BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024064
(273 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q84T68|EXOS5_ORYSJ Exosome complex exonuclease RRP46 homolog OS=Oryza sativa subsp.
japonica GN=RRP46 PE=1 SV=2
Length = 238
Score = 315 bits (806), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 161/269 (59%), Positives = 192/269 (71%), Gaps = 31/269 (11%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFC 60
ME RADGRNPNQLRP +C+ + L RAHGSA W+QG
Sbjct: 1 MEESRADGRNPNQLRPFSCTRNPLDRAHGSARWAQG------------------------ 36
Query: 61 YWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQS 120
DT VLAAVYGPK GT+K ENPEKASIEV+WKP TGQIGK EKEYE+ LKRTLQS
Sbjct: 37 ------DTIVLAAVYGPKPGTRKGENPEKASIEVVWKPMTGQIGKQEKEYEMTLKRTLQS 90
Query: 121 ICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGY 180
IC+LT++PNTTTSVI+QVV +DG+LLPCAINA CAALV AGIP+KHLAVAI C E G
Sbjct: 91 ICLLTVHPNTTTSVILQVVGNDGSLLPCAINACCAALVFAGIPLKHLAVAIGCGVLEDGE 150
Query: 181 CILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYF 240
ILD K EEQ++K FA+LVFPNS S + + + E E G+ITS+THG MS +DYF
Sbjct: 151 VILDTNKAEEQQLKSFAHLVFPNSRKSASSKEPNQKE-EDSERGLITSITHGVMSEEDYF 209
Query: 241 HCLERGRAASAKLSDFLRRSLQSKLPGDL 269
C+ERG AAS+++SDF+R +LQ + PGD+
Sbjct: 210 SCIERGLAASSRISDFMRTTLQKQAPGDV 238
>sp|Q9NQT4|EXOS5_HUMAN Exosome complex component RRP46 OS=Homo sapiens GN=EXOSC5 PE=1 SV=1
Length = 235
Score = 119 bits (299), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/194 (36%), Positives = 101/194 (52%), Gaps = 33/194 (17%)
Query: 9 RNPN-QLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGD 67
R P LR AC ++L R GSAS+ QG D
Sbjct: 22 RGPGCSLRHFACEQNLLSRPDGSASFLQG------------------------------D 51
Query: 68 TKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTIN 127
T VLA VYGP E KA++EVI +P+ G G EK E +++ T +++ + T++
Sbjct: 52 TSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLPGVAEKSRERLIRNTCEAVVLGTLH 111
Query: 128 PNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTK 187
P T+ +V++QVV D G+LL C +NAAC ALVDAG+PM+ L + C G +LDPT
Sbjct: 112 PRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVPMRALFCGVACALDSDGTLVLDPTS 171
Query: 188 LEEQKMKGFAYLVF 201
+E++ + A L F
Sbjct: 172 KQEKEAR--AVLTF 183
>sp|Q9CRA8|EXOS5_MOUSE Exosome complex component RRP46 OS=Mus musculus GN=Exosc5 PE=1 SV=1
Length = 235
Score = 116 bits (291), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/188 (36%), Positives = 98/188 (52%), Gaps = 32/188 (17%)
Query: 14 LRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLAA 73
LR AC ++L R GSAS+ QG DT VLA
Sbjct: 28 LRHFACEQNLLSRPDGSASFLQG------------------------------DTSVLAG 57
Query: 74 VYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTS 133
VYGP E KA++EVI +P+ G G EK E +++ T +++ + ++P T+ +
Sbjct: 58 VYGPAEVKVSKEIFNKATLEVILRPKIGLPGVAEKSRERLVRNTCEAVVLGALHPRTSIT 117
Query: 134 VIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKM 193
V++QVV D G+LL C +NAAC ALVDAG+PM+ L + C G +LDPT +E++
Sbjct: 118 VVLQVVSDAGSLLACCLNAACMALVDAGVPMRALFCGVTCALDSDGNLVLDPTTKQEKEA 177
Query: 194 KGFAYLVF 201
+ A L F
Sbjct: 178 R--AILTF 183
>sp|O29757|ECX1_ARCFU Probable exosome complex exonuclease 1 OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=AF_0493 PE=1 SV=1
Length = 258
Score = 77.8 bits (190), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 114/269 (42%), Gaps = 60/269 (22%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR ++LRP+ S+L RA GS CY
Sbjct: 17 RLDGRKFDELRPIKIEASVLKRADGS--------------------------CYLEM--- 47
Query: 65 SGDTKVLAAVYGPKAGTKKN-ENPEKASIEVIWK------PRTGQIGKPEKEYEI--ILK 115
G KV+AAV+GP+ ++ ++P KA I + + G + EI + K
Sbjct: 48 -GKNKVIAAVFGPREVHPRHLQDPSKAIIRYRYNMAPFSVEERKRPGPDRRSIEISKVSK 106
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
+++ + + P + + ++V+ D +NAA ALVDAG+PMK + ++
Sbjct: 107 EAFEAVIMKELFPRSAIDIFVEVLQADAGSRTACLNAASVALVDAGVPMKGMITSVAVGK 166
Query: 176 AESGYCILDPTKLEEQKMKG---FAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHG 232
A+ G +LDP K E+ + FA+L+ I S+ +L+Q G
Sbjct: 167 AD-GQLVLDPMKEEDNFGEADMPFAFLIRNGKIESI-----ALLQ------------MDG 208
Query: 233 AMSVDDYFHCLERGRAASAKLSDFLRRSL 261
M+ D+ +E + + ++ + R ++
Sbjct: 209 RMTRDEVKQAIELAKKGALQIYEMQREAI 237
>sp|O59223|ECX1_PYRHO Probable exosome complex exonuclease 1 OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139
/ OT-3) GN=PH1549 PE=3 SV=1
Length = 249
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 84/195 (43%), Gaps = 40/195 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +LRP+ +L A+GSA + W
Sbjct: 17 RIDGRKKYELRPIKMKVGVLKNANGSA---------------------------YIEW-- 47
Query: 65 SGDTKVLAAVYGPKA-GTKKNENPEKASIEVIWK------PRTGQIGKPEKEYEI--ILK 115
G K++AAVYGP+ +K + P++A + V + + G + EI ++K
Sbjct: 48 -GRNKIIAAVYGPRELHSKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSIEISKVIK 106
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
L+ IL + P T+ V I+V+ D I AA AL DAGIPM+ L VA C
Sbjct: 107 GALEPALILEMFPRTSIDVFIEVLQADAGTRVAGITAASLALADAGIPMRDL-VAACAAG 165
Query: 176 AESGYCILDPTKLEE 190
G +LD K E+
Sbjct: 166 KIEGEIVLDLNKEED 180
>sp|A2BKC0|ECX1_HYPBU Probable exosome complex exonuclease 1 OS=Hyperthermus butylicus
(strain DSM 5456 / JCM 9403) GN=Hbut_0571 PE=3 SV=1
Length = 255
Score = 75.5 bits (184), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 110/269 (40%), Gaps = 57/269 (21%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P QLRP+ +L A GSA V
Sbjct: 25 RHDGRLPEQLRPIRMEVGVLSNADGSA------------------------------LVE 54
Query: 65 SGDTKVLAAVYGPKAGTKKNEN-PEKASIEVIW--------KPRTGQIGKPEKEYEIILK 115
G T+V+AAVYGP+ ++ P++A I + + +T + E E +++
Sbjct: 55 YGGTRVIAAVYGPREAHPRHVALPDRAIIRCRYHMAPFSTAERKTPAPTRREVELSKVIR 114
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
L+++ I + P T V ++V+ DG AI AA AL DAGI M+ L +
Sbjct: 115 EALEAVVISELYPRTAIDVYMEVLQSDGGTRTAAITAASLALADAGIAMRDLVAGVAVGK 174
Query: 176 AESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMS 235
+ G +LD ++E+ + + S+ VL L+Q +G ++
Sbjct: 175 VD-GVLVLDIDEIEDNYAEADMPVAMAPSLDKVL-----LLQ------------LNGVLT 216
Query: 236 VDDYFHCLERGRAASAKLSDFLRRSLQSK 264
D++ LE R + + + +L+ K
Sbjct: 217 HDEFVKALELARKGIQVIYNLQKEALRKK 245
>sp|Q9V119|ECX1_PYRAB Probable exosome complex exonuclease 1 OS=Pyrococcus abyssi (strain
GE5 / Orsay) GN=PYRAB06100 PE=1 SV=1
Length = 249
Score = 75.5 bits (184), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 108/269 (40%), Gaps = 57/269 (21%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +LRP+ +L A+GSA + W
Sbjct: 17 RIDGRKKYELRPIKMEVGVLKNANGSA---------------------------YIEW-- 47
Query: 65 SGDTKVLAAVYGPKAGTKKN-ENPEKASIEVIWK------PRTGQIGKPEKEYEI--ILK 115
G K++AAVYGP+ K+ + P++A + V + + G + EI ++K
Sbjct: 48 -GKNKIIAAVYGPRELHPKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSIEISKVIK 106
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
L+ IL + P T V I+V+ D I AA AL DAGIPM+ L VA C
Sbjct: 107 GALEPALILEMFPRTAIDVFIEVLQADAGTRVAGITAASLALADAGIPMRDL-VAACAAG 165
Query: 176 AESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMS 235
G +LD K E+ + P +I+ P+++ I G ++
Sbjct: 166 KIEGEIVLDLNKEEDN----YGEADVPVAIM-------------PLKNDITLLQMDGYLT 208
Query: 236 VDDYFHCLERGRAASAKLSDFLRRSLQSK 264
D++ ++ + + R +L+ K
Sbjct: 209 KDEFIEAVKLAIKGAKAVYQKQREALKEK 237
>sp|B6YSI2|ECX1_THEON Probable exosome complex exonuclease 1 OS=Thermococcus onnurineus
(strain NA1) GN=TON_0030 PE=3 SV=1
Length = 249
Score = 74.7 bits (182), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 82/195 (42%), Gaps = 40/195 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +LRP+ +L A GSA + W
Sbjct: 17 RIDGRKKYELRPIKMEVGVLKNADGSA---------------------------YVEW-- 47
Query: 65 SGDTKVLAAVYGPKAGTKKN-ENPEKASIEVIWK------PRTGQIGKPEKEYEI--ILK 115
G K+LAAVYGP+ K+ + P++A + V + + G + EI +++
Sbjct: 48 -GKNKILAAVYGPREIHPKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSVEISKVIR 106
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
L+ IL + P T + I+V+ D I AA AL DAGIPM+ L VA C
Sbjct: 107 GALEPALILEMFPRTAIDIFIEVLQADAGTRVAGITAASLALADAGIPMRDL-VAACAAG 165
Query: 176 AESGYCILDPTKLEE 190
G +LD K E+
Sbjct: 166 KIEGEIVLDLNKEED 180
>sp|Q5JIR6|ECX1_PYRKO Probable exosome complex exonuclease 1 OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=TK1634 PE=3
SV=1
Length = 249
Score = 74.3 bits (181), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 82/195 (42%), Gaps = 40/195 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +LRP+ +L A GSA + W
Sbjct: 17 RIDGRKKYELRPIKMEVGVLKNADGSA---------------------------YVEW-- 47
Query: 65 SGDTKVLAAVYGPKAGTKKN-ENPEKASIEVIWK------PRTGQIGKPEKEYEI--ILK 115
G KVLAAVYGP+ K+ + P++A + V + + G + EI +++
Sbjct: 48 -GKNKVLAAVYGPREIHPKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSVEISKVIR 106
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
L+ +L + P T V I+++ D I AA AL DAGIPMK L VA C
Sbjct: 107 GALEPALLLHMFPRTAIDVFIEILQADAGTRVAGITAASLALADAGIPMKDL-VAACAAG 165
Query: 176 AESGYCILDPTKLEE 190
G +LD K E+
Sbjct: 166 KIDGEIVLDLNKEED 180
>sp|Q9YC03|ECX1_AERPE Probable exosome complex exonuclease 1 OS=Aeropyrum pernix (strain
ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=APE_1447 PE=3 SV=1
Length = 246
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 85/195 (43%), Gaps = 40/195 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P LRP+ ILH A GSA V
Sbjct: 17 RHDGRLPEDLRPVRMQVGILHNADGSA------------------------------LVE 46
Query: 65 SGDTKVLAAVYGPKAGTKK-NENPEKASIEVIW--------KPRTGQIGKPEKEYEIILK 115
G T+VLAAVYGP+ ++ P++A++ V + + ++ + E E +++
Sbjct: 47 FGRTRVLAAVYGPREPHQRFYVLPDRAALRVRYHMAPFSTDERKSPAPSRREIELSKVVR 106
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
L+ + + P T V ++V+ DG A+ AA AL DAGIPM+ L +
Sbjct: 107 EALEPVVLAEEFPRTVIDVFLEVLQADGGTRTAAVTAASLALADAGIPMRALVGGVAVGK 166
Query: 176 AESGYCILDPTKLEE 190
+ G ++D +LE+
Sbjct: 167 IQ-GVLVVDVDELED 180
>sp|Q8U0L9|ECX1_PYRFU Probable exosome complex exonuclease 1 OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
GN=PF1568 PE=3 SV=1
Length = 250
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 83/195 (42%), Gaps = 40/195 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +LRP+ +L A+GSA + W
Sbjct: 17 RLDGRKKYELRPIKMKVGVLKNANGSA---------------------------YIEW-- 47
Query: 65 SGDTKVLAAVYGPKAGTKKN-ENPEKASIEVIWK------PRTGQIGKPEKEYEI--ILK 115
G K++AAVYGP+ K+ + P++A + V + + G + EI +++
Sbjct: 48 -GKNKIIAAVYGPREIHPKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSIEISKVIR 106
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
L+ IL + P T V I+V+ D I AA AL DAGIPM+ L VA C
Sbjct: 107 GALEPALILEMFPRTAIDVFIEVLQADAGTRVAGITAASLALADAGIPMRDL-VAACSAG 165
Query: 176 AESGYCILDPTKLEE 190
G +LD K E+
Sbjct: 166 KIEGEIVLDLNKEED 180
>sp|Q8TYC1|ECX1_METKA Probable exosome complex exonuclease 1 OS=Methanopyrus kandleri
(strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)
GN=MK0381 PE=3 SV=1
Length = 239
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 105/273 (38%), Gaps = 57/273 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P+++RPL +L RA GSA ++
Sbjct: 15 RLDGRKPDEMRPLKIQAGVLKRADGSA------------------------------YLE 44
Query: 65 SGDTKVLAAVYGPKA-GTKKNENPEKASIEVIWK------PRTGQIGKPEKEYEI--ILK 115
G K++AAVYGP+ + + P++A + + + G + EI + K
Sbjct: 45 LGANKIVAAVYGPRELHPRHKQKPDRAVVRFRYNMAPFSVDERKRPGPDRRSIEISKLSK 104
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
L+ P T + ++V+ D I+AA AL DAGI M+ L VA C
Sbjct: 105 EALEPAIFTEYYPRTAIDIFVEVLQADAGTRCAGISAASVALADAGIEMRDL-VAACAAG 163
Query: 176 AESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMS 235
G +LDP E+ G+ P +++ P E I G M+
Sbjct: 164 KVEGKVVLDPMYYED----GYGEADVPLAMM-------------PKEGKITLLQMDGDMT 206
Query: 236 VDDYFHCLERGRAASAKLSDFLRRSLQSKLPGD 268
++ ++ + + RR+L+ K GD
Sbjct: 207 PGEFKQAVKLAKKGCKIVYKEQRRALKEKYGGD 239
>sp|Q975G8|ECX1_SULTO Probable exosome complex exonuclease 1 OS=Sulfolobus tokodaii
(strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
GN=STK_04430 PE=3 SV=2
Length = 243
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 83/189 (43%), Gaps = 40/189 (21%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P+++RP+ +L A GSA + G
Sbjct: 16 RLDGRKPDEMRPIKIELGVLKNADGSAIFEMG---------------------------- 47
Query: 65 SGDTKVLAAVYGPKAGTKKN-ENPEKASIEVIW--------KPRTGQIGKPEKEYEIILK 115
+TKV+AAVYGPK ++ P++A + V + + + + E E +++
Sbjct: 48 --NTKVIAAVYGPKEMHPRHLALPDRAVLRVRYHMTPFSTDERKNPAPSRREIELSKVIR 105
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
L+S ++ + P T V ++V+ D ++ AA AL DAGIPM+ L +
Sbjct: 106 EALESTILVELFPRTVIDVFMEVLQADAGTRLVSLMAASMALADAGIPMRDLIAGVAVGK 165
Query: 176 AESGYCILD 184
A+ G +LD
Sbjct: 166 AD-GVLVLD 173
>sp|Q9NPD3|EXOS4_HUMAN Exosome complex component RRP41 OS=Homo sapiens GN=EXOSC4 PE=1 SV=3
Length = 245
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 86/199 (43%), Gaps = 46/199 (23%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +LR + + +A GSA ++
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSA------------------------------YIE 42
Query: 65 SGDTKVLAAVYGPKA--GTKKNENPEKASIEVIWKPRTGQIGKPEK---------EYEII 113
G+TK LA VYGP G++ P++A + + T G+ ++ E +
Sbjct: 43 QGNTKALAVVYGPHEIRGSRARALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQ 102
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
L++T ++ + ++P + + +QV+ DG +NAA A++DAGIPM+ +C
Sbjct: 103 LRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDF---VCA 159
Query: 174 CSAE--SGYCILDPTKLEE 190
CSA G + D + +EE
Sbjct: 160 CSAGFVDGTALADLSHVEE 178
>sp|Q7YRA3|EXOS4_BOVIN Exosome complex component RRP41 OS=Bos taurus GN=EXOSC4 PE=2 SV=3
Length = 245
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 86/199 (43%), Gaps = 46/199 (23%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +LR + + +A GSA ++
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSA------------------------------YIE 42
Query: 65 SGDTKVLAAVYGPKA--GTKKNENPEKASIEVIWKPRTGQIGKPEK---------EYEII 113
G+TK LA VYGP G++ P++A + + T G+ ++ E +
Sbjct: 43 QGNTKALAVVYGPHEIRGSRARALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQ 102
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
L++T ++ + ++P + + +QV+ DG +NAA A++DAGIPM+ +C
Sbjct: 103 LRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDF---VCA 159
Query: 174 CSAE--SGYCILDPTKLEE 190
CSA G + D + +EE
Sbjct: 160 CSAGFVDGTALADLSHVEE 178
>sp|Q921I9|EXOS4_MOUSE Exosome complex component RRP41 OS=Mus musculus GN=Exosc4 PE=2 SV=3
Length = 245
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 86/199 (43%), Gaps = 46/199 (23%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +LR + + +A GSA ++
Sbjct: 13 RIDGRRAGELRKIQARMGVFAQADGSA------------------------------YIE 42
Query: 65 SGDTKVLAAVYGPKA--GTKKNENPEKASIEVIWKPRTGQIGKPEK---------EYEII 113
G+TK LA VYGP G++ P++A + + T G+ ++ E +
Sbjct: 43 QGNTKALAVVYGPHEIRGSRSRALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQ 102
Query: 114 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 173
L++T ++ + ++P + + +QV+ DG +NAA A++DAGIPM+ +C
Sbjct: 103 LRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNAATLAVMDAGIPMRDF---VCA 159
Query: 174 CSAE--SGYCILDPTKLEE 190
CSA G + D + +EE
Sbjct: 160 CSAGFVDGTALADLSHVEE 178
>sp|Q97BZ5|ECX1_THEVO Probable exosome complex exonuclease 1 OS=Thermoplasma volcanium
(strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 /
GSS1) GN=TV0310 PE=3 SV=1
Length = 248
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/276 (24%), Positives = 105/276 (38%), Gaps = 71/276 (25%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR+ N+LRP+ +L+RA GSA + W
Sbjct: 18 RLDGRSFNELRPIKIEAGVLNRADGSA---------------------------YIEW-- 48
Query: 65 SGDTKVLAAVYGPK------------AGTKKNENPEKASIEVIWKP----RTGQIGKPEK 108
G K++ VYGPK A K N S++ +P RT +I K
Sbjct: 49 -GGNKIIVGVYGPKEAYPKHSQDIDHAVVKARYNMAAFSVDERKRPGPDRRTMEISK--- 104
Query: 109 EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLA 168
++ L S ++ P V I+V+ D + AA AL DAGIPM+ +
Sbjct: 105 ----VISEALSSSIMIEQFPRAEIDVYIEVLQADAGTRIAGLTAATVALADAGIPMRDMV 160
Query: 169 VAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITS 228
V C G+ +LD +K E+ F P +I+ P I+
Sbjct: 161 VG-CTAGKVDGHIVLDLSKEEDN----FGEADIPMAIM-------------PKTGEIVLL 202
Query: 229 VTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSK 264
G ++ D+++ A+ K+S R +L +K
Sbjct: 203 QMDGDVTEDEFYEATSMIIEATKKISQIQRNALLNK 238
>sp|Q9HIP2|ECX1_THEAC Probable exosome complex exonuclease 1 OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=Ta1293 PE=3 SV=1
Length = 248
Score = 71.2 bits (173), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 63/273 (23%), Positives = 105/273 (38%), Gaps = 65/273 (23%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR+ N+LRP+ +L+RA GSA + W
Sbjct: 18 RLDGRSFNELRPIKIQAGVLNRADGSA---------------------------YIEW-- 48
Query: 65 SGDTKVLAAVYGPKAGTKKNENP----------EKASIEVIWKPRTGQIGKPEK---EYE 111
G K++ VYGPK K+ A+ V + R G P++ E
Sbjct: 49 -GGNKIMVGVYGPKEAYPKHSQDIDHAIVKARYNMAAFSVDERKRPG----PDRRTMEIS 103
Query: 112 IILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAI 171
++ L S ++ P V I+V+ D + AA AL DAG+PM+ + V
Sbjct: 104 KVISEALSSSIMIEQFPRAEIDVYIEVLQADAGTRIAGLTAATVALADAGVPMRDMVVG- 162
Query: 172 CCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTH 231
C G+ +LD +K E+ + P +I+ P I+
Sbjct: 163 CTAGKVDGHMVLDLSKEEDN----YGEADIPIAIM-------------PKTGDIVLMQMD 205
Query: 232 GAMSVDDYFHCLERGRAASAKLSDFLRRSLQSK 264
G ++ D+ + ++ A+ ++S R +L +K
Sbjct: 206 GDVTEDELYQAMDMIFEATKRISQIQREALLNK 238
>sp|Q9UXC2|ECX1_SULSO Probable exosome complex exonuclease 1 OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
GN=SSO0735 PE=1 SV=1
Length = 248
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 84/195 (43%), Gaps = 40/195 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P++LR + +L A GSA + G
Sbjct: 19 RTDGRKPDELRSIKIELGVLKNADGSAIFEMG---------------------------- 50
Query: 65 SGDTKVLAAVYGPKAGTKKNEN-PEKASIEVIW--------KPRTGQIGKPEKEYEIILK 115
+TK +AAVYGPK ++ + P++A + V + + + + E E +++
Sbjct: 51 --NTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTPFSTDERKNPAPSRREIELSKVIR 108
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
L+S ++ + P T V +++ D ++ AA AL DAGIPM+ L +
Sbjct: 109 EALESAVLVELFPRTAIDVFTEILQADAGSRLVSLMAASLALADAGIPMRDLIAGVAVGK 168
Query: 176 AESGYCILDPTKLEE 190
A+ G ILD + E+
Sbjct: 169 AD-GVIILDLNETED 182
>sp|O26779|ECX1_METTH Probable exosome complex exonuclease 1 OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_683 PE=1 SV=1
Length = 240
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 85/202 (42%), Gaps = 50/202 (24%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR ++LRPL IL RA GS+ + F
Sbjct: 17 REDGRAFDELRPLKIEAGILERADGSS-------------YLEF---------------- 47
Query: 65 SGDTKVLAAVYGPK-AGTKKNENPEKA-----------SIEVIWKPRTGQIGKPEKEYEI 112
G K+L AVYGP+ A +K + P++A S+E +P G + EI
Sbjct: 48 -GGNKILVAVYGPREAQIRKLQRPDRAVIRCRYNMAPFSVEERKRP-----GPDRRSVEI 101
Query: 113 --ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVA 170
I L+ IL P + V I+V+ +G I AA AL DAGIPM+ + VA
Sbjct: 102 SKITAEALRPALILEKFPRSVIDVFIEVLEAEGGTRCAGITAASVALADAGIPMRDMVVA 161
Query: 171 ICCCSAESGYCILDPTKLEEQK 192
C +LD ++ E+++
Sbjct: 162 -CAAGKVGDQVVLDLSEEEDKE 182
>sp|C5A2B9|ECX1_THEGJ Probable exosome complex exonuclease 1 OS=Thermococcus
gammatolerans (strain DSM 15229 / JCM 11827 / EJ3)
GN=TGAM_2036 PE=3 SV=1
Length = 249
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 80/195 (41%), Gaps = 40/195 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +LR + +L A GSA + W
Sbjct: 17 RIDGRRKYELRKIHMEVGVLKNADGSA---------------------------YIEW-- 47
Query: 65 SGDTKVLAAVYGPKAGTKKN-ENPEKASIEVIWK------PRTGQIGKPEKEYEI--ILK 115
G K+LAAVYGP+ K+ + P+ A + V + + G + EI +++
Sbjct: 48 -GKNKILAAVYGPREIHPKHLQRPDTAVLRVRYNMAPFSVEERKKPGPDRRSVEISKVIR 106
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
L+ IL + P T V I+V+ D I AA AL DAG+PM+ L VA C
Sbjct: 107 GALEPALILEMFPRTVVDVFIEVLQADAGTRVAGITAASLALADAGVPMRDL-VAACAAG 165
Query: 176 AESGYCILDPTKLEE 190
G +LD K E+
Sbjct: 166 KIDGEIVLDLNKDED 180
>sp|Q4JB27|ECX1_SULAC Probable exosome complex exonuclease 1 OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=Saci_0610 PE=3 SV=1
Length = 243
Score = 68.6 bits (166), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 117/269 (43%), Gaps = 57/269 (21%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR ++LRP+ +L A GSA + G
Sbjct: 16 RTDGRKLDELRPIKIELGVLKNADGSAIFEMG---------------------------- 47
Query: 65 SGDTKVLAAVYGPKAGTKKN-ENPEKASIEVIW--------KPRTGQIGKPEKEYEIILK 115
+TKV+AAVYGPK ++ P+KAS+ V + + + + E E +++
Sbjct: 48 --NTKVIAAVYGPKEMHPRHLALPDKASLRVRYHMTPFSTDERKNPAPSRREIELSKVIR 105
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
L+S +L + P T + ++V+ D A+ AA AL DAGIPM+ L +
Sbjct: 106 EALESTILLNLFPRTVIDIFMEVLQADAGTRLVALMAASMALADAGIPMRDLIAGVAVGK 165
Query: 176 AESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMS 235
A+ G +LD E++ M G A + ++VLP SL Q ++ +G M+
Sbjct: 166 AD-GSLVLDLN--EQEDMWGEA-----DMPIAVLP---SLGQ-------VVLLQLNGFMT 207
Query: 236 VDDYFHCLERGRAASAKLSDFLRRSLQSK 264
D++ E + + + + +L++K
Sbjct: 208 PDEFRRAFELAQKGISSIYALQKEALKNK 236
>sp|Q28F19|EXOS6_XENTR Exosome complex component MTR3 OS=Xenopus tropicalis GN=exosc6 PE=2
SV=1
Length = 270
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 94/220 (42%), Gaps = 42/220 (19%)
Query: 8 GRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGD 67
GR P++ RP+ +L +A GSA +++ GSG
Sbjct: 34 GRGPSEPRPVFVRAGLLSQAKGSA-------YLEA---------------------GSGG 65
Query: 68 TKVLAAVYGPKA---GTKKNENPEKASIEVIWKP--RTGQ------IGKPEKEYEIILKR 116
TKVL AV+GP+ G ++ E + ++ W P R G G ++ + L+
Sbjct: 66 TKVLCAVHGPRERGMGGERAETRGRLLCDLRWAPFSRRGPWSGSCPAGPSPRQAGLQLQE 125
Query: 117 TLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSA 176
+L+ L P V + V+ D G+ LP A++ A AL DAGI M LA+
Sbjct: 126 SLEPAVRLDRYPRAEVIVWVLVLEDRGSALPAAVSCASLALADAGIEMFDLALGCGLSRG 185
Query: 177 ESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLV 216
G +LDP EE+ G + S+L L + S L+
Sbjct: 186 PGGELLLDPDDDEEEAGSGGTMSL---SLLPTLNQVSGLI 222
>sp|B1Y978|ECX1_PYRNV Probable exosome complex exonuclease 1 OS=Pyrobaculum neutrophilum
(strain DSM 2338 / JCM 9278 / V24Sta) GN=Tneu_1381 PE=3
SV=1
Length = 246
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 87/201 (43%), Gaps = 41/201 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
RADGR P+Q+R + S ++ A GSA V
Sbjct: 14 RADGRAPDQMREVQISVGVISNADGSA------------------------------MVS 43
Query: 65 SGDTKVLAAVYGPKAGTKKNEN-PEKASIEVIW---------KPRTGQIGKPEKEYEIIL 114
G T +AAVYGP+ ++ + P++ + V + + ++ + E E +L
Sbjct: 44 YGATTAVAAVYGPREMHPRHLSLPDRGVMRVRYHMAPFSTKDERKSPTPSRREIEISKVL 103
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
+ L+ +L P + V I+++ DG+ ++ AA AL DAGI M+ L + +
Sbjct: 104 REALEPAVMLEQYPRSRIDVFIEILQADGSTRVASLTAASLALADAGIYMRDLVIGVSVG 163
Query: 175 SAESGYCILDPTKLEEQKMKG 195
+ G +LD LE+Q +G
Sbjct: 164 LVD-GTVVLDLNGLEDQYGEG 183
>sp|Q17533|EXOS4_CAEEL Putative exosome complex component RRP41 OS=Caenorhabditis elegans
GN=exos-4.1 PE=2 SV=2
Length = 240
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 80/198 (40%), Gaps = 40/198 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P Q+R + + A GS CY +
Sbjct: 10 RIDGRRPAQIRNINTRLGLNRNAEGS--------------------------CYLEH--- 40
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKP-------RTGQIGKPEKEYEI--ILK 115
G+TKVL AVYGP G +K +I + R + K EI +L+
Sbjct: 41 -GNTKVLCAVYGPYEGKSSKRIEDKCAIVCQYSATKFSGLERKNRTRGDRKSTEISRLLE 99
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
+ +S+ + P + + +V+ DG+ L +NA AL DAGIPMK +A A C
Sbjct: 100 KAFESVILTEAFPRSQLDIFCEVIQGDGSNLAACVNATSLALADAGIPMKGIASA-ATCG 158
Query: 176 AESGYCILDPTKLEEQKM 193
G I+D T EE +
Sbjct: 159 VVDGKPIVDLTSREETDL 176
>sp|A1RST0|ECX1_PYRIL Probable exosome complex exonuclease 1 OS=Pyrobaculum islandicum
(strain DSM 4184 / JCM 9189) GN=Pisl_0836 PE=3 SV=1
Length = 246
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 86/201 (42%), Gaps = 41/201 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
RADGR P+Q+R + + I+ A GSA V
Sbjct: 14 RADGRAPDQMREVNITVGIVSNADGSA------------------------------MVS 43
Query: 65 SGDTKVLAAVYGPKAGTKKNEN-PEKASIEVIW-------KPRTGQIGKPEKEYEI--IL 114
G T +AAVYGP+ ++ + P++ + V + K +E EI IL
Sbjct: 44 YGATTAVAAVYGPREMHPRHLSLPDRGVMRVRYHMAPFSTKDERKSPTPTRREIEISKIL 103
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
+ L+ +L P + V I+++ DG+ ++ AA AL DAG+ M+ L + +
Sbjct: 104 REALEPAVVLEQYPRSRIDVFIEILQADGSTRVASLTAASLALADAGVYMRDLVIGVSVG 163
Query: 175 SAESGYCILDPTKLEEQKMKG 195
+ G +LD LE+Q +G
Sbjct: 164 LVD-GAVVLDLNGLEDQYGEG 183
>sp|Q8PTT8|ECX1_METMA Probable exosome complex exonuclease 1 OS=Methanosarcina mazei
(strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833
/ OCM 88) GN=MM_2623 PE=3 SV=1
Length = 493
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 81/195 (41%), Gaps = 40/195 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +++RP+ +L RA GS CY +
Sbjct: 17 RLDGRRADEIRPMKIEVGVLSRADGS--------------------------CYLEW--- 47
Query: 65 SGDTKVLAAVYGPK-AGTKKNENPEKASIEVIWKPRTGQI------GKPEKEYEI--ILK 115
G K+L V+GP+ A ++++ + A I + + + G + EI + +
Sbjct: 48 -GRNKILVGVFGPREAHPRRSQRADSAVIRYRYNMASFSVEDRARPGPSRRSIEISKVSR 106
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
+ + + + P T + ++V+ D AINA+ AL DAGIPMK L + C
Sbjct: 107 EAFEPVIMAELFPKTAIDIFVEVLQADAGTRTAAINASSIALADAGIPMKGL-ITSCAFG 165
Query: 176 AESGYCILDPTKLEE 190
G +LD K E+
Sbjct: 166 KVDGKIVLDLNKEED 180
>sp|A8WQQ5|EXOS4_CAEBR Putative exosome complex component RRP41 OS=Caenorhabditis briggsae
GN=exos-4.1 PE=3 SV=1
Length = 240
Score = 62.0 bits (149), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 82/198 (41%), Gaps = 40/198 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P Q+R + + A GS CY +
Sbjct: 10 RMDGRRPAQIRNINTRLGLNRNAEGS--------------------------CYLEH--- 40
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRT----GQIGKPE---KEYEI--ILK 115
G+TKVL AVYGP ++ +I + T + +P K EI +L+
Sbjct: 41 -GNTKVLCAVYGPYESKASKRLEDRCAIVCQYSTTTFSGLERKNRPRGDRKSTEISRLLE 99
Query: 116 RTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 175
+ +S+ + P + + +V+ DG+ L +NA AL DAGIPMK +A A C
Sbjct: 100 KAFESVILTESFPRSQIDIFCEVIQGDGSNLAACVNATSLALADAGIPMKGIASAATCGI 159
Query: 176 AESGYCILDPTKLEEQKM 193
E+ I+D T EE +
Sbjct: 160 VETKP-IVDLTSREETDL 176
>sp|Q8ZVM9|ECX1_PYRAE Probable exosome complex exonuclease 1 OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=PAE2207 PE=3 SV=1
Length = 246
Score = 61.6 bits (148), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 87/201 (43%), Gaps = 41/201 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
RADGR P+Q+R + + ++ A GSA V
Sbjct: 14 RADGRTPDQMREVKIAVGVVSNADGSA------------------------------MVS 43
Query: 65 SGDTKVLAAVYGPKAGTKKNEN-PEKASIEVIW---------KPRTGQIGKPEKEYEIIL 114
G T +AAVYGP+ ++ + P++ + V + + ++ + E E IL
Sbjct: 44 YGATTAVAAVYGPREMHPRHLSLPDRGVMRVRYHMAPFSTKDERKSPTPSRREIEISKIL 103
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
+ L+ +L P + V ++++ DG+ ++ AA AL DAGI M+ L V +
Sbjct: 104 REALEPAIVLEQYPRSRIDVFVEILQADGSTRVASLTAASLALADAGIYMRDLVVGVSVG 163
Query: 175 SAESGYCILDPTKLEEQKMKG 195
+ G +LD LE+Q +G
Sbjct: 164 LVD-GTVVLDLNGLEDQYGEG 183
>sp|O42872|RRP41_SCHPO Exosome complex component ski6 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=ski6 PE=2 SV=1
Length = 242
Score = 61.6 bits (148), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 87/212 (41%), Gaps = 47/212 (22%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR +++R C I +GSA FI+
Sbjct: 13 RNDGRRWDEMRNFQCRIGIEPSENGSA-------FIEL---------------------- 43
Query: 65 SGDTKVLAAVYGPKA---GTKKNENPEKASIEV-IWKPRTGQIGKPEKEYEII------L 114
G+TKVL V GP +K + ++E+ I T + K K I L
Sbjct: 44 -GNTKVLCIVDGPSEPVIKSKARADRTFVNVEINIASFSTIDVKKRFKSDRRIQLQCLAL 102
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
+ T + I + P + SV + V+ DDGA++ INA AL+DAGIP+K +CC
Sbjct: 103 QNTFEEIIQTELYPRSQISVYLHVLQDDGAVMASCINATTLALIDAGIPVKDF---VCCS 159
Query: 175 SA---ESGYCILDPTKLEEQKMKGFAYLVFPN 203
+A ES +LD LEE + V N
Sbjct: 160 TAGIVESDM-LLDLNSLEESALSWLTVAVLGN 190
>sp|P53256|RRP46_YEAST Exosome complex component RRP46 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RRP46 PE=1 SV=2
Length = 223
Score = 61.6 bits (148), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 89/209 (42%), Gaps = 20/209 (9%)
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICIL 124
S DTKV+ +V GP + E P + ++E+I +P G EK E L+ L +
Sbjct: 21 SQDTKVICSVTGPIEPKARQELPTQLALEIIVRPAKGVATTREKVLEDKLRAVLTPLITR 80
Query: 125 TINPNTTTSVIIQVV---HDDGAL----LPCAINAACAALVDAGIPMKHLAVAI-CCCSA 176
P + Q++ D+ L C INAA ALVDAGI + + +I
Sbjct: 81 HCYPRQLCQITCQILESGEDEAEFSLRELSCCINAAFLALVDAGIALNSMCASIPIAIIK 140
Query: 177 ESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSV 236
++ I+DPT E+ K+ LSV V G + ++ ++G +
Sbjct: 141 DTSDIIVDPTA-EQLKIS-----------LSVHTLALEFVNGGKVVKNVLLLDSNGDFNE 188
Query: 237 DDYFHCLERGRAASAKLSDFLRRSLQSKL 265
D F LE G +L +RR +Q +
Sbjct: 189 DQLFSLLELGEQKCQELVTNIRRIIQDNI 217
>sp|O42894|RRP46_SCHPO Exosome complex component rrp46 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rrp46 PE=3 SV=1
Length = 226
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 64/152 (42%), Gaps = 31/152 (20%)
Query: 23 ILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLAAVYGPKAGTK 82
IL R+ GS+ W QG +V+ V GP
Sbjct: 6 ILSRSDGSSEWKQG------------------------------SARVICGVNGPIDVKI 35
Query: 83 KNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDD 142
++E KA++EV+ +P +G EK + L+ L P T V IQ++ +D
Sbjct: 36 RDERLNKATVEVLVQPVSGVAETLEKMISSRIVGILEDAIFLNTYPRTLIQVSIQIIEED 95
Query: 143 GA-LLPCAINAACAALVDAGIPMKHLAVAICC 173
G L IN A AL+DAGI +K++ AI C
Sbjct: 96 GTDTLAAVINGAVLALLDAGISLKYIPCAINC 127
>sp|A9A5C9|ECX1_NITMS Probable exosome complex exonuclease 1 OS=Nitrosopumilus maritimus
(strain SCM1) GN=Nmar_0432 PE=3 SV=1
Length = 244
Score = 57.8 bits (138), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 73/190 (38%), Gaps = 28/190 (14%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR ++ R + L A GS+ G I VF + +
Sbjct: 17 RCDGRTVDEPRRIMIKAGGLKNADGSSYIEFGDNKILVG--------VFGPRDVHPKHMS 68
Query: 65 SGDTKVLAAVYGPK---AGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSI 121
DT +L Y + G +KN P + IE+ ++K L+
Sbjct: 69 DTDTGILRVRYHMEPFSVGERKNPAPSRREIEI----------------SKVIKEALEPA 112
Query: 122 CILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYC 181
+L P T V I+V+ DG A+ AA AL DAGIPM+ + AI +
Sbjct: 113 VMLEKFPRTAVDVFIEVLQADGGTRCAALTAASVALADAGIPMRDMVAAIAAGKV-ADTV 171
Query: 182 ILDPTKLEEQ 191
ILD E+Q
Sbjct: 172 ILDVNNEEDQ 181
>sp|A4WM67|ECX1_PYRAR Probable exosome complex exonuclease 1 OS=Pyrobaculum arsenaticum
(strain DSM 13514 / JCM 11321) GN=Pars_1937 PE=3 SV=1
Length = 246
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 73/171 (42%), Gaps = 40/171 (23%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
RADGR P+Q+R + S ++ A GSA V
Sbjct: 14 RADGRLPDQMREVKISVGVVSNADGSA------------------------------MVS 43
Query: 65 SGDTKVLAAVYGPKAGTKKNEN-PEKASIEVIW---------KPRTGQIGKPEKEYEIIL 114
G T +AAVYGP+ ++ + P++ + V + + ++ + E E +L
Sbjct: 44 YGATTAVAAVYGPREMHPRHLSLPDRGVMRVRYHMAPFSTKDERKSPTPSRREIEISKVL 103
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMK 165
+ L+ +L P + V I+++ DG+ ++ AA AL DAGI M+
Sbjct: 104 REALEPAVLLEQYPRSRIDVFIEIIQADGSTRVASLTAASLALADAGIYMR 154
>sp|A3MUP1|ECX1_PYRCJ Probable exosome complex exonuclease 1 OS=Pyrobaculum calidifontis
(strain JCM 11548 / VA1) GN=Pcal_0933 PE=3 SV=1
Length = 246
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 84/201 (41%), Gaps = 41/201 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
RADGR P+Q+R + + A GSA V
Sbjct: 14 RADGRAPDQMREVQIQVGTVSNADGSAV------------------------------VS 43
Query: 65 SGDTKVLAAVYGPKAGTKKNEN-PEKASIEVIW---------KPRTGQIGKPEKEYEIIL 114
G T +AAVYGP+ ++ + P++ + V + + ++ + E E +L
Sbjct: 44 YGATTAVAAVYGPREMHPRHLSLPDRGVMRVRYHMAPFSTKDERKSPTPSRREIEISKVL 103
Query: 115 KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 174
+ L+ +L P + V I+++ DG+ ++ AA AL DAGI M+ L V +
Sbjct: 104 REALEPAVMLEQYPRSRIDVFIEILQADGSTRVASLTAASLALADAGIYMRDLVVGVSVG 163
Query: 175 SAESGYCILDPTKLEEQKMKG 195
+ G +LD LE+ +G
Sbjct: 164 LVD-GTVVLDLNGLEDNYGEG 183
>sp|Q6P0I8|EXOS6_DANRE Exosome complex component MTR3 OS=Danio rerio GN=exosc6 PE=2 SV=2
Length = 271
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 79/191 (41%), Gaps = 40/191 (20%)
Query: 9 RNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDT 68
R +RP+ C ++ +A GSA ++ +G+T
Sbjct: 37 RGNGDVRPVFARCGLVSQAKGSA------------------------------YIEAGNT 66
Query: 69 KVLAAVYGPKAGTKKNENPEKASIEVI---WKP-----RTGQI-GKPEKEYEIILKRTLQ 119
K++ +VYGPK +++E K V P R I G E++ L +L+
Sbjct: 67 KIICSVYGPKETERRDETDMKTGRLVCDFRLAPFSCVKRGAWIQGSEERDLSATLMESLR 126
Query: 120 SICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESG 179
L P + V + V+ +DG++L A+ A AL DAGI M + + C
Sbjct: 127 PGVCLHRYPRSQIDVNVMVLENDGSVLAHAVTCASMALADAGIEMYDIVLG-CTLRQSGN 185
Query: 180 YCILDPTKLEE 190
C++DP+ EE
Sbjct: 186 ACLVDPSYAEE 196
>sp|B9DPE0|PNP_STACT Polyribonucleotide nucleotidyltransferase OS=Staphylococcus
carnosus (strain TM300) GN=pnp PE=3 SV=1
Length = 701
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 79/181 (43%), Gaps = 19/181 (10%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P+++RPL +L RAHGS +++G QT L S+ +G
Sbjct: 319 RPDGRKPDEIRPLDSEVGLLPRAHGSGLFTRG----QTQALSVLTLGAM-SEYQLIDGLG 373
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICIL 124
+ + K Y + P +A G+ E + + +R L+ I
Sbjct: 374 TEEEKRFMHHYNFPNFSVGETGPVRAP------------GRREIGHGALGERALRYIIPD 421
Query: 125 TINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKH--LAVAICCCSAESGYCI 182
T + T ++ +V+ +G+ +I + AL+DAG+P+K +A+ + + Y I
Sbjct: 422 TKDFPYTVRIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRDDNYTI 481
Query: 183 L 183
L
Sbjct: 482 L 482
>sp|Q4L5X7|PNP_STAHJ Polyribonucleotide nucleotidyltransferase OS=Staphylococcus
haemolyticus (strain JCSC1435) GN=pnp PE=3 SV=1
Length = 700
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 81/184 (44%), Gaps = 25/184 (13%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P+++RPL +L RAHGS +++G QT L V T Y +
Sbjct: 319 RPDGRKPDEIRPLESEVGLLPRAHGSGLFTRG----QTQA-----LSVLTLGALGDYQLI 369
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQI---GKPEKEYEIILKRTLQSI 121
G GP+ + + + V TG + G+ E + + +R L+ I
Sbjct: 370 DG--------LGPEQEKRFMHHYNFPNFSV---GETGPVRAPGRREIGHGALGERALKYI 418
Query: 122 CILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKH--LAVAICCCSAESG 179
T T ++ +V+ +G+ +I + AL+DAG+P+K +A+ + E
Sbjct: 419 IPDTTEFPYTVRIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDS 478
Query: 180 YCIL 183
Y IL
Sbjct: 479 YTIL 482
>sp|Q6GHG1|PNP_STAAR Polyribonucleotide nucleotidyltransferase OS=Staphylococcus aureus
(strain MRSA252) GN=pnp PE=3 SV=1
Length = 698
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 75/181 (41%), Gaps = 19/181 (10%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P+++RPL IL R HGS +++G QT L +G
Sbjct: 319 RPDGRKPDEIRPLDSEVGILPRTHGSGLFTRG----QTQALSVLTLGAL-GDYQLIDGLG 373
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICIL 124
+ K Y + P +A G+ E + + +R L+ I
Sbjct: 374 PEEEKRFMHHYNFPNFSVGETGPVRAP------------GRREIGHGALGERALKYIIPD 421
Query: 125 TINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKH--LAVAICCCSAESGYCI 182
T + T ++ +V+ +G+ +I + AL+DAG+P+K +A+ + E Y I
Sbjct: 422 TADFPYTIRIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTI 481
Query: 183 L 183
L
Sbjct: 482 L 482
>sp|A8Z3V4|PNP_STAAT Polyribonucleotide nucleotidyltransferase OS=Staphylococcus aureus
(strain USA300 / TCH1516) GN=pnp PE=3 SV=1
Length = 698
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 75/181 (41%), Gaps = 19/181 (10%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P+++RPL IL R HGS +++G QT L +G
Sbjct: 319 RPDGRKPDEIRPLDSEVGILPRTHGSGLFTRG----QTQALSVLTLGAL-GDYQLIDGLG 373
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICIL 124
+ K Y + P +A G+ E + + +R L+ I
Sbjct: 374 PEEEKRFMHHYNFPNFSVGETGPVRAP------------GRREIGHGALGERALKYIIPD 421
Query: 125 TINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKH--LAVAICCCSAESGYCI 182
T + T ++ +V+ +G+ +I + AL+DAG+P+K +A+ + E Y I
Sbjct: 422 TADFPYTIRIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTI 481
Query: 183 L 183
L
Sbjct: 482 L 482
>sp|Q7A5X7|PNP_STAAN Polyribonucleotide nucleotidyltransferase OS=Staphylococcus aureus
(strain N315) GN=pnp PE=1 SV=1
Length = 698
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 75/181 (41%), Gaps = 19/181 (10%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P+++RPL IL R HGS +++G QT L +G
Sbjct: 319 RPDGRKPDEIRPLDSEVGILPRTHGSGLFTRG----QTQALSVLTLGAL-GDYQLIDGLG 373
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICIL 124
+ K Y + P +A G+ E + + +R L+ I
Sbjct: 374 PEEEKRFMHHYNFPNFSVGETGPVRAP------------GRREIGHGALGERALKYIIPD 421
Query: 125 TINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKH--LAVAICCCSAESGYCI 182
T + T ++ +V+ +G+ +I + AL+DAG+P+K +A+ + E Y I
Sbjct: 422 TADFPYTIRIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTI 481
Query: 183 L 183
L
Sbjct: 482 L 482
>sp|Q99UJ8|PNP_STAAM Polyribonucleotide nucleotidyltransferase OS=Staphylococcus aureus
(strain Mu50 / ATCC 700699) GN=pnp PE=1 SV=1
Length = 698
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 75/181 (41%), Gaps = 19/181 (10%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P+++RPL IL R HGS +++G QT L +G
Sbjct: 319 RPDGRKPDEIRPLDSEVGILPRTHGSGLFTRG----QTQALSVLTLGAL-GDYQLIDGLG 373
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICIL 124
+ K Y + P +A G+ E + + +R L+ I
Sbjct: 374 PEEEKRFMHHYNFPNFSVGETGPVRAP------------GRREIGHGALGERALKYIIPD 421
Query: 125 TINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKH--LAVAICCCSAESGYCI 182
T + T ++ +V+ +G+ +I + AL+DAG+P+K +A+ + E Y I
Sbjct: 422 TADFPYTIRIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTI 481
Query: 183 L 183
L
Sbjct: 482 L 482
>sp|A6QGH3|PNP_STAAE Polyribonucleotide nucleotidyltransferase OS=Staphylococcus aureus
(strain Newman) GN=pnp PE=3 SV=1
Length = 698
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 75/181 (41%), Gaps = 19/181 (10%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P+++RPL IL R HGS +++G QT L +G
Sbjct: 319 RPDGRKPDEIRPLDSEVGILPRTHGSGLFTRG----QTQALSVLTLGAL-GDYQLIDGLG 373
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICIL 124
+ K Y + P +A G+ E + + +R L+ I
Sbjct: 374 PEEEKRFMHHYNFPNFSVGETGPVRAP------------GRREIGHGALGERALKYIIPD 421
Query: 125 TINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKH--LAVAICCCSAESGYCI 182
T + T ++ +V+ +G+ +I + AL+DAG+P+K +A+ + E Y I
Sbjct: 422 TADFPYTIRIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTI 481
Query: 183 L 183
L
Sbjct: 482 L 482
>sp|Q5HGF7|PNP_STAAC Polyribonucleotide nucleotidyltransferase OS=Staphylococcus aureus
(strain COL) GN=pnp PE=3 SV=1
Length = 698
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 75/181 (41%), Gaps = 19/181 (10%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P+++RPL IL R HGS +++G QT L +G
Sbjct: 319 RPDGRKPDEIRPLDSEVGILPRTHGSGLFTRG----QTQALSVLTLGAL-GDYQLIDGLG 373
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICIL 124
+ K Y + P +A G+ E + + +R L+ I
Sbjct: 374 PEEEKRFMHHYNFPNFSVGETGPVRAP------------GRREIGHGALGERALKYIIPD 421
Query: 125 TINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKH--LAVAICCCSAESGYCI 182
T + T ++ +V+ +G+ +I + AL+DAG+P+K +A+ + E Y I
Sbjct: 422 TADFPYTIRIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTI 481
Query: 183 L 183
L
Sbjct: 482 L 482
>sp|A5ISF8|PNP_STAA9 Polyribonucleotide nucleotidyltransferase OS=Staphylococcus aureus
(strain JH9) GN=pnp PE=3 SV=1
Length = 698
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 75/181 (41%), Gaps = 19/181 (10%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P+++RPL IL R HGS +++G QT L +G
Sbjct: 319 RPDGRKPDEIRPLDSEVGILPRTHGSGLFTRG----QTQALSVLTLGAL-GDYQLIDGLG 373
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICIL 124
+ K Y + P +A G+ E + + +R L+ I
Sbjct: 374 PEEEKRFMHHYNFPNFSVGETGPVRAP------------GRREIGHGALGERALKYIIPD 421
Query: 125 TINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKH--LAVAICCCSAESGYCI 182
T + T ++ +V+ +G+ +I + AL+DAG+P+K +A+ + E Y I
Sbjct: 422 TADFPYTIRIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTI 481
Query: 183 L 183
L
Sbjct: 482 L 482
>sp|Q2FZ20|PNP_STAA8 Polyribonucleotide nucleotidyltransferase OS=Staphylococcus aureus
(strain NCTC 8325) GN=pnp PE=3 SV=1
Length = 698
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 75/181 (41%), Gaps = 19/181 (10%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P+++RPL IL R HGS +++G QT L +G
Sbjct: 319 RPDGRKPDEIRPLDSEVGILPRTHGSGLFTRG----QTQALSVLTLGAL-GDYQLIDGLG 373
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICIL 124
+ K Y + P +A G+ E + + +R L+ I
Sbjct: 374 PEEEKRFMHHYNFPNFSVGETGPVRAP------------GRREIGHGALGERALKYIIPD 421
Query: 125 TINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKH--LAVAICCCSAESGYCI 182
T + T ++ +V+ +G+ +I + AL+DAG+P+K +A+ + E Y I
Sbjct: 422 TADFPYTIRIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTI 481
Query: 183 L 183
L
Sbjct: 482 L 482
>sp|Q2FHG4|PNP_STAA3 Polyribonucleotide nucleotidyltransferase OS=Staphylococcus aureus
(strain USA300) GN=pnp PE=3 SV=1
Length = 698
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 75/181 (41%), Gaps = 19/181 (10%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P+++RPL IL R HGS +++G QT L +G
Sbjct: 319 RPDGRKPDEIRPLDSEVGILPRTHGSGLFTRG----QTQALSVLTLGAL-GDYQLIDGLG 373
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICIL 124
+ K Y + P +A G+ E + + +R L+ I
Sbjct: 374 PEEEKRFMHHYNFPNFSVGETGPVRAP------------GRREIGHGALGERALKYIIPD 421
Query: 125 TINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKH--LAVAICCCSAESGYCI 182
T + T ++ +V+ +G+ +I + AL+DAG+P+K +A+ + E Y I
Sbjct: 422 TADFPYTIRIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTI 481
Query: 183 L 183
L
Sbjct: 482 L 482
>sp|A6U193|PNP_STAA2 Polyribonucleotide nucleotidyltransferase OS=Staphylococcus aureus
(strain JH1) GN=pnp PE=3 SV=1
Length = 698
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 75/181 (41%), Gaps = 19/181 (10%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P+++RPL IL R HGS +++G QT L +G
Sbjct: 319 RPDGRKPDEIRPLDSEVGILPRTHGSGLFTRG----QTQALSVLTLGAL-GDYQLIDGLG 373
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICIL 124
+ K Y + P +A G+ E + + +R L+ I
Sbjct: 374 PEEEKRFMHHYNFPNFSVGETGPVRAP------------GRREIGHGALGERALKYIIPD 421
Query: 125 TINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKH--LAVAICCCSAESGYCI 182
T + T ++ +V+ +G+ +I + AL+DAG+P+K +A+ + E Y I
Sbjct: 422 TADFPYTIRIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTI 481
Query: 183 L 183
L
Sbjct: 482 L 482
>sp|A7X1Q8|PNP_STAA1 Polyribonucleotide nucleotidyltransferase OS=Staphylococcus aureus
(strain Mu3 / ATCC 700698) GN=pnp PE=3 SV=1
Length = 698
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 75/181 (41%), Gaps = 19/181 (10%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P+++RPL IL R HGS +++G QT L +G
Sbjct: 319 RPDGRKPDEIRPLDSEVGILPRTHGSGLFTRG----QTQALSVLTLGAL-GDYQLIDGLG 373
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICIL 124
+ K Y + P +A G+ E + + +R L+ I
Sbjct: 374 PEEEKRFMHHYNFPNFSVGETGPVRAP------------GRREIGHGALGERALKYIIPD 421
Query: 125 TINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKH--LAVAICCCSAESGYCI 182
T + T ++ +V+ +G+ +I + AL+DAG+P+K +A+ + E Y I
Sbjct: 422 TADFPYTIRIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTI 481
Query: 183 L 183
L
Sbjct: 482 L 482
>sp|Q8NWY9|PNP_STAAW Polyribonucleotide nucleotidyltransferase OS=Staphylococcus aureus
(strain MW2) GN=pnp PE=3 SV=1
Length = 698
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 75/181 (41%), Gaps = 19/181 (10%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVG 64
R DGR P+++RPL IL R HGS +++G QT L +G
Sbjct: 319 RPDGRKPDEIRPLDSEVGILPRTHGSGLFTRG----QTQALSVLTLGAL-GDYQLIDGLG 373
Query: 65 SGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICIL 124
+ K Y + P +A G+ E + + +R L+ I
Sbjct: 374 PEEEKRFMHHYNFPNFSVGETGPVRAP------------GRREIGHGALGERALKYIIPD 421
Query: 125 TINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKH--LAVAICCCSAESGYCI 182
T + T ++ +V+ +G+ +I + AL+DAG+P+K +A+ + E Y I
Sbjct: 422 TADFPYTIRIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTI 481
Query: 183 L 183
L
Sbjct: 482 L 482
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,180,527
Number of Sequences: 539616
Number of extensions: 4190016
Number of successful extensions: 10898
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 127
Number of HSP's that attempted gapping in prelim test: 9873
Number of HSP's gapped (non-prelim): 1141
length of query: 273
length of database: 191,569,459
effective HSP length: 116
effective length of query: 157
effective length of database: 128,974,003
effective search space: 20248918471
effective search space used: 20248918471
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)