BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024066
(273 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I9P|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
pdb|2I9P|B Chain B, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
pdb|2I9P|C Chain C, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
pdb|2I9P|D Chain D, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
Length = 319
Score = 255 bits (651), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 135/264 (51%), Positives = 170/264 (64%), Gaps = 12/264 (4%)
Query: 2 FSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 61
F D G +P +VAE +D +ITMLP+S + ++ Y+G NG+L+ + LLIDSSTI
Sbjct: 61 FQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGILK--KVKKGSLLIDSSTI 118
Query: 62 DPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAA 121
DP S+ ++ V EK + V +DAPVSGGV AA +G LTFMVGG ED + AA
Sbjct: 119 DPAVSKELAKEV------EKMGA----VFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAA 168
Query: 122 KPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILN 181
+ L MG N +YCG G G AAKICNN+ +A+SM+G +EA+ LG LG+ L KILN
Sbjct: 169 QELLGCMGSNVVYCGAVGTGQAAKICNNMLLAISMIGTAEAMNLGIRLGLDPKLLAKILN 228
Query: 182 SSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQ 241
SS RCWSSD+YNPVPGVM+GVP++ NY GGF + LMAKDL LA SA L S
Sbjct: 229 MSSGRCWSSDTYNPVPGVMDGVPSANNYQGGFGTTLMAKDLGLAQDSATSTKSPILLGSL 288
Query: 242 AQDIYAKLCENGHDSKDFSCVFQH 265
A IY +C G+ KDFS VFQ
Sbjct: 289 AHQIYRMMCAKGYSKKDFSSVFQF 312
>pdb|2GF2|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
pdb|2GF2|B Chain B, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
pdb|2GF2|C Chain C, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
pdb|2GF2|D Chain D, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
Length = 296
Score = 254 bits (650), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 135/264 (51%), Positives = 170/264 (64%), Gaps = 12/264 (4%)
Query: 2 FSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 61
F D G +P +VAE +D +ITMLP+S + ++ Y+G NG+L+ + LLIDSSTI
Sbjct: 39 FQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGILK--KVKKGSLLIDSSTI 96
Query: 62 DPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAA 121
DP S+ ++ V EK + V +DAPVSGGV AA +G LTFMVGG ED + AA
Sbjct: 97 DPAVSKELAKEV------EKMGA----VFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAA 146
Query: 122 KPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILN 181
+ L MG N +YCG G G AAKICNN+ +A+SM+G +EA+ LG LG+ L KILN
Sbjct: 147 QELLGCMGSNVVYCGAVGTGQAAKICNNMLLAISMIGTAEAMNLGIRLGLDPKLLAKILN 206
Query: 182 SSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQ 241
SS RCWSSD+YNPVPGVM+GVP++ NY GGF + LMAKDL LA SA L S
Sbjct: 207 MSSGRCWSSDTYNPVPGVMDGVPSANNYQGGFGTTLMAKDLGLAQDSATSTKSPILLGSL 266
Query: 242 AQDIYAKLCENGHDSKDFSCVFQH 265
A IY +C G+ KDFS VFQ
Sbjct: 267 AHQIYRMMCAKGYSKKDFSSVFQF 290
>pdb|3OBB|A Chain A, Crystal Structure Of A Possible 3-Hydroxyisobutyrate
Dehydrogenase From Pseudomonas Aeruginosa Pao1
Length = 300
Score = 155 bits (391), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 104/246 (42%), Positives = 140/246 (56%), Gaps = 14/246 (5%)
Query: 18 EASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRP-QLLIDSSTIDPQTSRNISAAVSNC 76
+ +DVVI+ LP+S HV +Y +GLL + P L+++ STI P ++R I AA
Sbjct: 58 QGADVVISXLPASQHVEGLYLDDDGLLA---HIAPGTLVLECSTIAPTSARKIHAAARER 114
Query: 77 ILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCG 136
L LDAPVSGG A AGTLTF VGG +A + A+PLF + G+N + G
Sbjct: 115 GL----------AXLDAPVSGGTAGAAAGTLTFXVGGDAEALEKARPLFEAXGRNIFHAG 164
Query: 137 GAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPV 196
G G AK+CNN +AV +G +EA LG + G+ A L +I SS W+ + YNP
Sbjct: 165 PDGAGQVAKVCNNQLLAVLXIGTAEAXALGVANGLEAKVLAEIXRRSSGGNWALEVYNPW 224
Query: 197 PGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDS 256
PGV E PASR+Y GGF ++L AKDL LA +A+ P S A +Y L + G+
Sbjct: 225 PGVXENAPASRDYSGGFXAQLXAKDLGLAQEAAQASASSTPXGSLALSLYRLLLKQGYAE 284
Query: 257 KDFSCV 262
+DFS V
Sbjct: 285 RDFSVV 290
>pdb|3Q3C|A Chain A, Crystal Structure Of A Serine Dehydrogenase From
Pseudomonas Aeruginosa Pao1 In Complex With Nad
Length = 299
Score = 154 bits (390), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 104/246 (42%), Positives = 140/246 (56%), Gaps = 14/246 (5%)
Query: 18 EASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRP-QLLIDSSTIDPQTSRNISAAVSNC 76
+ +DVVI+ LP+S HV +Y +GLL + P L+++ STI P ++R I AA
Sbjct: 57 QGADVVISXLPASQHVEGLYLDDDGLLA---HIAPGTLVLECSTIAPTSARKIHAAARER 113
Query: 77 ILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCG 136
L LDAPVSGG A AGTLTF VGG +A + A+PLF + G+N + G
Sbjct: 114 GL----------AXLDAPVSGGTAGAAAGTLTFXVGGDAEALEKARPLFEAXGRNIFHAG 163
Query: 137 GAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPV 196
G G AK+CNN +AV +G +EA LG + G+ A L +I SS W+ + YNP
Sbjct: 164 PDGAGQVAKVCNNQLLAVLXIGTAEAXALGVANGLEAKVLAEIXRRSSGGNWALEVYNPW 223
Query: 197 PGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDS 256
PGV E PASR+Y GGF ++L AKDL LA +A+ P S A +Y L + G+
Sbjct: 224 PGVXENAPASRDYSGGFXAQLXAKDLGLAQEAAQASASSTPXGSLALSLYRLLLKQGYAE 283
Query: 257 KDFSCV 262
+DFS V
Sbjct: 284 RDFSVV 289
>pdb|3CKY|A Chain A, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
pdb|3CKY|B Chain B, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
pdb|3CKY|C Chain C, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
pdb|3CKY|D Chain D, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
Length = 301
Score = 139 bits (351), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 90/253 (35%), Positives = 135/253 (53%), Gaps = 20/253 (7%)
Query: 15 EVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVS 74
+VA ASD++ T LP++ V V NGP G+L + +++D S++ P ++
Sbjct: 56 KVAAASDIIFTSLPNAGIVETVMNGPGGVLSACKA--GTVIVDMSSVSPSST-------- 105
Query: 75 NCILKEKKDSWENPV-MLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTI 133
LK K + E + +DAPVSGG AEAGTLT MVG SE ++ +P+ +GK+
Sbjct: 106 ---LKMAKVAAEKGIDYVDAPVSGGTKGAEAGTLTIMVGASEAVFEKIQPVLSVIGKDIY 162
Query: 134 YCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSY 193
+ G G G A KI NNL + +M ++EAL LG G+ T+ +I+ SS R ++ ++
Sbjct: 163 HVGDTGAGDAVKIVNNLLLGCNMASLAEALVLGVKCGLKPETMQEIIGKSSGRSYAMEAK 222
Query: 194 NPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENG 253
ME S ++ GGFA L KDL LAL + KE V P+T+ A I+ G
Sbjct: 223 ------MEKFIMSGDFAGGFAMDLQHKDLGLALEAGKEGNVPLPMTAMATQIFEGGRAMG 276
Query: 254 HDSKDFSCVFQHY 266
+D S V + +
Sbjct: 277 LGREDMSAVIKVW 289
>pdb|1YB4|A Chain A, Crystal Structure Of The Tartronic Semialdehyde Reductase
From Salmonella Typhimurium Lt2
pdb|1YB4|B Chain B, Crystal Structure Of The Tartronic Semialdehyde Reductase
From Salmonella Typhimurium Lt2
Length = 295
Score = 117 bits (292), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 79/262 (30%), Positives = 125/262 (47%), Gaps = 23/262 (8%)
Query: 5 MGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQ 64
+G ET +V E +D++ +P + V DV G +G + S++ + ++D S+I P
Sbjct: 44 LGAVNVETARQVTEFADIIFIXVPDTPQVEDVLFGEHGCAK--TSLQGKTIVDXSSISPI 101
Query: 65 TSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPL 124
++ + V+ E + LDAPVSGG + A GTL+ VGG + + KPL
Sbjct: 102 ETKRFAQRVN-----EXGADY-----LDAPVSGGEIGAREGTLSIXVGGEQKVFDRVKPL 151
Query: 125 FLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNS-- 182
F +GKN GG G+G K+ N + +A+++ VSEAL G + + L
Sbjct: 152 FDILGKNITLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGADPVRVRQALXGGF 211
Query: 183 SSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQA 242
+S+R + +R + GF L KDLNLAL SAK + ++ P T+
Sbjct: 212 ASSRILEVHGERXI---------NRTFEPGFKIALHQKDLNLALQSAKALALNLPNTATC 262
Query: 243 QDIYAKLCENGHDSKDFSCVFQ 264
Q+++ NG D S Q
Sbjct: 263 QELFNTCAANGGSQLDHSAXVQ 284
>pdb|3PEF|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|B Chain B, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|C Chain C, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|D Chain D, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|E Chain E, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|F Chain F, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|G Chain G, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|H Chain H, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
Length = 287
Score = 116 bits (291), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/262 (31%), Positives = 121/262 (46%), Gaps = 19/262 (7%)
Query: 5 MGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQ 64
+G TP EV E+ V ML + +V G +G+L+G R +D ST+DP
Sbjct: 43 LGAERAATPXEVVESCPVTFAMLADPAAAEEVCFGKHGVLEGIGEGRG--YVDMSTVDPA 100
Query: 65 TSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPL 124
TS+ I AV + K + L+APVSG AE GTL + G + Y A P
Sbjct: 101 TSQRIGVAV---VAKGGR-------FLEAPVSGSKKPAEDGTLIILAAGDRNLYDEAMPG 150
Query: 125 FLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS 184
F MGK I+ G G GA K+ N+ M M E L LG+ G++ + ++ + +
Sbjct: 151 FEKMGKKIIHLGDVGKGAEMKLVVNMVMGGMMACFCEGLALGEKAGLATDAILDVIGAGA 210
Query: 185 ARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQD 244
NP+ + G+ RN+ F K M KDL LA+A VG ++ A +
Sbjct: 211 -------MANPMFALKGGLIRDRNFAPAFPLKHMQKDLRLAVALGDRVGQPLVASAAANE 263
Query: 245 IYAKLCENGHDSKDFSCVFQHY 266
++ G +DFS +F+ Y
Sbjct: 264 LFKGARAAGFGDEDFSAIFKTY 285
>pdb|1VPD|A Chain A, X-Ray Crystal Structure Of Tartronate Semialdehyde
Reductase [salmonella Typhimurium Lt2]
Length = 299
Score = 111 bits (278), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 86/262 (32%), Positives = 125/262 (47%), Gaps = 21/262 (8%)
Query: 6 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRP-QLLIDSSTIDPQ 64
G T T +AE DV+IT LP+S HV +V G NG+++G +P +LID S+I P
Sbjct: 48 GAETASTAKAIAEQCDVIITXLPNSPHVKEVALGENGIIEGA---KPGTVLIDXSSIAPL 104
Query: 65 TSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPL 124
SR IS A+ K E LDAPVSGG A GTL+ VGG + + L
Sbjct: 105 ASREISDAL-------KAKGVE---XLDAPVSGGEPKAIDGTLSVXVGGDKAIFDKYYDL 154
Query: 125 FLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS 184
+ + ++ G G G K+ N + +A+++ SEALTL G++ + + +
Sbjct: 155 XKAXAGSVVHTGDIGAGNVTKLANQVIVALNIAAXSEALTLATKAGVNPDLVYQAIRGGL 214
Query: 185 ARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQD 244
A D+ P RN+ GF L KDL AL ++ VG PLT+ +
Sbjct: 215 AGSTVLDAKAP-------XVXDRNFKPGFRIDLHIKDLANALDTSHGVGAQLPLTAAVXE 267
Query: 245 IYAKLCENGHDSKDFSCVFQHY 266
L +GH + D S + +Y
Sbjct: 268 XXQALRADGHGNDDHSALACYY 289
>pdb|1WP4|A Chain A, Structure Of Tt368 Protein From Thermus Thermophilus Hb8
pdb|1WP4|B Chain B, Structure Of Tt368 Protein From Thermus Thermophilus Hb8
pdb|1WP4|C Chain C, Structure Of Tt368 Protein From Thermus Thermophilus Hb8
pdb|1WP4|D Chain D, Structure Of Tt368 Protein From Thermus Thermophilus Hb8
Length = 289
Score = 106 bits (265), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 116/235 (49%), Gaps = 22/235 (9%)
Query: 12 TPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISA 71
P E + V+ T LP++ V +V L+ G +D+++ +P+ SR ++
Sbjct: 48 VPLERVAEARVIFTCLPTTREVYEVAEALYPYLREGT-----YWVDATSGEPEASRRLAE 102
Query: 72 AVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKN 131
L+EK ++ LDAPVSGG AEAGTLT M+GG E+A + +P FL+ K
Sbjct: 103 R-----LREKGVTY-----LDAPVSGGTSGAEAGTLTVMLGGPEEAVERVRP-FLAYAKK 151
Query: 132 TIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSD 191
++ G G G A K NN +AV++ E L G+SA +++N+SS R +++
Sbjct: 152 VVHVGPVGAGHAVKAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNATE 211
Query: 192 SYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIY 246
+ P + P + FA L+ KDL +A+ PL A+++Y
Sbjct: 212 NLIPQRVLTRAFPKT------FALGLLVKDLGIAMGVLDGEKAPSPLLRLAREVY 260
>pdb|3PDU|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|B Chain B, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|C Chain C, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|D Chain D, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|E Chain E, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|F Chain F, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|G Chain G, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|H Chain H, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
Length = 287
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/260 (29%), Positives = 119/260 (45%), Gaps = 19/260 (7%)
Query: 5 MGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQ 64
+G +P EV A D+ I ML + +V G NG+L+G R ID ST+D +
Sbjct: 43 LGARQASSPAEVCAACDITIAMLADPAAAREVCFGANGVLEGIGGGRG--YIDMSTVDDE 100
Query: 65 TSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPL 124
TS I AAV+ L+APVSG AE GTL + G + + A P
Sbjct: 101 TSTAIGAAVTA----------RGGRFLEAPVSGTKKPAEDGTLIILAAGDQSLFTDAGPA 150
Query: 125 FLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS 184
F ++GK ++ G G GA K+ N+ M M + E + LG++ G+ L ++L++ +
Sbjct: 151 FAALGKKCLHLGEVGQGARMKLVVNMIMGQMMTALGEGMALGRNCGLDGGQLLEVLDAGA 210
Query: 185 ARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQD 244
NP+ + S + F K M KDL LA+ +G + A +
Sbjct: 211 -------MANPMFKGKGQMLLSGEFPTSFPLKHMQKDLRLAVELGDRLGQPLHGAATANE 263
Query: 245 IYAKLCENGHDSKDFSCVFQ 264
+ + GH +DF+ VF+
Sbjct: 264 SFKRARAAGHADEDFAAVFR 283
>pdb|2CVZ|A Chain A, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2CVZ|B Chain B, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2CVZ|C Chain C, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2CVZ|D Chain D, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus
Thermophilus Hb8
Length = 289
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/235 (30%), Positives = 114/235 (48%), Gaps = 22/235 (9%)
Query: 12 TPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISA 71
P E + V+ T LP++ V +V L+ G +D+++ +P+ SR ++
Sbjct: 48 VPLERVAEARVIFTCLPTTREVYEVAEALYPYLREGT-----YWVDATSGEPEASRRLAE 102
Query: 72 AVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKN 131
L+EK ++ LDAPVSGG AEAGTLT +GG E+A + +P FL+ K
Sbjct: 103 R-----LREKGVTY-----LDAPVSGGTSGAEAGTLTVXLGGPEEAVERVRP-FLAYAKK 151
Query: 132 TIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSD 191
++ G G G A K NN +AV++ E L G+SA +++N+SS R +++
Sbjct: 152 VVHVGPVGAGHAVKAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNATE 211
Query: 192 SYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIY 246
+ P + P + FA L+ KDL +A PL A+++Y
Sbjct: 212 NLIPQRVLTRAFPKT------FALGLLVKDLGIAXGVLDGEKAPSPLLRLAREVY 260
>pdb|2UYY|A Chain A, Structure Of The Cytokine-Like Nuclear Factor N-Pac
pdb|2UYY|B Chain B, Structure Of The Cytokine-Like Nuclear Factor N-Pac
pdb|2UYY|C Chain C, Structure Of The Cytokine-Like Nuclear Factor N-Pac
pdb|2UYY|D Chain D, Structure Of The Cytokine-Like Nuclear Factor N-Pac
Length = 316
Score = 95.1 bits (235), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 72/267 (26%), Positives = 110/267 (41%), Gaps = 21/267 (7%)
Query: 1 MFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRP-QLLIDSS 59
+F G TP EV D+ + D+ GP+G+LQG +RP + +D S
Sbjct: 68 LFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQG---IRPGKCYVDMS 124
Query: 60 TIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQ 119
T+D T ++ + + L+APVSG + G L + G Y+
Sbjct: 125 TVDADTVTELAQVIVS----------RGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYE 174
Query: 120 AAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKI 179
F +MGK + + G GN A + N+ M ++E LTL Q G S TL I
Sbjct: 175 DCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDI 234
Query: 180 LNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLT 239
LN D +++G N+ F K + KDL LA+A V P+
Sbjct: 235 LNQGQLASIFLD--QKCQNILQG-----NFKPDFYLKYIQKDLRLAIALGDAVNHPTPMA 287
Query: 240 SQAQDIYAKLCENGHDSKDFSCVFQHY 266
+ A ++Y + D S V++ Y
Sbjct: 288 AAANEVYKRAKALDQSDNDMSAVYRAY 314
>pdb|3DOJ|A Chain A, Structure Of Glyoxylate Reductase 1 From Arabidopsis
(Atglyr1)
Length = 310
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/257 (29%), Positives = 111/257 (43%), Gaps = 25/257 (9%)
Query: 11 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNIS 70
E+P EV + I ML L V G+L+ + ID ST+D +TS I+
Sbjct: 69 ESPAEVIKKCKYTIAMLSDPCAALSVVFDKGGVLE--QICEGKGYIDMSTVDAETSLKIN 126
Query: 71 AAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGK 130
A++ + ++ PVSG AE G L + G + ++ + P F +GK
Sbjct: 127 EAITG----------KGGRFVEGPVSGSKKPAEDGQLIILAAGDKALFEESIPAFDVLGK 176
Query: 131 NTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSS 190
+ Y G GNGA K+ N+ M M SE L L G+S+ TL IL+ +
Sbjct: 177 RSFYLGQVGNGAKMKLIVNMIMGSMMNAFSEGLVLADKSGLSSDTLLDILDLGAMT---- 232
Query: 191 DSYNPVPGVMEGVPASRN---YGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYA 247
NP + +G S N Y F K KD+ LALA E V P+ + A + +
Sbjct: 233 ---NP---MFKGKGPSMNKSSYPPAFPLKHQQKDMRLALALGDENAVSMPVAAAANEAFK 286
Query: 248 KLCENGHDSKDFSCVFQ 264
K G DFS V +
Sbjct: 287 KARSLGLGDLDFSAVIE 303
>pdb|4DLL|A Chain A, Crystal Structure Of A 2-Hydroxy-3-Oxopropionate Reductase
From Polaromonas Sp. Js666
pdb|4DLL|B Chain B, Crystal Structure Of A 2-Hydroxy-3-Oxopropionate Reductase
From Polaromonas Sp. Js666
Length = 320
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 115/263 (43%), Gaps = 29/263 (11%)
Query: 5 MGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQG-GNSVRP-QLLIDSSTID 62
+G E A +D+V++ L + + V DV QG + +P L +D ++I
Sbjct: 73 LGATIHEQARAAARDADIVVSXLENGAVVQDVL-----FAQGVAAAXKPGSLFLDXASIT 127
Query: 63 PQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAK 122
P+ +R+ +A + + LD PVSGG + AE GTL GG ++ +
Sbjct: 128 PREARDHAARLGALGIAH----------LDTPVSGGTVGAEQGTLVIXAGGKPADFERSL 177
Query: 123 PLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNS 182
PL G+ T + G G+G K+ N + +++ V+EAL G + + + +
Sbjct: 178 PLLKVFGRAT-HVGPHGSGQLTKLANQXIVGITIGAVAEALLFATKGGADXAKVKEAITG 236
Query: 183 SSA--RCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTS 240
A R V R++ + KD ALA+A+E+G D P+T
Sbjct: 237 GFADSRVLQLHGQRXV---------ERDFAPRARLSIQLKDXRNALATAQEIGFDAPITG 287
Query: 241 QAQDIYAKLCENGHDSKDFSCVF 263
+ +YA+ E+G D S +F
Sbjct: 288 LFEQLYAEGVEHGLTDLDQSGLF 310
>pdb|3G0O|A Chain A, Crystal Structure Of 3-Hydroxyisobutyrate Dehydrogenase
(Ygbj) From Salmonella Typhimurium
Length = 303
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 110/258 (42%), Gaps = 26/258 (10%)
Query: 15 EVAEASDVVITMLPSSSHVLDVYNGPNG---LLQGGNSVRPQLLIDSSTIDPQTSRNISA 71
E A D ++ ++ +++ V V G +G L + G++V SSTI ++ I+A
Sbjct: 60 EFAGVVDALVILVVNAAQVRQVLFGEDGVAHLXKPGSAVXV-----SSTISSADAQEIAA 114
Query: 72 AVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKN 131
A++ L LDAPVSGG + A G T GSE A+ KP+ ++ N
Sbjct: 115 ALTALNLN----------XLDAPVSGGAVKAAQGEXTVXASGSEAAFTRLKPVLDAVASN 164
Query: 132 TIYCGGA-GNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSS 190
G G+ KI + L V + +EA L GI ++ ++ W
Sbjct: 165 VYRISDTPGAGSTVKIIHQLLAGVHIAAAAEAXALAARAGIPLDVXYDVVTHAAGNSWXF 224
Query: 191 DSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLC 250
+ N V++G +Y A + KDL L +AK + PL S A + +
Sbjct: 225 E--NRXQHVVDG-----DYTPRSAVDIFVKDLGLVADTAKALRFPLPLASTALNXFTSAS 277
Query: 251 ENGHDSKDFSCVFQHYYG 268
G+ +D S V + + G
Sbjct: 278 NAGYGKEDDSAVIKIFSG 295
>pdb|3QHA|A Chain A, Crystal Structure Of A Putative Oxidoreductase From
Mycobacterium Avium 104
pdb|3QHA|B Chain B, Crystal Structure Of A Putative Oxidoreductase From
Mycobacterium Avium 104
Length = 296
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 71/156 (45%), Gaps = 1/156 (0%)
Query: 90 MLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNN 149
++DAPVSGG AA G L MVG + Y+ KP F I+ G G G K+ N
Sbjct: 126 IVDAPVSGGAAAAARGELATMVGADREVYERIKPAFKHWAAVVIHAGEPGAGTRMKLARN 185
Query: 150 LTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNY 209
+ S EA+ L ++ G+ L +++ + A + + + P + Y
Sbjct: 186 MLTFTSYAAACEAMKLAEAAGLDLQALGRVVRHTDALTGGPGAIMVRDNMKDLEPDNFLY 245
Query: 210 GGGFASK-LMAKDLNLALASAKEVGVDCPLTSQAQD 244
++ L KDL+LALA + V VD PL A +
Sbjct: 246 QPFLHTRGLGEKDLSLALALGEAVSVDLPLARLAYE 281
>pdb|2W8Z|A Chain A, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
pdb|2W8Z|B Chain B, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
Length = 470
Score = 34.3 bits (77), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 10/96 (10%)
Query: 95 VSGGVLAAEAGTL---TFMVGGSEDAYQAAKPLFLSMGKN------TIYCGGAGNGAAAK 145
+ GV E G L + M GG ++A++ +P+F ++ T Y G G G K
Sbjct: 124 IGTGVSGGEEGALKGPSIMPGGQKEAHELVRPIFEAIAAKVDGEPCTTYIGPDGAGHYVK 183
Query: 146 ICNNLTMAVSMLGVSEA-LTLGQSLGISASTLTKIL 180
+ +N M ++EA L LG+ A+ L ++
Sbjct: 184 MVHNGIEYGDMQLIAEAYFLLKHVLGMDAAELHEVF 219
>pdb|2W90|A Chain A, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
pdb|2W90|B Chain B, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
Length = 471
Score = 34.3 bits (77), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 10/96 (10%)
Query: 95 VSGGVLAAEAGTL---TFMVGGSEDAYQAAKPLFLSMGKN------TIYCGGAGNGAAAK 145
+ GV E G L + M GG ++A++ +P+F ++ T Y G G G K
Sbjct: 125 IGTGVSGGEEGALKGPSIMPGGQKEAHELVRPIFEAIAAKVDGEPCTTYIGPDGAGHYVK 184
Query: 146 ICNNLTMAVSMLGVSEA-LTLGQSLGISASTLTKIL 180
+ +N M ++EA L LG+ A+ L ++
Sbjct: 185 MVHNGIEYGDMQLIAEAYFLLKHVLGMDAAELHEVF 220
>pdb|1WP9|A Chain A, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|B Chain B, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|C Chain C, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|D Chain D, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|E Chain E, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|F Chain F, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
Length = 494
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 213 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHY 266
F+ K M K ++L L AKE+G+D P + ++I + + +SK VF +Y
Sbjct: 320 FSDKRMKKAISL-LVQAKEIGLDHPKMDKLKEIIREQLQRKQNSK--IIVFTNY 370
>pdb|2IZ0|A Chain A, Pex Inhibitor-Home Data
pdb|2IZ0|B Chain B, Pex Inhibitor-Home Data
pdb|2IZ0|C Chain C, Pex Inhibitor-Home Data
pdb|2IZ1|A Chain A, 6pdh Complexed With Pex Inhibitor Synchrotron Data
pdb|2IZ1|B Chain B, 6pdh Complexed With Pex Inhibitor Synchrotron Data
pdb|2IZ1|C Chain C, 6pdh Complexed With Pex Inhibitor Synchrotron Data
Length = 474
Score = 30.8 bits (68), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 77/184 (41%), Gaps = 29/184 (15%)
Query: 95 VSGGVLAAEAGTL---TFMVGGSEDAYQAAKPLFLSM-------GKNTI-YCGGAGNGAA 143
+ GV E G L + M GG ++AY P+F + GK + Y G G G
Sbjct: 125 IGTGVSGGEKGALLGPSMMPGGQKEAYDLVAPIFEQIAAKAPQDGKPCVAYMGANGAGHY 184
Query: 144 AKICNNLTMAVSMLGVSEALT-LGQSLGISASTLTKILNSSSARCWSS---DSYNPVPGV 199
K+ +N M ++E+ L + LG+S + + I W+ DSY +
Sbjct: 185 VKMVHNGIEYGDMQLIAESYDLLKRILGLSNAEIQAIFEE-----WNEGELDSY-LIEIT 238
Query: 200 MEGVPASRNYGGGF-ASKLMAKDLNLALA-----SAKEVGVDCPLTSQAQDIYAKLCENG 253
E + + G G+ K++ K N SA ++GV PL +++ ++A+
Sbjct: 239 KEVLKRKDDEGEGYIVDKILDKAGNKGTGKWTSESALDLGVPLPLITES--VFARYISTY 296
Query: 254 HDSK 257
D +
Sbjct: 297 KDER 300
>pdb|2IYP|A Chain A, Product Rup
pdb|2IYP|B Chain B, Product Rup
pdb|2IYP|C Chain C, Product Rup
Length = 473
Score = 30.8 bits (68), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 77/184 (41%), Gaps = 29/184 (15%)
Query: 95 VSGGVLAAEAGTL---TFMVGGSEDAYQAAKPLFLSM-------GKNTI-YCGGAGNGAA 143
+ GV E G L + M GG ++AY P+F + GK + Y G G G
Sbjct: 124 IGTGVSGGEKGALLGPSMMPGGQKEAYDLVAPIFEQIAAKAPQDGKPCVAYMGANGAGHY 183
Query: 144 AKICNNLTMAVSMLGVSEALT-LGQSLGISASTLTKILNSSSARCWSS---DSYNPVPGV 199
K+ +N M ++E+ L + LG+S + + I W+ DSY +
Sbjct: 184 VKMVHNGIEYGDMQLIAESYDLLKRILGLSNAEIQAIFEE-----WNEGELDSY-LIEIT 237
Query: 200 MEGVPASRNYGGGF-ASKLMAKDLNLALA-----SAKEVGVDCPLTSQAQDIYAKLCENG 253
E + + G G+ K++ K N SA ++GV PL +++ ++A+
Sbjct: 238 KEVLKRKDDEGEGYIVDKILDKAGNKGTGKWTSESALDLGVPLPLITES--VFARYISTY 295
Query: 254 HDSK 257
D +
Sbjct: 296 KDER 299
>pdb|2IYO|A Chain A, Structural Characterization Of A Bacterial 6pdh Reveals
Aspects Of Specificity, Mechanism And Mode Of Inhibition
Length = 472
Score = 30.8 bits (68), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 77/184 (41%), Gaps = 29/184 (15%)
Query: 95 VSGGVLAAEAGTL---TFMVGGSEDAYQAAKPLFLSM-------GKNTI-YCGGAGNGAA 143
+ GV E G L + M GG ++AY P+F + GK + Y G G G
Sbjct: 123 IGTGVSGGEKGALLGPSMMPGGQKEAYDLVAPIFEQIAAKAPQDGKPCVAYMGANGAGHY 182
Query: 144 AKICNNLTMAVSMLGVSEALT-LGQSLGISASTLTKILNSSSARCWSS---DSYNPVPGV 199
K+ +N M ++E+ L + LG+S + + I W+ DSY +
Sbjct: 183 VKMVHNGIEYGDMQLIAESYDLLKRILGLSNAEIQAIFEE-----WNEGELDSY-LIEIT 236
Query: 200 MEGVPASRNYGGGF-ASKLMAKDLNLALA-----SAKEVGVDCPLTSQAQDIYAKLCENG 253
E + + G G+ K++ K N SA ++GV PL +++ ++A+
Sbjct: 237 KEVLKRKDDEGEGYIVDKILDKAGNKGTGKWTSESALDLGVPLPLITES--VFARYISTY 294
Query: 254 HDSK 257
D +
Sbjct: 295 KDER 298
>pdb|2YYY|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase
pdb|2YYY|B Chain B, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase
Length = 343
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 1 MFSDMGVPTKETPFEVAEASDVVITMLPS---SSHVLDVY--NGPNGLLQGGNSVR 51
+F D G+P + T ++ E +D+V+ P ++ ++Y + +LQGG +
Sbjct: 63 LFEDAGIPVEGTILDIIEDADIVVDGAPKKIGKQNLENIYKPHKVKAILQGGEKAK 118
>pdb|2JNS|A Chain A, Solution Structure Of The Bromodomain-Containing Protein
4 Et Domain
Length = 90
Score = 27.7 bits (60), Expect = 7.9, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 48 NSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKK 82
NS ++ ID T+ P T R + V++C+ K++K
Sbjct: 54 NSNPDEIEIDFETLKPSTLRELERYVTSCLRKKRK 88
>pdb|2P4Q|A Chain A, Crystal Structure Analysis Of Gnd1 In Saccharomyces
Cerevisiae
Length = 497
Score = 27.3 bits (59), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Query: 108 TFMVGGSEDAYQAAKPLFLSMGKNT------IYCGGAGNGAAAKICNNLTMAVSMLGVSE 161
+ M GGSE+A+ K +F S+ + + G AG G K+ +N M + E
Sbjct: 147 SLMPGGSEEAWPHIKNIFQSISAKSDGEPCCEWVGPAGAGHYVKMVHNGIEYGDMQLICE 206
Query: 162 ALTLGQSLG 170
A + + LG
Sbjct: 207 AYDIMKRLG 215
>pdb|1G6O|A Chain A, Crystal Structure Of The Helicobacter Pylori Atpase,
Hp0525, In Complex With Adp
pdb|1G6O|B Chain B, Crystal Structure Of The Helicobacter Pylori Atpase,
Hp0525, In Complex With Adp
pdb|1NLY|A Chain A, Crystal Structure Of The Traffic Atpase Of The
Helicobacter Pylori Type Iv Secretion System In Complex
With Atpgammas
pdb|1NLY|B Chain B, Crystal Structure Of The Traffic Atpase Of The
Helicobacter Pylori Type Iv Secretion System In Complex
With Atpgammas
pdb|1NLZ|A Chain A, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1NLZ|B Chain B, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1NLZ|C Chain C, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1NLZ|D Chain D, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1NLZ|E Chain E, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1NLZ|F Chain F, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1OPX|A Chain A, Crystal Structure Of The Traffic Atpase (Hp0525) Of The
Helicobacter Pylori Type Iv Secretion System Bound By
Sulfate
pdb|1OPX|B Chain B, Crystal Structure Of The Traffic Atpase (Hp0525) Of The
Helicobacter Pylori Type Iv Secretion System Bound By
Sulfate
Length = 330
Score = 27.3 bits (59), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 126 LSMGKNTIYCGGAGNGAAAKI 146
+++GKN I CGG G+G I
Sbjct: 168 IAIGKNVIVCGGTGSGKTTYI 188
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.130 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,280,952
Number of Sequences: 62578
Number of extensions: 325027
Number of successful extensions: 644
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 594
Number of HSP's gapped (non-prelim): 30
length of query: 273
length of database: 14,973,337
effective HSP length: 97
effective length of query: 176
effective length of database: 8,903,271
effective search space: 1566975696
effective search space used: 1566975696
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)