Query 024064
Match_columns 273
No_of_seqs 161 out of 1367
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 17:34:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024064.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024064hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hkm_A OS03G0854200 protein; R 100.0 7.5E-52 2.6E-56 369.9 23.9 239 1-270 1-239 (246)
2 2nn6_D Exosome complex exonucl 100.0 7.5E-50 2.6E-54 355.0 26.6 221 1-268 13-237 (237)
3 2wnr_B Probable exosome comple 100.0 1.7E-46 5.8E-51 333.9 27.6 217 2-266 14-239 (240)
4 3m7n_D Probable exosome comple 100.0 1.4E-46 4.9E-51 337.9 25.5 219 2-266 14-242 (258)
5 2po1_A Probable exosome comple 100.0 4.3E-46 1.5E-50 333.0 26.4 222 2-271 14-244 (249)
6 2nn6_B Exosome complex exonucl 100.0 8.3E-46 2.8E-50 331.2 26.8 218 2-267 14-242 (249)
7 2wp8_B Exosome complex compone 100.0 1.3E-45 4.6E-50 329.2 27.4 221 2-271 10-242 (246)
8 2je6_B RRP41, exosome complex 100.0 2.6E-45 8.8E-50 328.1 28.1 219 2-268 18-245 (250)
9 2nn6_F MTR3, exosome component 100.0 2.5E-45 8.5E-50 332.0 15.5 223 2-271 24-269 (272)
10 3b4t_A Ribonuclease PH; RNAse, 100.0 1.6E-43 5.3E-48 318.6 26.8 219 2-269 4-250 (262)
11 3dd6_A Ribonuclease PH; exorib 100.0 4.7E-43 1.6E-47 314.6 26.5 214 3-266 10-252 (255)
12 1r6l_A Ribonuclease PH; beta-a 100.0 7.8E-43 2.7E-47 309.9 27.2 211 4-263 2-239 (239)
13 1oys_A Ribonuclease PH; transf 100.0 2E-43 6.9E-48 314.9 23.0 213 4-266 1-242 (245)
14 1udn_A Ribonuclease PH, RNAse 100.0 6.7E-43 2.3E-47 313.4 25.1 211 4-263 1-238 (255)
15 2po1_B Probable exosome comple 100.0 1.5E-41 5.2E-46 307.8 28.0 213 2-265 24-276 (277)
16 3krn_A Protein C14A4.5, confir 100.0 1.8E-45 6.1E-50 324.0 -1.5 210 11-270 2-214 (222)
17 2wnr_A Probable exosome comple 100.0 5.7E-41 2E-45 303.0 27.2 210 2-262 22-270 (271)
18 2je6_A RRP42, exosome complex 100.0 5.8E-41 2E-45 303.8 26.6 210 2-262 27-276 (277)
19 3m7n_G Probable exosome comple 100.0 1.1E-40 3.7E-45 299.6 25.1 208 2-259 20-258 (259)
20 2nn6_C Exosome complex exonucl 100.0 8.6E-41 2.9E-45 302.7 22.3 214 2-265 22-276 (278)
21 2nn6_A Polymyositis/scleroderm 100.0 4.8E-39 1.6E-43 301.0 26.7 212 2-266 37-291 (358)
22 2wp8_A Exosome complex compone 100.0 2.5E-39 8.5E-44 297.0 21.9 214 2-268 21-290 (305)
23 3gme_A Polyribonucleotide nucl 100.0 1.5E-38 5E-43 310.3 26.0 213 2-264 312-544 (549)
24 2nn6_E Exosome complex exonucl 100.0 5.4E-39 1.9E-43 294.9 21.1 215 2-266 34-293 (305)
25 3u1k_A Polyribonucleotide nucl 100.0 1.4E-37 4.8E-42 308.5 26.1 212 2-264 316-557 (630)
26 4aid_A Polyribonucleotide nucl 100.0 1.1E-37 3.9E-42 312.2 23.3 213 2-264 328-560 (726)
27 1e3p_A Guanosine pentaphosphat 100.0 3.3E-37 1.1E-41 310.9 25.1 213 2-264 353-589 (757)
28 3cdi_A Polynucleotide phosphor 100.0 7.6E-37 2.6E-41 307.2 25.3 214 2-265 318-551 (723)
29 3u1k_A Polyribonucleotide nucl 100.0 1.5E-30 5.3E-35 258.1 25.7 197 13-264 13-227 (630)
30 3gme_A Polyribonucleotide nucl 100.0 1.4E-27 4.6E-32 233.1 23.1 197 13-264 12-226 (549)
31 4aid_A Polyribonucleotide nucl 100.0 4.4E-27 1.5E-31 235.7 25.1 197 13-264 26-240 (726)
32 3cdi_A Polynucleotide phosphor 100.0 2.8E-27 9.5E-32 237.9 23.3 196 14-264 19-232 (723)
33 1e3p_A Guanosine pentaphosphat 100.0 1.2E-26 4.1E-31 234.1 25.8 201 14-264 36-267 (757)
34 2k9i_A Plasmid PRN1, complete 35.9 17 0.00057 23.1 1.7 35 233-267 15-49 (55)
35 2ba3_A NIKA; dimer, bacterial 22.3 54 0.0018 20.6 2.3 30 233-262 21-50 (51)
36 1otg_A 5-carboxymethyl-2-hydro 21.5 2E+02 0.0067 21.6 5.9 58 85-142 54-112 (125)
37 2cpg_A REPA protein, transcrip 21.3 42 0.0014 20.2 1.6 33 234-266 9-41 (45)
No 1
>3hkm_A OS03G0854200 protein; RNAse PH domain, phosphorylase, hydrolase; 1.98A {Oryza sativa japonica group}
Probab=100.00 E-value=7.5e-52 Score=369.93 Aligned_cols=239 Identities=67% Similarity=1.051 Sum_probs=199.2
Q ss_pred CCCCCCCCCCCCCCcccEEEeCCCCCCCceEEEEeCcccccccccccccceeeccccccccccCCCCcEEEEEEEcccCC
Q 024064 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLAAVYGPKAG 80 (273)
Q Consensus 1 ~~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~T~Vl~~V~gp~~~ 80 (273)
||+.|+|||+++|+|++++++|++++++|||+|++| +|+|+|+|+||++.
T Consensus 1 meg~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G------------------------------~T~Vl~~V~g~~~~ 50 (246)
T 3hkm_A 1 MEESRADGRNPNQLRPFSCTRNPLDRAHGSARWAQG------------------------------DTIVLAAVYGPKPG 50 (246)
T ss_dssp ----CTTSCCTTCCCCEEEEECCCSSSSEEEEEEET------------------------------TEEEEEEECCCEEC
T ss_pred CCCcCCCCCCCCCcCCeEEEECCCCCCCeEEEEEEC------------------------------CeEEEEEEecCcCC
Confidence 899999999999999999999999999999999999 99999999999977
Q ss_pred CCCCCCCceEEEEEEEecCCCCCCchHHHHHHHHHHHhhhhhhcCCCCCcEEEEEEEEEecCCCchhHHHHHHHHHHHhC
Q 024064 81 TKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDA 160 (273)
Q Consensus 81 ~~~~~~~~~~~l~v~~~p~~g~~~~~~~~l~~~l~~~l~s~i~~~~~p~~~I~i~v~Vl~~dG~ll~a~inAa~lAL~da 160 (273)
+++.+.|+++.++|+|+|+.|++++++++++++|+|+|+++|+++.||+|.|+|+++||++||++++|++||+++||+||
T Consensus 51 ~~~~~~~~~~~~~~~~~P~~g~~~~~~~e~~~li~r~l~~l~~~~~~~~~~I~v~~~VL~~dG~~~~aai~aa~~AL~da 130 (246)
T 3hkm_A 51 TRKGENPEKASIEVVWKPMTGQIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGNDGSLLPCAINACCAALVFA 130 (246)
T ss_dssp CCTTSCSSSCEEEEEEECSSSCCCTTHHHHHHHHHHHHHHHBCTTSSCSEEEEEEEEEEECSSCHHHHHHHHHHHHHHHH
T ss_pred CcccCCCccEEEEEEeCCCCCCCChhHHHHHHHHHHHHHHhcCccCCCcEEEEEEEEEEecCCCHHHHHHHHHHHHHHhc
Confidence 67778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccceeEEEEEEeeCCeEEeCCCHHHHhhccccEEEEecCCcccccCCCCccccCCccccceEEEEecCCCCHHHHH
Q 024064 161 GIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYF 240 (273)
Q Consensus 161 gIp~~~~~~avsv~~~~~~~~ilDPt~~Ee~~~~~~~~va~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~G~~~~~~~~ 240 (273)
||||+++++|+++|++.++.+++||+.+|+..+++.++++++..+...+.+......+++ ..+++++.+.|.++++++.
T Consensus 131 giP~~~~v~avs~g~~~~g~~llDpt~~Ee~~~~~~~~va~~~~~i~~lq~~g~~~~~~~-~~~~i~~~~~g~~~~~~l~ 209 (246)
T 3hkm_A 131 GIPLKHLAVAIGCGVLEDGEVILDTNKAEEQQLKSFAHLVFPNSRKSASSKEPNQKEEDS-ERGLITSITHGVMSEEDYF 209 (246)
T ss_dssp TCCBSSCEEEEEEEECTTSCEEESCCHHHHTTCSEEEEEEEEC---------------------CCCEEEEECEEHHHHH
T ss_pred CCCCCCceEEEEEEEEECCEEEECCCHHHHhcCCeeEEEEEeCCceEEEeeccccccccc-ccceeeeeccCCcCHHHHH
Confidence 999999999999999767899999999999999999999998754332221110011122 3456666667899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCcCC
Q 024064 241 HCLERGRAASAKLSDFLRRSLQSKLPGDLS 270 (273)
Q Consensus 241 ~~l~~A~~~~~~i~~~i~~~l~~~~~~~~~ 270 (273)
+|++.|.+++++|.++|+++|+++..+|+.
T Consensus 210 ~~l~~A~~~~~~i~~~~~~~l~~~~~~~~~ 239 (246)
T 3hkm_A 210 SCIERGLAASSRISDFMRTTLQKQAPGDVL 239 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhchhh
Confidence 999999999999999999999999999874
No 2
>2nn6_D Exosome complex exonuclease RRP46; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=7.5e-50 Score=354.97 Aligned_cols=221 Identities=38% Similarity=0.641 Sum_probs=190.7
Q ss_pred CCCCCCCCCCCC----CCcccEEEeCCCCCCCceEEEEeCcccccccccccccceeeccccccccccCCCCcEEEEEEEc
Q 024064 1 MEVDRADGRNPN----QLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLAAVYG 76 (273)
Q Consensus 1 ~~~~R~DGR~~~----e~R~i~i~~~~l~~a~GSa~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~T~Vl~~V~g 76 (273)
++++|+|||+++ |+|++.+++|++++++|||+|++| +|+|+|+|+|
T Consensus 13 ~~~~R~DGR~~~~~~~e~R~i~i~~g~l~~a~GSa~v~~G------------------------------~T~Vl~~V~g 62 (237)
T 2nn6_D 13 IRAENGTGSSPRGPGCSLRHFACEQNLLSRPDGSASFLQG------------------------------DTSVLAGVYG 62 (237)
T ss_dssp --------------CCCCCCEEEEESCCSSSSEEEEEEET------------------------------TEEEEEEEEE
T ss_pred ccCccCCCCCCCCccccccceEEEeCCCCCCCEEEEEEEC------------------------------CcEEEEEEeC
Confidence 367899999999 999999999999999999999999 9999999999
Q ss_pred ccCCCCCCCCCceEEEEEEEecCCCCCCchHHHHHHHHHHHhhhhhhcCCCCCcEEEEEEEEEecCCCchhHHHHHHHHH
Q 024064 77 PKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAA 156 (273)
Q Consensus 77 p~~~~~~~~~~~~~~l~v~~~p~~g~~~~~~~~l~~~l~~~l~s~i~~~~~p~~~I~i~v~Vl~~dG~ll~a~inAa~lA 156 (273)
|.+.+++.+.|+++.++++|+|+.|++++++++++++|+|+|+++|+++.||+|.|+|+++||++|||+++|++||+++|
T Consensus 63 ~~~~~~~~~~~~~g~l~~~~~p~~g~~~~~e~~~~~li~r~l~~~i~~~~~p~~~I~I~~~VL~~dG~~~~aai~aa~~A 142 (237)
T 2nn6_D 63 PAEVKVSKEIFNKATLEVILRPKIGLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCLNAACMA 142 (237)
T ss_dssp EEECC------CCEEEEEEEECSSSCCCHHHHHHHHHHHHHHHHHCGGGCSSSEEEEEEEEEEECSSCHHHHHHHHHHHH
T ss_pred CCcccccccCCCcEEEEEEecCCCCCCCccHHHHHHHHHHHHHHHhchhcCCceEEEEEEEEEECCCcHHHHHHHHHHHH
Confidence 99877777789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCcccceeEEEEEEeeCCeEEeCCCHHHHhhccccEEEEecCCcccccCCCCccccCCccccceEEEEecCCCCH
Q 024064 157 LVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSV 236 (273)
Q Consensus 157 L~dagIp~~~~~~avsv~~~~~~~~ilDPt~~Ee~~~~~~~~va~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~G~~~~ 236 (273)
|+|+||||+++|+++++|++.++.+++||+..||..+.+.++++++.+ .++++.++..|.++.
T Consensus 143 L~da~iP~~~~v~avs~g~~~~~~~llDp~~~Ee~~~~~~~~v~~~~~-----------------~~~i~~lq~~g~~~~ 205 (237)
T 2nn6_D 143 LVDAGVPMRALFCGVACALDSDGTLVLDPTSKQEKEARAVLTFALDSV-----------------ERKLLMSSTKGLYSD 205 (237)
T ss_dssp HHHTTCCCSSCEEEEEEEECTTCCEEESCCHHHHHHCSEEEEEEEETT-----------------TCCCCEEEEEESCCH
T ss_pred HHHcCCCcccCeeeEEEEEecCCcEEeCCCHHHHhccCCceEEEEcCC-----------------CCCEEEEEEeCCcCH
Confidence 999999999999999999876789999999999999999999999743 124555666789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Q 024064 237 DDYFHCLERGRAASAKLSDFLRRSLQSKLPGD 268 (273)
Q Consensus 237 ~~~~~~l~~A~~~~~~i~~~i~~~l~~~~~~~ 268 (273)
+++.+|++.|.+++++|+++|+++|++++.++
T Consensus 206 ~~l~~~l~~A~~~~~~i~~~~~~~l~~~~~~~ 237 (237)
T 2nn6_D 206 TELQQCLAAAQAASQHVFRFYRESLQRRYSKS 237 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999998764
No 3
>2wnr_B Probable exosome complex exonuclease 1; phosphate binding, 3'-5' exoribonuclease, hydrolase; 2.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=1.7e-46 Score=333.85 Aligned_cols=217 Identities=26% Similarity=0.399 Sum_probs=191.5
Q ss_pred CCCCCCCCCCCCCcccEEEeCCCCCCCceEEEEeCcccccccccccccceeeccccccccccCCCCcEEEEEEEcccCCC
Q 024064 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLAAVYGPKAGT 81 (273)
Q Consensus 2 ~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~T~Vl~~V~gp~~~~ 81 (273)
+++|+|||+++|+|++++++|++++++|||+|++| +|+|+|+|+||.+..
T Consensus 14 ~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G------------------------------~T~Vl~~V~gp~e~~ 63 (240)
T 2wnr_B 14 PSVREDGRAFDELRPLKIEAGILERADGSSYLEFG------------------------------GNKILVAVYGPREAQ 63 (240)
T ss_dssp -CCCTTSCCTTCCCCEEEEESCCSSSSEEEEEEET------------------------------TEEEEEEEEEEEECC
T ss_pred cCccCCCCCcCCccCeEEEeCCCCCCCEEEEEEEC------------------------------CeEEEEEEEcCCCCC
Confidence 57899999999999999999999999999999999 999999999998754
Q ss_pred C-CCCCCceEEEE--EEEecCC------CCCCchHHHHHHHHHHHhhhhhhcCCCCCcEEEEEEEEEecCCCchhHHHHH
Q 024064 82 K-KNENPEKASIE--VIWKPRT------GQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINA 152 (273)
Q Consensus 82 ~-~~~~~~~~~l~--v~~~p~~------g~~~~~~~~l~~~l~~~l~s~i~~~~~p~~~I~i~v~Vl~~dG~ll~a~inA 152 (273)
+ ..+.|+++.+. |++.|++ |++++++++++++|+++|+++++++.||+|.|+|+++||++|||+++|+++|
T Consensus 64 ~~~~~~~~~g~l~~~~~~~p~a~~~~~~~~~~~~~~~l~~ll~r~l~~~i~l~~~p~~~I~i~~~VL~~dG~~~~a~i~a 143 (240)
T 2wnr_B 64 IRKLQRPDRAVIRCRYNMAPFSVEERKRPGPDRRSVEISKITAEALRPALILEKFPRSVIDVFIEVLEAEGGTRCAGITA 143 (240)
T ss_dssp SSSSCCSSSCEEEEEEEECTTSSSSCCCSSCCHHHHHHHHHHHHHHGGGBCGGGSTTEEEEEEEEEEECCSCHHHHHHHH
T ss_pred cccccCCCcEEEEEEEEeCCCCcCCccCCCCChhHHHHHHHHHHHHHHhcCHHHCCCcEEEEEEEEEeCCCCHHHHHHHH
Confidence 4 34567776655 5555874 3467789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCcccceeEEEEEEeeCCeEEeCCCHHHHhhccccEEEEecCCcccccCCCCccccCCccccceEEEEecC
Q 024064 153 ACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHG 232 (273)
Q Consensus 153 a~lAL~dagIp~~~~~~avsv~~~~~~~~ilDPt~~Ee~~~~~~~~va~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~G 232 (273)
+++||+|+||||+++|+++++|++ ++.+++||+.+|+..+++.+++++.++ ..+++.++..|
T Consensus 144 a~~AL~da~iP~~~~v~avs~g~~-~~~~l~Dp~~~Ee~~~~~~~~v~~~~~-----------------~~~i~~lq~~g 205 (240)
T 2wnr_B 144 ASVALADAGIPMRDMVVACAAGKV-GDQVVLDLSEEEDKEGQADVPVAILPR-----------------TREITLLQSDG 205 (240)
T ss_dssp HHHHHHHTTCCBSSCCEEEEEEES-SSSEEESCCSHHHHSCSEEEEEEEETT-----------------TTEEEEEEEEE
T ss_pred HHHHHHHcCCccccceeeEEEEEE-CCEEEeCCCHHHhccCCceEEEEEECC-----------------CCCEEEEEEEc
Confidence 999999999999999999999997 789999999999999999999998421 23345556678
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 024064 233 AMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLP 266 (273)
Q Consensus 233 ~~~~~~~~~~l~~A~~~~~~i~~~i~~~l~~~~~ 266 (273)
.++.+++.+|++.|.+++++++++|+++|++++.
T Consensus 206 ~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~~ 239 (240)
T 2wnr_B 206 NLTPEEFERALDLAVEGCLRIHEVQKEALRKRYG 239 (240)
T ss_dssp CBCHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 8999999999999999999999999999998764
No 4
>3m7n_D Probable exosome complex exonuclease 1; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 3m85_D 2ba0_F 2ba1_E
Probab=100.00 E-value=1.4e-46 Score=337.91 Aligned_cols=219 Identities=26% Similarity=0.400 Sum_probs=194.0
Q ss_pred CCCCCCCCCCCCCcccEEEeCCCCCCCceEEEEeCcccccccccccccceeeccccccccccCCCCcEEEEEEEcccCCC
Q 024064 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLAAVYGPKAGT 81 (273)
Q Consensus 2 ~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~T~Vl~~V~gp~~~~ 81 (273)
+++|+|||+++|+|++++++|++++++|||+|++| +|+|+|+|+||.+..
T Consensus 14 ~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G------------------------------~T~Vl~~V~gp~e~~ 63 (258)
T 3m7n_D 14 DGLRLDGRKFDELRPIKIEASVLKRADGSCYLEMG------------------------------KNKVIAAVFGPREVH 63 (258)
T ss_dssp TTEETTSCCTTCCCCEEEEECCCSSSSEEEEEEET------------------------------TEEEEEEEEEEEECS
T ss_pred cCCCCCCCCcCCccCeEEEECCCCCCCceEEEEEC------------------------------CeEEEEEEEcccCCC
Confidence 58999999999999999999999999999999999 999999999999764
Q ss_pred CC-CCCCceEEEE--EEEecCC------CCCCchHHHHHHHHHHHhhhhhhcCCCCCcEEEEEEEEEecCCCchhHHHHH
Q 024064 82 KK-NENPEKASIE--VIWKPRT------GQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINA 152 (273)
Q Consensus 82 ~~-~~~~~~~~l~--v~~~p~~------g~~~~~~~~l~~~l~~~l~s~i~~~~~p~~~I~i~v~Vl~~dG~ll~a~inA 152 (273)
++ .+.|+++.+. +++.|++ +++++++++++++|+|+|+++|+++.||+|.|+|+++||++|||+++|++||
T Consensus 64 ~~~~~~~~~g~l~~~~~~~P~s~~~r~~~~~~~re~ei~~li~r~l~~~i~~~~~p~~~I~V~~~VL~~DG~~~~Aai~a 143 (258)
T 3m7n_D 64 PEHLQDPSKAIIRYRYNMAPFSVEERKRPGPDRRSIEISKVSKEAFEAVIMKELFPRSAIDIFVEVLQADAGSRTACLNA 143 (258)
T ss_dssp SSTTCCSSSCEEEEEEEECGGGSSSCCCSSCCHHHHHHHHHHHHHHHTTBCGGGSTTEEEEEEEEEEECCTTHHHHHHHH
T ss_pred CccccCCCceEEEEEEEeCCcccccccCCCCCHHHHHHHHHHHHHHHhhcCHHhCCceEEEEEEEEEEcCCCHHHHHHHH
Confidence 43 4567776665 5556754 4567789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCcccceeEEEEEEeeCCeEEeCCCHHHHhhccccEEEEe-cCCcccccCCCCccccCCccccceEEEEec
Q 024064 153 ACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVF-PNSILSVLPEGSSLVQGEPMEHGIITSVTH 231 (273)
Q Consensus 153 a~lAL~dagIp~~~~~~avsv~~~~~~~~ilDPt~~Ee~~~~~~~~va~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 231 (273)
+++||+||||||+++|+++++|+. ++.+++||+..|+..++..+++++ +..+. ..+++.++..
T Consensus 144 a~lAL~dagiP~~~~v~avsvg~i-~~~~llDpt~~Ee~~~~~d~~va~~~~~~~---------------~~~I~~lq~~ 207 (258)
T 3m7n_D 144 ASVALVDAGVPMKGMITSVAVGKA-DGQLVLDPMKEEDNFGEADMPFAFLIRNGK---------------IESIALLQMD 207 (258)
T ss_dssp HHHHHHHTTCCBSSEEEEEEEEEE-TTEEEESCCHHHHHHSSEEEEEEEEEETTE---------------EEEEEEEEEE
T ss_pred HHHHHHhcCCCCCCceEEEEEEEE-CCEEEECCCHHHHhccCceEEEEEEcCCCC---------------CCCEEEEEec
Confidence 999999999999999999999987 889999999999999999999999 42100 0334555567
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 024064 232 GAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLP 266 (273)
Q Consensus 232 G~~~~~~~~~~l~~A~~~~~~i~~~i~~~l~~~~~ 266 (273)
|.++.+++.++++.|.+++++|+++++++|++++.
T Consensus 208 g~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~~ 242 (258)
T 3m7n_D 208 GRMTRDEVKQAIELAKKGALQIYEMQREAILRRYI 242 (258)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 89999999999999999999999999999998764
No 5
>2po1_A Probable exosome complex exonuclease 1; RNAse PH, hydrolase/hydrolase/RNA complex; 1.94A {Pyrococcus abyssi} PDB: 2po0_A* 2pnz_A 2po2_A*
Probab=100.00 E-value=4.3e-46 Score=332.99 Aligned_cols=222 Identities=26% Similarity=0.361 Sum_probs=195.7
Q ss_pred CCCCCCCCCCCCCcccEEEeCCCCCCCceEEEEeCcccccccccccccceeeccccccccccCCCCcEEEEEEEcccCCC
Q 024064 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLAAVYGPKAGT 81 (273)
Q Consensus 2 ~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~T~Vl~~V~gp~~~~ 81 (273)
+++|+|||+++|+|++.+++|++++++|||+|++| +|+|+|+|+||.+..
T Consensus 14 ~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G------------------------------~T~Vl~~V~gp~e~~ 63 (249)
T 2po1_A 14 NGRRIDGRKKYELRPIKMEVGVLKNANGSAYIEWG------------------------------KNKIIAAVYGPRELH 63 (249)
T ss_dssp SSCBTTSCCTTCCCCEEEEECCCSSSSEEEEEEET------------------------------TEEEEEEEEEEEECS
T ss_pred cCccCCCCCcccccCEEEEeCCcCCCCEEEEEEEC------------------------------CcEEEEEEEcCcccC
Confidence 57999999999999999999999999999999999 999999999998754
Q ss_pred C-CCCCCceEEEE--EEEecCCC------CCCchHHHHHHHHHHHhhhhhhcCCCCCcEEEEEEEEEecCCCchhHHHHH
Q 024064 82 K-KNENPEKASIE--VIWKPRTG------QIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINA 152 (273)
Q Consensus 82 ~-~~~~~~~~~l~--v~~~p~~g------~~~~~~~~l~~~l~~~l~s~i~~~~~p~~~I~i~v~Vl~~dG~ll~a~inA 152 (273)
+ ..+.++++.+. |++.|++. .+++++++++++|+++|+++|+++.||+|.|+|+++||++|||+++|+++|
T Consensus 64 ~~~~~~~~~g~l~v~~~~~p~a~~~~~~~~~~~~~~~~s~li~r~l~~~i~l~~~p~~~i~I~~~VL~~dG~~~~aai~a 143 (249)
T 2po1_A 64 PKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSIEISKVIKGALEPALILEMFPRTAIDVFIEVLQADAGTRVAGITA 143 (249)
T ss_dssp SGGGCCSSSCEEEEEEEECGGGSSSCCCSSCCHHHHHHHHHHHHHHGGGBCGGGSTTEEEEEEEEEEECCSCHHHHHHHH
T ss_pred cccccCCCceEEEEEEEeCCcccccccCCCCCHHHHHHHHHHHHHHHhhccHHHCCCCEEEEEEEEEecCCCHHHHHHHH
Confidence 4 44567776655 55557542 356788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCcccceeEEEEEEeeCCeEEeCCCHHHHhhccccEEEEecCCcccccCCCCccccCCccccceEEEEecC
Q 024064 153 ACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHG 232 (273)
Q Consensus 153 a~lAL~dagIp~~~~~~avsv~~~~~~~~ilDPt~~Ee~~~~~~~~va~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~G 232 (273)
+++||+|+||||+++|+++++|++ ++.+++||+.+|+..+++.+++++.++ ..+++.++..|
T Consensus 144 a~~AL~da~iP~~~~v~avs~g~~-~~~~l~Dp~~~Ee~~~~~~l~va~~~~-----------------~~~i~~~~~~g 205 (249)
T 2po1_A 144 ASLALADAGIPMRDLVAACAAGKI-EGEIVLDLNKEEDNYGEADVPVAIMPL-----------------KNDITLLQMDG 205 (249)
T ss_dssp HHHHHHHTTCCBSSCCEEEEEEEE-TTEEEESCCHHHHHTCSEEEEEEEEGG-----------------GTEEEEECCEE
T ss_pred HHHHHHhcCCCccCceEEEEEEEE-CCEEEecCcHHHhccCCceEEEEEECC-----------------CCCEEEEEEEc
Confidence 999999999999999999999997 899999999999999999999998321 12344455678
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcCCc
Q 024064 233 AMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGDLSK 271 (273)
Q Consensus 233 ~~~~~~~~~~l~~A~~~~~~i~~~i~~~l~~~~~~~~~~ 271 (273)
.++.+++.++++.|.+++++++++|+++|+++..+...|
T Consensus 206 ~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~~~~~~~ 244 (249)
T 2po1_A 206 YLTKDEFIEAVKLAIKGAKAVYQKQREALKEKYLKIAQE 244 (249)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 899999999999999999999999999999887665443
No 6
>2nn6_B Exosome complex exonuclease RRP41; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=8.3e-46 Score=331.16 Aligned_cols=218 Identities=24% Similarity=0.358 Sum_probs=193.6
Q ss_pred CCCCCCCCCCCCCcccEEEeCCCCCCCceEEEEeCcccccccccccccceeeccccccccccCCCCcEEEEEEEcccCCC
Q 024064 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLAAVYGPKAGT 81 (273)
Q Consensus 2 ~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~T~Vl~~V~gp~~~~ 81 (273)
+++|+|||+++|+|++++++|++++++|||+|++| +|+|+|+|+||++++
T Consensus 14 ~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G------------------------------~T~Vl~~V~g~~~~~ 63 (249)
T 2nn6_B 14 QGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQG------------------------------NTKALAVVYGPHEIR 63 (249)
T ss_dssp TTBCSSSSCTTSCCCEEEEESCSSSSSEEEEEEES------------------------------SCEEEEEEEEEEECC
T ss_pred CCcCCCCCCcCCcCCeEEEeCCCCCCCeEEEEEEC------------------------------CeEEEEEEEccCCcc
Confidence 57899999999999999999999999999999999 999999999999764
Q ss_pred CC--CCCCceEEE--EEEEecCC-------CCCCchHHHHHHHHHHHhhhhhhcCCCCCcEEEEEEEEEecCCCchhHHH
Q 024064 82 KK--NENPEKASI--EVIWKPRT-------GQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAI 150 (273)
Q Consensus 82 ~~--~~~~~~~~l--~v~~~p~~-------g~~~~~~~~l~~~l~~~l~s~i~~~~~p~~~I~i~v~Vl~~dG~ll~a~i 150 (273)
.. .+.++++.+ ++++.|++ |++++++++++++|+++|+++|+++.||+|.|+|+++||++|||+++|++
T Consensus 64 ~~~~~~~~~~g~l~~~~~~~p~a~~~~~~~~~~~~~~~~~~~ll~r~l~~~i~~~~~p~~~I~i~~~VL~~dG~~~~A~i 143 (249)
T 2nn6_B 64 GSRARALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACV 143 (249)
T ss_dssp SSSCCCCCSSCCEEEEEEECTTTSSSCCCTTTSTHHHHHHHHHHHHHHHHTTCGGGCTTEEEEEEEEEEECCSCHHHHHH
T ss_pred ccccccCCCcEEEEEEEEcCCCcccccccCCCCCHhHHHHHHHHHHHHHHhcCHHHCCCcEEEEEEEEEeCCCCHHHHHH
Confidence 32 246766554 55666754 34567889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCcccceeEEEEEEeeCCeEEeCCCHHHHhhccccEEEEecCCcccccCCCCccccCCccccceEEEEe
Q 024064 151 NAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVT 230 (273)
Q Consensus 151 nAa~lAL~dagIp~~~~~~avsv~~~~~~~~ilDPt~~Ee~~~~~~~~va~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 230 (273)
||+++||+|+||||+++|+++++|++ ++.+++||+.+|+..+++.++++++.+ ..+++.++.
T Consensus 144 ~aa~~AL~da~iPl~~~v~avs~g~~-~~~~l~Dp~~~Ee~~~~~~~~v~~~~~-----------------~~~i~~lq~ 205 (249)
T 2nn6_B 144 NAATLAVLDAGIPMRDFVCACSAGFV-DGTALADLSHVEEAAGGPQLALALLPA-----------------SGQIALLEM 205 (249)
T ss_dssp HHHHHHHHHTCCCCSSCCEEEEEEEE-TTEEEESCCHHHHTSSCCCEEEEEETT-----------------TTEEEEEEE
T ss_pred HHHHHHHHhcCCcccCCeeeEEEEEE-CCeEEECCChHHhccCCcEEEEEEECC-----------------CCCEEEEEE
Confidence 99999999999999999999999997 889999999999999999999998521 234555667
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 024064 231 HGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPG 267 (273)
Q Consensus 231 ~G~~~~~~~~~~l~~A~~~~~~i~~~i~~~l~~~~~~ 267 (273)
.|.++.+++.+|++.|.+++++|+++|+++|+++..+
T Consensus 206 ~g~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~~~ 242 (249)
T 2nn6_B 206 DARLHEDHLERVLEAAAQAARDVHTLLDRVVRQHVRE 242 (249)
T ss_dssp CSCCBTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999999887654
No 7
>2wp8_B Exosome complex component SKI6; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-45 Score=329.17 Aligned_cols=221 Identities=26% Similarity=0.321 Sum_probs=189.6
Q ss_pred CCCCCCCCCCCCCcccEEEeCCCCCC-CceEEEEeCcccccccccccccceeeccccccccccCCCCcEEEEEEEcccCC
Q 024064 2 EVDRADGRNPNQLRPLACSCSILHRA-HGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLAAVYGPKAG 80 (273)
Q Consensus 2 ~~~R~DGR~~~e~R~i~i~~~~l~~a-~GSa~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~T~Vl~~V~gp~~~ 80 (273)
+++|+|||+++|+|++.+++|+++++ +|||+|++| +|+|+|+|+||.+.
T Consensus 10 ~~~R~DGR~~~e~R~i~i~~g~l~~aa~GSa~v~~G------------------------------~T~Vl~~V~~~~~~ 59 (246)
T 2wp8_B 10 EGLRLDGRRWNELRRFESSINTHPHAADGSSYMEQG------------------------------NNKIITLVKGPKEP 59 (246)
T ss_dssp TSCCTTSCCTTCCCCEEEEECSCTTTCSEEEEEEET------------------------------TEEEEEEEEEEEC-
T ss_pred cCccCCCCCcCCccCeEEEeCCCCCCCCceEEEEEC------------------------------CeEEEEEEEecCCc
Confidence 57899999999999999999999999 999999999 99999999999974
Q ss_pred -CCCCCCCceEEEEEEE--ecCC--------CCCCchHHHHHHHHHHHhhhhhhcCCCCCcEEEEEEEEEecCCCchhHH
Q 024064 81 -TKKNENPEKASIEVIW--KPRT--------GQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCA 149 (273)
Q Consensus 81 -~~~~~~~~~~~l~v~~--~p~~--------g~~~~~~~~l~~~l~~~l~s~i~~~~~p~~~I~i~v~Vl~~dG~ll~a~ 149 (273)
++..+.++++.+.|+| .|++ |++++++++++++|+++|++++.++.||+|.|+|+++||++||++++|+
T Consensus 60 ~~~~~~~~~~g~l~v~~~~~p~a~~~~~~r~g~~~~~~~~~s~li~r~l~~~i~~~~~p~~~I~i~~~VL~~dG~~~~aa 139 (246)
T 2wp8_B 60 RLKSQMDTSKALLNVSVNINKFSKFERSKSSHKNERRVLEIQTSLVRMFEKNVMLNIYPRTVIDIEIHVLEQDGGIMGSL 139 (246)
T ss_dssp -----CCSSSEEEEEEEEEC--------------CHHHHHHHHHHHHHHHHHBCTTTSCSEEEEEEEEEEECCSCHHHHH
T ss_pred ccccccCCCcEEEEEEEEeCCcccccccccCCCCChhHHHHHHHHHHHHHHhhhHHHCCCeEEEEEEEEEECCCCHHHHH
Confidence 3345668887765555 5653 3455788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCcccceeEEEEEEeeCCeEEeCCCHHHHhhccccEEEEecCCcccccCCCCccccCCccccceEEEE
Q 024064 150 INAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSV 229 (273)
Q Consensus 150 inAa~lAL~dagIp~~~~~~avsv~~~~~~~~ilDPt~~Ee~~~~~~~~va~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 229 (273)
+||+++||+|+||||+++|+++++|+. ++.+++||+.+|+ .+++.+++++..+ ..+++.++
T Consensus 140 i~aa~~AL~~a~iP~~~~v~avs~g~~-~~~~l~Dp~~~Ee-~~~~~l~v~~~~~-----------------~~~i~~i~ 200 (246)
T 2wp8_B 140 INGITLALIDAGISMFDYISGISVGLY-DTTPLLDTNSLEE-NAMSTVTLGVVGK-----------------SEKLSLLL 200 (246)
T ss_dssp HHHHHHHHHHHTCCBSSCEEEEEEEEE-TTEEESSCCHHHH-HHSEEEEEEEETT-----------------SSCEEEEE
T ss_pred HHHHHHHHHHcCCcccCceeEEEEEEE-CCEEEECCCchhh-ccCceEEEEEeCC-----------------CCCEEEEE
Confidence 999999999999999999999999997 8899999999999 9999999988421 23355556
Q ss_pred ecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcCCc
Q 024064 230 THGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGDLSK 271 (273)
Q Consensus 230 ~~G~~~~~~~~~~l~~A~~~~~~i~~~i~~~l~~~~~~~~~~ 271 (273)
..|.++.+++.+|++.|.++++++.+++++++++...+.+..
T Consensus 201 ~~g~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~~~~~~~ 242 (246)
T 2wp8_B 201 VEDKIPLDRLENVLAIGIAGAHRVRDLMDEELRKHAQKRVSN 242 (246)
T ss_dssp ECSCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred ecCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 778999999999999999999999999999999887776543
No 8
>2je6_B RRP41, exosome complex exonuclease 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: d.14.1.4 d.101.1.1 PDB: 2jea_B* 2jeb_B* 2br2_B 2c37_B* 2c38_B* 2c39_B* 3l7z_B
Probab=100.00 E-value=2.6e-45 Score=328.09 Aligned_cols=219 Identities=26% Similarity=0.391 Sum_probs=193.9
Q ss_pred CCCCCCCCCCCCCcccEEEeCCCCCCCceEEEEeCcccccccccccccceeeccccccccccCCCCcEEEEEEEcccCCC
Q 024064 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLAAVYGPKAGT 81 (273)
Q Consensus 2 ~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~T~Vl~~V~gp~~~~ 81 (273)
+++|+|||+++|+|++.+++|++++++|||+|++| +|+|+|+|+||++..
T Consensus 18 ~~~R~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G------------------------------~T~Vl~~V~g~~e~~ 67 (250)
T 2je6_B 18 DGKRTDGRKPDELRSIKIELGVLKNADGSAIFEMG------------------------------NTKAIAAVYGPKEMH 67 (250)
T ss_dssp TSCBTTSCCTTCCCCEEEEESCCSSSSEEEEEEET------------------------------TEEEEEEEEEEEECS
T ss_pred CCccCCCCCccCcCCeEEEeCCCCCCCeEEEEEEC------------------------------CcEEEEEEEcccccc
Confidence 57899999999999999999999999999999999 999999999998753
Q ss_pred C-CCCCCceEEEE--EEEecCC------CCCCchHHHHHHHHHHHhhhhhhcCCCCCcEEEEEEEEEecCCCchhHHHHH
Q 024064 82 K-KNENPEKASIE--VIWKPRT------GQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINA 152 (273)
Q Consensus 82 ~-~~~~~~~~~l~--v~~~p~~------g~~~~~~~~l~~~l~~~l~s~i~~~~~p~~~I~i~v~Vl~~dG~ll~a~inA 152 (273)
+ ..+.++++.+. |++.|++ |++++++++++++|+++|++++.++.||+|.|+|+++||++||++++|+++|
T Consensus 68 ~~~~~~~~~g~l~v~~~~~p~a~~~~~~g~~~~~e~~~s~li~r~l~~~i~~~~~p~~~i~I~~~VL~~DG~~~~aai~a 147 (250)
T 2je6_B 68 PRHLSLPDRAVLRVRYHMTPFSTDERKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGSRLVSLMA 147 (250)
T ss_dssp SGGGSCSSSCEEEEEEEECTTSSSSCCCSSCCHHHHHHHHHHHHHHHTTBCGGGSTTEEEEEEEEEEECSSCHHHHHHHH
T ss_pred cccccCCCcEEEEEEEEeCCCccCCccCCCCChhHHHHHHHHHHHHHhhcCHhhCCCcEEEEEEEEEeCCCCHHHHHHHH
Confidence 3 44567776655 5556753 3467789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCcccceeEEEEEEeeCCeEEeCCCHHHHhhccccEEEEecCCcccccCCCCccccCCccccceEEEEecC
Q 024064 153 ACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHG 232 (273)
Q Consensus 153 a~lAL~dagIp~~~~~~avsv~~~~~~~~ilDPt~~Ee~~~~~~~~va~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~G 232 (273)
+++||.|+||||+++|+++++|+. ++.+++||+.+|+..+++.+++++.++ ..+++.++..|
T Consensus 148 a~~AL~~a~iP~~~~v~avsvg~~-~~~~l~Dpt~~Ee~~~~~~l~va~~~~-----------------~~~i~~v~~~g 209 (250)
T 2je6_B 148 ASLALADAGIPMRDLIAGVAVGKA-DGVIILDLNETEAMWGEADMPIAMMPS-----------------LNQVTLFQLNG 209 (250)
T ss_dssp HHHHHHHTTCCBSSCCEEEEEEEE-TTEEEESCCHHHHHHSSEEEEEEEEGG-----------------GTEEEEEEEEE
T ss_pred HHHHHHhcCCCccCceEEEEEEEE-CCEEEeCCCHHHHhcCCceEEEEEECC-----------------CCCEEEEEEEc
Confidence 999999999999999999999987 899999999999999999999998421 23345556678
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Q 024064 233 AMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGD 268 (273)
Q Consensus 233 ~~~~~~~~~~l~~A~~~~~~i~~~i~~~l~~~~~~~ 268 (273)
.++++++.++++.|.++++++++++++++++...+.
T Consensus 210 ~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~~~~ 245 (250)
T 2je6_B 210 SMTPDEFRQAFDLAVKGINIIYNLEREALKSKYVEF 245 (250)
T ss_dssp CBCHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGC--
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999887654
No 9
>2nn6_F MTR3, exosome component 6; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=2.5e-45 Score=332.00 Aligned_cols=223 Identities=26% Similarity=0.352 Sum_probs=190.4
Q ss_pred CCCCCCCCCCCCCcccEEEeCCCCCCCceEEEEeCcccccccccccccceeeccccccccccCCCCcEEEEEEEcccCCC
Q 024064 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLAAVYGPKAGT 81 (273)
Q Consensus 2 ~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~T~Vl~~V~gp~~~~ 81 (273)
++.|+|||+++|+|++.+++|++++++|||+|++| +|+|+|+|+||++.+
T Consensus 24 ~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G------------------------------~T~Vl~~V~~~~~~~ 73 (272)
T 2nn6_F 24 EEEAPGTRDPTRLRPVYARAGLLSQAKGSAYLEAG------------------------------GTKVLCAVSGPRQAE 73 (272)
T ss_dssp -----CCCCSSCCCCCCCCCSCCSSSSEEECCCSS------------------------------SCEEEEEEEEEECC-
T ss_pred cCccCCCCCccccCCeEEEeCCCCCCCeEEEEEeC------------------------------CeEEEEEEECCCccc
Confidence 57899999999999999999999999999999999 999999999999876
Q ss_pred CCCC------------CCc--eEEEEEEEecCCC------CCCchHHHHHHHHHHHhhhhhhcCCCCCcEEEEEEEEEec
Q 024064 82 KKNE------------NPE--KASIEVIWKPRTG------QIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHD 141 (273)
Q Consensus 82 ~~~~------------~~~--~~~l~v~~~p~~g------~~~~~~~~l~~~l~~~l~s~i~~~~~p~~~I~i~v~Vl~~ 141 (273)
+..+ .++ .+.++|+++|+++ ++++++++++++|+|+|++++.++.||+|.|+|+++||++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~g~l~v~~~~~p~a~~~~~~~~~~~~e~~~s~li~r~l~~~i~~~~~p~~~I~I~~~VL~~ 153 (272)
T 2nn6_F 74 GGERGGGPAGAGGEAPAALRGRLLCDFRRAPFAGRRRRAPPGGCEERELALALQEALEPAVRLGRYPRAQLEVSALLLED 153 (272)
T ss_dssp ------------------CBCEEEEEEEECTTSSSSCCCSCCHHHHHHHHHHHHHHHTTTBCSTTSBTCEEEEEEEEEEC
T ss_pred ccccccccccccccccCCCceEEEEEEEecCCCcCCccCCCCCHHHHHHHHHHHHHHHHhccHHHCCceEEEEEEEEEeC
Confidence 5433 444 4566777788754 3567889999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHhCCCCcccceeEEEEEEe--eCCeEEeCCCHHHHhhccccEEEEecCCcccccCCCCccccCC
Q 024064 142 DGALLPCAINAACAALVDAGIPMKHLAVAICCCSA--ESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGE 219 (273)
Q Consensus 142 dG~ll~a~inAa~lAL~dagIp~~~~~~avsv~~~--~~~~~ilDPt~~Ee~~~~~~~~va~~~~~~~~~~~~~~~~~~~ 219 (273)
||++++|++||+++||+|+||||+++++++++|++ .++.+|+||+..|+..++..++|++..+
T Consensus 154 DG~~~~aai~aa~~AL~da~iP~~~~v~avsvg~~~~~~~~~llDpt~~Ee~~~~~~l~va~~~~--------------- 218 (272)
T 2nn6_F 154 GGSALAAALTAAALALADAGVEMYDLVVGCGLSLAPGPAPTWLLDPTRLEEERAAAGLTVALMPV--------------- 218 (272)
T ss_dssp CSSHHHHHHHHHHHHHHHHCCCBSSCCEEEECCCCSCSSCCCCSSCCTTTGGGCSSEEEEEEETT---------------
T ss_pred CCCHHHHHHHHHHHHHHHcCCcccCcEEEEEEEEeeccCCeEEeCCCHHHhccCCceEEEEEeCC---------------
Confidence 99999999999999999999999999999999984 4889999999999999999999997532
Q ss_pred ccccceEEEEecCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcCCc
Q 024064 220 PMEHGIITSVTHGAMSV-DDYFHCLERGRAASAKLSDFLRRSLQSKLPGDLSK 271 (273)
Q Consensus 220 ~~~~~~v~~~~~G~~~~-~~~~~~l~~A~~~~~~i~~~i~~~l~~~~~~~~~~ 271 (273)
..+++.++..|.++. +++.+|++.|.+++++|+++|++++++...+++..
T Consensus 219 --~~~I~~i~~~g~~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~~~~~~~ 269 (272)
T 2nn6_F 219 --LNQVAGLLGSGEGGLTESWAEAVRLGLEGCQRLYPVLQQSLVRAARRRGAA 269 (272)
T ss_dssp --TTEEEEEEEECCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred --CCCEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 234555567789999 99999999999999999999999999887766544
No 10
>3b4t_A Ribonuclease PH; RNAse, tRNA nucleotidyltransferase, RPHA, STRU genomics, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=100.00 E-value=1.6e-43 Score=318.63 Aligned_cols=219 Identities=21% Similarity=0.243 Sum_probs=190.6
Q ss_pred CCCCCCCCCCCCCcccEEEeCCCCCCCceEEEEeCcccccccccccccceeeccccccccccCCCCcEEEEEEEcccCCC
Q 024064 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLAAVYGPKAGT 81 (273)
Q Consensus 2 ~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~T~Vl~~V~gp~~~~ 81 (273)
.++|+|||+++|+|++.+++|++++++|||+|++| +|+|+|+|++|.+.+
T Consensus 4 ~g~R~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G------------------------------~T~Vl~~V~~~~~~p 53 (262)
T 3b4t_A 4 VSKREDGRLDHELRPVIITRGFTENPAGSVLIEFG------------------------------HTKVLCTASVTEGVP 53 (262)
T ss_dssp -CCSTTSCCTTCCCCEEEEETSSSSSSEEEEEEET------------------------------TEEEEEEEEEEESCC
T ss_pred CCcCCCCCCCcCcCCeEEEeCCcCCCCeEEEEEEC------------------------------CCEEEEEEEecCcCC
Confidence 36899999999999999999999999999999999 999999999998754
Q ss_pred CCCCCCceEEE--EEEEecCC-----------CCCCchHHHHHHHHHHHhhhhhhcCCCCCcEEEEEEEEEecCCCchhH
Q 024064 82 KKNENPEKASI--EVIWKPRT-----------GQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPC 148 (273)
Q Consensus 82 ~~~~~~~~~~l--~v~~~p~~-----------g~~~~~~~~l~~~l~~~l~s~i~~~~~p~~~I~i~v~Vl~~dG~ll~a 148 (273)
+....++++.+ ++++.|++ |+++.++++++++|+|+|+++|.++.||+|+|+|+++||++||++++|
T Consensus 54 ~~~~~~~~g~l~v~~~~~p~a~~~~~~Re~~~G~~~~~~~~isrli~r~lr~~i~~~~l~~~~I~i~~~VL~~DG~~~~a 133 (262)
T 3b4t_A 54 RWRKATGLGWLTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQADGGTRTA 133 (262)
T ss_dssp ----CCSCCEEEEEEEECGGGSSSCCCCHHHHTSCCHHHHHHHHHHHHHHHTTBCHHHHCSEEEEEEEEEEECSSCHHHH
T ss_pred CccCCCCceEEEEEEEeCCCccccccccccCCCCCCHHHHHHHHHHHHHHHHhcCHhHCCCeEEEEEEEEEeCCCCHHHH
Confidence 33333555544 55556752 456778999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC------------CCCcccceeEEEEEEeeCCeEEeCCCHHHHhhccccEEEEecCCcccccCCCCccc
Q 024064 149 AINAACAALVDA------------GIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLV 216 (273)
Q Consensus 149 ~inAa~lAL~da------------gIp~~~~~~avsv~~~~~~~~ilDPt~~Ee~~~~~~~~va~~~~~~~~~~~~~~~~ 216 (273)
|+||+++||+++ +|||+++|+++++|++ ++.+++||+.+|+..++..++++++..
T Consensus 134 ai~aa~~AL~~a~~~~~~~~~~~~~ip~~~~v~avsvg~~-~g~~l~Dpt~~Ee~~~~~~l~va~~~~------------ 200 (262)
T 3b4t_A 134 AITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVV-DGRIRVDLPYEEDSRAEVDMNVVATDT------------ 200 (262)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSSSCCBCSCEEEEEEEEE-TTEEEESCCHHHHTTCSEEEEEEEETT------------
T ss_pred HHHHHHHHHHHhhhhhccCCccccCCcccCceeEEEEEEE-CCEEEECCCHHHHhccCceEEEEEcCC------------
Confidence 999999999999 9999999999999997 899999999999999999999998632
Q ss_pred cCCccccceEEEEecC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcC
Q 024064 217 QGEPMEHGIITSVTHG---AMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGDL 269 (273)
Q Consensus 217 ~~~~~~~~~v~~~~~G---~~~~~~~~~~l~~A~~~~~~i~~~i~~~l~~~~~~~~ 269 (273)
..++.++..| .++++++.+|++.|.++++++.+++++++++...+..
T Consensus 201 ------g~i~~i~~~g~~~~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~~~~~ 250 (262)
T 3b4t_A 201 ------GTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALALPYPGVL 250 (262)
T ss_dssp ------SCEEEEEECSSCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSSCC
T ss_pred ------CCEEEEEeeCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhccC
Confidence 2244445543 7999999999999999999999999999998877654
No 11
>3dd6_A Ribonuclease PH; exoribonuclease, tRNA maturation, RNAse PH., transferase; 1.70A {Bacillus anthracis}
Probab=100.00 E-value=4.7e-43 Score=314.57 Aligned_cols=214 Identities=21% Similarity=0.251 Sum_probs=188.0
Q ss_pred CCCCCCCCCCCCcccEEEeCCCCCCCceEEEEeCcccccccccccccceeeccccccccccCCCCcEEEEEEEcccCCCC
Q 024064 3 VDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLAAVYGPKAGTK 82 (273)
Q Consensus 3 ~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~T~Vl~~V~gp~~~~~ 82 (273)
-.|.|||+++|+|++.+++|++++++|||+|++| +|+|+|+|++|.+.++
T Consensus 10 ~~~~~~R~~~e~R~i~i~~g~~~~A~GSa~v~~G------------------------------~T~Vl~~V~~~~~~p~ 59 (255)
T 3dd6_A 10 HMRVDGREKTELRHIHIHTNYLKHPEGSVLIEVG------------------------------DTKVICSATIEERVPP 59 (255)
T ss_dssp -CCCCSCCTTCCCCEEEEESCSSSSSEEEEEEET------------------------------TEEEEEEEEEESCCCG
T ss_pred ccccCCCCcCCCCCEEEEECCCCCCCeEEEEEEC------------------------------CeEEEEEEEecCCCCC
Confidence 4799999999999999999999999999999999 9999999999986544
Q ss_pred CCCCCceEEE--EEEEecCC-----------CCCCchHHHHHHHHHHHhhhhhhcCCCCCcEEEEEEEEEecCCCchhHH
Q 024064 83 KNENPEKASI--EVIWKPRT-----------GQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCA 149 (273)
Q Consensus 83 ~~~~~~~~~l--~v~~~p~~-----------g~~~~~~~~l~~~l~~~l~s~i~~~~~p~~~I~i~v~Vl~~dG~ll~a~ 149 (273)
....|+++.+ ++++.|++ |++++++.+++++|+|+|+++|+++.+|+|.|+|+++||++|||+++|+
T Consensus 60 ~~~~~~~g~l~v~~~~~P~a~~~~~~Re~~~g~~~~~~~eisrli~r~lr~~i~~~~l~~~~I~V~~~VL~~DG~~~~aa 139 (255)
T 3dd6_A 60 FMRGEGKGWVTAEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQADGGTRTAS 139 (255)
T ss_dssp GGTTSSCCEEEEEEEECTTSSSSCCCCCCC-CCCCHHHHHHHHHHHHHHHHHBCHHHHCSCEEEEEEEEEECSSCHHHHH
T ss_pred CCCCCCceEEEEEEEECCCcccccccccccCCCCCHHHHHHHHHHHHHHHHhcChhhcCCeEEEEEEEEEECCCCHHHHH
Confidence 4455676655 55555743 5567788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhC-----------CCCcccceeEEEEEEeeCCeEE-eCCCHHHHhhccccEEEEecCCcccccCCCCcccc
Q 024064 150 INAACAALVDA-----------GIPMKHLAVAICCCSAESGYCI-LDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQ 217 (273)
Q Consensus 150 inAa~lAL~da-----------gIp~~~~~~avsv~~~~~~~~i-lDPt~~Ee~~~~~~~~va~~~~~~~~~~~~~~~~~ 217 (273)
++|+++||.|+ +|||+++|+|+++|++ ++.++ +||+.+|+..++..++++++.
T Consensus 140 i~aa~~AL~~a~~p~~~~g~~~~iPl~~~v~avsvg~i-~g~~vllDpt~~Ee~~~~~~l~Va~~~-------------- 204 (255)
T 3dd6_A 140 ITGAYVAMVLAFEKLLQAEKVSKIPVKDYLAATSVGIV-EEQGVVLDLNYAEDSKADVDMNVIMTG-------------- 204 (255)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSSSCCBSSCEEEEEEEEE-TTTEEEESCCHHHHHTEEEEEEEEEET--------------
T ss_pred HHHHHHHHHHhhhhhhhcCcccCCCccCceeEEEEEEE-CCEEEEeCCCHHHHhhcCceEEEEEcC--------------
Confidence 99999999999 9999999999999998 67777 999999999999999999864
Q ss_pred CCccccc-eEEEEec---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 024064 218 GEPMEHG-IITSVTH---GAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLP 266 (273)
Q Consensus 218 ~~~~~~~-~v~~~~~---G~~~~~~~~~~l~~A~~~~~~i~~~i~~~l~~~~~ 266 (273)
++ ++.++.. +.++++++.+|++.|.+++++|.+++++++++...
T Consensus 205 -----~g~i~~vq~~g~~~~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~~ 252 (255)
T 3dd6_A 205 -----KGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDIQKEALGDIVS 252 (255)
T ss_dssp -----TSCEEEEEEEESSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGG
T ss_pred -----CCcEEEEEecCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33 4444443 47999999999999999999999999999986543
No 12
>1r6l_A Ribonuclease PH; beta-alpha-beta-alpha fold, hexamer, phosphate bound, transf; HET: NHE; 1.90A {Pseudomonas aeruginosa} SCOP: d.14.1.4 d.101.1.1 PDB: 1r6m_A
Probab=100.00 E-value=7.8e-43 Score=309.86 Aligned_cols=211 Identities=24% Similarity=0.302 Sum_probs=184.5
Q ss_pred CCCCCCCCCCCcccEEEeCCCCCCCceEEEEeCcccccccccccccceeeccccccccccCCCCcEEEEEEEcccCCCCC
Q 024064 4 DRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLAAVYGPKAGTKK 83 (273)
Q Consensus 4 ~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~T~Vl~~V~gp~~~~~~ 83 (273)
.|+|||+++|+|++.+++|++++++|||+|++| +|+|+|+|++|...+..
T Consensus 2 ~R~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G------------------------------~T~Vl~~V~~~~~~p~~ 51 (239)
T 1r6l_A 2 NRPSGRAADQLRPIRITRHYTKHAEGSVLVEFG------------------------------DTKVICTVSAESGVPRF 51 (239)
T ss_dssp CCTTCCCTTCCCCEEEESSCSSSSSEEEEEEET------------------------------TEEEEEEEEEEESCSSC
T ss_pred cCCCCCCCCCcCCeEEEeCCcCCCCeEEEEEEC------------------------------CEEEEEEEEccCccCCc
Confidence 399999999999999999999999999999999 99999999999875433
Q ss_pred CCCCceEE--EEEEEecCC-----------CCCCchHHHHHHHHHHHhhhhhhcCCCCCcEEEEEEEEEecCCCchhHHH
Q 024064 84 NENPEKAS--IEVIWKPRT-----------GQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAI 150 (273)
Q Consensus 84 ~~~~~~~~--l~v~~~p~~-----------g~~~~~~~~l~~~l~~~l~s~i~~~~~p~~~I~i~v~Vl~~dG~ll~a~i 150 (273)
...++++. +++.+.|++ |+++.++++++++|+++|+++|+++.+|+|.|+|+++||++||++++||+
T Consensus 52 ~~~~~~g~l~v~~~~~p~~~~~r~~Re~~~G~~~~~~~~isrli~r~l~~~i~~~~l~~~~i~I~~~VL~~DG~~~~aai 131 (239)
T 1r6l_A 52 LKGQGQGWLTAEYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDCDVIQADGGTRTASI 131 (239)
T ss_dssp CC---CCEEEEEEEECTTSSSSCCCCHHHHTSCCHHHHHHHHHHHHHHHHTBCGGGTCSEEEEEEEEEEECSSCHHHHHH
T ss_pred cCCCCcEEEEEEEEeCCCccccccccccCCCCCcHHHHHHHHHHHHHHHHhcCHHHcCCeEEEEEEEEEeCCCCHHHHHH
Confidence 33356654 455666753 45677889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCC-----------CCcccceeEEEEEEeeCCeEEeCCCHHHHhhccccEEEEecCCcccccCCCCccccCC
Q 024064 151 NAACAALVDAG-----------IPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGE 219 (273)
Q Consensus 151 nAa~lAL~dag-----------Ip~~~~~~avsv~~~~~~~~ilDPt~~Ee~~~~~~~~va~~~~~~~~~~~~~~~~~~~ 219 (273)
||+++||+||| |||+++|+++++|++ ++.+++||+.+|+..+++.++++++..
T Consensus 132 ~aa~~AL~da~~~~~~~~~~~~ip~~~~~~avs~g~~-~~~~l~Dpt~~Ee~~~~~~l~va~~~~--------------- 195 (239)
T 1r6l_A 132 TGATVALIDALAVLKKRGALKGNPLKQMVAAVSVGIY-QGVPVLDLDYLEDSAAETDLNVVMTDA--------------- 195 (239)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSSCCBCCCEEEEEEEEE-TTEEEESCCHHHHHHCSEEEEEEEETT---------------
T ss_pred HHHHHHHHHhcchhcccCcccccCccCceeEEEEEEE-CCEEEECCCHHHHhcCCceEEEEEeCC---------------
Confidence 99999999999 999999999999998 889999999999999999999999642
Q ss_pred ccccceEEEEec---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024064 220 PMEHGIITSVTH---GAMSVDDYFHCLERGRAASAKLSDFLRRSLQS 263 (273)
Q Consensus 220 ~~~~~~v~~~~~---G~~~~~~~~~~l~~A~~~~~~i~~~i~~~l~~ 263 (273)
..++.++.. +.++++++.+|++.|.++++++++++++++++
T Consensus 196 ---g~i~~~~~~g~~~~~~~~~l~~~l~~a~~~~~~i~~~~~~~l~~ 239 (239)
T 1r6l_A 196 ---GGFIEVQGTAEGAPFRPAELNAMLELAQQGMQELFELQRAALAE 239 (239)
T ss_dssp ---SCEEEEEEEESSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ---CCEEEEEEeCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 123434432 48999999999999999999999999999864
No 13
>1oys_A Ribonuclease PH; transferase, tRNA processing; 2.40A {Bacillus subtilis} SCOP: d.14.1.4 d.101.1.1 PDB: 1oyp_A 1oyr_A
Probab=100.00 E-value=2e-43 Score=314.90 Aligned_cols=213 Identities=22% Similarity=0.240 Sum_probs=174.7
Q ss_pred CCCCCCCCCCCcccEEEeCCCCCCCceEEEEeCcccccccccccccceeeccccccccccCCCCcEEEEEEEcccCCCCC
Q 024064 4 DRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLAAVYGPKAGTKK 83 (273)
Q Consensus 4 ~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~T~Vl~~V~gp~~~~~~ 83 (273)
.|+|||+++|+|++.+++|++++++|||+|++| +|+|+|+|++|...++.
T Consensus 1 ~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G------------------------------~T~Vl~~V~~~~~~p~~ 50 (245)
T 1oys_A 1 MRHDGRQHDELRPITFDLDFISHPEGSVLITAG------------------------------NTKVICNASVEDRVPPF 50 (245)
T ss_dssp CCTTSCCTTCCCCEEEECC-----CCCEEEEET------------------------------TEEEEEEEEEESCCCGG
T ss_pred CCCCCCCCCCcCCeEEEeCCCCCCCEEEEEEEC------------------------------CeEEEEEEEeccccCCc
Confidence 399999999999999999999999999999999 99999999999876543
Q ss_pred CCCCceEE--EEEEEecCC-----------CCCCchHHHHHHHHHHHhhhhhhcCCCCCcEEEEEEEEEecCCCchhHHH
Q 024064 84 NENPEKAS--IEVIWKPRT-----------GQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAI 150 (273)
Q Consensus 84 ~~~~~~~~--l~v~~~p~~-----------g~~~~~~~~l~~~l~~~l~s~i~~~~~p~~~I~i~v~Vl~~dG~ll~a~i 150 (273)
...++++. +++++.|++ |+++.++++++++|+++|+++|+++.+|+|.|+|+++||++|||+++|++
T Consensus 51 ~~~~~~g~l~~~~~~~p~a~~~~~~Re~~~G~~~~~~~eis~li~r~l~~~i~~~~l~~~~i~i~~~VL~~DG~~~~aai 130 (245)
T 1oys_A 51 LRGGGKGWITAEYSMLPQATNQQTIQESSKGKISGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQADGGTRTASI 130 (245)
T ss_dssp GTTSCCCEEEEEEEC-------------------CHHHHHHHHHHHHHHHTBCHHHHCSCEEEEEEEEEECSSCHHHHHH
T ss_pred cCCCCceEEEEEEEeCCCcCcccccccccCCCCchHHHHHHHHHHHHHHHhcCHhHCCCEEEEEEEEEEeCCCCHHHHHH
Confidence 34456555 455666753 45677899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCC-----------CCcccceeEEEEEEeeCCeEE-eCCCHHHHhhccccEEEEecCCcccccCCCCccccC
Q 024064 151 NAACAALVDAG-----------IPMKHLAVAICCCSAESGYCI-LDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQG 218 (273)
Q Consensus 151 nAa~lAL~dag-----------Ip~~~~~~avsv~~~~~~~~i-lDPt~~Ee~~~~~~~~va~~~~~~~~~~~~~~~~~~ 218 (273)
+|+++||+|+| |||+++|+++++|++ ++.++ +||+.+|+..+++.++++++.
T Consensus 131 ~aa~~AL~~a~~~~~~~~~~~~ipl~~~v~avs~g~~-~g~~vl~Dp~~~Ee~~~~~~~~v~~~~--------------- 194 (245)
T 1oys_A 131 TGAFLAMAIAIGKLIKAGTIKTNPITDFLAAISVGID-KEQGILLDLNYEEDSSAEVDMNVIMTG--------------- 194 (245)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSSCCBCSCEEEEEEEEE-TTTEEEESCCHHHHHHEEEEEEEEEET---------------
T ss_pred HHHHHHHHhccchhcccCcccccCCCCceeEEEEEEE-CCEEEEecCCHHHHhcCCCcEEEEEcC---------------
Confidence 99999999999 999999999999998 66666 999999999999999999964
Q ss_pred Cccccc-eEEEEec---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 024064 219 EPMEHG-IITSVTH---GAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLP 266 (273)
Q Consensus 219 ~~~~~~-~v~~~~~---G~~~~~~~~~~l~~A~~~~~~i~~~i~~~l~~~~~ 266 (273)
++ ++.++.. +.++.+++.+|++.|.+++++++++++++|+++..
T Consensus 195 ----~g~i~~iq~~g~~~~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~~ 242 (245)
T 1oys_A 195 ----SGRFVELQGTGEEATFSREDLNGLLGLAEKGIQELIDKQKEVLGDSLP 242 (245)
T ss_dssp ----TSCEEEEEEEESSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred ----CCcEEEEEEeCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 23 4444443 48999999999999999999999999999988754
No 14
>1udn_A Ribonuclease PH, RNAse PH; transferase, riken structural genomics/proteomics initiative structural genomics; 2.30A {Aquifex aeolicus} SCOP: d.14.1.4 d.101.1.1 PDB: 1udq_A 1uds_A 1udo_A
Probab=100.00 E-value=6.7e-43 Score=313.39 Aligned_cols=211 Identities=23% Similarity=0.259 Sum_probs=186.1
Q ss_pred CCCCCCCCCCCcccEEEeCCCCCCCceEEEEeCcccccccccccccceeeccccccccccCCCCcEEEEEEEcccCCCCC
Q 024064 4 DRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLAAVYGPKAGTKK 83 (273)
Q Consensus 4 ~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~T~Vl~~V~gp~~~~~~ 83 (273)
+|+|||+++|+|++.+++|++++++|||+|++| +|+|+|+|++|...+..
T Consensus 1 ~R~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G------------------------------~T~Vl~~V~~~~~~p~~ 50 (255)
T 1udn_A 1 MRSDGRKEDQLRPVSIQRDFLEYPEGSCLISFG------------------------------KTKVICTASVIENVPNW 50 (255)
T ss_dssp -CTTSCCTTCCCCEEEEECCSSSSSEEEEEEET------------------------------TEEEEEEEEEESCCCGG
T ss_pred CCCCCCCCCCccCeEEEECCCCCCCEEEEEEEC------------------------------CEEEEEEEEcCCcCCCC
Confidence 499999999999999999999999999999999 99999999999865433
Q ss_pred CCCCceE--EEEEEEecCC-----------CCCCchHHHHHHHHHHHhhhhhhcCCCCCcEEEEEEEEEecCCCchhHHH
Q 024064 84 NENPEKA--SIEVIWKPRT-----------GQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAI 150 (273)
Q Consensus 84 ~~~~~~~--~l~v~~~p~~-----------g~~~~~~~~l~~~l~~~l~s~i~~~~~p~~~I~i~v~Vl~~dG~ll~a~i 150 (273)
...++++ .+++.+.|++ |+++.++++++++|+++|+++|+++.+|+|.|+|+++||++|||+++||+
T Consensus 51 ~~~~~~g~l~~~~~~~P~a~~~r~~Re~~~G~~~~~~~eisrli~r~lr~~i~~~~l~~~~i~I~~~VL~~DG~~~~aai 130 (255)
T 1udn_A 51 LKGKGQGWITAEYSMLPRATQQRTIRESVQGRIGGRTHEIQRMIGRAMRTAVELTKIGERTIWVDCDVIQADGGTRTAAI 130 (255)
T ss_dssp GTTSSCCEEEEEEEECSCCTTSCCCCSSTTCSCCHHHHHHHHHHHHHHHHHBCGGGGCSCEEEEEEEEEECSSCHHHHHH
T ss_pred CCCCCceEEEEEEEcCCCccccccccccCCCCCCHHHHHHHHHHHHHHHHhcCHHHcCCeEEEEEEEEEeCCCCHHHHHH
Confidence 3345654 4566666743 45677889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCC-----------CCcccceeEEEEEEeeCCeEEeCCCHHHHhhccccEEEEecCCcccccCCCCccccCC
Q 024064 151 NAACAALVDAG-----------IPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGE 219 (273)
Q Consensus 151 nAa~lAL~dag-----------Ip~~~~~~avsv~~~~~~~~ilDPt~~Ee~~~~~~~~va~~~~~~~~~~~~~~~~~~~ 219 (273)
+|+++||+||| |||+++|+++++|++ ++.+++||+.+|+..+++.++++++..
T Consensus 131 ~aa~~AL~da~~~~~~~~~~~~ipl~~~v~avsvg~~-~g~~llDpt~~Ee~~~~~~l~va~~~~--------------- 194 (255)
T 1udn_A 131 TGAFVAVADAIIKLHKEGIIEETPIKDFVAAVSVGIV-NDRILLDLNFEEDSAAQVDMNVVGTGS--------------- 194 (255)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSSCCBCCCEEEEEEEEE-TTEEEESCCHHHHHTCSEEEEEEEETT---------------
T ss_pred HHHHHHHHhhcchhcccCcccCCCccCceeEEEEEEE-CCEEEECCCHHHHhhCCCCEEEEEeCC---------------
Confidence 99999999999 999999999999997 899999999999999999999999642
Q ss_pred ccccceEEEEec---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024064 220 PMEHGIITSVTH---GAMSVDDYFHCLERGRAASAKLSDFLRRSLQS 263 (273)
Q Consensus 220 ~~~~~~v~~~~~---G~~~~~~~~~~l~~A~~~~~~i~~~i~~~l~~ 263 (273)
..++.++.. +.++++++.+|++.|.+++++|+++|+++|++
T Consensus 195 ---g~i~~~q~~g~~~~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~ 238 (255)
T 1udn_A 195 ---GRLSEVHTMGEEYSFTKDELIKMLDLAQKGINELIELQKKLYVI 238 (255)
T ss_dssp ---SCEEEEEEEESSCCCCHHHHHHHHHHHHHHHHHHHHHHHTTEEE
T ss_pred ---CCEEEEEEeCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 123444432 48999999999999999999999999999986
No 15
>2po1_B Probable exosome complex exonuclease 2; RNAse PH, hydrolase/hydrolase/RNA complex; 1.94A {Pyrococcus abyssi} PDB: 2po0_B* 2pnz_B 2po2_B*
Probab=100.00 E-value=1.5e-41 Score=307.84 Aligned_cols=213 Identities=21% Similarity=0.303 Sum_probs=185.2
Q ss_pred CCCCCCCCCCCCCcccEEEeCCCCCCCceEEEEeCcccccccccccccceeeccccccccccCCCCcEEEEEEE-cccCC
Q 024064 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLAAVY-GPKAG 80 (273)
Q Consensus 2 ~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~T~Vl~~V~-gp~~~ 80 (273)
+++|+|||+++|+|++.+++|++++++|||+|++| +|+|+|+|+ +|.++
T Consensus 24 ~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G------------------------------~T~Vl~~V~~~~~~p 73 (277)
T 2po1_B 24 EGKRIDDRGFEDYRPIEIEVGVIEKAEGSALVKLG------------------------------STQVLVGIKTSLGEP 73 (277)
T ss_dssp TTCCTTSCCTTCCCCEEEEECCSTTSSEEEEEEET------------------------------TEEEEEEEEEEEECC
T ss_pred cCCCCCCCCCCCcCCeEEEeCCcCCCCeEEEEEEC------------------------------CeEEEEEEEecccCC
Confidence 58999999999999999999999999999999999 999999999 77754
Q ss_pred CCCCCCCceEE--EEEEEecCC------CCCCchHHHHHHHHHHHhhh--hhhcCCC---C---CcEEEEEEEEEecCCC
Q 024064 81 TKKNENPEKAS--IEVIWKPRT------GQIGKPEKEYEIILKRTLQS--ICILTIN---P---NTTTSVIIQVVHDDGA 144 (273)
Q Consensus 81 ~~~~~~~~~~~--l~v~~~p~~------g~~~~~~~~l~~~l~~~l~s--~i~~~~~---p---~~~I~i~v~Vl~~dG~ 144 (273)
+.+.|+++. ++|++.|++ |++++++.+++++|+++|++ +|+++.+ | .|.|+|+++||++|||
T Consensus 74 --~~~~~~~g~l~~~~~~~p~a~~~~~~g~~~~~~~~l~~li~r~l~~s~~idl~~L~i~pg~~~w~i~id~~VL~~dG~ 151 (277)
T 2po1_B 74 --FPDTPNMGVMTTNVELVPLASPTFEPGPPDERAIELARVIDRGIRESKALNLEKMVIVPGKIVRVVFIDVHVLDHDGN 151 (277)
T ss_dssp --CTTCTTSCEEEEEEEECGGGCTTCCSSSCCHHHHHHHHHHHHHHHTTTSBCGGGGEEETTTEEEEEEEEEEEEECSSC
T ss_pred --CCCCCCceEEEEEEEeCCCccccccCCCCChHHHHHHHHHHHHHhhcccccHHHccccCCcEEEEEEEEEEEECCCCC
Confidence 345566655 566667764 45677899999999999998 5666654 3 4899999999999999
Q ss_pred chhHHHHHHHHHHHhCC---------------------CCcccceeEEEEEEeeCCeEEeCCCHHHHhhccccEEEEecC
Q 024064 145 LLPCAINAACAALVDAG---------------------IPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPN 203 (273)
Q Consensus 145 ll~a~inAa~lAL~dag---------------------Ip~~~~~~avsv~~~~~~~~ilDPt~~Ee~~~~~~~~va~~~ 203 (273)
+++|+++|+++||+|+| +||+++|+++|+|++ ++.+++||+.+||..+++.++++++.
T Consensus 152 ~~~a~i~aa~~AL~da~~p~~~~~~~~~~~~~~~~~~~ipl~~~~~avs~g~~-~~~~l~Dp~~~Ee~~~~~~~~v~~~~ 230 (277)
T 2po1_B 152 LMDAIGIAAIAALLNARVPKVRYNEETGEVETLDETEPLPVEKIPVPVTFAKI-GNILVVDPSLDEELVMDGKITITTDE 230 (277)
T ss_dssp HHHHHHHHHHHHHHHCEEEEEEECTTTCCEEEEEEEEECCBCCCCEEEEEEEE-TTEEEESCCHHHHHHCSEEEEEEECT
T ss_pred HHHHHHHHHHHHHHhcCCCcEEEeCCCceeecccccccccccCceEEEEEEEE-CCEEEeCCCHHHHhhCCCcEEEEEcC
Confidence 99999999999999999 899999999999998 78999999999999999999999964
Q ss_pred CcccccCCCCccccCCccccceEEEEec--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 024064 204 SILSVLPEGSSLVQGEPMEHGIITSVTH--GAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKL 265 (273)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~--G~~~~~~~~~~l~~A~~~~~~i~~~i~~~l~~~~ 265 (273)
. .+++.++.. |.++.+++.+|++.|.+++++++++++++|++..
T Consensus 231 ~------------------g~i~~lq~~g~~~~~~~~l~~~l~~A~~~~~~l~~~~~~~l~~~~ 276 (277)
T 2po1_B 231 T------------------GHISAVQKSEGGAFKLEEVMYAVETAFKKAEEIRKLILEAVEKAK 276 (277)
T ss_dssp T------------------SCEEEEEEESSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred C------------------CCEEEEEccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 2 124444444 5899999999999999999999999999998753
No 16
>3krn_A Protein C14A4.5, confirmed by transcript evidence; RNAse PH domain, homodimer, exosome, cell-death-related DNAS hydrolase; 3.92A {Caenorhabditis elegans}
Probab=100.00 E-value=1.8e-45 Score=324.01 Aligned_cols=210 Identities=25% Similarity=0.382 Sum_probs=168.0
Q ss_pred CCCCcccEEEeCCCCCCCceEEEEeCcccccccccccccceeeccccccccccCCCCcEEEEEEEcccCCCCCCCCCceE
Q 024064 11 PNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLAAVYGPKAGTKKNENPEKA 90 (273)
Q Consensus 11 ~~e~R~i~i~~~~l~~a~GSa~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~T~Vl~~V~gp~~~~~~~~~~~~~ 90 (273)
.+|+|++.+++|++++++|||+|++| +|+|+|+|+||++++++.+.++++
T Consensus 2 ~~e~R~i~ie~g~l~~A~GSa~v~~G------------------------------~T~Vl~~V~~~~e~~~~~~~~~~~ 51 (222)
T 3krn_A 2 AGRLREMRCELSFLKNADGSACFSQG------------------------------ATCIWASCSGPGDVHASKASDEAM 51 (222)
T ss_dssp -CCCCCBCCBSCCC----CCCBCCBT------------------------------TCEEECCCCSSCC-----------
T ss_pred CCcccceEEEECCCCCCCeEEEEEEC------------------------------CcEEEEEEECCCCCcccccCCceE
Confidence 47999999999999999999999999 999999999999877666788999
Q ss_pred EEEEEEecCCCCCCchHHHHHHHHHHHhhhhhhcCCCCCcEEEEEEEEEecCCCchhHHHHHHHHHHHhCCCCcccceeE
Q 024064 91 SIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVA 170 (273)
Q Consensus 91 ~l~v~~~p~~g~~~~~~~~l~~~l~~~l~s~i~~~~~p~~~I~i~v~Vl~~dG~ll~a~inAa~lAL~dagIp~~~~~~a 170 (273)
.++|+|+|+.|+++++ +++++|+|+|++++.++.||+|.|+|+++||++||++++|++||+++||+|+||||+++++|
T Consensus 52 ~l~v~~~p~~G~~~~~--e~~~li~r~l~~~i~~~~~p~~~I~I~~~VL~~DG~~~~aai~aa~~AL~dagiP~~~~v~a 129 (222)
T 3krn_A 52 TLDISYRANCGDNKFN--VLNNIIHSTLSNAINLELFPHTTISVTVHGIQDDGSMGAVAINGACFALLDNGMPFETVFCG 129 (222)
T ss_dssp --CCCSSCCCC--CCS--SCTTHHHHC--CCSCC-----CCCCCCCEEEECCSCHHHHHHHGGGTTTTTTTCCTTSCCCC
T ss_pred EEEEEEcCCCCCCCHH--HHHHHHHHHHHHhccHHhCCCcEEEEEEEEEECCCChHHHHHHHHHHHHHHCCCCccCcEEE
Confidence 9999999999987666 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeeCCeEEeCCCHHHHhhccccEEEEe---cCCcccccCCCCccccCCccccceEEEEecCCCCHHHHHHHHHHHH
Q 024064 171 ICCCSAESGYCILDPTKLEEQKMKGFAYLVF---PNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGR 247 (273)
Q Consensus 171 vsv~~~~~~~~ilDPt~~Ee~~~~~~~~va~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~G~~~~~~~~~~l~~A~ 247 (273)
+++|+. ++.+++||+.+|+..+++.+++++ +.+ ..+++.++..|.++++++.++++.|.
T Consensus 130 vsvg~~-~g~~llDpt~~Ee~~~~~~l~va~~~~~~~-----------------~~~i~~vq~~g~~~~~~l~~~l~~a~ 191 (222)
T 3krn_A 130 VLIVRV-KDELIIDPTAKQEAASTGRVLFSVCKGSDG-----------------HPEVCAMDAIGHWDFIQLEAAWSLAQ 191 (222)
T ss_dssp CCCEEC-SSSEESSCCTTTTTSCC-CCCCEECCCSSS-----------------SCCEEEECCBSSCTTHHHHTHHHHTT
T ss_pred EEEEEE-CCEEEeCCCHHHHhccCccEEEEEEccCCC-----------------CCCEEEEEEeCCcCHHHHHHHHHHHH
Confidence 999985 889999999999999999999998 421 23455556778999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhccCcCC
Q 024064 248 AASAKLSDFLRRSLQSKLPGDLS 270 (273)
Q Consensus 248 ~~~~~i~~~i~~~l~~~~~~~~~ 270 (273)
++++++.++++++++++..++|.
T Consensus 192 ~~~~~i~~~~~~~l~~~~~~~~~ 214 (222)
T 3krn_A 192 PSASAIFDFYKTVMKRKLSVDEQ 214 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHhcchhh
Confidence 99999999999999999988874
No 17
>2wnr_A Probable exosome complex exonuclease 2; phosphate binding, 3'-5' exoribonuclease, hydrolase; 2.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=5.7e-41 Score=302.96 Aligned_cols=210 Identities=20% Similarity=0.306 Sum_probs=182.4
Q ss_pred CCCCCCCCCCCCCcccEEEeCCCCCCCceEEEEeCcccccccccccccceeeccccccccccCCCCcEEEEEEE-cccCC
Q 024064 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLAAVY-GPKAG 80 (273)
Q Consensus 2 ~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~T~Vl~~V~-gp~~~ 80 (273)
+++|+|||+++|+|++.+++|++++++|||++++| +|+|+|+|+ +|.++
T Consensus 22 ~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G------------------------------~T~Vl~~V~~~~~~p 71 (271)
T 2wnr_A 22 NKERIDGRSLHEFRDISIETGVISKAEGSSRVKLG------------------------------NTQIIVGVKPQIGEP 71 (271)
T ss_dssp TTCCTTCCCTTCCCCEEEEESCSTTSSEEEEEEET------------------------------TEEEEEEEEEEEECC
T ss_pred cCCCCCCCCcccccCeEEEeCccCCCCeEEEEEEC------------------------------CeEEEEEEEeeeecC
Confidence 57999999999999999999999999999999999 999999999 66654
Q ss_pred CCCCCCCceEEE--EEEEecCC------CCCCchHHHHHHHHHHHhhh--hhhcCCC---C---CcEEEEEEEEEecCCC
Q 024064 81 TKKNENPEKASI--EVIWKPRT------GQIGKPEKEYEIILKRTLQS--ICILTIN---P---NTTTSVIIQVVHDDGA 144 (273)
Q Consensus 81 ~~~~~~~~~~~l--~v~~~p~~------g~~~~~~~~l~~~l~~~l~s--~i~~~~~---p---~~~I~i~v~Vl~~dG~ 144 (273)
+.+.++++.+ +|++.|++ |++++++.+++++|+|+|++ ++.++.+ | +|.|+|+++||++|||
T Consensus 72 --~~~~~~~g~l~v~~~~~p~a~~~~~~g~~~~~~~~~s~li~r~lr~s~~i~l~~l~i~pg~~~~~i~i~~~VL~~DG~ 149 (271)
T 2wnr_A 72 --FPDTPEMGVILTNSELLPMASPTFEPGPPDERSVELSRVVDRCIRESRMIDLEKLCIIEGSKVWMLFLDLHIIDYDGN 149 (271)
T ss_dssp --CTTCTTCCEEEEEEEECGGGCTTCCCSSCCHHHHHHHHHHHHHHHHTTCBCGGGGEEETTTEEEEEEEEEEEEECSSC
T ss_pred --CCCCCCceEEEEEEEeCCcccccccCCCCchHHHHHHHHHHHHHhccCCccHHHccccCCcEEEEEEEEEEEECCCCC
Confidence 3345676655 55556753 55677899999999999999 5776665 3 5899999999999999
Q ss_pred chhHHHHHHHHHHHhCC--------------------CCcccceeEEEEEEeeCCeEEeCCCHHHHhhccccEEEEecCC
Q 024064 145 LLPCAINAACAALVDAG--------------------IPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNS 204 (273)
Q Consensus 145 ll~a~inAa~lAL~dag--------------------Ip~~~~~~avsv~~~~~~~~ilDPt~~Ee~~~~~~~~va~~~~ 204 (273)
+++|+++|+++||.|+| |||+++|+++++|++ ++.+++||+.+|+..+++.++++++..
T Consensus 150 ~~~aai~aa~~AL~~a~~p~~~~~~~~~~~~~~~~~~ip~~~~~~avt~g~~-~~~~l~Dpt~~Ee~~~~~~l~va~~~~ 228 (271)
T 2wnr_A 150 LFDAAVLATVAALLDTRIPAAEVEDGEVVINREKMQPLPVNRKALMCTFAKI-GNEIVLDPSLEEEDILTARISIGVTEE 228 (271)
T ss_dssp HHHHHHHHHHHHHHHCEEEEEEEETTEEEEEEEEEEECCBCCCEEEEEEEEE-TTEEEESCCHHHHTTCSEEEEEEEETT
T ss_pred HHHHHHHHHHHHHHhcCCCeEEecCCceeeccCcccccCccCCeEEEEEEEE-CCEEEeCCCHHHHhcCCCcEEEEEeCC
Confidence 99999999999999999 999999999999997 889999999999999999999999632
Q ss_pred cccccCCCCccccCCccccceEEEEec--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024064 205 ILSVLPEGSSLVQGEPMEHGIITSVTH--GAMSVDDYFHCLERGRAASAKLSDFLRRSLQ 262 (273)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~v~~~~~--G~~~~~~~~~~l~~A~~~~~~i~~~i~~~l~ 262 (273)
.+++.++.. |.++++++.+|++.|.++++++.++++++++
T Consensus 229 ------------------~~i~~i~~~g~~~~~~~~l~~~l~~a~~~~~~i~~~~~~~l~ 270 (271)
T 2wnr_A 229 ------------------GSICAMQKGGEGPLTRDDVLKAVSIAVEKVPQLIEYLDKSMT 270 (271)
T ss_dssp ------------------SCEEEEEEESSSCBCHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ------------------CCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 224444444 5899999999999999999999999999874
No 18
>2je6_A RRP42, exosome complex exonuclease 2; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: d.14.1.4 d.101.1.1 PDB: 2jea_A* 2jeb_A* 2br2_A 2c37_A* 2c38_A* 2c39_A* 3l7z_A
Probab=100.00 E-value=5.8e-41 Score=303.81 Aligned_cols=210 Identities=25% Similarity=0.306 Sum_probs=182.9
Q ss_pred CCCCCCCCCCCCCcccEEEeCCCCCCCceEEEEeCcccccccccccccceeeccccccccccCCCCcEEEEEEE-cccCC
Q 024064 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLAAVY-GPKAG 80 (273)
Q Consensus 2 ~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~T~Vl~~V~-gp~~~ 80 (273)
+++|+|||+++|+|++.+++|++++++|||++++| +|+|+|+|+ +|.++
T Consensus 27 ~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G------------------------------~T~Vl~~V~~~~~~p 76 (277)
T 2je6_A 27 KGIRQDGRKLTDYRPLSITLDYAKKADGSALVKLG------------------------------TTMVLAGTKLEIDKP 76 (277)
T ss_dssp GTBCTTSCBTTCCCCEEEEETCSTTSSEEEEEEET------------------------------TEEEEEEEEEEEECC
T ss_pred cCCCCCCCCcCcccCeEEEeCCcCCCCeEEEEEEC------------------------------CeEEEEEEEeeeeCC
Confidence 57999999999999999999999999999999999 999999999 55543
Q ss_pred CCCCCCCceEEE--EEEEecCC------CCCCchHHHHHHHHHHHhhh--hhhcCCC------CCcEEEEEEEEEecCCC
Q 024064 81 TKKNENPEKASI--EVIWKPRT------GQIGKPEKEYEIILKRTLQS--ICILTIN------PNTTTSVIIQVVHDDGA 144 (273)
Q Consensus 81 ~~~~~~~~~~~l--~v~~~p~~------g~~~~~~~~l~~~l~~~l~s--~i~~~~~------p~~~I~i~v~Vl~~dG~ 144 (273)
+.+.|+++.+ +|++.|++ |++++++.+++++|+|+|++ ++.++.| ++|.|+|+++||++|||
T Consensus 77 --~~~~~~~g~l~v~~~~~p~a~~~~~~g~~~~~~~~is~li~r~lr~~~~i~~~~l~i~~g~~~~~i~i~~~VL~~DG~ 154 (277)
T 2je6_A 77 --YEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVWLDVYVLDYGGN 154 (277)
T ss_dssp --CTTCTTCCEEEEEEEECTTSCTTCCCSSCCHHHHHHHHHHHHHHHHTTCSCGGGGEEETTTEEEEEEEEEEEEECCSC
T ss_pred --CCCCCCccEEEEEEEeCCccCcccccCCCChHHHHHHHHHHHHHhccCCcCHHHceeecCceEEEEEEEEEEECCCCC
Confidence 3445676655 55556754 45677889999999999999 4677766 57999999999999999
Q ss_pred chhHHHHHHHHHHHhCC---------------------CCcccceeEEEEEEeeCCeEEeCCCHHHHhhccccEEEEecC
Q 024064 145 LLPCAINAACAALVDAG---------------------IPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPN 203 (273)
Q Consensus 145 ll~a~inAa~lAL~dag---------------------Ip~~~~~~avsv~~~~~~~~ilDPt~~Ee~~~~~~~~va~~~ 203 (273)
+++|+++|+++||.+++ |||+++|+++++|++ ++.+++||+.+|+..+++.++++++.
T Consensus 155 ~~~aai~aa~~AL~~a~~p~v~~~~~~~~~~~~~~~~~ip~~~~~~avsvg~~-~~~~l~Dpt~~Ee~~~~~~l~va~~~ 233 (277)
T 2je6_A 155 VLDACTLASVAALYNTKVYKVEQHSNGISVNKNEVVGKLPLNYPVVTISVAKV-DKYLVVDPDLDEESIMDAKISFSYTP 233 (277)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEECC---CEEEEEEEEEECCCSCCCEEEEEEEE-TTEEEESCCHHHHHHCSEEEEEEECT
T ss_pred HHHHHHHHHHHHHHhcCCCeEEecCCcceEeccCccccccccCCeEEEEEEEE-CCEEecCCCHHHHhcCCCcEEEEEeC
Confidence 99999999999999999 999999999999997 88999999999999999999999863
Q ss_pred CcccccCCCCccccCCccccceEEEEec--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024064 204 SILSVLPEGSSLVQGEPMEHGIITSVTH--GAMSVDDYFHCLERGRAASAKLSDFLRRSLQ 262 (273)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~--G~~~~~~~~~~l~~A~~~~~~i~~~i~~~l~ 262 (273)
. .+++.++.. |.++++++.+|++.|.+++++++++++++++
T Consensus 234 ~------------------g~i~~v~~~g~~~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~ 276 (277)
T 2je6_A 234 D------------------LKIVGIQKSGKGSMSLQDIDQAENTARSTAVKLLEELKKHLG 276 (277)
T ss_dssp T------------------CCEEEEEEESSSCEEHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred C------------------CCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1 224444544 5899999999999999999999999999874
No 19
>3m7n_G Probable exosome complex exonuclease 2; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_H 2ba0_I 3m85_G
Probab=100.00 E-value=1.1e-40 Score=299.61 Aligned_cols=208 Identities=20% Similarity=0.277 Sum_probs=179.2
Q ss_pred CCCCCCCCCCCCCcccEEEeCCCCCCCceEEEEeCcccccccccccccceeeccccccccccCCCCcEEEEEEEcccCCC
Q 024064 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLAAVYGPKAGT 81 (273)
Q Consensus 2 ~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~T~Vl~~V~gp~~~~ 81 (273)
+++|+|||+++|+|++.+++|++++++|||++++| +|+|+|+|+++...+
T Consensus 20 ~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G------------------------------~T~Vl~~V~~~~~~p 69 (259)
T 3m7n_G 20 DNERIDGRGFDEFRKVEIIPNVIEKAEGSALVKLG------------------------------DTQVVVGVKMQPGEP 69 (259)
T ss_dssp TTCCTTCCCTTCCCCEEEEETSSTTSSEEEEEEET------------------------------TEEEEEEEEEEEECC
T ss_pred cCCCCCCCCCccccCeEEEeCCcCCCCceEEEEEC------------------------------CcEEEEEEEecccCC
Confidence 68999999999999999999999999999999999 999999999654322
Q ss_pred CCCCCCceEE--EEEEEecCC------CCCCchHHHHHHHHHHHhhh--hhhcCCC---CC---cEEEEEEEEEecCCCc
Q 024064 82 KKNENPEKAS--IEVIWKPRT------GQIGKPEKEYEIILKRTLQS--ICILTIN---PN---TTTSVIIQVVHDDGAL 145 (273)
Q Consensus 82 ~~~~~~~~~~--l~v~~~p~~------g~~~~~~~~l~~~l~~~l~s--~i~~~~~---p~---~~I~i~v~Vl~~dG~l 145 (273)
+.+.|+++. ++|++.|++ |++++++.+++++|+|+|++ ++.++.+ |+ |.|+|+++||++|||+
T Consensus 70 -~~~~~~~g~l~v~~~~~p~a~~~~~~g~~~~~~~~~srli~r~lr~s~~i~l~~L~i~pg~~~~~i~i~~~VL~~DG~~ 148 (259)
T 3m7n_G 70 -YPDTPDRGVIIVNAELVPLASPTFEPGPPDENSIELARVVDRGIRESEAVDLSKLVIEEGEKVWIVFVDIHALDDDGNL 148 (259)
T ss_dssp -CSSCTTSCEEEEEEECCTTSCTTCCSSSSCHHHHHHHHHHHHHHHHTTCBCGGGGEEETTTEEEEEEEEEEEEECSSCH
T ss_pred -CCCCCCceEEEEEEEeCCcccccccCCCCChHHHHHHHHHHHHHhhcCCccHHHhcccCCcEEEEEEEEEEEEcCCCCH
Confidence 334565554 556667863 56778899999999999999 7777765 63 9999999999999999
Q ss_pred hhHHHHHHHHHHHhCCC-------------CcccceeEEEEEEeeCCeEEeCCCHHHHhhccccEEEEecCCcccccCCC
Q 024064 146 LPCAINAACAALVDAGI-------------PMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEG 212 (273)
Q Consensus 146 l~a~inAa~lAL~dagI-------------p~~~~~~avsv~~~~~~~~ilDPt~~Ee~~~~~~~~va~~~~~~~~~~~~ 212 (273)
++||++|+++||.+++| ||+++|+++++|++ ++.+++||+.+|+..+++.++++++..
T Consensus 149 ~~aai~aa~~AL~~a~iP~~~~~~~~~~~lp~~~~~~avtvg~~-~~~~l~Dpt~~Ee~~~~~~l~va~~~~-------- 219 (259)
T 3m7n_G 149 LDASALAAIAALMNTKVPAERFDLGEDYLLPVRDLPVSVTSLIV-GNKYLVDPSREEMSVGDTTLTITTDKD-------- 219 (259)
T ss_dssp HHHHHHHHHHHHHTCEECTGGGTSSSCEECCBCCCCEEEEEEEE-TTEEEESCCTTGGGGCSCEEEEEECTT--------
T ss_pred HHHHHHHHHHHHHhCCCCeEEecCCceecccccCceeEEEEEEE-CCEEEECCCHHHHhhCCCcEEEEEeCC--------
Confidence 99999999999999999 79999999999987 889999999999999999999999732
Q ss_pred CccccCCccccceEEEEec--CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 024064 213 SSLVQGEPMEHGIITSVTH--GAMSVDDYFHCLERGRAASAKLSDFLRR 259 (273)
Q Consensus 213 ~~~~~~~~~~~~~v~~~~~--G~~~~~~~~~~l~~A~~~~~~i~~~i~~ 259 (273)
.+++.++.. +.++++++.+|++.|.++++++.++|++
T Consensus 220 ----------g~i~~i~~~g~~~~~~~~l~~~l~~a~~~~~~l~~~~~~ 258 (259)
T 3m7n_G 220 ----------DNVVAMQKSGGYLLDEKLFDELLDVSINCARKLREKFKE 258 (259)
T ss_dssp ----------SCEEEEEEESSCCBCHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred ----------CcEEEEECCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 234444443 5899999999999999999999998764
No 20
>2nn6_C Exosome complex exonuclease RRP43; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=8.6e-41 Score=302.73 Aligned_cols=214 Identities=20% Similarity=0.242 Sum_probs=184.6
Q ss_pred CCCCCCCCCCCCCcccEEEeCCCCCCCceEEEEeCcccccccccccccceeeccccccccccCCCCcEEEEEEEcccCCC
Q 024064 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLAAVYGPKAGT 81 (273)
Q Consensus 2 ~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~T~Vl~~V~gp~~~~ 81 (273)
+++|+|||+++|+|++.+++|++++++|||++++| +|+|+|+|++|...+
T Consensus 22 ~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G------------------------------~T~Vl~~V~~~~~~p 71 (278)
T 2nn6_C 22 ENCRPDGRELGEFRTTTVNIGSISTADGSALVKLG------------------------------NTTVICGVKAEFAAP 71 (278)
T ss_dssp TSCCTTSCCSCCCCSCCEEETCCSSSSEEEEEEET------------------------------TEEEEEEEEEEECCC
T ss_pred cCCCCCCCCcccccCeEEEeCCccCCCceEEEEeC------------------------------CeEEEEEEEEEeecC
Confidence 57899999999999999999999999999999999 999999999988643
Q ss_pred CCCCCCceEE--EEEEEecCC------CCCCchHHHHHHHHHHHhhh--hhhcC------CCCCcEEEEEEEEEecCCCc
Q 024064 82 KKNENPEKAS--IEVIWKPRT------GQIGKPEKEYEIILKRTLQS--ICILT------INPNTTTSVIIQVVHDDGAL 145 (273)
Q Consensus 82 ~~~~~~~~~~--l~v~~~p~~------g~~~~~~~~l~~~l~~~l~s--~i~~~------~~p~~~I~i~v~Vl~~dG~l 145 (273)
+...++++. ++|++.|++ |++++++.+++++|+|+|++ ++.++ ..++|.|+|+++||++|||+
T Consensus 72 -~~~~~~~g~l~v~~~~~p~a~~~~~~g~~~~~~~~~s~li~r~l~~s~~i~l~~L~i~pg~~~~~i~i~~~VL~~DG~~ 150 (278)
T 2nn6_C 72 -STDAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLVWVLYCDLICLDYDGNI 150 (278)
T ss_dssp -CSSSTTCCCCEEEEECCSSSCTTSCSSSCCHHHHHHHHHHHHHHHHHCCSCHHHHCSSBTTBCEEEEEEEEESSCCSCT
T ss_pred -CCCCCCccEEEEEEEeCCccCccccCCCCcHHHHHHHHHHHHHHhccCCCCHHHCEEeCCcEEEEEEEEEEEECCCCCH
Confidence 344566655 556666753 56677899999999999995 55544 34689999999999999999
Q ss_pred hhHHHHHHHHHHHhCCC----------------------CcccceeEEEEEEeeCC-eEEeCCCHHHHhhccccEEEEec
Q 024064 146 LPCAINAACAALVDAGI----------------------PMKHLAVAICCCSAESG-YCILDPTKLEEQKMKGFAYLVFP 202 (273)
Q Consensus 146 l~a~inAa~lAL~dagI----------------------p~~~~~~avsv~~~~~~-~~ilDPt~~Ee~~~~~~~~va~~ 202 (273)
++|+++|+++||+++|| ||+++|+++++|++ ++ .+++||+.+|+..+++.++++++
T Consensus 151 ~~aai~aa~~AL~~a~iP~v~~~~~~~~~~~~~~~~~~lp~~~~~~avs~g~~-~~~~~l~Dpt~~Ee~~~~~~l~va~~ 229 (278)
T 2nn6_C 151 LDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSYLNIRTHPVATSFAVF-DDTLLIVDPTGEEEHLATGTLTIVMD 229 (278)
T ss_dssp THHHHHHHHHHHHTCCCCCCCBCSSSBCCCTTSCCCSCSCCSCCCEEEEEEEC-TTTCCEESCCTTTTTSCSEEEEEEEC
T ss_pred HHHHHHHHHHHHHhCCCCeEEEeCCCcceecCcccccccccCCceEEEEEEEE-CCceEEECCCHHHHhhcCceEEEEEc
Confidence 99999999999999997 79999999999998 66 99999999999999999999986
Q ss_pred CCcccccCCCCccccCCccccceEEEEecC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 024064 203 NSILSVLPEGSSLVQGEPMEHGIITSVTHG--AMSVDDYFHCLERGRAASAKLSDFLRRSLQSKL 265 (273)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~G--~~~~~~~~~~l~~A~~~~~~i~~~i~~~l~~~~ 265 (273)
.. ..++.++..| .++++++.+|++.|.++++++++++++++++..
T Consensus 230 ~~------------------g~i~~v~~~g~~~~~~~~l~~~l~~a~~~~~~i~~~~~~~l~~~~ 276 (278)
T 2nn6_C 230 EE------------------GKLCCLHKPGGSGLTGAKLQDCMSRAVTRHKEVKKLMDEVIKSMK 276 (278)
T ss_dssp TT------------------CCEEEEEESCCSCCCHHHHHHHHHHHHHHHHHHHHHHHTTTTTTC
T ss_pred CC------------------CcEEEEEccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 32 1244455555 899999999999999999999999999998754
No 21
>2nn6_A Polymyositis/scleroderma autoantigen 1; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=4.8e-39 Score=301.02 Aligned_cols=212 Identities=20% Similarity=0.296 Sum_probs=182.5
Q ss_pred CCCCCCCCCCCCCcccEEEeCCCCCCCceEEEEeCcccccccccccccceeeccccccccccCCCCcEEEEEEEcccCCC
Q 024064 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLAAVYGPKAGT 81 (273)
Q Consensus 2 ~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~T~Vl~~V~gp~~~~ 81 (273)
+++|+|||+++|+|++.+++| +++|||+|++| +|+|+|+|++|...+
T Consensus 37 ~g~R~DGR~~~e~R~i~ie~g---~A~GSa~v~~G------------------------------~T~VL~tV~~e~~~p 83 (358)
T 2nn6_A 37 EKKRLDGRQTYDYRNIRISFG---TDYGCCIVELG------------------------------KTRVLGQVSCELVSP 83 (358)
T ss_dssp TTCCTTSCCTTCCCCCEEEEC---SSTTEEEEESS------------------------------SCEEEEEECCEEECC
T ss_pred cCCCCCCCCccccCCeEEEEe---cCCcEEEEEEC------------------------------CcEEEEEEEecccCC
Confidence 578999999999999999999 89999999999 999999999998543
Q ss_pred CCCCCCc--eEEEEEEEecCC------CCCCchHHHHHHHHHHHhhhhhhcC--------CCCCcEEEEEEEEEecCCCc
Q 024064 82 KKNENPE--KASIEVIWKPRT------GQIGKPEKEYEIILKRTLQSICILT--------INPNTTTSVIIQVVHDDGAL 145 (273)
Q Consensus 82 ~~~~~~~--~~~l~v~~~p~~------g~~~~~~~~l~~~l~~~l~s~i~~~--------~~p~~~I~i~v~Vl~~dG~l 145 (273)
+.+.|+ .+.++|++.|++ |++++++.+++++|+|+|+++..++ ..|+|.|+|+++||++|||+
T Consensus 84 -~~~~~~~g~l~~~v~~~p~a~~~~~~g~~s~~e~eisrli~r~Lr~s~~idl~~LcI~pg~~~w~I~Vdv~VL~~DGn~ 162 (358)
T 2nn6_A 84 -KLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHDGNI 162 (358)
T ss_dssp -CSTTTTSCCEEEEEEECTTTCSSCCSSSTHHHHTHHHHHHHHHHHHHTCBCSSSSCSBTTTBEEEEEEEEEECSCCSCC
T ss_pred -cccCCCCcEEEEEEEecCCccccccCCCCCHHHHHHHHHHHHHhhhccccchHhhcccCCCccEEEEEEEEEEeCCCCH
Confidence 333454 466778888864 5566778899999999999864433 34889999999999999999
Q ss_pred hhHHHHHHHHHHHhCCCC-----------------------cccceeEEEEEEee-CCeEEeCCCHHHHhhccccEEEEe
Q 024064 146 LPCAINAACAALVDAGIP-----------------------MKHLAVAICCCSAE-SGYCILDPTKLEEQKMKGFAYLVF 201 (273)
Q Consensus 146 l~a~inAa~lAL~dagIp-----------------------~~~~~~avsv~~~~-~~~~ilDPt~~Ee~~~~~~~~va~ 201 (273)
++||++|+++||.++||| |+++|++++||++. ++.+|+||+.+|+..+++.++|++
T Consensus 163 ~dAai~Aa~aAL~da~iP~v~~~~~~v~i~~~~~~~~~~l~i~~~p~avsvgl~~~~~~illDPt~~Ee~~~~~~l~Va~ 242 (358)
T 2nn6_A 163 IDAASIAAIVALCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAM 242 (358)
T ss_dssp HHHHHHHHHHHHHHCCCCCCBCCTTCCBCCHHHHTSCCCCCBCCCEEEEEEEECTTTSSEEESCCHHHHHHCSCEEEEEE
T ss_pred HHHHHHHHHHHHHHhCcCcEEeeCCeeEecccccccccccCccCCEEEEEEEEEeeCCEEEECCCHHHHhhcCccEEEEE
Confidence 999999999999999999 89999999999863 579999999999999999999998
Q ss_pred cCCcccccCCCCccccCCccccc-eEEEEecC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 024064 202 PNSILSVLPEGSSLVQGEPMEHG-IITSVTHG--AMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLP 266 (273)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~G--~~~~~~~~~~l~~A~~~~~~i~~~i~~~l~~~~~ 266 (273)
+. .+ ++.++..| .++.+++.+|++.|.+++++|.++|+++|++...
T Consensus 243 t~-------------------~g~I~~lqk~G~~~ls~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~~ 291 (358)
T 2nn6_A 243 NK-------------------HREICTIQSSGGIMLLKDQVLRCSKIAGVKVAEITELILKALENDQK 291 (358)
T ss_dssp ET-------------------TTEEEEEEEESCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cC-------------------CCeEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 74 33 34444444 5899999999999999999999999999987544
No 22
>2wp8_A Exosome complex component RRP45; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-39 Score=297.00 Aligned_cols=214 Identities=18% Similarity=0.236 Sum_probs=169.5
Q ss_pred CCCCCCCCCCCCCcccEEEeCCCCCCCceEEEEeCcccccccccccccceeeccccccccccCCCCcEEEEEEEcccCCC
Q 024064 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLAAVYGPKAGT 81 (273)
Q Consensus 2 ~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~T~Vl~~V~gp~~~~ 81 (273)
+++|+|||+++|+|++.+++| +++|||+|++| +|+|+|+|++|...+
T Consensus 21 ~~~R~DGR~~~e~R~i~i~~g---~a~GSa~v~~G------------------------------~T~Vl~~V~~~~~~p 67 (305)
T 2wp8_A 21 QNYRLDGRSFDQFRDVEITFG---KEFGDVSVKMG------------------------------NTKVHCRISCQIAQP 67 (305)
T ss_dssp TTCCTTSCCTTCCCCEEEEEC---SSTTEEEEEET------------------------------TEEEEEEEEEEEC-C
T ss_pred hCCCCCCCCCcccCCeEEEEc---CCCcEEEEEEC------------------------------CeEEEEEEeccccCC
Confidence 579999999999999999999 79999999999 999999999987543
Q ss_pred CCCCCCc--eEEEEEEEecCC------CCCC-chHHHHHHHHHHHhh--hhhhcCCC---C---CcEEEEEEEEEecCCC
Q 024064 82 KKNENPE--KASIEVIWKPRT------GQIG-KPEKEYEIILKRTLQ--SICILTIN---P---NTTTSVIIQVVHDDGA 144 (273)
Q Consensus 82 ~~~~~~~--~~~l~v~~~p~~------g~~~-~~~~~l~~~l~~~l~--s~i~~~~~---p---~~~I~i~v~Vl~~dG~ 144 (273)
+.+.|+ .+.++|+|.|++ |+++ +++.+++++|+++|+ .+|.++.+ | .|.|+|+++||++|||
T Consensus 68 -~~~~~~~g~~~~~ve~~~~~~~~~~~g~~~~~~~~~is~li~r~l~~s~~idl~~L~i~pg~~~w~I~id~~VL~~DG~ 146 (305)
T 2wp8_A 68 -YEDRPFEGLFVISTEISPMAGSQFENGNITGEDEVLCSRIIEKSVRRSGALDVEGLCIVAGSKCWAVRADVHFLDCDGG 146 (305)
T ss_dssp -CSSCTTCCEEEEEECCC----------------------CHHHHHHHTTSBCGGGGEEETTTEEEEEEEEEEEEECSSC
T ss_pred -cccCCCCcEEEEEEEECCCCCccccCCCCChhHHHHHHHHHHHHHhhccCcCHHHccccCCcEEEEEEEEEEEEcCCCC
Confidence 233444 466778887753 5666 788999999999999 45665533 3 4899999999999999
Q ss_pred chhHHHHHHHHHHHhCCCC-----------------------cccceeEEEEEEee---------C----CeEEeCCCHH
Q 024064 145 LLPCAINAACAALVDAGIP-----------------------MKHLAVAICCCSAE---------S----GYCILDPTKL 188 (273)
Q Consensus 145 ll~a~inAa~lAL~dagIp-----------------------~~~~~~avsv~~~~---------~----~~~ilDPt~~ 188 (273)
+++||++|+++||+|+||| |+++|+++++|++. + +.+|+||+.+
T Consensus 147 ~~dAai~aa~~AL~~a~iP~~~~~~~~~~i~~~~~~~~~~l~~~~~pvavs~g~i~~~~~~~~~~~~~~~~~~l~Dpt~~ 226 (305)
T 2wp8_A 147 FIDASCIAVMAGLMHFKKPDITVHGEQIIVHPVNEREPVPLGILHIPICVTFSFFNPQDTEENIKGETNSEISIIDATLK 226 (305)
T ss_dssp HHHHHHHHHHHHHHHCEECCCBCTTSSCCBCCSSSSCCEECCBSCCCEEEEEEECC---------------CEEESCCHH
T ss_pred HHHHHHHHHHHHHHHhCCCeEEecCCceEecccccccccccccccCeEEEEEEEEccccccccccccccCCeEEeCCCHH
Confidence 9999999999999999999 67889999999983 1 7899999999
Q ss_pred HHhhccccEEEEecCCcccccCCCCccccCCccccc-eEEEEecC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 024064 189 EEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHG-IITSVTHG--AMSVDDYFHCLERGRAASAKLSDFLRRSLQSKL 265 (273)
Q Consensus 189 Ee~~~~~~~~va~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~G--~~~~~~~~~~l~~A~~~~~~i~~~i~~~l~~~~ 265 (273)
|+..+++.++|+++. ++ ++.++..| .++.+++.+|++.|.+++++|+++|+++|++..
T Consensus 227 Ee~~~~~~l~Va~~~-------------------~g~i~~l~~~g~~~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~ 287 (305)
T 2wp8_A 227 EELLRDGVLTVTLNK-------------------NREVVQVSKAGGLPMDALTLMKCCHEAYSIIEKITDQILQLLKEDS 287 (305)
T ss_dssp HHHHCSEEEEEEECT-------------------TSEEEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCCcEEEEEcC-------------------CCcEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999873 33 44445444 799999999999999999999999999998776
Q ss_pred cCc
Q 024064 266 PGD 268 (273)
Q Consensus 266 ~~~ 268 (273)
.++
T Consensus 288 ~~r 290 (305)
T 2wp8_A 288 EKR 290 (305)
T ss_dssp HHH
T ss_pred HHh
Confidence 554
No 23
>3gme_A Polyribonucleotide nucleotidyltransferase; protein-RNA complex, cytoplasm, nucleotidyltransferase, RNA- binding, transferase, hydrolase; 2.40A {Escherichia coli E24377A} PDB: 3gll_A 3gcm_A 3h1c_A 3cdj_A
Probab=100.00 E-value=1.5e-38 Score=310.27 Aligned_cols=213 Identities=20% Similarity=0.288 Sum_probs=181.6
Q ss_pred CCCCCCCCCCCCCcccEEEeCCCCCCCceEEEEeCcccccccccccccceeeccccccccccCCCCcEEEEEE-EcccCC
Q 024064 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLAAV-YGPKAG 80 (273)
Q Consensus 2 ~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~T~Vl~~V-~gp~~~ 80 (273)
++.|+|||+++|+||+.+++|++++++|||+|++| +|+|+|+| +||.+.
T Consensus 312 ~g~R~DGR~~~elRpi~i~~g~l~~a~GSal~~~G------------------------------~T~Vl~~Vt~gp~~~ 361 (549)
T 3gme_A 312 GEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRG------------------------------ETQALVTATLGTARD 361 (549)
T ss_dssp TCCCTTSCCTTCCCCEEEEECCCSSSSEEEEEEET------------------------------TEEEEEEEEEEC---
T ss_pred CCCCCCCCCCCCccceEEEECCCCCCCceEEEEEC------------------------------CeEEEEEEEecCccc
Confidence 68999999999999999999999999999999999 99999999 699764
Q ss_pred CCC-C----CCCceEEEEEEEecCC-------CCCCchHHHHHHHHHHHhhhhhh-cCCCCCcEEEEEEEEEecCCCchh
Q 024064 81 TKK-N----ENPEKASIEVIWKPRT-------GQIGKPEKEYEIILKRTLQSICI-LTINPNTTTSVIIQVVHDDGALLP 147 (273)
Q Consensus 81 ~~~-~----~~~~~~~l~v~~~p~~-------g~~~~~~~~l~~~l~~~l~s~i~-~~~~p~~~I~i~v~Vl~~dG~ll~ 147 (273)
.+. + +...++.+++++.|++ |++++++++++++++|+|+++|. .+.||++ |+|+++||++|||.++
T Consensus 362 ~~~~~~l~~~~~g~~~~~y~~~P~st~e~~~~g~~~~Reie~~~li~raL~~vI~~~~~~P~t-I~V~~~VLesDGs~~~ 440 (549)
T 3gme_A 362 AQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT-VRVVSEITESNGSSSM 440 (549)
T ss_dssp ------------CCEEEEEECCGGGTTCCCCSSCCCSSHHHHHHHHHHHHTTTCCCTTTCCCE-EEEEEEEEECSSCHHH
T ss_pred ccCccccCCCCceEEEEEEEeCCCCcCCcccCCCCChhHHHHHHHHHHHHHHhcCccccCCeE-EEEEEEEEECCCCHHH
Confidence 322 1 1235677889999964 34678899999999999999998 5788855 9999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcccceeEEEEEEeeCC---eEEeCCCHHHHhhccccEEEEecCCcccccCCCCccccCCccccc
Q 024064 148 CAINAACAALVDAGIPMKHLAVAICCCSAESG---YCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHG 224 (273)
Q Consensus 148 a~inAa~lAL~dagIp~~~~~~avsv~~~~~~---~~ilDPt~~Ee~~~~~~~~va~~~~~~~~~~~~~~~~~~~~~~~~ 224 (273)
|++||+++||+||||||+++++|+++|+..++ .+++||+..|+..++..+.++.+. ++
T Consensus 441 AsI~aa~lAL~DAGvPm~~~Vaavs~Gli~~g~~~~iL~D~~~~Ed~~~d~d~~Va~t~-------------------~g 501 (549)
T 3gme_A 441 ASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSR-------------------DG 501 (549)
T ss_dssp HHHHHHHHHHHHHTCCCSSCCEEEEEEEEEETTEEEEEESCCHHHHHHSSEEEEEEECS-------------------SC
T ss_pred HHHHHHHHHHHhCCCCcccceeEEEEEEEcCCCceEEEecCChHHHccCCceEEEEecC-------------------CC
Confidence 99999999999999999999999999998543 689999999999999999888652 45
Q ss_pred eEEEEec---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024064 225 IITSVTH---GAMSVDDYFHCLERGRAASAKLSDFLRRSLQSK 264 (273)
Q Consensus 225 ~v~~~~~---G~~~~~~~~~~l~~A~~~~~~i~~~i~~~l~~~ 264 (273)
++.++.+ +.++.+++.+|+++|.+++.+|+++|+++|.+.
T Consensus 502 italqmd~ki~G~s~~~l~~~L~~A~~g~~~I~~~m~~al~~p 544 (549)
T 3gme_A 502 ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAP 544 (549)
T ss_dssp EEEEEEEECCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred eEEEEEccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5545433 348999999999999999999999999999764
No 24
>2nn6_E Exosome complex exonuclease RRP42; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=5.4e-39 Score=294.88 Aligned_cols=215 Identities=21% Similarity=0.235 Sum_probs=182.3
Q ss_pred CCCCCCCCCCCCCcccEEEeCCCCCCCceEEEEeCcccccccccccccceeeccccccccccCCCCcEEEEEEEcccCCC
Q 024064 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLAAVYGPKAGT 81 (273)
Q Consensus 2 ~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~T~Vl~~V~gp~~~~ 81 (273)
+++|+|||+++|+|++.+++|++++++|||+|++| +|+|+|+|+++...
T Consensus 34 ~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G------------------------------~T~Vl~~V~~e~~~- 82 (305)
T 2nn6_E 34 EDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLG------------------------------HTDILVGVKAEMGT- 82 (305)
T ss_dssp TTCCSSSCCSSCCCCCEEEECCCTTSSSEEEEEET------------------------------TEEEEEECCCCCSC-
T ss_pred cCCCCCCCCCcCccCeEEEeCcccCCCcEEEEEEC------------------------------CeEEEEEEEEEeeC-
Confidence 57899999999999999999999999999999999 99999999998753
Q ss_pred CCCCCCce--EEEEEEEecCC-----CCCC-chHHHHHHHHHHHhhh--hhhcC---CCC---CcEEEEEEEEEecCCCc
Q 024064 82 KKNENPEK--ASIEVIWKPRT-----GQIG-KPEKEYEIILKRTLQS--ICILT---INP---NTTTSVIIQVVHDDGAL 145 (273)
Q Consensus 82 ~~~~~~~~--~~l~v~~~p~~-----g~~~-~~~~~l~~~l~~~l~s--~i~~~---~~p---~~~I~i~v~Vl~~dG~l 145 (273)
+..+.|++ +.++|++.|++ +++. +++.+++++|+|+|++ +|+++ .+| .|.|+|+++||++|||+
T Consensus 83 p~~~~~~~g~l~~~v~~~p~a~~~~~~r~~~~~~~~isrli~r~lr~s~~idl~~L~i~p~~~~w~i~idv~VL~~DG~~ 162 (305)
T 2nn6_E 83 PKLEKPNEGYLEFFVDCSASATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLKTLCISPREHCWVLYVDVLLLECGGNL 162 (305)
T ss_dssp CCSSSCSSCCEEEECCCCTTTCSSCCTTSTHHHHHHHHHHHHHHHHHSCCSCSSSSCSSTTTCCCCEEEEEEECCCCSSH
T ss_pred CCcCCCCceEEEEEEEeCCCcCccccCCCCchHHHHHHHHHHHHHhhcCcccHHHheeccCcEEEEEEEEEEEECCCCCH
Confidence 23344544 56677778864 2332 5778999999999998 56665 455 47899999999999999
Q ss_pred hhHHHHHHHHHHHhCCCCcccc---------------------------eeEEEEEEeeCCeEEeCCCHHHHhhccccEE
Q 024064 146 LPCAINAACAALVDAGIPMKHL---------------------------AVAICCCSAESGYCILDPTKLEEQKMKGFAY 198 (273)
Q Consensus 146 l~a~inAa~lAL~dagIp~~~~---------------------------~~avsv~~~~~~~~ilDPt~~Ee~~~~~~~~ 198 (273)
++||++|+++||.+++||+.++ |+++++|++ ++.+|+||+.+|+..+++.++
T Consensus 163 ~daai~aa~~AL~~a~iP~~~~~~~~~~~~~i~~~~d~~~~~~l~l~~~p~avt~g~i-~~~~l~Dpt~~Ee~~~~~~l~ 241 (305)
T 2nn6_E 163 FDAISIAVKAALFNTRIPRVRVLEDEEGSKDIELSDDPYDCIRLSVENVPCIVTLCKI-GYRHVVDATLQEEACSLASLL 241 (305)
T ss_dssp HHHHHHHHHHTTTTCCCCEEEEECC------EEEEESSCCCSCCCCTTCCCCEEEEES-SSSEESSCCHHHHTSCSEEEE
T ss_pred HHHHHHHHHHHHHhcCCCeEEEecCCCCceeeeccCcccccccccccCceEEEEEEEE-CCEEEECCCHHHHhhcCCcEE
Confidence 9999999999999999997644 679999987 889999999999999999999
Q ss_pred EEecCCcccccCCCCccccCCccccceEEEEecC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 024064 199 LVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHG--AMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLP 266 (273)
Q Consensus 199 va~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~G--~~~~~~~~~~l~~A~~~~~~i~~~i~~~l~~~~~ 266 (273)
++++.. ..++.++..| .++++++.+|++.|.++++++.+++++++++...
T Consensus 242 Va~~~~------------------g~i~~i~~~g~~~l~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~~ 293 (305)
T 2nn6_E 242 VSVTSK------------------GVVTCMRKVGKGSLDPESIFEMMETGKRVGKVLHASLQSVVHKEES 293 (305)
T ss_dssp ECCCSS------------------SCCCEEEEEESSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred EEEcCC------------------CCEEEEEccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 998642 1234444444 8999999999999999999999999999987655
No 25
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=100.00 E-value=1.4e-37 Score=308.50 Aligned_cols=212 Identities=18% Similarity=0.274 Sum_probs=184.2
Q ss_pred CCCCCCCCCCCCCcccEEEeCCCCCCCceEEEEeCcccccccccccccceeeccccccccccCCCCcEEEEEEEcccCCC
Q 024064 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLAAVYGPKAGT 81 (273)
Q Consensus 2 ~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~T~Vl~~V~gp~~~~ 81 (273)
++.|+|||+++|+||+++++|++++++|||+|++| +|+|+|+|++|...+
T Consensus 316 ~g~R~DGR~~~elRpi~i~~g~l~~a~GSal~~~G------------------------------~T~Vl~~Vt~~~~~~ 365 (630)
T 3u1k_A 316 EYKRCDGRDLTSLRNVSCEVDMFKTLHGSALFQRG------------------------------QTQVLCTVTFDSLES 365 (630)
T ss_dssp HSCCTTSCCTTCCCCEEEEECCSTTSSEEEEEEET------------------------------TEEEEEEEEEECGGG
T ss_pred CCCCCCCCCCccccceEEEECCCCCCCceEEEEEC------------------------------CeEEEEEEEcCCCCc
Confidence 58999999999999999999999999999999999 999999999855322
Q ss_pred C-C---------CCCCceEEEEEEEecCC-------CCCCchHHHHHHHHHHHhhhhhhcCCCCCcEEEEEEEEEecCCC
Q 024064 82 K-K---------NENPEKASIEVIWKPRT-------GQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGA 144 (273)
Q Consensus 82 ~-~---------~~~~~~~~l~v~~~p~~-------g~~~~~~~~l~~~l~~~l~s~i~~~~~p~~~I~i~v~Vl~~dG~ 144 (273)
. + .....++.+++++.|++ |.+++++.+++++++|+|++++. ..||+ .|+|+++||++|||
T Consensus 366 ~~~~d~~~~~l~~~~~g~~~~~y~~~P~st~e~~~~g~~~rREi~~~~Li~raLr~vi~-~~~p~-tI~V~~~VLesDGs 443 (630)
T 3u1k_A 366 GIKSDQVITAINGIKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHGALAEKALYPVIP-RDFPF-TIRVTSEVLESNGS 443 (630)
T ss_dssp GSCSSHHHHHHHCCCGGGEEEEEECCGGGGTCCCCCSSCCHHHHHHHHHHHHHHGGGSC-TTCSS-EEEEEEEEEECSSC
T ss_pred hhcccccccccCCCCceEEEEEEEecCCcccccccCCCCChHHHHHHHHHHHHHHhhCc-ccCCe-EEEEEEEEEEcCCC
Confidence 1 1 12334688899999975 44577889999999999999987 56774 69999999999999
Q ss_pred chhHHHHHHHHHHHhCCCCcccceeEEEEEEeeC-----C-----eEEeCCCHHHHhhccccEEEEecCCcccccCCCCc
Q 024064 145 LLPCAINAACAALVDAGIPMKHLAVAICCCSAES-----G-----YCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSS 214 (273)
Q Consensus 145 ll~a~inAa~lAL~dagIp~~~~~~avsv~~~~~-----~-----~~ilDPt~~Ee~~~~~~~~va~~~~~~~~~~~~~~ 214 (273)
.++|+++|+++||+||||||+++++++++|+..+ + .+++||+..|+..++..+.++.+.
T Consensus 444 ~~~AsI~aa~lAL~dAGIPl~~~Vaavs~gli~~~~~~~g~~~~~~iLlD~~~~Ed~~~d~d~~Va~t~----------- 512 (630)
T 3u1k_A 444 SSMASACGGSLALMDSGVPISSAVAGVAIGLVTKTDPEKGEIEDYRLLTDILGIEDYNGDMDFKIAGTN----------- 512 (630)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSSCCEEEEEEEEEEECSSSSCEEEEEEEESCCHHHHHTSSEEEEEEECS-----------
T ss_pred HHHHHHHHHHHHHHhCCCCcccceEEEEEEEecCCCcccccccCceEEecCCHHHHhhCcceEEEEecC-----------
Confidence 9999999999999999999999999999999862 3 799999999999999888888752
Q ss_pred cccCCccccceEEEEecC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024064 215 LVQGEPMEHGIITSVTHG---AMSVDDYFHCLERGRAASAKLSDFLRRSLQSK 264 (273)
Q Consensus 215 ~~~~~~~~~~~v~~~~~G---~~~~~~~~~~l~~A~~~~~~i~~~i~~~l~~~ 264 (273)
++++.++..| .++.+++.+|+++|.+++++|+++|+++|.+.
T Consensus 513 --------~gIt~lQ~~~k~~~~s~~~l~~aL~~A~~g~~~I~~~m~~al~~~ 557 (630)
T 3u1k_A 513 --------KGITALQADIKLPGIPIKIVMEAIQQASVAKKEILQIMNKTISKP 557 (630)
T ss_dssp --------SCEEEEEEEECSSCBCHHHHHHHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred --------CceEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555444 78999999999999999999999999999865
No 26
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=100.00 E-value=1.1e-37 Score=312.21 Aligned_cols=213 Identities=17% Similarity=0.222 Sum_probs=184.7
Q ss_pred CCCCCCCCCCCCCcccEEEeCCCCCCCceEEEEeCcccccccccccccceeeccccccccccCCCCcEEEEEE-EcccCC
Q 024064 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLAAV-YGPKAG 80 (273)
Q Consensus 2 ~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~T~Vl~~V-~gp~~~ 80 (273)
++.|+|||+++|+||+.+++|++++++|||+|++| +|+|+|+| +||.++
T Consensus 328 ~g~R~DGR~~~elRpI~ie~gvl~~a~GSAl~~~G------------------------------~TkVl~~Vt~Gp~~~ 377 (726)
T 4aid_A 328 TGLRIDGRDVKTVRPILGEVGILPRTHGSALFTRG------------------------------ETQAIVVATLGTGDD 377 (726)
T ss_dssp SSBCTTSCBTTCCCCEEEEECSSTTSSEEEEEEET------------------------------TEEEEEEEEEECGGG
T ss_pred CCCCCCCCCCCCccceEEEECCCCCCCceEEEEeC------------------------------CeEEEEEEEeCCCCc
Confidence 68999999999999999999999999999999999 99999999 799875
Q ss_pred CCCC---CCCc--eEEEEEEEecCC-------CCCCchHHHHHHHHHHHhhhhhh-cCCCCCcEEEEEEEEEecCCCchh
Q 024064 81 TKKN---ENPE--KASIEVIWKPRT-------GQIGKPEKEYEIILKRTLQSICI-LTINPNTTTSVIIQVVHDDGALLP 147 (273)
Q Consensus 81 ~~~~---~~~~--~~~l~v~~~p~~-------g~~~~~~~~l~~~l~~~l~s~i~-~~~~p~~~I~i~v~Vl~~dG~ll~ 147 (273)
+++. ..++ ++.+++++.|++ |.+++++++++++++|+|+++|. .+.||++ |+|+++||++|||.++
T Consensus 378 ~~~~d~l~~~~~g~~~~~y~~~P~st~er~~~g~~~~Reie~~~li~raL~~vI~~~~~~P~t-I~V~~~VLesDGs~~~ 456 (726)
T 4aid_A 378 EQFIDALEGTYKESFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRALRPMLPTKEDFPYT-IRLVSEITESNGSSSM 456 (726)
T ss_dssp SEEEEETTEEEEECEEEEEECCGGGGTCCCCCSSCCHHHHHHHHHHHHHHGGGSCCTTTCCCE-EEEEEEEEECSSCHHH
T ss_pred ccccccccCCCceEEEEEEEeCCCcccccccCCCcchhhHHHHHHHHHHHHHhcCccccCCeE-EEEEEEEEEcCCcHHH
Confidence 4321 1123 466788888864 34677899999999999999998 6788865 9999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcccceeEEEEEEeeCC---eEEeCCCHHHHhhccccEEEEecCCcccccCCCCccccCCccccc
Q 024064 148 CAINAACAALVDAGIPMKHLAVAICCCSAESG---YCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHG 224 (273)
Q Consensus 148 a~inAa~lAL~dagIp~~~~~~avsv~~~~~~---~~ilDPt~~Ee~~~~~~~~va~~~~~~~~~~~~~~~~~~~~~~~~ 224 (273)
|++||+++||+||||||+++++++++|+..++ .+++||+..|+..++..+.++.+ ..+
T Consensus 457 AsI~aa~lAL~DAGIPm~~~VaavsvGli~~g~~~~iLlD~~~~Ed~~gd~d~~Va~t-------------------~~g 517 (726)
T 4aid_A 457 ATVCGSSLAMMDAGVPLVRPVSGIAMGLILEQDGFAVLSDILGDEDHLGDMDFKVAGT-------------------SEG 517 (726)
T ss_dssp HHHHHHHHHHHHTTCCCSSCCEEEEEEEEECSSCEEEEESCCTTGGGGSSEEEEEEEE-------------------TTE
T ss_pred HHHHHHHHHHHhcCCccccCeeEEEEEEEcCCCceEEEecCChhHHhcCCceEEEEec-------------------CCc
Confidence 99999999999999999999999999998653 57899999999988888888754 244
Q ss_pred eEEEEecC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024064 225 IITSVTHG---AMSVDDYFHCLERGRAASAKLSDFLRRSLQSK 264 (273)
Q Consensus 225 ~v~~~~~G---~~~~~~~~~~l~~A~~~~~~i~~~i~~~l~~~ 264 (273)
++.++..| .++.+++.+++++|.+++.+|+++|+++|.+.
T Consensus 518 It~lQ~d~k~~~~s~e~l~~aL~~A~~g~~~I~~~m~~al~~~ 560 (726)
T 4aid_A 518 LTSLQMDIKIAGITPAIMEQALAQAKEGRAHILGEMNKAMDAP 560 (726)
T ss_dssp EEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCSSC
T ss_pred eEEEEecCCcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55555444 67999999999999999999999999999864
No 27
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=100.00 E-value=3.3e-37 Score=310.85 Aligned_cols=213 Identities=17% Similarity=0.219 Sum_probs=185.8
Q ss_pred CCCCCCCCCCCCCcccEEEeCCCCCCCceEEEEeCcccccccccccccceeeccccccccccCCCCcEEEEEE-EcccCC
Q 024064 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLAAV-YGPKAG 80 (273)
Q Consensus 2 ~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~T~Vl~~V-~gp~~~ 80 (273)
++.|+|||.++|+||+.+++|++++++|||+|++| +|+|+|+| .||.++
T Consensus 353 ~g~R~DGR~~~elRpI~ie~gvl~~a~GSAl~~~G------------------------------~TqVL~~Vt~Gp~~~ 402 (757)
T 1e3p_A 353 EKKRIDGRGVTDIRTLAAEVEAIPRVHGSALFERG------------------------------ETQILGVTTLNMLRM 402 (757)
T ss_dssp TCBCTTSCBTTCCCCEEEEECCSSSSSEEEEEEET------------------------------TEEEEEEEEEEEGGG
T ss_pred CCCCCCCCCcccccceeEEeCCCCCCCEEEEEEEC------------------------------CcEEEEEEEecCCCc
Confidence 68999999999999999999999999999999999 99999999 599875
Q ss_pred CCCCC---CCc--eEEEEEEEecCC-------CCCCchHHHHHHHHHHHhhhhhh-cCCCCCcEEEEEEEEEecCCCchh
Q 024064 81 TKKNE---NPE--KASIEVIWKPRT-------GQIGKPEKEYEIILKRTLQSICI-LTINPNTTTSVIIQVVHDDGALLP 147 (273)
Q Consensus 81 ~~~~~---~~~--~~~l~v~~~p~~-------g~~~~~~~~l~~~l~~~l~s~i~-~~~~p~~~I~i~v~Vl~~dG~ll~ 147 (273)
.++.+ .++ ++.+++++.|++ |.+++++++++++++|+|+++|. .+.||+ .|+|+++||++|||+++
T Consensus 403 ~~~~d~l~~~~~g~~~~~y~f~P~st~e~~~~g~~~~reie~~~li~raL~~vI~~~~~~P~-tI~V~~~VLesDGs~~~ 481 (757)
T 1e3p_A 403 EQQLDTLSPVTRKRYMHNYNFPPYSVGETGRVGSPKRREIGHGALAERAIVPVLPTREEFPY-AIRQVSEALGSNGSTSM 481 (757)
T ss_dssp SEECCSSSSCCEESEEEEEECCGGGGTCCCCCSSCCHHHHHHHHHHHHHHGGGCCCTTTSCE-EEEEEEEEEECSSCHHH
T ss_pred cccccccCCCCceEEEEEEEeCCcccccccCCCCCchhHHHHHHHHHHHHHHhccccccCCE-EEEEEEEEEECCCCHHH
Confidence 43322 334 467889999963 34677899999999999999998 678885 59999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcccceeEEEEEEeeC---C----eEEeCCCHHHHhhccccEEEEecCCcccccCCCCccccCCc
Q 024064 148 CAINAACAALVDAGIPMKHLAVAICCCSAES---G----YCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEP 220 (273)
Q Consensus 148 a~inAa~lAL~dagIp~~~~~~avsv~~~~~---~----~~ilDPt~~Ee~~~~~~~~va~~~~~~~~~~~~~~~~~~~~ 220 (273)
|+++|+++||+||||||+++++++++|+..+ + .+++||+..|+..++..++++.+
T Consensus 482 Asi~aa~lAL~dAgIP~k~~Vaavs~gli~eg~dg~~~~~iLlDp~~~Ed~~gd~d~~Va~t------------------ 543 (757)
T 1e3p_A 482 GSVCASTMSLLNAGVPLKAPVAGIAMGLISQEINGETHYVALTDILGAEDAFGDMDFKVAGT------------------ 543 (757)
T ss_dssp HHHHHHHHHHHHHTCCCSSCCEEEEEEEEEEESSSCEEEEEEESCCHHHHHHCSEEEEEEEC------------------
T ss_pred HHHHHHHHHHHHcCCCcccceEEEEEEEEecCCCCccceeEEeCCCHHHHhccCceEEEEec------------------
Confidence 9999999999999999999999999999843 2 79999999999999999999853
Q ss_pred cccceEEEEec---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024064 221 MEHGIITSVTH---GAMSVDDYFHCLERGRAASAKLSDFLRRSLQSK 264 (273)
Q Consensus 221 ~~~~~v~~~~~---G~~~~~~~~~~l~~A~~~~~~i~~~i~~~l~~~ 264 (273)
..+++.++.. +.++.+++.+|++.|.+++++|+++|+++|.+.
T Consensus 544 -~~~It~lQ~~gk~~gi~~e~l~~aL~~A~~~~~~I~~~m~~al~~~ 589 (757)
T 1e3p_A 544 -KEFVTALQLDTKLDGIPASVLAAALKQARDARLHILDVMMEAIDTP 589 (757)
T ss_dssp -SSSEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred -CCeEEEEEEcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 2345555544 457999999999999999999999999999876
No 28
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=100.00 E-value=7.6e-37 Score=307.19 Aligned_cols=214 Identities=20% Similarity=0.269 Sum_probs=179.8
Q ss_pred CCCCCCCCCCCCCcccEEEeCCCCCCCceEEEEeCcccccccccccccceeeccccccccccCCCCcEEEEEE-EcccCC
Q 024064 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLAAV-YGPKAG 80 (273)
Q Consensus 2 ~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~T~Vl~~V-~gp~~~ 80 (273)
++.|+|||.++|+||+.+++|++++++|||+|++| +|+|+|+| .||.+.
T Consensus 318 ~g~R~DGR~~~elRpI~ie~gvl~~a~GSAl~~~G------------------------------~TqVL~~Vt~gp~e~ 367 (723)
T 3cdi_A 318 GEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRG------------------------------ETQALVTATLGTARD 367 (723)
T ss_dssp TCCCTTSCCTTCCCCEEEEESCSTTSSEEEEEEET------------------------------TEEEEEEEEECC---
T ss_pred cCcCCCCCCccccccceEEeCCCCCCCeEEEEEEC------------------------------CcEEEEEEEecCccc
Confidence 68999999999999999999999999999999999 99999999 699864
Q ss_pred CCC-----CCCCceEEEEEEEecCC-------CCCCchHHHHHHHHHHHhhhhhhc-CCCCCcEEEEEEEEEecCCCchh
Q 024064 81 TKK-----NENPEKASIEVIWKPRT-------GQIGKPEKEYEIILKRTLQSICIL-TINPNTTTSVIIQVVHDDGALLP 147 (273)
Q Consensus 81 ~~~-----~~~~~~~~l~v~~~p~~-------g~~~~~~~~l~~~l~~~l~s~i~~-~~~p~~~I~i~v~Vl~~dG~ll~ 147 (273)
.+. .+...++.+++++.|++ |.+++++.+++++++|+|+++|.+ +.|| |.|+|+++||++|||+++
T Consensus 368 ~~~~d~l~~~~~g~~~~~y~~~P~st~e~~r~g~p~~REi~~~~li~raL~~vI~~~~~~p-~tI~Vd~~VLesdGs~~~ 446 (723)
T 3cdi_A 368 AQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFP-YTVRVVSEITESNGSSSM 446 (723)
T ss_dssp ----------CTTSEEEEEECCGGGGTCCCCC-----CTTHHHHHHHHHHHTTSCCSSSSC-SCEEEEEEEEECSSCHHH
T ss_pred ccCCcccCCCCceEEEEEEecCCCCccccccCCCCCHHHHHHHHHHHHHHHHhcCcccCCC-EEEEEEEEEEeCCCCHHH
Confidence 322 23456788999999974 234667888999999999999986 6677 559999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcccceeEEEEEEeeCC---eEEeCCCHHHHhhccccEEEEecCCcccccCCCCccccCCccccc
Q 024064 148 CAINAACAALVDAGIPMKHLAVAICCCSAESG---YCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHG 224 (273)
Q Consensus 148 a~inAa~lAL~dagIp~~~~~~avsv~~~~~~---~~ilDPt~~Ee~~~~~~~~va~~~~~~~~~~~~~~~~~~~~~~~~ 224 (273)
|+++|+++||+||||||+++++++++|+..+| .+++||+..|+..++..++++.+. ++
T Consensus 447 Asi~aa~lAL~dAgVPl~~~vaavs~gli~~g~~~~iL~Dp~~~Ed~~~d~d~~Va~t~-------------------~g 507 (723)
T 3cdi_A 447 ASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSR-------------------DG 507 (723)
T ss_dssp HHHHHHHHHHHHTTCCCSSCCEEEEEEEEEETTEEEEESSCCGGGGGGCSEEEEEEECS-------------------SC
T ss_pred HHHHHHHHHHhcCCCCcccceeeEEEEEEcCCCceEEEECCChHHhhhccceeeecccC-------------------Cc
Confidence 99999999999999999999999999998644 499999999999999999998753 45
Q ss_pred eEEEEec---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 024064 225 IITSVTH---GAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKL 265 (273)
Q Consensus 225 ~v~~~~~---G~~~~~~~~~~l~~A~~~~~~i~~~i~~~l~~~~ 265 (273)
++.++.. |.++.+++.+|++.|.+++.+|+++|+++|.+..
T Consensus 508 I~~lq~~gk~~~is~e~l~~~l~~A~~~~~~I~~~m~~al~~~~ 551 (723)
T 3cdi_A 508 ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPR 551 (723)
T ss_dssp EEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred eEEEEeCCccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 5555543 5789999999999999999999999999998763
No 29
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=99.97 E-value=1.5e-30 Score=258.08 Aligned_cols=197 Identities=19% Similarity=0.190 Sum_probs=168.8
Q ss_pred CCcccEEEeCCCCC-CCceEEEEeCcccccccccccccceeeccccccccccCCCCcEEEEEEEcccCCCCCCCCCceEE
Q 024064 13 QLRPLACSCSILHR-AHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLAAVYGPKAGTKKNENPEKAS 91 (273)
Q Consensus 13 e~R~i~i~~~~l~~-a~GSa~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~T~Vl~~V~gp~~~~~~~~~~~~~~ 91 (273)
.-|++.+++|.+.+ |+|||++++| +|+|+|+|+||+++++. +++.
T Consensus 13 ~~R~i~ietG~~a~qA~GSa~v~~G------------------------------~T~VL~tv~~~~~~~~~----df~p 58 (630)
T 3u1k_A 13 GNRKLEISSGKLARFADGSAVVQSG------------------------------DTAVMVTAVSKTKPSPS----QFMP 58 (630)
T ss_dssp SSSEEEEEESSSCTTSSEEEEEEET------------------------------TEEEEEEEEECSSCCSS----SSCC
T ss_pred CCEEEEEEeCCccccCCeeEEEEEC------------------------------CeEEEEEEEecCCCCCC----CeeE
Confidence 46999999999986 9999999999 99999999999976532 5656
Q ss_pred EEEEEe--cCC------------CCCCchHHHHHHHHHHHhhhhhhcCCCCCcEEEEEEEEEecCCCc--hhHHHHHHHH
Q 024064 92 IEVIWK--PRT------------GQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL--LPCAINAACA 155 (273)
Q Consensus 92 l~v~~~--p~~------------g~~~~~~~~l~~~l~~~l~s~i~~~~~p~~~I~i~v~Vl~~dG~l--l~a~inAa~l 155 (273)
|.|+|. |++ |+++.++.+++++|+|.|++++....+|. ++|+++||++||+. ..+|+|||++
T Consensus 59 L~v~y~~~~~a~g~iPg~f~kRegrps~~e~lisRlIdR~lRp~~~~~~~~~--~qI~~~VLs~Dg~~~~~~aai~aAs~ 136 (630)
T 3u1k_A 59 LVVDYRQKAAAAGRIPTNYLRREVGTSDKEILTSRIIDRSIRPLFPAGYFYD--TQVLCNLLAVDGVNEPDVLAINGASV 136 (630)
T ss_dssp EEEEEECSEETTTTEECTTC-----CCHHHHHHHHHHHHHHGGGSCTTCCCC--EEEEEEEEECCSSSCHHHHHHHHHHH
T ss_pred EEEEEEecccccCCCCccccccCCCCCHHHHHHHHHHhHHhhhcccccCCCc--eEEEEEEEECCCCCCHHHHHHHHHHH
Confidence 777775 322 45677889999999999999999877654 56899999999998 8899999999
Q ss_pred HHHhCCCCcccceeEEEEEEeeCCeEEeCCCHHHHhhccccEEEEecCCcccccCCCCccccCCccccceEEEEecC-CC
Q 024064 156 ALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHG-AM 234 (273)
Q Consensus 156 AL~dagIp~~~~~~avsv~~~~~~~~ilDPt~~Ee~~~~~~~~va~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~G-~~ 234 (273)
||.++||||+++++|++||+. +|.+|+|||.+|++.++..++|+++.. ..+++++..| .+
T Consensus 137 AL~~s~iP~~~~vaav~vg~i-~g~~vldPt~~E~~~s~~dl~Va~t~~------------------~~i~mve~~~~~~ 197 (630)
T 3u1k_A 137 ALSLSDIPWNGPVGAVRIGII-DGEYVVNPTRKEMSSSTLNLVVAGAPK------------------SQIVMLEASAENI 197 (630)
T ss_dssp HHHHSSSCCCCCCEEEEEEEE-TTEEEESCCHHHHHTEEEEEEEEEETT------------------TEEEEEEEEEEEE
T ss_pred HHhccCCCcCCCeEEEEEEEE-CCEEEECCCHHHHhhCCceEEEEEccC------------------CcEEEEECCCccC
Confidence 999999999999999999986 899999999999999999999998731 2344455555 49
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024064 235 SVDDYFHCLERGRAASAKLSDFLRRSLQSK 264 (273)
Q Consensus 235 ~~~~~~~~l~~A~~~~~~i~~~i~~~l~~~ 264 (273)
+++++.++++.|.++++++.+++++.+++.
T Consensus 198 se~~~~~al~~a~~~~~~l~~~~~~~~~~~ 227 (630)
T 3u1k_A 198 LQQDFCHAIKVGVKYTQQIIQGIQQLVKET 227 (630)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988754
No 30
>3gme_A Polyribonucleotide nucleotidyltransferase; protein-RNA complex, cytoplasm, nucleotidyltransferase, RNA- binding, transferase, hydrolase; 2.40A {Escherichia coli E24377A} PDB: 3gll_A 3gcm_A 3h1c_A 3cdj_A
Probab=99.96 E-value=1.4e-27 Score=233.07 Aligned_cols=197 Identities=17% Similarity=0.178 Sum_probs=168.8
Q ss_pred CCcccEEEeCCCC-CCCceEEEEeCcccccccccccccceeeccccccccccCCCCcEEEEEEEcccCCCCCCCCCceEE
Q 024064 13 QLRPLACSCSILH-RAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLAAVYGPKAGTKKNENPEKAS 91 (273)
Q Consensus 13 e~R~i~i~~~~l~-~a~GSa~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~T~Vl~~V~gp~~~~~~~~~~~~~~ 91 (273)
.-|++.+++|.+. +|+||+.+++| +|+|+|+|+++.+++ +..+.+.
T Consensus 12 ~~R~i~ietg~~ak~A~GSvlv~~G------------------------------dT~Vl~tv~~~~~~~---~g~df~P 58 (549)
T 3gme_A 12 GQHTVTLETGMMARQATAAVMVSMD------------------------------DTAVFVTVVGQKKAK---PGQDFFP 58 (549)
T ss_dssp TTEEEEEEESSSCTTSSEEEEEEET------------------------------TEEEEEEEEECSSCC---TTCCSCC
T ss_pred CCEEEEEEECCccCCCCeEEEEEEC------------------------------CEEEEEEEEecCCCC---CCCCCcc
Confidence 4689999999886 59999999999 999999999988643 2235666
Q ss_pred EEEEEec--------------CCCCCCchHHHHHHHHHHHhhhhhhcCCCCCcEEEEEEEEEecCCCch--hHHHHHHHH
Q 024064 92 IEVIWKP--------------RTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALL--PCAINAACA 155 (273)
Q Consensus 92 l~v~~~p--------------~~g~~~~~~~~l~~~l~~~l~s~i~~~~~p~~~I~i~v~Vl~~dG~ll--~a~inAa~l 155 (273)
+.|+|.+ +.|+++.++.+++++|+|.|++++.... ++.++|+++||+.||+.. .+|+|||++
T Consensus 59 ltv~Y~e~~~a~G~iPg~~~~REGrps~~~~l~~RlIdR~lRplfp~~~--~~evqI~~~Vls~D~~~~pd~~ai~gAs~ 136 (549)
T 3gme_A 59 LTVNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGF--VNEVQVIATVVSVNPQVNPDIVAMIGASA 136 (549)
T ss_dssp EEEEEEECGGGTTCCCSCC-----CCCHHHHHHHHHHHHHHGGGSCTTC--CSCEEEEEEEEECCSSSCHHHHHHHHHHH
T ss_pred ceeeeeeehhhcccCCCcCcCcCCCCChhhhHHHHHhCCccccccccCC--cccEEEEEEEEecCCCCcHHHHHHHHHHH
Confidence 8888853 1377888999999999999999987765 457999999999999763 688999999
Q ss_pred HHHhCCCCcccceeEEEEEEeeCCeEEeCCCHHHHhhccccEEEEecCCcccccCCCCccccCCccccceEEEEecC-CC
Q 024064 156 ALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHG-AM 234 (273)
Q Consensus 156 AL~dagIp~~~~~~avsv~~~~~~~~ilDPt~~Ee~~~~~~~~va~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~G-~~ 234 (273)
||..++||+++.++|++||+. +|.+++||+.+|.+.++..++++.+. .++++++..| .+
T Consensus 137 AL~~s~iP~~gpvaaV~Vg~i-~g~~vlnPt~~e~~~s~~dl~va~t~-------------------~~i~mve~e~~~~ 196 (549)
T 3gme_A 137 ALSLSGIPFNGPIGAARVGYI-NDQYVLNPTQDELKESKLDLVVAGTE-------------------AAVLMVESEAELL 196 (549)
T ss_dssp HHHHHCSCCCCCCEEEEEEEE-TTEEEESCCTTTTTTCSBCEEEEECS-------------------SCEEEEEEEEEEE
T ss_pred HHhccCCCcCCCeeEEEEEEE-CCEEEECCCHHHHhhCceEEEEEecC-------------------CeEEEEEccCCCC
Confidence 999999999999999999985 99999999999999999999999752 3455556554 89
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024064 235 SVDDYFHCLERGRAASAKLSDFLRRSLQSK 264 (273)
Q Consensus 235 ~~~~~~~~l~~A~~~~~~i~~~i~~~l~~~ 264 (273)
+++++.++++.|++.++++.+++++.+++.
T Consensus 197 se~~~~~al~~a~~~i~~l~~~q~~~~~~~ 226 (549)
T 3gme_A 197 SEDQMLGAVVFGHEQQQVVIQNINELVKEA 226 (549)
T ss_dssp CHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999998754
No 31
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=99.95 E-value=4.4e-27 Score=235.74 Aligned_cols=197 Identities=17% Similarity=0.145 Sum_probs=170.5
Q ss_pred CCcccEEEeCCCC-CCCceEEEEeCcccccccccccccceeeccccccccccCCCCcEEEEEEEcccCCCCCCCCCceEE
Q 024064 13 QLRPLACSCSILH-RAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLAAVYGPKAGTKKNENPEKAS 91 (273)
Q Consensus 13 e~R~i~i~~~~l~-~a~GSa~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~T~Vl~~V~gp~~~~~~~~~~~~~~ 91 (273)
.-|++.+++|.+. +|+||+++++| +|+|+|+|+++.++++ ..+.+.
T Consensus 26 ~~R~i~ietg~~ak~A~GSvlv~~G------------------------------dT~VL~tv~~~~~~~~---g~df~p 72 (726)
T 4aid_A 26 GGKTLVLETGRIARQADGAVLATMG------------------------------ETVVLATAVFAKSQKP---GQDFFP 72 (726)
T ss_dssp TTEEEEEEESSSCTTSSEEEEEEET------------------------------TEEEEEEEEECSSCCT---TCCSCC
T ss_pred CCeeEEEEECCccCCCCeeEEEEEC------------------------------CeEEEEEEEecCCCCC---CCCCcC
Confidence 4699999999876 59999999999 9999999999886532 235566
Q ss_pred EEEEEec--------------CCCCCCchHHHHHHHHHHHhhhhhhcCCCCCcEEEEEEEEEecCCCc--hhHHHHHHHH
Q 024064 92 IEVIWKP--------------RTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL--LPCAINAACA 155 (273)
Q Consensus 92 l~v~~~p--------------~~g~~~~~~~~l~~~l~~~l~s~i~~~~~p~~~I~i~v~Vl~~dG~l--l~a~inAa~l 155 (273)
+.|+|.+ +.|+++.++.+++++|+|.|++++.... ++.++|+++||+.||+. ..+|+|||++
T Consensus 73 ltveY~ek~~a~G~iPg~~~~REGrps~~~~li~RlIdR~lRplf~~~~--~~evqI~~~Vls~Dg~~~~d~~ai~gAs~ 150 (726)
T 4aid_A 73 LTVNYQEKTFAAGKIPGGFFKREGRPSEKETLVSRLIDRPIRPLFVKGF--KNEVQVVVTVLQHDLENDPDILGMVAASA 150 (726)
T ss_dssp EEEEEEECGGGGTCCCCSTTCSCCSCCHHHHHHHHHHHHHHGGGBCTTC--CSCEEEEEEEEECCSSSCHHHHHHHHHHH
T ss_pred ceeeeeeehhhcccCCCcccCCCCCCCchhhhHHHHhCCccccccccCC--ccceEEEEEEEecCCCCChhHHHHHHHHH
Confidence 8888853 2378888999999999999999988665 57899999999999975 4689999999
Q ss_pred HHHhCCCCcccceeEEEEEEeeCCeEEeCCCHHHHhhccccEEEEecCCcccccCCCCccccCCccccceEEEEecC-CC
Q 024064 156 ALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHG-AM 234 (273)
Q Consensus 156 AL~dagIp~~~~~~avsv~~~~~~~~ilDPt~~Ee~~~~~~~~va~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~G-~~ 234 (273)
||.+++||+++.++|++||+. +|.+++||+.+|++.++..++++.+. .++++++..| .+
T Consensus 151 AL~~s~iP~~~~vaaV~Vg~i-~g~~vldPt~~E~~~s~~dl~va~t~-------------------~~i~mve~~~~~~ 210 (726)
T 4aid_A 151 ALCLSGAPFMGPIGAARVGWV-DGAYVLNPTLDEMKESKMDLVVAGTA-------------------DAVMMVESEIQEL 210 (726)
T ss_dssp HHHHHTCSBCCCCEEEEEEEE-TTEEEESCCHHHHHTCSEEEEEEECS-------------------SCEEEEEEEESSB
T ss_pred HHHhcCCCcCCCeEEEEEEEE-CCEEEECCCHHHHhhCceeEEEEEeC-------------------CeEEEEEccCCCC
Confidence 999999999999999999986 99999999999999999999999763 3455555544 79
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024064 235 SVDDYFHCLERGRAASAKLSDFLRRSLQSK 264 (273)
Q Consensus 235 ~~~~~~~~l~~A~~~~~~i~~~i~~~l~~~ 264 (273)
+++++.++++.|.++++++.+++++.+++.
T Consensus 211 se~~~~~al~~a~~~i~~l~~~q~~~~~~~ 240 (726)
T 4aid_A 211 SEEIVLGGVNFAHQQMQAVIDAIIDLAEHA 240 (726)
T ss_dssp CHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999998764
No 32
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=99.95 E-value=2.8e-27 Score=237.87 Aligned_cols=196 Identities=17% Similarity=0.182 Sum_probs=168.5
Q ss_pred CcccEEEeCCC-CCCCceEEEEeCcccccccccccccceeeccccccccccCCCCcEEEEEEEcccCCCCCCCCCceEEE
Q 024064 14 LRPLACSCSIL-HRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLAAVYGPKAGTKKNENPEKASI 92 (273)
Q Consensus 14 ~R~i~i~~~~l-~~a~GSa~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~T~Vl~~V~gp~~~~~~~~~~~~~~l 92 (273)
-|++.+++|.+ .+|+||+.+++| +|+|+|+|+++.++++ ..+.+.+
T Consensus 19 ~r~i~ietg~ia~qA~GSv~v~~G------------------------------~T~Vl~tv~~~~~~~~---~~~f~pl 65 (723)
T 3cdi_A 19 QHTVTLETGMMARQATAAVMVSMD------------------------------DTAVFVTVVGQKKAKP---GQDFFPL 65 (723)
T ss_dssp TEEEEEEESSSCTTSSEEEEEEET------------------------------TEEEEEEEEECSSCCS---SCCSCCE
T ss_pred CEEEEEEeCccccCCCeeEEEEEC------------------------------CEEEEEEEEecCCCCC---CCCeeeE
Confidence 46999999988 579999999999 9999999999875432 2356678
Q ss_pred EEEEecC--------------CCCCCchHHHHHHHHHHHhhhhhhcCCCCCcEEEEEEEEEecCCCc--hhHHHHHHHHH
Q 024064 93 EVIWKPR--------------TGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL--LPCAINAACAA 156 (273)
Q Consensus 93 ~v~~~p~--------------~g~~~~~~~~l~~~l~~~l~s~i~~~~~p~~~I~i~v~Vl~~dG~l--l~a~inAa~lA 156 (273)
+|+|.|. .|+++.++.+++++|+|.|++++.... +|.++|+++||+.||+. ..+|+|||++|
T Consensus 66 tv~y~ek~~a~g~ipg~f~kReGrpse~e~l~sRlIdR~lRplfp~~~--~~~vqv~~~vls~Dg~~~~d~~ai~aAsaA 143 (723)
T 3cdi_A 66 TVNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGF--VNEVQVIATVVSVNPQVNPDIVAMIGASAA 143 (723)
T ss_dssp EEEEEECGGGGTCCCC-------CCCHHHHHHHHHHHHHHGGGSCTTC--CSCEEEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEeEeccccccCCCccccCCCCCChHHhHHHHHhCccchhcccccC--cceEEEEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 8999753 477888999999999999999877654 78999999999999996 45999999999
Q ss_pred HHhCCCCcccceeEEEEEEeeCCeEEeCCCHHHHhhccccEEEEecCCcccccCCCCccccCCccccceEEEEecC-CCC
Q 024064 157 LVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHG-AMS 235 (273)
Q Consensus 157 L~dagIp~~~~~~avsv~~~~~~~~ilDPt~~Ee~~~~~~~~va~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~G-~~~ 235 (273)
|..++||+.+.++|++||+. +|.+++|||.+|++.++..++++.+. .+++++...| .++
T Consensus 144 L~~s~iP~~~pv~av~vg~i-~g~~v~nPt~~e~~~s~~~lvvagt~-------------------~~i~mve~~~~~~s 203 (723)
T 3cdi_A 144 LSLSGIPFNGPIGAARVGYI-NDQYVLNPTQDELKESKLDLVVAGTE-------------------AAVLMVESEAQLLS 203 (723)
T ss_dssp HHHHTSSCCCCCCCEEEEEE-TTEEEESCCTTGGGGCSEEEEEEECS-------------------SCEEEEEEEEEEEC
T ss_pred HHhcCCCCCCCeEEEEEEEE-CCEEEECcCHHHHHhCCceEEEEccC-------------------CEEEEEeCCCCCCC
Confidence 99999999999999999987 89999999999999999999988642 3344445444 699
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024064 236 VDDYFHCLERGRAASAKLSDFLRRSLQSK 264 (273)
Q Consensus 236 ~~~~~~~l~~A~~~~~~i~~~i~~~l~~~ 264 (273)
++++.++++.|.++++++.+++++++++.
T Consensus 204 e~~~~~al~~a~~~~~~l~~~~~~~~~~~ 232 (723)
T 3cdi_A 204 EDQMLGAVVFGHEQQQVVIQNINELVKEA 232 (723)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999998764
No 33
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=99.95 E-value=1.2e-26 Score=234.06 Aligned_cols=201 Identities=17% Similarity=0.075 Sum_probs=169.4
Q ss_pred CcccEEEeCCC-CCCCceEEEEe-CcccccccccccccceeeccccccccccCCCCcEEEEEEEcccCCCCCCCCCceEE
Q 024064 14 LRPLACSCSIL-HRAHGSASWSQ-GFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLAAVYGPKAGTKKNENPEKAS 91 (273)
Q Consensus 14 ~R~i~i~~~~l-~~a~GSa~v~~-G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~T~Vl~~V~gp~~~~~~~~~~~~~~ 91 (273)
-|++.+++|.+ .+|+||+++++ | +|+|+|+|++|+++++ ..+.+.
T Consensus 36 ~r~i~~etg~la~qA~GSv~v~~~G------------------------------~T~Vl~tv~~~~~~~~---~~df~p 82 (757)
T 1e3p_A 36 TRTIRFETGRLARQAAGSAVAYLDD------------------------------DTMVLSATTASKNPKD---QLDFFP 82 (757)
T ss_dssp EEEEEEEESSSCTTSSEEEEEEETT------------------------------TEEEEEEEEEEEEECT---TCSSCC
T ss_pred CEeEEEEECccccCCCeEEEEEECC------------------------------CeEEEEEEEecCCCCC---CCCCcc
Confidence 48999999987 57999999999 9 9999999999986532 224556
Q ss_pred EEEEEec--------------CCCCCCchHHHHHHHHHHHhhhhhhcCCCCCcEEEEEEEEEecCCCc--hhHHHHHHHH
Q 024064 92 IEVIWKP--------------RTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL--LPCAINAACA 155 (273)
Q Consensus 92 l~v~~~p--------------~~g~~~~~~~~l~~~l~~~l~s~i~~~~~p~~~I~i~v~Vl~~dG~l--l~a~inAa~l 155 (273)
|.|+|++ +.|+++.++++++++|+|.|++++.... +..|+|+++||++||+. ..+|||||++
T Consensus 83 Ltv~y~ek~~a~g~iPg~f~~REGrps~~e~l~~RlIdR~LRplfp~~~--~~evqv~~~Vls~D~~~~~~~~ai~gAs~ 160 (757)
T 1e3p_A 83 LTVDVEERMYAAGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGL--RNEIQVVATIMALNPDHLYDVVAINAASA 160 (757)
T ss_dssp EEEEEEECGGGGTCCCCSTTSSCCSCCHHHHHHHHHHHHHHGGGBCTTB--CEEEEEEEEEEECCTTSCCHHHHHHHHHH
T ss_pred EEEEEEecccccccCCCcccccCcCCChHHHHHHHHHCCcchhccccCC--CCceEEEEEEEEECCCCCHHHHHHHHHHH
Confidence 8888853 2477888999999999999999877644 56799999999999966 9999999999
Q ss_pred HHHhCCCCcccceeEEEEEEeeCCeEEeCCCHHHHhhccccEEEEecCCcccccCCCCccccCCccccceEEEEe-----
Q 024064 156 ALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVT----- 230 (273)
Q Consensus 156 AL~dagIp~~~~~~avsv~~~~~~~~ilDPt~~Ee~~~~~~~~va~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----- 230 (273)
||.+++||+.+.++|++||+. +|.+++||+.+|.+.++..++++.+... +. ...++++..
T Consensus 161 AL~~s~iP~~~~vaav~vg~~-~g~~vlnPt~~e~~~s~~dl~va~t~~~------------~~--~~~i~mvE~q~t~~ 225 (757)
T 1e3p_A 161 STQLAGLPFSGPIGGVRVALI-RGQWVAFPTHTELEDAVFDMVVAGRVLE------------DG--DVAIMMVEAEATEK 225 (757)
T ss_dssp HHHHTTSSBCCCCEEEEEEEE-TTEEEESCCHHHHTTEEEEEEEEEEECT------------TS--CEEEEEEEEEECSS
T ss_pred HHhccCCCCCCceEEEEEEEE-CCEEEECCCHHHHhcCceeEEEEecccc------------CC--CCcEEEEEEecccc
Confidence 999999999999999999986 8999999999999999999999986210 00 122333333
Q ss_pred --------cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024064 231 --------HGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSK 264 (273)
Q Consensus 231 --------~G~~~~~~~~~~l~~A~~~~~~i~~~i~~~l~~~ 264 (273)
.+.++++++.++++.|+++++++.+++++.+++.
T Consensus 226 ~~~~~~~~~~~~se~~l~~al~~a~~~i~~l~~~q~~~~~~~ 267 (757)
T 1e3p_A 226 TIQLVKDGAEAPTEEVVAAGLDAAKPFIKVLCKAQADLAAKA 267 (757)
T ss_dssp HHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3489999999999999999999999999988753
No 34
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=35.93 E-value=17 Score=23.10 Aligned_cols=35 Identities=17% Similarity=0.144 Sum_probs=29.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 024064 233 AMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPG 267 (273)
Q Consensus 233 ~~~~~~~~~~l~~A~~~~~~i~~~i~~~l~~~~~~ 267 (273)
.++.+.+..+-+.|...-....++|+++|.+++.+
T Consensus 15 rl~~el~~~l~~~a~~~g~s~s~~ir~ai~~~l~~ 49 (55)
T 2k9i_A 15 YIPQEWHDRLMEIAKEKNLTLSDVCRLAIKEYLDN 49 (55)
T ss_dssp EECHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred EcCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 37788888888889888888899999998887654
No 35
>2ba3_A NIKA; dimer, bacterial conjugation, relaxase, DNA binding, ribbon- helix-helix, DNA binding protein; NMR {Plasmid R64}
Probab=22.29 E-value=54 Score=20.58 Aligned_cols=30 Identities=10% Similarity=0.121 Sum_probs=26.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024064 233 AMSVDDYFHCLERGRAASAKLSDFLRRSLQ 262 (273)
Q Consensus 233 ~~~~~~~~~~l~~A~~~~~~i~~~i~~~l~ 262 (273)
.+++++...+-+.|......+.+++++++-
T Consensus 21 Rlt~eE~~~l~~~A~~~g~s~SeyiR~~~l 50 (51)
T 2ba3_A 21 RFSPVEDETIRKKAEDSGLTVSAYIRNAAL 50 (51)
T ss_dssp EECHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred EECHHHHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 488999999999999988889999998864
No 36
>1otg_A 5-carboxymethyl-2-hydroxymuconate isomerase; 2.10A {Escherichia coli} SCOP: d.80.1.2
Probab=21.49 E-value=2e+02 Score=21.60 Aligned_cols=58 Identities=12% Similarity=0.058 Sum_probs=32.9
Q ss_pred CCCceEEEEEEEecCCCCCCchHHHHHHHHHHHhhhhhhc-CCCCCcEEEEEEEEEecC
Q 024064 85 ENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICIL-TINPNTTTSVIIQVVHDD 142 (273)
Q Consensus 85 ~~~~~~~l~v~~~p~~g~~~~~~~~l~~~l~~~l~s~i~~-~~~p~~~I~i~v~Vl~~d 142 (273)
+.++.+.++|+++=..||....-+.+...|-+.+...+.. -..+...|.|.|.-++.+
T Consensus 54 ~~~~~~fvhi~i~i~~GRs~eqK~~L~~~v~~~l~~~l~~~~~~~~~~vsv~i~E~~~~ 112 (125)
T 1otg_A 54 GQHDYAFVHMTLKIGAGRSLESRQQAGEMLFELIKTHFAALMESRLLALSFEIEELHPT 112 (125)
T ss_dssp SCSCEEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHHTHHHHTTSEEEEEEEEEECCSS
T ss_pred CCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHHHHHhhhhcCCCceEEEEEEEEcCCc
Confidence 3456677777777677885444456666666666554321 122345555555555444
No 37
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=21.35 E-value=42 Score=20.18 Aligned_cols=33 Identities=12% Similarity=0.022 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 024064 234 MSVDDYFHCLERGRAASAKLSDFLRRSLQSKLP 266 (273)
Q Consensus 234 ~~~~~~~~~l~~A~~~~~~i~~~i~~~l~~~~~ 266 (273)
++.+.+.++-+.|......-..+|+++++.++.
T Consensus 9 l~~~l~~~Ld~~a~~~g~srS~~ir~ai~~~l~ 41 (45)
T 2cpg_A 9 LSESVLENLEKMAREMGLSKSAMISVALENYKK 41 (45)
T ss_dssp EEHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 566777777777777666778888888887764
Done!