 42 --NTKVLCAVYGPYEPKQRSRLLEDRCIINCQYSMATFSTNERKERPRGD---RRSLEFA 96
Query: 112 IILKRTLQSICILTIN-PNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVA 170
++++ + ILT N P + V +++ DG+ L +N AL DAG+PM+ L A
Sbjct: 97 RLMEKAFEE-AILTENYPRSQIDVFCELLQADGSHLAACVNVGTLALADAGVPMRGLVAA 155
Query: 171 ICCCSAESGYCILDPTKLEE 190
C A G +D EE
Sbjct: 156 ASCACAPGGLACVDVNSREE 175
>gi|68466049|ref|XP_722799.1| likely exosome component Ski6p [Candida albicans SC5314]
gi|68466344|ref|XP_722654.1| likely exosome component Ski6p [Candida albicans SC5314]
gi|46444644|gb|EAL03917.1| likely exosome component Ski6p [Candida albicans SC5314]
gi|46444799|gb|EAL04071.1| likely exosome component Ski6p [Candida albicans SC5314]
Length = 240
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 103/255 (40%), Gaps = 63/255 (24%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR N+LR C R + + S G +++
Sbjct: 10 RIDGRRWNELRRFEC------RINTHPNSSDGSSYVE----------------------- 40
Query: 65 SGDTKVLAAVYGP-KAGTKKNENPEKASIEV---------IWKPRTGQIGKPEKEYEIIL 114
G+TKV+ V GP + + ++ E+A+IEV + + + + E + L
Sbjct: 41 QGNTKVMCTVQGPIEPALRSQQHSERANIEVNLNIASFSTFERKKRSRNERRLVELKTTL 100
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
++T + ++ + P T + +QV+ DG +L IN+ AL+DAGI M + C
Sbjct: 101 EKTFEESVMINLYPRTNIVINVQVLCQDGGMLAAVINSITLALIDAGISMYDYVSGVSCG 160
Query: 175 SAESGYCILDPTKLEEQKM-----------KGFAYLVFPN--------SILSVLPEGS-- 213
+ +LD LEE M + A ++ + S+LS+ GS
Sbjct: 161 LYDQ-TPLLDVNNLEEHDMSCLTVGVIGKSEKLALMLLEDKMPLDRLESVLSIGIAGSHK 219
Query: 214 --SLVQGEPMEHGII 226
L+ E +HGII
Sbjct: 220 IRELMDQEVRKHGII 234
>gi|443895550|dbj|GAC72896.1| inositol polyphosphate multikinase, component of the ARGR
transcription regulatory complex [Pseudozyma antarctica
T-34]
Length = 266
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 69/153 (45%), Gaps = 19/153 (12%)
Query: 66 GDTKVLAAVYGPK-AGTKKNENPEKAS--IEVIWKPRTGQIGKPEK-----------EYE 111
G T V A V+GP+ A + N ++AS +EV P G E+ E+
Sbjct: 46 GLTTVSATVFGPREARSGGNMLHDRASLNVEVALAP----WGSMERRRRNRGDRRLVEFA 101
Query: 112 IILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAI 171
+K T + + + P + + + V DG +LP AINAA AL+DAGI M H VA
Sbjct: 102 SAIKSTFEPVVHTHLYPRSQIDIFVHVHQQDGGVLPAAINAATLALLDAGIAM-HDFVAA 160
Query: 172 CCCSAESGYCILDPTKLEEQKMKGFAYLVFPNS 204
C S +LD + EE + V P +
Sbjct: 161 VSCGIHSTAALLDLSNAEESDLPNLTVAVLPRT 193
>gi|19114994|ref|NP_594082.1| exosomal 3'-to-5' phosphorolytic exoribonuclease Rrp41 (predicted)
[Schizosaccharomyces pombe 972h-]
gi|21759394|sp|O42872.1|RRP41_SCHPO RecName: Full=Exosome complex component ski6; AltName:
Full=Ribosomal RNA-processing protein 41
gi|2706461|emb|CAA15919.1| exosomal 3'-to-5' phosphorolytic exoribonuclease Rrp41 (predicted)
[Schizosaccharomyces pombe]
Length = 242
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 87/212 (41%), Gaps = 47/212 (22%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +++R C I +GSA FI+
Sbjct: 13 RNDGRRWDEMRNFQCRIGIEPSENGSA-------FIEL---------------------- 43
Query: 65 SGDTKVLAAVYGPKA---GTKKNENPEKASIEV-IWKPRTGQIGKPEKEYEII------L 114
G+TKVL V GP +K + ++E+ I T + K K I L
Sbjct: 44 -GNTKVLCIVDGPSEPVIKSKARADRTFVNVEINIASFSTIDVKKRFKSDRRIQLQCLAL 102
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
+ T + I + P + SV + V+ DDGA++ INA AL+DAGIP+K +CC
Sbjct: 103 QNTFEEIIQTELYPRSQISVYLHVLQDDGAVMASCINATTLALIDAGIPVKDF---VCCS 159
Query: 175 SA---ESGYCILDPTKLEEQKMKGFAYLVFPN 203
+A ES +LD LEE + V N
Sbjct: 160 TAGIVESDM-LLDLNSLEESALSWLTVAVLGN 190
>gi|52549528|gb|AAU83377.1| ribonuclease PH [uncultured archaeon GZfos27G5]
Length = 247
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 93/227 (40%), Gaps = 51/227 (22%)
Query: 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCY 61
E R+DGR ++LRP+ +L RA GS CY
Sbjct: 10 EGKRSDGRGFDELRPIKIEVGVLKRADGS--------------------------CYLEL 43
Query: 62 WVGSGDTKVLAAVYGPKAGTKKN-ENPEKASIEVIW---------KPRTGQIGKPEK--- 108
G+ KV+AAVYGP+ ++ ++ + A I+ + + R G P++
Sbjct: 44 ----GNNKVIAAVYGPREMHPRHAQDAKMAVIKFRYNMAPFSTDDRKRPG----PDRRSV 95
Query: 109 EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLA 168
E + + + + + P V ++++ D INAA AL DAGIPMK L
Sbjct: 96 EISKVCREAFDPVIMRELYPKMGIEVYVELLQSDAGTRTAGINAASIALADAGIPMKDLV 155
Query: 169 VAICCCSAESGYCILDPTKLEEQKMKG---FAYLVFPNSILSVLPEG 212
+I +G +LD E+ + A + N+I ++ +G
Sbjct: 156 SSIAVGKI-NGEVVLDLNAAEDNNGEADMPIAMIARTNTITALQMDG 201
>gi|340377098|ref|XP_003387067.1| PREDICTED: exosome complex component RRP41-like [Amphimedon
queenslandica]
Length = 243
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 93/225 (41%), Gaps = 58/225 (25%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R+DGR P +LR L+C+ S +A GSA QG
Sbjct: 19 RSDGRRPQELRVLSCNISHCLQADGSAYLQQG---------------------------- 50
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEK---------EYEIILK 115
+T+V+A VYGP + +KA I + T + +K E + LK
Sbjct: 51 --NTRVIATVYGPH-----DAQHDKAFINCQFSMATFSTSERKKRPTGDKSCLETSLALK 103
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCA--INAACAALVDAGIPMKHLAVAICC 173
+T ++ + P++ + +Q++ DG+ A INA AL+DAGIPMK +C
Sbjct: 104 KTFEAAILTDTYPHSKIDIFVQILQSDGSNCDKAVSINAITMALIDAGIPMKDY---VCA 160
Query: 174 CSAE--SGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLV 216
S + I+D EE+ P I+ LP+ +V
Sbjct: 161 TSVTLINDTPIVDLNYFEERGPG-------PELIVGTLPKSGKIV 198
>gi|330917879|ref|XP_003297997.1| hypothetical protein PTT_08574 [Pyrenophora teres f. teres 0-1]
gi|311329045|gb|EFQ93909.1| hypothetical protein PTT_08574 [Pyrenophora teres f. teres 0-1]
Length = 250
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 75/177 (42%), Gaps = 41/177 (23%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR N+LR + S A GS+ QG
Sbjct: 14 RLDGRRWNELRRIHAQISTQAAADGSSYLEQG---------------------------- 45
Query: 65 SGDTKVLAAVYGPKAGTKKNEN---PEKASIEVIW--------KPRTGQIGKPEKEYEII 113
+TK+L +V GP G + + ++A +EV + R + K E E
Sbjct: 46 --NTKILVSVTGPHEGRQSGQRGGADKQAKVEVEINFAGFSGVERRKRKSDKRTSEMEHC 103
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVA 170
++ + + +L + P++ ++ I +V DG+LL INA+ AL+DAGIPM VA
Sbjct: 104 IRSAFEGVLLLHLYPHSIITLNIHIVSQDGSLLAACINASTLALIDAGIPMTDYLVA 160
>gi|37362654|ref|NP_011609.2| Rrp46p [Saccharomyces cerevisiae S288c]
gi|118595829|sp|P53256.2|RRP46_YEAST RecName: Full=Exosome complex component RRP46; AltName:
Full=Ribosomal RNA-processing protein 46
gi|151943372|gb|EDN61685.1| 3'-5'-exoribonuclease [Saccharomyces cerevisiae YJM789]
gi|190406885|gb|EDV10152.1| 3'->5' exoribonuclease [Saccharomyces cerevisiae RM11-1a]
gi|207345132|gb|EDZ72051.1| YGR095Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256269404|gb|EEU04701.1| Rrp46p [Saccharomyces cerevisiae JAY291]
gi|259146598|emb|CAY79855.1| Rrp46p [Saccharomyces cerevisiae EC1118]
gi|285812288|tpg|DAA08188.1| TPA: Rrp46p [Saccharomyces cerevisiae S288c]
gi|323348611|gb|EGA82855.1| Rrp46p [Saccharomyces cerevisiae Lalvin QA23]
gi|323355041|gb|EGA86872.1| Rrp46p [Saccharomyces cerevisiae VL3]
gi|349578307|dbj|GAA23473.1| K7_Rrp46p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365765690|gb|EHN07197.1| Rrp46p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392299350|gb|EIW10444.1| Rrp46p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 223
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 89/209 (42%), Gaps = 20/209 (9%)
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICIL 124
S DTKV+ +V GP + E P + ++E+I +P G EK E L+ L +
Sbjct: 21 SQDTKVICSVTGPIEPKARQELPTQLALEIIVRPAKGVATTREKVLEDKLRAVLTPLITR 80
Query: 125 TINPNTTTSVIIQVV---HDDGAL----LPCAINAACAALVDAGIPMKHLAVAI-CCCSA 176
P + Q++ D+ L C INAA ALVDAGI + + +I
Sbjct: 81 HCYPRQLCQITCQILESGEDEAEFSLRELSCCINAAFLALVDAGIALNSMCASIPIAIIK 140
Query: 177 ESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSV 236
++ I+DPT E+ K+ LSV V G + ++ ++G +
Sbjct: 141 DTSDIIVDPTA-EQLKIS-----------LSVHTLALEFVNGGKVVKNVLLLDSNGDFNE 188
Query: 237 DDYFHCLERGRAASAKLSDFLRRSLQSKL 265
D F LE G +L +RR +Q +
Sbjct: 189 DQLFSLLELGEQKCQELVTNIRRIIQDNI 217
>gi|195388798|ref|XP_002053065.1| GJ23674 [Drosophila virilis]
gi|194151151|gb|EDW66585.1| GJ23674 [Drosophila virilis]
Length = 240
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 101/216 (46%), Gaps = 27/216 (12%)
Query: 51 FVFTSKCYFCYWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEY 110
F S+C G T V+AAV GP +N + E + +E ++P+ G E+
Sbjct: 21 FNALSRCDGSVMYSQGATVVIAAVLGPIEVKTQNLSIEGSYLECNYRPKAGLPQVKERIR 80
Query: 111 EIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVA 170
E ++ L+ + P SV +Q + D G++ CA+NAAC A++ G+P+K+ A
Sbjct: 81 EAAIRDVLELALLSEAYPRAKMSVQVQELEDRGSIDACALNAACLAMLIGGLPLKYSFAA 140
Query: 171 ICCCSAESGYCILDPTK---LEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIIT 227
+ C E G +LDP + L +Q FA+ ++L LVQ
Sbjct: 141 VHCIINEQGEFVLDPDQNETLHQQASFTFAFDSVDGNLL--------LVQ---------- 182
Query: 228 SVTHGAMSVDDY--FHCLERGRAASAKLSDFLRRSL 261
T GA + + C+ RAASA++ +F RR++
Sbjct: 183 --TKGAFKIAQFNDIECI--CRAASAEIFEFYRRNI 214
>gi|432917028|ref|XP_004079428.1| PREDICTED: exosome complex component RRP41-like [Oryzias latipes]
Length = 244
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 96/236 (40%), Gaps = 59/236 (25%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +LR + + +A GSA QG
Sbjct: 13 RLDGRKATELRKVQARMGVFAQADGSAYLEQG---------------------------- 44
Query: 65 SGDTKVLAAVYGPKA--GTKKNENPEKASIEVIW---------KPRTGQIGKPEKEYEII 113
+TK LA VYGP G + ++A I + + R + E +
Sbjct: 45 --NTKALAVVYGPHEIRGARSRALHDRAIINCQYSMATFSTAERKRRPHGDRKSTEMSLH 102
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
LK+T ++ + + P + + ++++ DG +NAA A++DAGIPM+ +C
Sbjct: 103 LKQTFEAAVLTQLYPRSQIDIYVKILQSDGGNYSVCVNAATLAVIDAGIPMRDY---VCA 159
Query: 174 CSAESGYCILDPTKLEE----QKMKGFAYLVFPNSILSVLPEGS--SLVQGEPMEH 223
C+ G+ +D T L + ++ G + L L++LP G +LVQ + H
Sbjct: 160 CTV--GF--VDETSLADLCYAEESGGVSSLA-----LALLPRGGQIALVQMDARLH 206
>gi|448103137|ref|XP_004199958.1| Piso0_002516 [Millerozyma farinosa CBS 7064]
gi|359381380|emb|CCE81839.1| Piso0_002516 [Millerozyma farinosa CBS 7064]
Length = 244
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 68/153 (44%), Gaps = 11/153 (7%)
Query: 62 WVGSGDTKVLAAVYGPKA-GTKKNENPEKASIE----VIWKPRTGQIGKPEKEYEII--- 113
+V G+TKV+ V GPK K +N A +E + T + + + E II
Sbjct: 41 YVEQGNTKVICMVSGPKEPSNKSQQNSSGAVVEFNVSIASFSTTNRKKRSKNEKRIIELN 100
Query: 114 --LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAI 171
L+RT + I + P TT SV + V+ DG LL NA+ AL+DAGI M I
Sbjct: 101 TTLERTFEQSIIRKLYPRTTISVNLHVLAQDGGLLAALTNASTLALIDAGISMYDYISGI 160
Query: 172 CCCSAESGYCILDPTKLEEQKMKGFAYLVFPNS 204
+ +LD LEE M V NS
Sbjct: 161 SAGLHDVS-PLLDLNTLEENGMSFLTIGVVGNS 192
>gi|1323143|emb|CAA97098.1| unnamed protein product [Saccharomyces cerevisiae]
gi|323337705|gb|EGA78950.1| Rrp46p [Saccharomyces cerevisiae Vin13]
Length = 256
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 89/209 (42%), Gaps = 20/209 (9%)
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICIL 124
S DTKV+ +V GP + E P + ++E+I +P G EK E L+ L +
Sbjct: 54 SQDTKVICSVTGPIEPKARQELPTQLALEIIVRPAKGVATTREKVLEDKLRAVLTPLITR 113
Query: 125 TINPNTTTSVIIQVV---HDDGAL----LPCAINAACAALVDAGIPMKHLAVAI-CCCSA 176
P + Q++ D+ L C INAA ALVDAGI + + +I
Sbjct: 114 HCYPRQLCQITCQILESGEDEAEFSLRELSCCINAAFLALVDAGIALNSMCASIPIAIIK 173
Query: 177 ESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSV 236
++ I+DPT E+ K+ LSV V G + ++ ++G +
Sbjct: 174 DTSDIIVDPTA-EQLKIS-----------LSVHTLALEFVNGGKVVKNVLLLDSNGDFNE 221
Query: 237 DDYFHCLERGRAASAKLSDFLRRSLQSKL 265
D F LE G +L +RR +Q +
Sbjct: 222 DQLFSLLELGEQKCQELVTNIRRIIQDNI 250
>gi|332017939|gb|EGI58588.1| Exosome complex exonuclease RRP41 [Acromyrmex echinatior]
Length = 272
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 104/243 (42%), Gaps = 46/243 (18%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +LR + + +A GSA ++
Sbjct: 13 RIDGRRALELRQIRMRMGVFGQADGSA------------------------------YIE 42
Query: 65 SGDTKVLAAVYGPK-AGTKKNENPEKASIE-----VIWKPRTGQIGK------PEKEYEI 112
G+TKVLAAVYGP+ + + + N KA I ++ +G+ + +E
Sbjct: 43 HGNTKVLAAVYGPRQSRSSASRNSTKAIINCQYSMAVFSFTSGERKRRPRGDWKSQERSA 102
Query: 113 ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAIC 172
L+ +++I L + P + V ++V+ DG+ ++NAA AL+DAGIP+K+ A+ C
Sbjct: 103 QLRHAMEAIIHLELYPRSQIDVFVEVLQVDGSDYCASVNAATLALIDAGIPIKNYAIG-C 161
Query: 173 CCSAESGYCILDPTKLEEQKMKGFAYL--VFPNSILSVLPEGSSLVQGEPMEHGIITSVT 230
+ + + D K + Y+ P LSV+ + E +G+I V
Sbjct: 162 SVTLVNKPSVEDEDKTLATGVLDANYVEECSPGVTLSVVALAGTNNDIEVDGNGLIV-VA 220
Query: 231 HGA 233
HGA
Sbjct: 221 HGA 223
>gi|336383937|gb|EGO25086.1| exoribonuclease, exosome component 4 [Serpula lacrymans var.
lacrymans S7.9]
Length = 265
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 80/210 (38%), Gaps = 41/210 (19%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R+DGR +LR ++ S HGSA S R
Sbjct: 14 RSDGRRQYELRDISIDLS----NHGSADGSVTIR-------------------------- 43
Query: 65 SGDTKVLAAVYGP-KAGTKKNENPEKASIEVIWKPRTGQIGKPEK---------EYEIIL 114
G T VL +V+GP +A + ++A++ V G+ K E +
Sbjct: 44 QGLTHVLVSVFGPHEARVRSQTLHDRANLNVEVNVSAFSAGERRKRSRADKRLLELAATI 103
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
+ T + + + P + V +QV+ DG LL IN AL AGIP+ A+
Sbjct: 104 RSTFEPVIQTHLYPRSQIDVFVQVIQQDGGLLQTCINGTTLALAHAGIPLFDFVCAV-TG 162
Query: 175 SAESGYCILDPTKLEEQKMKGFAYLVFPNS 204
S +LD T LEE + F + P S
Sbjct: 163 GVHSSSPMLDLTTLEENDIPNFTVAIMPKS 192
>gi|156550959|ref|XP_001603897.1| PREDICTED: exosome complex component RRP41-like [Nasonia
vitripennis]
Length = 270
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 85/214 (39%), Gaps = 61/214 (28%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
RADGR P +LR + + +A GSA QG
Sbjct: 13 RADGRRPLELRRIRLRMGVFGQADGSAYLEQG---------------------------- 44
Query: 65 SGDTKVLAAVYGP-KAGTKKNENPEKASIEVI-----------------WKPRTGQIGKP 106
TK+LA VYGP + K N N KA ++ KPR +
Sbjct: 45 --KTKILATVYGPHQPRGKANANALKAVKGIVNCQYSTAVFSFGAGERKKKPRGD---RK 99
Query: 107 EKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKH 166
+E L+ +++I L + + + ++V+ DG+ A+NAA AL+DAGIP+K
Sbjct: 100 SQERSQQLRHAMEAIINLELFARSQIDIFVEVLQVDGSDFCVAVNAATLALIDAGIPIKD 159
Query: 167 LAVAICCCSAES----------GYCILDPTKLEE 190
A+ +++ G ILD +EE
Sbjct: 160 YAIGCSVTVSDNLLGDDDDSGQGTGILDANWIEE 193
>gi|242046408|ref|XP_002461075.1| hypothetical protein SORBIDRAFT_02g040250 [Sorghum bicolor]
gi|241924452|gb|EER97596.1| hypothetical protein SORBIDRAFT_02g040250 [Sorghum bicolor]
Length = 261
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 82/205 (40%), Gaps = 29/205 (14%)
Query: 66 GDTKVLAAVYGPKAGTKKNENPE------KASIEVIWKPRTGQIGKPEKEYEIILKRTLQ 119
G TKV+ +V+GP+ K + S P GQ G KEY +L + L+
Sbjct: 70 GKTKVIVSVFGPRESKKAMMYSDIGRLNCNVSYTTFATPVRGQ-GADNKEYSSMLYKALE 128
Query: 120 SICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHL--AVAICCCSAE 177
+L P TT V V+ G+ LP I+ A AL DAGI M L +V++ C
Sbjct: 129 GAVMLHTFPKTTVDVFALVLESGGSDLPIIISCASLALADAGIMMYDLVTSVSVSCFGKN 188
Query: 178 SGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVD 237
I+DPT EE +GS +V P I G S
Sbjct: 189 ---IIIDPTSDEE-----------------AWQDGSLVVAFMPARKEITQLTLTGEWSDG 228
Query: 238 DYFHCLERGRAASAKLSDFLRRSLQ 262
+ +E A +KL D LR L+
Sbjct: 229 RITNAVELCMDACSKLGDILRDHLK 253
>gi|312065760|ref|XP_003135946.1| EXOSome component family member [Loa loa]
gi|307768890|gb|EFO28124.1| EXOSome component family member [Loa loa]
Length = 247
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 77/199 (38%), Gaps = 46/199 (23%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P Q+R L + +A GSA QG
Sbjct: 10 RQDGRKPYQIRNLNYKLGVYSQADGSAYLEQG---------------------------- 41
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASI-------------EVIWKPRTGQIGKPEKEYE 111
+TKVL AVYGP +++ E I E +PR + E+
Sbjct: 42 --NTKVLCAVYGPYEPKQRSRLLEDRCIINCQYSMATFSTNERKERPRGD---RRSLEFA 96
Query: 112 IILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAI 171
++++ ++ + P + V +++ DG+ L +N AL DAG+PM+ L A
Sbjct: 97 RLMEKAFEAAVLTENYPRSQIDVFCELLQADGSHLAACVNVGTLALADAGVPMRGLVAAA 156
Query: 172 CCCSAESGYCILDPTKLEE 190
C A +G +D EE
Sbjct: 157 SCACAPNGVACVDVNSREE 175
>gi|255725122|ref|XP_002547490.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240135381|gb|EER34935.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 225
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 65/127 (51%), Gaps = 7/127 (5%)
Query: 66 GDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILT 125
G TKV+ ++ GP ++ E P ++S+E+I +P TG EK E L+ LQS+ I
Sbjct: 25 GGTKVITSISGPIEPKQRQELPNQSSLEIIVRPATGLPTTREKLIEDKLRSVLQSVIISY 84
Query: 126 INPNTTTSVIIQVVHDDGAL------LPCAINAACAALVDAGIPMKHLAVAICCCSAESG 179
P V++Q + D ++ L AIN+ AL+DA + + + + A S SG
Sbjct: 85 KYPRQLIQVVVQFCNTDESVEFNVNELNAAINSCYFALIDADVAL-YSSFASVVISINSG 143
Query: 180 YCILDPT 186
I +PT
Sbjct: 144 NLIKEPT 150
>gi|414887731|tpg|DAA63745.1| TPA: hypothetical protein ZEAMMB73_187174 [Zea mays]
Length = 261
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 82/205 (40%), Gaps = 29/205 (14%)
Query: 66 GDTKVLAAVYGPKAGTKKNENPE------KASIEVIWKPRTGQIGKPEKEYEIILKRTLQ 119
G TKV+ +V+GP+ K + S P GQ G KEY +L + L+
Sbjct: 70 GKTKVIVSVFGPRESKKAMMYSDVGRLNCNVSYTTFATPVRGQ-GADNKEYSSMLHKALE 128
Query: 120 SICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHL--AVAICCCSAE 177
+L P TT V V+ G+ LP I+ A AL DAGI M L +V++ C
Sbjct: 129 GAVMLHTFPKTTVDVFALVLESGGSDLPIIISCASLALADAGIMMYDLVTSVSVSCFRKN 188
Query: 178 SGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVD 237
I+DPT EE +GS +V P I G S
Sbjct: 189 ---IIIDPTSDEE-----------------AWQDGSLVVAFMPARKEITQLTLTGEWSDG 228
Query: 238 DYFHCLERGRAASAKLSDFLRRSLQ 262
+ +E A +KL D LR L+
Sbjct: 229 RITNAVELCMDACSKLGDILRDRLK 253
>gi|405978444|gb|EKC42833.1| Exosome complex exonuclease MTR3 [Crassostrea gigas]
Length = 426
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 64/139 (46%), Gaps = 9/139 (6%)
Query: 62 WVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWK--------PRTGQIGKPEKEYEII 113
++ +TKV+ AVYGP+ TKK E K + +K R Q E++Y
Sbjct: 216 YIEQNETKVMCAVYGPREVTKKEEFSMKGQLTCEFKFATFSCRVRRQYQQDNEERDYSCQ 275
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
L+ L+ + P +V + V+ +DG+ L ++ A AL +AGI M L V C
Sbjct: 276 LQDALEPAVRMDKFPKAQVNVYVTVLQNDGSPLAASLTCASVALANAGIEMYDLVVG-CS 334
Query: 174 CSAESGYCILDPTKLEEQK 192
+DPT+ E+ K
Sbjct: 335 ARITPSEVFIDPTESEDYK 353
>gi|168063069|ref|XP_001783497.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162664987|gb|EDQ51687.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 246
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 80/190 (42%), Gaps = 41/190 (21%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P ++R L ++ A GSA +H
Sbjct: 12 RLDGRRPPEMRHLHAVVGVVPSADGSA-------------LFHM---------------- 42
Query: 65 SGDTKVLAAVYGP-KAGTKKNENPEKASIEVIWKPRTGQIGKPE---------KEYEIIL 114
G+T+V+A VYGP + K ++ +KA + + G+ E +++
Sbjct: 43 -GNTQVMAVVYGPHEVHNKAHQLHDKALVRCEYSMAAFSTGERRRRGKTDRRATELSLVI 101
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
+TL++ + + P + + +QV+ DG INAA AL DAGIPM+ L V+ C
Sbjct: 102 GQTLEAAIMTHLLPRSQIDIYVQVLQADGGTRAACINAASMALADAGIPMRDLVVS-CAA 160
Query: 175 SAESGYCILD 184
+ +LD
Sbjct: 161 GYLNSTPLLD 170
>gi|424811892|ref|ZP_18237132.1| ribosomal RNA-processing protein RRP41/SKI6 [Candidatus
Nanosalinarum sp. J07AB56]
gi|339756114|gb|EGQ39697.1| ribosomal RNA-processing protein RRP41/SKI6 [Candidatus
Nanosalinarum sp. J07AB56]
Length = 237
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 81/183 (44%), Gaps = 44/183 (24%)
Query: 4 DRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWV 63
+R DGR ++LR + +L A GSA V
Sbjct: 14 NRLDGRKRDELRETSMEVDVLENAEGSA------------------------------RV 43
Query: 64 GSGDTKVLAAVYGPKAGTKKN-ENPEKASIEVIW---------KPRTGQIGKPEKEYEII 113
+G+T+V+A+V+GP+ K+ + P++A I++ + + R G + KE ++
Sbjct: 44 ETGNTRVVASVFGPQELHPKHLQEPDRAVIKMRYNMAPFSVDDRMRPGP-NRRAKEIGLV 102
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
K+ L L PN + ++++ DG INAA AL DAGIPM+ L +
Sbjct: 103 SKKALAPAVDLHEFPNAGIDISMEIIESDGGTRVTGINAASLALADAGIPMEGL---VSA 159
Query: 174 CSA 176
C+A
Sbjct: 160 CAA 162
>gi|293335373|ref|NP_001168912.1| uncharacterized protein LOC100382718 [Zea mays]
gi|223973667|gb|ACN31021.1| unknown [Zea mays]
Length = 209
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 82/205 (40%), Gaps = 29/205 (14%)
Query: 66 GDTKVLAAVYGPKAGTKKNENPE------KASIEVIWKPRTGQIGKPEKEYEIILKRTLQ 119
G TKV+ +V+GP+ K + S P GQ G KEY +L + L+
Sbjct: 18 GKTKVIVSVFGPRESKKAMMYSDVGRLNCNVSYTTFATPVRGQ-GADNKEYSSMLHKALE 76
Query: 120 SICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHL--AVAICCCSAE 177
+L P TT V V+ G+ LP I+ A AL DAGI M L +V++ C
Sbjct: 77 GAVMLHTFPKTTVDVFALVLESGGSDLPIIISCASLALADAGIMMYDLVTSVSVSCFRKN 136
Query: 178 SGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVD 237
I+DPT EE +GS +V P I G S
Sbjct: 137 ---IIIDPTSDEE-----------------AWQDGSLVVAFMPARKEITQLTLTGEWSDG 176
Query: 238 DYFHCLERGRAASAKLSDFLRRSLQ 262
+ +E A +KL D LR L+
Sbjct: 177 RITNAVELCMDACSKLGDILRDRLK 201
>gi|386876598|ref|ZP_10118697.1| exosome complex exonuclease 1 [Candidatus Nitrosopumilus salaria
BD31]
gi|386805560|gb|EIJ65080.1| exosome complex exonuclease 1 [Candidatus Nitrosopumilus salaria
BD31]
Length = 244
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 64/273 (23%), Positives = 107/273 (39%), Gaps = 57/273 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR ++ R + L A GSA ++
Sbjct: 17 RCDGRKVDEPRRIMIKAGGLKNADGSA------------------------------YIE 46
Query: 65 SGDTKVLAAVYGPK-AGTKKNENPEKASIEVIWKPRTGQIGK------PEKEYEI--ILK 115
GD K+L V+GP+ K N + + V + +G+ +E EI ++K
Sbjct: 47 FGDNKILVGVFGPRDVHPKHMSNTDTGILRVRYHMEPFSVGERKNPAPSRREIEISKVIK 106
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
L+ +L P T V I+V+ DG A+ AA AL DAGIPM+ + AI
Sbjct: 107 EALEPAVMLDKFPRTAVDVFIEVLQADGGTRCAALTAASVALADAGIPMRDMVAAIAAGK 166
Query: 176 AESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMS 235
+ ILD E+Q + + + S+ E +L+Q G ++
Sbjct: 167 V-ADTVILDVNNEEDQAGQADMPIGYMPSL-----EKITLLQ------------LDGVLT 208
Query: 236 VDDYFHCLERGRAASAKLSDFLRRSLQSKLPGD 268
++Y C++ G + + +++LQ K G+
Sbjct: 209 PEEYKKCVQVGVDGCKIVYELQKKALQEKYFGN 241
>gi|1749490|dbj|BAA13803.1| unnamed protein product [Schizosaccharomyces pombe]
Length = 242
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 87/212 (41%), Gaps = 47/212 (22%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +++R C I +GSA FI+
Sbjct: 13 RNDGRRWDEMRNFQCRFGIEPSENGSA-------FIEL---------------------- 43
Query: 65 SGDTKVLAAVYGPKA---GTKKNENPEKASIEV-IWKPRTGQIGKPEKEYEII------L 114
G+TKVL V GP +K + ++E+ I T + K K I L
Sbjct: 44 -GNTKVLCIVDGPSEPVIKSKARADRTFVNVEINIASFSTIDVKKRFKSDRRIQLQCLAL 102
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
+ T + I + P + SV + V+ DDGA++ INA AL+DAGIP+K +CC
Sbjct: 103 QNTFEEIIQTELYPRSQISVYLHVLQDDGAVMASCINATTLALIDAGIPVKDF---VCCS 159
Query: 175 SA---ESGYCILDPTKLEEQKMKGFAYLVFPN 203
+A ES +LD LEE + V N
Sbjct: 160 TAGIVESDM-LLDLNSLEESALSWLTVAVLGN 190
>gi|403163440|ref|XP_003323509.2| hypothetical protein PGTG_05411 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375164298|gb|EFP79090.2| hypothetical protein PGTG_05411 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 312
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 72/303 (23%), Positives = 109/303 (35%), Gaps = 79/303 (26%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFC 60
M + R+D R +R L SIL R+ GSA +S
Sbjct: 1 MSIMRSDSRTEADIRSLTMRMSILSRSDGSAQFS-------------------------- 34
Query: 61 YWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQS 120
GD K L AV GP ++E P +A ++VI P G G P K +K
Sbjct: 35 ----FGDLKALGAVTGPAEVRIRDEKPTEAFVDVIVVPVCGLPGPPTKSLAHSIKSFFTP 90
Query: 121 ICILTINPNTTTSVIIQVVHD----------DGALLPCA-----------------INAA 153
+ +L P + + +Q + G L P A INAA
Sbjct: 91 LILLKKYPRSLIQINLQTLSKPSDRWTNGFTTGTLEPTATVPLFEETQSVSEKAALINAA 150
Query: 154 CAALVDAGIPMKHLAVAICCC---------------SAESGYCILDPTKLEEQKMKGFAY 198
AL+DAG+ M+ A A+ + ES +LDP+ EE K
Sbjct: 151 SLALLDAGVGMRGCAFAVGLAILPPSAVSPNHNNPQALESDLIVLDPSPTEESSAKSLHL 210
Query: 199 LVFPNSILSVLPEGSSLVQGEPMEHGIITSV-THGAMSVDDYFHCLERGRAASAKLSDFL 257
+ F G + +E G + ++G+ S D L+ A+ ++ F+
Sbjct: 211 VGFH------FGHGFNTTTDSGVEIGTVALCESNGSFSYDQLQTVLKLASLATQQILAFV 264
Query: 258 RRS 260
R+S
Sbjct: 265 RQS 267
>gi|303281836|ref|XP_003060210.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226458865|gb|EEH56162.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 245
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 94/196 (47%), Gaps = 41/196 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P + R + C+ +L A GSA +
Sbjct: 10 RLDGRRPKETRQMRCAMGVLPAADGSAEFR------------------------------ 39
Query: 65 SGDTKVLAAVYGPKAGTKKNE-NPEKASIEVIWKP---RTGQI---GKPEK---EYEIIL 114
+G+T+V+ AV+GP+ + E + E+A I+ + TG+ GK ++ E +++
Sbjct: 40 AGNTRVMCAVHGPRECVNRGERDDERAIIKCEFSQAAFSTGERRARGKGDRRSVELALVI 99
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
++ L++ ++ + P + +V+IQV+ DG + AINAA A+ +AGIPMK +A C
Sbjct: 100 RQALEATVLVHLAPRSEINVMIQVLQADGGVRAAAINAAVLAIANAGIPMKD-TMAACSA 158
Query: 175 SAESGYCILDPTKLEE 190
G +LD +EE
Sbjct: 159 GYLDGTPLLDLNYVEE 174
>gi|389748013|gb|EIM89191.1| hypothetical protein STEHIDRAFT_76109 [Stereum hirsutum FP-91666
SS1]
Length = 302
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 93/241 (38%), Gaps = 53/241 (21%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFC 60
M R DGR N+ RPL+ L R GSA RF
Sbjct: 1 MAQRRHDGRALNESRPLSIVYEGLDRVDGSA------RF--------------------- 33
Query: 61 YWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQS 120
G G TK LA+V GP +E+P K++ EV +P + K ++ L
Sbjct: 34 ---GFGPTKALASVSGPIEVRLASEHPSKSTFEVHLRPLSSLPSVESKSLASSIRALLSP 90
Query: 121 ICILTINPNTTTSVIIQVVH---------------------DDGALLPCAINAACAALVD 159
ILT NP T +++Q V + + +NA AALV
Sbjct: 91 SLILTRNPRTLIQLVVQAVSPLGDSASGSGSGRGGGRGRGRMGSSGVAACVNAGTAALVS 150
Query: 160 AG-IPMKHLAVAICCCSAE-SGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQ 217
AG +PM+ + AI + SG ++DP++ EE G +F +S GS +
Sbjct: 151 AGSVPMRGVVCAIAVGRLKASGLLVVDPSEDEELDATGCFAFMFADSAGGEKTSGSESIP 210
Query: 218 G 218
G
Sbjct: 211 G 211
>gi|302780062|ref|XP_002971806.1| hypothetical protein SELMODRAFT_441621 [Selaginella moellendorffii]
gi|300160938|gb|EFJ27555.1| hypothetical protein SELMODRAFT_441621 [Selaginella moellendorffii]
Length = 250
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 82/210 (39%), Gaps = 27/210 (12%)
Query: 62 WVGSGDTKVLAAVYGPKAGTKK---------NENPEKASIEVIWKPRTGQIGKPEKEYEI 112
+ SGDTKV+ +V+GP+ K N N + S + + G E++
Sbjct: 54 YAESGDTKVIVSVFGPRESKKAEAFSDAGRLNCNVKYCSFATPVRGKMGAANAEERDLSS 113
Query: 113 ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAIC 172
+L +++ L P TT V V+ G LP + A AL DAGI + L A+
Sbjct: 114 MLYKSVVGAVDLRTFPKTTVDVFALVLQSGGGDLPVIVTCASLALADAGIVLYDLVAAVS 173
Query: 173 CCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHG 232
S + G +LDP+ EE +GS +V P I G
Sbjct: 174 ASSIQ-GQVLLDPSTSEEN-----------------CEDGSLMVAYMPSRKEITQVTMTG 215
Query: 233 AMSVDDYFHCLERGRAASAKLSDFLRRSLQ 262
S LE A AK+ D +R L+
Sbjct: 216 EWSSSRASESLELCLDACAKIGDVMRSCLK 245
>gi|396082222|gb|AFN83832.1| exosome RNAse PH-like protein [Encephalitozoon romaleae SJ-2008]
Length = 188
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 61/120 (50%), Gaps = 1/120 (0%)
Query: 66 GDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKP-EKEYEIILKRTLQSICIL 124
+T V V+GP ++E+PEKA ++V WK G+ +K + +++R + IL
Sbjct: 23 NNTTVFCIVHGPSDAISRHEDPEKAFLDVRWKDMVLINGRIYDKYFSRVVERVISKNIIL 82
Query: 125 TINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILD 184
++ T +I VV + L CA+NAA AL D GIP+K + A + E + D
Sbjct: 83 ELDAWKTIQIIFNVVGEARNALFCAVNAALLALADGGIPLKSMFYASSSFTNEEEVVVFD 142
>gi|331237979|ref|XP_003331645.1| hypothetical protein PGTG_12810 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309310635|gb|EFP87226.1| hypothetical protein PGTG_12810 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 311
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 72/303 (23%), Positives = 109/303 (35%), Gaps = 79/303 (26%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFC 60
M + R+D R +R L SIL R+ GSA +S
Sbjct: 1 MSIMRSDSRTEADIRSLTMRMSILSRSDGSAQFS-------------------------- 34
Query: 61 YWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQS 120
GD K L AV GP ++E P +A ++VI P G G P K +K
Sbjct: 35 ----FGDLKALGAVTGPAEVRIRDEKPTEAFVDVIVVPVCGLPGPPTKSLAHSIKSFFTP 90
Query: 121 ICILTINPNTTTSVIIQVVHD----------DGALLPCA-----------------INAA 153
+ +L P + + +Q + G L P A INAA
Sbjct: 91 LILLKKYPRSLIQINLQTLSKPSDRWTNGFTTGTLEPSATVPLFEETQSVSEKAALINAA 150
Query: 154 CAALVDAGIPMKHLAVAICCC---------------SAESGYCILDPTKLEEQKMKGFAY 198
AL+DAG+ M+ A A+ + ES +LDP+ EE K
Sbjct: 151 SLALLDAGVGMRGCAFAVGLAILPPSAVSPNHNNPQALESDLIVLDPSPTEESSAKSLHL 210
Query: 199 LVFPNSILSVLPEGSSLVQGEPMEHGIITSV-THGAMSVDDYFHCLERGRAASAKLSDFL 257
+ F G + +E G + ++G+ S D L+ A+ ++ F+
Sbjct: 211 VGFH------FGHGFNTTTDSGVEIGTVALCESNGSFSYDQLQTVLKLASLATQQILAFV 264
Query: 258 RRS 260
R+S
Sbjct: 265 RQS 267
>gi|350409108|ref|XP_003488612.1| PREDICTED: exosome complex component RRP41-like [Bombus impatiens]
Length = 270
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 86/211 (40%), Gaps = 58/211 (27%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +LR + + +A GSA ++
Sbjct: 14 RPDGRRALELRQIRVKMGVFGQADGSA------------------------------YIE 43
Query: 65 SGDTKVLAAVYGP---KAGTKKNENP------------EKASIEVIWKPRTGQIGKPEKE 109
G+TK+L VYGP + T +N +S E KPR + +E
Sbjct: 44 QGNTKILVTVYGPHQPRGSTGRNTTKGIVNCQYSMAVFSLSSGERKRKPRGD---RKSQE 100
Query: 110 YEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAV 169
+ LK +++I L I P + + ++ + DG+ ++NAA AL+DAGIP+K+ A+
Sbjct: 101 RSLQLKHAMEAIIHLEIYPRSQIDIYVEALQVDGSEYCASVNAATLALIDAGIPIKNYAI 160
Query: 170 A-----ICCCSAES-----GYCILDPTKLEE 190
I S+E G +LD LEE
Sbjct: 161 GCTVTLINNPSSEDEDNTLGRGVLDANYLEE 191
>gi|343426755|emb|CBQ70283.1| probable exosome complex exonuclease rrp41 [Sporisorium reilianum
SRZ2]
Length = 272
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 86/216 (39%), Gaps = 51/216 (23%)
Query: 5 RADGRNPNQLRPLACSC--SILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYW 62
R DGR +LR +A S A GSA +QG
Sbjct: 13 RVDGRKQYELRSIAIQLGGSQDTAADGSAQITQGL------------------------- 47
Query: 63 VGSGDTKVLAAVYGPK-AGTKKNENPEKAS--IEVIWKPRTGQIGKPEK----------- 108
T V A V+GP+ A + N ++AS +EV P G E+
Sbjct: 48 -----TIVSATVFGPREARSGANVIHDRASLNVEVSLAP----WGSMERRRRNRGDRRLL 98
Query: 109 EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLA 168
E+ +K T + + + P + + +QV DG +LP AINA+ AL+DA I M H
Sbjct: 99 EFASSIKSTFEPVIHTHLYPRSQIDIFVQVHQQDGGVLPAAINASTLALLDASIAM-HDF 157
Query: 169 VAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNS 204
VA C S +LD + EEQ + V P +
Sbjct: 158 VASVSCGIHSTSAMLDLSNTEEQDLPHLTVAVLPRT 193
>gi|448262636|pdb|4IFD|D Chain D, Crystal Structure Of An 11-subunit Eukaryotic Exosome
Complex Bound To Rna
Length = 245
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 89/209 (42%), Gaps = 20/209 (9%)
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICIL 124
S DTKV+ +V GP + E P + ++E+I +P G EK E L+ L +
Sbjct: 43 SQDTKVICSVTGPIEPKARQELPTQLALEIIVRPAKGVATTREKVLEDKLRAVLTPLITR 102
Query: 125 TINPNTTTSVIIQVV---HDDGAL----LPCAINAACAALVDAGIPMKHLAVAI-CCCSA 176
P + Q++ D+ L C INAA ALVDAGI + + +I
Sbjct: 103 HCYPRQLCQITCQILESGEDEAEFSLRELSCCINAAFLALVDAGIALNSMCASIPIAIIK 162
Query: 177 ESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSV 236
++ I+DPT E+ K+ LSV V G + ++ ++G +
Sbjct: 163 DTSDIIVDPTA-EQLKIS-----------LSVHTLALEFVNGGKVVKNVLLLDSNGDFNE 210
Query: 237 DDYFHCLERGRAASAKLSDFLRRSLQSKL 265
D F LE G +L +RR +Q +
Sbjct: 211 DQLFSLLELGEQKCQELVTNIRRIIQDNI 239
>gi|300121002|emb|CBK21384.2| unnamed protein product [Blastocystis hominis]
Length = 204
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 64/118 (54%), Gaps = 12/118 (10%)
Query: 66 GDTKVLAAVYGPK-AGTKKNEN--PEKASIE--VIWKPRTGQIGKPE-------KEYEII 113
G+TKVLA VYGP+ AG+K + + +KA++ V P G + EY
Sbjct: 2 GNTKVLAVVYGPRDAGSKSSHDIDNDKATVSAGVTMAPYCGTERRVVHMNSRICTEYAQA 61
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAI 171
++R + + + T+ P++T S+ + DG LPC +NAA A++DAGI + V++
Sbjct: 62 IRRCFEHVILTTLYPHSTISIHCTIFQADGGELPCCLNAALLAIIDAGIDILDFQVSL 119
>gi|400596874|gb|EJP64630.1| 3' exoribonuclease family protein [Beauveria bassiana ARSEF 2860]
Length = 270
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 80/193 (41%), Gaps = 47/193 (24%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR N+LR L A GS+ ++
Sbjct: 14 RVDGRRWNELRRLHALIRTQDAADGSS------------------------------YLE 43
Query: 65 SGDTKVLAAVYGP-------KAGTKKNENPEKASIEV---------IWKPRTGQIGKPEK 108
G TKV+ V GP K G + N + + A++ V + + + G+ K +
Sbjct: 44 MGHTKVMCVVSGPSEQQQNQKRGGQANASRDGATVNVNIIIAGFSSVDRKKRGRNDKRIQ 103
Query: 109 EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLA 168
E EI + + L S I P+++ S+ + V+ DG+LL +NA AL+DAGIPM
Sbjct: 104 EMEITIAKALSSNLHTHIFPHSSISISLHVLSQDGSLLAALLNATTLALIDAGIPMNDY- 162
Query: 169 VAICCCSAESGYC 181
+A C + S +
Sbjct: 163 IAACTAGSTSSFA 175
>gi|401827619|ref|XP_003888102.1| RNase PH-like protein [Encephalitozoon hellem ATCC 50504]
gi|392999302|gb|AFM99121.1| RNase PH-like protein [Encephalitozoon hellem ATCC 50504]
Length = 188
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 66 GDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKP-EKEYEIILKRTLQSICIL 124
+T V V+GP T + E+PEKA ++V WK G+ +K + +++R L IL
Sbjct: 23 NNTTVFCTVHGPSDATSRQEDPEKAFLDVRWKDMILINGRIYDKYFSKVIERVLSKNIIL 82
Query: 125 TINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILD 184
++ T V VV + L CA+NAA AL D GIP+K + A E I D
Sbjct: 83 ELDACRTIQVGFNVVGETRNALFCAVNAALLALADGGIPLKSMFYASSSFMHEEEVIIFD 142
>gi|116182446|ref|XP_001221072.1| hypothetical protein CHGG_01851 [Chaetomium globosum CBS 148.51]
gi|88186148|gb|EAQ93616.1| hypothetical protein CHGG_01851 [Chaetomium globosum CBS 148.51]
Length = 253
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 100/227 (44%), Gaps = 37/227 (16%)
Query: 72 AAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTT 131
A+V GP +++E+ +A +EVI +P G G E+ E +L+ +L + ++ P +
Sbjct: 32 ASVNGPIEAQRRDEHAYEAHVEVIVRPAAGVGGTRERHLESLLQSSLAQLILVKNFPRSL 91
Query: 132 TSVIIQVVHD---------------DGALLPCAINAACAALVDAGIPMKHLAVAICCCSA 176
V++Q+ + A++P + A AL+ AG+PM+ A A
Sbjct: 92 IQVVLQIEDSPENDYVNTKLVQASLNFAIMPALVQTAILALLSAGVPMRATATATAVAVV 151
Query: 177 E---SGYCILDPTKLEEQKMKGFAYLVFP--NSILSVLPEGSSLVQGE-----PMEHGI- 225
+ ++DP++ E + L F N +L EG V GE GI
Sbjct: 152 HQDGAKKTVVDPSQREVETASSVHVLAFTSHNGLLLAESEGDFTV-GEWDDVYETAKGIC 210
Query: 226 --ITSVTHG-AMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGDL 269
TSV G AM +DD ++ + FLR +++SK+ DL
Sbjct: 211 CRSTSVKEGTAMVLDDE-------EPSATDMRQFLRSTMESKVAADL 250
>gi|409077801|gb|EKM78166.1| hypothetical protein AGABI1DRAFT_101423 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426199140|gb|EKV49065.1| hypothetical protein AGABI2DRAFT_191204 [Agaricus bisporus var.
bisporus H97]
Length = 260
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 82/210 (39%), Gaps = 41/210 (19%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R+DGR +LR + + + A GSA + G
Sbjct: 14 RSDGRRQFELREVTINLAQQGHADGSAIITHGL--------------------------- 46
Query: 65 SGDTKVLAAVYGPKAGTKKNEN-PEKASIEVIWKPRTGQIGKPEK---------EYEIIL 114
T+VL +V+GP+ +++ ++A+I V G+ K E L
Sbjct: 47 ---TQVLVSVFGPREAKMRSQTIHDRANINVDVNVAAFSAGERRKRSRGDKRILEIASTL 103
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
K T + + T+ P + V + V+ DG LL IN AL++AGIPM A+
Sbjct: 104 KSTFEPVVQTTLYPRSQIDVYVTVLQQDGGLLQTCINGTTLALINAGIPMLDFVCAV-TG 162
Query: 175 SAESGYCILDPTKLEEQKMKGFAYLVFPNS 204
S +LD T LEE + + P +
Sbjct: 163 GVHSTSPLLDLTTLEENDVPHVTVAIMPKT 192
>gi|396460216|ref|XP_003834720.1| similar to exosome complex exonuclease RRP41 [Leptosphaeria
maculans JN3]
gi|312211270|emb|CBX91355.1| similar to exosome complex exonuclease RRP41 [Leptosphaeria
maculans JN3]
Length = 280
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 74/177 (41%), Gaps = 41/177 (23%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR N+LR + S A GS+ ++
Sbjct: 14 RLDGRRWNELRRIHAQISTQAAADGSS------------------------------YLE 43
Query: 65 SGDTKVLAAVYGPKAG-----TKKNENPEKASIEVIWKPRTGQIGKPEK------EYEII 113
G+TK+L +V GP G K +E+ + +G + K E E
Sbjct: 44 MGNTKILVSVTGPAEGRQSGQRGGQNGQGKVEVEINFAGFSGVDRRKRKSDKRTSEMEHC 103
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVA 170
L+ + + +L + P++T ++ I ++ DG+LL INAA AL+DAGIPM VA
Sbjct: 104 LRSAFEGVLLLHLYPHSTITLNIHIISQDGSLLAACINAATLALIDAGIPMSDYLVA 160
>gi|405119992|gb|AFR94763.1| hypothetical protein CNAG_01381 [Cryptococcus neoformans var.
grubii H99]
Length = 299
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 72/315 (22%), Positives = 111/315 (35%), Gaps = 84/315 (26%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P QLRPL S L RA GSA F F
Sbjct: 9 RPDGRTPAQLRPLHLSIGELDRADGSAR------------------FAF----------- 39
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICIL 124
G VLA+ GP + E P+KA+ EV +P G P + L+ I L
Sbjct: 40 -GSNAVLASCSGPIEVRLREELPDKATFEVNHRPLEGVGATPSRALVTTLETIFPPILSL 98
Query: 125 TINPNTTTSVIIQVV-----------------------------HDDGALLP-------- 147
+P + +++Q + DD A +P
Sbjct: 99 EKHPRSLVQLVVQSLVPSTGRALYGSVIGAEGVGAEQNTWPATDKDDYAYVPESRRDAAR 158
Query: 148 -------------CAINAACAALVDAG-IPMKHLAVAICCCSAESGYCILDPTKLEEQKM 193
+INA+ AL+ AG + + L +A+ G +LDP EE++
Sbjct: 159 ISPAAGYTFTARAASINASTLALLSAGTVSILALPIAVALVVTTKGRVMLDPEADEEKQA 218
Query: 194 KG-FAYLVFPNSILSVLPEGSSLVQGEPMEHG--IITSVTHGAMSVDDYFHCLERGRAAS 250
K F + + E +++ E G ++ G + ++ L+ R AS
Sbjct: 219 KARFGFGWAWGAAFGTANEENNVEAAGQSEKGAELVWIENEGDFTRQEWSEALQMSRVAS 278
Query: 251 AKLSDFLRRSLQSKL 265
+ +F+R L + L
Sbjct: 279 KAILEFIRTQLDAHL 293
>gi|58266526|ref|XP_570419.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|134110532|ref|XP_776093.1| hypothetical protein CNBD1410 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50258761|gb|EAL21446.1| hypothetical protein CNBD1410 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57226652|gb|AAW43112.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 308
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 75/317 (23%), Positives = 117/317 (36%), Gaps = 88/317 (27%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P QLRPL S L RA GSA F F
Sbjct: 18 RPDGRTPAQLRPLHLSIGELDRADGSAR------------------FAF----------- 48
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICIL 124
G VLA+ GP + E P+KA+ EV +P G P + L+ I L
Sbjct: 49 -GSNAVLASCSGPIEVRLREELPDKATFEVNHRPLEGVGATPSRALVTTLETIFPPILSL 107
Query: 125 TINPNTTTSVIIQ--------VVH---------------------DDGALLP-------- 147
+P + +++Q VV+ DD A +P
Sbjct: 108 EKHPRSLVQLVVQSLVPSTGRVVYGSVFGAEGVGAEQNTWPATDKDDYAYIPESRKDAAR 167
Query: 148 -------------CAINAACAALVDAG-IPMKHLAVAICCCSAESGYCILDPTKLEEQKM 193
+INA+ AL+ AG I + L VA+ G +LDP EE++
Sbjct: 168 ISPAAGYTFTARAASINASTLALLSAGTISILALPVAVALVVTTKGRVMLDPEADEEKQA 227
Query: 194 K---GFAYLVFPNSILSVLPEGSSLVQGEPMEHG--IITSVTHGAMSVDDYFHCLERGRA 248
K GF + ++ E +++ + G ++ + G+ + ++ L+ +
Sbjct: 228 KARLGFGWAW--GAVFGTANEENNMGVAGQNDGGAELVWIESEGSFTRQEWSEALQMSKT 285
Query: 249 ASAKLSDFLRRSLQSKL 265
AS + +F+R L + L
Sbjct: 286 ASKAILEFIRIQLDAHL 302
>gi|297803352|ref|XP_002869560.1| hypothetical protein ARALYDRAFT_492045 [Arabidopsis lyrata subsp.
lyrata]
gi|297315396|gb|EFH45819.1| hypothetical protein ARALYDRAFT_492045 [Arabidopsis lyrata subsp.
lyrata]
Length = 256
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 78/198 (39%), Gaps = 42/198 (21%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFC 60
++ R DGR +Q RP + A GSA + F
Sbjct: 30 LDWSRPDGRGFHQCRPALLQTGAVSSASGSA-------------YAEF------------ 64
Query: 61 YWVGSGDTKVLAAVYGPKAGTKKNENPE------KASIEVIWKPRTGQIGKPEKEYEIIL 114
G+TKV+ +V+GP+ K + S P GQ G KEY +L
Sbjct: 65 -----GNTKVIVSVFGPRESKKAMVFSDVGRLNCNVSYTTFASPTLGQ-GTDHKEYSSML 118
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHL--AVAIC 172
+ L+ + I+ P TT V V+ G+ L I+ A AL DAGI M L AV++
Sbjct: 119 HKALEGVIIMETFPKTTVDVFALVLESGGSDLSVVISCASLALADAGIMMYDLITAVSVS 178
Query: 173 CCSAESGYCILDPTKLEE 190
C ++DP EE
Sbjct: 179 CIGKS---LMIDPVTEEE 193
>gi|149430580|ref|XP_001515504.1| PREDICTED: exosome complex component RRP41-like [Ornithorhynchus
anatinus]
Length = 245
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 74/183 (40%), Gaps = 44/183 (24%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +LR + + +A GSA ++
Sbjct: 13 RVDGRRAGELRKIEARMGVFAQADGSA------------------------------YIE 42
Query: 65 SGDTKVLAAVYGPKA--GTKKNENPEKASIEVIWKPRTGQIGKPEK---------EYEII 113
G+TK LA VYGP G + P++A + + T G+ ++ E
Sbjct: 43 QGNTKALAVVYGPHEMRGLRSRALPDRALVNCQFSMATFSTGERKRRPHGDRKATEMSQH 102
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
L++T + + + P + + +Q++ DG +NAA A++DAGIP++ +C
Sbjct: 103 LQQTFEDAILTQLYPRSQIDIYVQILQADGGNYAACVNAATLAVLDAGIPLRDF---VCA 159
Query: 174 CSA 176
SA
Sbjct: 160 SSA 162
>gi|406606222|emb|CCH42404.1| Polyribonucleotide nucleotidyltransferase [Wickerhamomyces
ciferrii]
Length = 221
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 90/211 (42%), Gaps = 20/211 (9%)
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICIL 124
+G+TKV+++V GP + E P +++EVI + G EK E L+ L + I
Sbjct: 21 AGETKVISSVSGPIEPKARQELPTTSALEVIIRADIGVSNTREKLLEDKLRAILSQVIIG 80
Query: 125 TINPNTTTSVIIQVVHD------DGALLPCAINAACAALVDAGIPMKHLAVAICCCSAES 178
+ P + QV+ L +N++ AL+DA I + A ES
Sbjct: 81 HLFPRQLIQITSQVLESGEDREYTSKELSAIVNSSYLALIDANIGLSVSFAAQDIAITES 140
Query: 179 GYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDD 238
G I PTK + + K +V+ ++ GEP I+ S + G + D+
Sbjct: 141 GELIAGPTKEQLRSSKSSHVVVY------------AIENGEP--SNILFSDSIGTFTEDE 186
Query: 239 YFHCLERGRAASAKLSDFLRRSLQSKLPGDL 269
+ L + + K+ R++LQ K+ D
Sbjct: 187 VYRVLAIAKQHTGKVHQKFRKTLQEKVEKDF 217
>gi|159474468|ref|XP_001695347.1| 3'-5' exoribonuclease PH component of the exosome [Chlamydomonas
reinhardtii]
gi|158275830|gb|EDP01605.1| 3'-5' exoribonuclease PH component of the exosome [Chlamydomonas
reinhardtii]
Length = 245
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 87/196 (44%), Gaps = 41/196 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P +LR + C +L A GSA + G
Sbjct: 10 RLDGRRPRELRRINCQLDVLSNADGSAIFEMG---------------------------- 41
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEV----------IWKPRTGQIGKPEKEYEIIL 114
+TKVLAAV+GP A T+++E E+ ++ V + R G+ + E +++
Sbjct: 42 --NTKVLAAVFGPHAVTRRSELREEGALVVCEYSMAAFSTGERRRRGKGDRRSTELSMVI 99
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
+ TL+ I + P + V +QV+ DG AINAA AL AG+P++ L VA C
Sbjct: 100 RNTLEQAVITELLPRSQIDVYVQVLQADGGTRCAAINAAVLALAAAGVPLRDL-VAGCAA 158
Query: 175 SAESGYCILDPTKLEE 190
G +LD E+
Sbjct: 159 GYLDGTALLDLNYTED 174
>gi|345565548|gb|EGX48497.1| hypothetical protein AOL_s00080g126 [Arthrobotrys oligospora ATCC
24927]
Length = 246
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 81/195 (41%), Gaps = 44/195 (22%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILH-RAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYF 59
ME R DGR N+LR + C S A GS+ QGF
Sbjct: 1 MEGLRNDGRRWNELRRIHCQLSTSSTNADGSSYIEQGF---------------------- 38
Query: 60 CYWVGSGDTKVLAAVYGPKAGTKKNENPEKASI---EVIW-------KPRTGQIGKPEKE 109
TKVL V GP + + + + A+ EV + + + G+ K +E
Sbjct: 39 --------TKVLCNVTGPAEPSSRQKVKQDAATVTCEVYFAAFSGTDRIKRGRNDKKVQE 90
Query: 110 YEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAV 169
+ +++T S+ + + + ++ I ++ DG L INA AL+DAGIP+K
Sbjct: 91 LQTAIQKTFASVILTHLFSRSEITISIHILSQDGGTLAACINATTLALIDAGIPLKDY-- 148
Query: 170 AICCCSAESGYCILD 184
+C C++ I D
Sbjct: 149 -VCACTSGQSTSIFD 162
>gi|296423938|ref|XP_002841509.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637749|emb|CAZ85700.1| unnamed protein product [Tuber melanosporum]
Length = 204
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 56/113 (49%), Gaps = 8/113 (7%)
Query: 66 GDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILT 125
G T +LA++ GP ++E P +A +E+ +P G EK E +L+ + + I T
Sbjct: 11 GPTTLLASINGPIEVKPRDEIPLEAYLEITIRPSAGVTSVREKHLEALLRSAISPLIIRT 70
Query: 126 INPNTTTSVIIQVVHDDGA--------LLPCAINAACAALVDAGIPMKHLAVA 170
P T + +QV+ + A LL AI ALVDAG+PM+ + A
Sbjct: 71 AYPRTLLQITLQVIQHEQASMAYALHTLLTSAIVVVMLALVDAGVPMRGMLAA 123
>gi|46135695|ref|XP_389539.1| hypothetical protein FG09363.1 [Gibberella zeae PH-1]
Length = 238
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 81/210 (38%), Gaps = 52/210 (24%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR N+LR L A GS+ ++
Sbjct: 14 RVDGRRWNELRRLHAQIRTQDAADGSS------------------------------YLE 43
Query: 65 SGDTKVLAAVYGPKAGTKK-------------NENPEKASIEVIWKPRTGQIGKPEKEYE 111
G TKV+ V GP ++ N N A + + + G+ K +E E
Sbjct: 44 MGHTKVMCVVTGPSEQQQRRGGQQAGRDMAAINVNVVVAGFSSVDRKKRGRNDKRIQEIE 103
Query: 112 IILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAI 171
+ L S + PN++ S+ + V+ DG+LL INA AL+DAGIPM +A
Sbjct: 104 TTIANALSSNLHTHLFPNSSISISLHVLSQDGSLLAALINATTLALIDAGIPMSDY-IAA 162
Query: 172 CCCSAESGYC--------ILDPTKLEEQKM 193
C + S Y +LD EEQ++
Sbjct: 163 CTAGSTSTYAAGDDNADPLLDLNNQEEQEL 192
>gi|356539380|ref|XP_003538176.1| PREDICTED: exosome complex component MTR3-like [Glycine max]
Length = 255
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 69/264 (26%), Positives = 100/264 (37%), Gaps = 55/264 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +Q RP ++ A GSA + F
Sbjct: 33 RPDGRGFHQCRPAFFRTGAVNAASGSA-------------YAEF---------------- 63
Query: 65 SGDTKVLAAVYGPKAGTKKNENPE------KASIEVIWKPRTGQIGKPEKEYEIILKRTL 118
G+TKV+ +V+GP+ K + S P GQ G KEY +L + L
Sbjct: 64 -GNTKVIVSVFGPRESKKAMMYSDIGRLNCNVSFTTFATPIRGQ-GSDHKEYCAMLHKAL 121
Query: 119 QSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAES 178
+ IL P TT V V+ G+ LP I+ A AL DAGI M + VA S +
Sbjct: 122 EGAIILETFPKTTVDVFALVLESSGSDLPVVISCASLALADAGIMMYDI-VASVSVSCFN 180
Query: 179 GYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDD 238
++DP LEE+ + +GS ++ P + I G S
Sbjct: 181 KNLVIDPI-LEEE----------------IGQDGSLMITCMPSRYEITQLTVTGEWSTTK 223
Query: 239 YFHCLERGRAASAKLSDFLRRSLQ 262
++ A AKL+ +R L+
Sbjct: 224 INEGMQLCLDACAKLAKIMRSCLK 247
>gi|407464319|ref|YP_006775201.1| exosome complex exonuclease 1 [Candidatus Nitrosopumilus sp. AR2]
gi|407047507|gb|AFS82259.1| exosome complex exonuclease 1 [Candidatus Nitrosopumilus sp. AR2]
Length = 244
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 77/196 (39%), Gaps = 40/196 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR ++ R + L A GSA ++
Sbjct: 17 RCDGRKVDEPRRIMIKAGGLKNADGSA------------------------------YIE 46
Query: 65 SGDTKVLAAVYGPK-AGTKKNENPEKASIEVIWKPRTGQIGK------PEKEYEI--ILK 115
GD K+L V+GP+ K N + + V + +G+ +E EI ++K
Sbjct: 47 FGDNKILVGVFGPRDVHPKHMSNTDTGILRVRYHMEPFSVGERKNPAPSRREIEISKVIK 106
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
L+ +L P T V I+V+ DG A+ AA AL DAGIPM+ + AI
Sbjct: 107 EALEPAVMLEKFPRTAVDVFIEVLQADGGTRCAALTAASVALADAGIPMRDMVAAIAAGK 166
Query: 176 AESGYCILDPTKLEEQ 191
+ ILD E+Q
Sbjct: 167 V-ADTVILDVNNEEDQ 181
>gi|52550472|gb|AAU84321.1| ribonuclease PH [uncultured archaeon GZfos9D1]
Length = 245
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 87/221 (39%), Gaps = 45/221 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR ++LRP+ +L RA GS CY
Sbjct: 13 RLDGRGFDELRPIKIEVGVLKRADGS--------------------------CYLEL--- 43
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTG--------QIGKPEKEYEI--IL 114
G+ KV+AAVYGP+ ++ K ++ V ++ + G + EI +
Sbjct: 44 -GNNKVIAAVYGPREMHPRHAQDAKMAV-VKFRYNMAPFSTDDRKRPGPDRRSVEISKVC 101
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
+ + + + P V ++++ D INAA AL DAGIPMK L +I
Sbjct: 102 REAFDPVIMRELYPKMGIDVYVELLQSDAGTRTAGINAASIALADAGIPMKDLVSSIAVG 161
Query: 175 SAESGYCILDPTKLEEQKMKG---FAYLVFPNSILSVLPEG 212
G +LD E+ + A + N+I ++ +G
Sbjct: 162 KI-GGEMVLDLNAAEDNNGEADMPIAMIARTNTITALQMDG 201
>gi|363748182|ref|XP_003644309.1| hypothetical protein Ecym_1249 [Eremothecium cymbalariae
DBVPG#7215]
gi|356887941|gb|AET37492.1| hypothetical protein Ecym_1249 [Eremothecium cymbalariae
DBVPG#7215]
Length = 220
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 75/162 (46%), Gaps = 11/162 (6%)
Query: 61 YWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQS 120
YW + T ++ +V GP + E P+ +IE+I++P +G EK E ++ +
Sbjct: 15 YWTPT--TSLICSVSGPIEPKARQEIPQHLAIEIIFRPASGPSTTREKLLEERIRAAVTP 72
Query: 121 ICILTINPNTTTSVIIQVVHDDGAL----LPCAINAACAALVDAGIPMKHLAVAICCCSA 176
+ ++P + Q + G L AINAA AL+DAGIP+K + ++
Sbjct: 73 MVETFLHPRQLCQITFQALKSVGQYSHMELNSAINAAFLALIDAGIPLKSVFTSVTVSVD 132
Query: 177 ESGYCILDPTKLEEQKMKGFAYLVFP-----NSILSVLPEGS 213
E G ++P Q K + + F N++L + +GS
Sbjct: 133 EDGRKFVNPDVNRLQTAKSVSTVAFKISTGNNTLLLLHSDGS 174
>gi|156398683|ref|XP_001638317.1| predicted protein [Nematostella vectensis]
gi|156225437|gb|EDO46254.1| predicted protein [Nematostella vectensis]
Length = 268
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 80/194 (41%), Gaps = 41/194 (21%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P++LRP+ ++ +A GSA ++
Sbjct: 36 RQDGRRPDELRPMFLRAGVVSQAKGSA------------------------------YIE 65
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEK---------ASIEVIWKPRTGQIGKPEKEYEIILK 115
+TKV+ A+YGP+ ++ E K A I++ + Q + EKE ++
Sbjct: 66 MKNTKVICAIYGPREAPRRQEFSMKGRLTCEFKFAPFSCIYRRKHIQDAE-EKENSYLVV 124
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
+ L+ L P + I V+ +DG+ L I A AL AGI M L V+ C
Sbjct: 125 QALEPAVCLEKFPKAQVDIYITVLENDGSALSAGIICASVALAMAGIEMLDL-VSACTMV 183
Query: 176 AESGYCILDPTKLE 189
+ ++DP + E
Sbjct: 184 QSDNHILMDPCEKE 197
>gi|340712754|ref|XP_003394920.1| PREDICTED: exosome complex component RRP41-like isoform 1 [Bombus
terrestris]
Length = 270
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 86/211 (40%), Gaps = 58/211 (27%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +LR + + +A GSA ++
Sbjct: 14 RPDGRRALELRQIRVKMGVFGQADGSA------------------------------YIE 43
Query: 65 SGDTKVLAAVYGP---KAGTKKNENP------------EKASIEVIWKPRTGQIGKPEKE 109
G+TK+L VYGP + T +N +S E +PR + +E
Sbjct: 44 QGNTKILVTVYGPHQPRGSTGRNTTKGIVNCQYSMAVFSLSSGERKRRPRGD---RKSQE 100
Query: 110 YEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAV 169
+ LK +++I L I P + + ++ + DG+ ++NAA AL+DAGIP+K+ A+
Sbjct: 101 RSLQLKHAMEAIIHLEIYPRSQIDIYVEALQVDGSEYCTSVNAATLALIDAGIPIKNYAI 160
Query: 170 A-----ICCCSAES-----GYCILDPTKLEE 190
I S+E G +LD LEE
Sbjct: 161 GCTVTLINNPSSEDEDNTLGRGVLDANYLEE 191
>gi|407461957|ref|YP_006773274.1| exosome complex exonuclease 1 [Candidatus Nitrosopumilus koreensis
AR1]
gi|407045579|gb|AFS80332.1| exosome complex exonuclease 1 [Candidatus Nitrosopumilus koreensis
AR1]
Length = 244
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 78/196 (39%), Gaps = 40/196 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR ++ R + L A GSA ++
Sbjct: 17 RCDGRTVDEPRRIMIKAGGLKNADGSA------------------------------YIE 46
Query: 65 SGDTKVLAAVYGPK-AGTKKNENPEKASIEVIWKPRTGQIGKPE------KEYEI--ILK 115
GD K+L V+GP+ K N + + V + +G+ + +E EI ++K
Sbjct: 47 FGDNKILVGVFGPRDVHPKHMSNTDTGILRVRYHMEPFSVGERKNPAPSRREIEISKVIK 106
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
L+ +L P T V I+V+ DG A+ AA AL DAGIPM+ + AI
Sbjct: 107 EALEPAVMLDKFPRTAVDVFIEVLQADGGTRCAALTAASVALADAGIPMRDMVAAIAAGK 166
Query: 176 AESGYCILDPTKLEEQ 191
+ ILD E+Q
Sbjct: 167 V-ADTVILDVNNEEDQ 181
>gi|430813508|emb|CCJ29143.1| unnamed protein product [Pneumocystis jirovecii]
Length = 250
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/246 (22%), Positives = 102/246 (41%), Gaps = 46/246 (18%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR N+LR I + A GS+ +V
Sbjct: 12 RIDGRRWNELRHFTAKVDIDNFADGSS------------------------------YVE 41
Query: 65 SGDTKVLAAVYGP---KAGTKKNENPEKASIEV-------IWKPRTGQIGKPEKEYEIIL 114
G+TKV+ V+GP +K + + E+ +I++ + + + + K +EY +
Sbjct: 42 QGNTKVICMVHGPIEPNTKSKVSLDRERITIDISIAAFSSVERKKRTKSDKRIQEYVACI 101
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGAL----LPCAINAACAALVDAGIPMKHLAVA 170
++ + ++P + ++ IQV+ DG + L INA AL++AGIPM A
Sbjct: 102 QKVFEKAIQTGLHPRSEINICIQVLAQDGGMFNRILQTCINAVSLALINAGIPMYDYVSA 161
Query: 171 ICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVT 230
S ++ +LD +EE + + + S +L + + + E EH +++
Sbjct: 162 STVGSTDTD-PLLDLNAVEENSISWYTVAILGKSEDIILLQTETRIHMEKFEH-MLSLAL 219
Query: 231 HGAMSV 236
HG +
Sbjct: 220 HGCQQI 225
>gi|408395559|gb|EKJ74738.1| hypothetical protein FPSE_05073 [Fusarium pseudograminearum CS3096]
Length = 266
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 81/210 (38%), Gaps = 52/210 (24%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR N+LR L A GS+ ++
Sbjct: 14 RVDGRRWNELRRLHAQIRTQDAADGSS------------------------------YLE 43
Query: 65 SGDTKVLAAVYGPKAGTKK-------------NENPEKASIEVIWKPRTGQIGKPEKEYE 111
G TKV+ V GP ++ N N A + + + G+ K +E E
Sbjct: 44 MGHTKVMCVVTGPSEQQQRRGGQQAGRDMAAINVNVVVAGFSSVDRKKRGRNDKRIQEIE 103
Query: 112 IILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAI 171
+ L S + PN++ S+ + V+ DG+LL INA AL+DAGIPM +A
Sbjct: 104 TTIANALSSNLHTHLFPNSSISISLHVLSQDGSLLAALINATTLALIDAGIPMSDY-IAA 162
Query: 172 CCCSAESGYC--------ILDPTKLEEQKM 193
C + S Y +LD EEQ++
Sbjct: 163 CTAGSTSTYAAGDDNADPLLDLNNQEEQEL 192
>gi|383847639|ref|XP_003699460.1| PREDICTED: exosome complex component RRP41-like [Megachile
rotundata]
Length = 273
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 90/229 (39%), Gaps = 62/229 (27%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +LR + + +A GSA ++
Sbjct: 14 RPDGRRALELRQIRIKMGVFGQADGSA------------------------------YIE 43
Query: 65 SGDTKVLAAVYG---PKAGTKKNENPEKASI---------------EVIWKPRTGQIGKP 106
G+TK+L VYG P+ T ++ + I E KPR +
Sbjct: 44 QGNTKILVTVYGPHQPRGSTGRSTSKVTKGIVNCQYSMAVFSLSSGERKRKPRG---DRK 100
Query: 107 EKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKH 166
+E + LK +++I L + P + + ++V+ DG+ +INA+ AL+DAGIP+K+
Sbjct: 101 SQEKSLQLKHAMEAIIHLELYPRSQIDIYVEVLQVDGSEYCASINASTLALIDAGIPIKN 160
Query: 167 LAVAICCCSAES----------GYCILDPTKLEE-QKMKGFAYLVFPNS 204
AV S G +LD +EE + + + PNS
Sbjct: 161 YAVGCTVTLINSSSLDNEDSSLGTGVLDANYIEECNRGVTLSVIALPNS 209
>gi|115474519|ref|NP_001060856.1| Os08g0116800 [Oryza sativa Japonica Group]
gi|50725627|dbj|BAD33094.1| putative ribonuclease PH [Oryza sativa Japonica Group]
gi|113622825|dbj|BAF22770.1| Os08g0116800 [Oryza sativa Japonica Group]
gi|125559948|gb|EAZ05396.1| hypothetical protein OsI_27604 [Oryza sativa Indica Group]
gi|125601990|gb|EAZ41315.1| hypothetical protein OsJ_25825 [Oryza sativa Japonica Group]
gi|215686578|dbj|BAG88831.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 262
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 82/205 (40%), Gaps = 29/205 (14%)
Query: 66 GDTKVLAAVYGPKAGTKKNENPE------KASIEVIWKPRTGQIGKPEKEYEIILKRTLQ 119
G TKV+ +V+GP+ K + S P GQ G KEY +L + L+
Sbjct: 72 GKTKVIVSVFGPRESKKAMLYSDTGRLNCNVSYTTFATPIRGQ-GMDNKEYSAMLHKALE 130
Query: 120 SICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHL--AVAICCCSAE 177
+L P TT V V+ G+ LP I+ A AL DAGI + L +V++ C
Sbjct: 131 GAVMLHTFPKTTVDVFALVLESGGSDLPIIISCASLALADAGIMIYDLVTSVSVSCFGKN 190
Query: 178 SGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVD 237
I+DPT EE +GS +V P I G S
Sbjct: 191 ---IIIDPTSDEE-----------------AWQDGSIMVAYMPARKEITQLTLTGEWSDG 230
Query: 238 DYFHCLERGRAASAKLSDFLRRSLQ 262
+ +E A +KL D LR L+
Sbjct: 231 KITNAVELCMDACSKLCDILRERLK 255
>gi|225715268|gb|ACO13480.1| Exosome complex exonuclease RRP41 [Esox lucius]
Length = 245
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 72/183 (39%), Gaps = 44/183 (24%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +LR + + +A GSA ++
Sbjct: 13 RLDGRKATELRKVQARMGVFAQADGSA------------------------------YIE 42
Query: 65 SGDTKVLAAVYGP---KAGTKK--------NENPEKASIEVIWKPRTGQIGKPEKEYEII 113
G+TK LA VYGP + K N A+ + R + E +
Sbjct: 43 QGNTKALAVVYGPHEVRMSRSKTLHDRAVINCQYSMATFSTAERKRRPHGDRKSTEMSLH 102
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
LK+T ++ + + P + + ++++ DG +NAA A++DAGIPM+ +C
Sbjct: 103 LKQTFEAAVLTNLYPRSQIDIYVKILQSDGGNYSACVNAATLAVIDAGIPMRDY---VCA 159
Query: 174 CSA 176
C+A
Sbjct: 160 CTA 162
>gi|302760867|ref|XP_002963856.1| hypothetical protein SELMODRAFT_80529 [Selaginella moellendorffii]
gi|300169124|gb|EFJ35727.1| hypothetical protein SELMODRAFT_80529 [Selaginella moellendorffii]
Length = 250
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 69/163 (42%), Gaps = 13/163 (7%)
Query: 62 WVGSGDTKVLAAVYGPKAGTKK---------NENPEKASIEVIWKPRTGQIGKPEKEYEI 112
+ SGDTKV+ +V+GP+ K N N + S + + G E++
Sbjct: 54 YAESGDTKVIVSVFGPRESKKAEAFSDAGRLNCNVKYCSFATPVRGKMGAANAEERDLSS 113
Query: 113 ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAIC 172
+L +++ L P TT V V+ G LP + A AL DAGI + L A+
Sbjct: 114 MLYKSVVGAVDLRTFPKTTVDVFALVLQSGGGDLPVIVTCASLALADAGIVLYDLVAAVS 173
Query: 173 CCSAESGYCILDPTKLEEQKMKG---FAYLVFPNSILSVLPEG 212
S + G +LDP+ EE G AY+ I V G
Sbjct: 174 VSSIQ-GQVLLDPSTSEENCEDGSLMVAYMPSRKEITQVTMTG 215
>gi|212543511|ref|XP_002151910.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
putative [Talaromyces marneffei ATCC 18224]
gi|210066817|gb|EEA20910.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
putative [Talaromyces marneffei ATCC 18224]
Length = 283
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 75/182 (41%), Gaps = 43/182 (23%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR N+LR L S + GS+ ++
Sbjct: 15 RLDGRRWNELRLLQAQISTNPASSGSS------------------------------YLS 44
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVI----------WKPRTGQIGKPEKEYEIIL 114
G+T ++ V+GP + + +A ++V K R G + + L
Sbjct: 45 MGNTSIMCTVHGPHETSGAGSSATEAVVDVDVNIAGFAGVDRKRRAGGSDRQSTQLSTAL 104
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
K QS ++ P++T +V + V+ DG+L AINA ALVDAGIPM L +C C
Sbjct: 105 KSAFQSHLHTSLYPHSTITVQVSVLSSDGSLFAAAINACTLALVDAGIPMPGL---LCGC 161
Query: 175 SA 176
+A
Sbjct: 162 TA 163
>gi|195107981|ref|XP_001998571.1| GI24046 [Drosophila mojavensis]
gi|193915165|gb|EDW14032.1| GI24046 [Drosophila mojavensis]
Length = 239
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 96/209 (45%), Gaps = 21/209 (10%)
Query: 55 SKCYFCYWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIIL 114
S+C G T V+AAV GP +N + E + +E ++P+ G E+ E +
Sbjct: 25 SRCDGSVMYSQGATVVIAAVLGPIEVKTQNLSIEGSYLECNYRPKAGLPQVKERIREAAI 84
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
+ L+ + P S+ +Q + D G++ CA+NAAC A++ G+P+K+ A+ C
Sbjct: 85 RDVLELALLSEAYPRAKMSLQVQELEDRGSIDACALNAACLAMLIGGLPLKYSFAAVHCI 144
Query: 175 SAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAM 234
E G ILDP + E Q K F + +L LVQ T GA
Sbjct: 145 INEKGDFILDPEESETQHQKASFTFAFDSVDGDLL-----LVQ------------TKGAF 187
Query: 235 SVDDY--FHCLERGRAASAKLSDFLRRSL 261
+ + C+ R ASA++ DF R ++
Sbjct: 188 KIAQFNDIECI--CRQASAEIFDFYRSNI 214
>gi|62858329|ref|NP_001016436.1| exosome component 4 [Xenopus (Silurana) tropicalis]
gi|89273823|emb|CAJ82158.1| exosome component 4 [Xenopus (Silurana) tropicalis]
gi|111598409|gb|AAH80330.1| LOC549190 protein [Xenopus (Silurana) tropicalis]
Length = 249
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/226 (21%), Positives = 93/226 (41%), Gaps = 57/226 (25%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +LR + + +A GSA ++
Sbjct: 13 RVDGRKAGELRKIRARMGVFAQADGSA------------------------------YIE 42
Query: 65 SGDTKVLAAVYGPKA--GTKKNENPEKASIEVIWKPRTGQIGKPEK---------EYEII 113
G+TK LA VYGP G++ +++ + + T G+ ++ E +
Sbjct: 43 QGNTKALAVVYGPHEIRGSRSKMLHDRSVVNCQYSMATFSTGERKRRPHGDRKSSEMTLH 102
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
LK+T ++ + + P + + +Q++ DG +NAA A++DAGIPM+
Sbjct: 103 LKQTFEAAILTQLYPRSQIDIYVQILQADGGNYCTCVNAATLAVIDAGIPMRDY-----V 157
Query: 174 CSAESGYCILDPTKLEEQKMKGFAYLV----FPNSILSVLPEGSSL 215
C++ +G+ +E+ + +Y+ P L++LP+ +
Sbjct: 158 CASSAGF-------IEDTPLADLSYVEEAAGGPQLALALLPKSDQI 196
>gi|403214056|emb|CCK68557.1| hypothetical protein KNAG_0B01100 [Kazachstania naganishii CBS
8797]
Length = 222
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 93/214 (43%), Gaps = 23/214 (10%)
Query: 68 TKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTIN 127
T +L +V GP + E P + ++EVI +P G E E + L L SI ++
Sbjct: 22 TALLCSVTGPIEPKPRQELPTRMALEVIVRPALGVPLTREVEIQDKLNSILGSIIVVHRY 81
Query: 128 PNTTTSVIIQVVH--------DDGALLPCAINAACAALVDAGIPMKHLAV--AICCCSAE 177
P + Q++ D L+ C +NAA AL+DAGI M LA+ I
Sbjct: 82 PRQLCQITFQILESGEDPHLFDSKELVAC-VNAATLALIDAGIAMNSLAIGCVIAVLPES 140
Query: 178 SGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVD 237
G I+DPT +EQ + +S++ L +GS +V + ++ ++G +
Sbjct: 141 DGKHIIDPT--DEQLRNAISV----HSLVLQLVDGSKVV------NNVLLLDSYGDFTEK 188
Query: 238 DYFHCLERGRAASAKLSDFLRRSLQSKLPGDLSK 271
F LE G + R+ +Q ++ + K
Sbjct: 189 ILFEVLELGEKYILNKAQDFRKLIQERIEASILK 222
>gi|123464254|ref|XP_001317083.1| 3' exoribonuclease family, domain 1 containing protein [Trichomonas
vaginalis G3]
gi|121899808|gb|EAY04860.1| 3' exoribonuclease family, domain 1 containing protein [Trichomonas
vaginalis G3]
Length = 203
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 67/153 (43%), Gaps = 11/153 (7%)
Query: 63 VGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSIC 122
V G T+V+ + GPK + K +I+ P I K I+ +++
Sbjct: 32 VRVGKTEVIVNIVGPKQMVFREIETGKVNIKAKSYPENPTINK-------IVADAIENSL 84
Query: 123 ILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCI 182
P++ V + +V DDG L CA+NA ALVDAG M HL +A + + +
Sbjct: 85 KCDAYPDSNLEVSVTIVCDDGGLKACAVNATILALVDAGFEMNHL-LAASSLAVKGDILV 143
Query: 183 LDPTKLEEQKMKG---FAYLVFPNSILSVLPEG 212
DP EE+ G F Y + I+S EG
Sbjct: 144 NDPNASEEELYDGAATFVYEIDSQKIISTFFEG 176
>gi|19112052|ref|NP_595260.1| exosome subunit Rrp46 (predicted) [Schizosaccharomyces pombe 972h-]
gi|29336579|sp|O42894.1|RRP46_SCHPO RecName: Full=Exosome complex component rrp46; AltName:
Full=Ribosomal RNA-processing protein 46
gi|2956749|emb|CAA17913.1| exosome subunit Rrp46 (predicted) [Schizosaccharomyces pombe]
Length = 226
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 64/152 (42%), Gaps = 31/152 (20%)
Query: 23 ILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLAAVYGPKAGTK 82
IL R+ GS+ W QG +V+ V GP
Sbjct: 6 ILSRSDGSSEWKQG------------------------------SARVICGVNGPIDVKI 35
Query: 83 KNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDD 142
++E KA++EV+ +P +G EK + L+ L P T V IQ++ +D
Sbjct: 36 RDERLNKATVEVLVQPVSGVAETLEKMISSRIVGILEDAIFLNTYPRTLIQVSIQIIEED 95
Query: 143 GA-LLPCAINAACAALVDAGIPMKHLAVAICC 173
G L IN A AL+DAGI +K++ AI C
Sbjct: 96 GTDTLAAVINGAVLALLDAGISLKYIPCAINC 127
>gi|76155868|gb|AAX27138.2| SJCHGC06185 protein [Schistosoma japonicum]
Length = 251
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 74/178 (41%), Gaps = 43/178 (24%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR PN+LR + C GS + S G F+
Sbjct: 3 RVDGRRPNELRRVHCQ-------FGSGN-SDGIVFLH----------------------- 31
Query: 65 SGDTKVLAAVYGPKA-GTKKNENPEKASI--EVIWKPRTGQIGKPEK---------EYEI 112
G+TKV+A+V GP A TK + NP+ A+I + P G+ K ++
Sbjct: 32 QGNTKVIASVVGPHAPRTKGDGNPDGATIICQFTKPPFASTSGERRKVASNDRSANDFST 91
Query: 113 ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVA 170
++ + P + + ++V+ DG+ CA+NA AL DAGI M +L A
Sbjct: 92 AIEEIFSCVVRTEKYPMSQIDIFLEVIQSDGSEFACAVNATTLALTDAGIEMHYLVSA 149
>gi|406865017|gb|EKD18060.1| 3' exoribonuclease family protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 257
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 69/270 (25%), Positives = 110/270 (40%), Gaps = 61/270 (22%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR N+LR L A GS+ ++
Sbjct: 14 RLDGRRWNELRRLTAQMRTQAAADGSS------------------------------YLE 43
Query: 65 SGDTKVLAAVYGP---KAGTKKNENP-EKASIEVIWK--------PRTGQIGKPEK---E 109
G+TKV+ V GP KAGT + ++A+++V + G G+ +K E
Sbjct: 44 MGNTKVICTVAGPSEGKAGTGQMGGARDRATVDVTISVAGFSGVDRKRGGAGRGDKRLAE 103
Query: 110 YEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAV 169
+ + + + P+++ ++ + ++ DG+LL INA+ ALVDAGIPM+
Sbjct: 104 MQTTISTAFAQTLLTHLYPHSSIALSLHILSQDGSLLAACINASTLALVDAGIPMRGY-- 161
Query: 170 AICCCSA----------ESGYCILDPTKLEEQKMKGFAYLVFPNS-ILSVLPEGSSLVQG 218
IC C+A E +LD EEQ++ S +SVL + VQ
Sbjct: 162 -ICACTAGSTSSYSSNDERADPLLDLNAAEEQELPFLTVATVAGSDDVSVLVM-ETRVQA 219
Query: 219 EPMEHGIITSVTHGAMSVDDYFHCLERGRA 248
+E G++T G M V + + R R
Sbjct: 220 GRLE-GMLTVGVSGCMQVREILDKVVRERG 248
>gi|403418005|emb|CCM04705.1| predicted protein [Fibroporia radiculosa]
Length = 280
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 85/212 (40%), Gaps = 45/212 (21%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R+DGR +LR + S A GSA + G
Sbjct: 28 RSDGRRQYELRDITIDLSQQGTADGSALMTHGL--------------------------- 60
Query: 65 SGDTKVLAAVYGPKAGTKKNEN-PEKA--SIEVIWKP-RTGQIGKPEKEYEIIL------ 114
T+VLA V+GP+ +++ ++A ++EV P TG+ + + +L
Sbjct: 61 ---TQVLATVFGPREARVRSQTLHDRAVINVEVNVSPFSTGERRRRGRADRRVLELAATI 117
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
K T + + + P + + + V+ DG LL INA ALV AGIP+ +C
Sbjct: 118 KSTFEPVVQTNLYPRSQIDIFLHVLQQDGGLLHACINATTLALVTAGIPLLDF---VCAV 174
Query: 175 S--AESGYCILDPTKLEEQKMKGFAYLVFPNS 204
S S +LD T LEE + + P +
Sbjct: 175 SGGVHSTSPMLDLTTLEENDLPNLTVAIMPKT 206
>gi|391346094|ref|XP_003747314.1| PREDICTED: exosome complex component MTR3-like [Metaseiulus
occidentalis]
Length = 271
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 79/194 (40%), Gaps = 39/194 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +LRP ++ A GS +V
Sbjct: 34 RKDGRRDEELRPRIFESGLVSDASGSG------------------------------YVE 63
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVI--WKP------RTGQIGKPEKEYEIILKR 116
G TKV+AAV+GP+ T++ E KA + + ++P R I E+ Y L+
Sbjct: 64 QGSTKVVAAVFGPREVTRRKEFSLKAQLRCVFTFEPFATPGGRQENISLLEQRYSSWLEE 123
Query: 117 TLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSA 176
+L+ + L P + + + + +DG +L A+ A AL +GI L + + A
Sbjct: 124 SLKPVVQLRRYPKASIDIRVTCLENDGGVLAAALTACGIALATSGIETFDLVIGV-NLRA 182
Query: 177 ESGYCILDPTKLEE 190
++DP+ EE
Sbjct: 183 HGDRVLMDPSHAEE 196
>gi|388499452|gb|AFK37792.1| unknown [Lotus japonicus]
Length = 253
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 76/197 (38%), Gaps = 38/197 (19%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +Q RP ++ A GSA + F
Sbjct: 32 RPDGRGFHQCRPAFFRTGAVNAASGSA-------------YAEF---------------- 62
Query: 65 SGDTKVLAAVYGPKAGTKKNENPE------KASIEVIWKPRTGQIGKPEKEYEIILKRTL 118
G+TKV+ +V+GP+ K + S P GQ G K+Y +L + L
Sbjct: 63 -GNTKVIVSVFGPRESKKAMLYSDVGRLNCNVSYTTFATPVRGQ-GSDHKDYSAMLDKAL 120
Query: 119 QSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAES 178
IL P TT V V+ G+ LP I+ A AL DAGI M L VA S S
Sbjct: 121 GGAIILESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMMYDL-VASVSVSCLS 179
Query: 179 GYCILDPTKLEEQKMKG 195
++DP EE G
Sbjct: 180 KNLVIDPISEEENCQDG 196
>gi|326436033|gb|EGD81603.1| hypothetical protein PTSG_02318 [Salpingoeca sp. ATCC 50818]
Length = 221
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 73/153 (47%), Gaps = 9/153 (5%)
Query: 66 GDTKVLAAVYGPKAGTKKNENPEKASIE--VIWKPRTG---QIGKP---EKEYEIILKRT 117
G+TKV+AA YGP + +++ E ++ V + P +G Q K E+E +L+ +
Sbjct: 60 GNTKVVAACYGPLSTSRRQGFQETCILDCDVKFSPFSGVKHQQTKQTALERELSQLLESS 119
Query: 118 LQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAE 177
L+ ++ P + V V+ DDGA INAA AL +AGI M L A C
Sbjct: 120 LKPCVCVSKYPKSVIQVYATVLQDDGAAFSAVINAASMALANAGIEMFDLLAAASVCFDT 179
Query: 178 SGYCILDPTKLEE-QKMKGFAYLVFPNSILSVL 209
SG PT+ EE K+ + + P + L
Sbjct: 180 SGGLHPHPTRDEEAAKVHAYNPMRLPKGLFVSL 212
>gi|146417428|ref|XP_001484683.1| hypothetical protein PGUG_02412 [Meyerozyma guilliermondii ATCC
6260]
Length = 242
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 83/210 (39%), Gaps = 40/210 (19%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR N+LR C + H N +S +V
Sbjct: 13 RVDGRRWNELRRFECKINT-----------------------HPNSLTGSS------YVE 43
Query: 65 SGDTKVLAAVYGP-KAGTKKNENPEKASIEV---------IWKPRTGQIGKPEKEYEIIL 114
G+TKV+ V GP + T+ + +A+IEV I + + + K E + +
Sbjct: 44 QGNTKVICMVEGPLEPETRSQVDVSRATIEVNIAVASFSTIERKKRLKNEKRIIELKATM 103
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
+RT + I + P T V + V+ DG +L INA AL+DAGI M + VA
Sbjct: 104 ERTFEQSVICKLYPRTVIKVNLHVLAQDGGMLATMINATTLALIDAGIAM-YDYVAAVAA 162
Query: 175 SAESGYCILDPTKLEEQKMKGFAYLVFPNS 204
+ +LD LEE M V S
Sbjct: 163 GLHNETPLLDLNTLEENDMSHLTLGVIGKS 192
>gi|322696851|gb|EFY88637.1| hypothetical protein MAC_05255 [Metarhizium acridum CQMa 102]
Length = 271
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 87/211 (41%), Gaps = 51/211 (24%)
Query: 70 VLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGK-----------------PEKEYEI 112
V AAV GP +++ENP +A I+V+ +P G GK E++ E
Sbjct: 30 VTAAVNGPIEAPRRDENPFEALIDVVVRPAAGVGGKDRPFHLNLQSLIIWPGTAERQLES 89
Query: 113 ILKRTLQSICILTINPNTTTSVIIQVV---------------HDDGALLPCAINAACAAL 157
IL+ L+ + + P V +Q++ + A++P +AA L
Sbjct: 90 ILQAALRQLIPIRNFPRCMIQVTLQIMEAPENAYQNTKLLQAQSNLAIIPALFHAAILGL 149
Query: 158 VDAGIPMKHLAVAICCC-SAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLV 216
+ A +P+K +A A A SG I+DP+ E + + L F + +L E S
Sbjct: 150 LTAAVPLKTIATATTLAIPAGSGALIIDPSPEESAQARSLHALAFTSHDELLLAESS--- 206
Query: 217 QGEPMEHGIITSVTHGAMSVDDYFHCLERGR 247
G+ S++D+ LE G+
Sbjct: 207 ---------------GSFSIEDWDRVLETGQ 222
>gi|284794093|pdb|3KRN|A Chain A, Crystal Structure Of C. Elegans Cell-Death-Related
Nuclease 5(Crn-5)
gi|284794094|pdb|3KRN|B Chain B, Crystal Structure Of C. Elegans Cell-Death-Related
Nuclease 5(Crn-5)
Length = 222
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 82/186 (44%), Gaps = 39/186 (20%)
Query: 13 QLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLA 72
+LR + C S L A GSA +SQG + C + G GD
Sbjct: 4 RLREMRCELSFLKNADGSACFSQG------------------ATCIWASCSGPGD----- 40
Query: 73 AVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEI---ILKRTLQSICILTINPN 129
V+ KA + E ++++ ++ G + ++ + I+ TL + L + P+
Sbjct: 41 -VHASKA------SDEAMTLDISYRANCG-----DNKFNVLNNIIHSTLSNAINLELFPH 88
Query: 130 TTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLE 189
TT SV + + DDG++ AIN AC AL+D G+P + + + + I+DPT +
Sbjct: 89 TTISVTVHGIQDDGSMGAVAINGACFALLDNGMPFETVFCGVLIVRVKDEL-IIDPTAKQ 147
Query: 190 EQKMKG 195
E G
Sbjct: 148 EAASTG 153
>gi|401625679|gb|EJS43677.1| rrp46p [Saccharomyces arboricola H-6]
Length = 223
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 87/209 (41%), Gaps = 20/209 (9%)
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICIL 124
S DTK++ +V GP + E P + ++E+I +P G EK E L+ L I
Sbjct: 21 SQDTKIICSVTGPIEPKARQELPTQLALEIIVRPAKGVATTREKLLEDKLRAVLTPIITR 80
Query: 125 TINPNTTTSVIIQVV---HDDGAL----LPCAINAACAALVDAGIPMKHLAVAI-CCCSA 176
P + Q++ D+ L C INAA LVDAGI M + +I
Sbjct: 81 YCYPRQLCQITCQILESGEDEPEFSLRELSCCINAAFLGLVDAGIAMNSMCASIPIAIMK 140
Query: 177 ESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSV 236
S I++PT E+ K+ LSV G + ++ ++G +
Sbjct: 141 NSNEIIINPTA-EQLKIS-----------LSVHTLALEFTDGGKVVKNVLLLDSNGDFNE 188
Query: 237 DDYFHCLERGRAASAKLSDFLRRSLQSKL 265
D F LE G +L LR+ +Q ++
Sbjct: 189 DQLFKVLESGEQKCQELVKNLRKIIQDEI 217
>gi|126136733|ref|XP_001384890.1| Exosome complex exonuclease RRP46 (Ribosomal RNA processing protein
46) [Scheffersomyces stipitis CBS 6054]
gi|126092112|gb|ABN66861.1| Exosome complex exonuclease RRP46 (Ribosomal RNA processing protein
46) [Scheffersomyces stipitis CBS 6054]
Length = 226
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 65/136 (47%), Gaps = 13/136 (9%)
Query: 66 GDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILT 125
G TKV+A+V GP + E P +AS+E++ +P G EK E L+ LQSI +
Sbjct: 21 GSTKVIASVTGPIEPKARQELPNQASLEILIRPAVGLATTREKLLEDKLRSLLQSIIVRF 80
Query: 126 INPNTTTSVIIQVVHDDGAL------------LPCAINAACAALVDAGIPMKHLAVAICC 173
P V++Q + D L AIN AL+DAGI +K V++
Sbjct: 81 KYPRQLIQVVVQFLISDSKRTETDLVDYTSNDLNAAINCCYYALIDAGIALKASFVSL-S 139
Query: 174 CSAESGYCILDPTKLE 189
+ ++G ++PT E
Sbjct: 140 IAVKNGNLTVNPTVYE 155
>gi|17531759|ref|NP_496284.1| Protein CRN-5 [Caenorhabditis elegans]
gi|3874232|emb|CAA90109.1| Protein CRN-5 [Caenorhabditis elegans]
gi|31747259|gb|AAP57301.1| cell death-related nuclease 5 [Caenorhabditis elegans]
Length = 214
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 82/186 (44%), Gaps = 39/186 (20%)
Query: 13 QLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLA 72
+LR + C S L A GSA +SQG + C + G GD
Sbjct: 4 RLREMRCELSFLKNADGSACFSQG------------------ATCIWASCSGPGD----- 40
Query: 73 AVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEI---ILKRTLQSICILTINPN 129
V+ KA + E ++++ ++ G + ++ + I+ TL + L + P+
Sbjct: 41 -VHASKA------SDEAMTLDISYRANCG-----DNKFNVLNNIIHSTLSNAINLELFPH 88
Query: 130 TTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLE 189
TT SV + + DDG++ AIN AC AL+D G+P + + + + I+DPT +
Sbjct: 89 TTISVTVHGIQDDGSMGAVAINGACFALLDNGMPFETVFCGVLIVRVKDEL-IIDPTAKQ 147
Query: 190 EQKMKG 195
E G
Sbjct: 148 EAASTG 153
>gi|384245391|gb|EIE18885.1| ribosomal protein S5 domain 2-like protein [Coccomyxa
subellipsoidea C-169]
Length = 195
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 89/204 (43%), Gaps = 26/204 (12%)
Query: 66 GDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILT 125
G+TKV+A VYGP+ +K E S E R E+E + L+ L++ L
Sbjct: 18 GNTKVIAGVYGPREAERK----EVFSTE----GRLQCDNDEERELSVQLQTALEAAVRLQ 69
Query: 126 INPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDP 185
P + V+ GA L I AA AL DAGI M+ + V+ C S G+ +LDP
Sbjct: 70 TFPKANVDIYCLVLESAGADLAVCICAASLALADAGIEMEDM-VSACSVSRVDGHLLLDP 128
Query: 186 TKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLER 245
T E + G A +L+++P +++ Q V G S L+
Sbjct: 129 TIDEAYREDGSA-------LLAMMPSANAVSQ----------VVLTGQWSNAQASEVLQL 171
Query: 246 GRAASAKLSDFLRRSLQSKLPGDL 269
A++ ++R+S++ G +
Sbjct: 172 CMGGCAQIDAYMRQSIKEAAAGQV 195
>gi|393241477|gb|EJD48999.1| exosome component 4, partial [Auricularia delicata TFB-10046 SS5]
Length = 268
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 84/212 (39%), Gaps = 45/212 (21%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R+DGR ++LR L + A GSA S G
Sbjct: 12 RSDGRRQHELRSLGMQLATQGAADGSALVSHGL--------------------------- 44
Query: 65 SGDTKVLAAVYGPKAGTKKNEN-PEKASIEV--IWKP-RTGQIGKPEK------EYEIIL 114
T LA V+GP+ G ++ ++A I+V I P G+ K K E +
Sbjct: 45 ---TTALAVVHGPREGRLRSLTLHDRAVIDVTVIVAPFSQGERRKRTKGDRRTQELAAAV 101
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
K T + + P + + I V+H DG +L INA AL++AG+PM +C
Sbjct: 102 KATFEPAVQTHLYPRSQIDICIHVLHQDGGVLQACINATTLALMNAGVPMYDY---VCAV 158
Query: 175 SAE--SGYCILDPTKLEEQKMKGFAYLVFPNS 204
S S +LD T LEE + V P S
Sbjct: 159 STGVFSTSALLDLTSLEETDVPHLTVGVLPRS 190
>gi|358400730|gb|EHK50056.1| hypothetical protein TRIATDRAFT_297398 [Trichoderma atroviride IMI
206040]
Length = 247
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 72/160 (45%), Gaps = 21/160 (13%)
Query: 59 FCYWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTL 118
F Y G V AAV GP +++ENP +A ++V +P G G E++ E IL+ L
Sbjct: 20 FAY----GGYTVTAAVNGPVEAQRRDENPFEALVDVNVRPAAGVGGTGERQLEAILQPAL 75
Query: 119 QSICILTINPNTTTSVIIQVVHD---------------DGALLPCAINAACAALVDAGIP 163
+ + + P V +QV+ + ++P ++AA L+ A +P
Sbjct: 76 RHLIPVRNFPRCVIQVTLQVMETPENAYVNSKVMQPRLNLGIIPALLHAAILGLLTAAVP 135
Query: 164 MKHLAVAICCC--SAESGYCILDPTKLEEQKMKGFAYLVF 201
MK +A A C +A+ +DPT E + + L F
Sbjct: 136 MKTVASATCLAITNADGSSVKVDPTPAEIDQARSVHVLGF 175
>gi|350423078|ref|XP_003493378.1| PREDICTED: exosome complex component MTR3-like [Bombus impatiens]
Length = 273
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 87/195 (44%), Gaps = 39/195 (20%)
Query: 4 DRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWV 63
+R+D R N++R + I+ +A GSA ++
Sbjct: 36 ERSDKRTNNEMRKIFLKTGIVSQAKGSA------------------------------YI 65
Query: 64 GSGDTKVLAAVYGPKAGTKKNENPEKASI--EVIWKP------RTGQIGKPEKEYEIILK 115
G+TKV+ +V+ P+ + KN + I E + P + Q EK+Y +IL+
Sbjct: 66 ELGNTKVVCSVFDPREVSNKNGYCAQGEIYCEFKFAPFSCQKRKIHQQNAEEKQYSLILQ 125
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
R L+ L PN V + V+ + G+ L AI AA AL +AG+PM L A
Sbjct: 126 RALEPAVCLHEFPNFQVDVYVMVLDNAGSSLAAAIMAASTALANAGVPMFGLVTASTIGI 185
Query: 176 AESGYCILDPTKLEE 190
++ Y ++DPT +EE
Sbjct: 186 YDNHY-LMDPTDIEE 199
>gi|299470099|emb|CBN78128.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 270
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 90/217 (41%), Gaps = 52/217 (23%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P +R + ++ A GSA + FN
Sbjct: 43 REDGRAPYDMRQVYMDVGVVAHATGSA-------------YVEFN--------------- 74
Query: 65 SGDTKVLAAVYGPKAGTKKNEN-PEKASIE--VIWKP-------RTGQIGKPEKEYEI-- 112
TKV+ AVYGP A T + E+ ++ + P R + GK + E E+
Sbjct: 75 --HTKVICAVYGPHAQTGGDSAFSEEGQLQCDFSYAPFAMPGGRRETRGGKKDDERELST 132
Query: 113 ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAIC 172
+L++TL+S + + V + V+ DG L A A AL DAGI + L A
Sbjct: 133 LLRQTLESSIQVHRLTKSVVGVHVMVLQADGGELAVATTCASMALADAGIELYDLVTA-- 190
Query: 173 CCSAESGYC----ILDPTKLEEQKMKGFAYL-VFPNS 204
CS GYC +LDPTK EE+ G + + P S
Sbjct: 191 -CSV--GYCGTQMVLDPTKEEEKSGAGVMTIALMPGS 224
>gi|118487722|gb|ABK95685.1| unknown [Populus trichocarpa]
Length = 257
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 93/232 (40%), Gaps = 49/232 (21%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR+ Q RP ++ A GSA + F
Sbjct: 35 RPDGRDFQQCRPAFFRTGAVNSAAGSA-------------YAEF---------------- 65
Query: 65 SGDTKVLAAVYGPKAGTKKNENPE------KASIEVIWKPRTGQIGKPEKEYEIILKRTL 118
G+TKV+ +V+GP+ K + S P G +G KE+ +L + L
Sbjct: 66 -GNTKVIVSVFGPRESKKAMVYSDVGRLNCNVSCTTFATPARG-LGSDNKEFSSMLHKAL 123
Query: 119 QSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHL--AVAICCCSA 176
+ +L P TT V V+ G+ LP I+ A AL DAGI M L V++ C
Sbjct: 124 EGAIMLETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMMYDLVAGVSVSCLGR 183
Query: 177 ESGYCILDPTKLEEQKMKGFAYLV------FPNSILSVLPEGSSLVQGEPME 222
I+DP LEE+ + + ++ + + LS+ E S+ E M+
Sbjct: 184 N---LIIDPI-LEEESFQDGSLMITCMPSRYEVTQLSITGEWSTAKLNEAMQ 231
>gi|156937005|ref|YP_001434801.1| ribosomal RNA-processing protein RRP41/SKI6 [Ignicoccus hospitalis
KIN4/I]
gi|156565989|gb|ABU81394.1| ribosomal RNA-processing protein RRP41/SKI6 [Ignicoccus hospitalis
KIN4/I]
Length = 241
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 83/195 (42%), Gaps = 40/195 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P LRPL +L+ A GSA W+
Sbjct: 15 RHDGRGPADLRPLEMKVGVLYNADGSA------------------------------WLR 44
Query: 65 SGDTKVLAAVYGPKAGTKKNEN-PEKASIEVIW--------KPRTGQIGKPEKEYEIILK 115
G T+V+AAVYGP+ + P++A I + + + + E E +++
Sbjct: 45 IGGTEVVAAVYGPREPPMRGMVLPDRAVIRCRYHMAPFSTDERKNPAPSRREIELSKVIR 104
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
L++ + + P T V I+V+ DG A+ AA AL DAGIPMK L +
Sbjct: 105 EALEATILTHLFPRTIIDVFIEVIRADGGTRTAALTAASLALADAGIPMKGLVAGVAVGK 164
Query: 176 AESGYCILDPTKLEE 190
+ G +LD +LE+
Sbjct: 165 VQ-GTLVLDIDELED 178
>gi|322695534|gb|EFY87340.1| exosome complex exonuclease RRP41 [Metarhizium acridum CQMa 102]
Length = 291
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 85/204 (41%), Gaps = 16/204 (7%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR N+LR L A GS+ + G + +
Sbjct: 14 RVDGRRWNELRRLHAQIRTQDAADGSSYFEMGHTKVMCVVTGPSEQQQAQVQAQRRGAQA 73
Query: 65 SGD------TKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQ-IGKPEKEYEIILKRT 117
SG V+ A + K+ N ++ E+ + T + G+ +E EI + +
Sbjct: 74 SGRDAASIIVNVVIAGFSSVDRKKRGRNDKEGGREIEHRALTWRGYGRRTQEIEITIAKA 133
Query: 118 LQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAE 177
L S + P+++ +V + V+ DG+LL INAA A++DAGIPM +A C +
Sbjct: 134 LSSTVHTHLFPHSSITVSLHVLSQDGSLLAALINAATLAVIDAGIPMTDY-IAACTAGST 192
Query: 178 SGYC--------ILDPTKLEEQKM 193
S Y +LD EEQ++
Sbjct: 193 SSYAAGDDSADPLLDLNNQEEQEL 216
>gi|190346269|gb|EDK38314.2| hypothetical protein PGUG_02412 [Meyerozyma guilliermondii ATCC
6260]
Length = 242
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 83/210 (39%), Gaps = 40/210 (19%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR N+LR C + H ++S + V
Sbjct: 13 RVDGRRWNELRRFECKIN----THPNSSTGSSY-------------------------VE 43
Query: 65 SGDTKVLAAVYGP-KAGTKKNENPEKASIEV---------IWKPRTGQIGKPEKEYEIIL 114
G+TKV+ V GP + T+ + +A+IEV I + + + K E + +
Sbjct: 44 QGNTKVICMVEGPSEPETRSQVDVSRATIEVNIAVASFSTIERKKRLKNEKRIIELKATM 103
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
+RT + I + P T V + V+ DG +L INA AL+DAGI M + VA
Sbjct: 104 ERTFEQSVICKLYPRTVIKVNLHVLAQDGGMLATMINATTLALIDAGIAM-YDYVAAVAA 162
Query: 175 SAESGYCILDPTKLEEQKMKGFAYLVFPNS 204
+ +LD LEE M V S
Sbjct: 163 GLHNETPLLDLNTLEENDMSHLTLGVIGKS 192
>gi|395323371|gb|EJF55845.1| hypothetical protein DICSQDRAFT_150740 [Dichomitus squalens
LYAD-421 SS1]
Length = 264
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 85/210 (40%), Gaps = 41/210 (19%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R+DGR +LR + + A GSA + G
Sbjct: 14 RSDGRKQYELRDITIDLTQQGTADGSAQLTHGL--------------------------- 46
Query: 65 SGDTKVLAAVYGPKAGTKKNEN-PEKA--SIEVIWKP-RTGQIGKPEKEYEIILK----- 115
T+VL V+GP+ +++ ++A ++E+ P TG+ K + IL+
Sbjct: 47 ---TQVLVTVFGPREAKMRSQTLHDRAVLNVEMSVAPFSTGERRKRSRADRRILEMAAMI 103
Query: 116 -RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
T + + + P + + + V+ DG+LLP INA ALV AG+P+ A+
Sbjct: 104 ASTFEPVVQTNLYPRSQIDIYVHVLQQDGSLLPACINATTLALVTAGVPLLDFVCAV-TG 162
Query: 175 SAESGYCILDPTKLEEQKMKGFAYLVFPNS 204
S +LD T LEE + V P +
Sbjct: 163 GVHSTSPLLDLTTLEENDVPHMTVAVMPRT 192
>gi|407919986|gb|EKG13205.1| Exoribonuclease phosphorolytic domain 1 [Macrophomina phaseolina
MS6]
Length = 256
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 87/211 (41%), Gaps = 53/211 (25%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR N+LR L S A GS+ ++
Sbjct: 14 RLDGRRWNELRRLQAQISTQAAADGSS------------------------------YLE 43
Query: 65 SGDTKVLAAVYGPKAGTKKN-----ENPEKASIEV---------IWKPRTGQIGKPEKEY 110
G+TKV+ V GP G ++ + +A IEV I + R G+ K E
Sbjct: 44 MGNTKVMCTVTGPYEGRRQGGAAGAQRDGEAKIEVEIGFAGFSGIERKRRGRGDKRTAEM 103
Query: 111 EIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVA 170
+ L + S P++T S+ + ++ DG+LL +NAA ALVDAGIPM VA
Sbjct: 104 QHTLVQAFASTLHTQRYPHSTISISLHILSQDGSLLAACLNAATLALVDAGIPMSDYLVA 163
Query: 171 ICCCSAESGYC--------ILDPTKLEEQKM 193
C + + Y +LD LEEQ++
Sbjct: 164 -CTAGSTASYSANDEQADPLLDLNNLEEQEL 193
>gi|407409247|gb|EKF32229.1| ribosomal RNA processing protein 41B, putative,3' exoribonuclease,
putative [Trypanosoma cruzi marinkellei]
Length = 280
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 80/197 (40%), Gaps = 47/197 (23%)
Query: 35 QGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEV 94
+GFR ++ L F W G T V+AAV GP A + E+ K ++V
Sbjct: 11 RGFREMRGKELRTSELTQFDGSA----WYSQGLTTVVAAVNGPVAA--RQEDYRKCGVQV 64
Query: 95 -----IWKPRTGQIGK------------PEKEYEIILKRTLQSICILTINPNTTTSVIIQ 137
+ PR G + + E E+ L ++Q++ L P V I
Sbjct: 65 YVNRAVRIPRAGGTDRICMEEQRVEQHRMDAELEMFLTTSIQAVVRLDQFPRCVLEVHIT 124
Query: 138 VVHDDGALLPCAINAACAALVDAGIPMKHL--AVAICCCSAESGYCI------------- 182
++ +DGALL A NA AL+DAG+P + AV+I + E G +
Sbjct: 125 ILAEDGALLSVATNALMCALLDAGVPCRTTVAAVSIVAFAPEDGSLVTAPTTKTKTAAPE 184
Query: 183 ---------LDPTKLEE 190
LDPT +EE
Sbjct: 185 ASSFSLALLLDPTGVEE 201
>gi|91087143|ref|XP_975288.1| PREDICTED: similar to exosomal 3-5 exoribonuclease complex subunit
Rrp41-like protein [Tribolium castaneum]
Length = 282
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 85/197 (43%), Gaps = 40/197 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
RADGR + R + ++ +A GSA ++
Sbjct: 42 RADGRTSTEHRKIFLKTGVVSQAKGSA------------------------------YIE 71
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASI--EVIWKP------RTGQIGKPEKEYEIILKR 116
TKV+ +V+ P+ K + K I E + P R Q E+++ I+K+
Sbjct: 72 LDQTKVIVSVFDPREIPNKTDYSSKGEIYCEFKFAPFSCHKRRLHQQDAEEQQFSAIMKQ 131
Query: 117 TLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSA 176
L+S PN + V+H+DGA L AI AA AL AGIPM L ++ +
Sbjct: 132 ALESAVFRHEFPNFQVDIYAMVLHNDGAALSAAITAAGVALAHAGIPMYDLITSV-TLAV 190
Query: 177 ESGYCILDPTKLEEQKM 193
+ + ++DPT LEE+++
Sbjct: 191 QGNHLLVDPT-LEEERL 206
>gi|302829841|ref|XP_002946487.1| hypothetical protein VOLCADRAFT_108889 [Volvox carteri f.
nagariensis]
gi|300268233|gb|EFJ52414.1| hypothetical protein VOLCADRAFT_108889 [Volvox carteri f.
nagariensis]
Length = 245
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 84/190 (44%), Gaps = 41/190 (21%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P +LR + C +L A GSA + G
Sbjct: 10 RLDGRRPRELRRINCQLDVLSSADGSAIFEMG---------------------------- 41
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEV----------IWKPRTGQIGKPEKEYEIIL 114
+TKVLAAV+GP A TK+ + E A+I V + R G+ + E +++
Sbjct: 42 --NTKVLAAVFGPHAVTKRADLREDAAIVVCEYSMAAFSTGERRRRGKGDRRSTELSMVI 99
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
+ TL+ + + P + V +QV+ DG AINAA AL AG+P++ L VA C
Sbjct: 100 RNTLEQAILRELMPRSQIDVYVQVLQADGGTRCAAINAAVLALAAAGVPLRDL-VASCAA 158
Query: 175 SAESGYCILD 184
G +LD
Sbjct: 159 GYLDGTPLLD 168
>gi|294659898|ref|XP_462331.2| DEHA2G18194p [Debaryomyces hansenii CBS767]
gi|199434319|emb|CAG90837.2| DEHA2G18194p [Debaryomyces hansenii CBS767]
Length = 245
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 79/199 (39%), Gaps = 40/199 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR N+LR C R + S S G +I+
Sbjct: 13 RIDGRRWNELRRFEC------RINTHPSSSDGSSYIE----------------------- 43
Query: 65 SGDTKVLAAVYGP-KAGTKKNENPEKASIEV---------IWKPRTGQIGKPEKEYEIIL 114
G+TK++ V GP + + N KASIE+ I + + + K E + L
Sbjct: 44 QGNTKIICMVQGPMEPSLRSQTNSSKASIEINLSVANFSTIERKKRLKNEKRLIELKTTL 103
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
+RT + I + P T + + V+ DG LL NA AL+DAGI M AI
Sbjct: 104 ERTFEQSVICKLYPRTVIQINLHVLCQDGGLLAGMTNAITLALIDAGIAMYDYVSAINAG 163
Query: 175 SAESGYCILDPTKLEEQKM 193
+ +LD LEE M
Sbjct: 164 LYDQ-TPLLDLNTLEENDM 181
>gi|224106782|ref|XP_002314284.1| predicted protein [Populus trichocarpa]
gi|222850692|gb|EEE88239.1| predicted protein [Populus trichocarpa]
Length = 257
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 93/232 (40%), Gaps = 49/232 (21%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +Q RP ++ A GSA + F
Sbjct: 35 RPDGRGFHQCRPAFFRTGAVNSAAGSA-------------YAEF---------------- 65
Query: 65 SGDTKVLAAVYGPKAGTKKNENPE------KASIEVIWKPRTGQIGKPEKEYEIILKRTL 118
G+TKV+ +V+GP+ K + S P G +G KE+ +L + L
Sbjct: 66 -GNTKVIVSVFGPRESKKAMVYSDVGRLNCNVSCTTFATPARG-LGSDNKEFSSMLHKAL 123
Query: 119 QSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHL--AVAICCCSA 176
+ +L P TT V V+ G+ LP I+ A AL DAGI M L V++ C
Sbjct: 124 EGAIMLETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMMYDLVAGVSVSCLGR 183
Query: 177 ESGYCILDPTKLEEQKMKGFAYLV------FPNSILSVLPEGSSLVQGEPME 222
I+DP LEE+ + + ++ + + LS+ E S+ E M+
Sbjct: 184 N---LIIDPI-LEEESFQDGSLMITCMPSRYEVTQLSITGEWSTAKLNEAMQ 231
>gi|308801625|ref|XP_003078126.1| Exosomal 3'-5' exoribonuclease complex, subunit Rrp41 and related
exoribonucleases (ISS) [Ostreococcus tauri]
gi|116056577|emb|CAL52866.1| Exosomal 3'-5' exoribonuclease complex, subunit Rrp41 and related
exoribonucleases (ISS) [Ostreococcus tauri]
Length = 378
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 60/134 (44%), Gaps = 10/134 (7%)
Query: 68 TKVLAAVYGPKAGTKKNENPEKASIEVI-----WKPRTGQIGKPEKEYEIILKRTLQSIC 122
T V+AAV+GP E ++ I+V W R Q + E L+ ++
Sbjct: 162 TIVVAAVHGPLRIAPWREAHDRGVIDVELSAPGWMSRDDQ-----RACEGRLRGAIERCV 216
Query: 123 ILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCI 182
L P + +VV DDG +NA C AL+DA +PM+ L A C G +
Sbjct: 217 ELRDFPRFGLRISARVVSDDGNAEAACVNAVCCALIDANVPMRGLICANACALTREGSMV 276
Query: 183 LDPTKLEEQKMKGF 196
+DPTK EE + +
Sbjct: 277 IDPTKREETEARAV 290
>gi|341888955|gb|EGT44890.1| hypothetical protein CAEBREN_12233 [Caenorhabditis brenneri]
Length = 214
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 82/186 (44%), Gaps = 39/186 (20%)
Query: 13 QLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLA 72
++R + C S L A GSA +SQG S C + G GD
Sbjct: 4 RIREMRCELSFLKNADGSACFSQG------------------STCVWASCSGPGD----- 40
Query: 73 AVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEI---ILKRTLQSICILTINPN 129
V+ +A N E ++++ ++ G + ++ + I++ T+ L + P+
Sbjct: 41 -VHASRA------NEEAMTLDISYRANCG-----DNKFNVLNNIIQSTMSKAINLELFPH 88
Query: 130 TTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLE 189
T +V I + DDG++ AIN+AC AL+D G+P + + I + I+DPT +
Sbjct: 89 TAITVTIHGIQDDGSMGAAAINSACFALLDNGMPFETVFCGIQIVRVKDEL-IIDPTAKQ 147
Query: 190 EQKMKG 195
E G
Sbjct: 148 EAASTG 153
>gi|255711166|ref|XP_002551866.1| KLTH0B01738p [Lachancea thermotolerans]
gi|238933244|emb|CAR21428.1| KLTH0B01738p [Lachancea thermotolerans CBS 6340]
Length = 245
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 82/200 (41%), Gaps = 41/200 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR N+LR L CS + H +AS G +++
Sbjct: 13 RVDGRRWNELRRLECSIN----THANAS--DGSSYLE----------------------- 43
Query: 65 SGDTKVLAAVYGPKAGTKKNE-NPEKASIEVIWK-------PRTGQIGKPEK---EYEII 113
G+ KV+ V GP+ +++ N KA+I V R+ K E+ E +
Sbjct: 44 QGNNKVITLVTGPQEPKLRSQMNVTKATISVALNITRFSKIERSKSSHKNERRVLEMQTA 103
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
L RT + +L + P T + I V+ DG L+ IN AL+DAGI M +
Sbjct: 104 LVRTFEKNVMLHLYPRTQIEIQIHVLQQDGGLMSSLINGITLALIDAGIAMYDYISGVSI 163
Query: 174 CSAESGYCILDPTKLEEQKM 193
++ +LD +EE M
Sbjct: 164 GLYDT-TPLLDLNSVEENAM 182
>gi|225719528|gb|ACO15610.1| Exosome complex exonuclease MTR3 [Caligus clemensi]
Length = 274
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 79/200 (39%), Gaps = 44/200 (22%)
Query: 5 RADGR--NPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYW 62
R DG + +RPL C +L + GSA +
Sbjct: 40 RPDGERDKDSSVRPLFCEVGVLTQCKGSA------------------------------Y 69
Query: 63 VGSGDTKVLAAVYGPKAGTKKNENPEKA---SIEVIWKP--------RTGQIGKPEKEYE 111
+ G TKV+A+V+GP+ KK + S+E P + +K
Sbjct: 70 IERGRTKVIASVFGPREVNKKLDFSSTTGILSVEYCETPFSSSSSNRSSKSPSNEDKNIS 129
Query: 112 IILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAI 171
+ L +T +S L + P + + I V+ +DG+ +P AI A AL DA I + L +
Sbjct: 130 LFLAQTFRSTVCLHLYPKSRIDIFITVLENDGSAIPTAITAGALALSDASINLFDLVIG- 188
Query: 172 CCCSAESGYCILDPTKLEEQ 191
G ++DP K EE+
Sbjct: 189 ASVKMSLGKALIDPCKAEEE 208
>gi|66824695|ref|XP_645702.1| hypothetical protein DDB_G0271396 [Dictyostelium discoideum AX4]
gi|60473889|gb|EAL71828.1| hypothetical protein DDB_G0271396 [Dictyostelium discoideum AX4]
Length = 217
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 91/209 (43%), Gaps = 26/209 (12%)
Query: 62 WVGSGDTKVLAAVYGPKAGTKKNENPEKASIE-----VIWKPRTGQI----GKPEKEYEI 112
+V +TKVL ++GP+A T+K E E A + + T +I EK+ +
Sbjct: 14 YVEMENTKVLCTIHGPRA-TQKTELFETAKLNCELKYTTFSSTTEKIDYVENSKEKDLSL 72
Query: 113 ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAIC 172
++ +++ L P T + I V++DDG +L +I AA AL DAG+ M + +
Sbjct: 73 LISQSIIGSIRLEKYPKTAIDIYILVLNDDGNVLVASITAATMALADAGVEMFDMVSSCS 132
Query: 173 CCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHG 232
+ ++DPT LEE P+S + LV P + I + G
Sbjct: 133 VSCTKDNRTLIDPTTLEE---------TIPSS-------STVLVAKMPSLNEITQIIQTG 176
Query: 233 AMSVDDYFHCLERGRAASAKLSDFLRRSL 261
+ + C++ K+ ++++L
Sbjct: 177 ELQYTNVLECVDLCIDGCDKIYSIMKQNL 205
>gi|302882007|ref|XP_003039914.1| hypothetical protein NECHADRAFT_96576 [Nectria haematococca mpVI
77-13-4]
gi|256720781|gb|EEU34201.1| hypothetical protein NECHADRAFT_96576 [Nectria haematococca mpVI
77-13-4]
Length = 268
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 82/211 (38%), Gaps = 53/211 (25%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR N+LR L A GS+ ++
Sbjct: 14 RVDGRRWNELRRLNAQIRTQDAADGSS------------------------------YLE 43
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEV--------------IWKPRTGQIGKPEKEY 110
G TKV+ V GP ++ + A +V + + + G+ K +E
Sbjct: 44 MGHTKVMCVVTGPSEQGQQQRRVQTAQRDVAAINVNVVTAGFSSVDRKKRGRNDKRTQEI 103
Query: 111 EIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVA 170
E+ + S + P+++ ++ + V+ DG+LL +NA AL+DAGIPM +A
Sbjct: 104 EVTIANAFASNLHTHLFPHSSITISLHVLSQDGSLLAALLNATTLALIDAGIPMTDY-IA 162
Query: 171 ICCCSAESGYC--------ILDPTKLEEQKM 193
C + S Y +LD EEQ++
Sbjct: 163 ACTAGSTSTYAAGDDSADPLLDLNNQEEQEL 193
>gi|42567185|ref|NP_194479.2| 3'-5'-exoribonuclease family protein [Arabidopsis thaliana]
gi|124300968|gb|ABN04736.1| At4g27490 [Arabidopsis thaliana]
gi|124301080|gb|ABN04792.1| At4g27490 [Arabidopsis thaliana]
gi|332659949|gb|AEE85349.1| 3'-5'-exoribonuclease family protein [Arabidopsis thaliana]
Length = 256
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 101/270 (37%), Gaps = 59/270 (21%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFC 60
++ R DGR +Q RP + A GSA + F
Sbjct: 30 LDWSRPDGRGFHQCRPALLQTGAVSSASGSA-------------YAEF------------ 64
Query: 61 YWVGSGDTKVLAAVYGPKAGTKKNENPE------KASIEVIWKPRTGQIGKPEKEYEIIL 114
G+TKV+ +V+GP+ K + S P GQ G KEY +L
Sbjct: 65 -----GNTKVIVSVFGPRESKKAMVYSDVGRLNCNVSYTNFASPTLGQ-GTDHKEYSSML 118
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHL--AVAIC 172
+ L+ + ++ P TT V V+ G+ L I+ A AL DAGI M L AV++
Sbjct: 119 HKALEGVIMMETFPKTTVDVFALVLESGGSDLSVLISCASLALADAGIMMYDLITAVSVS 178
Query: 173 CCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHG 232
C ++DP EE +GS ++ P + I G
Sbjct: 179 CIGKS---LMIDPVTEEEG-----------------CEDGSFMMTCMPSRYEITQLTITG 218
Query: 233 AMSVDDYFHCLERGRAASAKLSDFLRRSLQ 262
+ + ++ AS+KL + +R L+
Sbjct: 219 EWTTPNINEAMQLCLDASSKLGEIMRDCLK 248
>gi|440300726|gb|ELP93173.1| exosome complex exonuclease RRP46, putative [Entamoeba invadens
IP1]
Length = 226
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 1/114 (0%)
Query: 60 CYWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEV-IWKPRTGQIGKPEKEYEIILKRTL 118
CY G T V+A V P+ K E P A ++V ++ Q GK + E E ++ +
Sbjct: 33 CYMFHQGKTCVIAGVNAPRNTLKSKEQPNTAYVDVQFYEKVAAQQGKRKTELEEFVRSGV 92
Query: 119 QSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAIC 172
+ + P +V IQ V DDG + +NA +L+ +G+ MK + V +C
Sbjct: 93 EWAVLCEKYPRGLINVCIQTVKDDGCVESVGMNATMTSLLYSGVDMKSIVVGMC 146
>gi|254168384|ref|ZP_04875229.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469]
gi|197622665|gb|EDY35235.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469]
Length = 208
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 83/199 (41%), Gaps = 25/199 (12%)
Query: 59 FCYWVGSGDTKVLAAVYGP-KAGTKKNENPEKASIEVIW---------KPRTGQIGKPEK 108
F W G K++AAVYGP +A K + ++A + + + R G P++
Sbjct: 6 FIEW---GGNKIIAAVYGPHEAYPKHVQEADRAIVRARYSMAPFSVDERKRPG----PDR 58
Query: 109 ---EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMK 165
E ++ L+S+ + P T+ V I+V+ D I A AL DAGIPM+
Sbjct: 59 RAIELSKVISEALESVIFVEKYPRTSIDVYIEVLQADAGTRVAGITVASLALADAGIPMR 118
Query: 166 HLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGI 225
L V C +LD K E+ F P +I+ E + L M +
Sbjct: 119 DLIVG-CAAGKIDDVVVLDLNKEEDN----FGQADVPMAIMPRTKEIALLQMDGDMSYEE 173
Query: 226 ITSVTHGAMSVDDYFHCLE 244
+T+ AM + H ++
Sbjct: 174 LTTAMDMAMDAAEKIHEMQ 192
>gi|310793767|gb|EFQ29228.1| exosome complex subunit Rrp46 [Glomerella graminicola M1.001]
Length = 243
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 70/148 (47%), Gaps = 16/148 (10%)
Query: 70 VLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPN 129
V+++V GP +++ENP ++ ++V+ +P G G E++ E IL+ L+ + + P
Sbjct: 30 VVSSVNGPMEVQRRDENPFESVVDVVVRPAAGVGGTGERQLENILQSALRQLIPVKNFPR 89
Query: 130 TTTSVIIQVV---HDDGA------------LLPCAINAACAALVDAGIPMKHLAVAICCC 174
+ +QV +D A LLP ++A +L+ A +P+K +A
Sbjct: 90 CLIQITLQVTETPQNDYANSKVVQAQSSLTLLPALFHSAVLSLLSAAVPLKAIATCTTLA 149
Query: 175 SAESGYCIL-DPTKLEEQKMKGFAYLVF 201
E G I+ DP+ LE K L F
Sbjct: 150 ILEDGSKIIADPSPLEADHAKSLHVLSF 177
>gi|71410195|ref|XP_807405.1| ribosomal RNA processing protein 41B [Trypanosoma cruzi strain CL
Brener]
gi|70871397|gb|EAN85554.1| ribosomal RNA processing protein 41B, putative [Trypanosoma cruzi]
Length = 284
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 61/127 (48%), Gaps = 19/127 (14%)
Query: 62 WVGSGDTKVLAAVYGPKAGTKKNENPEKASIEV-----IWKPRTG------------QIG 104
W G T V+AAV GP A + E+ K +++V + PR G +
Sbjct: 34 WYSQGLTTVVAAVNGPVAA--RQEDYRKCNVQVYVNRAVRIPRAGGTDRLCVEEQRLEQQ 91
Query: 105 KPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPM 164
+ + E E+ L ++Q++ L P V + ++ DDGALL A NA AL+DAG+P
Sbjct: 92 RMDAEVEMFLTASIQAVVRLDQFPRCVLEVHVTILADDGALLSVATNALMCALLDAGVPC 151
Query: 165 KHLAVAI 171
+ A+
Sbjct: 152 RTTVAAV 158
>gi|118489169|gb|ABK96391.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 257
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 82/204 (40%), Gaps = 43/204 (21%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +Q RP ++ A GSA + F
Sbjct: 35 RPDGRGFHQCRPAFFRTGAVNSAAGSA-------------YAEF---------------- 65
Query: 65 SGDTKVLAAVYGPKAGTKKNENPE------KASIEVIWKPRTGQIGKPEKEYEIILKRTL 118
G+TKV+ +V+GP+ K + S P G +G KE+ +L + L
Sbjct: 66 -GNTKVIVSVFGPRESKKAMVYSDVGRLNCNVSCTTFATPARG-LGSDNKEFSSMLHKAL 123
Query: 119 QSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHL--AVAICCCSA 176
+ +L P TT V V+ G+ LP I+ A AL DAGI M L V++ C
Sbjct: 124 EGAIMLETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMMYDLVAGVSVSCLGR 183
Query: 177 ESGYCILDPTKLEEQKMKGFAYLV 200
I+DP LEE+ + + ++
Sbjct: 184 N---LIIDPI-LEEESFQDGSLMI 203
>gi|161527940|ref|YP_001581766.1| exosome complex exonuclease 1 [Nitrosopumilus maritimus SCM1]
gi|259645400|sp|A9A5C9.1|ECX1_NITMS RecName: Full=Probable exosome complex exonuclease 1
gi|160339241|gb|ABX12328.1| exosome complex exonuclease 1 [Nitrosopumilus maritimus SCM1]
Length = 244
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 73/190 (38%), Gaps = 28/190 (14%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR ++ R + L A GS+ G I VF + +
Sbjct: 17 RCDGRTVDEPRRIMIKAGGLKNADGSSYIEFGDNKILVG--------VFGPRDVHPKHMS 68
Query: 65 SGDTKVLAAVYGPK---AGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSI 121
DT +L Y + G +KN P + IE+ ++K L+
Sbjct: 69 DTDTGILRVRYHMEPFSVGERKNPAPSRREIEI----------------SKVIKEALEPA 112
Query: 122 CILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYC 181
+L P T V I+V+ DG A+ AA AL DAGIPM+ + AI +
Sbjct: 113 VMLEKFPRTAVDVFIEVLQADGGTRCAALTAASVALADAGIPMRDMVAAIAAGKV-ADTV 171
Query: 182 ILDPTKLEEQ 191
ILD E+Q
Sbjct: 172 ILDVNNEEDQ 181
>gi|71651570|ref|XP_814460.1| ribosomal RNA processing protein 41B [Trypanosoma cruzi strain CL
Brener]
gi|70879434|gb|EAN92609.1| ribosomal RNA processing protein 41B, putative [Trypanosoma cruzi]
Length = 285
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 65/137 (47%), Gaps = 21/137 (15%)
Query: 62 WVGSGDTKVLAAVYGPKAGTKKNENPEKASIEV-----IWKPRTG------------QIG 104
W G T V+AAV GP A + E+ K ++V + PR G +
Sbjct: 34 WYSQGLTTVVAAVNGPVAA--RQEDYRKCGVQVYVNRAVRIPRAGGTDRLCVEEQRVEQR 91
Query: 105 KPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPM 164
+ + E E+ L ++Q++ L P V + ++ DDGALL A NA AL+DAG+P
Sbjct: 92 RMDAEVEMFLTASIQAVVRLDQFPRCVLEVHVTILADDGALLSVATNALMCALLDAGVPC 151
Query: 165 KHL--AVAICCCSAESG 179
+ AV+I + E G
Sbjct: 152 RTTVAAVSIVALTPEDG 168
>gi|291237650|ref|XP_002738745.1| PREDICTED: predicted protein-like [Saccoglossus kowalevskii]
Length = 273
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 79/198 (39%), Gaps = 39/198 (19%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR PN +RP+ C I+ A GSA ++
Sbjct: 37 RHDGRKPNDIRPIFLRCGIISNAKGSA------------------------------YIE 66
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGK--------PEKEYEIILKR 116
+ DTKV AVYGP+ ++ + ++ +K T K EK+ +I+ +
Sbjct: 67 TKDTKVTCAVYGPRQVVRREDFKLTGTLTCDFKFATFSCQKRQQHMQSSNEKDLSLIVLQ 126
Query: 117 TLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSA 176
++ L P + I V+ + G+ L AI A AAL AGI M + V C
Sbjct: 127 AMEPAVCLEKYPRAQIDIFITVLQNGGSALSAAITCASAALAAAGIEMYDVVVG-CSTRQ 185
Query: 177 ESGYCILDPTKLEEQKMK 194
C++DP EE K
Sbjct: 186 IGNTCLVDPAYDEEYNSK 203
>gi|424814253|ref|ZP_18239431.1| ribosomal RNA-processing protein RRP41/SKI6 [Candidatus Nanosalina
sp. J07AB43]
gi|339757869|gb|EGQ43126.1| ribosomal RNA-processing protein RRP41/SKI6 [Candidatus Nanosalina
sp. J07AB43]
Length = 253
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 81/198 (40%), Gaps = 40/198 (20%)
Query: 4 DRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWV 63
+R DGR ++LR +L A GSA V
Sbjct: 14 NRVDGRKADELRETEMEVGVLEEADGSA------------------------------MV 43
Query: 64 GSGDTKVLAAVYGPKAGTKKN-ENPEKASIEVIWKPRTGQI--------GKPEKEYEIIL 114
G+T+V+A+V+GP+ K+ + ++A I++ + + + +E E++
Sbjct: 44 EIGNTRVIASVFGPQDLHPKHLQESDRAVIKMRYNMAPFSVDDRMSPGPNRRAQEIELVA 103
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
K L+ L P + ++VV DG I AA AL DAGIPMK + V+ C
Sbjct: 104 KNALKPALELERFPTAGIDISMEVVESDGGTRVTGITAASLALADAGIPMKGM-VSACAA 162
Query: 175 SAESGYCILDPTKLEEQK 192
+LD E++K
Sbjct: 163 GVVDDTPVLDVNGKEDKK 180
>gi|302798759|ref|XP_002981139.1| hypothetical protein SELMODRAFT_233636 [Selaginella moellendorffii]
gi|300151193|gb|EFJ17840.1| hypothetical protein SELMODRAFT_233636 [Selaginella moellendorffii]
Length = 264
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 100/234 (42%), Gaps = 53/234 (22%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P ++R L ++ A+GSA + G
Sbjct: 10 RLDGRRPLEMRQLHAELGVVENANGSAMFEMG---------------------------- 41
Query: 65 SGDTKVLAAVYGP-KAGTKKNENPEKASIEVIWKPRTGQIGKP---------EKEYEIIL 114
+TKV+AAVYGP + + + ++A + + G E +++
Sbjct: 42 --NTKVIAAVYGPHEVHNRSQQLWDRALVRCEYSMAAFSTGDRRRKGKGNRRSTEISLVI 99
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
++TL++ + + P + + +QV+ DG INAA AL +AGIPM+ L VA C
Sbjct: 100 RQTLEAAILTNLMPKSQIDIYVQVLQADGGTRSACINAAALALAEAGIPMRDL-VASCAA 158
Query: 175 SAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLP--EGSSLVQGE---PMEH 223
+G +LD +E+ P+ +++ P + SL+Q + P+EH
Sbjct: 159 GYLNGTPLLDLNYVEDSGGG-------PDVTVALFPKVDKVSLLQMDSKMPLEH 205
>gi|255720833|ref|XP_002545351.1| exosome complex exonuclease RRP41 [Candida tropicalis MYA-3404]
gi|240135840|gb|EER35393.1| exosome complex exonuclease RRP41 [Candida tropicalis MYA-3404]
Length = 240
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 84/210 (40%), Gaps = 40/210 (19%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR N+LR C R + + S G +V
Sbjct: 10 RIDGRRWNELRRFEC------RINTHPNSSDG-----------------------SSYVE 40
Query: 65 SGDTKVLAAVYGP-KAGTKKNENPEKASIEV---------IWKPRTGQIGKPEKEYEIIL 114
G+TKV+ V GP + + ++ E A+IE+ + + + K E + IL
Sbjct: 41 QGNTKVVCTVQGPIEPQLRSQQHSEHANIEINLTIANFATFERKKRNKNEKRLIELKNIL 100
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
++T ++ + P T + IQV+ DG LL N+ AL+D+GI M +I C
Sbjct: 101 EKTFMESIMINLYPRTNIIINIQVLSQDGGLLSAITNSITLALIDSGISMYDYVSSINCG 160
Query: 175 SAESGYCILDPTKLEEQKMKGFAYLVFPNS 204
++ +LD LEE + V S
Sbjct: 161 LYDT-TPLLDLNNLEENDISNLTIGVIGKS 189
>gi|380488106|emb|CCF37603.1| 3' exoribonuclease [Colletotrichum higginsianum]
Length = 266
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 86/213 (40%), Gaps = 51/213 (23%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFC 60
M + R DGR N+LR L A GS+
Sbjct: 10 MALLRVDGRRWNELRRLHAQIRTQDAADGSS----------------------------- 40
Query: 61 YWVGSGDTKVLAAVYGPK-------AGTKKNE-----NPEKASIEVIWKPRTGQIGKPEK 108
++ G TKV+ V GP AG + E N A + + + G+ K +
Sbjct: 41 -YLEMGHTKVMCVVTGPTEPQRRGGAGGQSKEAAVTVNLVVAGFSSVDRKKRGRNDKRTQ 99
Query: 109 EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLA 168
E E + + + + + P+++ S+ + V+ DG+LL +NA+ AL+DAGIPM
Sbjct: 100 ELEATIAKAVSANLHTHLFPHSSISISLHVLSQDGSLLAALLNASTLALIDAGIPMTDY- 158
Query: 169 VAICCCSAESGYC--------ILDPTKLEEQKM 193
+A C + S Y +LD EEQ++
Sbjct: 159 IAACTAGSTSTYAAADDGADPLLDLNTQEEQEL 191
>gi|449456022|ref|XP_004145749.1| PREDICTED: exosome complex component MTR3-like [Cucumis sativus]
gi|449531263|ref|XP_004172607.1| PREDICTED: exosome complex component MTR3-like [Cucumis sativus]
Length = 258
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 84/204 (41%), Gaps = 43/204 (21%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +Q RP ++ A GSA + F
Sbjct: 35 RPDGRGFHQCRPAFFRTGAVNAASGSA-------------YAEF---------------- 65
Query: 65 SGDTKVLAAVYGPKAGTKKNENPE------KASIEVIWKPRTGQIGKPEKEYEIILKRTL 118
G+TKV+ +V+GP+ K + S P GQ G K++ +L ++L
Sbjct: 66 -GNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQ-GSENKDFSSMLHKSL 123
Query: 119 QSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHL--AVAICCCSA 176
+ IL P TT V V+ G+ LP I+ A AL DAGI + L +V++ C
Sbjct: 124 EGAIILESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCF-- 181
Query: 177 ESGYCILDPTKLEEQKMKGFAYLV 200
G +L T LEE+ + + ++
Sbjct: 182 --GKNLLIDTVLEEENYQDGSLMI 203
>gi|366992712|ref|XP_003676121.1| hypothetical protein NCAS_0D01780 [Naumovozyma castellii CBS 4309]
gi|342301987|emb|CCC69759.1| hypothetical protein NCAS_0D01780 [Naumovozyma castellii CBS 4309]
Length = 246
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 81/201 (40%), Gaps = 43/201 (21%)
Query: 5 RADGRNPNQLRPLACSCSI-LHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWV 63
R DGR N+LR CS + H + GS+ QG
Sbjct: 13 RLDGRRWNELRRFECSINTHSHASDGSSYLEQG--------------------------- 45
Query: 64 GSGDTKVLAAVYGPKAGTKKNE-NPEKASIEVIWK-------PRTGQIGKPEK---EYEI 112
+ KV+ V GPK T +++ + EKA +++ R+ K E+ E +
Sbjct: 46 ---NNKVITLVKGPKEPTLRSQMDTEKAILKISVNITQFSKFERSKSSHKNERRVLEMQT 102
Query: 113 ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAIC 172
L RT + +L I P T + + V+ DG ++ IN AL+DAGI M +
Sbjct: 103 ALIRTFEKNVMLNIYPRTLIDIEVHVLQQDGGIMGSLINGITLALIDAGIAMYDYISGVS 162
Query: 173 CCSAESGYCILDPTKLEEQKM 193
++ +LD LEE M
Sbjct: 163 IGLYDT-TPLLDVNSLEENAM 182
>gi|424819695|ref|ZP_18244762.1| 3' exoribonuclease [Candidatus Parvarchaeum acidophilus
ARMAN-5_'5-way FS']
gi|326422491|gb|EGD71888.1| 3' exoribonuclease [Candidatus Parvarchaeum acidophilus
ARMAN-5_'5-way FS']
Length = 236
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 65/276 (23%), Positives = 105/276 (38%), Gaps = 57/276 (20%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFC 60
M +R D R N+LRP+ ++ A GSA FR
Sbjct: 1 MYEERFDKRAFNELRPMEAETGVVPNAKGSAR----FRI--------------------- 35
Query: 61 YWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIW---------KPRTGQIGKPEKEYE 111
G+T+ +AAVYGP+ K + EK VI P + G ++ E
Sbjct: 36 -----GNTEAIAAVYGPE--EVKPRHIEKVDRGVIVCKYDMLPFSVPDRAKPGMDRRDIE 88
Query: 112 I--ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAV 169
I ++ L IL P +V + + D ++ AA A DAG+PM+ L
Sbjct: 89 ISQVITNALNRAIILEDMPRAMINVRVYITQADAGTRCASLTAASMACADAGLPMRDLVA 148
Query: 170 AICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSV 229
A+ C LD +K EE +G P + L P ++ I+
Sbjct: 149 AVAAGKIGDHVC-LDLSKEEEDFHEGEGATDVPIAFL-------------PSKNEILLLQ 194
Query: 230 THGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKL 265
G +S D+ +E G+ + K+ + + +L+ +
Sbjct: 195 LDGRVSRDELKKVIEVGKEGAMKIYELEKEALKRRF 230
>gi|297734171|emb|CBI15418.3| unnamed protein product [Vitis vinifera]
Length = 134
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/39 (66%), Positives = 30/39 (76%)
Query: 234 MSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGDLSKA 272
VDDY HCLERG+A SAK+S FLRR+LQ + P D SKA
Sbjct: 95 FQVDDYLHCLERGQATSAKMSAFLRRNLQWQGPNDSSKA 133
>gi|328850748|gb|EGF99909.1| hypothetical protein MELLADRAFT_68249 [Melampsora larici-populina
98AG31]
Length = 271
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 82/179 (45%), Gaps = 30/179 (16%)
Query: 63 VGSGDTKVLAAVYGPKAGTK----------KNENPEKASIEVIW---------KPRTGQI 103
V G TKV ++V GPK T K+ SI+V + + ++
Sbjct: 43 VSHGLTKVTSSVSGPKEITSSSSSNHKSNLKSHTNNVGSIQVYVNMTNFSQSDRKKLSKV 102
Query: 104 GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIP 163
K + ++ T +S+ +L + P + + I+V+ +DG LL AINA +L+ +GI
Sbjct: 103 DKRLMDLSFSIQNTFESVIMLKLYPRSLIEIFIEVLQEDGGLLQAAINATSLSLIASGIS 162
Query: 164 MKHLAVAICCCSAES-GYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGS--SLVQGE 219
++ +AI S + +LD T LE+ L P+ ++ LP S SL+Q E
Sbjct: 163 IQDYILAISIGSLSNPNLPLLDVTNLEQ--------LDLPSLTIASLPRSSKISLIQVE 213
>gi|390598731|gb|EIN08128.1| hypothetical protein PUNSTDRAFT_102893 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 276
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 73/159 (45%), Gaps = 20/159 (12%)
Query: 66 GDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILT 125
G TK LA+V GP +NE P +A+ EVI +P +G G K L+ L ILT
Sbjct: 23 GLTKCLASVSGPIEVRPQNELPTQAAFEVIVRPLSGVAGTRAKSIGTTLQFLLAPSIILT 82
Query: 126 INPNTTTSVIIQVVHDDGALLP----------------CAINAACAALVDAG-IPMKHLA 168
+P T +++Q +++D P INA+ AL++AG I M+ +
Sbjct: 83 AHPRTLLQLVVQALNEDSPPTPSLCRMTFLPDTMSGLAAMINASTIALLNAGSIQMRGVV 142
Query: 169 VAICCCSAESGYCILDPTKLEEQKMKG---FAYLVFPNS 204
A+ SG ++DP E + FA+++ S
Sbjct: 143 CAVAVGVDTSGSLLVDPAPSELPHLAACGCFAFIIRATS 181
>gi|134076396|emb|CAK48214.1| unnamed protein product [Aspergillus niger]
Length = 248
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 61/132 (46%), Gaps = 18/132 (13%)
Query: 62 WVGSGDTKVLAAVYGPKAGTKKNENPEKASIE---------------VIWKPRTGQIGKP 106
++ G+T +L +V+GP G + + A V K R G K
Sbjct: 42 YLAMGNTAILCSVHGPAEGRRGDATGGAAGSAGAVVEVDVNVAGFAGVDRKRRAGGSDKQ 101
Query: 107 EKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKH 166
IL+ QS + P++T S+ + V+ DG+LL A+NA ALVDAGIPM
Sbjct: 102 SSRVATILRSAFQSHLHTHLYPHSTISIHVSVLSSDGSLLAAAVNACTLALVDAGIPMPG 161
Query: 167 LAVAICCCSAES 178
L +C C+A +
Sbjct: 162 L---LCGCTAST 170
>gi|310798773|gb|EFQ33666.1| 3' exoribonuclease family protein [Glomerella graminicola M1.001]
Length = 266
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 86/213 (40%), Gaps = 51/213 (23%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFC 60
M + R DGR N+LR L A GS+
Sbjct: 10 MALLRVDGRRWNELRRLHAQIRTQEAADGSS----------------------------- 40
Query: 61 YWVGSGDTKVLAAVYGPK-------AGTKKNE-----NPEKASIEVIWKPRTGQIGKPEK 108
++ G TKV+ V GP AG + E N A + + + G+ K +
Sbjct: 41 -YLEMGHTKVMCVVTGPTEPQRRGGAGGQTKEAAVTVNLVVAGFSSVDRRKRGRNDKRTQ 99
Query: 109 EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLA 168
E E + + + + + P+++ S+ + V+ DG+LL +NA+ AL+DAGIPM
Sbjct: 100 ELEATIAKAVSANLHTHLFPHSSISISLHVLSQDGSLLAALLNASTLALIDAGIPMTDY- 158
Query: 169 VAICCCSAESGYC--------ILDPTKLEEQKM 193
+A C + S Y +LD EEQ++
Sbjct: 159 IAACTAGSTSTYAAADDGADPLLDLNTQEEQEL 191
>gi|302801728|ref|XP_002982620.1| hypothetical protein SELMODRAFT_155148 [Selaginella moellendorffii]
gi|300149719|gb|EFJ16373.1| hypothetical protein SELMODRAFT_155148 [Selaginella moellendorffii]
Length = 242
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 84/196 (42%), Gaps = 41/196 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P ++R L ++ A+GSA + G
Sbjct: 10 RLDGRRPLEMRQLHAELGVVENANGSAMFEMG---------------------------- 41
Query: 65 SGDTKVLAAVYGP-KAGTKKNENPEKASIEVIWKPRTGQIGKP---------EKEYEIIL 114
+TKV+AAVYGP + + + ++A + + G E +++
Sbjct: 42 --NTKVIAAVYGPHEVHNRSQQLWDRALVRCEYSMAAFSTGDRRRKGKGNRRSTEISLVI 99
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
++TL++ + + P + + +QV+ DG INAA AL +AGIPM+ L VA C
Sbjct: 100 RQTLEAAILTNLMPKSQIDIYVQVLQADGGTRSACINAAALALAEAGIPMRDL-VASCAA 158
Query: 175 SAESGYCILDPTKLEE 190
+G +LD +E+
Sbjct: 159 GYLNGTPLLDLNYVED 174
>gi|402080799|gb|EJT75944.1| exosome complex exonuclease RRP41 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 286
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 73/168 (43%), Gaps = 12/168 (7%)
Query: 90 ASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCA 149
A + + R + K +E + L R L S + P++T + + V+ DG+LL
Sbjct: 101 AGFSSVDRKRRARSDKRIQELQATLSRALASTLHTHLFPHSTITFSLHVLAQDGSLLAAL 160
Query: 150 INAACAALVDAGIPMKHLAVAICCCSAESGYC--------ILDPTKLEEQKMKGFAYLVF 201
INAA A VDAGIPM VA C + S Y +LD EE ++ G
Sbjct: 161 INAASLAAVDAGIPMIDY-VAACTAGSTSSYAAGDDSADPLLDLNHQEETELPGLTVATL 219
Query: 202 PNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCL--ERGR 247
+S V+ S VQ +E G++ G + + + ERGR
Sbjct: 220 GSSDRVVVLNCESRVQASRLE-GMLAVAVDGCKQMREILDRVVRERGR 266
>gi|453086483|gb|EMF14525.1| ribosomal protein S5 domain 2-like protein [Mycosphaerella
populorum SO2202]
Length = 371
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 93/211 (44%), Gaps = 53/211 (25%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR N+LR ++ S A GS+ +F +
Sbjct: 131 RVDGRRWNELRCISGQMSTQAAADGSS---------------YFEM-------------- 161
Query: 65 SGDTKVLAAVYGPKAGTKKN-----ENPEKASIEV---------IWKPRTGQIGKPEKEY 110
G+TKV+ V GP+ T+ + ++ASIEV + + + + K +E
Sbjct: 162 -GNTKVICTVVGPRQQTRSGGGGGRDQTKEASIEVEIGIAGFSGMDRKKRSRSDKRTQEM 220
Query: 111 EIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVA 170
+ + S ++ P +T S+++ V+ DGALL +NAA AL+DAG+PMK VA
Sbjct: 221 QYTISSAFASTVFTSLYPQSTISIVLHVLSQDGALLAACLNAATLALIDAGVPMKDY-VA 279
Query: 171 ICCCSAESGYC--------ILDPTKLEEQKM 193
C + + Y +LD LEEQ++
Sbjct: 280 ACTVGSTASYASNEEEADPLLDLNGLEEQEL 310
>gi|399219118|emb|CCF76005.1| unnamed protein product [Babesia microti strain RI]
Length = 269
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 6/113 (5%)
Query: 65 SGDTKVLAAVYGPKAGTKKNENP------EKASIEVIWKPRTGQIGKPEKEYEIILKRTL 118
S T VL ++ GP +K P + + + +P G I + YE ++ + L
Sbjct: 50 SDHTSVLCSMLGPYEERRKRIKPTFAVYPNRLRLSIFIRPNCGSIANKYRNYEFVINKIL 109
Query: 119 QSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAI 171
Q+I P S +IQ+ +D G+LL +IN++ A + GI ++ + +A+
Sbjct: 110 QTIITTNTMPQCGLSFVIQIFNDSGSLLAHSINSSIVACIIGGISIEFIPIAV 162
>gi|367005682|ref|XP_003687573.1| hypothetical protein TPHA_0J03200 [Tetrapisispora phaffii CBS 4417]
gi|357525877|emb|CCE65139.1| hypothetical protein TPHA_0J03200 [Tetrapisispora phaffii CBS 4417]
Length = 246
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 81/201 (40%), Gaps = 43/201 (21%)
Query: 5 RADGRNPNQLRPLACSCSI-LHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWV 63
R DGR N++R CS + H A GS+ QG
Sbjct: 13 RLDGRRWNEVRRFECSINTHAHAADGSSYLEQG--------------------------- 45
Query: 64 GSGDTKVLAAVYGPKAGTKKNE-NPEKASIEVIWK-------PRTGQIGKPEK---EYEI 112
+ K++ V GPK + +++ N KA+++V R+ K E+ E +
Sbjct: 46 ---NNKIITLVKGPKEPSLRSQANSLKATMDVSVNITRFSKFERSAISHKNERRVLEIQT 102
Query: 113 ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAIC 172
L RT + +L + P T S+ + ++ DG + IN AL+DAGI M I
Sbjct: 103 ALLRTFEKNIMLHLYPRTQISIQVHILQQDGGMFASLINGITLALIDAGIAMYDYVSGIS 162
Query: 173 CCSAESGYCILDPTKLEEQKM 193
++ +LD LEE M
Sbjct: 163 IGLFDT-TPLLDVNTLEENAM 182
>gi|322703951|gb|EFY95552.1| exosome complex exonuclease RRP41 [Metarhizium anisopliae ARSEF 23]
Length = 273
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 84/216 (38%), Gaps = 58/216 (26%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR N+LR L A GS+ YF
Sbjct: 14 RVDGRRWNELRRLHAQIRTQDAADGSS--------------------------YFEM--- 44
Query: 65 SGDTKVLAAVYGPKAGTKKNE----------NPEKASIEV---------IWKPRTGQIGK 105
G TKV+ V GP + + ASI V + + + + K
Sbjct: 45 -GHTKVMCVVTGPSEQQQAQAQAQRRGGQAPGRDAASIIVNVVIAGFSSVDRKKRARSDK 103
Query: 106 PEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMK 165
+E EI + + L S + P+++ +V + V+ DG+LL INAA A++DAGIPM
Sbjct: 104 RTQEIEITIAKALSSTVHTHLFPHSSITVSLHVLSQDGSLLAALINAATLAVIDAGIPMT 163
Query: 166 HLAVAICCCSAESGYC--------ILDPTKLEEQKM 193
+A C + S Y +LD EEQ++
Sbjct: 164 DY-IAACTAGSTSSYAAGDDSADPLLDLNNQEEQEL 198
>gi|67470372|ref|XP_651154.1| 3' exoribonuclease family protein [Entamoeba histolytica HM-1:IMSS]
gi|56467852|gb|EAL45767.1| 3' exoribonuclease family protein [Entamoeba histolytica HM-1:IMSS]
gi|449710454|gb|EMD49524.1| 3' exoribonuclease family protein [Entamoeba histolytica KU27]
Length = 223
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 1/120 (0%)
Query: 54 TSKCYFCYWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEK-EYEI 112
+SK CY G + V++ V P+ KK NP++A ++V R + E E
Sbjct: 24 SSKSDGCYMFKQGKSCVISGVNAPRDCPKKEANPDRAIVKVEVYERCSSFDNQRRTELEE 83
Query: 113 ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAIC 172
+K ++ + PN +V Q+V DDG++ +NAA AL+ +G+ MK + V +C
Sbjct: 84 FIKSGVEWTVLSEQYPNGLINVCNQIVKDDGSIEAVTMNAAMCALLFSGVDMKGIVVGMC 143
>gi|380492438|emb|CCF34604.1| exosome complex subunit Rrp46 [Colletotrichum higginsianum]
Length = 243
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 71/148 (47%), Gaps = 16/148 (10%)
Query: 70 VLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPN 129
V+++V GP +++ENP ++ ++V+ +P G G E++ E +L+ +L+ + + P
Sbjct: 30 VVSSVNGPMEVQRRDENPFESVVDVVVRPAAGVGGTAERQLENVLQSSLRQLVPVKSFPR 89
Query: 130 TTTSVIIQVV---HDDGA------------LLPCAINAACAALVDAGIPMKHLAVAICCC 174
+ +QV +D A LLP ++A L+ A +P+K +A
Sbjct: 90 CLIQITLQVTETPQNDYANSKIVQAQSSLPLLPALFHSAILGLLSAAVPLKGIATCTTLA 149
Query: 175 SAESGYCIL-DPTKLEEQKMKGFAYLVF 201
E+G I+ DP+ LE + L F
Sbjct: 150 VLENGSKIVADPSPLEVDQATSLHVLSF 177
>gi|320167933|gb|EFW44832.1| conserved hypothetical protein [Capsaspora owczarzaki ATCC 30864]
Length = 229
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 76/165 (46%), Gaps = 21/165 (12%)
Query: 68 TKVLAAVYGPKAGTKK---NENPEKASIEV------IWKPRT-GQIGK--------PEKE 109
T+V+AAVYGP+ T+ + E+A ++ PR +IG +++
Sbjct: 20 TRVMAAVYGPRENTRAGGLQQFNEQAVLQCDVARAPFASPRDDARIGTDANTSAAAADRQ 79
Query: 110 YEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAV 169
+ + LQS L ++ + + ++ DDG L AIN AL DAGI M +
Sbjct: 80 FATSVATALQSSVRLEKYAKSSIDLFVTIIGDDGGALAAAINCCTLALADAGIEMNDMVT 139
Query: 170 AICCCSAESGYCIL-DPTKLEEQKMKGFAY--LVFPNSILSVLPE 211
A A + +L DPT LEE + A L ++++++L +
Sbjct: 140 AASVALAANTNIVLWDPTHLEESRASAIATQALRVSDNLVTLLDQ 184
>gi|303390958|ref|XP_003073709.1| exosome RNAse PH-like protein [Encephalitozoon intestinalis ATCC
50506]
gi|303302857|gb|ADM12349.1| exosome RNAse PH-like protein [Encephalitozoon intestinalis ATCC
50506]
Length = 188
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 66 GDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKP-EKEYEIILKRTLQSICIL 124
+T V V+GP + E+PE A ++V W+ G+ +K + +++ L IL
Sbjct: 23 NNTTVFCIVHGPSDSISRQEDPEMAILDVKWRDIILINGRIYDKYFSREIEKILSKRIIL 82
Query: 125 TINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILD 184
++P + + VV + L CA+NAA AL DAGIP+ + A + E + D
Sbjct: 83 ELDPCRSIQISFNVVGEVRNTLFCAVNAALLALSDAGIPLISMFYASSSFTHEEEVIVFD 142
>gi|167396187|ref|XP_001741945.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165893254|gb|EDR21576.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
Length = 223
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 1/120 (0%)
Query: 54 TSKCYFCYWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEK-EYEI 112
+SK CY G + +++ V P+ K+ NP++A ++V R + E E
Sbjct: 24 SSKSDGCYMFKQGKSCIISGVNAPRDCPKREANPDRAVVKVEVYERCSSFDSQRRTELEE 83
Query: 113 ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAIC 172
+K ++ I PN +V Q+V DDG++ +NAA AL+ +G+ MK + V +C
Sbjct: 84 FIKSGVEWTVISEQYPNGLINVCNQIVKDDGSIEAVTMNAAMCALLFSGVDMKGIVVGMC 143
>gi|367015678|ref|XP_003682338.1| hypothetical protein TDEL_0F03160 [Torulaspora delbrueckii]
gi|359750000|emb|CCE93127.1| hypothetical protein TDEL_0F03160 [Torulaspora delbrueckii]
Length = 232
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 62/128 (48%), Gaps = 8/128 (6%)
Query: 67 DTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTI 126
DTKVL AV GP + E P + ++EV+ +P G EK E L+ L + + +
Sbjct: 24 DTKVLCAVTGPVEPKARQELPTRLALEVVVRPAKGVPNTREKLMEDRLRAVLTPLIVCSK 83
Query: 127 NPNTTTSVIIQVV---HDDGAL----LPCAINAACAALVDAGIPMKHLAVAICCCS-AES 178
P + Q++ D+G L C INAA AL+DA + + + ++ ES
Sbjct: 84 YPRQLCQITCQILEAGEDEGEFSQKELSCCINAAFLALIDAQLALHSFSSSVSLAVLKES 143
Query: 179 GYCILDPT 186
G +L+PT
Sbjct: 144 GELVLNPT 151
>gi|46108418|ref|XP_381267.1| hypothetical protein FG01091.1 [Gibberella zeae PH-1]
Length = 250
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/247 (21%), Positives = 99/247 (40%), Gaps = 58/247 (23%)
Query: 59 FCYWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTL 118
F Y G V+AAV GP +++EN +A ++VI +P G G E++ E I++ L
Sbjct: 23 FSY----GGYAVIAAVNGPVEAQRRDENAFEALVDVIVRPAAGVGGTRERQLESIMQAAL 78
Query: 119 QSICILTINPNTTTSVIIQVVHD---------------DGALLPCAINAACAALVDAGIP 163
+ + + P + + +QV + ++P +++A L+ A IP
Sbjct: 79 RQLIPVRDYPRSVIQITLQVAETPENAYVNAKIVQAQLNLPIIPALLHSAILGLLSAAIP 138
Query: 164 MKHLAVA--ICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPM 221
+K + A I E I+DP+ ++ + K L F +
Sbjct: 139 LKTIGAATLIAVPEEEGKDIIVDPSAVDIDRAKSVHALAFTS------------------ 180
Query: 222 EHGIITSVTHGAMSVDDYFHCLERGRAA-------------------SAKLSDFLRRSLQ 262
++ S + GA + D++ L+ G+ S + F+R ++
Sbjct: 181 HDELLLSESEGAFTPDEWTKVLQLGQRVCCEHQQPGLDTAMSGDDIESPSMRQFIRSAMG 240
Query: 263 SKLPGDL 269
+K+ DL
Sbjct: 241 TKVAEDL 247
>gi|407040721|gb|EKE40289.1| 3' exoribonuclease family protein [Entamoeba nuttalli P19]
Length = 223
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 1/120 (0%)
Query: 54 TSKCYFCYWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEK-EYEI 112
+SK CY G + V++ V P+ KK NP++A ++V R + E E
Sbjct: 24 SSKSDGCYMFKQGKSCVISGVNAPRDCPKKEANPDRAIVKVEVYERCSSFDNQRRTELEE 83
Query: 113 ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAIC 172
+K ++ + PN +V Q+V DDG++ +NAA AL+ +G+ MK + V +C
Sbjct: 84 FIKSGVEWTVLSEQYPNGLINVCNQIVKDDGSIEAVTMNAAMCALLFSGVDMKGIVVGMC 143
>gi|401842317|gb|EJT44550.1| RRP46-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 223
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 88/207 (42%), Gaps = 20/207 (9%)
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICIL 124
S DTK++ +V GP + E P + ++E+I +P G EK E L+ L +
Sbjct: 21 SQDTKIICSVTGPIEAKARQELPTQLALEIIVRPAKGVATTREKLLEDKLRAVLTPLIAR 80
Query: 125 TINPNTTTSVIIQVV---HDDGAL----LPCAINAACAALVDAGIPMKHLAVAI-CCCSA 176
P + Q++ D+ L C INAA LVDAGI M + +I
Sbjct: 81 YCYPRQLCQITCQILESGEDEPEFSLRELSCCINAAFLGLVDAGIAMNSMCASIPIAIMK 140
Query: 177 ESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSV 236
+S I +PT +++K + +SV V G + ++ ++G +
Sbjct: 141 DSNEIIANPTA---EQLK---------TSVSVHSLALEFVDGGNVIKNVLLLDSNGDFNE 188
Query: 237 DDYFHCLERGRAASAKLSDFLRRSLQS 263
D F+ LE G +L LR+ +Q
Sbjct: 189 DQLFNVLELGEQKCQELVQDLRKIIQD 215
>gi|358379900|gb|EHK17579.1| hypothetical protein TRIVIDRAFT_43493 [Trichoderma virens Gv29-8]
Length = 247
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 70/153 (45%), Gaps = 17/153 (11%)
Query: 66 GDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILT 125
G + AAV GP +++ENP +A ++V +P G G E++ E IL+ L+ + +
Sbjct: 23 GGYTITAAVNGPVEAQRRDENPFEALVDVNVRPAAGVGGTAERQLEAILQPALRHLIPVR 82
Query: 126 INPNTTTSVIIQVVHD---------------DGALLPCAINAACAALVDAGIPMKHLAVA 170
P V +QV+ + ++P ++AA L+ A IP+K +A A
Sbjct: 83 NFPRCVIQVTLQVMEAPENAYVNAKVLQPRLNLGIIPALLHAAILGLLTATIPLKTVASA 142
Query: 171 ICCC--SAESGYCILDPTKLEEQKMKGFAYLVF 201
C +A+ +DPT E + + L F
Sbjct: 143 TCLAITNADGSTVKVDPTPAEIDQARSVHVLGF 175
>gi|417396273|gb|JAA45170.1| Putative exosome complex component rrp46-like protein [Desmodus
rotundus]
Length = 151
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 58/128 (45%), Gaps = 31/128 (24%)
Query: 9 RNPN-QLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGD 67
R P LR AC ++L R GSAS+ QG D
Sbjct: 22 RGPGCSLRHFACEQNLLSRPDGSASFLQG------------------------------D 51
Query: 68 TKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTIN 127
T +LA VYGP E KA++EVI +P+ G G EK E +++ T +++ + ++
Sbjct: 52 TSILAGVYGPAEVKVSKEIFNKATLEVILRPKIGLPGVAEKSRERLIRNTCEAVVLGVLH 111
Query: 128 PNTTTSVI 135
P T+ +V+
Sbjct: 112 PRTSITVV 119
>gi|115442662|ref|XP_001218138.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114188007|gb|EAU29707.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 268
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 61/130 (46%), Gaps = 18/130 (13%)
Query: 62 WVGSGDTKVLAAVYGPKAG-----TKKNENPEKASIEVI----------WKPRTGQIGKP 106
++ G+T ++ +V+GP G T + A +EV K R G +
Sbjct: 42 YLAMGNTTIMCSVHGPAEGRRGDATGGSAGSSGAVVEVDVNVAGFAGVDRKRRAGGSDRQ 101
Query: 107 EKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKH 166
L+ QS + P++T S+ + V+ DG+LL A+NA ALVDAGIPM
Sbjct: 102 SSRVATTLRAAFQSHLHTYLYPHSTISIHVSVLSSDGSLLAAAVNACTLALVDAGIPMPG 161
Query: 167 LAVAICCCSA 176
L +C C+A
Sbjct: 162 L---LCGCTA 168
>gi|366993555|ref|XP_003676542.1| hypothetical protein NCAS_0E01120 [Naumovozyma castellii CBS 4309]
gi|342302409|emb|CCC70182.1| hypothetical protein NCAS_0E01120 [Naumovozyma castellii CBS 4309]
Length = 228
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 93/221 (42%), Gaps = 24/221 (10%)
Query: 62 WVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSI 121
+ S TK++ +V GP + E P + ++E+I +P G EK E L+ + I
Sbjct: 18 LIESKQTKIICSVTGPIEPKSRQELPTQLALEIIIRPAAGVPNTREKLMEDKLRAVITPI 77
Query: 122 CILTINPNTTTSVIIQVVHDDGALLPCA-------INAACAALVDAGIPMKHL--AVAIC 172
+ P + +Q+++ + L A INA AL+DAGI + + V I
Sbjct: 78 ITRYLYPRQLCQITLQILNSGESELEFAQRELATCINATLIALIDAGIALNSMCACVPIA 137
Query: 173 CCSAESG---YCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSV 229
S E I+DP+ EE K +++ LV ++
Sbjct: 138 LTSKEGSDETLLIIDPSD-EELKSSNSVHVL-----------ALELVDQCKTVKNVLLLD 185
Query: 230 THGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGDLS 270
++G + D F+ LE G KL +R ++SK+ D++
Sbjct: 186 SNGDFNEKDLFNILESGEVEVLKLGKQIRHIVESKINSDIT 226
>gi|395546050|ref|XP_003774907.1| PREDICTED: exosome complex component MTR3-like [Sarcophilus
harrisii]
Length = 305
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 70/156 (44%), Gaps = 15/156 (9%)
Query: 54 TSKCYFCYWVGSGDTKVLAAVYGPK---AGTKKNENPEKASIEVIWKPRTGQ-------- 102
TS+ ++ SGDTK++A+VYGP+ G + + P +G+
Sbjct: 53 TSQATGSSYLESGDTKIVASVYGPRQVEGGEPLTGLQGRLICDFRRAPFSGRGKRRVPSS 112
Query: 103 IGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGI 162
+ EKE + L+ L L P V + V+ D GA+L I AA AL DAGI
Sbjct: 113 NNREEKEMSLALQEALMPAVQLLRYPRAQLEVYVLVLEDGGAILASGIIAASLALADAGI 172
Query: 163 PMKHLAVA---ICCCSAESGYCILDPTKLEEQKMKG 195
M L A + AE + +LDP EEQ+ G
Sbjct: 173 EMFDLVSACSLVLSGDAEPVW-LLDPVLYEEQQACG 207
>gi|255513309|gb|EET89575.1| 3' exoribonuclease [Candidatus Micrarchaeum acidiphilum ARMAN-2]
Length = 246
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 69/265 (26%), Positives = 115/265 (43%), Gaps = 54/265 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR+ N+LRPL IL A+GSA + W
Sbjct: 16 RLDGRDFNELRPLKIEAGILANANGSA---------------------------YLEW-- 46
Query: 65 SGDTKVLAAVYGPKAGTKKN-ENPEKASIEVIWK--PRT-----GQIGKPEKEYEI--IL 114
G+ KVLAAVYGPK T ++ + KA I+ + P + G+ G + EI +
Sbjct: 47 -GNNKVLAAVYGPKEATPRHLADTNKAIIKCRYSMAPFSSMGDHGRSGPNRRAIEISKVT 105
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
K +++ +L P + + I+++ DG I AA AL +AGI +K + A+
Sbjct: 106 KEVFENVVMLEEFPGSEIEIFIEILQSDGGTRAAGITAAAVALANAGIHVKDMVYAVSAG 165
Query: 175 SAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAM 234
+ + ++D +E+ ++ P +S+ P+ +S++ + M+ G AM
Sbjct: 166 RIDE-HVVIDVNMIEDN----YSDADMP---VSISPKDNSVLLLQ-MDGGFTKEQFGEAM 216
Query: 235 SVDDYFHCLERGRAASAKLSDFLRR 259
+ LE G+ S D L+R
Sbjct: 217 KM-----ILESGKVISKVQRDALKR 236
>gi|169778981|ref|XP_001823955.1| exosome complex endonuclease 1 [Aspergillus oryzae RIB40]
gi|238499561|ref|XP_002381015.1| exosome complex endonuclease 1, putative [Aspergillus flavus
NRRL3357]
gi|83772694|dbj|BAE62822.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220692768|gb|EED49114.1| exosome complex endonuclease 1, putative [Aspergillus flavus
NRRL3357]
gi|391869326|gb|EIT78525.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp41 [Aspergillus
oryzae 3.042]
Length = 269
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 61/130 (46%), Gaps = 18/130 (13%)
Query: 62 WVGSGDTKVLAAVYGPKAGTKKNEN-----PEKASIEVI----------WKPRTGQIGKP 106
++ G+T ++ +V+GP G + + A +EV K R G K
Sbjct: 42 YLAMGNTTIMCSVHGPAEGRRGDATGGAAGSSGAVVEVDVNVAGFAGVDRKRRAGGSDKQ 101
Query: 107 EKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKH 166
L+ QS + P++T S+ + V+ DG+LL AINA ALVDAGIPM
Sbjct: 102 SSRIATTLRAAFQSHLHTYLYPHSTISIHVSVLSADGSLLAAAINACTLALVDAGIPMPG 161
Query: 167 LAVAICCCSA 176
L +C C+A
Sbjct: 162 L---LCGCTA 168
>gi|254585869|ref|XP_002498502.1| ZYRO0G11814p [Zygosaccharomyces rouxii]
gi|238941396|emb|CAR29569.1| ZYRO0G11814p [Zygosaccharomyces rouxii]
Length = 245
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 72/172 (41%), Gaps = 42/172 (24%)
Query: 5 RADGRNPNQLRPLACSCSI-LHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWV 63
R DGR N+LR CS + H A GS+ QG
Sbjct: 13 RVDGRRWNELRRFDCSINTHSHAADGSSYLEQG--------------------------- 45
Query: 64 GSGDTKVLAAVYGPKAGTKKNE-NPEKASIEV---IWK----PRTGQIGKPEK---EYEI 112
+ K++ V GPK + +++ +P KA ++V I K R+ K E+ E +
Sbjct: 46 ---NNKIITLVKGPKEPSLRSQMDPTKALLKVSVNITKFSKTERSKTSHKNERRVLEIQT 102
Query: 113 ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPM 164
L RT +L I P T + I V+ DG L+ IN AL+DAGI M
Sbjct: 103 ALTRTFNKNVMLHIYPRTLIDIEIHVLQQDGGLVGTLINGITLALIDAGIAM 154
>gi|291000756|ref|XP_002682945.1| 3'-5' exoribonuclease/RNA-binding protein-like protein [Naegleria
gruberi]
gi|284096573|gb|EFC50201.1| 3'-5' exoribonuclease/RNA-binding protein-like protein [Naegleria
gruberi]
Length = 300
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 93/240 (38%), Gaps = 52/240 (21%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R D R ++ R + ++ +A GSA Y Y G
Sbjct: 65 RQDNRTCDKFRNVFMQVGVIKQARGSA--------------------------YMEYQNG 98
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEK---------------- 108
TKV+ +VYGP+ + +NE + +I+ ++
Sbjct: 99 ---TKVICSVYGPRQISARNEFSDIGAIQCEYRVANFAYQSSNNQSTFLNNSSNNNRRHH 155
Query: 109 -EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHL 167
E I L+ L+ L P + V ++ DDG+ L AI+ A AL +AGI M +
Sbjct: 156 VENSIHLREALEVSIRLDKYPKSVIDVYCFILQDDGSALSAAISCASLALANAGIEMYDM 215
Query: 168 AVAICCCSAESGYCILDPTKLEEQKMKG---FAYLVFPNSILSVLPEGSSLVQ--GEPME 222
V+ C S G+ I+DPT LE + G AY+ N + + G Q GE M+
Sbjct: 216 -VSACTTSELEGHIIVDPTNLEYKYASGGMVCAYMSNLNQVTQLSQVGDMSYQKIGEAMD 274
>gi|320590667|gb|EFX03110.1| exosome complex subunit [Grosmannia clavigera kw1407]
Length = 246
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 45/73 (61%)
Query: 66 GDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILT 125
G V A+ GP +++E+P+ A+I+V+ +P G G E+ +E+IL++TLQ I ++
Sbjct: 25 GGYTVTASANGPIEAQRRDEDPDAANIDVVVRPAAGVGGPSERNHELILQKTLQDIVLVQ 84
Query: 126 INPNTTTSVIIQV 138
P T V++Q+
Sbjct: 85 EFPRCTIQVVLQI 97
>gi|357625820|gb|EHJ76127.1| mRNA transport regulator 3 [Danaus plexippus]
Length = 306
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 72/163 (44%), Gaps = 14/163 (8%)
Query: 68 TKVLAAVYGPKAGTKKNENPEKASI--EVIWKP------RTGQI-GKPEKEYEIILKRTL 118
TKV +V+ P+ +NE + EV + P R + E+ + LK+ L
Sbjct: 75 TKVACSVFDPREIVHQNEYSTLGQLYCEVKYAPFSCRGERKALVPDSDERALSVALKKAL 134
Query: 119 QSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAES 178
+ + PN + I ++ +DGA LP AINAA AL DA +PM + A +
Sbjct: 135 EPAVCRHLFPNYQIDIFIYILENDGACLPAAINAAGLALSDAAVPMYDIITA-SSLAISG 193
Query: 179 GYCILDPTKLEEQ----KMKGFAYLVFPNSILSVLPEGSSLVQ 217
+DPT EEQ +G + V S+L L + S Q
Sbjct: 194 DKVFVDPTDDEEQLAIRDHEGVNHGVITMSMLPELQQVSDYRQ 236
>gi|378727125|gb|EHY53584.1| hypothetical protein HMPREF1120_01773 [Exophiala dermatitidis
NIH/UT8656]
Length = 271
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 72/170 (42%), Gaps = 18/170 (10%)
Query: 60 CYWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQ 119
Y +G T V Y + + +E PE I+V +P G E+ E ++ RTLQ
Sbjct: 19 TYTANNGQTIVAGVNYPVEVPYRSDEIPESTFIDVNLRPHNGVGMVKERHVEDLIMRTLQ 78
Query: 120 SICILTINPNTTTSVIIQV--VHDDGAL----------------LPCAINAACAALVDAG 161
+I + + P T + +QV V D +L L A+NA+ +DAG
Sbjct: 79 TIVLGDLTPRTMLQITLQVVSVESDESLPGGVKGGGQGETYLDMLASALNASVLGCLDAG 138
Query: 162 IPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPE 211
+ MK +A A + G ++ P ++ +K F + +VL E
Sbjct: 139 VQMKAVAGAALVGIDQEGRLVVGPGVVQRKKCTSLHVFAFTSDGKTVLME 188
>gi|357121840|ref|XP_003562625.1| PREDICTED: exosome complex component MTR3-like [Brachypodium
distachyon]
Length = 262
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 62/138 (44%), Gaps = 12/138 (8%)
Query: 66 GDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRT------GQIGKPEKEYEIILKRTLQ 119
G TKV+ +V+GP+ K + + T GQ G KEY +L + L+
Sbjct: 71 GKTKVIVSVFGPRESKKAMLYSDTGRLNCNVSYTTFATGIRGQ-GLDNKEYSEMLHKALE 129
Query: 120 SICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHL--AVAICCCSAE 177
+L P TT V V+ G+ LP I+ A AL DAGI M L +V++ C
Sbjct: 130 GAVMLDTFPKTTVDVFALVLESGGSDLPIIISCASLALADAGIMMYDLVTSVSVSCLGKN 189
Query: 178 SGYCILDPTKLEEQKMKG 195
I+DPT EE G
Sbjct: 190 ---VIIDPTSDEEAWQDG 204
>gi|268532254|ref|XP_002631255.1| C. briggsae CBR-CRN-5 protein [Caenorhabditis briggsae]
Length = 214
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 80/186 (43%), Gaps = 39/186 (20%)
Query: 13 QLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLA 72
+LR + C S L A GSA +SQG S C + G GD
Sbjct: 4 RLREMRCELSFLKNADGSACFSQG------------------STCIWASCSGPGD----- 40
Query: 73 AVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEI---ILKRTLQSICILTINPN 129
V+ KA N E ++++ ++ G + ++ + I++ TL L + P+
Sbjct: 41 -VHASKA------NEEAMTLDISYRANCG-----DNKFSVLNNIIQSTLAKAINLELFPH 88
Query: 130 TTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLE 189
T V I + DDG++ ++N AC AL+D G+P + + + + I+DPT +
Sbjct: 89 TGLVVTIHGIQDDGSMGAVSLNGACFALLDNGMPFETVFCGVLIVRVKDEL-IIDPTAKQ 147
Query: 190 EQKMKG 195
E G
Sbjct: 148 EAASTG 153
>gi|25152573|ref|NP_497279.2| Protein EXOS-4.2 [Caenorhabditis elegans]
gi|351064253|emb|CCD72537.1| Protein EXOS-4.2 [Caenorhabditis elegans]
Length = 241
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 5/139 (3%)
Query: 66 GDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILT 125
G+T+VLA + GP K E+ K +IE+ + ++ EY L + ++ +
Sbjct: 59 GNTRVLAQITGPDGDGKWEEDRAKITIELKGIEDSVKVA----EYRAQLASAVSAVIFAS 114
Query: 126 INPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDP 185
P + I V+ DDG +L A++A A+ +GI L ++ G C+ DP
Sbjct: 115 KYPGKVIEIEITVLSDDGGVLSTALSAVTLAISHSGIENMGLMASVHVAMNSDGECLTDP 174
Query: 186 TKLE-EQKMKGFAYLVFPN 203
+ E E + G + PN
Sbjct: 175 STSESEGAIGGVTFAFVPN 193
>gi|198466492|ref|XP_001354017.2| GA20773 [Drosophila pseudoobscura pseudoobscura]
gi|198150625|gb|EAL29754.2| GA20773 [Drosophila pseudoobscura pseudoobscura]
Length = 328
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 72/281 (25%), Positives = 109/281 (38%), Gaps = 63/281 (22%)
Query: 8 GRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGD 67
G+NP +L PL +L GSA ++ G+
Sbjct: 39 GKNPKKLSPL-LRAGVLTTVRGSA------------------------------YMEYGN 67
Query: 68 TKVLAAVYGPKA---GTKKNENPEKASIEVIWKP-RTGQIGK-PEKEYEI--ILKRTLQS 120
TKV+A V P T + N + V + TG++ PE+E + +L + L+
Sbjct: 68 TKVMAIVAPPHEMMRATARRMNMGVINCFVNFAAFATGELESVPEREKHLGSMLSKALEP 127
Query: 121 ICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGY 180
+ T N + + ++ DDG LL AIN ALV+ GI L A C
Sbjct: 128 VVCRTEFLNFQLDIRVLILDDDGCLLSTAINCCGVALVECGISTYDLVTASTACIYRDN- 186
Query: 181 CILDPTKLEEQKMK----GFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTH----- 231
L+PT EE+ ++ G A NS SS G P EHG+IT+ +
Sbjct: 187 VFLNPTAKEEELLRKHRGGHALAGSENS--------SSTTTGAPQEHGLITTASMDTFDQ 238
Query: 232 -------GAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKL 265
G +S Y L+ A + L +RR L +++
Sbjct: 239 LAQCQQCGYLSPGTYVKLLDYTLAINKSLRQIIRRVLTARI 279
>gi|156845783|ref|XP_001645781.1| hypothetical protein Kpol_1010p39 [Vanderwaltozyma polyspora DSM
70294]
gi|156116449|gb|EDO17923.1| hypothetical protein Kpol_1010p39 [Vanderwaltozyma polyspora DSM
70294]
Length = 246
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 81/200 (40%), Gaps = 41/200 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR N+LR CS + AH S S ++
Sbjct: 13 RLDGRRWNELRRFECSINT--HAHASDGSS---------------------------YLE 43
Query: 65 SGDTKVLAAVYGPKAGTKKNE-NPEKASIEVIWK-------PRTGQIGKPEK---EYEII 113
G+ K++ V GP+ +++ + KAS+ + R+ K E+ E +
Sbjct: 44 QGNNKIVTLVKGPQEPILRSQLDATKASLNITVNITKFSKMERSKSSHKNERRVLEMQTA 103
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
L RT + +L + P T + I V+ DG +L IN+ AL+D+GI M AI
Sbjct: 104 LVRTFEKNVMLHLYPRTLIDIEIHVLQQDGGILGSLINSITLALIDSGIAMYDYVSAISI 163
Query: 174 CSAESGYCILDPTKLEEQKM 193
++ +LD LEE M
Sbjct: 164 GLYDT-TPLLDVNTLEENAM 182
>gi|195166781|ref|XP_002024213.1| GL22907 [Drosophila persimilis]
gi|194107568|gb|EDW29611.1| GL22907 [Drosophila persimilis]
Length = 328
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 72/281 (25%), Positives = 109/281 (38%), Gaps = 63/281 (22%)
Query: 8 GRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGD 67
G+NP +L PL +L GSA ++ G+
Sbjct: 39 GKNPKKLSPL-LRAGVLTTVRGSA------------------------------YMEYGN 67
Query: 68 TKVLAAVYGPKA---GTKKNENPEKASIEVIWKP-RTGQIGK-PEKEYEI--ILKRTLQS 120
TKV+A V P T + N + V + TG++ PE+E + +L + L+
Sbjct: 68 TKVMAIVAPPHELMRATARRMNMGVINCFVNFAAFATGELESVPEREKHLGSMLSKALEP 127
Query: 121 ICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGY 180
+ T N + + ++ DDG LL AIN ALV+ GI L A C
Sbjct: 128 VVCRTEFLNFQLDIRVLILDDDGCLLSTAINCCGVALVECGISTYDLVTASTACIYRDN- 186
Query: 181 CILDPTKLEEQKMK----GFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTH----- 231
L+PT EE+ ++ G A NS SS G P EHG+IT+ +
Sbjct: 187 VFLNPTAKEEELLRKHRGGHALAGSENS--------SSTTTGAPQEHGLITTASMDTFDQ 238
Query: 232 -------GAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKL 265
G +S Y L+ A + L +RR L +++
Sbjct: 239 LAQCQQCGYLSPGTYVKLLDYTLAINKSLRQIIRRVLTARI 279
>gi|255076363|ref|XP_002501856.1| predicted protein [Micromonas sp. RCC299]
gi|226517120|gb|ACO63114.1| predicted protein [Micromonas sp. RCC299]
Length = 232
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 73/280 (26%), Positives = 114/280 (40%), Gaps = 63/280 (22%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFC 60
M + R DGR+ Q+RP+ ++ +A GSA
Sbjct: 1 MTIPREDGRSAEQMRPIFVKTGVISQAAGSA----------------------------- 31
Query: 61 YWVGSGDTKVLAAVYGPKAGTKKNENPE--KASIEVIWK--------PRTGQI--GKPEK 108
+V TKV+ VYGP+ G + E + ++V K PR G++ G E+
Sbjct: 32 -YVELDKTKVMCGVYGPRQGGPGIDKVEFDRGRLDVDVKLATFATSGPR-GKVAQGDAER 89
Query: 109 EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLA 168
E+ I+ R L + P TT V V+ +G+ L I AA AAL +AG+ M+ L
Sbjct: 90 EFSSIVHRALSGAVMTETFPKTTVDVFATVLEANGSELCATIAAASAALCEAGVAMRDL- 148
Query: 169 VAICCCSAESG--YCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGII 226
V+ C G +LDP + EE + L + + L E S ++
Sbjct: 149 VSACTGGGADGPNALLLDPARGEEAAAEAGVTLAY----MCRLGEASQ----------VV 194
Query: 227 TSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLP 266
+ T S+DD G A++ LR +L+S +P
Sbjct: 195 ATGTWDGESLDDAVQLAASG---CARVDAALREALRSSVP 231
>gi|365760630|gb|EHN02338.1| Rrp46p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 240
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 88/208 (42%), Gaps = 20/208 (9%)
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICIL 124
S DTK++ +V GP + E P + ++E+I +P G EK E L+ L +
Sbjct: 13 SQDTKIICSVTGPIEAKARQELPTQLALEIIVRPAKGVATTREKLLEDKLRAVLTPLIAR 72
Query: 125 TINPNTTTSVIIQVV---HDDGAL----LPCAINAACAALVDAGIPMKHLAVAI-CCCSA 176
P + Q++ D+ L C INAA LVDAGI M + +I
Sbjct: 73 YCYPRQLCQITCQILESGEDEPEFSLRELSCCINAAFLGLVDAGIAMNSMCASIPIAIMK 132
Query: 177 ESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSV 236
+S I +PT +++K + +SV V G + ++ ++G +
Sbjct: 133 DSNEIIANPTA---EQLK---------TSVSVHTLALEFVDGGNVIKNVLLLDSNGDFNE 180
Query: 237 DDYFHCLERGRAASAKLSDFLRRSLQSK 264
D F+ LE G +L LR+ + +
Sbjct: 181 DQLFNVLELGEQKCQELVQDLRKIIHGR 208
>gi|145592134|ref|YP_001154136.1| exosome complex exonuclease Rrp41 [Pyrobaculum arsenaticum DSM
13514]
gi|379003148|ref|YP_005258820.1| archaeal exosome-like complex exonuclease 1 [Pyrobaculum oguniense
TE7]
gi|254782535|sp|A4WM67.1|ECX1_PYRAR RecName: Full=Probable exosome complex exonuclease 1
gi|145283902|gb|ABP51484.1| ribosomal RNA-processing protein RRP41/SKI6 [Pyrobaculum
arsenaticum DSM 13514]
gi|375158601|gb|AFA38213.1| archaeal exosome-like complex exonuclease 1 [Pyrobaculum oguniense
TE7]
Length = 246
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 73/171 (42%), Gaps = 40/171 (23%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
RADGR P+Q+R + S ++ A GSA V
Sbjct: 14 RADGRLPDQMREVKISVGVVSNADGSA------------------------------MVS 43
Query: 65 SGDTKVLAAVYGPKAGTKKNEN-PEKASIEVIW---------KPRTGQIGKPEKEYEIIL 114
G T +AAVYGP+ ++ + P++ + V + + ++ + E E +L
Sbjct: 44 YGATTAVAAVYGPREMHPRHLSLPDRGVMRVRYHMAPFSTKDERKSPTPSRREIEISKVL 103
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMK 165
+ L+ +L P + V I+++ DG+ ++ AA AL DAGI M+
Sbjct: 104 REALEPAVLLEQYPRSRIDVFIEIIQADGSTRVASLTAASLALADAGIYMR 154
>gi|346971917|gb|EGY15369.1| exosome complex exonuclease RRP41 [Verticillium dahliae VdLs.17]
Length = 275
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/248 (25%), Positives = 95/248 (38%), Gaps = 52/248 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR N+LR L A GS+ +++ H
Sbjct: 14 RVDGRRWNELRRLQAQIRTQDAADGSS-------YLEIGH-------------------- 46
Query: 65 SGDTKVLAAVYGPK-------AGTKKNENPEKASIEV-----IWKPRTGQIGKPEKEYEI 112
TKV+ V GP AG + + SI V + + + G+ K E E
Sbjct: 47 ---TKVMCVVTGPTEPQRRGPAGGQSKDAAVNVSIVVAGFSSVDRRKYGRNDKRISELEA 103
Query: 113 ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAIC 172
+ + S + P+++ + + V+ DG+LL +NA ALVDAGIPM +A C
Sbjct: 104 TVSKAFASTLHTHLFPHSSIYISLHVLSQDGSLLAALLNATTLALVDAGIPMTDY-IAAC 162
Query: 173 CCSAESGYC--------ILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHG 224
+ S Y +LD EEQ++ +S V+ S VQ +E G
Sbjct: 163 TAGSTSTYAAADDGADPLLDLNTQEEQELPFLTAATLGDSDKVVVLVCESRVQASRLE-G 221
Query: 225 IITSVTHG 232
++ G
Sbjct: 222 LLAVAVDG 229
>gi|357622504|gb|EHJ73955.1| mRNA transport regulator 3 [Danaus plexippus]
Length = 548
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 63/139 (45%), Gaps = 10/139 (7%)
Query: 62 WVGSGDTKVLAAVYGPKAGTKKNENPEKASI--EVIWKP------RTGQI-GKPEKEYEI 112
++ TKV +V+ P+ +NE + EV + P R + E+ +
Sbjct: 69 YIELKRTKVACSVFDPREIVHQNEYSTLGQLYCEVKYAPFSCRGERKALVPDSDERALSV 128
Query: 113 ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAIC 172
LK+ L+ + PN + I ++ +DGA LP AINAA AL DA +PM + A
Sbjct: 129 ALKKALEPAVCRHLFPNYQIDIFIYILENDGACLPAAINAAGLALSDAAVPMYDIITA-S 187
Query: 173 CCSAESGYCILDPTKLEEQ 191
+ +DPT EEQ
Sbjct: 188 SLAISGDKVFVDPTDDEEQ 206
>gi|317029576|ref|XP_001391907.2| exosome complex endonuclease 1 [Aspergillus niger CBS 513.88]
gi|350635872|gb|EHA24233.1| hypothetical protein ASPNIDRAFT_39724 [Aspergillus niger ATCC 1015]
gi|358368844|dbj|GAA85460.1| exosome complex endonuclease 1/ribosomal RNA processing protein
[Aspergillus kawachii IFO 4308]
Length = 269
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 60/130 (46%), Gaps = 18/130 (13%)
Query: 62 WVGSGDTKVLAAVYGPKAGTKKNENPEKASIE---------------VIWKPRTGQIGKP 106
++ G+T +L +V+GP G + + A V K R G K
Sbjct: 42 YLAMGNTAILCSVHGPAEGRRGDATGGAAGSAGAVVEVDVNVAGFAGVDRKRRAGGSDKQ 101
Query: 107 EKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKH 166
IL+ QS + P++T S+ + V+ DG+LL A+NA ALVDAGIPM
Sbjct: 102 SSRVATILRSAFQSHLHTHLYPHSTISIHVSVLSSDGSLLAAAVNACTLALVDAGIPMPG 161
Query: 167 LAVAICCCSA 176
L +C C++
Sbjct: 162 L---LCGCTS 168
>gi|126459546|ref|YP_001055824.1| exosome complex exonuclease Rrp41 [Pyrobaculum calidifontis JCM
11548]
gi|254782536|sp|A3MUP1.1|ECX1_PYRCJ RecName: Full=Probable exosome complex exonuclease 1
gi|126249267|gb|ABO08358.1| ribosomal RNA-processing protein RRP41/SKI6 [Pyrobaculum
calidifontis JCM 11548]
Length = 246
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 84/201 (41%), Gaps = 41/201 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
RADGR P+Q+R + + A GSA V
Sbjct: 14 RADGRAPDQMREVQIQVGTVSNADGSAV------------------------------VS 43
Query: 65 SGDTKVLAAVYGPKAGTKKNEN-PEKASIEVIW---------KPRTGQIGKPEKEYEIIL 114
G T +AAVYGP+ ++ + P++ + V + + ++ + E E +L
Sbjct: 44 YGATTAVAAVYGPREMHPRHLSLPDRGVMRVRYHMAPFSTKDERKSPTPSRREIEISKVL 103
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
+ L+ +L P + V I+++ DG+ ++ AA AL DAGI M+ L V +
Sbjct: 104 REALEPAVMLEQYPRSRIDVFIEILQADGSTRVASLTAASLALADAGIYMRDLVVGVSVG 163
Query: 175 SAESGYCILDPTKLEEQKMKG 195
+ G +LD LE+ +G
Sbjct: 164 LVD-GTVVLDLNGLEDNYGEG 183
>gi|71747850|ref|XP_822980.1| exosome complex exonuclease RRP41A [Trypanosoma brucei TREU927]
gi|70832648|gb|EAN78152.1| exosome complex exonuclease RRP41A [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
Length = 252
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 73/173 (42%), Gaps = 40/173 (23%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR PN+ R LA F S C C V
Sbjct: 14 RLDGRRPNEPRRLALE------------------------------FGKISGCDGCCTVV 43
Query: 65 SGDTKVLAAVYGPKAGTKKNE---NPEKASIEVIWKPRTGQIGKPEKEY----EIILKRT 117
SG + V A VYGP+ + + E N + +V+ G+ + ++ Y E I
Sbjct: 44 SGLSHVCATVYGPREVSNRLEGKYNEVTITCDVVVAAFAGERRREQQRYSRLSEDISASV 103
Query: 118 L---QSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHL 167
L +S+ +L+ PN+ + I+V+ DG+ INAAC AL+DA I MK +
Sbjct: 104 LDVARSVVLLSQYPNSQIHICIEVLKQDGSDKAACINAACLALIDASIAMKDV 156
>gi|154295932|ref|XP_001548399.1| hypothetical protein BC1G_13119 [Botryotinia fuckeliana B05.10]
gi|347441428|emb|CCD34349.1| similar to exosome complex exonuclease RRP41 [Botryotinia
fuckeliana]
Length = 261
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 76/191 (39%), Gaps = 50/191 (26%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR N+LR L S + GS+ ++
Sbjct: 14 RLDGRRWNELRRLTAQISTQPSSDGSS------------------------------YLS 43
Query: 65 SGDTKVLAAVYGP--------KAGTKKNENPEKASIEV---------IWKPRTGQIGKPE 107
G+T+VL V GP G N EKA + V + + + G+ K
Sbjct: 44 MGNTQVLCTVTGPCDPSKLRSIGGGGSNNAGEKAEVRVEISFAGFAGVDRKKYGRNDKRI 103
Query: 108 KEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHL 167
+E L T + T+ ++T + + ++ DG+LL INA+ AL+DAGIPM
Sbjct: 104 QELSNTLSTTFTPHLLTTLTSHSTILISLHILSLDGSLLSALINASTLALIDAGIPMPSY 163
Query: 168 AVAICCCSAES 178
IC C+A S
Sbjct: 164 ---ICACTAGS 171
>gi|85112835|ref|XP_964421.1| hypothetical protein NCU03268 [Neurospora crassa OR74A]
gi|28926202|gb|EAA35185.1| predicted protein [Neurospora crassa OR74A]
Length = 251
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 91/220 (41%), Gaps = 20/220 (9%)
Query: 70 VLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPN 129
V A+V GP +++E+ +A ++VI +P G G E+ E IL+ +L I ++ P
Sbjct: 29 VTASVNGPIEAQRRDEHAYEAHVDVIVRPSAGVGGTRERHLEFILQSSLSQIILVKNFPR 88
Query: 130 TTTSVIIQVVHD---------------DGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
+ +++QV + ++P A AL+ A +PMK A +
Sbjct: 89 SVIQIVLQVESTPENAYVNTKLVQASLNLPIIPALFQTAVLALLSAAVPMKATATSTVVA 148
Query: 175 SAE---SGYCILDPTKLEEQKMKGFAYLVFP--NSILSVLPEGSSLVQGEPMEHGIITSV 229
S + DP+ + ++ L F + +L EG V+ + +
Sbjct: 149 VVSDDGSKKIVADPSPQDIREATSLHVLAFTSHDELLLSESEGDFTVKEWDGVYENAQKI 208
Query: 230 THGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGDL 269
S D + A+S + FLR +L++K+ DL
Sbjct: 209 CCQTASKQDGIDMVLDDDASSPDMRHFLRSTLETKVASDL 248
>gi|444322810|ref|XP_004182046.1| hypothetical protein TBLA_0H02430 [Tetrapisispora blattae CBS 6284]
gi|387515092|emb|CCH62527.1| hypothetical protein TBLA_0H02430 [Tetrapisispora blattae CBS 6284]
Length = 245
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 72/171 (42%), Gaps = 40/171 (23%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR N+LR CS + AH S S ++
Sbjct: 13 RQDGRRWNELRRFDCSINT--HAHTSDGSS---------------------------YLE 43
Query: 65 SGDTKVLAAVYGPKAGTKKNE-NPEKASIEVIWK-------PRTGQIGKPEK---EYEII 113
G+ KV+ V GP+ K++ + KA++ + R+ K EK E + I
Sbjct: 44 QGNNKVITIVKGPQEPPLKSQLDQTKATLNISLNITPFSKFERSKTQHKNEKRILELQTI 103
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPM 164
L +T + ++ + P T + I V+ DG+LL C IN AL+DAGI +
Sbjct: 104 LIKTFKKNILMHLYPRTLIDIQIHVLQQDGSLLSCLINGITLALIDAGIAI 154
>gi|344231786|gb|EGV63668.1| ribosomal protein S5 domain 2-like protein [Candida tenuis ATCC
10573]
gi|344231787|gb|EGV63669.1| hypothetical protein CANTEDRAFT_114736 [Candida tenuis ATCC 10573]
Length = 242
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 81/201 (40%), Gaps = 44/201 (21%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR N+LR C + H ++S + V
Sbjct: 13 RVDGRRWNELRRFECKIN----THPNSSDGSSY-------------------------VE 43
Query: 65 SGDTKVLAAVYGP-KAGTKKNENPEKASIEV---------IWKPRTGQIGKPEKEYEIIL 114
G++K++ V GP + + + KA+IEV + + + K E + +
Sbjct: 44 QGNSKIICMVQGPMEPKLRSQMDVNKANIEVSISIAHFSTFHRKKRSKNEKRIVELKTAI 103
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
+ T ++ I + P T + IQV+ DG LL NAA AL+DAGI M + C
Sbjct: 104 ENTFENSIISHLYPRTFIQINIQVLAQDGGLLAGMANAATLALIDAGIAMYDY---VSCV 160
Query: 175 SA--ESGYCILDPTKLEEQKM 193
SA Y +LD LEE M
Sbjct: 161 SAGLYDQYPLLDLNTLEENDM 181
>gi|299750699|ref|XP_001829767.2| exosome component Rrp46 [Coprinopsis cinerea okayama7#130]
gi|298409029|gb|EAU91989.2| exosome component Rrp46 [Coprinopsis cinerea okayama7#130]
Length = 238
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 65/138 (47%), Gaps = 9/138 (6%)
Query: 64 GSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICI 123
G G++ LA+V GP E +A+ EV +P + K +++ L I
Sbjct: 34 GFGNSAALASVSGPIEVRLAAEQSSQATFEVHVRPFSNVPATDSKSQATVIRSALTPSLI 93
Query: 124 LTINPNTTTSVIIQVVHD-------DGALLPCAINAACAALVDAG-IPMKHLAVAICCCS 175
LT NP T +++Q + DG L INA+ AL++AG +PM+ + A+
Sbjct: 94 LTKNPRTLVQLVVQNLSSASTNTERDG-LTAAMINASTLALLNAGSLPMRGVVCAVAVGR 152
Query: 176 AESGYCILDPTKLEEQKM 193
+G ++DPT E + +
Sbjct: 153 TSNGEFLVDPTAEEAKDI 170
>gi|326521482|dbj|BAK00317.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 262
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 62/138 (44%), Gaps = 12/138 (8%)
Query: 66 GDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRT------GQIGKPEKEYEIILKRTLQ 119
G TKV+ +V+GP+ K + + T GQ G KEY +L + L+
Sbjct: 71 GKTKVIVSVFGPRESKKAMLYSDTGRLNCSVSYTTFATGIRGQ-GLENKEYSGMLHKALE 129
Query: 120 SICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHL--AVAICCCSAE 177
+L P TT V V+ G+ LP I+ A AL DAGI M L +V++ C
Sbjct: 130 GAVMLHTFPKTTVDVFALVLESGGSDLPIIISCASLALADAGIMMYDLVTSVSVSCLGKN 189
Query: 178 SGYCILDPTKLEEQKMKG 195
I+DPT EE G
Sbjct: 190 ---VIIDPTSDEEAWQDG 204
>gi|121710390|ref|XP_001272811.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
putative [Aspergillus clavatus NRRL 1]
gi|119400961|gb|EAW11385.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
putative [Aspergillus clavatus NRRL 1]
Length = 269
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 75/190 (39%), Gaps = 47/190 (24%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR N+LR L+ S + GS+ ++
Sbjct: 15 RLDGRRWNELRLLSAQISTNPASSGSS------------------------------FLS 44
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIE---------------VIWKPRTGQIGKPEKE 109
G+T ++ +V+GP G + + A V K R G +
Sbjct: 45 MGNTSIMCSVHGPAEGKRGDATGGAAGSAGAIVEVDVNVAGFAGVDRKRRAGGSDRQSSR 104
Query: 110 YEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAV 169
IL+ QS + P++T S+ + V+ DG+LL A+NA ALVDAGIPM L
Sbjct: 105 IATILRSAFQSHLHTHLYPHSTISIHVSVLSSDGSLLAAAVNACTLALVDAGIPMPGLLS 164
Query: 170 AICCCSAESG 179
A C S SG
Sbjct: 165 A--CTSGMSG 172
>gi|66472734|ref|NP_001018322.1| exosome complex component MTR3 [Danio rerio]
gi|123905166|sp|Q6P0I8.2|EXOS6_DANRE RecName: Full=Exosome complex component MTR3; AltName: Full=Exosome
component 6; AltName: Full=mRNA transport regulator 3
homolog
gi|63101434|gb|AAH95173.1| Exosome component 6 [Danio rerio]
gi|68262418|gb|AAH65602.2| Exosome component 6 [Danio rerio]
gi|182890526|gb|AAI64622.1| Exosc6 protein [Danio rerio]
Length = 271
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 79/191 (41%), Gaps = 40/191 (20%)
Query: 9 RNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDT 68
R +RP+ C ++ +A GSA ++ +G+T
Sbjct: 37 RGNGDVRPVFARCGLVSQAKGSA------------------------------YIEAGNT 66
Query: 69 KVLAAVYGPKAGTKKNENPEKASIEVI---WKP-----RTGQI-GKPEKEYEIILKRTLQ 119
K++ +VYGPK +++E K V P R I G E++ L +L+
Sbjct: 67 KIICSVYGPKETERRDETDMKTGRLVCDFRLAPFSCVKRGAWIQGSEERDLSATLMESLR 126
Query: 120 SICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESG 179
L P + V + V+ +DG++L A+ A AL DAGI M + + C
Sbjct: 127 PGVCLHRYPRSQIDVNVMVLENDGSVLAHAVTCASMALADAGIEMYDIVLG-CTLRQSGN 185
Query: 180 YCILDPTKLEE 190
C++DP+ EE
Sbjct: 186 ACLVDPSYAEE 196
>gi|407854103|gb|EKG06647.1| ribosomal RNA processing protein 41B, putative,3' exoribonuclease,
putative [Trypanosoma cruzi]
Length = 285
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 58/121 (47%), Gaps = 19/121 (15%)
Query: 62 WVGSGDTKVLAAVYGPKAGTKKNENPEKASIEV-----IWKPRTG------------QIG 104
W G T V+AAV GP A + E+ K ++V + PR G +
Sbjct: 34 WYSQGLTTVVAAVNGPVAA--RQEDYRKCGVQVYVNRAVRIPRAGGTDRLCVEEQRVEQR 91
Query: 105 KPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPM 164
+ + E E+ L ++Q++ L P V + ++ DDGALL A NA AL+DAG+P
Sbjct: 92 RMDAEVEMFLTASIQAVVRLDQFPRCVLEVHVTILADDGALLSVATNALMCALLDAGVPC 151
Query: 165 K 165
+
Sbjct: 152 R 152
>gi|255943151|ref|XP_002562344.1| Pc18g05170 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211587077|emb|CAP94741.1| Pc18g05170 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 265
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 60/128 (46%), Gaps = 16/128 (12%)
Query: 62 WVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVI-------------WKPRTGQIGKPEK 108
++ G+T ++ +V+GP G + + + V+ K R G +
Sbjct: 42 YLSMGNTSIMCSVHGPAEGRRGDGGSAGSGHAVVEVDVNVAGFAGVDRKRRAGGSDRQSS 101
Query: 109 EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLA 168
L+ QS + P++T S+ + V+ DG+LL A+NA ALVDAGIPM L
Sbjct: 102 RIATTLRSAFQSHLHTYLYPHSTISIHVSVLSADGSLLAAALNACTLALVDAGIPMPGL- 160
Query: 169 VAICCCSA 176
+C C++
Sbjct: 161 --LCGCTS 166
>gi|225435349|ref|XP_002285257.1| PREDICTED: exosome complex component MTR3 [Vitis vinifera]
gi|147834996|emb|CAN61380.1| hypothetical protein VITISV_037546 [Vitis vinifera]
gi|297746275|emb|CBI16331.3| unnamed protein product [Vitis vinifera]
Length = 254
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 98/264 (37%), Gaps = 55/264 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +Q RP ++ A GSA + F
Sbjct: 32 RPDGRGFHQCRPAFLKTGAVNAASGSA-------------YAEF---------------- 62
Query: 65 SGDTKVLAAVYGPKAGTKKNENPE------KASIEVIWKPRTGQIGKPEKEYEIILKRTL 118
G+TKV+ +V+GP+ K S P GQ G K Y +L + L
Sbjct: 63 -GNTKVIVSVFGPRESKKAMAYSGTGRLNCNVSYTTFAMPIRGQ-GSDHKGYSSMLHKAL 120
Query: 119 QSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAES 178
+ I+ P TT V V+ G+ LP I+ A AL DAGI M L VA S
Sbjct: 121 EGAIIVESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMMYDL-VASVSVSCLG 179
Query: 179 GYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDD 238
++DP LEE+ + +GS L+ P + + +G S
Sbjct: 180 KNLVIDPI-LEEESYQ----------------DGSLLITCMPSRNEVTQLTVNGEWSTPR 222
Query: 239 YFHCLERGRAASAKLSDFLRRSLQ 262
++ A +KL+ +R L+
Sbjct: 223 VHEAMQICLEACSKLAKIIRSCLK 246
>gi|158300785|ref|XP_552338.3| AGAP011906-PA [Anopheles gambiae str. PEST]
gi|157013328|gb|EAL38841.3| AGAP011906-PA [Anopheles gambiae str. PEST]
Length = 308
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 75/175 (42%), Gaps = 10/175 (5%)
Query: 24 LHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLAAVYGPKAGTKK 83
L A G + R +Q S Y+ + V ++ Y V G+TKV+ +V+ P+ K+
Sbjct: 33 LQEALGKDGKRKDGRRLQESRKYYAKIGVVSTAKGSAY-VELGNTKVIVSVFDPREIPKQ 91
Query: 84 NENPEKASI--EVIWKP------RTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVI 135
N+ E + ++ + P +T Q E+ L L + PN V
Sbjct: 92 NKFCELGELFCDLKFSPFAPAVRKTHQTDARERSMTAALTSALNPSVCRHLFPNLQIDVF 151
Query: 136 IQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 190
V+ DDG+ L AI AA AL DA +PM + A ++DPT EE
Sbjct: 152 ANVLEDDGSALAVAITAAGLALGDACVPMFDIVTA-ATAGVLGDRVVMDPTAEEE 205
>gi|365992048|ref|XP_003672852.1| hypothetical protein NDAI_0L01240 [Naumovozyma dairenensis CBS 421]
gi|410729931|ref|XP_003671144.2| hypothetical protein NDAI_0G01250 [Naumovozyma dairenensis CBS 421]
gi|401779963|emb|CCD25901.2| hypothetical protein NDAI_0G01250 [Naumovozyma dairenensis CBS 421]
Length = 225
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 88/211 (41%), Gaps = 19/211 (9%)
Query: 62 WVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSI 121
+ S TK+ +V GP + E P + ++E+I +P G EK E L+ +
Sbjct: 18 QIQSQKTKIFCSVTGPIEPKARQELPTQLALEIIVRPSLGVPNTREKLIEDKLRAVFTPL 77
Query: 122 CILTINPNTTTSVIIQVVHDDGA-------LLPCAINAACAALVDAGIPMKHLAVAICCC 174
+ P + +Q++ + + +INA AL+DAGI + + AI
Sbjct: 78 ITRYLYPRQLCQITLQILSSGESEQEFTQREVANSINATLLALIDAGIALNSMCAAISLA 137
Query: 175 SAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAM 234
+ I+DP + + K L L E S++V+ ++ ++G
Sbjct: 138 ISSDDKLIMDPNDEQLKAAKSVHVLALE------LVESSTVVK------NVLLLDSYGDF 185
Query: 235 SVDDYFHCLERGRAASAKLSDFLRRSLQSKL 265
+ F LE+G + KL +R ++SK+
Sbjct: 186 NEKQLFDILEQGEISLLKLGKEIRSIVESKI 216
>gi|297805692|ref|XP_002870730.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297316566|gb|EFH46989.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 84
Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/34 (70%), Positives = 30/34 (88%)
Query: 105 KPEKEYEIILKRTLQSICILTINPNTTTSVIIQV 138
K E+EY+ ILKRTLQSIC+LT+ PN+T SVIIQ+
Sbjct: 51 KVEREYKTILKRTLQSICVLTVVPNSTASVIIQI 84
>gi|294893125|ref|XP_002774343.1| Exosome complex exonuclease RRP46, putative [Perkinsus marinus ATCC
50983]
gi|239879681|gb|EER06159.1| Exosome complex exonuclease RRP46, putative [Perkinsus marinus ATCC
50983]
Length = 258
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 84/197 (42%), Gaps = 44/197 (22%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR + +RP +L + GSA +G
Sbjct: 26 RIDGRECSMMRPPTLELGLLPQKDGSA------------------------------RLG 55
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKAS-----IEVIWKPRTGQIGKPEKEYEIILKRTLQ 119
GDT+VL V GP +N P S ++V + +G +K E L + +
Sbjct: 56 FGDTEVLVGVNGPV----ENRFPLGVSTPGYPLDVTVRRASGMPTAEDKSVEYQLTKFIN 111
Query: 120 SICILTINP-NTTTSVIIQVVHDDGALLPCAINAACAALVDAG-IPMKHLAVAICCCSA- 176
+I + P NT +V ++V+++DG+LL NAA AL+DAG IP++ A A
Sbjct: 112 TIIDTHLLPGNTMVTVAVEVMNNDGSLLSTIFNAAILALLDAGSIPLRGTAFAAALGKRY 171
Query: 177 -ESGYCIL-DPTKLEEQ 191
G IL DP + EE+
Sbjct: 172 HRGGTQILVDPDQSEEE 188
>gi|424819350|ref|ZP_18244459.1| 3' exoribonuclease [Candidatus Parvarchaeum acidiphilum
ARMAN-4_'5-way FS']
gi|269986356|gb|EEZ92654.1| 3' exoribonuclease [Candidatus Parvarchaeum acidiphilum ARMAN-4]
gi|326422442|gb|EGD71841.1| 3' exoribonuclease [Candidatus Parvarchaeum acidiphilum
ARMAN-4_'5-way FS']
Length = 235
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 63/276 (22%), Positives = 108/276 (39%), Gaps = 58/276 (21%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFC 60
M +R D R ++LRP+ I+ A GSA +
Sbjct: 1 MYEERFDKRKFDELRPMEAETGIIPNAKGSARFK-------------------------- 34
Query: 61 YWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIW---------KPRTGQIGKPEKEYE 111
G+T+ +AAVYGP+ K + EK + +I P + G ++ E
Sbjct: 35 ----IGNTEAIAAVYGPE--EVKPRHIEKVNKGIIVCKYDMLPFSVPDRARPGMDRRDIE 88
Query: 112 I--ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAV 169
I ++ L IL P +V I + D ++ AA A DAG+PM+ L
Sbjct: 89 ISQVITNALNRAVILEEMPRAMVNVRIYITQADAGTRCASLTAASMACADAGLPMRDLVA 148
Query: 170 AICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSV 229
A+ C LD TK EE +G A V P ++L P ++ I+
Sbjct: 149 AVAAGKIGDSIC-LDLTKEEEDFHEGGATDV-PIALL-------------PSKNEIVLLQ 193
Query: 230 THGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKL 265
G ++ ++ +E G+ + ++ + + +L+ +
Sbjct: 194 LDGKVTREELKKVIEMGKKGAMEIYELEKAALKRRF 229
>gi|326514708|dbj|BAJ99715.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 262
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 62/138 (44%), Gaps = 12/138 (8%)
Query: 66 GDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRT------GQIGKPEKEYEIILKRTLQ 119
G TKV+ +V+GP+ K + + T GQ G KEY +L + L+
Sbjct: 71 GKTKVIVSVFGPRESKKAMLYSDTGRLNCSVSYTTFATGIRGQ-GLENKEYSGMLHKALE 129
Query: 120 SICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHL--AVAICCCSAE 177
+L P TT V V+ G+ LP I+ A AL DAGI M L +V++ C
Sbjct: 130 GAVMLHTFPKTTVDVFALVLESGGSDLPIIISCASLALADAGIMMYDLVTSVSVSCLGKN 189
Query: 178 SGYCILDPTKLEEQKMKG 195
I+DPT EE G
Sbjct: 190 ---VIIDPTSDEEAWQDG 204
>gi|339248287|ref|XP_003375777.1| DEAD-box helicase 1 [Trichinella spiralis]
gi|316970810|gb|EFV54682.1| DEAD-box helicase 1 [Trichinella spiralis]
Length = 714
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 66/145 (45%), Gaps = 7/145 (4%)
Query: 53 FTSKCYFCYWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEV----IWKPRTGQIGKPEK 108
+ C V T +L +V+GP + P+ A ++V + K G +
Sbjct: 506 YVEDCTGSCLVSKRGTTLLISVHGPTDVKASKQLPDSAVVQVHLTTVSKDEIGGRSSIDS 565
Query: 109 -EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHL 167
+ + L+ QSI ++ + P ++++Q + DG + A+N C AL+++ +PM +
Sbjct: 566 GQMTLFLQNICQSIILVKLLPKRLITIVVQELESDGCFMEVAVNGLCIALLESALPMNDM 625
Query: 168 --AVAICCCSAESGYCILDPTKLEE 190
A + SG +L+PT EE
Sbjct: 626 FAASTLAYYGGASGQILLNPTAKEE 650
>gi|448113411|ref|XP_004202344.1| Piso0_001836 [Millerozyma farinosa CBS 7064]
gi|359465333|emb|CCE89038.1| Piso0_001836 [Millerozyma farinosa CBS 7064]
Length = 234
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 61/132 (46%), Gaps = 16/132 (12%)
Query: 63 VGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSIC 122
V G TK++A+V GP + E P AS+E+I +P G EK E L+ LQ++
Sbjct: 19 VEIGRTKLVASVSGPIEPRSRQELPNSASLEIIVRPAVGVSTTREKLIEDKLRSLLQNVI 78
Query: 123 ILTINPNTTTSVIIQ-VVHDD---------------GALLPCAINAACAALVDAGIPMKH 166
I P ++IQ +V +D L AINA ALVDA I + +
Sbjct: 79 IRHKYPRQLIQIVIQFLVTEDTNNYSITESQKQKLTSIELNAAINACYFALVDANIALYY 138
Query: 167 LAVAICCCSAES 178
++C C+ S
Sbjct: 139 SFSSVCICANSS 150
>gi|294889655|ref|XP_002772906.1| Exosome complex exonuclease RRP46, putative [Perkinsus marinus ATCC
50983]
gi|239877486|gb|EER04722.1| Exosome complex exonuclease RRP46, putative [Perkinsus marinus ATCC
50983]
Length = 258
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 84/197 (42%), Gaps = 44/197 (22%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR + +RP +L + GSA +G
Sbjct: 26 RIDGRECSMMRPPTLELGLLPQKDGSA------------------------------RLG 55
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKAS-----IEVIWKPRTGQIGKPEKEYEIILKRTLQ 119
GDT+VL V GP +N P S ++V + +G +K E L + +
Sbjct: 56 FGDTEVLVGVNGPV----ENRFPLGVSTPGYPLDVTVRRASGMPTAEDKSVEYQLTKFIN 111
Query: 120 SICILTINP-NTTTSVIIQVVHDDGALLPCAINAACAALVDAG-IPMKHLAVAICCCSA- 176
+I + P NT +V ++V+++DG+LL NAA AL+DAG IP++ A A
Sbjct: 112 TIIDAHLLPGNTMVTVAVEVMNNDGSLLSTIFNAAILALLDAGSIPLRGTAFAAALGKRY 171
Query: 177 -ESGYCIL-DPTKLEEQ 191
G IL DP + EE+
Sbjct: 172 HRGGTQILVDPDQSEEE 188
>gi|67526709|ref|XP_661416.1| hypothetical protein AN3812.2 [Aspergillus nidulans FGSC A4]
gi|40740830|gb|EAA60020.1| hypothetical protein AN3812.2 [Aspergillus nidulans FGSC A4]
gi|259481631|tpe|CBF75330.1| TPA: exosome complex endonuclease 1/ribosomal RNA processing
protein, putative (AFU_orthologue; AFUA_2G03740)
[Aspergillus nidulans FGSC A4]
Length = 265
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 59/130 (45%), Gaps = 18/130 (13%)
Query: 62 WVGSGDTKVLAAVYGPKAGTKKNENPEKAS---------------IEVIWKPRTGQIGKP 106
++ G+T +L +V+GP G + + A V K R G +
Sbjct: 42 YLAMGNTTILCSVHGPAEGRRGDATGGSAGSSGAVVEVDVNIAGFASVDRKRRAGGSDRQ 101
Query: 107 EKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKH 166
L+ QS + P++T S+ + V+ DG++L A+NA ALVDAGIPM
Sbjct: 102 SGRIASTLRSAFQSHLHTYLYPHSTISIHVSVLSSDGSVLAAAVNACTLALVDAGIPMPG 161
Query: 167 LAVAICCCSA 176
L +C C+A
Sbjct: 162 L---LCGCTA 168
>gi|440469501|gb|ELQ38610.1| exosome complex exonuclease RRP41 [Magnaporthe oryzae Y34]
gi|440482243|gb|ELQ62753.1| exosome complex exonuclease RRP41 [Magnaporthe oryzae P131]
Length = 280
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 101/258 (39%), Gaps = 26/258 (10%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR N+LR C I +A + G +++ H + V T
Sbjct: 14 RVDGRRWNELRR--CHAQIRTQA-----AADGSSYLEMGHTK--VMCVVTGPSEAAPGQR 64
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEV-----IWKPRTGQIGKPEKEYEIILKRTLQ 119
+ A G G + E SI V + + + G+ K +E + + L
Sbjct: 65 RTGVNITATATGGGQGAQSREAEVVVSIVVAGFSSVDRKKRGRGDKRIQELQATVSHALS 124
Query: 120 SICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESG 179
+ + ++T + + V+ DG+LL INAA A VDAGIPM VA C + S
Sbjct: 125 ATLHTHLFQHSTITFSLHVLSQDGSLLAALINAATLAAVDAGIPMADYVVA-CSAGSTSS 183
Query: 180 YC--------ILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTH 231
Y +LD + EE ++ G + V+ S VQ +E G++
Sbjct: 184 YAAADESADPLLDLNQQEETELPGLTAATLGATDRVVVLSCESRVQASRLE-GMLAVAVD 242
Query: 232 GAMSVDDYFHCL--ERGR 247
G V + + ERGR
Sbjct: 243 GCKQVREILDRVVKERGR 260
>gi|374325948|ref|YP_005084148.1| exosome complex exonuclease Rrp41 [Pyrobaculum sp. 1860]
gi|356641217|gb|AET31896.1| exosome complex exonuclease Rrp41 [Pyrobaculum sp. 1860]
Length = 224
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 69/143 (48%), Gaps = 11/143 (7%)
Query: 63 VGSGDTKVLAAVYGPKAGTKKNEN-PEKASIEVIW---------KPRTGQIGKPEKEYEI 112
V G T +AAVYGP+ ++ + P++ + V + + ++ + E E
Sbjct: 20 VSYGTTTAVAAVYGPREMHPRHLSLPDRGVMRVRYHMAPFSTKDERKSPTPSRREIEISK 79
Query: 113 ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAIC 172
+L+ L+ +L P + V ++++ DG+ ++ AA AL DAGI M+ L + +
Sbjct: 80 VLREALEPAIMLEQYPRSRIDVFVEILQADGSTRVASLTAASLALADAGIYMRDLVIGVS 139
Query: 173 CCSAESGYCILDPTKLEEQKMKG 195
+ G +LD LE+Q +G
Sbjct: 140 VGLVD-GTVVLDLNGLEDQYGEG 161
>gi|350296389|gb|EGZ77366.1| hypothetical protein NEUTE2DRAFT_100177 [Neurospora tetrasperma
FGSC 2509]
Length = 251
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 91/220 (41%), Gaps = 20/220 (9%)
Query: 70 VLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPN 129
V A+V GP +++E+ +A ++VI +P G G E+ E IL+ +L I ++ P
Sbjct: 29 VTASVNGPIEAQRRDEHAYEAHVDVIVRPSAGVGGTRERHLEFILQSSLSQIILVKNFPR 88
Query: 130 TTTSVIIQVVHD---------------DGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
+ +++QV + ++P A AL+ A +PMK A +
Sbjct: 89 SVIQIVLQVESTPENAYVNTKLVQASLNLPIIPALFQTAILALLSAAVPMKATATSTVVA 148
Query: 175 SAE---SGYCILDPTKLEEQKMKGFAYLVFP--NSILSVLPEGSSLVQGEPMEHGIITSV 229
S + DP+ + ++ L F + +L EG V+ + +
Sbjct: 149 VVSDDGSKKIVADPSPKDIREATSLHVLAFTSHDELLLSESEGDFTVKEWDGVYENAQKI 208
Query: 230 THGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGDL 269
S D + A+S + FLR +L++K+ DL
Sbjct: 209 CCQTASKQDGIDMVLDDDASSPDMRHFLRSTLETKVASDL 248
>gi|343473099|emb|CCD14915.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 255
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 85/224 (37%), Gaps = 55/224 (24%)
Query: 3 VDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYW 62
V R DGR P ++R S L + GS +SQG
Sbjct: 4 VTRRDGRGPCEMRGKELRASDLSQFDGSVWYSQGL------------------------- 38
Query: 63 VGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPR------TGQIGKPEK-------- 108
T V A+ GP A ++N ++ V R T ++ EK
Sbjct: 39 -----TAVCVAINGPTAARQENYRRCTLNVRVSRMSRIPPAGGTDRLAVMEKRERQQRAD 93
Query: 109 -EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHL 167
E E L +++ L P V + V+ DDGALL A NA AL+DAG+P
Sbjct: 94 GEMEQFLAGLAEAVVQLDRFPRCVLEVNVMVLMDDGALLAVAANAMMCALLDAGVPCHST 153
Query: 168 AVAIC---CCSA-----ESGYCILDPTKLEE--QKMKGFAYLVF 201
A+ C A E+ +LDPT EE +++ +A F
Sbjct: 154 VAAVSLLLCVPAKTEDEETPVLLLDPTAAEESTDEVRSYAAATF 197
>gi|389623701|ref|XP_003709504.1| exosome complex exonuclease RRP41 [Magnaporthe oryzae 70-15]
gi|351649033|gb|EHA56892.1| exosome complex exonuclease RRP41 [Magnaporthe oryzae 70-15]
Length = 280
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 101/258 (39%), Gaps = 26/258 (10%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR N+LR C I +A + G +++ H + V T
Sbjct: 14 RVDGRRWNELRR--CHAQIRTQA-----AADGSSYLEMGHTK--VMCVVTGPSEAAPGQR 64
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEV-----IWKPRTGQIGKPEKEYEIILKRTLQ 119
+ A G G + E SI V + + + G+ K +E + + L
Sbjct: 65 RTGVNITATATGGGQGAQSKEAEVVVSIVVAGFSSVDRKKRGRGDKRIQELQATVSHALS 124
Query: 120 SICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESG 179
+ + ++T + + V+ DG+LL INAA A VDAGIPM VA C + S
Sbjct: 125 ATLHTHLFQHSTITFSLHVLSQDGSLLAALINAATLAAVDAGIPMADYVVA-CSAGSTSS 183
Query: 180 YC--------ILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTH 231
Y +LD + EE ++ G + V+ S VQ +E G++
Sbjct: 184 YAAADESADPLLDLNQQEETELPGLTAATLGATDRVVVLSCESRVQASRLE-GMLAVAVD 242
Query: 232 GAMSVDDYFHCL--ERGR 247
G V + + ERGR
Sbjct: 243 GCKQVREILDRVVKERGR 260
>gi|297537320|ref|YP_003673089.1| polyribonucleotide nucleotidyltransferase [Methylotenera versatilis
301]
gi|297256667|gb|ADI28512.1| polyribonucleotide nucleotidyltransferase [Methylotenera versatilis
301]
Length = 709
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 81/184 (44%), Gaps = 35/184 (19%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR+ +RP++ +L R HGSA +++G ++ +G
Sbjct: 316 RIDGRDTRTVRPISIRTGVLPRTHGSALFTRG-----------------ETQALVVATLG 358
Query: 65 SG-DTKVLAAVYGPKAGTKKNENPEKASIEVIWKP----RTGQIGKPEKEYEI----ILK 115
+G D +V+ A+ G E ++ + P TG++G P K EI + K
Sbjct: 359 TGRDEQVIDALQG--------EFKDRFMLHYNMPPYATGETGRVGTP-KRREIGHGRLAK 409
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
R+L + + + T V+ ++ +G+ ++ C AL+DAG+PMK L I
Sbjct: 410 RSLIAALPDQADFDYTMRVVSEITESNGSSSMASVCGGCLALMDAGVPMKSLVAGIAMGL 469
Query: 176 AESG 179
+ G
Sbjct: 470 IKEG 473
>gi|367018248|ref|XP_003658409.1| hypothetical protein MYCTH_2294138 [Myceliophthora thermophila ATCC
42464]
gi|347005676|gb|AEO53164.1| hypothetical protein MYCTH_2294138 [Myceliophthora thermophila ATCC
42464]
Length = 253
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 100/221 (45%), Gaps = 21/221 (9%)
Query: 70 VLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPN 129
V A+V GP +++E+ +A ++V+ +P G G E+ E +L+ +L + ++ P
Sbjct: 30 VTASVNGPIEAQRRDEHAYEAHVDVVVRPAAGVGGTRERHLESLLQSSLTQLILVKNFPR 89
Query: 130 TTTSVIIQVVHD---------------DGALLPCAINAACAALVDAGIPMK--HLAVAIC 172
+ +++Q+ + A++P + AA AL+ AG+PM+ A A+
Sbjct: 90 SLIQIVLQIEDSPENDHVNTKLVQASLNFAIMPALVQAAILALLSAGVPMRATATATAVA 149
Query: 173 CCSAESG-YCILDPTKLEEQKMKGFAYLVFP--NSILSVLPEGSSLVQGEPMEHGIITSV 229
+ G I+DP+ E + + L F + +L EG V + I ++
Sbjct: 150 IVRQDGGKRTIVDPSPREVETAESVHVLGFTSHDGLLLAESEGDFTVSEWDQVYEIARAI 209
Query: 230 -THGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGDL 269
A + + L+ + + + FLR +++SK+ DL
Sbjct: 210 CCRSAPAKEGMAMVLDDEQTSGPDMRQFLRSAMESKVAADL 250
>gi|429853450|gb|ELA28524.1| 3 exoribonuclease family protein [Colletotrichum gloeosporioides
Nara gc5]
Length = 570
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 82/201 (40%), Gaps = 27/201 (13%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFC 60
M + R DGR N+LR L A GS+ +++ H C
Sbjct: 314 MALLRVDGRRWNELRRLHAQIRTQEAADGSS-------YLEMGH-----------TKVMC 355
Query: 61 YWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQS 120
G + + G N N A + + + G+ K +E E + + + +
Sbjct: 356 VVTGPSEPQRRGGAGGQTKDAAVNVNIVVAGFSSVDRRKRGRNDKRNQELEAAIAKAVAA 415
Query: 121 ICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGY 180
+ P+++ S+ + V+ DG+LL +NA+ AL+DAGIPM +A C + S Y
Sbjct: 416 NLHTHLFPHSSISISLHVLSQDGSLLATLLNASTLALIDAGIPMTDY-IAACTAGSTSTY 474
Query: 181 C--------ILDPTKLEEQKM 193
+LD EEQ++
Sbjct: 475 AAADDGADPLLDLNTQEEQEL 495
>gi|353234637|emb|CCA66660.1| probable exosome complex exonuclease rrp41 [Piriformospora indica
DSM 11827]
Length = 277
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 86/211 (40%), Gaps = 25/211 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R+DGR +LR L IL G +S + ++ H N VG
Sbjct: 14 RSDGRTQYELRSLEI---IL----GDSSRPRTINLHDSASNPHPN------APDGSAIVG 60
Query: 65 SGDTKVLAAVYGPKAGTKKNE---NPEKASIEVIWKPRTGQIGKPEK--------EYEII 113
G T V A V+GP+ + E + K S++V P +G + + E
Sbjct: 61 HGLTVVSARVFGPREPLLRREAIHDRAKLSVQVAMLPFSGGMAGRRRGRGDKRLLELGAA 120
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
++ T +S+ + P + +++++ DG L AIN+ AL DAG+ M VA+
Sbjct: 121 IESTFESVVQTGLYPRSQIDIVVEIHQQDGGTLQAAINSVTLALTDAGVAMYDQVVAV-S 179
Query: 174 CSAESGYCILDPTKLEEQKMKGFAYLVFPNS 204
S +LD T EE M V P S
Sbjct: 180 AGLHSTAVLLDLTHHEENDMPHLTVAVMPRS 210
>gi|242786884|ref|XP_002480892.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
putative [Talaromyces stipitatus ATCC 10500]
gi|218721039|gb|EED20458.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
putative [Talaromyces stipitatus ATCC 10500]
Length = 284
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 56/120 (46%), Gaps = 12/120 (10%)
Query: 66 GDTKVLAAVYGPKAGTKKNENPEK-ASIEV--------IWKPRTGQIGKPEKEYEIILKR 116
G+T ++ V+GP + E I+V K R G + + LK
Sbjct: 46 GNTSIMCTVHGPHETSGAGSATEALVDIDVNIAGFAGVDRKRRAGGSDRQSSQLSTALKS 105
Query: 117 TLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSA 176
QS + P++T +V + V+ DG+L AINA ALVDAGIPM L +C C+A
Sbjct: 106 AFQSHLHTYLYPHSTITVQVSVLSSDGSLFAAAINACTLALVDAGIPMPGL---LCACTA 162
>gi|452844097|gb|EME46031.1| hypothetical protein DOTSEDRAFT_86692 [Dothistroma septosporum
NZE10]
Length = 251
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 90/210 (42%), Gaps = 48/210 (22%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR N+LR + S A GS+ YF
Sbjct: 14 RTDGRRWNELRRIHGQMSTQAAADGSS--------------------------YFEM--- 44
Query: 65 SGDTKVLAAVYGPKAGTKKNENPE--KASIEV---------IWKPRTGQIGKPEKEYEII 113
G+TKV+ V+GP+ + + +A+I+V + + R G+ K +E +
Sbjct: 45 -GNTKVICTVHGPRQARQGGSGGQSREAAIDVEIGIAGFSGMDRKRRGKNDKRVQEMQYT 103
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
+ S T P++T ++++ V+ DGALL +NAA ALVDAG+PMK A+
Sbjct: 104 ISSAFASTVFTTSYPHSTITIVLHVLSQDGALLAACLNAATLALVDAGVPMKDYVAAVTT 163
Query: 174 CSA-------ESGYCILDPTKLEEQKMKGF 196
S E +LD +EEQ++ F
Sbjct: 164 GSTASYASNDEEADPLLDLNGVEEQELPFF 193
>gi|336464304|gb|EGO52544.1| hypothetical protein NEUTE1DRAFT_72274 [Neurospora tetrasperma FGSC
2508]
Length = 251
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 92/220 (41%), Gaps = 20/220 (9%)
Query: 70 VLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPN 129
V A+V GP +++E+ +A ++VI +P G G E+ E IL+ +L I ++ P
Sbjct: 29 VTASVNGPIEAQRRDEHAYEAHVDVIVRPSAGVGGTRERHLESILQSSLSQIILVKNFPR 88
Query: 130 TTTSVIIQVVHD---------------DGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
+ +++QV + ++P + A AL+ A +PMK A +
Sbjct: 89 SVIQIVLQVESTPENAYVNTKLVQASLNLPIIPALLQTAVLALLSAAVPMKATATSTVVA 148
Query: 175 SAE---SGYCILDPTKLEEQKMKGFAYLVFP--NSILSVLPEGSSLVQGEPMEHGIITSV 229
S + DP+ + ++ L F + +L EG V+ + +
Sbjct: 149 VVSDDGSKKIVADPSPKDIKEATSLHVLAFTSHDELLLSESEGDFTVKEWDGVYENAQKI 208
Query: 230 THGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGDL 269
S D + A+S + FLR +L++K+ DL
Sbjct: 209 CCQTASKQDGIDMVLDDDASSPDMRHFLRSTLETKVASDL 248
>gi|148697599|gb|EDL29546.1| exosome component 4, isoform CRA_c [Mus musculus]
Length = 211
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 81/187 (43%), Gaps = 16/187 (8%)
Query: 80 GTKKNENPEKASIEVIWKPRTGQIGKPEK---------EYEIILKRTLQSICILTINPNT 130
G++ P++A + + T G+ ++ E + L++T ++ + ++P +
Sbjct: 26 GSRSRALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRS 85
Query: 131 TTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAE--SGYCILDPTKL 188
+ +QV+ DG +NAA A++DAGIPM+ +C CSA G + D + +
Sbjct: 86 QIDIYVQVLQADGGTYAACVNAATLAVMDAGIPMRDF---VCACSAGFVDGTALADLSHV 142
Query: 189 EEQKMK-GFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGR 247
EE A + P S L E S + + +E ++ + A V + R
Sbjct: 143 EEAAGGPQLALALLPASGQIALLEMDSRLHEDHLEQ-VLEAAAQAARGVHTLLDLVVRQH 201
Query: 248 AASAKLS 254
A +S
Sbjct: 202 VQEASVS 208
>gi|403158112|ref|XP_003307453.2| hypothetical protein PGTG_00403 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375163684|gb|EFP74447.2| hypothetical protein PGTG_00403 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 292
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 56/107 (52%), Gaps = 4/107 (3%)
Query: 102 QIGKPEKEYEII---LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALV 158
+IG+ +K++ + ++ T + + +L + P +T + +QV+ DGALL AIN AL+
Sbjct: 110 KIGRSDKKFADLAQAIQNTFEPVVMLHLYPRSTIDIYVQVLQQDGALLQAAINVTTLALI 169
Query: 159 DAGIPMKHLAVAICCCSAESGYC-ILDPTKLEEQKMKGFAYLVFPNS 204
AG+ + +++ + + C +LD T E+ + V P +
Sbjct: 170 GAGVSISDYVLSVSVGALSTPSCPLLDLTNSEQTDLPNLTIAVLPRT 216
>gi|408391376|gb|EKJ70754.1| hypothetical protein FPSE_09047 [Fusarium pseudograminearum CS3096]
Length = 250
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 68/153 (44%), Gaps = 17/153 (11%)
Query: 66 GDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILT 125
G V+AAV GP +++EN +A ++VI +P G G E++ E I++ L+ I +
Sbjct: 26 GGYAVIAAVNGPVEAQRRDENAFEALVDVIVRPAAGVGGTRERQLESIMQAALRQIIPVR 85
Query: 126 INPNTTTSVIIQVVHD---------------DGALLPCAINAACAALVDAGIPMKHLAVA 170
P + +QV + ++P +++A L+ A IP+K + A
Sbjct: 86 DYPRCVIQITLQVAETPENAYVNAKVVQAQLNLPIIPALLHSAILGLLSAAIPLKTIGAA 145
Query: 171 --ICCCSAESGYCILDPTKLEEQKMKGFAYLVF 201
I E I+DP+ ++ K L F
Sbjct: 146 TLIAVPEGEGEDIIVDPSAVDIDHAKSVHALAF 178
>gi|392566799|gb|EIW59974.1| mRNA transport regulator 3 [Trametes versicolor FP-101664 SS1]
Length = 261
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 110/267 (41%), Gaps = 59/267 (22%)
Query: 8 GRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGD 67
GR +RP+ ++++A+GSA +I+T
Sbjct: 40 GRAARDIRPIYLKAGLINQANGSA-------YIETER----------------------- 69
Query: 68 TKVLAAVYGPKAGTKKNENPE-KASIEVIWKP------RTGQIGKPEKEYEIILKRTLQS 120
TK+ AVYGP+ N + + ++EV + P R ++ + +++ L S
Sbjct: 70 TKIACAVYGPRQSKTTVYNEKGRLNVEVKFAPFSCTKRRVPIRDAEDRSVAVQIQQALAS 129
Query: 121 ICILTINPNTTTSVIIQVVHDDG--ALLPCAINAACAALVDAGIPMKHLAVAICCCSAES 178
L + P +T + + V+ +DG + AA AL DAGI M L VA C +
Sbjct: 130 AVRLELLPKSTLDIFVTVIENDGIEGCIAAGSVAASVALADAGIEMLGL-VASCSAAVVG 188
Query: 179 GYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSV-THGAMSVD 237
+DPT+ E S L GS ++ G P G ITSV G+M+ D
Sbjct: 189 KEIWMDPTEEE-----------------SKLASGSVVLAGLPA-LGTITSVWQSGSMAPD 230
Query: 238 DYFHCLERGRAASAKLSDFLRRSLQSK 264
+ C+E + + A + + +SL K
Sbjct: 231 EAIKCMEACQESCADIHTVMAQSLLEK 257
>gi|443919506|gb|ELU39651.1| exosome component 4 [Rhizoctonia solani AG-1 IA]
Length = 296
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 73/263 (27%), Positives = 102/263 (38%), Gaps = 58/263 (22%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
RADGR +LR + S A GSA+ S G
Sbjct: 13 RADGRKARELRSITIELSPHPTADGSATVSHGL--------------------------- 45
Query: 65 SGDTKVLAAVYGPKAGTKKNENP-EKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICI 123
T V V+GP+ +++ +KA I V G +G + LK + C
Sbjct: 46 ---TTVNVCVFGPREAKNRSQTMHDKALINVEISEAPGGVGT-----NVSLKADPRICCF 97
Query: 124 LTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAE--SGYC 181
+ N V+ Q DG +L AINAA AL+DAGI + +C C+A
Sbjct: 98 YSRNIRARRPVLQQ----DGGVLQTAINAATLALIDAGIALTDY---VCACTAACIDTTG 150
Query: 182 ILDPTKLEEQKMKGFAYLVFPNSILSVLPEGS--SLVQGEPMEH-GIITSVTHGAMSVDD 238
+LD T EE + PN L+VLP +LV E H + A+ D
Sbjct: 151 LLDLTNTEESDL--------PNLTLAVLPRSKRVTLVTMETRLHVERFDQIFKLALLAGD 202
Query: 239 YFHCLERGRAASAKLSDFLRRSL 261
H ER RAA + + L +S+
Sbjct: 203 ILH--ERMRAAIRERTGKLVQSM 223
>gi|403218498|emb|CCK72988.1| hypothetical protein KNAG_0M01350 [Kazachstania naganishii CBS
8797]
Length = 247
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 76/190 (40%), Gaps = 27/190 (14%)
Query: 5 RADGRNPNQLRPLACSCSI-LHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWV 63
R DGR N+LR S S H A GS+ QG + T
Sbjct: 13 RLDGRRWNELRRFQASISTHAHSADGSSYLEQGNNKVVT------------------LVR 54
Query: 64 GSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEK---EYEIILKRTLQS 120
G G+ + G +A + + N K S + RT + E+ E + L+RT +
Sbjct: 55 GPGEPASRGQLDGQRATLRVSVNVTKFS--KFERSRTSH--RNERRVLEIQTSLRRTFEK 110
Query: 121 ICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGY 180
C+L + P T V + V+ DG +L IN ALVDAG+ M VA
Sbjct: 111 ACLLHLYPRTAIDVELHVLEQDGGVLGAMINGITLALVDAGVAMWDY-VAGVSVGLHDQT 169
Query: 181 CILDPTKLEE 190
+LD LEE
Sbjct: 170 PLLDCNSLEE 179
>gi|340521310|gb|EGR51545.1| predicted protein [Trichoderma reesei QM6a]
Length = 248
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 70/154 (45%), Gaps = 18/154 (11%)
Query: 66 GDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILT 125
G + AAV GP +++ENP +A ++V +P G G E++ E IL+ L+ + +
Sbjct: 23 GGYTITAAVNGPVEAQRRDENPFEALVDVNVRPAAGVGGTAERQLEAILQPALRHLIAIR 82
Query: 126 INPNTTTSVIIQVVHD---------------DGALLPCAINAACAALVDAGIPMKHLAVA 170
P V +QV+ + ++P ++AA L+ A IP+ +A A
Sbjct: 83 NFPRCVVQVTLQVMEAPENAYVNSKVMQPRLNLGIIPSLLHAAMLGLLTAAIPLNTVASA 142
Query: 171 IC--CCSAESGYCI-LDPTKLEEQKMKGFAYLVF 201
C +A +G I +DP+ E + L F
Sbjct: 143 TCLAVTNATAGSTIKVDPSPTEIDQATSVHVLGF 176
>gi|84043476|ref|XP_951528.1| ribosomal RNA processing protein 41B [Trypanosoma brucei TREU927]
gi|14250914|emb|CAC39262.1| Rrp41p homologue [Trypanosoma brucei]
gi|33348349|gb|AAQ15675.1| ribosomal RNA processing protein 41B [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
gi|62358716|gb|AAX79172.1| ribosomal RNA processing protein 41B [Trypanosoma brucei]
Length = 256
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 84/224 (37%), Gaps = 55/224 (24%)
Query: 3 VDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYW 62
+ R DGR ++R S L + GSA +SQG
Sbjct: 4 ISRRDGRTAREMRGKELRTSDLSQFDGSAWYSQGL------------------------- 38
Query: 63 VGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIG---------------KPE 107
T V A+ GP A ++N I V R Q G +
Sbjct: 39 -----TAVTVAINGPTAARQENYRRCTTCIHVNRAARIPQEGGTGRLIMMERRERERCED 93
Query: 108 KEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHL 167
E + L +++I L P + V+ DDGAL A NA AL+DAG+P +
Sbjct: 94 GELKQFLTSLVEAIVCLDRFPRCVLEAHVTVLMDDGALFAVASNAIMCALLDAGVPCRST 153
Query: 168 --AVAICCCSAESG------YCILDPTKLEE--QKMKGFAYLVF 201
AV++ C+ E+ LDPT +EE +++ +A F
Sbjct: 154 IAAVSLIMCNPEASGNEGEPEIFLDPTAVEESTDEVRSYASATF 197
>gi|150951278|ref|XP_001387575.2| predicted protein [Scheffersomyces stipitis CBS 6054]
gi|149388461|gb|EAZ63552.2| 3'->5' exoribonuclease [Scheffersomyces stipitis CBS 6054]
Length = 241
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 80/210 (38%), Gaps = 40/210 (19%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR N++R C R + + S G +I+
Sbjct: 10 RIDGRRWNEIRNFEC------RINTHPNSSDGSSYIE----------------------- 40
Query: 65 SGDTKVLAAVYGP-KAGTKKNENPEKASIEV---------IWKPRTGQIGKPEKEYEIIL 114
G+TKV+ V GP + + N +A++EV + + + K + + L
Sbjct: 41 QGNTKVICVVQGPMEPALRSQANSNEATLEVNLSVANFSTTERKKRSKSEKRMVQLKTTL 100
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
+RT Q + + P T + + V+ DG +L NA AL+DAG+ M + VA
Sbjct: 101 ERTFQQSVMCNLYPRTLIRIDLHVLSQDGGMLAACTNAMTLALIDAGVSM-YDYVAAMTA 159
Query: 175 SAESGYCILDPTKLEEQKMKGFAYLVFPNS 204
+LD LEE M V S
Sbjct: 160 GLHDQTPLLDMNGLEENDMSTLTIGVIGKS 189
>gi|448116061|ref|XP_004202964.1| Piso0_001836 [Millerozyma farinosa CBS 7064]
gi|359383832|emb|CCE79748.1| Piso0_001836 [Millerozyma farinosa CBS 7064]
Length = 234
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 60/129 (46%), Gaps = 16/129 (12%)
Query: 66 GDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILT 125
G TK++A+V GP + E P AS+E+I +P G EK E L+ LQS+ I
Sbjct: 22 GKTKLVASVSGPIEPRSRQELPNSASLEIIIRPAIGVSTTREKLIEDKLRSLLQSVIIRH 81
Query: 126 INPNTTTSVIIQ-VVHDD---------------GALLPCAINAACAALVDAGIPMKHLAV 169
P +++Q +V +D L AINA AL+D+ I + +
Sbjct: 82 KYPRQLIQIVVQFLVTEDTNNYYITESQKQKLTSIELNAAINACYFALIDSNIALYYSFS 141
Query: 170 AICCCSAES 178
++C C+ S
Sbjct: 142 SVCICANSS 150
>gi|156839667|ref|XP_001643522.1| hypothetical protein Kpol_473p23 [Vanderwaltozyma polyspora DSM
70294]
gi|156114136|gb|EDO15664.1| hypothetical protein Kpol_473p23 [Vanderwaltozyma polyspora DSM
70294]
Length = 223
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 87/207 (42%), Gaps = 20/207 (9%)
Query: 67 DTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTI 126
DTKV+ AV GP + E P + ++E+I +P G EK E L+ + I L
Sbjct: 23 DTKVICAVTGPIEPKARQELPTQLALEIIVRPAKGVPSTREKLMEDRLRSVITPIVSLYQ 82
Query: 127 NPNTTTSVIIQVVHDDGA-------LLPCAINAACAALVDAGIPMKHLAVAICCCSAE-S 178
P + Q++ + L C INA AL+D+G+ + +A ++ + S
Sbjct: 83 YPRKLCQITCQILESGESEYEFSQKELSCCINATLLALIDSGLALNSIASSVSMAILKGS 142
Query: 179 GYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDD 238
I++PT + + + L L++G ++ + G +
Sbjct: 143 DDVIINPTNSQLLQSQSVHVLAL------------QLIEGSRKVKNVLFLDSSGDFTEQQ 190
Query: 239 YFHCLERGRAASAKLSDFLRRSLQSKL 265
F+ LE G + +L LR ++SK+
Sbjct: 191 LFNVLEIGEKSCLELGLTLRSIIESKV 217
>gi|261326393|emb|CBH09353.1| RNase PH-like protein [Trypanosoma brucei gambiense DAL972]
Length = 256
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 84/224 (37%), Gaps = 55/224 (24%)
Query: 3 VDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYW 62
+ R DGR ++R S L + GSA +SQG
Sbjct: 4 ISRRDGRTAREMRGKELRTSDLSQFDGSAWYSQGL------------------------- 38
Query: 63 VGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIG---------------KPE 107
T V A+ GP A ++N I V R Q G +
Sbjct: 39 -----TAVTVAINGPTAARQENYRRCTTCIHVNRAARIPQEGGTGRLIMMERRERERCED 93
Query: 108 KEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHL 167
E + L +++I L P + V+ DDGAL A NA AL+DAG+P +
Sbjct: 94 GELKQFLASLVEAIVCLDRFPRCVLEAHVTVLMDDGALFAVASNAIMCALLDAGVPCRST 153
Query: 168 --AVAICCCSAESG------YCILDPTKLEE--QKMKGFAYLVF 201
AV++ C+ E+ LDPT +EE +++ +A F
Sbjct: 154 IAAVSLLMCNPEASGNEGEPEIFLDPTAVEESTDEVRSYASATF 197
>gi|270009587|gb|EFA06035.1| hypothetical protein TcasGA2_TC008865 [Tribolium castaneum]
Length = 300
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 70/140 (50%), Gaps = 10/140 (7%)
Query: 62 WVGSGDTKVLAAVYGPKAGTKKNENPEKASI--EVIWKP------RTGQIGKPEKEYEII 113
++ TKV+ +V+ P+ K + K I E + P R Q E+++ I
Sbjct: 87 YIELDQTKVIVSVFDPREIPNKTDYSSKGEIYCEFKFAPFSCHKRRLHQQDAEEQQFSAI 146
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
+K+ L+S PN + V+H+DGA L AI AA AL AGIPM L ++
Sbjct: 147 MKQALESAVFRHEFPNFQVDIYAMVLHNDGAALSAAITAAGVALAHAGIPMYDLITSV-T 205
Query: 174 CSAESGYCILDPTKLEEQKM 193
+ + + ++DPT LEE+++
Sbjct: 206 LAVQGNHLLVDPT-LEEERL 224
>gi|346320011|gb|EGX89612.1| exosome complex exonuclease RRP41 [Cordyceps militaris CM01]
Length = 273
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 85/216 (39%), Gaps = 58/216 (26%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR N+LR L A GS+ ++
Sbjct: 14 RVDGRRWNELRRLHALIRTQDAADGSS------------------------------YLE 43
Query: 65 SGDTKVLAAVYGPK----------AGTKKNENPEKASIEV---------IWKPRTGQIGK 105
G TKV+ V GP G + N + A++ V + + + G+ K
Sbjct: 44 IGHTKVMCVVSGPSEQQQQQQAQRRGGQANATRDGATVHVNIIIAGFSSVDRKKRGRNDK 103
Query: 106 PEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMK 165
+E EI + + S I P+++ ++ + V+ DG+LL +NA ALVDAGIPM
Sbjct: 104 RIQEMEITIAKAFSSNLHTHIFPHSSIAISLHVLSQDGSLLAALLNATTLALVDAGIPMT 163
Query: 166 HLAVAICCCSAESGYC--------ILDPTKLEEQKM 193
+A C + S + +LD EEQ++
Sbjct: 164 DY-IAACTAGSTSSFAAGDDAADPLLDLNTQEEQEL 198
>gi|47210411|emb|CAF91679.1| unnamed protein product [Tetraodon nigroviridis]
Length = 276
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 67/138 (48%), Gaps = 10/138 (7%)
Query: 62 WVGSGDTKVLAAVYGPKAGTKKNENPEKA---SIEVIWKP-----RTGQI-GKPEKEYEI 112
++ +G TK+L VYGP+ +K+E + + +V + P R I G ++++
Sbjct: 63 YMEAGATKLLCCVYGPRETERKDETDMRCGRLTADVRFAPFSCPERGSWIQGSQDRDFSS 122
Query: 113 ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAIC 172
+L +LQ L P + V + V+ + G++L A+ A AL DAGI M L + C
Sbjct: 123 MLLESLQPAVCLHRYPRSQIEVHLVVLENGGSVLAHAVTCASVALADAGIQMYDLVLG-C 181
Query: 173 CCSAESGYCILDPTKLEE 190
+ + DPT EE
Sbjct: 182 SLRQDGASFVADPTYAEE 199
>gi|118399581|ref|XP_001032115.1| 3' exoribonuclease family, domain 1 containing protein [Tetrahymena
thermophila]
gi|89286453|gb|EAR84452.1| 3' exoribonuclease family, domain 1 containing protein [Tetrahymena
thermophila SB210]
Length = 240
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 78/195 (40%), Gaps = 38/195 (19%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR N+LR + C GS QG
Sbjct: 12 REDGRKKNELRKVDCILGFDQTVEGSCKLIQGL--------------------------- 44
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTG----QIGKPEK---EYEIILKRT 117
T+++ + GP + + E+ +++ P +G +I K +K E+ L+ +
Sbjct: 45 ---TEIVCLIKGPHNKSTRRESEGFLNVQYNVAPFSGTDRRKISKFDKDWNEFTENLRVS 101
Query: 118 LQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAE 177
+S+ + + +I+ V+ DG+ NA AL+DAGIPMK V+ S
Sbjct: 102 FESVILTEQLGSGEIDIIVSVIQADGSAKSSIFNAISLALMDAGIPMKDFTVSSTVISLN 161
Query: 178 SGYCILDPTKLEEQK 192
S +LD T E++K
Sbjct: 162 S-EILLDATYQEQKK 175
>gi|149066120|gb|EDM15993.1| exosome component 4 (predicted), isoform CRA_b [Rattus norvegicus]
Length = 211
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 60/122 (49%), Gaps = 14/122 (11%)
Query: 80 GTKKNENPEKASIEVIWKPRTGQIGKPEK---------EYEIILKRTLQSICILTINPNT 130
G++ P++A + + T G+ ++ E + L++T ++ + ++P +
Sbjct: 26 GSRSRALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRS 85
Query: 131 TTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAE--SGYCILDPTKL 188
+ +QV+ DG +NAA A++DAGIPM+ +C CSA G + D + +
Sbjct: 86 QIDIYVQVLQADGGTYAACVNAATLAVMDAGIPMRDF---VCACSAGFVDGTALADLSHV 142
Query: 189 EE 190
EE
Sbjct: 143 EE 144
>gi|393215976|gb|EJD01467.1| hypothetical protein FOMMEDRAFT_69260, partial [Fomitiporia
mediterranea MF3/22]
Length = 191
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 72/174 (41%), Gaps = 40/174 (22%)
Query: 64 GSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICI 123
G G TK LA+V GP E KA+ EVI +P G G K L+ L I
Sbjct: 20 GFGQTKALASVSGPIEVRLAVEQASKATFEVIARPLAGLPGTESKALASALRSALLPSMI 79
Query: 124 LTINPNTTTSVIIQVV----------------------HDDGALLPCAINAACAALVDA- 160
LT NP T ++ Q + AL+ INAA AL++A
Sbjct: 80 LTNNPRTLVQLVAQSLTPSTTTTSNRSGQLGSVNSKSFRTSPALVAAHINAASLALLNAS 139
Query: 161 GIPMKHLAVAICCCS-----------AESGYCILDPTKLEEQKMKG---FAYLV 200
IP++ + +C S ++S ++DP++ E + G FA+L+
Sbjct: 140 SIPLRGV---VCAASVGRVRRNPDNDSDSALLVVDPSEDELHSLDGIGAFAFLI 190
>gi|414883682|tpg|DAA59696.1| TPA: chloroplast RNA processing4 [Zea mays]
Length = 880
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 73/171 (42%), Gaps = 22/171 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R+DGR+P +LRP+ C +L RAHGSA +++G +T L + V
Sbjct: 429 RSDGRSPWELRPINSQCGLLPRAHGSALFTRG----ETQSLAVVTLGGYQMAQRIDNLVD 484
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKE---YEIILKRTLQSI 121
+ D+K Y P EV G+IG P + + ++ +R L+ I
Sbjct: 485 TEDSKSFYLQY---------SFPPSCVGEV------GRIGAPSRREIGHGMLAERALEPI 529
Query: 122 CILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAIC 172
L + T V + +G+ ++ C AL DAG+P+K I
Sbjct: 530 LPLEEDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKFPVAGIA 580
>gi|320581308|gb|EFW95529.1| exosome component Ski6p, putative [Ogataea parapolymorpha DL-1]
Length = 246
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 75/203 (36%), Gaps = 44/203 (21%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR N+LR C + A +S+ Q
Sbjct: 13 RVDGRRWNELRRFECQINTHPNAADGSSYVQ----------------------------- 43
Query: 65 SGDTKVLAAVYGP-------KAGTKKNENPEKASIEVIWKPRTGQIGKPE-------KEY 110
G++KVL V GP AGTK + N S+ + + P K +E
Sbjct: 44 QGNSKVLCLVKGPMEHGANLAAGTKLDPNGPVLSLNINYPPFASNERKKRPKNDRRLQEI 103
Query: 111 EIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVA 170
IILKR +L T + + V+ DG LL C NA AL+DAGI + A
Sbjct: 104 SIILKRCFMKTIVLKNYSRTAIDINLTVLAMDGGLLACFCNAITLALIDAGISLYDYVSA 163
Query: 171 ICCCSAESGYCILDPTKLEEQKM 193
+ + +LD LEE +
Sbjct: 164 VSVGLYDQ-TPLLDMNALEENDL 185
>gi|342876785|gb|EGU78342.1| hypothetical protein FOXB_11157 [Fusarium oxysporum Fo5176]
Length = 268
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 77/199 (38%), Gaps = 29/199 (14%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR N+LR L A GS+ G + C G
Sbjct: 14 RVDGRRWNELRRLHAQIRTQDAADGSSYLEMGHTKV------------------MCIVTG 55
Query: 65 SGDTKVLAAVY--GPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSIC 122
+ +V P+ N N A + + + G+ K +E E + S
Sbjct: 56 PSEQQVQRRGGQQAPRDTAAINVNVVVAGFSSVDRKKRGRNDKRIQEIETTIANAFTSNL 115
Query: 123 ILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYC- 181
+ P+++ ++ + V+ DG+LL +NA AL+DAGIPM +A C + S Y
Sbjct: 116 HTHLFPHSSITISLHVLSQDGSLLAALLNATTLALIDAGIPMTDY-IAACTAGSTSTYAA 174
Query: 182 -------ILDPTKLEEQKM 193
+LD EEQ++
Sbjct: 175 GDDTADPLLDLNNQEEQEL 193
>gi|170290983|ref|YP_001737799.1| exosome complex exonuclease 1 [Candidatus Korarchaeum cryptofilum
OPF8]
gi|170175063|gb|ACB08116.1| exosome complex exonuclease 1 [Candidatus Korarchaeum cryptofilum
OPF8]
Length = 248
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 80/195 (41%), Gaps = 40/195 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P+++RP+ +L +A GSA F W
Sbjct: 19 RTDGRLPHEMRPIKMMVGVLEKADGSA---------------------------FVEW-- 49
Query: 65 SGDTKVLAAVYGPKAGTKKNEN-PEKASIEVIWK------PRTGQIGKPEKEYEI--ILK 115
G ++LAAV+GP+ K+ P++A I + P + G + E+ +++
Sbjct: 50 -GGNRILAAVFGPREVHPKHMVLPDRALIRARYNMAPFSTPERRRPGPDRRSIELSKVIR 108
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
L+ P + + ++V+ D INAA AL AG+ M+ L V+ C
Sbjct: 109 EALKPAIFAENYPGSVIDIFVEVLRSDAGTRVAGINAASLALASAGVAMRGL-VSACSVG 167
Query: 176 AESGYCILDPTKLEE 190
+ ++DP E+
Sbjct: 168 RVGSFIVVDPNHDED 182
>gi|380015549|ref|XP_003691763.1| PREDICTED: exosome complex component RRP41-like [Apis florea]
Length = 271
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 75/184 (40%), Gaps = 51/184 (27%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +LR + + +A GSA ++
Sbjct: 14 RLDGRRALELRQIRIKMGVFGQADGSA------------------------------YIE 43
Query: 65 SGDTKVLAAVYG---PKAGTKKNENPEKASI---------------EVIWKPRTGQIGKP 106
G+TK+L VYG P+ T ++ + I E KPR +
Sbjct: 44 HGNTKILVTVYGPHQPRNSTGRSTSKVTKGIVNCQYSMAVFSLSSGERKRKPRG---DRK 100
Query: 107 EKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKH 166
+E + LK +++I L + P + + ++ + DG+ ++NAA AL+DAGIP+K+
Sbjct: 101 SQERSLQLKHAMEAIIHLELYPRSQIDIYVEALQVDGSEYCASVNAATLALIDAGIPIKN 160
Query: 167 LAVA 170
A+
Sbjct: 161 YAIG 164
>gi|409048701|gb|EKM58179.1| hypothetical protein PHACADRAFT_88763 [Phanerochaete carnosa
HHB-10118-sp]
Length = 290
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 61/258 (23%), Positives = 102/258 (39%), Gaps = 59/258 (22%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR+ ++LRP+ L R GSA + G
Sbjct: 7 RHDGRDNDELRPVTIKYEGLDRVDGSAKF------------------------------G 36
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICIL 124
G T+ LA++ GP E P +A++E+ +P G + LK L +L
Sbjct: 37 FGQTQALASLSGPIEIRPNLELPSQATLEIHIRPLASVPGTDSRALAATLKAVLSPSLLL 96
Query: 125 TINPNTTTSVIIQVVHD--------------DGALLPCAINAACAALVDAG-IPMKHLAV 169
+ +P T ++ Q + + +L+ +NA A+L++AG +P+K +
Sbjct: 97 SHHPRTLVQIVGQALCGSDSGSGLGSTGRGWNASLVASLVNACSASLINAGSVPIKGV-- 154
Query: 170 AICCCSA-------ESG--YCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEP 220
+C S +SG +LDP++ E ++G VF S LP Q P
Sbjct: 155 -VCAASVGRIPDLNDSGSYVLVLDPSEAELASLEGGGCFVF--MFASTLPPSPDDDQDTP 211
Query: 221 MEHGIITSVTHGAMSVDD 238
+ T+ T + +DD
Sbjct: 212 HTSLLWTNYTATSGVIDD 229
>gi|50307491|ref|XP_453725.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49642859|emb|CAH00821.1| KLLA0D14993p [Kluyveromyces lactis]
Length = 225
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 91/214 (42%), Gaps = 16/214 (7%)
Query: 63 VGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSIC 122
V + TKV+ +V GP + E P + ++E+I KP G EK E ++ L +
Sbjct: 17 VSNSGTKVICSVSGPMEPKSRQELPTQLALEIIVKPAEGVQSTREKLMEDQIRSVLTPVL 76
Query: 123 ILTINPNTTTSVIIQVVHDDGAL------LPCAINAACAALVDAGIPMKHLAVAICC-CS 175
++P + +QV+ + + +NAA ALVDAG+P+ + C +
Sbjct: 77 ARYLHPRQFVQICLQVLEAGESRDYTVKEVSVCVNAAVLALVDAGVPLLSMCSGTCIGIT 136
Query: 176 AESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMS 235
E +++PT E Q K + V+ L G++ G+ ++ + G+
Sbjct: 137 TEGKQLVVNPT--ESQLAKCESVHVY------CLELGTN-ENGDIDVRNLLLLDSLGSFD 187
Query: 236 VDDYFHCLERGRAASAKLSDFLRRSLQSKLPGDL 269
F LE G +L LR ++ K+ D
Sbjct: 188 ESQLFKVLETGEKECIRLYTELRSVIKDKVAKDF 221
>gi|325189047|emb|CCA23575.1| exosome complex exonuclease RRP41like protein putati [Albugo
laibachii Nc14]
Length = 261
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 67/184 (36%), Gaps = 48/184 (26%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR + R + + HRA GSA ++
Sbjct: 19 RLDGRREAETRRVRARLGVFHRADGSA------------------------------YIE 48
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKP----------------RTGQIGKPEK 108
G+TKVL VYGP+ K + ++ K + + K
Sbjct: 49 QGNTKVLVVVYGPREVDGTTLKNAKGAASLVKKAIVHCECTQASFATSDRKVSRNASDRK 108
Query: 109 EYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKH 166
E+ +K+ +S + P + S+ QV+ DG L +INA AL+DAGI +
Sbjct: 109 NVEMSSAIKQIFESCIFTNLYPQSQISIYPQVLQADGGELAASINATSLALMDAGIALND 168
Query: 167 LAVA 170
VA
Sbjct: 169 FVVA 172
>gi|308481633|ref|XP_003103021.1| CRE-EXOS-4.2 protein [Caenorhabditis remanei]
gi|308260397|gb|EFP04350.1| CRE-EXOS-4.2 protein [Caenorhabditis remanei]
Length = 273
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 74/204 (36%), Gaps = 35/204 (17%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFC 60
ME D + R+ RPL C + GS
Sbjct: 56 METDDVEKRSATAFRPLCVKCGVFGAQDGSG----------------------------- 86
Query: 61 YWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQS 120
+ G+T+VLA + GP+ K E K +I + ++ E + +L +
Sbjct: 87 -YAEFGNTRVLAQITGPEGDGKWEEAYAKVTITLKGVENETKVA----ELRADMTSSLSA 141
Query: 121 ICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGY 180
+ + P + + V+ DDG +L AI A AL +GI L + ++G
Sbjct: 142 VIFVNKYPGKVIDIEVTVLSDDGGVLSTAITAVTLALAHSGIEHMGLTASAHVTLRQNGD 201
Query: 181 CILDPTKLE-EQKMKGFAYLVFPN 203
I DP+ E E + G + PN
Sbjct: 202 YITDPSTSEAEDAIGGVTFAFVPN 225
>gi|392575535|gb|EIW68668.1| hypothetical protein TREMEDRAFT_31716 [Tremella mesenterica DSM
1558]
Length = 252
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 68/152 (44%), Gaps = 11/152 (7%)
Query: 63 VGSGDTKVLAAVYGPKAGTKKNENPEK---ASIEVIWKPRTGQIGKPEK-------EYEI 112
V SG T V ++GP+ ++ + ++EV P + Q G E +
Sbjct: 43 VTSGLTSVTVTIFGPREPRIRSSSSHDHVTLTVEVGVPPWSQQSGMKRTRGDRRLVEMGM 102
Query: 113 ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAIC 172
LK++ + + + + P + + +QV+ DG +LP AINA AL+DAGIP+ +I
Sbjct: 103 SLKQSFEPVIMGNLYPRSEILINVQVLSSDGGILPTAINATTLALIDAGIPLLDYLTSI- 161
Query: 173 CCSAESGYCILDPTKLEEQKMKGFAYLVFPNS 204
+LD ++ EE + P S
Sbjct: 162 SLGLHLTQPLLDLSQPEESDLPSLVVACLPAS 193
>gi|328777661|ref|XP_003249381.1| PREDICTED: exosome complex exonuclease RRP41-like isoform 1 [Apis
mellifera]
Length = 284
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 75/184 (40%), Gaps = 51/184 (27%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +LR + + +A GSA ++
Sbjct: 30 RLDGRRALELRQIRIKMGVFGQADGSA------------------------------YIE 59
Query: 65 SGDTKVLAAVYG---PKAGTKKNENPEKASI---------------EVIWKPRTGQIGKP 106
G+TK+L VYG P+ T ++ + I E KPR +
Sbjct: 60 HGNTKILVTVYGPHQPRNSTGRSTSKITKGIVNCQYSMAVFSLSSGERKRKPRG---DRK 116
Query: 107 EKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKH 166
+E + LK +++I L + P + + ++ + DG+ ++NAA AL+DAGIP+K+
Sbjct: 117 SQERSLQLKHAMEAIIHLELYPRSQIDIYVEALQVDGSEYCASVNAATLALIDAGIPIKN 176
Query: 167 LAVA 170
A+
Sbjct: 177 YAIG 180
>gi|357508847|ref|XP_003624712.1| Polyribonucleotide nucleotidyltransferase [Medicago truncatula]
gi|355499727|gb|AES80930.1| Polyribonucleotide nucleotidyltransferase [Medicago truncatula]
Length = 734
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 77/168 (45%), Gaps = 30/168 (17%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R+DGR PN++RP+ SC +L RAHGSA +++G +T L
Sbjct: 502 RSDGRTPNEIRPINSSCGLLPRAHGSALFTRG----ETQSLAVATL-------------- 543
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKP----RTGQIGKPEKE---YEIILKRT 117
GD K+ + ++ ++ ++ + P G+IG P + + ++ +R+
Sbjct: 544 -GDNKMAQRI----DNLMDVDDYKRFYLQYSFPPSCVGEVGRIGAPSRREIGHGMLAERS 598
Query: 118 LQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMK 165
L++I + T V + +G+ ++ C AL DAG+P+K
Sbjct: 599 LETILPSDKDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIK 646
>gi|70989313|ref|XP_749506.1| exosome complex endonuclease 1/ribosomal RNA processing protein
[Aspergillus fumigatus Af293]
gi|66847137|gb|EAL87468.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
putative [Aspergillus fumigatus Af293]
Length = 269
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 61/139 (43%), Gaps = 15/139 (10%)
Query: 62 WVGSGDTKVLAAVYGPKAGTKKNENPEKASIE---------------VIWKPRTGQIGKP 106
++ G+T ++ +V+GP G + + A V + R G +
Sbjct: 42 FLSMGNTSIMCSVHGPAEGKRGDATGGAAGSAGAVVEVDVNIAGFAGVDRRRRAGGSDRQ 101
Query: 107 EKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKH 166
IL+ QS + P++T S+ + V+ DG+LL A+NA ALVDAGIPM
Sbjct: 102 SSRIATILRSAFQSHLHTHLYPHSTISIHVSVLSADGSLLAAAVNACTLALVDAGIPMPG 161
Query: 167 LAVAICCCSAESGYCILDP 185
L A + S + DP
Sbjct: 162 LLSACTSGMSGSASTLRDP 180
>gi|261332827|emb|CBH15822.1| RRP41p homologue, putative [Trypanosoma brucei gambiense DAL972]
Length = 252
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 73/173 (42%), Gaps = 40/173 (23%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR PN+ R LA F S C C V
Sbjct: 14 RLDGRRPNEPRRLALE------------------------------FGKISGCDGCCTVV 43
Query: 65 SGDTKVLAAVYGPKAGTKKNE---NPEKASIEVIWKPRTGQIGKPEKEY----EIILKRT 117
SG + V A VYGP+ + + + N + +V+ G+ + ++ Y E I
Sbjct: 44 SGLSHVCATVYGPREVSNRLDGKYNEVTITCDVVVAAFAGERRREQQRYSRLSEDISASV 103
Query: 118 L---QSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHL 167
L +S+ +L+ PN+ + I+V+ DG+ INAAC AL+DA I M+ +
Sbjct: 104 LDVARSVVLLSQYPNSQIHICIEVLKQDGSDKAACINAACLALIDASIAMRDV 156
>gi|159128917|gb|EDP54031.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
putative [Aspergillus fumigatus A1163]
Length = 269
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 60/133 (45%), Gaps = 17/133 (12%)
Query: 62 WVGSGDTKVLAAVYGPKAGTKKNENPEKASIE---------------VIWKPRTGQIGKP 106
++ G+T ++ +V+GP G + + A V + R G +
Sbjct: 42 FLSMGNTSIMCSVHGPAEGKRGDATGGAAGSAGAVVEVDVNIAGFAGVDRRRRAGGSDRQ 101
Query: 107 EKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKH 166
IL+ QS + P++T S+ + V+ DG+LL A+NA ALVDAGIPM
Sbjct: 102 SSRIATILRSAFQSHLHTHLYPHSTISIHVSVLSADGSLLAAAVNACTLALVDAGIPMPG 161
Query: 167 LAVAICCCSAESG 179
L A C S SG
Sbjct: 162 LLSA--CTSGMSG 172
>gi|452982879|gb|EME82637.1| hypothetical protein MYCFIDRAFT_80273 [Pseudocercospora fijiensis
CIRAD86]
Length = 251
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 86/209 (41%), Gaps = 42/209 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR N+LR + S A GS+ YF
Sbjct: 14 RVDGRRWNELRRIHGQMSTQAAADGSS--------------------------YFEM--- 44
Query: 65 SGDTKVLAAVYGPKAGTKK--NENPEKASIEV---------IWKPRTGQIGKPEKEYEII 113
G+TK++ V GP+ T+ + ASIEV + + + + K +E +
Sbjct: 45 -GNTKIICTVLGPRQQTRGGGRDQSRSASIEVEIGIAGFSGMDRKKRSRTDKRTQEMQYT 103
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
+ S + ++ P +T S+++ V+ DGALL +NAA AL+DAGIPMK VA C
Sbjct: 104 ISSAFASTILTSLYPQSTISIMLHVLSQDGALLAACLNAATLALIDAGIPMKDY-VAACT 162
Query: 174 CSAESGYCILDPTKLEEQKMKGFAYLVFP 202
+ + Y D + G L P
Sbjct: 163 TGSTASYASNDEEADPLLDLNGMEELELP 191
>gi|367014877|ref|XP_003681938.1| hypothetical protein TDEL_0E04840 [Torulaspora delbrueckii]
gi|359749599|emb|CCE92727.1| hypothetical protein TDEL_0E04840 [Torulaspora delbrueckii]
Length = 246
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 81/201 (40%), Gaps = 43/201 (21%)
Query: 5 RADGRNPNQLRPLACSCSI-LHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWV 63
R DGR N+LR CS + H A GS+ QG
Sbjct: 13 RLDGRRWNELRRFECSINTHSHAADGSSYLEQG--------------------------- 45
Query: 64 GSGDTKVLAAVYGPKAGTKKNE-NPEKASIEV---IWK----PRTGQIGKPEK---EYEI 112
+ KV+ V GP+ + +++ + KA + + I K R+ K E+ E +
Sbjct: 46 ---NNKVITLVKGPQEPSSRSQVDTAKALLRISVNITKFSKTERSKTSHKNERRVLEMQT 102
Query: 113 ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAIC 172
L RT +L + P T ++ + V+ DG ++ IN AL+DAGI M +
Sbjct: 103 ALVRTFNKNVMLNVYPRTLINIEVHVLQQDGGIMGSLINGITLALIDAGIAMYDYISGVS 162
Query: 173 CCSAESGYCILDPTKLEEQKM 193
++ +LD LEE M
Sbjct: 163 VGLYDT-TPLLDTNSLEENAM 182
>gi|50307027|ref|XP_453491.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49642625|emb|CAH00587.1| KLLA0D09625p [Kluyveromyces lactis]
Length = 245
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 81/200 (40%), Gaps = 41/200 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR N+LR CS + A +S+ +
Sbjct: 13 RVDGRRWNELRSFNCSINTHPNAADGSSYLE----------------------------- 43
Query: 65 SGDTKVLAAVYGPKAGTKKNE-NPEKASIEVIWK-------PRTGQIGKPEK---EYEII 113
G+ K++ V GP+ + +++ N ++A++ V R+ K E+ E++
Sbjct: 44 QGNNKIITLVAGPQEPSSRSQVNTKQATLSVTINLTKFAKMERSKSSHKNERRTLEWQAS 103
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
L RT + +L + P T+ V + + DG +L +N AL+DAGI M +
Sbjct: 104 LVRTFEKNLMLHLYPRTSIDVQVHALQLDGGILGAMLNGITLALIDAGIAMYDFVSGVSV 163
Query: 174 CSAESGYCILDPTKLEEQKM 193
++ +LD LEE M
Sbjct: 164 GLYDT-TPLLDLNSLEENAM 182
>gi|452211130|ref|YP_007491244.1| Ribonuclease PH [Methanosarcina mazei Tuc01]
gi|452101032|gb|AGF97972.1| Ribonuclease PH [Methanosarcina mazei Tuc01]
Length = 465
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 65/143 (45%), Gaps = 14/143 (9%)
Query: 57 CYFCYWVGSGDTKVLAAVYGPK-AGTKKNENPEKASIEVIWKPRTGQI------GKPEKE 109
CY + G K+L V+GP+ A ++++ + A I + + + G +
Sbjct: 15 CYLEW----GRNKILVGVFGPREAHPRRSQRADSAVIRYRYNMASFSVEDRARPGPSRRS 70
Query: 110 YEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHL 167
EI + + + + + + P T + ++V+ D AINA+ AL DAGIPMK L
Sbjct: 71 IEISKVSREAFEPVIMAELFPKTAIDIFVEVLQADAGTRTAAINASSIALADAGIPMKGL 130
Query: 168 AVAICCCSAESGYCILDPTKLEE 190
+ C G +LD K E+
Sbjct: 131 -ITSCAFGKVDGKIVLDLNKEED 152
>gi|119479959|ref|XP_001260008.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
putative [Neosartorya fischeri NRRL 181]
gi|119408162|gb|EAW18111.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
putative [Neosartorya fischeri NRRL 181]
Length = 269
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 60/133 (45%), Gaps = 17/133 (12%)
Query: 62 WVGSGDTKVLAAVYGPKAGTKKNENPEKASIE---------------VIWKPRTGQIGKP 106
++ G+T ++ +V+GP G + + A V + R G +
Sbjct: 42 FLSMGNTSIMCSVHGPAEGKRGDATGGAAGSAGAVVEVDVNVAGFAGVDRRRRAGGSDRQ 101
Query: 107 EKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKH 166
IL+ QS + P++T S+ + V+ DG+LL A+NA ALVDAGIPM
Sbjct: 102 SSRIATILRSAFQSHLHTHLYPHSTISIHVSVLSADGSLLAAAVNACTLALVDAGIPMPG 161
Query: 167 LAVAICCCSAESG 179
L A C S SG
Sbjct: 162 LLSA--CTSGMSG 172
>gi|340924154|gb|EGS19057.1| hypothetical protein CTHT_0056790 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 258
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 15/111 (13%)
Query: 70 VLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPN 129
V A+V GP +++E+P +A ++VI +P G G E+ E IL+ + I ++ P
Sbjct: 33 VTASVNGPIEAQRRDEHPYEAHVDVIVRPAAGVGGTRERHLESILQSSFAQIILVKSFPR 92
Query: 130 TTTSVIIQVVHD---------------DGALLPCAINAACAALVDAGIPMK 165
+ +++QV + A++P A AL+ AG+PM+
Sbjct: 93 SLIQIVLQVEESPENEYVNTKLVQASLNFAVMPALFQTAMLALLSAGVPMR 143
>gi|50288675|ref|XP_446767.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526075|emb|CAG59694.1| unnamed protein product [Candida glabrata]
Length = 246
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 65/271 (23%), Positives = 104/271 (38%), Gaps = 61/271 (22%)
Query: 5 RADGRNPNQLRPLACSCSIL-HRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWV 63
R DGR N+LR + + H A GS+ QG
Sbjct: 13 RLDGRRWNELRRFESAINTHPHAADGSSYLEQG--------------------------- 45
Query: 64 GSGDTKVLAAVYGPKAGTKKNE-NPEKASIEVIWK-------PRTGQIGKPEK---EYEI 112
+ KV+ V GPK T K++ + +KA ++V R+ K E+ E +
Sbjct: 46 ---NNKVITLVKGPKEPTLKSQMDIQKAILKVTVNITKFSKFERSKSSHKNERRVLEMQT 102
Query: 113 ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAIC 172
L RT + +L + P T + I V+ DG ++ +N AL+DAGI M I
Sbjct: 103 ALVRTFEKNVMLHVYPRTLIDIEIHVLQQDGGIMGTLLNGISLALIDAGIAMYDYVSGIS 162
Query: 173 CCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHG 232
++ +LD LEE M V S E SL+Q E
Sbjct: 163 VGLYDT-TPLLDINSLEENAMSAVTLGVVGKS------EKLSLLQIED------------ 203
Query: 233 AMSVDDYFHCLERGRAASAKLSDFLRRSLQS 263
+ +D + L G A + ++ D + + +++
Sbjct: 204 KIPLDRIENVLAIGIAGAHRIRDLMEQEIRA 234
>gi|320582632|gb|EFW96849.1| hypothetical protein HPODL_1559 [Ogataea parapolymorpha DL-1]
Length = 222
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 62/128 (48%), Gaps = 7/128 (5%)
Query: 66 GDTKVLAAVYGP-KAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICIL 124
G TKV+++V GP ++ +NE P KA +++ +P +G E E L + L ++ L
Sbjct: 22 GATKVISSVTGPIESARPRNELPTKAYLDINIRPSSGVPSTRETLLEHKLGQLLPTVINL 81
Query: 125 TINPNTTTSVIIQVVHD------DGALLPCAINAACAALVDAGIPMKHLAVAICCCSAES 178
P T + +Q++ + L IN+ AL+++GI +K +A CC +
Sbjct: 82 DQYPRQTIQIAVQILKNGEPKEYTARQLVAIINSVFVALINSGISLKSSFMATCCSISTE 141
Query: 179 GYCILDPT 186
G PT
Sbjct: 142 GEIKTSPT 149
>gi|431908123|gb|ELK11726.1| Exosome complex exonuclease RRP41 [Pteropus alecto]
Length = 287
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/241 (20%), Positives = 86/241 (35%), Gaps = 88/241 (36%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +LR + + +A GSA ++
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSA------------------------------YIE 42
Query: 65 SGDTKVLAAVYGPKA--------------------------------------------G 80
G+TK LA VYGP G
Sbjct: 43 QGNTKALAVVYGPHEASGRAPGAGGGLGRRRPAHASVYAAHIPGRFNRSKSQSPRTAIRG 102
Query: 81 TKKNENPEKASIEVIWKPRTGQIGKPEK---------EYEIILKRTLQSICILTINPNTT 131
++ P++A + + T G+ ++ E + L++T ++ + ++P +
Sbjct: 103 SRSRALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPCSQ 162
Query: 132 TSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAE--SGYCILDPTKLE 189
+ +QV+ DG +NAA A++DAGIP++ +C CSA G + D + +E
Sbjct: 163 IDIYVQVLQADGGTYAACVNAATLAVLDAGIPVRDF---VCACSAGFVDGTALADLSHVE 219
Query: 190 E 190
E
Sbjct: 220 E 220
>gi|449667396|ref|XP_002164788.2| PREDICTED: exosome complex component MTR3-like [Hydra
magnipapillata]
Length = 212
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 85/195 (43%), Gaps = 22/195 (11%)
Query: 62 WVGSGDTKVLAAVYGPKAGTKKNENPEKASI--EVI-----WKPRTGQIGKPEKEYEIIL 114
+V + DTK++ AVYGP+ K+++ K +I EV W R KEY +
Sbjct: 16 YVETCDTKLICAVYGPRDNPKRHQFSSKGNIFCEVTFAPFSWHERVSNQDSLSKEYSSAI 75
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
+ +S L P + I ++ G L A AA AL DAGI M L + C
Sbjct: 76 VQAFESAVCLESYPKAQIDIYINILEYSGNCLSYAFIAASIALADAGIEMLDLVTS--CE 133
Query: 175 SAESG------YCILDPTKLEEQKMKG---FAYLVFPNSILSVLPEGSSLVQGEPMEHGI 225
SA S C+ DP+ E KG AY+ N I + +G + + M++ +
Sbjct: 134 SAFSNETSIQRVCV-DPSGEEVSLCKGRVVIAYMPSLNKISYLSMQGEETID-DSMQN-V 190
Query: 226 ITSVTHGAMSVDDYF 240
IT + G + + Y
Sbjct: 191 ITCI-EGCLRIYKYM 204
>gi|354543692|emb|CCE40413.1| hypothetical protein CPAR2_104490 [Candida parapsilosis]
Length = 219
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 59/125 (47%), Gaps = 7/125 (5%)
Query: 68 TKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTIN 127
TK L +V GP + E P +AS+E+I +P +G EK E L+ LQS+ I
Sbjct: 22 TKCLVSVSGPIEPKVRQELPTQASLEIIVRPSSGLSTTREKLLEDKLRSLLQSLIIRYKY 81
Query: 128 PNTTTSVIIQ-VVHDDGALLPC-----AINAACAALVDAGIPMKHLAVAICCCSAESGYC 181
P ++IQ +V D+ C AIN AL+DA + + + C SG
Sbjct: 82 PRQLIQIVIQFLVVDEQPEYTCNELNAAINGCYFALIDADMALYSSFASTSVC-INSGNL 140
Query: 182 ILDPT 186
I DPT
Sbjct: 141 IYDPT 145
>gi|84490039|ref|YP_448271.1| exosome complex exonuclease Rrp41 [Methanosphaera stadtmanae DSM
3091]
gi|84373358|gb|ABC57628.1| putative exosome complex, exonuclease 1 subunit [Methanosphaera
stadtmanae DSM 3091]
Length = 232
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 78/200 (39%), Gaps = 42/200 (21%)
Query: 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCY 61
E R DGR N LR + +L+ A GSA
Sbjct: 4 EFIRKDGRAYNTLRNMKMEVGVLNNADGSA------------------------------ 33
Query: 62 WVGSGDTKVLAAVYGPKA-GTKKNENPEKASIE---------VIWKPRTGQIGKPEKEYE 111
++ G+ K+L VYGP+ +KK+ P+ A + V + R G + E
Sbjct: 34 YIECGNNKILVGVYGPREIHSKKHSKPDGAVLRCKYNMAPFSVKERKRPGP-NRRSTEIS 92
Query: 112 IILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAI 171
++ + L P + + I+V+ +G I A AL DA IPMK L ++
Sbjct: 93 KLISEAITPNIFLEKYPRASIDISIEVLEAEGGTRCLGIVGASLALADAEIPMKDL-ISA 151
Query: 172 CCCSAESGYCILDPTKLEEQ 191
C + +LD ++ E+Q
Sbjct: 152 CAVGKVDDHIVLDLSEQEDQ 171
>gi|336275813|ref|XP_003352660.1| hypothetical protein SMAC_01493 [Sordaria macrospora k-hell]
gi|380094550|emb|CCC07930.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 273
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 75/170 (44%), Gaps = 28/170 (16%)
Query: 62 WVGSGDTKVLAAVYGP------KAGTK-------KNENPEKASIEVIW------KPRTGQ 102
++ G TKV+ V GP + T +++N E A VI + R G+
Sbjct: 41 YLEMGHTKVMCVVNGPSEPGPRRGATSGGGGGGGQSKNAEVAVNIVIAGFSSVDRKRRGR 100
Query: 103 IGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGI 162
K E + + + L + + P++T ++ + V+ DG+LL INAA A VDAGI
Sbjct: 101 GDKHILELQSTISQALAASLHTHLFPHSTINISLHVLSQDGSLLAALINAATLACVDAGI 160
Query: 163 PMKHLAVAICCCSAESGYC--------ILDPTKLEEQKMKGFAYLVFPNS 204
PM VA C + S Y +LD EEQ++ G +S
Sbjct: 161 PMTDY-VAACTAGSTSTYAANDEGADPLLDMNHQEEQELPGLTVATLGDS 209
>gi|410084138|ref|XP_003959646.1| hypothetical protein KAFR_0K01570 [Kazachstania africana CBS 2517]
gi|372466238|emb|CCF60511.1| hypothetical protein KAFR_0K01570 [Kazachstania africana CBS 2517]
Length = 220
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 89/213 (41%), Gaps = 29/213 (13%)
Query: 69 KVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTI-- 126
KV+ +V GP + E P + ++EV +P IG P EI L+ ++ + I
Sbjct: 23 KVICSVTGPIEPKARQELPTQLALEVTVRP---AIGVPTTR-EITLQDKIRGVISPIICR 78
Query: 127 --NPNTTTSVIIQVVH--------DDGALLPCAINAACAALVDAGIPMKHLAVAICCCSA 176
P + +Q++ + L+ C IN+ AL+DA I + +AV +
Sbjct: 79 YKYPRQLCQITLQILESGEEETLFNVKELIGC-INSTVFALIDAAIAINSIAVGVSMAVM 137
Query: 177 ESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSV 236
G I+DP+ + +K LVF LV G + ++ + G
Sbjct: 138 GDGTFIVDPSNEQLKKSVSTHALVF------------QLVDGSKVVENVLLLDSFGNFDE 185
Query: 237 DDYFHCLERGRAASAKLSDFLRRSLQSKLPGDL 269
F LE G + L+ R+++++K+ DL
Sbjct: 186 STLFEVLEYGEKHALSLAKDFRKTIETKIKKDL 218
>gi|350295872|gb|EGZ76849.1| ribosomal protein S5 domain 2-like protein [Neurospora tetrasperma
FGSC 2509]
Length = 273
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 74/170 (43%), Gaps = 28/170 (16%)
Query: 62 WVGSGDTKVLAAVYGPK-------------AGTKKNENPEKASIEVIW------KPRTGQ 102
++ G TKV+ V GP G +++N E A VI + R G+
Sbjct: 41 YLEMGHTKVMCVVNGPSEPGPRRGATSGGGGGGGQSKNAEVAVNIVIAGFSSVDRKRRGR 100
Query: 103 IGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGI 162
K E + + + L + + P++T ++ + V+ DG+LL INAA A VDAGI
Sbjct: 101 GDKHILELQSTISQALAASLHTHLFPHSTINISLHVLSQDGSLLAALINAATLACVDAGI 160
Query: 163 PMKHLAVAICCCSAESGYC--------ILDPTKLEEQKMKGFAYLVFPNS 204
PM VA C + S Y +LD EEQ++ G +S
Sbjct: 161 PMTDY-VAACTAGSTSTYAANDEGADPLLDMNHQEEQELPGLTVATLGDS 209
>gi|315658436|ref|ZP_07911308.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
lugdunensis M23590]
gi|315496765|gb|EFU85088.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
lugdunensis M23590]
Length = 698
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 81/184 (44%), Gaps = 25/184 (13%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P+++RPL IL RAHGS +++G QT L V T Y +
Sbjct: 319 RPDGRKPDEIRPLESEVGILPRAHGSGLFTRG----QTQ-----ALSVLTLGALGDYQII 369
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQI---GKPEKEYEIILKRTLQSI 121
G GP+ + + + V TG + G+ E + + +R L+ I
Sbjct: 370 DG--------LGPEQEKRFMHHYNFPNFSV---GETGPVRAPGRREIGHGALGERALRHI 418
Query: 122 CILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKH--LAVAICCCSAESG 179
T T ++ +V+ +G+ +I + AL+DAG+P+K +A+ + E
Sbjct: 419 IPDTSKFPYTIRIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDS 478
Query: 180 YCIL 183
Y IL
Sbjct: 479 YTIL 482
>gi|254580403|ref|XP_002496187.1| ZYRO0C12496p [Zygosaccharomyces rouxii]
gi|238939078|emb|CAR27254.1| ZYRO0C12496p [Zygosaccharomyces rouxii]
Length = 224
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 91/216 (42%), Gaps = 20/216 (9%)
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICIL 124
S TKV+ +V GP + E P + ++E+I +P G EK E L+ L +
Sbjct: 21 SHSTKVVCSVTGPIEPKARQELPTQLALEIIVRPAKGVPNTREKLIEDKLRGVLTPLIAR 80
Query: 125 TINPNTTTSVIIQVVHD-------DGALLPCAINAACAALVDAGIPMKHLAVAICCCSAE 177
+ P + QV+ L C INAA ALVD+GI + +A ++ +
Sbjct: 81 YLYPRRLCQITFQVMEAGEPELEFSQRELSCCINAAVLALVDSGIGLLAMASSVPLAIIK 140
Query: 178 SGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVD 237
G ++DP + Q+ + L L + G ++ I+ + GA + +
Sbjct: 141 -GQLVVDPNAQQLQESQSVHTLA-----LEITESGKNV-------QNILLLDSTGAFTQN 187
Query: 238 DYFHCLERGRAASAKLSDFLRRSLQSKLPGDLSKAE 273
+ F L +G L LR+ L ++ ++ + +
Sbjct: 188 ELFQILSQGEERCLTLVQELRKVLGDRINSEIIRTK 223
>gi|149245090|ref|XP_001527079.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146449473|gb|EDK43729.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 234
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 67/145 (46%), Gaps = 11/145 (7%)
Query: 68 TKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTIN 127
TKVL +V GP + E P++AS+E+I +P G EK E L+ LQ+I I
Sbjct: 26 TKVLCSVSGPIEPKPRQELPQQASLEIIVRPARGLSTTREKLIEDKLRSLLQNIIIRYKY 85
Query: 128 PNTTTSVIIQ--VVHDDGAL----LPCAINAACAALVDAGIPM--KHLAVAICCCSAESG 179
P +++Q VV +D L AIN ALVDA + + +VA+C SG
Sbjct: 86 PRQLILIVVQFLVVDEDPVYLTNELSAAINCCFFALVDADVALYWSFASVAVCIKGDGSG 145
Query: 180 ---YCILDPTKLEEQKMKGFAYLVF 201
I PT E + F + F
Sbjct: 146 DGEQLIKSPTGKEIAQSDSFHVVCF 170
>gi|301097298|ref|XP_002897744.1| exosome complex exonuclease RRP41-like protein [Phytophthora
infestans T30-4]
gi|262106765|gb|EEY64817.1| exosome complex exonuclease RRP41-like protein [Phytophthora
infestans T30-4]
Length = 777
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 71/175 (40%), Gaps = 19/175 (10%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR ++R + + R GS+ + QG + + L
Sbjct: 26 RVDGRRSEEVRRIRTRFGLFSRVDGSSYYEQGNTKVVAVVYGPREL----------RTAA 75
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIW-------KPRTGQIGKPEKEYEIILK-R 116
+G AA G +G + +A++ + R Q K+ E+ L +
Sbjct: 76 AGSVNSGAAAVGTGSGNAASNTQPRATVNCEFTQAAFATSERKPQRSGDRKKLEMSLAVK 135
Query: 117 TLQSICILT-INPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVA 170
+ CI T + P + + +QV+H DG LP +INA AL+DAGI + VA
Sbjct: 136 QIFEACIQTQLYPRSQIDIFVQVLHADGGELPASINAITLALIDAGIALNDFVVA 190
>gi|156039812|ref|XP_001587013.1| hypothetical protein SS1G_12042 [Sclerotinia sclerotiorum 1980]
gi|154696099|gb|EDN95837.1| hypothetical protein SS1G_12042 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 261
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 77/191 (40%), Gaps = 50/191 (26%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR N+LR + S + GS+ ++
Sbjct: 14 RLDGRRWNELRRVTAQISTQPASDGSS------------------------------YLS 43
Query: 65 SGDTKVLAAVYGP-------KAGTKKNENP-EKASIEV---------IWKPRTGQIGKPE 107
G+T+VL V GP G N N EKA + V + + + G+ K
Sbjct: 44 MGNTQVLCTVTGPCDPSKLRSIGGGGNSNAGEKAEVRVEISFAGFAGVDRKKYGRNDKRI 103
Query: 108 KEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHL 167
+E L T + T+ N+T + + ++ DG+LL INA+ AL+DAGIPM
Sbjct: 104 QELSNTLSTTFTPHLLTTLTSNSTILLSLHILSLDGSLLSALINASTLALIDAGIPMPSY 163
Query: 168 AVAICCCSAES 178
IC C+A S
Sbjct: 164 ---ICACTAGS 171
>gi|407407934|gb|EKF31543.1| exosome complex exonuclease RRP41A, putative [Trypanosoma cruzi
marinkellei]
Length = 252
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 10/124 (8%)
Query: 57 CYFCYWVGSGDTKVLAAVYGPKAGTKKNENPEKASI---EVIWKPRTGQI-------GKP 106
C C V SG + V A+VYGP+ T + E I EV G+ K
Sbjct: 36 CDGCCTVMSGLSTVCASVYGPREVTNRLEGKYNECIVTCEVAIAAFAGEKRRAPQRRSKL 95
Query: 107 EKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKH 166
+E + +S+ +L+ PN+ + ++V+ DG+ INAAC ALVDA + M+
Sbjct: 96 SEEMSAAVLEVARSVVLLSQYPNSQIHICVEVLRQDGSDKAACINAACLALVDASVAMRD 155
Query: 167 LAVA 170
+ A
Sbjct: 156 IVYA 159
>gi|224146058|ref|XP_002325864.1| predicted protein [Populus trichocarpa]
gi|222862739|gb|EEF00246.1| predicted protein [Populus trichocarpa]
Length = 730
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 77/175 (44%), Gaps = 30/175 (17%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R+DGR P+++RP+ C IL RAHGSA +++G +T L
Sbjct: 380 RSDGRTPDRIRPIDSRCGILPRAHGSALFTRG----ETQSLAVVTL-------------- 421
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKP----RTGQIGKPEKE---YEIILKRT 117
GD ++ V E ++ ++ ++ P G+IG P + + ++++R
Sbjct: 422 -GDKQMAQRV----DNLVDEEEFKRFYLQYLFPPSCVGEVGRIGAPSRREIGHGMLVERA 476
Query: 118 LQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAIC 172
L+ I + T V + +G+ ++ C AL DAG+P+K + I
Sbjct: 477 LKPILPSDDDFPYTVRVESTITESNGSSSMASVCGGCLALQDAGVPVKCMIAGIA 531
>gi|256072702|ref|XP_002572673.1| ribonuclease pH related [Schistosoma mansoni]
gi|360044228|emb|CCD81775.1| ribonuclease pH related [Schistosoma mansoni]
Length = 258
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 81/212 (38%), Gaps = 45/212 (21%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR PN++R + C + +S G F+
Sbjct: 10 RVDGRRPNEIRRVDCQFG--------SGYSDGIVFLH----------------------- 38
Query: 65 SGDTKVLAAVYGPKA-GTKKNENPEKASI--EVIWKPRTGQIGKPEK---------EYEI 112
G+TKV+A+V GP A K + P+ A+I + P G+ K ++
Sbjct: 39 QGNTKVIASVVGPHAPRVKGDGTPDGATITCQFTKPPFASTSGERRKLSSKDRSANDFAT 98
Query: 113 ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAIC 172
++ + P + + ++V+ DG+ CA+NA AL DAGI M L V+
Sbjct: 99 AIEEIFSCVIRTEKYPMSQIDIFLEVIQSDGSEFACAVNATTLALTDAGIEMDCL-VSAA 157
Query: 173 CCSAESGYCILDPTKLEEQ-KMKGFAYLVFPN 203
+ D + EE ++ + PN
Sbjct: 158 TVGLWGSHVFADLCRFEENPRISQLTVVCLPN 189
>gi|336463800|gb|EGO52040.1| hypothetical protein NEUTE1DRAFT_89939 [Neurospora tetrasperma FGSC
2508]
Length = 273
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 75/170 (44%), Gaps = 28/170 (16%)
Query: 62 WVGSGDTKVLAAVYGP------KAGTK-------KNENPEKASIEVIW------KPRTGQ 102
++ G TKV+ + GP + T +++N E A VI + R G+
Sbjct: 41 YLEMGHTKVMCVINGPSEPGPRRGATSGGGGGGGQSKNAEVAVNIVIAGFSSVDRKRRGR 100
Query: 103 IGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGI 162
K E + + + L + + P++T ++ + V+ DG+LL INAA A VDAGI
Sbjct: 101 GDKHILELQSTISQALAASLHTHLFPHSTINISLHVLSQDGSLLAALINAATLACVDAGI 160
Query: 163 PMKHLAVAICCCSAESGYC--------ILDPTKLEEQKMKGFAYLVFPNS 204
PM VA C + S Y +LD EEQ++ G +S
Sbjct: 161 PMTDY-VAACTAGSTSTYAANDEGADPLLDMNHQEEQELPGLTVATLGDS 209
>gi|407849042|gb|EKG03905.1| exosome complex exonuclease RRP41A, putative [Trypanosoma cruzi]
Length = 252
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 10/124 (8%)
Query: 57 CYFCYWVGSGDTKVLAAVYGPKAGTKKNENPEKASI---EVIWKPRTGQI-------GKP 106
C C V SG V A+VYGP+ T + E+ I EV G+ K
Sbjct: 36 CDGCCTVMSGLATVCASVYGPREVTNRLESKYNECIITCEVAIAAFAGEKRRAPQRRSKL 95
Query: 107 EKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKH 166
+E + +S+ +L+ PN+ + ++V+ DG+ INAAC ALVDA + M+
Sbjct: 96 SEEMSAAVLEVARSVVLLSQYPNSQIHICVEVLRQDGSDKAACINAACLALVDASVAMRD 155
Query: 167 LAVA 170
+ A
Sbjct: 156 IVYA 159
>gi|71649471|ref|XP_813459.1| exosome complex exonuclease RRP41A [Trypanosoma cruzi strain CL
Brener]
gi|70878342|gb|EAN91608.1| exosome complex exonuclease RRP41A, putative [Trypanosoma cruzi]
Length = 195
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 10/124 (8%)
Query: 57 CYFCYWVGSGDTKVLAAVYGPKAGTKKNENPEKASI---EVIWKPRTGQI-------GKP 106
C C V SG V A+VYGP+ T + E+ I EV G+ K
Sbjct: 36 CDGCCTVMSGLATVCASVYGPREVTNRLESKYNECIITCEVAIAAFAGEKRRAPQRRSKL 95
Query: 107 EKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKH 166
+E + +S+ +L+ PN+ + ++V+ DG+ INAAC ALVDA + M+
Sbjct: 96 SEEMSAAVLEVARSVVLLSQYPNSQIHICVEVLRQDGSDKAACINAACLALVDASVAMRD 155
Query: 167 LAVA 170
+ A
Sbjct: 156 IVYA 159
>gi|348678286|gb|EGZ18103.1| hypothetical protein PHYSODRAFT_504652 [Phytophthora sojae]
Length = 713
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 69/191 (36%), Gaps = 55/191 (28%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR ++R + + R GSA + QG
Sbjct: 28 RVDGRRSEEVRRIRTRFGLFSRVDGSAYYEQG---------------------------- 59
Query: 65 SGDTKVLAAVYGPK-----------------AGTKKNENPEKA-SIEVIWKPRTGQIGKP 106
+TKV+A VYGP+ N P + E KP
Sbjct: 60 --NTKVVAVVYGPRELRVGPAGGAAAVGTGSGNAASNTQPRAVVNCEFTQAAFATSERKP 117
Query: 107 EK-------EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVD 159
++ E + +K+ ++ + P + + +QV+H DG LP +INA AL+D
Sbjct: 118 QRSGDRKKVEMSLAVKQIFEACVQTQLYPRSQIDIFVQVLHADGGELPASINAITLALID 177
Query: 160 AGIPMKHLAVA 170
AGI + VA
Sbjct: 178 AGIALNDFVVA 188
>gi|156086228|ref|XP_001610523.1| exosome complex exonuclease rrp41 [Babesia bovis T2Bo]
gi|154797776|gb|EDO06955.1| exosome complex exonuclease rrp41, putative [Babesia bovis]
Length = 259
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 63/140 (45%), Gaps = 13/140 (9%)
Query: 62 WVGSGDTKVLAAVYGP--------KAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEII 113
V G TKV A + GP K G + ++P + EV +G + +
Sbjct: 45 QVTQGLTKVQAFINGPTDIGRSKTKEGFETADSPVEIRCEVCIPSERKSMGHRNNDATVE 104
Query: 114 LKR----TLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAV 169
+ R T + + I + N+T + + V+ DG + INA AL+DAGI MK + V
Sbjct: 105 ISRAVVGTFEPVIISHLYKNSTIHIFVNVLEADGGVKATVINAVLIALIDAGIAMKDIIV 164
Query: 170 AICCCSAESGYCILDPTKLE 189
A C + ++DP +LE
Sbjct: 165 A-CTAVMLNETLLIDPNQLE 183
>gi|345561898|gb|EGX44970.1| hypothetical protein AOL_s00173g71 [Arthrobotrys oligospora ATCC
24927]
Length = 267
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 58/120 (48%), Gaps = 11/120 (9%)
Query: 61 YWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQS 120
Y + T +L +V GP K+E P A+IEVI KP G G E ++ TLQS
Sbjct: 24 YTCPTSRTTILTSVNGPLEVRPKDELPNHATIEVIVKPGIGVAGVRETRLSSLIHSTLQS 83
Query: 121 ICILTINPNTTTSVIIQVVHDDG-----ALLPCAINAACAALVDAGIPMK------HLAV 169
+ + +P T ++ Q+V + LL +N +L+ AGIPM+ HLAV
Sbjct: 84 LILTNHHPRTLIQIVAQIVQAEDHTSLPLLLTPLLNCTILSLLIAGIPMRTVGWSVHLAV 143
>gi|358399876|gb|EHK49213.1| hypothetical protein TRIATDRAFT_49744 [Trichoderma atroviride IMI
206040]
Length = 274
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 87/217 (40%), Gaps = 59/217 (27%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR N LR L A GS+ ++
Sbjct: 14 RIDGRRWNDLRRLHAQIHTQDAADGSS------------------------------YLE 43
Query: 65 SGDTKVLAAVYGP---KAGTKKNE--------NPEKASIEV---------IWKPRTGQIG 104
G TKV+ V GP +AG KK E ASI V + + R G+
Sbjct: 44 MGHTKVMCVVTGPAEPQAGQKKGTVGSAQATGQKEGASIVVNVVVAGFSSVDRKRRGRND 103
Query: 105 KPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPM 164
+ +E EI +++ L + + P++T +V + V+ DG+LL INA A++DAGIPM
Sbjct: 104 RRIQEMEITIQKALAANLHTHLFPHSTITVSLHVLSQDGSLLAALINATTLAVIDAGIPM 163
Query: 165 KHLAVAICCCSAESGYC--------ILDPTKLEEQKM 193
A C + S Y +LD EEQ++
Sbjct: 164 TDYITA-CTAGSTSSYAAGDDAADPLLDLNTQEEQEL 199
>gi|14250906|emb|CAC39258.1| Rrp41p homologue [Trypanosoma brucei]
Length = 252
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 63/127 (49%), Gaps = 10/127 (7%)
Query: 51 FVFTSKCYFCYWVGSGDTKVLAAVYGPKAGTKKNE---NPEKASIEVIWKPRTGQIGKPE 107
F S C C V SG + V A VYGP+ + + + N + +V+ G+ + +
Sbjct: 30 FGKISGCDGCCTVVSGLSHVCATVYGPREVSNRLDGKYNEVTITCDVVVAAFAGERRREQ 89
Query: 108 KEY----EIILKRTL---QSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDA 160
+ Y E I L +S+ +L+ PN+ + I+V+ DG+ INAAC AL+DA
Sbjct: 90 QRYSRLSEDISASVLDVARSVVLLSQYPNSQIHICIEVLKQDGSDKAACINAACLALIDA 149
Query: 161 GIPMKHL 167
I M+ +
Sbjct: 150 SIAMRDV 156
>gi|253995588|ref|YP_003047652.1| polynucleotide phosphorylase/polyadenylase [Methylotenera mobilis
JLW8]
gi|253982267|gb|ACT47125.1| 3' exoribonuclease [Methylotenera mobilis JLW8]
Length = 709
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 80/184 (43%), Gaps = 35/184 (19%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR+ +RP++ +L R HGSA +++G ++ +G
Sbjct: 316 RIDGRDTRTVRPISIRTGVLPRTHGSALFTRG-----------------ETQALVVATLG 358
Query: 65 SG-DTKVLAAVYGPKAGTKKNENPEKASIEVIWKP----RTGQIGKPEKEYEI----ILK 115
+G D +++ A+ G E ++ + P TG++G P K EI + K
Sbjct: 359 TGRDEQIIDALQG--------EYADRFMLHYNMPPYATGETGRVGTP-KRREIGHGRLAK 409
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
R L + + + T V+ ++ +G+ ++ C AL+DAG+PMK+ I
Sbjct: 410 RALVAALPAKEDFDYTMRVVSEITESNGSSSMASVCGGCLALMDAGVPMKNHVAGIAMGL 469
Query: 176 AESG 179
+ G
Sbjct: 470 IKEG 473
>gi|2286200|gb|AAC50039.1| polynucleotide phosphorylase [Pisum sativum]
Length = 897
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 78/168 (46%), Gaps = 30/168 (17%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R+DGR P ++RP+ SCSIL RAHGSA +++G +T L
Sbjct: 444 RSDGRTPKEIRPINSSCSILPRAHGSALFTRG----ETQALAVATL-------------- 485
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKP----RTGQIGKPEKE---YEIILKRT 117
GD K+ + + ++ ++ ++ + P G+IG P + + ++ +R+
Sbjct: 486 -GDNKMAQRIN----NLIEVDDYKRFYLQYSFPPSCVGEAGRIGAPSRREIGHGMLAERS 540
Query: 118 LQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMK 165
L++I + T V + +G+ ++ C AL DAG+P+K
Sbjct: 541 LETILPSDNDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIK 588
>gi|341891925|gb|EGT47860.1| CBN-EXOS-4.2 protein [Caenorhabditis brenneri]
Length = 240
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 73/204 (35%), Gaps = 35/204 (17%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFC 60
ME D R+ RPL C + GS + F
Sbjct: 23 MEAIEMDKRSATTFRPLCVKCGVFGAQDGSG-------------YAEF------------ 57
Query: 61 YWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQS 120
G+T+VLA + GP K E+ K ++ + QI EY L + S
Sbjct: 58 -----GNTRVLAQIIGPDGDGKWEEDHAKITVTLKGLENEKQIA----EYRAELMSSASS 108
Query: 121 ICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGY 180
+ + P + + V+ DDG +L A++A AL +GI L ++ +
Sbjct: 109 VIFINKYPGKVIEIEVTVLSDDGGVLSAALSAVTLALAHSGIEHMGLTASVHVGMRANED 168
Query: 181 CILDPTKLEE-QKMKGFAYLVFPN 203
I DP+ E + G + PN
Sbjct: 169 YITDPSTSESADTLGGVTFAFVPN 192
>gi|167043479|gb|ABZ08176.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
microorganism HF4000_APKG2H5]
Length = 238
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 89/213 (41%), Gaps = 47/213 (22%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P LRP++ ++ A GSA G T+H
Sbjct: 16 RMDGRKPADLRPISIEVGVVPVAAGSACVRWG-----TNH-------------------- 50
Query: 65 SGDTKVLAAVYGP-KAGTKKNENPEKASIEVIW---------KPRTGQIGKPEKEYEIIL 114
V+AAVYGP +A +K ++A ++V + + R G + +E +
Sbjct: 51 -----VIAAVYGPMEAHPRKISRQDRAVLDVRYNMAPFSTTDRIRPG-FNRRSREISKVT 104
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
L+S+ +L + P + V I+++ + + AA AL AGIPM + V++
Sbjct: 105 SDALESVVLLEMYPRSKIRVEIEILCAEAGTRCVGLTAASVALAHAGIPMTDMVVSVASG 164
Query: 175 SAESGYCILDPTKLEEQKMKGFAYL---VFPNS 204
+G I D K E+ G A L + PNS
Sbjct: 165 KI-NGVVICDLNK--EEDNYGEADLPMGMLPNS 194
>gi|417643550|ref|ZP_12293592.1| polyribonucleotide nucleotidyltransferase [Staphylococcus warneri
VCU121]
gi|445059807|ref|YP_007385211.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus warneri
SG1]
gi|330685657|gb|EGG97298.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis VCU121]
gi|443425864|gb|AGC90767.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus warneri
SG1]
Length = 699
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 76/181 (41%), Gaps = 19/181 (10%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P+++RPL +L RAHGS +++G QT L +G
Sbjct: 319 RPDGRKPDEIRPLESEVGLLPRAHGSGLFTRG----QTQALSVLTLGAL-GDYQLIDGLG 373
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICIL 124
+ K Y + P +A G+ E + + +R L+ I
Sbjct: 374 PEEEKRFMHHYNFPNFSVGETGPVRAP------------GRREIGHGALGERALKYIIPD 421
Query: 125 TINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKH--LAVAICCCSAESGYCI 182
T + T ++ +V+ +G+ +I + AL+DAG+P+K +A+ + E Y I
Sbjct: 422 TSDFPYTVRIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTI 481
Query: 183 L 183
L
Sbjct: 482 L 482
>gi|70726640|ref|YP_253554.1| polynucleotide phosphorylase [Staphylococcus haemolyticus JCSC1435]
gi|117940134|sp|Q4L5X7.1|PNP_STAHJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|68447364|dbj|BAE04948.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
haemolyticus JCSC1435]
Length = 700
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 81/184 (44%), Gaps = 25/184 (13%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P+++RPL +L RAHGS +++G QT L V T Y +
Sbjct: 319 RPDGRKPDEIRPLESEVGLLPRAHGSGLFTRG----QTQA-----LSVLTLGALGDYQLI 369
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQI---GKPEKEYEIILKRTLQSI 121
G GP+ + + + V TG + G+ E + + +R L+ I
Sbjct: 370 DG--------LGPEQEKRFMHHYNFPNFSV---GETGPVRAPGRREIGHGALGERALKYI 418
Query: 122 CILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKH--LAVAICCCSAESG 179
T T ++ +V+ +G+ +I + AL+DAG+P+K +A+ + E
Sbjct: 419 IPDTTEFPYTVRIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDS 478
Query: 180 YCIL 183
Y IL
Sbjct: 479 YTIL 482
>gi|312796906|ref|YP_004029828.1| Polyribonucleotide nucleotidyltransferase / Polynucleotide
adenylyltransferase [Burkholderia rhizoxinica HKI 454]
gi|312168681|emb|CBW75684.1| Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) /
Polynucleotide adenylyltransferase (EC 2.7.7.19)
[Burkholderia rhizoxinica HKI 454]
Length = 768
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 118/278 (42%), Gaps = 49/278 (17%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR+ +RP+ +L RAHGSA +++G ++ +G
Sbjct: 366 RIDGRDTRTVRPIEIRTGVLPRAHGSALFTRG-----------------ETQALVVATLG 408
Query: 65 S-GDTKVLAAVYGPKAGTKKNENPEKASIEVIWKP----RTGQIGKPEKEYEI----ILK 115
+ GD +++ A+ G E E+ + P TG++G P K EI + K
Sbjct: 409 TKGDEQIIDAIEG--------EYRERFMLHYNMPPFATGETGRVGSP-KRREIGHGRLAK 459
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMK-HLA-VAICC 173
R+L T V+ ++ +G+ ++ C AL+DAG+PMK H+A +A+
Sbjct: 460 RSLVPCLPGDDEFGYTIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGL 519
Query: 174 CSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGA 233
+ + +L +E + + V + +G + +Q + GI + A
Sbjct: 520 ILEGNKFAVLTDILGDEDHLGDMDFKVAGTA------QGVTALQMDIKIQGITKEIMQVA 573
Query: 234 MSV--DDYFHCLERGRAA----SAKLSDFLRRSLQSKL 265
++ + H L++ +A + +LS F R + K+
Sbjct: 574 LAQAREGRLHILDKMTSAVPSTNMQLSQFAPRMITMKI 611
>gi|239636247|ref|ZP_04677249.1| polyribonucleotide nucleotidyltransferase [Staphylococcus warneri
L37603]
gi|239597602|gb|EEQ80097.1| polyribonucleotide nucleotidyltransferase [Staphylococcus warneri
L37603]
Length = 598
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 82/184 (44%), Gaps = 25/184 (13%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P+++RPL +L RAHGS +++G QT L V T Y +
Sbjct: 218 RPDGRKPDEIRPLESEVGLLPRAHGSGLFTRG----QTQA-----LSVLTLGALGDYQLI 268
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQI---GKPEKEYEIILKRTLQSI 121
G GP+ + + + V TG + G+ E + + +R L+ I
Sbjct: 269 DG--------LGPEEEKRFMHHYNFPNFSV---GETGPVRAPGRREIGHGALGERALKYI 317
Query: 122 CILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKH--LAVAICCCSAESG 179
T + T ++ +V+ +G+ +I + AL+DAG+P+K +A+ + E
Sbjct: 318 IPDTSDFPYTVRIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDS 377
Query: 180 YCIL 183
Y IL
Sbjct: 378 YTIL 381
>gi|146414860|ref|XP_001483400.1| hypothetical protein PGUG_04129 [Meyerozyma guilliermondii ATCC
6260]
gi|146391873|gb|EDK40031.1| hypothetical protein PGUG_04129 [Meyerozyma guilliermondii ATCC
6260]
Length = 221
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 7/106 (6%)
Query: 66 GDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILT 125
G TKV+ +V GP ++E P ++S E+I +P G EK E L LQ++
Sbjct: 22 GGTKVVVSVTGPIEPKLRHELPTQSSFEIIIRPAVGVSSTREKLMEDKLLSLLQNVIARF 81
Query: 126 INPNTTTSVIIQVV-------HDDGALLPCAINAACAALVDAGIPM 164
NP ++IQ + H + L A NA AL+DA +P+
Sbjct: 82 QNPRQLIQIVIQFLITEPIPNHYTNSQLSAAANACYYALIDANVPL 127
>gi|342320046|gb|EGU11989.1| mRNA transport regulator 3 [Rhodotorula glutinis ATCC 204091]
Length = 270
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 111/273 (40%), Gaps = 59/273 (21%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR Q+RP+ ++ A GSA ++
Sbjct: 35 RRDGRLAAQVRPIFLQPGLVTEAAGSA------------------------------YIE 64
Query: 65 SGDTKVLAAVYGPKAGTKKNE-NPE-KASIEVIWKPRTGQIGK--PEKEYE-----IILK 115
+G TKVL AVYGPK NP+ + ++E+ + P + + P K+ E +L+
Sbjct: 65 AGRTKVLCAVYGPKPTPPSAPFNPKARLNVEIKFAPFASGVRRYVPGKDTEATGLAAVLQ 124
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDG--ALLPCAINAACAALVDAGIPMKHLAVAICC 173
++L +L P + + + V+ DG L + AA AL +AGIPM+ L +
Sbjct: 125 QSLLPSLLLETLPKSQIDLFVTVLESDGWDNDLSIGVTAASVALAEAGIPMRGL---VTA 181
Query: 174 CSA------ESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIIT 227
CSA S ILDPT+ E ++ F L + + L +SL ME ++
Sbjct: 182 CSATLLPTPNSKSAILDPTRDEARESSAFVSL----ACMPALGTVTSLRLSGAMEPDLLA 237
Query: 228 SVTHGAMSVDDYFHCLERGRAASAKLSDFLRRS 260
A V H + A L D RRS
Sbjct: 238 DTLAKAHEVCTLLHGV-----AKQALVDSARRS 265
>gi|294464676|gb|ADE77845.1| unknown [Picea sitchensis]
Length = 256
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 80/210 (38%), Gaps = 26/210 (12%)
Query: 66 GDTKVLAAVYGPKAGTKKNENPEKA------SIEVIWKPRTGQI--GKPEKEYEIILKRT 117
G TKV+ +V+GP+ +K + S P G++ G +EY +L +
Sbjct: 63 GSTKVIVSVFGPRESSKAQIYSDTGRLNCSVSFATFSTPIRGKLSQGTEHREYSTMLHKA 122
Query: 118 LQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAE 177
L+ +L P T V V+ G LP I A AL DAGI M + A+ S
Sbjct: 123 LEGAVMLNTFPKATVDVFALVLESGGGDLPVVITCATLALADAGIMMFDVVSAVSVSSIG 182
Query: 178 SGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVD 237
I+DPT EE +G +V P + I + G S
Sbjct: 183 KSL-IIDPTTEEEN-----------------CQDGGLMVACTPSRNEITQLIITGEWSST 224
Query: 238 DYFHCLERGRAASAKLSDFLRRSLQSKLPG 267
LE A +KL+ +R L+ G
Sbjct: 225 RVSEALELCLDACSKLAAIMRSCLKEAASG 254
>gi|403303026|ref|XP_003942148.1| PREDICTED: uncharacterized protein LOC101043625 [Saimiri
boliviensis boliviensis]
Length = 413
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 109 EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLA 168
E + L++T ++ + ++P + + +QV+ DG +NAA A++DAGIPM+
Sbjct: 266 EMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDF- 324
Query: 169 VAICCCSAE--SGYCILDPTKLEE 190
+C CSA G + D + +EE
Sbjct: 325 --VCACSAGFVDGTALADLSHVEE 346
>gi|326473180|gb|EGD97189.1| exosome complex endonuclease 1/ribosomal RNA processing protein
[Trichophyton tonsurans CBS 112818]
Length = 286
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 58/117 (49%), Gaps = 9/117 (7%)
Query: 62 WVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIG---KPEKEYEIILKRTL 118
++ G+T VL V+GP G K++E A+ + K TG G + E L+
Sbjct: 42 YLSMGNTAVLCTVHGPAEG-KRSETAGAAAQK--KKSTTGSGGGDRQATTELANSLRDAF 98
Query: 119 QSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
Q + P +T SV + V+ DG+L +NA ALVDAGIPM L +C C+
Sbjct: 99 QPHIHAHLYPRSTISVHVSVLSSDGSLFAACLNACTLALVDAGIPMPGL---LCACT 152
>gi|302925936|ref|XP_003054194.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256735135|gb|EEU48481.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 250
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/240 (21%), Positives = 97/240 (40%), Gaps = 54/240 (22%)
Query: 66 GDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILT 125
G ++AAV GP +++EN +A ++VI +P G G E++ E IL+ L+ + +
Sbjct: 26 GGYTIVAAVNGPVEAQRRDENAFEALVDVIVRPAAGVGGTRERQLESILQAALRQLIPVR 85
Query: 126 INPNTTTSVIIQVVHD---------------DGALLPCAINAACAALVDAGIPMKHLAVA 170
P + +QV + ++P +++A +L+ A I +K + A
Sbjct: 86 DYPRCVIQITLQVAETPENAYVNTKLSQSQLNLPIIPALLHSAILSLLSAAISLKAIGAA 145
Query: 171 -ICCCSAESGY-CILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITS 228
+ E G I+DPT +E K L F + +L E
Sbjct: 146 TVLAIPEEEGKDIIVDPTAVEVDHAKSVHALGFTSHDELLLAE----------------- 188
Query: 229 VTHGAMSVDDYFHCLERGRA-------------------ASAKLSDFLRRSLQSKLPGDL 269
+ G+ S D++ L+ G+ S ++ F+R +++K+ DL
Sbjct: 189 -SEGSFSPDEWAKVLQLGQRICCEHQQPGFDTSMAGNDLESKSMTQFIRSVMEAKVAEDL 247
>gi|288560609|ref|YP_003424095.1| exosome complex exonuclease Rrp41 [Methanobrevibacter ruminantium
M1]
gi|288543319|gb|ADC47203.1| exosome complex exonuclease Rrp41 [Methanobrevibacter ruminantium
M1]
Length = 236
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 82/207 (39%), Gaps = 60/207 (28%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR ++LRP+ +L RA GSA ++
Sbjct: 12 RGDGRAYDELRPIKIEAGVLKRADGSA------------------------------YLE 41
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQI-----------------GKPE 107
G K+LA+VYGP+ ++ I + KP TG I G
Sbjct: 42 VGGNKILASVYGPR----------ESYIRRLLKPNTGVIRVRYNMAPFSVDDRKRPGPDR 91
Query: 108 KEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMK 165
+ EI I L+ +L P + V I+V+ +G I AA AL DAGIPMK
Sbjct: 92 RSTEISKIAADALRPALMLESFPRSMVDVSIEVIEAEGGTRCAGITAAAVALADAGIPMK 151
Query: 166 HLAVAICCCSAESGYCILDPTKLEEQK 192
+ V C + +LD ++ E+++
Sbjct: 152 DIVVG-CAAGKVNDEIVLDLSEKEDKE 177
>gi|228475082|ref|ZP_04059810.1| polyribonucleotide nucleotidyltransferase [Staphylococcus hominis
SK119]
gi|228271067|gb|EEK12455.1| polyribonucleotide nucleotidyltransferase [Staphylococcus hominis
SK119]
Length = 698
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 81/184 (44%), Gaps = 25/184 (13%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P+++RPL +L RAHGS +++G QT L V T Y +
Sbjct: 319 RPDGRKPDEIRPLESEVGLLPRAHGSGLFTRG----QTQA-----LSVLTLGALGDYQLI 369
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQI---GKPEKEYEIILKRTLQSI 121
G GP+ + + + V TG + G+ E + + +R L+ I
Sbjct: 370 DG--------LGPEIEKRFMHHYNFPNFSV---GETGPVRAPGRREIGHGALGERALRYI 418
Query: 122 CILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKH--LAVAICCCSAESG 179
T T ++ +V+ +G+ +I + AL+DAG+P+K +A+ + E
Sbjct: 419 IPDTTEFPYTIRIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDS 478
Query: 180 YCIL 183
Y IL
Sbjct: 479 YTIL 482
>gi|418620428|ref|ZP_13183232.1| polyribonucleotide nucleotidyltransferase [Staphylococcus hominis
VCU122]
gi|374822558|gb|EHR86578.1| polyribonucleotide nucleotidyltransferase [Staphylococcus hominis
VCU122]
Length = 698
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 81/184 (44%), Gaps = 25/184 (13%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P+++RPL +L RAHGS +++G QT L V T Y +
Sbjct: 319 RPDGRKPDEIRPLESEVGLLPRAHGSGLFTRG----QTQA-----LSVLTLGALGDYQLI 369
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQI---GKPEKEYEIILKRTLQSI 121
G GP+ + + + V TG + G+ E + + +R L+ I
Sbjct: 370 DG--------LGPEIEKRFMHHYNFPNFSV---GETGPVRAPGRREIGHGALGERALRYI 418
Query: 122 CILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKH--LAVAICCCSAESG 179
T T ++ +V+ +G+ +I + AL+DAG+P+K +A+ + E
Sbjct: 419 IPDTTEFPYTIRIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDS 478
Query: 180 YCIL 183
Y IL
Sbjct: 479 YTIL 482
>gi|314936565|ref|ZP_07843912.1| polyribonucleotide nucleotidyltransferase [Staphylococcus hominis
subsp. hominis C80]
gi|313655184|gb|EFS18929.1| polyribonucleotide nucleotidyltransferase [Staphylococcus hominis
subsp. hominis C80]
Length = 698
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 81/184 (44%), Gaps = 25/184 (13%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P+++RPL +L RAHGS +++G QT L V T Y +
Sbjct: 319 RPDGRKPDEIRPLESEVGLLPRAHGSGLFTRG----QTQA-----LSVLTLGALGDYQLI 369
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQI---GKPEKEYEIILKRTLQSI 121
G GP+ + + + V TG + G+ E + + +R L+ I
Sbjct: 370 DG--------LGPEIEKRFMHHYNFPNFSV---GETGPVRAPGRREIGHGALGERALRYI 418
Query: 122 CILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKH--LAVAICCCSAESG 179
T T ++ +V+ +G+ +I + AL+DAG+P+K +A+ + E
Sbjct: 419 IPDTTEFPYTIRIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDS 478
Query: 180 YCIL 183
Y IL
Sbjct: 479 YTIL 482
>gi|340522690|gb|EGR52923.1| predicted protein [Trichoderma reesei QM6a]
Length = 287
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 9/94 (9%)
Query: 108 KEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHL 167
+E EI +++ L + + P++T +V + V+ DG+LL INA AL+DAGIPM
Sbjct: 120 QEMEITIQKALAANLHTHLFPHSTITVSLHVLSQDGSLLAALINATTLALIDAGIPMTDY 179
Query: 168 AVAICCCSAESGYC--------ILDPTKLEEQKM 193
A C + S Y +LD EEQ++
Sbjct: 180 ITA-CTAGSTSSYAAGDDSADPLLDLNTQEEQEL 212
>gi|365760507|gb|EHN02222.1| Ski6p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|401840726|gb|EJT43427.1| SKI6-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 246
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 78/201 (38%), Gaps = 43/201 (21%)
Query: 5 RADGRNPNQLRPLACSCSI-LHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWV 63
R DGR N+LR S + H A GS+ QG
Sbjct: 13 RLDGRRWNELRRFESSINTHSHAADGSSYLEQG--------------------------- 45
Query: 64 GSGDTKVLAAVYGPKAGTKKNE-NPEKASIEV---IWK----PRTGQIGKPEK---EYEI 112
+ K++ V GPK K++ + KA + V I K R+ K E+ E +
Sbjct: 46 ---NNKIITLVKGPKEPRLKSQMDTSKALLNVSVNITKFSKFERSKSSHKNERRVLEIQT 102
Query: 113 ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAIC 172
L R + +L I P T + I V+ DG ++ IN AL+DAGI M I
Sbjct: 103 SLVRMFEKNVMLNIYPRTVIDIEIHVLEQDGGIMGSLINGITLALIDAGISMFDYISGIS 162
Query: 173 CCSAESGYCILDPTKLEEQKM 193
++ +LD LEE M
Sbjct: 163 VGLYDT-TPLLDTNSLEENAM 182
>gi|355686798|gb|AER98190.1| exosome component 4 [Mustela putorius furo]
Length = 186
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 53/106 (50%), Gaps = 12/106 (11%)
Query: 80 GTKKNENPEKASIEVIWKPRTGQIGKPEK---------EYEIILKRTLQSICILTINPNT 130
G++ P++A + + T G+ ++ E + L++T ++ + ++P +
Sbjct: 2 GSRARALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRS 61
Query: 131 TTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSA 176
+ +QV+ DG +NAA A++DAG+PM+ +C CSA
Sbjct: 62 QIDIYVQVLQADGGTYAACVNAATLAVLDAGVPMRDF---VCACSA 104
>gi|401420330|ref|XP_003874654.1| putative exosome complex exonuclease rrp41 [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322490890|emb|CBZ26154.1| putative exosome complex exonuclease rrp41 [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 246
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 64/136 (47%), Gaps = 13/136 (9%)
Query: 51 FVFTSKCYFCYWVGSGDTKVLAAVYGPKAGTKKNENPEKASI---EVIWKPRTGQIGK-P 106
F S C + G +KV A+V+GP+ K E ++ EV G+ + P
Sbjct: 30 FGTLSACDGSCDITLGQSKVCASVFGPRESLHKQEAKHDKALVTCEVAVAAFAGENRRNP 89
Query: 107 EKEYEI------ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDA 160
++ + + + +S+ +L+ PN+ + I+V+ DG INAAC AL+DA
Sbjct: 90 QRRSRLSEDIGAAVVQVARSVILLSQYPNSQIHIYIEVLQQDGNEKIACINAACLALIDA 149
Query: 161 GIPMKHLAVAICCCSA 176
+ M+ A+CC A
Sbjct: 150 NVAMRD---AVCCIDA 162
>gi|242047540|ref|XP_002461516.1| hypothetical protein SORBIDRAFT_02g003900 [Sorghum bicolor]
gi|241924893|gb|EER98037.1| hypothetical protein SORBIDRAFT_02g003900 [Sorghum bicolor]
Length = 877
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 72/171 (42%), Gaps = 22/171 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R+DGR+P +LRP+ C +L RAHGSA +++G +T L + V
Sbjct: 424 RSDGRSPWELRPINSQCGLLPRAHGSALFTRG----ETQSLAVVTLGGYQMAQRIDNLVD 479
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKE---YEIILKRTLQSI 121
+ D+K Y P EV G+IG P + + ++ +R L+ I
Sbjct: 480 TEDSKSFYLQY---------SFPPSCVGEV------GRIGAPSRREIGHGMLAERALEPI 524
Query: 122 CILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAIC 172
+ T V + +G+ ++ C AL DAG+P+K I
Sbjct: 525 LPPEEDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKFPVAGIA 575
>gi|448262634|pdb|4IFD|B Chain B, Crystal Structure Of An 11-subunit Eukaryotic Exosome
Complex Bound To Rna
Length = 248
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 78/201 (38%), Gaps = 43/201 (21%)
Query: 5 RADGRNPNQLRPLACSCSIL-HRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWV 63
R DGR N+LR S + H A GS+ QG
Sbjct: 15 RLDGRRWNELRRFESSINTHPHAADGSSYMEQG--------------------------- 47
Query: 64 GSGDTKVLAAVYGPKAGTKKNE-NPEKASIEV---IWK----PRTGQIGKPEK---EYEI 112
+ K++ V GPK K++ + KA + V I K R+ K E+ E +
Sbjct: 48 ---NNKIITLVKGPKEPRLKSQMDTSKALLNVSVNITKFSKFERSKSSHKNERRVLEIQT 104
Query: 113 ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAIC 172
L R + +L I P T + I V+ DG ++ IN AL+DAGI M I
Sbjct: 105 SLVRMFEKNVMLNIYPRTVIDIEIHVLEQDGGIMGSLINGITLALIDAGISMFDYISGIS 164
Query: 173 CCSAESGYCILDPTKLEEQKM 193
++ +LD LEE M
Sbjct: 165 VGLYDT-TPLLDTNSLEENAM 184
>gi|71665831|ref|XP_819881.1| ribosomal RNA processing protein 41A [Trypanosoma cruzi strain CL
Brener]
gi|70885202|gb|EAN98030.1| ribosomal RNA processing protein 41A, putative [Trypanosoma cruzi]
Length = 252
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 10/124 (8%)
Query: 57 CYFCYWVGSGDTKVLAAVYGPKAGTKKNENPEKASI---EVIWKPRTGQI-------GKP 106
C C V SG V A+VYGP+ T + E+ I EV G+ K
Sbjct: 36 CDGCCTVMSGLATVCASVYGPREVTNRLESKYNECIITCEVAIAAFAGEKRRAPQRRSKL 95
Query: 107 EKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKH 166
+E + +S+ +L+ PN+ + ++V+ DG+ INAAC ALVDA + M+
Sbjct: 96 SEEMSAAVLEVARSVVLLSQYPNSQIHICVEVLRQDGSDKAACINAACLALVDACVAMRD 155
Query: 167 LAVA 170
+ A
Sbjct: 156 IVYA 159
>gi|380027897|ref|XP_003697651.1| PREDICTED: exosome complex component MTR3-like [Apis florea]
Length = 273
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 81/194 (41%), Gaps = 39/194 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R D R +++R + I+ +A GSA ++
Sbjct: 37 RNDKRANSEMRKIFLKTGIVSQAKGSA------------------------------YIE 66
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASI--EVIWKP------RTGQIGKPEKEYEIILKR 116
G+TKV+ +V+ P+ + +N + I E + P + Q EK+Y +IL+R
Sbjct: 67 LGNTKVVCSVFDPRELSNRNGYCTQGEIYCEFKFAPFSCQKRKIHQQDAEEKQYSLILQR 126
Query: 117 TLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSA 176
L+ L PN V V+ + G+ L AI AA AL +AG+PM L A
Sbjct: 127 ALEPAVCLHEFPNFQVDVYAMVLDNAGSSLAAAIMAASTALANAGVPMFGLVTA-STIGI 185
Query: 177 ESGYCILDPTKLEE 190
Y ++DPT EE
Sbjct: 186 YDNYYLMDPTDTEE 199
>gi|171694984|ref|XP_001912416.1| hypothetical protein [Podospora anserina S mat+]
gi|170947734|emb|CAP59897.1| unnamed protein product [Podospora anserina S mat+]
Length = 262
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 55/111 (49%), Gaps = 15/111 (13%)
Query: 70 VLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPN 129
V A+V GP +++E+P +A ++VI +P G G E+ E IL+ +L I ++ P
Sbjct: 39 VTASVNGPIEAQRRDEHPYEAHVDVIVRPAAGVGGTRERHLESILQSSLSQIILVKNFPR 98
Query: 130 TTTSVIIQVVHD---------------DGALLPCAINAACAALVDAGIPMK 165
+ +++QV + +++P A AL+ AG+P++
Sbjct: 99 SLIQIVLQVEDSPENDYVNTKLVQASLNFSIMPALFQTAVLALLSAGVPIR 149
>gi|425769344|gb|EKV07839.1| Exosome complex component ski6 [Penicillium digitatum Pd1]
gi|425771116|gb|EKV09570.1| Exosome complex component ski6 [Penicillium digitatum PHI26]
Length = 508
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 97 KPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAA 156
K R G + L+ QS + P++T S+ + V+ DG+LL AINA A
Sbjct: 92 KRRAGGSDRQSSRIATTLRSAFQSHLHTYLYPHSTISIHVSVLSADGSLLAAAINACTLA 151
Query: 157 LVDAGIPMKHLAVAICCCSA 176
LVDAGIPM L +C C+A
Sbjct: 152 LVDAGIPMPGL---LCGCTA 168
>gi|398366099|ref|NP_011711.3| Ski6p [Saccharomyces cerevisiae S288c]
gi|1176073|sp|P46948.1|RRP41_YEAST RecName: Full=Exosome complex component SKI6; AltName:
Full=Extracellular mutant protein 20; AltName:
Full=Ribosomal RNA-processing protein 41; AltName:
Full=Superkiller protein 6
gi|791127|emb|CAA58018.1| G7587 [Saccharomyces cerevisiae]
gi|1323347|emb|CAA97221.1| unnamed protein product [Saccharomyces cerevisiae]
gi|45270908|gb|AAS56835.1| YGR195W [Saccharomyces cerevisiae]
gi|151943471|gb|EDN61782.1| superkiller [Saccharomyces cerevisiae YJM789]
gi|207345003|gb|EDZ71963.1| YGR195Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256271491|gb|EEU06540.1| Ski6p [Saccharomyces cerevisiae JAY291]
gi|259146697|emb|CAY79954.1| Ski6p [Saccharomyces cerevisiae EC1118]
gi|285812388|tpg|DAA08288.1| TPA: Ski6p [Saccharomyces cerevisiae S288c]
gi|323304789|gb|EGA58548.1| Ski6p [Saccharomyces cerevisiae FostersB]
gi|323333367|gb|EGA74763.1| Ski6p [Saccharomyces cerevisiae AWRI796]
gi|323337488|gb|EGA78736.1| Ski6p [Saccharomyces cerevisiae Vin13]
gi|323348458|gb|EGA82703.1| Ski6p [Saccharomyces cerevisiae Lalvin QA23]
gi|323354862|gb|EGA86695.1| Ski6p [Saccharomyces cerevisiae VL3]
gi|349578400|dbj|GAA23566.1| K7_Ski6p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365765457|gb|EHN06965.1| Ski6p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392299448|gb|EIW10542.1| Ski6p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 246
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 78/201 (38%), Gaps = 43/201 (21%)
Query: 5 RADGRNPNQLRPLACSCSIL-HRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWV 63
R DGR N+LR S + H A GS+ QG
Sbjct: 13 RLDGRRWNELRRFESSINTHPHAADGSSYMEQG--------------------------- 45
Query: 64 GSGDTKVLAAVYGPKAGTKKNE-NPEKASIEV---IWK----PRTGQIGKPEK---EYEI 112
+ K++ V GPK K++ + KA + V I K R+ K E+ E +
Sbjct: 46 ---NNKIITLVKGPKEPRLKSQMDTSKALLNVSVNITKFSKFERSKSSHKNERRVLEIQT 102
Query: 113 ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAIC 172
L R + +L I P T + I V+ DG ++ IN AL+DAGI M I
Sbjct: 103 SLVRMFEKNVMLNIYPRTVIDIEIHVLEQDGGIMGSLINGITLALIDAGISMFDYISGIS 162
Query: 173 CCSAESGYCILDPTKLEEQKM 193
++ +LD LEE M
Sbjct: 163 VGLYDT-TPLLDTNSLEENAM 182
>gi|41615042|ref|NP_963540.1| exosome complex exonuclease Rrp41 [Nanoarchaeum equitans Kin4-M]
gi|40068766|gb|AAR39101.1| NEQ248 [Nanoarchaeum equitans Kin4-M]
Length = 233
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 73/188 (38%), Gaps = 34/188 (18%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR+ N++R ++ +A GSA +C
Sbjct: 2 RFDGRDYNEIRDTEMKIGVISKADGSA---------------------------YCR--- 31
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEI--ILKRTLQSIC 122
+G+T +AAVY + N + + R G +G +E E+ I+ + L+
Sbjct: 32 TGNTIAIAAVYLKPGREQSNLKVSYRMLPFAGEERKG-LGLTRREIELSYIIAKALEPAI 90
Query: 123 ILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCI 182
I P T ++++ D AINA AL AGIPMK L AI +
Sbjct: 91 IFEEIPYLTIEASVEIIKADAGTRVAAINALSLALAHAGIPMKALVGAIAVGKVGEK-IV 149
Query: 183 LDPTKLEE 190
LD K EE
Sbjct: 150 LDLNKQEE 157
>gi|220931634|ref|YP_002508542.1| Polyribonucleotide nucleotidyltransferase [Halothermothrix orenii H
168]
gi|254782723|sp|B8CW78.1|PNP_HALOH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|219992944|gb|ACL69547.1| Polyribonucleotide nucleotidyltransferase [Halothermothrix orenii H
168]
Length = 705
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 76/181 (41%), Gaps = 19/181 (10%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P+++RP+ C L R HGS +++G QT L TS + +G
Sbjct: 321 RPDGRKPDEIRPIWCEVGTLPRVHGSGVFTRG----QTQALSVVTLGA-TSDEQILFGLG 375
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICIL 124
+TK Y + +P + P +IG + + +R LQ +
Sbjct: 376 EEETKRYMHHYNFPPYSVGETSP-------LRSPGRREIG-----HGALGERALQPVIPD 423
Query: 125 TINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKH--LAVAICCCSAESGYCI 182
T V+ +V+ +G+ +I + AL+DAG+P+K +A+ + I
Sbjct: 424 QEEFPYTIRVVSEVLESNGSTSQASICGSTLALMDAGVPIKEPVAGIAMGLLKEDEKVVI 483
Query: 183 L 183
L
Sbjct: 484 L 484
>gi|190406796|gb|EDV10063.1| exosome complex exonuclease RRP41 [Saccharomyces cerevisiae
RM11-1a]
Length = 246
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 78/201 (38%), Gaps = 43/201 (21%)
Query: 5 RADGRNPNQLRPLACSCSIL-HRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWV 63
R DGR N+LR S + H A GS+ QG
Sbjct: 13 RLDGRRWNELRRFESSINTHPHAADGSSYMEQG--------------------------- 45
Query: 64 GSGDTKVLAAVYGPKAGTKKNE-NPEKASIEV---IWK----PRTGQIGKPEK---EYEI 112
+ K++ V GPK K++ + KA + V I K R+ K E+ E +
Sbjct: 46 ---NNKIITLVKGPKEPRLKSQMDTSKALLNVSVNITKFSKFERSKSSHKNERRVLEIQT 102
Query: 113 ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAIC 172
L R + +L I P T + I V+ DG ++ IN AL+DAGI M I
Sbjct: 103 SLVRMFEKNVMLNIYPRTVIDIEIHVLEQDGGIMGSLINGITLALIDAGISMFDYISGIS 162
Query: 173 CCSAESGYCILDPTKLEEQKM 193
++ +LD LEE M
Sbjct: 163 VGLYDT-TPLLDTNSLEENAM 182
>gi|430811741|emb|CCJ30798.1| unnamed protein product [Pneumocystis jirovecii]
gi|430813124|emb|CCJ29503.1| unnamed protein product [Pneumocystis jirovecii]
Length = 223
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 68/134 (50%), Gaps = 8/134 (5%)
Query: 61 YWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQS 120
+ G K+L AV GP ++E +A+I+VI +P + + E I+ +T+
Sbjct: 25 FLTKIGPNKILCAVIGPSETKTRDEVIGEATIDVIVRPDVRGSSTKDIQMEQIIWKTISP 84
Query: 121 ICILTINPNTTTSVIIQVVHDDG-----ALLPCAINAACAALVDAGIPMKHL--AVAICC 173
+ + T+ P+T ++IQ++ + +LL +N +L+D+G+ M + AV++
Sbjct: 85 MIMRTMYPHTLIQMVIQIISREKSENIVSLLAAILNTTFISLLDSGVAMTNTFSAVSLAV 144
Query: 174 CSAE-SGYCILDPT 186
S E IL+P+
Sbjct: 145 LSKEGETSIILNPS 158
>gi|307104174|gb|EFN52429.1| hypothetical protein CHLNCDRAFT_12102, partial [Chlorella
variabilis]
Length = 241
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 82/196 (41%), Gaps = 41/196 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P +LR L +L A GSA + G
Sbjct: 9 RLDGRRPKELRQLRAELGVLSSADGSALFEMG---------------------------- 40
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASI----EVIWKPRTGQIGKPEK------EYEIIL 114
+T+VLAAV+GPK ++++ E+ +I + TG+ + K E + +
Sbjct: 41 --NTRVLAAVFGPKPVEQRSQEDERRAIVKCEYAMASFSTGERRRRGKADRRATEIGMAI 98
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
+ T++ + + P + + +QV+ DG INAAC A A IPM+ L VA C
Sbjct: 99 RNTMEQTILTELLPRSQIDIYVQVLQADGGTRCACINAACMAAAAAAIPMRDL-VASCAA 157
Query: 175 SAESGYCILDPTKLEE 190
+LD +E+
Sbjct: 158 GYLESTALLDLNYMED 173
>gi|307178493|gb|EFN67182.1| Exosome complex exonuclease MTR3 [Camponotus floridanus]
Length = 282
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 106/266 (39%), Gaps = 47/266 (17%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR+ N+LR + I+ +A GSA ++
Sbjct: 37 RHDGRSNNELRNIFLKTGIISQAKGSA------------------------------YIE 66
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASI--EVIWKP------RTGQIGKPEKEYEIILKR 116
G+TK++ +V+ P+ K + + E + P + Q EKEY +IL+R
Sbjct: 67 MGNTKIICSVFDPREVPNKTGYCVQGELFCEFKFAPFSHHKRKMHQQDAEEKEYSLILQR 126
Query: 117 TLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSA 176
L+ L PN V V+ + G+ L AI AA AL +AG+PM L A
Sbjct: 127 ALEPAVCLQEFPNFQVDVYATVLDNGGSALAAAIMAASLALANAGVPMFGLVTASTVGIY 186
Query: 177 ESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSV-THGAMS 235
+ Y ++DPT EE S+ + ++Q +HG I+ + G++
Sbjct: 187 DHTY-LVDPTDTEET-------FCCTKSVPGTVHNHGIIIQAALPQHGQISEMFVVGSVD 238
Query: 236 VDDYFHCLERGRAASAKLSDFLRRSL 261
D H ++ A + L + L
Sbjct: 239 TDTIVHSMDLISEAHKDICPLLEQCL 264
>gi|307200434|gb|EFN80643.1| Exosome complex exonuclease MTR3 [Harpegnathos saltator]
Length = 215
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 90/205 (43%), Gaps = 17/205 (8%)
Query: 66 GDTKVLAAVYGPKAGTKKNENPEKASI--EVIWKP------RTGQIGKPEKEYEIILKRT 117
G+TKV+ +V+ P+ K + + E + P + Q EKEY ++L+R
Sbjct: 2 GNTKVICSVFDPREVPNKTGYCVQGELYCEFKFAPFSYRKRKMHQQDAEEKEYSLVLQRA 61
Query: 118 LQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAE 177
L+ L+ PN + V+ + G+ L AI AA AL DAG+PM L A +
Sbjct: 62 LEPAVCLSEFPNFQVDIYATVLDNGGSALAAAIMAASLALADAGVPMYSLVTASTIGVYD 121
Query: 178 SGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSV-THGAMSV 236
+ Y ++DPT EE ++L P+ +VQ +H I+ + G+ +
Sbjct: 122 NTY-LVDPTDEEES-------FCCSKTVLDANPDHGIIVQAILSQHNQISEMFVVGSFNT 173
Query: 237 DDYFHCLERGRAASAKLSDFLRRSL 261
D H ++ A + L + L
Sbjct: 174 DTIIHSMDLLSTAHKDICPLLEKCL 198
>gi|268570481|ref|XP_002640755.1| C. briggsae CBR-ARX-4 protein [Caenorhabditis briggsae]
Length = 539
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/204 (21%), Positives = 72/204 (35%), Gaps = 35/204 (17%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFC 60
M+ + + R+ RPL+ C + GS
Sbjct: 23 MDTEEVEQRSSTAFRPLSVKCGVFGAQDGSG----------------------------- 53
Query: 61 YWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQS 120
+ G+T+VLA + GP K E+ K + + + E+ L + +
Sbjct: 54 -YAEFGNTRVLAQILGPDGDGKWEEDHAKVVVTLKGVENETSVA----EWRAELTSSASA 108
Query: 121 ICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGY 180
+ + P + I V+ DDG +L AI A AL +GI L ++ +G
Sbjct: 109 VIFVNKYPGKVIEIEITVLSDDGGVLSTAITAMALALAHSGIEHMGLTASVHVAMRPNGD 168
Query: 181 CILDPTKLEEQKMKGFAYLVF-PN 203
I DP+ E + G F PN
Sbjct: 169 YITDPSTSESSGILGGVTFAFVPN 192
>gi|388854473|emb|CCF51860.1| uncharacterized protein [Ustilago hordei]
Length = 328
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 77/201 (38%), Gaps = 66/201 (32%)
Query: 10 NPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTK 69
+P LRPL+ L RA SAS+S G
Sbjct: 18 SPTALRPLSAQLGTLARADASASFS------------------------------FGPLN 47
Query: 70 VLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPN 129
V+A+V GP ++E ++A+++VI++P+ G G + L S+ +L P
Sbjct: 48 VVASVSGPTEVRIRDELTDRATLDVIFQPQHGVAGIASQAVSDSLFTAFSSVLLLHHYPR 107
Query: 130 TTTSVIIQ-------------VVHDDG----------------------ALLPCAINAAC 154
+ V++Q VVH D + L INAA
Sbjct: 108 SLIQVVLQTLSCPTLPQTSAQVVHSDVQASQRVVARQPLLLGPDKPPSVSELAALINAAS 167
Query: 155 AALVDAGIPMKHLAVAICCCS 175
AL+DAGIP + +VA C C+
Sbjct: 168 LALLDAGIPARG-SVAACACA 187
>gi|392561650|gb|EIW54831.1| hypothetical protein TRAVEDRAFT_130863 [Trametes versicolor
FP-101664 SS1]
Length = 262
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 64/154 (41%), Gaps = 18/154 (11%)
Query: 64 GSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICI 123
G G T L++V GP ENP +A++++ +P G K LK
Sbjct: 21 GFGSTLSLSSVSGPIEVRPTLENPSQATLDIQIRPLAAIAGTDSKALATTLKSIFSPALH 80
Query: 124 LTINPNTTTSVIIQVVHD--------------DGALLPCAINAACAALVDAG-IPMKHLA 168
L +P T ++ Q + + L +NA AALV+AG +PM +
Sbjct: 81 LAHHPRTLVQIVGQALCGTQSGSGLGSAGRGWNAGLTASLVNATTAALVNAGSVPMMGVV 140
Query: 169 VAICCCSAESGYCILDPTKLEEQKMKG---FAYL 199
A+ G +LDP + E ++ G FA+L
Sbjct: 141 CAVAVGRLPDGTLVLDPEETELSRLAGSGCFAFL 174
>gi|19074636|ref|NP_586142.1| BELONGS TO THE RNASE PH (EXOSOME) FAMILY [Encephalitozoon cuniculi
GB-M1]
gi|19069278|emb|CAD25746.1| BELONGS TO THE RNASE PH (EXOSOME) FAMILY [Encephalitozoon cuniculi
GB-M1]
gi|449330231|gb|AGE96492.1| rnase like protein [Encephalitozoon cuniculi]
Length = 188
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 66 GDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKP-EKEYEIILKRTLQSICIL 124
+T V V+GP + E+P++A ++V W+ G+ +K + ++++ L IL
Sbjct: 23 NNTTVFCVVHGPSDAISRQEDPDRAILDVRWRDMVLINGRVYDKYFSRVIEKILSKNIIL 82
Query: 125 TINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILD 184
++ + VV + L CA+NAA AL D GIP++ + A E + D
Sbjct: 83 ELDACKVIQISFNVVGETRNTLFCAVNAALLALADGGIPLRSMFYASSSFMHEEEVVVFD 142
>gi|266618485|pdb|2WP8|B Chain B, Yeast Rrp44 Nuclease
Length = 246
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 78/201 (38%), Gaps = 43/201 (21%)
Query: 5 RADGRNPNQLRPLACSCSIL-HRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWV 63
R DGR N+LR S + H A GS+ QG
Sbjct: 13 RLDGRRWNELRRFESSINTHPHAADGSSYMEQG--------------------------- 45
Query: 64 GSGDTKVLAAVYGPKAGTKKNE-NPEKASIEV---IWK----PRTGQIGKPEK---EYEI 112
+ K++ V GPK K++ + KA + V I K R+ K E+ E +
Sbjct: 46 ---NNKIITLVKGPKEPRLKSQMDTSKALLNVSVNINKFSKFERSKSSHKNERRVLEIQT 102
Query: 113 ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAIC 172
L R + +L I P T + I V+ DG ++ IN AL+DAGI M I
Sbjct: 103 SLVRMFEKNVMLNIYPRTVIDIEIHVLEQDGGIMGSLINGITLALIDAGISMFDYISGIS 162
Query: 173 CCSAESGYCILDPTKLEEQKM 193
++ +LD LEE M
Sbjct: 163 VGLYDT-TPLLDTNSLEENAM 182
>gi|414160588|ref|ZP_11416854.1| polyribonucleotide nucleotidyltransferase [Staphylococcus simulans
ACS-120-V-Sch1]
gi|410878108|gb|EKS25997.1| polyribonucleotide nucleotidyltransferase [Staphylococcus simulans
ACS-120-V-Sch1]
Length = 701
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 77/181 (42%), Gaps = 19/181 (10%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P+++RPL +L RAHGS +++G QT L S+ +G
Sbjct: 319 RPDGRKPDEIRPLESEVGLLPRAHGSGLFTRG----QTQALSVLTLGAL-SEYQLIDGLG 373
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICIL 124
K Y + P +A G+ E + + +R L+ I
Sbjct: 374 PEVEKRFMHHYNFPNFSVGETGPVRAP------------GRREIGHGALGERALKYIIPD 421
Query: 125 TINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKH--LAVAICCCSAESGYCI 182
T + T ++ +V+ +G+ +I + AL+DAG+P+K +A+ + + Y I
Sbjct: 422 TQDFPYTVRIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRDDNYTI 481
Query: 183 L 183
L
Sbjct: 482 L 482
>gi|342879541|gb|EGU80786.1| hypothetical protein FOXB_08653 [Fusarium oxysporum Fo5176]
Length = 250
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 68/153 (44%), Gaps = 17/153 (11%)
Query: 66 GDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILT 125
G V+AAV GP +++EN +A ++VI +P G G E++ E I++ ++ + +
Sbjct: 26 GGYAVIAAVNGPVEAQRRDENAFEALVDVIVRPAAGVGGTRERQLESIMQAAIRQLIPVR 85
Query: 126 INPNTTTSVIIQVVHD---------------DGALLPCAINAACAALVDAGIPMKHLAVA 170
P + +QV + ++P +++A L+ A IP+K + A
Sbjct: 86 DYPRCVIQITLQVAETPENAYVNAKLVQAQLNLPIIPALLHSAILGLLSAAIPLKSIGAA 145
Query: 171 --ICCCSAESGYCILDPTKLEEQKMKGFAYLVF 201
+ E I+DP+ ++ K L F
Sbjct: 146 TLLAIPEEEGKGIIVDPSAVDIDHAKSVHVLGF 178
>gi|365984727|ref|XP_003669196.1| hypothetical protein NDAI_0C02930 [Naumovozyma dairenensis CBS 421]
gi|343767964|emb|CCD23953.1| hypothetical protein NDAI_0C02930 [Naumovozyma dairenensis CBS 421]
Length = 246
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 77/203 (37%), Gaps = 47/203 (23%)
Query: 5 RADGRNPNQLRPLACSCSIL-HRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWV 63
R DGR N+LR S + H + GS+ QG
Sbjct: 13 RLDGRRWNELRRFESSINTHPHASDGSSYLEQG--------------------------- 45
Query: 64 GSGDTKVLAAVYGPKAGTKKNE-NPEKASIEVIWKPRTGQIGKPEK------------EY 110
+ K++ V GPK T +++ + KA + + Q K E+ E
Sbjct: 46 ---NNKIITLVKGPKEPTSRSQVDTNKALLRI--SVNITQFSKFERSKSSHRNERRVLEM 100
Query: 111 EIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVA 170
+ L RT + +L + P T + I V+ DG ++ +N AL+DAGI M
Sbjct: 101 QTALVRTFEKNVMLNLYPRTLIDIEIHVLQQDGGIMGSLLNGITLALIDAGIAMYDYISG 160
Query: 171 ICCCSAESGYCILDPTKLEEQKM 193
I ++ +LD LEE M
Sbjct: 161 ISVGLYDT-TPLLDVNSLEETAM 182
>gi|289523245|ref|ZP_06440099.1| polyribonucleotide nucleotidyltransferase [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
gi|289503788|gb|EFD24952.1| polyribonucleotide nucleotidyltransferase [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
Length = 741
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 87/192 (45%), Gaps = 39/192 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
RADGR ++LRP++C S+L RAHGSA +++G +T L +F
Sbjct: 314 RADGRAMDELRPISCEVSLLPRAHGSAVFTRG----ETQALVVTTLGMFGE--------- 360
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKP-RTGQI------GKPEKEYEIILKRT 117
D ++L G K +E P++ + + P G++ G+ E + + +R
Sbjct: 361 --DEQIL-------DGLKLDEPPKRFMLHYNFPPFSVGEVRPMRGPGRREIGHGALAERA 411
Query: 118 LQSICILTINPNTTTSVIIQVVHD----DGALLPCAINAACAALVDAGIPMKHLAVAICC 173
++ + I + II+VV D +G+ ++ A +L+DAG+P+ I
Sbjct: 412 VKPL----IPDESQFPYIIRVVSDILESNGSSSMASVCGASMSLMDAGVPIAKSVAGIAM 467
Query: 174 CSAESG--YCIL 183
+ G Y IL
Sbjct: 468 GLIKEGDKYAIL 479
>gi|237841089|ref|XP_002369842.1| 3' exoribonuclease, putative [Toxoplasma gondii ME49]
gi|211967506|gb|EEB02702.1| 3' exoribonuclease, putative [Toxoplasma gondii ME49]
gi|221483644|gb|EEE21956.1| 3' exoribonuclease, putative [Toxoplasma gondii GT1]
Length = 303
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 68/145 (46%), Gaps = 15/145 (10%)
Query: 62 WVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWK----PRTGQIGKPEKE---YEIIL 114
+V G TK+ AVYGP+ K + + ++ SI + ++ TG+ E++ +L
Sbjct: 74 FVSVGKTKLNCAVYGPRPNMK-HASQDRGSINLEFRFAPFATTGKDACSERDTAHLTTLL 132
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
+ L ++ L + +T +V + V+ DDG L+ A+ AL DAGI M + C
Sbjct: 133 HQALNAVVRLDLYAKSTIAVSVLVLEDDGGLISAALTCIGLALADAGIEMLDVVTGASAC 192
Query: 175 SAESGY-------CILDPTKLEEQK 192
G+ C+L EE++
Sbjct: 193 VFSVGHPDSPPRTCVLLDPDAEERR 217
>gi|321469683|gb|EFX80662.1| hypothetical protein DAPPUDRAFT_50975 [Daphnia pulex]
Length = 227
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 64/137 (46%), Gaps = 9/137 (6%)
Query: 62 WVGSGDTKVLAAVYGPKAGTKKNENPEKASI--EVIWKPRTGQI--GKPEKEYEIIL--- 114
++ G+TK++ VYGP+ KK++ + E + P + Q G + E++L
Sbjct: 14 YIEQGNTKLVCGVYGPREVQKKSDFSLNGQLFCEFKFAPFSCQKRRGHQQDNEELVLSGL 73
Query: 115 -KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
+ L++ L P V + V+ +DG+ L A+ A AL A IPM L +
Sbjct: 74 LREALEAAVCLHKFPKAQVEVNVMVIENDGSPLAAALTCASLALASASIPMYDLMIGTSV 133
Query: 174 CSAESGYCILDPTKLEE 190
+ +LDPTK EE
Sbjct: 134 RQIPKLF-LLDPTKDEE 149
>gi|406603483|emb|CCH45039.1| Polyribonucleotide nucleotidyltransferase [Wickerhamomyces
ciferrii]
Length = 245
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 83/222 (37%), Gaps = 51/222 (22%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR N+LR C R + + S G +++
Sbjct: 13 RMDGRRWNELRRFDC------RINTHPNSSDGSSYVE----------------------- 43
Query: 65 SGDTKVLAAVYGP----------KAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIIL 114
G++K++ V GP G N N I + + + + +E L
Sbjct: 44 QGNSKIVCIVNGPMEPPTKAQLSTTGATLNLNLNVTPFSSIDRKKRSKNERRIQEIITSL 103
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
KRT + I+ P TT S+ + V+ DG L+ NA AL+DAGI M A+
Sbjct: 104 KRTFEQSIIIDKYPRTTISINVHVLSLDGGLISSITNAITLALIDAGIAMYEYISAVSAG 163
Query: 175 SAESGYCILDPTKLEEQ-----------KMKGFAYLVFPNSI 205
++ +LD LEE+ K + A L+ N I
Sbjct: 164 WYDN-TPLLDLNSLEEKDVSYLTLAVVGKSEKLALLILENKI 204
>gi|401625567|gb|EJS43567.1| ski6p [Saccharomyces arboricola H-6]
Length = 246
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 76/201 (37%), Gaps = 43/201 (21%)
Query: 5 RADGRNPNQLRPLACSCSIL-HRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWV 63
R DGR N+LR S + H A GS+ QG
Sbjct: 13 RLDGRRWNELRRFESSINTHPHAADGSSYLEQG--------------------------- 45
Query: 64 GSGDTKVLAAVYGPKAGTKKNE-NPEKASIEVIWK-------PRTGQIGKPEK---EYEI 112
+ K++ V GPK K++ + KA + V R+ K E+ E +
Sbjct: 46 ---NNKIITLVKGPKEPRLKSQMDTSKALLNVSVNITRFSKFERSKSSHKNERRVLEIQT 102
Query: 113 ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAIC 172
L R + +L I P T + I V+ DG ++ IN AL+DAGI M I
Sbjct: 103 SLVRMFEKNVMLNIYPRTVIDIEIHVLEQDGGIMGTLINGITLALIDAGISMFDYISGIS 162
Query: 173 CCSAESGYCILDPTKLEEQKM 193
++ +LD LEE M
Sbjct: 163 VGLYDT-TPLLDTNSLEENAM 182
>gi|221504332|gb|EEE30007.1| 3' exoribonuclease, putative [Toxoplasma gondii VEG]
Length = 303
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 68/145 (46%), Gaps = 15/145 (10%)
Query: 62 WVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWK----PRTGQIGKPEKE---YEIIL 114
+V G TK+ AVYGP+ K + + ++ SI + ++ TG+ E++ +L
Sbjct: 74 FVSVGKTKLNCAVYGPRPNMK-HASQDRGSINLEFRFAPFATTGKDACSERDTAHLTTLL 132
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
+ L ++ L + +T +V + V+ DDG L+ A+ AL DAGI M + C
Sbjct: 133 HQALNAVVRLDLYAKSTIAVSVLVLEDDGGLISAALTCIGLALADAGIEMLDVVTGASAC 192
Query: 175 SAESGY-------CILDPTKLEEQK 192
G+ C+L EE++
Sbjct: 193 VFSVGHPDSPPRTCVLLDPDAEERR 217
>gi|154346012|ref|XP_001568943.1| putative exosome complex exonuclease rrp41 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134066285|emb|CAM44076.1| putative exosome complex exonuclease rrp41 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|449310620|gb|AGE92537.1| exosome complex exonuclease RRP41 [Leishmania braziliensis]
Length = 246
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 63/136 (46%), Gaps = 13/136 (9%)
Query: 50 LFVFTSKCYFCYWVGSGDTKVLAAVYGPKAGTKKNENPEKASI---EVIWKPRTGQI--- 103
+F S C + G +KV A+++GP+ K E + EV G+
Sbjct: 29 VFGTLSACDGSCDITVGQSKVCASIFGPRESLHKQEAKHDKVLVTCEVAVAAFAGESRRN 88
Query: 104 ----GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVD 159
K ++ + + + +S+ +L+ PN+ + I+V+ DG INAAC ALVD
Sbjct: 89 PQRRSKLSEDIDAAVVQVARSVILLSQYPNSQIHIYIEVLQQDGNEKVACINAACLALVD 148
Query: 160 AGIPMKHLAVAICCCS 175
A + M+ + +CC S
Sbjct: 149 ANVAMRDV---VCCIS 161
>gi|358332153|dbj|GAA50858.1| exosome complex component RRP41 [Clonorchis sinensis]
Length = 477
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 12/117 (10%)
Query: 66 GDTKVLAAVYGPKA-GTKKNENPEKASIEVIWK--PRTGQIGKPEK---------EYEII 113
G+TKV+A+V GP+ K + P++A++ + P + G+ K ++
Sbjct: 261 GNTKVMASVVGPRPCRFKGDMKPDEATLVCKYNKPPFSSTSGERRKVSNRDRSTSDFAAT 320
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVA 170
++ + P + + ++V+ DG+ CA+NAA AL DAGI M+ LA A
Sbjct: 321 IEEIFSCVVRKEKYPMSQIDIFLEVLQSDGSEFACAVNAATLALTDAGIEMRSLACA 377
>gi|164428624|ref|XP_964355.2| hypothetical protein NCU00812 [Neurospora crassa OR74A]
gi|157072219|gb|EAA35119.2| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 257
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 43/85 (50%), Gaps = 9/85 (10%)
Query: 128 PNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYC------ 181
P++T ++ + V+ DG+LL INAA A VDAGIPM VA C + S Y
Sbjct: 110 PHSTINISLHVLSQDGSLLAALINAATLACVDAGIPMTDY-VAACTAGSTSTYAANDEGA 168
Query: 182 --ILDPTKLEEQKMKGFAYLVFPNS 204
+LD EEQ++ G +S
Sbjct: 169 DPLLDMNHQEEQELPGLTVATLGDS 193
>gi|449310644|gb|AGE92549.1| exosome complex exonuclease RRP41 [Leishmania braziliensis]
Length = 246
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 65/136 (47%), Gaps = 13/136 (9%)
Query: 50 LFVFTSKCYFCYWVGSGDTKVLAAVYGPKAGTKKNENPEKASI---EVIWKPRTGQIGK- 105
+F S C + G +KV A+++GP+ K E + EV G+ +
Sbjct: 29 VFGTLSACDGSCDITVGQSKVCASIFGPRESLHKQEAKHDKVLVTCEVAVAAFAGESRRN 88
Query: 106 PEK------EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVD 159
P++ + + + + +S+ +L+ PN+ + I+V+ DG INAAC ALVD
Sbjct: 89 PQRRSRLSEDIDAAVVQVARSVILLSQYPNSQIHIYIEVLQQDGNEKVACINAACLALVD 148
Query: 160 AGIPMKHLAVAICCCS 175
A + M+ + +CC S
Sbjct: 149 ANVAMRDV---VCCIS 161
>gi|319892292|ref|YP_004149167.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
pseudintermedius HKU10-03]
gi|317161988|gb|ADV05531.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus
pseudintermedius HKU10-03]
Length = 697
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 77/181 (42%), Gaps = 19/181 (10%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P+++RPL+ +L RAHGS +++G QT L S+ +G
Sbjct: 319 RPDGRKPDEIRPLSSEVGLLPRAHGSGLFTRG----QTQALSVLTLGSI-SEYQIIDGLG 373
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICIL 124
+ K Y + P +A G+ E + + +R L+ I
Sbjct: 374 EEEHKRFMHHYNFPNFSVGETGPVRAP------------GRREIGHGALGERALRYIIPD 421
Query: 125 TINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKH--LAVAICCCSAESGYCI 182
T ++ +V+ +G+ +I + AL+DAG+P+K +A+ + E Y I
Sbjct: 422 EKTFPYTVRIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREESYTI 481
Query: 183 L 183
L
Sbjct: 482 L 482
>gi|50556492|ref|XP_505654.1| YALI0F20240p [Yarrowia lipolytica]
gi|49651524|emb|CAG78463.1| YALI0F20240p [Yarrowia lipolytica CLIB122]
Length = 216
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 65/172 (37%), Gaps = 38/172 (22%)
Query: 22 SILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLAAVYGPKAGT 81
+IL+ GSA W QG T V+ +V GP
Sbjct: 2 NILNNVDGSAKWEQG-------------------------------TSVICSVTGPIETR 30
Query: 82 KKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHD 141
++ + P A +E++ +P GQ E + + L + + + P ++IQ++
Sbjct: 31 RRTDEPTLAQVELVIRPAIGQATTRETLIKDRIYSVLAATVVRNLYPRMLLQIVIQILEQ 90
Query: 142 DGAL------LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTK 187
L +NA C AL+D+ PM L A+ + IL PT+
Sbjct: 91 GEGTGYNVLKLAACLNAVCLALIDSRTPMTGLFTAVAIAIVDDKL-ILHPTR 141
>gi|386319440|ref|YP_006015603.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
pseudintermedius ED99]
gi|323464611|gb|ADX76764.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
pseudintermedius ED99]
Length = 697
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 77/181 (42%), Gaps = 19/181 (10%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P+++RPL+ +L RAHGS +++G QT L S+ +G
Sbjct: 319 RPDGRKPDEIRPLSSEVGLLPRAHGSGLFTRG----QTQALSVLTLGSI-SEYQIIDGLG 373
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICIL 124
+ K Y + P +A G+ E + + +R L+ I
Sbjct: 374 EEEHKRFMHHYNFPNFSVGETGPVRAP------------GRREIGHGALGERALKYIIPD 421
Query: 125 TINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKH--LAVAICCCSAESGYCI 182
T ++ +V+ +G+ +I + AL+DAG+P+K +A+ + E Y I
Sbjct: 422 EKTFPYTVRIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREESYTI 481
Query: 183 L 183
L
Sbjct: 482 L 482
>gi|358386690|gb|EHK24285.1| hypothetical protein TRIVIDRAFT_31322 [Trichoderma virens Gv29-8]
Length = 275
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 85/218 (38%), Gaps = 60/218 (27%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR N LR L A GS+ ++
Sbjct: 14 RIDGRRWNDLRRLHAQIHTQDAADGSS------------------------------YLE 43
Query: 65 SGDTKVLAAVYG---PKAGTKKNE------------------NPEKASIEVIWKPRTGQI 103
G TKV+ V G P+AG +K N A + + R G+
Sbjct: 44 MGHTKVMCVVTGPAEPQAGQQKRGTGGGGQAGGQKDGASIVVNVVVAGFSSVDRKRRGRN 103
Query: 104 GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIP 163
+ +E EI +++ L + + + P++T +V + V+ DG+LL INA AL+DAGIP
Sbjct: 104 DRRIQEMEITIQKALAANLHVHLFPHSTITVSLHVLSQDGSLLAALINATTLALIDAGIP 163
Query: 164 MKHLAVAICCCSAESGYC--------ILDPTKLEEQKM 193
M A C + S Y +LD EEQ++
Sbjct: 164 MTDYITA-CTAGSTSSYAAGDDSADPLLDLNTQEEQEL 200
>gi|115470767|ref|NP_001058982.1| Os07g0168000 [Oryza sativa Japonica Group]
gi|75118006|sp|Q69LE7.1|PNP1_ORYSJ RecName: Full=Probable polyribonucleotide nucleotidyltransferase 1,
chloroplastic; AltName: Full=Polynucleotide
phosphorylase 1; Short=PNPase 1; Flags: Precursor
gi|50509724|dbj|BAD31776.1| putative polynucleotide phosphorylase [Oryza sativa Japonica Group]
gi|113610518|dbj|BAF20896.1| Os07g0168000 [Oryza sativa Japonica Group]
Length = 902
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 73/171 (42%), Gaps = 22/171 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R+DGR+P +LRP+ C +L RAHGSA +++G +T L + V
Sbjct: 448 RSDGRSPCELRPINSQCGLLPRAHGSALFTRG----ETQALAVVTLGDYQMAQRIDNLVD 503
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKE---YEIILKRTLQSI 121
+ ++K Y P + EV G+IG P + + ++ +R L+ I
Sbjct: 504 TEESKSFYLQY---------TFPPSSVGEV------GRIGAPNRREIGHGMLAERALEPI 548
Query: 122 CILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAIC 172
+ T V + +G+ ++ C AL DAG+P+K I
Sbjct: 549 LPPEEDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKFPVAGIA 599
>gi|357111469|ref|XP_003557535.1| PREDICTED: polyribonucleotide nucleotidyltransferase-like
[Brachypodium distachyon]
Length = 900
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 72/168 (42%), Gaps = 16/168 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R+DGR+P +LRP+ C +L RAHGSA +++G +T L + V
Sbjct: 446 RSDGRSPCELRPINSQCGLLPRAHGSALFTRG----ETQALAVVTLGDYQMAQRIDTLVD 501
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICIL 124
+ ++K Y P + EV RTG + E + ++ +R L+ I
Sbjct: 502 TEESKSFYLQYA---------FPPSSVGEV---GRTGAPNRREIGHGMLAERALEPILPS 549
Query: 125 TINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAIC 172
+ T V + +G+ ++ C AL DAG+P+K I
Sbjct: 550 EGDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKFPVAGIA 597
>gi|206972738|ref|ZP_03233672.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1134]
gi|206732338|gb|EDZ49526.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1134]
Length = 712
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 79/182 (43%), Gaps = 21/182 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +++RPLA IL R HGS +++G T C
Sbjct: 316 RPDGRKGDEIRPLASEVGILSRTHGSGLFTRG----------------QTQALSICTLGA 359
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEV-IWKPRTGQIGKPEKEYEIILKRTLQSICI 123
GD ++L + G + + + S V +P GQ G+ E + + +R L+ +
Sbjct: 360 LGDVQILDGL-GVEESKRFMHHYNFPSFSVGETRPMRGQ-GRREIGHGALGERALEPVIP 417
Query: 124 LTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESG--YC 181
+ T ++ +V+ +G+ +I + A++DAG+P+K I ++G Y
Sbjct: 418 SEKDFPYTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHYT 477
Query: 182 IL 183
IL
Sbjct: 478 IL 479
>gi|425736869|ref|ZP_18855145.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus
massiliensis S46]
gi|425483341|gb|EKU50493.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus
massiliensis S46]
Length = 698
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 82/184 (44%), Gaps = 25/184 (13%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P+++RPL+ +L RAHGS +++G QT L V T Y +
Sbjct: 319 RPDGRKPDEIRPLSSETGLLPRAHGSGLFTRG----QTQA-----LSVLTLGALGDYQLI 369
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQI---GKPEKEYEIILKRTLQSI 121
G GP+ + + + V TG + G+ E + + +R L+ I
Sbjct: 370 DG--------LGPEEHKRFMHHYNFPNFSV---GETGPVRAPGRREIGHGALGERALRHI 418
Query: 122 CILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKH--LAVAICCCSAESG 179
+ T ++ +V+ +G+ +I + AL+DAG+P+K +A+ + E
Sbjct: 419 IPDEKDFPYTVRIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDS 478
Query: 180 YCIL 183
Y IL
Sbjct: 479 YTIL 482
>gi|406862492|gb|EKD15542.1| exosome complex subunit Rrp46 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 247
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 96/233 (41%), Gaps = 52/233 (22%)
Query: 70 VLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPN 129
V+ AV GP +++E PE+A+I+V+ +P G E+ E IL+ TL+ I ++ P
Sbjct: 30 VIGAVNGPLEIQRRDELPEEAAIDVLVRPAAGVGSTRERHLESILQSTLRHIVLIHNFPR 89
Query: 130 TTTSVIIQVV---HDDGA------------LLPCAINAACAALVDAGIPMKHLAVAICCC 174
+ + +Q+ D A +LP + A AL+ A +P+ ++
Sbjct: 90 SLIQITLQITSTPESDSAGSKLVQASSNLPILPALLQTATLALLSASMPLSMTLTSVYLA 149
Query: 175 SAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAM 234
+ G I +PT L+ Q N +L+ G LV + + G+
Sbjct: 150 LSPEG-IISNPTPLQSQSASS-------NHVLAFTSNGDLLV-----------AESEGSF 190
Query: 235 SVDDYFHCLERGRA------------------ASAKLSDFLRRSLQSKLPGDL 269
++ D+ E G+A LS FL+ +L+ K+ DL
Sbjct: 191 TLKDWEGVYEAGKAICCDNSGAHGDYAMGDDEKDVSLSVFLKSTLEEKIKTDL 243
>gi|390595539|gb|EIN04944.1| hypothetical protein PUNSTDRAFT_116225 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 261
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 68/152 (44%), Gaps = 11/152 (7%)
Query: 63 VGSGDTKVLAAVYGPKAGTKKNE---NPEKASIEVIWKPRTGQIGKPEK-------EYEI 112
V G T+V +V+GP+ +++ + ++EV P + + E+
Sbjct: 42 VSHGLTEVSVSVFGPREARLRSQTIHDRANINVEVNIAPFSTGDRRRRNRGDKRILEFGA 101
Query: 113 ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAIC 172
+K T + + ++ P + + + V+ DG +L INA AL+DAGIP+ + A+
Sbjct: 102 TIKSTFEPVIQTSLYPRSQIDIHVLVLQQDGGVLQACINATTLALIDAGIPLLDILCAV- 160
Query: 173 CCSAESGYCILDPTKLEEQKMKGFAYLVFPNS 204
S +LD T LEE + + P +
Sbjct: 161 TGGVHSTSPLLDLTNLEENDVPHITVAIMPRT 192
>gi|302696003|ref|XP_003037680.1| hypothetical protein SCHCODRAFT_35111 [Schizophyllum commune H4-8]
gi|300111377|gb|EFJ02778.1| hypothetical protein SCHCODRAFT_35111, partial [Schizophyllum
commune H4-8]
Length = 206
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 64/146 (43%), Gaps = 12/146 (8%)
Query: 66 GDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILT 125
GDT LA+V GP E P +A+ EV +P + K ++ L L
Sbjct: 22 GDTTALASVSGPIEVRLAAEQPARATFEVNMRPISNVPATEAKSIAASVRAALSPSIFLQ 81
Query: 126 INPNTTTSVIIQVV-----HDDGALLPCAINAACAALVDAG-IPMKHLAVAICCC---SA 176
P T +++Q + D +LL INA AL++AG M+ + A+ S
Sbjct: 82 QYPRTLIQLMLQALSPARAKSDDSLLAAMINAGSLALLNAGSAAMRGVVCAVPVARIPSG 141
Query: 177 ESGYCILDPTKLEEQKMKG---FAYL 199
+S ++DP E + +G FA+L
Sbjct: 142 DSTILVVDPDTDELSRARGTGCFAFL 167
>gi|418635150|ref|ZP_13197535.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
lugdunensis VCU139]
gi|374842162|gb|EHS05608.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
lugdunensis VCU139]
Length = 698
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 80/184 (43%), Gaps = 25/184 (13%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P+++RPL IL RAHGS +++G QT L V T Y +
Sbjct: 319 RPDGRKPDEIRPLESEVGILPRAHGSGLFTRG----QTQ-----ALSVLTLGALGDYQII 369
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQI---GKPEKEYEIILKRTLQSI 121
G GP+ + + + V TG + G+ E + + + L+ I
Sbjct: 370 DG--------LGPEQEKRFMHHYNFPNFSV---GETGPVRAPGRREIGHGALGEHALRHI 418
Query: 122 CILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKH--LAVAICCCSAESG 179
T T ++ +V+ +G+ +I + AL+DAG+P+K +A+ + E
Sbjct: 419 IPDTSKFPYTIRIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDS 478
Query: 180 YCIL 183
Y IL
Sbjct: 479 YTIL 482
>gi|342319558|gb|EGU11506.1| Hypothetical Protein RTG_02676 [Rhodotorula glutinis ATCC 204091]
Length = 346
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 12/92 (13%)
Query: 96 WKPRTGQIGKPEK------------EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 143
W R GQ G E E +K T + + +L + P ++ + +Q++ +DG
Sbjct: 118 WGERVGQGGSSEGGLRRGGKDRRTIELAAAVKNTFEPVLLLHLYPRSSIDIYLQILENDG 177
Query: 144 ALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
++L AINA AL+ AG+P+ ++ S
Sbjct: 178 SVLQAAINATSLALISAGLPLSDYVCSLSLAS 209
>gi|302667165|ref|XP_003025173.1| hypothetical protein TRV_00655 [Trichophyton verrucosum HKI 0517]
gi|291189263|gb|EFE44562.1| hypothetical protein TRV_00655 [Trichophyton verrucosum HKI 0517]
Length = 302
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 60/131 (45%), Gaps = 21/131 (16%)
Query: 62 WVGSGDTKVLAAVYGPKAGTKKNENPEKAS--IEVIW------------KPRTGQIG--- 104
++ G+T VL V+GP G K++E A I V+ K TG G
Sbjct: 42 YLSMGNTAVLCTVHGPAEG-KRSETAGAAGAVINVVVNLAGFANVDRKKKSATGSGGGDR 100
Query: 105 KPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPM 164
+ E +L+ Q + P +T SV + V+ DG+L +NA ALVDAGIPM
Sbjct: 101 QATTELATLLRDAFQPHIHAHLYPRSTISVHVSVLSSDGSLFAACLNACTLALVDAGIPM 160
Query: 165 KHLAVAICCCS 175
L +C C+
Sbjct: 161 PGL---LCACT 168
>gi|125557368|gb|EAZ02904.1| hypothetical protein OsI_25038 [Oryza sativa Indica Group]
Length = 865
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 73/171 (42%), Gaps = 22/171 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R+DGR+P +LRP+ C +L RAHGSA +++G +T L + V
Sbjct: 411 RSDGRSPCELRPINSQCGLLPRAHGSALFTRG----ETQALAVVTLGDYQMAQRIDNLVD 466
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKE---YEIILKRTLQSI 121
+ ++K Y P + EV G+IG P + + ++ +R L+ I
Sbjct: 467 TEESKSFYLQY---------TFPPSSVGEV------GRIGAPNRREIGHGMLAERALEPI 511
Query: 122 CILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAIC 172
+ T V + +G+ ++ C AL DAG+P+K I
Sbjct: 512 LPPEEDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKFPVAGIA 562
>gi|406959954|gb|EKD87172.1| hypothetical protein ACD_37C00024G0016 [uncultured bacterium]
Length = 759
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 79/192 (41%), Gaps = 41/192 (21%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR PN +RP++ SIL R HGSA + +G ++ +G
Sbjct: 323 RPDGRKPNDIRPISAQVSILPRTHGSAIFQRG-----------------DTQALTVVTLG 365
Query: 65 SGDT-KVLAAVYGPKAGTKKNENPEKASIEVIWKP-----RTGQIGKPEKEYEIILKRTL 118
S +++ + G +A K I P TG++G P + I L
Sbjct: 366 SPRMEQLIESAEGEEA---------KRYIHHYSMPPYSVGETGRVGTPSRRE--IGHGAL 414
Query: 119 QSICILTINPNTTT-----SVIIQVVHDDGALLPCAINAACAALVDAGIPMKH--LAVAI 171
+ + PN T V+ +++ +G+ + + AL+DAG+P+K VA+
Sbjct: 415 AEKALANVIPNKDTFPYTIRVVSEILSSNGSTSMASACGSTLALMDAGVPIKTPVAGVAM 474
Query: 172 CCCSAESGYCIL 183
S E Y +L
Sbjct: 475 GMVSDEDKYVVL 486
>gi|300176535|emb|CBK24200.2| unnamed protein product [Blastocystis hominis]
Length = 600
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 70/154 (45%), Gaps = 13/154 (8%)
Query: 62 WVGSGDTKVLAAVYGPKAGTKKNENPEKASI-----------EVIWKPRTGQIGKPEKEY 110
+V G+ K++ +V GP+ + ++ +K ++ + +++P + + K
Sbjct: 20 YVELGNMKIMCSVQGPRDSFRSVDSQDKGALYCDFKYAPFAQKDVYQPNL--LNRETKSM 77
Query: 111 EIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVA 170
++L++ L + L P + I V+ DG L ++ A AL DAG+ + L
Sbjct: 78 SLLLEKILSTSVDLEAFPKAVVELYIMVLEVDGDPLGLSLMCASLALTDAGLNLFGLLGC 137
Query: 171 ICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNS 204
C E+ I++PT E +K K + L NS
Sbjct: 138 CCVSVMENNQMIVNPTSDELEKAKCYTQLAILNS 171
>gi|260948598|ref|XP_002618596.1| hypothetical protein CLUG_02055 [Clavispora lusitaniae ATCC 42720]
gi|238848468|gb|EEQ37932.1| hypothetical protein CLUG_02055 [Clavispora lusitaniae ATCC 42720]
Length = 239
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%)
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICIL 124
+G+TKV+ +V GP + E P +AS+E++ +P G EK E +L+ LQS +
Sbjct: 23 AGNTKVVVSVTGPIEPKPRQELPTQASLEIVVRPSRGLAATKEKVLEDLLRSVLQSAIVR 82
Query: 125 TINPNTTTSVIIQVVHDD 142
P V++Q + D
Sbjct: 83 YKYPRQLIQVVVQFLATD 100
>gi|342319249|gb|EGU11199.1| Exosome non-catalytic core component involved in 3'-5' RNA
processing and degradation [Rhodotorula glutinis ATCC
204091]
Length = 301
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 73/298 (24%), Positives = 104/298 (34%), Gaps = 84/298 (28%)
Query: 9 RNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDT 68
R LRPLA S L RA GSA F F G+
Sbjct: 7 RQATALRPLALSQGTLSRADGSAQ------------------FTF------------GNV 36
Query: 69 KVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINP 128
VL +V GP ++E ++A++E+ +P GQ G P K L + + +L + P
Sbjct: 37 SVLGSVTGPAEVRLRDELVDRATLEINVRPLRGQGGPPIKAAASTLSQLFAPLILLHLYP 96
Query: 129 NTTTSVIIQVVH------------------DD---------------GALLPCA-INAAC 154
+Q + DD GA A INAA
Sbjct: 97 RALIQHTLQTISSPSTTFTKPFSTDPSLRSDDKGKGKELEAPRGTGVGAGEKAARINAAM 156
Query: 155 AALVDAGIPMKHLAVAICCC-------SAESGYCILDPTKLEEQKMKGFAYLVFPNSILS 207
ALVDAG+ + + VA+ A+ LDPT EE++ F
Sbjct: 157 MALVDAGVQCRGMLVAVAVAFVPVQDGEADDEEMRLDPTSAEEEEATSTHVFAF------ 210
Query: 208 VLPEGSSLVQGEPMEHGIITSVTH-GAMSVDDYFHCLERGRAASAKLSDFLRRSLQSK 264
S QG G V G S D F + + A + F+R+S+++K
Sbjct: 211 ------SFGQGVGGTEGTCVGVDSVGTFSEDQLFDAQDLAQTACQTILAFIRKSVETK 262
>gi|294655825|ref|XP_458018.2| DEHA2C07766p [Debaryomyces hansenii CBS767]
gi|199430635|emb|CAG86078.2| DEHA2C07766p [Debaryomyces hansenii CBS767]
Length = 235
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 53/115 (46%), Gaps = 16/115 (13%)
Query: 66 GDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILT 125
G TKV+ +V GP + E P AS+E+I +P G EK E L+ LQSI I
Sbjct: 22 GTTKVITSVTGPIEPKIRQELPNLASLEIIVRPSLGVSTTREKALEDKLRSILQSIIIRY 81
Query: 126 INPNTTTSVIIQV------VHDDGA----------LLPCAINAACAALVDAGIPM 164
P +++Q ++D+G+ L AIN AL+DA I +
Sbjct: 82 KYPRQLIQIVVQFLITENNINDNGSNQHNKDFTSTELNAAINCCYFALIDANIAL 136
>gi|384439796|ref|YP_005654520.1| Polyribonucleotide nucleotidyltransferase [Thermus sp. CCB_US3_UF1]
gi|359290929|gb|AEV16446.1| Polyribonucleotide nucleotidyltransferase [Thermus sp. CCB_US3_UF1]
Length = 714
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 75/180 (41%), Gaps = 49/180 (27%)
Query: 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCY 61
E RADGR P LRP+ +L RAHGSA VFT
Sbjct: 325 EGKRADGRGPRDLRPIWIEVDVLPRAHGSA--------------------VFTR------ 358
Query: 62 WVGSGDTKVLAAVYGPKAGTKKNEN---------PEKASIEVIWKP-RTGQI------GK 105
G+T+VL V GT ++E EK + + P TG++ +
Sbjct: 359 ----GETQVLGTVT---LGTGRDEQIIDDLGIDETEKFLVHYNFPPFSTGEVKRLRGVSR 411
Query: 106 PEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMK 165
E + + KR L+++ + T V+ V+ +G+ + A C AL+DAG+P+K
Sbjct: 412 REVGHGNLAKRALKAVMPKEADFPYTVRVVGDVLESNGSSSMATVCAGCLALMDAGVPLK 471
>gi|255578123|ref|XP_002529931.1| Exosome complex exonuclease RRP41, putative [Ricinus communis]
gi|223530561|gb|EEF32439.1| Exosome complex exonuclease RRP41, putative [Ricinus communis]
Length = 180
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 51/112 (45%), Gaps = 7/112 (6%)
Query: 66 GDTKVLAAVYGPKAGTKKNENPE------KASIEVIWKPRTGQIGKPEKEYEIILKRTLQ 119
G+TKV+ +V+GP+ K + S P GQ G KE+ +L ++L+
Sbjct: 65 GNTKVIVSVFGPRESKKAMMYSDVGRLNCNVSYTTFSTPVRGQ-GSDCKEFSSMLHKSLE 123
Query: 120 SICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAI 171
+L P TT V V+ G+ L ++ A AL DAGI M L +
Sbjct: 124 GAIMLETFPKTTVDVFALVLESGGSDLSVIVSCASLALADAGIMMYDLVAGV 175
>gi|146104020|ref|XP_001469709.1| putative exosome complex exonuclease rrp41 [Leishmania infantum
JPCM5]
gi|134074079|emb|CAM72821.1| putative exosome complex exonuclease rrp41 [Leishmania infantum
JPCM5]
Length = 246
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 63/136 (46%), Gaps = 13/136 (9%)
Query: 51 FVFTSKCYFCYWVGSGDTKVLAAVYGPKAGTKKNENPEKASI---EVIWKPRTGQIGK-P 106
F S C + G +KV A V+GP+ K E + EV G+ + P
Sbjct: 30 FSTLSACDGSCDITLGQSKVCACVFGPRESLHKQEAKHDKGLVTCEVAVAAFAGENRRNP 89
Query: 107 EKEYEI------ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDA 160
++ ++ + + +S+ +L+ PN+ + I+V+ DG +NAAC AL+DA
Sbjct: 90 QRRSKLSEDIGAAVVQVARSVILLSQYPNSQIHIYIEVLQKDGNEKIACVNAACLALIDA 149
Query: 161 GIPMKHLAVAICCCSA 176
+ M+ A+CC A
Sbjct: 150 NVAMRD---AVCCIDA 162
>gi|328793187|ref|XP_623498.2| PREDICTED: exosome complex exonuclease MTR3-like isoform 1 [Apis
mellifera]
Length = 270
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 83/194 (42%), Gaps = 42/194 (21%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R D R+ N++R + I+ +A GSA ++
Sbjct: 37 RNDKRSNNEMRKIFLKTGIVSQAKGSA------------------------------YIE 66
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASI--EVIWKP------RTGQIGKPEKEYEIILKR 116
G+TKV+ +V+ P+ + +N + I E + P + Q EK+Y +IL+R
Sbjct: 67 LGNTKVVCSVFDPRELSNRNGYCSQGEIYCEFKFAPFSCQKRKIHQQDAEEKQYSLILQR 126
Query: 117 TLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSA 176
L+ PN V V+ + G+ L AI AA AL +AG+PM L A
Sbjct: 127 ALEPAHEF---PNFQVDVYAMVLDNAGSSLAAAIMAASTALANAGVPMFGLVTASTIGIY 183
Query: 177 ESGYCILDPTKLEE 190
++ Y ++DPT EE
Sbjct: 184 DNHY-LMDPTDTEE 196
>gi|326533940|dbj|BAJ93743.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 897
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 71/161 (44%), Gaps = 16/161 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R+DGR+ +LRP+ C IL RAHGSA +++G +T L + V
Sbjct: 447 RSDGRSACELRPINSQCGILPRAHGSALFTRG----ETQALAVVTLGDYQMAQRIDTLVD 502
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICIL 124
+ ++K Y P + EV RTG + E + ++ +R L+ I
Sbjct: 503 TEESKSFYLQY---------TFPPSSVGEV---GRTGAPNRREIGHGMLAERALEPILPP 550
Query: 125 TINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMK 165
++ T V + +G+ ++ C AL DAG+P+K
Sbjct: 551 EVDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIK 591
>gi|226313012|ref|YP_002772906.1| polyribonucleotide nucleotidyltransferase [Brevibacillus brevis
NBRC 100599]
gi|254782708|sp|C0ZF43.1|PNP_BREBN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|226095960|dbj|BAH44402.1| polyribonucleotide nucleotidyltransferase [Brevibacillus brevis
NBRC 100599]
Length = 715
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 80/187 (42%), Gaps = 29/187 (15%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR N++RPL+ +IL R HGSA +++G T C
Sbjct: 318 RPDGRALNEIRPLSSETTILSRTHGSAMFTRG----------------QTQALSVCTLGA 361
Query: 65 SGDTKVLAAVYGPKAGTK----KNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQS 120
GD ++L + G + + N P +P G+ E + + +R ++
Sbjct: 362 LGDVQILDGL-GLEESKRFMHHYNFPPYSVGEARPLRPP----GRREIGHGALGERAIEP 416
Query: 121 ICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKH----LAVAICCCSA 176
I + T ++ +V+ +G+ +I A+ AL+DAG+P+K +A+ +
Sbjct: 417 IIPSEVEFPYTIRLVSEVIESNGSTSQASICASVLALMDAGVPIKAPVAGIAMGLIMSKD 476
Query: 177 ESGYCIL 183
E + IL
Sbjct: 477 EKSFSIL 483
>gi|170067614|ref|XP_001868552.1| exosome component 6 [Culex quinquefasciatus]
gi|167863716|gb|EDS27099.1| exosome component 6 [Culex quinquefasciatus]
Length = 246
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 9/138 (6%)
Query: 62 WVGSGDTKVLAAVYGPKAGTKKNENPEKASI--EVIWKP------RTGQIGKPEKEYEII 113
++ G+TKV+ +V+ P+ K+N E + ++ + P + Q E+
Sbjct: 14 YLELGNTKVIVSVFDPREIPKQNTFRELGELYCDLKFSPFACVHRKNPQTDAEERSLAAA 73
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
+ + LQ + + PN + V+ DDG++L I AA AL DA I M + A
Sbjct: 74 MTKALQPVVCRHLFPNFQIDIFANVLEDDGSVLGAVITAAGLALSDATISMFDIVTA-TT 132
Query: 174 CSAESGYCILDPTKLEEQ 191
+ LDPT EE+
Sbjct: 133 VAVYGDRIYLDPTLAEER 150
>gi|125599245|gb|EAZ38821.1| hypothetical protein OsJ_23227 [Oryza sativa Japonica Group]
Length = 778
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 73/171 (42%), Gaps = 22/171 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R+DGR+P +LRP+ C +L RAHGSA +++G +T L + V
Sbjct: 324 RSDGRSPCELRPINSQCGLLPRAHGSALFTRG----ETQALAVVTLGDYQMAQRIDNLVD 379
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKE---YEIILKRTLQSI 121
+ ++K Y P + EV G+IG P + + ++ +R L+ I
Sbjct: 380 TEESKSFYLQY---------TFPPSSVGEV------GRIGAPNRREIGHGMLAERALEPI 424
Query: 122 CILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAIC 172
+ T V + +G+ ++ C AL DAG+P+K I
Sbjct: 425 LPPEEDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKFPVAGIA 475
>gi|332030317|gb|EGI70060.1| Exosome complex exonuclease MTR3 [Acromyrmex echinatior]
Length = 282
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 83/202 (41%), Gaps = 55/202 (27%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R D R+ N+LR + I+ +A GSA ++
Sbjct: 37 RHDDRSDNELRNIFLKTGIVSQAKGSA------------------------------YIE 66
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASI----EVI----------WKPRTGQIGKPEKEY 110
G+TKV+ +V+ P+ E P K E+ K + Q EKEY
Sbjct: 67 MGNTKVICSVFDPR------EIPNKTGFCMQGELFCEFKFASFSHRKRKLHQQDAEEKEY 120
Query: 111 EIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVA 170
+IL+R L+ L PN V V+ + G+ L AI AA AL +AG+PM L A
Sbjct: 121 SLILQRALEPAVCLQEFPNFQVDVYATVLDNGGSALAAAIMAASLALANAGVPMFGLVTA 180
Query: 171 --ICCCSAESGYCILDPTKLEE 190
I C G ++DPT +EE
Sbjct: 181 STIGIC---KGTYLVDPTDIEE 199
>gi|89900282|ref|YP_522753.1| polynucleotide phosphorylase/polyadenylase [Rhodoferax
ferrireducens T118]
gi|122479529|sp|Q21YD1.1|PNP_RHOFD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|89345019|gb|ABD69222.1| 3' exoribonuclease [Rhodoferax ferrireducens T118]
Length = 706
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 78/185 (42%), Gaps = 27/185 (14%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR+ +RP+ S+L R HGSA +++G +T L G
Sbjct: 317 RIDGRDTRTVRPIEIRNSVLPRTHGSALFTRG----ETQALVVTTLGTERDAQRIDALSG 372
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEI----ILKRTLQS 120
+ + + P T + TG++G P K EI + KR L +
Sbjct: 373 DYEDRFMLHYNMPPFATGE----------------TGRVGTP-KRREIGHGRLAKRALMA 415
Query: 121 ICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAES 178
+ T V+ ++ +G+ ++ C +L+DAG+PMK H+A +A+ E+
Sbjct: 416 VLPSKEEFPYTMRVVSEITESNGSSSMASVCGGCLSLMDAGVPMKAHVAGIAMGLIKEEN 475
Query: 179 GYCIL 183
+ +L
Sbjct: 476 RFAVL 480
>gi|297790594|ref|XP_002863182.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297309016|gb|EFH39441.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 61
Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 20/26 (76%), Positives = 23/26 (88%)
Query: 13 QLRPLACSCSILHRAHGSASWSQGFR 38
QLRPLACS +ILHR HGSASWS+G +
Sbjct: 1 QLRPLACSRNILHRPHGSASWSEGIQ 26
>gi|400602922|gb|EJP70520.1| exosome complex subunit Rrp46 [Beauveria bassiana ARSEF 2860]
Length = 273
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/218 (22%), Positives = 88/218 (40%), Gaps = 56/218 (25%)
Query: 70 VLAAVYGPKAGTKKNENPEKASIEVIWKPRTG---------QIGKPEKEYEIILKRTLQS 120
V AV GP +++ENP +A I+V +P G G E+ E IL+R L+
Sbjct: 30 VTGAVNGPIEAQRRDENPFEALIDVNVRPAAGVGADEGIWRDTGTAERLLESILQRALRQ 89
Query: 121 ICILTINPNTTTSVIIQVVHD---------------DGALLPCAINAACAALVDAGIPMK 165
+ + P + + +QV + A++P ++AA +L+ A IP+K
Sbjct: 90 LIPIRNFPRSMIQITLQVTETPENAYANTKVVQAQLNLAIIPALLHAAILSLLTAAIPLK 149
Query: 166 HLAVAICCC--------------SAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPE 211
+A A+ S+ S ++DP+ E + L
Sbjct: 150 TIATAVTLAVPSDHGDGSSSSSSSSSSSNIVVDPSAREADTARSLHVL------------ 197
Query: 212 GSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAA 249
G ++ ++ + + GA +VD++ L+ G+ A
Sbjct: 198 ------GYTADNELLLAESQGAFNVDEWEAVLQTGQQA 229
>gi|157877098|ref|XP_001686881.1| putative exosome complex exonuclease rrp41 [Leishmania major strain
Friedlin]
gi|68129956|emb|CAJ09264.1| putative exosome complex exonuclease rrp41 [Leishmania major strain
Friedlin]
Length = 246
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 63/136 (46%), Gaps = 13/136 (9%)
Query: 51 FVFTSKCYFCYWVGSGDTKVLAAVYGPKAGTKKNENPEKASI---EVIWKPRTGQIGK-P 106
F S C + G +KV A V+GP+ K E + EV G+ + P
Sbjct: 30 FGTLSACDGSCDITLGQSKVCACVFGPRESLHKQEAKHDKGLVTCEVAVAAFAGENRRNP 89
Query: 107 EKEYEI------ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDA 160
++ ++ + + +S+ +L+ PN+ + I+V+ DG +NAAC AL+DA
Sbjct: 90 QRRSKLSEDIGAAVVQVARSVILLSQYPNSQIHIYIEVLQQDGNEKIACVNAACLALIDA 149
Query: 161 GIPMKHLAVAICCCSA 176
+ M+ A+CC A
Sbjct: 150 NVAMRD---AVCCIDA 162
>gi|344229744|gb|EGV61629.1| hypothetical protein CANTEDRAFT_98824 [Candida tenuis ATCC 10573]
Length = 234
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 87/218 (39%), Gaps = 21/218 (9%)
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICIL 124
+G TKVL +V GP K E P AS+E+I +P G E L+ L S+ I
Sbjct: 19 NGRTKVLVSVSGPIEPKIKQELPNLASLEIILRPSIGTANTRENLLTDKLRSILSSLIIR 78
Query: 125 TINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILD 184
P V++QV+ + IN + D + I CC + +LD
Sbjct: 79 HKYPRQLIQVVVQVLSLETD--AVVINNFENTVDDLKVFNIEFTDIINCCY----FALLD 132
Query: 185 PTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSV------------THG 232
+ G + V + + PE S L+ + H ++ S+ + G
Sbjct: 133 SNIFLYESFIGVSQSVSEDKSIINTPELSDLIHSKS-HHLLVFSIVDSKPSKIVYADSKG 191
Query: 233 AMSVDDYFHCLERG-RAASAKLSDFLRRSLQSKLPGDL 269
S + F ++ G + A A ++F R+ ++ K+ D
Sbjct: 192 EFSKQELFEVMDNGFKIAGANFTEF-RQLVEKKIEDDF 228
>gi|367052063|ref|XP_003656410.1| hypothetical protein THITE_2097043 [Thielavia terrestris NRRL 8126]
gi|347003675|gb|AEO70074.1| hypothetical protein THITE_2097043 [Thielavia terrestris NRRL 8126]
Length = 253
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/221 (21%), Positives = 93/221 (42%), Gaps = 21/221 (9%)
Query: 70 VLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPN 129
V +V GP +++E+ +A ++VI +P G G E+ E IL+ +L + ++ P
Sbjct: 30 VTGSVNGPIEAQRRDEHAYEAHVDVIVRPAAGVGGTRERHLESILQSSLSQLILVKDFPR 89
Query: 130 TTTSVIIQVVHD---------------DGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
+ +++QV + + +++P + A AL+ A +PM+ A A
Sbjct: 90 SLIQIVLQVENSPENDYVDTKLVQASLNFSIMPALLQTAVLALLSAAVPMRATATATAIA 149
Query: 175 SAESG---YCILDPTKLEEQKMKGFAYLVFP--NSILSVLPEGSSLVQGEPMEHGIITSV 229
A+ G I+DP+ + + L F + +L EG V+ + +
Sbjct: 150 VAQQGDHKKTIIDPSPRDIETAHSVHVLAFTSHDELLLAESEGDFTVRDWDDVYETAKRI 209
Query: 230 -THGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGDL 269
A + L+ + FL+ +++SK+ DL
Sbjct: 210 CCRSARPKEGMAMVLDEDDVGGPDMRHFLQSTMESKVAADL 250
>gi|320591734|gb|EFX04173.1| exosome complex exonuclease rrp41 [Grosmannia clavigera kw1407]
Length = 511
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 7/114 (6%)
Query: 90 ASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCA 149
A + + R + K +E + RTL ++ + P +T ++ + V+ DG+LL
Sbjct: 316 AGFSSVNRQRRSRQDKRTQEMAATISRTLAAVLHTHLYPRSTITISLHVLSQDGSLLAAL 375
Query: 150 INAACAALVDAGIPMKHLAVAICCCSAESGYC-------ILDPTKLEEQKMKGF 196
INAA A VDAGIPM VA S+ S +LD EEQ++ G
Sbjct: 376 INAATLAAVDAGIPMADYVVACSAGSSSSYAAADDAADPLLDLNLQEEQELPGL 429
>gi|169614405|ref|XP_001800619.1| hypothetical protein SNOG_10343 [Phaeosphaeria nodorum SN15]
gi|111061558|gb|EAT82678.1| hypothetical protein SNOG_10343 [Phaeosphaeria nodorum SN15]
Length = 249
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 13/137 (9%)
Query: 70 VLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKP-EKEYEIILKRTLQSICILTINP 128
++ AV GP +++E PE+A+IEV +P G +G P E+ E +L TL+SI + + P
Sbjct: 27 IIGAVNGPIEVLRRDEMPEEATIEVNVRPAVG-VGSPKERHLETLLHNTLRSIILTRLIP 85
Query: 129 NTTTSVIIQV-----------VHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAE 177
T + +QV + +LP ++ A +L+ A IP+ +
Sbjct: 86 RTLVQLTLQVRSLPEEDAMTGISSTLTILPHLLHTALLSLLSASIPLSTTLTCVLVALPA 145
Query: 178 SGYCILDPTKLEEQKMK 194
S +L PT E + K
Sbjct: 146 SSTPLLSPTANELLRAK 162
>gi|398024542|ref|XP_003865432.1| exosome complex exonuclease rrp41, putative [Leishmania donovani]
gi|322503669|emb|CBZ38755.1| exosome complex exonuclease rrp41, putative [Leishmania donovani]
Length = 246
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 63/136 (46%), Gaps = 13/136 (9%)
Query: 51 FVFTSKCYFCYWVGSGDTKVLAAVYGPKAGTKKNENPEKASI---EVIWKPRTGQIGK-P 106
F S C + G +KV A V+GP+ K E + EV G+ + P
Sbjct: 30 FGTLSACDGSCDITLGQSKVCACVFGPRESLHKQEAKHDKGLVTCEVAVAAFAGENRRNP 89
Query: 107 EKEYEI------ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDA 160
++ ++ + + +S+ +L+ PN+ + I+V+ DG +NAAC AL+DA
Sbjct: 90 QRRSKLSEDIGAAVVQVARSVILLSQYPNSQIHIYIEVLQKDGNEKIACVNAACLALIDA 149
Query: 161 GIPMKHLAVAICCCSA 176
+ M+ A+CC A
Sbjct: 150 NVAMRD---AVCCIDA 162
>gi|328859073|gb|EGG08183.1| hypothetical protein MELLADRAFT_105134 [Melampsora larici-populina
98AG31]
Length = 285
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 81/209 (38%), Gaps = 35/209 (16%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R+DGR Q RP+ ++ A+GS+ ++
Sbjct: 50 RSDGRTNQQFRPIHVKTKVVSSANGSS------------------------------YLE 79
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEY--EIILKRTL-QSI 121
+ D K++ AVYGPK T N + +I + P + E L + L QS+
Sbjct: 80 TTDCKLICAVYGPKPRTTANSSSSNLNIHFKFTPFSLSTSFTSSISTLESNLSQALHQSL 139
Query: 122 C-ILTINPNTTTSVIIQVVHDDGAL-LPCAINAACAALVDAGIPMKHLAVAICCCSAESG 179
L +NP + + V+ L + I AA AL AG+P L + I +
Sbjct: 140 APSLLLNPTEFYDLHLTVLQSHSPLSITHPILAATIALGSAGVPTLGLVIGISAAISSDL 199
Query: 180 YCILDPTKLEEQKMKGFAYLVFPNSILSV 208
++DPT +E Q L + SI SV
Sbjct: 200 ELLIDPTFIESQNALAHLDLSYLTSIDSV 228
>gi|313212644|emb|CBY36592.1| unnamed protein product [Oikopleura dioica]
gi|313225048|emb|CBY20841.1| unnamed protein product [Oikopleura dioica]
Length = 232
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 63/139 (45%), Gaps = 10/139 (7%)
Query: 55 SKCYFCYWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKP-EKEYEII 113
S+C + S V+ V GP ++ ++P + ++ VI P + Q P ++ E
Sbjct: 27 SRCDGSAMLVSELGTVVCGVNGPVEAKEREQDPTRVTVNVILHPPSNQQTGPIHRQIERT 86
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
+ L S+ NP +I+Q + + + P +N A A++DAGI M H+A
Sbjct: 87 ISGLLASLVQKEANPRCQIQIILQPLESEFCVTPL-VNCAILAMLDAGIQMHHVAAG--- 142
Query: 174 CSAESGYCILDPTKLEEQK 192
G L K+EE++
Sbjct: 143 -----GTVALVENKIEEKQ 156
>gi|157114057|ref|XP_001657962.1| hypothetical protein AaeL_AAEL006697 [Aedes aegypti]
gi|108877466|gb|EAT41691.1| AAEL006697-PA [Aedes aegypti]
Length = 307
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 60/138 (43%), Gaps = 9/138 (6%)
Query: 62 WVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWK--------PRTGQIGKPEKEYEII 113
++ G+TKV+ +V+ P+ K+N+ + +K + Q E+
Sbjct: 69 YLELGNTKVIVSVFDPREIPKQNKFRALGELYCDFKFSPFACIHRKNPQTDAEERSLAAA 128
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
+ + LQ + + PN + V+ DDG++L I AA AL DA I M + A
Sbjct: 129 MTKALQPVVCRHLFPNFQIDIFANVLEDDGSVLAAVITAAGLALSDATISMFDIVTASTV 188
Query: 174 CSAESGYCILDPTKLEEQ 191
E LDPT EE+
Sbjct: 189 AVIED-KIYLDPTLAEER 205
>gi|94469342|gb|ABF18520.1| exosomal 3'-5' exoribonuclease complex subunit Rrp41-like protein
[Aedes aegypti]
Length = 307
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 60/138 (43%), Gaps = 9/138 (6%)
Query: 62 WVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWK--------PRTGQIGKPEKEYEII 113
++ G+TKV+ +V+ P+ K+N+ + +K + Q E+
Sbjct: 69 YLELGNTKVIVSVFDPREIPKQNKFRALGELYCDFKFSPFACIHRKNPQTDAEERSLAAA 128
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
+ + LQ + + PN + V+ DDG++L I AA AL DA I M + A
Sbjct: 129 MTKALQPVVCRHLFPNFQIDIFANVLEDDGSVLAAVITAAGLALSDATISMFDIVTASTV 188
Query: 174 CSAESGYCILDPTKLEEQ 191
E LDPT EE+
Sbjct: 189 AVIED-KIYLDPTLAEER 205
>gi|381190722|ref|ZP_09898239.1| polynucleotide phosphorylase/polyadenylase [Thermus sp. RL]
gi|380451431|gb|EIA39038.1| polynucleotide phosphorylase/polyadenylase [Thermus sp. RL]
Length = 713
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 83/192 (43%), Gaps = 35/192 (18%)
Query: 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCY 61
E RADGR P LRP+ +L RAHGSA +++G ++
Sbjct: 324 EGKRADGRGPKDLRPIWIEVDVLPRAHGSAVFTRG-----------------ETQVLGTV 366
Query: 62 WVGSG-DTKVLAAVYGPKAGTKKNEN-------PEKASIEVIWKPRTGQIGKPEKEYEII 113
+G+G D ++L + G + E P ++ EV R + + E + +
Sbjct: 367 TLGTGRDEQILDDL-----GIDETEKFLVHYNFPPFSTGEVR---RLRGVSRREVGHGNL 418
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKH--LAVAI 171
KR L+++ + T V+ V+ +G+ + A C AL+DAG+P++ VA+
Sbjct: 419 AKRALKAVMPKEEDFPYTIRVVGDVLESNGSSSMATVCAGCLALMDAGVPIRAPVAGVAM 478
Query: 172 CCCSAESGYCIL 183
E+ IL
Sbjct: 479 GLVWEENRAVIL 490
>gi|322792608|gb|EFZ16508.1| hypothetical protein SINV_11514 [Solenopsis invicta]
Length = 282
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 81/194 (41%), Gaps = 39/194 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR+ N+ R + I+ +A GSA ++
Sbjct: 37 RHDGRSHNEFRNIFLKTGIVSQAKGSA------------------------------YIE 66
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASI--EVIWKP------RTGQIGKPEKEYEIILKR 116
G+TK++ +V+ P+ K + + E + P + Q EKEY +IL+R
Sbjct: 67 IGNTKIICSVFDPREIPNKTGYCVQGELFCEFKFAPFSHRKRKLHQQDAEEKEYSLILQR 126
Query: 117 TLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSA 176
L+ L PN V V+ + G+ L AI AA AL +AG+PM L A
Sbjct: 127 ALEPAVCLQEFPNFQVDVYATVIDNGGSALAAAIMAASLALANAGVPMFGLVTASTVGIC 186
Query: 177 ESGYCILDPTKLEE 190
+ Y ++DPT EE
Sbjct: 187 DQTY-LVDPTDTEE 199
>gi|384491910|gb|EIE83106.1| hypothetical protein RO3G_07811 [Rhizopus delemar RA 99-880]
Length = 255
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 75/166 (45%), Gaps = 15/166 (9%)
Query: 62 WVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWK-------PRTGQIGKPE-KEYEII 113
++ G+TKV AVYGP+ KK+ + ++ +K R + PE KE+ I
Sbjct: 61 YIEVGNTKVACAVYGPRQ-LKKSSFSQNGTLNCDFKFSPFSCVKRRSAVRDPEEKEFSQI 119
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDG--ALLPCAINAACAALVDAGIPMKHLAVAI 171
L + L L + P +T + I V+ DG + L AI A+ AL DAGI M V
Sbjct: 120 LIQALSPAVRLELLPKSTIDIYINVLESDGTSSCLAAAIVASSIALADAGIEMLD-QVTA 178
Query: 172 CCCSAESGYCILDPTKLEEQKMKGFAYLVFP---NSILSVLPEGSS 214
C ++D T+ EE + G L F N + +L G S
Sbjct: 179 CSSVFAQDQILMDGTEREESQKDGSLVLSFMPSLNEVTHILQIGQS 224
>gi|328875321|gb|EGG23686.1| hypothetical protein DFA_05820 [Dictyostelium fasciculatum]
Length = 307
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 58/118 (49%), Gaps = 10/118 (8%)
Query: 62 WVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWK----PRTGQI-----GKPEKEYEI 112
++ +TKV+ +V+GP+A + K E E A K R G+ EK+ I
Sbjct: 78 YIEIENTKVICSVHGPRA-SPKTELFESAKFSCELKFASFARPGERIDYMESAKEKDLSI 136
Query: 113 ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVA 170
L++++ L P T V + V++DDG +L AI AA AL DAG+ M + A
Sbjct: 137 NLRQSIIGAIRLEKYPKTVIDVYVMVLNDDGGVLVAAITAASMALADAGVEMYDMVSA 194
>gi|55981108|ref|YP_144405.1| polynucleotide phosphorylase/polyadenylase [Thermus thermophilus
HB8]
gi|81364132|sp|Q5SJ75.1|PNP_THET8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|55772521|dbj|BAD70962.1| polynucleotide phosphorylase [Thermus thermophilus HB8]
Length = 713
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 83/192 (43%), Gaps = 35/192 (18%)
Query: 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCY 61
E RADGR P LRP+ +L RAHGSA +++G ++
Sbjct: 324 EGKRADGRGPKDLRPIWIEVDVLPRAHGSAVFTRG-----------------ETQVLGTV 366
Query: 62 WVGSG-DTKVLAAVYGPKAGTKKNEN-------PEKASIEVIWKPRTGQIGKPEKEYEII 113
+G+G D ++L + G + E P ++ EV R + + E + +
Sbjct: 367 TLGTGRDEQILDDL-----GIDETEKFLVHYNFPPFSTGEVR---RLRGVSRREVGHGNL 418
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKH--LAVAI 171
KR L+++ + T V+ V+ +G+ + A C AL+DAG+P++ VA+
Sbjct: 419 AKRALKAVMPKEEDFPYTIRVVGDVLESNGSSSMATVCAGCLALMDAGVPIRAPVAGVAM 478
Query: 172 CCCSAESGYCIL 183
E+ IL
Sbjct: 479 GLVWEENRAVIL 490
>gi|384431325|ref|YP_005640685.1| Polyribonucleotide nucleotidyltransferase [Thermus thermophilus
SG0.5JP17-16]
gi|333966793|gb|AEG33558.1| Polyribonucleotide nucleotidyltransferase [Thermus thermophilus
SG0.5JP17-16]
Length = 713
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 83/192 (43%), Gaps = 35/192 (18%)
Query: 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCY 61
E RADGR P LRP+ +L RAHGSA +++G ++
Sbjct: 324 EGKRADGRGPKDLRPIWIEVDVLPRAHGSAVFTRG-----------------ETQVLGTV 366
Query: 62 WVGSG-DTKVLAAVYGPKAGTKKNEN-------PEKASIEVIWKPRTGQIGKPEKEYEII 113
+G+G D ++L + G + E P ++ EV R + + E + +
Sbjct: 367 TLGTGRDEQILDDL-----GIDETEKFLVHYNFPPFSTGEVR---RLRGVSRREVGHGNL 418
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKH--LAVAI 171
KR L+++ + T V+ V+ +G+ + A C AL+DAG+P++ VA+
Sbjct: 419 AKRALKAVMPKEEDFPYTIRVVGDVLESNGSSSMATVCAGCLALMDAGVPIRAPVAGVAM 478
Query: 172 CCCSAESGYCIL 183
E+ IL
Sbjct: 479 GLVWEENRAVIL 490
>gi|449019724|dbj|BAM83126.1| similar to ribonuclease PH [Cyanidioschyzon merolae strain 10D]
Length = 294
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 97/253 (38%), Gaps = 83/253 (32%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFC 60
M+ R DGR+ RPL + +L RA GS+ S G
Sbjct: 1 MDSVRPDGRSSEAFRPLRVALGVLERADGSSLLSLG------------------------ 36
Query: 61 YWVGSGDTKVLAAVYGP-------KAGTKKNENPEKASIEVIW---KP------------ 98
+T+VL +VYGP ++G + P + +V W +P
Sbjct: 37 ------ETRVLVSVYGPLQSELSTRSGGVAVQTPRDGTCQVTWLEPEPTLSDILTTTREA 90
Query: 99 -RTGQIGKP----------------------EKEYEIILKRTLQSICILTINPNTTTSVI 135
R G G P E +L+R S+ IL ++ VI
Sbjct: 91 HRGGVQGAPYPVLPLSAEQAAVRSRATGLRRHPATETLLERLFSSVIILMEYASSCIHVI 150
Query: 136 IQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGY------CILDPT--K 187
+QV+H DG L A+ AA AL+DAG+ ++ VA+ + + ++DPT +
Sbjct: 151 VQVLHHDGGTLAAAVIAASLALMDAGVSLRGFLVAVPILARSIDHEQADVSWLVDPTLAE 210
Query: 188 LEEQKMKGFAYLV 200
L +Q + ++V
Sbjct: 211 LRQQSLGSSLWVV 223
>gi|340052331|emb|CCC46607.1| putative exosome complex exonuclease 1 [Trypanosoma vivax Y486]
Length = 270
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 63/161 (39%), Gaps = 31/161 (19%)
Query: 62 WVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEK------------- 108
W G T V AV GP A +++ S++V R G ++
Sbjct: 34 WYSQGLTAVCVAVNGPVAAKQEDYRKCVVSVQVTHASRIPPAGGADRLCVIQKQEQQRRE 93
Query: 109 --EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKH 166
E L +++I L P V + V+ +DG+LL A N AL+DAG+P +
Sbjct: 94 DGEIGQFLTSIVEAIVRLERFPRCVLQVHVTVLFNDGSLLAVATNGLMCALLDAGVPCRT 153
Query: 167 LAVAIC--CCSAESG--------------YCILDPTKLEEQ 191
A+C CS + +LDPT EE+
Sbjct: 154 TVAAVCLLACSTDGNDQKNSSTEQVSSTPVLLLDPTLAEEE 194
>gi|257094905|ref|YP_003168546.1| polynucleotide phosphorylase/polyadenylase [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
gi|257047429|gb|ACV36617.1| Polyribonucleotide nucleotidyltransferase [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
Length = 706
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 81/173 (46%), Gaps = 34/173 (19%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR+ +RP+A +L RAHGS+ +++G ++ +G
Sbjct: 315 RIDGRDTRTVRPIAIRSGVLPRAHGSSLFTRG-----------------ETQAIVVATLG 357
Query: 65 SG-DTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRT----GQIGKPEKE---YEIILKR 116
+G D +++ A+ G E E+ + + P G++G P++ + + KR
Sbjct: 358 TGRDEQIIDALSG--------EYRERFMLHYNFPPYATGECGRVGTPKRREVGHGRLAKR 409
Query: 117 TLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMK-HLA 168
L ++ + + T V+ ++ +G+ ++ A AL+DAG+P+K H+A
Sbjct: 410 ALLAVLPAPEDFSYTIRVVSEITESNGSSSMASVCGASLALMDAGVPLKAHVA 462
>gi|386360362|ref|YP_006058607.1| polyribonucleotide nucleotidyltransferase [Thermus thermophilus
JL-18]
gi|383509389|gb|AFH38821.1| polyribonucleotide nucleotidyltransferase [Thermus thermophilus
JL-18]
Length = 713
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 83/192 (43%), Gaps = 35/192 (18%)
Query: 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCY 61
E RADGR P LRP+ +L RAHGSA +++G ++
Sbjct: 324 EGKRADGRGPKDLRPIWIEVDVLPRAHGSAVFTRG-----------------ETQVLGTV 366
Query: 62 WVGSG-DTKVLAAVYGPKAGTKKNEN-------PEKASIEVIWKPRTGQIGKPEKEYEII 113
+G+G D ++L + G + E P ++ EV R + + E + +
Sbjct: 367 TLGTGRDEQILDDL-----GIDETEKFLVHYNFPPFSTGEVR---RLRGVSRREVGHGNL 418
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKH--LAVAI 171
KR L+++ + T V+ V+ +G+ + A C AL+DAG+P++ VA+
Sbjct: 419 AKRALKAVMPKEEDFPYTIRVVGDVLESNGSSSMATVCAGCLALMDAGVPIRAPVAGVAM 478
Query: 172 CCCSAESGYCIL 183
E+ IL
Sbjct: 479 GLVWEENRAVIL 490
>gi|46199080|ref|YP_004747.1| polynucleotide phosphorylase [Thermus thermophilus HB27]
gi|75424073|sp|Q9ZAE1.1|PNP_THETH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|81405907|sp|Q72JJ8.1|PNP_THET2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|4138650|emb|CAB06341.1| polynucleotide phosphorylase [Thermus thermophilus]
gi|46196704|gb|AAS81120.1| polynucleotide phosphorylase [Thermus thermophilus HB27]
Length = 713
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 83/192 (43%), Gaps = 35/192 (18%)
Query: 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCY 61
E RADGR P LRP+ +L RAHGSA +++G ++
Sbjct: 324 EGKRADGRGPKDLRPIWIEVDVLPRAHGSAVFTRG-----------------ETQVLGTV 366
Query: 62 WVGSG-DTKVLAAVYGPKAGTKKNEN-------PEKASIEVIWKPRTGQIGKPEKEYEII 113
+G+G D ++L + G + E P ++ EV R + + E + +
Sbjct: 367 TLGTGRDEQILDDL-----GIDETEKFLVHYNFPPFSTGEVR---RLRGVSRREVGHGNL 418
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKH--LAVAI 171
KR L+++ + T V+ V+ +G+ + A C AL+DAG+P++ VA+
Sbjct: 419 AKRALKAVMPKEEDFPYTIRVVGDVLESNGSSSMATVCAGCLALMDAGVPIRAPVAGVAM 478
Query: 172 CCCSAESGYCIL 183
E+ IL
Sbjct: 479 GLVWEENRAVIL 490
>gi|401414266|ref|XP_003871631.1| putative ribosomal RNA processing protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322487849|emb|CBZ23093.1| putative ribosomal RNA processing protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 324
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 92/227 (40%), Gaps = 34/227 (14%)
Query: 62 WVGSGDTKVLAAVYGPKAGTKKNENPEKASIEV------IWKPRTGQIGKP---EKEYEI 112
W G T V+ +++GP KN+ + ++V + P G K E++ E+
Sbjct: 34 WYAQGQTAVMVSIHGPT--IAKNDEYDTCIVQVRIQHAGVLAPAAGGAEKALYEERKLEL 91
Query: 113 I-----------LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAG 161
+ L+ TL ++ + P V + V+ DDG+L A+NA +AL+DAG
Sbjct: 92 LTRTDALALGSLLESTLNAVFVRERFPRCVLVVDVVVIRDDGSLPAVALNAVMSALLDAG 151
Query: 162 IPMKHLAVAICC--------CSAESGYCILDPTKLEEQKMKG--FAYLVFPNSILSVLPE 211
+P + A+C + SG + ++ G + YL+ P S L
Sbjct: 152 LPCRTTMAAVCVAVVTHDGEADSTSGPAQDRHSSVDGSSSAGSVYEYLLDPTSAEESLGV 211
Query: 212 GSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLR 258
G + E + T T A S RGR A+ ++ D R
Sbjct: 212 GYAAPAPSAAEKAVATGATSIATSSAASMPL--RGRNAAQQVQDKYR 256
>gi|171695618|ref|XP_001912733.1| hypothetical protein [Podospora anserina S mat+]
gi|170948051|emb|CAP60215.1| unnamed protein product [Podospora anserina S mat+]
Length = 277
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 47/104 (45%), Gaps = 9/104 (8%)
Query: 109 EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLA 168
E + L TL + + P++ ++ + V+ DG+LL INAA A VDAGIPM
Sbjct: 111 EMQFTLSNTLAATLHTHLFPHSQINISLHVLSQDGSLLAALINAATLACVDAGIPMTDYV 170
Query: 169 VAICCCSAESGYC--------ILDPTKLEEQKMKGFAYLVFPNS 204
A C + S Y +LD EEQ++ G S
Sbjct: 171 TA-CTAGSTSTYAANDEGADPLLDLNHQEEQELPGLTVATLGES 213
>gi|91774427|ref|YP_544183.1| polynucleotide phosphorylase/polyadenylase [Methylobacillus
flagellatus KT]
gi|123078691|sp|Q1GXD2.1|PNP_METFK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|91708414|gb|ABE48342.1| 3' exoribonuclease [Methylobacillus flagellatus KT]
Length = 714
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 78/174 (44%), Gaps = 36/174 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR+ +RP++ +L R HGSA +++G ++ +G
Sbjct: 315 RIDGRDTRTVRPISIRTGVLPRTHGSALFTRG-----------------ETQALVVATLG 357
Query: 65 SG-DTKVLAAVYGPKAGTKKNENPEKASIEVIWKP----RTGQIGKPEKEYEI----ILK 115
+G D +++ A+ G E ++ + P TG++G P K EI + K
Sbjct: 358 TGRDEQIIDALQG--------EYADRFMLHYNMPPYATGETGRVGTP-KRREIGHGRLAK 408
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMK-HLA 168
R L ++ T V+ ++ +G+ ++ C +L+DAG+P+K H+A
Sbjct: 409 RALLAVLPSQEEFGYTIRVVSEITESNGSSSMASVCGGCLSLLDAGVPLKAHVA 462
>gi|398409290|ref|XP_003856110.1| hypothetical protein MYCGRDRAFT_65596 [Zymoseptoria tritici IPO323]
gi|339475995|gb|EGP91086.1| hypothetical protein MYCGRDRAFT_65596 [Zymoseptoria tritici IPO323]
Length = 250
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 77/189 (40%), Gaps = 40/189 (21%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR N+LR + S A GS+ YF
Sbjct: 14 RIDGRRWNELRRIQGQMSTQAAADGSS--------------------------YFEM--- 44
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEV---------IWKPRTGQIGKPEKEYEIILK 115
G+TKV+ V+GP+ + +A+IEV + + + K +E + +
Sbjct: 45 -GNTKVMCTVHGPRQSARSGGGTREATIEVEIGVAGFSGTERKKRARADKRTQEMQHSIS 103
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
P++T ++++ V+ DGALL +NAA ALVDAG+PM +A C
Sbjct: 104 SAFSDTVFTAFYPSSTITIVLHVLSQDGALLAACLNAATLALVDAGVPMTDY-IAACTTG 162
Query: 176 AESGYCILD 184
+ + Y D
Sbjct: 163 STASYASND 171
>gi|302502983|ref|XP_003013452.1| hypothetical protein ARB_00270 [Arthroderma benhamiae CBS 112371]
gi|291177016|gb|EFE32812.1| hypothetical protein ARB_00270 [Arthroderma benhamiae CBS 112371]
Length = 302
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 59/131 (45%), Gaps = 21/131 (16%)
Query: 62 WVGSGDTKVLAAVYGPKAGTKKNENPEKAS--IEVIW------------KPRTGQIG--- 104
++ G+T VL V+GP G K++E A I V+ K G G
Sbjct: 42 YLSMGNTAVLCTVHGPAEG-KRSETAGAAGAVINVVVNLAGFANVDRKKKSAAGSGGGDR 100
Query: 105 KPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPM 164
+ E +L+ Q + P +T SV + V+ DG+L +NA ALVDAGIPM
Sbjct: 101 QATTELATLLRDAFQPHIHAHLYPRSTISVHVSVLSSDGSLFAACLNACTLALVDAGIPM 160
Query: 165 KHLAVAICCCS 175
L +C C+
Sbjct: 161 PGL---LCACT 168
>gi|42782895|ref|NP_980142.1| polynucleotide phosphorylase [Bacillus cereus ATCC 10987]
gi|402556072|ref|YP_006597343.1| polynucleotide phosphorylase/polyadenylase [Bacillus cereus FRI-35]
gi|81409473|sp|Q732R5.1|PNP_BACC1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|42738822|gb|AAS42750.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus ATCC
10987]
gi|401797282|gb|AFQ11141.1| polynucleotide phosphorylase/polyadenylase [Bacillus cereus FRI-35]
Length = 712
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 78/182 (42%), Gaps = 21/182 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +++RPLA IL R HGS +++G T C
Sbjct: 316 RPDGRKGDEIRPLASEVGILSRTHGSGLFTRG----------------QTQALSICTLGA 359
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEV-IWKPRTGQIGKPEKEYEIILKRTLQSICI 123
GD ++L + G + + + S V +P G G+ E + + +R L+ +
Sbjct: 360 LGDVQILDGL-GVEESKRFMHHYNFPSFSVGETRPMRGP-GRREIGHGALGERALEPVIP 417
Query: 124 LTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESG--YC 181
+ T ++ +V+ +G+ +I + A++DAG+P+K I +SG Y
Sbjct: 418 SEKDFPYTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHYT 477
Query: 182 IL 183
IL
Sbjct: 478 IL 479
>gi|170582819|ref|XP_001896302.1| 3' exoribonuclease family, domain 1 containing protein [Brugia
malayi]
gi|158596526|gb|EDP34857.1| 3' exoribonuclease family, domain 1 containing protein [Brugia
malayi]
Length = 277
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 13/138 (9%)
Query: 62 WVGSGDTKVLAAVYGPKAGTKKNE-NPEKASIEVIWKPRTGQ---------IGKPEKEYE 111
+V G TK++ +V GPK TK + +P + I V K + + KE
Sbjct: 67 YVEFGSTKIICSVDGPKEITKSADVDPTEGQIYVFLKNISAESNSLSGSNSFSASNKESN 126
Query: 112 II---LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLA 168
I ++ L+SI L + V I V++DDG +L ++ A+ AL+D+GI + +
Sbjct: 127 RIRNAIESALRSIVCLELFCKAQIDVEITVLNDDGGVLAASLIASSLALIDSGIQVYDVC 186
Query: 169 VAICCCSAESGYCILDPT 186
VA G I+DP+
Sbjct: 187 VAAHIVMLTDGRIIVDPS 204
>gi|228992535|ref|ZP_04152462.1| Polyribonucleotide nucleotidyltransferase [Bacillus pseudomycoides
DSM 12442]
gi|228998583|ref|ZP_04158170.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides
Rock3-17]
gi|229006082|ref|ZP_04163770.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides
Rock1-4]
gi|228755158|gb|EEM04515.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides
Rock1-4]
gi|228761051|gb|EEM10010.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides
Rock3-17]
gi|228767169|gb|EEM15805.1| Polyribonucleotide nucleotidyltransferase [Bacillus pseudomycoides
DSM 12442]
Length = 717
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 78/182 (42%), Gaps = 21/182 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +++RPLA IL R HGS +++G T C
Sbjct: 316 RPDGRKGDEIRPLASEVGILSRTHGSGLFTRG----------------QTQALSICTLGA 359
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEV-IWKPRTGQIGKPEKEYEIILKRTLQSICI 123
GD ++L + G + + + S V +P G G+ E + + +R L+ +
Sbjct: 360 LGDVQILDGL-GVEESKRFMHHYNFPSFSVGETRPMRGP-GRREIGHGALGERALEPVIP 417
Query: 124 LTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESG--YC 181
+ T ++ +V+ +G+ +I + A++DAG+P+K I +SG Y
Sbjct: 418 SEQDFPYTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHYT 477
Query: 182 IL 183
IL
Sbjct: 478 IL 479
>gi|423511841|ref|ZP_17488372.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus HuA2-1]
gi|402450102|gb|EJV81936.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus HuA2-1]
Length = 722
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 78/182 (42%), Gaps = 21/182 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +++RPLA IL R HGS +++G T C
Sbjct: 316 RPDGRKGDEIRPLASEVGILSRTHGSGLFTRG----------------QTQALSICTLGA 359
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEV-IWKPRTGQIGKPEKEYEIILKRTLQSICI 123
GD ++L + G + + + S V +P G G+ E + + +R L+ +
Sbjct: 360 LGDVQILDGL-GVEESKRFMHHYNFPSFSVGETRPMRGP-GRREIGHGALGERALEPVLP 417
Query: 124 LTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESG--YC 181
+ T ++ +V+ +G+ +I + A++DAG+P+K I +SG Y
Sbjct: 418 SEKDFPYTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHYT 477
Query: 182 IL 183
IL
Sbjct: 478 IL 479
>gi|206978199|ref|ZP_03239080.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
H3081.97]
gi|217961227|ref|YP_002339795.1| polynucleotide phosphorylase/polyadenylase [Bacillus cereus AH187]
gi|222097252|ref|YP_002531309.1| polynucleotide phosphorylase/polyadenylase [Bacillus cereus Q1]
gi|229140448|ref|ZP_04269003.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
BDRD-ST26]
gi|229197917|ref|ZP_04324633.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus m1293]
gi|375285729|ref|YP_005106168.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus NC7401]
gi|384181617|ref|YP_005567379.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis
serovar finitimus YBT-020]
gi|423353509|ref|ZP_17331136.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus IS075]
gi|423374396|ref|ZP_17351734.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus AND1407]
gi|423567298|ref|ZP_17543545.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus MSX-A12]
gi|423574587|ref|ZP_17550706.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus MSX-D12]
gi|423604566|ref|ZP_17580459.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD102]
gi|226702618|sp|B7HLE0.1|PNP_BACC7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|254782706|sp|B9IV96.1|PNP_BACCQ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|206743616|gb|EDZ55042.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
H3081.97]
gi|217066515|gb|ACJ80765.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus AH187]
gi|221241310|gb|ACM14020.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus Q1]
gi|228585635|gb|EEK43737.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus m1293]
gi|228643009|gb|EEK99285.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
BDRD-ST26]
gi|324327701|gb|ADY22961.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis
serovar finitimus YBT-020]
gi|358354256|dbj|BAL19428.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus NC7401]
gi|401089322|gb|EJP97493.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus IS075]
gi|401094308|gb|EJQ02390.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus AND1407]
gi|401212112|gb|EJR18858.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus MSX-D12]
gi|401214386|gb|EJR21116.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus MSX-A12]
gi|401245186|gb|EJR51544.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD102]
Length = 712
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 78/182 (42%), Gaps = 21/182 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +++RPLA IL R HGS +++G T C
Sbjct: 316 RPDGRKGDEIRPLASEVGILSRTHGSGLFTRG----------------QTQALSICTLGA 359
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEV-IWKPRTGQIGKPEKEYEIILKRTLQSICI 123
GD ++L + G + + + S V +P G G+ E + + +R L+ +
Sbjct: 360 LGDVQILDGL-GVEESKRFMHHYNFPSFSVGETRPMRGP-GRREIGHGALGERALEPVIP 417
Query: 124 LTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESG--YC 181
+ T ++ +V+ +G+ +I + A++DAG+P+K I +SG Y
Sbjct: 418 SEKDFPYTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHYT 477
Query: 182 IL 183
IL
Sbjct: 478 IL 479
>gi|163941544|ref|YP_001646428.1| polynucleotide phosphorylase/polyadenylase [Bacillus
weihenstephanensis KBAB4]
gi|229061410|ref|ZP_04198755.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH603]
gi|229134614|ref|ZP_04263424.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
BDRD-ST196]
gi|423452892|ref|ZP_17429745.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG5X1-1]
gi|423518497|ref|ZP_17494978.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus HuA2-4]
gi|423598882|ref|ZP_17574882.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD078]
gi|423669381|ref|ZP_17644410.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VDM034]
gi|423674440|ref|ZP_17649379.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VDM062]
gi|226702619|sp|A9VT44.1|PNP_BACWK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|163863741|gb|ABY44800.1| Polyribonucleotide nucleotidyltransferase [Bacillus
weihenstephanensis KBAB4]
gi|228648875|gb|EEL04900.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
BDRD-ST196]
gi|228717833|gb|EEL69481.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH603]
gi|401139451|gb|EJQ47013.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG5X1-1]
gi|401160705|gb|EJQ68080.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus HuA2-4]
gi|401237152|gb|EJR43609.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD078]
gi|401298508|gb|EJS04108.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VDM034]
gi|401309991|gb|EJS15324.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VDM062]
Length = 717
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 78/182 (42%), Gaps = 21/182 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +++RPLA IL R HGS +++G T C
Sbjct: 316 RPDGRKGDEIRPLASEVGILSRTHGSGLFTRG----------------QTQALSICTLGA 359
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEV-IWKPRTGQIGKPEKEYEIILKRTLQSICI 123
GD ++L + G + + + S V +P G G+ E + + +R L+ +
Sbjct: 360 LGDVQILDGL-GVEESKRFMHHYNFPSFSVGETRPMRGP-GRREIGHGALGERALEPVLP 417
Query: 124 LTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESG--YC 181
+ T ++ +V+ +G+ +I + A++DAG+P+K I +SG Y
Sbjct: 418 SEKDFPYTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHYT 477
Query: 182 IL 183
IL
Sbjct: 478 IL 479
>gi|423470021|ref|ZP_17446765.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus BAG6O-2]
gi|402437273|gb|EJV69297.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus BAG6O-2]
Length = 717
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 78/182 (42%), Gaps = 21/182 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +++RPLA IL R HGS +++G T C
Sbjct: 316 RPDGRKGDEIRPLASEVGILSRTHGSGLFTRG----------------QTQALSICTLGA 359
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEV-IWKPRTGQIGKPEKEYEIILKRTLQSICI 123
GD ++L + G + + + S V +P G G+ E + + +R L+ +
Sbjct: 360 LGDVQILDGL-GVEESKRFMHHYNFPSFSVGETRPMRGP-GRREIGHGALGERALEPVLP 417
Query: 124 LTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESG--YC 181
+ T ++ +V+ +G+ +I + A++DAG+P+K I +SG Y
Sbjct: 418 SEKDFPYTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHYT 477
Query: 182 IL 183
IL
Sbjct: 478 IL 479
>gi|423558630|ref|ZP_17534932.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus MC67]
gi|401191898|gb|EJQ98920.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus MC67]
Length = 717
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 78/182 (42%), Gaps = 21/182 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +++RPLA IL R HGS +++G T C
Sbjct: 316 RPDGRKGDEIRPLASEVGILSRTHGSGLFTRG----------------QTQALSICTLGA 359
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEV-IWKPRTGQIGKPEKEYEIILKRTLQSICI 123
GD ++L + G + + + S V +P G G+ E + + +R L+ +
Sbjct: 360 LGDVQILDGL-GVEESKRFMHHYNFPSFSVGETRPMRGP-GRREIGHGALGERALEPVLP 417
Query: 124 LTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESG--YC 181
+ T ++ +V+ +G+ +I + A++DAG+P+K I +SG Y
Sbjct: 418 SEKDFPYTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHYT 477
Query: 182 IL 183
IL
Sbjct: 478 IL 479
>gi|423483397|ref|ZP_17460087.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG6X1-2]
gi|401140948|gb|EJQ48503.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG6X1-2]
Length = 717
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 78/182 (42%), Gaps = 21/182 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +++RPLA IL R HGS +++G T C
Sbjct: 316 RPDGRKGDEIRPLASEVGILSRTHGSGLFTRG----------------QTQALSICTLGA 359
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEV-IWKPRTGQIGKPEKEYEIILKRTLQSICI 123
GD ++L + G + + + S V +P G G+ E + + +R L+ +
Sbjct: 360 LGDVQILDGL-GVEESKRFMHHYNFPSFSVGETRPMRGP-GRREIGHGALGERALEPVIP 417
Query: 124 LTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESG--YC 181
+ T ++ +V+ +G+ +I + A++DAG+P+K I +SG Y
Sbjct: 418 SEKDFPYTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHYT 477
Query: 182 IL 183
IL
Sbjct: 478 IL 479
>gi|423367850|ref|ZP_17345282.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD142]
gi|401082711|gb|EJP90976.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD142]
Length = 717
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 78/182 (42%), Gaps = 21/182 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +++RPLA IL R HGS +++G T C
Sbjct: 316 RPDGRKGDEIRPLASEVGILSRTHGSGLFTRG----------------QTQALSICTLGA 359
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEV-IWKPRTGQIGKPEKEYEIILKRTLQSICI 123
GD ++L + G + + + S V +P G G+ E + + +R L+ +
Sbjct: 360 LGDVQILDGL-GVEESKRFMHHYNFPSFSVGETRPMRGP-GRREIGHGALGERALEPVLP 417
Query: 124 LTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESG--YC 181
+ T ++ +V+ +G+ +I + A++DAG+P+K I +SG Y
Sbjct: 418 SEKDFPYTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHYT 477
Query: 182 IL 183
IL
Sbjct: 478 IL 479
>gi|325185608|emb|CCA20090.1| exosome complex exonuclease MTR3like protein putativ [Albugo
laibachii Nc14]
Length = 251
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 73/173 (42%), Gaps = 15/173 (8%)
Query: 62 WVGSGDTKVLAAVYGPK---AGTKKNENPEKASIEVIWKP-----RTGQIGKPEKEYEI- 112
+V TKV+ AVYGP+ G +K + +V + P RT G+ E ++
Sbjct: 51 YVELQGTKVICAVYGPRNNPRGRRKFHEGGQLICDVKFAPFAERNRTRNAGQDPDEIDLS 110
Query: 113 -ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAI 171
I+ + L L P S + ++ DG+ L AI A AL DA I M+ L A
Sbjct: 111 QIVTKALLPAIFLDKLPKCVVSCFVVILQSDGSELATAIMCASLALADAAIEMRDLVTA- 169
Query: 172 CCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHG 224
C ++D EE+ +G L F L L + + ++Q M H
Sbjct: 170 CNAGIVDDKLLVDLCTSEERMSQGNTMLAF----LPSLQKSTFVMQQGTMTHA 218
>gi|229086359|ref|ZP_04218536.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
Rock3-44]
gi|228696971|gb|EEL49779.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
Rock3-44]
Length = 717
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 78/182 (42%), Gaps = 21/182 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +++RPLA IL R HGS +++G T C
Sbjct: 316 RPDGRKSDEVRPLASEVGILSRTHGSGLFTRG----------------QTQALSICTLGA 359
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEV-IWKPRTGQIGKPEKEYEIILKRTLQSICI 123
GD ++L + G + + + S V +P G G+ E + + +R L+ +
Sbjct: 360 LGDVQILDGL-GVEESKRFMHHYNFPSFSVGETRPMRGP-GRREIGHGALGERALEPVIP 417
Query: 124 LTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESG--YC 181
+ T ++ +V+ +G+ +I + A++DAG+P+K I +SG Y
Sbjct: 418 SEQDFPYTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHYT 477
Query: 182 IL 183
IL
Sbjct: 478 IL 479
>gi|229168546|ref|ZP_04296269.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH621]
gi|423592197|ref|ZP_17568228.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD048]
gi|228614952|gb|EEK72054.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH621]
gi|401232330|gb|EJR38832.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD048]
Length = 717
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 78/182 (42%), Gaps = 21/182 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +++RPLA IL R HGS +++G T C
Sbjct: 316 RPDGRKGDEIRPLASEVGILSRTHGSGLFTRG----------------QTQALSICTLGA 359
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEV-IWKPRTGQIGKPEKEYEIILKRTLQSICI 123
GD ++L + G + + + S V +P G G+ E + + +R L+ +
Sbjct: 360 LGDVQILDGL-GVEESKRFMHHYNFPSFSVGETRPMRGP-GRREIGHGALGERALEPVLP 417
Query: 124 LTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESG--YC 181
+ T ++ +V+ +G+ +I + A++DAG+P+K I +SG Y
Sbjct: 418 SEKDFPYTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHYT 477
Query: 182 IL 183
IL
Sbjct: 478 IL 479
>gi|423612024|ref|ZP_17587885.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD107]
gi|401247031|gb|EJR53375.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD107]
Length = 717
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 78/182 (42%), Gaps = 21/182 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +++RPLA IL R HGS +++G T C
Sbjct: 316 RPDGRKGDEIRPLASEVGILSRTHGSGLFTRG----------------QTQALSICTLGA 359
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEV-IWKPRTGQIGKPEKEYEIILKRTLQSICI 123
GD ++L + G + + + S V +P G G+ E + + +R L+ +
Sbjct: 360 LGDVQILDGL-GVEESKRFMHHYNFPSFSVGETRPMRGP-GRREIGHGALGERALEPVIP 417
Query: 124 LTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESG--YC 181
+ T ++ +V+ +G+ +I + A++DAG+P+K I +SG Y
Sbjct: 418 SEKDFPYTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHYT 477
Query: 182 IL 183
IL
Sbjct: 478 IL 479
>gi|423522363|ref|ZP_17498836.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus HuA4-10]
gi|401175057|gb|EJQ82260.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus HuA4-10]
Length = 717
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 78/182 (42%), Gaps = 21/182 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +++RPLA IL R HGS +++G T C
Sbjct: 316 RPDGRKGDEIRPLASEVGILSRTHGSGLFTRG----------------QTQALSICTLGA 359
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEV-IWKPRTGQIGKPEKEYEIILKRTLQSICI 123
GD ++L + G + + + S V +P G G+ E + + +R L+ +
Sbjct: 360 LGDVQILDGL-GVEESKRFMHHYNFPSFSVGETRPMRGP-GRREIGHGALGERALEPVLP 417
Query: 124 LTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESG--YC 181
+ T ++ +V+ +G+ +I + A++DAG+P+K I +SG Y
Sbjct: 418 SEKDFPYTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHYT 477
Query: 182 IL 183
IL
Sbjct: 478 IL 479
>gi|363756298|ref|XP_003648365.1| hypothetical protein Ecym_8266 [Eremothecium cymbalariae
DBVPG#7215]
gi|356891565|gb|AET41548.1| Hypothetical protein Ecym_8266 [Eremothecium cymbalariae
DBVPG#7215]
Length = 246
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 64/154 (41%), Gaps = 12/154 (7%)
Query: 62 WVGSGDTKVLAAVYGPKAGTKKNE-NPEKASIEV---------IWKPRTGQIGKPEK-EY 110
++ G+ K++ V GP+ +++ N K ++ V I + + G + E
Sbjct: 41 YLEQGNNKIITLVKGPQEPNLRSQVNSNKGTLTVTVNITKFSDIERSQAGHRNERRTLEL 100
Query: 111 EIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVA 170
+ L RT + +L + T + I V+ DG LL IN AL+DAGI M
Sbjct: 101 QTALVRTFEKNIMLQLYSRTVIDIQIHVIQKDGGLLGAMINGITLALIDAGIAMYDYISG 160
Query: 171 ICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNS 204
+ ++ +LD LEE + V S
Sbjct: 161 VSVGLYDT-TPLLDLNALEENALSSVTLAVVGKS 193
>gi|228902310|ref|ZP_04066467.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
IBL 4222]
gi|434376910|ref|YP_006611554.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis
HD-789]
gi|228857279|gb|EEN01782.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
IBL 4222]
gi|401875467|gb|AFQ27634.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis
HD-789]
Length = 712
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 78/182 (42%), Gaps = 21/182 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +++RPLA IL R HGS +++G T C
Sbjct: 316 RPDGRKGDEIRPLASEVGILSRTHGSGLFTRG----------------QTQALSICTLGA 359
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEV-IWKPRTGQIGKPEKEYEIILKRTLQSICI 123
GD ++L + G + + + S V +P G G+ E + + +R L+ +
Sbjct: 360 LGDVQILDGL-GVEESKRFMHHYNFPSFSVGETRPMRGP-GRREIGHGALGERALEPVIP 417
Query: 124 LTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESG--YC 181
+ T ++ +V+ +G+ +I + A++DAG+P+K I +SG Y
Sbjct: 418 SEKDFPYTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHYT 477
Query: 182 IL 183
IL
Sbjct: 478 IL 479
>gi|229012990|ref|ZP_04170155.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides DSM
2048]
gi|423488982|ref|ZP_17465664.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus BtB2-4]
gi|423494707|ref|ZP_17471351.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus CER057]
gi|423498501|ref|ZP_17475118.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus CER074]
gi|423661354|ref|ZP_17636523.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VDM022]
gi|228748244|gb|EEL98104.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides DSM
2048]
gi|401150800|gb|EJQ58252.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus CER057]
gi|401160550|gb|EJQ67928.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus CER074]
gi|401301395|gb|EJS06984.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VDM022]
gi|402432230|gb|EJV64289.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus BtB2-4]
Length = 717
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 78/182 (42%), Gaps = 21/182 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +++RPLA IL R HGS +++G T C
Sbjct: 316 RPDGRKGDEIRPLASEVGILSRTHGSGLFTRG----------------QTQALSICTLGA 359
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEV-IWKPRTGQIGKPEKEYEIILKRTLQSICI 123
GD ++L + G + + + S V +P G G+ E + + +R L+ +
Sbjct: 360 LGDVQILDGL-GVEESKRFMHHYNFPSFSVGETRPMRGP-GRREIGHGALGERALEPVLP 417
Query: 124 LTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESG--YC 181
+ T ++ +V+ +G+ +I + A++DAG+P+K I +SG Y
Sbjct: 418 SEKDFPYTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHYT 477
Query: 182 IL 183
IL
Sbjct: 478 IL 479
>gi|229098276|ref|ZP_04229223.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
Rock3-29]
gi|229117294|ref|ZP_04246672.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus Rock1-3]
gi|423378354|ref|ZP_17355638.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus BAG1O-2]
gi|423441462|ref|ZP_17418368.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG4X2-1]
gi|423448312|ref|ZP_17425191.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus BAG5O-1]
gi|423464536|ref|ZP_17441304.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus BAG6O-1]
gi|423533878|ref|ZP_17510296.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus HuB2-9]
gi|423540853|ref|ZP_17517244.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus HuB4-10]
gi|423547091|ref|ZP_17523449.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus HuB5-5]
gi|423615932|ref|ZP_17591766.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD115]
gi|423623117|ref|ZP_17598895.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD148]
gi|228666194|gb|EEL21658.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus Rock1-3]
gi|228685174|gb|EEL39105.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
Rock3-29]
gi|401128906|gb|EJQ36589.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus BAG5O-1]
gi|401172041|gb|EJQ79262.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus HuB4-10]
gi|401178812|gb|EJQ85985.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus HuB5-5]
gi|401259890|gb|EJR66064.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD148]
gi|401260469|gb|EJR66642.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD115]
gi|401636620|gb|EJS54374.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus BAG1O-2]
gi|402418123|gb|EJV50423.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG4X2-1]
gi|402420803|gb|EJV53074.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus BAG6O-1]
gi|402464097|gb|EJV95797.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus HuB2-9]
Length = 712
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 78/182 (42%), Gaps = 21/182 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +++RPLA IL R HGS +++G T C
Sbjct: 316 RPDGRKGDEIRPLASEVGILSRTHGSGLFTRG----------------QTQALSICTLGA 359
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEV-IWKPRTGQIGKPEKEYEIILKRTLQSICI 123
GD ++L + G + + + S V +P G G+ E + + +R L+ +
Sbjct: 360 LGDVQILDGL-GVEESKRFMHHYNFPSFSVGETRPMRGP-GRREIGHGALGERALEPVIP 417
Query: 124 LTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESG--YC 181
+ T ++ +V+ +G+ +I + A++DAG+P+K I +SG Y
Sbjct: 418 SEKDFPYTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHYT 477
Query: 182 IL 183
IL
Sbjct: 478 IL 479
>gi|390371124|dbj|GAB65005.1| hypothetical protein PCYB_042070 [Plasmodium cynomolgi strain B]
Length = 268
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 71/145 (48%), Gaps = 11/145 (7%)
Query: 60 CYWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRT----GQIGKPEKEYEIILK 115
C++ G+TK+LA +YGPK +K N +K + + K G + ++ + +L
Sbjct: 58 CFY-SLGNTKILALIYGPKPDSK-NATYDKGKVFLEIKSLNMNDDGANDESDENIKNLLI 115
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAV-----A 170
+ S+ +L P + ++ ++ +DG L + AL++A I M+ + V +
Sbjct: 116 ECVSSVILLDQYPQCSINIKCLIIQNDGGCLSATLTCISLALINAQIKMRDIIVSVNVNS 175
Query: 171 ICCCSAESGYCILDPTKLEEQKMKG 195
I C + + + ++D LEE+ +G
Sbjct: 176 IICPNTKRVFHLVDVDSLEEKYYEG 200
>gi|407706267|ref|YP_006829852.1| cell division protein FtsL [Bacillus thuringiensis MC28]
gi|407383952|gb|AFU14453.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
MC28]
Length = 712
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 78/182 (42%), Gaps = 21/182 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +++RPLA IL R HGS +++G T C
Sbjct: 316 RPDGRKGDEIRPLASEVGILSRTHGSGLFTRG----------------QTQALSICTLGA 359
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEV-IWKPRTGQIGKPEKEYEIILKRTLQSICI 123
GD ++L + G + + + S V +P G G+ E + + +R L+ +
Sbjct: 360 LGDVQILDGL-GVEESKRFMHHYNFPSFSVGETRPMRGP-GRREIGHGALGERALEPVIP 417
Query: 124 LTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESG--YC 181
+ T ++ +V+ +G+ +I + A++DAG+P+K I +SG Y
Sbjct: 418 SEKDFPYTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHYT 477
Query: 182 IL 183
IL
Sbjct: 478 IL 479
>gi|374856299|dbj|BAL59153.1| polyribonucleotide nucleotidyltransferase [uncultured candidate
division OP1 bacterium]
Length = 788
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 62/273 (22%), Positives = 112/273 (41%), Gaps = 51/273 (18%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR ++LRP++C +L R HGSA +++G +T L
Sbjct: 320 RMDGRRADELRPISCEVGLLPRVHGSALFTRG----ETQSLGTVTL-----------GTS 364
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKP----RTGQIGKPEKEYEI----ILKR 116
S D +++ + E E+ + + P TG++G P + EI + K
Sbjct: 365 SLDEQIIDRML--------EEGRERFMLHYNFPPYSVGETGRMGPPGRR-EIGHGNLAKN 415
Query: 117 TLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKH--LAVAICCC 174
L+++ V+ +++ +G+ + A+ AL+DAG+P+K +A+
Sbjct: 416 ALKAVIPSEDEFPYIIRVVSEILESNGSSSMATVCASSLALMDAGVPIKKPVAGIAMGLL 475
Query: 175 SAESGYCIL-DPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGA 233
+ S Y IL D E+ F + F L+ +G + Q + HGI +
Sbjct: 476 THNSDYMILTDLAGYEDH----FGDMDFK---LAGTKDGLTGFQMDTKIHGITLQIAKET 528
Query: 234 MSVDDYFHCLERGRAASAKLSDFLRRSLQSKLP 266
M + R A ++ D + R+L + P
Sbjct: 529 MM---------QARKARLQILDIMNRTLPAPRP 552
>gi|229104369|ref|ZP_04235038.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
Rock3-28]
gi|228679067|gb|EEL33275.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
Rock3-28]
Length = 712
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 78/182 (42%), Gaps = 21/182 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +++RPLA IL R HGS +++G T C
Sbjct: 316 RPDGRKGDEIRPLASEVGILSRTHGSGLFTRG----------------QTQALSICTLGA 359
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEV-IWKPRTGQIGKPEKEYEIILKRTLQSICI 123
GD ++L + G + + + S V +P G G+ E + + +R L+ +
Sbjct: 360 LGDVQILDGL-GVEESKRFMHHYNFPSFSVGETRPMRGP-GRREIGHGALGERALEPVIP 417
Query: 124 LTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESG--YC 181
+ T ++ +V+ +G+ +I + A++DAG+P+K I +SG Y
Sbjct: 418 SEKDFPYTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHYT 477
Query: 182 IL 183
IL
Sbjct: 478 IL 479
>gi|224125980|ref|XP_002319726.1| predicted protein [Populus trichocarpa]
gi|222858102|gb|EEE95649.1| predicted protein [Populus trichocarpa]
Length = 853
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 74/175 (42%), Gaps = 30/175 (17%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R+DGR P +RP+ SC +L RAHGSA +++G +T L
Sbjct: 376 RSDGRTPEGIRPIDSSCGLLPRAHGSALFTRG----ETQSLAVVTL-------------- 417
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKP----RTGQIGKPEKE---YEIILKRT 117
GD ++ V E ++ ++ + P G+IG P + + ++ +R
Sbjct: 418 -GDKQMAQRV----DNLVDEEEFKRFYLQYSFPPSCVGEVGRIGAPSRREIGHGMLAERA 472
Query: 118 LQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAIC 172
L+ I + T V + +G+ ++ C AL DAG+P+K + I
Sbjct: 473 LEPILPSENDFPYTVRVESTITESNGSSSMASVCGGCLALQDAGVPVKCMIAGIA 527
>gi|229162743|ref|ZP_04290700.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus R309803]
gi|228620625|gb|EEK77494.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus R309803]
Length = 712
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 78/182 (42%), Gaps = 21/182 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +++RPLA IL R HGS +++G T C
Sbjct: 316 RPDGRKGDEIRPLASEVGILSRTHGSGLFTRG----------------QTQALSICTLGA 359
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEV-IWKPRTGQIGKPEKEYEIILKRTLQSICI 123
GD ++L + G + + + S V +P G G+ E + + +R L+ +
Sbjct: 360 LGDVQILDGL-GVEESKRFMHHYNFPSFSVGETRPMRGP-GRREIGHGALGERALEPVIP 417
Query: 124 LTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESG--YC 181
+ T ++ +V+ +G+ +I + A++DAG+P+K I +SG Y
Sbjct: 418 SEKDFPYTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHYT 477
Query: 182 IL 183
IL
Sbjct: 478 IL 479
>gi|218898959|ref|YP_002447370.1| polynucleotide phosphorylase/polyadenylase [Bacillus cereus G9842]
gi|228966752|ref|ZP_04127796.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar sotto str. T04001]
gi|402558867|ref|YP_006601591.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis
HD-771]
gi|423561787|ref|ZP_17538063.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus MSX-A1]
gi|226702616|sp|B7IUG5.1|PNP_BACC2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|218542651|gb|ACK95045.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus G9842]
gi|228792851|gb|EEM40409.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar sotto str. T04001]
gi|401202044|gb|EJR08909.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus MSX-A1]
gi|401787519|gb|AFQ13558.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis
HD-771]
Length = 712
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 78/182 (42%), Gaps = 21/182 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +++RPLA IL R HGS +++G T C
Sbjct: 316 RPDGRKGDEIRPLASEVGILSRTHGSGLFTRG----------------QTQALSICTLGA 359
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEV-IWKPRTGQIGKPEKEYEIILKRTLQSICI 123
GD ++L + G + + + S V +P G G+ E + + +R L+ +
Sbjct: 360 LGDVQILDGL-GVEESKRFMHHYNFPSFSVGETRPMRGP-GRREIGHGALGERALEPVIP 417
Query: 124 LTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESG--YC 181
+ T ++ +V+ +G+ +I + A++DAG+P+K I +SG Y
Sbjct: 418 SEKDFPYTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHYT 477
Query: 182 IL 183
IL
Sbjct: 478 IL 479
>gi|228909631|ref|ZP_04073454.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
IBL 200]
gi|228849920|gb|EEM94751.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
IBL 200]
Length = 712
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 78/182 (42%), Gaps = 21/182 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +++RPLA IL R HGS +++G T C
Sbjct: 316 RPDGRKGDEIRPLASEVGILSRTHGSGLFTRG----------------QTQALSICTLGA 359
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEV-IWKPRTGQIGKPEKEYEIILKRTLQSICI 123
GD ++L + G + + + S V +P G G+ E + + +R L+ +
Sbjct: 360 LGDVQILDGL-GVEESKRFMHHYNFPSFSVGETRPMRGP-GRREIGHGALGERALEPVIP 417
Query: 124 LTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESG--YC 181
+ T ++ +V+ +G+ +I + A++DAG+P+K I +SG Y
Sbjct: 418 SEKDFPYTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHYT 477
Query: 182 IL 183
IL
Sbjct: 478 IL 479
>gi|228940895|ref|ZP_04103454.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228973824|ref|ZP_04134400.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228980413|ref|ZP_04140723.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
Bt407]
gi|384187864|ref|YP_005573760.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis
serovar chinensis CT-43]
gi|410676180|ref|YP_006928551.1| polyribonucleotide nucleotidyltransferase Pnp [Bacillus
thuringiensis Bt407]
gi|423385310|ref|ZP_17362566.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG1X1-2]
gi|423528332|ref|ZP_17504777.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus HuB1-1]
gi|452200244|ref|YP_007480325.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar thuringiensis str. IS5056]
gi|228779233|gb|EEM27490.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
Bt407]
gi|228785849|gb|EEM33852.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228818731|gb|EEM64797.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|326941573|gb|AEA17469.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis
serovar chinensis CT-43]
gi|401635366|gb|EJS53121.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG1X1-2]
gi|402451995|gb|EJV83814.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus HuB1-1]
gi|409175309|gb|AFV19614.1| polyribonucleotide nucleotidyltransferase Pnp [Bacillus
thuringiensis Bt407]
gi|452105637|gb|AGG02577.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar thuringiensis str. IS5056]
Length = 712
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 78/182 (42%), Gaps = 21/182 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +++RPLA IL R HGS +++G T C
Sbjct: 316 RPDGRKGDEIRPLASEVGILSRTHGSGLFTRG----------------QTQALSICTLGA 359
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEV-IWKPRTGQIGKPEKEYEIILKRTLQSICI 123
GD ++L + G + + + S V +P G G+ E + + +R L+ +
Sbjct: 360 LGDVQILDGL-GVEESKRFMHHYNFPSFSVGETRPMRGP-GRREIGHGALGERALEPVIP 417
Query: 124 LTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESG--YC 181
+ T ++ +V+ +G+ +I + A++DAG+P+K I +SG Y
Sbjct: 418 SEKDFPYTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHYT 477
Query: 182 IL 183
IL
Sbjct: 478 IL 479
>gi|30021896|ref|NP_833527.1| polynucleotide phosphorylase [Bacillus cereus ATCC 14579]
gi|81433861|sp|Q819Z1.1|PNP_BACCR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|29897452|gb|AAP10728.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus ATCC
14579]
Length = 712
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 78/182 (42%), Gaps = 21/182 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +++RPLA IL R HGS +++G T C
Sbjct: 316 RPDGRKGDEIRPLASEVGILSRTHGSGLFTRG----------------QTQALSICTLGA 359
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEV-IWKPRTGQIGKPEKEYEIILKRTLQSICI 123
GD ++L + G + + + S V +P G G+ E + I +R L+ +
Sbjct: 360 LGDVQILDGL-GVEESKRFMHHYNFPSFSVGETRPMRGP-GRREIGHGAIGERALEPVIP 417
Query: 124 LTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESG--YC 181
+ T ++ +V+ +G+ +I + A++DAG+P+K I ++G Y
Sbjct: 418 SEKDFPYTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHYT 477
Query: 182 IL 183
IL
Sbjct: 478 IL 479
>gi|423395894|ref|ZP_17373095.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG2X1-1]
gi|423406770|ref|ZP_17383919.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG2X1-3]
gi|401653636|gb|EJS71180.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG2X1-1]
gi|401660060|gb|EJS77543.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG2X1-3]
Length = 712
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 78/182 (42%), Gaps = 21/182 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +++RPLA IL R HGS +++G T C
Sbjct: 316 RPDGRKGDEIRPLASEVGILSRTHGSGLFTRG----------------QTQALSICTLGA 359
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEV-IWKPRTGQIGKPEKEYEIILKRTLQSICI 123
GD ++L + G + + + S V +P G G+ E + + +R L+ +
Sbjct: 360 LGDVQILDGL-GVEESKRFMHHYNFPSFSVGETRPMRGP-GRREIGHGALGERALEPVIP 417
Query: 124 LTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESG--YC 181
+ T ++ +V+ +G+ +I + A++DAG+P+K I +SG Y
Sbjct: 418 SEKDFPYTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHYT 477
Query: 182 IL 183
IL
Sbjct: 478 IL 479
>gi|423359157|ref|ZP_17336660.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD022]
gi|401085029|gb|EJP93275.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD022]
Length = 712
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 78/182 (42%), Gaps = 21/182 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +++RPLA IL R HGS +++G T C
Sbjct: 316 RPDGRKGDEIRPLASEIGILSRTHGSGLFTRG----------------QTQALSICTLGA 359
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEV-IWKPRTGQIGKPEKEYEIILKRTLQSICI 123
GD ++L + G + + + S V +P G G+ E + + +R L+ +
Sbjct: 360 LGDVQILDGL-GVEESKRFMHHYNFPSFSVGETRPMRGP-GRREIGHGALGERALEPVIP 417
Query: 124 LTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESG--YC 181
+ T ++ +V+ +G+ +I + A++DAG+P+K I +SG Y
Sbjct: 418 SEKDFPYTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHYT 477
Query: 182 IL 183
IL
Sbjct: 478 IL 479
>gi|116181272|ref|XP_001220485.1| hypothetical protein CHGG_01264 [Chaetomium globosum CBS 148.51]
gi|88185561|gb|EAQ93029.1| hypothetical protein CHGG_01264 [Chaetomium globosum CBS 148.51]
Length = 277
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 41/85 (48%), Gaps = 9/85 (10%)
Query: 128 PNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYC------ 181
P++ +V + V+ DG+LL INAA A VDAGIPM VA C + S Y
Sbjct: 130 PHSQINVSLHVLSQDGSLLAALINAATLACVDAGIPMTDY-VAACTAGSTSTYAANDEGA 188
Query: 182 --ILDPTKLEEQKMKGFAYLVFPNS 204
+LD EEQ++ G S
Sbjct: 189 DPLLDLNHQEEQELPGLTVATLGES 213
>gi|153954062|ref|YP_001394827.1| polynucleotide phosphorylase/polyadenylase [Clostridium kluyveri
DSM 555]
gi|189037304|sp|A5N848.1|PNP_CLOK5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|257096734|sp|B9E1K8.2|PNP_CLOK1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|146346943|gb|EDK33479.1| Pnp [Clostridium kluyveri DSM 555]
Length = 708
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 77/171 (45%), Gaps = 23/171 (13%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +++RP++C L RAHG+ +++G + T +G
Sbjct: 312 RVDGREFDEVRPISCEVGFLPRAHGTGLFTRGLTQVMT-----------------VVTLG 354
Query: 65 S-GDTKVLAAV--YGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSI 121
S GD ++L V K P ++ EV +P G G+ E + + ++ L+ +
Sbjct: 355 SLGDVQILDGVGLEDSKRYMHHYNFPSYSTGEV--RPLRGP-GRREIGHGALAEKALEPL 411
Query: 122 CILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAIC 172
+ T ++ +V+ +G+ +I + AL+DAG+P+K A I
Sbjct: 412 IPMEEQFPYTIRLVSEVLSSNGSTSQASICGSTLALLDAGVPIKRPAAGIA 462
>gi|332799230|ref|YP_004460729.1| polyribonucleotide nucleotidyltransferase [Tepidanaerobacter
acetatoxydans Re1]
gi|438002358|ref|YP_007272101.1| Polyribonucleotide nucleotidyltransferase [Tepidanaerobacter
acetatoxydans Re1]
gi|332696965|gb|AEE91422.1| Polyribonucleotide nucleotidyltransferase [Tepidanaerobacter
acetatoxydans Re1]
gi|432179152|emb|CCP26125.1| Polyribonucleotide nucleotidyltransferase [Tepidanaerobacter
acetatoxydans Re1]
Length = 700
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQG 36
R DGR PNQ+RP++C IL R HGS +++G
Sbjct: 311 RPDGRTPNQIRPISCEVGILPRTHGSGLFTRG 342
>gi|219854675|ref|YP_002471797.1| hypothetical protein CKR_1332 [Clostridium kluyveri NBRC 12016]
gi|219568399|dbj|BAH06383.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 715
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 77/171 (45%), Gaps = 23/171 (13%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +++RP++C L RAHG+ +++G + T +G
Sbjct: 319 RVDGREFDEVRPISCEVGFLPRAHGTGLFTRGLTQVMT-----------------VVTLG 361
Query: 65 S-GDTKVLAAV--YGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSI 121
S GD ++L V K P ++ EV +P G G+ E + + ++ L+ +
Sbjct: 362 SLGDVQILDGVGLEDSKRYMHHYNFPSYSTGEV--RPLRGP-GRREIGHGALAEKALEPL 418
Query: 122 CILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAIC 172
+ T ++ +V+ +G+ +I + AL+DAG+P+K A I
Sbjct: 419 IPMEEQFPYTIRLVSEVLSSNGSTSQASICGSTLALLDAGVPIKRPAAGIA 469
>gi|350585233|ref|XP_003481908.1| PREDICTED: exosome complex component RRP46 [Sus scrofa]
Length = 97
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 17/109 (15%)
Query: 156 ALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSL 215
ALVDAG+PM+ L + C G +LDPT +E++ + A L F
Sbjct: 2 ALVDAGVPMRALFCGVTCALDSDGTFMLDPTAKQEKEAR--AVLTFAL------------ 47
Query: 216 VQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSK 264
+ +E ++ S T G S + CL + AS + F R SLQ +
Sbjct: 48 ---DSVERKLLMSTTKGLYSDAELQQCLAAAQTASQHVFRFYRESLQRR 93
>gi|448517135|ref|XP_003867718.1| hypothetical protein CORT_0B05720 [Candida orthopsilosis Co 90-125]
gi|380352057|emb|CCG22281.1| hypothetical protein CORT_0B05720 [Candida orthopsilosis]
Length = 222
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 57/125 (45%), Gaps = 7/125 (5%)
Query: 68 TKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTIN 127
TK L +V GP + E P +AS+E+I +P G EK E L+ LQS+ I
Sbjct: 24 TKCLVSVSGPIEPKVRQELPTQASLEIIVRPAHGLSTTREKLLEDKLRSLLQSLIIRYKY 83
Query: 128 PNTTTSVIIQ-VVHDDGALLPC-----AINAACAALVDAGIPMKHLAVAICCCSAESGYC 181
P +++Q +V D+ C AIN AL+DA + + + C G
Sbjct: 84 PRQLIQIVVQFLVVDEEPEYTCNELNAAINGCYFALIDADLALYSSFASTNVC-LNLGNL 142
Query: 182 ILDPT 186
I DPT
Sbjct: 143 IKDPT 147
>gi|326477645|gb|EGE01655.1| exosome complex endonuclease 1/ribosomal RNA processing protein
[Trichophyton equinum CBS 127.97]
Length = 302
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 59/131 (45%), Gaps = 21/131 (16%)
Query: 62 WVGSGDTKVLAAVYGPKAGTKKNENPEKAS--IEVIW------------KPRTGQIG--- 104
++ G+T VL V+GP G K++E A I V+ K TG G
Sbjct: 42 YLSMGNTAVLCTVHGPAEG-KRSETAGAAGAVINVVVNLAGFANVDRKKKSTTGSGGGDR 100
Query: 105 KPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPM 164
+ E L+ Q + P +T SV + V+ DG+L +NA ALVDAGIPM
Sbjct: 101 QATTELANSLRDAFQPHIHAHLYPRSTISVHVSVLSSDGSLFAACLNACTLALVDAGIPM 160
Query: 165 KHLAVAICCCS 175
L +C C+
Sbjct: 161 PGL---LCACT 168
>gi|308481795|ref|XP_003103102.1| hypothetical protein CRE_25738 [Caenorhabditis remanei]
gi|308260478|gb|EFP04431.1| hypothetical protein CRE_25738 [Caenorhabditis remanei]
Length = 256
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 71/204 (34%), Gaps = 19/204 (9%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFC 60
ME D + R+ RPL C + GS G + + Y +K Y
Sbjct: 23 METDDVEKRSATAFRPLCVKCGVFGAQDGSGYAEFGNTRV-LAQMYEKKHLTSVNKLYNF 81
Query: 61 YWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQS 120
GP+ K E K +I + ++ E L +L +
Sbjct: 82 ST-------------GPEGDGKWEEAHAKVTITLKGVENETKVA----ELRADLTSSLSA 124
Query: 121 ICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGY 180
+ + P + + V+ DDG +L AI A AL +GI L + +G
Sbjct: 125 VIFINKYPGKVIDIEVTVLSDDGGVLSTAITAVTLALAHSGIEHMGLTASAHVALKSNGD 184
Query: 181 CILDPTKLE-EQKMKGFAYLVFPN 203
I DP+ E E + G + PN
Sbjct: 185 YITDPSTSEAEDAIGGVTFAFVPN 208
>gi|260785852|ref|XP_002587974.1| hypothetical protein BRAFLDRAFT_124886 [Branchiostoma floridae]
gi|229273129|gb|EEN43985.1| hypothetical protein BRAFLDRAFT_124886 [Branchiostoma floridae]
Length = 1444
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 68/142 (47%), Gaps = 9/142 (6%)
Query: 62 WVGSGDTKVLAAVYGPKAGTKKNENPEKASI--EVIW------KPRTGQIGKPEKEYEII 113
++ G TKV+AAVYGP+ ++ E K + E+ + + R EK+ +I
Sbjct: 1221 YIEMGQTKVIAAVYGPREIARREEFTMKGRLCCELKFATFACRRRRQHIQDNQEKDGALI 1280
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
+ + L+ L P + V I V+ DDG+ L AI A A L DAG+ M + VA C
Sbjct: 1281 VLQALEPAVCLDRFPKSQVDVYITVLQDDGSALAAAITCAAAGLADAGV-MMYDIVAGCS 1339
Query: 174 CSAESGYCILDPTKLEEQKMKG 195
+LDP+ EE +G
Sbjct: 1340 VRQCGERQLLDPSVGEELSQEG 1361
>gi|327296349|ref|XP_003232869.1| exosome complex endonuclease 1/ribosomal RNA processing protein
[Trichophyton rubrum CBS 118892]
gi|326465180|gb|EGD90633.1| exosome complex endonuclease 1/ribosomal RNA processing protein
[Trichophyton rubrum CBS 118892]
Length = 302
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 60/131 (45%), Gaps = 21/131 (16%)
Query: 62 WVGSGDTKVLAAVYGPKAGTKKNENPEKAS--IEVIW------------KPRTGQIG--- 104
++ G+T VL V+GP G K++E A I V+ K TG G
Sbjct: 42 YLSMGNTAVLCTVHGPAEG-KRSETAGAAGAVINVVVNLAGFANVDRKKKSATGSGGGDR 100
Query: 105 KPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPM 164
+ E L+ Q + P +T +V + V+ DG+LL +NA ALVDAGIPM
Sbjct: 101 QATTELANSLRDAFQPHIHAHLYPRSTITVHVSVLSSDGSLLAACLNACTLALVDAGIPM 160
Query: 165 KHLAVAICCCS 175
L +C C+
Sbjct: 161 PGL---LCACT 168
>gi|384227802|ref|YP_005619547.1| polynucleotide phosphorylase/polyadenylase [Buchnera aphidicola
str. Ak (Acyrthosiphon kondoi)]
gi|345538742|gb|AEO08719.1| polynucleotide phosphorylase/polyadenylase [Buchnera aphidicola
str. Ak (Acyrthosiphon kondoi)]
Length = 707
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 52/233 (22%), Positives = 88/233 (37%), Gaps = 25/233 (10%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR + +R L IL R HGSA +++G +T L +G
Sbjct: 315 RIDGREKDMIRALDIRTGILPRTHGSALFTRG----ETQSLVSVTLGTSRDAQNLDELLG 370
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICIL 124
L P I ++ P+ +IG + KR+L ++
Sbjct: 371 DRIDNFLFHYNFPPYSV--------GEIGMVGSPKRREIGHGR-----LAKRSLLAVMPT 417
Query: 125 TINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESG--YCI 182
N T V+ ++ +G+ ++ A AL+DAG+P+K I + G Y +
Sbjct: 418 LDNFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPIKSAVAGIAMGLVKEGNKYVL 477
Query: 183 LDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMS 235
L +E + + V S EG + +Q + GI + H A++
Sbjct: 478 LSDILGDEDHLGDMDFKV------SGTEEGITALQMDMKIEGITNEIIHAALN 524
>gi|237842251|ref|XP_002370423.1| 3' exoribonuclease family, domain 1 containing protein [Toxoplasma
gondii ME49]
gi|211968087|gb|EEB03283.1| 3' exoribonuclease family, domain 1 containing protein [Toxoplasma
gondii ME49]
gi|221502879|gb|EEE28593.1| conserved hypothetical protein [Toxoplasma gondii VEG]
Length = 392
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 79/210 (37%), Gaps = 50/210 (23%)
Query: 5 RADGR-NPNQLRPLACSCSILHRAHGSASWSQGF-----------------RFIQTSHFY 46
R DGR + +LRPL AHGSA SQG ++ + F+
Sbjct: 28 RPDGREHARELRPLTVKLGFARTAHGSARVSQGLTSVIALVVGPVEAPPGPKYSSSGCFF 87
Query: 47 HFNLFVFT-----SKCYFCYWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTG 101
H L S +G D+ V + G GT++ G
Sbjct: 88 HVILKPLAGPPMLSAARTAAAIGGCDSAVAS---GTARGTRRGR---------------G 129
Query: 102 QIGKP--EKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVD 159
G E+ E L+ LQ + + P + + ++ DDG INAA AAL+D
Sbjct: 130 AFGSESFERWMECQLQTLLQHMVLPGEYPRCLVQLTLMILQDDGGAESACINAALAALID 189
Query: 160 AGIPMKHLA-------VAICCCSAESGYCI 182
AG+ ++ A +A C +E+ C+
Sbjct: 190 AGVSLRFRAWATNLVRLARSACISETKTCL 219
>gi|152976173|ref|YP_001375690.1| polynucleotide phosphorylase/polyadenylase [Bacillus cytotoxicus
NVH 391-98]
gi|187470935|sp|A7GRD7.1|PNP_BACCN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|152024925|gb|ABS22695.1| Polyribonucleotide nucleotidyltransferase [Bacillus cytotoxicus NVH
391-98]
Length = 710
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 78/182 (42%), Gaps = 21/182 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +++RPLA IL R HGS +++G T C
Sbjct: 316 RPDGRKSDEIRPLASEVGILPRTHGSGLFTRG----------------QTQALSICTLGA 359
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEV-IWKPRTGQIGKPEKEYEIILKRTLQSICI 123
GD ++L + G + + + S V +P G G+ E + + +R L+ +
Sbjct: 360 LGDVQILDGL-GVEESKRFMHHYNFPSFSVGETRPMRGP-GRREIGHGALGERALEPVIP 417
Query: 124 LTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESG--YC 181
+ T ++ +V+ +G+ +I + A++DAG+P+K I +SG Y
Sbjct: 418 SEKDFPYTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHYT 477
Query: 182 IL 183
IL
Sbjct: 478 IL 479
>gi|367053159|ref|XP_003656958.1| hypothetical protein THITE_2055676 [Thielavia terrestris NRRL 8126]
gi|347004223|gb|AEO70622.1| hypothetical protein THITE_2055676 [Thielavia terrestris NRRL 8126]
Length = 264
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 40/77 (51%), Gaps = 9/77 (11%)
Query: 128 PNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYC------ 181
P++ +V + V+ DG+LL INAA A VDAGIPM VA C + S Y
Sbjct: 117 PHSQITVSLHVLSQDGSLLAALINAATLACVDAGIPMTDY-VAACTAGSTSTYAANDEGA 175
Query: 182 --ILDPTKLEEQKMKGF 196
+LD EEQ++ G
Sbjct: 176 DPLLDLNHQEEQELPGL 192
>gi|221482227|gb|EEE20582.1| conserved hypothetical protein [Toxoplasma gondii GT1]
Length = 392
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 79/210 (37%), Gaps = 50/210 (23%)
Query: 5 RADGR-NPNQLRPLACSCSILHRAHGSASWSQGF-----------------RFIQTSHFY 46
R DGR + +LRPL AHGSA SQG ++ + F+
Sbjct: 28 RPDGREHARELRPLTVKLGFARTAHGSARVSQGLTSVIALVVGPVEAPPGPKYSSSGCFF 87
Query: 47 HFNLFVFT-----SKCYFCYWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTG 101
H L S +G D+ V + G GT++ G
Sbjct: 88 HVILKPLAGPPMLSAARTAAAIGGCDSAVAS---GTARGTRRGR---------------G 129
Query: 102 QIGKP--EKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVD 159
G E+ E L+ LQ + + P + + ++ DDG INAA AAL+D
Sbjct: 130 AFGSESFERWMECQLQTLLQHMVLPGEYPRCLVQLTLMILQDDGGAESACINAALAALID 189
Query: 160 AGIPMKHLA-------VAICCCSAESGYCI 182
AG+ ++ A +A C +E+ C+
Sbjct: 190 AGVSLRFRAWATNLVRLARSACISETKTCL 219
>gi|70932569|ref|XP_737786.1| exosome complex exonuclease rrp41 [Plasmodium chabaudi chabaudi]
gi|56513462|emb|CAH83474.1| exosome complex exonuclease rrp41, putative [Plasmodium chabaudi
chabaudi]
Length = 227
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 72/150 (48%), Gaps = 14/150 (9%)
Query: 49 NLFVFTSKCYFCYWVGSGDTKVLAAVYGPKAGTKKNENPEKASI--EVIWKPRTGQIGKP 106
N +FT F ++ G+TK+L+ + GP T+ ++ +K SI +V P +
Sbjct: 31 NQNIFTDADGFAFY-EIGNTKILSYIQGP---TELKKSDDKCSIKCDVFLSPFNVYDKRK 86
Query: 107 EK-------EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVD 159
+K E ++ ++I +L + N+ ++ + ++ DG + AIN AL+D
Sbjct: 87 KKTKDNITNEISAYIRNICENIILLDLYKNSEINIFLYIIERDGGIKHAAINTCILALID 146
Query: 160 AGIPMKHLAVAICCCSAESGYCILDPTKLE 189
AGI +K+ ++ C I+D +LE
Sbjct: 147 AGIAIKYF-ISACSVLYLQNQIIVDGNQLE 175
>gi|71410043|ref|XP_807336.1| exosome-associated protein 4 [Trypanosoma cruzi strain CL Brener]
gi|70871314|gb|EAN85485.1| exosome-associated protein 4, putative [Trypanosoma cruzi]
Length = 229
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 69/171 (40%), Gaps = 12/171 (7%)
Query: 45 FYHFNLFVFTSKCYFCYWVGSGDTKVLAAVYGPKAGTKKNENPE-KASIEVIWKPRTGQ- 102
+ H L V +C+ V G+T+V+ AV+ P+ + + + V G
Sbjct: 15 YPHIALDVL-GQCHSSACVELGNTRVICAVHHPQQLVDEYRGSRGRVACTVRRSASAGSH 73
Query: 103 --------IGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAAC 154
+ PEK+ + L+ + + IL P V+++++ +DG + +
Sbjct: 74 SAGSAQPSVVTPEKDMSLALEGVAEEVVILEKIPQLLVEVVVEILAEDGGVWDAVATSMS 133
Query: 155 AALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYL-VFPNS 204
AALV G M L A G +LDP EE + A + V NS
Sbjct: 134 AALVSGGFEMHDLFSACGSALLSDGAVVLDPDAAEESNAQASALVCVMLNS 184
>gi|222100220|ref|YP_002534788.1| polynucleotide phosphorylase/polyadenylase [Thermotoga neapolitana
DSM 4359]
gi|254782743|sp|B9K8Y9.1|PNP_THENN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|221572610|gb|ACM23422.1| Polyribonucleotide nucleotidyltransferase [Thermotoga neapolitana
DSM 4359]
Length = 707
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 78/181 (43%), Gaps = 19/181 (10%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
RADGR PN++RP++C + R HGSA +++G +T L +
Sbjct: 317 RADGRKPNEIRPISCEVGLFPRTHGSALFTRG----ETQSLGIVTLGAPMDVQIIDTLLE 372
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICIL 124
G + + P T ++ + P +IG + + +R L+++
Sbjct: 373 EGVKRFMLHYNFPPFCT--------GEVKPLRGPSRREIG-----HGHLAERALKNMLPP 419
Query: 125 TINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPM-KHLA-VAICCCSAESGYCI 182
T V+ +++ +G+ + + AL+DAG+P+ KH+A +A+ E I
Sbjct: 420 EEEFPYTIRVVSEILESNGSSSMATVCSGSLALMDAGVPIRKHVAGIAMGLILEEDAEVI 479
Query: 183 L 183
L
Sbjct: 480 L 480
>gi|119898394|ref|YP_933607.1| polynucleotide phosphorylase/polyadenylase [Azoarcus sp. BH72]
gi|187470932|sp|A1K7B5.1|PNP_AZOSB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|119670807|emb|CAL94720.1| polyribonucleotide nucleotidyltransferase [Azoarcus sp. BH72]
Length = 699
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 60/277 (21%), Positives = 117/277 (42%), Gaps = 47/277 (16%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR+ +RP+ +L R HGSA +++G ++ +G
Sbjct: 316 RIDGRDTRTVRPIDIRVGVLPRTHGSALFTRG-----------------ETQALVVATLG 358
Query: 65 SG-DTKVLAAVYGPKAGTKKNENPEKASIEVIWKP-RTGQIGK--PEKEYEI----ILKR 116
+G D +++ A+ G E E+ + + P TG+ G+ K EI + KR
Sbjct: 359 TGRDEQIIDAIAG--------EYKERFMLHYNFPPFSTGETGRFGVTKRREIGHGRLAKR 410
Query: 117 TLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMK-HLA-VAICCC 174
L ++ + + T V+ ++ +G+ ++ AL+DAG+PMK H+A +A+
Sbjct: 411 ALVAMLPKGEDFSYTIRVVSEITESNGSSSMASVCGGSLALMDAGVPMKDHVAGIAMGLI 470
Query: 175 SAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAM 234
+ + +L +E + + V G + +Q + GI + A+
Sbjct: 471 KDGNRFAVLTDILGDEDHLGDMDFKVAGTE------NGVTALQMDIKIQGITKEIMQVAL 524
Query: 235 SV--DDYFHCLERGR----AASAKLSDFLRRSLQSKL 265
+ + H L++ + A ++S+F R L K+
Sbjct: 525 AQAGEGRLHILKQMKDALGVARGEVSEFAPRMLNMKI 561
>gi|422348484|ref|ZP_16429377.1| polyribonucleotide nucleotidyltransferase [Sutterella
wadsworthensis 2_1_59BFAA]
gi|404659400|gb|EKB32252.1| polyribonucleotide nucleotidyltransferase [Sutterella
wadsworthensis 2_1_59BFAA]
Length = 707
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 57/276 (20%), Positives = 106/276 (38%), Gaps = 39/276 (14%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR+ +RP+ S+L R HGSA +++G +T L +
Sbjct: 322 RIDGRDTRTVRPIEIRQSVLPRTHGSALFTRG----ETQALVLTTLGTKQDEQIIDGLCE 377
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEI----ILKRTLQS 120
+ + P T + TG++G P K EI + KR L++
Sbjct: 378 ETHDRFMLHYNMPPFATGE----------------TGRVGSP-KRREIGHGRLAKRALKA 420
Query: 121 ICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESG- 179
+ T V+ ++ +G+ ++ C +++DAG+P+K + + G
Sbjct: 421 VLPTAEEFQYTIRVVSEITESNGSSSMASVCGGCLSMLDAGVPLKDYVAGVAMGLIKEGN 480
Query: 180 -YCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSV-- 236
+ +L +E + + V + EG + +Q + GI + A++
Sbjct: 481 KFAVLTDILGDEDHLGDMDFKVAGTA------EGVTALQMDIKIEGITAEIMQAALAQAH 534
Query: 237 DDYFHCL----ERGRAASAKLSDFLRRSLQSKLPGD 268
+ H L E + +LSDF R + K+ D
Sbjct: 535 EGRQHILGKMHEMAGGGAKELSDFAPRMISFKIDQD 570
>gi|390597939|gb|EIN07338.1| ribosomal protein S5 domain 2-like protein [Punctularia
strigosozonata HHB-11173 SS5]
Length = 266
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 86/206 (41%), Gaps = 45/206 (21%)
Query: 7 DGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSG 66
+GR + +RP+ ++ +A+GSA +I+T
Sbjct: 41 NGRGASDIRPIFLKAGLISQANGSA-------YIETER---------------------- 71
Query: 67 DTKVLAAVYGPKAGTKKNENPE-KASIEVIWKP------RTGQIGKPEKEYEIILKRTLQ 119
TK++ AVYGP+ + + + K ++EV + P R ++ ++++R+L
Sbjct: 72 -TKLVCAVYGPRQSKSTSYSEKGKLNVEVKFAPFSCTRRRVPNRDAEDRPIAMLIQRSLN 130
Query: 120 SICILTINPNTTTSVIIQVVHDDG--ALLPCAINAACAALVDAGIPMKHLAVAICCCSAE 177
+ L + P +T + I ++ +DG + AA AL A I M L + + C +A
Sbjct: 131 AAVRLELFPKSTIDIFITIIENDGIEGCVASGTVAASTALAQARIEM--LGMVMSCSAAN 188
Query: 178 SG----YCILDPTKLEEQKMKGFAYL 199
+ LDPT E + G L
Sbjct: 189 TADVGKELWLDPTDAESRLASGILVL 214
>gi|335043383|ref|ZP_08536410.1| polyribonucleotide nucleotidyltransferase [Methylophaga
aminisulfidivorans MP]
gi|333789997|gb|EGL55879.1| polyribonucleotide nucleotidyltransferase [Methylophaga
aminisulfidivorans MP]
Length = 699
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 59/280 (21%), Positives = 108/280 (38%), Gaps = 47/280 (16%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR+ +RP+ ++ R HGSA +++G T
Sbjct: 314 RIDGRDTASVRPIFVETGLVPRVHGSALFTRGE----------------TQAIVIATLGA 357
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKP----RTGQIGKPEKEYEI----ILKR 116
D + + AV G E ++ + + P TG +G P K EI + KR
Sbjct: 358 ERDAQTIDAVEG--------EYRDRFMLHYNFPPYCVGETGMVGSP-KRREIGHGKLAKR 408
Query: 117 TLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKH--LAVAICCC 174
+Q++ V+ ++ +G+ ++ AL+DAG+P+K +A+
Sbjct: 409 GVQAVMPTAAEFPYVVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKAPVAGIAMGLI 468
Query: 175 SAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAM 234
E+GY +L +E + + V +G + +Q + GI + A+
Sbjct: 469 KEENGYAVLTDILGDEDHLGDMDFKVAGTE------KGVTALQMDIKIEGINEEIMRTAL 522
Query: 235 SV--DDYFHCLERGRAA----SAKLSDFLRRSLQSKLPGD 268
+ D H L + A ++S+F R + K+ D
Sbjct: 523 AQARDGRMHILTKMNAVISSHRTEMSEFAPRIITIKINAD 562
>gi|75763848|ref|ZP_00743497.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar israelensis ATCC 35646]
gi|74488666|gb|EAO52233.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar israelensis ATCC 35646]
Length = 525
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 78/182 (42%), Gaps = 21/182 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +++RPLA IL R HGS +++G T C
Sbjct: 129 RPDGRKGDEIRPLASEVGILSRTHGSGLFTRG----------------QTQAXSICTLGA 172
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEV-IWKPRTGQIGKPEKEYEIILKRTLQSICI 123
GD ++L + G + + + S V +P G G+ E + + +R L+ +
Sbjct: 173 LGDVQILDGL-GVEESKRFMHHYNFPSFSVGETRPMRGP-GRREIGHGALGERALEPVIP 230
Query: 124 LTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESG--YC 181
+ T ++ +V+ +G+ +I + A++DAG+P+K I +SG Y
Sbjct: 231 SEKDFPYTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHYT 290
Query: 182 IL 183
IL
Sbjct: 291 IL 292
>gi|449542303|gb|EMD33282.1| hypothetical protein CERSUDRAFT_76538 [Ceriporiopsis subvermispora
B]
Length = 267
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 13/127 (10%)
Query: 60 CYWVGSGDTKVLAAVYGPKAGTKKNENPEKASI---EVIWKP-RTGQIGKPEKEYEIIL- 114
C + G T+V +V+GP+ ++++ ++ EV P TG+ + + IL
Sbjct: 39 CASIAHGLTQVSVSVFGPREAKQRSQTLHDRAVLNVEVNVLPFSTGERRRRGRADRRILE 98
Query: 115 -----KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAV 169
K T + + T+ P + + V DG LLP IN AL AG+P+
Sbjct: 99 LAASIKATFEPVVQTTLYPRAQIDIFVSVQQQDGGLLPACINGTTLALAAAGVPLLDF-- 156
Query: 170 AICCCSA 176
+C SA
Sbjct: 157 -VCAVSA 162
>gi|221053137|ref|XP_002257943.1| hypothetical protein, conserved in Apicomplexan species [Plasmodium
knowlesi strain H]
gi|193807775|emb|CAQ38480.1| hypothetical protein, conserved in Apicomplexan species [Plasmodium
knowlesi strain H]
Length = 268
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 67/141 (47%), Gaps = 11/141 (7%)
Query: 60 CYWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTL- 118
C++ G+TK+LA +YGPK +K N +K + + K + E + +K L
Sbjct: 58 CFY-SLGNTKILALIYGPKPDSK-NATYDKGKVFLEIKSLNMNDDRANDESDENIKNLLL 115
Query: 119 ---QSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAV-----A 170
S+ +L P + ++ ++ +DG L + AL++A I M+ + V +
Sbjct: 116 ECVSSVILLDQYPQCSINIKCLIIQNDGGCLSATLTCISLALINAQIKMRDIIVSVNVNS 175
Query: 171 ICCCSAESGYCILDPTKLEEQ 191
I C + + + ++D LEE+
Sbjct: 176 IICPNTKRVFHLVDVDNLEEK 196
>gi|118594124|ref|ZP_01551471.1| polynucleotide phosphorylase/polyadenylase [Methylophilales
bacterium HTCC2181]
gi|118439902|gb|EAV46529.1| polynucleotide phosphorylase/polyadenylase [Methylophilales
bacterium HTCC2181]
Length = 716
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 85/190 (44%), Gaps = 37/190 (19%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR+ +RP+ +L RAHGSA +++G ++ +G
Sbjct: 324 RIDGRDTRTVRPIEIRTGVLPRAHGSALFTRG-----------------ETQAIVVATLG 366
Query: 65 SG-DTKVLAAVYGPKAGTKKNENPEKASIEVIWKP----RTGQIGKPEKEYEI----ILK 115
+G D +++ A+ G E ++ + + P TG++G P K EI + K
Sbjct: 367 TGRDEQIIDALQG--------EFKDRFMLHYNFPPYATGETGRVGTP-KRREIGHGKLAK 417
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPM-KHLA-VAICC 173
R L + + + T ++ ++ +G+ +I A++DAG+PM H+A +A+
Sbjct: 418 RGLSAALPSKEDFDYTIRLVSEITESNGSSSMASICGGTMAMMDAGVPMTDHVAGIAMGL 477
Query: 174 CSAESGYCIL 183
++ +L
Sbjct: 478 IKEDNRVAVL 487
>gi|410455997|ref|ZP_11309867.1| polynucleotide phosphorylase/polyadenylase [Bacillus bataviensis
LMG 21833]
gi|409928550|gb|EKN65654.1| polynucleotide phosphorylase/polyadenylase [Bacillus bataviensis
LMG 21833]
Length = 705
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 80/184 (43%), Gaps = 25/184 (13%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +++RPL+ SIL R HGS +++G T C
Sbjct: 316 RPDGRKIDEIRPLSSQVSILPRTHGSGLFTRG----------------QTQALSICTLGA 359
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQI---GKPEKEYEIILKRTLQSI 121
GD ++L + G + + + S V TG I G+ E + + +R L+ +
Sbjct: 360 MGDVQILDGL-GIEEEKRFMHHYNFPSFSV---GETGPIRGPGRREIGHGALGERALEPV 415
Query: 122 CILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESG-- 179
+ T ++ +V+ +G+ +I A+ A++DAG+P+K I +SG
Sbjct: 416 IPSEKDFPYTIRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKSGEH 475
Query: 180 YCIL 183
Y +L
Sbjct: 476 YTVL 479
>gi|301055297|ref|YP_003793508.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus biovar
anthracis str. CI]
gi|300377466|gb|ADK06370.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus biovar
anthracis str. CI]
Length = 712
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 78/182 (42%), Gaps = 21/182 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +++RPLA IL R HGS +++G T C
Sbjct: 316 RPDGRKGDEIRPLASEVGILSRTHGSGLFTRG----------------QTQALSICTLGA 359
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEV-IWKPRTGQIGKPEKEYEIILKRTLQSICI 123
GD ++L + G + + + S V +P G G+ E + + +R L+ +
Sbjct: 360 LGDVQILDGL-GVEESKRFMHHYNFPSFSVGETRPMRGP-GRREIGHGALGERALEPVIP 417
Query: 124 LTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESG--YC 181
+ T ++ +V+ +G+ +I + A++DAG+P+K I ++G Y
Sbjct: 418 SEKDFPYTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHYT 477
Query: 182 IL 183
IL
Sbjct: 478 IL 479
>gi|30263811|ref|NP_846188.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
Ames]
gi|47529234|ref|YP_020583.1| polynucleotide phosphorylase [Bacillus anthracis str. 'Ames
Ancestor']
gi|49186657|ref|YP_029909.1| polynucleotide phosphorylase [Bacillus anthracis str. Sterne]
gi|65321134|ref|ZP_00394093.1| COG1185: Polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [Bacillus anthracis str. A2012]
gi|170706809|ref|ZP_02897267.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
A0389]
gi|229603609|ref|YP_002868046.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
A0248]
gi|254759341|ref|ZP_05211366.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
Australia 94]
gi|81583685|sp|Q81WM8.1|PNP_BACAN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|254782703|sp|C3P5L0.1|PNP_BACAA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|30258455|gb|AAP27674.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
Ames]
gi|47504382|gb|AAT33058.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
'Ames Ancestor']
gi|49180584|gb|AAT55960.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
Sterne]
gi|170128227|gb|EDS97096.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
A0389]
gi|229268017|gb|ACQ49654.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
A0248]
Length = 712
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 78/182 (42%), Gaps = 21/182 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +++RPLA IL R HGS +++G T C
Sbjct: 316 RPDGRKGDEIRPLASEVGILSRTHGSGLFTRG----------------QTQALSICTLGA 359
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEV-IWKPRTGQIGKPEKEYEIILKRTLQSICI 123
GD ++L + G + + + S V +P G G+ E + + +R L+ +
Sbjct: 360 LGDVQILDGL-GVEESKRFMHHYNFPSFSVGETRPMRGP-GRREIGHGALGERALEPVIP 417
Query: 124 LTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESG--YC 181
+ T ++ +V+ +G+ +I + A++DAG+P+K I ++G Y
Sbjct: 418 SEKDFPYTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHYT 477
Query: 182 IL 183
IL
Sbjct: 478 IL 479
>gi|47569084|ref|ZP_00239773.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus G9241]
gi|49478386|ref|YP_037868.1| polynucleotide phosphorylase [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|52141682|ref|YP_085148.1| polynucleotide phosphorylase [Bacillus cereus E33L]
gi|118479027|ref|YP_896178.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis
str. Al Hakam]
gi|165872621|ref|ZP_02217252.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
A0488]
gi|167635853|ref|ZP_02394162.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
A0442]
gi|167639866|ref|ZP_02398135.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
A0193]
gi|170687834|ref|ZP_02879048.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
A0465]
gi|177652128|ref|ZP_02934674.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
A0174]
gi|190568447|ref|ZP_03021354.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
Tsiankovskii-I]
gi|196042164|ref|ZP_03109447.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
NVH0597-99]
gi|196044582|ref|ZP_03111817.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus 03BB108]
gi|227813285|ref|YP_002813294.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
CDC 684]
gi|228928856|ref|ZP_04091888.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228935122|ref|ZP_04097949.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228986950|ref|ZP_04147076.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|229092848|ref|ZP_04223982.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
Rock3-42]
gi|229123320|ref|ZP_04252524.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus 95/8201]
gi|229157384|ref|ZP_04285462.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus ATCC
4342]
gi|229186044|ref|ZP_04313214.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus BGSC
6E1]
gi|254683486|ref|ZP_05147346.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
CNEVA-9066]
gi|254735845|ref|ZP_05193551.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
Western North America USA6153]
gi|254739629|ref|ZP_05197323.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
Kruger B]
gi|254755998|ref|ZP_05208029.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
Vollum]
gi|386737630|ref|YP_006210811.1| Polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
H9401]
gi|421507348|ref|ZP_15954268.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
UR-1]
gi|421639561|ref|ZP_16080152.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
BF1]
gi|423550444|ref|ZP_17526771.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus ISP3191]
gi|81395117|sp|Q6HF08.1|PNP_BACHK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|81686592|sp|Q636L9.1|PNP_BACCZ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187470934|sp|A0RHH8.1|PNP_BACAH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|254782704|sp|C3L7C0.1|PNP_BACAC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|47554246|gb|EAL12608.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus G9241]
gi|49329942|gb|AAT60588.1| polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar konkukian str. 97-27]
gi|51975151|gb|AAU16701.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus E33L]
gi|118418252|gb|ABK86671.1| polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
str. Al Hakam]
gi|164711653|gb|EDR17199.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
A0488]
gi|167512267|gb|EDR87644.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
A0193]
gi|167528810|gb|EDR91568.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
A0442]
gi|170668150|gb|EDT18899.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
A0465]
gi|172082497|gb|EDT67562.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
A0174]
gi|190560451|gb|EDV14429.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
Tsiankovskii-I]
gi|196024617|gb|EDX63289.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus 03BB108]
gi|196027016|gb|EDX65640.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
NVH0597-99]
gi|227006240|gb|ACP15983.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
CDC 684]
gi|228597463|gb|EEK55113.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus BGSC
6E1]
gi|228626111|gb|EEK82860.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus ATCC
4342]
gi|228660096|gb|EEL15732.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus 95/8201]
gi|228690470|gb|EEL44253.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
Rock3-42]
gi|228772728|gb|EEM21168.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|228824487|gb|EEM70292.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228830663|gb|EEM76268.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|384387482|gb|AFH85143.1| Polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
H9401]
gi|401190060|gb|EJQ97110.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus ISP3191]
gi|401822482|gb|EJT21632.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
UR-1]
gi|403393226|gb|EJY90471.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
BF1]
Length = 712
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 78/182 (42%), Gaps = 21/182 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +++RPLA IL R HGS +++G T C
Sbjct: 316 RPDGRKGDEIRPLASEVGILSRTHGSGLFTRG----------------QTQALSICTLGA 359
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEV-IWKPRTGQIGKPEKEYEIILKRTLQSICI 123
GD ++L + G + + + S V +P G G+ E + + +R L+ +
Sbjct: 360 LGDVQILDGL-GVEESKRFMHHYNFPSFSVGETRPMRGP-GRREIGHGALGERALEPVIP 417
Query: 124 LTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESG--YC 181
+ T ++ +V+ +G+ +I + A++DAG+P+K I ++G Y
Sbjct: 418 SEKDFPYTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHYT 477
Query: 182 IL 183
IL
Sbjct: 478 IL 479
>gi|229146378|ref|ZP_04274749.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
BDRD-ST24]
gi|228637011|gb|EEK93470.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
BDRD-ST24]
Length = 717
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 78/182 (42%), Gaps = 21/182 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +++RPLA IL R HGS +++G T C
Sbjct: 316 RPDGRKGDEIRPLASEVGILSRTHGSGLFTRG----------------QTQALSICTLGA 359
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEV-IWKPRTGQIGKPEKEYEIILKRTLQSICI 123
GD ++L + G + + + S V +P G G+ E + + +R L+ +
Sbjct: 360 LGDVQILDGL-GVEESKRFMHHYNFPSFSVGETRPMRGP-GRREIGHGALGERALEPVIP 417
Query: 124 LTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESG--YC 181
+ T ++ +V+ +G+ +I + A++DAG+P+K I ++G Y
Sbjct: 418 SEKDFPYTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHYT 477
Query: 182 IL 183
IL
Sbjct: 478 IL 479
>gi|228922561|ref|ZP_04085861.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|228954083|ref|ZP_04116112.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|229047493|ref|ZP_04193083.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH676]
gi|229071305|ref|ZP_04204528.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus F65185]
gi|229081062|ref|ZP_04213572.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus Rock4-2]
gi|229111278|ref|ZP_04240831.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
Rock1-15]
gi|229129083|ref|ZP_04258056.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
BDRD-Cer4]
gi|229152007|ref|ZP_04280202.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus m1550]
gi|229191976|ref|ZP_04318946.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus ATCC
10876]
gi|296504303|ref|YP_003666003.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis
BMB171]
gi|365159416|ref|ZP_09355597.1| polyribonucleotide nucleotidyltransferase [Bacillus sp.
7_6_55CFAA_CT2]
gi|423425943|ref|ZP_17402974.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG3X2-2]
gi|423437262|ref|ZP_17414243.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG4X12-1]
gi|423503516|ref|ZP_17480108.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus HD73]
gi|423582017|ref|ZP_17558128.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD014]
gi|423585784|ref|ZP_17561871.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD045]
gi|423635422|ref|ZP_17611075.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD156]
gi|423641112|ref|ZP_17616730.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD166]
gi|423649670|ref|ZP_17625240.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD169]
gi|423656666|ref|ZP_17631965.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD200]
gi|449090749|ref|YP_007423190.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar kurstaki str. HD73]
gi|228591527|gb|EEK49376.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus ATCC
10876]
gi|228631356|gb|EEK87990.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus m1550]
gi|228654320|gb|EEL10185.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
BDRD-Cer4]
gi|228672054|gb|EEL27345.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
Rock1-15]
gi|228702106|gb|EEL54582.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus Rock4-2]
gi|228711759|gb|EEL63711.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus F65185]
gi|228723740|gb|EEL75095.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH676]
gi|228805649|gb|EEM52239.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|228836990|gb|EEM82331.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|296325355|gb|ADH08283.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis
BMB171]
gi|363625414|gb|EHL76455.1| polyribonucleotide nucleotidyltransferase [Bacillus sp.
7_6_55CFAA_CT2]
gi|401110690|gb|EJQ18589.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG3X2-2]
gi|401120417|gb|EJQ28213.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG4X12-1]
gi|401212896|gb|EJR19637.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD014]
gi|401233130|gb|EJR39626.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD045]
gi|401278173|gb|EJR84109.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD156]
gi|401280173|gb|EJR86095.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD166]
gi|401282950|gb|EJR88847.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD169]
gi|401290407|gb|EJR96101.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD200]
gi|402458870|gb|EJV90610.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus HD73]
gi|449024506|gb|AGE79669.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar kurstaki str. HD73]
Length = 712
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 78/182 (42%), Gaps = 21/182 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +++RPLA IL R HGS +++G T C
Sbjct: 316 RPDGRKGDEIRPLASEVGILSRTHGSGLFTRG----------------QTQALSICTLGA 359
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEV-IWKPRTGQIGKPEKEYEIILKRTLQSICI 123
GD ++L + G + + + S V +P G G+ E + + +R L+ +
Sbjct: 360 LGDVQILDGL-GVEESKRFMHHYNFPSFSVGETRPMRGP-GRREIGHGALGERALEPVIP 417
Query: 124 LTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESG--YC 181
+ T ++ +V+ +G+ +I + A++DAG+P+K I ++G Y
Sbjct: 418 SEKDFPYTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHYT 477
Query: 182 IL 183
IL
Sbjct: 478 IL 479
>gi|229019001|ref|ZP_04175843.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1273]
gi|229025246|ref|ZP_04181668.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1272]
gi|423389886|ref|ZP_17367112.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG1X1-3]
gi|423418286|ref|ZP_17395375.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG3X2-1]
gi|228736074|gb|EEL86647.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1272]
gi|228742329|gb|EEL92487.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1273]
gi|401106559|gb|EJQ14520.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG3X2-1]
gi|401641977|gb|EJS59694.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG1X1-3]
Length = 712
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 78/182 (42%), Gaps = 21/182 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +++RPLA IL R HGS +++G T C
Sbjct: 316 RPDGRKGDEIRPLASEVGILSRTHGSGLFTRG----------------QTQALSICTLGA 359
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEV-IWKPRTGQIGKPEKEYEIILKRTLQSICI 123
GD ++L + G + + + S V +P G G+ E + + +R L+ +
Sbjct: 360 LGDVQILDGL-GVEESKRFMHHYNFPSFSVGETRPMRGP-GRREIGHGALGERALEPVIP 417
Query: 124 LTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESG--YC 181
+ T ++ +V+ +G+ +I + A++DAG+P+K I ++G Y
Sbjct: 418 SEKDFPYTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHYT 477
Query: 182 IL 183
IL
Sbjct: 478 IL 479
>gi|225865786|ref|YP_002751164.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus 03BB102]
gi|254782705|sp|C1EP29.1|PNP_BACC3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|225790852|gb|ACO31069.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus 03BB102]
Length = 712
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 78/182 (42%), Gaps = 21/182 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +++RPLA IL R HGS +++G T C
Sbjct: 316 RPDGRKGDEIRPLASEVGILSRTHGSGLFTRG----------------QTQALSICTLGA 359
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEV-IWKPRTGQIGKPEKEYEIILKRTLQSICI 123
GD ++L + G + + + S V +P G G+ E + + +R L+ +
Sbjct: 360 LGDVQILDGL-GVEESKRFMHHYNFPSFSVGETRPMRGP-GRREIGHGALGERALEPVIP 417
Query: 124 LTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESG--YC 181
+ T ++ +V+ +G+ +I + A++DAG+P+K I ++G Y
Sbjct: 418 SEKDFPYTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHYT 477
Query: 182 IL 183
IL
Sbjct: 478 IL 479
>gi|160944532|ref|ZP_02091760.1| hypothetical protein FAEPRAM212_02045 [Faecalibacterium prausnitzii
M21/2]
gi|158444314|gb|EDP21318.1| polyribonucleotide nucleotidyltransferase [Faecalibacterium
prausnitzii M21/2]
Length = 713
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 85/195 (43%), Gaps = 26/195 (13%)
Query: 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCY 61
E R DGR N++RPLA IL R HGS +++G QT V T+ C
Sbjct: 319 EGKRVDGRGINEIRPLAAEVGILPRVHGSGMFTRG----QTQ--------VLTT----CT 362
Query: 62 WVGSGDTKVLAAVYGPKAGTKK---NENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTL 118
G+ D +++ + + TK+ + N S+ PR+ G+ E + + +R L
Sbjct: 363 LGGTKDNQLMDDLTDEQ--TKRYIHHYNFPPYSVGEARAPRSP--GRREIGHGALAERAL 418
Query: 119 QSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC---CS 175
+ T + +V+ +G+ +I + AL+DAG+P+K I C
Sbjct: 419 VPVLPSLEEFPYTIRCVSEVLSSNGSTSQASICGSTLALMDAGVPIKAPVAGISCGLITE 478
Query: 176 AESGYCILDPTKLEE 190
E +LD +E+
Sbjct: 479 GERWMTMLDIQGVED 493
>gi|357461605|ref|XP_003601084.1| Exosome complex exonuclease RRP41 [Medicago truncatula]
gi|355490132|gb|AES71335.1| Exosome complex exonuclease RRP41 [Medicago truncatula]
Length = 276
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 77/178 (43%), Gaps = 31/178 (17%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P ++R + + +A+G R + +F G
Sbjct: 10 RLDGRRPMEMRQIRAEIGAVSKANGDR-----MRKPKGDSGQNF---------------G 49
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVI-WKPRTGQIG-KPEKEYEIILKRTLQSIC 122
+ LA + G G EK+ +E + WK + IG + E +++++T++
Sbjct: 50 NQSAAKLACMMG--YGGLAAYLSEKSLVEQLGWKYQL--IGNRRSTEISLVIRQTMEERI 105
Query: 123 ILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGY 180
+ + P + + +QV+ DG INAA AL DAGIP++ L + CSA GY
Sbjct: 106 LTHLMPRSQIDIYVQVLQADGGTRSACINAATLALADAGIPVRDL---VTSCSA--GY 158
>gi|228960024|ref|ZP_04121688.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|423628900|ref|ZP_17604649.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD154]
gi|228799540|gb|EEM46493.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|401268445|gb|EJR74493.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD154]
Length = 712
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 78/182 (42%), Gaps = 21/182 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +++RPLA IL R HGS +++G T C
Sbjct: 316 RPDGRKGDEIRPLASEVGILSRTHGSGLFTRG----------------QTQALSICTLGA 359
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEV-IWKPRTGQIGKPEKEYEIILKRTLQSICI 123
GD ++L + G + + + S V +P G G+ E + + +R L+ +
Sbjct: 360 LGDVQILDGL-GVEESKRFMHHYNFPSFSVGETRPMRGP-GRREIGHGALGERALEPVIP 417
Query: 124 LTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESG--YC 181
+ T ++ +V+ +G+ +I + A++DAG+P+K I ++G Y
Sbjct: 418 SEKDFPYTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHYT 477
Query: 182 IL 183
IL
Sbjct: 478 IL 479
>gi|218665115|ref|YP_002424891.1| polyribonucleotide nucleotidyltransferase [Acidithiobacillus
ferrooxidans ATCC 23270]
gi|257096668|sp|B7J4D8.1|PNP_ACIF2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|218517328|gb|ACK77914.1| polyribonucleotide nucleotidyltransferase [Acidithiobacillus
ferrooxidans ATCC 23270]
Length = 690
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 82/190 (43%), Gaps = 37/190 (19%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR+ +RP+ +L R HGSA +++G ++ +G
Sbjct: 311 RIDGRDSKTVRPITIEAGVLPRTHGSALFTRG-----------------ETQALVVATLG 353
Query: 65 S-GDTKVLAAVYGPKAGTKKNENPEKASIEVIWKP----RTGQIGKPEKEYEI----ILK 115
+ GD +++ A+ G E+ ++ + + P TG +G P K EI + K
Sbjct: 354 TKGDEQIIDALQG--------ESRDRFMLHYNFPPFSTGETGMVGSP-KRREIGHGRLAK 404
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKH--LAVAICC 173
R + ++ + V+ +V+ +G+ + A AL+DAG+P+K VA+
Sbjct: 405 RAIAAVLPTDSEFPYSLRVVSEVLESNGSSSMATVCGASLALMDAGVPLKAPVAGVAMGL 464
Query: 174 CSAESGYCIL 183
+ + +L
Sbjct: 465 IKEGARFAVL 474
>gi|198282699|ref|YP_002219020.1| polyribonucleotide nucleotidyltransferase [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|415995484|ref|ZP_11560357.1| polyribonucleotide nucleotidyltransferase [Acidithiobacillus sp.
GGI-221]
gi|226702590|sp|B5EMD4.1|PNP_ACIF5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|198247220|gb|ACH82813.1| Polyribonucleotide nucleotidyltransferase [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|339835599|gb|EGQ63258.1| polyribonucleotide nucleotidyltransferase [Acidithiobacillus sp.
GGI-221]
Length = 692
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 82/190 (43%), Gaps = 37/190 (19%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR+ +RP+ +L R HGSA +++G ++ +G
Sbjct: 313 RIDGRDSKTVRPITIEAGVLPRTHGSALFTRG-----------------ETQALVVATLG 355
Query: 65 S-GDTKVLAAVYGPKAGTKKNENPEKASIEVIWKP----RTGQIGKPEKEYEI----ILK 115
+ GD +++ A+ G E+ ++ + + P TG +G P K EI + K
Sbjct: 356 TKGDEQIIDALQG--------ESRDRFMLHYNFPPFSTGETGMVGSP-KRREIGHGRLAK 406
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKH--LAVAICC 173
R + ++ + V+ +V+ +G+ + A AL+DAG+P+K VA+
Sbjct: 407 RAIAAVLPTDSEFPYSLRVVSEVLESNGSSSMATVCGASLALMDAGVPLKAPVAGVAMGL 466
Query: 174 CSAESGYCIL 183
+ + +L
Sbjct: 467 IKEGARFAVL 476
>gi|228947527|ref|ZP_04109817.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228812047|gb|EEM58378.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
Length = 712
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 78/182 (42%), Gaps = 21/182 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +++RPLA IL R HGS +++G T C
Sbjct: 316 RPDGRKGDEIRPLASEVGILSRTHGSGLFTRG----------------QTQALSICTLGA 359
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEV-IWKPRTGQIGKPEKEYEIILKRTLQSICI 123
GD ++L + G + + + S V +P G G+ E + + +R L+ +
Sbjct: 360 LGDVQILDGL-GVEESKRFMHHYNFPSFSVGETRPMRGP-GRREIGHGALGERALEPVIP 417
Query: 124 LTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESG--YC 181
+ T ++ +V+ +G+ +I + A++DAG+P+K I ++G Y
Sbjct: 418 SEKDFPYTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHYT 477
Query: 182 IL 183
IL
Sbjct: 478 IL 479
>gi|229180084|ref|ZP_04307428.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus 172560W]
gi|423412388|ref|ZP_17389508.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus BAG3O-2]
gi|423431827|ref|ZP_17408831.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus BAG4O-1]
gi|228603293|gb|EEK60770.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus 172560W]
gi|401104456|gb|EJQ12433.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus BAG3O-2]
gi|401116583|gb|EJQ24421.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus BAG4O-1]
Length = 712
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 78/182 (42%), Gaps = 21/182 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +++RPLA IL R HGS +++G T C
Sbjct: 316 RPDGRKGDEIRPLASEVGILSRTHGSGLFTRG----------------QTQALSICTLGA 359
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEV-IWKPRTGQIGKPEKEYEIILKRTLQSICI 123
GD ++L + G + + + S V +P G G+ E + + +R L+ +
Sbjct: 360 LGDVQILDGL-GVEESKRFMHHYNFPSFSVGETRPMRGP-GRREIGHGALGERALEPVIP 417
Query: 124 LTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESG--YC 181
+ T ++ +V+ +G+ +I + A++DAG+P+K I ++G Y
Sbjct: 418 SEKDFPYTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHYT 477
Query: 182 IL 183
IL
Sbjct: 478 IL 479
>gi|254722007|ref|ZP_05183796.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
A1055]
Length = 712
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 78/182 (42%), Gaps = 21/182 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +++RPLA IL R HGS +++G T C
Sbjct: 316 RPDGRKGDEIRPLASEVGILSRTHGSGLFTRG----------------QTQALSICTLGA 359
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEV-IWKPRTGQIGKPEKEYEIILKRTLQSICI 123
GD ++L + G + + + S V +P G G+ E + + +R L+ +
Sbjct: 360 LGDVQILDGL-GVEESKRFMHHYNFPSFSVGETRPMRGP-GRREIGHGALGERALEPVIP 417
Query: 124 LTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESG--YC 181
+ T ++ +V+ +G+ +I + A++DAG+P+K I ++G Y
Sbjct: 418 SEKDFPYTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHYT 477
Query: 182 IL 183
IL
Sbjct: 478 IL 479
>gi|218232388|ref|YP_002368608.1| polynucleotide phosphorylase [Bacillus cereus B4264]
gi|226702617|sp|B7HDT0.1|PNP_BACC4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|218160345|gb|ACK60337.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus B4264]
Length = 712
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 78/182 (42%), Gaps = 21/182 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +++RPLA IL R HGS +++G T C
Sbjct: 316 RPDGRKGDEIRPLASEVGILSRTHGSGLFTRG----------------QTQALSICTLGA 359
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEV-IWKPRTGQIGKPEKEYEIILKRTLQSICI 123
GD ++L + G + + + S V +P G G+ E + + +R L+ +
Sbjct: 360 LGDVQILDGL-GVEESKRFMHHYNFPSFSVGETRPMRGP-GRREIGHGALGERALEPVIP 417
Query: 124 LTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESG--YC 181
+ T ++ +V+ +G+ +I + A++DAG+P+K I ++G Y
Sbjct: 418 SEKDFPYTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHYT 477
Query: 182 IL 183
IL
Sbjct: 478 IL 479
>gi|229174473|ref|ZP_04302005.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus MM3]
gi|423401351|ref|ZP_17378524.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG2X1-2]
gi|423458010|ref|ZP_17434807.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG5X2-1]
gi|423477945|ref|ZP_17454660.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG6X1-1]
gi|228609033|gb|EEK66323.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus MM3]
gi|401148394|gb|EJQ55887.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG5X2-1]
gi|401654341|gb|EJS71884.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG2X1-2]
gi|402428107|gb|EJV60204.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG6X1-1]
Length = 712
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 78/182 (42%), Gaps = 21/182 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +++RPLA IL R HGS +++G T C
Sbjct: 316 RPDGRKGDEIRPLASEVGILSRTHGSGLFTRG----------------QTQALSICTLGA 359
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEV-IWKPRTGQIGKPEKEYEIILKRTLQSICI 123
GD ++L + G + + + S V +P G G+ E + + +R L+ +
Sbjct: 360 LGDVQILDGL-GVEESKRFMHHYNFPSFSVGETRPMRGP-GRREIGHGALGERALEPVIP 417
Query: 124 LTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESG--YC 181
+ T ++ +V+ +G+ +I + A++DAG+P+K I ++G Y
Sbjct: 418 SEKDFPYTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHYT 477
Query: 182 IL 183
IL
Sbjct: 478 IL 479
>gi|376267701|ref|YP_005120413.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus F837/76]
gi|364513501|gb|AEW56900.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus F837/76]
Length = 712
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 78/182 (42%), Gaps = 21/182 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +++RPLA IL R HGS +++G T C
Sbjct: 316 RPDGRKGDEIRPLASEVGILSRTHGSGLFTRG----------------QTQALSICTLGA 359
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEV-IWKPRTGQIGKPEKEYEIILKRTLQSICI 123
GD ++L + G + + + S V +P G G+ E + + +R L+ +
Sbjct: 360 LGDVQILDGL-GVEESKRFMHHYNFPSFSVGETRPMRGP-GRREIGHGALGERALEPVIP 417
Query: 124 LTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESG--YC 181
+ T ++ +V+ +G+ +I + A++DAG+P+K I ++G Y
Sbjct: 418 SEKDFPYTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHYT 477
Query: 182 IL 183
IL
Sbjct: 478 IL 479
>gi|328853860|gb|EGG02996.1| hypothetical protein MELLADRAFT_109732 [Melampsora larici-populina
98AG31]
Length = 319
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 50/226 (22%), Positives = 84/226 (37%), Gaps = 53/226 (23%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFC 60
M R+D R +RPL S S L RA GS C F
Sbjct: 1 MLFRRSDARTNLDIRPLTISLSTLSRADGS--------------------------CNFA 34
Query: 61 YWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQS 120
+ GD KVL A+ GP +E P+ A++EV P + G K +K +
Sbjct: 35 F----GDLKVLGAMTGPAEVKVWDEKPKHATVEVNVLPISSLPGPSSKSSAQSIKSFISP 90
Query: 121 ICILTINPNTTTSVIIQVV--------------------HDDGALLPCAINAACAALVDA 160
I L P + + +Q + ++ + +NA+ AL+D
Sbjct: 91 IIYLEQYPRSLIQINLQTLSKPSERWSSTRKPSRLGFEENESISERAALMNASSIALLDG 150
Query: 161 GIPMKHLAVAICCCSAESGYCIL---DPTKLEEQKMKGFAYLVFPN 203
G+ M + +A+ +S D +++E + + + L+ P+
Sbjct: 151 GVGMSGVGIAVAVAIVKSELVQQIGEDEDRMKEDEDQEWVILLDPS 196
>gi|218904934|ref|YP_002452768.1| polynucleotide phosphorylase/polyadenylase [Bacillus cereus AH820]
gi|226702597|sp|B7JJ84.1|PNP_BACC0 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|218539646|gb|ACK92044.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus AH820]
Length = 712
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 78/182 (42%), Gaps = 21/182 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +++RPLA IL R HGS +++G T C
Sbjct: 316 RPDGRKGDEIRPLASEVGILSRTHGSGLFTRG----------------QTQALSICTLGA 359
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEV-IWKPRTGQIGKPEKEYEIILKRTLQSICI 123
GD ++L + G + + + S V +P G G+ E + + +R L+ +
Sbjct: 360 LGDVQILDGL-GVEESKRFMHHYNFPSFSVGETRPMRGP-GRREIGHGALGERALEPVIP 417
Query: 124 LTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESG--YC 181
+ T ++ +V+ +G+ +I + A++DAG+P+K I ++G Y
Sbjct: 418 SEKDFPYTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHYT 477
Query: 182 IL 183
IL
Sbjct: 478 IL 479
>gi|229031437|ref|ZP_04187437.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1271]
gi|228729726|gb|EEL80706.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1271]
Length = 712
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 78/182 (42%), Gaps = 21/182 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +++RPLA IL R HGS +++G T C
Sbjct: 316 RPDGRKGDEIRPLASEVGILSRTHGSGLFTRG----------------QTQALSICTLGA 359
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEV-IWKPRTGQIGKPEKEYEIILKRTLQSICI 123
GD ++L + G + + + S V +P G G+ E + + +R L+ +
Sbjct: 360 LGDVQILDGL-GVEESKRFMHHYNFPSFSVGETRPMRGP-GRREIGHGALGERALEPVIP 417
Query: 124 LTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESG--YC 181
+ T ++ +V+ +G+ +I + A++DAG+P+K I ++G Y
Sbjct: 418 SEKDFPYTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHYT 477
Query: 182 IL 183
IL
Sbjct: 478 IL 479
>gi|217967533|ref|YP_002353039.1| polyribonucleotide nucleotidyltransferase [Dictyoglomus turgidum
DSM 6724]
gi|254782720|sp|B8E2S5.1|PNP_DICTD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|217336632|gb|ACK42425.1| Polyribonucleotide nucleotidyltransferase [Dictyoglomus turgidum
DSM 6724]
Length = 693
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 89/205 (43%), Gaps = 28/205 (13%)
Query: 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCY 61
E R DGR N+LRP++C +L R HGSA + +G ++
Sbjct: 312 EKRRVDGRRLNELRPVSCEVGVLSRVHGSALFQRG-----------------ETQVLSVV 354
Query: 62 WVGSGDTKVLAAVY--GPKAGTKKNENPEKASIEV--IWKPRTGQIGKPEKEYEIILKRT 117
+G+G+ +++ +V PK P + E + P+ +IG + + +R
Sbjct: 355 TLGAGEEQIIESVIESEPKRYIHHYNFPPFSVGEAKPLRGPKRREIG-----HGALAERA 409
Query: 118 LQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCS 175
L + T V+ +V+ +G+ ++ + +L+DAG+P+K H+A VA+
Sbjct: 410 LLPLIPKEEEFPYTIRVVSEVLSSNGSTSMASVCGSSLSLMDAGVPIKTHVAGVAMGLIK 469
Query: 176 AESGYCILDPTKLEEQKMKGFAYLV 200
+ +L + E + G + +
Sbjct: 470 EGEKFEVLTDIQGLEDALGGMDFKI 494
>gi|240279480|gb|EER42985.1| exonuclease RRP41 [Ajellomyces capsulatus H143]
Length = 265
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 67/158 (42%), Gaps = 20/158 (12%)
Query: 62 WVGSGDTKVLAAVYGPKAGTKKN-ENPEK--------------ASIEVIWKPRTGQIGKP 106
++ G+T V+ V+GP G + P + + ++ K TG G
Sbjct: 42 YLSMGNTVVICMVHGPAEGRRSEATGPAREGAVVSVAVNVAGFSGVDRKKKSATGGGGDR 101
Query: 107 EKEYEII--LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPM 164
+ ++ L+ Q I P++T S+ + V+ DG+L INA ALVDAGIPM
Sbjct: 102 QASTDLAFALRDAFQPHLHTHIYPHSTISLHVSVLSSDGSLFAACINACTLALVDAGIPM 161
Query: 165 KHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFP 202
L +C C+ P + E ++ G + P
Sbjct: 162 PGL---LCACTVGMSGRASTPAEPELTRVGGINESLDP 196
>gi|164661143|ref|XP_001731694.1| hypothetical protein MGL_0962 [Malassezia globosa CBS 7966]
gi|159105595|gb|EDP44480.1| hypothetical protein MGL_0962 [Malassezia globosa CBS 7966]
Length = 182
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
Query: 109 EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLA 168
E+ ++ TL+ + + P + +++ V DG +LP INA AL+DAGIPM
Sbjct: 32 EWANAVRSTLEPVIHTHLYPRSQVDIVLYVEQQDGGVLPAMINACTLALMDAGIPMSDYV 91
Query: 169 VAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNS 204
A+ C +LD E+ + + P +
Sbjct: 92 TAM-TCGLHGSTAMLDLNLTEQSDLPFVTVAILPRT 126
>gi|68065138|ref|XP_674553.1| exosome complex exonuclease [Plasmodium berghei strain ANKA]
gi|56493201|emb|CAH99095.1| exosome complex exonuclease rrp41, putative [Plasmodium berghei]
Length = 246
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 64/133 (48%), Gaps = 13/133 (9%)
Query: 66 GDTKVLAAVYGPKAGTKKNENPEKASI--EVIWKPRTGQIGKPEK-------EYEIILKR 116
G+TK+L+ + GP T+ + EK SI +V P + +K E ++
Sbjct: 47 GNTKILSYIQGP---TELKKTDEKCSIKCDVFLSPFNVYDKRKKKTKDNITNEISAYIRN 103
Query: 117 TLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSA 176
++I +L + N+ ++ + ++ DG + AIN AL+DAGI +K+ ++ C
Sbjct: 104 ICENIILLDLYKNSEINIFLYIIERDGGIKHAAINTCILALIDAGIAIKYF-ISACSVLY 162
Query: 177 ESGYCILDPTKLE 189
I+D +LE
Sbjct: 163 LQNKIIVDGNQLE 175
>gi|340712756|ref|XP_003394921.1| PREDICTED: exosome complex component RRP41-like isoform 2 [Bombus
terrestris]
Length = 220
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 10/96 (10%)
Query: 105 KPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPM 164
+ +E + LK +++I L I P + + ++ + DG+ ++NAA AL+DAGIP+
Sbjct: 46 RKSQERSLQLKHAMEAIIHLEIYPRSQIDIYVEALQVDGSEYCTSVNAATLALIDAGIPI 105
Query: 165 KHLAVA-----ICCCSAES-----GYCILDPTKLEE 190
K+ A+ I S+E G +LD LEE
Sbjct: 106 KNYAIGCTVTLINNPSSEDEDNTLGRGVLDANYLEE 141
>gi|313680573|ref|YP_004058312.1| polyribonucleotide nucleotidyltransferase [Oceanithermus profundus
DSM 14977]
gi|313153288|gb|ADR37139.1| polyribonucleotide nucleotidyltransferase [Oceanithermus profundus
DSM 14977]
Length = 721
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 84/192 (43%), Gaps = 35/192 (18%)
Query: 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCY 61
E RADGR P ++RP+ +L R+HGSA +++G ++
Sbjct: 323 EKKRADGRGPAEIRPIWIEVDVLPRSHGSAIFTRG-----------------ETQVLGTV 365
Query: 62 WVGSG-DTKVLAAVYGPKAGTKKNEN-------PEKASIEVIWKPRTGQIGKPEKEYEII 113
+G+G D +++ + G ++E+ P ++ EV R + + E + +
Sbjct: 366 TLGTGRDEQIIDDL-----GLDESEDFLVHYNFPPYSTGEV---KRLRGVSRREVGHGNL 417
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKH--LAVAI 171
KR L+ + T V+ V+ +G+ + A C AL+DAG+P+K +A+
Sbjct: 418 AKRALKPMLPEKDAFPYTIRVVGDVLESNGSSSMATVCAGCLALMDAGVPIKKPVAGIAM 477
Query: 172 CCCSAESGYCIL 183
E G ++
Sbjct: 478 GLVKPEEGEPVV 489
>gi|410079801|ref|XP_003957481.1| hypothetical protein KAFR_0E01920 [Kazachstania africana CBS 2517]
gi|372464067|emb|CCF58346.1| hypothetical protein KAFR_0E01920 [Kazachstania africana CBS 2517]
Length = 246
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 77/201 (38%), Gaps = 43/201 (21%)
Query: 5 RADGRNPNQLRPLACSCSI-LHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWV 63
R DGR N+LR S + H + GS+ QG
Sbjct: 13 RLDGRRWNELRKFDASINTHAHLSDGSSYLEQG--------------------------- 45
Query: 64 GSGDTKVLAAVYGPKAGTKKNE-NPEKASIEVIWK-------PRTGQIGKPEK---EYEI 112
+ K+ V GP+ +++++ + KA++ V R+ K E+ E +
Sbjct: 46 ---NNKIFTLVKGPREPSQRSQLDQSKATLNVTVNITRFSKFERSKASHKNERRTLEIQT 102
Query: 113 ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAIC 172
L RT + +L P T + I V+ DG L+ IN A +DAGI M +
Sbjct: 103 SLVRTFEKNLMLQNYPRTVIDIEIHVLQQDGGLVGSLINGITLACIDAGIAMYDYISGVS 162
Query: 173 CCSAESGYCILDPTKLEEQKM 193
++ +LD LEE M
Sbjct: 163 VGLYDT-VPLLDINSLEENAM 182
>gi|238583089|ref|XP_002390134.1| hypothetical protein MPER_10647 [Moniliophthora perniciosa FA553]
gi|215453188|gb|EEB91064.1| hypothetical protein MPER_10647 [Moniliophthora perniciosa FA553]
Length = 172
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 5/100 (5%)
Query: 105 KPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPM 164
K + E+ ++ +Q+ ++ P + + +QV+ DG +L INA AL +AGIP+
Sbjct: 12 KADANAEVNIEPVIQT----SLYPRSQIDIYVQVLQQDGGVLQACINATTLALANAGIPL 67
Query: 165 KHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNS 204
A+ S +LD T+LEE + V P S
Sbjct: 68 LDFVCAV-TGGVHSTSPLLDLTQLEENDLPNVTVAVMPRS 106
>gi|449542307|gb|EMD33286.1| hypothetical protein CERSUDRAFT_56975 [Ceriporiopsis subvermispora
B]
Length = 278
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 13/127 (10%)
Query: 60 CYWVGSGDTKVLAAVYGPKAGTKKNENPEKASI---EVIWKP-RTGQIGKPEKEYEIIL- 114
C + G T+V +V+GP+ ++++ ++ EV P TG+ + + IL
Sbjct: 49 CASIAHGLTQVSVSVFGPREAKQRSQTLHDRAVLNVEVNVLPFSTGERRRRGRADRRILE 108
Query: 115 -----KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAV 169
K T + + T+ P + + V DG LLP IN AL AG+P+
Sbjct: 109 LAASIKATFEPVVQTTLYPRAQIDIFVSVQQQDGGLLPACINGTTLALAAAGVPLLDF-- 166
Query: 170 AICCCSA 176
+C SA
Sbjct: 167 -VCAVSA 172
>gi|150021487|ref|YP_001306841.1| polynucleotide phosphorylase/polyadenylase [Thermosipho
melanesiensis BI429]
gi|187611329|sp|A6LNF5.1|PNP_THEM4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|149794008|gb|ABR31456.1| Polyribonucleotide nucleotidyltransferase [Thermosipho
melanesiensis BI429]
Length = 699
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 77/181 (42%), Gaps = 19/181 (10%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
RADGR P ++RP+ C +L R HGSA +++G +T L + +
Sbjct: 322 RADGRTPEEIRPITCEVGVLPRTHGSALFTRG----ETQSLGIVTLGAPMEEQIVDTIME 377
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICIL 124
G + + P + KP G G+ E + + +R L+++
Sbjct: 378 EGTKRFILHYNFPPFSVGE------------VKPLRGP-GRREIGHGHLAERALKAVAPD 424
Query: 125 TINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCI 182
+ V+ +++ +G+ + + AL+DAG+P+K H+A VA+ E +
Sbjct: 425 EEDFPYVVRVVSEILESNGSSSMATVCSGSLALMDAGVPIKTHVAGVAMGLIVDEENEVV 484
Query: 183 L 183
L
Sbjct: 485 L 485
>gi|384251192|gb|EIE24670.1| ribosomal protein S5 domain 2-like protein [Coccomyxa
subellipsoidea C-169]
Length = 245
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 91/231 (39%), Gaps = 45/231 (19%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P +LR L C L +A GSA + G
Sbjct: 10 RLDGRRPKELRALRCQLGPLPQADGSALFEMG---------------------------- 41
Query: 65 SGDTKVLAAVYGPKAGTKKNEN-----------PEKASIEVIWKPRTGQIGKPEKEYEII 113
+TKV+A YGPK +++ E A + R G+ + E
Sbjct: 42 --NTKVIATAYGPKVADNRSQALHNRAIVKCDYAEAAFSTGNRRQRRGRGDRKTTELAST 99
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
++ L+ +L + P V +QV+ DG +L INAA AL +AGIP++ + A
Sbjct: 100 IRSALEHTILLDLFPRAQIGVSVQVLQADGGVLGACINAAMLALANAGIPLRDMIAATSA 159
Query: 174 CSAESGYCILDPTKLEEQKMKGFAYLVFPNSI--LSVLPEGSSLVQGEPME 222
ES +LD LE L ++ + +L E S+ + EP E
Sbjct: 160 GYLES-TPLLDLNFLESTGAGPEVTLALHTNLDKVVILTEDST-IAAEPFE 208
>gi|406904143|gb|EKD46016.1| hypothetical protein ACD_69C00047G0003 [uncultured bacterium]
Length = 695
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 80/183 (43%), Gaps = 33/183 (18%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR+ +RP+ + +L R+HGSA +++G ++ + +G
Sbjct: 316 RIDGRDKKTVRPIDINLGVLPRSHGSAIFTRG-----------------ETQAFVVTTLG 358
Query: 65 S-GDTKVLAAVYGPKAGTKKN-----ENPEKASIEV--IWKPRTGQIGKPEKEYEIILKR 116
+ GD +V+ P +K+N P ++ EV + PR +IG + + KR
Sbjct: 359 TAGDAQVIDV---PAGESKENFMLHYNFPPYSTGEVGMMGSPRRREIG-----HGNLAKR 410
Query: 117 TLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSA 176
LQ++ V+ ++ +G+ ++ A +L+DAG+P+K I
Sbjct: 411 ALQAVIPSAEEFPYVLRVVSEITESNGSSSMASVCGASLSLMDAGVPIKSSVAGIAMGLI 470
Query: 177 ESG 179
+ G
Sbjct: 471 KEG 473
>gi|167519907|ref|XP_001744293.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163777379|gb|EDQ90996.1| predicted protein [Monosiga brevicollis MX1]
Length = 214
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 8/114 (7%)
Query: 66 GDTKVLAAVYGPKAGTKKNENPEKASIE--VIWKPRTGQ--IGKPEKEYEIILKRTLQSI 121
G TKV+ A YGP+ + + +E + P Q E + + L+R L ++
Sbjct: 42 GRTKVMVACYGPEEAARAGTFSDMGVLECHITRAPFAEQKRATLQETDADRGLRRDLDAM 101
Query: 122 C----ILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAI 171
+L P +T ++ ++ DDG +LP + A+ ALV+AGI ++ + AI
Sbjct: 102 IKPAILLEKYPKSTIALQATILEDDGGVLPALVMASSTALVEAGIELRDIVTAI 155
>gi|344200724|ref|YP_004785050.1| polyribonucleotide nucleotidyltransferase [Acidithiobacillus
ferrivorans SS3]
gi|343776168|gb|AEM48724.1| Polyribonucleotide nucleotidyltransferase [Acidithiobacillus
ferrivorans SS3]
Length = 692
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 75/170 (44%), Gaps = 35/170 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR+ +RP+ +L R HGSA +++G ++ +G
Sbjct: 313 RIDGRDSRTVRPITIEAGVLPRTHGSALFTRG-----------------ETQALVVATLG 355
Query: 65 S-GDTKVLAAVYGPKAGTKKNENPEKASIEVIWKP----RTGQIGKPEKEYEI----ILK 115
+ GD +++ A+ G E+ ++ + + P TG +G P K EI + K
Sbjct: 356 TKGDEQIIDALQG--------ESRDRFMLHYNFPPFSTGETGMVGSP-KRREIGHGRLAK 406
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMK 165
R + ++ + V+ +V+ +G+ + A AL+DAG+P+K
Sbjct: 407 RAIAAVLPSNSEFPYSLRVVSEVLESNGSSSMATVCGASLALMDAGVPLK 456
>gi|313115448|ref|ZP_07800916.1| polyribonucleotide nucleotidyltransferase [Faecalibacterium cf.
prausnitzii KLE1255]
gi|310622242|gb|EFQ05729.1| polyribonucleotide nucleotidyltransferase [Faecalibacterium cf.
prausnitzii KLE1255]
Length = 716
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 78/175 (44%), Gaps = 23/175 (13%)
Query: 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCY 61
E R DGR N++RPLA IL R HGS +++G QT V T+ C
Sbjct: 319 EGKRVDGRGINEIRPLAAEVGILPRVHGSGMFTRG----QTQ--------VLTT----CT 362
Query: 62 WVGSGDTKVLAAVYGPKAGTKK---NENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTL 118
G+ D +++ + + TK+ + N S+ PR+ G+ E + + +R L
Sbjct: 363 LGGTKDNQLMDDLTDEQ--TKRYIHHYNFPPYSVGEARAPRSP--GRREIGHGALAERAL 418
Query: 119 QSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
+ T + +V+ +G+ +I + AL+DAG+P+K I C
Sbjct: 419 VPVLPSLEEFPYTIRCVSEVLSSNGSTSQASICGSTLALMDAGVPIKAPVAGISC 473
>gi|407841343|gb|EKG00711.1| exosome-associated protein 4, putative,3' exoribonuclease, putative
[Trypanosoma cruzi]
Length = 229
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 69/171 (40%), Gaps = 12/171 (7%)
Query: 45 FYHFNLFVFTSKCYFCYWVGSGDTKVLAAVYGPKAGTKKNENPE-KASIEVIWKPRTGQ- 102
+ H L V +C+ V G+T+V+ AV+ P+ + + + V G
Sbjct: 15 YPHIALDVL-GQCHSSACVELGNTRVICAVHHPQQLVDEYRGSRGRVACTVRRSASAGSH 73
Query: 103 --------IGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAAC 154
+ PEK+ + L+ + + IL P V+++++ +DG + +
Sbjct: 74 AAGSAQPSVVTPEKDMSLALEGVAEEVVILEKIPQLLVEVVVEILAEDGGVWDAVATSMS 133
Query: 155 AALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYL-VFPNS 204
AALV G M L A G +LDP EE + A + V NS
Sbjct: 134 AALVSGGFEMYDLFSACGSALLSDGAVVLDPDAAEESNAQASALVCVMLNS 184
>gi|388502864|gb|AFK39498.1| unknown [Medicago truncatula]
Length = 180
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 7/73 (9%)
Query: 109 EYEIILKRTLQSICILT-INPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHL 167
E +++++T++ CILT + P + + +QV+ DG INAA AL DAGIPM L
Sbjct: 33 EISLVIRQTMEE-CILTHLMPRSQIDIYVQVLQADGGTRSACINAATLALADAGIPMLDL 91
Query: 168 AVAICCCSAESGY 180
+ CSA GY
Sbjct: 92 ---VTSCSA--GY 99
>gi|295102740|emb|CBL00285.1| polyribonucleotide nucleotidyltransferase [Faecalibacterium
prausnitzii L2-6]
Length = 714
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 78/175 (44%), Gaps = 23/175 (13%)
Query: 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCY 61
E R DGR N++RPLA IL R HGS +++G QT V T+ C
Sbjct: 319 EGKRVDGRGINEIRPLAAEVGILPRVHGSGMFTRG----QTQ--------VLTT----CT 362
Query: 62 WVGSGDTKVLAAVYGPKAGTKK---NENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTL 118
G+ D +++ + + TK+ + N S+ PR+ G+ E + + +R L
Sbjct: 363 LGGTKDNQLMDDLTDEQ--TKRYIHHYNFPPYSVGEARAPRSP--GRREIGHGALAERAL 418
Query: 119 QSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
+ T + +V+ +G+ +I + AL+DAG+P+K I C
Sbjct: 419 LPVLPSLEEFPYTIRCVSEVLSSNGSTSQASICGSTLALMDAGVPIKAPVAGISC 473
>gi|357017365|gb|AET50711.1| hypothetical protein [Eimeria tenella]
Length = 299
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 69/164 (42%), Gaps = 37/164 (22%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P ++RP+ L A GSA +V
Sbjct: 44 RRDGRLPEEVRPMHLQTLSLGSASGSA------------------------------FVS 73
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEV------IWKPRTGQIGKPEKEYEIILKRTL 118
G+TKV A++GP++ + + ++ I+V ++ + G+ +++ ++L + L
Sbjct: 74 VGNTKVYCAIFGPRSAGRSDLQ-DRGFIKVDYRGSPFFQRSSADGGETQEQLLLLLHQAL 132
Query: 119 QSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGI 162
S +L P + V + +DG L A+ A AL DAG+
Sbjct: 133 DSCVLLERYPKSVLEVSFMFLEEDGGALAAALTCAGLALADAGV 176
>gi|402592143|gb|EJW86072.1| 3' exoribonuclease [Wuchereria bancrofti]
Length = 262
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 63/136 (46%), Gaps = 13/136 (9%)
Query: 62 WVGSGDTKVLAAVYGPKAGTKKNE-NPEKASIEVIWK---------PRTGQIGKPEKEYE 111
+V G TK++ +V GPK TK + +P + I V K P + KE
Sbjct: 52 YVEFGSTKIICSVDGPKEITKSTDVDPTEGQIYVFLKNVSAESNSLPGSNSSSISNKENS 111
Query: 112 II---LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLA 168
I ++ L+SI L + V I V++DDG +L ++ A+ AL+D+GI + +
Sbjct: 112 RIRNAIESALRSIVCLELFCKAQIDVEITVLNDDGGVLAASLIASSLALIDSGIQVYDVC 171
Query: 169 VAICCCSAESGYCILD 184
VA G I+D
Sbjct: 172 VAAHIVMLTDGRIIVD 187
>gi|307109085|gb|EFN57324.1| hypothetical protein CHLNCDRAFT_21722, partial [Chlorella
variabilis]
Length = 223
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 68/157 (43%), Gaps = 13/157 (8%)
Query: 66 GDTKVLAAVYGPKAGTKKNENPEKASIE-----VIWKPRTGQIGKPEKEYEIILKRTLQS 120
G TKV+ VYGP+ ++ E+ + + R E+E L+ L++
Sbjct: 22 GHTKVMVGVYGPRQSERRVGYSEQGRVNCDVKLASFASRQRGQSAEERELSAALQTALEA 81
Query: 121 ICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGY 180
L P + V + V+ G L A AA AL DAG+ M L VA C S G
Sbjct: 82 AADLASFPKASVDVFVLVLEAGGGELGVAATAAALALADAGVEMFDL-VAACSVSRVQGS 140
Query: 181 CILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQ 217
+LDPT E + +G +L+++P S + Q
Sbjct: 141 LVLDPTADEVFREEG-------GLVLALMPTSSEVTQ 170
>gi|327399809|ref|YP_004340678.1| polyribonucleotide nucleotidyltransferase [Hippea maritima DSM
10411]
gi|327182438|gb|AEA34619.1| Polyribonucleotide nucleotidyltransferase [Hippea maritima DSM
10411]
Length = 703
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 79/189 (41%), Gaps = 35/189 (18%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +++RP+ C +L RAHGSA +++G ++ +G
Sbjct: 315 RIDGRGLDEIRPITCEVGVLPRAHGSAVFTRG-----------------ETQALVATTLG 357
Query: 65 S-GDTKVLAAVYGPKAGTKKNENPEKASIEVIWKP-------RTGQIGKPEKEYEIILKR 116
S D +++ V E E+ + + P R G G+ E + + KR
Sbjct: 358 SREDAQIIDDV--------SEEGYERFMLHYNFLPFSTGEVKRLGPPGRREIGHGNLAKR 409
Query: 117 TLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKH--LAVAICCC 174
++ + + V+ ++ +G+ + + +L+DAG+P+K VA+
Sbjct: 410 AIEPMLPSEDDFPYAIRVVSDILESNGSSSMATVCGSTLSLMDAGVPIKKPVSGVAMGLI 469
Query: 175 SAESGYCIL 183
E GY IL
Sbjct: 470 KYEGGYAIL 478
>gi|257439280|ref|ZP_05615035.1| polyribonucleotide nucleotidyltransferase [Faecalibacterium
prausnitzii A2-165]
gi|257198155|gb|EEU96439.1| polyribonucleotide nucleotidyltransferase [Faecalibacterium
prausnitzii A2-165]
Length = 714
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 78/175 (44%), Gaps = 23/175 (13%)
Query: 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCY 61
E R DGR N++RPLA IL R HGS +++G QT V T+ C
Sbjct: 319 EGKRVDGRGINEIRPLAAEVGILPRVHGSGMFTRG----QTQ--------VLTT----CT 362
Query: 62 WVGSGDTKVLAAVYGPKAGTKK---NENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTL 118
G+ D +++ + + TK+ + N S+ PR+ G+ E + + +R L
Sbjct: 363 LGGTKDNQLMDDLTDEQ--TKRYIHHYNFPPYSVGEARAPRSP--GRREIGHGALAERAL 418
Query: 119 QSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
+ T + +V+ +G+ +I + AL+DAG+P+K I C
Sbjct: 419 VPVLPSLEEFPYTIRCVSEVLSSNGSTSQASICGSTLALMDAGVPIKAPVAGISC 473
>gi|71415718|ref|XP_809916.1| exosome-associated protein 4 [Trypanosoma cruzi strain CL Brener]
gi|70874370|gb|EAN88065.1| exosome-associated protein 4, putative [Trypanosoma cruzi]
Length = 229
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 66/165 (40%), Gaps = 11/165 (6%)
Query: 45 FYHFNLFVFTSKCYFCYWVGSGDTKVLAAVYGPKAGTKKNENPE-KASIEVIWKPRTGQ- 102
+ H L V +C+ V G+T+V+ AV+ P+ + + + V G
Sbjct: 15 YPHIALDVL-GQCHSSACVELGNTRVICAVHHPQQLVDEYRGSRGRVACTVRRSASAGSH 73
Query: 103 --------IGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAAC 154
+ PEK+ + L+ + + IL P V+++++ +DG + +
Sbjct: 74 AAGSAQPSVVTPEKDMSLALEGVAEEVVILEKIPQLLVEVVVEILAEDGGVWDAVATSMS 133
Query: 155 AALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYL 199
AALV G M L A G +LDP EE + A +
Sbjct: 134 AALVSGGFEMYDLFSACGSALLSDGAVVLDPDAAEESNAQASALV 178
>gi|384086170|ref|ZP_09997345.1| polyribonucleotide nucleotidyltransferase [Acidithiobacillus
thiooxidans ATCC 19377]
Length = 692
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 75/170 (44%), Gaps = 35/170 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR+ +RP+ +L R HGSA +++G ++ +G
Sbjct: 313 RIDGRDTKTVRPITIEAGVLPRTHGSALFTRG-----------------ETQALVVATLG 355
Query: 65 S-GDTKVLAAVYGPKAGTKKNENPEKASIEVIWKP----RTGQIGKPEKEYEI----ILK 115
+ GD +++ A+ G E+ ++ + + P TG +G P K EI + K
Sbjct: 356 TKGDEQIIDALQG--------ESRDRFMLHYNFPPFSTGETGMVGSP-KRREIGHGRLAK 406
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMK 165
R + ++ + V+ +V+ +G+ + A AL+DAG+P+K
Sbjct: 407 RAVAAVLPEASEFPYSLRVVSEVLESNGSSSMATVCGASLALMDAGVPLK 456
>gi|225708764|gb|ACO10228.1| Exosome complex exonuclease MTR3 [Caligus rogercresseyi]
Length = 278
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 63/149 (42%), Gaps = 39/149 (26%)
Query: 5 RADGRNPNQL--RPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYW 62
R DG + RPL C IL ++ GSA +
Sbjct: 37 RLDGEREKDISVRPLFCEVGILTQSKGSA------------------------------Y 66
Query: 63 VGSGDTKVLAAVYGPKAGTKKNENPEKA-SIEVIWKP------RTGQIGKPEKEYEIILK 115
+ G TKVLA+V+GP+ +KK + A S+ V +K G+ E++ + L
Sbjct: 67 LERGRTKVLASVFGPREVSKKLDFSSTAGSLNVEYKEAPFASRSDGRGEAKERDVGLFLA 126
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGA 144
+TL+S L + P + V I V+ DDG+
Sbjct: 127 QTLRSTVCLHLYPKSRIDVCITVLEDDGS 155
>gi|390344519|ref|XP_785829.2| PREDICTED: exosome complex component RRP41-like, partial
[Strongylocentrotus purpuratus]
Length = 194
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 9/95 (9%)
Query: 102 QIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAG 161
Q + E + L+RT ++ + P + + +Q++ DG +NAA A+++AG
Sbjct: 39 QGDRKSTEMSLHLQRTFEATIQTHLYPRSQIDIFVQILQADGGNYCACVNAATLAIINAG 98
Query: 162 IPMKHLAVAICCCSAESGYC----ILDPTKLEEQK 192
IPMK +C CS SGY + D + LEE +
Sbjct: 99 IPMKDY---VCACS--SGYVNNTPLTDVSYLEESQ 128
>gi|407785042|ref|ZP_11132191.1| polynucleotide phosphorylase/polyadenylase [Celeribacter
baekdonensis B30]
gi|407204744|gb|EKE74725.1| polynucleotide phosphorylase/polyadenylase [Celeribacter
baekdonensis B30]
Length = 710
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 77/174 (44%), Gaps = 21/174 (12%)
Query: 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCY 61
E R DGR +Q+RP+ C +L R HGSA +++G ++
Sbjct: 315 EGKRIDGRALDQVRPIVCETGLLPRTHGSALFTRG-----------------ETQGLVVT 357
Query: 62 WVGSGDT-KVLAAVYGP-KAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQ 119
+G+GD + + A++G K+ + N S+ + R G G+ E + + R LQ
Sbjct: 358 TLGTGDDEQFIDALHGNFKSNFLLHYNFPPYSVGEVG--RVGSPGRREIGHGKLAWRALQ 415
Query: 120 SICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
++ + T ++ ++ +G+ ++ +++DAG+P+K +
Sbjct: 416 AVLPAATDFPYTIRIVSEITESNGSSSMASVCGGSLSMMDAGVPLKAAVAGVAM 469
>gi|332376931|gb|AEE63605.1| unknown [Dendroctonus ponderosae]
Length = 269
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 8/111 (7%)
Query: 62 WVGSGDTKVLAAVYGPKAGTKKNENPEKASI--EVIWKPRT------GQIGKPEKEYEII 113
++ GDTKV+ +V+ P+ + + K + E + P + Q EK+ I
Sbjct: 64 YIEIGDTKVIVSVFDPREIPNRIDYGLKGEVYCEFKYAPFSCKKRMMHQQNNEEKQSSDI 123
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPM 164
+++ L+S L PN V V+ +DG+ L AI A AL AG+PM
Sbjct: 124 MRKALESTVCLHELPNFQVDVYAMVLEEDGSALSAAIIAGGVALTLAGVPM 174
>gi|225562674|gb|EEH10953.1| exonuclease [Ajellomyces capsulatus G186AR]
Length = 292
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 59/131 (45%), Gaps = 20/131 (15%)
Query: 62 WVGSGDTKVLAAVYGPKAGTKKN-ENPEK--------------ASIEVIWKPRTGQIGKP 106
++ G+T V+ V+GP G + P + + ++ K TG G
Sbjct: 42 YLSMGNTVVICMVHGPAEGRRSEATGPAREGAVVSVAVNVAGFSGVDRKKKSATGGGGDR 101
Query: 107 EKEYEII--LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPM 164
+ ++ L+ Q I P++T S+ + V+ DG+L INA ALVDAGIPM
Sbjct: 102 QASTDLAFALRDAFQPHLHTHIYPHSTISLHVSVLSSDGSLFAACINACTLALVDAGIPM 161
Query: 165 KHLAVAICCCS 175
L +C C+
Sbjct: 162 PGL---LCACT 169
>gi|405119953|gb|AFR94724.1| exosome component Rrp41 [Cryptococcus neoformans var. grubii H99]
Length = 262
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 71/165 (43%), Gaps = 30/165 (18%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R D R P +LR + S + GS++ +QG + S VF + +
Sbjct: 15 RQDARRPYELRSTSFQLSTHPSSDGSSTATQGLTTVAVS--------VFGPREPRNRGLA 66
Query: 65 SGDTKVLAAV-----YGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQ 119
S D V++ + AG ++ + R +IG +++T +
Sbjct: 67 SHDRAVVSVEVGVVPWAAGAGARRTRGDK----------RLQEIGAA-------IRQTFE 109
Query: 120 SICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPM 164
+ + + P + ++ +QV+ DG +LP +INA AL+DAGI +
Sbjct: 110 PVIMTHLYPRSEIAIHVQVLSADGGILPTSINATTLALIDAGISL 154
>gi|312076508|ref|XP_003140893.1| hypothetical protein LOAG_05308 [Loa loa]
gi|307763947|gb|EFO23181.1| hypothetical protein LOAG_05308 [Loa loa]
Length = 264
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 63/138 (45%), Gaps = 13/138 (9%)
Query: 62 WVGSGDTKVLAAVYGPKAGTKKNE-NPEKASIEVIWKPRTGQ------------IGKPEK 108
+V G TK++ +V GPK TK + NP + + V K + + K
Sbjct: 52 YVEFGSTKIICSVDGPKEITKSADVNPTEGQVYVFLKNISTEGNAVSGSNSSSVSNKEIN 111
Query: 109 EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLA 168
++ L+SI L + V I V++DDG +L ++ A+ ALVD+GI + +
Sbjct: 112 GTRNAVESALRSIVCLELFCKAQIDVEITVLNDDGGVLAASLIASSLALVDSGIQVYDVC 171
Query: 169 VAICCCSAESGYCILDPT 186
VA G I+DP+
Sbjct: 172 VAAHIVMLTDGRIIVDPS 189
>gi|325092610|gb|EGC45920.1| exonuclease RRP41 [Ajellomyces capsulatus H88]
Length = 291
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 59/131 (45%), Gaps = 20/131 (15%)
Query: 62 WVGSGDTKVLAAVYGPKAGTKKN-ENPEK--------------ASIEVIWKPRTGQIGKP 106
++ G+T V+ V+GP G + P + + ++ K TG G
Sbjct: 42 YLSMGNTVVICMVHGPAEGRRSEATGPAREGAVVSVAVNVAGFSGVDRKKKSATGGGGDR 101
Query: 107 EKEYEII--LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPM 164
+ ++ L+ Q I P++T S+ + V+ DG+L INA ALVDAGIPM
Sbjct: 102 QASTDLAFALRDAFQPHLHTHIYPHSTISLHVSVLSSDGSLFAACINACTLALVDAGIPM 161
Query: 165 KHLAVAICCCS 175
L +C C+
Sbjct: 162 PGL---LCACT 169
>gi|321262691|ref|XP_003196064.1| 3'-to-5' phosphorolytic exoribonuclease; Ski6p [Cryptococcus gattii
WM276]
gi|317462539|gb|ADV24277.1| 3'-to-5' phosphorolytic exoribonuclease, putative; Ski6p
[Cryptococcus gattii WM276]
Length = 262
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 73/170 (42%), Gaps = 40/170 (23%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R D R P +LR + S + GS++ +QG
Sbjct: 15 RQDARRPYELRSTSFQLSTHPSSDGSSTATQGL--------------------------- 47
Query: 65 SGDTKVLAAVYGPKAGTKKN-ENPEKASIEVI-----WKP----RTGQIGKPEKEYEIIL 114
T V+ +V+GP+ ++ + ++A + V W R + K +E +
Sbjct: 48 ---TTVVVSVFGPREPRNRSLASHDRAVVSVEVGVVPWAAGAGARRTRGDKRLQEIGAAI 104
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPM 164
++T + + + + P + ++ +QV+ DG +LP +INA AL+DAGI +
Sbjct: 105 RQTFEPVIMTHLYPRSEIAIHVQVLSADGGILPTSINATTLALIDAGISL 154
>gi|154279662|ref|XP_001540644.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150412587|gb|EDN07974.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 291
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 59/131 (45%), Gaps = 20/131 (15%)
Query: 62 WVGSGDTKVLAAVYGPKAGTKKN-ENPEK--------------ASIEVIWKPRTGQIGKP 106
++ G+T V+ V+GP G + P + + ++ K TG G
Sbjct: 42 YLSMGNTVVICMVHGPAEGRRSEATGPAREGAVVSVAVNVAGFSGVDRKKKSATGGGGDR 101
Query: 107 EKEYEII--LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPM 164
+ ++ L+ Q I P++T S+ + V+ DG+L INA ALVDAGIPM
Sbjct: 102 QASTDLAFALRDAFQPHLHTHIYPHSTISLHVSVLSSDGSLFAACINACTLALVDAGIPM 161
Query: 165 KHLAVAICCCS 175
L +C C+
Sbjct: 162 PGL---LCACT 169
>gi|389585705|dbj|GAB68435.1| exosome complex exonuclease rrp41 [Plasmodium cynomolgi strain B]
Length = 231
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 67/138 (48%), Gaps = 11/138 (7%)
Query: 52 VFTSKCYFCYWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYE 111
+FT F ++ G+TK+L+ + GP T+ ++ EK SI+ K E
Sbjct: 34 IFTDADGFAFY-ELGNTKLLSYIQGP---TELKKSEEKCSIKCETKDSVTN------EIS 83
Query: 112 IILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAI 171
++ ++I +L + N+ ++ + ++ DG + AIN AL+DAGI +K+ ++
Sbjct: 84 AYIRNICENIILLDLYKNSEINIFLYIIERDGGVKHAAINTCILALIDAGIAIKYF-ISA 142
Query: 172 CCCSAESGYCILDPTKLE 189
C ++D +LE
Sbjct: 143 CSVLYLQNRILVDGNQLE 160
>gi|384499406|gb|EIE89897.1| hypothetical protein RO3G_14608 [Rhizopus delemar RA 99-880]
Length = 135
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 61/151 (40%), Gaps = 40/151 (26%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR N+LR + S+ +A GSA ++
Sbjct: 13 RVDGRRANELRKITAKTSVFSQADGSA------------------------------YIE 42
Query: 65 SGDTKVLAAVYGPKAGTKKNEN-PEKASIEVIW---------KPRTGQIGKPEKEYEIIL 114
G+TK LAAVYGP+ + + ++A I V + + + + K E +
Sbjct: 43 QGNTKCLAAVYGPREVRHRMQALSDRAIINVEFNIAPFSTSERKKRSKNDKRSLEVAAFI 102
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGAL 145
++T + + + T P + + +QV +DG +
Sbjct: 103 RQTFEPVVLTTQFPRSQIDIYLQVFQNDGGI 133
>gi|156537299|ref|XP_001606070.1| PREDICTED: exosome complex component MTR3-like [Nasonia
vitripennis]
Length = 284
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 66/175 (37%), Gaps = 38/175 (21%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R D R +LR + ++ +A GSA ++
Sbjct: 39 RVDSRKHKELRKMFIKLGVVSQAKGSA------------------------------YIE 68
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWK-------PRTG-QIGKPEKEYEIILKR 116
G TKV+ + + P+ K + I +K R G Q EKEY +I++R
Sbjct: 69 MGQTKVICSAFDPREIPNKTSYSTQGEIFCEFKFASFATCKRKGHQQDTEEKEYSLIMQR 128
Query: 117 TLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAI 171
L+ PN V V+ + G+ L AI A AL +A +PM + A+
Sbjct: 129 ALEPAVCRHEFPNFQVDVYALVLDNGGSALGAAIMGASLALANASVPMFGIVTAV 183
>gi|291296202|ref|YP_003507600.1| 3' exoribonuclease [Meiothermus ruber DSM 1279]
gi|290471161|gb|ADD28580.1| 3' exoribonuclease [Meiothermus ruber DSM 1279]
Length = 714
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 86/199 (43%), Gaps = 34/199 (17%)
Query: 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCY 61
E RADGR P Q+RP+ ++L + HGSA +S+G ++
Sbjct: 322 ENKRADGRTPTQVRPIWIESNVLPKTHGSAIFSRG-----------------ETQVLGVV 364
Query: 62 WVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKP-RTGQ------IGKPEKEYEIIL 114
+G+G L G + E+P + + P TG+ + + E + +
Sbjct: 365 TLGTGRDAQLVDDLG-----IETEDP--FLVHYNFPPYSTGEVRRLRGVSRREVGHGNLA 417
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPM-KHLA-VAIC 172
KR L+++ T V+ V+ +G+ + A C AL+DAG+P+ KH+A VA+
Sbjct: 418 KRGLRAVLPSREEFPYTIRVVGDVLESNGSSSMATVCAGCLALLDAGVPLKKHVAGVAMG 477
Query: 173 CC-SAESGYCILDPTKLEE 190
E + D LE+
Sbjct: 478 LVKEGEQAVVLTDILGLED 496
>gi|374314854|ref|YP_005061282.1| polyribonucleotide nucleotidyltransferase [Sphaerochaeta pleomorpha
str. Grapes]
gi|359350498|gb|AEV28272.1| polyribonucleotide nucleotidyltransferase [Sphaerochaeta pleomorpha
str. Grapes]
Length = 701
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQG 36
R DGRN Q+RP+ C +L RAHGSA +++G
Sbjct: 317 RTDGRNVEQIRPITCEVGVLARAHGSALFTRG 348
>gi|302039398|ref|YP_003799720.1| polyribonucleotide nucleotidyltransferase [Candidatus Nitrospira
defluvii]
gi|300607462|emb|CBK43795.1| Polyribonucleotide nucleotidyltransferase [Candidatus Nitrospira
defluvii]
Length = 705
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQG 36
RADGR P +RP+ C +L RAHGSA +++G
Sbjct: 312 RADGRGPADIRPITCEVGVLPRAHGSAVFTRG 343
>gi|206901853|ref|YP_002250868.1| polyribonucleotide nucleotidyltransferase [Dictyoglomus
thermophilum H-6-12]
gi|254782719|sp|B5YEB0.1|PNP_DICT6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|206740956|gb|ACI20014.1| polyribonucleotide nucleotidyltransferase [Dictyoglomus
thermophilum H-6-12]
Length = 693
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 89/205 (43%), Gaps = 28/205 (13%)
Query: 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCY 61
E R DGR N++RP++C +L R HGSA + +G ++
Sbjct: 312 EKRRVDGRKLNEIRPVSCEVGVLKRVHGSALFQRG-----------------ETQVLSVV 354
Query: 62 WVGSGDTKVLAAVY--GPKAGTKKNENPEKASIEV--IWKPRTGQIGKPEKEYEIILKRT 117
+G+G+ +++ +V PK P + E + P+ +IG + + +R
Sbjct: 355 TLGAGEEQIIESVIESEPKRYIHHYNFPPFSVGEAKPLRGPKRREIG-----HGALAERA 409
Query: 118 LQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCS 175
L + T V+ +V+ +G+ ++ + +L+DAG+P+K H+A VA+
Sbjct: 410 LLPLIPKEEEFPYTIRVVSEVLSSNGSTSMASVCGSSLSLMDAGVPIKTHVAGVAMGLIK 469
Query: 176 AESGYCILDPTKLEEQKMKGFAYLV 200
+ +L + E + G + +
Sbjct: 470 EGDRFEVLTDIQGLEDALGGMDFKI 494
>gi|444321144|ref|XP_004181228.1| hypothetical protein TBLA_0F01670 [Tetrapisispora blattae CBS 6284]
gi|387514272|emb|CCH61709.1| hypothetical protein TBLA_0F01670 [Tetrapisispora blattae CBS 6284]
Length = 225
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 82/214 (38%), Gaps = 23/214 (10%)
Query: 62 WVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSI 121
+ S T V+ V GP + E P + ++E+I +P TG EK E L+ L I
Sbjct: 19 QLTSQSTNVICGVTGPIEPKPRQELPNELALEIIVRPATGVSNTREKLLEDRLRGVLTPI 78
Query: 122 CILTINPNTTTSVIIQVVHDDGAL--------LPCAINAACAALVDAGIPMKHLAVAICC 173
+ P + Q++ D G L C IN++ AL+DAGI + +I
Sbjct: 79 INRNLYPRQLCQITCQIL-DSGESDEYFSQKELACCINSSFLALIDAGIALNSTVASIVL 137
Query: 174 CSAESG--YCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTH 231
+ +PT + + K L +V + ++ +
Sbjct: 138 AIMNDAEETIVTNPTNEQLLESKSVHILAL------------EIVNESKLIKNVLLLDSL 185
Query: 232 GAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKL 265
G + F LE G + +S LR+ +Q ++
Sbjct: 186 GDFTETQLFKILEIGEKSCVDISISLRKIIQDRV 219
>gi|403220758|dbj|BAM38891.1| exosome complex exonuclease rrp41 [Theileria orientalis strain
Shintoku]
Length = 254
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 90/209 (43%), Gaps = 29/209 (13%)
Query: 66 GDTKVLAAVYGPKAGTKKNEN-----PEKASI--EVIW----KPRTGQIGKPEKEYEIIL 114
G KV V GP+ + ++N E+ I E++ + + Q + K+ + +
Sbjct: 49 GLNKVQVLVKGPQEDPRSSKNTYGIAEERIDIRCEIVMATEKRVKNSQNERVIKDLSLSV 108
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
K T Q + I + +V + ++ DG++ +NA ALVDAG+ +K L +
Sbjct: 109 KSTYQEMIISHYYKGCSLNVFVNIIEYDGSIKSTVLNAVGVALVDAGVAIKDLVSSSTVI 168
Query: 175 SAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAM 234
S +S + DP ++E L ++L V E S+ II +
Sbjct: 169 SLDS-IILTDPNQME---------LKASTAVLCVAVESST--------DKIIYMDYKSKI 210
Query: 235 SVDDYFHCLERGRAASAKLSDFLRRSLQS 263
+++ +E AAS K +D+ R L++
Sbjct: 211 HLEEINTMVEAAFAASKKFTDYAREVLRN 239
>gi|156086764|ref|XP_001610789.1| hypothetical protein [Babesia bovis T2Bo]
gi|154798042|gb|EDO07221.1| hypothetical protein BBOV_IV008670 [Babesia bovis]
Length = 250
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 66/146 (45%), Gaps = 11/146 (7%)
Query: 68 TKVLAAVYGPKAGTKKNENP----EKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICI 123
T V++ +Y + KN N + + EV +P G + + YE +L + +QSI
Sbjct: 49 TSVISLIY--FSADNKNRNTVGSYHRPTFEVYIRPAVGPVRGYIRGYECMLLKCMQSIID 106
Query: 124 LTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAI---CCCSAESGY 180
T S IQ++ D LL +NA +LV A +P++ + AI S ES
Sbjct: 107 GTSLGRVLVSARIQILEDGSGLLATCMNALIISLVVAALPLREIPHAIQFGITKSLESDS 166
Query: 181 CILDPT--KLEEQKMKGFAYLVFPNS 204
I++P+ ++ Q L PNS
Sbjct: 167 VIVEPSSEEIRTQCSTAVTMLCTPNS 192
>gi|374850064|dbj|BAL53062.1| polynucleotide phosphorylase/polyadenylase, partial [uncultured
Thermus/Deinococcus group bacterium]
Length = 537
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 73/183 (39%), Gaps = 55/183 (30%)
Query: 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCY 61
E RADGR P LRP+ +L RAHGSA VFT
Sbjct: 325 EGKRADGRGPKDLRPIWIEVDVLPRAHGSA--------------------VFT------- 357
Query: 62 WVGSGDTKVLAAVYGPKAGTKKNEN-------------------PEKASIEVIWKPRTGQ 102
G+T+VL V GT ++E P ++ EV R
Sbjct: 358 ---RGETQVLGTV---TLGTGRDEQIIDDLGIDETDPFLVHYNFPPFSTGEV---KRLRG 408
Query: 103 IGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGI 162
+ + E + + KR L+++ + T V+ V+ +G+ + A C AL+DAG+
Sbjct: 409 VSRREVGHGNLAKRALKAVMPKEEDFPYTVRVVGDVLESNGSSSMATVCAGCLALMDAGV 468
Query: 163 PMK 165
P++
Sbjct: 469 PIR 471
>gi|124808870|ref|XP_001348430.1| exosome complex exonuclease rrp41, putative [Plasmodium falciparum
3D7]
gi|23497324|gb|AAN36869.1|AE014820_19 exosome complex exonuclease rrp41, putative [Plasmodium falciparum
3D7]
Length = 246
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 37/172 (21%), Positives = 64/172 (37%), Gaps = 33/172 (19%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR ++ R + S G I F F +
Sbjct: 13 RIDGRKNDECRLI------------KISLGNGNELIDVDGFSFFEI-------------- 46
Query: 65 SGDTKVLAAVYGPKAGTKKNE------NPEKASIEVIWKPRTGQIGKPEKEYEIILKRTL 118
G+TK+ A + GP + +E N + ++ K R +E ++
Sbjct: 47 -GNTKLFAYIQGPNEYRRPDEKCLVKCNVFLSPFNILEKKRKKSKDNVTREISSYIRNIC 105
Query: 119 QSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVA 170
I +L + N+ ++ + ++ DG L A+N AL+DAGI +K+ A
Sbjct: 106 NHIILLDLYKNSEINIFLYIIERDGGLKAAAVNTCILALIDAGIAIKYFISA 157
>gi|328777663|ref|XP_395806.4| PREDICTED: exosome complex exonuclease RRP41-like isoform 2 [Apis
mellifera]
Length = 210
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 54/110 (49%), Gaps = 16/110 (14%)
Query: 61 YWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQS 120
+W+ D + AV+ +G +K KPR + +E + LK +++
Sbjct: 13 FWLQYMDL-ISMAVFSLSSGERKR------------KPRGD---RKSQERSLQLKHAMEA 56
Query: 121 ICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVA 170
I L + P + + ++ + DG+ ++NAA AL+DAGIP+K+ A+
Sbjct: 57 IIHLELYPRSQIDIYVEALQVDGSEYCASVNAATLALIDAGIPIKNYAIG 106
>gi|407401878|gb|EKF29006.1| exosome-associated protein 4, putative,3' exoribonuclease, putative
[Trypanosoma cruzi marinkellei]
Length = 229
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 70/171 (40%), Gaps = 12/171 (7%)
Query: 45 FYHFNLFVFTSKCYFCYWVGSGDTKVLAAVYGPKAGT---KKNENPEKASIEVIWKPRTG 101
+ H L V +C+ V G+T+V+ AV+ P+ + N +++ +
Sbjct: 15 YPHIALDVL-GQCHSSACVELGNTRVICAVHHPQQLVDEYRGNRGHVACTVQRCASAGSH 73
Query: 102 QIGK-------PEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAAC 154
G PEK+ + L+ + + IL P V+++++ +DG + +
Sbjct: 74 AAGSAQRSVVTPEKDMSLALEGVAEEVVILEKIPQLLVEVVVEILAEDGGVWDAVATSMS 133
Query: 155 AALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYL-VFPNS 204
AALV G M + A G +LDP EE + A + V NS
Sbjct: 134 AALVSGGFEMYDVFSACSSALLSDGAVVLDPDAAEESNAQASALVCVMLNS 184
>gi|381179449|ref|ZP_09888301.1| polyribonucleotide nucleotidyltransferase [Treponema saccharophilum
DSM 2985]
gi|380768623|gb|EIC02610.1| polyribonucleotide nucleotidyltransferase [Treponema saccharophilum
DSM 2985]
Length = 700
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 73/174 (41%), Gaps = 30/174 (17%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +++RP+ C ++L R HGSA +++G T C
Sbjct: 315 RIDGRKCDEIRPITCEVNVLPRPHGSALFTRG----------------ETQSLAVCTLGT 358
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRT-GQI-----GKPEKEYEIILKRTL 118
+ D ++L + G E E + + P + G++ G+ E + + +R+L
Sbjct: 359 AMDAQILDDIDG--------ERSENFILHYNFPPYSVGEVGRLTTGRREIGHGNLARRSL 410
Query: 119 QSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAIC 172
+ T V+ +++ +G+ + C AL+ AG+PMK + I
Sbjct: 411 APMIPSMEEFPYTVRVVSEIMESNGSSSQASTCGGCLALLAAGVPMKKMVAGIA 464
>gi|367019368|ref|XP_003658969.1| hypothetical protein MYCTH_2295436 [Myceliophthora thermophila ATCC
42464]
gi|347006236|gb|AEO53724.1| hypothetical protein MYCTH_2295436 [Myceliophthora thermophila ATCC
42464]
Length = 279
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 51/115 (44%), Gaps = 9/115 (7%)
Query: 90 ASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCA 149
A + + R G+ K E + L + + P++ ++ + V+ DG+LL
Sbjct: 94 AGFSSVDRKRHGRNDKRTLELASTVANALAASLHTHLFPHSQINISLHVLSQDGSLLAAL 153
Query: 150 INAACAALVDAGIPMKHLAVAICCCSAESGYC--------ILDPTKLEEQKMKGF 196
INAA A VDAGIPM A C + S Y +LD EEQ++ G
Sbjct: 154 INAATLACVDAGIPMTDYVTA-CTAGSTSTYAANDEGADPLLDLNHQEEQELPGL 207
>gi|325971218|ref|YP_004247409.1| polyribonucleotide nucleotidyltransferase [Sphaerochaeta globus
str. Buddy]
gi|324026456|gb|ADY13215.1| Polyribonucleotide nucleotidyltransferase [Sphaerochaeta globus
str. Buddy]
Length = 702
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 86/206 (41%), Gaps = 32/206 (15%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR+ +Q+RP+ C +L R HGSA +++G +T L + + F G
Sbjct: 316 RTDGRSVDQIRPITCEVGLLDRTHGSALFTRG----ETQALAVTTLGTASDEQMFDTIDG 371
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICIL 124
Y N S+ + T G+ E + + +R L++I
Sbjct: 372 EKSFSSFMLHY----------NFPPYSVGECGRLST---GRREIGHGHLAQRALEAIV-- 416
Query: 125 TINPNT-----TTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKH----LAVAICCCS 175
PN T V+ +++ +G+ ++ C +L+DAG+P+K +A+ +
Sbjct: 417 ---PNKESFPYTVRVVSEIMESNGSSSMASVCGGCLSLMDAGVPIKKPVAGIAMGLITEG 473
Query: 176 AE-SGYCILDPTKLEEQKMKGFAYLV 200
A+ S Y +L EE + + V
Sbjct: 474 ADYSKYVVLSDILGEEDHLGDMDFKV 499
>gi|126726062|ref|ZP_01741904.1| polynucleotide phosphorylase/polyadenylase [Rhodobacterales
bacterium HTCC2150]
gi|126705266|gb|EBA04357.1| polynucleotide phosphorylase/polyadenylase [Rhodobacterales
bacterium HTCC2150]
Length = 710
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 80/184 (43%), Gaps = 24/184 (13%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR+ + +RP+ IL R HGSA +++G ++ +G
Sbjct: 318 RIDGRDTSTIRPIVSETGILPRTHGSALFTRG-----------------ETQGLVVTTLG 360
Query: 65 SGDT-KVLAAVYGP-KAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSIC 122
+GD +++ A++G K+ + N S+ + R G G+ E + + R LQ++
Sbjct: 361 TGDDEQMIDALHGTYKSNFMLHYNFPPYSVGEVG--RFGFTGRREIGHGKLAWRALQAVL 418
Query: 123 ILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAIC---CCSAESG 179
+ T ++ ++ +G+ ++ A++DAG+P+K + +
Sbjct: 419 PAATDFPYTIRLVSEITESNGSSSMASVCGGSLAMMDAGVPLKSAVAGVAMGLILEDDGS 478
Query: 180 YCIL 183
Y IL
Sbjct: 479 YAIL 482
>gi|392406972|ref|YP_006443580.1| polyribonucleotide nucleotidyltransferase [Anaerobaculum mobile DSM
13181]
gi|390620108|gb|AFM21255.1| polyribonucleotide nucleotidyltransferase [Anaerobaculum mobile DSM
13181]
Length = 737
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 80/186 (43%), Gaps = 37/186 (19%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
RADGR ++LRP+ C L R HGSA +++G V T+ +
Sbjct: 314 RADGRAMDELRPITCEVGFLPRVHGSAVFTRG----------ETQALVVTT-----LGMA 358
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKP-RTGQI------GKPEKEYEIILKRT 117
D ++L G K +E P++ + + P G++ G+ E + + +R
Sbjct: 359 GEDEQIL-------DGLKLDEPPKRFMLHYNFPPFSVGEVRPMRGPGRREIGHGALAERA 411
Query: 118 LQSICILTINPNTTTSVIIQVVHD----DGALLPCAINAACAALVDAGIPMKHLAVAICC 173
++ + I T II+VV D +G+ ++ A +L+DAG+P++ I
Sbjct: 412 VKPL----IPSETEFPYIIRVVSDILESNGSSSMASVCGASLSLMDAGVPIRKSVAGIAM 467
Query: 174 CSAESG 179
+ G
Sbjct: 468 GLIKEG 473
>gi|281412875|ref|YP_003346954.1| polyribonucleotide nucleotidyltransferase [Thermotoga naphthophila
RKU-10]
gi|281373978|gb|ADA67540.1| polyribonucleotide nucleotidyltransferase [Thermotoga naphthophila
RKU-10]
Length = 708
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 77/181 (42%), Gaps = 19/181 (10%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
RADGR P ++RP++C + R HGSA +++G +T L +
Sbjct: 317 RADGRKPTEIRPISCEVGLFPRTHGSALFTRG----ETQSLGIVTLGAPMDVQIIDTLLE 372
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICIL 124
G + + P T ++ + P +IG + + +R L++I
Sbjct: 373 EGVKRFMLHYNFPPFCT--------GEVKPLRGPSRREIG-----HGHLAERALKNILPP 419
Query: 125 TINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPM-KHLA-VAICCCSAESGYCI 182
T V+ +++ +G+ + + AL+DAG+P+ KH+A +A+ E I
Sbjct: 420 EEEFPYTIRVVSEILESNGSSSMATVCSGSLALMDAGVPIKKHVAGIAMGLILEEDAEII 479
Query: 183 L 183
L
Sbjct: 480 L 480
>gi|289524415|ref|ZP_06441269.1| polyribonucleotide nucleotidyltransferase, partial [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
gi|289502345|gb|EFD23509.1| polyribonucleotide nucleotidyltransferase [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
Length = 122
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 26/32 (81%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQG 36
RADGR ++LRP++C S+L RAHGSA +++G
Sbjct: 47 RADGRAMDELRPISCEVSLLPRAHGSAVFTRG 78
>gi|260425775|ref|ZP_05779755.1| polyribonucleotide nucleotidyltransferase [Citreicella sp. SE45]
gi|260423715|gb|EEX16965.1| polyribonucleotide nucleotidyltransferase [Citreicella sp. SE45]
Length = 716
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 84/184 (45%), Gaps = 24/184 (13%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +Q+RP+ S+L R HGS+ +++G ++ +G
Sbjct: 318 RIDGRALDQVRPIVSETSVLPRTHGSSLFTRG-----------------ETQALVVTTLG 360
Query: 65 SGDT-KVLAAVYGP-KAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSIC 122
+GD +++ A++G ++ + N S+ + R G G+ E + + R LQ++
Sbjct: 361 TGDDEQIIDALHGNFRSNFLLHYNFPPYSVGEVG--RVGSPGRREIGHGKLAWRALQAVL 418
Query: 123 ILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKH--LAVAICCCSAESG- 179
+ T V+ ++ +G+ ++ +++DAG+P+K VA+ + G
Sbjct: 419 PAPTDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLVLEDGGE 478
Query: 180 YCIL 183
Y +L
Sbjct: 479 YAVL 482
>gi|91789120|ref|YP_550072.1| polynucleotide phosphorylase/polyadenylase [Polaromonas sp. JS666]
gi|123355467|sp|Q127W8.1|PNP_POLSJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|91698345|gb|ABE45174.1| Polyribonucleotide nucleotidyltransferase [Polaromonas sp. JS666]
Length = 707
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 77/185 (41%), Gaps = 27/185 (14%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR+ +R + S+L R HGSA +++G +T L G
Sbjct: 317 RIDGRDTRTVRAIEIRNSVLPRTHGSALFTRG----ETQALVVTTLGTERDAQRIDALSG 372
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEI----ILKRTLQS 120
+ + + P T + TG++G P K EI + KR L +
Sbjct: 373 DYEDRFMLHYNMPPFATGE----------------TGRVGSP-KRREIGHGRLAKRALIA 415
Query: 121 ICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAES 178
+ T V+ ++ +G+ ++ C +L+DAG+PMK H+A +A+ E+
Sbjct: 416 VLPTKEEFPYTMRVVSEITESNGSSSMASVCGGCLSLMDAGVPMKAHVAGIAMGLIKEEN 475
Query: 179 GYCIL 183
+ +L
Sbjct: 476 RFAVL 480
>gi|340924044|gb|EGS18947.1| hypothetical protein CTHT_0055610 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 284
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 9/105 (8%)
Query: 97 KPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAA 156
+ R G+ K E + + L + + P++ ++ + V+ DG+LL INAA A
Sbjct: 106 RKRHGRNDKRIIEMQSTVANALSASLHTHLFPHSQITISLHVLSQDGSLLAALINAATLA 165
Query: 157 LVDAGIPMKHLAVAICCCSAESGYC--------ILDPTKLEEQKM 193
VDAGIPM VA C + S Y +LD EEQ++
Sbjct: 166 CVDAGIPMTDYVVA-CTAGSTSTYAANDENADPLLDLNHQEEQEL 209
>gi|320450042|ref|YP_004202138.1| polyribonucleotide nucleotidyltransferase [Thermus scotoductus
SA-01]
gi|320150211|gb|ADW21589.1| polyribonucleotide nucleotidyltransferase [Thermus scotoductus
SA-01]
Length = 714
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 74/172 (43%), Gaps = 33/172 (19%)
Query: 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCY 61
E RADGR P LRP+ +L R HGSA +++G ++
Sbjct: 325 EGKRADGRTPKDLRPIWIEVDVLPRTHGSAVFTRG-----------------ETQVLGTV 367
Query: 62 WVGSG-DTKVLAAVYGPKAGTKKNEN-------PEKASIEVIWKPRTGQIGKPEKEYEII 113
+G+G D +++ + G + E P ++ EV R + + E + +
Sbjct: 368 TLGTGRDEQIIDDL-----GIDETEKFLVHYNFPPFSTGEV---KRLRGVSRREIGHGNL 419
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMK 165
KR L+++ T V+ V+ +G+ + A C AL+DAG+P+K
Sbjct: 420 AKRALKAVLPPEEAFPYTIRVVGDVLESNGSSSMATVCAGCLALMDAGVPLK 471
>gi|410697463|gb|AFV76531.1| polyribonucleotide nucleotidyltransferase [Thermus oshimai JL-2]
Length = 714
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 71/169 (42%), Gaps = 17/169 (10%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
RADGR P LRP+ +L RAHGSA +++G +T L + +G
Sbjct: 328 RADGRGPKDLRPIWIEVDVLPRAHGSAIFTRG----ETQVLGTVTLGTGRDE-QIIDDLG 382
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICIL 124
+T Y P ++ EV R + + E + + KR L+++
Sbjct: 383 IDETDPFLVHYN---------FPPFSTGEV---KRLRGVSRREVGHGNLAKRALRAVLPK 430
Query: 125 TINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
+ T V+ V+ +G+ + A C AL+DAG+P++ +
Sbjct: 431 EEDFPYTIRVVGDVLESNGSSSMATVCAGCLALMDAGVPIRRPVAGVAM 479
>gi|302756855|ref|XP_002961851.1| hypothetical protein SELMODRAFT_77425 [Selaginella moellendorffii]
gi|300170510|gb|EFJ37111.1| hypothetical protein SELMODRAFT_77425 [Selaginella moellendorffii]
Length = 808
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 27/32 (84%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQG 36
R+DGR + +RP++CSC++L RAHGSA +++G
Sbjct: 420 RSDGRGISDVRPISCSCNLLPRAHGSAIFTRG 451
>gi|221060204|ref|XP_002260747.1| exosome complex exonuclease rrp41 homolog [Plasmodium knowlesi
strain H]
gi|193810821|emb|CAQ42719.1| exosome complex exonuclease rrp41 homolog,putative [Plasmodium
knowlesi strain H]
Length = 246
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 69/147 (46%), Gaps = 14/147 (9%)
Query: 52 VFTSKCYFCYWVGSGDTKVLAAVYGPKAGTKKNENPEKASI--EVIWKP-------RTGQ 102
+FT F ++ G+TK+L+ + GP T+ ++ EK SI EV P +
Sbjct: 34 IFTDADGFAFY-EIGNTKLLSYIQGP---TELKKSEEKCSIKCEVFLSPFNVYEKKKKKT 89
Query: 103 IGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGI 162
E ++ ++I +L + N+ ++ + ++ DG + AIN AL+DAGI
Sbjct: 90 KDSVTNEISAYIRNICENIILLDLYKNSEINIFLYIIERDGGVKHAAINTCILALIDAGI 149
Query: 163 PMKHLAVAICCCSAESGYCILDPTKLE 189
+K+ ++ C ++D +LE
Sbjct: 150 AIKYF-ISACSVLYLQNRILVDGNQLE 175
>gi|396476681|ref|XP_003840091.1| hypothetical protein LEMA_P108770.1 [Leptosphaeria maculans JN3]
gi|312216662|emb|CBX96612.1| hypothetical protein LEMA_P108770.1 [Leptosphaeria maculans JN3]
Length = 301
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 69/142 (48%), Gaps = 18/142 (12%)
Query: 70 VLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKP-EKEYEIILKRTLQSICILTINP 128
++ AV GP +++E PE+A+IEV +P G +G P E+ E +L T+ SI + + P
Sbjct: 65 IIGAVNGPIEVQRRDEMPEEAAIEVNVRPAAG-VGSPKERHLETLLHNTIHSIILARLIP 123
Query: 129 NTTTSVIIQV-----------VHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC--- 174
T + +Q+ V+ ++LP ++ A AL+ A IP+ ++
Sbjct: 124 RTLVQITLQIRSLPEVESSTGVNTSLSILPHLLHTALLALLSASIPLSTTFTSVIIAIPS 183
Query: 175 --SAESGYCILDPTKLEEQKMK 194
S+ S ++ PT E + K
Sbjct: 184 SPSSTSANFLIQPTANELLRAK 205
>gi|82793240|ref|XP_727962.1| exonuclease RRP41 [Plasmodium yoelii yoelii 17XNL]
gi|23484066|gb|EAA19527.1| exonuclease RRP41, putative [Plasmodium yoelii yoelii]
Length = 218
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 64/133 (48%), Gaps = 13/133 (9%)
Query: 66 GDTKVLAAVYGPKAGTKKNENPEKASI--EVIWKPRTGQIGKPEK-------EYEIILKR 116
G+TK+L+ + GP T+ + +K SI +V P + +K E ++
Sbjct: 19 GNTKILSYIQGP---TELKKTDDKCSIKCDVFLSPFNVYDKRKKKTKDNITNEISAYIRN 75
Query: 117 TLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSA 176
++I +L + N+ ++ + ++ DG + AIN AL+DAGI +K+ ++ C
Sbjct: 76 ICENIILLDLYKNSEINIFLYIIERDGGIKHAAINTCILALIDAGIAIKYF-ISACSVLY 134
Query: 177 ESGYCILDPTKLE 189
I+D +LE
Sbjct: 135 LQNKIIVDGNQLE 147
>gi|156102006|ref|XP_001616696.1| exosome complex exonuclease rrp41 [Plasmodium vivax Sal-1]
gi|148805570|gb|EDL46969.1| exosome complex exonuclease rrp41, putative [Plasmodium vivax]
Length = 246
Score = 45.4 bits (106), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 69/147 (46%), Gaps = 14/147 (9%)
Query: 52 VFTSKCYFCYWVGSGDTKVLAAVYGPKAGTKKNENPEKASI--EVIWKP-------RTGQ 102
+FT F ++ G+TK+L+ + GP T+ ++ EK SI EV P +
Sbjct: 34 IFTDADGFAFY-EIGNTKLLSYIQGP---TELKKSEEKCSIKCEVFLSPFNVYEKKKKKT 89
Query: 103 IGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGI 162
E ++ ++I +L + N+ ++ + ++ DG + AIN AL+DAGI
Sbjct: 90 KDSVTNEISAYIRNICENIILLDLYKNSEINIFLYIIERDGGVKHAAINTCILALIDAGI 149
Query: 163 PMKHLAVAICCCSAESGYCILDPTKLE 189
+K+ ++ C ++D +LE
Sbjct: 150 AIKYF-ISACSVLFLQNRILVDGNQLE 175
>gi|315051732|ref|XP_003175240.1| exosome complex exonuclease RRP41 [Arthroderma gypseum CBS 118893]
gi|311340555|gb|EFQ99757.1| exosome complex exonuclease RRP41 [Arthroderma gypseum CBS 118893]
Length = 278
Score = 45.4 bits (106), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 69/177 (38%), Gaps = 48/177 (27%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR N+LR L S + GS+ ++
Sbjct: 15 RLDGRRWNELRLLQAQISTNPASSGSS------------------------------YLS 44
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKAS--IEVIW------------KPRTGQIGKPEK-- 108
G+T VL V+GP G K++E A I V+ K TG G +
Sbjct: 45 MGNTAVLCTVHGPAEG-KRSETAGAAGAVINVVVNLAGFANVDRKKKSATGSGGGDRQAT 103
Query: 109 -EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPM 164
E +L+ Q + P +T S+ + V+ DG+L +NA ALVDAGIPM
Sbjct: 104 TELANLLRDAFQPHIHAHLYPRSTISIHVSVLSSDGSLFAACLNACTLALVDAGIPM 160
>gi|399216737|emb|CCF73424.1| unnamed protein product [Babesia microti strain RI]
Length = 256
Score = 45.4 bits (106), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 78/198 (39%), Gaps = 44/198 (22%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR N+ R + S + GSAS QG
Sbjct: 13 RLDGRLCNETRNITVSHGEYATSDGSASIKQGL--------------------------- 45
Query: 65 SGDTKVLAAVYGPKAGT--KKNENPEKASIEV-----IWKPRTGQIGKPEK------EYE 111
T ++ V GP T K+ AS+ + I + I + K E
Sbjct: 46 ---THIIVLVKGPSDSTYVKQANQTNFASVLINCDINISNNLSTDIRRGTKLDIITAEIS 102
Query: 112 IILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAI 171
+++K+ +SI I+ ++ + + ++++ DG L IN AL+DAG+ +K L +
Sbjct: 103 LLIKKVFKSIIIVPLSKRSQITFSVEILDCDGCLKSTIINCCTLALIDAGVAVKSLVFSS 162
Query: 172 CCCSAESGYCILDPTKLE 189
C + + DPT+LE
Sbjct: 163 SVCYLDK-IVLADPTQLE 179
>gi|302798082|ref|XP_002980801.1| hypothetical protein SELMODRAFT_113341 [Selaginella moellendorffii]
gi|300151340|gb|EFJ17986.1| hypothetical protein SELMODRAFT_113341 [Selaginella moellendorffii]
Length = 806
Score = 45.4 bits (106), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 27/32 (84%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQG 36
R+DGR + +RP++CSC++L RAHGSA +++G
Sbjct: 420 RSDGRGISDVRPISCSCNLLPRAHGSAIFTRG 451
>gi|255569434|ref|XP_002525684.1| polyribonucleotide nucleotidyltransferase, putative [Ricinus
communis]
gi|223534984|gb|EEF36667.1| polyribonucleotide nucleotidyltransferase, putative [Ricinus
communis]
Length = 948
Score = 45.4 bits (106), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 76/175 (43%), Gaps = 44/175 (25%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R+DGRN + +RP+ C +L RAHGSA +++
Sbjct: 450 RSDGRNADGIRPINSRCGLLPRAHGSALFTR----------------------------- 480
Query: 65 SGDTKVLA-AVYGPKAGTKKNENP------EKASIEVIWKPRT----GQIGKPEKE---Y 110
G+T+ LA A G K +K +N ++ ++ + P + G++G P + +
Sbjct: 481 -GETQSLAVATLGDKQMAQKVDNLVDVDEFKRFYLQYSFPPSSVGEVGRMGAPSRREIGH 539
Query: 111 EIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMK 165
++ +R L+ I + T V + +G+ ++ C AL DAG+P+K
Sbjct: 540 GMLAERALEPILPSEADFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPVK 594
>gi|412985413|emb|CCO18859.1| exosome complex exonuclease RRP41 [Bathycoccus prasinos]
Length = 288
Score = 45.4 bits (106), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 83/193 (43%), Gaps = 16/193 (8%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFY-----HFNLFVFTSKCYF 59
R DGR PN+ R +C+ A+ S S S F F QT+ H +L T
Sbjct: 10 RNDGRRPNECRHTSCAFENPISAN-SCSGSAEFTFGQTTAVAAVFGPHSSLSTSTIDSLS 68
Query: 60 CYWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQ 119
+ ++ +A +G A KK A+ + + + + ++E IL+
Sbjct: 69 IERLKVT-VEITSAAFGMDAIPKK--RATNAATLMKSSKSSRKNKELAVKFEQILR---- 121
Query: 120 SICILTIN-PNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAES 178
CI P + V ++DDG+ N ALVDAGIPM + VA+C +
Sbjct: 122 -CCIDAKRYPRSEVYVSAATINDDGSASAALFNGIVLALVDAGIPMLDVFVAVCATRLD- 179
Query: 179 GYCILDPTKLEEQ 191
G +LD ++EE+
Sbjct: 180 GETLLDQNEVEER 192
>gi|154273881|ref|XP_001537792.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150415400|gb|EDN10753.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 252
Score = 45.4 bits (106), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 71/152 (46%), Gaps = 16/152 (10%)
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICIL 124
+GD ++L +V GP ++++ PE+A+IE++ KP G G E+ E IL+ L + +L
Sbjct: 24 TGD-QILGSVNGPIESGRRDQRPEEATIEILVKPGVGVSGVGERYVEGILRGVLSRVILL 82
Query: 125 TINPNTTTSVIIQVV-----HDDGA----------LLPCAINAACAALVDAGIPMKHLAV 169
++I +V DG +LP ++ A AL+ A IP+ +
Sbjct: 83 REKSMPRAGIVITLVVLKNKWADGKVTERGGSCLPILPSLLHTALLALLSATIPLSMIYT 142
Query: 170 AICCCSAESGYCILDPTKLEEQKMKGFAYLVF 201
++ + +G + +P+ + K L F
Sbjct: 143 SVLIAVSRTGELVDNPSNYHIKIAKSLHVLSF 174
>gi|456012652|gb|EMF46340.1| Polyribonucleotide nucleotidyltransferase [Planococcus
halocryophilus Or1]
Length = 705
Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 78/189 (41%), Gaps = 35/189 (18%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P+++RPL+ IL+R HGS +++G QT L +G
Sbjct: 314 RPDGRGPSEIRPLSSEVGILNRTHGSGLFTRG----QTQAMSICTLGAL-GDVQIIDGLG 368
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQI---GKPEKEYEIILKRTLQSI 121
DTK Y + + TG + G+ E + + +R L+++
Sbjct: 369 IEDTKRFMHHY---------------NFPLFSVGETGFLRGPGRREIGHGALGERALEAV 413
Query: 122 CILTINPNT-----TTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSA 176
PN T ++ +V+ +G+ +I A+ A++DAG+P+ I
Sbjct: 414 I-----PNEKDFPYTIRLVAEVLESNGSTSQASICASTLAMMDAGVPLTAPVAGIAMGLV 468
Query: 177 ESG--YCIL 183
+ G Y +L
Sbjct: 469 KKGDNYTVL 477
>gi|393216797|gb|EJD02287.1| ribosomal protein S5 domain 2-like protein [Fomitiporia
mediterranea MF3/22]
Length = 262
Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 98/247 (39%), Gaps = 59/247 (23%)
Query: 8 GRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGD 67
GR+ + +RP+ ++ +A+GSA +I+T
Sbjct: 42 GRSASDIRPIFLKTGLISQANGSA-------YIETEK----------------------- 71
Query: 68 TKVLAAVYGPK-AGTKKNENPEKASIEVIWKP------RTGQIGKPEKEYEIILKRTLQS 120
TK+ AVYGP+ + T K +EV + P R ++ I+++++L
Sbjct: 72 TKIACAVYGPRQSKTSTYHEKGKLHVEVKFAPFSCAKRRAPMRDAEDRSVSILIQQSLTP 131
Query: 121 ICILTINPNTTTSVIIQVVHDDG--ALLPCAINAACAALVDAGIPMKHLAVAICCCSAES 178
L + P ++ + + V+ +DG + AA AL A I M L V+ C +
Sbjct: 132 AIRLELIPKSSIDIFLFVIENDGIEGCVSAGAIAASTALAHARIDMLGLVVS-CAAATMP 190
Query: 179 GYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTH-GAMSVD 237
LDPT E + +G L ++ G++T+V G MS+D
Sbjct: 191 KEIWLDPTTEEARAARGRLTLACVPAL------------------GLVTNVWQTGQMSID 232
Query: 238 DYFHCLE 244
+ C++
Sbjct: 233 EVEKCID 239
>gi|347542470|ref|YP_004857107.1| polyribonucleotide nucleotidyltransferase [Candidatus Arthromitus
sp. SFB-rat-Yit]
gi|346985506|dbj|BAK81181.1| polyribonucleotide nucleotidyltransferase [Candidatus Arthromitus
sp. SFB-rat-Yit]
Length = 705
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 75/171 (43%), Gaps = 17/171 (9%)
Query: 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCY 61
E R DGRN +++RP++C SIL R HG+ +++G + T +
Sbjct: 309 EKRRPDGRNFDEIRPISCDVSILPRTHGTGLFTRGLTQVLT-----IATLGPLADVQIID 363
Query: 62 WVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSI 121
+G + K Y P + EV KP G G+ E + + ++ L+ +
Sbjct: 364 GIGEEEYKRYMHHYN---------FPSYSVGEV--KPLRGP-GRREIGHGALAEKALEPL 411
Query: 122 CILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAIC 172
T T ++ +V+ +G+ ++ + AL+DAG+P+K A I
Sbjct: 412 IPPTEEFPYTIRLVSEVLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIA 462
>gi|88812956|ref|ZP_01128199.1| Polyribonucleotide nucleotidyltransferase [Nitrococcus mobilis
Nb-231]
gi|88789734|gb|EAR20858.1| Polyribonucleotide nucleotidyltransferase [Nitrococcus mobilis
Nb-231]
Length = 700
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 80/190 (42%), Gaps = 37/190 (19%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR+ +RP++ + L R HGSA +++G ++ +G
Sbjct: 317 RIDGRDNKTVRPISIEVATLPRTHGSAIFTRG-----------------ETQAIVVTTLG 359
Query: 65 SG-DTKVLAAVYGPKAGTKKNENPEKASIEVIWKP----RTGQIGKPEKEYEI----ILK 115
+G D +++ A+ G E E + + P TG +G P K EI + K
Sbjct: 360 TGRDAQIIDAIEG--------ERKEPFMLHYNFPPYSVGETGFMGVP-KRREIGHGRLAK 410
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKH--LAVAICC 173
R +Q++ V+ ++ +G+ + AL+DAG+P+K +A+
Sbjct: 411 RGIQAVMPSQEECPYVIRVVSEITESNGSSSMATVCGTSLALMDAGVPIKAPVAGIAMGL 470
Query: 174 CSAESGYCIL 183
ES + +L
Sbjct: 471 IKEESEFAVL 480
>gi|323489596|ref|ZP_08094823.1| polynucleotide phosphorylase/polyadenylase [Planococcus donghaensis
MPA1U2]
gi|323396727|gb|EGA89546.1| polynucleotide phosphorylase/polyadenylase [Planococcus donghaensis
MPA1U2]
Length = 705
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 78/189 (41%), Gaps = 35/189 (18%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P+++RPL+ IL+R HGS +++G QT L +G
Sbjct: 314 RPDGRGPSEIRPLSSEVGILNRTHGSGLFTRG----QTQAMSICTLGAL-GDVQIIDGLG 368
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQI---GKPEKEYEIILKRTLQSI 121
DTK Y + + TG + G+ E + + +R L+++
Sbjct: 369 IEDTKRFMHHY---------------NFPLFSVGETGFLRGPGRREIGHGALGERALEAV 413
Query: 122 CILTINPNT-----TTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSA 176
PN T ++ +V+ +G+ +I A+ A++DAG+P+ I
Sbjct: 414 I-----PNEKDFPYTIRLVAEVLESNGSTSQASICASTLAMMDAGVPLTAPVAGIAMGLV 468
Query: 177 ESG--YCIL 183
+ G Y +L
Sbjct: 469 KKGDNYTVL 477
>gi|451851819|gb|EMD65117.1| hypothetical protein COCSADRAFT_88333 [Cochliobolus sativus ND90Pr]
Length = 258
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 70 VLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKP-EKEYEIILKRTLQSICILTINP 128
++ AV GP +++E PE+A+IEV +P G +G P E+ E ++ TL+SI + P
Sbjct: 27 IIGAVNGPIEVQRRDELPEEAAIEVNLRPAAG-VGSPRERHLETLVHNTLRSIILTQSIP 85
Query: 129 NTTTSVIIQV 138
T + +QV
Sbjct: 86 RTLVQITLQV 95
>gi|451995370|gb|EMD87838.1| hypothetical protein COCHEDRAFT_1159049 [Cochliobolus
heterostrophus C5]
Length = 258
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 70 VLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKP-EKEYEIILKRTLQSICILTINP 128
++ AV GP +++E PE+A+IEV +P G +G P E+ E ++ TL+SI + P
Sbjct: 27 IIGAVNGPIEVQRRDELPEEAAIEVNLRPAAG-VGSPRERHLETLVHNTLRSIILTQSIP 85
Query: 129 NTTTSVIIQV 138
T + +QV
Sbjct: 86 RTLVQITLQV 95
>gi|389624769|ref|XP_003710038.1| hypothetical protein MGG_16298 [Magnaporthe oryzae 70-15]
gi|351649567|gb|EHA57426.1| hypothetical protein MGG_16298 [Magnaporthe oryzae 70-15]
gi|440485604|gb|ELQ65546.1| hypothetical protein OOW_P131scaffold00481g15 [Magnaporthe oryzae
P131]
Length = 260
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 78/164 (47%), Gaps = 23/164 (14%)
Query: 70 VLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPN 129
V A+ GP +++E+P +A ++VI +P G G E+ E +L+ TL+ I ++ P
Sbjct: 30 VTASANGPIEAQRRDEDPYEALVDVIVRPAAGVGGTRERHLESLLQATLRQIILVKNFPR 89
Query: 130 TTTSVIIQVV---HDDGA------------LLPCAINAACAALVDAGIPMKHLA----VA 170
V++QV +D A ++P + AA AL+ A IP++ A +A
Sbjct: 90 GLIQVVLQVKSSPENDYASTKLVQANLNLPIIPALLQAAVLALLSAAIPLRATATCTVIA 149
Query: 171 ICCCS---AESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPE 211
+ S AES ILDP+ E + + L F + +L E
Sbjct: 150 VVAGSDGEAESN-LILDPSPREAEGARSVHALAFTSGDRLILAE 192
>gi|154249089|ref|YP_001409914.1| polynucleotide phosphorylase/polyadenylase [Fervidobacterium
nodosum Rt17-B1]
gi|187610262|sp|A7HK24.1|PNP_FERNB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|154153025|gb|ABS60257.1| Polyribonucleotide nucleotidyltransferase [Fervidobacterium nodosum
Rt17-B1]
Length = 693
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 82/193 (42%), Gaps = 28/193 (14%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
RADGR P +RP+ C +L R HGS+ +++G +T L + +
Sbjct: 319 RADGRGPKDIRPITCEVGLLPRTHGSSLFTRG----ETQSLGIVTLGSPAEEQIIDTLIE 374
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICIL 124
G + + P T ++ + P +IG + +R +++I
Sbjct: 375 EGTKRFILHYNFPPFST--------GEVKPLRGPSRREIGHGH-----LAERAVKAI--- 418
Query: 125 TINPNTTTSVIIQVVHD----DGALLPCAINAACAALVDAGIPM-KHLA-VAICCCSAE- 177
I P +I+VV + +G+ + +A AL+DAG+P KH+A VA+ E
Sbjct: 419 -IPPEDEFPYVIRVVSEILESNGSSSMATVCSASLALMDAGVPTKKHVAGVAMGLILEEG 477
Query: 178 SGYCILDPTKLEE 190
G + D LE+
Sbjct: 478 KGVILTDIIGLED 490
>gi|255019829|ref|ZP_05291905.1| Polyribonucleotide nucleotidyltransferase [Acidithiobacillus caldus
ATCC 51756]
gi|254970758|gb|EET28244.1| Polyribonucleotide nucleotidyltransferase [Acidithiobacillus caldus
ATCC 51756]
Length = 692
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 81/190 (42%), Gaps = 37/190 (19%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR+ +RP+ I+ R HGSA +++G ++ +G
Sbjct: 313 RIDGRDRTTVRPIEIEVGIMPRTHGSALFTRG-----------------ETQALVIATLG 355
Query: 65 S-GDTKVLAAVYGPKAGTKKNENPEKASIEVIWKP----RTGQIGKPEKEYEI----ILK 115
+ GD +++ A+ G E+ ++ + + P TG +G P K EI + K
Sbjct: 356 TKGDEQIVDALQG--------ESRDRFMLHYNFPPFSTGETGMVGSP-KRREIGHGRLAK 406
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
R + ++ + ++ +++ +G+ + A AL+DAG+P+K +
Sbjct: 407 RAVAAVLPSESEFPYSLRIVSEILESNGSSSMATVCGASLALMDAGVPLKAPVAGVAMGL 466
Query: 176 AESG--YCIL 183
+ G Y +L
Sbjct: 467 IKDGERYAVL 476
>gi|239609714|gb|EEQ86701.1| exosome complex endonuclease 1/ribosomal RNA processing protein
[Ajellomyces dermatitidis ER-3]
gi|327355373|gb|EGE84230.1| exosome complex endonuclease 1/ribosomal RNA processing protein
[Ajellomyces dermatitidis ATCC 18188]
Length = 293
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 67/176 (38%), Gaps = 26/176 (14%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR N+LR + S + GS+ S G + C G
Sbjct: 15 RLDGRRWNELRLMQAQISTNPASSGSSYLSMGNTVV------------------ICMVHG 56
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIG-----KPEKEYEIILKRTLQ 119
+ + A + G + A + + + G G + + L+ Q
Sbjct: 57 PAEGRRSEATGPAREGAVVSVAVNVAGFSGVDRKKRGATGGGGDRQASTDLATALRDAFQ 116
Query: 120 SICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
+ P++T S+ + V+ DG+L INA ALVDAGIPM L +C C+
Sbjct: 117 PHLHTHLYPHSTISLHVSVLSSDGSLFAACINACTLALVDAGIPMPGL---LCACT 169
>gi|383858041|ref|XP_003704511.1| PREDICTED: exosome complex component MTR3-like [Megachile
rotundata]
Length = 274
Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 80/196 (40%), Gaps = 41/196 (20%)
Query: 4 DRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWV 63
+R+D R N++R + ++ +A GSA ++
Sbjct: 36 NRSDKRTNNEIRKIFLKTGVVSQAKGSA------------------------------YI 65
Query: 64 GSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWK--------PRTGQIGKPEKEYEIILK 115
GDTKV+ +V+ P+ KN + I +K + Q EK+Y +IL+
Sbjct: 66 EMGDTKVVCSVFDPREIPNKNGYCVQGEIYCEFKFASFSCQKRKIHQQNAEEKQYSLILQ 125
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
R L+ L PN V V+ + G+ L AI AA AL AG+PM L A
Sbjct: 126 RALEPAVCLHEFPNFQVDVYAMVLDNAGSALAAAITAASTALASAGVPMFGLVTA--STI 183
Query: 176 AESGYCIL-DPTKLEE 190
G C L DPT EE
Sbjct: 184 GIYGDCFLMDPTDTEE 199
>gi|340057336|emb|CCC51681.1| putative RRP41p homologue [Trypanosoma vivax Y486]
Length = 252
Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 52/118 (44%), Gaps = 10/118 (8%)
Query: 63 VGSGDTKVLAAVYGPKAGTKKNENPEKASI---EVIWKPRTGQI-------GKPEKEYEI 112
V +G + V A VYGP T + + + EV+ G+ K +E
Sbjct: 42 VTAGLSHVCATVYGPCEVTNRLDTKHSEVVITCEVVVAAFAGERRREPQRRSKLSEEIST 101
Query: 113 ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVA 170
+ +S L+ PN+ + I+V+ DG INAAC ALVDA + M+ + A
Sbjct: 102 AVLEVARSTVFLSYYPNSQIHICIEVLRQDGNDKAACINAACLALVDANVAMRDIIYA 159
>gi|261196958|ref|XP_002624882.1| exosome complex endonuclease 1/ribosomal RNA processing protein
[Ajellomyces dermatitidis SLH14081]
gi|239596127|gb|EEQ78708.1| exosome complex endonuclease 1/ribosomal RNA processing protein
[Ajellomyces dermatitidis SLH14081]
Length = 293
Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 67/176 (38%), Gaps = 26/176 (14%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR N+LR + S + GS+ S G + C G
Sbjct: 15 RLDGRRWNELRLMQAQISTNPASSGSSYLSMGNTVV------------------ICMVHG 56
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIG-----KPEKEYEIILKRTLQ 119
+ + A + G + A + + + G G + + L+ Q
Sbjct: 57 PAEGRRSEATGPAREGAVVSVAVNVAGFSGVDRKKRGATGGGGDRQASTDLATALRDAFQ 116
Query: 120 SICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
+ P++T S+ + V+ DG+L INA ALVDAGIPM L +C C+
Sbjct: 117 PHLHTHLYPHSTISLHVSVLSSDGSLFAACINACTLALVDAGIPMPGL---LCACT 169
>gi|407000457|gb|EKE17750.1| hypothetical protein ACD_10C00292G0001 [uncultured bacterium]
Length = 713
Score = 45.1 bits (105), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 75/167 (44%), Gaps = 29/167 (17%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGRN +RP+ IL R HGSA +++G ++ +G
Sbjct: 318 RIDGRNNTTVRPIVSETGILPRTHGSALFTRG-----------------ETQGLVVTTLG 360
Query: 65 SG-DTKVLAAVYGPKAGTKKN-----ENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTL 118
+G D +++ A++G ++ N P + EV R G G+ E + + R L
Sbjct: 361 TGEDEQIIDALHG---NSRSNFLLHYNFPPYSVGEV---GRVGSPGRREIGHGKLAWRAL 414
Query: 119 QSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMK 165
Q++ + + T ++ ++ +G+ ++ +++DAG+P+K
Sbjct: 415 QAVLPASTDFPYTIRLVSEITESNGSSSMASVCGGSLSMMDAGVPLK 461
>gi|383785892|ref|YP_005470461.1| polyribonucleotide nucleotidyltransferase [Fervidobacterium
pennivorans DSM 9078]
gi|383108739|gb|AFG34342.1| polyribonucleotide nucleotidyltransferase [Fervidobacterium
pennivorans DSM 9078]
Length = 694
Score = 45.1 bits (105), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQG 36
RADGR P +RP++C +L R HGSA +++G
Sbjct: 321 RADGRGPKDIRPISCEVGLLPRTHGSALFTRG 352
>gi|443709878|gb|ELU04341.1| hypothetical protein CAPTEDRAFT_131639 [Capitella teleta]
Length = 200
Score = 45.1 bits (105), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 59/136 (43%), Gaps = 6/136 (4%)
Query: 66 GDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILT 125
G T+V+AA+ GP G +K S+ V + K + L+ I
Sbjct: 17 GKTEVVAAIEGPSWGKRK------PSVRVFLDQFERRPAGLSKASSLFLRSVFGEIIHHH 70
Query: 126 INPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDP 185
PNT+ S+ I + DG+LL A+NAA AA++ I + A+ C E G DP
Sbjct: 71 AYPNTSLSIHIHPLRSDGSLLSAAVNAAMAAVLGDSISCSGIHCAVSVCVGEDGTVAADP 130
Query: 186 TKLEEQKMKGFAYLVF 201
+ EQ+ VF
Sbjct: 131 DERAEQRSTSLHTFVF 146
>gi|15644097|ref|NP_229146.1| polynucleotide phosphorylase/polyadenylase [Thermotoga maritima
MSB8]
gi|170289273|ref|YP_001739511.1| polynucleotide phosphorylase/polyadenylase [Thermotoga sp. RQ2]
gi|418045402|ref|ZP_12683497.1| Polyribonucleotide nucleotidyltransferase [Thermotoga maritima
MSB8]
gi|81553535|sp|Q9X166.1|PNP_THEMA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|226704827|sp|B1LBY0.1|PNP_THESQ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|4981905|gb|AAD36416.1|AE001789_1 polynucleotide phosphorylase [Thermotoga maritima MSB8]
gi|170176776|gb|ACB09828.1| Polyribonucleotide nucleotidyltransferase [Thermotoga sp. RQ2]
gi|351676287|gb|EHA59440.1| Polyribonucleotide nucleotidyltransferase [Thermotoga maritima
MSB8]
Length = 708
Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQG 36
RADGR P ++RP++C + R HGSA +++G
Sbjct: 317 RADGRKPTEIRPISCEVGLFPRTHGSALFTRG 348
>gi|340783203|ref|YP_004749810.1| polyribonucleotide nucleotidyltransferase [Acidithiobacillus caldus
SM-1]
gi|340557354|gb|AEK59108.1| Polyribonucleotide nucleotidyltransferase [Acidithiobacillus caldus
SM-1]
Length = 692
Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 81/190 (42%), Gaps = 37/190 (19%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR+ +RP+ I+ R HGSA +++G ++ +G
Sbjct: 313 RIDGRDRTTVRPIEIEVGIMPRTHGSALFTRG-----------------ETQALVIATLG 355
Query: 65 S-GDTKVLAAVYGPKAGTKKNENPEKASIEVIWKP----RTGQIGKPEKEYEI----ILK 115
+ GD +++ A+ G E+ ++ + + P TG +G P K EI + K
Sbjct: 356 TKGDEQIVDALQG--------ESRDRFMLHYNFPPFSTGETGMVGSP-KRREIGHGRLAK 406
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
R + ++ + ++ +++ +G+ + A AL+DAG+P+K +
Sbjct: 407 RAVAAVLPSESEFPYSLRIVSEILESNGSSSMATVCGASLALMDAGVPLKAPVAGVAMGL 466
Query: 176 AESG--YCIL 183
+ G Y +L
Sbjct: 467 IKDGERYAVL 476
>gi|224001130|ref|XP_002290237.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220973659|gb|EED91989.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335]
Length = 145
Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 71/175 (40%), Gaps = 40/175 (22%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFC 60
M +R R P LRPL+ S LHRA GSAS KC
Sbjct: 1 MSYNRPSQRKPTTLRPLSAELSPLHRADGSASL----------------------KC--- 35
Query: 61 YWVGSGDTKVLAAVYGPKA-GTKKNENPEKASIEVIWKPRTGQIGKPEK---------EY 110
G+T ++ A++GP A E ++A + V + + E+
Sbjct: 36 -----GNTHIMVAIHGPIAPRISHREKYDRAVVNVAFSKGLMMMAGSAAGGGSSGDVVEH 90
Query: 111 EIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMK 165
+ L S +L P V+IQ+V DG++L A N A AL+DAG+ M+
Sbjct: 91 DTADGDALSSCIMLEKYPRCVIQVVIQIVQADGSVLGSATNCAVMALMDAGVAMR 145
>gi|403253711|ref|ZP_10920012.1| polynucleotide phosphorylase/polyadenylase [Thermotoga sp. EMP]
gi|402811245|gb|EJX25733.1| polynucleotide phosphorylase/polyadenylase [Thermotoga sp. EMP]
Length = 708
Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQG 36
RADGR P ++RP++C + R HGSA +++G
Sbjct: 317 RADGRKPTEIRPISCEVGLFPRTHGSALFTRG 348
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.135 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,392,533,614
Number of Sequences: 23463169
Number of extensions: 175187049
Number of successful extensions: 362646
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1036
Number of HSP's successfully gapped in prelim test: 356
Number of HSP's that attempted gapping in prelim test: 359915
Number of HSP's gapped (non-prelim): 2186
length of query: 273
length of database: 8,064,228,071
effective HSP length: 140
effective length of query: 133
effective length of database: 9,074,351,707
effective search space: 1206888777031
effective search space used: 1206888777031
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 75 (33.5 bits)