Query 024066
Match_columns 273
No_of_seqs 227 out of 1220
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 08:41:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024066.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024066hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2084 MmsB 3-hydroxyisobutyr 100.0 1.3E-60 2.9E-65 414.6 27.1 247 2-267 40-286 (286)
2 KOG0409 Predicted dehydrogenas 100.0 8.4E-57 1.8E-61 384.3 26.6 254 1-272 73-326 (327)
3 PRK15059 tartronate semialdehy 100.0 4.9E-53 1.1E-57 374.3 28.9 248 3-269 39-286 (292)
4 TIGR01692 HIBADH 3-hydroxyisob 100.0 7.1E-51 1.5E-55 360.5 29.1 253 2-266 35-287 (288)
5 PRK15461 NADH-dependent gamma- 100.0 1.3E-49 2.7E-54 353.6 29.1 248 3-268 41-288 (296)
6 PLN02858 fructose-bisphosphate 100.0 6.2E-48 1.3E-52 396.0 27.4 250 2-268 43-293 (1378)
7 PLN02858 fructose-bisphosphate 100.0 1.4E-45 2.9E-50 378.8 28.2 250 2-268 363-613 (1378)
8 TIGR01505 tartro_sem_red 2-hyd 100.0 1.7E-44 3.6E-49 320.3 28.8 248 3-269 39-286 (291)
9 PRK11559 garR tartronate semia 100.0 1.8E-44 3.9E-49 320.8 28.0 247 3-268 42-288 (296)
10 PRK12490 6-phosphogluconate de 100.0 5.3E-41 1.1E-45 298.8 19.8 240 3-267 40-292 (299)
11 PLN02350 phosphogluconate dehy 100.0 8.1E-40 1.8E-44 305.4 22.5 223 6-251 53-299 (493)
12 PRK09599 6-phosphogluconate de 100.0 4.4E-38 9.5E-43 280.3 19.7 239 2-266 39-292 (301)
13 PRK09287 6-phosphogluconate de 100.0 3.5E-34 7.7E-39 266.3 21.5 215 6-243 38-273 (459)
14 TIGR00872 gnd_rel 6-phosphoglu 100.0 8.7E-32 1.9E-36 239.4 18.6 219 2-244 39-267 (298)
15 PTZ00142 6-phosphogluconate de 100.0 1.7E-30 3.7E-35 242.5 22.4 219 7-248 51-290 (470)
16 TIGR00873 gnd 6-phosphoglucona 100.0 2.2E-30 4.8E-35 241.8 20.6 218 7-247 48-285 (467)
17 TIGR03026 NDP-sugDHase nucleot 100.0 1.4E-28 3E-33 228.1 16.7 212 7-249 64-296 (411)
18 PF03446 NAD_binding_2: NAD bi 99.9 5.7E-28 1.2E-32 196.7 9.2 123 2-137 40-163 (163)
19 PF14833 NAD_binding_11: NAD-b 99.9 4.5E-26 9.9E-31 176.8 10.2 122 139-266 1-122 (122)
20 PRK15182 Vi polysaccharide bio 99.9 1.2E-24 2.6E-29 201.7 15.8 213 6-248 63-292 (425)
21 COG1023 Gnd Predicted 6-phosph 99.9 9.5E-25 2.1E-29 181.6 12.9 225 2-251 39-276 (300)
22 PRK11064 wecC UDP-N-acetyl-D-m 99.9 4.5E-23 9.8E-28 191.1 19.0 215 4-247 63-293 (415)
23 PRK15057 UDP-glucose 6-dehydro 99.9 1.1E-21 2.3E-26 180.1 18.8 201 6-247 58-281 (388)
24 PRK14618 NAD(P)H-dependent gly 99.9 7E-22 1.5E-26 178.2 10.6 235 7-270 62-324 (328)
25 PRK14619 NAD(P)H-dependent gly 99.8 8.3E-21 1.8E-25 169.8 12.2 223 11-270 39-302 (308)
26 PRK06129 3-hydroxyacyl-CoA deh 99.8 1.6E-19 3.5E-24 161.5 16.7 221 8-264 71-294 (308)
27 PRK00094 gpsA NAD(P)H-dependen 99.8 7.9E-20 1.7E-24 164.3 13.1 239 6-268 58-324 (325)
28 PRK12557 H(2)-dependent methyl 99.8 5E-19 1.1E-23 159.6 15.8 163 3-181 65-237 (342)
29 COG0362 Gnd 6-phosphogluconate 99.7 7E-17 1.5E-21 143.5 10.7 219 7-248 52-291 (473)
30 PLN02353 probable UDP-glucose 99.7 2.1E-15 4.6E-20 141.4 20.5 211 7-244 66-301 (473)
31 COG1004 Ugd Predicted UDP-gluc 99.7 3.5E-15 7.7E-20 133.6 16.8 213 7-247 64-292 (414)
32 KOG2653 6-phosphogluconate deh 99.6 3.2E-15 6.9E-20 131.1 10.1 218 7-250 55-296 (487)
33 PRK07531 bifunctional 3-hydrox 99.6 1.3E-14 2.8E-19 137.6 15.1 155 7-189 68-226 (495)
34 COG0677 WecC UDP-N-acetyl-D-ma 99.6 7.5E-15 1.6E-19 131.1 12.2 220 4-238 69-303 (436)
35 PRK08229 2-dehydropantoate 2-r 99.5 3.7E-14 8.1E-19 128.5 11.5 215 10-257 65-324 (341)
36 PLN02688 pyrroline-5-carboxyla 99.5 4.9E-13 1.1E-17 117.1 12.7 206 3-253 45-264 (266)
37 PRK07679 pyrroline-5-carboxyla 99.5 4E-13 8.7E-18 118.6 11.3 201 5-253 51-269 (279)
38 PRK08268 3-hydroxy-acyl-CoA de 99.4 3.1E-12 6.8E-17 121.5 12.4 147 7-185 75-227 (507)
39 PRK09260 3-hydroxybutyryl-CoA 99.3 1.5E-11 3.3E-16 109.0 12.5 147 7-183 69-220 (288)
40 PRK08269 3-hydroxybutyryl-CoA 99.3 9E-12 2E-16 111.6 10.6 141 13-185 73-220 (314)
41 TIGR02279 PaaC-3OHAcCoADH 3-hy 99.3 1.2E-11 2.6E-16 117.3 11.8 146 7-185 73-225 (503)
42 PRK08507 prephenate dehydrogen 99.3 6.7E-10 1.5E-14 97.8 20.4 153 4-182 43-208 (275)
43 PRK11199 tyrA bifunctional cho 99.3 3.1E-10 6.8E-15 104.1 17.3 144 11-178 134-279 (374)
44 TIGR01724 hmd_rel H2-forming N 99.1 1.9E-09 4.2E-14 94.9 13.7 118 2-135 64-192 (341)
45 PRK08655 prephenate dehydrogen 99.1 4E-09 8.7E-14 98.7 15.8 154 5-179 44-201 (437)
46 PRK06130 3-hydroxybutyryl-CoA 99.0 3.6E-09 7.7E-14 94.8 12.9 149 8-185 68-221 (311)
47 PRK07417 arogenate dehydrogena 99.0 3.3E-08 7.1E-13 87.3 16.7 128 12-159 50-189 (279)
48 PLN02545 3-hydroxybutyryl-CoA 99.0 7.4E-09 1.6E-13 92.1 12.0 145 9-183 73-222 (295)
49 PF00984 UDPG_MGDP_dh: UDP-glu 98.8 8.5E-08 1.8E-12 70.8 11.2 93 139-247 2-94 (96)
50 PRK07530 3-hydroxybutyryl-CoA 98.8 6.2E-08 1.3E-12 86.1 11.5 147 7-181 72-220 (292)
51 PRK06476 pyrroline-5-carboxyla 98.8 1.6E-07 3.4E-12 82.0 13.1 144 6-183 48-196 (258)
52 KOG2666 UDP-glucose/GDP-mannos 98.7 1.7E-06 3.6E-11 75.9 15.9 197 10-235 69-290 (481)
53 PRK07819 3-hydroxybutyryl-CoA 98.6 4.4E-07 9.6E-12 80.4 11.1 147 9-183 75-225 (286)
54 PRK07502 cyclohexadienyl dehyd 98.5 2.9E-05 6.3E-10 69.5 20.6 124 9-149 56-191 (307)
55 PRK07680 late competence prote 98.5 3.3E-06 7.1E-11 74.3 14.1 153 6-183 49-205 (273)
56 PRK06035 3-hydroxyacyl-CoA deh 98.5 5.6E-07 1.2E-11 79.9 9.0 147 10-183 77-224 (291)
57 PRK06545 prephenate dehydrogen 98.5 3.6E-06 7.9E-11 77.0 14.5 147 10-180 51-210 (359)
58 PRK11880 pyrroline-5-carboxyla 98.3 2.7E-05 5.9E-10 68.1 15.1 209 6-253 49-265 (267)
59 PRK12439 NAD(P)H-dependent gly 98.1 7.4E-05 1.6E-09 67.9 14.0 234 8-270 66-331 (341)
60 PRK05808 3-hydroxybutyryl-CoA 98.0 7.5E-05 1.6E-09 65.9 11.0 146 8-181 72-219 (282)
61 PRK07066 3-hydroxybutyryl-CoA 98.0 0.0011 2.5E-08 59.6 18.3 150 8-186 72-226 (321)
62 PF03721 UDPG_MGDP_dh_N: UDP-g 98.0 2.8E-05 6.1E-10 64.5 7.3 107 8-123 65-184 (185)
63 PRK12921 2-dehydropantoate 2-r 98.0 0.00046 1E-08 61.4 15.7 215 10-249 59-300 (305)
64 TIGR00112 proC pyrroline-5-car 97.9 0.00046 1E-08 59.8 15.1 156 5-184 29-188 (245)
65 PRK08293 3-hydroxybutyryl-CoA 97.9 0.00018 4E-09 63.7 12.0 149 6-184 71-225 (287)
66 PLN02712 arogenate dehydrogena 97.9 0.00024 5.1E-09 70.1 13.6 116 4-137 409-537 (667)
67 PTZ00431 pyrroline carboxylate 97.7 0.0019 4.1E-08 56.4 15.4 209 6-252 44-259 (260)
68 PRK12491 pyrroline-5-carboxyla 97.7 0.0014 3E-08 57.8 14.5 210 5-252 49-266 (272)
69 PRK14620 NAD(P)H-dependent gly 97.7 0.0017 3.6E-08 58.6 14.8 228 9-266 60-324 (326)
70 PRK14806 bifunctional cyclohex 97.6 0.00053 1.2E-08 68.6 11.0 142 5-163 47-202 (735)
71 PRK07634 pyrroline-5-carboxyla 97.6 0.0052 1.1E-07 52.8 15.5 151 6-183 53-209 (245)
72 PTZ00345 glycerol-3-phosphate 97.5 0.0055 1.2E-07 56.1 16.2 238 7-269 81-356 (365)
73 PF02153 PDH: Prephenate dehyd 97.4 0.0023 5E-08 55.8 11.9 107 14-137 40-158 (258)
74 PF00393 6PGD: 6-phosphoglucon 97.4 0.00046 1E-08 60.7 7.4 102 141-249 1-113 (291)
75 COG0240 GpsA Glycerol-3-phosph 97.3 0.013 2.8E-07 52.5 15.4 233 6-270 58-325 (329)
76 TIGR03376 glycerol3P_DH glycer 97.3 0.011 2.4E-07 53.7 14.5 155 7-177 70-253 (342)
77 PLN02256 arogenate dehydrogena 97.2 0.0079 1.7E-07 53.8 13.1 115 5-137 77-204 (304)
78 PRK09287 6-phosphogluconate de 97.1 0.0025 5.3E-08 60.2 8.9 135 115-252 271-423 (459)
79 COG0345 ProC Pyrroline-5-carbo 97.1 0.054 1.2E-06 47.4 16.4 211 5-253 48-264 (266)
80 PRK06928 pyrroline-5-carboxyla 97.1 0.012 2.7E-07 51.8 12.7 150 7-183 52-208 (277)
81 PRK06522 2-dehydropantoate 2-r 97.0 0.015 3.2E-07 51.6 12.9 214 10-251 58-299 (304)
82 PRK05479 ketol-acid reductoiso 97.0 0.015 3.2E-07 52.5 12.7 151 5-175 60-223 (330)
83 TIGR00873 gnd 6-phosphoglucona 97.0 0.0037 8E-08 59.2 9.2 135 115-252 278-431 (467)
84 PRK08818 prephenate dehydrogen 96.9 0.027 5.9E-07 51.7 13.1 121 10-147 42-165 (370)
85 PRK06249 2-dehydropantoate 2-r 96.7 0.04 8.6E-07 49.4 13.1 203 15-250 68-309 (313)
86 TIGR00745 apbA_panE 2-dehydrop 96.7 0.032 6.8E-07 49.1 12.3 213 10-249 51-290 (293)
87 PLN02712 arogenate dehydrogena 96.7 0.014 3E-07 57.8 10.7 117 4-137 92-220 (667)
88 cd01065 NAD_bind_Shikimate_DH 96.7 0.00078 1.7E-08 53.7 1.4 60 9-76 71-131 (155)
89 PRK06436 glycerate dehydrogena 96.5 0.0036 7.7E-08 56.0 4.7 62 10-75 164-225 (303)
90 PRK07574 formate dehydrogenase 96.5 0.0061 1.3E-07 56.2 6.1 67 5-75 234-300 (385)
91 PTZ00142 6-phosphogluconate de 96.5 0.023 4.9E-07 53.9 10.1 134 115-251 282-436 (470)
92 PLN03139 formate dehydrogenase 96.4 0.007 1.5E-07 55.8 6.3 67 5-75 241-307 (386)
93 COG2085 Predicted dinucleotide 96.4 0.0093 2E-07 50.0 6.4 123 10-146 51-189 (211)
94 TIGR01915 npdG NADPH-dependent 96.3 0.021 4.5E-07 48.5 7.8 122 11-146 60-198 (219)
95 COG0287 TyrA Prephenate dehydr 96.2 0.15 3.2E-06 45.0 13.0 107 14-137 59-171 (279)
96 PRK08605 D-lactate dehydrogena 96.1 0.0088 1.9E-07 54.2 4.8 66 6-75 187-252 (332)
97 COG4007 Predicted dehydrogenas 95.9 0.19 4.1E-06 43.5 11.6 155 2-173 65-231 (340)
98 PRK14194 bifunctional 5,10-met 95.8 0.01 2.3E-07 52.7 3.9 42 10-62 193-234 (301)
99 PRK13243 glyoxylate reductase; 95.8 0.013 2.8E-07 53.2 4.5 62 10-75 195-256 (333)
100 TIGR01327 PGDH D-3-phosphoglyc 94.8 0.028 6.1E-07 54.1 3.9 68 5-76 179-246 (525)
101 TIGR01723 hmd_TIGR 5,10-methen 94.4 1.7 3.7E-05 38.2 13.2 114 4-135 124-239 (340)
102 TIGR00465 ilvC ketol-acid redu 94.2 0.69 1.5E-05 41.6 11.1 108 4-131 45-161 (314)
103 PRK13581 D-3-phosphoglycerate 94.1 0.048 1E-06 52.6 3.5 66 5-75 181-246 (526)
104 COG1893 ApbA Ketopantoate redu 94.1 2 4.4E-05 38.5 13.7 212 13-252 61-302 (307)
105 PRK14188 bifunctional 5,10-met 94.0 0.079 1.7E-06 47.1 4.6 40 12-62 194-233 (296)
106 PRK00961 H(2)-dependent methyl 94.0 2.2 4.8E-05 37.5 13.0 114 4-135 126-241 (342)
107 PF10727 Rossmann-like: Rossma 93.8 0.05 1.1E-06 42.2 2.6 58 6-67 55-112 (127)
108 smart00859 Semialdhyde_dh Semi 93.8 0.069 1.5E-06 40.8 3.3 40 18-63 64-103 (122)
109 PF03807 F420_oxidored: NADP o 93.6 0.028 6.2E-07 40.8 0.9 49 5-60 46-95 (96)
110 PRK15469 ghrA bifunctional gly 93.5 0.13 2.7E-06 46.3 5.0 61 11-75 182-242 (312)
111 PRK12480 D-lactate dehydrogena 93.3 0.15 3.3E-06 46.1 5.3 64 8-75 187-250 (330)
112 PRK14179 bifunctional 5,10-met 93.1 0.11 2.5E-06 45.8 4.0 42 10-62 192-233 (284)
113 TIGR02440 FadJ fatty oxidation 92.6 1.2 2.6E-05 44.6 10.8 140 8-180 374-519 (699)
114 PRK13403 ketol-acid reductoiso 92.3 0.14 3E-06 46.1 3.4 46 5-56 58-103 (335)
115 PRK11154 fadJ multifunctional 92.2 1.4 3.1E-05 44.1 10.7 140 9-181 380-525 (708)
116 PRK11790 D-3-phosphoglycerate 91.7 0.27 5.8E-06 45.9 4.8 66 6-75 190-255 (409)
117 PRK11730 fadB multifunctional 91.7 2.3 5.1E-05 42.6 11.7 143 8-183 382-530 (715)
118 PRK06141 ornithine cyclodeamin 91.2 0.091 2E-06 47.2 1.1 58 7-75 177-234 (314)
119 PRK05708 2-dehydropantoate 2-r 90.7 4.2 9.2E-05 36.2 11.4 134 109-254 147-302 (305)
120 TIGR02437 FadB fatty oxidation 90.3 3.4 7.3E-05 41.5 11.2 144 8-184 382-531 (714)
121 PLN02928 oxidoreductase family 90.1 0.46 9.9E-06 43.3 4.6 62 10-75 217-278 (347)
122 PRK13302 putative L-aspartate 89.9 0.78 1.7E-05 40.3 5.8 60 8-76 56-115 (271)
123 TIGR02441 fa_ox_alpha_mit fatt 89.9 2.2 4.7E-05 43.0 9.6 140 8-180 404-549 (737)
124 PRK15409 bifunctional glyoxyla 89.7 0.49 1.1E-05 42.7 4.5 65 6-75 188-252 (323)
125 PRK00257 erythronate-4-phospha 89.1 0.49 1.1E-05 43.7 4.1 63 9-75 157-223 (381)
126 COG1250 FadB 3-hydroxyacyl-CoA 89.1 14 0.0003 33.2 13.1 143 10-185 74-223 (307)
127 PF10728 DUF2520: Domain of un 88.9 7.5 0.00016 30.2 10.0 71 108-182 3-80 (132)
128 PRK06444 prephenate dehydrogen 88.9 5.9 0.00013 33.1 10.0 89 17-138 29-122 (197)
129 PF02826 2-Hacid_dh_C: D-isome 88.5 0.24 5.2E-06 40.6 1.4 62 10-75 82-143 (178)
130 PF00393 6PGD: 6-phosphoglucon 88.2 1.5 3.2E-05 38.9 6.3 113 137-252 135-258 (291)
131 COG0111 SerA Phosphoglycerate 87.8 0.71 1.5E-05 41.7 4.2 67 5-75 183-249 (324)
132 PLN02350 phosphogluconate dehy 87.8 3 6.4E-05 40.0 8.5 109 140-251 326-445 (493)
133 PRK13304 L-aspartate dehydroge 87.5 1.5 3.3E-05 38.3 6.0 62 6-76 48-112 (265)
134 PRK06932 glycerate dehydrogena 86.8 0.87 1.9E-05 40.9 4.1 62 10-75 188-249 (314)
135 COG4408 Uncharacterized protei 86.7 13 0.00029 33.5 11.2 208 19-252 137-397 (431)
136 PF10100 DUF2338: Uncharacteri 86.2 10 0.00023 35.1 10.7 177 51-251 167-394 (429)
137 COG1052 LdhA Lactate dehydroge 85.8 1.3 2.7E-05 40.1 4.7 65 6-75 188-252 (324)
138 PRK08410 2-hydroxyacid dehydro 85.4 0.91 2E-05 40.7 3.5 62 10-75 187-248 (311)
139 PLN02306 hydroxypyruvate reduc 85.1 1.5 3.3E-05 40.6 4.9 62 10-75 227-288 (386)
140 PRK06487 glycerate dehydrogena 84.6 1.2 2.6E-05 40.1 4.0 61 11-75 189-249 (317)
141 KOG0069 Glyoxylate/hydroxypyru 84.1 1.8 3.8E-05 39.2 4.7 62 10-75 208-269 (336)
142 COG0002 ArgC Acetylglutamate s 83.7 1.4 3E-05 39.9 3.9 122 12-149 62-196 (349)
143 PF01210 NAD_Gly3P_dh_N: NAD-d 83.3 0.97 2.1E-05 36.1 2.5 63 7-75 57-120 (157)
144 PF02737 3HCDH_N: 3-hydroxyacy 82.5 1.3 2.9E-05 36.3 3.1 107 8-136 68-178 (180)
145 PRK11861 bifunctional prephena 81.0 28 0.00062 34.7 12.4 113 23-151 1-125 (673)
146 TIGR00507 aroE shikimate 5-deh 80.0 0.83 1.8E-05 40.0 1.1 50 18-75 177-228 (270)
147 PF01408 GFO_IDH_MocA: Oxidore 79.4 6.7 0.00014 29.2 5.9 64 5-76 46-112 (120)
148 cd05212 NAD_bind_m-THF_DH_Cycl 78.8 2.6 5.6E-05 33.2 3.4 40 12-62 64-103 (140)
149 PF07991 IlvN: Acetohydroxy ac 77.5 1.4 3E-05 35.7 1.5 46 5-56 47-92 (165)
150 COG0362 Gnd 6-phosphogluconate 77.1 12 0.00025 34.8 7.4 113 137-252 312-435 (473)
151 TIGR01921 DAP-DH diaminopimela 76.6 21 0.00046 32.3 9.0 108 6-150 47-164 (324)
152 PRK14169 bifunctional 5,10-met 75.7 4.7 0.0001 35.7 4.5 41 11-62 191-231 (282)
153 KOG2380 Prephenate dehydrogena 74.6 30 0.00066 31.6 9.3 165 5-188 93-271 (480)
154 TIGR03855 NAD_NadX aspartate d 74.5 11 0.00023 32.3 6.4 63 5-76 22-88 (229)
155 PF01118 Semialdhyde_dh: Semia 73.9 2.8 6.1E-05 31.8 2.4 40 14-62 61-100 (121)
156 PRK15438 erythronate-4-phospha 73.9 3.6 7.8E-05 38.0 3.5 62 10-75 158-223 (378)
157 TIGR01851 argC_other N-acetyl- 73.6 3.9 8.4E-05 36.7 3.5 41 12-61 42-82 (310)
158 TIGR00036 dapB dihydrodipicoli 73.5 16 0.00035 31.9 7.4 62 6-75 55-116 (266)
159 TIGR01850 argC N-acetyl-gamma- 72.9 4.5 9.8E-05 36.9 3.9 43 12-63 61-103 (346)
160 PRK14186 bifunctional 5,10-met 72.6 4.1 8.9E-05 36.3 3.4 41 11-62 193-233 (297)
161 TIGR02371 ala_DH_arch alanine 71.5 3 6.5E-05 37.6 2.4 56 7-73 180-235 (325)
162 PF02882 THF_DHG_CYH_C: Tetrah 70.1 5.7 0.00012 32.0 3.5 42 11-63 71-112 (160)
163 PRK14166 bifunctional 5,10-met 69.2 5.5 0.00012 35.2 3.4 40 11-61 192-231 (282)
164 PF09130 DUF1932: Domain of un 67.1 9.5 0.00021 26.2 3.7 72 166-250 1-72 (73)
165 PRK08306 dipicolinate synthase 67.0 6.1 0.00013 35.1 3.4 27 4-30 40-66 (296)
166 PRK11863 N-acetyl-gamma-glutam 66.2 6.4 0.00014 35.4 3.3 40 13-61 44-83 (313)
167 PRK08306 dipicolinate synthase 64.7 12 0.00025 33.3 4.7 51 5-64 194-246 (296)
168 cd01079 NAD_bind_m-THF_DH NAD 64.6 7 0.00015 32.6 3.0 39 13-62 120-159 (197)
169 PRK14176 bifunctional 5,10-met 64.3 12 0.00026 33.2 4.6 41 11-62 199-239 (287)
170 TIGR02853 spore_dpaA dipicolin 64.1 10 0.00022 33.6 4.2 47 12-67 202-248 (287)
171 PRK14189 bifunctional 5,10-met 63.3 10 0.00022 33.6 4.0 40 11-61 193-232 (285)
172 PRK14173 bifunctional 5,10-met 62.6 11 0.00024 33.4 4.1 41 11-62 190-230 (287)
173 PRK11579 putative oxidoreducta 60.0 34 0.00074 30.8 7.0 62 6-75 49-113 (346)
174 COG2423 Predicted ornithine cy 59.8 7.1 0.00015 35.4 2.4 58 7-75 183-240 (330)
175 PTZ00187 succinyl-CoA syntheta 59.7 33 0.00072 30.9 6.6 62 6-74 73-136 (317)
176 PRK14170 bifunctional 5,10-met 59.5 14 0.0003 32.7 4.1 41 11-62 192-232 (284)
177 PRK05678 succinyl-CoA syntheta 59.2 48 0.001 29.5 7.5 65 5-76 49-115 (291)
178 PRK14177 bifunctional 5,10-met 58.6 15 0.00033 32.5 4.2 41 11-62 194-234 (284)
179 TIGR01019 sucCoAalpha succinyl 57.8 56 0.0012 29.0 7.7 64 5-76 47-113 (286)
180 PF08546 ApbA_C: Ketopantoate 57.5 32 0.0007 25.8 5.5 85 152-248 37-123 (125)
181 PF01113 DapB_N: Dihydrodipico 57.4 38 0.00083 25.7 5.9 59 4-71 52-111 (124)
182 PRK14193 bifunctional 5,10-met 57.4 16 0.00034 32.4 4.1 41 11-62 195-235 (284)
183 PF05222 AlaDh_PNT_N: Alanine 57.0 15 0.00032 28.7 3.5 72 3-98 48-119 (136)
184 PRK14183 bifunctional 5,10-met 56.9 15 0.00033 32.4 4.0 41 11-62 192-232 (281)
185 PF04273 DUF442: Putative phos 56.3 83 0.0018 23.5 10.0 83 21-137 8-95 (110)
186 cd01075 NAD_bind_Leu_Phe_Val_D 55.9 23 0.00051 29.4 4.8 25 156-180 169-193 (200)
187 PRK14181 bifunctional 5,10-met 55.5 17 0.00037 32.2 4.0 40 11-61 192-231 (287)
188 PLN02516 methylenetetrahydrofo 55.3 17 0.00038 32.4 4.1 41 11-62 202-242 (299)
189 PRK14172 bifunctional 5,10-met 55.2 17 0.00037 32.1 4.0 40 11-61 193-232 (278)
190 PRK05225 ketol-acid reductoiso 55.0 15 0.00032 34.9 3.7 38 5-47 84-121 (487)
191 PRK14187 bifunctional 5,10-met 55.0 17 0.00037 32.3 4.0 40 11-61 195-234 (294)
192 PRK14180 bifunctional 5,10-met 54.9 17 0.00036 32.2 3.9 40 11-61 193-232 (282)
193 PRK00436 argC N-acetyl-gamma-g 54.8 14 0.00031 33.5 3.6 40 16-64 65-104 (343)
194 PRK14185 bifunctional 5,10-met 54.4 18 0.00039 32.2 4.0 41 11-62 196-236 (293)
195 PRK06823 ornithine cyclodeamin 53.8 10 0.00022 34.1 2.4 55 8-73 181-235 (315)
196 PRK10792 bifunctional 5,10-met 52.9 22 0.00048 31.5 4.3 40 11-61 194-233 (285)
197 PRK14171 bifunctional 5,10-met 52.4 21 0.00045 31.7 4.1 40 11-61 194-233 (288)
198 PLN02522 ATP citrate (pro-S)-l 52.2 61 0.0013 32.0 7.5 66 5-76 61-129 (608)
199 PLN02897 tetrahydrofolate dehy 52.2 20 0.00043 32.7 4.0 40 11-61 249-288 (345)
200 PRK14190 bifunctional 5,10-met 52.0 19 0.00041 31.9 3.7 40 11-61 193-232 (284)
201 PRK06407 ornithine cyclodeamin 51.9 9.3 0.0002 34.1 1.8 56 7-73 170-225 (301)
202 PRK00048 dihydrodipicolinate r 51.4 72 0.0016 27.6 7.3 57 7-71 48-104 (257)
203 PRK14168 bifunctional 5,10-met 50.9 24 0.00051 31.5 4.2 40 12-62 201-240 (297)
204 PRK13303 L-aspartate dehydroge 50.4 37 0.0008 29.6 5.3 81 6-104 48-131 (265)
205 PRK14182 bifunctional 5,10-met 50.2 23 0.00049 31.4 3.9 40 11-61 192-231 (282)
206 PRK10265 chaperone-modulator p 49.4 1E+02 0.0022 22.6 7.8 72 163-251 11-82 (101)
207 cd01080 NAD_bind_m-THF_DH_Cycl 49.1 21 0.00044 29.0 3.3 21 11-31 79-99 (168)
208 TIGR01761 thiaz-red thiazoliny 48.7 1.2E+02 0.0025 27.7 8.4 63 5-76 48-114 (343)
209 PLN02383 aspartate semialdehyd 48.2 22 0.00047 32.5 3.6 38 15-61 65-102 (344)
210 PRK14175 bifunctional 5,10-met 48.1 28 0.0006 30.9 4.2 38 12-60 194-231 (286)
211 PF02423 OCD_Mu_crystall: Orni 48.1 8.5 0.00018 34.5 1.0 58 7-73 180-237 (313)
212 PRK14167 bifunctional 5,10-met 48.0 27 0.00059 31.1 4.1 41 11-62 196-236 (297)
213 COG0059 IlvC Ketol-acid reduct 47.7 19 0.00041 32.2 3.0 31 6-38 62-92 (338)
214 PLN02616 tetrahydrofolate dehy 47.0 26 0.00057 32.1 3.9 40 11-61 266-305 (364)
215 PRK06199 ornithine cyclodeamin 45.0 13 0.00028 34.4 1.7 25 7-31 211-235 (379)
216 PF02317 Octopine_DH: NAD/NADP 44.4 65 0.0014 25.5 5.5 28 222-249 122-149 (152)
217 PRK14191 bifunctional 5,10-met 43.8 25 0.00055 31.2 3.2 39 12-61 193-231 (285)
218 PRK14184 bifunctional 5,10-met 43.3 26 0.00056 31.1 3.2 37 12-59 197-233 (286)
219 COG0074 SucD Succinyl-CoA synt 43.3 1.1E+02 0.0023 27.2 6.9 64 6-76 50-115 (293)
220 PRK14174 bifunctional 5,10-met 43.0 29 0.00062 31.0 3.5 39 12-61 199-237 (295)
221 PLN02968 Probable N-acetyl-gam 42.6 22 0.00047 32.9 2.8 37 17-63 102-138 (381)
222 PRK10206 putative oxidoreducta 42.5 99 0.0021 28.0 7.0 61 7-75 50-113 (344)
223 PRK07340 ornithine cyclodeamin 42.4 18 0.00039 32.3 2.1 53 10-74 179-231 (304)
224 PRK14178 bifunctional 5,10-met 42.3 27 0.00059 30.8 3.2 40 11-61 187-226 (279)
225 PRK08618 ornithine cyclodeamin 41.3 27 0.00059 31.4 3.2 46 9-65 182-227 (325)
226 PRK07589 ornithine cyclodeamin 41.2 17 0.00037 33.2 1.8 58 7-73 181-238 (346)
227 cd05213 NAD_bind_Glutamyl_tRNA 40.4 26 0.00056 31.3 2.9 20 13-32 232-251 (311)
228 PF11115 DUF2623: Protein of u 39.4 52 0.0011 23.8 3.6 28 156-183 51-78 (95)
229 PF03720 UDPG_MGDP_dh_C: UDP-g 38.8 17 0.00037 26.8 1.2 50 6-60 53-102 (106)
230 PLN00125 Succinyl-CoA ligase [ 37.9 1.1E+02 0.0024 27.3 6.4 33 5-38 53-87 (300)
231 COG4074 Mth H2-forming N5,N10- 35.3 43 0.00092 28.7 3.1 63 4-71 124-186 (343)
232 PF13591 MerR_2: MerR HTH fami 34.2 1.7E+02 0.0036 20.6 7.5 69 164-250 5-73 (84)
233 KOG3124 Pyrroline-5-carboxylat 34.2 55 0.0012 28.6 3.7 206 2-252 44-264 (267)
234 cd03319 L-Ala-DL-Glu_epimerase 33.7 3.3E+02 0.0073 24.0 9.0 73 53-135 179-257 (316)
235 PF02629 CoA_binding: CoA bind 33.6 45 0.00097 24.0 2.7 31 6-37 47-79 (96)
236 PF00382 TFIIB: Transcription 32.9 80 0.0017 21.2 3.8 29 226-254 2-30 (71)
237 cd03315 MLE_like Muconate lact 32.1 3.3E+02 0.0071 23.4 9.2 74 52-135 130-209 (265)
238 KOG2741 Dimeric dihydrodiol de 31.4 2.2E+02 0.0048 26.0 7.1 73 7-97 58-133 (351)
239 PF13380 CoA_binding_2: CoA bi 31.0 49 0.0011 24.8 2.7 52 5-63 41-92 (116)
240 PRK04452 acetyl-CoA decarbonyl 30.9 4E+02 0.0088 24.0 11.4 53 108-176 154-206 (319)
241 COG2716 GcvR Glycine cleavage 29.5 1.1E+02 0.0025 24.9 4.6 101 57-176 10-123 (176)
242 PRK01045 ispH 4-hydroxy-3-meth 29.4 64 0.0014 28.8 3.5 63 2-75 49-111 (298)
243 COG2247 LytB Putative cell wal 28.8 1.1E+02 0.0024 27.6 4.7 46 106-151 77-122 (337)
244 KOG2653 6-phosphogluconate deh 28.5 2.2E+02 0.0047 26.4 6.6 109 141-252 321-440 (487)
245 PRK06270 homoserine dehydrogen 27.7 4.6E+02 0.01 23.7 9.3 51 117-171 159-209 (341)
246 COG1799 Uncharacterized protei 26.8 1E+02 0.0023 25.0 3.9 48 19-74 73-120 (167)
247 PRK14874 aspartate-semialdehyd 26.7 76 0.0017 28.6 3.6 37 16-61 60-96 (334)
248 PLN02819 lysine-ketoglutarate 26.7 1.2E+02 0.0027 32.0 5.4 56 10-75 636-694 (1042)
249 PF03435 Saccharop_dh: Sacchar 26.5 83 0.0018 28.8 3.9 18 13-30 61-78 (386)
250 TIGR02717 AcCoA-syn-alpha acet 26.5 2.1E+02 0.0046 27.0 6.7 33 5-38 50-82 (447)
251 PRK10846 bifunctional folylpol 26.3 1.3E+02 0.0029 27.9 5.2 38 116-153 30-73 (416)
252 PF08671 SinI: Anti-repressor 25.6 1.3E+02 0.0028 17.0 3.0 21 161-181 7-27 (30)
253 cd03321 mandelate_racemase Man 25.5 5.1E+02 0.011 23.4 9.7 66 52-127 187-258 (355)
254 COG0673 MviM Predicted dehydro 25.3 2.3E+02 0.005 25.0 6.5 62 6-75 51-116 (342)
255 cd03325 D-galactonate_dehydrat 25.1 3.6E+02 0.0078 24.4 7.7 66 52-127 177-248 (352)
256 PRK06046 alanine dehydrogenase 25.0 61 0.0013 29.1 2.6 54 8-73 183-236 (326)
257 PRK05671 aspartate-semialdehyd 25.0 73 0.0016 28.9 3.1 37 17-62 64-100 (336)
258 TIGR02992 ectoine_eutC ectoine 24.8 46 0.001 29.9 1.8 22 10-31 185-206 (326)
259 PRK08040 putative semialdehyde 24.8 61 0.0013 29.4 2.6 35 18-61 65-99 (336)
260 TIGR01303 IMP_DH_rel_1 IMP deh 24.6 92 0.002 29.8 3.8 63 119-183 278-350 (475)
261 PRK06728 aspartate-semialdehyd 24.3 56 0.0012 29.9 2.2 38 16-62 65-102 (347)
262 TIGR02534 mucon_cyclo muconate 24.2 3E+02 0.0065 25.0 7.1 74 52-135 188-267 (368)
263 PRK09310 aroDE bifunctional 3- 23.9 64 0.0014 30.8 2.7 43 17-75 388-430 (477)
264 PF08765 Mor: Mor transcriptio 23.4 3.1E+02 0.0067 20.2 6.1 62 119-183 35-96 (108)
265 PF12637 TSCPD: TSCPD domain; 23.0 1.6E+02 0.0035 21.3 4.1 31 154-184 38-68 (95)
266 PF11113 Phage_head_chap: Head 22.9 97 0.0021 20.3 2.5 25 51-75 26-50 (56)
267 KOG3007 Mu-crystallin [Amino a 22.9 77 0.0017 28.0 2.6 66 7-93 195-260 (333)
268 COG0285 FolC Folylpolyglutamat 22.7 1.4E+02 0.003 28.2 4.5 35 118-152 27-67 (427)
269 PRK12360 4-hydroxy-3-methylbut 22.7 1.2E+02 0.0025 26.9 3.8 63 2-75 50-114 (281)
270 PRK09424 pntA NAD(P) transhydr 22.3 1.2E+02 0.0027 29.2 4.2 57 3-75 51-107 (509)
271 cd03329 MR_like_4 Mandelate ra 22.0 5E+02 0.011 23.6 8.1 71 53-133 191-268 (368)
272 COG4451 RbcS Ribulose bisphosp 22.0 1.9E+02 0.004 22.2 4.2 75 56-135 11-87 (127)
273 PF06434 Aconitase_2_N: Aconit 21.9 42 0.00092 27.9 0.9 36 118-154 43-79 (204)
274 TIGR00973 leuA_bact 2-isopropy 21.9 7.1E+02 0.015 23.9 9.4 102 60-171 19-131 (494)
275 PTZ00075 Adenosylhomocysteinas 21.7 1.2E+02 0.0026 29.1 3.9 49 6-63 297-345 (476)
276 TIGR01296 asd_B aspartate-semi 21.5 99 0.0021 28.1 3.3 38 15-61 57-94 (339)
277 PLN02913 dihydrofolate synthet 21.5 1.8E+02 0.0039 28.1 5.2 37 117-153 57-99 (510)
278 PRK14017 galactonate dehydrata 21.2 3.4E+02 0.0074 24.8 6.9 65 53-127 179-249 (382)
279 TIGR00936 ahcY adenosylhomocys 21.1 1.8E+02 0.0038 27.3 4.9 49 6-63 238-286 (406)
280 PRK14192 bifunctional 5,10-met 20.2 90 0.0019 27.6 2.6 18 13-30 196-213 (283)
281 COG0190 FolD 5,10-methylene-te 20.2 1.3E+02 0.0027 26.8 3.5 40 11-61 191-230 (283)
282 cd03322 rpsA The starvation se 20.1 6.6E+02 0.014 22.8 8.5 65 53-127 165-235 (361)
No 1
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=100.00 E-value=1.3e-60 Score=414.59 Aligned_cols=247 Identities=41% Similarity=0.655 Sum_probs=235.6
Q ss_pred cccCCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhc
Q 024066 2 FSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEK 81 (273)
Q Consensus 2 l~~~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~ 81 (273)
+.+.|++.+.||+|+++.+|+||+||+++++|++|+++++|+++++ ++|++||||||++|++++++++.++++
T Consensus 40 ~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g~~~~~--~~G~i~IDmSTisp~~a~~~a~~~~~~----- 112 (286)
T COG2084 40 LAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENGLLEGL--KPGAIVIDMSTISPETARELAAALAAK----- 112 (286)
T ss_pred HHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccchhhcC--CCCCEEEECCCCCHHHHHHHHHHHHhc-----
Confidence 3567999999999999999999999999999999999999999885 577999999999999999999999874
Q ss_pred cCCCCCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHH
Q 024066 82 KDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSE 161 (273)
Q Consensus 82 ~g~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~~~~~~~~~~E 161 (273)
|.+|+|+||+||+..+++|+|++|+||+++.|++++|+|+.++++++|+|+.|+|+.+||+||++..+++++++|
T Consensus 113 -----G~~~lDAPVsGg~~~A~~GtLtimvGG~~~~f~r~~pvl~~~g~~i~~~G~~G~G~~~Kl~nn~l~~~~~~a~aE 187 (286)
T COG2084 113 -----GLEFLDAPVSGGVPGAAAGTLTIMVGGDAEAFERAKPVLEAMGKNIVHVGPVGAGQAAKLANNILLAGNIAALAE 187 (286)
T ss_pred -----CCcEEecCccCCchhhhhCceEEEeCCCHHHHHHHHHHHHHhcCceEEECCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 389999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHH
Q 024066 162 ALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQ 241 (273)
Q Consensus 162 a~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~g~~~~~~~~ 241 (273)
++.++++.|+|++.+.+++++++++||+++.+.+ ++.+++|+|+|+++++.||++++++++++.|+++|+...
T Consensus 188 Al~la~k~Gld~~~~~~vi~~~~~~s~~~e~~~~-------~m~~~~~~p~F~v~~~~KDl~la~~~A~~~g~~lP~~~~ 260 (286)
T COG2084 188 ALALAEKAGLDPDVVLEVISGGAAGSWILENYGP-------RMLEGDFSPGFAVDLMLKDLGLALDAAKELGAPLPLTAL 260 (286)
T ss_pred HHHHHHHcCCCHHHHHHHHhccccCChHHHhhcc-------hhhcCCCCcchhHHHHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 9999999999999999999999999999987753 466889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCcHHHHHHHHh
Q 024066 242 AQDIYAKLCENGHDSKDFSCVFQHYY 267 (273)
Q Consensus 242 ~~~~~~~a~~~G~g~~d~sai~~~~~ 267 (273)
+.++|+.+.+.|+|++|++++++.++
T Consensus 261 ~~~ly~~~~~~G~g~~D~sal~~~l~ 286 (286)
T COG2084 261 AAELYAKAAAAGGGEEDFSALIKLLE 286 (286)
T ss_pred HHHHHHHHHhcCCCccChHHHHHHhC
Confidence 99999999999999999999999764
No 2
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=100.00 E-value=8.4e-57 Score=384.33 Aligned_cols=254 Identities=46% Similarity=0.708 Sum_probs=234.3
Q ss_pred CcccCCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhh
Q 024066 1 MFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKE 80 (273)
Q Consensus 1 ~l~~~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~ 80 (273)
+|+++|+++++||+|++++||+||+|||++.++++|+++..|++++. .+++..+||+||++|+++++|++.++.+
T Consensus 73 ~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g~~Gvl~g~-~~g~~~~vDmSTidp~~s~ei~~~i~~~---- 147 (327)
T KOG0409|consen 73 EFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVLLGKSGVLSGI-RPGKKATVDMSTIDPDTSLEIAKAISNK---- 147 (327)
T ss_pred HHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcCCCcceeec-cCCCceEEeccccCHHHHHHHHHHHHhC----
Confidence 36789999999999999999999999999999999999999999985 3444444999999999999999999864
Q ss_pred ccCCCCCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHH
Q 024066 81 KKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVS 160 (273)
Q Consensus 81 ~~g~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~~~~~~~~~~ 160 (273)
+.+|+|+||+||...|+.|+|+||+|||++.|+++.|+|+.++++++|+|..|+|+.+||+||+++++++.+++
T Consensus 148 ------~~~~vDAPVSGg~~~A~~G~LtimagGde~~~~~~~~~~~~mGk~~~~~G~~GnG~~~Kl~nnm~~g~~M~g~a 221 (327)
T KOG0409|consen 148 ------GGRFVDAPVSGGVKGAEEGTLTIMAGGDEALFEAASPVFKLMGKNVVFLGGVGNGQAAKLCNNMLLGSSMVGLA 221 (327)
T ss_pred ------CCeEEeccccCCchhhhcCeEEEEecCcHHHHHHHHHHHHHhcceEEEecccCchHHHHHHHHHHHHHHHHHHH
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHH
Q 024066 161 EALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTS 240 (273)
Q Consensus 161 Ea~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~g~~~~~~~ 240 (273)
|++.|+++.|+|+.+++|+++.+...||. .+.|.|.+ .+++|.|+|.++++.||++++++.+.+.+.|+|+..
T Consensus 222 Eal~la~r~GLd~~~l~eiln~G~~~S~~--~~~~~p~m-----~k~dy~p~f~~~~m~KDLgla~~~a~~~~~~~P~~s 294 (327)
T KOG0409|consen 222 EALALADRLGLDAKKLLEILNTGRCWSSM--FYNPVPGM-----LKGDYNPGFALKLMVKDLGLALNAAESVKVPMPLGS 294 (327)
T ss_pred HHHHHHHHcCCCHHHHHHHHhcCCcccHH--HhCcCchh-----hcCCCCCcchHHHHHHHHHHHHHhhhccCCCCchHH
Confidence 99999999999999999999996555554 55666654 468999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCcHHHHHHHHhcCCCC
Q 024066 241 QAQDIYAKLCENGHDSKDFSCVFQHYYGGKDE 272 (273)
Q Consensus 241 ~~~~~~~~a~~~G~g~~d~sai~~~~~~~~~~ 272 (273)
.+.|+|+...+.|||+.||+++++.+++.++.
T Consensus 295 lA~qly~~~~a~G~g~~Dfs~V~~~~~~~~~~ 326 (327)
T KOG0409|consen 295 LAHQLYKSMKALGYGDKDFSAVYRAFRRLNGI 326 (327)
T ss_pred HHHHHHHHHHhcCCCccccHHHHHHHHHhccC
Confidence 99999999999999999999999988876643
No 3
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=100.00 E-value=4.9e-53 Score=374.26 Aligned_cols=248 Identities=33% Similarity=0.508 Sum_probs=231.8
Q ss_pred ccCCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhcc
Q 024066 3 SDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKK 82 (273)
Q Consensus 3 ~~~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~ 82 (273)
.+.|++.++|+.|++++||+||+|||+++++++|+++++|+++.+ .+|++|||+||++|.++++++++++++
T Consensus 39 ~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~~~~--~~g~ivvd~sT~~p~~~~~~~~~~~~~------ 110 (292)
T PRK15059 39 LSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCTKAS--LKGKTIVDMSSISPIETKRFARQVNEL------ 110 (292)
T ss_pred HHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcchhccC--CCCCEEEECCCCCHHHHHHHHHHHHHc------
Confidence 456899999999999999999999999999999999888888763 467899999999999999999999874
Q ss_pred CCCCCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHH
Q 024066 83 DSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEA 162 (273)
Q Consensus 83 g~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~~~~~~~~~~Ea 162 (273)
|+.|+|+||+|++..+++|++++|+||++++|++++|+|+.|+++++|+|+.|+|+++||+||++...++++++|+
T Consensus 111 ----G~~~vdaPVsGg~~~a~~g~l~~~~gG~~~~~~~~~p~l~~~g~~~~~~G~~G~g~~~Kl~~N~l~~~~~~a~~Ea 186 (292)
T PRK15059 111 ----GGDYLDAPVSGGEIGAREGTLSIMVGGDEAVFERVKPLFELLGKNITLVGGNGDGQTCKVANQIIVALNIEAVSEA 186 (292)
T ss_pred ----CCCEEEecCCCCHHHHhcCcEEEEEcCCHHHHHHHHHHHHHHcCCcEEeCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHH
Q 024066 163 LTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQA 242 (273)
Q Consensus 163 ~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~g~~~~~~~~~ 242 (273)
+.+++++|||+++++++++.+.++||+++.+.+ ++.+++|+++|+++++.||++++++++++.|+++|+.+.+
T Consensus 187 ~~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~-------~~~~~~~~~~f~l~~~~KDl~l~~~~a~~~g~~~p~~~~~ 259 (292)
T PRK15059 187 LLFASKAGADPVRVRQALMGGFASSRILEVHGE-------RMIKRTFNPGFKIALHQKDLNLALQSAKALALNLPNTATC 259 (292)
T ss_pred HHHHHHcCCCHHHHHHHHHcCcccCHHHHhhch-------hhhcCCCCCCCchHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence 999999999999999999998888998776543 3567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHhcC
Q 024066 243 QDIYAKLCENGHDSKDFSCVFQHYYGG 269 (273)
Q Consensus 243 ~~~~~~a~~~G~g~~d~sai~~~~~~~ 269 (273)
+++|+.+.+.|+|++|++++++.+++.
T Consensus 260 ~~~~~~a~~~g~g~~D~sa~~~~~~~~ 286 (292)
T PRK15059 260 QELFNTCAANGGSQLDHSALVQALELM 286 (292)
T ss_pred HHHHHHHHhcCCCcCChHHHHHHHHHh
Confidence 999999999999999999999988653
No 4
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=100.00 E-value=7.1e-51 Score=360.50 Aligned_cols=253 Identities=49% Similarity=0.832 Sum_probs=233.9
Q ss_pred cccCCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhc
Q 024066 2 FSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEK 81 (273)
Q Consensus 2 l~~~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~ 81 (273)
+.+.|++.++|+.+++++||+||+|||++.++++++++++++.+.+ .++++|||+||++|++++++++.+.++
T Consensus 35 l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~--~~g~~vid~st~~p~~~~~~~~~~~~~----- 107 (288)
T TIGR01692 35 AVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKV--AKGSLLIDCSTIDPDSARKLAELAAAH----- 107 (288)
T ss_pred HHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcC--CCCCEEEECCCCCHHHHHHHHHHHHHc-----
Confidence 3456888899999999999999999999999999998877888764 467899999999999999999998764
Q ss_pred cCCCCCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHH
Q 024066 82 KDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSE 161 (273)
Q Consensus 82 ~g~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~~~~~~~~~~E 161 (273)
|+.|+|+||+|++..++.|++++|+||+++.+++++|+|+.++++++|+|++|+|+++||++|++..+++++++|
T Consensus 108 -----g~~~vdaPv~Gg~~~a~~g~l~~~~gg~~~~~~~~~~~l~~~g~~~~~~g~~g~g~~~Kl~~n~~~~~~~~~~~E 182 (288)
T TIGR01692 108 -----GAVFMDAPVSGGVGGARAGTLTFMVGGVAEEFAAAEPVLGPMGRNIVHCGDHGAGQAAKICNNMLLGISMIGTAE 182 (288)
T ss_pred -----CCcEEECCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhcCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHH
Q 024066 162 ALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQ 241 (273)
Q Consensus 162 a~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~g~~~~~~~~ 241 (273)
++.+++++|+|+++++++++.+.++||....+.+.++++...+.+++|+++|+++++.||++++.+++++.|+++|+.+.
T Consensus 183 a~~la~~~Gld~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KDl~~~~~~a~~~g~~~p~~~~ 262 (288)
T TIGR01692 183 AMALGEKLGLDPKVLFEIANTSSGRCWSSDTYNPVPGVMPQAPASNGYQGGFGTALMLKDLGLAQDAAKSAGAPTPLGAL 262 (288)
T ss_pred HHHHHHHcCCCHHHHHHHHhcCCccCcHHHHhCCCccccccccccCCCCCCcchHHHHhhHHHHHHHHHHcCCCChHHHH
Confidence 99999999999999999999999999987766665555544456789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCcHHHHHHHH
Q 024066 242 AQDIYAKLCENGHDSKDFSCVFQHY 266 (273)
Q Consensus 242 ~~~~~~~a~~~G~g~~d~sai~~~~ 266 (273)
++++|+.+.++|+|++|++++++.+
T Consensus 263 ~~~~~~~a~~~g~g~~d~~~~~~~~ 287 (288)
T TIGR01692 263 ARQLYSLFDDKGHGGKDFSSVIQLL 287 (288)
T ss_pred HHHHHHHHHhcCCCCCChHHHHHHh
Confidence 9999999999999999999999876
No 5
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=100.00 E-value=1.3e-49 Score=353.60 Aligned_cols=248 Identities=29% Similarity=0.428 Sum_probs=227.6
Q ss_pred ccCCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhcc
Q 024066 3 SDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKK 82 (273)
Q Consensus 3 ~~~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~ 82 (273)
.+.|++.+.|+.|++++||+||+|||++.++++++.+.+++++.+ +++++|||+||++|.+++++++++.++
T Consensus 41 ~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i~~~l--~~g~lvid~sT~~p~~~~~l~~~l~~~------ 112 (296)
T PRK15461 41 VDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGVCEGL--SRDALVIDMSTIHPLQTDKLIADMQAK------ 112 (296)
T ss_pred HHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccHhhcC--CCCCEEEECCCCCHHHHHHHHHHHHHc------
Confidence 456888899999999999999999999999999998877887763 467899999999999999999999864
Q ss_pred CCCCCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHH
Q 024066 83 DSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEA 162 (273)
Q Consensus 83 g~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~~~~~~~~~~Ea 162 (273)
|+.|+|+||+|++..++.|++++|+||++++|++++|+|+.|+++++|+|++|+|+++||++|++...++++++|+
T Consensus 113 ----g~~~ldapV~g~~~~a~~g~l~~~~gg~~~~~~~~~p~l~~~g~~~~~~g~~G~g~~~Kl~~N~~~~~~~~~~~Ea 188 (296)
T PRK15461 113 ----GFSMMDVPVGRTSDNAITGTLLLLAGGTAEQVERATPILMAMGNELINAGGPGMGIRVKLINNYMSIALNALSAEA 188 (296)
T ss_pred ----CCcEEEccCCCCHHHHHhCcEEEEECCCHHHHHHHHHHHHHHcCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHH
Q 024066 163 LTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQA 242 (273)
Q Consensus 163 ~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~g~~~~~~~~~ 242 (273)
+.+++++|||++.++++++.++..++.+..+. + +++.+++|+++|+++++.||++++++++++.|+++|+++.+
T Consensus 189 ~~l~~~~Gld~~~~~~~l~~~~~~~~~~~~~~--~----~~~~~~~~~~~f~~~~~~KD~~l~~~~a~~~g~~~p~~~~~ 262 (296)
T PRK15461 189 AVLCEALGLSFDVALKVMSGTAAGKGHFTTTW--P----NKVLKGDLSPAFMIDLAHKDLGIALDVANQLHVPMPLGAAS 262 (296)
T ss_pred HHHHHHcCCCHHHHHHHHhcCcccChHHHccc--c----chhccCCCCCCcchHHHHhhHHHHHHHHHHcCCCChHHHHH
Confidence 99999999999999999998876666544322 1 13567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHhc
Q 024066 243 QDIYAKLCENGHDSKDFSCVFQHYYG 268 (273)
Q Consensus 243 ~~~~~~a~~~G~g~~d~sai~~~~~~ 268 (273)
+++|+.+.++|+|++||+++++.+++
T Consensus 263 ~~~~~~a~~~g~g~~d~~~~~~~~~~ 288 (296)
T PRK15461 263 REVYSQARAAGRGRQDWSAILEQVRV 288 (296)
T ss_pred HHHHHHHHhcCCCCCChHHHHHHHHH
Confidence 99999999999999999999998865
No 6
>PLN02858 fructose-bisphosphate aldolase
Probab=100.00 E-value=6.2e-48 Score=396.00 Aligned_cols=250 Identities=21% Similarity=0.345 Sum_probs=233.0
Q ss_pred cccCCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhc
Q 024066 2 FSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEK 81 (273)
Q Consensus 2 l~~~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~ 81 (273)
|.+.|+++++||+|++++||+||+|||+++++++|+++.+|+++++ .+|++||||||++|++++++++.+.++|
T Consensus 43 l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~g~~~~l--~~g~iivd~STi~p~~~~~la~~l~~~g---- 116 (1378)
T PLN02858 43 FCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDEGAAKGL--QKGAVILIRSTILPLQLQKLEKKLTERK---- 116 (1378)
T ss_pred HHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchhhHHhcC--CCcCEEEECCCCCHHHHHHHHHHHHhcC----
Confidence 5678999999999999999999999999999999999988999874 4678999999999999999999998741
Q ss_pred cCCCCCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCCeEEe-CCcChHHHHHHHHHHHHHHHHHHHH
Q 024066 82 KDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYC-GGAGNGAAAKICNNLTMAVSMLGVS 160 (273)
Q Consensus 82 ~g~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~i~~~-G~~g~a~~~Kl~~n~~~~~~~~~~~ 160 (273)
+ ++.|+|+||+|++..|++|+|++|+||+++++++++|+|+.||++++|+ |++|+|+++||+||++.++++++++
T Consensus 117 -~---~~~~lDaPVsGg~~~A~~G~L~imvGG~~~~~~~~~p~l~~~g~~i~~~~G~~G~g~~~KL~nN~l~~~~~~a~a 192 (1378)
T PLN02858 117 -E---QIFLVDAYVSKGMSDLLNGKLMIIASGRSDAITRAQPFLSAMCQKLYTFEGEIGAGSKVKMVNELLEGIHLVASA 192 (1378)
T ss_pred -C---ceEEEEccCcCCHHHHhcCCeEEEEcCCHHHHHHHHHHHHHhcCceEEecCCCCHhHHHHHHHHHHHHHHHHHHH
Confidence 1 2789999999999999999999999999999999999999999999875 8899999999999999999999999
Q ss_pred HHHHHHHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHH
Q 024066 161 EALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTS 240 (273)
Q Consensus 161 Ea~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~g~~~~~~~ 240 (273)
|++.+++++|||++.++++|+.++++||+++.+.| ++.+++|+++|+++++.||+++++++|++.|+++|+++
T Consensus 193 EAl~la~~~Gld~~~l~~vl~~s~g~s~~~~~~~~-------~~~~~d~~~~F~l~l~~KDl~la~~~A~~~g~~lpl~~ 265 (1378)
T PLN02858 193 EAMALGVRAGIHPWIIYDIISNAAGSSWIFKNHVP-------LLLKDDYIEGRFLNVLVQNLGIVLDMAKSLPFPLPLLA 265 (1378)
T ss_pred HHHHHHHHcCCCHHHHHHHHhcCCccCHHHHhhhh-------HhhcCCCCCCchhHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 99999999999999999999999999998775543 35678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCcHHHHHHHHhc
Q 024066 241 QAQDIYAKLCENGHDSKDFSCVFQHYYG 268 (273)
Q Consensus 241 ~~~~~~~~a~~~G~g~~d~sai~~~~~~ 268 (273)
.++++|+.+.+.|+|++|++++++.+++
T Consensus 266 ~a~~~~~~a~~~G~g~~D~sav~~~~~~ 293 (1378)
T PLN02858 266 VAHQQLISGSSSMQGDDTATSLAKVWEK 293 (1378)
T ss_pred HHHHHHHHHHhcCCCccChHHHHHHHHH
Confidence 9999999999999999999999998865
No 7
>PLN02858 fructose-bisphosphate aldolase
Probab=100.00 E-value=1.4e-45 Score=378.76 Aligned_cols=250 Identities=25% Similarity=0.392 Sum_probs=230.7
Q ss_pred cccCCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhc
Q 024066 2 FSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEK 81 (273)
Q Consensus 2 l~~~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~ 81 (273)
|.+.|+..++|+++++++||+||+|||+++++++|+++..|+++.+ ..|++|||+||++|++++++++++++.|
T Consensus 363 l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g~~~~l--~~g~ivVd~STvsP~~~~~la~~l~~~g---- 436 (1378)
T PLN02858 363 FENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLGAVSAL--PAGASIVLSSTVSPGFVIQLERRLENEG---- 436 (1378)
T ss_pred HHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchhhHHhcC--CCCCEEEECCCCCHHHHHHHHHHHHhhC----
Confidence 4567888899999999999999999999999999999888888774 4678999999999999999999997621
Q ss_pred cCCCCCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCCeEEe-CCcChHHHHHHHHHHHHHHHHHHHH
Q 024066 82 KDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYC-GGAGNGAAAKICNNLTMAVSMLGVS 160 (273)
Q Consensus 82 ~g~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~i~~~-G~~g~a~~~Kl~~n~~~~~~~~~~~ 160 (273)
. |+.|+|+||+|+|..++.|++++|+||++++|++++|+|+.|+++++|+ |++|+|+++||+||++...++++++
T Consensus 437 ~----g~~~lDAPVsGg~~~A~~G~L~imvgG~~~~~~~~~plL~~lg~~i~~~~g~~G~a~~~KL~nN~l~~~~~aa~a 512 (1378)
T PLN02858 437 R----DIKLVDAPVSGGVKRAAMGTLTIMASGTDEALKSAGSVLSALSEKLYVIKGGCGAGSGVKMVNQLLAGVHIASAA 512 (1378)
T ss_pred C----CcEEEEccCCCChhhhhcCCceEEEECCHHHHHHHHHHHHHHhCcEEEeCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 1 4899999999999999999999999999999999999999999999886 5699999999999999999999999
Q ss_pred HHHHHHHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHH
Q 024066 161 EALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTS 240 (273)
Q Consensus 161 Ea~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~g~~~~~~~ 240 (273)
|++.+++++|||+++++++++.++++||+++.+.| ++.+++|+++|+++++.||++++++++++.|+++|+++
T Consensus 513 Eal~la~k~Gld~~~l~evl~~s~g~s~~~~~~~~-------~~l~~d~~~~f~l~l~~KDl~l~~~~a~~~g~~~pl~~ 585 (1378)
T PLN02858 513 EAMAFGARLGLNTRKLFDIISNAGGTSWMFENRVP-------HMLDNDYTPYSALDIFVKDLGIVSREGSSRKIPLHLST 585 (1378)
T ss_pred HHHHHHHHcCCCHHHHHHHHHhhcccChhhhhccc-------hhhcCCCCCCchhHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 99999999999999999999999999998765533 35578999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCcHHHHHHHHhc
Q 024066 241 QAQDIYAKLCENGHDSKDFSCVFQHYYG 268 (273)
Q Consensus 241 ~~~~~~~~a~~~G~g~~d~sai~~~~~~ 268 (273)
.++++|+.+.++|+|++|++++++.+++
T Consensus 586 ~~~~~~~~a~~~G~g~~D~sav~~~~~~ 613 (1378)
T PLN02858 586 VAHQLFLAGSASGWGRIDDAAVVKVYET 613 (1378)
T ss_pred HHHHHHHHHHhcCCCccChHHHHHHHHH
Confidence 9999999999999999999999998864
No 8
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=100.00 E-value=1.7e-44 Score=320.29 Aligned_cols=248 Identities=36% Similarity=0.535 Sum_probs=227.1
Q ss_pred ccCCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhcc
Q 024066 3 SDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKK 82 (273)
Q Consensus 3 ~~~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~ 82 (273)
.+.|+..++|+.+++++||+||+|||++.++++++++..++++.+ +++++|||+||++|.+++++.+.+.++
T Consensus 39 ~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~~~~--~~g~iivd~st~~~~~~~~l~~~l~~~------ 110 (291)
T TIGR01505 39 LAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGIIEGA--KPGKTLVDMSSISPIESKRFAKAVKEK------ 110 (291)
T ss_pred HHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHhhcC--CCCCEEEECCCCCHHHHHHHHHHHHHc------
Confidence 456888889999999999999999999999999987766676653 457899999999999999999998763
Q ss_pred CCCCCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHH
Q 024066 83 DSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEA 162 (273)
Q Consensus 83 g~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~~~~~~~~~~Ea 162 (273)
|++|+|+||+|++..+..|++.+|+||+++++++++++|+.++.+++|+|+.|.|+.+|+++|++...++.+++|+
T Consensus 111 ----g~~~~~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea 186 (291)
T TIGR01505 111 ----GIDYLDAPVSGGEIGAIEGTLSIMVGGDQAVFDRVKPLFEALGKNIVLVGGNGDGQTCKVANQIIVALNIEAVSEA 186 (291)
T ss_pred ----CCCEEecCCCCCHHHHhcCCEEEEecCCHHHHHHHHHHHHHhcCCeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHH
Q 024066 163 LTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQA 242 (273)
Q Consensus 163 ~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~g~~~~~~~~~ 242 (273)
+.+++++|+|++++.++++.+.++||.++.+.+ ++.+++|+++|+++++.||++++++++++.|+++|+++.+
T Consensus 187 ~~l~~~~Gid~~~~~~~l~~~~~~s~~~~~~~~-------~~~~~~~~~~f~~~~~~KDl~~~~~~a~~~g~~~~~~~~~ 259 (291)
T TIGR01505 187 LVFASKAGVDPVRVRQALRGGLAGSTVLEVKGE-------RVIDRTFKPGFRIDLHQKDLNLALDSAKAVGANLPNTATV 259 (291)
T ss_pred HHHHHHcCCCHHHHHHHHhcCcccCHHHHhhCh-------hhhcCCCCCCcchHHHHHHHHHHHHHHHHcCCCChhHHHH
Confidence 999999999999999999998888887665432 3457899999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHhcC
Q 024066 243 QDIYAKLCENGHDSKDFSCVFQHYYGG 269 (273)
Q Consensus 243 ~~~~~~a~~~G~g~~d~sai~~~~~~~ 269 (273)
+++|+.+.+.|+|++|++++++.+++.
T Consensus 260 ~~~~~~a~~~g~~~~d~~~~~~~~~~~ 286 (291)
T TIGR01505 260 QELFNTLRANGGGQLDHSALVQALELL 286 (291)
T ss_pred HHHHHHHHhcCCCccChHHHHHHHHHh
Confidence 999999999999999999999988653
No 9
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=100.00 E-value=1.8e-44 Score=320.79 Aligned_cols=247 Identities=34% Similarity=0.494 Sum_probs=226.8
Q ss_pred ccCCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhcc
Q 024066 3 SDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKK 82 (273)
Q Consensus 3 ~~~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~ 82 (273)
.+.|++.++++.|++++||+||+|+|++.++++++++.+++++.+ .++++|||+||++|.+++++++.+.++
T Consensus 42 ~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~~~~~--~~g~iiid~st~~~~~~~~l~~~~~~~------ 113 (296)
T PRK11559 42 IAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGIIEGA--KPGTVVIDMSSIAPLASREIAAALKAK------ 113 (296)
T ss_pred HHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchHhhcC--CCCcEEEECCCCCHHHHHHHHHHHHHc------
Confidence 346788889999999999999999999999999987766677663 467899999999999999999998763
Q ss_pred CCCCCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHH
Q 024066 83 DSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEA 162 (273)
Q Consensus 83 g~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~~~~~~~~~~Ea 162 (273)
|++|+|+||+|+++.+..|++.+|+||+++++++++++|+.++.+++|+|+.|+|+.+|+++|++..+++++++|+
T Consensus 114 ----g~~~~d~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea 189 (296)
T PRK11559 114 ----GIEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQVIVALNIAAMSEA 189 (296)
T ss_pred ----CCcEEEcCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhcCCeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHH
Q 024066 163 LTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQA 242 (273)
Q Consensus 163 ~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~g~~~~~~~~~ 242 (273)
+.++++.|++++++.+++..+.++|+.++.+.+ ++..++|+++|+++++.||++++++++++.|+++|+++.+
T Consensus 190 ~~l~~~~Gi~~~~~~~~l~~~~~~s~~~~~~~~-------~~~~~d~~~~f~~~~~~KDl~~~~~~a~~~g~~~p~~~~~ 262 (296)
T PRK11559 190 LVLATKAGVNPDLVYQAIRGGLAGSTVLDAKAP-------MVMDRNFKPGFRIDLHIKDLANALDTSHGVGAPLPLTAAV 262 (296)
T ss_pred HHHHHHcCCCHHHHHHHHhcCcccCHHHHhhch-------HhhcCCCCCCcchHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence 999999999999999999998888887765433 2456899999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHhc
Q 024066 243 QDIYAKLCENGHDSKDFSCVFQHYYG 268 (273)
Q Consensus 243 ~~~~~~a~~~G~g~~d~sai~~~~~~ 268 (273)
.++|+.+.+.|||++||+++++++++
T Consensus 263 ~~~~~~~~~~g~~~~d~~~~~~~~~~ 288 (296)
T PRK11559 263 MEMMQALKADGLGTADHSALACYYEK 288 (296)
T ss_pred HHHHHHHHhcCCCcCCcHHHHHHHHH
Confidence 99999999999999999999998865
No 10
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=100.00 E-value=5.3e-41 Score=298.79 Aligned_cols=240 Identities=18% Similarity=0.241 Sum_probs=212.4
Q ss_pred ccCCCCCCCCHHHHHhc---CCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhh
Q 024066 3 SDMGVPTKETPFEVAEA---SDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILK 79 (273)
Q Consensus 3 ~~~Ga~~~~s~~e~~~~---advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~ 79 (273)
.+.|++.++|+.|++++ +|+||+|||+++++++++. ++.+.+ .+|++|||+||++|.+++++++.+.++
T Consensus 40 ~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~~---~i~~~l--~~g~ivid~st~~~~~~~~~~~~~~~~--- 111 (299)
T PRK12490 40 GKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVIK---DLYPLL--SPGDIVVDGGNSRYKDDLRRAEELAER--- 111 (299)
T ss_pred HHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHHH---HHhccC--CCCCEEEECCCCCchhHHHHHHHHHHc---
Confidence 45688999999999887 6999999999999999985 466553 456899999999999999999998764
Q ss_pred hccCCCCCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcC---CeEEeCCcChHHHHHHHHHHHHHHHH
Q 024066 80 EKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGK---NTIYCGGAGNGAAAKICNNLTMAVSM 156 (273)
Q Consensus 80 ~~~g~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~---~i~~~G~~g~a~~~Kl~~n~~~~~~~ 156 (273)
|+.|+|+||+|++..++.|+ ++|+||++++|++++|+|+.++. +++|+|++|+|+.+||++|++..+++
T Consensus 112 -------g~~~vdapV~G~~~~a~~g~-~~~~gG~~~~~~~~~~~l~~~~~~~~~~~~~G~~g~a~~~Kl~~n~~~~~~~ 183 (299)
T PRK12490 112 -------GIHYVDCGTSGGVWGLRNGY-CLMVGGDKEIYDRLEPVFKALAPEGPGYVHAGPVGSGHFLKMVHNGIEYGMM 183 (299)
T ss_pred -------CCeEEeCCCCCCHHHHhcCC-eEEecCCHHHHHHHHHHHHHhcCcCCcEEEECCcCHHHHHHHHHHHHHHHHH
Confidence 38999999999999999998 89999999999999999999997 79999999999999999999999999
Q ss_pred HHHHHHHHHHHHcC--CCHHHHHHHHhhc-CCcccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHH---HHHHHHHH
Q 024066 157 LGVSEALTLGQSLG--ISASTLTKILNSS-SARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDL---NLALASAK 230 (273)
Q Consensus 157 ~~~~Ea~~la~~~G--l~~~~~~~~l~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~---~~~~~~a~ 230 (273)
++++|++.++++.| +|+++++++++.+ .++||+++.+.+ .+..+++ .|.++.+.||+ ++++++++
T Consensus 184 ~~~aEa~~l~~~~g~~ld~~~~~~~~~~~~~~~s~~l~~~~~-------~~~~~~~--~~~l~~~~KD~~~~~l~~~~A~ 254 (299)
T PRK12490 184 QAYAEGLELLDKSDFDFDVEDVARLWRNGSVIRSWLLDLTVK-------ALAEDPK--LAGIKGYVNDSGEGRWTVEEAI 254 (299)
T ss_pred HHHHHHHHHHHHcccCCCHHHHHHHHcCCcHHHHHHHHHHHH-------HHhhCCC--hhhhhHHHHhcCcHHHHHHHHH
Confidence 99999999999999 9999999999964 488887765433 1223333 36789999998 89999999
Q ss_pred HhCCCChHHHHHH-HHHHHHHHCCCCCCcHHHHHHHHh
Q 024066 231 EVGVDCPLTSQAQ-DIYAKLCENGHDSKDFSCVFQHYY 267 (273)
Q Consensus 231 ~~g~~~~~~~~~~-~~~~~a~~~G~g~~d~sai~~~~~ 267 (273)
+.|+|+|++..++ .+|....++|.|+.|++++.+++-
T Consensus 255 ~~g~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~f~ 292 (299)
T PRK12490 255 ELAVAAPVIAASLFMRFASQEDDSFHMKVVSALRNQFG 292 (299)
T ss_pred HcCCCHHHHHHHHHHHHHhCccCChHHHHHHHHHHhhC
Confidence 9999999999996 999999999999999999988764
No 11
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=100.00 E-value=8.1e-40 Score=305.42 Aligned_cols=223 Identities=19% Similarity=0.231 Sum_probs=197.9
Q ss_pred CCC---CCCCHHHHHhc---CCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhh
Q 024066 6 GVP---TKETPFEVAEA---SDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILK 79 (273)
Q Consensus 6 Ga~---~~~s~~e~~~~---advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~ 79 (273)
|++ .++|++|+++. +|+||+||++++++++|+. ++++.+ .+|++|||+||++|.++++++++++++
T Consensus 53 Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV~~Vi~---gl~~~l--~~G~iiID~sT~~~~~t~~~~~~l~~~--- 124 (493)
T PLN02350 53 GNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAPVDQTIK---ALSEYM--EPGDCIIDGGNEWYENTERRIKEAAEK--- 124 (493)
T ss_pred CCcccccCCCHHHHHhcCCCCCEEEEECCCcHHHHHHHH---HHHhhc--CCCCEEEECCCCCHHHHHHHHHHHHHc---
Confidence 654 78999999987 9999999999999999984 577764 467899999999999999999999864
Q ss_pred hccCCCCCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcC------CeEEeCCcChHHHHHHHHHHHHH
Q 024066 80 EKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGK------NTIYCGGAGNGAAAKICNNLTMA 153 (273)
Q Consensus 80 ~~~g~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~------~i~~~G~~g~a~~~Kl~~n~~~~ 153 (273)
|++|+|+||+||+.+|+.|+ ++|+||++++|++++|+|+.++. +++|+|++|+|+.+||++|.+.+
T Consensus 125 -------Gi~fldapVSGG~~gA~~G~-~im~GG~~~a~~~v~pvL~~ia~k~~~~~~v~~vG~~GaG~~vKlv~N~i~~ 196 (493)
T PLN02350 125 -------GLLYLGMGVSGGEEGARNGP-SLMPGGSFEAYKNIEDILEKVAAQVDDGPCVTYIGPGGAGNFVKMVHNGIEY 196 (493)
T ss_pred -------CCeEEeCCCcCCHHHhcCCC-eEEecCCHHHHHHHHHHHHHHhhhcCCCCcEEEeCCcCHHHHHHHHHHHHHH
Confidence 38999999999999999999 99999999999999999999995 49999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH-cCCCHHHHHHH---HhhcCCcccccccCCCCCCcccCCCCCC-CCCCCcchhhHHHHHH-----
Q 024066 154 VSMLGVSEALTLGQS-LGISASTLTKI---LNSSSARCWSSDSYNPVPGVMEGVPASR-NYGGGFASKLMAKDLN----- 223 (273)
Q Consensus 154 ~~~~~~~Ea~~la~~-~Gl~~~~~~~~---l~~~~~~s~~~~~~~~~~~~~~~~~~~~-~~~~~f~~~~~~KD~~----- 223 (273)
+.+++++|++.++++ .|+|++++.++ ++.+.+.||+.+...+. +..+ +|.++|.++++.||++
T Consensus 197 ~~m~~iaEA~~l~~~~~Gld~~~l~~vf~~~~~g~~~S~llei~~~~-------l~~~d~~~~~f~l~~i~Kd~~~kGTg 269 (493)
T PLN02350 197 GDMQLISEAYDVLKSVGGLSNEELAEVFAEWNKGELESFLIEITADI-------FSVKDDKGDGYLVDKILDKTGMKGTG 269 (493)
T ss_pred HHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHcCCCccchHHHHHHHH-------HhhcCCCCCCchHHHHHhhhcccchH
Confidence 999999999999999 59999999998 56788888887755431 2233 4888899999999999
Q ss_pred -HHHHHHHHhCCCChH-HHHHHHHHHHHHH
Q 024066 224 -LALASAKEVGVDCPL-TSQAQDIYAKLCE 251 (273)
Q Consensus 224 -~~~~~a~~~g~~~~~-~~~~~~~~~~a~~ 251 (273)
++.+.+.+.|+|+|+ ..++.++|.+...
T Consensus 270 ~w~~~~A~~lgv~~p~i~~av~~r~~s~~k 299 (493)
T PLN02350 270 KWTVQQAAELSVAAPTIAASLDARYLSGLK 299 (493)
T ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHhccH
Confidence 999999999999999 7777788866543
No 12
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=100.00 E-value=4.4e-38 Score=280.34 Aligned_cols=239 Identities=17% Similarity=0.239 Sum_probs=206.3
Q ss_pred cccCCCCCCCCHHHHHhc---CCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchh
Q 024066 2 FSDMGVPTKETPFEVAEA---SDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCIL 78 (273)
Q Consensus 2 l~~~Ga~~~~s~~e~~~~---advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~ 78 (273)
+.+.|++.++|+.|+++. +|+||+|+|++.++++++. ++.+.+ .++++|||+||++|.+++++++.++++
T Consensus 39 ~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~~---~l~~~l--~~g~ivid~st~~~~~~~~~~~~~~~~-- 111 (301)
T PRK09599 39 LAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATID---ELAPLL--SPGDIVIDGGNSYYKDDIRRAELLAEK-- 111 (301)
T ss_pred HHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHHH---HHHhhC--CCCCEEEeCCCCChhHHHHHHHHHHHc--
Confidence 345789999999999886 6999999999989999884 465553 456899999999999999999998764
Q ss_pred hhccCCCCCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcC----CeEEeCCcChHHHHHHHHHHHHHH
Q 024066 79 KEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGK----NTIYCGGAGNGAAAKICNNLTMAV 154 (273)
Q Consensus 79 ~~~~g~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~----~i~~~G~~g~a~~~Kl~~n~~~~~ 154 (273)
|+.|+|+||+|++..++.|. ++|+||++++|++++|+|+.+++ +++|+|++|+|+.+|+++|++..+
T Consensus 112 --------g~~~~dapvsG~~~~a~~g~-~~~~gG~~~~~~~~~~~l~~~~~~~~~~~~~~G~~G~g~~~Kl~~n~l~~~ 182 (301)
T PRK09599 112 --------GIHFVDVGTSGGVWGLERGY-CLMIGGDKEAVERLEPIFKALAPRAEDGYLHAGPVGAGHFVKMVHNGIEYG 182 (301)
T ss_pred --------CCEEEeCCCCcCHHHHhcCC-eEEecCCHHHHHHHHHHHHHHcccccCCeEeECCCcHHHHHHHHHHHHHHH
Confidence 38999999999999999996 99999999999999999999999 899999999999999999999999
Q ss_pred HHHHHHHHHHHHHH--cCCCHHHHHHHHhhcC-CcccccccCCCCCCcccCCCCCCCCCCCcc-hhhHHHH---HHHHHH
Q 024066 155 SMLGVSEALTLGQS--LGISASTLTKILNSSS-ARCWSSDSYNPVPGVMEGVPASRNYGGGFA-SKLMAKD---LNLALA 227 (273)
Q Consensus 155 ~~~~~~Ea~~la~~--~Gl~~~~~~~~l~~~~-~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~-~~~~~KD---~~~~~~ 227 (273)
++.+++|++.++++ +|+|+++++++++.++ ++||+++.+.+ . + .++ +.|+ +..+.|| ++++++
T Consensus 183 ~~~~~aEa~~l~~~~~~gld~~~~~~~~~~~~~~~s~~l~~~~~---~----~-~~~--~~~~~~~~~~kd~~~~~~~~~ 252 (301)
T PRK09599 183 MMQAYAEGFELLEASRFDLDLAAVAEVWRRGSVIRSWLLDLTAD---A----L-AED--PKLDEISGYVEDSGEGRWTVE 252 (301)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHhCCcHHHHHHHHHHHH---H----H-hcC--CCHHHHHHHHHhhCcHHHHHH
Confidence 99999999999999 9999999999999875 68887765432 1 1 222 2233 4445666 599999
Q ss_pred HHHHhCCCChHHHHHHH-HHHHHHHCCCCCCcHHHHHHHH
Q 024066 228 SAKEVGVDCPLTSQAQD-IYAKLCENGHDSKDFSCVFQHY 266 (273)
Q Consensus 228 ~a~~~g~~~~~~~~~~~-~~~~a~~~G~g~~d~sai~~~~ 266 (273)
.+.+.|+|+|++.++.. +|....+.|+|+.|.+++.+++
T Consensus 253 ~A~~~~~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~f 292 (301)
T PRK09599 253 EAIDLAVPAPVIAAALFMRFRSRQEDSFADKVVAALRNGF 292 (301)
T ss_pred HHHHcCCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHhc
Confidence 99999999999999664 5999999999999999998876
No 13
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=100.00 E-value=3.5e-34 Score=266.26 Aligned_cols=215 Identities=20% Similarity=0.259 Sum_probs=183.5
Q ss_pred CCCCCCCHHHHHhc---CCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhcc
Q 024066 6 GVPTKETPFEVAEA---SDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKK 82 (273)
Q Consensus 6 Ga~~~~s~~e~~~~---advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~ 82 (273)
|++.++|++|+++. +|+||+|||+++++++|+. ++++.+ .+|++|||+||++|..++++++.++++
T Consensus 38 g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi~---~l~~~l--~~GdiiID~gn~~~~~t~~~~~~l~~~------ 106 (459)
T PRK09287 38 KIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVIE---QLLPLL--EKGDIIIDGGNSNYKDTIRREKELAEK------ 106 (459)
T ss_pred CeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHHH---HHHhcC--CCCCEEEECCCCCHHHHHHHHHHHHhc------
Confidence 68899999999985 8999999999999999994 577764 467899999999999999999999764
Q ss_pred CCCCCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCCe-------EEeCCcChHHHHHHHHHHHHHHH
Q 024066 83 DSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNT-------IYCGGAGNGAAAKICNNLTMAVS 155 (273)
Q Consensus 83 g~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~i-------~~~G~~g~a~~~Kl~~n~~~~~~ 155 (273)
|++|+|+||+||+.+|+.|. ++|+||++++|++++|+|+.++.++ +|+|+.|+|+.+||++|.+.++.
T Consensus 107 ----Gi~fvdapVSGG~~gA~~G~-siM~GG~~~a~~~~~piL~~ia~~~~~g~~c~~~vG~~GaGh~vKmvhN~ie~~~ 181 (459)
T PRK09287 107 ----GIHFIGMGVSGGEEGALHGP-SIMPGGQKEAYELVAPILEKIAAKVEDGEPCVTYIGPDGAGHYVKMVHNGIEYGD 181 (459)
T ss_pred ----CCeEEecCCCCCHHHHhcCC-EEEEeCCHHHHHHHHHHHHHHhhhhcCCCCceeeeCCCCHHHHHHHHHHHHHHHH
Confidence 38999999999999999998 9999999999999999999999887 99999999999999999999999
Q ss_pred HHHHHHHHHHHH-HcCCCHHHHHHHH---hhcCCcccccccCCCCCCcccCCCCCCCCCCCcc-hhhHH------HHHHH
Q 024066 156 MLGVSEALTLGQ-SLGISASTLTKIL---NSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFA-SKLMA------KDLNL 224 (273)
Q Consensus 156 ~~~~~Ea~~la~-~~Gl~~~~~~~~l---~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~-~~~~~------KD~~~ 224 (273)
+++++|++.+++ +.|++++++.+++ +.+.+.||+.+...+ .+..+||..+.. ++... -.-+.
T Consensus 182 mq~iaEa~~l~~~~~Gl~~~~l~~v~~~wn~g~~~S~l~ei~~~-------~l~~~d~~~~~~~~d~i~d~~~~~gtg~W 254 (459)
T PRK09287 182 MQLIAEAYDLLKDGLGLSAEEIADVFAEWNKGELNSYLIEITAD-------ILRQKDEETGKPLVDVILDKAGQKGTGKW 254 (459)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCCccChHHHhHhH-------HHhcCCCCCCCcchHHhcCcccCCcHHHH
Confidence 999999999999 5999999999998 577788888775543 233456533321 22221 12456
Q ss_pred HHHHHHHhCCCChHHHHHH
Q 024066 225 ALASAKEVGVDCPLTSQAQ 243 (273)
Q Consensus 225 ~~~~a~~~g~~~~~~~~~~ 243 (273)
....|-+.|+|.|++..+.
T Consensus 255 t~~~a~~~~v~~~~i~~Av 273 (459)
T PRK09287 255 TSQSALDLGVPLTLITEAV 273 (459)
T ss_pred HHHHHHHhCCChHHHHHHH
Confidence 7788999999999987764
No 14
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=100.00 E-value=8.7e-32 Score=239.43 Aligned_cols=219 Identities=21% Similarity=0.312 Sum_probs=185.9
Q ss_pred cccCCCCCCCCHHHHHh---cCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchh
Q 024066 2 FSDMGVPTKETPFEVAE---ASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCIL 78 (273)
Q Consensus 2 l~~~Ga~~~~s~~e~~~---~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~ 78 (273)
+.+.|+..+.|+.++++ ++|+||+|||++ ++++|+. ++.+.+ .++++|||+||+.|.+++++.+.++++
T Consensus 39 l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~~~v~~---~l~~~l--~~g~ivid~st~~~~~t~~~~~~~~~~-- 110 (298)
T TIGR00872 39 MKEDRTTGVANLRELSQRLSAPRVVWVMVPHG-IVDAVLE---ELAPTL--EKGDIVIDGGNSYYKDSLRRYKLLKEK-- 110 (298)
T ss_pred HHHcCCcccCCHHHHHhhcCCCCEEEEEcCch-HHHHHHH---HHHhhC--CCCCEEEECCCCCcccHHHHHHHHHhc--
Confidence 34567777888888664 589999999998 9999985 466553 456899999999999999999998763
Q ss_pred hhccCCCCCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcC---CeEEeCCcChHHHHHHHHHHHHHHH
Q 024066 79 KEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGK---NTIYCGGAGNGAAAKICNNLTMAVS 155 (273)
Q Consensus 79 ~~~~g~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~---~i~~~G~~g~a~~~Kl~~n~~~~~~ 155 (273)
|++|+|+||+|++.+++.| +++|+||++++|++++|+|+.++. .++|+|+.|+|+.+|+++|.+..+.
T Consensus 111 --------g~~~vda~vsGg~~~a~~G-~~~~~gG~~~~~~~~~~~l~~~~~~~~~~~~~G~~G~~~~~K~~~n~l~~~~ 181 (298)
T TIGR00872 111 --------GIHLLDCGTSGGVWGRERG-YCFMIGGDGEAFARAEPLFADVAPEEQGYLYCGPCGSGHFVKMVHNGIEYGM 181 (298)
T ss_pred --------CCeEEecCCCCCHHHHhcC-CeeeeCCCHHHHHHHHHHHHHhcCcCCCEEEECCccHhHHHHHHHHHHHHHH
Confidence 3899999999999999999 599999999999999999999996 5899999999999999999999999
Q ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHhhcC-CcccccccCCCCCCcccCCCCCCCCCCCcchh-hHHHHHHHHHHHHHH
Q 024066 156 MLGVSEALTLGQSL--GISASTLTKILNSSS-ARCWSSDSYNPVPGVMEGVPASRNYGGGFASK-LMAKDLNLALASAKE 231 (273)
Q Consensus 156 ~~~~~Ea~~la~~~--Gl~~~~~~~~l~~~~-~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~-~~~KD~~~~~~~a~~ 231 (273)
+++++|++.++++. |+|++++.++++.++ .+||+++.+.+ . +..+++.+.|... ...+|.++++..+.+
T Consensus 182 ~~~~aE~~~l~~~~g~~ld~~~~~~i~~~g~~~~s~~l~~~~~---~----~~~~~~~~~~~~~~~~~~~~r~~v~~a~~ 254 (298)
T TIGR00872 182 MAAIAEGFEILRNSQFDFDIPEVARVWRRGSVIRSWLLDLTAI---A----FRESPDLAEFSGRVSDSGEGRWTVIAAID 254 (298)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHcCCchhHhHHHHHHHH---H----HhcCCcHHHHHHHHHhhccHHHHHHHHHH
Confidence 99999999999998 579999999999986 58888765432 1 2233444456544 467889999999999
Q ss_pred hCCCChHHHHHHH
Q 024066 232 VGVDCPLTSQAQD 244 (273)
Q Consensus 232 ~g~~~~~~~~~~~ 244 (273)
.|+|+|.+..+..
T Consensus 255 ~g~p~P~~~~al~ 267 (298)
T TIGR00872 255 LGVPAPVIATSLQ 267 (298)
T ss_pred hCCCHHHHHHHHH
Confidence 9999999999653
No 15
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=99.97 E-value=1.7e-30 Score=242.52 Aligned_cols=219 Identities=19% Similarity=0.223 Sum_probs=179.5
Q ss_pred CCCCCCHHHHHh---cCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccC
Q 024066 7 VPTKETPFEVAE---ASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKD 83 (273)
Q Consensus 7 a~~~~s~~e~~~---~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g 83 (273)
.+.++|++|+++ ++|+||+||++++++++|+. ++++.+ .+|++|||+||+.|..++++.+++.++
T Consensus 51 i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~~vi~---~l~~~L--~~g~iIID~gn~~~~dt~~r~~~l~~~------- 118 (470)
T PTZ00142 51 VKGYHTLEELVNSLKKPRKVILLIKAGEAVDETID---NLLPLL--EKGDIIIDGGNEWYLNTERRIKRCEEK------- 118 (470)
T ss_pred ceecCCHHHHHhcCCCCCEEEEEeCChHHHHHHHH---HHHhhC--CCCCEEEECCCCCHHHHHHHHHHHHHc-------
Confidence 346889999997 48999999999999999985 466654 467899999999999999999999864
Q ss_pred CCCCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCC------eEEeCCcChHHHHHHHHHHHHHHHHH
Q 024066 84 SWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKN------TIYCGGAGNGAAAKICNNLTMAVSML 157 (273)
Q Consensus 84 ~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~------i~~~G~~g~a~~~Kl~~n~~~~~~~~ 157 (273)
|++|+|+||+||+.+|++|+ ++|+||++++|++++|+|+.++.+ ++|+|+.|+|+.+||++|.+.++.++
T Consensus 119 ---Gi~fldapVSGG~~gA~~G~-~lm~GG~~~a~~~~~piL~~ia~~~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~ 194 (470)
T PTZ00142 119 ---GILYLGMGVSGGEEGARYGP-SLMPGGNKEAYDHVKDILEKCSAKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQ 194 (470)
T ss_pred ---CCeEEcCCCCCCHHHHhcCC-EEEEeCCHHHHHHHHHHHHHHhhhcCCCCeEEEECCCCHHHHHHHHhHHHHHHHHH
Confidence 38999999999999999999 899999999999999999999987 89999999999999999999999999
Q ss_pred HHHHHHHHHH-HcCCCHHHHHHHH---hhcCCcccccccCCCCCCcccCCCCCCCCCC-CcchhhH------HHHHHHHH
Q 024066 158 GVSEALTLGQ-SLGISASTLTKIL---NSSSARCWSSDSYNPVPGVMEGVPASRNYGG-GFASKLM------AKDLNLAL 226 (273)
Q Consensus 158 ~~~Ea~~la~-~~Gl~~~~~~~~l---~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~-~f~~~~~------~KD~~~~~ 226 (273)
+++|++.+++ +.|++++++.+++ +.+..+||+.+..... +. ..|-.. ..-++.. .-.-+...
T Consensus 195 ~iaEa~~l~~~~~gl~~~~l~~v~~~w~~g~~~S~l~ei~~~~---~~----~~d~~~~~~~l~~i~d~~~~~gtg~wt~ 267 (470)
T PTZ00142 195 LISESYKLMKHILGMSNEELSEVFNKWNEGILNSYLIEITAKI---LA----KKDDLGEEHLVDKILDIAGSKGTGKWTV 267 (470)
T ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHcCCCccCHHHHHHHHH---hh----cccccCCCcchhhhcCcccCCchHHhHH
Confidence 9999999998 7999999999988 4777888877654322 11 111010 1112211 12245677
Q ss_pred HHHHHhCCCChHHHHHH-HHHHH
Q 024066 227 ASAKEVGVDCPLTSQAQ-DIYAK 248 (273)
Q Consensus 227 ~~a~~~g~~~~~~~~~~-~~~~~ 248 (273)
..|-+.|+|.|.+..+. .++..
T Consensus 268 ~~a~~~~v~~p~i~~a~~~R~~S 290 (470)
T PTZ00142 268 QEALERGIPVPTMAASVDARNIS 290 (470)
T ss_pred HHHHHcCCCchHHHHHHHHHHhh
Confidence 88999999999998876 45443
No 16
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=99.97 E-value=2.2e-30 Score=241.80 Aligned_cols=218 Identities=19% Similarity=0.252 Sum_probs=177.9
Q ss_pred CCCCCCHHHHHh---cCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccC
Q 024066 7 VPTKETPFEVAE---ASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKD 83 (273)
Q Consensus 7 a~~~~s~~e~~~---~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g 83 (273)
+..++|++++++ ++|+||+|||++.++++|+. ++++.+ .+|++|||+||+.|.+++++.+.+.++
T Consensus 48 ~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~Vi~---~l~~~L--~~g~iIID~gns~~~~t~~~~~~l~~~------- 115 (467)
T TIGR00873 48 IVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAVIN---QLLPLL--EKGDIIIDGGNSHYPDTERRYKELKAK------- 115 (467)
T ss_pred ceecCCHHHHHhhcCCCCEEEEECCCcHHHHHHHH---HHHhhC--CCCCEEEECCCcCHHHHHHHHHHHHhc-------
Confidence 667889999885 58999999999999999985 466653 467899999999999999999988763
Q ss_pred CCCCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCC------eEEeCCcChHHHHHHHHHHHHHHHHH
Q 024066 84 SWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKN------TIYCGGAGNGAAAKICNNLTMAVSML 157 (273)
Q Consensus 84 ~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~------i~~~G~~g~a~~~Kl~~n~~~~~~~~ 157 (273)
|++|+|+||+||+.+|+.|. ++|+||++++|++++|+|+.++.+ ++|+|+.|+|+.+||++|.+.+++++
T Consensus 116 ---gi~fvdapVsGG~~gA~~G~-~im~GG~~~a~~~~~p~L~~ia~~~~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~ 191 (467)
T TIGR00873 116 ---GILFVGSGVSGGEEGARKGP-SIMPGGSAEAWPLVAPIFQKIAAKVDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQ 191 (467)
T ss_pred ---CCEEEcCCCCCCHHHHhcCC-cCCCCCCHHHHHHHHHHHHHHhhhcCCCCceEEECCcCHHHHHHHHHHHHHHHHHH
Confidence 38999999999999999998 999999999999999999999987 48999999999999999999999999
Q ss_pred HHHHHHHHHH-HcCCCHHHHHHHH---hhcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhH------HHHHHHHHH
Q 024066 158 GVSEALTLGQ-SLGISASTLTKIL---NSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLM------AKDLNLALA 227 (273)
Q Consensus 158 ~~~Ea~~la~-~~Gl~~~~~~~~l---~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~------~KD~~~~~~ 227 (273)
+++|++.+++ +.|++++++.+++ +.+.++||+.+...+.. ..+|-....=++.. .-.-+....
T Consensus 192 ~~aEa~~ll~~~~g~~~~~l~~v~~~w~~~~~~S~l~~~~~~~~-------~~~d~~~~~~l~~i~~~~~~~gtg~wt~~ 264 (467)
T TIGR00873 192 LICEAYDILKDGLGLSNEEIAEVFTEWNNGELDSYLIEITADIL-------KKKDEDGKPLVDKILDTAGQKGTGKWTAI 264 (467)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHhcCCcccchHHHhHHHHH-------hccCCCCCccHHhhcCcccCccHHHHHHH
Confidence 9999999985 7999999999999 67778888877554321 11111101111111 122456778
Q ss_pred HHHHhCCCChHHHHHH-HHHH
Q 024066 228 SAKEVGVDCPLTSQAQ-DIYA 247 (273)
Q Consensus 228 ~a~~~g~~~~~~~~~~-~~~~ 247 (273)
.|-+.|+|.|.+..+. .++.
T Consensus 265 ~a~~~~v~~p~i~~av~~R~~ 285 (467)
T TIGR00873 265 SALDLGVPVTLITESVFARYL 285 (467)
T ss_pred HHHHcCCCchHHHHHHHHHhc
Confidence 8999999999988765 4443
No 17
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=99.96 E-value=1.4e-28 Score=228.10 Aligned_cols=212 Identities=16% Similarity=0.165 Sum_probs=178.6
Q ss_pred CCCCCCHHHHHhcCCEEEEeCCChHH---------HHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhch
Q 024066 7 VPTKETPFEVAEASDVVITMLPSSSH---------VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCI 77 (273)
Q Consensus 7 a~~~~s~~e~~~~advvi~~v~~~~a---------v~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g 77 (273)
++.++++.+++++||+||+|||++.+ +.+++. ++.+.+ .++++||++||++|++++++.+.+.++
T Consensus 64 l~~~~~~~~~~~~advvii~vpt~~~~~~~~d~~~v~~~~~---~i~~~l--~~g~lvi~~STv~pgt~~~l~~~~~~~- 137 (411)
T TIGR03026 64 LRATTDYEDAIRDADVIIICVPTPLKEDGSPDLSYVESAAE---TIAKHL--RKGATVVLESTVPPGTTEEVVKPILER- 137 (411)
T ss_pred eEEECCHHHHHhhCCEEEEEeCCCCCCCCCcChHHHHHHHH---HHHHhc--CCCCEEEEeCcCCCCchHHHHHHHHHh-
Confidence 56778899999999999999999853 555553 465553 456899999999999999998766542
Q ss_pred hhhccCCCCCc-eEEEecCCCCHHHHhcCce--------EEEeecCHHHHHHHHHHHHHhc-CCeEEeCCcChHHHHHHH
Q 024066 78 LKEKKDSWENP-VMLDAPVSGGVLAAEAGTL--------TFMVGGSEDAYQAAKPLFLSMG-KNTIYCGGAGNGAAAKIC 147 (273)
Q Consensus 78 ~~~~~g~~~g~-~~ldapv~G~~~~a~~g~l--------~~~vgG~~~~~~~~~~~l~~~~-~~i~~~G~~g~a~~~Kl~ 147 (273)
..| . .++|+||+++|..+..|++ .+++|++++.+++++++|+.++ ..++++|++++|+.+|++
T Consensus 138 ---~~g----~~~~~d~~v~~~Pe~~~~G~~~~~~~~~~~iv~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~ 210 (411)
T TIGR03026 138 ---ASG----LKLGEDFYLAYNPEFLREGNAVHDLLNPDRIVGGETEEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLA 210 (411)
T ss_pred ---hcC----CCCCCCceEEECCCcCCCCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHH
Confidence 111 2 2678999999999999997 8999999999999999999998 578999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCC--cchhhHHHHHHHH
Q 024066 148 NNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG--FASKLMAKDLNLA 225 (273)
Q Consensus 148 ~n~~~~~~~~~~~Ea~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~--f~~~~~~KD~~~~ 225 (273)
+|++...++++++|++.+|++.|+|+++++++++.+. ++..++|.|+ |...++.||++++
T Consensus 211 ~N~~~a~~ia~~nE~~~la~~~GiD~~~v~~~~~~~~------------------~i~~~~~~pg~g~gg~c~~KD~~~l 272 (411)
T TIGR03026 211 ENTFRAVKIAFANELARICEALGIDVYEVIEAAGTDP------------------RIGFNFLNPGPGVGGHCIPKDPLAL 272 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhCCCC------------------CCCCCcCCCCCCCCCCchhhhHHHH
Confidence 9999999999999999999999999999999997541 1223566665 5678899999999
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHH
Q 024066 226 LASAKEVGVDCPLTSQAQDIYAKL 249 (273)
Q Consensus 226 ~~~a~~~g~~~~~~~~~~~~~~~a 249 (273)
++.+++.|+++|+++++++..+.-
T Consensus 273 ~~~a~~~g~~~~l~~~~~~~N~~~ 296 (411)
T TIGR03026 273 IYKAKELGYNPELIEAAREINDSQ 296 (411)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHh
Confidence 999999999999999998766543
No 18
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.95 E-value=5.7e-28 Score=196.73 Aligned_cols=123 Identities=41% Similarity=0.643 Sum_probs=108.0
Q ss_pred cccCCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhc
Q 024066 2 FSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEK 81 (273)
Q Consensus 2 l~~~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~ 81 (273)
|.+.|++.++|++|++++||+||+|||+++++++++++++ +++++ .+|++|||+||++|++++++++.++++
T Consensus 40 ~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~-i~~~l--~~g~iiid~sT~~p~~~~~~~~~~~~~----- 111 (163)
T PF03446_consen 40 LAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGEN-ILAGL--RPGKIIIDMSTISPETSRELAERLAAK----- 111 (163)
T ss_dssp HHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTT-HGGGS---TTEEEEE-SS--HHHHHHHHHHHHHT-----
T ss_pred hHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhH-Hhhcc--ccceEEEecCCcchhhhhhhhhhhhhc-----
Confidence 4567999999999999999999999999999999999877 88874 578999999999999999999999864
Q ss_pred cCCCCCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCCeEE-eCC
Q 024066 82 KDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIY-CGG 137 (273)
Q Consensus 82 ~g~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~i~~-~G~ 137 (273)
|++|+|+||+|+++.+++|++++|+||++++|++++|+|+.|+.+++| +||
T Consensus 112 -----g~~~vdapV~Gg~~~a~~g~l~~~~gG~~~~~~~~~~~l~~~~~~v~~~~G~ 163 (163)
T PF03446_consen 112 -----GVRYVDAPVSGGPPGAEEGTLTIMVGGDEEAFERVRPLLEAMGKNVYHYVGP 163 (163)
T ss_dssp -----TEEEEEEEEESHHHHHHHTTEEEEEES-HHHHHHHHHHHHHHEEEEEEE-ES
T ss_pred -----cceeeeeeeecccccccccceEEEccCCHHHHHHHHHHHHHHhCCceeeeCc
Confidence 389999999999999999999999999999999999999999999995 486
No 19
>PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D ....
Probab=99.93 E-value=4.5e-26 Score=176.79 Aligned_cols=122 Identities=34% Similarity=0.576 Sum_probs=109.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhH
Q 024066 139 GNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLM 218 (273)
Q Consensus 139 g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 218 (273)
|+|+++|+++|++..+++.+++|++.++++.|||+++++++++.++++||.++.+.| . .+..++|+|+|+++++
T Consensus 1 G~g~~~Kl~~N~l~~~~~~~~aEa~~la~~~Gld~~~~~~vl~~~~~~s~~~~~~~~--~----~~~~~~~~~~f~l~~~ 74 (122)
T PF14833_consen 1 GAGQAMKLANNLLIAANMAALAEALALAEKAGLDPEQLLDVLSAGSGGSWMLKNRAP--R----MILNGDFDPGFSLDLA 74 (122)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHTSTTHBHHHHHHHH--H----HHHTTTTCSSSBHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHccCCcCchHHHhhhh--h----hhhcccCCccchhHhh
Confidence 789999999999999999999999999999999999999999999999998765532 1 2457899999999999
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCCCCCCcHHHHHHHH
Q 024066 219 AKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHY 266 (273)
Q Consensus 219 ~KD~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~G~g~~d~sai~~~~ 266 (273)
.||++++++++++.|+|+|+.+.++++|+.+.++|+|++|+++++++|
T Consensus 75 ~KDl~l~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~D~sai~~~~ 122 (122)
T PF14833_consen 75 RKDLRLALDLAKEAGVPLPLGSAARQLYQAAKAQGGGDEDFSAIYKLL 122 (122)
T ss_dssp HHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHTTTTTSBGGGGHHHH
T ss_pred ccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHhHC
Confidence 999999999999999999999999999999999999999999999975
No 20
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=99.92 E-value=1.2e-24 Score=201.66 Aligned_cols=213 Identities=11% Similarity=0.124 Sum_probs=167.3
Q ss_pred CCCCCCCHHHHHhcCCEEEEeCCCh------HHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhh
Q 024066 6 GVPTKETPFEVAEASDVVITMLPSS------SHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILK 79 (273)
Q Consensus 6 Ga~~~~s~~e~~~~advvi~~v~~~------~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~ 79 (273)
|...+++..+++++||++|+|||+| .+++.|+.+.+++.+++ ++|++||++||+.|.+++++.+...++
T Consensus 63 g~l~~t~~~~~~~~advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l--~~g~lVI~~STv~pgtt~~~~~~~l~~--- 137 (425)
T PRK15182 63 RYLKFTSEIEKIKECNFYIITVPTPINTYKQPDLTPLIKASETVGTVL--NRGDIVVYESTVYPGCTEEECVPILAR--- 137 (425)
T ss_pred CCeeEEeCHHHHcCCCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhc--CCCCEEEEecCCCCcchHHHHHHHHHh---
Confidence 3335667677899999999999999 45577777667788774 467899999999999999876665432
Q ss_pred hccCCCCCceEEE--------ecCCCCHHHHhcCceEEEeec-CHHHHHHHHHHHHHhc-CCeEEeCCcChHHHHHHHHH
Q 024066 80 EKKDSWENPVMLD--------APVSGGVLAAEAGTLTFMVGG-SEDAYQAAKPLFLSMG-KNTIYCGGAGNGAAAKICNN 149 (273)
Q Consensus 80 ~~~g~~~g~~~ld--------apv~G~~~~a~~g~l~~~vgG-~~~~~~~~~~~l~~~~-~~i~~~G~~g~a~~~Kl~~n 149 (273)
.. |..+.| .|+.+|.......++..+++| +++..++++++++.+. ..+++++++++|+.+|+++|
T Consensus 138 -~~----g~~~~~~~~~~~~PE~v~~G~a~~~~~~~~riv~G~~~~~~~~~~~ly~~~~~~~~~~~~~~~~AE~~Kl~~N 212 (425)
T PRK15182 138 -MS----GMTFNQDFYVGYSPERINPGDKKHRLTNIKKITSGSTAQIAELIDEVYQQIISAGTYKAESIKVAEAAKVIEN 212 (425)
T ss_pred -cc----CCCcCCCeeEeeCCCcCCCCcccccccCCCeEEECCCHHHHHHHHHHHHHHhhcCcEEecCHHHHHHHHHHHH
Confidence 11 133444 346666666666666655555 6678899999999987 35788999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCC-cchhhHHHHHHHHHHH
Q 024066 150 LTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG-FASKLMAKDLNLALAS 228 (273)
Q Consensus 150 ~~~~~~~~~~~Ea~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-f~~~~~~KD~~~~~~~ 228 (273)
++...++++++|++.+|++.|+|.+++++++... |.+. .+.|+ |...|+.||...++..
T Consensus 213 ~~~av~Ia~~NE~a~lae~~GiD~~~v~~a~~~~----~~~~----------------~~~pG~vGG~ClpkD~~~L~~~ 272 (425)
T PRK15182 213 TQRDLNIALVNELAIIFNRLNIDTEAVLRAAGSK----WNFL----------------PFRPGLVGGHCIGVDPYYLTHK 272 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcCHHHHHHHhcCC----CCcc----------------cCCCCccccccccccHHHHHHH
Confidence 9999999999999999999999999999996543 2111 12344 7778999999999999
Q ss_pred HHHhCCCChHHHHHHHHHHH
Q 024066 229 AKEVGVDCPLTSQAQDIYAK 248 (273)
Q Consensus 229 a~~~g~~~~~~~~~~~~~~~ 248 (273)
+++.|+++++++++++.-+.
T Consensus 273 a~~~g~~~~l~~~a~~iN~~ 292 (425)
T PRK15182 273 SQGIGYYPEIILAGRRLNDN 292 (425)
T ss_pred HHhcCCCcHHHHHHHHHHHH
Confidence 99999999999999876543
No 21
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.92 E-value=9.5e-25 Score=181.59 Aligned_cols=225 Identities=21% Similarity=0.306 Sum_probs=178.9
Q ss_pred cccCCCCCCCCHHHHHhc---CCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchh
Q 024066 2 FSDMGVPTKETPFEVAEA---SDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCIL 78 (273)
Q Consensus 2 l~~~Ga~~~~s~~e~~~~---advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~ 78 (273)
+++.|++.++|+.|.++. ..+|++|||..+.+.+|+.. +.+.+ ..|.+|||-.++....+++..+.++++
T Consensus 39 ~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi~~---la~~L--~~GDivIDGGNS~y~Ds~rr~~~l~~k-- 111 (300)
T COG1023 39 LKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVIDD---LAPLL--SAGDIVIDGGNSNYKDSLRRAKLLAEK-- 111 (300)
T ss_pred HHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHHHH---HHhhc--CCCCEEEECCccchHHHHHHHHHHHhc--
Confidence 467799999999998764 78999999999899999865 44332 467899999999999999999999874
Q ss_pred hhccCCCCCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcC---CeEEeCCcChHHHHHHHHHHHHHHH
Q 024066 79 KEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGK---NTIYCGGAGNGAAAKICNNLTMAVS 155 (273)
Q Consensus 79 ~~~~g~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~---~i~~~G~~g~a~~~Kl~~n~~~~~~ 155 (273)
|++|+|+..|||+.+++.|. .+|+|||+++|++++|+|+.++. ...|+|+.|+|+.+||++|-+.+++
T Consensus 112 --------gi~flD~GTSGG~~G~~~G~-~lMiGG~~~a~~~~~pif~~lA~ge~Gyl~~Gp~GsGHfvKMVHNGIEYGm 182 (300)
T COG1023 112 --------GIHFLDVGTSGGVWGAERGY-CLMIGGDEEAVERLEPIFKALAPGEDGYLYCGPSGSGHFVKMVHNGIEYGM 182 (300)
T ss_pred --------CCeEEeccCCCCchhhhcCc-eEEecCcHHHHHHHHHHHHhhCcCcCccccccCCCcchhHHHHhccHHHHH
Confidence 49999999999999999998 89999999999999999999987 4789999999999999999999999
Q ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHhhcC-CcccccccCCCCCCcccCCCCCCCCCCCcchhhHHH---HHHHHHHHH
Q 024066 156 MLGVSEALTLGQSL--GISASTLTKILNSSS-ARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAK---DLNLALASA 229 (273)
Q Consensus 156 ~~~~~Ea~~la~~~--Gl~~~~~~~~l~~~~-~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~K---D~~~~~~~a 229 (273)
+++++|.+.+.++. .+|.+++.++.+.++ .+||+++..... +.+ +.+++ .+.-... .=+..++.+
T Consensus 183 M~a~aEGfelL~~s~fD~D~~~VA~vW~hGSVIrSWLldLt~~A---f~~---d~~L~---q~~g~v~dSGEGrWTv~~a 253 (300)
T COG1023 183 MQAIAEGFELLKNSPFDYDLEAVAEVWNHGSVIRSWLLDLTAEA---FKK---DPDLD---QISGRVSDSGEGRWTVEEA 253 (300)
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHhCcchHHHHHHHHHHHH---Hhh---CCCHH---HhcCeeccCCCceeehHHH
Confidence 99999999999986 577889999999876 678876533210 000 00110 0000111 123456788
Q ss_pred HHhCCCChHHHHHH-HHHHHHHH
Q 024066 230 KEVGVDCPLTSQAQ-DIYAKLCE 251 (273)
Q Consensus 230 ~~~g~~~~~~~~~~-~~~~~a~~ 251 (273)
-+.|+|.|++..++ .+|++-..
T Consensus 254 ldlgvpaPVia~al~~Rf~S~~~ 276 (300)
T COG1023 254 LDLGVPAPVIALALMMRFRSRQD 276 (300)
T ss_pred HhcCCCchHHHHHHHHHHhccch
Confidence 89999999998776 66665433
No 22
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=99.91 E-value=4.5e-23 Score=191.06 Aligned_cols=215 Identities=15% Similarity=0.149 Sum_probs=166.8
Q ss_pred cCCCCCCCCHHHHHhcCCEEEEeCCCh---------HHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHh
Q 024066 4 DMGVPTKETPFEVAEASDVVITMLPSS---------SHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVS 74 (273)
Q Consensus 4 ~~Ga~~~~s~~e~~~~advvi~~v~~~---------~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~ 74 (273)
+.|...+.+. .++||+||+|||++ ..+.+++. ++.+++ ++|++||++||++|.+++++...+.
T Consensus 63 ~~g~l~~~~~---~~~aDvvii~vptp~~~~~~~dl~~v~~~~~---~i~~~l--~~g~iVI~~STv~pgtt~~~~~~l~ 134 (415)
T PRK11064 63 EGGYLRATTT---PEPADAFLIAVPTPFKGDHEPDLTYVEAAAK---SIAPVL--KKGDLVILESTSPVGATEQMAEWLA 134 (415)
T ss_pred hcCceeeecc---cccCCEEEEEcCCCCCCCCCcChHHHHHHHH---HHHHhC--CCCCEEEEeCCCCCCHHHHHHHHHH
Confidence 3454444442 34799999999998 56666663 466653 4678999999999999999999887
Q ss_pred hchhh----hccCCCCCceEEEec--CCCCHHHHhcCceEEEeec-CHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHH
Q 024066 75 NCILK----EKKDSWENPVMLDAP--VSGGVLAAEAGTLTFMVGG-SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKIC 147 (273)
Q Consensus 75 ~~g~~----~~~g~~~g~~~ldap--v~G~~~~a~~g~l~~~vgG-~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~ 147 (273)
+++.. ..+|....+.++++| +.+|...+..+++..++|| +++.+++++++|+.++..++++|++++|+.+|++
T Consensus 135 ~~~~~~~~~~~~g~~~~f~v~~~PE~~~~G~~~~~~~~~~~vvgG~~~~~~~~~~~ly~~~~~~~~~~~~~~~Ae~~Kl~ 214 (415)
T PRK11064 135 EARPDLTFPQQAGEQADINIAYCPERVLPGQVMVELIKNDRVIGGMTPVCSARASELYKIFLEGECVVTNSRTAEMCKLT 214 (415)
T ss_pred HhccCCcccccccCCCCeEEEECCCccCCCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHhcCCCeeeCCHHHHHHHHHH
Confidence 64200 000101236789999 8888888888899999999 8999999999999999989999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHH
Q 024066 148 NNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALA 227 (273)
Q Consensus 148 ~n~~~~~~~~~~~Ea~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~ 227 (273)
+|++.+.++++++|+..+|++.|+|++++++.++..+ ++ ..+. ..++|...|+.||...+..
T Consensus 215 ~N~~~a~~ia~~nE~~~lae~~GiD~~~v~~~~~~~~---ri-~~l~--------------pG~G~GG~ClpkD~~~L~~ 276 (415)
T PRK11064 215 ENSFRDVNIAFANELSLICADQGINVWELIRLANRHP---RV-NILQ--------------PGPGVGGHCIAVDPWFIVA 276 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhccCC---Cc-ccCC--------------CCCCCCCccccccHHHHHH
Confidence 9999999999999999999999999999999987542 11 1111 1235677899999987744
Q ss_pred HHHHhCCCChHHHHHHHHHH
Q 024066 228 SAKEVGVDCPLTSQAQDIYA 247 (273)
Q Consensus 228 ~a~~~g~~~~~~~~~~~~~~ 247 (273)
+.+.++++++++++.-+
T Consensus 277 ---~~~~~~~l~~~a~~~N~ 293 (415)
T PRK11064 277 ---QNPQQARLIRTAREVND 293 (415)
T ss_pred ---hcCCccHHHHHHHHHHH
Confidence 55667888888876443
No 23
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=99.89 E-value=1.1e-21 Score=180.05 Aligned_cols=201 Identities=17% Similarity=0.170 Sum_probs=159.0
Q ss_pred CCCCCCC--HHHHHhcCCEEEEeCCCh----------HHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHH
Q 024066 6 GVPTKET--PFEVAEASDVVITMLPSS----------SHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAV 73 (273)
Q Consensus 6 Ga~~~~s--~~e~~~~advvi~~v~~~----------~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~ 73 (273)
+.+...| +.+++++||+||+|||++ .++++++. ++.+ + .+|++||++||++|.+++++.+.+
T Consensus 58 ~~~l~~t~~~~~~~~~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~---~i~~-~--~~g~lVV~~STv~pgtt~~l~~~~ 131 (388)
T PRK15057 58 KIHFNATLDKNEAYRDADYVIIATPTDYDPKTNYFNTSSVESVIK---DVVE-I--NPYAVMVIKSTVPVGFTAAMHKKY 131 (388)
T ss_pred CCcEEEecchhhhhcCCCEEEEeCCCCCccCCCCcChHHHHHHHH---HHHh-c--CCCCEEEEeeecCCchHHHHHHHh
Confidence 4445443 788899999999999988 67777774 3544 2 356899999999999999999987
Q ss_pred hhchhhhccCCCCCceEEEecCCCCHHHHhcCce--------EEEeecCHHHHHHHHHHHHH--hcCCeE-EeCCcChHH
Q 024066 74 SNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTL--------TFMVGGSEDAYQAAKPLFLS--MGKNTI-YCGGAGNGA 142 (273)
Q Consensus 74 ~~~g~~~~~g~~~g~~~ldapv~G~~~~a~~g~l--------~~~vgG~~~~~~~~~~~l~~--~~~~i~-~~G~~g~a~ 142 (273)
.++ ++.| +|..+..|++ .+++||+++..+++.++|.. ++..+. +++++++|+
T Consensus 132 ~~~----------~v~~-------~PE~l~~G~a~~d~~~p~rvv~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE 194 (388)
T PRK15057 132 RTE----------NIIF-------SPEFLREGKALYDNLHPSRIVIGERSERAERFAALLQEGAIKQNIPTLFTDSTEAE 194 (388)
T ss_pred hcC----------cEEE-------CcccccCCcccccccCCCEEEEEcCcHHHHHHHHHHHhhhhcCCCceeeCCHHHHH
Confidence 642 2444 7788888898 89999999989999999954 565555 789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHH
Q 024066 143 AAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDL 222 (273)
Q Consensus 143 ~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~ 222 (273)
.+|+++|++...++++++|+..+|++.|+|.++++++++..+ .+...+ + ...++|...|+.||.
T Consensus 195 ~~Kl~~N~~~a~~Ia~~NE~a~lae~~GiD~~eV~~a~~~d~---ri~~~~----------l---~pG~G~GG~ClpkD~ 258 (388)
T PRK15057 195 AIKLFANTYLAMRVAYFNELDSYAESLGLNTRQIIEGVCLDP---RIGNHY----------N---NPSFGYGGYCLPKDT 258 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHhcCCC---CCCCcc----------C---CCCCCCCCcChhhhH
Confidence 999999999999999999999999999999999999997642 111100 0 012367788999999
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHH
Q 024066 223 NLALASAKEVGVDCPLTSQAQDIYA 247 (273)
Q Consensus 223 ~~~~~~a~~~g~~~~~~~~~~~~~~ 247 (273)
..+...+ .++++++++++++.-+
T Consensus 259 ~~L~~~~--~~~~~~l~~~~~~~N~ 281 (388)
T PRK15057 259 KQLLANY--QSVPNNLISAIVDANR 281 (388)
T ss_pred HHHHHhc--cCCCcHHHHHHHHHHH
Confidence 9887665 5678899999886543
No 24
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.86 E-value=7e-22 Score=178.20 Aligned_cols=235 Identities=16% Similarity=0.160 Sum_probs=184.4
Q ss_pred CCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCC-CCHHH--HHHHHHHHhhchhhhccC
Q 024066 7 VPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSST-IDPQT--SRNISAAVSNCILKEKKD 83 (273)
Q Consensus 7 a~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST-~~P~~--~~~l~~~~~~~g~~~~~g 83 (273)
+..+++++|+++++|+||+|+|+. ++++++.. + +++.++|+++| +.|.+ .+.+++.+.+. . ..
T Consensus 62 ~~~~~~~~e~~~~aD~Vi~~v~~~-~~~~v~~~---l------~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~--~-~~- 127 (328)
T PRK14618 62 LYPTADPEEALAGADFAVVAVPSK-ALRETLAG---L------PRALGYVSCAKGLAPDGGRLSELARVLEFL--T-QA- 127 (328)
T ss_pred eEEeCCHHHHHcCCCEEEEECchH-HHHHHHHh---c------CcCCEEEEEeeccccCCCccchHHHHHHHh--c-CC-
Confidence 446778999999999999999998 56877732 2 24468999999 58775 67787776531 0 01
Q ss_pred CCCCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCCeE--------EeCC---------cChHHHHHH
Q 024066 84 SWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTI--------YCGG---------AGNGAAAKI 146 (273)
Q Consensus 84 ~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~i~--------~~G~---------~g~a~~~Kl 146 (273)
++.+++.|..........+++.++.||+++.+++++++|+..+.+++ ++|. .|.++.+|+
T Consensus 128 ---~~~~~~gP~~a~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~~~~~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~ 204 (328)
T PRK14618 128 ---RVAVLSGPNHAEEIARFLPAATVVASPEPGLARRVQAAFSGPSFRVYTSRDRVGVELGGALKNVIALAAGMVDGLKL 204 (328)
T ss_pred ---CeEEEECccHHHHHHcCCCeEEEEEeCCHHHHHHHHHHhCCCcEEEEecCCccchhhhHHHHHHHHHHHHHHHHhCC
Confidence 25677777655555555578899999999999999999999998776 4565 699999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhh----cCCcccccccCCCCCCcccCCCCCC---C-CCCCcchhhH
Q 024066 147 CNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNS----SSARCWSSDSYNPVPGVMEGVPASR---N-YGGGFASKLM 218 (273)
Q Consensus 147 ~~n~~~~~~~~~~~Ea~~la~~~Gl~~~~~~~~l~~----~~~~s~~~~~~~~~~~~~~~~~~~~---~-~~~~f~~~~~ 218 (273)
.+|+.......++.|++.++++.|++++++++++.. +++.|+.++.+... .++..+ + |++.|.+...
T Consensus 205 ~~n~~~~~~~~~~~E~~~la~~~G~~~~~~~~~~~~gDl~~t~~s~~~rn~~~g-----~~~~~g~~~~~~~~~~~~~~g 279 (328)
T PRK14618 205 GDNAKAALITRGLREMVRFGVALGAEEATFYGLSGLGDLIATATSPHSRNRAAG-----EAIVRGVDREHLEAGGKVVEG 279 (328)
T ss_pred CccHHHHHHHHHHHHHHHHHHHhCCCccchhcCcchhheeeEeccCCCccHHHH-----HHHhCCCCHHHHHHcCCEEec
Confidence 999999999999999999999999999999999765 34566665543211 123344 3 6678999999
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCCCCCCcHHHHHHHHhcCC
Q 024066 219 AKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGK 270 (273)
Q Consensus 219 ~KD~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~G~g~~d~sai~~~~~~~~ 270 (273)
.||++++.+++++.|+++|+++.+.+++ +++.|...+++.+.+++
T Consensus 280 ~kd~~~~~~la~~~~~~~Pl~~~~~~~~-------~~~~~~~~~~~~~~~~~ 324 (328)
T PRK14618 280 LYTVKALDAWAKAHGHDLPIVEAVARVA-------RGGWDPLAGLRSLMGRE 324 (328)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHH-------hCCCCHHHHHHHHhcCC
Confidence 9999999999999999999999999887 67778888888776554
No 25
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.85 E-value=8.3e-21 Score=169.75 Aligned_cols=223 Identities=17% Similarity=0.205 Sum_probs=174.6
Q ss_pred CCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCC-CCHHHHHHHHHHHhhchhhhccCCCCCce
Q 024066 11 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSST-IDPQTSRNISAAVSNCILKEKKDSWENPV 89 (273)
Q Consensus 11 ~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST-~~P~~~~~l~~~~~~~g~~~~~g~~~g~~ 89 (273)
+++.++++++|+||+|+|++ ++++++.. +.+.. ..++++||++|+ ..|++.+.+.+.+.. .
T Consensus 39 ~~~~~~~~~advvi~~vp~~-~~~~v~~~---l~~~~-~~~~~ivi~~s~gi~~~~~~~~s~~~~~-------------~ 100 (308)
T PRK14619 39 LSLAAVLADADVIVSAVSMK-GVRPVAEQ---VQALN-LPPETIIVTATKGLDPETTRTPSQIWQA-------------A 100 (308)
T ss_pred CCHHHHHhcCCEEEEECChH-HHHHHHHH---HHHhc-CCCCcEEEEeCCcccCCCCcCHHHHHHH-------------H
Confidence 57899999999999999995 88888853 33210 134679999987 888888877777653 3
Q ss_pred EEEecCC--CCHHHHh-----cCceEEEeecCHHHHHHHHHHHHHhcCCeEEeCC-cC----------------hHHHHH
Q 024066 90 MLDAPVS--GGVLAAE-----AGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGG-AG----------------NGAAAK 145 (273)
Q Consensus 90 ~ldapv~--G~~~~a~-----~g~l~~~vgG~~~~~~~~~~~l~~~~~~i~~~G~-~g----------------~a~~~K 145 (273)
|.++||. ++|..+. ..++.+++|++.+.+++++++|+.++.++++.++ .| .+..+|
T Consensus 101 ~~~~~v~~i~gp~~a~ei~~~~~~~~~~ag~~~~~~~~v~~ll~~~~~~~~~~~d~~G~~~~~alkNv~ai~~G~~~~~~ 180 (308)
T PRK14619 101 FPNHPVVVLSGPNLSKEIQQGLPAATVVASRDLAAAETVQQIFSSERFRVYTNSDPLGTELGGTLKNVIAIAAGVCDGLQ 180 (308)
T ss_pred cCCCceEEEECCCcHHHHhcCCCeEEEEEeCCHHHHHHHHHHhCCCcEEEEecCCchhhhhHHHHHHHHHHHHHHHHHcC
Confidence 5677874 4544332 2477899999999999999999999888886655 23 244555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhH-------
Q 024066 146 ICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLM------- 218 (273)
Q Consensus 146 l~~n~~~~~~~~~~~Ea~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~------- 218 (273)
+.+|........++.|++.++++.|++++.++++ .+.++++... + .+..|+|.++|.+...
T Consensus 181 l~~N~~~a~~~~~~~E~~~l~~~~G~~~~t~~~~--~g~gd~~~t~-----~-----~~~~rn~~~g~~l~~g~~~~~~~ 248 (308)
T PRK14619 181 LGTNAKAALVTRALPEMIRVGTHLGAQTETFYGL--SGLGDLLATC-----T-----SPLSRNYQVGYGLAQGKSLEQIL 248 (308)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHhCCCccccccc--cchhhhheee-----c-----CCCCccHHHHHHHHCCCCHHHHH
Confidence 9999999999999999999999999999999984 3555544411 1 2346788878888887
Q ss_pred ---------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCCCCCCcHHHHHHHHhcCC
Q 024066 219 ---------AKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGK 270 (273)
Q Consensus 219 ---------~KD~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~G~g~~d~sai~~~~~~~~ 270 (273)
.||++++.+++++.|+++|+++.+.++| +++.+...+++.+.++.
T Consensus 249 ~~~~~~~eG~~~~~~~~~~~~~~~~~~Pl~~~v~~i~-------~~~~~~~~~~~~l~~~~ 302 (308)
T PRK14619 249 AELEGTAEGVNTANVLVQLAQQQNIAVPITEQVYRLL-------QGEITPQQALEELMERD 302 (308)
T ss_pred HhcCCEeecHHHHHHHHHHHHHcCCCCCHHHHHHHHH-------cCCCCHHHHHHHHHcCC
Confidence 9999999999999999999999999999 57778888888776543
No 26
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.83 E-value=1.6e-19 Score=161.48 Aligned_cols=221 Identities=12% Similarity=0.105 Sum_probs=173.6
Q ss_pred CCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCC
Q 024066 8 PTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWEN 87 (273)
Q Consensus 8 ~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~~g 87 (273)
+.+.++++++++||+||.|+|++.+++..+++. +-+. ..+.++|.+ |+++....++++.+... +
T Consensus 71 ~~~~~~~~a~~~ad~Vi~avpe~~~~k~~~~~~--l~~~---~~~~~ii~s-sts~~~~~~la~~~~~~----------~ 134 (308)
T PRK06129 71 RVTDSLADAVADADYVQESAPENLELKRALFAE--LDAL---APPHAILAS-STSALLASAFTEHLAGR----------E 134 (308)
T ss_pred EEECcHHHhhCCCCEEEECCcCCHHHHHHHHHH--HHHh---CCCcceEEE-eCCCCCHHHHHHhcCCc----------c
Confidence 567899999999999999999998877766542 2221 233566764 44455677888877431 3
Q ss_pred ceEEEecCCCCHHHHhcCceEEEee---cCHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHH
Q 024066 88 PVMLDAPVSGGVLAAEAGTLTFMVG---GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALT 164 (273)
Q Consensus 88 ~~~ldapv~G~~~~a~~g~l~~~vg---G~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~ 164 (273)
..++|.|+.+... ..+..+++ ++++++++++++++.+|++++|+|+.+.|. ++||+ +.+.++|++.
T Consensus 135 ~~~~~hp~~p~~~----~~lveiv~~~~t~~~~~~~~~~~~~~lG~~~v~v~~~~~G~---i~nrl----~~a~~~EA~~ 203 (308)
T PRK06129 135 RCLVAHPINPPYL----IPVVEVVPAPWTAPATLARAEALYRAAGQSPVRLRREIDGF---VLNRL----QGALLREAFR 203 (308)
T ss_pred cEEEEecCCCccc----CceEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCccH---HHHHH----HHHHHHHHHH
Confidence 6899999986422 14677886 889999999999999999999999866665 56664 4489999999
Q ss_pred HHHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHH
Q 024066 165 LGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQD 244 (273)
Q Consensus 165 la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~g~~~~~~~~~~~ 244 (273)
++++.|++++++.++++.+.+.+|.+ +.|+ +..+.|.++|...++.||+.+..+++++.+.|.|++....+
T Consensus 204 l~~~g~~~~~~id~~~~~~~g~~~~~--~gp~-------~~~d~~~~~g~~~~~~k~~~l~~~~~~~~~~~~~~~~~~~~ 274 (308)
T PRK06129 204 LVADGVASVDDIDAVIRDGLGLRWSF--MGPF-------ETIDLNAPGGVADYAQRYGPMYRRMAAERGQPVPWDGELVA 274 (308)
T ss_pred HHHcCCCCHHHHHHHHHhccCCCccC--cCHH-------HHHhccccccHHHHHHHHHHHHHhhccccCCCchhhHHHHH
Confidence 99999999999999999998888764 3332 23456778899999999999999999999999999988887
Q ss_pred HHHHHHHCCCCCCcHHHHHH
Q 024066 245 IYAKLCENGHDSKDFSCVFQ 264 (273)
Q Consensus 245 ~~~~a~~~G~g~~d~sai~~ 264 (273)
......+.-++..++..+.+
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~ 294 (308)
T PRK06129 275 RVEAERRAALPLDQLAARQA 294 (308)
T ss_pred HHHHHHHHHcCCCCHHHHHH
Confidence 77777777788888877655
No 27
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=99.82 E-value=7.9e-20 Score=164.33 Aligned_cols=239 Identities=17% Similarity=0.175 Sum_probs=175.4
Q ss_pred CCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcC-CCCHHHHHHHHHHHhhchhhhccCC
Q 024066 6 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSS-TIDPQTSRNISAAVSNCILKEKKDS 84 (273)
Q Consensus 6 Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~S-T~~P~~~~~l~~~~~~~g~~~~~g~ 84 (273)
+++.+.++.+++++||+||+|++++ ++++++.+ +.+.. .++++||+++ |++|++.+++++.+.+.. +.
T Consensus 58 ~~~~~~~~~~~~~~~D~vi~~v~~~-~~~~v~~~---l~~~~--~~~~~vi~~~ngv~~~~~~~~~~~l~~~~-----~~ 126 (325)
T PRK00094 58 NLRATTDLAEALADADLILVAVPSQ-ALREVLKQ---LKPLL--PPDAPIVWATKGIEPGTGKLLSEVLEEEL-----PD 126 (325)
T ss_pred CeEEeCCHHHHHhCCCEEEEeCCHH-HHHHHHHH---HHhhc--CCCCEEEEEeecccCCCCCcHHHHHHHHc-----CC
Confidence 5667788999999999999999984 77888753 44432 3457899888 999988888888776531 10
Q ss_pred CCCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCCeEEeCC-----------------cChHHHHHHH
Q 024066 85 WENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGG-----------------AGNGAAAKIC 147 (273)
Q Consensus 85 ~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~i~~~G~-----------------~g~a~~~Kl~ 147 (273)
.....+++.|..+....+...++.++.|++.+.+++++++|+..+.++++..+ .|.+..+|+.
T Consensus 127 ~~~~~~~~~P~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~ 206 (325)
T PRK00094 127 LAPIAVLSGPSFAKEVARGLPTAVVIASTDEELAERVQELFHSPYFRVYTNTDVIGVELGGALKNVIAIAAGIADGLGLG 206 (325)
T ss_pred CCceEEEECccHHHHHHcCCCcEEEEEeCCHHHHHHHHHHhCCCCEEEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCC
Confidence 01245777787766555666677788888999999999999998876655433 2788889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc----CCcccccccCCCCCCcccCCCCCCC-C-----CCCcchhh
Q 024066 148 NNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSS----SARCWSSDSYNPVPGVMEGVPASRN-Y-----GGGFASKL 217 (273)
Q Consensus 148 ~n~~~~~~~~~~~Ea~~la~~~Gl~~~~~~~~l~~~----~~~s~~~~~~~~~~~~~~~~~~~~~-~-----~~~f~~~~ 217 (273)
+|.+......++.|++.++++.|+|++++++++..+ ...++..+.+.+ + ..+..+. + .++ ....
T Consensus 207 ~n~~~~~~~~~~~E~~~la~~~G~d~~~~~~~~~~~~~~~~~~s~~~~~~~~--g---~~~~~~~~~~~~~~~~~-~~~~ 280 (325)
T PRK00094 207 DNARAALITRGLAEITRLGVALGANPETFLGLAGLGDLVLTCTSPLSRNRRF--G---LALGQGKSLEEALAEIG-MVAE 280 (325)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhCCChhhhhcccHhhhhhhhccCCCCccHHH--H---HHHHCCCCHHHHHHHcC-CEee
Confidence 999999999999999999999999999998876543 111222111110 0 0111111 1 112 4567
Q ss_pred HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCCCCCCcHHHHHHHHhc
Q 024066 218 MAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 268 (273)
Q Consensus 218 ~~KD~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~G~g~~d~sai~~~~~~ 268 (273)
..||++++.+++++.|+++|+.+.+.++| +++.+...+++.+.+
T Consensus 281 ~~kd~~~~~~~a~~~~~~~P~~~~~~~~~-------~~~~~~~~~~~~~~~ 324 (325)
T PRK00094 281 GVRTAKAVYELAKKLGVEMPITEAVYAVL-------YEGKDPREAVEDLMG 324 (325)
T ss_pred cHHHHHHHHHHHHHhCCCCCHHHHHHHHH-------cCCCCHHHHHHHHhc
Confidence 79999999999999999999999999998 677888888877654
No 28
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=99.81 E-value=5e-19 Score=159.63 Aligned_cols=163 Identities=17% Similarity=0.197 Sum_probs=132.3
Q ss_pred ccCCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHH-HHHHHHHhhchhhhc
Q 024066 3 SDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTS-RNISAAVSNCILKEK 81 (273)
Q Consensus 3 ~~~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~-~~l~~~~~~~g~~~~ 81 (273)
.+.|++++.++.+++++||+||+|+|++.++++++. ++.+.+ +.+++|||+||++|... +.+.+++.... +
T Consensus 65 ~~~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl~---~L~~~L--~~g~IVId~ST~~~~~~s~~l~~~l~~~~---~ 136 (342)
T PRK12557 65 EDAGVKVVSDDAEAAKHGEIHILFTPFGKKTVEIAK---NILPHL--PENAVICNTCTVSPVVLYYSLEGELRTKR---K 136 (342)
T ss_pred HHCCCEEeCCHHHHHhCCCEEEEECCCcHHHHHHHH---HHHhhC--CCCCEEEEecCCCHHHHHHHHHHHhcccc---c
Confidence 456888889999999999999999999887899985 466653 45689999999999998 77777775310 0
Q ss_pred cCCCCCceEEE-ecCCCCHHHHhcCceEEEeec--------CHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHH
Q 024066 82 KDSWENPVMLD-APVSGGVLAAEAGTLTFMVGG--------SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM 152 (273)
Q Consensus 82 ~g~~~g~~~ld-apv~G~~~~a~~g~l~~~vgG--------~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~~ 152 (273)
..|+.+.+ +++.|++ .+.+.++.|| +++.+++++++|+.++.++++++ .|.++.+|+++|++.
T Consensus 137 ---~~gi~~~~p~~v~Gae----~g~l~Vm~gg~t~~~~~~~~e~~e~v~~LL~a~G~~v~~~~-~g~~~~vk~~~n~l~ 208 (342)
T PRK12557 137 ---DVGISSMHPAAVPGTP----QHGHYVIAGKTTNGTELATEEQIEKCVELAESIGKEPYVVP-ADVVSAVADMGSLVT 208 (342)
T ss_pred ---ccCeeecCCccccccc----cchheEEeCCCcccccCCCHHHHHHHHHHHHHcCCEEEEeC-HHHHHHHHHHHHHHH
Confidence 01355554 4455554 4566788876 88999999999999999887766 699999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 024066 153 AVSMLGVSEALTLGQSLGISASTLTKILN 181 (273)
Q Consensus 153 ~~~~~~~~Ea~~la~~~Gl~~~~~~~~l~ 181 (273)
+.++++.+|++.++++.|.++.++++-+.
T Consensus 209 av~~a~~aE~~~l~~~~~~~p~~~~~~~~ 237 (342)
T PRK12557 209 AVALSGVLDYYSVGTKIIKAPKEMIEKQI 237 (342)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999999999999998877544
No 29
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.70 E-value=7e-17 Score=143.49 Aligned_cols=219 Identities=19% Similarity=0.260 Sum_probs=164.4
Q ss_pred CCCCCCHHHHHh---cCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccC
Q 024066 7 VPTKETPFEVAE---ASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKD 83 (273)
Q Consensus 7 a~~~~s~~e~~~---~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g 83 (273)
...+.|+.|.+. ....|++||.....|++++.. +++.+ .+|.++||-.++....+.+..+.+++.
T Consensus 52 i~~~~sieefV~~Le~PRkI~lMVkAG~~VD~~I~~---L~p~L--e~gDIiIDGGNs~y~DT~RR~~eL~~~------- 119 (473)
T COG0362 52 IVPAYSIEEFVASLEKPRKILLMVKAGTPVDAVIEQ---LLPLL--EKGDIIIDGGNSHYKDTIRRNKELSEK------- 119 (473)
T ss_pred ccccCcHHHHHHHhcCCceEEEEEecCCcHHHHHHH---HHhhc--CCCCEEEeCCCcCCchHHHHHHHHHhc-------
Confidence 455778887655 588999999998888888864 66664 567899999999888888888888763
Q ss_pred CCCCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcC------CeEEeCCcChHHHHHHHHHHHHHHHHH
Q 024066 84 SWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGK------NTIYCGGAGNGAAAKICNNLTMAVSML 157 (273)
Q Consensus 84 ~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~------~i~~~G~~g~a~~~Kl~~n~~~~~~~~ 157 (273)
|+.|+-+.||||..+|..|. ++|.||++++|+.+.|+|+.++. ++.|+|+-|+|+.+||++|-+.++-|+
T Consensus 120 ---Gi~FvG~GVSGGEeGA~~GP-SiMpGG~~eay~~v~pil~~IaAk~~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQ 195 (473)
T COG0362 120 ---GILFVGMGVSGGEEGARHGP-SIMPGGQKEAYELVAPILTKIAAKVDGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQ 195 (473)
T ss_pred ---CCeEEeccccccccccccCC-CcCCCCCHHHHHHHHHHHHHHHhhcCCCCceeeECCCCCCceeeeeecCchHHHHH
Confidence 48999999999999999999 99999999999999999999964 478999999999999999999999999
Q ss_pred HHHHHHHHHHH-cCCCHHHHHHHHhh---cCCcccccccCCCCCCcccCCCCCCCCCCC-cchhhHHH-----H-HHHHH
Q 024066 158 GVSEALTLGQS-LGISASTLTKILNS---SSARCWSSDSYNPVPGVMEGVPASRNYGGG-FASKLMAK-----D-LNLAL 226 (273)
Q Consensus 158 ~~~Ea~~la~~-~Gl~~~~~~~~l~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-f~~~~~~K-----D-~~~~~ 226 (273)
.++|++.+.+. .|++.+++.+++.. +-.+|++.+....+.+. .|-+.+ -=++..+. . =+...
T Consensus 196 lIaE~Y~ilk~~lgls~~ei~~vF~~WN~geL~SYLIeIT~~IL~~-------kD~~~~kplvd~ILD~AgQKGTGkWt~ 268 (473)
T COG0362 196 LIAEAYDILKDGLGLSAEEIAEVFEEWNKGELDSYLIEITADILRK-------KDEEGGKPLVDKILDKAGQKGTGKWTV 268 (473)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHhccCcchHHHHHHHHHHHhh-------cCcccCCchHHHHHHHhcCCCcchhhH
Confidence 99999999998 89999888777654 44445443322111111 111111 01111110 0 13345
Q ss_pred HHHHHhCCCChHHHHHH-HHHHH
Q 024066 227 ASAKEVGVDCPLTSQAQ-DIYAK 248 (273)
Q Consensus 227 ~~a~~~g~~~~~~~~~~-~~~~~ 248 (273)
..|-+.|+|++++..+. .+|-+
T Consensus 269 ~~AldlGvP~t~I~eaVfAR~lS 291 (473)
T COG0362 269 ISALDLGVPLTLITEAVFARYLS 291 (473)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHH
Confidence 66888999999876553 55543
No 30
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=99.70 E-value=2.1e-15 Score=141.40 Aligned_cols=211 Identities=16% Similarity=0.142 Sum_probs=159.0
Q ss_pred CCCCCCHHHHHhcCCEEEEeCCChH--------------HHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHH
Q 024066 7 VPTKETPFEVAEASDVVITMLPSSS--------------HVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAA 72 (273)
Q Consensus 7 a~~~~s~~e~~~~advvi~~v~~~~--------------av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~ 72 (273)
.+..++..+++++||++|+|||+|. .+++++. .+.+.+ +++++||..||+.|.+++++.+.
T Consensus 66 l~~t~~~~~~i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~---~i~~~l--~~~~lVv~~STvp~Gtt~~~~~~ 140 (473)
T PLN02353 66 LFFSTDVEKHVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAAR---MIADVS--KSDKIVVEKSTVPVKTAEAIEKI 140 (473)
T ss_pred EEEEcCHHHHHhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHH---HHHhhC--CCCcEEEEeCCCCCChHHHHHHH
Confidence 4456778889999999999998775 3444543 355443 45789999999999999999998
Q ss_pred HhhchhhhccCCCCCceEEEecCCCCHHHHhcCce---EEEeecC-----HHHHHHHHHHHHHhcC-CeEEeCCcChHHH
Q 024066 73 VSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTL---TFMVGGS-----EDAYQAAKPLFLSMGK-NTIYCGGAGNGAA 143 (273)
Q Consensus 73 ~~~~g~~~~~g~~~g~~~ldapv~G~~~~a~~g~l---~~~vgG~-----~~~~~~~~~~l~~~~~-~i~~~G~~g~a~~ 143 (273)
+.+.+ .| .++++.-+|..=.+..+..... .+++||. +++.++++.+++.+.+ ..+.+.++..|..
T Consensus 141 l~~~~----~g--~~f~v~~~PErl~~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~AE~ 214 (473)
T PLN02353 141 LTHNS----KG--INFQILSNPEFLAEGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAEL 214 (473)
T ss_pred HHhhC----CC--CCeEEEECCCccCCCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHHHHH
Confidence 87531 12 1467888997665555554322 3667985 2357888999998863 3566778999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHH
Q 024066 144 AKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLN 223 (273)
Q Consensus 144 ~Kl~~n~~~~~~~~~~~Ea~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~~ 223 (273)
.|++.|.+...+++.++|...+|++.|+|..++.+.++..+ ++... + + .-.++|...|+.||..
T Consensus 215 ~K~~eN~~ra~~Iaf~NEla~lce~~giD~~eV~~~~~~d~---rig~~------~----l---~PG~G~GG~ClpkD~~ 278 (473)
T PLN02353 215 SKLAANAFLAQRISSVNAMSALCEATGADVSQVSHAVGKDS---RIGPK------F----L---NASVGFGGSCFQKDIL 278 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhCCCC---cCCCC------C----C---CCCCCCCCcchhhhHH
Confidence 99999999999999999999999999999999998887542 11000 0 0 0113567789999999
Q ss_pred HHHHHHHHhCCC--ChHHHHHHH
Q 024066 224 LALASAKEVGVD--CPLTSQAQD 244 (273)
Q Consensus 224 ~~~~~a~~~g~~--~~~~~~~~~ 244 (273)
.+...+++.|++ +++++++++
T Consensus 279 ~L~~~a~~~g~~~~~~l~~~~~~ 301 (473)
T PLN02353 279 NLVYICECNGLPEVAEYWKQVIK 301 (473)
T ss_pred HHHHHHHHcCCchHHHHHHHHHH
Confidence 999999999998 778777664
No 31
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.66 E-value=3.5e-15 Score=133.64 Aligned_cols=213 Identities=15% Similarity=0.155 Sum_probs=159.7
Q ss_pred CCCCCCHHHHHhcCCEEEEeCCChHH---------HHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhch
Q 024066 7 VPTKETPFEVAEASDVVITMLPSSSH---------VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCI 77 (273)
Q Consensus 7 a~~~~s~~e~~~~advvi~~v~~~~a---------v~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g 77 (273)
-+..++.+++++++|++|+||++|.. |++|.. .+.+.+ .+.++||.-||+.|.++.++.+.+.+..
T Consensus 64 l~fTtd~~~a~~~adv~fIavgTP~~~dg~aDl~~V~ava~---~i~~~~--~~~~vvV~KSTVPvGt~~~v~~~i~~~~ 138 (414)
T COG1004 64 LRFTTDYEEAVKDADVVFIAVGTPPDEDGSADLSYVEAVAK---DIGEIL--DGKAVVVIKSTVPVGTTEEVRAKIREEN 138 (414)
T ss_pred EEEEcCHHHHHhcCCEEEEEcCCCCCCCCCccHHHHHHHHH---HHHhhc--CCCeEEEEcCCCCCCchHHHHHHHHhhc
Confidence 45678899999999999999999863 444543 355553 3448999999999999999999886531
Q ss_pred hhhccCCCCCceEEEecCCCCHHHHhcCce---EEEeecCHH-HHHHHHHHHHHh---cCCeEEeCCcChHHHHHHHHHH
Q 024066 78 LKEKKDSWENPVMLDAPVSGGVLAAEAGTL---TFMVGGSED-AYQAAKPLFLSM---GKNTIYCGGAGNGAAAKICNNL 150 (273)
Q Consensus 78 ~~~~~g~~~g~~~ldapv~G~~~~a~~g~l---~~~vgG~~~-~~~~~~~~l~~~---~~~i~~~G~~g~a~~~Kl~~n~ 150 (273)
. + +.+..+-.|-+-....|....+ -+++|...+ +.+.++.+++.+ ..++++ -+...|.++|++.|.
T Consensus 139 ---~-~--~~f~v~~NPEFLREG~Av~D~~~PdRIViG~~~~~a~~~~~ely~~~~~~~~p~l~-t~~~~AE~IKyaaNa 211 (414)
T COG1004 139 ---S-G--KDFEVASNPEFLREGSAVYDFLYPDRIVIGVRSERAAAVLRELYAPFLRQDVPILF-TDLREAELIKYAANA 211 (414)
T ss_pred ---c-c--CCceEecChHHhcCcchhhhccCCCeEEEccCChhHHHHHHHHHhhhhhcCCCEEE-ecchHHHHHHHHHHH
Confidence 1 1 1345666665554444444444 488998654 577888888775 444444 467789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHH
Q 024066 151 TMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAK 230 (273)
Q Consensus 151 ~~~~~~~~~~Ea~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~ 230 (273)
++++-++.++|...+|++.|+|.+++.+.+... ..+...+. +-..+|..+|+.||.+.++..++
T Consensus 212 fLAtKIsFiNEia~ice~~g~D~~~V~~gIGlD---~RIG~~fl-------------~aG~GyGGsCfPKD~~AL~~~a~ 275 (414)
T COG1004 212 FLATKISFINEIANICEKVGADVKQVAEGIGLD---PRIGNHFL-------------NAGFGYGGSCFPKDTKALIANAE 275 (414)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHcCCC---chhhHhhC-------------CCCCCCCCcCCcHhHHHHHHHHH
Confidence 999999999999999999999999999888543 12211110 01236788999999999999999
Q ss_pred HhCCCChHHHHHHHHHH
Q 024066 231 EVGVDCPLTSQAQDIYA 247 (273)
Q Consensus 231 ~~g~~~~~~~~~~~~~~ 247 (273)
+.|.+..+++++.+.-+
T Consensus 276 ~~~~~~~ll~avv~vN~ 292 (414)
T COG1004 276 ELGYDPNLLEAVVEVNE 292 (414)
T ss_pred hcCCchHHHHHHHHHHH
Confidence 99999999999876543
No 32
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.61 E-value=3.2e-15 Score=131.13 Aligned_cols=218 Identities=19% Similarity=0.242 Sum_probs=164.9
Q ss_pred CCCCCCHHHHHh---cCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccC
Q 024066 7 VPTKETPFEVAE---ASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKD 83 (273)
Q Consensus 7 a~~~~s~~e~~~---~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g 83 (273)
...+.|+.|.+. ...+|++.|.....|+..+.. +.+.+ .+|.+|||-.+.....+.+..+.+.+.
T Consensus 55 i~ga~S~ed~v~klk~PR~iillvkAG~pVD~~I~~---L~p~L--ekgDiIIDGGNs~y~dT~RR~~el~k~------- 122 (487)
T KOG2653|consen 55 IIGAYSLEDFVSKLKKPRVIILLVKAGAPVDQFIEE---LVPYL--EKGDIIIDGGNSEYQDTERRCRELAKK------- 122 (487)
T ss_pred ccCCCCHHHHHHhcCCCcEEEEEeeCCCcHHHHHHH---HHhhc--CCCCEEEeCCcccCcchHHHHHHHHhc-------
Confidence 345678988765 488999999999999988864 55553 467899999999888777777777653
Q ss_pred CCCCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcC-------CeEEeCCcChHHHHHHHHHHHHHHHH
Q 024066 84 SWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGK-------NTIYCGGAGNGAAAKICNNLTMAVSM 156 (273)
Q Consensus 84 ~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~-------~i~~~G~~g~a~~~Kl~~n~~~~~~~ 156 (273)
|+-|+-+.||||..+|+.|. ++|.||++++|..++++|..++. ...|+|+-|+|+.+||++|-+.++-|
T Consensus 123 ---GilfvG~GVSGGEEGAR~GP-SlMpGg~~~Awp~ik~ifq~iaakv~~~epCc~wvG~~GaGhfVKMVHNGIEYGDM 198 (487)
T KOG2653|consen 123 ---GILFVGSGVSGGEEGARYGP-SLMPGGSKEAWPHIKDIFQKIAAKVSDGEPCCDWVGEGGAGHFVKMVHNGIEYGDM 198 (487)
T ss_pred ---CcEEEecCccCcccccccCC-ccCCCCChHHHHHHHHHHHHHHHHhcCCCCCeeeecCCCCccchhhhccCcccchH
Confidence 38999999999999999999 89999999999999999999853 36899999999999999999999999
Q ss_pred HHHHHHHHHHHH-cCCCHHHHHHHHhh---cCCcccccccCCCCCCcccCCCCCCCCCCCcchhhHHHH---------HH
Q 024066 157 LGVSEALTLGQS-LGISASTLTKILNS---SSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKD---------LN 223 (273)
Q Consensus 157 ~~~~Ea~~la~~-~Gl~~~~~~~~l~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD---------~~ 223 (273)
+.++|++.+.++ .|++.+++.+++.. +-..||+.+....+.++.+ ..|+ .+..|= =.
T Consensus 199 qLI~EaY~vlk~~~gls~~eia~vF~~WN~geleSfLieIT~dIlk~~d---~~G~-------~lv~kI~D~aGqKGTGk 268 (487)
T KOG2653|consen 199 QLICEAYDVLKSVLGLSNDEIAEVFDDWNKGELESFLIEITADILKFKD---EDGK-------PLVDKILDKAGQKGTGK 268 (487)
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHhhcccchhHHHHHHhHHHhheec---cCCC-------hHHHHHHhhhcCCCccH
Confidence 999999999999 89999988887765 3334554433322221111 0111 111111 12
Q ss_pred HHHHHHHHhCCCChHHHHHH-HHHHHHH
Q 024066 224 LALASAKEVGVDCPLTSQAQ-DIYAKLC 250 (273)
Q Consensus 224 ~~~~~a~~~g~~~~~~~~~~-~~~~~a~ 250 (273)
.....|-+.|+|.|++..+. .++-++.
T Consensus 269 wt~~~Ale~g~Pv~lI~eavfaRclS~l 296 (487)
T KOG2653|consen 269 WTVISALELGVPVTLIGEAVFARCLSAL 296 (487)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 35567888999999886654 4544443
No 33
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=99.61 E-value=1.3e-14 Score=137.64 Aligned_cols=155 Identities=15% Similarity=0.156 Sum_probs=127.0
Q ss_pred CCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCC
Q 024066 7 VPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWE 86 (273)
Q Consensus 7 a~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~~ 86 (273)
++.++|+++++++||+||.|+|++.++++.+++ .+.+. .++ .+||++||+++..+ ++++.+...
T Consensus 68 i~~~~~~~ea~~~aD~Vieavpe~~~vk~~l~~--~l~~~--~~~-~~iI~SsTsgi~~s-~l~~~~~~~---------- 131 (495)
T PRK07531 68 LTFCASLAEAVAGADWIQESVPERLDLKRRVLA--EIDAA--ARP-DALIGSSTSGFLPS-DLQEGMTHP---------- 131 (495)
T ss_pred eEeeCCHHHHhcCCCEEEEcCcCCHHHHHHHHH--HHHhh--CCC-CcEEEEcCCCCCHH-HHHhhcCCc----------
Confidence 678899999999999999999999988887654 24333 233 47899999998865 666665432
Q ss_pred CceEEEecCCCCHHHHhcCceEEEeecC---HHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHH-HHH
Q 024066 87 NPVMLDAPVSGGVLAAEAGTLTFMVGGS---EDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGV-SEA 162 (273)
Q Consensus 87 g~~~ldapv~G~~~~a~~g~l~~~vgG~---~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~~~~~~~~~-~Ea 162 (273)
+..+++.|+... ..+.++.+++|+ ++++++++++|+.+|+.+++++ |.++|++...++.++ .|+
T Consensus 132 ~r~~~~hP~nP~----~~~~Lvevv~g~~t~~e~~~~~~~~~~~lG~~~v~~~--------k~~~gfi~nrl~~a~~~EA 199 (495)
T PRK07531 132 ERLFVAHPYNPV----YLLPLVELVGGGKTSPETIRRAKEILREIGMKPVHIA--------KEIDAFVGDRLLEALWREA 199 (495)
T ss_pred ceEEEEecCCCc----ccCceEEEcCCCCCCHHHHHHHHHHHHHcCCEEEeec--------CCCcchhHHHHHHHHHHHH
Confidence 267999997732 234789999997 6899999999999999999997 688888888888884 999
Q ss_pred HHHHHHcCCCHHHHHHHHhhcCCcccc
Q 024066 163 LTLGQSLGISASTLTKILNSSSARCWS 189 (273)
Q Consensus 163 ~~la~~~Gl~~~~~~~~l~~~~~~s~~ 189 (273)
+.++++.|++++++.++++.+.+.+|.
T Consensus 200 ~~L~~~g~~s~~~id~~~~~g~g~~~~ 226 (495)
T PRK07531 200 LWLVKDGIATTEEIDDVIRYSFGLRWA 226 (495)
T ss_pred HHHHHcCCCCHHHHHHHHhhccCCCcc
Confidence 999999999999999999998887765
No 34
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.60 E-value=7.5e-15 Score=131.15 Aligned_cols=220 Identities=20% Similarity=0.205 Sum_probs=151.3
Q ss_pred cCC-CCCCCCHHHHHhcCCEEEEeCCChHH------HHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 024066 4 DMG-VPTKETPFEVAEASDVVITMLPSSSH------VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 76 (273)
Q Consensus 4 ~~G-a~~~~s~~e~~~~advvi~~v~~~~a------v~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~ 76 (273)
+.| -+..+++.++. .||++|+|||+|-. +..|....+.+.+.+ .+|.+||--||+.|.+++++..++.+.
T Consensus 69 ~~g~lraTtd~~~l~-~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L--~kG~LVIlEST~~PGTTe~v~~plle~ 145 (436)
T COG0677 69 ESGKLRATTDPEELK-ECDVFIICVPTPLKKYREPDLSYVESAARSIAPVL--KKGDLVILESTTPPGTTEEVVKPLLEE 145 (436)
T ss_pred hcCCceEecChhhcc-cCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhc--CCCCEEEEecCCCCCcHHHHHHHHHhh
Confidence 344 45556676655 89999999999842 112222223455554 567899999999999999999998763
Q ss_pred --hhhhccCCCCCceEEEec--CCCCHHHHhcCceEEEeec-CHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHH
Q 024066 77 --ILKEKKDSWENPVMLDAP--VSGGVLAAEAGTLTFMVGG-SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLT 151 (273)
Q Consensus 77 --g~~~~~g~~~g~~~ldap--v~G~~~~a~~g~l~~~vgG-~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~ 151 (273)
||+- ..++...-+| +.-|...-+--+..-++|| +++..+.+..+++.+-..++.+.+...|.+.||..|.+
T Consensus 146 ~sgL~~----~~Df~laysPERv~PG~~~~el~~~~kVIgG~tp~~~e~a~~lY~~iv~~~~~vts~~tAEm~Kl~EN~f 221 (436)
T COG0677 146 RSGLKF----GEDFYLAYSPERVLPGNVLKELVNNPKVIGGVTPKCAELAAALYKTIVEGVIPVTSARTAEMVKLTENTF 221 (436)
T ss_pred cCCCcc----cceeeEeeCccccCCCchhhhhhcCCceeecCCHHHHHHHHHHHHHheEEEEEcCChHHHHHHHHHhhhh
Confidence 2211 1235666688 3333322222244677888 56788899999999988888888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhHHH---HHHHHHHH
Q 024066 152 MAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAK---DLNLALAS 228 (273)
Q Consensus 152 ~~~~~~~~~Ea~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~K---D~~~~~~~ 228 (273)
...++++.+|...+|+++|||.++++++.++-+ | +..+.|.|+.-..++-- +|-| +-+..+ .---++++
T Consensus 222 RdVNIALaNElali~~~~GIdvwevIeaAnt~P---~-~~~~~PGpGvGGHCIpv---DP~f-l~~ka~~yg~~~rlI~t 293 (436)
T COG0677 222 RDVNIALANELALICNAMGIDVWEVIEAANTKP---R-VNIFYPGPGVGGHCIPV---DPYF-LTWKAPEYGLPARLIRT 293 (436)
T ss_pred hHHHHHHHHHHHHHHHHhCCcHHHHHHHhccCC---c-eeecCCCCCCCCccccc---Cchh-eeecccccCCchHHHHH
Confidence 999999999999999999999999999998753 3 34455555443222211 2323 222222 22335678
Q ss_pred HHHhCCCChH
Q 024066 229 AKEVGVDCPL 238 (273)
Q Consensus 229 a~~~g~~~~~ 238 (273)
|++.+-.||.
T Consensus 294 AreIN~~mP~ 303 (436)
T COG0677 294 AREINDSMPR 303 (436)
T ss_pred HHHHhccCCH
Confidence 8888766663
No 35
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=99.54 E-value=3.7e-14 Score=128.46 Aligned_cols=215 Identities=19% Similarity=0.177 Sum_probs=146.1
Q ss_pred CCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCce
Q 024066 10 KETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPV 89 (273)
Q Consensus 10 ~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~~g~~ 89 (273)
.+++ +++..+|+||+|++++. ..+++.. +.+.. .++++||+++ ..+...+++.+.+.+ ..
T Consensus 65 ~~~~-~~~~~~D~vil~vk~~~-~~~~~~~---l~~~~--~~~~iii~~~-nG~~~~~~l~~~~~~------------~~ 124 (341)
T PRK08229 65 STDP-AALATADLVLVTVKSAA-TADAAAA---LAGHA--RPGAVVVSFQ-NGVRNADVLRAALPG------------AT 124 (341)
T ss_pred ccCh-hhccCCCEEEEEecCcc-hHHHHHH---HHhhC--CCCCEEEEeC-CCCCcHHHHHHhCCC------------Cc
Confidence 3444 56789999999999875 4666642 44432 3456777774 455555666666532 24
Q ss_pred EEEe--c---CCCCHHHHh---cCceEEEeecCHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHH------
Q 024066 90 MLDA--P---VSGGVLAAE---AGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVS------ 155 (273)
Q Consensus 90 ~lda--p---v~G~~~~a~---~g~l~~~vgG~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~~~~~------ 155 (273)
++++ | ++++|..+. .|++.+. +.+.++++.++|+..+.++++.++++.++..|++.|.+...+
T Consensus 125 ~~~g~~~~~~~~~~pg~~~~~~~g~l~~~---~~~~~~~~~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~~~~al~~~~ 201 (341)
T PRK08229 125 VLAGMVPFNVISRGPGAFHQGTSGALAIE---ASPALRPFAAAFARAGLPLVTHEDMRAVQWAKLLLNLNNAVNALSGLP 201 (341)
T ss_pred EEEEEEEEEEEecCCceEEecCCCceEec---CCchHHHHHHHHHhcCCCceecchhHHHHHHHHHHHhccHHHHHhCCc
Confidence 5665 3 354444433 4554333 345678999999999999999999999999999999754444
Q ss_pred --------------HHHHHHHHHHHHHcCCCHHHHHHHHhhcC-----CcccccccCCCCCCcccCCCCCCCCCCCcchh
Q 024066 156 --------------MLGVSEALTLGQSLGISASTLTKILNSSS-----ARCWSSDSYNPVPGVMEGVPASRNYGGGFASK 216 (273)
Q Consensus 156 --------------~~~~~Ea~~la~~~Gl~~~~~~~~l~~~~-----~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 216 (273)
..++.|++.++++.|++++.+.++...+. ..++..... ...+...++.. ..
T Consensus 202 ~~~l~~~~~~~~~~~~~~~E~~~va~a~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~---~~ 271 (341)
T PRK08229 202 LKEELAQRSYRRCLALAQREALRVLKAAGIRPARLTPLPPAWIPRLLRLPDPLFRRL-------AGRMLAIDPLA---RS 271 (341)
T ss_pred hHHHhcCchHHHHHHHHHHHHHHHHHHcCCCccccCCCChhhhhhhhcCChHHHHHH-------HHHhhccCCcc---Cc
Confidence 37899999999999999876654444331 111111110 00122233322 35
Q ss_pred hHHHHHH------------HHHHHHHHhCCCChHHHHHHHHHHHHHHCCCCCC
Q 024066 217 LMAKDLN------------LALASAKEVGVDCPLTSQAQDIYAKLCENGHDSK 257 (273)
Q Consensus 217 ~~~KD~~------------~~~~~a~~~g~~~~~~~~~~~~~~~a~~~G~g~~ 257 (273)
.+.||+. .+++.|++.|+++|..+.+.++++.+.+.|....
T Consensus 272 Sm~~D~~~~r~tEi~~i~G~i~~~a~~~gv~~P~~~~~~~~~~~~~~~~~~~~ 324 (341)
T PRK08229 272 SMSDDLAAGRATEIDWINGEIVRLAGRLGAPAPVNARLCALVHEAERAGARPA 324 (341)
T ss_pred hHHHHHHcCCcchHHHHhhHHHHHHHHcCCCCcHHHHHHHHHHHHHhCCCcCC
Confidence 6999999 7999999999999999999999999988875443
No 36
>PLN02688 pyrroline-5-carboxylate reductase
Probab=99.48 E-value=4.9e-13 Score=117.07 Aligned_cols=206 Identities=16% Similarity=0.158 Sum_probs=138.4
Q ss_pred ccCCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhhchhhhc
Q 024066 3 SDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNCILKEK 81 (273)
Q Consensus 3 ~~~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~-ST~~P~~~~~l~~~~~~~g~~~~ 81 (273)
.+.|++.++++.|++++||+||+||+ ++++++++.+ +.+.. .++++||.. +++++++.+ +.+..
T Consensus 45 ~~~g~~~~~~~~e~~~~aDvVil~v~-~~~~~~vl~~---l~~~~--~~~~~iIs~~~g~~~~~l~---~~~~~------ 109 (266)
T PLN02688 45 QSLGVKTAASNTEVVKSSDVIILAVK-PQVVKDVLTE---LRPLL--SKDKLLVSVAAGITLADLQ---EWAGG------ 109 (266)
T ss_pred HHcCCEEeCChHHHHhcCCEEEEEEC-cHHHHHHHHH---HHhhc--CCCCEEEEecCCCcHHHHH---HHcCC------
Confidence 45688889999999999999999996 6789999863 44432 345677755 555555444 32210
Q ss_pred cCCCCCceEE-EecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCCeEEeCC---------cChHHHHHHHHHHH
Q 024066 82 KDSWENPVML-DAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGG---------AGNGAAAKICNNLT 151 (273)
Q Consensus 82 ~g~~~g~~~l-dapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~i~~~G~---------~g~a~~~Kl~~n~~ 151 (273)
..++ ..|..+...+.....+....+++++.+++++++|+.+|. ++|+++ .|+|.++
T Consensus 110 ------~~vvr~mP~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~G~-~~~~~e~~~d~~~~~~g~g~a~------- 175 (266)
T PLN02688 110 ------RRVVRVMPNTPCLVGEAASVMSLGPAATADDRDLVATLFGAVGK-IWVVDEKLLDAVTGLSGSGPAY------- 175 (266)
T ss_pred ------CCEEEECCCcHHHHhCceEEEEeCCCCCHHHHHHHHHHHHhCCC-EEEeCHHHcchhHhhhcCHHHH-------
Confidence 1466 366665544333222222233478899999999999999 999844 6666663
Q ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCC---cchhhHHHHHHHHHHH
Q 024066 152 MAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG---FASKLMAKDLNLALAS 228 (273)
Q Consensus 152 ~~~~~~~~~Ea~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~---f~~~~~~KD~~~~~~~ 228 (273)
.+.++.++.|+ +.+.|+++++..+++..+..+++.+-.. ++.+ |. -.+..-..--...++.
T Consensus 176 ~~~~~~a~~ea---~~~~Gl~~~~a~~~~~~~~~gs~~l~~~------------~~~~-~~~l~~~v~spgG~t~~~l~~ 239 (266)
T PLN02688 176 IFLAIEALADG---GVAAGLPRDVALSLAAQTVLGAAKMVLE------------TGKH-PGQLKDMVTSPGGTTIAGVHE 239 (266)
T ss_pred HHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHh------------cCCC-HHHHHHhCCCCchHHHHHHHH
Confidence 66677888888 8899999999999998876655432100 1111 10 0011112224556778
Q ss_pred HHHhCCCChHHHHHHHHHHHHHHCC
Q 024066 229 AKEVGVDCPLTSQAQDIYAKLCENG 253 (273)
Q Consensus 229 a~~~g~~~~~~~~~~~~~~~a~~~G 253 (273)
.++.|++-.+.++....++++.+.+
T Consensus 240 l~~~g~~~~~~~a~~~~~~r~~~~~ 264 (266)
T PLN02688 240 LEKGGFRAALMNAVVAAAKRSRELS 264 (266)
T ss_pred HHHCChHHHHHHHHHHHHHHHHHhc
Confidence 8889999999999999999988764
No 37
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.47 E-value=4e-13 Score=118.57 Aligned_cols=201 Identities=16% Similarity=0.193 Sum_probs=140.5
Q ss_pred CCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhhchhhhccC
Q 024066 5 MGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNCILKEKKD 83 (273)
Q Consensus 5 ~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~-ST~~P~~~~~l~~~~~~~g~~~~~g 83 (273)
.|++.++++.|++++||+||+||+++ ++.+++. ++.+.. .++++||++ +++++++.+++..
T Consensus 51 ~g~~~~~~~~e~~~~aDvVilav~p~-~~~~vl~---~l~~~~--~~~~liIs~~aGi~~~~l~~~~~------------ 112 (279)
T PRK07679 51 YGVKGTHNKKELLTDANILFLAMKPK-DVAEALI---PFKEYI--HNNQLIISLLAGVSTHSIRNLLQ------------ 112 (279)
T ss_pred cCceEeCCHHHHHhcCCEEEEEeCHH-HHHHHHH---HHHhhc--CCCCEEEEECCCCCHHHHHHHcC------------
Confidence 37888889999999999999999976 4556664 344432 345799996 9999998776331
Q ss_pred CCCCceEEEecCCCC---HHHHhcCceEEEeecC---HHHHHHHHHHHHHhcCCeE------E--eCCcChHHHHHHHHH
Q 024066 84 SWENPVMLDAPVSGG---VLAAEAGTLTFMVGGS---EDAYQAAKPLFLSMGKNTI------Y--CGGAGNGAAAKICNN 149 (273)
Q Consensus 84 ~~~g~~~ldapv~G~---~~~a~~g~l~~~vgG~---~~~~~~~~~~l~~~~~~i~------~--~G~~g~a~~~Kl~~n 149 (273)
. ++||+++ .+.+..+.++++++|+ ++.++.++++|+.+|..++ | +|..|+|.++
T Consensus 113 ----~---~~~v~r~mPn~~~~~~~~~t~~~~~~~~~~~~~~~v~~l~~~~G~~~~v~e~~~~~~~a~~Gsgpa~----- 180 (279)
T PRK07679 113 ----K---DVPIIRAMPNTSAAILKSATAISPSKHATAEHIQTAKALFETIGLVSVVEEEDMHAVTALSGSGPAY----- 180 (279)
T ss_pred ----C---CCeEEEECCCHHHHHhcccEEEeeCCCCCHHHHHHHHHHHHhCCcEEEeCHHHhhhHHHhhcCHHHH-----
Confidence 0 2577766 4466767788999987 5688999999999999766 5 6667777663
Q ss_pred HHHHHHHHHHHHHHH-HHHHcCCCHHHHHHHHhhcCCcc-cccccCCCCCCcccCCCCCCCC-CCCcchhhHHHHHHHHH
Q 024066 150 LTMAVSMLGVSEALT-LGQSLGISASTLTKILNSSSARC-WSSDSYNPVPGVMEGVPASRNY-GGGFASKLMAKDLNLAL 226 (273)
Q Consensus 150 ~~~~~~~~~~~Ea~~-la~~~Gl~~~~~~~~l~~~~~~s-~~~~~~~~~~~~~~~~~~~~~~-~~~f~~~~~~KD~~~~~ 226 (273)
+..+.|++. .+.+.|+|.++..+++..+..++ .+......-|. ...+++ +|+|+.. ..+
T Consensus 181 ------~~~~~eal~e~~~~~Gl~~~~a~~~~~~~~~gsa~~~~~~~~~~~-----~l~~~v~spgg~t~-------~gl 242 (279)
T PRK07679 181 ------IYYVVEAMEKAAKKIGLKEDVAKSLILQTMIGAAEMLKASEKHPS-----ILRKEITSPGGTTE-------AGI 242 (279)
T ss_pred ------HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHH-----HHHHhcCCCchHHH-------HHH
Confidence 445555555 68999999999999998854332 22211111111 233556 6677643 445
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHHHCC
Q 024066 227 ASAKEVGVDCPLTSQAQDIYAKLCENG 253 (273)
Q Consensus 227 ~~a~~~g~~~~~~~~~~~~~~~a~~~G 253 (273)
+..++.|+.--+.+++..-++++.+-|
T Consensus 243 ~~l~~~~~~~~i~~a~~~a~~r~~~l~ 269 (279)
T PRK07679 243 EVLQEHRFQQALISCITQATQRSHNLG 269 (279)
T ss_pred HHHHHCChHHHHHHHHHHHHHHHHHHH
Confidence 566677888888888888888887754
No 38
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=99.39 E-value=3.1e-12 Score=121.46 Aligned_cols=147 Identities=18% Similarity=0.180 Sum_probs=114.4
Q ss_pred CCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEE-EEcCCCCHHHHHHHHHHHhhchhhhccCCC
Q 024066 7 VPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLL-IDSSTIDPQTSRNISAAVSNCILKEKKDSW 85 (273)
Q Consensus 7 a~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~ii-id~ST~~P~~~~~l~~~~~~~g~~~~~g~~ 85 (273)
++.++++++ +.+||+||.||+++.++++++++. +-.. .+++.++ .|+||++|. ++++.+... ++ .
T Consensus 75 i~~~~~~~~-~~~aDlViEav~E~~~vK~~vf~~--l~~~--~~~~ailasntStl~i~---~la~~~~~p---~r---~ 140 (507)
T PRK08268 75 LRPVEALAD-LADCDLVVEAIVERLDVKQALFAQ--LEAI--VSPDCILATNTSSLSIT---AIAAALKHP---ER---V 140 (507)
T ss_pred eEEeCCHHH-hCCCCEEEEcCcccHHHHHHHHHH--HHhh--CCCCcEEEECCCCCCHH---HHHhhcCCc---cc---E
Confidence 467788876 559999999999999999988752 3222 2345666 499999997 455554320 01 1
Q ss_pred CCceEEE-ecCCCCHHHHhcCceEEEeec---CHHHHHHHHHHHHHhcCCeEEeCC-cChHHHHHHHHHHHHHHHHHHHH
Q 024066 86 ENPVMLD-APVSGGVLAAEAGTLTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVS 160 (273)
Q Consensus 86 ~g~~~ld-apv~G~~~~a~~g~l~~~vgG---~~~~~~~~~~~l~~~~~~i~~~G~-~g~a~~~Kl~~n~~~~~~~~~~~ 160 (273)
.|.+|++ +|++ .|+.+++| ++++++++.++++.+++..+++|+ +| +++|-+.. ..++
T Consensus 141 ~G~hff~Pa~v~---------~LvEvv~g~~Ts~~~~~~~~~l~~~lgk~pv~v~d~pG------fi~Nrll~---~~~~ 202 (507)
T PRK08268 141 AGLHFFNPVPLM---------KLVEVVSGLATDPAVADALYALARAWGKTPVRAKDTPG------FIVNRAAR---PYYT 202 (507)
T ss_pred EEEeecCCcccC---------eeEEEeCCCCCCHHHHHHHHHHHHHcCCceEEecCCCC------hHHHHHHH---HHHH
Confidence 1489999 8888 58899986 889999999999999999999998 78 35555553 4899
Q ss_pred HHHHHHHHcCCCHHHHHHHHhhcCC
Q 024066 161 EALTLGQSLGISASTLTKILNSSSA 185 (273)
Q Consensus 161 Ea~~la~~~Gl~~~~~~~~l~~~~~ 185 (273)
|++.++++.|++++++-+++..+.+
T Consensus 203 Ea~~l~~~g~~~~~~iD~al~~~~G 227 (507)
T PRK08268 203 EALRVLEEGVADPATIDAILREAAG 227 (507)
T ss_pred HHHHHHHcCCCCHHHHHHHHHhcCC
Confidence 9999999999999999999977544
No 39
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.33 E-value=1.5e-11 Score=108.98 Aligned_cols=147 Identities=18% Similarity=0.169 Sum_probs=108.2
Q ss_pred CCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEE-EEcCCCCHHHHHHHHHHHhhchhhhccCCC
Q 024066 7 VPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLL-IDSSTIDPQTSRNISAAVSNCILKEKKDSW 85 (273)
Q Consensus 7 a~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~ii-id~ST~~P~~~~~l~~~~~~~g~~~~~g~~ 85 (273)
.+.++++.+++++||+||.|+|++.+++..+++ .+.+.. +++.++ +|+||++|.+..+..+.....
T Consensus 69 i~~~~~~~~~~~~aD~Vi~avpe~~~~k~~~~~--~l~~~~--~~~~il~~~tSt~~~~~l~~~~~~~~r~--------- 135 (288)
T PRK09260 69 LSYSLDLKAAVADADLVIEAVPEKLELKKAVFE--TADAHA--PAECYIATNTSTMSPTEIASFTKRPERV--------- 135 (288)
T ss_pred eEEeCcHHHhhcCCCEEEEeccCCHHHHHHHHH--HHHhhC--CCCcEEEEcCCCCCHHHHHhhcCCcccE---------
Confidence 456788999999999999999999988777654 244432 345544 799999998765544321110
Q ss_pred CCceEEEecCCCCHHHHhcCceEEEeec---CHHHHHHHHHHHHHhcCCeEEeCC-cChHHHHHHHHHHHHHHHHHHHHH
Q 024066 86 ENPVMLDAPVSGGVLAAEAGTLTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSE 161 (273)
Q Consensus 86 ~g~~~ldapv~G~~~~a~~g~l~~~vgG---~~~~~~~~~~~l~~~~~~i~~~G~-~g~a~~~Kl~~n~~~~~~~~~~~E 161 (273)
.|.+|+ +|+.++ .|..|++| +++++++++++++.+++.++++|+ +| .+.|-+. ...++|
T Consensus 136 ~g~h~~-~Pv~~~-------~Lve~v~g~~t~~~~~~~~~~~l~~lg~~~v~v~d~~G------f~~nRl~---~~~~~e 198 (288)
T PRK09260 136 IAMHFF-NPVHKM-------KLVELIRGLETSDETVQVAKEVAEQMGKETVVVNEFPG------FVTSRIS---ALVGNE 198 (288)
T ss_pred EEEecC-CCcccC-------ceEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCccc------HHHHHHH---HHHHHH
Confidence 137888 899876 68999999 899999999999999999999998 66 2334433 357789
Q ss_pred HHHHHHHcCCCHHHHHHHHhhc
Q 024066 162 ALTLGQSLGISASTLTKILNSS 183 (273)
Q Consensus 162 a~~la~~~Gl~~~~~~~~l~~~ 183 (273)
++.+.+.--.+++++=..+..+
T Consensus 199 a~~~~~~gv~~~~~iD~~~~~g 220 (288)
T PRK09260 199 AFYMLQEGVATAEDIDKAIRLG 220 (288)
T ss_pred HHHHHHcCCCCHHHHHHHHHhC
Confidence 9999887556787764454433
No 40
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.32 E-value=9e-12 Score=111.59 Aligned_cols=141 Identities=17% Similarity=0.174 Sum_probs=113.4
Q ss_pred HHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEE
Q 024066 13 PFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD 92 (273)
Q Consensus 13 ~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~~g~~~ld 92 (273)
+.+++++||+||-||+.+.+++..+++. +.+.. +++ .|+ +||+|+-...++++.+... ...-|.+|.+
T Consensus 73 ~~~a~~~aD~ViEav~E~~~~K~~~f~~--l~~~~--~~~-~il-aSntS~~~~~~la~~~~~p------~r~~g~Hf~~ 140 (314)
T PRK08269 73 AADALADADLVFEAVPEVLDAKREALRW--LGRHV--DAD-AII-ASTTSTFLVTDLQRHVAHP------ERFLNAHWLN 140 (314)
T ss_pred hHHHhccCCEEEECCcCCHHHHHHHHHH--HHhhC--CCC-cEE-EEccccCCHHHHHhhcCCc------ccEEEEecCC
Confidence 7789999999999999999999988864 54442 344 444 8888888888999877321 1112489999
Q ss_pred ec-------CCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024066 93 AP-------VSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTL 165 (273)
Q Consensus 93 ap-------v~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l 165 (273)
.| |++++ +++++++++++++++.+|+.++++|+.+ | +++...+...++|++.+
T Consensus 141 Pp~~~~lvEVv~g~------------~t~~e~~~~~~~ll~~lGk~~v~v~d~~-G-------fi~nri~~~~l~EAl~l 200 (314)
T PRK08269 141 PAYLMPLVEVSPSD------------ATDPAVVDRLAALLERIGKVPVVCGPSP-G-------YIVPRIQALAMNEAARM 200 (314)
T ss_pred ccccCceEEEeCCC------------CCCHHHHHHHHHHHHHcCCcEEEecCCC-C-------cchHHHHHHHHHHHHHH
Confidence 99 77776 7789999999999999999999999853 2 34566678899999999
Q ss_pred HHHcCCCHHHHHHHHhhcCC
Q 024066 166 GQSLGISASTLTKILNSSSA 185 (273)
Q Consensus 166 a~~~Gl~~~~~~~~l~~~~~ 185 (273)
+++.|++++++.+++..+.+
T Consensus 201 ~e~g~~~~e~iD~a~~~g~G 220 (314)
T PRK08269 201 VEEGVASAEDIDKAIRTGFG 220 (314)
T ss_pred HHhCCCCHHHHHHHHHhCCC
Confidence 99999999999999887654
No 41
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=99.32 E-value=1.2e-11 Score=117.31 Aligned_cols=146 Identities=17% Similarity=0.171 Sum_probs=110.1
Q ss_pred CCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEE--EcCCCCHHHHHHHHHHHhhchhhhccCC
Q 024066 7 VPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLI--DSSTIDPQTSRNISAAVSNCILKEKKDS 84 (273)
Q Consensus 7 a~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iii--d~ST~~P~~~~~l~~~~~~~g~~~~~g~ 84 (273)
++.++++++ +.+||+||.||+++.++++.+++. +... .+++ .|| |+||.++. ++++.+... ..
T Consensus 73 i~~~~~~~~-l~~aDlVIEav~E~~~vK~~vf~~--l~~~--~~~~-~IlasnTStl~i~---~iA~~~~~p------~r 137 (503)
T TIGR02279 73 LIPVTDLHA-LADAGLVIEAIVENLEVKKALFAQ--LEEL--CPAD-TIIASNTSSLSIT---AIAAGLARP------ER 137 (503)
T ss_pred cEEeCCHHH-hCCCCEEEEcCcCcHHHHHHHHHH--HHhh--CCCC-eEEEECCCCCCHH---HHHHhcCcc------cc
Confidence 346778866 469999999999999999987752 3332 2343 555 56666665 455544321 11
Q ss_pred CCCceEEE-ecCCCCHHHHhcCceEEEeec---CHHHHHHHHHHHHHhcCCeEEeCC-cChHHHHHHHHHHHHHHHHHHH
Q 024066 85 WENPVMLD-APVSGGVLAAEAGTLTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGV 159 (273)
Q Consensus 85 ~~g~~~ld-apv~G~~~~a~~g~l~~~vgG---~~~~~~~~~~~l~~~~~~i~~~G~-~g~a~~~Kl~~n~~~~~~~~~~ 159 (273)
..|.+|++ +|++ .|+.+++| ++++++++.++++.+++..+++|+ +|. +.|-+. ...+
T Consensus 138 ~~G~HFf~Papv~---------~LvEvv~g~~Ts~e~~~~~~~l~~~lgk~pv~v~d~pGf------i~Nrl~---~~~~ 199 (503)
T TIGR02279 138 VAGLHFFNPAPVM---------ALVEVVSGLATAAEVAEQLYETALAWGKQPVHCHSTPGF------IVNRVA---RPYY 199 (503)
T ss_pred eEEEeccCccccC---------ceEEEeCCCCCCHHHHHHHHHHHHHcCCeeeEeCCCCCc------HHHHHH---HHHH
Confidence 12489999 8998 38999999 899999999999999999999998 774 444444 3699
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhhcCC
Q 024066 160 SEALTLGQSLGISASTLTKILNSSSA 185 (273)
Q Consensus 160 ~Ea~~la~~~Gl~~~~~~~~l~~~~~ 185 (273)
.|++.+.++.+++++++-+++..+.+
T Consensus 200 ~EA~~l~e~g~a~~~~ID~al~~~~G 225 (503)
T TIGR02279 200 AEALRALEEQVAAPAVLDAALRDGAG 225 (503)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHhcCC
Confidence 99999999999999999999987544
No 42
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.29 E-value=6.7e-10 Score=97.83 Aligned_cols=153 Identities=15% Similarity=0.272 Sum_probs=109.9
Q ss_pred cCCCC-CCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhcc
Q 024066 4 DMGVP-TKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKK 82 (273)
Q Consensus 4 ~~Ga~-~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~ 82 (273)
+.|+. .+.++.++. +||+||+|+|.+.. .+++.+ +.+ + .++++|+|++|+.+...+.+.+..
T Consensus 43 ~~g~~~~~~~~~~~~-~aD~Vilavp~~~~-~~~~~~---l~~-l--~~~~iv~d~gs~k~~i~~~~~~~~--------- 105 (275)
T PRK08507 43 ELGLVDEIVSFEELK-KCDVIFLAIPVDAI-IEILPK---LLD-I--KENTTIIDLGSTKAKIIESVPKHI--------- 105 (275)
T ss_pred HCCCCcccCCHHHHh-cCCEEEEeCcHHHH-HHHHHH---Hhc-c--CCCCEEEECccchHHHHHHHHHhc---------
Confidence 34553 455777865 49999999998754 445542 444 3 345799999998877766655431
Q ss_pred CCCCCceEEEe-cCCCC----HHHHh----cCceEEEee---cCHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHH
Q 024066 83 DSWENPVMLDA-PVSGG----VLAAE----AGTLTFMVG---GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNL 150 (273)
Q Consensus 83 g~~~g~~~lda-pv~G~----~~~a~----~g~l~~~vg---G~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~ 150 (273)
+..|+.+ |+.|+ |..+. .|...++++ ++++.++.++++++.+|.+++++++.+....+|+++|+
T Consensus 106 ----~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~~~~~~~~~~v~~l~~~~G~~~~~~~~~~hD~~~a~vs~l 181 (275)
T PRK08507 106 ----RKNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCDVEKSGEKHQERAKEIFSGLGMRIVYMDAKEHDLHAAYISHL 181 (275)
T ss_pred ----CCCEEecCCcCcCchhhHHhccHHHhCCCeEEEecCCCCCHHHHHHHHHHHHHhCCEEEEeCHHHHHHHHHHHhHH
Confidence 1468888 99885 55443 577777886 45678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhh
Q 024066 151 TMAVSMLGVSEALTLGQSLGISASTLTKILNS 182 (273)
Q Consensus 151 ~~~~~~~~~~Ea~~la~~~Gl~~~~~~~~l~~ 182 (273)
.. ....++++++. .+.+.+.++++...
T Consensus 182 ph-~~a~~l~~~~~----~~~~~~~~~~~~~~ 208 (275)
T PRK08507 182 PH-IISFALANTVL----KEEDERNIFDLAGG 208 (275)
T ss_pred HH-HHHHHHHHHHH----hcCChHHHHhhccc
Confidence 76 44555666652 36666666565543
No 43
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=99.26 E-value=3.1e-10 Score=104.12 Aligned_cols=144 Identities=16% Similarity=0.159 Sum_probs=116.8
Q ss_pred CCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceE
Q 024066 11 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVM 90 (273)
Q Consensus 11 ~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~~g~~~ 90 (273)
+++.+++.+||+||+|+|.+.. .+++.. +.+ + +++++|+|+||+.+...+++.+.+. ..|
T Consensus 134 ~~~~~~~~~aDlVilavP~~~~-~~~~~~---l~~-l--~~~~iv~Dv~SvK~~~~~~~~~~~~-------------~~f 193 (374)
T PRK11199 134 DRAEDILADAGMVIVSVPIHLT-EEVIAR---LPP-L--PEDCILVDLTSVKNAPLQAMLAAHS-------------GPV 193 (374)
T ss_pred hhHHHHHhcCCEEEEeCcHHHH-HHHHHH---HhC-C--CCCcEEEECCCccHHHHHHHHHhCC-------------CCE
Confidence 4678889999999999999865 555543 443 2 4578999999999988888776431 247
Q ss_pred E-EecCCCCHHHHhcCceEEEeec-CHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024066 91 L-DAPVSGGVLAAEAGTLTFMVGG-SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQS 168 (273)
Q Consensus 91 l-dapv~G~~~~a~~g~l~~~vgG-~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~ 168 (273)
+ ..|+.|+......+.+.++++| +++.+++++++++.+|.+++++++.+....+++++-+ .++.+++++..+++
T Consensus 194 vg~HPm~G~~~~~~~~~~vv~~~~~~~~~~~~~~~l~~~lG~~v~~~~~~~HD~~~a~vshL---pH~~a~al~~~l~~- 269 (374)
T PRK11199 194 LGLHPMFGPDVGSLAKQVVVVCDGRQPEAYQWLLEQIQVWGARLHRISAVEHDQNMAFIQAL---RHFATFAYGLHLAK- 269 (374)
T ss_pred EeeCCCCCCCCcccCCCEEEEcCCCCchHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-
Confidence 7 8999998777777788888888 5578899999999999999999999999999999933 88889999999987
Q ss_pred cCCCHHHHHH
Q 024066 169 LGISASTLTK 178 (273)
Q Consensus 169 ~Gl~~~~~~~ 178 (273)
.+++.+.+++
T Consensus 270 ~~~~~~~~~~ 279 (374)
T PRK11199 270 ENVDLEQLLA 279 (374)
T ss_pred cCCCHHHHHH
Confidence 7888777644
No 44
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=99.10 E-value=1.9e-09 Score=94.95 Aligned_cols=118 Identities=17% Similarity=0.223 Sum_probs=83.3
Q ss_pred cccCCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHH-Hhhchhhh
Q 024066 2 FSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAA-VSNCILKE 80 (273)
Q Consensus 2 l~~~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~-~~~~g~~~ 80 (273)
|.+.|++.++|++|++++||+||+|||+++++++|+ +++++++ +.|++|||+||++|.+..++-+. ++-
T Consensus 64 LaeaGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl---~GLaa~L--~~GaIVID~STIsP~t~~~~~e~~l~~----- 133 (341)
T TIGR01724 64 VEDAGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIA---RTIIEHV--PENAVICNTCTVSPVVLYYSLEKILRL----- 133 (341)
T ss_pred HHHCCCeecCCHHHHHhCCCEEEEecCCHHHHHHHH---HHHHhcC--CCCCEEEECCCCCHHHHHHHHHHHhhc-----
Confidence 566799999999999999999999999999999998 3577764 56799999999999999997776 321
Q ss_pred ccCCCCCc-eEEEecCCCCHHHHhcCceEEEeec---------CHHHHHHHHHHHHHhcCCeEEe
Q 024066 81 KKDSWENP-VMLDAPVSGGVLAAEAGTLTFMVGG---------SEDAYQAAKPLFLSMGKNTIYC 135 (273)
Q Consensus 81 ~~g~~~g~-~~ldapv~G~~~~a~~g~l~~~vgG---------~~~~~~~~~~~l~~~~~~i~~~ 135 (273)
++. .-|+ .|=-+.|-|.+.+ . ..+++| +++..+++-++.+..++..|.+
T Consensus 134 ~r~-d~~v~s~HP~~vP~~~~~----~-~~~~~~~~~~~~~~A~ee~i~~~~el~~~~~~~~~~~ 192 (341)
T TIGR01724 134 KRT-DVGISSMHPAAVPGTPQH----G-HYVIGGKPTAGKEMATEEQISKCVELAKSTGKKAYVV 192 (341)
T ss_pred Ccc-ccCeeccCCCCCCCCCCC----c-eeeeccccccccccCCHHHHHHHHHHHHHhCCCeeec
Confidence 110 0011 1222334444432 2 222332 3677888888888898876554
No 45
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.08 E-value=4e-09 Score=98.70 Aligned_cols=154 Identities=18% Similarity=0.248 Sum_probs=116.8
Q ss_pred CCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCC
Q 024066 5 MGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDS 84 (273)
Q Consensus 5 ~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~ 84 (273)
.|+..++++.+++.+||+||+|+|.+ .+.+++.. +.+.+ .++.+|+|++|+.+...+.+.+.+..
T Consensus 44 ~gv~~~~~~~e~~~~aDvVIlavp~~-~~~~vl~~---l~~~l--~~~~iViDvsSvK~~~~~~l~~~~~~--------- 108 (437)
T PRK08655 44 LGVEYANDNIDAAKDADIVIISVPIN-VTEDVIKE---VAPHV--KEGSLLMDVTSVKERPVEAMEEYAPE--------- 108 (437)
T ss_pred cCCeeccCHHHHhccCCEEEEecCHH-HHHHHHHH---HHhhC--CCCCEEEEcccccHHHHHHHHHhcCC---------
Confidence 46777778899999999999999985 55667643 44442 45689999999999988888876532
Q ss_pred CCCceEEEe-cCCCCHHHHhcCceEEEeec---CHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHH
Q 024066 85 WENPVMLDA-PVSGGVLAAEAGTLTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVS 160 (273)
Q Consensus 85 ~~g~~~lda-pv~G~~~~a~~g~l~~~vgG---~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~~~~~~~~~~ 160 (273)
+..|+.+ |+.|.......|+..+++.+ +++.+++++++|+.+|.+++++++. ..-|++.+.....++.+++
T Consensus 109 --~~~~V~~HPmaGp~~~~~~g~~~il~p~~~~~~~~~~~v~~ll~~~G~~v~~~~~e---~HD~~~a~vs~lph~~a~a 183 (437)
T PRK08655 109 --GVEILPTHPMFGPRTPSLKGQVVILTPTEKRSNPWFDKVKNFLEKEGARVIVTSPE---EHDRIMSVVQGLTHFAYIS 183 (437)
T ss_pred --CCEEEEcCCCCCCCCcccCCCEEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHH---HHHHHHHHHHHHHHHHHHH
Confidence 3689998 99987666667887788766 4678899999999999988887654 4456666666777777777
Q ss_pred HHHHHHHHcCCCHHHHHHH
Q 024066 161 EALTLGQSLGISASTLTKI 179 (273)
Q Consensus 161 Ea~~la~~~Gl~~~~~~~~ 179 (273)
.+..+ ++.|++.+.....
T Consensus 184 l~~~l-~~~g~~~~~~~~~ 201 (437)
T PRK08655 184 IASTL-KRLGVDIKESRKF 201 (437)
T ss_pred HHHHH-HHcCCCHHHHHhh
Confidence 66665 6779998775433
No 46
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.03 E-value=3.6e-09 Score=94.78 Aligned_cols=149 Identities=18% Similarity=0.178 Sum_probs=102.6
Q ss_pred CCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCC
Q 024066 8 PTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWEN 87 (273)
Q Consensus 8 ~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~~g 87 (273)
+.++++.+++++||+||+|+|.+.++...++.. +... .++.++|.++|.++.. .++++.+... .+ ..+
T Consensus 68 ~~~~~~~~~~~~aDlVi~av~~~~~~~~~v~~~--l~~~---~~~~~ii~s~tsg~~~-~~l~~~~~~~----~~--~ig 135 (311)
T PRK06130 68 RMEAGLAAAVSGADLVIEAVPEKLELKRDVFAR--LDGL---CDPDTIFATNTSGLPI-TAIAQAVTRP----ER--FVG 135 (311)
T ss_pred EEeCCHHHHhccCCEEEEeccCcHHHHHHHHHH--HHHh---CCCCcEEEECCCCCCH-HHHHhhcCCc----cc--EEE
Confidence 456788888999999999999987654433321 2221 1234566677766653 3666665321 00 002
Q ss_pred ceEEEecCCCCHHHHhcCceEEEeec---CHHHHHHHHHHHHHhcCCeEEeCC--cChHHHHHHHHHHHHHHHHHHHHHH
Q 024066 88 PVMLDAPVSGGVLAAEAGTLTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGG--AGNGAAAKICNNLTMAVSMLGVSEA 162 (273)
Q Consensus 88 ~~~ldapv~G~~~~a~~g~l~~~vgG---~~~~~~~~~~~l~~~~~~i~~~G~--~g~a~~~Kl~~n~~~~~~~~~~~Ea 162 (273)
++|.++|.. +.+..++.| +++.++.++++++.+|+.++++++ +|. ++||++. ..++|+
T Consensus 136 ~h~~~p~~~--------~~l~~i~~g~~t~~~~~~~v~~l~~~~G~~~v~~~~d~~G~-----i~nr~~~----~~~~Ea 198 (311)
T PRK06130 136 THFFTPADV--------IPLVEVVRGDKTSPQTVATTMALLRSIGKRPVLVKKDIPGF-----IANRIQH----ALAREA 198 (311)
T ss_pred EccCCCCcc--------CceEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEEcCCCCCc-----HHHHHHH----HHHHHH
Confidence 444444422 234556666 578999999999999999999985 565 7888753 679999
Q ss_pred HHHHHHcCCCHHHHHHHHhhcCC
Q 024066 163 LTLGQSLGISASTLTKILNSSSA 185 (273)
Q Consensus 163 ~~la~~~Gl~~~~~~~~l~~~~~ 185 (273)
+.++++.|++++++.++++.+.+
T Consensus 199 ~~l~~~g~~~~~~id~~~~~~~g 221 (311)
T PRK06130 199 ISLLEKGVASAEDIDEVVKWSLG 221 (311)
T ss_pred HHHHHcCCCCHHHHHHHHHhcCC
Confidence 99999999999999999986654
No 47
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=98.98 E-value=3.3e-08 Score=87.30 Aligned_cols=128 Identities=18% Similarity=0.235 Sum_probs=94.0
Q ss_pred CHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEE
Q 024066 12 TPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML 91 (273)
Q Consensus 12 s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~~g~~~l 91 (273)
+..+++++||+||+|+|.+.. .+++. .+.+.+ .++.+|+|++++.+...+++.+.. ..|+
T Consensus 50 ~~~~~~~~aDlVilavp~~~~-~~~~~---~l~~~l--~~~~ii~d~~Svk~~~~~~~~~~~--------------~~~v 109 (279)
T PRK07417 50 TDLSLLKDCDLVILALPIGLL-LPPSE---QLIPAL--PPEAIVTDVGSVKAPIVEAWEKLH--------------PRFV 109 (279)
T ss_pred CCHhHhcCCCEEEEcCCHHHH-HHHHH---HHHHhC--CCCcEEEeCcchHHHHHHHHHHhh--------------CCce
Confidence 334678899999999997654 45553 344432 345799999999988766555421 2477
Q ss_pred E-ecCCCCH-HHHhcCceEEEee----------cCHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHH
Q 024066 92 D-APVSGGV-LAAEAGTLTFMVG----------GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGV 159 (273)
Q Consensus 92 d-apv~G~~-~~a~~g~l~~~vg----------G~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~~~~~~~~~ 159 (273)
. .|+.|++ .+.+.+...+|.| ++++.++.++++++.+|.+++++++.+....+|+++|+......+.+
T Consensus 110 ~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~~~~~~~~v~~l~~~lG~~~v~~~~~~hD~~~a~~shlp~~~a~~l~ 189 (279)
T PRK07417 110 GSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENTDLNALAIVEELAVSLGSKIYTADPEEHDRAVALISHLPVMVSAALI 189 (279)
T ss_pred eeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCCCHHHHHHHHHHHHHcCCEEEEcCHHHHHHHHHHHcchHHHHHHHHH
Confidence 7 6999986 4555444333333 57788999999999999999999999999999999998877654443
No 48
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=98.96 E-value=7.4e-09 Score=92.11 Aligned_cols=145 Identities=17% Similarity=0.162 Sum_probs=103.1
Q ss_pred CCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEE-EcCCCCHHHHHHHHHHHhhchhhhccCCCCC
Q 024066 9 TKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWEN 87 (273)
Q Consensus 9 ~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iii-d~ST~~P~~~~~l~~~~~~~g~~~~~g~~~g 87 (273)
...+..+++++||+||.||+++.+++..+++. +.+.. +++.+|+ ++||+++.+.++....-.. ..+
T Consensus 73 ~~~~~~~~~~~aD~Vieav~e~~~~k~~v~~~--l~~~~--~~~~il~s~tS~i~~~~l~~~~~~~~r---------~~g 139 (295)
T PLN02545 73 RCTTNLEELRDADFIIEAIVESEDLKKKLFSE--LDRIC--KPSAILASNTSSISITRLASATQRPQQ---------VIG 139 (295)
T ss_pred EeeCCHHHhCCCCEEEEcCccCHHHHHHHHHH--HHhhC--CCCcEEEECCCCCCHHHHHhhcCCCcc---------eEE
Confidence 34445577899999999999999998887653 44332 3455665 9999998876554331110 113
Q ss_pred ceEEEecCCCCHHHHhcCceEEEeec---CHHHHHHHHHHHHHhcCCeEEeCC-cChHHHHHHHHHHHHHHHHHHHHHHH
Q 024066 88 PVMLDAPVSGGVLAAEAGTLTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEAL 163 (273)
Q Consensus 88 ~~~ldapv~G~~~~a~~g~l~~~vgG---~~~~~~~~~~~l~~~~~~i~~~G~-~g~a~~~Kl~~n~~~~~~~~~~~Ea~ 163 (273)
++|.++|..+ .++.++.| +++++++++++|+.+|+.++++++ +| .++|+++. ..++|++
T Consensus 140 ~h~~~pp~~~--------~lveiv~g~~t~~e~~~~~~~ll~~lG~~~~~~~d~~g-----~i~nri~~----~~~~ea~ 202 (295)
T PLN02545 140 MHFMNPPPIM--------KLVEIIRGADTSDEVFDATKALAERFGKTVVCSQDYPG-----FIVNRILM----PMINEAF 202 (295)
T ss_pred EeccCCcccC--------ceEEEeCCCCCCHHHHHHHHHHHHHcCCeeEEecCccc-----HHHHHHHH----HHHHHHH
Confidence 7899999864 44566654 788999999999999999999988 56 34555443 4589999
Q ss_pred HHHHHcCCCHHHHHHHHhhc
Q 024066 164 TLGQSLGISASTLTKILNSS 183 (273)
Q Consensus 164 ~la~~~Gl~~~~~~~~l~~~ 183 (273)
.+.++...+++++=..+..+
T Consensus 203 ~~~~~gv~~~~~iD~~~~~g 222 (295)
T PLN02545 203 YALYTGVASKEDIDTGMKLG 222 (295)
T ss_pred HHHHcCCCCHHHHHHHHHhc
Confidence 99998778888765555433
No 49
>PF00984 UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenase family, central domain; InterPro: IPR014026 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents an alpha helical region that serves as the dimerisation interface for these enzymes [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2O3J_A 3OJO_A 3OJL_A 3PLR_A 3PJG_A 3PID_A 3PLN_A 3PHL_A 3TDK_B 2Q3E_A ....
Probab=98.82 E-value=8.5e-08 Score=70.79 Aligned_cols=93 Identities=22% Similarity=0.213 Sum_probs=74.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhH
Q 024066 139 GNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLM 218 (273)
Q Consensus 139 g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 218 (273)
..|..+|++.|.+....++.++|...+|++.|+|..++.+.++... ++.. ..+ .-.++|...++
T Consensus 2 ~~AEl~K~~~N~~~a~~iaf~Nel~~lce~~giD~~~V~~~~~~d~---ri~~------~~~-------~pg~g~GG~Cl 65 (96)
T PF00984_consen 2 EEAELIKYAENAFRATKIAFANELARLCEKLGIDVYEVIEAANTDP---RIGP------HYL-------RPGPGFGGSCL 65 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSBHHHHHHHHHTST---TTTS------SS--------S-SSS--SSCH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHccCc---cccc------ccC-------CCCCCCCCcch
Confidence 3689999999999999999999999999999999999999998742 1110 000 01235778899
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 024066 219 AKDLNLALASAKEVGVDCPLTSQAQDIYA 247 (273)
Q Consensus 219 ~KD~~~~~~~a~~~g~~~~~~~~~~~~~~ 247 (273)
.||...+...+++.|.+..+++++.+.-+
T Consensus 66 pkD~~~L~~~~~~~g~~~~ll~~~~~~N~ 94 (96)
T PF00984_consen 66 PKDPYALIYLAKELGYPPQLLEAVININE 94 (96)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHcCCCHHHHHHHHHhcC
Confidence 99999999999999999999999887654
No 50
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.79 E-value=6.2e-08 Score=86.07 Aligned_cols=147 Identities=18% Similarity=0.145 Sum_probs=98.4
Q ss_pred CCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEE-EcCCCCHHHHHHHHHHHhhchhhhccCCC
Q 024066 7 VPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSW 85 (273)
Q Consensus 7 a~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iii-d~ST~~P~~~~~l~~~~~~~g~~~~~g~~ 85 (273)
.+.+++.. .+++||+||.|+|++.+++..++. ++.+.+ +.+++|+ ++||+++. ++++.+... .+ .
T Consensus 72 i~~~~~~~-~~~~aD~Vieavpe~~~~k~~~~~--~l~~~~--~~~~ii~s~ts~~~~s---~la~~~~~~---~r---~ 137 (292)
T PRK07530 72 ISTATDLE-DLADCDLVIEAATEDETVKRKIFA--QLCPVL--KPEAILATNTSSISIT---RLASATDRP---ER---F 137 (292)
T ss_pred eEeeCCHH-HhcCCCEEEEcCcCCHHHHHHHHH--HHHhhC--CCCcEEEEcCCCCCHH---HHHhhcCCc---cc---E
Confidence 34566764 578999999999998887666553 354442 3456666 78887775 466654210 00 1
Q ss_pred CCceEEE-ecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHH
Q 024066 86 ENPVMLD-APVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALT 164 (273)
Q Consensus 86 ~g~~~ld-apv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~ 164 (273)
.|++|++ +|+++.. .+..-.+++++++++++++++.+|+.++++++.+ -|++|+++ ...+.|++.
T Consensus 138 ~g~h~~~p~~~~~~v------ei~~g~~t~~~~~~~~~~~~~~~gk~~v~~~d~p----g~i~nRl~----~~~~~ea~~ 203 (292)
T PRK07530 138 IGIHFMNPVPVMKLV------ELIRGIATDEATFEAAKEFVTKLGKTITVAEDFP----AFIVNRIL----LPMINEAIY 203 (292)
T ss_pred EEeeccCCcccCceE------EEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCcC----ChHHHHHH----HHHHHHHHH
Confidence 1378888 5555332 1222246889999999999999999999998844 57777775 455788888
Q ss_pred HHHHcCCCHHHHHHHHh
Q 024066 165 LGQSLGISASTLTKILN 181 (273)
Q Consensus 165 la~~~Gl~~~~~~~~l~ 181 (273)
+.++-=.+++++=.++.
T Consensus 204 ~~~~g~~~~~~iD~~~~ 220 (292)
T PRK07530 204 TLYEGVGSVEAIDTAMK 220 (292)
T ss_pred HHHhCCCCHHHHHHHHH
Confidence 88883336776544544
No 51
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.76 E-value=1.6e-07 Score=81.96 Aligned_cols=144 Identities=17% Similarity=0.153 Sum_probs=100.1
Q ss_pred CCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCC
Q 024066 6 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSW 85 (273)
Q Consensus 6 Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~ 85 (273)
|++.++++.++++++|+||+|++ ++++.+++.. + . . .++++||+ +..+-+.+.+.+.+...
T Consensus 48 ~~~~~~~~~~~~~~aDvVilav~-p~~~~~vl~~---l-~-~--~~~~~vis--~~ag~~~~~l~~~~~~~--------- 108 (258)
T PRK06476 48 KVRIAKDNQAVVDRSDVVFLAVR-PQIAEEVLRA---L-R-F--RPGQTVIS--VIAATDRAALLEWIGHD--------- 108 (258)
T ss_pred CceEeCCHHHHHHhCCEEEEEeC-HHHHHHHHHH---h-c-c--CCCCEEEE--ECCCCCHHHHHHHhCCC---------
Confidence 56778899999999999999999 6778888853 2 1 1 24567776 44556666777766421
Q ss_pred CCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHH-----HHHHHHHHHH
Q 024066 86 ENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNL-----TMAVSMLGVS 160 (273)
Q Consensus 86 ~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~-----~~~~~~~~~~ 160 (273)
...+...|.. +.+....++.+++++ +.++++|+.+|..++ +++. |..+++ +....+..+.
T Consensus 109 -~~~~r~~P~~---~~a~~~g~t~~~~~~----~~~~~l~~~lG~~~~-~~~e------~~~d~~~a~~s~~a~~~~~~~ 173 (258)
T PRK06476 109 -VKLVRAIPLP---FVAERKGVTAIYPPD----PFVAALFDALGTAVE-CDSE------EEYDLLAAASALMATYFGILE 173 (258)
T ss_pred -CCEEEECCCC---hhhhCCCCeEecCCH----HHHHHHHHhcCCcEE-ECCh------HhccceeehhccHHHHHHHHH
Confidence 1457788883 333333446666664 578999999998654 6533 333333 4455556778
Q ss_pred HHHHHHHHcCCCHHHHHHHHhhc
Q 024066 161 EALTLGQSLGISASTLTKILNSS 183 (273)
Q Consensus 161 Ea~~la~~~Gl~~~~~~~~l~~~ 183 (273)
++..++++.|+++++..+++...
T Consensus 174 ~~~~~~~~~Gl~~~~a~~~~~~~ 196 (258)
T PRK06476 174 TATGWLEEQGLKRQKARAYLAPL 196 (258)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHH
Confidence 88899999999999988888754
No 52
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=98.66 E-value=1.7e-06 Score=75.88 Aligned_cols=197 Identities=14% Similarity=0.190 Sum_probs=136.2
Q ss_pred CCCHHHHHhcCCEEEEeCCChHHHHH-----------HHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchh
Q 024066 10 KETPFEVAEASDVVITMLPSSSHVLD-----------VYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCIL 78 (273)
Q Consensus 10 ~~s~~e~~~~advvi~~v~~~~av~~-----------v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~ 78 (273)
.++...++..+|+||++|-+|.-... +-....-+.+. ..+.+++++-||+...+++.+...+...
T Consensus 69 stdiekai~eadlvfisvntptkt~g~gkg~aadlky~es~ar~ia~~--s~~~kivvekstvpv~aaesi~~il~~n-- 144 (481)
T KOG2666|consen 69 STDIEKAIKEADLVFISVNTPTKTYGLGKGKAADLKYWESAARMIADV--SVSDKIVVEKSTVPVKAAESIEKILNHN-- 144 (481)
T ss_pred ecchHHHhhhcceEEEEecCCcccccCCCCcccchhHHHHHHHHHHHh--ccCCeEEEeeccccchHHHHHHHHHhcC--
Confidence 45678899999999999988753211 10000112222 2356899999999999999999988421
Q ss_pred hhccCCCCCceEEEecCCCCHHHHhcCce--------EEEeecCH--HH---HHHHHHHHHHhcCC-eEEeCCcChHHHH
Q 024066 79 KEKKDSWENPVMLDAPVSGGVLAAEAGTL--------TFMVGGSE--DA---YQAAKPLFLSMGKN-TIYCGGAGNGAAA 144 (273)
Q Consensus 79 ~~~~g~~~g~~~ldapv~G~~~~a~~g~l--------~~~vgG~~--~~---~~~~~~~l~~~~~~-i~~~G~~g~a~~~ 144 (273)
+. |+.| .|...|.-..+|+. .+++||++ +- .+.+..+++.+-.+ -+..-..=++..-
T Consensus 145 --~~----~i~f---qilsnpeflaegtaikdl~npdrvligg~etpeg~~av~~l~~vyehwvp~~~iittntwssels 215 (481)
T KOG2666|consen 145 --SK----GIKF---QILSNPEFLAEGTAIKDLFNPDRVLIGGRETPEGFQAVQALKDVYEHWVPREQIITTNTWSSELS 215 (481)
T ss_pred --CC----Ccee---EeccChHHhcccchhhhhcCCceEEECCCCChhHHHHHHHHHHHHHhhCcccceeeccccHHHHH
Confidence 22 2332 34444444444443 58999963 43 44556667776543 2223446789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHH
Q 024066 145 KICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNL 224 (273)
Q Consensus 145 Kl~~n~~~~~~~~~~~Ea~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~ 224 (273)
||+.|.+++--+..++-.-++|++.|-|..++...+... +.+.. +.+ +-+.+|..+++.||+-.
T Consensus 216 klaanaflaqrissins~salceatgadv~eva~avg~d---~rig~------kfl-------~asvgfggscfqkdiln 279 (481)
T KOG2666|consen 216 KLAANAFLAQRISSINSMSALCEATGADVSEVAYAVGTD---SRIGS------KFL-------NASVGFGGSCFQKDILN 279 (481)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhcCCCHHHHHHHhccc---ccccH------HHh-------hcccCcCchhHHHHHHH
Confidence 999999999999999999999999999999988777543 22211 111 11457899999999999
Q ss_pred HHHHHHHhCCC
Q 024066 225 ALASAKEVGVD 235 (273)
Q Consensus 225 ~~~~a~~~g~~ 235 (273)
.+-.++.+|+|
T Consensus 280 lvyice~lnlp 290 (481)
T KOG2666|consen 280 LVYICECLNLP 290 (481)
T ss_pred HHHHHhcCCCh
Confidence 99999999876
No 53
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.60 E-value=4.4e-07 Score=80.41 Aligned_cols=147 Identities=14% Similarity=0.027 Sum_probs=105.8
Q ss_pred CCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCC-CCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCC
Q 024066 9 TKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNS-VRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWEN 87 (273)
Q Consensus 9 ~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~-~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~~g 87 (273)
.+++. +.+++||+||-|+|++.+++..+++ .++.. . +++.+++..||+.|-+.........++ .-|
T Consensus 75 ~~~~~-~~~~~~d~ViEav~E~~~~K~~l~~---~l~~~-~~~~~~il~snTS~~~~~~la~~~~~~~r--------~~g 141 (286)
T PRK07819 75 FTTDL-GDFADRQLVIEAVVEDEAVKTEIFA---ELDKV-VTDPDAVLASNTSSIPIMKLAAATKRPGR--------VLG 141 (286)
T ss_pred eeCCH-HHhCCCCEEEEecccCHHHHHHHHH---HHHHh-hCCCCcEEEECCCCCCHHHHHhhcCCCcc--------EEE
Confidence 57777 6689999999999999999988875 33322 2 356788887777777765543332221 013
Q ss_pred ceEEE-ecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHH-HhcCCeEEeCC-cChHHHHHHHHHHHHHHHHHHHHHHHH
Q 024066 88 PVMLD-APVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFL-SMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEALT 164 (273)
Q Consensus 88 ~~~ld-apv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~-~~~~~i~~~G~-~g~a~~~Kl~~n~~~~~~~~~~~Ea~~ 164 (273)
.+|.+ +|+++.+ ++....++++++++++.+++. .+++..+++++ +|- +.|-+ ....++|++.
T Consensus 142 ~hf~~P~~~~~lv------Elv~~~~T~~~~~~~~~~~~~~~lgk~pv~v~d~pGf------i~nRi---~~~~~~Ea~~ 206 (286)
T PRK07819 142 LHFFNPVPVLPLV------ELVPTLVTSEATVARAEEFASDVLGKQVVRAQDRSGF------VVNAL---LVPYLLSAIR 206 (286)
T ss_pred EecCCCcccCceE------EEeCCCCCCHHHHHHHHHHHHHhCCCCceEecCCCCh------HHHHH---HHHHHHHHHH
Confidence 78888 6788776 677778889999999999988 59999999988 762 33433 3567789999
Q ss_pred HHHHcCCCHHHHHHHHhhc
Q 024066 165 LGQSLGISASTLTKILNSS 183 (273)
Q Consensus 165 la~~~Gl~~~~~~~~l~~~ 183 (273)
+.++.-.+++++=.++..+
T Consensus 207 ll~eGv~~~~dID~~~~~g 225 (286)
T PRK07819 207 MVESGFATAEDIDKAMVLG 225 (286)
T ss_pred HHHhCCCCHHHHHHHHHhC
Confidence 8887666788765555444
No 54
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=98.51 E-value=2.9e-05 Score=69.46 Aligned_cols=124 Identities=10% Similarity=0.173 Sum_probs=85.1
Q ss_pred CCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCc
Q 024066 9 TKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENP 88 (273)
Q Consensus 9 ~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~~g~ 88 (273)
.+.++.+++++||+||+|+|.+. ..+++.. +.+.+ ..+.+|+|++++.+...+++.+.+.. ++
T Consensus 56 ~~~~~~~~~~~aDvViiavp~~~-~~~v~~~---l~~~l--~~~~iv~dvgs~k~~~~~~~~~~~~~-----------~~ 118 (307)
T PRK07502 56 VTTSAAEAVKGADLVILCVPVGA-SGAVAAE---IAPHL--KPGAIVTDVGSVKASVIAAMAPHLPE-----------GV 118 (307)
T ss_pred ecCCHHHHhcCCCEEEECCCHHH-HHHHHHH---HHhhC--CCCCEEEeCccchHHHHHHHHHhCCC-----------CC
Confidence 45678888999999999999864 4556542 33322 34578999999998888777655421 36
Q ss_pred eEEEe-cCCCCHH-HHh-------cCceEEEe---ecCHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHH
Q 024066 89 VMLDA-PVSGGVL-AAE-------AGTLTFMV---GGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNN 149 (273)
Q Consensus 89 ~~lda-pv~G~~~-~a~-------~g~l~~~v---gG~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n 149 (273)
+|+.+ |+.|+.. +.. .|...+++ +++++.++.++++++.+|.+++++++-..-..+=++..
T Consensus 119 ~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~~~~~~~~~~~l~~~lG~~~~~~~~~~hD~~~A~~s~ 191 (307)
T PRK07502 119 HFIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEGTDPAAVARLTAFWRALGARVEEMDPEHHDLVLAITSH 191 (307)
T ss_pred eEEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEcCHHHHhHHHHHHhh
Confidence 89997 9988542 222 23323333 56788999999999999999888876444444434433
No 55
>PRK07680 late competence protein ComER; Validated
Probab=98.51 E-value=3.3e-06 Score=74.29 Aligned_cols=153 Identities=15% Similarity=0.142 Sum_probs=97.1
Q ss_pred CCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCC
Q 024066 6 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSW 85 (273)
Q Consensus 6 Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~ 85 (273)
|++...++.+++.++|+||+|+++ .++.+++.. +.+.+ .++++||+++..- ..+++.+++..+
T Consensus 49 g~~~~~~~~~~~~~aDiVilav~p-~~~~~vl~~---l~~~l--~~~~~iis~~ag~--~~~~L~~~~~~~--------- 111 (273)
T PRK07680 49 GIHVAKTIEEVISQSDLIFICVKP-LDIYPLLQK---LAPHL--TDEHCLVSITSPI--SVEQLETLVPCQ--------- 111 (273)
T ss_pred CeEEECCHHHHHHhCCEEEEecCH-HHHHHHHHH---HHhhc--CCCCEEEEECCCC--CHHHHHHHcCCC---------
Confidence 677788999999999999999984 567888753 44432 2457889888643 355565554321
Q ss_pred CCceEEEecCCCCHHHHhcCceEEEee--cCHHHHHHHHHHHHHhcCCeEEeCC-cChHH-HHHHHHHHHHHHHHHHHHH
Q 024066 86 ENPVMLDAPVSGGVLAAEAGTLTFMVG--GSEDAYQAAKPLFLSMGKNTIYCGG-AGNGA-AAKICNNLTMAVSMLGVSE 161 (273)
Q Consensus 86 ~g~~~ldapv~G~~~~a~~g~l~~~vg--G~~~~~~~~~~~l~~~~~~i~~~G~-~g~a~-~~Kl~~n~~~~~~~~~~~E 161 (273)
.++++. +.+..+..|...++.| .+++.++.++++|+.+|. .+++.+ .-.+. .+=-+.-.+....+.++.+
T Consensus 112 -~~r~~p----~~~~~~~~G~t~~~~g~~~~~~~~~~~~~ll~~~G~-~~~i~e~~~~~~~~l~gs~pa~~~~~~~al~~ 185 (273)
T PRK07680 112 -VARIIP----SITNRALSGASLFTFGSRCSEEDQQKLERLFSNIST-PLVIEEDITRVSSDIVSCGPAFFSYLLQRFID 185 (273)
T ss_pred -EEEECC----ChHHHHhhccEEEeeCCCCCHHHHHHHHHHHHcCCC-EEEEChHhcchhhhhccchHHHHHHHHHHHHH
Confidence 134543 3455566788666666 356778999999999995 677765 22222 1111122344444455555
Q ss_pred HHHHHHHcCCCHHHHHHHHhhc
Q 024066 162 ALTLGQSLGISASTLTKILNSS 183 (273)
Q Consensus 162 a~~la~~~Gl~~~~~~~~l~~~ 183 (273)
+. .++.|++.++..+++...
T Consensus 186 ~~--~~~~Gl~~~~a~~~~~~~ 205 (273)
T PRK07680 186 AA--VEETNISKEEATTLASEM 205 (273)
T ss_pred HH--HHhcCCCHHHHHHHHHHH
Confidence 43 244899999877776654
No 56
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.50 E-value=5.6e-07 Score=79.90 Aligned_cols=147 Identities=14% Similarity=0.125 Sum_probs=98.2
Q ss_pred CCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCce
Q 024066 10 KETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPV 89 (273)
Q Consensus 10 ~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~~g~~ 89 (273)
.++. +++++||+||.|+|.+..++..++.. +.+.. +++.+++ |+++.-...++++.+... .+ .-|.+
T Consensus 77 ~~~~-~~~~~aDlVieav~e~~~~k~~~~~~--l~~~~--~~~~il~--S~tsg~~~~~la~~~~~~---~r---~ig~h 143 (291)
T PRK06035 77 STSY-ESLSDADFIVEAVPEKLDLKRKVFAE--LERNV--SPETIIA--SNTSGIMIAEIATALERK---DR---FIGMH 143 (291)
T ss_pred eCCH-HHhCCCCEEEEcCcCcHHHHHHHHHH--HHhhC--CCCeEEE--EcCCCCCHHHHHhhcCCc---cc---EEEEe
Confidence 3444 67899999999999998766655431 33321 3444544 334434555777766321 00 11377
Q ss_pred EEE-ecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024066 90 MLD-APVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQS 168 (273)
Q Consensus 90 ~ld-apv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~ 168 (273)
|.+ +|+++... +..|..+ ++++++++.++++.+++.++++++.+....-|+++|+ +.|++.+.+.
T Consensus 144 f~~P~~~~~~vE-v~~g~~T-----~~e~~~~~~~~~~~lgk~~v~v~d~pgfv~nRl~~~~--------~~ea~~~~~~ 209 (291)
T PRK06035 144 WFNPAPVMKLIE-VVRAALT-----SEETFNTTVELSKKIGKIPIEVADVPGFFTTRFIEGW--------LLEAIRSFEI 209 (291)
T ss_pred cCCCcccCccEE-EeCCCCC-----CHHHHHHHHHHHHHcCCeEEEeCCCCCeeHHHHHHHH--------HHHHHHHHHc
Confidence 888 77887754 3344443 7899999999999999999999997778888998885 5677888766
Q ss_pred cCCCHHHHHHHHhhc
Q 024066 169 LGISASTLTKILNSS 183 (273)
Q Consensus 169 ~Gl~~~~~~~~l~~~ 183 (273)
--.+++++=.++..+
T Consensus 210 g~a~~~~iD~~~~~~ 224 (291)
T PRK06035 210 GIATIKDIDEMCKLA 224 (291)
T ss_pred CCCCHHHHHHHHhhc
Confidence 335677754454443
No 57
>PRK06545 prephenate dehydrogenase; Validated
Probab=98.49 E-value=3.6e-06 Score=76.97 Aligned_cols=147 Identities=12% Similarity=0.129 Sum_probs=99.0
Q ss_pred CCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCccc-CCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCc
Q 024066 10 KETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQ-GGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENP 88 (273)
Q Consensus 10 ~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~-~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~~g~ 88 (273)
.+++.+++++||+||+|+|.. .+.+++.. +.+ .+ .++.+|.|.+++.....+++.+.+.. +.
T Consensus 51 ~~~~~~~~~~aDlVilavP~~-~~~~vl~~---l~~~~l--~~~~ivtDv~SvK~~i~~~~~~~~~~-----------~~ 113 (359)
T PRK06545 51 AADLQRAAAEADLIVLAVPVD-ATAALLAE---LADLEL--KPGVIVTDVGSVKGAILAEAEALLGD-----------LI 113 (359)
T ss_pred ccCHHHHhcCCCEEEEeCCHH-HHHHHHHH---HhhcCC--CCCcEEEeCccccHHHHHHHHHhcCC-----------CC
Confidence 356788899999999999985 66778753 332 12 34579999999999888877765321 26
Q ss_pred eEEE-ecCCCCHH--------HHhcCceEEEee---cCHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHH
Q 024066 89 VMLD-APVSGGVL--------AAEAGTLTFMVG---GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSM 156 (273)
Q Consensus 89 ~~ld-apv~G~~~--------~a~~g~l~~~vg---G~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~~~~~~ 156 (273)
.|+. .|+.|+.. ..-.|...+++. .+++.++.++++++.+|..++++.+-..-..+-++..+-..
T Consensus 114 ~~ig~HPMaG~e~sG~~aa~~~lf~g~~~il~~~~~~~~~~~~~v~~l~~~lGa~~v~~~~~~HD~~~A~vshlPh~--- 190 (359)
T PRK06545 114 RFVGGHPMAGSHKSGVAAARADLFENAPWVLTPDDHTDPDAVAELKDLLSGTGAKFVVLDAEEHDRAVALVSHLPHI--- 190 (359)
T ss_pred eEEeeCCcCcCchhhHHHhcHHHHCCCcEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHhHHHhHhccHHHH---
Confidence 7998 69988731 222344456665 46788999999999999988889765555555555444332
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHH
Q 024066 157 LGVSEALTLGQSLGISASTLTKIL 180 (273)
Q Consensus 157 ~~~~Ea~~la~~~Gl~~~~~~~~l 180 (273)
+++++ +...+.+.+....+.
T Consensus 191 --ia~al--~~~~~~~~~~~~~la 210 (359)
T PRK06545 191 --LASSL--AARLAGEHPLALRLA 210 (359)
T ss_pred --HHHHH--HHhhccCchHHHhhh
Confidence 22222 566666665544443
No 58
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.32 E-value=2.7e-05 Score=68.12 Aligned_cols=209 Identities=15% Similarity=0.166 Sum_probs=122.7
Q ss_pred CCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCC
Q 024066 6 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSW 85 (273)
Q Consensus 6 Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~ 85 (273)
|....+++.+++.++|+||+|++++ ++++++.. +.+. . +++||.++..-+. ..+.+.+..
T Consensus 49 g~~~~~~~~~~~~~advVil~v~~~-~~~~v~~~---l~~~---~-~~~vvs~~~gi~~--~~l~~~~~~---------- 108 (267)
T PRK11880 49 GVRAATDNQEAAQEADVVVLAVKPQ-VMEEVLSE---LKGQ---L-DKLVVSIAAGVTL--ARLERLLGA---------- 108 (267)
T ss_pred CCeecCChHHHHhcCCEEEEEcCHH-HHHHHHHH---HHhh---c-CCEEEEecCCCCH--HHHHHhcCC----------
Confidence 6777889999999999999999865 67888753 3332 1 3466655554443 234444321
Q ss_pred CCceEEEecCCCCHHHHhcCceEEEeec--CHHHHHHHHHHHHHhcCCeEEeCC-c--ChHHHHHHHHHHHHHHHHHHHH
Q 024066 86 ENPVMLDAPVSGGVLAAEAGTLTFMVGG--SEDAYQAAKPLFLSMGKNTIYCGG-A--GNGAAAKICNNLTMAVSMLGVS 160 (273)
Q Consensus 86 ~g~~~ldapv~G~~~~a~~g~l~~~vgG--~~~~~~~~~~~l~~~~~~i~~~G~-~--g~a~~~Kl~~n~~~~~~~~~~~ 160 (273)
+.+++. -+...|.....+...++.+. +++.++.++.+|+.+|. .+++.+ . -.+..+ ..+ .-..+..+.
T Consensus 109 -~~~iv~-~~P~~p~~~~~~~~~i~~~~~~~~~~~~~v~~l~~~lG~-~~~~~~e~~~d~~~a~--~~~--~pa~~~~~~ 181 (267)
T PRK11880 109 -DLPVVR-AMPNTPALVGAGMTALTANALVSAEDRELVENLLSAFGK-VVWVDDEKQMDAVTAV--SGS--GPAYVFLFI 181 (267)
T ss_pred -CCcEEE-ecCCchHHHcCceEEEecCCCCCHHHHHHHHHHHHhCCe-EEEECChHhcchHHHH--hcC--hHHHHHHHH
Confidence 134444 23344555555554455554 67889999999999997 667763 2 222211 111 111233445
Q ss_pred HHHH-HHHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCC--cchhhHHHHHHHHHHHHHHhCCCCh
Q 024066 161 EALT-LGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG--FASKLMAKDLNLALASAKEVGVDCP 237 (273)
Q Consensus 161 Ea~~-la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~--f~~~~~~KD~~~~~~~a~~~g~~~~ 237 (273)
|++. .+.+.|+++++..+++....-+. .+ ++. ..+.+... -.+..-..-....++.+++.|++-.
T Consensus 182 ~~~~~~~~~~Gl~~~~a~~~~~~~~~g~--~~-------~~~---~~~~~~~~l~~~v~tpgG~t~~gl~~l~~~g~~~~ 249 (267)
T PRK11880 182 EALADAGVKLGLPREQARKLAAQTVLGA--AK-------LLL---ESGEHPAELRDNVTSPGGTTIAALRVLEEKGLRAA 249 (267)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHH--HH-------HHH---hcCCCHHHHHHhCCCCcHHHHHHHHHHHHCCHHHH
Confidence 5554 46779999999888776642111 01 110 01111000 0111112234567778888999999
Q ss_pred HHHHHHHHHHHHHHCC
Q 024066 238 LTSQAQDIYAKLCENG 253 (273)
Q Consensus 238 ~~~~~~~~~~~a~~~G 253 (273)
+.++..+.++++.+.+
T Consensus 250 ~~~a~~~~~~ra~~~~ 265 (267)
T PRK11880 250 VIEAVQAAAKRSKELG 265 (267)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999998754
No 59
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.12 E-value=7.4e-05 Score=67.90 Aligned_cols=234 Identities=13% Similarity=0.112 Sum_probs=127.2
Q ss_pred CCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcC-CCCHHHHHHHHHHHhhchhhhccCCCC
Q 024066 8 PTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSS-TIDPQTSRNISAAVSNCILKEKKDSWE 86 (273)
Q Consensus 8 ~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~S-T~~P~~~~~l~~~~~~~g~~~~~g~~~ 86 (273)
...+++.++++++|+||+|+|. ..+++++.. +.+.+ .+..++|.++ .+.+++.+.+.+.+.+. + ++ .
T Consensus 66 ~~t~d~~~a~~~aDlVilavps-~~~~~vl~~---i~~~l--~~~~~vIsl~kGi~~~t~~~~se~i~~~-l---~~--~ 133 (341)
T PRK12439 66 RATTDFAEAANCADVVVMGVPS-HGFRGVLTE---LAKEL--RPWVPVVSLVKGLEQGTNMRMSQIIEEV-L---PG--H 133 (341)
T ss_pred EEECCHHHHHhcCCEEEEEeCH-HHHHHHHHH---HHhhc--CCCCEEEEEEeCCcCCCCCcHHHHHHHH-c---CC--C
Confidence 4566788899999999999995 467888764 33322 2233444444 44444444444444331 0 00 0
Q ss_pred CceEEEecCCCCHHHHhcCceE-EEeec-CHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHH------------
Q 024066 87 NPVMLDAPVSGGVLAAEAGTLT-FMVGG-SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM------------ 152 (273)
Q Consensus 87 g~~~ldapv~G~~~~a~~g~l~-~~vgG-~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~~------------ 152 (273)
....+-.| +-......|..+ +.+++ +++..+.++.+|..-+-+++...++-.-+..|.+-|.+.
T Consensus 134 ~~~~l~GP--~~a~ev~~g~~t~~via~~~~~~~~~v~~lf~~~~~~v~~s~Di~gve~~~alkNv~aia~G~~~g~~~g 211 (341)
T PRK12439 134 PAGILAGP--NIAREVAEGYAAAAVLAMPDQHLATRLSPLFRTRRFRVYTTDDVVGVEMAGALKNVFAIAVGMGYSLGIG 211 (341)
T ss_pred CeEEEECC--CHHHHHHcCCCeEEEEEeCCHHHHHHHHHHhCCCCEEEEEcCchHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 02223333 111222235433 33344 445556666666554433443344555666666655543
Q ss_pred -----HHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCcccccccCCCCC--CcccCCCCCCCCCCCcchhh--------
Q 024066 153 -----AVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVP--GVMEGVPASRNYGGGFASKL-------- 217 (273)
Q Consensus 153 -----~~~~~~~~Ea~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~--~~~~~~~~~~~~~~~f~~~~-------- 217 (273)
.....++.|+..++++.|.++++++....-+ + .+..-..+.. ..+...+..| .+++-
T Consensus 212 ~n~~aali~~~~~E~~~~~~a~G~~~~t~~gl~G~G--D-l~~Tc~s~~sRN~~~G~~l~~g-----~~~~~~~~~~~~~ 283 (341)
T PRK12439 212 ENTRAMVIARALREMTKLGVAMGGNPETFAGLAGMG--D-LIVTCTSQRSRNRHVGEQLGAG-----KPIDEIIASMNQV 283 (341)
T ss_pred chHHHHHHHHHHHHHHHHHHHhCCCcccccccchhh--h-hhhhccCCCCccHHHHHHHHCC-----CCHHHHHHhcCCE
Confidence 3345678899999999999998876532211 0 0000000000 0000011111 11111
Q ss_pred --HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCCCCCCcHHHHHHHHhcCC
Q 024066 218 --MAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGK 270 (273)
Q Consensus 218 --~~KD~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~G~g~~d~sai~~~~~~~~ 270 (273)
-..-.+.+.+++++.++++|+++.+.+++ |++.|...+++.+..++
T Consensus 284 ~EG~~~~~~~~~~~~~~~~~~Pi~~~~~~il-------~~~~~~~~~~~~l~~~~ 331 (341)
T PRK12439 284 AEGVKAASVVMEFADEYGLNMPIAREVDAVI-------NHGSTVEQAYRGLIAEV 331 (341)
T ss_pred EehHHHHHHHHHHHHHhCCCCCHHHHHHHHH-------hCCCCHHHHHHHHhcCC
Confidence 24456677889999999999999999887 67788888887775543
No 60
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.98 E-value=7.5e-05 Score=65.95 Aligned_cols=146 Identities=15% Similarity=0.101 Sum_probs=92.5
Q ss_pred CCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCC
Q 024066 8 PTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWEN 87 (273)
Q Consensus 8 ~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~~g 87 (273)
+.+++.. .+++||+||.|+|.+..++..++. .+.+.. +++ .+|.++|.+...+ ++++.+... ...-+
T Consensus 72 ~~~~~~~-~~~~aDlVi~av~e~~~~k~~~~~--~l~~~~--~~~-~il~s~ts~~~~~-~la~~~~~~------~r~ig 138 (282)
T PRK05808 72 TGTTDLD-DLKDADLVIEAATENMDLKKKIFA--QLDEIA--KPE-AILATNTSSLSIT-ELAAATKRP------DKVIG 138 (282)
T ss_pred EEeCCHH-HhccCCeeeecccccHHHHHHHHH--HHHhhC--CCC-cEEEECCCCCCHH-HHHHhhCCC------cceEE
Confidence 3455654 478999999999987777644432 244432 343 4556777776666 677766321 11113
Q ss_pred ceEEE-ecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCCeEEeCC-cChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024066 88 PVMLD-APVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEALTL 165 (273)
Q Consensus 88 ~~~ld-apv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~i~~~G~-~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l 165 (273)
.+|.. +++..... ...| -+.+++.++.++++++.+|+.++++++ +| .+.|-+ ....++|++.+
T Consensus 139 ~h~~~P~~~~~~ve-v~~g-----~~t~~e~~~~~~~l~~~lGk~pv~~~d~~g------~i~~Ri---~~~~~~ea~~~ 203 (282)
T PRK05808 139 MHFFNPVPVMKLVE-IIRG-----LATSDATHEAVEALAKKIGKTPVEVKNAPG------FVVNRI---LIPMINEAIFV 203 (282)
T ss_pred eeccCCcccCccEE-EeCC-----CCCCHHHHHHHHHHHHHcCCeeEEecCccC------hHHHHH---HHHHHHHHHHH
Confidence 56666 45554432 1111 345789999999999999999999987 55 233433 34677899999
Q ss_pred HHHcCCCHHHHHHHHh
Q 024066 166 GQSLGISASTLTKILN 181 (273)
Q Consensus 166 a~~~Gl~~~~~~~~l~ 181 (273)
.++--.+++++=..+.
T Consensus 204 ~~~gv~~~~diD~~~~ 219 (282)
T PRK05808 204 LAEGVATAEDIDEGMK 219 (282)
T ss_pred HHhCCCCHHHHHHHHH
Confidence 8775567777544444
No 61
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.96 E-value=0.0011 Score=59.59 Aligned_cols=150 Identities=14% Similarity=0.094 Sum_probs=102.7
Q ss_pred CCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCC
Q 024066 8 PTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWEN 87 (273)
Q Consensus 8 ~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~~g 87 (273)
+.++++++++++||+||-|+|...+++..++. .+.+.. +++ .||.+||++. ...++++.+.. .
T Consensus 72 ~~~~~l~~av~~aDlViEavpE~l~vK~~lf~--~l~~~~--~~~-aIlaSnTS~l-~~s~la~~~~~------p----- 134 (321)
T PRK07066 72 RFVATIEACVADADFIQESAPEREALKLELHE--RISRAA--KPD-AIIASSTSGL-LPTDFYARATH------P----- 134 (321)
T ss_pred eecCCHHHHhcCCCEEEECCcCCHHHHHHHHH--HHHHhC--CCC-eEEEECCCcc-CHHHHHHhcCC------c-----
Confidence 56778999999999999999999999888763 355442 344 6888888843 45567766532 1
Q ss_pred ceEEEecCCCCHHHHhcCceEEEeec---CHHHHHHHHHHHHHhcCCeEEeC-C-cChHHHHHHHHHHHHHHHHHHHHHH
Q 024066 88 PVMLDAPVSGGVLAAEAGTLTFMVGG---SEDAYQAAKPLFLSMGKNTIYCG-G-AGNGAAAKICNNLTMAVSMLGVSEA 162 (273)
Q Consensus 88 ~~~ldapv~G~~~~a~~g~l~~~vgG---~~~~~~~~~~~l~~~~~~i~~~G-~-~g~a~~~Kl~~n~~~~~~~~~~~Ea 162 (273)
-+++-.=-+-.|.-. .|.=++.| ++++++++..+++.+|+..+.+. + +| .+.|=+. .+.+.|+
T Consensus 135 ~R~~g~HffnP~~~~---pLVEVv~g~~T~~e~~~~~~~f~~~lGk~pV~v~kd~pG------Fi~NRl~---~a~~~EA 202 (321)
T PRK07066 135 ERCVVGHPFNPVYLL---PLVEVLGGERTAPEAVDAAMGIYRALGMRPLHVRKEVPG------FIADRLL---EALWREA 202 (321)
T ss_pred ccEEEEecCCccccC---ceEEEeCCCCCCHHHHHHHHHHHHHcCCEeEecCCCCcc------HHHHHHH---HHHHHHH
Confidence 123332222222211 34445554 46899999999999998888884 5 66 3445443 4678999
Q ss_pred HHHHHHcCCCHHHHHHHHhhcCCc
Q 024066 163 LTLGQSLGISASTLTKILNSSSAR 186 (273)
Q Consensus 163 ~~la~~~Gl~~~~~~~~l~~~~~~ 186 (273)
+.+.++-..+++++=.++..+.+-
T Consensus 203 ~~lv~eGvas~edID~a~~~g~g~ 226 (321)
T PRK07066 203 LHLVNEGVATTGEIDDAIRFGAGI 226 (321)
T ss_pred HHHHHhCCCCHHHHHHHHHhCCCC
Confidence 999999889999887777666553
No 62
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=97.96 E-value=2.8e-05 Score=64.47 Aligned_cols=107 Identities=16% Similarity=0.151 Sum_probs=60.5
Q ss_pred CCCCCHHHHHhcCCEEEEeCCChH---------HHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchh
Q 024066 8 PTKETPFEVAEASDVVITMLPSSS---------HVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCIL 78 (273)
Q Consensus 8 ~~~~s~~e~~~~advvi~~v~~~~---------av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~ 78 (273)
++.++..+++.+||++|+|||+|. .+++++. .+.+.+ .++++||..||+.|.+++++.+.+-+..
T Consensus 65 ~~t~~~~~ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~---~i~~~l--~~~~lvV~~STvppGtt~~~~~~ile~~- 138 (185)
T PF03721_consen 65 RATTDIEEAIKDADVVFICVPTPSDEDGSPDLSYVESAIE---SIAPVL--RPGDLVVIESTVPPGTTEELLKPILEKR- 138 (185)
T ss_dssp EEESEHHHHHHH-SEEEE----EBETTTSBETHHHHHHHH---HHHHHH--CSCEEEEESSSSSTTHHHHHHHHHHHHH-
T ss_pred hhhhhhhhhhhccceEEEecCCCccccCCccHHHHHHHHH---HHHHHH--hhcceEEEccEEEEeeehHhhhhhhhhh-
Confidence 556788899999999999999874 3455553 244443 4578999999999999997776554321
Q ss_pred hhccCCCCCceEEEecCC---CCHHHHhcCceEEEeecCHHH-HHHHHH
Q 024066 79 KEKKDSWENPVMLDAPVS---GGVLAAEAGTLTFMVGGSEDA-YQAAKP 123 (273)
Q Consensus 79 ~~~~g~~~g~~~ldapv~---G~~~~a~~g~l~~~vgG~~~~-~~~~~~ 123 (273)
++...++.+.-+|-. |..-.--...-.++.|.+++. .+++++
T Consensus 139 ---~~~~~~f~la~~PErl~~G~a~~d~~~~~rvV~G~~~~~~~~~~~~ 184 (185)
T PF03721_consen 139 ---SGKKEDFHLAYSPERLREGRAIEDFRNPPRVVGGCDDESAEERLKE 184 (185)
T ss_dssp ---CCTTTCEEEEE------TTSHHHHHHSSSEEEEEESSHHHHHHHHH
T ss_pred ---cccccCCeEEECCCccCCCCcchhccCCCEEEEeCCcHHHHHHHhc
Confidence 111125788889954 443332222334555555543 335544
No 63
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=97.95 E-value=0.00046 Score=61.38 Aligned_cols=215 Identities=11% Similarity=0.117 Sum_probs=116.8
Q ss_pred CCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCce
Q 024066 10 KETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPV 89 (273)
Q Consensus 10 ~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~~g~~ 89 (273)
.+++.++...+|+||+|++.+ ++++++.. +.+.. .++.+||.+... .+....+.+.+.+. + ...++.
T Consensus 59 ~~~~~~~~~~~d~vilavk~~-~~~~~~~~---l~~~~--~~~~~ii~~~nG-~~~~~~l~~~~~~~----~--v~~g~~ 125 (305)
T PRK12921 59 ITDPEELTGPFDLVILAVKAY-QLDAAIPD---LKPLV--GEDTVIIPLQNG-IGQLEQLEPYFGRE----R--VLGGVV 125 (305)
T ss_pred ecCHHHccCCCCEEEEEeccc-CHHHHHHH---HHhhc--CCCCEEEEeeCC-CChHHHHHHhCCcc----c--EEEEEE
Confidence 456677778999999999986 45666643 33321 234556554332 23333444444221 0 001245
Q ss_pred EEEecCCCCHHHHhcCceEEEeecC----HHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHH------------
Q 024066 90 MLDAPVSGGVLAAEAGTLTFMVGGS----EDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA------------ 153 (273)
Q Consensus 90 ~ldapv~G~~~~a~~g~l~~~vgG~----~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~~~------------ 153 (273)
+..++..+.-.-...+.-.+.+|.. .+..+++..+|...+..+....++-...-.|++.|....
T Consensus 126 ~~~~~~~~~g~v~~~~~~~~~iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~n~l~a~~~~~~g~ 205 (305)
T PRK12921 126 FISAQLNGDGVVVQRADHRLTFGEIPGQRSERTRAVRDALAGARLEVVLSENIRQDIWRKLLFNAVMNGMTALGRATVGG 205 (305)
T ss_pred EEEEEECCCeEEEEcCCCcEEEcCCCCCcCHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHhHHHHHHHhCCCHHH
Confidence 5556654421111112223556542 234556666777666555555557888999999886542
Q ss_pred ---------HHHHHHHHHHHHHHHcCCCH--HHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHH
Q 024066 154 ---------VSMLGVSEALTLGQSLGISA--STLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDL 222 (273)
Q Consensus 154 ---------~~~~~~~Ea~~la~~~Gl~~--~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~ 222 (273)
.....+.|...++++.|++. +.+.+.+..-.... ... .+.|+.. +..+.. .-++.. .
T Consensus 206 ~~~~~~~~~l~~~~~~E~~~v~~a~G~~~~~~~~~~~~~~~~~~~--~~~---~sSm~~D-~~~gr~---tEid~i---~ 273 (305)
T PRK12921 206 ILSRPGGRDLARALLRECLAVARAEGAPLRDDVVEEIVKIFAGAP--GDM---KTSMLRD-MEKGRP---LEIDHL---Q 273 (305)
T ss_pred HHhCccHHHHHHHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccC--CCC---CcHHHHH-HHcCCc---ccHHHH---H
Confidence 24467899999999999864 33333332210000 000 0111110 001110 012222 2
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHH
Q 024066 223 NLALASAKEVGVDCPLTSQAQDIYAKL 249 (273)
Q Consensus 223 ~~~~~~a~~~g~~~~~~~~~~~~~~~a 249 (273)
..++++++++|+++|..+...+++...
T Consensus 274 G~vv~~a~~~gv~~P~~~~l~~~~~~~ 300 (305)
T PRK12921 274 GVLLRRARAHGIPTPILDTVYALLKAY 300 (305)
T ss_pred HHHHHHHHHhCCCCcHHHHHHHHHHHH
Confidence 358999999999999999999988654
No 64
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=97.95 E-value=0.00046 Score=59.76 Aligned_cols=156 Identities=13% Similarity=0.151 Sum_probs=96.0
Q ss_pred CCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCC
Q 024066 5 MGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDS 84 (273)
Q Consensus 5 ~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~ 84 (273)
.|++.++++.+++++||+||+||+ |.++.+|+.. +-+.. .++++||.++..-+- .++.+.+..
T Consensus 29 ~g~~~~~~~~e~~~~aDiIiLaVk-P~~i~~vl~~---l~~~~--~~~~~ivS~~agi~~--~~l~~~~~~--------- 91 (245)
T TIGR00112 29 LGIVASSDAQEAVKEADVVFLAVK-PQDLEEVLSE---LKSEK--GKDKLLISIAAGVTL--EKLSQLLGG--------- 91 (245)
T ss_pred cCcEEeCChHHHHhhCCEEEEEeC-HHHHHHHHHH---Hhhhc--cCCCEEEEecCCCCH--HHHHHHcCC---------
Confidence 378888999999999999999999 7889998854 22211 234566655444433 234444421
Q ss_pred CCCceEEEecCCCCHHHHhcCceEEEeec--CHHHHHHHHHHHHHhcCCeEEeCC--cChHHHHHHHHHHHHHHHHHHHH
Q 024066 85 WENPVMLDAPVSGGVLAAEAGTLTFMVGG--SEDAYQAAKPLFLSMGKNTIYCGG--AGNGAAAKICNNLTMAVSMLGVS 160 (273)
Q Consensus 85 ~~g~~~ldapv~G~~~~a~~g~l~~~vgG--~~~~~~~~~~~l~~~~~~i~~~G~--~g~a~~~Kl~~n~~~~~~~~~~~ 160 (273)
+.. +---+--.+....+|...+..+. +++..+.++.+|+.+|. ++++.+ ......+--+...+++..+..+.
T Consensus 92 --~~~-ivR~mPn~~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G~-~~~v~E~~~~~~talsgsgPA~~~~~~~al~ 167 (245)
T TIGR00112 92 --TRR-VVRVMPNTPAKVGAGVTAIAANANVSEEDRALVLALFKAVGE-VVELPEALMDAVTALSGSGPAYVFLFIEALA 167 (245)
T ss_pred --CCe-EEEECCChHHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCCC-EEEECHHHcchHHhhccCcHHHHHHHHHHHH
Confidence 011 21223334444555553444432 34556889999999998 556655 44455444445555555555555
Q ss_pred HHHHHHHHcCCCHHHHHHHHhhcC
Q 024066 161 EALTLGQSLGISASTLTKILNSSS 184 (273)
Q Consensus 161 Ea~~la~~~Gl~~~~~~~~l~~~~ 184 (273)
+ .+.+.|+++++-.+++....
T Consensus 168 ~---~~v~~Gl~~~~A~~lv~~~~ 188 (245)
T TIGR00112 168 D---AGVKQGLPRELALELAAQTV 188 (245)
T ss_pred H---HHHHcCCCHHHHHHHHHHHH
Confidence 4 47778999999888776653
No 65
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.90 E-value=0.00018 Score=63.67 Aligned_cols=149 Identities=15% Similarity=0.159 Sum_probs=93.5
Q ss_pred CCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEE-EEcCCCCHHHHHHHHHHHhhchhhhccCC
Q 024066 6 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLL-IDSSTIDPQTSRNISAAVSNCILKEKKDS 84 (273)
Q Consensus 6 Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~ii-id~ST~~P~~~~~l~~~~~~~g~~~~~g~ 84 (273)
..+.+++.++++++||+||.|+|.+.+++..++. .+.+.. +++.++ .++||.++....+ .+.. .
T Consensus 71 ~i~~~~d~~~a~~~aDlVieavpe~~~~k~~~~~--~l~~~~--~~~~ii~sntSt~~~~~~~~---~~~~------~-- 135 (287)
T PRK08293 71 RITLTTDLAEAVKDADLVIEAVPEDPEIKGDFYE--ELAKVA--PEKTIFATNSSTLLPSQFAE---ATGR------P-- 135 (287)
T ss_pred CeEEeCCHHHHhcCCCEEEEeccCCHHHHHHHHH--HHHhhC--CCCCEEEECcccCCHHHHHh---hcCC------c--
Confidence 3456788999999999999999998766554432 233332 344555 5888887865443 2221 0
Q ss_pred CCCceEEEecCCCCHHHHhcCceEEEe---ecCHHHHHHHHHHHHHhcCCeEEeC-C-cChHHHHHHHHHHHHHHHHHHH
Q 024066 85 WENPVMLDAPVSGGVLAAEAGTLTFMV---GGSEDAYQAAKPLFLSMGKNTIYCG-G-AGNGAAAKICNNLTMAVSMLGV 159 (273)
Q Consensus 85 ~~g~~~ldapv~G~~~~a~~g~l~~~v---gG~~~~~~~~~~~l~~~~~~i~~~G-~-~g~a~~~Kl~~n~~~~~~~~~~ 159 (273)
.+|+-.=.+..+. ...+..++ ..++++++++..+++.+++..+++. + +|. +.|=+ ....+
T Consensus 136 ---~r~vg~Hf~~p~~---~~~lvevv~~~~t~~~~~~~~~~~~~~~Gk~pv~v~~d~pgf------i~nRi---~~~~~ 200 (287)
T PRK08293 136 ---EKFLALHFANEIW---KNNTAEIMGHPGTDPEVFDTVVAFAKAIGMVPIVLKKEQPGY------ILNSL---LVPFL 200 (287)
T ss_pred ---ccEEEEcCCCCCC---cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCCCCCH------hHHHH---HHHHH
Confidence 1233211111111 22445555 3467899999999999999888886 4 552 22332 34577
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhhcC
Q 024066 160 SEALTLGQSLGISASTLTKILNSSS 184 (273)
Q Consensus 160 ~Ea~~la~~~Gl~~~~~~~~l~~~~ 184 (273)
+|++.+.+..-.+++++=.++..+.
T Consensus 201 ~ea~~l~~~g~a~~~~iD~a~~~~~ 225 (287)
T PRK08293 201 SAALALWAKGVADPETIDKTWMIAT 225 (287)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHhcc
Confidence 9999999987678888755555543
No 66
>PLN02712 arogenate dehydrogenase
Probab=97.89 E-value=0.00024 Score=70.06 Aligned_cols=116 Identities=15% Similarity=0.186 Sum_probs=76.9
Q ss_pred cCCCCCCCCHHHHHh-cCCEEEEeCCChHHHHHHHcCCCCccc-CCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhc
Q 024066 4 DMGVPTKETPFEVAE-ASDVVITMLPSSSHVLDVYNGPNGLLQ-GGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEK 81 (273)
Q Consensus 4 ~~Ga~~~~s~~e~~~-~advvi~~v~~~~av~~v~~~~~g~l~-~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~ 81 (273)
+.|+....++.+++. .+|+||+|+|. ....+++.. +.. .+ +++.+|+|++++.-...+.+.+.+..
T Consensus 409 ~~Gv~~~~~~~el~~~~aDvVILavP~-~~~~~vi~~---l~~~~l--k~g~ivvDv~SvK~~~~~~~~~~l~~------ 476 (667)
T PLN02712 409 KLGVSYFSDADDLCEEHPEVILLCTSI-LSTEKVLKS---LPFQRL--KRSTLFVDVLSVKEFPRNLFLQHLPQ------ 476 (667)
T ss_pred HcCCeEeCCHHHHHhcCCCEEEECCCh-HHHHHHHHH---HHHhcC--CCCcEEEECCCccHHHHHHHHHhccC------
Confidence 357777778888776 59999999996 566777653 221 22 35689999999984444444433321
Q ss_pred cCCCCCceEE-EecCCCCHHHHhcC--ceE-----EEeecCHHHHHHH---HHHHHHhcCCeEEeCC
Q 024066 82 KDSWENPVML-DAPVSGGVLAAEAG--TLT-----FMVGGSEDAYQAA---KPLFLSMGKNTIYCGG 137 (273)
Q Consensus 82 ~g~~~g~~~l-dapv~G~~~~a~~g--~l~-----~~vgG~~~~~~~~---~~~l~~~~~~i~~~G~ 137 (273)
+..|+ ..|+.|.... ..| .+. .+++++.+.++++ ..+++.+|.+++.+.+
T Consensus 477 -----~~~~v~~HPm~G~e~~-~~G~~~~~~lf~~~~v~~~~~~~~~~~~l~~l~~~lGa~vv~ms~ 537 (667)
T PLN02712 477 -----DFDILCTHPMFGPESG-KNGWNNLAFVFDKVRIGSDDRRVSRCDSFLDIFAREGCRMVEMSC 537 (667)
T ss_pred -----CCceEeeCCCCCcccc-ccchhhhhhhccCcEeCCCcchHHHHHHHHHHHHHcCCEEEEeCH
Confidence 35688 8999998754 122 122 4566776665555 4788889998888865
No 67
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=97.73 E-value=0.0019 Score=56.41 Aligned_cols=209 Identities=9% Similarity=0.015 Sum_probs=117.0
Q ss_pred CCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCC
Q 024066 6 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSW 85 (273)
Q Consensus 6 Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~ 85 (273)
+...+.++.+++++||+||+|++ +.++++++.. +.+.. .++.+|-+++.+++++.+++.. ..
T Consensus 44 ~~~~~~~~~~~~~~~D~Vilavk-p~~~~~vl~~---i~~~l--~~~~iIS~~aGi~~~~l~~~~~---~~--------- 105 (260)
T PTZ00431 44 PFVYLQSNEELAKTCDIIVLAVK-PDLAGKVLLE---IKPYL--GSKLLISICGGLNLKTLEEMVG---VE--------- 105 (260)
T ss_pred CeEEeCChHHHHHhCCEEEEEeC-HHHHHHHHHH---HHhhc--cCCEEEEEeCCccHHHHHHHcC---CC---------
Confidence 33456788899999999999988 4678888864 43332 2346888999999887775431 10
Q ss_pred CCceEEEecCCCCHHHHhcCceEEEeec---CHHHHHHHHHHHHHhcCCeEEeCC--cChHHHHHHHHHHHHHHHHHHHH
Q 024066 86 ENPVMLDAPVSGGVLAAEAGTLTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGG--AGNGAAAKICNNLTMAVSMLGVS 160 (273)
Q Consensus 86 ~g~~~ldapv~G~~~~a~~g~l~~~vgG---~~~~~~~~~~~l~~~~~~i~~~G~--~g~a~~~Kl~~n~~~~~~~~~~~ 160 (273)
...+ --+.+.|.....|. ++++.+ +++..+.++.+|+.+|. ++.+.+ .-....+==+.-.+. ..+.
T Consensus 106 --~~vv-r~mPn~p~~~g~g~-t~i~~~~~~~~~~~~~v~~l~~~~G~-~~~v~E~~~d~~ta~~gsgPA~~----~~~~ 176 (260)
T PTZ00431 106 --AKIV-RVMPNTPSLVGQGS-LVFCANNNVDSTDKKKVIDIFSACGI-IQEIKEKDMDIATAISGCGPAYV----FLFI 176 (260)
T ss_pred --CeEE-EECCCchhHhccee-EEEEeCCCCCHHHHHHHHHHHHhCCc-EEEEChHHcchhhhhcCCHHHHH----HHHH
Confidence 1111 22334444444444 444444 34568899999999998 556644 233332222222223 3333
Q ss_pred HHH-HHHHHcCCCHHHHHHHHhhcCCccc-ccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChH
Q 024066 161 EAL-TLGQSLGISASTLTKILNSSSARCW-SSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPL 238 (273)
Q Consensus 161 Ea~-~la~~~Gl~~~~~~~~l~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~g~~~~~ 238 (273)
|++ ..+.+.|++.++-.+++.....++- +......-|.. +.+.--+|+-+ -...++..++.|+.--+
T Consensus 177 ~al~~~~v~~Gl~~~~a~~l~~~~~~G~a~ll~~~~~~~~~----l~~~v~spgG~-------T~~gl~~le~~g~~~~~ 245 (260)
T PTZ00431 177 ESLIDAGVKNGLNRDVSKNLVLQTILGSVHMVKASDQPVQQ----LKDDVCSPGGI-------TIVGLYTLEKHAFKYTV 245 (260)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHH----HHHhCCCCChH-------HHHHHHHHHHCChHHHH
Confidence 333 4577889999998887766532111 10000000000 00111122211 12344566777888778
Q ss_pred HHHHHHHHHHHHHC
Q 024066 239 TSQAQDIYAKLCEN 252 (273)
Q Consensus 239 ~~~~~~~~~~a~~~ 252 (273)
.+++..-++++.+-
T Consensus 246 ~~a~~aa~~r~~~l 259 (260)
T PTZ00431 246 MDAVESACQKSKSM 259 (260)
T ss_pred HHHHHHHHHHHHhc
Confidence 88877777776653
No 68
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.72 E-value=0.0014 Score=57.75 Aligned_cols=210 Identities=13% Similarity=0.080 Sum_probs=116.8
Q ss_pred CCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcC-CCCHHHHHHHHHHHhhchhhhccC
Q 024066 5 MGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSS-TIDPQTSRNISAAVSNCILKEKKD 83 (273)
Q Consensus 5 ~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~S-T~~P~~~~~l~~~~~~~g~~~~~g 83 (273)
.|++.+++..|++++||+||+||++ .++++|+.+ +.+.. .++++||+.- .++.++.+ +.+...
T Consensus 49 ~g~~~~~~~~e~~~~aDiIiLavkP-~~~~~vl~~---l~~~~--~~~~lvISi~AGi~i~~l~---~~l~~~------- 112 (272)
T PRK12491 49 YGITITTNNNEVANSADILILSIKP-DLYSSVINQ---IKDQI--KNDVIVVTIAAGKSIKSTE---NEFDRK------- 112 (272)
T ss_pred cCcEEeCCcHHHHhhCCEEEEEeCh-HHHHHHHHH---HHHhh--cCCcEEEEeCCCCcHHHHH---HhcCCC-------
Confidence 5777888999999999999999995 788999853 44332 3446888654 44444433 333210
Q ss_pred CCCCceEEEecCCCCHHHHhcCceEEEeec--CHHHHHHHHHHHHHhcCCeEEeCC--cChHHHHHHHHHHHHHHHHHHH
Q 024066 84 SWENPVMLDAPVSGGVLAAEAGTLTFMVGG--SEDAYQAAKPLFLSMGKNTIYCGG--AGNGAAAKICNNLTMAVSMLGV 159 (273)
Q Consensus 84 ~~~g~~~ldapv~G~~~~a~~g~l~~~vgG--~~~~~~~~~~~l~~~~~~i~~~G~--~g~a~~~Kl~~n~~~~~~~~~~ 159 (273)
.. +---+--.|.....|...+..+. +++..+.++.+|+.+|. ++.+.+ .....++==+.-.+ +..+
T Consensus 113 ----~~-vvR~MPN~~~~vg~g~t~~~~~~~~~~~~~~~v~~lf~~~G~-~~~~~E~~~d~~talsgsgPAf----~~~~ 182 (272)
T PRK12491 113 ----LK-VIRVMPNTPVLVGEGMSALCFNEMVTEKDIKEVLNIFNIFGQ-TEVVNEKLMDVVTSISGSSPAY----VYMF 182 (272)
T ss_pred ----Cc-EEEECCChHHHHcCceEEEEeCCCCCHHHHHHHHHHHHcCCC-EEEEcHHHhhhHHHhccCcHHH----HHHH
Confidence 11 11223344555555654444332 24466789999999999 466654 33333321122222 3344
Q ss_pred HHHH-HHHHHcCCCHHHHHHHHhhcCCccc-cc-ccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCC
Q 024066 160 SEAL-TLGQSLGISASTLTKILNSSSARCW-SS-DSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDC 236 (273)
Q Consensus 160 ~Ea~-~la~~~Gl~~~~~~~~l~~~~~~s~-~~-~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~g~~~ 236 (273)
.|++ ..+.+.|++.++-.+++.+...++- +. +.-.+ |..+ .+.=-+|+-+ -...++..++.|+.-
T Consensus 183 ~eal~~a~v~~Gl~~~~A~~l~~~t~~G~a~ll~~~~~~-p~~l----~~~V~sPGGt-------T~~gl~~le~~~~~~ 250 (272)
T PRK12491 183 IEAMADAAVLGGMPRKQAYKFAAQAVLGSAKMVLETGIH-PGEL----KDMVCSPGGT-------TIEAVATLEEKGLRT 250 (272)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCC-HHHH----HHhCCCCchH-------HHHHHHHHHHCChHH
Confidence 4444 4567789999988887766532211 10 00000 0000 0000122211 223456667788888
Q ss_pred hHHHHHHHHHHHHHHC
Q 024066 237 PLTSQAQDIYAKLCEN 252 (273)
Q Consensus 237 ~~~~~~~~~~~~a~~~ 252 (273)
-+.+++..-++++.+-
T Consensus 251 ~~~~av~aa~~r~~el 266 (272)
T PRK12491 251 AIISAMKRCTQKSMEM 266 (272)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888888777653
No 69
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.68 E-value=0.0017 Score=58.59 Aligned_cols=228 Identities=14% Similarity=0.133 Sum_probs=111.3
Q ss_pred CCCCHHHHH-hcCCEEEEeCCChHHHHHHHcCCCCccc-CCCCCCCeEEEEcCCCCHHH----HHHHHHHHhhchhhhcc
Q 024066 9 TKETPFEVA-EASDVVITMLPSSSHVLDVYNGPNGLLQ-GGNSVRPQLLIDSSTIDPQT----SRNISAAVSNCILKEKK 82 (273)
Q Consensus 9 ~~~s~~e~~-~~advvi~~v~~~~av~~v~~~~~g~l~-~~~~~~g~iiid~ST~~P~~----~~~l~~~~~~~g~~~~~ 82 (273)
...++.+++ ..+|+||+++|+. ++++++.. +.+ .. .+...+++-++-....+ .+.+.+.+..+
T Consensus 60 ~~~~~~~~~~~~~Dliiiavks~-~~~~~l~~---l~~~~l-~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~~------ 128 (326)
T PRK14620 60 VKSAIDEVLSDNATCIILAVPTQ-QLRTICQQ---LQDCHL-KKNTPILICSKGIEKSSLKFPSEIVNEILPNN------ 128 (326)
T ss_pred EeCCHHHHHhCCCCEEEEEeCHH-HHHHHHHH---HHHhcC-CCCCEEEEEEcCeeCCCCccHHHHHHHHcCCC------
Confidence 445667776 5899999999985 66777754 332 22 12222443333332211 12222222110
Q ss_pred CCCCCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCC---eEEeCCcChHHHHHHHHHHHHHH-----
Q 024066 83 DSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKN---TIYCGGAGNGAAAKICNNLTMAV----- 154 (273)
Q Consensus 83 g~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~---i~~~G~~g~a~~~Kl~~n~~~~~----- 154 (273)
.+..+..|-... ..+......+.++|... +..+.+.+.|... ++.--++-.....|++-|.+...
T Consensus 129 ----~~~~~~Gp~~a~-~~~~~~~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~Di~g~~~~k~~~N~ia~~~g~~~ 201 (326)
T PRK14620 129 ----PIAILSGPSFAK-EIAEKLPCSIVLAGQNE--TLGSSLISKLSNENLKIIYSQDIIGVQIGAALKNIIAIACGIVL 201 (326)
T ss_pred ----ceEeecCCcHHH-HHHcCCCcEEEEecCCH--HHHHHHHHHHCCCCeEEEecCcchhhhhHHHHHHHHHHHHHHHh
Confidence 022222221100 11222222344455433 2334444555443 33333466677778877764322
Q ss_pred ------------HHHHHHHHHHHHHHcCC--CHHHHH------HHHhhcC---CcccccccCCCCCCcccCCCCCCCCCC
Q 024066 155 ------------SMLGVSEALTLGQSLGI--SASTLT------KILNSSS---ARCWSSDSYNPVPGVMEGVPASRNYGG 211 (273)
Q Consensus 155 ------------~~~~~~Ea~~la~~~Gl--~~~~~~------~~l~~~~---~~s~~~~~~~~~~~~~~~~~~~~~~~~ 211 (273)
...++.|+..++++.|. ++++++ |.+.... .+++.+........++.+ +..+.
T Consensus 202 g~~~~~n~~~~l~~~~~~E~~~v~~a~G~~~~~~~~~gl~g~gdl~~t~~~~~~rN~~~G~~l~~g~~~~d-~~~~~--- 277 (326)
T PRK14620 202 GKNLGNNAHAAVITKGMNEIKTLYSAKNGSIDLNTLIGPSCLGDLILTCTTLHSRNMSFGFKIGNGFNINQ-ILSEG--- 277 (326)
T ss_pred hcCCCchHHHHHHHHHHHHHHHHHHHhCCCCCcchhhccchhhhhhheecCCCCCcHHHHHHHHCCCCHHH-HHHhC---
Confidence 35678899999999987 777774 5553321 000000000000000000 00000
Q ss_pred CcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCCCCCCcHHHHHHHH
Q 024066 212 GFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHY 266 (273)
Q Consensus 212 ~f~~~~~~KD~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~G~g~~d~sai~~~~ 266 (273)
. +.-....-+..+.+++++.|+++|+.+.+.+++ +++.+...+++.+
T Consensus 278 ~-~~vegi~~~~~v~~~a~~~~i~~P~~~~l~~~~-------~~~~~~~~~~~~~ 324 (326)
T PRK14620 278 K-SVIEGFSTVKPLISLAKKLNIELPICESIYNLL-------YENISLEKTISVI 324 (326)
T ss_pred C-CEeecHHHHHHHHHHHHHhCCCCCHHHHHHHHH-------hCCCCHHHHHHHH
Confidence 0 000123334678899999999999999998876 5566666666554
No 70
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=97.58 E-value=0.00053 Score=68.56 Aligned_cols=142 Identities=13% Similarity=0.152 Sum_probs=91.0
Q ss_pred CCCC--CCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhcc
Q 024066 5 MGVP--TKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKK 82 (273)
Q Consensus 5 ~Ga~--~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~ 82 (273)
.|+. ...+..++++++|+||+|+|.. .+.+++.. +.+.+ .++.+|+|++++.+...+++.+.+...
T Consensus 47 ~g~~~~~~~~~~~~~~~aDvVilavp~~-~~~~vl~~---l~~~~--~~~~ii~d~~svk~~~~~~l~~~~~~~------ 114 (735)
T PRK14806 47 LGVIDRGEEDLAEAVSGADVIVLAVPVL-AMEKVLAD---LKPLL--SEHAIVTDVGSTKGNVVDAARAVFGEL------ 114 (735)
T ss_pred CCCCCcccCCHHHHhcCCCEEEECCCHH-HHHHHHHH---HHHhc--CCCcEEEEcCCCchHHHHHHHHhcccc------
Confidence 4553 3556788899999999999975 67777753 43332 345799999999998888887776421
Q ss_pred CCCCCce-EEEecCCCCHHH---Hh-----cCceEEEee---cCHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHH
Q 024066 83 DSWENPV-MLDAPVSGGVLA---AE-----AGTLTFMVG---GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNL 150 (273)
Q Consensus 83 g~~~g~~-~ldapv~G~~~~---a~-----~g~l~~~vg---G~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~ 150 (273)
.++ +-..|+.|+... +. .+...+++- ++++.++.++++++.+|.+++++.+--.-..+=+ .+.
T Consensus 115 ----~~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~~~~~~~~hD~~~a~-~~~ 189 (735)
T PRK14806 115 ----PAGFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAETDPAALARVDRLWRAVGADVLHMDVAHHDEVLAA-TSH 189 (735)
T ss_pred ----CCeEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCCCHHHHHHHHHHHHHcCCEEEEcCHHHHhHHHHH-hcc
Confidence 144 457898876531 12 223334443 4667889999999999998888866322222222 233
Q ss_pred HHHHHHHHHHHHH
Q 024066 151 TMAVSMLGVSEAL 163 (273)
Q Consensus 151 ~~~~~~~~~~Ea~ 163 (273)
+-+.....+.|++
T Consensus 190 ~ph~~~~~l~~~l 202 (735)
T PRK14806 190 LPHLLAFSLVDQL 202 (735)
T ss_pred hHHHHHHHHHHHH
Confidence 3333344455553
No 71
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.56 E-value=0.0052 Score=52.85 Aligned_cols=151 Identities=13% Similarity=0.143 Sum_probs=87.0
Q ss_pred CCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhhchhhhccCC
Q 024066 6 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNCILKEKKDS 84 (273)
Q Consensus 6 Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~-ST~~P~~~~~l~~~~~~~g~~~~~g~ 84 (273)
|++...+..++++++|+||+|+|+. ..++++.. +.+.. ++++||.+ ..++.++ +.+.+..
T Consensus 53 ~~~~~~~~~~~~~~~DiViiavp~~-~~~~v~~~---l~~~~---~~~~vis~~~gi~~~~---l~~~~~~--------- 113 (245)
T PRK07634 53 NVSTTTDWKQHVTSVDTIVLAMPPS-AHEELLAE---LSPLL---SNQLVVTVAAGIGPSY---LEERLPK--------- 113 (245)
T ss_pred CcEEeCChHHHHhcCCEEEEecCHH-HHHHHHHH---HHhhc---cCCEEEEECCCCCHHH---HHHHcCC---------
Confidence 6666788999999999999999976 56778753 33321 23566654 4555553 4443321
Q ss_pred CCCceE-EEecCCCCHHHHhcCceEEEee--cCHHHHHHHHHHHHHhcCCeEEeCC--cChHHHHHHHHHHHHHHHHHHH
Q 024066 85 WENPVM-LDAPVSGGVLAAEAGTLTFMVG--GSEDAYQAAKPLFLSMGKNTIYCGG--AGNGAAAKICNNLTMAVSMLGV 159 (273)
Q Consensus 85 ~~g~~~-ldapv~G~~~~a~~g~l~~~vg--G~~~~~~~~~~~l~~~~~~i~~~G~--~g~a~~~Kl~~n~~~~~~~~~~ 159 (273)
+..+ .-.| -.+.....|...+..+ ++++..+.++.+|+.+|..+ ++.+ .-..+++=-+.-.+....+..
T Consensus 114 --~~~v~r~~P--n~a~~v~~g~~~~~~~~~~~~~~~~~v~~lf~~~G~~~-~~~e~~~~~~~a~~gs~pa~~~~~~~a- 187 (245)
T PRK07634 114 --GTPVAWIMP--NTAAEIGKSISLYTMGQSVNETHKETLQLILKGIGTSQ-LCTEEEVHQLTAVTGSAPAFLYYFAES- 187 (245)
T ss_pred --CCeEEEECC--cHHHHHhcCCeEEeeCCCCCHHHHHHHHHHHHhCCCEE-EECHHHcchHHhhhcchHHHHHHHHHH-
Confidence 1112 2233 2233444453233333 46678899999999999965 4643 222222222222223233333
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhhc
Q 024066 160 SEALTLGQSLGISASTLTKILNSS 183 (273)
Q Consensus 160 ~Ea~~la~~~Gl~~~~~~~~l~~~ 183 (273)
....+.+.|++.++-.+++...
T Consensus 188 --~~~~~~~~Gl~~~~a~~~~~~~ 209 (245)
T PRK07634 188 --LIEATKSYGVDEETAKHLVIQM 209 (245)
T ss_pred --HHHHHHHcCCCHHHHHHHHHHH
Confidence 3345788999999877777653
No 72
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.55 E-value=0.0055 Score=56.13 Aligned_cols=238 Identities=14% Similarity=0.055 Sum_probs=122.9
Q ss_pred CCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCC-CHHHH--HHHHHHHhhchhhhccC
Q 024066 7 VPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI-DPQTS--RNISAAVSNCILKEKKD 83 (273)
Q Consensus 7 a~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~-~P~~~--~~l~~~~~~~g~~~~~g 83 (273)
.+..++..++++++|+||+++|. ..+++++..-...- .. .++.++|.++-. .+++- ..+.+.+.+. - +
T Consensus 81 i~~tsdl~eav~~aDiIvlAVPs-q~l~~vl~~l~~~~-~l--~~~~~iIS~aKGIe~~t~~~~~~sevi~e~----l-~ 151 (365)
T PTZ00345 81 IVAVSDLKEAVEDADLLIFVIPH-QFLESVLSQIKENN-NL--KKHARAISLTKGIIVENGKPVLCSDVIEEE----L-G 151 (365)
T ss_pred eEEecCHHHHHhcCCEEEEEcCh-HHHHHHHHHhcccc-cc--CCCCEEEEEeCCcccCCCCcccHHHHHHHH----h-C
Confidence 44567888999999999999996 57888886533200 21 233456644332 22221 2334444331 0 0
Q ss_pred CCCCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCCeEEeCC-cCh--HHHHH--------------H
Q 024066 84 SWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGG-AGN--GAAAK--------------I 146 (273)
Q Consensus 84 ~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~i~~~G~-~g~--a~~~K--------------l 146 (273)
..+.++-.|-+-..-....-+..++.+-+.+..+.++.+|..=--+++.--+ .|. +.++| +
T Consensus 152 --~~~~~LsGPs~A~Eva~~~pt~~vias~~~~~a~~~~~lf~~~~frvy~s~Dv~GvEl~galKNviAIa~Gi~dGl~~ 229 (365)
T PTZ00345 152 --IPCCALSGANVANDVAREEFSEATIGCEDKDDALIWQRLFDRPYFKINCVPDVIGVEVCGALKNIIALAAGFCDGLGL 229 (365)
T ss_pred --CCeEEEECCCHHHHHHcCCCcEEEEEeCCHHHHHHHHHHhCCCcEEEEEcCCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 0122333332211111111233344444666666667666531112222122 232 33333 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHhhcC--CcccccccCCCCCCcccCCCCCCCCCCCcchhh-----
Q 024066 147 CNNLTMAVSMLGVSEALTLGQSLG--ISASTLTKILNSSS--ARCWSSDSYNPVPGVMEGVPASRNYGGGFASKL----- 217 (273)
Q Consensus 147 ~~n~~~~~~~~~~~Ea~~la~~~G--l~~~~~~~~l~~~~--~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~----- 217 (273)
=.|.-.+....++.|+..+++++| -++++++....-+- ..+..++++ .+...+..+. .+.+++-
T Consensus 230 G~N~kaalitrgl~Em~~l~~a~g~~~~~~T~~glaG~GDLi~Tc~sSRN~-----~~G~~l~~g~--~~~~~~~~~~~~ 302 (365)
T PTZ00345 230 GTNTKSAIIRIGLEEMKLFGKIFFPNVMDETFFESCGLADLITTCLGGRNV-----RCAAEFAKRN--GKKSWEEIEAEL 302 (365)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHhCCCCCccchhccchHhHhhhcccCCCcH-----HHHHHHhccC--CCCCHHHHHHHh
Confidence 467777777888999999999996 47777765322110 000000110 0000011110 0011222
Q ss_pred -------HHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHHHCCCCCCcHHHHHHHHhcC
Q 024066 218 -------MAKDLNLALASAKEVGV--DCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGG 269 (273)
Q Consensus 218 -------~~KD~~~~~~~a~~~g~--~~~~~~~~~~~~~~a~~~G~g~~d~sai~~~~~~~ 269 (273)
-..-...+.+++++.++ ++|+++++.+++ |++.+...+++.+..+
T Consensus 303 ~~~~~vEG~~t~~~v~~l~~~~~i~~~~Pi~~~vy~il-------~~~~~~~~~~~~l~~r 356 (365)
T PTZ00345 303 LNGQKLQGTVTLKEVYEVLESHDLKKEFPLFTVTYKIA-------FEGADPSSLIDVLSTN 356 (365)
T ss_pred hCCcEechHHHHHHHHHHHHHcCCCCCCCHHHHHHHHH-------hCCCCHHHHHHHHHcC
Confidence 23335667789999999 899999998887 5666777777766544
No 73
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=97.44 E-value=0.0023 Score=55.82 Aligned_cols=107 Identities=15% Similarity=0.245 Sum_probs=71.2
Q ss_pred HHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEE-
Q 024066 14 FEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD- 92 (273)
Q Consensus 14 ~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~~g~~~ld- 92 (273)
.+++.++|+||+|+|-. .+.+++.. +.+.+ ..+.+|+|.+++--.-.+.+.+.+.. +..|+-
T Consensus 40 ~~~~~~~DlvvlavP~~-~~~~~l~~---~~~~~--~~~~iv~Dv~SvK~~~~~~~~~~~~~-----------~~~~v~~ 102 (258)
T PF02153_consen 40 IEAVEDADLVVLAVPVS-AIEDVLEE---IAPYL--KPGAIVTDVGSVKAPIVEAMERLLPE-----------GVRFVGG 102 (258)
T ss_dssp HHHGGCCSEEEE-S-HH-HHHHHHHH---HHCGS---TTSEEEE--S-CHHHHHHHHHHHTS-----------SGEEEEE
T ss_pred HhHhcCCCEEEEcCCHH-HHHHHHHH---hhhhc--CCCcEEEEeCCCCHHHHHHHHHhcCc-----------ccceeec
Confidence 67899999999999975 55667653 44432 45689999999998888877776542 256776
Q ss_pred ecCCCC--------HHHHhcCceEEEeecC---HHHHHHHHHHHHHhcCCeEEeCC
Q 024066 93 APVSGG--------VLAAEAGTLTFMVGGS---EDAYQAAKPLFLSMGKNTIYCGG 137 (273)
Q Consensus 93 apv~G~--------~~~a~~g~l~~~vgG~---~~~~~~~~~~l~~~~~~i~~~G~ 137 (273)
=|+.|. ...--.|...+++-++ ++.++.++.+++.+|.+++++..
T Consensus 103 HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~~ 158 (258)
T PF02153_consen 103 HPMAGPEKSGPEAADADLFEGRNWILCPGEDTDPEALELVEELWEALGARVVEMDA 158 (258)
T ss_dssp EESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHHHHHHHHCT-EEEE--H
T ss_pred CCCCCCccccchhhcccccCCCeEEEeCCCCChHHHHHHHHHHHHHCCCEEEEcCH
Confidence 588887 2333356667777443 46889999999999999888743
No 74
>PF00393 6PGD: 6-phosphogluconate dehydrogenase, C-terminal domain; InterPro: IPR006114 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequences are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This entry represents the C-terminal all-alpha domain of 6-phosphogluconate dehydrogenase. The domain contains two structural repeats of 5 helices each. The NAD-binding domain is described in IPR006115 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 2ZYD_A 2ZYA_A 3FWN_A 2JKV_E 2ZYG_B 4E21_A 1PGJ_A 1PGP_A 1PGN_A 2PGD_A ....
Probab=97.44 E-value=0.00046 Score=60.72 Aligned_cols=102 Identities=18% Similarity=0.237 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHh---hcCCcccccccCCCCCCcccCCCCCCCCCCCcchh
Q 024066 141 GAAAKICNNLTMAVSMLGVSEALTLGQS-LGISASTLTKILN---SSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASK 216 (273)
Q Consensus 141 a~~~Kl~~n~~~~~~~~~~~Ea~~la~~-~Gl~~~~~~~~l~---~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 216 (273)
|+.+||++|-+.++.|++++|++.+.++ .|++.+++.++++ .+..+||+.+....+ +. ..|.++..-++
T Consensus 1 GHyvKMVHNGIEYg~MQ~iaE~y~ll~~~~~~~~~ei~~vf~~Wn~g~l~S~Lieit~~i---l~----~~d~~g~~lld 73 (291)
T PF00393_consen 1 GHYVKMVHNGIEYGDMQLIAEGYDLLRRGLGLSNEEIADVFEEWNKGELRSYLIEITADI---LR----KKDETGGPLLD 73 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--HHHHHHHHHHHHTTTT-BHHHHHHHHH---HT-----B-TTSSBGGG
T ss_pred CCceeeeeccHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHCcCchhhHHHHHHHHH---Hh----hccCccCcchh
Confidence 6889999999999999999999999995 7898887766665 566677766543221 11 11111111112
Q ss_pred hH------HHHHHHHHHHHHHhCCCChHHHHHH-HHHHHH
Q 024066 217 LM------AKDLNLALASAKEVGVDCPLTSQAQ-DIYAKL 249 (273)
Q Consensus 217 ~~------~KD~~~~~~~a~~~g~~~~~~~~~~-~~~~~a 249 (273)
.. ...-+.....|-+.|+|.|.+..+. .++.+.
T Consensus 74 ~I~d~a~~kGtG~Wt~~~a~~~gvp~p~I~~a~~aR~~S~ 113 (291)
T PF00393_consen 74 KILDKAGQKGTGKWTVQEALELGVPAPTIAAAVFARFLSA 113 (291)
T ss_dssp GB-S----BSHHHHHHHHHHHHT---HHHHHHHHHHHHHH
T ss_pred hhCCccCCCCccchHHHHHHHhCCCccHHHHHHHHHHHhc
Confidence 11 1224667788999999999998876 555444
No 75
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.35 E-value=0.013 Score=52.54 Aligned_cols=233 Identities=19% Similarity=0.275 Sum_probs=133.6
Q ss_pred CCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCC-CCHHHHHHHHHHHhhchhhhccCC
Q 024066 6 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSST-IDPQTSRNISAAVSNCILKEKKDS 84 (273)
Q Consensus 6 Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST-~~P~~~~~l~~~~~~~g~~~~~g~ 84 (273)
+.++.++..+++++||+|++.+|. ..+++++..-.+.+ +++.++|.+|= ..|++.+.+.+.+++. -++.
T Consensus 58 ~l~at~Dl~~a~~~ad~iv~avPs-~~~r~v~~~l~~~l-----~~~~~iv~~sKGie~~t~~l~seii~e~----l~~~ 127 (329)
T COG0240 58 NLKATTDLAEALDGADIIVIAVPS-QALREVLRQLKPLL-----LKDAIIVSATKGLEPETGRLLSEIIEEE----LPDN 127 (329)
T ss_pred ccccccCHHHHHhcCCEEEEECCh-HHHHHHHHHHhhhc-----cCCCeEEEEeccccCCCcchHHHHHHHH----cCCC
Confidence 456778999999999999999997 57888886532232 24456665553 5566777777776652 1110
Q ss_pred CCCceEEEecCCCCHHHHhcCceEEEeec-CHHHHHHHHHHHHHhcCCeEEeCC-cC--hH--------------HHHHH
Q 024066 85 WENPVMLDAPVSGGVLAAEAGTLTFMVGG-SEDAYQAAKPLFLSMGKNTIYCGG-AG--NG--------------AAAKI 146 (273)
Q Consensus 85 ~~g~~~ldapv~G~~~~a~~g~l~~~vgG-~~~~~~~~~~~l~~~~~~i~~~G~-~g--~a--------------~~~Kl 146 (273)
.+.++..|=+-..-....-+ .+.+++ |++..++++..|..=.-+++.--+ .| -| .-+.+
T Consensus 128 --~~~vLSGPs~A~EVa~g~pt-a~~vas~d~~~a~~v~~~f~~~~Frvy~~~Dv~GveigGAlKNViAIA~Gi~dGlg~ 204 (329)
T COG0240 128 --PIAVLSGPSFAKEVAQGLPT-AVVVASNDQEAAEKVQALFSSPYFRVYTSTDVIGVEIGGALKNVIAIAAGIADGLGL 204 (329)
T ss_pred --eEEEEECccHHHHHhcCCCc-EEEEecCCHHHHHHHHHHhCCCcEEEEecCchhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 03333333222211111223 455555 566666677766652112221111 12 22 23445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCC------Ccc------
Q 024066 147 CNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGG------GFA------ 214 (273)
Q Consensus 147 ~~n~~~~~~~~~~~Ea~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~------~f~------ 214 (273)
-+|.-.+...-+++|...++..+|=.+++++-.-. .|+ .+..-.. ..+|+|.- +.+
T Consensus 205 G~NakaalitrGL~Em~rlg~~lG~~~~T~~gLsG--lGD-LilTCts---------~~SRN~r~G~~lg~g~~~~e~l~ 272 (329)
T COG0240 205 GDNAKAALITRGLAEMTRLGVALGAKPETFMGLSG--LGD-LILTCTS---------PLSRNRRFGLLLGQGLSLDEALE 272 (329)
T ss_pred ChhHHHHHHHhHHHHHHHHHHHhCCCcchhccccc--ccc-eeEecCC---------CccccHHHHHHHhCCCCHHHHHH
Confidence 56777777788999999999999999886643321 111 1100000 01222211 111
Q ss_pred ----hhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCCCCCCcHHHHHHHHhcCC
Q 024066 215 ----SKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGK 270 (273)
Q Consensus 215 ----~~~~~KD~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~G~g~~d~sai~~~~~~~~ 270 (273)
+---.+-.+.+.+.+++.|+++|+++++.+++ |++.+....++.+..++
T Consensus 273 ~~g~vvEGv~t~k~v~~la~~~~i~mPI~~~Vy~vl-------~~~~~~~~~~~~L~~r~ 325 (329)
T COG0240 273 EIGQVVEGVRTAKAVYELAKKLGIEMPITEAVYRVL-------YEGLDPKEAIEELMGRD 325 (329)
T ss_pred hcCCeeecHHHHHHHHHHHHHcCCCCCHHHHHHHHH-------hCCCCHHHHHHHHhccc
Confidence 11224556778899999999999999998887 45667777776664443
No 76
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=97.27 E-value=0.011 Score=53.74 Aligned_cols=155 Identities=15% Similarity=0.094 Sum_probs=84.8
Q ss_pred CCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCC-CCHH--HHHHHHHHHhhchhhhccC
Q 024066 7 VPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSST-IDPQ--TSRNISAAVSNCILKEKKD 83 (273)
Q Consensus 7 a~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST-~~P~--~~~~l~~~~~~~g~~~~~g 83 (273)
.+..+++.+++++||+||+++|+. .+++++.. +.+.+ ..++++|.++= +.++ +.+.+.+.+.+. + +
T Consensus 70 i~at~dl~eal~~ADiIIlAVPs~-~i~~vl~~---l~~~l--~~~~~iVs~tKGie~~~~~~~~~se~i~e~-l----~ 138 (342)
T TIGR03376 70 LVAVPDLVEAAKGADILVFVIPHQ-FLEGICKQ---LKGHV--KPNARAISCIKGLEVSKDGVKLLSDIIEEE-L----G 138 (342)
T ss_pred eEEECCHHHHHhcCCEEEEECChH-HHHHHHHH---HHhhc--CCCCEEEEEeCCcccCCCcCccHHHHHHHH-h----C
Confidence 345678999999999999999975 77777754 32222 23345555442 2333 444555555442 0 0
Q ss_pred CCCCceEEEecCCCCHHHHhcCceEEEeecC----HHHHHHHHHHHHHhcCCeEE--eC-C-cCh--HHHHH--------
Q 024066 84 SWENPVMLDAPVSGGVLAAEAGTLTFMVGGS----EDAYQAAKPLFLSMGKNTIY--CG-G-AGN--GAAAK-------- 145 (273)
Q Consensus 84 ~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~----~~~~~~~~~~l~~~~~~i~~--~G-~-~g~--a~~~K-------- 145 (273)
..+.++-.|-+-..-....-+...+.+-+ .+..+.++.+|. .+.++ .. + +|. +.++|
T Consensus 139 --~~~~~lsGP~~A~Eva~~~pt~~~ia~~~~~~~~~~a~~~~~lf~---~~~frv~~s~Dv~GvEl~galKNv~AIa~G 213 (342)
T TIGR03376 139 --IPCGVLSGANLANEVAKEKFSETTVGYRDPADFDVDARVLKALFH---RPYFRVNVVDDVAGVEIAGALKNVVAIAAG 213 (342)
T ss_pred --CCeEEeeCcchHHHHHcCCCceEEEEeCCCcchHHHHHHHHHHhC---CCCEEEEEcCCcccchhhHHHHHHHHHHHH
Confidence 01223333322221111112234444445 455556666654 33222 22 2 332 44444
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHcCCCHH--HHH
Q 024066 146 ------ICNNLTMAVSMLGVSEALTLGQSLGISAS--TLT 177 (273)
Q Consensus 146 ------l~~n~~~~~~~~~~~Ea~~la~~~Gl~~~--~~~ 177 (273)
+=.|.-.+....++.|+..+++.+|-+++ +++
T Consensus 214 i~~Gl~~g~N~~aalitrgl~Em~~l~~~~g~~~~~~T~~ 253 (342)
T TIGR03376 214 FVDGLGWGDNAKAAVMRRGLLEMIKFARMFFPTGEVTFTF 253 (342)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccc
Confidence 23477667777888999999999998766 554
No 77
>PLN02256 arogenate dehydrogenase
Probab=97.24 E-value=0.0079 Score=53.79 Aligned_cols=115 Identities=20% Similarity=0.199 Sum_probs=76.8
Q ss_pred CCCCCCCCHHHHH-hcCCEEEEeCCChHHHHHHHcCCCCc-ccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhcc
Q 024066 5 MGVPTKETPFEVA-EASDVVITMLPSSSHVLDVYNGPNGL-LQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKK 82 (273)
Q Consensus 5 ~Ga~~~~s~~e~~-~~advvi~~v~~~~av~~v~~~~~g~-l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~ 82 (273)
.|+....+..+++ .++|+||+|+|.. ++.+++.. + ...+ .++.+|+|.+++--...+.+.+.+..
T Consensus 77 ~gv~~~~~~~e~~~~~aDvVilavp~~-~~~~vl~~---l~~~~l--~~~~iviDv~SvK~~~~~~~~~~l~~------- 143 (304)
T PLN02256 77 LGVSFFRDPDDFCEEHPDVVLLCTSIL-STEAVLRS---LPLQRL--KRSTLFVDVLSVKEFPKNLLLQVLPE------- 143 (304)
T ss_pred cCCeeeCCHHHHhhCCCCEEEEecCHH-HHHHHHHh---hhhhcc--CCCCEEEecCCchHHHHHHHHHhCCC-------
Confidence 4666677888876 4799999999975 66777753 3 2222 34579999999766556666555421
Q ss_pred CCCCCceEEE-ecCCCCHHH--HhcCceEEEeec--------CHHHHHHHHHHHHHhcCCeEEeCC
Q 024066 83 DSWENPVMLD-APVSGGVLA--AEAGTLTFMVGG--------SEDAYQAAKPLFLSMGKNTIYCGG 137 (273)
Q Consensus 83 g~~~g~~~ld-apv~G~~~~--a~~g~l~~~vgG--------~~~~~~~~~~~l~~~~~~i~~~G~ 137 (273)
+..|+- -|+.|.... ...+. .++... +++.++.++.+++.+|.+++.+.+
T Consensus 144 ----~~~~V~~HPmaG~e~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~l~~l~~~lGa~v~~~~~ 204 (304)
T PLN02256 144 ----EFDILCTHPMFGPESGKGGWAGL-PFVYDKVRIGDEGEREARCERFLDIFEEEGCRMVEMSC 204 (304)
T ss_pred ----CCeEEecCCCCCCCCCccccCCC-eEEEecceecCCCCCHHHHHHHHHHHHHCCCEEEEeCH
Confidence 234444 677776532 22233 344432 567889999999999999888865
No 78
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=97.11 E-value=0.0025 Score=60.18 Aligned_cols=135 Identities=14% Similarity=0.156 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHhcC--CeEEeCCcCh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHh
Q 024066 115 EDAYQAAKPLFLSMGK--NTIYCGGAGN-----GAAAKICNNLTMAVSMLGVSEALTLGQS------LGISASTLTKILN 181 (273)
Q Consensus 115 ~~~~~~~~~~l~~~~~--~i~~~G~~g~-----a~~~Kl~~n~~~~~~~~~~~Ea~~la~~------~Gl~~~~~~~~l~ 181 (273)
+++|.|+.+.++.... ...|.|+.+. ++.+|.+.|.+..+.+.+++|.+.+.++ .++|..++..+.+
T Consensus 271 ~AvfaR~~S~~k~~r~~~~~~~~g~~~~~~~~~~~~i~~v~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr 350 (459)
T PRK09287 271 EAVFARYLSSLKDQRVAASKVLSGPAAKFEGDKAEFIEDVRQALYASKIVSYAQGFALLRAASEEYGWDLDLGEIARIWR 350 (459)
T ss_pred HHHHHHhccccHHHHHHhhcccCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhC
Confidence 4677788887776532 2345676554 8999999999999999999999999988 4688899999998
Q ss_pred hcC-CcccccccCCCCCCcccCCCCCCC--CCCCcc--hhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHC
Q 024066 182 SSS-ARCWSSDSYNPVPGVMEGVPASRN--YGGGFA--SKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCEN 252 (273)
Q Consensus 182 ~~~-~~s~~~~~~~~~~~~~~~~~~~~~--~~~~f~--~~~~~KD~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~ 252 (273)
.+. -+||+++...+ .+.+...-.+ +++.|. ++.....+|.++..+-+.|+|+|.+..++..|+.-...
T Consensus 351 ~GcIIRs~lL~~i~~---a~~~~~~l~nl~~~~~~~~~i~~~~~~~R~vV~~a~~~gip~P~ls~aL~y~d~~~~~ 423 (459)
T PRK09287 351 GGCIIRAQFLQKITD---AYEANPDLANLLLDPYFKDILEEYQDALRRVVALAVQAGIPVPAFSSALSYYDSYRTA 423 (459)
T ss_pred CCCEEeHHHHHHHHH---HHHhCCCchhhcCCHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcC
Confidence 875 56666543221 1110000001 112222 33445567889999999999999999999777765443
No 79
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=97.09 E-value=0.054 Score=47.40 Aligned_cols=211 Identities=17% Similarity=0.150 Sum_probs=117.3
Q ss_pred CCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCC
Q 024066 5 MGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDS 84 (273)
Q Consensus 5 ~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~ 84 (273)
.|...+++..+++.++|+||+||.. ..+.+|+....+ . .++++||-.-..-+- ..+.+++..
T Consensus 48 ~g~~~~~~~~~~~~~advv~LavKP-q~~~~vl~~l~~-~-----~~~~lvISiaAGv~~--~~l~~~l~~--------- 109 (266)
T COG0345 48 YGVVTTTDNQEAVEEADVVFLAVKP-QDLEEVLSKLKP-L-----TKDKLVISIAAGVSI--ETLERLLGG--------- 109 (266)
T ss_pred cCCcccCcHHHHHhhCCEEEEEeCh-HhHHHHHHHhhc-c-----cCCCEEEEEeCCCCH--HHHHHHcCC---------
Confidence 4566677888999999999999995 677888865333 1 245677744333322 234444321
Q ss_pred CCCceEEEecCCCCHHHHhcCceEEEeec--CHHHHHHHHHHHHHhcCCeEEeCC--cChHHHHHHHHHHHHHHHHHHHH
Q 024066 85 WENPVMLDAPVSGGVLAAEAGTLTFMVGG--SEDAYQAAKPLFLSMGKNTIYCGG--AGNGAAAKICNNLTMAVSMLGVS 160 (273)
Q Consensus 85 ~~g~~~ldapv~G~~~~a~~g~l~~~vgG--~~~~~~~~~~~l~~~~~~i~~~G~--~g~a~~~Kl~~n~~~~~~~~~~~ 160 (273)
.. +---+--.+....+|...+..+- +++..+.+..+|+.+|. ++.+.+ .-....+ .-..=..+..+.
T Consensus 110 ---~~-vvR~MPNt~a~vg~g~t~i~~~~~~~~~~~~~v~~l~~~~G~-v~~v~E~~~da~Tai----sGSgPAyv~~~i 180 (266)
T COG0345 110 ---LR-VVRVMPNTPALVGAGVTAISANANVSEEDKAFVEALLSAVGK-VVEVEESLMDAVTAL----SGSGPAYVFLFI 180 (266)
T ss_pred ---Cc-eEEeCCChHHHHcCcceeeecCccCCHHHHHHHHHHHHhcCC-eEEechHHhhHHHHH----hcCCHHHHHHHH
Confidence 11 11123345556666664444433 45677889999999998 677765 2222222 111222345566
Q ss_pred HHHH-HHHHcCCCHHHHHHHHhhcCCccc-ccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChH
Q 024066 161 EALT-LGQSLGISASTLTKILNSSSARCW-SSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPL 238 (273)
Q Consensus 161 Ea~~-la~~~Gl~~~~~~~~l~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~g~~~~~ 238 (273)
|++. .+.+.|++.++-.+.......++. +......-|..+. ++=-+|+-+-- ..+...++.|++.-+
T Consensus 181 Eal~~agv~~Gl~~~~A~~l~~~t~~Gaakll~e~~~~p~~Lr----~~VtSPGGtTi-------agl~~le~~g~~~~v 249 (266)
T COG0345 181 EALADAGVRLGLPREEARELAAQTVAGAAKLLLESGEHPAELR----DQVTSPGGTTI-------AGLRVLEEDGFRGAV 249 (266)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH----HhCcCCCchHH-------HHHHHHHHhChHHHH
Confidence 6664 466899999998887766532211 1110000111111 11113322211 123344477888788
Q ss_pred HHHHHHHHHHHHHCC
Q 024066 239 TSQAQDIYAKLCENG 253 (273)
Q Consensus 239 ~~~~~~~~~~a~~~G 253 (273)
.++...-++++.+-|
T Consensus 250 ~~av~aa~~r~~el~ 264 (266)
T COG0345 250 IEAVEAAYKRSEELG 264 (266)
T ss_pred HHHHHHHHHHHHHhc
Confidence 888888888776643
No 80
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.08 E-value=0.012 Score=51.77 Aligned_cols=150 Identities=9% Similarity=0.048 Sum_probs=84.4
Q ss_pred CCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCC-CCHHHHHHHHHHHhhchhhhccCCC
Q 024066 7 VPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSST-IDPQTSRNISAAVSNCILKEKKDSW 85 (273)
Q Consensus 7 a~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST-~~P~~~~~l~~~~~~~g~~~~~g~~ 85 (273)
.+.+.+..++++++|+||+|+| +..+.+++.. +.+.+ ..+++||.... ++.+ ++.+.+..
T Consensus 52 ~~~~~~~~e~~~~aDvVilavp-p~~~~~vl~~---l~~~l--~~~~~ivS~~aGi~~~---~l~~~~~~---------- 112 (277)
T PRK06928 52 VELADNEAEIFTKCDHSFICVP-PLAVLPLLKD---CAPVL--TPDRHVVSIAAGVSLD---DLLEITPG---------- 112 (277)
T ss_pred eEEeCCHHHHHhhCCEEEEecC-HHHHHHHHHH---HHhhc--CCCCEEEEECCCCCHH---HHHHHcCC----------
Confidence 3456788889999999999999 4577888753 33322 23456665544 4444 44444321
Q ss_pred CCceEEEecCCCCHHHHhcCceEEEeec--CHHHHHHHHHHHHHhcCCeEEeCC--cChHHHHHHHHHHHHHHHHHHHHH
Q 024066 86 ENPVMLDAPVSGGVLAAEAGTLTFMVGG--SEDAYQAAKPLFLSMGKNTIYCGG--AGNGAAAKICNNLTMAVSMLGVSE 161 (273)
Q Consensus 86 ~g~~~ldapv~G~~~~a~~g~l~~~vgG--~~~~~~~~~~~l~~~~~~i~~~G~--~g~a~~~Kl~~n~~~~~~~~~~~E 161 (273)
.. +---+--.|....+|...+..+. +++..+.++.+|+.+|. ++++.+ .....++= ...-..+..+.|
T Consensus 113 --~~-vvR~MPN~~~~~g~g~t~~~~~~~~~~~~~~~v~~l~~~~G~-~~~v~E~~~d~~tal~----gsgPA~~~~~~~ 184 (277)
T PRK06928 113 --LQ-VSRLIPSLTSAVGVGTSLVAHAETVNEANKSRLEETLSHFSH-VMTIREENMDIASNLT----SSSPGFIAAIFE 184 (277)
T ss_pred --CC-EEEEeCccHHHHhhhcEEEecCCCCCHHHHHHHHHHHHhCCC-EEEEchhhCceeeeee----cCHHHHHHHHHH
Confidence 11 22223344555566654443332 34567789999999998 456643 22121111 111122334444
Q ss_pred HHH-HHHHc-CCCHHHHHHHHhhc
Q 024066 162 ALT-LGQSL-GISASTLTKILNSS 183 (273)
Q Consensus 162 a~~-la~~~-Gl~~~~~~~~l~~~ 183 (273)
++. .+.+. |++.++-.+++...
T Consensus 185 al~~a~~~~ggl~~~~a~~l~~~~ 208 (277)
T PRK06928 185 EFAEAAVRNSSLSDEEAFQFLNFA 208 (277)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHH
Confidence 443 35566 79999877777654
No 81
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=97.04 E-value=0.015 Score=51.56 Aligned_cols=214 Identities=12% Similarity=0.106 Sum_probs=109.7
Q ss_pred CCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCce
Q 024066 10 KETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPV 89 (273)
Q Consensus 10 ~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~~g~~ 89 (273)
.+++.++ +.+|+||+|++.. ++++++.. +.+.. ..+.+||.+... ......+.+.+.+... -. +..
T Consensus 58 ~~~~~~~-~~~d~vila~k~~-~~~~~~~~---l~~~l--~~~~~iv~~~nG-~~~~~~l~~~~~~~~i--~~----~~~ 123 (304)
T PRK06522 58 ADDPAEL-GPQDLVILAVKAY-QLPAALPS---LAPLL--GPDTPVLFLQNG-VGHLEELAAYIGPERV--LG----GVV 123 (304)
T ss_pred CCChhHc-CCCCEEEEecccc-cHHHHHHH---Hhhhc--CCCCEEEEecCC-CCcHHHHHHhcCcccE--EE----EEE
Confidence 4566665 8899999999976 55667653 33321 233455544433 2222334444322100 00 112
Q ss_pred EEEecCCCC--HHHHhcCceEEEeecCH---HHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHH-----------
Q 024066 90 MLDAPVSGG--VLAAEAGTLTFMVGGSE---DAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA----------- 153 (273)
Q Consensus 90 ~ldapv~G~--~~~a~~g~l~~~vgG~~---~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~~~----------- 153 (273)
+..+-..+. ......|. +.+|..+ +..+.+..+|+..+.++...-++-...-.|++.|..+.
T Consensus 124 ~~~~~~~~p~~v~~~~~g~--~~ig~~~~~~~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g 201 (304)
T PRK06522 124 THAAELEGPGVVRHTGGGR--LKIGEPDGESAAAEALADLLNAAGLDVEWSPDIRTEIWRKLWVNCVINPLTALLGCTNG 201 (304)
T ss_pred EEeeEecCCCEEEEcCCCC--EEEeCCCCCcHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhHHHHHhCCChh
Confidence 222212211 11122233 4455422 23556677777766655444447788888888775432
Q ss_pred ----------HHHHHHHHHHHHHHHcCCCH--HHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhHHHH
Q 024066 154 ----------VSMLGVSEALTLGQSLGISA--STLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKD 221 (273)
Q Consensus 154 ----------~~~~~~~Ea~~la~~~Gl~~--~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD 221 (273)
.....+.|...++++.|+++ +.+.+.+....... ....+.|+.. +..+.. .-++. =
T Consensus 202 ~l~~~~~~~~l~~~~~~E~~~v~~a~G~~~~~~~~~~~~~~~~~~~-----~~~~sSm~~D-~~~gr~---tEid~---i 269 (304)
T PRK06522 202 ELLADPDYRALIRALMEEVAAVAEAEGVHLSVEEVREYVRQVIQKT-----AANTSSMLQD-LEAGRP---TEIDA---I 269 (304)
T ss_pred HHhcCccHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhhcc-----CCCCchHHHH-HHcCCC---cccch---h
Confidence 23456889999999999764 44444333211000 0001112110 011111 00111 1
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 024066 222 LNLALASAKEVGVDCPLTSQAQDIYAKLCE 251 (273)
Q Consensus 222 ~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~ 251 (273)
...+++.++++|+++|..+...+.++...+
T Consensus 270 ~G~~v~~a~~~gv~~P~~~~l~~~~~~~~~ 299 (304)
T PRK06522 270 VGYVLRRGRKHGIPTPLNDALYGLLKAKES 299 (304)
T ss_pred ccHHHHHHHHcCCCCcHHHHHHHHHHHHHH
Confidence 344789999999999999998888765543
No 82
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=97.03 E-value=0.015 Score=52.54 Aligned_cols=151 Identities=13% Similarity=0.094 Sum_probs=88.2
Q ss_pred CCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCC
Q 024066 5 MGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDS 84 (273)
Q Consensus 5 ~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~ 84 (273)
.|.+.. |+.|++++||+|+++||+... .+++.. .+.+.+ +++++++-++-.+....+. ...+
T Consensus 60 ~G~~~~-s~~eaa~~ADVVvLaVPd~~~-~~V~~~--~I~~~L--k~g~iL~~a~G~~i~~~~~---~p~~--------- 121 (330)
T PRK05479 60 DGFEVL-TVAEAAKWADVIMILLPDEVQ-AEVYEE--EIEPNL--KEGAALAFAHGFNIHFGQI---VPPA--------- 121 (330)
T ss_pred CCCeeC-CHHHHHhcCCEEEEcCCHHHH-HHHHHH--HHHhcC--CCCCEEEECCCCChhhcee---ccCC---------
Confidence 466654 899999999999999998765 777732 365553 3566776555544444321 1100
Q ss_pred CCCceEEE-ecCCCCH-----HHHhcCceEEE-eecC--HHHHHHHHHHHHHhcCCeEE-eCC-cChHHHHHHH--HHHH
Q 024066 85 WENPVMLD-APVSGGV-----LAAEAGTLTFM-VGGS--EDAYQAAKPLFLSMGKNTIY-CGG-AGNGAAAKIC--NNLT 151 (273)
Q Consensus 85 ~~g~~~ld-apv~G~~-----~~a~~g~l~~~-vgG~--~~~~~~~~~~l~~~~~~i~~-~G~-~g~a~~~Kl~--~n~~ 151 (273)
++.++- +|=.-+. -....|-..++ +..+ .++.+.+..+++.+|..... +.. ...-.-..|. ..++
T Consensus 122 --~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~av~~d~t~~a~~~a~~l~~aiG~~~~g~~~ttf~~e~~~dl~geq~vl 199 (330)
T PRK05479 122 --DVDVIMVAPKGPGHLVRREYEEGGGVPCLIAVHQDASGNAKDLALAYAKGIGGTRAGVIETTFKEETETDLFGEQAVL 199 (330)
T ss_pred --CCcEEEeCCCCCchhhhhhhhcCCCceEEEEecCCCCHHHHHHHHHHHHHcCCCccceeeeeecccccccchhhHHHH
Confidence 122222 3433222 11344554555 5666 67889999999999986320 111 1111101111 2344
Q ss_pred HHHHHHHHHHHHHHHHHcCCCHHH
Q 024066 152 MAVSMLGVSEALTLGQSLGISAST 175 (273)
Q Consensus 152 ~~~~~~~~~Ea~~la~~~Gl~~~~ 175 (273)
..+...++..++......|.+|+.
T Consensus 200 ~gg~~~l~~~~~e~l~eaG~~pe~ 223 (330)
T PRK05479 200 CGGLTELIKAGFETLVEAGYQPEM 223 (330)
T ss_pred hhHHHHHHHHHHHHHHHcCCCHHH
Confidence 555567777778888999999875
No 83
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=97.02 E-value=0.0037 Score=59.17 Aligned_cols=135 Identities=14% Similarity=0.114 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHhcC--CeEEeCCcCh------HHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHH
Q 024066 115 EDAYQAAKPLFLSMGK--NTIYCGGAGN------GAAAKICNNLTMAVSMLGVSEALTLGQS------LGISASTLTKIL 180 (273)
Q Consensus 115 ~~~~~~~~~~l~~~~~--~i~~~G~~g~------a~~~Kl~~n~~~~~~~~~~~Ea~~la~~------~Gl~~~~~~~~l 180 (273)
.++|.|+.+.++.... ...|.|+.+. ++.+|.+.|.+..+.+.+++|.+.+.++ .++|..++.++.
T Consensus 278 ~av~~R~~S~~k~~r~~~~~~~~gp~~~~~~~~~~~~i~~l~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iW 357 (467)
T TIGR00873 278 ESVFARYLSSLKEERVAASKVLSGPLAPEPAVDKEEFIEDVRQALYASKIISYAQGFMLLREASEEYGWDLNLGEIALIW 357 (467)
T ss_pred HHHHHHhccccHHHHHHhhcccCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHh
Confidence 4567777777766432 1234565442 8999999999999999999999999988 889999999999
Q ss_pred hhcC-CcccccccCCCCCCcccCCCCCCC--CCCCcc--hhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHC
Q 024066 181 NSSS-ARCWSSDSYNPVPGVMEGVPASRN--YGGGFA--SKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCEN 252 (273)
Q Consensus 181 ~~~~-~~s~~~~~~~~~~~~~~~~~~~~~--~~~~f~--~~~~~KD~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~ 252 (273)
+.+. -+||+++...+ .+.+...-.+ +++.|. +......+|.++..+-+.|+|+|.+..++..|+.-...
T Consensus 358 r~GcIIrs~lL~~i~~---a~~~~~~l~~l~~~~~~~~~i~~~~~~~r~vV~~a~~~gip~P~ls~aL~y~~~~~s~ 431 (467)
T TIGR00873 358 RGGCIIRSGFLDKITK---AFAENPDLANLLLAPYFKDALKDAQSGWRRVVALAIEYGIPVPAFSAALSFYDGYRTA 431 (467)
T ss_pred CCCceeeHhHHHHHHH---HHHcCCChhhhcCCHHHHHHHHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcC
Confidence 9875 56665543221 1110000001 112222 33445667999999999999999999999888876653
No 84
>PRK08818 prephenate dehydrogenase; Provisional
Probab=96.86 E-value=0.027 Score=51.69 Aligned_cols=121 Identities=13% Similarity=0.186 Sum_probs=78.5
Q ss_pred CCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCce
Q 024066 10 KETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPV 89 (273)
Q Consensus 10 ~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~~g~~ 89 (273)
..++.+++++||+||+|+|-. .+.+++..-....+.+ +++.+|.|.+++--.-.+.+. +. +..
T Consensus 42 ~~~~~~~v~~aDlVilavPv~-~~~~~l~~l~~~~~~l--~~~~iVtDVgSvK~~i~~~~~----~~----------~~~ 104 (370)
T PRK08818 42 SLDPATLLQRADVLIFSAPIR-HTAALIEEYVALAGGR--AAGQLWLDVTSIKQAPVAAML----AS----------QAE 104 (370)
T ss_pred cCCHHHHhcCCCEEEEeCCHH-HHHHHHHHHhhhhcCC--CCCeEEEECCCCcHHHHHHHH----hc----------CCC
Confidence 456788999999999999975 5555665321121112 456899999999866665542 11 135
Q ss_pred EEE-ecCCCCHH-HHhcCceEEEeecC-HHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHH
Q 024066 90 MLD-APVSGGVL-AAEAGTLTFMVGGS-EDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKIC 147 (273)
Q Consensus 90 ~ld-apv~G~~~-~a~~g~l~~~vgG~-~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~ 147 (273)
|+- =|+.|+.. ..-++...+++-+. .+.++.++.+++.+|.+++.+.+-..=..+-.+
T Consensus 105 fVG~HPMaG~E~s~lf~g~~~iltp~~~~~~~~~v~~l~~~~Ga~v~~~~aeeHD~~~A~v 165 (370)
T PRK08818 105 VVGLHPMTAPPKSPTLKGRVMVVCEARLQHWSPWVQSLCSALQAECVYATPEHHDRVMALV 165 (370)
T ss_pred EEeeCCCCCCCCCcccCCCeEEEeCCCchhHHHHHHHHHHHcCCEEEEcCHHHHHHHHHHH
Confidence 666 58888753 33346656776654 345678899999999988888553333333334
No 85
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=96.73 E-value=0.04 Score=49.41 Aligned_cols=203 Identities=11% Similarity=0.081 Sum_probs=108.5
Q ss_pred HHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEEec
Q 024066 15 EVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAP 94 (273)
Q Consensus 15 e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~~g~~~ldap 94 (273)
+....+|+||+|++..+ +.+++..-..++ .+. .+|+.+-. .-+..+.+.+.+.+. + -..++.++.+.
T Consensus 68 ~~~~~~D~vilavK~~~-~~~~~~~l~~~~----~~~-~~iv~lqN-G~~~~e~l~~~~~~~----~--v~~g~~~~~a~ 134 (313)
T PRK06249 68 EDMPPCDWVLVGLKTTA-NALLAPLIPQVA----APD-AKVLLLQN-GLGVEEQLREILPAE----H--LLGGLCFICSN 134 (313)
T ss_pred hhcCCCCEEEEEecCCC-hHhHHHHHhhhc----CCC-CEEEEecC-CCCcHHHHHHHCCCC----c--EEEEeeeEeEe
Confidence 34668999999999874 355543212222 123 34443322 233334455544221 0 00023344444
Q ss_pred CCCCH--HHHhcCceEEEee---cC------HHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHH----------
Q 024066 95 VSGGV--LAAEAGTLTFMVG---GS------EDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA---------- 153 (273)
Q Consensus 95 v~G~~--~~a~~g~l~~~vg---G~------~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~~~---------- 153 (273)
..+.. .....|. +.+| |+ .+..+++..+|+.-+-.+....++-...-.|++.|..+.
T Consensus 135 ~~~pg~v~~~~~g~--~~iG~~~~~~~~~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~n~ltal~~~~~ 212 (313)
T PRK06249 135 RVGPGVIHHLAYGR--VNLGYHSGPAADDGITARVEEGAALFRAAGIDSQAMPDLAQARWQKLVWNIPYNGLSVLLNAST 212 (313)
T ss_pred cCCCeEEEECCCCc--EEEecCCCCcccchHHHHHHHHHHHHHhCCCCceeCchHHHHHHhHhheecchhHHHHHhCCCh
Confidence 33321 1122233 3333 32 345566777777777666666668888888998775432
Q ss_pred -----------HHHHHHHHHHHHHHHcCCCH-----HHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCC--cch
Q 024066 154 -----------VSMLGVSEALTLGQSLGISA-----STLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG--FAS 215 (273)
Q Consensus 154 -----------~~~~~~~Ea~~la~~~Gl~~-----~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~--f~~ 215 (273)
.....+.|+.+++++.|++. +.+++++...+.. .+.|+. |+..+ .-+
T Consensus 213 g~l~~~~~~~~l~~~~~~E~~~va~a~Gi~~~~~~~~~~~~~~~~~~~~---------~sSM~q------D~~~gr~tEi 277 (313)
T PRK06249 213 DPLMADPDSRALIRALMAEVIQGAAACGHTLPEGYADHMLAVTERMPDY---------RPSMYH------DFEEGRPLEL 277 (313)
T ss_pred HHHHhCccHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHhhcCCCC---------CChHHH------HHHCCCcccH
Confidence 23456889999999999873 2233333221110 112221 11111 112
Q ss_pred hhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 024066 216 KLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLC 250 (273)
Q Consensus 216 ~~~~KD~~~~~~~a~~~g~~~~~~~~~~~~~~~a~ 250 (273)
+. =...+++.++++|+++|..+...++++...
T Consensus 278 d~---i~G~vv~~a~~~Gi~~P~~~~l~~~l~~~e 309 (313)
T PRK06249 278 EA---IYANPLAAARAAGCAMPRVEMLYQALEFLD 309 (313)
T ss_pred HH---HhhHHHHHHHHhCCCCcHHHHHHHHHHHHH
Confidence 22 245678999999999999999988776543
No 86
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=96.72 E-value=0.032 Score=49.12 Aligned_cols=213 Identities=13% Similarity=0.112 Sum_probs=106.0
Q ss_pred CCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhhchhhhccCCCCCc
Q 024066 10 KETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNCILKEKKDSWENP 88 (273)
Q Consensus 10 ~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~-ST~~P~~~~~l~~~~~~~g~~~~~g~~~g~ 88 (273)
.+++.+ ....|+||+|++.. ++.+++.. +.+.+ ..+.+||-+ ..... -+.+.+.+... + ...|+
T Consensus 51 ~~~~~~-~~~~D~iiv~vKs~-~~~~~l~~---l~~~l--~~~~~iv~~qNG~g~--~~~l~~~~~~~----~--v~~g~ 115 (293)
T TIGR00745 51 ATSPEE-LPPADLVIITVKAY-QTEEAAAL---LLPLI--GKNTKVLFLQNGLGH--EERLRELLPAR----R--ILGGV 115 (293)
T ss_pred ccChhh-cCCCCEEEEeccch-hHHHHHHH---hHhhc--CCCCEEEEccCCCCC--HHHHHHHhCcc----C--EEEEE
Confidence 345555 56899999999987 56666643 33322 123444433 33333 23444444210 0 00012
Q ss_pred eEEEecCCCCHHHHhcCceEEEeecCH---HHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHH-------------
Q 024066 89 VMLDAPVSGGVLAAEAGTLTFMVGGSE---DAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM------------- 152 (273)
Q Consensus 89 ~~ldapv~G~~~~a~~g~l~~~vgG~~---~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~~------------- 152 (273)
.+..+-..+.-.-...+.-.+.+|..+ +..+++..+|+.-+-++....+.-...-.|++.|..+
T Consensus 116 ~~~~~~~~~pg~v~~~~~~~~~iG~~~~~~~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~ 195 (293)
T TIGR00745 116 VTHGAVREEPGVVHHAGLGATKIGDYVGENEAVEALAELLNEAGIPAELHGDILAAIWKKLLVNAAINPLTALLDCKNGE 195 (293)
T ss_pred EEEeeEEcCCcEEEEeccccEEEecCCCchHHHHHHHHHHHhCCCCCEecchHHHHHHHHHhheechhHHHHHHCCccce
Confidence 222222221100000111124555532 3345556666655555555556777888888877632
Q ss_pred --------HHHHHHHHHHHHHHHHcCCCH--HHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHH
Q 024066 153 --------AVSMLGVSEALTLGQSLGISA--STLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDL 222 (273)
Q Consensus 153 --------~~~~~~~~Ea~~la~~~Gl~~--~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~ 222 (273)
......+.|...++++.|+++ +.+.+.+......+. . ..+.|+. |+..+-.. -..-=.
T Consensus 196 l~~~~~~~~l~~~~~~E~~~v~~a~G~~~~~~~~~~~~~~~~~~~~--~---~~sSm~~------D~~~gr~t-Eid~i~ 263 (293)
T TIGR00745 196 LLENPEARELLRRLMDEVVRVARAEGVDLPDDEVEELVRAVIRMTA--E---NTSSMLQ------DLLRGRRT-EIDAIN 263 (293)
T ss_pred eccChhHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--C---CCChHHH------HHHcCCcc-hHHHhc
Confidence 233456889999999999764 333333332110000 0 0011211 11111000 011114
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHH
Q 024066 223 NLALASAKEVGVDCPLTSQAQDIYAKL 249 (273)
Q Consensus 223 ~~~~~~a~~~g~~~~~~~~~~~~~~~a 249 (273)
..+++.+++.|+++|..+...+.++..
T Consensus 264 G~~v~~a~~~gv~~P~~~~l~~~~~~~ 290 (293)
T TIGR00745 264 GAVVRLAEKLGIDAPVNRTLYALLKAL 290 (293)
T ss_pred cHHHHHHHHcCCCCChHHHHHHHHHHh
Confidence 467889999999999999888777543
No 87
>PLN02712 arogenate dehydrogenase
Probab=96.70 E-value=0.014 Score=57.78 Aligned_cols=117 Identities=15% Similarity=0.154 Sum_probs=76.5
Q ss_pred cCCCCCCCCHHHHH-hcCCEEEEeCCChHHHHHHHcCCCCcc-cCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhc
Q 024066 4 DMGVPTKETPFEVA-EASDVVITMLPSSSHVLDVYNGPNGLL-QGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEK 81 (273)
Q Consensus 4 ~~Ga~~~~s~~e~~-~~advvi~~v~~~~av~~v~~~~~g~l-~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~ 81 (273)
+.|+....++.+++ .++|+||+|+|. .++.+++.. +. +.+ +++.+|+|++|+.....+.+.+.+.+
T Consensus 92 ~~Gv~~~~d~~e~~~~~aDvViLavP~-~~~~~vl~~---l~~~~l--~~g~iVvDv~SvK~~~~~~l~~~l~~------ 159 (667)
T PLN02712 92 SLGVSFFLDPHDLCERHPDVILLCTSI-ISTENVLKS---LPLQRL--KRNTLFVDVLSVKEFAKNLLLDYLPE------ 159 (667)
T ss_pred HcCCEEeCCHHHHhhcCCCEEEEcCCH-HHHHHHHHh---hhhhcC--CCCeEEEECCCCcHHHHHHHHHhcCC------
Confidence 35777778888865 569999999996 577888764 22 222 35689999999987666666655422
Q ss_pred cCCCCCceEEE-ecCCCCHH--HHhcCceEEEee---cCH----HHHHHHHHHHHHhcCCeEEeCC
Q 024066 82 KDSWENPVMLD-APVSGGVL--AAEAGTLTFMVG---GSE----DAYQAAKPLFLSMGKNTIYCGG 137 (273)
Q Consensus 82 ~g~~~g~~~ld-apv~G~~~--~a~~g~l~~~vg---G~~----~~~~~~~~~l~~~~~~i~~~G~ 137 (273)
++.|+- =|+.|... ..-.+...++.+ +++ +.++.++.+++.+|.+++.+.+
T Consensus 160 -----~~~~v~~HPMaG~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~lGa~v~~ms~ 220 (667)
T PLN02712 160 -----DFDIICSHPMFGPQSAKHGWDGLRFVYEKVRIGNEELRVSRCKSFLEVFEREGCKMVEMSC 220 (667)
T ss_pred -----CCeEEeeCCcCCCccccchhccCcEEEeeccCCCccccHHHHHHHHHHHHHcCCEEEEeCH
Confidence 244544 68888752 122233344443 332 2345667999999998888754
No 88
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=96.66 E-value=0.00078 Score=53.65 Aligned_cols=60 Identities=13% Similarity=0.031 Sum_probs=42.6
Q ss_pred CCCCHHHHHhcCCEEEEeCCChHH-HHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 024066 9 TKETPFEVAEASDVVITMLPSSSH-VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 76 (273)
Q Consensus 9 ~~~s~~e~~~~advvi~~v~~~~a-v~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~ 76 (273)
...++.++++++|+||+|+|.+.. ++.+.+....+ +.+++++|+||+.+.+ ++.+.++++
T Consensus 71 ~~~~~~~~~~~~Dvvi~~~~~~~~~~~~~~~~~~~~------~~~~~v~D~~~~~~~~--~l~~~~~~~ 131 (155)
T cd01065 71 AYLDLEELLAEADLIINTTPVGMKPGDELPLPPSLL------KPGGVVYDVVYNPLET--PLLKEARAL 131 (155)
T ss_pred eecchhhccccCCEEEeCcCCCCCCCCCCCCCHHHc------CCCCEEEEcCcCCCCC--HHHHHHHHC
Confidence 345777788999999999999875 44443322111 3568999999996665 788877653
No 89
>PRK06436 glycerate dehydrogenase; Provisional
Probab=96.50 E-value=0.0036 Score=55.97 Aligned_cols=62 Identities=18% Similarity=0.216 Sum_probs=54.3
Q ss_pred CCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 10 KETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 10 ~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
..++.|++++||+|++|+|..++.+.++. .+.++.+ ++|.++||+|+..+-....+.+.+.+
T Consensus 164 ~~~l~ell~~aDiv~~~lp~t~~T~~li~--~~~l~~m--k~ga~lIN~sRG~~vd~~aL~~aL~~ 225 (303)
T PRK06436 164 YMEPEDIMKKSDFVLISLPLTDETRGMIN--SKMLSLF--RKGLAIINVARADVVDKNDMLNFLRN 225 (303)
T ss_pred cCCHHHHHhhCCEEEECCCCCchhhcCcC--HHHHhcC--CCCeEEEECCCccccCHHHHHHHHHc
Confidence 57899999999999999999999998874 3566665 46789999999999999999999976
No 90
>PRK07574 formate dehydrogenase; Provisional
Probab=96.47 E-value=0.0061 Score=56.22 Aligned_cols=67 Identities=13% Similarity=0.184 Sum_probs=58.1
Q ss_pred CCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 5 MGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 5 ~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
.|++...++.|+++.||+|++++|..++.+.++. ...++.+ ++|.++||++....-....+.+.+.+
T Consensus 234 ~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~--~~~l~~m--k~ga~lIN~aRG~iVDe~AL~~AL~s 300 (385)
T PRK07574 234 LGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFD--ADVLSRM--KRGSYLVNTARGKIVDRDAVVRALES 300 (385)
T ss_pred cCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhC--HHHHhcC--CCCcEEEECCCCchhhHHHHHHHHHh
Confidence 4666678999999999999999999999999884 3567765 56789999999999999999999976
No 91
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=96.47 E-value=0.023 Score=53.91 Aligned_cols=134 Identities=10% Similarity=0.088 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHhcC--CeEEeCCc--------ChHHHHHHHHHHHHHHHHHHHHHHHHHHH----Hc--CCCHHHHHH
Q 024066 115 EDAYQAAKPLFLSMGK--NTIYCGGA--------GNGAAAKICNNLTMAVSMLGVSEALTLGQ----SL--GISASTLTK 178 (273)
Q Consensus 115 ~~~~~~~~~~l~~~~~--~i~~~G~~--------g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~----~~--Gl~~~~~~~ 178 (273)
.+.|.|..+.++.... ...|.|+. +.++.+|.+.|.+..+.+.+++|.+.+-+ ++ ++|..++..
T Consensus 282 ~a~~~R~~S~~k~~r~~~~~~~~gp~~~~~~~~~~~~~~i~~v~~al~~~~i~ayaQGf~ll~~as~~y~w~ldl~~ia~ 361 (470)
T PTZ00142 282 ASVDARNISALKEERTKASSHLAGPNPANKTETEDKKYFIDDLKNALYCSKIISYTQGFFLIKEASKEFGWNLNLGEIAR 361 (470)
T ss_pred HHHHHHHhhhhHHHHHHhccccCCCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 3456777777766432 12345553 67999999999999999999999999877 34 899999999
Q ss_pred HHhhcC-CcccccccCCCCCCcccCCCCCCC--CCCCcc--hhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 024066 179 ILNSSS-ARCWSSDSYNPVPGVMEGVPASRN--YGGGFA--SKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCE 251 (273)
Q Consensus 179 ~l~~~~-~~s~~~~~~~~~~~~~~~~~~~~~--~~~~f~--~~~~~KD~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~ 251 (273)
+.+.+. -+||+++.... .+.+...-.+ +++.|. +......+|.++..+-+.|+|+|.+.+++..|+.-..
T Consensus 362 iWr~GcIIRs~lL~~i~~---a~~~~~~l~nl~~~~~~~~~i~~~~~~~R~vV~~a~~~gip~P~~s~aL~y~~s~~~ 436 (470)
T PTZ00142 362 IWRGGCIIRAVFLDRIKN---AFKKNPQLDLLFLDPDFNDELKNKQPSWRKVVSMATKNGIPTPAFSASLAYYQMYRS 436 (470)
T ss_pred HhCCCceeeHhHHHHHHH---HHhcCCChhhhcCCHHHHHHHHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Confidence 999875 56666543211 1110000000 112222 3344556789999999999999999999996665443
No 92
>PLN03139 formate dehydrogenase; Provisional
Probab=96.43 E-value=0.007 Score=55.84 Aligned_cols=67 Identities=15% Similarity=0.186 Sum_probs=58.4
Q ss_pred CCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 5 MGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 5 ~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
.|+...+++.|++++||+|++|+|..++.+.++.. ..++.+ ++|.++||++....-....+.+.+.+
T Consensus 241 ~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~--~~l~~m--k~ga~lIN~aRG~iVDe~AL~~AL~s 307 (386)
T PLN03139 241 TGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNK--ERIAKM--KKGVLIVNNARGAIMDTQAVADACSS 307 (386)
T ss_pred cCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCH--HHHhhC--CCCeEEEECCCCchhhHHHHHHHHHc
Confidence 46777789999999999999999999999998843 577765 56799999999999999999999976
No 93
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=96.43 E-value=0.0093 Score=50.03 Aligned_cols=123 Identities=17% Similarity=0.228 Sum_probs=74.9
Q ss_pred CCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCC---------------CHHHHHHHHHHHh
Q 024066 10 KETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI---------------DPQTSRNISAAVS 74 (273)
Q Consensus 10 ~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~---------------~P~~~~~l~~~~~ 74 (273)
..++.++++.+||||+.||-+ ++.+++.. +... .+|+|+||.+.- .-..++.+++.+.
T Consensus 51 ~~~~~dA~~~aDVVvLAVP~~-a~~~v~~~---l~~~---~~~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp 123 (211)
T COG2085 51 GGSNEDAAALADVVVLAVPFE-AIPDVLAE---LRDA---LGGKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLP 123 (211)
T ss_pred cCChHHHHhcCCEEEEeccHH-HHHhHHHH---HHHH---hCCeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCC
Confidence 457789999999999999975 55666643 3322 357999998874 1122333444332
Q ss_pred hchhhhccCCCCCceEEEecCCCCHHHHhcCceEEEeecCH-HHHHHHHHHHHHhcCCeEEeCCcChHHHHHH
Q 024066 75 NCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSE-DAYQAAKPLFLSMGKNTIYCGGAGNGAAAKI 146 (273)
Q Consensus 75 ~~g~~~~~g~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~-~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl 146 (273)
....- + -++-+.+-..-....-. ++..+++.||+ ++-+.+..+.+.+|-+-+.+|+..++..+--
T Consensus 124 ~akVV--k----AFn~i~a~~l~~~~~~~-~~~~v~vagDD~~Ak~~v~~L~~~iG~~~ld~G~L~~a~~le~ 189 (211)
T COG2085 124 GAKVV--K----AFNTIPAAVLADLAKPG-GRRDVLVAGDDAEAKAVVAELAEDIGFRPLDAGPLENARILEP 189 (211)
T ss_pred Ccchh--h----hhcccCHHHhccCCCcC-CceeEEEecCcHHHHHHHHHHHHhcCcceeecccccccccccc
Confidence 21000 0 02333333322211111 45677777765 6889999999999988888898766655543
No 94
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=96.26 E-value=0.021 Score=48.52 Aligned_cols=122 Identities=21% Similarity=0.222 Sum_probs=71.5
Q ss_pred CCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHH---------------HHHHHHHHHhh
Q 024066 11 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQ---------------TSRNISAAVSN 75 (273)
Q Consensus 11 ~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~---------------~~~~l~~~~~~ 75 (273)
.+..++++++|+||+|+|.. +..+++.. +.+. ..+++|||++..-+. .++++++.+..
T Consensus 60 ~~~~ea~~~aDvVilavp~~-~~~~~l~~---l~~~---l~~~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~ 132 (219)
T TIGR01915 60 ADNAEAAKRADVVILAVPWD-HVLKTLES---LRDE---LSGKLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPE 132 (219)
T ss_pred eChHHHHhcCCEEEEECCHH-HHHHHHHH---HHHh---ccCCEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCC
Confidence 46788899999999999976 55666643 3222 134789988665432 12445554421
Q ss_pred chhhhccCCCCCceEEEecCCCCHHHHhcCceEEEeecC-HHHHHHHHHHHHHh-cCCeEEeCCcChHHHHHH
Q 024066 76 CILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGS-EDAYQAAKPLFLSM-GKNTIYCGGAGNGAAAKI 146 (273)
Q Consensus 76 ~g~~~~~g~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~-~~~~~~~~~~l~~~-~~~i~~~G~~g~a~~~Kl 146 (273)
. .+ - -..+..+.+.+..++ . ......+++.|| +++-+++..+.+.+ |-+.+++|+...+-.+--
T Consensus 133 ~---~~-V-Vka~~~~~a~~~~~~-~-~~~~~~~~v~Gdd~~ak~~v~~L~~~~~G~~~vd~G~l~~a~~~e~ 198 (219)
T TIGR01915 133 T---SR-V-VAAFHNLSAVLLQDV-D-DEVDCDVLVCGDDEEAKEVVAELAGRIDGLRALDAGPLENAAIVES 198 (219)
T ss_pred C---Ce-E-eeccccCCHHHhcCC-C-CCCCCCEEEECCCHHHHHHHHHHHHhcCCCCcccCCchhhHHHHHh
Confidence 0 00 0 000222333333332 1 112345667776 56788899999999 888899998766655433
No 95
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=96.18 E-value=0.15 Score=45.05 Aligned_cols=107 Identities=13% Similarity=0.207 Sum_probs=76.6
Q ss_pred HHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEE-
Q 024066 14 FEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD- 92 (273)
Q Consensus 14 ~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~~g~~~ld- 92 (273)
.+++..+|+||+|||=. +..+++.. +.+++ ++|.+|.|.+++--.-.+.+.+...+ +.+|+-
T Consensus 59 ~~~~~~aD~VivavPi~-~~~~~l~~---l~~~l--~~g~iv~Dv~S~K~~v~~a~~~~~~~-----------~~~~vg~ 121 (279)
T COG0287 59 AEAAAEADLVIVAVPIE-ATEEVLKE---LAPHL--KKGAIVTDVGSVKSSVVEAMEKYLPG-----------DVRFVGG 121 (279)
T ss_pred hhhcccCCEEEEeccHH-HHHHHHHH---hcccC--CCCCEEEecccccHHHHHHHHHhccC-----------CCeeEec
Confidence 67778899999999975 55667653 44442 56789999999988877777665432 125665
Q ss_pred ecCCCC--HHHHhcCceEEEeecC---HHHHHHHHHHHHHhcCCeEEeCC
Q 024066 93 APVSGG--VLAAEAGTLTFMVGGS---EDAYQAAKPLFLSMGKNTIYCGG 137 (273)
Q Consensus 93 apv~G~--~~~a~~g~l~~~vgG~---~~~~~~~~~~l~~~~~~i~~~G~ 137 (273)
=|+.|+ ...--+++..++.=++ .+.+++++.+++.+|.+++++-+
T Consensus 122 HPM~G~~~~~~lf~~~~~vltp~~~~~~~~~~~~~~~~~~~ga~~v~~~~ 171 (279)
T COG0287 122 HPMFGPEADAGLFENAVVVLTPSEGTEKEWVEEVKRLWEALGARLVEMDA 171 (279)
T ss_pred CCCCCCcccccccCCCEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEcCh
Confidence 589998 4444455656665553 45788899999999998888855
No 96
>PRK08605 D-lactate dehydrogenase; Validated
Probab=96.06 E-value=0.0088 Score=54.18 Aligned_cols=66 Identities=18% Similarity=0.231 Sum_probs=53.7
Q ss_pred CCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 6 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 6 Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
+++..+++.|++++||+|++|+|.....+.++. .+.++.+ ++|.++||+|+..+-....+.+.+.+
T Consensus 187 ~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~--~~~l~~m--k~gailIN~sRG~~vd~~aL~~aL~~ 252 (332)
T PRK08605 187 YVDYKDTIEEAVEGADIVTLHMPATKYNHYLFN--ADLFKHF--KKGAVFVNCARGSLVDTKALLDALDN 252 (332)
T ss_pred hccccCCHHHHHHhCCEEEEeCCCCcchhhhcC--HHHHhcC--CCCcEEEECCCCcccCHHHHHHHHHh
Confidence 345567899999999999999999988776542 2356654 46789999999999999999999975
No 97
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=95.88 E-value=0.19 Score=43.51 Aligned_cols=155 Identities=19% Similarity=0.254 Sum_probs=99.5
Q ss_pred cccCCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHH-HHHHHhhchhhh
Q 024066 2 FSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRN-ISAAVSNCILKE 80 (273)
Q Consensus 2 l~~~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~-l~~~~~~~g~~~ 80 (273)
+.++|+++.++-.|+++..++.++..|=..+.-.+.. .++++. +.|.+|.++-|++|-.--. +...++-.
T Consensus 65 vedAGV~vv~dD~eaa~~~Ei~VLFTPFGk~T~~Iar---ei~~hv--pEgAVicnTCT~sp~vLy~~LE~~Lr~k---- 135 (340)
T COG4007 65 VEDAGVEVVSDDAEAAEHGEIHVLFTPFGKATFGIAR---EILEHV--PEGAVICNTCTVSPVVLYYSLEGELRTK---- 135 (340)
T ss_pred HHhcCcEEecCchhhhhcceEEEEecccchhhHHHHH---HHHhhC--cCCcEecccccCchhHHHHHhhhhhcCc----
Confidence 4678999999999999999999999999977777764 377774 6789999999999965444 43344321
Q ss_pred ccCCCCCce-EEEecCCCCHHHHhcCceEEEeec---------CHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHH
Q 024066 81 KKDSWENPV-MLDAPVSGGVLAAEAGTLTFMVGG---------SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNL 150 (273)
Q Consensus 81 ~~g~~~g~~-~ldapv~G~~~~a~~g~l~~~vgG---------~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~ 150 (273)
+.. -|+. +=-+.|-|.|.. . ..+++| .++..+++.++.+..|+..+.+ ++.--+++-=...+
T Consensus 136 R~d--VGvssmHPAgvPGtp~h----~-~yviagr~t~g~elATeEQi~r~velaes~Gk~~yv~-padv~s~VaDmg~l 207 (340)
T COG4007 136 RED--VGVSSMHPAGVPGTPQH----G-HYVIAGRSTEGKELATEEQIERCVELAESTGKEVYVL-PADVVSAVADMGVL 207 (340)
T ss_pred hhh--cCccccCCCCCCCCCCC----c-eEEEeccCCCceeeccHHHHHHHHHHHHhcCCceEec-CHHHHHHhhhhHHH
Confidence 110 0122 112335555542 2 344443 2566788999999999976544 43222223223445
Q ss_pred HHHHHHHHHHHHHHHHHH-cCCCH
Q 024066 151 TMAVSMLGVSEALTLGQS-LGISA 173 (273)
Q Consensus 151 ~~~~~~~~~~Ea~~la~~-~Gl~~ 173 (273)
+....++++.+-+..+.+ .|-+.
T Consensus 208 vtav~l~gvldyy~Vg~qIi~AP~ 231 (340)
T COG4007 208 VTAVALSGVLDYYYVGTQIIGAPK 231 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcH
Confidence 566667777777777763 45444
No 98
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.78 E-value=0.01 Score=52.70 Aligned_cols=42 Identities=10% Similarity=0.111 Sum_probs=34.7
Q ss_pred CCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCC
Q 024066 10 KETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 62 (273)
Q Consensus 10 ~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~ 62 (273)
..+++|++++||+||+|++++..+.+++. .+|.++||+|+..
T Consensus 193 t~~l~e~~~~ADIVIsavg~~~~v~~~~i-----------k~GaiVIDvgin~ 234 (301)
T PRK14194 193 STDAKALCRQADIVVAAVGRPRLIDADWL-----------KPGAVVIDVGINR 234 (301)
T ss_pred CCCHHHHHhcCCEEEEecCChhcccHhhc-----------cCCcEEEEecccc
Confidence 35799999999999999999988887762 3568999998654
No 99
>PRK13243 glyoxylate reductase; Reviewed
Probab=95.76 E-value=0.013 Score=53.16 Aligned_cols=62 Identities=15% Similarity=0.142 Sum_probs=53.6
Q ss_pred CCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 10 KETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 10 ~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
..++.|++++||+|++|+|..++.+.++.. ..++.+ ++|.++||+|+...-....+.+.+.+
T Consensus 195 ~~~l~ell~~aDiV~l~lP~t~~T~~~i~~--~~~~~m--k~ga~lIN~aRg~~vd~~aL~~aL~~ 256 (333)
T PRK13243 195 YRPLEELLRESDFVSLHVPLTKETYHMINE--ERLKLM--KPTAILVNTARGKVVDTKALVKALKE 256 (333)
T ss_pred ecCHHHHHhhCCEEEEeCCCChHHhhccCH--HHHhcC--CCCeEEEECcCchhcCHHHHHHHHHc
Confidence 358999999999999999999999988743 466665 56789999999999999999999976
No 100
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=94.82 E-value=0.028 Score=54.11 Aligned_cols=68 Identities=10% Similarity=0.108 Sum_probs=57.0
Q ss_pred CCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 024066 5 MGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 76 (273)
Q Consensus 5 ~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~ 76 (273)
.|++..+++.|++++||+|++|+|..++.+.++. ...++.+ ++|.++||++....-....+.+.+.+.
T Consensus 179 ~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~--~~~l~~m--k~ga~lIN~aRG~~vde~aL~~aL~~g 246 (525)
T TIGR01327 179 LGVELVDDLDELLARADFITVHTPLTPETRGLIG--AEELAKM--KKGVIIVNCARGGIIDEAALYEALEEG 246 (525)
T ss_pred cCCEEcCCHHHHHhhCCEEEEccCCChhhccCcC--HHHHhcC--CCCeEEEEcCCCceeCHHHHHHHHHcC
Confidence 4666667899999999999999999999988874 2466665 567899999999999999999999763
No 101
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=94.37 E-value=1.7 Score=38.18 Aligned_cols=114 Identities=19% Similarity=0.198 Sum_probs=76.3
Q ss_pred cCCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccC
Q 024066 4 DMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKD 83 (273)
Q Consensus 4 ~~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g 83 (273)
++|.++.++-.|+++++|++|+.+|-....-.++. .+++++ +.|.+|-+.-|++|-.--++-+.+..+ .
T Consensus 124 daGvkVtsDD~EAv~~aei~I~ftPfG~~q~~Iik---kii~~l--pEgAII~~tCTIpt~~ly~ilE~l~R~------D 192 (340)
T TIGR01723 124 DLGLKVTTDDREAVEDADIIITWLPKGNKQPDIIK---KFIDDI--PEGAIVTHACTIPTTKFAKIFEDLGRE------D 192 (340)
T ss_pred HcCceEecCcHHHhcCCCEEEEEcCCCCCchHHHH---HHHhhC--CCCCEEeccccCChHHHHHHHHhhCcc------c
Confidence 57999999999999999999999998764444443 245553 678899999999998766666654311 1
Q ss_pred CCCCc-eEEEecCCCCHHHHhcCceEEEee-cCHHHHHHHHHHHHHhcCCeEEe
Q 024066 84 SWENP-VMLDAPVSGGVLAAEAGTLTFMVG-GSEDAYQAAKPLFLSMGKNTIYC 135 (273)
Q Consensus 84 ~~~g~-~~ldapv~G~~~~a~~g~l~~~vg-G~~~~~~~~~~~l~~~~~~i~~~ 135 (273)
-|+ .|=-+.|-|.+ ++..+.-| .+++..+++-.+.+..++..|.+
T Consensus 193 --vgVsS~HPaaVPgt~-----~q~Yi~egyAtEEqI~klveL~~sa~k~ay~~ 239 (340)
T TIGR01723 193 --LNVTSYHPGCVPEMK-----GQVYIAEGYASEEAVNKLYELGKKARGKAFKM 239 (340)
T ss_pred --CCeeccCCCCCCCCC-----CceEeecccCCHHHHHHHHHHHHHhCCCeeec
Confidence 011 12223344443 34333322 26778888899999998876654
No 102
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=94.23 E-value=0.69 Score=41.59 Aligned_cols=108 Identities=18% Similarity=0.148 Sum_probs=60.3
Q ss_pred cCCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccC
Q 024066 4 DMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKD 83 (273)
Q Consensus 4 ~~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g 83 (273)
+.|++. .++.|++++||+|++++|+..+...+.. .+.+.+ .++.+|.-..-.+...-+ ..+..
T Consensus 45 ~~Gv~~-~s~~ea~~~ADiVvLaVpp~~~~~~v~~---ei~~~l--~~g~iVs~aaG~~i~~~~---~~~~~-------- 107 (314)
T TIGR00465 45 EDGFKV-GTVEEAIPQADLIMNLLPDEVQHEVYEA---EIQPLL--KEGKTLGFSHGFNIHFVQ---IVPPK-------- 107 (314)
T ss_pred HCCCEE-CCHHHHHhcCCEEEEeCCcHhHHHHHHH---HHHhhC--CCCcEEEEeCCccHhhcc---ccCCC--------
Confidence 446664 4688999999999999998756555443 244432 344554444444444332 22211
Q ss_pred CCCCc-eEEEecCCCCHH-----HHhcCceEEE-eec--CHHHHHHHHHHHHHhcCC
Q 024066 84 SWENP-VMLDAPVSGGVL-----AAEAGTLTFM-VGG--SEDAYQAAKPLFLSMGKN 131 (273)
Q Consensus 84 ~~~g~-~~ldapv~G~~~-----~a~~g~l~~~-vgG--~~~~~~~~~~~l~~~~~~ 131 (273)
+. .+.-+|=.-+.. ....|...++ ++- +.+..+.+..+++.+|..
T Consensus 108 ---~~~VvrvmPn~p~~~vr~~~~~G~G~~~l~a~~~~~~~~~~~~~~~~~~~iG~~ 161 (314)
T TIGR00465 108 ---DVDVVMVAPKGPGTLVREEYKEGFGVPTLIAVEQDPTGEAMAIALAYAKAIGGG 161 (314)
T ss_pred ---CCcEEEECCCCCcHHHHHHhhcCCCeeEEEEecCCCCHHHHHHHHHHHHHcCCC
Confidence 12 223344322211 0145554444 333 345778899999999985
No 103
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=94.07 E-value=0.048 Score=52.58 Aligned_cols=66 Identities=12% Similarity=0.084 Sum_probs=55.5
Q ss_pred CCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 5 MGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 5 ~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
.|++.+ ++.|++++||+|++|+|..++.+.++. .+.++.+ ++|.++||+|....-....+.+.+.+
T Consensus 181 ~g~~~~-~l~ell~~aDiV~l~lP~t~~t~~li~--~~~l~~m--k~ga~lIN~aRG~~vde~aL~~aL~~ 246 (526)
T PRK13581 181 LGVELV-SLDELLARADFITLHTPLTPETRGLIG--AEELAKM--KPGVRIINCARGGIIDEAALAEALKS 246 (526)
T ss_pred cCCEEE-cHHHHHhhCCEEEEccCCChHhhcCcC--HHHHhcC--CCCeEEEECCCCceeCHHHHHHHHhc
Confidence 455555 899999999999999999999998874 2466665 56789999999999999999999876
No 104
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=94.06 E-value=2 Score=38.46 Aligned_cols=212 Identities=12% Similarity=0.129 Sum_probs=114.5
Q ss_pred HHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEE
Q 024066 13 PFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD 92 (273)
Q Consensus 13 ~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~~g~~~ld 92 (273)
..+....+|+||+++... ++++++.. +.+.. .+ .++|-+--..-+.-+++.+.+... . ...|+.+.-
T Consensus 61 ~~~~~~~~Dlviv~vKa~-q~~~al~~---l~~~~--~~-~t~vl~lqNG~g~~e~l~~~~~~~----~--il~G~~~~~ 127 (307)
T COG1893 61 DAEALGPADLVIVTVKAY-QLEEALPS---LAPLL--GP-NTVVLFLQNGLGHEEELRKILPKE----T--VLGGVTTHG 127 (307)
T ss_pred ChhhcCCCCEEEEEeccc-cHHHHHHH---hhhcC--CC-CcEEEEEeCCCcHHHHHHHhCCcc----e--EEEEEeeee
Confidence 345556899999999987 55666643 33321 22 233333333333333566555331 0 000111111
Q ss_pred ecCC--CCHHHHhcCc--eEEEeecCHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHH---------------
Q 024066 93 APVS--GGVLAAEAGT--LTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA--------------- 153 (273)
Q Consensus 93 apv~--G~~~~a~~g~--l~~~vgG~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~~~--------------- 153 (273)
+--. |.......|. +..+.|+.++.++.+..+|+.-+-++.+..++-...-.|++.|..+.
T Consensus 128 a~~~~~g~v~~~g~g~~~ig~~~~~~~~~~~~i~~~~~~a~~~~~~~~di~~~~w~Kl~~N~~inpltall~~~~g~l~~ 207 (307)
T COG1893 128 AVREGPGHVVHTGLGDTVIGELRGGRDELVKALAELFKEAGLEVELHPDILAAIWRKLVVNAAINPLTALLDCNNGELLE 207 (307)
T ss_pred eEecCCceEEEecCCcEEEccCCCCchHHHHHHHHHHHhCCCCeEEcHHHHHHHHHHHHhhhccchhhhhhcCCchHHhc
Confidence 1111 1111111122 23444555667788888887777777766668889999999887655
Q ss_pred ------HHHHHHHHHHHHHHHcC--CCHH---HHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHH
Q 024066 154 ------VSMLGVSEALTLGQSLG--ISAS---TLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDL 222 (273)
Q Consensus 154 ------~~~~~~~Ea~~la~~~G--l~~~---~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~ 222 (273)
.....+.|....+++.| ++.+ .+..+.....+ .. ++.|.. |+..+ .-.-.--=.
T Consensus 208 ~~~~~~l~~~~~~E~~~v~~~~g~~~~~~~~~~v~~~~~~~~~-----~~---~sSM~q------Dl~~g-r~tEid~i~ 272 (307)
T COG1893 208 NPEARALIRALVAEVVAVARAEGVELPEEVVERVLAVIRATDA-----EN---YSSMLQ------DLEKG-RPTEIDAIN 272 (307)
T ss_pred ChhHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhccc-----cc---CchHHH------HHHcC-CcccHHHHh
Confidence 23456789999999999 4553 23333333210 00 111111 11100 000001113
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHHHC
Q 024066 223 NLALASAKEVGVDCPLTSQAQDIYAKLCEN 252 (273)
Q Consensus 223 ~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~ 252 (273)
..+++.++..|+++|..+...++.+.....
T Consensus 273 G~vv~~a~~~gi~~P~~~~L~~lvk~~e~~ 302 (307)
T COG1893 273 GAVVRLAKKHGLATPVNDTLYALLKAKEAE 302 (307)
T ss_pred hHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 457899999999999999999988876653
No 105
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.04 E-value=0.079 Score=47.15 Aligned_cols=40 Identities=13% Similarity=0.140 Sum_probs=33.2
Q ss_pred CHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCC
Q 024066 12 TPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 62 (273)
Q Consensus 12 s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~ 62 (273)
+++|++++||+||+|++++..+++++ + .+|.+|||+++..
T Consensus 194 ~l~e~~~~ADIVIsavg~~~~v~~~~------l-----k~GavVIDvGin~ 233 (296)
T PRK14188 194 DLPAVCRRADILVAAVGRPEMVKGDW------I-----KPGATVIDVGINR 233 (296)
T ss_pred CHHHHHhcCCEEEEecCChhhcchhe------e-----cCCCEEEEcCCcc
Confidence 68999999999999999998877765 1 3568999988654
No 106
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=93.97 E-value=2.2 Score=37.45 Aligned_cols=114 Identities=18% Similarity=0.182 Sum_probs=77.5
Q ss_pred cCCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccC
Q 024066 4 DMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKD 83 (273)
Q Consensus 4 ~~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g 83 (273)
++|.++.++-.|+++++|++|+.+|-....-.++. .+++++ +.|.+|-+.-|++|-.--++-+.+..+ .
T Consensus 126 daGvkVtsDD~EAvk~aei~I~ftPfG~~t~~Iik---ki~~~i--pEgAII~~tCTIpt~~ly~~le~l~R~------D 194 (342)
T PRK00961 126 DLGLKVTTDDREAVADADIVITWLPKGGMQPDIIE---KFADDI--KEGAIVTHACTIPTTKFAKIFKDLGRD------D 194 (342)
T ss_pred HcCceEecCcHHHhcCCCEEEEecCCCCCchHHHH---HHHhhC--CCCCEEeccccCCHHHHHHHHHHhCcc------c
Confidence 57999999999999999999999998774444543 255553 678899999999998777666654321 1
Q ss_pred CCCCc-eEEEecCCCCHHHHhcCceEEEee-cCHHHHHHHHHHHHHhcCCeEEe
Q 024066 84 SWENP-VMLDAPVSGGVLAAEAGTLTFMVG-GSEDAYQAAKPLFLSMGKNTIYC 135 (273)
Q Consensus 84 ~~~g~-~~ldapv~G~~~~a~~g~l~~~vg-G~~~~~~~~~~~l~~~~~~i~~~ 135 (273)
-|+ .|=-+.|-|.+ |+..+--| .+++..+++-.+.+..++..|.+
T Consensus 195 --vgIsS~HPaaVPgt~-----Gq~~i~egyAtEEqI~klveL~~sa~k~ay~~ 241 (342)
T PRK00961 195 --LNVTSYHPGAVPEMK-----GQVYIAEGYADEEAVEKLYEIGKKARGNAFKM 241 (342)
T ss_pred --CCeeccCCCCCCCCC-----CceecccccCCHHHHHHHHHHHHHhCCCeeec
Confidence 012 22224455555 44222111 25678888889999999876654
No 107
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=93.78 E-value=0.05 Score=42.19 Aligned_cols=58 Identities=19% Similarity=0.175 Sum_probs=30.6
Q ss_pred CCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHH
Q 024066 6 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSR 67 (273)
Q Consensus 6 Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~ 67 (273)
+.....++.|+++++|++|++|||+ ++.+|..+ +.......++++|+=||-..+....
T Consensus 55 ~~~~~~~~~~~~~~aDlv~iavpDd-aI~~va~~---La~~~~~~~g~iVvHtSGa~~~~vL 112 (127)
T PF10727_consen 55 GAGAILDLEEILRDADLVFIAVPDD-AIAEVAEQ---LAQYGAWRPGQIVVHTSGALGSDVL 112 (127)
T ss_dssp TT-----TTGGGCC-SEEEE-S-CC-HHHHHHHH---HHCC--S-TT-EEEES-SS--GGGG
T ss_pred ccccccccccccccCCEEEEEechH-HHHHHHHH---HHHhccCCCCcEEEECCCCChHHhh
Confidence 4455667888999999999999998 66777653 3332112356899988877666443
No 108
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=93.76 E-value=0.069 Score=40.75 Aligned_cols=40 Identities=23% Similarity=0.058 Sum_probs=28.0
Q ss_pred hcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCH
Q 024066 18 EASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDP 63 (273)
Q Consensus 18 ~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P 63 (273)
.++|+||+|+|++...+.+. .+... ...|++|||+|+.-.
T Consensus 64 ~~~DvV~~~~~~~~~~~~~~----~~~~~--~~~g~~viD~s~~~~ 103 (122)
T smart00859 64 LAVDIVFLALPHGVSKEIAP----LLPKA--AEAGVKVIDLSSAFR 103 (122)
T ss_pred cCCCEEEEcCCcHHHHHHHH----HHHhh--hcCCCEEEECCcccc
Confidence 48999999999987766432 12222 135689999998743
No 109
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=93.61 E-value=0.028 Score=40.79 Aligned_cols=49 Identities=22% Similarity=0.344 Sum_probs=33.2
Q ss_pred CCCCCCC-CHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCC
Q 024066 5 MGVPTKE-TPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSST 60 (273)
Q Consensus 5 ~Ga~~~~-s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST 60 (273)
.|+.... +..|+++++|+||+||+.. ++.+++.. + .. ..+++++|+.+.
T Consensus 46 ~~~~~~~~~~~~~~~~advvilav~p~-~~~~v~~~---i-~~--~~~~~~vis~~a 95 (96)
T PF03807_consen 46 YGVQATADDNEEAAQEADVVILAVKPQ-QLPEVLSE---I-PH--LLKGKLVISIAA 95 (96)
T ss_dssp CTTEEESEEHHHHHHHTSEEEE-S-GG-GHHHHHHH---H-HH--HHTTSEEEEEST
T ss_pred hccccccCChHHhhccCCEEEEEECHH-HHHHHHHH---H-hh--ccCCCEEEEeCC
Confidence 3555555 8999999999999999975 66777753 3 22 135689998753
No 110
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=93.48 E-value=0.13 Score=46.29 Aligned_cols=61 Identities=18% Similarity=0.225 Sum_probs=51.5
Q ss_pred CCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 11 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 11 ~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
+++.+++++||+|++|+|..++.+.++.. +.++.+ ++|.++||++=...=.-..|.+.+.+
T Consensus 182 ~~l~e~l~~aDvvv~~lPlt~~T~~li~~--~~l~~m--k~ga~lIN~aRG~vVde~aL~~aL~~ 242 (312)
T PRK15469 182 EELSAFLSQTRVLINLLPNTPETVGIINQ--QLLEQL--PDGAYLLNLARGVHVVEDDLLAALDS 242 (312)
T ss_pred ccHHHHHhcCCEEEECCCCCHHHHHHhHH--HHHhcC--CCCcEEEECCCccccCHHHHHHHHhc
Confidence 57889999999999999999999988853 466665 46789999999888888888888876
No 111
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=93.33 E-value=0.15 Score=46.12 Aligned_cols=64 Identities=13% Similarity=0.288 Sum_probs=52.7
Q ss_pred CCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 8 PTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 8 ~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
+..+++.+++++||+|++|+|..++.+.++. ..+++.+ ++|.++||++-..--....+.+.+.+
T Consensus 187 ~~~~~l~ell~~aDiVil~lP~t~~t~~li~--~~~l~~m--k~gavlIN~aRG~~vd~~aL~~aL~~ 250 (330)
T PRK12480 187 TYKDSVKEAIKDADIISLHVPANKESYHLFD--KAMFDHV--KKGAILVNAARGAVINTPDLIAAVND 250 (330)
T ss_pred hccCCHHHHHhcCCEEEEeCCCcHHHHHHHh--HHHHhcC--CCCcEEEEcCCccccCHHHHHHHHHc
Confidence 3456899999999999999999998888774 3566665 46789999999888888888888875
No 112
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.10 E-value=0.11 Score=45.78 Aligned_cols=42 Identities=17% Similarity=0.228 Sum_probs=34.3
Q ss_pred CCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCC
Q 024066 10 KETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 62 (273)
Q Consensus 10 ~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~ 62 (273)
+.++++.+++||+||++++.+..++..+. .+|.++||+|+..
T Consensus 192 t~~l~~~~~~ADIVI~avg~~~~v~~~~i-----------k~GavVIDvgin~ 233 (284)
T PRK14179 192 TRNLAEVARKADILVVAIGRGHFVTKEFV-----------KEGAVVIDVGMNR 233 (284)
T ss_pred CCCHHHHHhhCCEEEEecCccccCCHHHc-----------cCCcEEEEeccee
Confidence 45688999999999999999998887652 3568999988654
No 113
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=92.59 E-value=1.2 Score=44.56 Aligned_cols=140 Identities=19% Similarity=0.117 Sum_probs=82.8
Q ss_pred CCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEE--EcCCCCHHHHHHHHHHHhhchhhhccCCC
Q 024066 8 PTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLI--DSSTIDPQTSRNISAAVSNCILKEKKDSW 85 (273)
Q Consensus 8 ~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iii--d~ST~~P~~~~~l~~~~~~~g~~~~~g~~ 85 (273)
+..++. +++++||+||=++|.+-+++.-++.. +-+. .+++ +|+ |+||.++. ++++.+.. .
T Consensus 374 ~~~~~~-~~~~~adlViEav~E~l~~K~~v~~~--l~~~--~~~~-~ilasnTS~l~i~---~la~~~~~------p--- 435 (699)
T TIGR02440 374 TGTTDY-RGFKDVDIVIEAVFEDLALKHQMVKD--IEQE--CAAH-TIFASNTSSLPIG---QIAAAASR------P--- 435 (699)
T ss_pred EEeCCh-HHhccCCEEEEeccccHHHHHHHHHH--HHhh--CCCC-cEEEeCCCCCCHH---HHHHhcCC------c---
Confidence 345565 56789999999999999887654431 2222 1233 444 44455554 44444421 1
Q ss_pred CCceEEEecCCCCHHHHhcCceEEEeec---CHHHHHHHHHHHHHhcCCeEEeCC-cChHHHHHHHHHHHHHHHHHHHHH
Q 024066 86 ENPVMLDAPVSGGVLAAEAGTLTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSE 161 (273)
Q Consensus 86 ~g~~~ldapv~G~~~~a~~g~l~~~vgG---~~~~~~~~~~~l~~~~~~i~~~G~-~g~a~~~Kl~~n~~~~~~~~~~~E 161 (273)
-+++-.=-+-.|.. -.++=++.| ++++++.+..+++.+++..+.+.+ +| .+.|=+. ...+.|
T Consensus 436 --~r~~g~HffnP~~~---~~lVEvv~g~~T~~~~~~~~~~~~~~~gk~pv~v~d~pG------fi~nRl~---~~~~~E 501 (699)
T TIGR02440 436 --ENVIGLHYFSPVEK---MPLVEVIPHAGTSEQTIATTVALAKKQGKTPIVVADKAG------FYVNRIL---APYMNE 501 (699)
T ss_pred --ccEEEEecCCcccc---CceEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEccccc------hHHHHHH---HHHHHH
Confidence 12322222222211 133434443 468999999999999999888876 55 3444433 356788
Q ss_pred HHHHHHHcCCCHHHHHHHH
Q 024066 162 ALTLGQSLGISASTLTKIL 180 (273)
Q Consensus 162 a~~la~~~Gl~~~~~~~~l 180 (273)
++.+.+ .|++++++=.++
T Consensus 502 a~~l~~-~G~~~~dID~a~ 519 (699)
T TIGR02440 502 AARLLL-EGEPVEHIDKAL 519 (699)
T ss_pred HHHHHH-CCCCHHHHHHHH
Confidence 888877 567887654444
No 114
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=92.27 E-value=0.14 Score=46.06 Aligned_cols=46 Identities=22% Similarity=0.303 Sum_probs=33.9
Q ss_pred CCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEE
Q 024066 5 MGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLI 56 (273)
Q Consensus 5 ~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iii 56 (273)
.|+++ .|++|++++||+|++++|++++ +.++. .++++.+ ++|.+++
T Consensus 58 ~G~~v-~sl~Eaak~ADVV~llLPd~~t-~~V~~--~eil~~M--K~GaiL~ 103 (335)
T PRK13403 58 DGFEV-MSVSEAVRTAQVVQMLLPDEQQ-AHVYK--AEVEENL--REGQMLL 103 (335)
T ss_pred cCCEE-CCHHHHHhcCCEEEEeCCChHH-HHHHH--HHHHhcC--CCCCEEE
Confidence 46654 4899999999999999999655 77875 2477765 3455554
No 115
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=92.15 E-value=1.4 Score=44.12 Aligned_cols=140 Identities=17% Similarity=0.114 Sum_probs=82.4
Q ss_pred CCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEE--EcCCCCHHHHHHHHHHHhhchhhhccCCCC
Q 024066 9 TKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLI--DSSTIDPQTSRNISAAVSNCILKEKKDSWE 86 (273)
Q Consensus 9 ~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iii--d~ST~~P~~~~~l~~~~~~~g~~~~~g~~~ 86 (273)
.+++. +++++||+||=+++.+-.++.-++.. +-+.. +++ .|+ |+|+.++. +|++.+.. .
T Consensus 380 ~~~~~-~~~~~aDlViEav~E~~~~K~~v~~~--le~~~--~~~-~ilasnTS~l~i~---~la~~~~~------p---- 440 (708)
T PRK11154 380 GTTDY-RGFKHADVVIEAVFEDLALKQQMVAE--VEQNC--APH-TIFASNTSSLPIG---QIAAAAAR------P---- 440 (708)
T ss_pred EeCCh-HHhccCCEEeecccccHHHHHHHHHH--HHhhC--CCC-cEEEECCCCCCHH---HHHHhcCc------c----
Confidence 34555 56789999999999999887655432 32221 233 444 44444444 44444421 1
Q ss_pred CceEEEecCCCCHHHHhcCceEEEeec---CHHHHHHHHHHHHHhcCCeEEeCC-cChHHHHHHHHHHHHHHHHHHHHHH
Q 024066 87 NPVMLDAPVSGGVLAAEAGTLTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEA 162 (273)
Q Consensus 87 g~~~ldapv~G~~~~a~~g~l~~~vgG---~~~~~~~~~~~l~~~~~~i~~~G~-~g~a~~~Kl~~n~~~~~~~~~~~Ea 162 (273)
-+|+-.=.+..+... .++=++-| ++++++.+..+++.+++..+.+.+ +| .+.|=+. ...+.|+
T Consensus 441 -~r~ig~Hff~P~~~~---~lVEvv~g~~Ts~~~~~~~~~~~~~~gk~pv~v~d~pG------fi~nRl~---~~~~~EA 507 (708)
T PRK11154 441 -EQVIGLHYFSPVEKM---PLVEVIPHAKTSAETIATTVALAKKQGKTPIVVRDGAG------FYVNRIL---APYINEA 507 (708)
T ss_pred -cceEEEecCCccccC---ceEEEECCCCCCHHHHHHHHHHHHHcCCceEEEeccCc------HHHHHHH---HHHHHHH
Confidence 123332222222111 23333333 568999999999999998888876 55 2334333 4567888
Q ss_pred HHHHHHcCCCHHHHHHHHh
Q 024066 163 LTLGQSLGISASTLTKILN 181 (273)
Q Consensus 163 ~~la~~~Gl~~~~~~~~l~ 181 (273)
+.+.++ |++++++=.++.
T Consensus 508 ~~lv~e-Gv~~~dID~a~~ 525 (708)
T PRK11154 508 ARLLLE-GEPIEHIDAALV 525 (708)
T ss_pred HHHHHc-CCCHHHHHHHHH
Confidence 888886 788876544443
No 116
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=91.72 E-value=0.27 Score=45.93 Aligned_cols=66 Identities=17% Similarity=0.111 Sum_probs=54.9
Q ss_pred CCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 6 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 6 Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
++..+.++.|++++||+|.+++|-.++.+.++.. ..++.+ ++|.++||++....-....+.+.+.+
T Consensus 190 ~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~--~~l~~m--k~ga~lIN~aRG~~vde~aL~~aL~~ 255 (409)
T PRK11790 190 NARQVGSLEELLAQSDVVSLHVPETPSTKNMIGA--EELALM--KPGAILINASRGTVVDIDALADALKS 255 (409)
T ss_pred CceecCCHHHHHhhCCEEEEcCCCChHHhhccCH--HHHhcC--CCCeEEEECCCCcccCHHHHHHHHHc
Confidence 3455679999999999999999999988887743 355554 56789999999999999999999876
No 117
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=91.70 E-value=2.3 Score=42.63 Aligned_cols=143 Identities=15% Similarity=0.105 Sum_probs=84.7
Q ss_pred CCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEE--EcCCCCHHHHHHHHHHHhhchhhhccCCC
Q 024066 8 PTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLI--DSSTIDPQTSRNISAAVSNCILKEKKDSW 85 (273)
Q Consensus 8 ~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iii--d~ST~~P~~~~~l~~~~~~~g~~~~~g~~ 85 (273)
+..++. +.+++||+||=+++.+-+++.-++.. +-+.. +++ +|+ |+||.++. ++++.+.. .
T Consensus 382 ~~~~~~-~~~~~aDlViEav~E~l~~K~~vf~~--l~~~~--~~~-~ilasNTSsl~i~---~la~~~~~------p--- 443 (715)
T PRK11730 382 RPTLDY-AGFERVDVVVEAVVENPKVKAAVLAE--VEQKV--RED-TILASNTSTISIS---LLAKALKR------P--- 443 (715)
T ss_pred EEeCCH-HHhcCCCEEEecccCcHHHHHHHHHH--HHhhC--CCC-cEEEEcCCCCCHH---HHHhhcCC------C---
Confidence 334555 55789999999999999987655432 22221 233 444 44444444 45554431 1
Q ss_pred CCceEEEecCCCCHHHHhcCceEEEeec---CHHHHHHHHHHHHHhcCCeEEeCC-cChHHHHHHHHHHHHHHHHHHHHH
Q 024066 86 ENPVMLDAPVSGGVLAAEAGTLTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSE 161 (273)
Q Consensus 86 ~g~~~ldapv~G~~~~a~~g~l~~~vgG---~~~~~~~~~~~l~~~~~~i~~~G~-~g~a~~~Kl~~n~~~~~~~~~~~E 161 (273)
-+++-.=.+-.++.. .++=++-| ++++++.+..+++.+++..+.+.+ +| .+.|=+.. ..+.|
T Consensus 444 --~r~~g~Hff~P~~~~---~lVEvv~g~~T~~~~~~~~~~~~~~lgk~pv~v~d~pG------fv~nRi~~---~~~~e 509 (715)
T PRK11730 444 --ENFCGMHFFNPVHRM---PLVEVIRGEKTSDETIATVVAYASKMGKTPIVVNDCPG------FFVNRVLF---PYFAG 509 (715)
T ss_pred --ccEEEEecCCccccc---ceEEeeCCCCCCHHHHHHHHHHHHHhCCceEEecCcCc------hhHHHHHH---HHHHH
Confidence 123332222222211 23323333 578999999999999999888877 66 34455433 35678
Q ss_pred HHHHHHHcCCCHHHHHHHHhhc
Q 024066 162 ALTLGQSLGISASTLTKILNSS 183 (273)
Q Consensus 162 a~~la~~~Gl~~~~~~~~l~~~ 183 (273)
++.+.++. .+++++=.++..+
T Consensus 510 a~~lv~~G-a~~e~ID~a~~~~ 530 (715)
T PRK11730 510 FSQLLRDG-ADFRQIDKVMEKQ 530 (715)
T ss_pred HHHHHHcC-CCHHHHHHHHHhh
Confidence 88888754 8888765555543
No 118
>PRK06141 ornithine cyclodeaminase; Validated
Probab=91.20 E-value=0.091 Score=47.21 Aligned_cols=58 Identities=10% Similarity=-0.008 Sum_probs=42.9
Q ss_pred CCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 7 VPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 7 a~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
+..++++.+++++||+|++|.+.+ +.++.. ..+ .+| .+||+++.++...+++...+.+
T Consensus 177 ~~~~~~~~~av~~aDIVi~aT~s~---~pvl~~--~~l-----~~g-~~i~~ig~~~~~~~El~~~~~~ 234 (314)
T PRK06141 177 AEVVTDLEAAVRQADIISCATLST---EPLVRG--EWL-----KPG-THLDLVGNFTPDMRECDDEAIR 234 (314)
T ss_pred eEEeCCHHHHHhcCCEEEEeeCCC---CCEecH--HHc-----CCC-CEEEeeCCCCcccccCCHHHHh
Confidence 566789999999999998777765 334332 111 344 4899999999999999988765
No 119
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=90.74 E-value=4.2 Score=36.23 Aligned_cols=134 Identities=13% Similarity=0.040 Sum_probs=72.1
Q ss_pred EEeecC-HHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHc
Q 024066 109 FMVGGS-EDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA------------------VSMLGVSEALTLGQSL 169 (273)
Q Consensus 109 ~~vgG~-~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~~~------------------~~~~~~~Ea~~la~~~ 169 (273)
+.+|.. .+..+++..+|..-+-...+..++-...-.||+.|..+. .....+.|...++++.
T Consensus 147 ~~~G~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~~l~~E~~~va~a~ 226 (305)
T PRK05708 147 TWLGDPRNPTAPAWLDDLREAGIPHEWTVDILTRLWRKLALNCAINPLTVLHDCRNGGLLEHAQEVAALCAELSELLRRC 226 (305)
T ss_pred EEEcCCCCcchHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHccccHhHHhhCCCCcchhcCHHHHHHHHHHHHHHHHHc
Confidence 445532 233455666666555444544457777888888776321 2356688999999999
Q ss_pred CCCH--HHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 024066 170 GISA--STLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYA 247 (273)
Q Consensus 170 Gl~~--~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~g~~~~~~~~~~~~~~ 247 (273)
|++. +.+.+.+..-.... ... .+.|+.. +..+.- .-++.. ...+++.+++.|+|+|..+...++..
T Consensus 227 G~~~~~~~~~~~~~~~~~~~--~~~---~sSM~qD-~~~gR~---tEid~i---~G~vvr~a~~~Gv~~P~~~~l~~~v~ 294 (305)
T PRK05708 227 GQPAAAANLHEEVQRVIQAT--AAN---YSSMYQD-VRAGRR---TEISYL---LGYACRAADRHGLPLPRLQHLQQRLV 294 (305)
T ss_pred CCCccHHHHHHHHHHHHHhc--cCC---CcHHHHH-HHcCCc---eeehhh---hhHHHHHHHHcCCCCchHHHHHHHHH
Confidence 9763 22333322110000 000 0111110 001100 001111 45678999999999999999987665
Q ss_pred HHHH-CCC
Q 024066 248 KLCE-NGH 254 (273)
Q Consensus 248 ~a~~-~G~ 254 (273)
..+. .|.
T Consensus 295 ~~~~~~~~ 302 (305)
T PRK05708 295 AHLRARGL 302 (305)
T ss_pred HHHHhcCC
Confidence 5443 444
No 120
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=90.26 E-value=3.4 Score=41.53 Aligned_cols=144 Identities=15% Similarity=0.170 Sum_probs=87.0
Q ss_pred CCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEE--EcCCCCHHHHHHHHHHHhhchhhhccCCC
Q 024066 8 PTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLI--DSSTIDPQTSRNISAAVSNCILKEKKDSW 85 (273)
Q Consensus 8 ~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iii--d~ST~~P~~~~~l~~~~~~~g~~~~~g~~ 85 (273)
+...+. +.+++||+||=+++.+-.++.-++.. +-+.. +++ .|+ |+||.++. ++++.+.. ...-
T Consensus 382 ~~~~~~-~~~~~aDlViEav~E~l~~K~~vf~~--l~~~~--~~~-~ilasnTS~l~i~---~ia~~~~~------p~r~ 446 (714)
T TIGR02437 382 TPTLSY-AGFDNVDIVVEAVVENPKVKAAVLAE--VEQHV--RED-AILASNTSTISIS---LLAKALKR------PENF 446 (714)
T ss_pred EEeCCH-HHhcCCCEEEEcCcccHHHHHHHHHH--HHhhC--CCC-cEEEECCCCCCHH---HHHhhcCC------cccE
Confidence 334555 45789999999999999987655432 32221 233 444 44444444 44444421 1100
Q ss_pred CCceEEEecCCCCHHHHhcCceEEEeec---CHHHHHHHHHHHHHhcCCeEEeCC-cChHHHHHHHHHHHHHHHHHHHHH
Q 024066 86 ENPVMLDAPVSGGVLAAEAGTLTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSE 161 (273)
Q Consensus 86 ~g~~~ldapv~G~~~~a~~g~l~~~vgG---~~~~~~~~~~~l~~~~~~i~~~G~-~g~a~~~Kl~~n~~~~~~~~~~~E 161 (273)
-|.||.. |+.-- .|+=++.| ++++++++..+++.+++..+.+.+ +| .+.|=+.. ..+.|
T Consensus 447 ig~Hff~-P~~~~-------~lvEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~pG------fi~NRl~~---~~~~e 509 (714)
T TIGR02437 447 CGMHFFN-PVHRM-------PLVEVIRGEKSSDETIATVVAYASKMGKTPIVVNDCPG------FFVNRVLF---PYFGG 509 (714)
T ss_pred EEEecCC-CcccC-------ceEeecCCCCCCHHHHHHHHHHHHHcCCEEEEeCCccc------chHHHHHH---HHHHH
Confidence 1234432 22111 33334444 468999999999999999888887 66 45566544 45789
Q ss_pred HHHHHHHcCCCHHHHHHHHhhcC
Q 024066 162 ALTLGQSLGISASTLTKILNSSS 184 (273)
Q Consensus 162 a~~la~~~Gl~~~~~~~~l~~~~ 184 (273)
++.+.+. |.+++++=.++..+.
T Consensus 510 a~~l~~e-G~~~~~ID~a~~~~~ 531 (714)
T TIGR02437 510 FSKLLRD-GADFVRIDKVMEKQF 531 (714)
T ss_pred HHHHHHC-CCCHHHHHHHHHhcC
Confidence 9988875 589988755665543
No 121
>PLN02928 oxidoreductase family protein
Probab=90.08 E-value=0.46 Score=43.35 Aligned_cols=62 Identities=18% Similarity=0.218 Sum_probs=50.5
Q ss_pred CCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 10 KETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 10 ~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
..+..|++++||+|++++|..+..+.++.. ..++.+ ++|.++||++-..-=.-..|.+.+.+
T Consensus 217 ~~~L~ell~~aDiVvl~lPlt~~T~~li~~--~~l~~M--k~ga~lINvaRG~lVde~AL~~AL~~ 278 (347)
T PLN02928 217 HEDIYEFAGEADIVVLCCTLTKETAGIVND--EFLSSM--KKGALLVNIARGGLLDYDAVLAALES 278 (347)
T ss_pred ccCHHHHHhhCCEEEECCCCChHhhcccCH--HHHhcC--CCCeEEEECCCccccCHHHHHHHHHc
Confidence 468899999999999999999888877743 456655 56789999998877777788888865
No 122
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=89.91 E-value=0.78 Score=40.31 Aligned_cols=60 Identities=15% Similarity=0.104 Sum_probs=44.1
Q ss_pred CCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 024066 8 PTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 76 (273)
Q Consensus 8 ~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~ 76 (273)
..++++.++..++|+|++|.|++.. .++.. .+++ .|+-++.+|+.++...+++.+.++++
T Consensus 56 ~~~~~~eell~~~D~Vvi~tp~~~h-~e~~~---~aL~-----aGk~Vi~~s~gal~~~~~L~~~A~~~ 115 (271)
T PRK13302 56 PPVVPLDQLATHADIVVEAAPASVL-RAIVE---PVLA-----AGKKAIVLSVGALLRNEDLIDLARQN 115 (271)
T ss_pred cccCCHHHHhcCCCEEEECCCcHHH-HHHHH---HHHH-----cCCcEEEecchhHHhHHHHHHHHHHc
Confidence 5678999999999999999998754 55543 2443 34555667888787888888887764
No 123
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=89.89 E-value=2.2 Score=43.02 Aligned_cols=140 Identities=18% Similarity=0.137 Sum_probs=84.8
Q ss_pred CCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEE--EcCCCCHHHHHHHHHHHhhchhhhccCCC
Q 024066 8 PTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLI--DSSTIDPQTSRNISAAVSNCILKEKKDSW 85 (273)
Q Consensus 8 ~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iii--d~ST~~P~~~~~l~~~~~~~g~~~~~g~~ 85 (273)
+...+.. .+++||+||=+++.+-+++.-++.. +-+.. +++ .|+ |+||.++. ++++.+.. ....
T Consensus 404 ~~~~~~~-~~~~aDlViEAv~E~l~~K~~vf~~--l~~~~--~~~-~ilasNTSsl~i~---~la~~~~~------p~r~ 468 (737)
T TIGR02441 404 TPTLDYS-GFKNADMVIEAVFEDLSLKHKVIKE--VEAVV--PPH-CIIASNTSALPIK---DIAAVSSR------PEKV 468 (737)
T ss_pred EEeCCHH-HhccCCeehhhccccHHHHHHHHHH--HHhhC--CCC-cEEEEcCCCCCHH---HHHhhcCC------ccce
Confidence 3445664 5789999999999999987655432 22221 233 344 56666665 44444421 1100
Q ss_pred CCceEEEecCCCCHHHHhcCceEEEeec---CHHHHHHHHHHHHHhcCCeEEeCC-cChHHHHHHHHHHHHHHHHHHHHH
Q 024066 86 ENPVMLDAPVSGGVLAAEAGTLTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSE 161 (273)
Q Consensus 86 ~g~~~ldapv~G~~~~a~~g~l~~~vgG---~~~~~~~~~~~l~~~~~~i~~~G~-~g~a~~~Kl~~n~~~~~~~~~~~E 161 (273)
-|.||.. |+.-- .|+=++-| ++++++.+..+++.+++..+.+++ +| .+.|=+. ...+.|
T Consensus 469 ig~Hff~-P~~~m-------~LvEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~pG------Fi~NRi~---~~~~~e 531 (737)
T TIGR02441 469 IGMHYFS-PVDKM-------QLLEIITHDGTSKDTLASAVAVGLKQGKVVIVVKDGPG------FYTTRCL---GPMLAE 531 (737)
T ss_pred EEEeccC-CcccC-------ceEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEECCcCC------chHHHHH---HHHHHH
Confidence 1234432 22111 33333333 568999999999999999888887 66 3445544 467788
Q ss_pred HHHHHHHcCCCHHHHHHHH
Q 024066 162 ALTLGQSLGISASTLTKIL 180 (273)
Q Consensus 162 a~~la~~~Gl~~~~~~~~l 180 (273)
++.+.+. |++++++=.++
T Consensus 532 a~~lv~e-Gv~~~~ID~a~ 549 (737)
T TIGR02441 532 VIRLLQE-GVDPKKLDKLT 549 (737)
T ss_pred HHHHHHc-CCCHHHHHHHH
Confidence 8888755 78887764443
No 124
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=89.72 E-value=0.49 Score=42.73 Aligned_cols=65 Identities=12% Similarity=0.131 Sum_probs=52.7
Q ss_pred CCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 6 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 6 Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
|++. .|..|++++||+|++++|-.++.+.++.. ..++.+ ++|.++||++=...=.-..+.+.+.+
T Consensus 188 ~~~~-~~l~ell~~sDvv~lh~plt~~T~~li~~--~~l~~m--k~ga~lIN~aRG~vVde~AL~~AL~~ 252 (323)
T PRK15409 188 NARY-CDLDTLLQESDFVCIILPLTDETHHLFGA--EQFAKM--KSSAIFINAGRGPVVDENALIAALQK 252 (323)
T ss_pred CcEe-cCHHHHHHhCCEEEEeCCCChHHhhccCH--HHHhcC--CCCeEEEECCCccccCHHHHHHHHHc
Confidence 4443 48999999999999999999998887743 356655 46789999999888888889888875
No 125
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=89.09 E-value=0.49 Score=43.71 Aligned_cols=63 Identities=14% Similarity=0.102 Sum_probs=49.4
Q ss_pred CCCCHHHHHhcCCEEEEeCCChH----HHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 9 TKETPFEVAEASDVVITMLPSSS----HVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 9 ~~~s~~e~~~~advvi~~v~~~~----av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
...++.|++++||+|++++|-.. ..+.++.. ..++.+ ++|.++||+|....-....+.+.+.+
T Consensus 157 ~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~--~~l~~m--k~gailIN~aRG~vVde~AL~~aL~~ 223 (381)
T PRK00257 157 DFVSLERILEECDVISLHTPLTKEGEHPTRHLLDE--AFLASL--RPGAWLINASRGAVVDNQALREALLS 223 (381)
T ss_pred cccCHHHHHhhCCEEEEeCcCCCCccccccccCCH--HHHhcC--CCCeEEEECCCCcccCHHHHHHHHHh
Confidence 45689999999999999999765 34444422 355554 56789999999999999999998875
No 126
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=89.08 E-value=14 Score=33.17 Aligned_cols=143 Identities=11% Similarity=0.129 Sum_probs=89.1
Q ss_pred CCCHHHHHhcCCEEEEeCCChHHHHHHHcC-CCCcccCCCCCCCeEEE--EcCCCCHHHHHHHHHHHhhchhhhccCCCC
Q 024066 10 KETPFEVAEASDVVITMLPSSSHVLDVYNG-PNGLLQGGNSVRPQLLI--DSSTIDPQTSRNISAAVSNCILKEKKDSWE 86 (273)
Q Consensus 10 ~~s~~e~~~~advvi~~v~~~~av~~v~~~-~~g~l~~~~~~~g~iii--d~ST~~P~~~~~l~~~~~~~g~~~~~g~~~ 86 (273)
..++. ++++||+||-.++-.-.++.-++. .+.++ ++ ..|+ |+||.++. ++++.+.. .
T Consensus 74 ~~~~~-~l~~~DlVIEAv~E~levK~~vf~~l~~~~-----~~-~aIlASNTSsl~it---~ia~~~~r------p---- 133 (307)
T COG1250 74 TTDLA-ALKDADLVIEAVVEDLELKKQVFAELEALA-----KP-DAILASNTSSLSIT---ELAEALKR------P---- 133 (307)
T ss_pred cCchh-HhccCCEEEEeccccHHHHHHHHHHHHhhc-----CC-CcEEeeccCCCCHH---HHHHHhCC------c----
Confidence 33444 688999999999999988754443 22222 23 3555 45555555 44444421 1
Q ss_pred CceEEEecCCCCHHHHhcCceEEEeecC---HHHHHHHHHHHHHhcCCeEEeCC-cChHHHHHHHHHHHHHHHHHHHHHH
Q 024066 87 NPVMLDAPVSGGVLAAEAGTLTFMVGGS---EDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEA 162 (273)
Q Consensus 87 g~~~ldapv~G~~~~a~~g~l~~~vgG~---~~~~~~~~~~l~~~~~~i~~~G~-~g~a~~~Kl~~n~~~~~~~~~~~Ea 162 (273)
-+|+-.=-+..|+- -.|+=++.|. +++++++..+.+.+++..+.+.+ +| .+.|-+. ...+.|+
T Consensus 134 -er~iG~HFfNP~~~---m~LVEvI~g~~T~~e~~~~~~~~~~~igK~~vv~~D~pG------Fi~NRil---~~~~~eA 200 (307)
T COG1250 134 -ERFIGLHFFNPVPL---MPLVEVIRGEKTSDETVERVVEFAKKIGKTPVVVKDVPG------FIVNRLL---AALLNEA 200 (307)
T ss_pred -hhEEEEeccCCCCc---ceeEEEecCCCCCHHHHHHHHHHHHHcCCCCEeecCCCc------eehHhHH---HHHHHHH
Confidence 12332222222221 2445556664 68999999999999987655566 66 2445433 4678899
Q ss_pred HHHHHHcCCCHHHHHHHHhhcCC
Q 024066 163 LTLGQSLGISASTLTKILNSSSA 185 (273)
Q Consensus 163 ~~la~~~Gl~~~~~~~~l~~~~~ 185 (273)
+.+.++...+++++=.++..+.|
T Consensus 201 ~~l~~eGva~~e~ID~~~~~~~G 223 (307)
T COG1250 201 IRLLEEGVATPEEIDAAMRQGLG 223 (307)
T ss_pred HHHHHhCCCCHHHHHHHHHhccC
Confidence 99999988999988777766543
No 127
>PF10728 DUF2520: Domain of unknown function (DUF2520); InterPro: IPR018931 This presumed domain is found C-terminal to a Rossmann-like domain suggesting that these proteins are oxidoreductases. ; PDB: 3D1L_A 2I76_A 3DFU_A.
Probab=88.86 E-value=7.5 Score=30.25 Aligned_cols=71 Identities=20% Similarity=0.249 Sum_probs=46.5
Q ss_pred EEEeecCHHHHHHHHHHHHHhcCCeEEeCCcChHH---HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH----HHHHH
Q 024066 108 TFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGA---AAKICNNLTMAVSMLGVSEALTLGQSLGISAST----LTKIL 180 (273)
Q Consensus 108 ~~~vgG~~~~~~~~~~~l~~~~~~i~~~G~~g~a~---~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gl~~~~----~~~~l 180 (273)
++.+-|+++..+.++.+++.+|.+++.+.+-.... +.=+++|++ ...+..+..+.++.|++.+. +..++
T Consensus 3 ~~~iEgd~~~~~~l~~l~~~lg~~~~~i~~~~r~~yHaAav~asNf~----~~L~~~a~~ll~~~gi~~~~a~~~L~PLi 78 (132)
T PF10728_consen 3 PFAIEGDEEALEVLQELAKELGGRPFEIDSEQRALYHAAAVFASNFL----VALYALAAELLEQAGIDFEEALEALLPLI 78 (132)
T ss_dssp -EEEEESHHHHHHHHHHHHHTTSEEEE--GGGHHHHHHHHHHHHHHH----HHHHHHHHHHHHHTT-SHHH--HHHHHHH
T ss_pred EEEEecCHHHHHHHHHHHHHhCCceEEeCHHhHHHHHHHHHHHHhhH----HHHHHHHHHHHHHcCCCchhHHHHHHHHH
Confidence 45666799999999999999999988885433221 112234443 45566788999999999944 55555
Q ss_pred hh
Q 024066 181 NS 182 (273)
Q Consensus 181 ~~ 182 (273)
..
T Consensus 79 ~~ 80 (132)
T PF10728_consen 79 RE 80 (132)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 128
>PRK06444 prephenate dehydrogenase; Provisional
Probab=88.85 E-value=5.9 Score=33.09 Aligned_cols=89 Identities=10% Similarity=0.202 Sum_probs=52.9
Q ss_pred HhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEE-ecC
Q 024066 17 AEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APV 95 (273)
Q Consensus 17 ~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~~g~~~ld-apv 95 (273)
+.+||+||+|+|-. ...+++.. + . .+++|.+++--.-. +.. ..|+- =|+
T Consensus 29 ~~~~DlVilavPv~-~~~~~i~~---~-------~-~~v~Dv~SvK~~i~----~~~--------------~~~vg~HPM 78 (197)
T PRK06444 29 IKKADHAFLSVPID-AALNYIES---Y-------D-NNFVEISSVKWPFK----KYS--------------GKIVSIHPL 78 (197)
T ss_pred ECCCCEEEEeCCHH-HHHHHHHH---h-------C-CeEEeccccCHHHH----Hhc--------------CCEEecCCC
Confidence 57899999999976 44556532 1 1 37889998877432 210 23444 578
Q ss_pred CCCHHHHhcC--ceEEEee--cCHHHHHHHHHHHHHhcCCeEEeCCc
Q 024066 96 SGGVLAAEAG--TLTFMVG--GSEDAYQAAKPLFLSMGKNTIYCGGA 138 (273)
Q Consensus 96 ~G~~~~a~~g--~l~~~vg--G~~~~~~~~~~~l~~~~~~i~~~G~~ 138 (273)
.| |..+..+ ...+++. .+++.++.++.+++ |.+++.+.+-
T Consensus 79 fG-p~~a~~~lf~~~iv~~~~~~~~~~~~~~~l~~--G~~~~~~t~e 122 (197)
T PRK06444 79 FG-PMSYNDGVHRTVIFINDISRDNYLNEINEMFR--GYHFVEMTAD 122 (197)
T ss_pred CC-CCcCcccccceEEEECCCCCHHHHHHHHHHHc--CCEEEEeCHH
Confidence 87 3333322 2233342 23456777888887 6677776543
No 129
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=88.46 E-value=0.24 Score=40.56 Aligned_cols=62 Identities=15% Similarity=0.133 Sum_probs=46.4
Q ss_pred CCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 10 KETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 10 ~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
..+..|++++||+|++++|-.++.+.++.. ..++.+ ++|.++||.+-...=.-..+.+.+.+
T Consensus 82 ~~~l~ell~~aDiv~~~~plt~~T~~li~~--~~l~~m--k~ga~lvN~aRG~~vde~aL~~aL~~ 143 (178)
T PF02826_consen 82 YVSLDELLAQADIVSLHLPLTPETRGLINA--EFLAKM--KPGAVLVNVARGELVDEDALLDALES 143 (178)
T ss_dssp ESSHHHHHHH-SEEEE-SSSSTTTTTSBSH--HHHHTS--TTTEEEEESSSGGGB-HHHHHHHHHT
T ss_pred eeehhhhcchhhhhhhhhccccccceeeee--eeeecc--ccceEEEeccchhhhhhhHHHHHHhh
Confidence 469999999999999999987777665532 345554 56789999998888777788888876
No 130
>PF00393 6PGD: 6-phosphogluconate dehydrogenase, C-terminal domain; InterPro: IPR006114 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequences are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This entry represents the C-terminal all-alpha domain of 6-phosphogluconate dehydrogenase. The domain contains two structural repeats of 5 helices each. The NAD-binding domain is described in IPR006115 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 2ZYD_A 2ZYA_A 3FWN_A 2JKV_E 2ZYG_B 4E21_A 1PGJ_A 1PGP_A 1PGN_A 2PGD_A ....
Probab=88.23 E-value=1.5 Score=38.88 Aligned_cols=113 Identities=17% Similarity=0.217 Sum_probs=71.2
Q ss_pred CcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHhhcC-CcccccccCCCCCCcccCCCCCCC-
Q 024066 137 GAGNGAAAKICNNLTMAVSMLGVSEALTLGQS------LGISASTLTKILNSSS-ARCWSSDSYNPVPGVMEGVPASRN- 208 (273)
Q Consensus 137 ~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~------~Gl~~~~~~~~l~~~~-~~s~~~~~~~~~~~~~~~~~~~~~- 208 (273)
.......++-+.+.+..+.+...++++.+-++ .+++..++..+.+.+. -+|++++.... .+.+...-.+
T Consensus 135 ~~~~~~~i~~l~~Aly~~~i~~yaQGf~ll~~as~~~~W~lnl~~ia~IWr~GCIIRs~lL~~i~~---af~~~p~l~nL 211 (291)
T PF00393_consen 135 KEDKEEFIEDLRKALYAAKIISYAQGFALLRAASKEYGWDLNLSEIARIWRGGCIIRSWLLDDIAE---AFKENPDLENL 211 (291)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----HHHHHHHTSSSSTT-BTHHHHHHH---HHHH-TT-STG
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCcHHHHHHHHhccchHHHHHHHHHHH---HHHhCCChhcc
Confidence 36678899999999999999999999988764 5788889999988765 44444322110 0000000001
Q ss_pred -CCCCcc--hhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHC
Q 024066 209 -YGGGFA--SKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCEN 252 (273)
Q Consensus 209 -~~~~f~--~~~~~KD~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~ 252 (273)
+++.|. +.....+++.++..+-+.|+|+|.+.++++.|+.-...
T Consensus 212 ll~~~f~~~l~~~~~~lR~vV~~ai~~gipvPalsaaL~Y~ds~~~~ 258 (291)
T PF00393_consen 212 LLDPYFAEELKDNQPSLRRVVSLAIEAGIPVPALSAALSYFDSYRSE 258 (291)
T ss_dssp GGSHHHHHHHHHHHHHHHHHHHHHHHHT---HHHHHHHHHHHHHTTS
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhcccC
Confidence 122232 44556778999999999999999999999888765444
No 131
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=87.84 E-value=0.71 Score=41.69 Aligned_cols=67 Identities=18% Similarity=0.168 Sum_probs=55.4
Q ss_pred CCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 5 MGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 5 ~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
.|....++..++.++||+|.+++|-.+..+.++.. ..++.| ++|.++||++=...-.-..|.+.+.+
T Consensus 183 ~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~--~~~a~M--K~gailIN~aRG~vVde~aL~~AL~~ 249 (324)
T COG0111 183 DGVVGVDSLDELLAEADILTLHLPLTPETRGLINA--EELAKM--KPGAILINAARGGVVDEDALLAALDS 249 (324)
T ss_pred ccceecccHHHHHhhCCEEEEcCCCCcchhcccCH--HHHhhC--CCCeEEEECCCcceecHHHHHHHHHc
Confidence 45677789999999999999999999998887754 344444 56789999999998888889988875
No 132
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=87.78 E-value=3 Score=39.97 Aligned_cols=109 Identities=12% Similarity=0.114 Sum_probs=75.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHhhcC-CcccccccCCCCCCcccCCCCCCC--CC
Q 024066 140 NGAAAKICNNLTMAVSMLGVSEALTLGQS------LGISASTLTKILNSSS-ARCWSSDSYNPVPGVMEGVPASRN--YG 210 (273)
Q Consensus 140 ~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~------~Gl~~~~~~~~l~~~~-~~s~~~~~~~~~~~~~~~~~~~~~--~~ 210 (273)
....+.-+.+.+..+.+..++|.+.+-++ .++|..++..+++.++ -+||+++...+ .+.+...-.+ ++
T Consensus 326 ~~~~~~~l~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr~GcIIrs~lL~~i~~---a~~~~~~l~~l~~~ 402 (493)
T PLN02350 326 KKQLIDDVRQALYASKICSYAQGMNLIRAKSVEKGWNLNLGELARIWKGGCIIRAVFLDRIKK---AYDRNPDLASLLVD 402 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCceeeHhHHHHHHH---HHHcCCChhhhcCC
Confidence 35667788999999999999999999883 4789999999999875 56666543221 1110000001 11
Q ss_pred CCcc--hhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 024066 211 GGFA--SKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCE 251 (273)
Q Consensus 211 ~~f~--~~~~~KD~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~ 251 (273)
+.|. +.......+.++..+-+.|+|+|.+.+++..|+.-..
T Consensus 403 ~~~~~~~~~~~~~~r~~V~~a~~~gip~P~ls~aL~y~~s~~~ 445 (493)
T PLN02350 403 PEFAKEMVERQAAWRRVVSLAINAGISTPGMSASLAYFDTYRR 445 (493)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcc
Confidence 2222 3344667889999999999999999999996665443
No 133
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=87.47 E-value=1.5 Score=38.31 Aligned_cols=62 Identities=18% Similarity=0.098 Sum_probs=43.4
Q ss_pred CCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCC---CCHHHHHHHHHHHhhc
Q 024066 6 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSST---IDPQTSRNISAAVSNC 76 (273)
Q Consensus 6 Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST---~~P~~~~~l~~~~~~~ 76 (273)
|....++..|++.++|+|+.|.++. ...++... +++ .|+-++.+|+ .+++..+++.+.++++
T Consensus 48 ~~~~~~~~~ell~~~DvVvi~a~~~-~~~~~~~~---al~-----~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~ 112 (265)
T PRK13304 48 GAKACLSIDELVEDVDLVVECASVN-AVEEVVPK---SLE-----NGKDVIIMSVGALADKELFLKLYKLAKEN 112 (265)
T ss_pred CCeeECCHHHHhcCCCEEEEcCChH-HHHHHHHH---HHH-----cCCCEEEEchHHhcCHHHHHHHHHHHHHc
Confidence 5667789999889999999998754 55555532 433 2344555676 4788888888877653
No 134
>PRK06932 glycerate dehydrogenase; Provisional
Probab=86.76 E-value=0.87 Score=40.91 Aligned_cols=62 Identities=18% Similarity=0.128 Sum_probs=50.6
Q ss_pred CCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 10 KETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 10 ~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
..+..|++++||+|++++|-.+..+..+.. ..++.+ ++|.++||++=...=.-..+.+.+.+
T Consensus 188 ~~~l~ell~~sDiv~l~~Plt~~T~~li~~--~~l~~m--k~ga~lIN~aRG~~Vde~AL~~aL~~ 249 (314)
T PRK06932 188 YTPFEEVLKQADIVTLHCPLTETTQNLINA--ETLALM--KPTAFLINTGRGPLVDEQALLDALEN 249 (314)
T ss_pred cCCHHHHHHhCCEEEEcCCCChHHhcccCH--HHHHhC--CCCeEEEECCCccccCHHHHHHHHHc
Confidence 357899999999999999988888877653 355554 56789999998888778888888875
No 135
>COG4408 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.69 E-value=13 Score=33.54 Aligned_cols=208 Identities=18% Similarity=0.222 Sum_probs=123.6
Q ss_pred cCCEEEEeCCChHHHHHHHcC--CCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEEecCC
Q 024066 19 ASDVVITMLPSSSHVLDVYNG--PNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVS 96 (273)
Q Consensus 19 ~advvi~~v~~~~av~~v~~~--~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~~g~~~ldapv~ 96 (273)
++|+-+++++++-+-..++.. +.-++.. .-+.++++-.+-.+-...+.+.+.++.+ -+|.-+.
T Consensus 137 ~~daeViS~SsY~~dTk~id~~~p~~alTk--avKkriYlgs~~~ns~~~e~l~~v~aq~-------------~I~v~~~ 201 (431)
T COG4408 137 GRDAEVISLSSYYADTKYIDAEQPNRALTK--AVKKRIYLGSQHGNSGSAEMLTAVLAQH-------------GIDVEPC 201 (431)
T ss_pred CCCceEEEeehhcccceeecccCcchHHHH--HHhHheeeccCCCCChHHHHHHHHHHhc-------------CCceEEc
Confidence 467777777665443333322 1112211 1234688877777777777788777653 2666677
Q ss_pred CCHHHHhcCceEEEeecCHH--HHHHHHHHHHHhcCCe-EE----eCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 024066 97 GGVLAAEAGTLTFMVGGSED--AYQAAKPLFLSMGKNT-IY----CGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSL 169 (273)
Q Consensus 97 G~~~~a~~g~l~~~vgG~~~--~~~~~~~~l~~~~~~i-~~----~G~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~ 169 (273)
-+|-.|+....+.+|--+-- .| ..+.+|...+... +| -|++- .-++.|+ .....|.+.+..+.
T Consensus 202 esp~~AEtrnit~YVHpPlflndf-sL~aif~~~~~p~yvYKlyPEGPIt----~~lIr~m-----r~lwke~m~ll~r~ 271 (431)
T COG4408 202 ESPLAAETRNITLYVHPPLFLNDF-SLQAIFYPEQRPQYVYKLYPEGPIT----PALIRDM-----RGLWKEYMRLLNRL 271 (431)
T ss_pred CChhhhhhcccceeecCcchhhhh-HHHHHhCCcCCCceeEecCCCCCCC----HHHHHHH-----HHHHHHHHHHHHHc
Confidence 88999998888888877642 22 2456777766542 22 24433 2334443 67789999999999
Q ss_pred CCCHHHHHHHHhhcCC--------cccccccCCCCCCcccCC--------CC---------CCCC-C--C-Cc-------
Q 024066 170 GISASTLTKILNSSSA--------RCWSSDSYNPVPGVMEGV--------PA---------SRNY-G--G-GF------- 213 (273)
Q Consensus 170 Gl~~~~~~~~l~~~~~--------~s~~~~~~~~~~~~~~~~--------~~---------~~~~-~--~-~f------- 213 (273)
|+..-.++..++..-- ..|+ +.+..++.+..+. ++ .|.| + . .|
T Consensus 272 ~ve~iNLLrFl~ddNYPV~~e~l~r~dI-d~F~~~~~i~QeYlLfVRYtalLvDPfS~pDEqG~yfDFSAVpfr~Vy~de 350 (431)
T COG4408 272 GVEEINLLRFLNDDNYPVRAEMLSRRDI-DEFPQLPPIEQEYLLFVRYTALLVDPFSTPDEQGRYFDFSAVPFRTVYQDE 350 (431)
T ss_pred CCCchhHHHHhccCCCCcChhhcCccch-hhcccCChHHHHHHHHHHHHHHhcCCCCCccccCccccccccceeeeeecc
Confidence 9999888888876421 0011 1111111111100 00 1111 1 0 11
Q ss_pred ----chhhH-HHH---HHHHHHHHHHhCCCChHHHHHHHHHHHHHHC
Q 024066 214 ----ASKLM-AKD---LNLALASAKEVGVDCPLTSQAQDIYAKLCEN 252 (273)
Q Consensus 214 ----~~~~~-~KD---~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~ 252 (273)
.+..+ ..| ++.+...|...++++|.++.....|+.++.+
T Consensus 351 ~gl~~lPRvP~EDy~kla~iq~la~~l~v~~Pt~dq~lt~ye~a~k~ 397 (431)
T COG4408 351 NGLWHLPRVPLEDYYKLATIQLLAGALDVVMPTADQLLTRYEQALKA 397 (431)
T ss_pred cccccCCCCcHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHH
Confidence 22222 223 6778899999999999999999999999874
No 136
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=86.24 E-value=10 Score=35.12 Aligned_cols=177 Identities=18% Similarity=0.269 Sum_probs=111.1
Q ss_pred CCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEEecCCCCHHHHhcCceEEEeecCHH--HHHHHHHHHHHh
Q 024066 51 RPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSED--AYQAAKPLFLSM 128 (273)
Q Consensus 51 ~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~--~~~~~~~~l~~~ 128 (273)
+.+++|-+|...-....++.+.+++.| ++.-++.+|-.|+....+++|--+=- .| ..+.+|..-
T Consensus 167 K~kiYigSt~~~s~~~~~l~~~~~~~g-------------I~~~~~~~pl~AE~rNislYVHpplfmndf-sL~aIF~~~ 232 (429)
T PF10100_consen 167 KKKIYIGSTHSNSPELDKLCRLLAQLG-------------IQLEVMDNPLEAESRNISLYVHPPLFMNDF-SLNAIFEED 232 (429)
T ss_pred hceEEEEeCCCCChHHHHHHHHHHHcC-------------CeEEEeCChHhhhhcccceecCChHhhChh-hHHHHhCCC
Confidence 558999888888888888999887642 55566777788888888888875521 11 245566655
Q ss_pred cCC-eEE----eCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCC--------cccccccCCC
Q 024066 129 GKN-TIY----CGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSA--------RCWSSDSYNP 195 (273)
Q Consensus 129 ~~~-i~~----~G~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gl~~~~~~~~l~~~~~--------~s~~~~~~~~ 195 (273)
+.+ .+| =||+- ..+++++ ....-|.+.+-.+.|++.=-++..++...- ..++ +.+..
T Consensus 233 ~~~kYvYKL~PEGPIT----~~~I~~M-----~~lw~Ei~~i~~~l~~~~~NLLkFm~ddNYPV~~eslsr~~I-e~F~~ 302 (429)
T PF10100_consen 233 GVPKYVYKLFPEGPIT----PTLIRDM-----VQLWKEIMEILNKLGIEPFNLLKFMNDDNYPVRPESLSRDDI-ESFEE 302 (429)
T ss_pred CCcceEEecCCCCCCC----HHHHHHH-----HHHHHHHHHHHHHcCCCcchHHHHhccCCCCCChhhCCHHHH-hhhhc
Confidence 443 122 24443 3344443 567889999999999999889998887311 0000 11111
Q ss_pred CCCcccCC--------CC---------CCCC-C--------------CCcchhhHHHH----HHHHHHHHHHhCCCChHH
Q 024066 196 VPGVMEGV--------PA---------SRNY-G--------------GGFASKLMAKD----LNLALASAKEVGVDCPLT 239 (273)
Q Consensus 196 ~~~~~~~~--------~~---------~~~~-~--------------~~f~~~~~~KD----~~~~~~~a~~~g~~~~~~ 239 (273)
++.+-.+. ++ +|.| + +-+.+..+.|+ +.++...|+..|+++|++
T Consensus 303 l~~i~QEYLLYVRYtsiLIDPFS~PD~~GrYFDFSAVp~~~i~~d~~g~w~iPRmP~EDy~r~~~i~~la~~l~v~~Pti 382 (429)
T PF10100_consen 303 LPAIHQEYLLYVRYTSILIDPFSEPDEQGRYFDFSAVPYKKIFKDEEGLWDIPRMPKEDYYRLKIIQGLARALNVSCPTI 382 (429)
T ss_pred CChHHhhHHHHHHhhhheeCCCCCCCCCCCcccccccceeeeeecCCCcccCCCCCHHHHHHHHHHHHHHHHhCCCCcHH
Confidence 11110000 00 1211 1 01234444333 778999999999999999
Q ss_pred HHHHHHHHHHHH
Q 024066 240 SQAQDIYAKLCE 251 (273)
Q Consensus 240 ~~~~~~~~~a~~ 251 (273)
+...+.|+....
T Consensus 383 d~~l~~Ye~~l~ 394 (429)
T PF10100_consen 383 DRFLARYESKLS 394 (429)
T ss_pred HHHHHHHHHHHH
Confidence 999999998866
No 137
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=85.85 E-value=1.3 Score=40.10 Aligned_cols=65 Identities=14% Similarity=0.134 Sum_probs=54.7
Q ss_pred CCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 6 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 6 Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
+++..+ +.|++++||+|.+.+|-.++.+.++.. ..++.| +++.++||++=...-..+.+.+.+++
T Consensus 188 ~~~y~~-l~ell~~sDii~l~~Plt~~T~hLin~--~~l~~m--k~ga~lVNtaRG~~VDe~ALi~AL~~ 252 (324)
T COG1052 188 GARYVD-LDELLAESDIISLHCPLTPETRHLINA--EELAKM--KPGAILVNTARGGLVDEQALIDALKS 252 (324)
T ss_pred Cceecc-HHHHHHhCCEEEEeCCCChHHhhhcCH--HHHHhC--CCCeEEEECCCccccCHHHHHHHHHh
Confidence 356666 999999999999999999999888754 356665 56789999999999999999999976
No 138
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=85.42 E-value=0.91 Score=40.73 Aligned_cols=62 Identities=13% Similarity=0.119 Sum_probs=50.7
Q ss_pred CCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 10 KETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 10 ~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
..+..|++++||+|++++|-.+..+.++.. ..++.+ +++.++||++=...=.-..+.+.+.+
T Consensus 187 ~~~l~ell~~sDvv~lh~Plt~~T~~li~~--~~~~~M--k~~a~lIN~aRG~vVDe~AL~~AL~~ 248 (311)
T PRK08410 187 RVSLEELLKTSDIISIHAPLNEKTKNLIAY--KELKLL--KDGAILINVGRGGIVNEKDLAKALDE 248 (311)
T ss_pred eecHHHHhhcCCEEEEeCCCCchhhcccCH--HHHHhC--CCCeEEEECCCccccCHHHHHHHHHc
Confidence 347899999999999999999888877653 355554 56789999999888888889888875
No 139
>PLN02306 hydroxypyruvate reductase
Probab=85.08 E-value=1.5 Score=40.56 Aligned_cols=62 Identities=13% Similarity=0.037 Sum_probs=50.1
Q ss_pred CCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 10 KETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 10 ~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
..+..|++++||+|++++|-.+..+..+.. ..++.| ++|.++||++=..-=.-..+.+.+.+
T Consensus 227 ~~~L~ell~~sDiV~lh~Plt~~T~~lin~--~~l~~M--K~ga~lIN~aRG~lVDe~AL~~AL~s 288 (386)
T PLN02306 227 ASSMEEVLREADVISLHPVLDKTTYHLINK--ERLALM--KKEAVLVNASRGPVIDEVALVEHLKA 288 (386)
T ss_pred cCCHHHHHhhCCEEEEeCCCChhhhhhcCH--HHHHhC--CCCeEEEECCCccccCHHHHHHHHHh
Confidence 468999999999999999988888877754 355555 56789999998877777788888865
No 140
>PRK06487 glycerate dehydrogenase; Provisional
Probab=84.65 E-value=1.2 Score=40.07 Aligned_cols=61 Identities=15% Similarity=0.080 Sum_probs=49.8
Q ss_pred CCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 11 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 11 ~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
.+..|++++||+|++++|-.++.+..+.. ..++.+ ++|.++||++=...=.-..+.+.+.+
T Consensus 189 ~~l~ell~~sDiv~l~lPlt~~T~~li~~--~~~~~m--k~ga~lIN~aRG~vVde~AL~~AL~~ 249 (317)
T PRK06487 189 LPLDELLPQVDALTLHCPLTEHTRHLIGA--RELALM--KPGALLINTARGGLVDEQALADALRS 249 (317)
T ss_pred cCHHHHHHhCCEEEECCCCChHHhcCcCH--HHHhcC--CCCeEEEECCCccccCHHHHHHHHHc
Confidence 47899999999999999999898877653 355554 56789999998887777788888875
No 141
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=84.13 E-value=1.8 Score=39.23 Aligned_cols=62 Identities=13% Similarity=0.126 Sum_probs=52.6
Q ss_pred CCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 10 KETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 10 ~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
..+..|.+.++|+|++|+|..+..+.++.. .+++.+ .+|.++||.+=...-.-+++.+.+.+
T Consensus 208 ~~d~~~~~~~sD~ivv~~pLt~~T~~liNk--~~~~~m--k~g~vlVN~aRG~iide~~l~eaL~s 269 (336)
T KOG0069|consen 208 FVDIEELLANSDVIVVNCPLTKETRHLINK--KFIEKM--KDGAVLVNTARGAIIDEEALVEALKS 269 (336)
T ss_pred ccCHHHHHhhCCEEEEecCCCHHHHHHhhH--HHHHhc--CCCeEEEeccccccccHHHHHHHHhc
Confidence 457788999999999999999999998875 477765 46789999999998888889888875
No 142
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=83.72 E-value=1.4 Score=39.91 Aligned_cols=122 Identities=22% Similarity=0.198 Sum_probs=68.3
Q ss_pred CHHHH-HhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceE
Q 024066 12 TPFEV-AEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVM 90 (273)
Q Consensus 12 s~~e~-~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~~g~~~ 90 (273)
++.+. ..+||+||+|+|+..+.+-|-. ++. .+..|||+|+-.--.-.++=+.+-.. ++. +-.+
T Consensus 62 ~~~~~~~~~~DvvFlalPhg~s~~~v~~----l~~-----~g~~VIDLSadfR~~d~~~ye~~Yg~---~h~----~~~~ 125 (349)
T COG0002 62 DPEKIELDECDVVFLALPHGVSAELVPE----LLE-----AGCKVIDLSADFRLKDPEVYEKWYGF---THA----GPEL 125 (349)
T ss_pred ChhhhhcccCCEEEEecCchhHHHHHHH----HHh-----CCCeEEECCcccccCCHHHHHHhhCC---CCC----Cchh
Confidence 33443 4459999999999977664432 332 24469999997654333333322110 011 1345
Q ss_pred EEecCCCCHHH----HhcCceEEEeecC-HHHHHHHHHHHHH----hcCC-eEEe--CCcChHHHHHHHHH
Q 024066 91 LDAPVSGGVLA----AEAGTLTFMVGGS-EDAYQAAKPLFLS----MGKN-TIYC--GGAGNGAAAKICNN 149 (273)
Q Consensus 91 ldapv~G~~~~----a~~g~l~~~vgG~-~~~~~~~~~~l~~----~~~~-i~~~--G~~g~a~~~Kl~~n 149 (273)
++--|.|=|.. .+..++.-.-|+- ..+.-.+.|+++. .... ++.. |-.|.|...+.-+.
T Consensus 126 l~~avYGLpEl~~e~i~~A~lIAnPGCypTa~iLal~PL~~~~ll~~~~~~ivdakSG~SGaGrk~s~~~~ 196 (349)
T COG0002 126 LEDAVYGLPELHREKIRGAKLIANPGCYPTAAILALAPLVKAGLLDPDSPPIVDAKSGVSGAGRKASVKNH 196 (349)
T ss_pred hhcccccCcccCHHHHhcCCEeeCCCchHHHHHHHHHHHHHcCCcCCCCceEEEEeEecCcCCCCcccccc
Confidence 66666665443 3444555666664 3566678899987 3443 2322 44677766655433
No 143
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=83.27 E-value=0.97 Score=36.13 Aligned_cols=63 Identities=21% Similarity=0.259 Sum_probs=38.1
Q ss_pred CCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCC-CHHHHHHHHHHHhh
Q 024066 7 VPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI-DPQTSRNISAAVSN 75 (273)
Q Consensus 7 a~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~-~P~~~~~l~~~~~~ 75 (273)
..+.+++.++++++|+||+++|.. ..++++.. +.+.+ ..++++|.++-. .+++...+.+.+++
T Consensus 57 i~~t~dl~~a~~~ad~IiiavPs~-~~~~~~~~---l~~~l--~~~~~ii~~~KG~~~~~~~~~~~~i~~ 120 (157)
T PF01210_consen 57 IKATTDLEEALEDADIIIIAVPSQ-AHREVLEQ---LAPYL--KKGQIIISATKGFEPGTLLLLSEVIEE 120 (157)
T ss_dssp EEEESSHHHHHTT-SEEEE-S-GG-GHHHHHHH---HTTTS--HTT-EEEETS-SEETTEEEEHHHHHHH
T ss_pred cccccCHHHHhCcccEEEecccHH-HHHHHHHH---Hhhcc--CCCCEEEEecCCcccCCCccHHHHHHH
Confidence 446778999999999999999986 56788764 44432 345677766644 34454455555544
No 144
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=82.52 E-value=1.3 Score=36.28 Aligned_cols=107 Identities=19% Similarity=0.237 Sum_probs=56.2
Q ss_pred CCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEE-EEcCCCCHHHHHHHHHHHhhchhhhccCCCC
Q 024066 8 PTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLL-IDSSTIDPQTSRNISAAVSNCILKEKKDSWE 86 (273)
Q Consensus 8 ~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~ii-id~ST~~P~~~~~l~~~~~~~g~~~~~g~~~ 86 (273)
+..++..+++ +||+||=|+|.+-.++.-++. .+-+. .++..++ -++|+.++. ++++.+... ++ .-
T Consensus 68 ~~~~dl~~~~-~adlViEai~E~l~~K~~~~~--~l~~~--~~~~~ilasnTSsl~i~---~la~~~~~p---~R---~i 133 (180)
T PF02737_consen 68 SFTTDLEEAV-DADLVIEAIPEDLELKQELFA--ELDEI--CPPDTILASNTSSLSIS---ELAAALSRP---ER---FI 133 (180)
T ss_dssp EEESSGGGGC-TESEEEE-S-SSHHHHHHHHH--HHHCC--S-TTSEEEE--SSS-HH---HHHTTSSTG---GG---EE
T ss_pred ccccCHHHHh-hhheehhhccccHHHHHHHHH--HHHHH--hCCCceEEecCCCCCHH---HHHhccCcC---ce---EE
Confidence 4567888888 999999999999888765543 13322 1233333 245555544 445544211 01 01
Q ss_pred CceEEEecCCCCHHHHhcCceE-EEeec--CHHHHHHHHHHHHHhcCCeEEeC
Q 024066 87 NPVMLDAPVSGGVLAAEAGTLT-FMVGG--SEDAYQAAKPLFLSMGKNTIYCG 136 (273)
Q Consensus 87 g~~~ldapv~G~~~~a~~g~l~-~~vgG--~~~~~~~~~~~l~~~~~~i~~~G 136 (273)
|.+|.. |.-.. .+. ++.|. ++++++++..+++.+++..+.+.
T Consensus 134 g~Hf~~-P~~~~-------~lVEvv~~~~T~~~~~~~~~~~~~~~gk~pv~v~ 178 (180)
T PF02737_consen 134 GMHFFN-PPHLM-------PLVEVVPGPKTSPETVDRVRALLRSLGKTPVVVK 178 (180)
T ss_dssp EEEE-S-STTT---------EEEEEE-TTS-HHHHHHHHHHHHHTT-EEEEEE
T ss_pred EEeccc-ccccC-------ceEEEeCCCCCCHHHHHHHHHHHHHCCCEEEEec
Confidence 244442 33222 223 33333 56899999999999999877663
No 145
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=81.02 E-value=28 Score=34.70 Aligned_cols=113 Identities=10% Similarity=0.100 Sum_probs=73.5
Q ss_pred EEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEE-ecCCCCHHH
Q 024066 23 VITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSGGVLA 101 (273)
Q Consensus 23 vi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~~g~~~ld-apv~G~~~~ 101 (273)
||+|+|-. +..+++.. +.+.+ +++.+|.|.+++--.-.+++.+.+... ...|+- =|+.|+...
T Consensus 1 vila~Pv~-~~~~~~~~---~~~~~--~~~~~vtDv~SvK~~i~~~~~~~l~~~----------~~~fvg~HPMaG~e~~ 64 (673)
T PRK11861 1 VLLAAPVA-QTGPLLAR---IAPFL--DASTIVTDAGSTKSDVVAAARAALGAR----------IGQFVPGHPIAGRESS 64 (673)
T ss_pred CEEEcCHH-HHHHHHHH---HhhhC--CCCcEEEecCcccHHHHHHHHHhcccc----------CCeEEecCCcCcCcch
Confidence 68899965 55666653 44432 356899999999987777766654320 134665 578876543
Q ss_pred H--------hcCceEEEeec---CHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHH
Q 024066 102 A--------EAGTLTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLT 151 (273)
Q Consensus 102 a--------~~g~l~~~vgG---~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~ 151 (273)
- -+|...+++=. +++.++.++.+++.+|.+++.+.+-..=..+=++.-+-
T Consensus 65 G~~~a~~~Lf~~~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~~~~HD~~~A~iShlp 125 (673)
T PRK11861 65 GVDAALADLYVGRNVVLCALPENAPDALARVEAMWRAARADVRAMSAEQHDRVFAAVSHLP 125 (673)
T ss_pred hhhhhChhHhCCCeEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHHHHHHHHhhHH
Confidence 3 24555677632 56788999999999999988886644444444444433
No 146
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=80.02 E-value=0.83 Score=40.00 Aligned_cols=50 Identities=10% Similarity=0.022 Sum_probs=32.2
Q ss_pred hcCCEEEEeCCChH--HHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 18 EASDVVITMLPSSS--HVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 18 ~~advvi~~v~~~~--av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
.++|+||.|+|..- .+.++... .+. ..++.+++|+++..++| .+.+++++
T Consensus 177 ~~~DivInatp~gm~~~~~~~~~~----~~~--l~~~~~v~D~~y~p~~T--~ll~~A~~ 228 (270)
T TIGR00507 177 HRVDLIINATSAGMSGNIDEPPVP----AEK--LKEGMVVYDMVYNPGET--PFLAEAKS 228 (270)
T ss_pred cCccEEEECCCCCCCCCCCCCCCC----HHH--cCCCCEEEEeccCCCCC--HHHHHHHH
Confidence 47999999999752 22211110 111 13457999999999887 57777665
No 147
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=79.41 E-value=6.7 Score=29.16 Aligned_cols=64 Identities=20% Similarity=0.281 Sum_probs=48.1
Q ss_pred CCCCCCCCHHHHHh--cCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhhc
Q 024066 5 MGVPTKETPFEVAE--ASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNC 76 (273)
Q Consensus 5 ~Ga~~~~s~~e~~~--~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~-ST~~P~~~~~l~~~~~~~ 76 (273)
.|....+|..++.+ +.|+|++|.|+.....-+.. +++. +-.++++- -+.++++.+++.+..+++
T Consensus 46 ~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~~~~~----~l~~----g~~v~~EKP~~~~~~~~~~l~~~a~~~ 112 (120)
T PF01408_consen 46 YGIPVYTDLEELLADEDVDAVIIATPPSSHAEIAKK----ALEA----GKHVLVEKPLALTLEEAEELVEAAKEK 112 (120)
T ss_dssp TTSEEESSHHHHHHHTTESEEEEESSGGGHHHHHHH----HHHT----TSEEEEESSSSSSHHHHHHHHHHHHHH
T ss_pred hcccchhHHHHHHHhhcCCEEEEecCCcchHHHHHH----HHHc----CCEEEEEcCCcCCHHHHHHHHHHHHHh
Confidence 46678889999988 79999999999887665543 3322 33677775 356899999999988764
No 148
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=78.75 E-value=2.6 Score=33.22 Aligned_cols=40 Identities=18% Similarity=0.158 Sum_probs=29.6
Q ss_pred CHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCC
Q 024066 12 TPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 62 (273)
Q Consensus 12 s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~ 62 (273)
+..+.+++||+|++++..+.-++.= .+ ++|.++||.+...
T Consensus 64 ~l~~~v~~ADIVvsAtg~~~~i~~~------~i-----kpGa~Vidvg~~~ 103 (140)
T cd05212 64 QLQSKVHDADVVVVGSPKPEKVPTE------WI-----KPGATVINCSPTK 103 (140)
T ss_pred CHHHHHhhCCEEEEecCCCCccCHH------Hc-----CCCCEEEEcCCCc
Confidence 7889999999999999987433322 22 3568889888765
No 149
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=77.46 E-value=1.4 Score=35.66 Aligned_cols=46 Identities=22% Similarity=0.306 Sum_probs=27.5
Q ss_pred CCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEE
Q 024066 5 MGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLI 56 (273)
Q Consensus 5 ~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iii 56 (273)
.|-++ .+++|+++.+|+|++.+||..+ .+|+.. .+.+++ ..|++++
T Consensus 47 ~Gf~v-~~~~eAv~~aDvV~~L~PD~~q-~~vy~~--~I~p~l--~~G~~L~ 92 (165)
T PF07991_consen 47 DGFEV-MSVAEAVKKADVVMLLLPDEVQ-PEVYEE--EIAPNL--KPGATLV 92 (165)
T ss_dssp TT-EC-CEHHHHHHC-SEEEE-S-HHHH-HHHHHH--HHHHHS---TT-EEE
T ss_pred CCCee-ccHHHHHhhCCEEEEeCChHHH-HHHHHH--HHHhhC--CCCCEEE
Confidence 44443 5889999999999999998654 557642 366664 4555554
No 150
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=77.06 E-value=12 Score=34.82 Aligned_cols=113 Identities=15% Similarity=0.160 Sum_probs=74.8
Q ss_pred CcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH----c--CCCHHHHHHHHhhcC-CcccccccCCCCCCcccCCCCCCC-
Q 024066 137 GAGNGAAAKICNNLTMAVSMLGVSEALTLGQS----L--GISASTLTKILNSSS-ARCWSSDSYNPVPGVMEGVPASRN- 208 (273)
Q Consensus 137 ~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~----~--Gl~~~~~~~~l~~~~-~~s~~~~~~~~~~~~~~~~~~~~~- 208 (273)
+-.....+.-+.+.+..+.+.+.++.+.+.++ + +++..++..+++.+. -++-+++... ..+.+.....+
T Consensus 312 ~~dk~~fi~~vr~ALy~sKI~sYAQGF~~l~~AS~e~gW~l~~~~iA~iWR~GCIIRs~FL~~I~---~af~~~p~l~nL 388 (473)
T COG0362 312 PGDKEEFIEDVRQALYASKIVSYAQGFALLRAASKEYGWDLNLGEIALIWRGGCIIRSKFLDKIT---DAFDENPELANL 388 (473)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhccceehHHHHHHHH---HHHhcCcchhhh
Confidence 34577888899999999999999998877664 3 577777777777654 2222221110 00000000001
Q ss_pred -CCCCcc--hhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHC
Q 024066 209 -YGGGFA--SKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCEN 252 (273)
Q Consensus 209 -~~~~f~--~~~~~KD~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~ 252 (273)
++|-|. +.....++|.++..+-+.|+|+|.+..+...|+.-...
T Consensus 389 l~~pyF~~~~~~~~~~~R~vV~~a~~~giP~P~~ssalsy~Dsyr~~ 435 (473)
T COG0362 389 LLAPYFKSILEEYQQSLRRVVAYAVEAGIPVPAFSSALSYYDSYRTA 435 (473)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhhc
Confidence 123342 56678889999999999999999999999988765443
No 151
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=76.59 E-value=21 Score=32.26 Aligned_cols=108 Identities=15% Similarity=0.177 Sum_probs=58.2
Q ss_pred CCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCC---CHHHHHHHHHHHhhchhhhcc
Q 024066 6 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI---DPQTSRNISAAVSNCILKEKK 82 (273)
Q Consensus 6 Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~---~P~~~~~l~~~~~~~g~~~~~ 82 (273)
+.....+..++..+.|+|++|.|+......+.. +++ .|.-+|++... .|+..+++.+.+++
T Consensus 47 ~v~~~~d~~e~l~~iDVViIctPs~th~~~~~~----~L~-----aG~NVV~s~~~h~~~p~~~~~ld~AAk~------- 110 (324)
T TIGR01921 47 PVYAVADDEKHLDDVDVLILCMGSATDIPEQAP----YFA-----QFANTVDSFDNHRDIPRHRQVMDAAAKA------- 110 (324)
T ss_pred CccccCCHHHhccCCCEEEEcCCCccCHHHHHH----HHH-----cCCCEEECCCcccCCHHHHHHHHHHHHH-------
Confidence 344445666777788999999888766554432 332 34556666442 23444444443332
Q ss_pred CCCCCceEEEecCCCCHHHHhcCceEEEeec-CHHHHHHHHHHHHHhc---CCeEEeCC-c--ChHHHHHHHHHH
Q 024066 83 DSWENPVMLDAPVSGGVLAAEAGTLTFMVGG-SEDAYQAAKPLFLSMG---KNTIYCGG-A--GNGAAAKICNNL 150 (273)
Q Consensus 83 g~~~g~~~ldapv~G~~~~a~~g~l~~~vgG-~~~~~~~~~~~l~~~~---~~i~~~G~-~--g~a~~~Kl~~n~ 150 (273)
.|..+++..| |+..|...+-+.+.+- ....+-|+ . |..-+++-++..
T Consensus 111 ---------------------~g~vsvi~~GwDPG~~si~r~~~ea~lp~g~~yt~wG~g~s~ghs~a~~~~~Gv 164 (324)
T TIGR01921 111 ---------------------AGNVSVISTGWDPGMFSINRVYGEAVLPKGQTYTFWGPGLSQGHSDAVRRIDGV 164 (324)
T ss_pred ---------------------cCCEEEEECCCCcChHHHHHHHHhccCCCCcceeccCCCcCchhhhhhcccCCc
Confidence 1344555545 6666666666667663 33333354 3 444455555444
No 152
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=75.71 E-value=4.7 Score=35.66 Aligned_cols=41 Identities=7% Similarity=0.105 Sum_probs=31.4
Q ss_pred CCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCC
Q 024066 11 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 62 (273)
Q Consensus 11 ~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~ 62 (273)
.++++.+++||+||+++.-+.-+..=+ + ++|.++||.++..
T Consensus 191 ~~l~~~~~~ADIvI~AvG~p~~i~~~~------v-----k~GavVIDvGin~ 231 (282)
T PRK14169 191 RNLKQLTKEADILVVAVGVPHFIGADA------V-----KPGAVVIDVGISR 231 (282)
T ss_pred CCHHHHHhhCCEEEEccCCcCccCHHH------c-----CCCcEEEEeeccc
Confidence 457889999999999999986544322 1 3568999999876
No 153
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=74.63 E-value=30 Score=31.58 Aligned_cols=165 Identities=14% Similarity=0.127 Sum_probs=97.2
Q ss_pred CCCCCCCCHHHHHh-cCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccC
Q 024066 5 MGVPTKETPFEVAE-ASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKD 83 (273)
Q Consensus 5 ~Ga~~~~s~~e~~~-~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g 83 (273)
.|....+.+.++++ +.|+|+.|+.-- ..+.|+.-- +.. ..+.|++++|-.++---....+.+.+.+
T Consensus 93 yg~~~ft~lhdlcerhpDvvLlctsil-siekilaty-pfq---rlrrgtlfvdvlSvKefek~lfekYLPk-------- 159 (480)
T KOG2380|consen 93 YGSAKFTLLHDLCERHPDVVLLCTSIL-SIEKILATY-PFQ---RLRRGTLFVDVLSVKEFEKELFEKYLPK-------- 159 (480)
T ss_pred hcccccccHHHHHhcCCCEEEEEehhh-hHHHHHHhc-Cch---hhccceeEeeeeecchhHHHHHHHhCcc--------
Confidence 36777788888765 599999999764 556666321 111 1246789999888877766677776643
Q ss_pred CCCCceEEE-ecCCCCHHHHhcCc-eEEEe----ecC----HHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHH
Q 024066 84 SWENPVMLD-APVSGGVLAAEAGT-LTFMV----GGS----EDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA 153 (273)
Q Consensus 84 ~~~g~~~ld-apv~G~~~~a~~g~-l~~~v----gG~----~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~~~ 153 (273)
++..+- -|+.|.....-..+ |++++ .|. ++-++.+.++|.+.+.+.+++.--. -=|.+...-.-
T Consensus 160 ---dfDIlctHpmfGPksvnh~wqglpfVydkvRig~~~~r~ercE~fleIf~cegckmVemS~ee---HDkiaAdsQfV 233 (480)
T KOG2380|consen 160 ---DFDILCTHPMFGPKSVNHEWQGLPFVYDKVRIGYAASRPERCEFFLEIFACEGCKMVEMSYEE---HDKIAADSQFV 233 (480)
T ss_pred ---ccceEeecCCcCCCcCCCccccCceEEEEeeccccccchHHHHHHHHHHHhcCCeEEEEEeec---ccccccchhHH
Confidence 355555 46666653333333 23332 343 5678888999999999888884211 01222222333
Q ss_pred HHHHHHHHHHHHHHHcCCCH---HHHHHHHhhcCCccc
Q 024066 154 VSMLGVSEALTLGQSLGISA---STLTKILNSSSARCW 188 (273)
Q Consensus 154 ~~~~~~~Ea~~la~~~Gl~~---~~~~~~l~~~~~~s~ 188 (273)
++.++..-.++.++.+-++. +.++++......++|
T Consensus 234 THtagr~lg~aw~~syPintkGyEnlldLseniysdsf 271 (480)
T KOG2380|consen 234 THTAGRSLGSAWAKSYPINTKGYENLLDLSENIYSDSF 271 (480)
T ss_pred HHHHHHHHHHhhhhhCceecccHHHHHHHHHHhhcchh
Confidence 34444444555566655543 445555544444444
No 154
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=74.55 E-value=11 Score=32.33 Aligned_cols=63 Identities=17% Similarity=0.147 Sum_probs=44.0
Q ss_pred CCCCCCCCHHHHH-hcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCC---CHHHHHHHHHHHhhc
Q 024066 5 MGVPTKETPFEVA-EASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI---DPQTSRNISAAVSNC 76 (273)
Q Consensus 5 ~Ga~~~~s~~e~~-~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~---~P~~~~~l~~~~~~~ 76 (273)
.|+.+.++..|++ .+.|+|++|.|+....+-... +++. +-.+++ +|.. +.+..+++.+.+++.
T Consensus 22 ~g~~~~~d~~eLl~~~vDaVviatp~~~H~e~a~~----aL~a----GkhVl~-~s~gAlad~e~~~~l~~aA~~~ 88 (229)
T TIGR03855 22 CGAKIVSDFDEFLPEDVDIVVEAASQEAVKEYAEK----ILKN----GKDLLI-MSVGALADRELRERLREVARSS 88 (229)
T ss_pred hCCceECCHHHHhcCCCCEEEECCChHHHHHHHHH----HHHC----CCCEEE-ECCcccCCHHHHHHHHHHHHhc
Confidence 3677889999986 579999999999866544332 4432 224555 6664 667888888887764
No 155
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=73.88 E-value=2.8 Score=31.80 Aligned_cols=40 Identities=28% Similarity=0.155 Sum_probs=26.4
Q ss_pred HHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCC
Q 024066 14 FEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 62 (273)
Q Consensus 14 ~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~ 62 (273)
.+...++|+||+|+|+... .+.... ++ ..|..|||+|+..
T Consensus 61 ~~~~~~~Dvvf~a~~~~~~-~~~~~~---~~-----~~g~~ViD~s~~~ 100 (121)
T PF01118_consen 61 PEELSDVDVVFLALPHGAS-KELAPK---LL-----KAGIKVIDLSGDF 100 (121)
T ss_dssp GHHHTTESEEEE-SCHHHH-HHHHHH---HH-----HTTSEEEESSSTT
T ss_pred hhHhhcCCEEEecCchhHH-HHHHHH---Hh-----hCCcEEEeCCHHH
Confidence 3455899999999998754 334321 22 2457899999865
No 156
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=73.87 E-value=3.6 Score=37.99 Aligned_cols=62 Identities=11% Similarity=0.128 Sum_probs=46.3
Q ss_pred CCCHHHHHhcCCEEEEeCCChHH----HHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 10 KETPFEVAEASDVVITMLPSSSH----VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 10 ~~s~~e~~~~advvi~~v~~~~a----v~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
..+..|++++||+|++++|-... .+.++.. ..++.+ ++|.++||.|=...=.-..+.+.+.+
T Consensus 158 ~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~--~~l~~m--k~gailIN~aRG~vVDe~AL~~aL~~ 223 (378)
T PRK15438 158 FRSLDELVQEADILTFHTPLFKDGPYKTLHLADE--KLIRSL--KPGAILINACRGAVVDNTALLTCLNE 223 (378)
T ss_pred cCCHHHHHhhCCEEEEeCCCCCCcccccccccCH--HHHhcC--CCCcEEEECCCchhcCHHHHHHHHHh
Confidence 56899999999999998885443 3333321 344544 46789999999988888888888865
No 157
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=73.62 E-value=3.9 Score=36.68 Aligned_cols=41 Identities=24% Similarity=0.207 Sum_probs=28.5
Q ss_pred CHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCC
Q 024066 12 TPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 61 (273)
Q Consensus 12 s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~ 61 (273)
++.++.+++|++|+|+|+..+.+ .... +. ..|..|||+|+.
T Consensus 42 ~~~~~~~~~D~vFlalp~~~s~~-~~~~---~~-----~~g~~VIDlSad 82 (310)
T TIGR01851 42 ERAKLLNAADVAILCLPDDAARE-AVSL---VD-----NPNTCIIDASTA 82 (310)
T ss_pred CHhHhhcCCCEEEECCCHHHHHH-HHHH---HH-----hCCCEEEECChH
Confidence 45667788999999999986544 3321 21 245789999964
No 158
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=73.50 E-value=16 Score=31.86 Aligned_cols=62 Identities=18% Similarity=0.301 Sum_probs=41.2
Q ss_pred CCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 6 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 6 Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
|+.+.+++.++...+|+||.|.+.. .+.+++.. .++. +-.+|+.++..++++.+++.+..++
T Consensus 55 gv~~~~d~~~l~~~~DvVIdfT~p~-~~~~~~~~---al~~----g~~vVigttg~~~e~~~~l~~aA~~ 116 (266)
T TIGR00036 55 GVPVTDDLEAVETDPDVLIDFTTPE-GVLNHLKF---ALEH----GVRLVVGTTGFSEEDKQELADLAEK 116 (266)
T ss_pred CceeeCCHHHhcCCCCEEEECCChH-HHHHHHHH---HHHC----CCCEEEECCCCCHHHHHHHHHHHhc
Confidence 5666788888755689999988654 44555432 3332 3357777777788888888776543
No 159
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=72.95 E-value=4.5 Score=36.85 Aligned_cols=43 Identities=30% Similarity=0.232 Sum_probs=29.9
Q ss_pred CHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCH
Q 024066 12 TPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDP 63 (273)
Q Consensus 12 s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P 63 (273)
++.++..++|+||+|+|+..+.+ +... ++ ..|..|||.|+..-
T Consensus 61 ~~~~~~~~~DvVf~alP~~~s~~-~~~~---~~-----~~G~~VIDlS~~fR 103 (346)
T TIGR01850 61 DEEEIAEDADVVFLALPHGVSAE-LAPE---LL-----AAGVKVIDLSADFR 103 (346)
T ss_pred CHHHhhcCCCEEEECCCchHHHH-HHHH---HH-----hCCCEEEeCChhhh
Confidence 55666668999999999986544 4321 22 24578999998753
No 160
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=72.61 E-value=4.1 Score=36.28 Aligned_cols=41 Identities=5% Similarity=0.107 Sum_probs=29.7
Q ss_pred CCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCC
Q 024066 11 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 62 (273)
Q Consensus 11 ~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~ 62 (273)
.++.+.+++||+||+++.-+.-+..=+ + ++|.++||.++..
T Consensus 193 ~~l~~~~~~ADIvIsAvGkp~~i~~~~-----i------k~gavVIDvGin~ 233 (297)
T PRK14186 193 QDLASITREADILVAAAGRPNLIGAEM-----V------KPGAVVVDVGIHR 233 (297)
T ss_pred CCHHHHHhhCCEEEEccCCcCccCHHH-----c------CCCCEEEEecccc
Confidence 457888999999999999886443322 1 3568999976553
No 161
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=71.51 E-value=3 Score=37.65 Aligned_cols=56 Identities=18% Similarity=0.289 Sum_probs=38.1
Q ss_pred CCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHH
Q 024066 7 VPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAV 73 (273)
Q Consensus 7 a~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~ 73 (273)
+..++++.|++++||+|++|.|..+. ++.. ..+ ++|..|.-.++..|. .+|+...+
T Consensus 180 v~~~~~~~eav~~aDiVitaT~s~~P---~~~~--~~l-----~~g~~v~~vGs~~p~-~~Eld~~~ 235 (325)
T TIGR02371 180 VRAATDPREAVEGCDILVTTTPSRKP---VVKA--DWV-----SEGTHINAIGADAPG-KQELDPEI 235 (325)
T ss_pred EEEeCCHHHHhccCCEEEEecCCCCc---EecH--HHc-----CCCCEEEecCCCCcc-cccCCHHH
Confidence 45688999999999999999988643 2221 122 356777888888874 34554443
No 162
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=70.07 E-value=5.7 Score=32.02 Aligned_cols=42 Identities=12% Similarity=0.191 Sum_probs=27.5
Q ss_pred CCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCH
Q 024066 11 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDP 63 (273)
Q Consensus 11 ~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P 63 (273)
.++.+.+++||+||+++..+.-+..-+ + ++|.++||.++...
T Consensus 71 ~~l~~~~~~ADIVVsa~G~~~~i~~~~-----i------k~gavVIDvG~~~~ 112 (160)
T PF02882_consen 71 KNLQEITRRADIVVSAVGKPNLIKADW-----I------KPGAVVIDVGINYV 112 (160)
T ss_dssp SSHHHHHTTSSEEEE-SSSTT-B-GGG-----S-------TTEEEEE--CEEE
T ss_pred CcccceeeeccEEeeeecccccccccc-----c------cCCcEEEecCCccc
Confidence 458899999999999999876544322 1 35789999877655
No 163
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=69.15 E-value=5.5 Score=35.22 Aligned_cols=40 Identities=8% Similarity=0.045 Sum_probs=29.3
Q ss_pred CCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCC
Q 024066 11 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 61 (273)
Q Consensus 11 ~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~ 61 (273)
.++++.+++||+||+++.-+.-+..=+ + ++|.++||.++.
T Consensus 192 ~nl~~~~~~ADIvIsAvGkp~~i~~~~-----v------k~GavVIDvGin 231 (282)
T PRK14166 192 KDLSLYTRQADLIIVAAGCVNLLRSDM-----V------KEGVIVVDVGIN 231 (282)
T ss_pred CCHHHHHhhCCEEEEcCCCcCccCHHH-----c------CCCCEEEEeccc
Confidence 457888999999999999886544322 1 356899997654
No 164
>PF09130 DUF1932: Domain of unknown function (DUF1932); InterPro: IPR015814 This domain has been found in a number of eukaryotic and prokaryotic proteins, some of which are predicted to be 6-phosphogluconate dehydrogenase, NAD-binding proteins.; PDB: 3QSG_A 1I36_A 4EZB_A.
Probab=67.12 E-value=9.5 Score=26.25 Aligned_cols=72 Identities=14% Similarity=0.089 Sum_probs=43.6
Q ss_pred HHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 024066 166 GQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDI 245 (273)
Q Consensus 166 a~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~g~~~~~~~~~~~~ 245 (273)
|+++|+... +++.|..+..+.+. ... . +...+. ......+...|+.+.++..+.|++..|.+++.++
T Consensus 1 A~~~Gv~~~-ll~sl~~s~p~~~~-~~~-------~-~~v~~~---~~hA~Rr~~EM~Eia~tl~~~g~~~~m~~a~a~~ 67 (73)
T PF09130_consen 1 ARRYGVEDE-LLASLAESFPGLDW-ALA-------E-RLVPRM---APHAYRRAAEMEEIADTLAELGLPPEMFRAAAEV 67 (73)
T ss_dssp HHHTT-HHH-HHHHHHHHSCCSCH-HHH-------H-HHHHHH---HHHHHHHHHHHHHHHHHHHCTT---HHHHHHHHH
T ss_pred CcccccHHH-HHHHHHHHCCcchH-HHH-------H-HHcccc---hhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 678999775 66777765432110 100 0 000010 1224567899999999999999999999999999
Q ss_pred HHHHH
Q 024066 246 YAKLC 250 (273)
Q Consensus 246 ~~~a~ 250 (273)
|+...
T Consensus 68 ~~~~a 72 (73)
T PF09130_consen 68 LRRVA 72 (73)
T ss_dssp HHHCH
T ss_pred HHHhh
Confidence 98653
No 165
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=67.04 E-value=6.1 Score=35.14 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=23.3
Q ss_pred cCCCCCCCCHHHHHhcCCEEEEeCCCh
Q 024066 4 DMGVPTKETPFEVAEASDVVITMLPSS 30 (273)
Q Consensus 4 ~~Ga~~~~s~~e~~~~advvi~~v~~~ 30 (273)
..|++.+++..++..++|+|+..+|-.
T Consensus 40 ~~g~~~~~~~~~~~~~ad~ii~~~p~~ 66 (296)
T PRK08306 40 FTGATKSSSLEEALSDVDVIILPVPGT 66 (296)
T ss_pred cCCceeeccHHHHhccCCEEEECCccc
Confidence 468889999999999999999998853
No 166
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=66.20 E-value=6.4 Score=35.38 Aligned_cols=40 Identities=28% Similarity=0.220 Sum_probs=27.3
Q ss_pred HHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCC
Q 024066 13 PFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 61 (273)
Q Consensus 13 ~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~ 61 (273)
..+...++|+||+|+|+..+.+ .... +. ..|..|||+|+.
T Consensus 44 ~~~~~~~~DvvFlalp~~~s~~-~~~~---~~-----~~g~~VIDlSad 83 (313)
T PRK11863 44 RRELLNAADVAILCLPDDAARE-AVAL---ID-----NPATRVIDASTA 83 (313)
T ss_pred chhhhcCCCEEEECCCHHHHHH-HHHH---HH-----hCCCEEEECChh
Confidence 3455678999999999986554 3321 22 245789999964
No 167
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=64.71 E-value=12 Score=33.33 Aligned_cols=51 Identities=18% Similarity=0.193 Sum_probs=31.2
Q ss_pred CCCCCC--CCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHH
Q 024066 5 MGVPTK--ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQ 64 (273)
Q Consensus 5 ~Ga~~~--~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~ 64 (273)
.|++.. ++..+.+.++|+||.|+|..--.++.+ +.+ .++.+|||+++..-.
T Consensus 194 ~G~~~~~~~~l~~~l~~aDiVI~t~p~~~i~~~~l-------~~~--~~g~vIIDla~~pgg 246 (296)
T PRK08306 194 MGLSPFHLSELAEEVGKIDIIFNTIPALVLTKEVL-------SKM--PPEALIIDLASKPGG 246 (296)
T ss_pred cCCeeecHHHHHHHhCCCCEEEECCChhhhhHHHH-------HcC--CCCcEEEEEccCCCC
Confidence 354433 355677888999999987643223322 222 345788998877644
No 168
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=64.61 E-value=7 Score=32.63 Aligned_cols=39 Identities=31% Similarity=0.362 Sum_probs=29.4
Q ss_pred HHHHHhcCCEEEEeCCChHH-HHHHHcCCCCcccCCCCCCCeEEEEcCCCC
Q 024066 13 PFEVAEASDVVITMLPSSSH-VLDVYNGPNGLLQGGNSVRPQLLIDSSTID 62 (273)
Q Consensus 13 ~~e~~~~advvi~~v~~~~a-v~~v~~~~~g~l~~~~~~~g~iiid~ST~~ 62 (273)
..+.+++||+||++++.+.- +..=+ + ++|.++||.++..
T Consensus 120 l~~~~~~ADIVIsAvG~~~~~i~~d~-----i------k~GavVIDVGi~~ 159 (197)
T cd01079 120 TLDCLSQSDVVITGVPSPNYKVPTEL-----L------KDGAICINFASIK 159 (197)
T ss_pred HHHHhhhCCEEEEccCCCCCccCHHH-----c------CCCcEEEEcCCCc
Confidence 56889999999999999865 33222 1 3568999998764
No 169
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=64.33 E-value=12 Score=33.21 Aligned_cols=41 Identities=5% Similarity=0.085 Sum_probs=30.4
Q ss_pred CCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCC
Q 024066 11 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 62 (273)
Q Consensus 11 ~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~ 62 (273)
.++.+.+++||+||+++.-+.-+..= .+ ++|.+|||.++..
T Consensus 199 ~~l~~~~~~ADIvv~AvG~p~~i~~~------~v-----k~gavVIDvGin~ 239 (287)
T PRK14176 199 DDLKKYTLDADILVVATGVKHLIKAD------MV-----KEGAVIFDVGITK 239 (287)
T ss_pred CCHHHHHhhCCEEEEccCCccccCHH------Hc-----CCCcEEEEecccc
Confidence 46788899999999999887543221 21 3568999999864
No 170
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=64.13 E-value=10 Score=33.61 Aligned_cols=47 Identities=21% Similarity=0.197 Sum_probs=31.8
Q ss_pred CHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHH
Q 024066 12 TPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSR 67 (273)
Q Consensus 12 s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~ 67 (273)
+..+++.++|+||.|+|..-...+ .++.+ +++.++||+++..-.+--
T Consensus 202 ~l~~~l~~aDiVint~P~~ii~~~-------~l~~~--k~~aliIDlas~Pg~tdf 248 (287)
T TIGR02853 202 KLEEKVAEIDIVINTIPALVLTAD-------VLSKL--PKHAVIIDLASKPGGTDF 248 (287)
T ss_pred HHHHHhccCCEEEECCChHHhCHH-------HHhcC--CCCeEEEEeCcCCCCCCH
Confidence 456788899999999987522122 33333 356899999997655433
No 171
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=63.31 E-value=10 Score=33.58 Aligned_cols=40 Identities=10% Similarity=0.099 Sum_probs=28.0
Q ss_pred CCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCC
Q 024066 11 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 61 (273)
Q Consensus 11 ~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~ 61 (273)
.+..+.+++||+||++++.+.-+..- .+ ++|.++||.++.
T Consensus 193 ~~l~~~~~~ADIVV~avG~~~~i~~~------~i-----k~gavVIDVGin 232 (285)
T PRK14189 193 RDLAAHTRQADIVVAAVGKRNVLTAD------MV-----KPGATVIDVGMN 232 (285)
T ss_pred CCHHHHhhhCCEEEEcCCCcCccCHH------Hc-----CCCCEEEEcccc
Confidence 35778899999999999976533221 11 356899997754
No 172
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=62.59 E-value=11 Score=33.39 Aligned_cols=41 Identities=10% Similarity=0.118 Sum_probs=29.8
Q ss_pred CCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCC
Q 024066 11 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 62 (273)
Q Consensus 11 ~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~ 62 (273)
.++++.+++||+||+++..+.-+..=+ + ++|.++||.++..
T Consensus 190 ~~l~~~~~~ADIvIsAvGkp~~i~~~~-----v------k~GavVIDVGin~ 230 (287)
T PRK14173 190 QDLPAVTRRADVLVVAVGRPHLITPEM-----V------RPGAVVVDVGINR 230 (287)
T ss_pred CCHHHHHhhCCEEEEecCCcCccCHHH-----c------CCCCEEEEccCcc
Confidence 467889999999999999885443222 1 3568999977654
No 173
>PRK11579 putative oxidoreductase; Provisional
Probab=60.02 E-value=34 Score=30.85 Aligned_cols=62 Identities=16% Similarity=0.270 Sum_probs=41.4
Q ss_pred CCCCCCCHHHHHh--cCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhh
Q 024066 6 GVPTKETPFEVAE--ASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSN 75 (273)
Q Consensus 6 Ga~~~~s~~e~~~--~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~-ST~~P~~~~~l~~~~~~ 75 (273)
+.+..+|..|+++ +.|+|++|+|+....+-+.. .++. +..++++- -+.+.+++++|.+.+++
T Consensus 49 ~~~~~~~~~ell~~~~vD~V~I~tp~~~H~~~~~~----al~a----GkhVl~EKPla~t~~ea~~l~~~a~~ 113 (346)
T PRK11579 49 TVTVVSEPQHLFNDPNIDLIVIPTPNDTHFPLAKA----ALEA----GKHVVVDKPFTVTLSQARELDALAKS 113 (346)
T ss_pred CCceeCCHHHHhcCCCCCEEEEcCCcHHHHHHHHH----HHHC----CCeEEEeCCCCCCHHHHHHHHHHHHH
Confidence 4456788888886 47889999998877665543 3322 33577763 34567778888777665
No 174
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=59.77 E-value=7.1 Score=35.35 Aligned_cols=58 Identities=21% Similarity=0.247 Sum_probs=38.6
Q ss_pred CCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 7 VPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 7 a~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
+..++|+++++++||+|++|.|+.+ .++.+ ..+ .+|..|.-+++- ...++++...+-.
T Consensus 183 v~a~~s~~~av~~aDiIvt~T~s~~---Pil~~--~~l-----~~G~hI~aiGad-~p~k~Eld~e~l~ 240 (330)
T COG2423 183 VGAADSAEEAVEGADIVVTATPSTE---PVLKA--EWL-----KPGTHINAIGAD-APGKRELDPEVLA 240 (330)
T ss_pred ceeccCHHHHhhcCCEEEEecCCCC---CeecH--hhc-----CCCcEEEecCCC-CcccccCCHHHHH
Confidence 4678999999999999999999986 34432 122 345444555555 4445666666543
No 175
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=59.74 E-value=33 Score=30.89 Aligned_cols=62 Identities=15% Similarity=0.217 Sum_probs=41.7
Q ss_pred CCCCCCCHHHHHhc--CCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHh
Q 024066 6 GVPTKETPFEVAEA--SDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVS 74 (273)
Q Consensus 6 Ga~~~~s~~e~~~~--advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~ 74 (273)
|..+.+|..|+.+. +|+.+++||.+...+.+.+. +-.+ -+ .+||-++-.......++.+.++
T Consensus 73 Gvpvy~sv~ea~~~~~~D~avI~VPa~~v~dai~Ea---~~aG---I~-~~ViiteGfpe~d~~~l~~~~~ 136 (317)
T PTZ00187 73 GLPVFATVKEAKKATGADASVIYVPPPHAASAIIEA---IEAE---IP-LVVCITEGIPQHDMVKVKHALL 136 (317)
T ss_pred CccccCCHHHHhcccCCCEEEEecCHHHHHHHHHHH---HHcC---CC-EEEEECCCCchhhHHHHHHHHh
Confidence 78889999999987 99999999988666655432 1111 12 4556556565555666665543
No 176
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=59.47 E-value=14 Score=32.73 Aligned_cols=41 Identities=17% Similarity=0.214 Sum_probs=29.5
Q ss_pred CCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCC
Q 024066 11 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 62 (273)
Q Consensus 11 ~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~ 62 (273)
.++++.+++||+||+++..+.-+..=+ + .+|.++||.++..
T Consensus 192 ~~l~~~~~~ADIvI~AvG~~~~i~~~~-----v------k~GavVIDvGin~ 232 (284)
T PRK14170 192 KDLPQVAKEADILVVATGLAKFVKKDY-----I------KPGAIVIDVGMDR 232 (284)
T ss_pred CCHHHHHhhCCEEEEecCCcCccCHHH-----c------CCCCEEEEccCcc
Confidence 357888999999999999886443222 1 3568999977654
No 177
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=59.22 E-value=48 Score=29.46 Aligned_cols=65 Identities=15% Similarity=0.212 Sum_probs=41.1
Q ss_pred CCCCCCCCHHHHHhc--CCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 024066 5 MGVPTKETPFEVAEA--SDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 76 (273)
Q Consensus 5 ~Ga~~~~s~~e~~~~--advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~ 76 (273)
.|.+...|++|+.+. .|++++++|.+. +.+++.. ..+. ..+ ..+|-.+-...+..+++.+.++++
T Consensus 49 ~G~~~y~sv~dlp~~~~~DlAvi~vp~~~-v~~~l~e---~~~~--gvk-~avI~s~Gf~~~~~~~l~~~a~~~ 115 (291)
T PRK05678 49 LGLPVFNTVAEAVEATGANASVIYVPPPF-AADAILE---AIDA--GID-LIVCITEGIPVLDMLEVKAYLERK 115 (291)
T ss_pred eCeeccCCHHHHhhccCCCEEEEEcCHHH-HHHHHHH---HHHC--CCC-EEEEECCCCCHHHHHHHHHHHHHc
Confidence 377889999999987 899999999764 4445543 2221 012 345544444444455777776653
No 178
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=58.56 E-value=15 Score=32.48 Aligned_cols=41 Identities=7% Similarity=0.209 Sum_probs=29.8
Q ss_pred CCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCC
Q 024066 11 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 62 (273)
Q Consensus 11 ~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~ 62 (273)
.+.++..++||+||+++.-+.-+..=+ + ++|.++||.++..
T Consensus 194 ~~l~~~~~~ADIvIsAvGk~~~i~~~~-----i------k~gavVIDvGin~ 234 (284)
T PRK14177 194 QNLPSIVRQADIIVGAVGKPEFIKADW-----I------SEGAVLLDAGYNP 234 (284)
T ss_pred CCHHHHHhhCCEEEEeCCCcCccCHHH-----c------CCCCEEEEecCcc
Confidence 347788999999999999886543322 1 3568999987654
No 179
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=57.84 E-value=56 Score=28.97 Aligned_cols=64 Identities=11% Similarity=0.235 Sum_probs=39.6
Q ss_pred CCCCCCCCHHHHHhc--CCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHH-HHHHHHHHhhc
Q 024066 5 MGVPTKETPFEVAEA--SDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQT-SRNISAAVSNC 76 (273)
Q Consensus 5 ~Ga~~~~s~~e~~~~--advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~-~~~l~~~~~~~ 76 (273)
.|.+...|..|+.+. .|++++++|.+ .+.+++.. +.+. ..+ ..+| .|..-+++ .+++.+.++++
T Consensus 47 ~G~~~y~sv~dlp~~~~~Dlavi~vpa~-~v~~~l~e---~~~~--Gvk-~avI-is~Gf~e~~~~~l~~~a~~~ 113 (286)
T TIGR01019 47 LGLPVFDSVKEAVEETGANASVIFVPAP-FAADAIFE---AIDA--GIE-LIVC-ITEGIPVHDMLKVKRYMEES 113 (286)
T ss_pred cCeeccCCHHHHhhccCCCEEEEecCHH-HHHHHHHH---HHHC--CCC-EEEE-ECCCCCHHHHHHHHHHHHHc
Confidence 477889999999887 79999999976 44445543 2221 012 3444 44444444 45666666553
No 180
>PF08546 ApbA_C: Ketopantoate reductase PanE/ApbA C terminal; InterPro: IPR013752 This is the C-terminal domain of 2-dehydropantoate 2-reductases also known as ketopantoate reductases, 1.1.1.169 from EC. The reaction catalysed by this enzyme is: (R)-pantoate + NADP(+) = 2-dehydropantoate + NADPH. AbpA catalyses the NADPH reduction of ketopantoic acid to pantoic acid in the alternative pyrimidine biosynthetic (APB) pathway []. ApbA and PanE are allelic []. ApbA, the ketopantoate reductase enzyme is required for the synthesis of thiamine via the APB biosynthetic pathway []. ; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 1YJQ_A 1KS9_A 2OFP_A 1YON_A 2EW2_B 3EGO_B 3HN2_D 3GHY_B 3G17_E 3HWR_B ....
Probab=57.46 E-value=32 Score=25.84 Aligned_cols=85 Identities=13% Similarity=0.118 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCCH--HHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHH
Q 024066 152 MAVSMLGVSEALTLGQSLGISA--STLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASA 229 (273)
Q Consensus 152 ~~~~~~~~~Ea~~la~~~Gl~~--~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a 229 (273)
.......+.|+++++++.|++. +.+.+.+.......+ . ..+.++.. +..|.. . -..-=...+++.+
T Consensus 37 ~~~~~~l~~E~~~va~a~G~~l~~~~~~~~~~~~~~~~~--~---~~~SM~~D-~~~gr~---t---Eid~i~G~vv~~a 104 (125)
T PF08546_consen 37 RELIRALMREVIAVARALGIPLDPDDLEEAIERLIRSTP--D---NRSSMLQD-IEAGRP---T---EIDYINGYVVRLA 104 (125)
T ss_dssp HHHHHHHHHHHHHHHHHTTSS--HHHHHHHHHHHHHCTT--T---T--HHHHH-HHTTB--------SHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcC--C---ccccHHHH-HHHccc---c---cHHHHHHHHHHHH
Confidence 3455678899999999999643 334444432110000 0 01111110 111110 0 1112256788999
Q ss_pred HHhCCCChHHHHHHHHHHH
Q 024066 230 KEVGVDCPLTSQAQDIYAK 248 (273)
Q Consensus 230 ~~~g~~~~~~~~~~~~~~~ 248 (273)
++.|+++|..+.+.++.+.
T Consensus 105 ~~~gv~~P~~~~i~~lvk~ 123 (125)
T PF08546_consen 105 KKHGVPTPVNETIYALVKA 123 (125)
T ss_dssp HHTT---HHHHHHHHHHHH
T ss_pred HHHCCCCcHHHHHHHHHHH
Confidence 9999999999999887754
No 181
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=57.40 E-value=38 Score=25.68 Aligned_cols=59 Identities=24% Similarity=0.267 Sum_probs=34.6
Q ss_pred cCCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCH-HHHHHHHH
Q 024066 4 DMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDP-QTSRNISA 71 (273)
Q Consensus 4 ~~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P-~~~~~l~~ 71 (273)
..|..+.++..++.+.+||+|=+- .++.+.+.+.- .++ .+.-+|-.||.-- ++.+++.+
T Consensus 52 ~~~~~v~~~l~~~~~~~DVvIDfT-~p~~~~~~~~~---~~~-----~g~~~ViGTTG~~~~~~~~l~~ 111 (124)
T PF01113_consen 52 PLGVPVTDDLEELLEEADVVIDFT-NPDAVYDNLEY---ALK-----HGVPLVIGTTGFSDEQIDELEE 111 (124)
T ss_dssp T-SSBEBS-HHHHTTH-SEEEEES--HHHHHHHHHH---HHH-----HT-EEEEE-SSSHHHHHHHHHH
T ss_pred CcccccchhHHHhcccCCEEEEcC-ChHHhHHHHHH---HHh-----CCCCEEEECCCCCHHHHHHHHH
Confidence 356777899999999999887777 67777766642 332 2345565666654 44444444
No 182
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=57.39 E-value=16 Score=32.43 Aligned_cols=41 Identities=7% Similarity=0.050 Sum_probs=29.5
Q ss_pred CCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCC
Q 024066 11 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 62 (273)
Q Consensus 11 ~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~ 62 (273)
.++.+.+++||+||+++..+.-+..=+ + .+|.++||.++..
T Consensus 195 ~~l~~~~k~ADIvV~AvGkp~~i~~~~-----i------k~GavVIDvGin~ 235 (284)
T PRK14193 195 RDLAAHTRRADIIVAAAGVAHLVTADM-----V------KPGAAVLDVGVSR 235 (284)
T ss_pred CCHHHHHHhCCEEEEecCCcCccCHHH-----c------CCCCEEEEccccc
Confidence 457889999999999999886433222 1 3568999977554
No 183
>PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A ....
Probab=56.97 E-value=15 Score=28.67 Aligned_cols=72 Identities=17% Similarity=0.176 Sum_probs=41.6
Q ss_pred ccCCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhcc
Q 024066 3 SDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKK 82 (273)
Q Consensus 3 ~~~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~ 82 (273)
.++||++.++..|+..+||+|+..=+ +. ..++- .+ +.|+++|-+.... ...++.+.+.++
T Consensus 48 ~~aGA~I~~~~~ev~~~adiIl~v~~-p~-~~e~~-----~l-----~~g~~li~~~~~~--~~~~~~~~l~~~------ 107 (136)
T PF05222_consen 48 EEAGAEIVSRAEEVYSDADIILKVKP-PS-EEELA-----LL-----KPGQTLIGFLHPA--QNKELLEALAKK------ 107 (136)
T ss_dssp HHTTEEEESSHHHHHTTSSEEEESS-----GGGGG-----GS------TTCEEEEE--GG--GHHHHHHHHHHC------
T ss_pred hhCCcEEecCchhhcccCCEEEEECC-CC-HHHHh-----hc-----CCCcEEEEeeccc--cCHHHHHHHHHC------
Confidence 46799999999999999998855444 32 11111 11 3567777554444 355666666542
Q ss_pred CCCCCceEEEecCCCC
Q 024066 83 DSWENPVMLDAPVSGG 98 (273)
Q Consensus 83 g~~~g~~~ldapv~G~ 98 (273)
++..++--..-.
T Consensus 108 ----~it~~a~E~ipr 119 (136)
T PF05222_consen 108 ----GITAFALELIPR 119 (136)
T ss_dssp ----TEEEEEGGGSBS
T ss_pred ----CCEEEEhhhCcC
Confidence 377877654433
No 184
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=56.88 E-value=15 Score=32.41 Aligned_cols=41 Identities=12% Similarity=0.131 Sum_probs=29.1
Q ss_pred CCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCC
Q 024066 11 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 62 (273)
Q Consensus 11 ~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~ 62 (273)
.++.+.+++||+||+++..+.-+..=+ + .+|.++||.++..
T Consensus 192 ~~l~~~~~~ADIvV~AvGkp~~i~~~~-----v------k~gavvIDvGin~ 232 (281)
T PRK14183 192 KDLKAHTKKADIVIVGVGKPNLITEDM-----V------KEGAIVIDIGINR 232 (281)
T ss_pred cCHHHHHhhCCEEEEecCcccccCHHH-----c------CCCcEEEEeeccc
Confidence 357788999999999998876543222 1 3568999977544
No 185
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=56.31 E-value=83 Score=23.54 Aligned_cols=83 Identities=20% Similarity=0.282 Sum_probs=44.8
Q ss_pred CEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCC--H--HHHHHHHHHHhhchhhhccCCCCCceEEEecCC
Q 024066 21 DVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTID--P--QTSRNISAAVSNCILKEKKDSWENPVMLDAPVS 96 (273)
Q Consensus 21 dvvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~--P--~~~~~l~~~~~~~g~~~~~g~~~g~~~ldapv~ 96 (273)
++-+..-++++++.++-. .+-++|||.-... | .....+.+.+++. |..|+.-||.
T Consensus 8 ~~~vs~Q~~~~d~~~la~-----------~GfktVInlRpd~E~~~qp~~~~~~~~a~~~----------Gl~y~~iPv~ 66 (110)
T PF04273_consen 8 DLSVSGQPSPEDLAQLAA-----------QGFKTVINLRPDGEEPGQPSSAEEAAAAEAL----------GLQYVHIPVD 66 (110)
T ss_dssp TEEEECS--HHHHHHHHH-----------CT--EEEE-S-TTSTTT-T-HHCHHHHHHHC----------T-EEEE----
T ss_pred CeEECCCCCHHHHHHHHH-----------CCCcEEEECCCCCCCCCCCCHHHHHHHHHHc----------CCeEEEeecC
Confidence 566677788888876653 2336788775441 2 1333455666553 4899999998
Q ss_pred CCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCCe-EEeCC
Q 024066 97 GGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNT-IYCGG 137 (273)
Q Consensus 97 G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~i-~~~G~ 137 (273)
++.. +++.++.+..+|+.+.+++ .||..
T Consensus 67 ~~~~-------------~~~~v~~f~~~l~~~~~Pvl~hC~s 95 (110)
T PF04273_consen 67 GGAI-------------TEEDVEAFADALESLPKPVLAHCRS 95 (110)
T ss_dssp TTT---------------HHHHHHHHHHHHTTTTSEEEE-SC
T ss_pred CCCC-------------CHHHHHHHHHHHHhCCCCEEEECCC
Confidence 7632 2567788899999887765 57755
No 186
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=55.92 E-value=23 Score=29.43 Aligned_cols=25 Identities=12% Similarity=0.098 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHH
Q 024066 156 MLGVSEALTLGQSLGISASTLTKIL 180 (273)
Q Consensus 156 ~~~~~Ea~~la~~~Gl~~~~~~~~l 180 (273)
...+.+.+..+++.|+++......+
T Consensus 169 ~~~~~~v~~~a~~~~~~~~~aA~~~ 193 (200)
T cd01075 169 YDTLLEIFAQAKQDGITTLEAADRM 193 (200)
T ss_pred HHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 4455667777888888776655444
No 187
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=55.49 E-value=17 Score=32.23 Aligned_cols=40 Identities=15% Similarity=0.316 Sum_probs=28.9
Q ss_pred CCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCC
Q 024066 11 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 61 (273)
Q Consensus 11 ~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~ 61 (273)
.++.+.+++||+||+++.-+.-+..=+ + ++|.++||.++.
T Consensus 192 ~~l~~~~~~ADIvV~AvG~p~~i~~~~-----i------k~GavVIDvGin 231 (287)
T PRK14181 192 ENLTEILKTADIIIAAIGVPLFIKEEM-----I------AEKAVIVDVGTS 231 (287)
T ss_pred CCHHHHHhhCCEEEEccCCcCccCHHH-----c------CCCCEEEEeccc
Confidence 457888999999999999885443222 1 356899997654
No 188
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=55.27 E-value=17 Score=32.38 Aligned_cols=41 Identities=17% Similarity=0.228 Sum_probs=29.4
Q ss_pred CCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCC
Q 024066 11 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 62 (273)
Q Consensus 11 ~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~ 62 (273)
.++.+.+++||+||+++..+.-+..=+ + .+|.++||.++..
T Consensus 202 ~nl~~~~~~ADIvv~AvGk~~~i~~~~-----v------k~gavVIDvGin~ 242 (299)
T PLN02516 202 PDPESIVREADIVIAAAGQAMMIKGDW-----I------KPGAAVIDVGTNA 242 (299)
T ss_pred CCHHHHHhhCCEEEEcCCCcCccCHHH-----c------CCCCEEEEeeccc
Confidence 457889999999999998874333221 1 3568999987654
No 189
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=55.22 E-value=17 Score=32.09 Aligned_cols=40 Identities=18% Similarity=0.324 Sum_probs=28.9
Q ss_pred CCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCC
Q 024066 11 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 61 (273)
Q Consensus 11 ~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~ 61 (273)
.+..+.+++||+||+++..+.-+..=+ + ++|.++||.++.
T Consensus 193 ~~l~~~~~~ADIvIsAvGkp~~i~~~~-----i------k~gavVIDvGin 232 (278)
T PRK14172 193 KNLKEVCKKADILVVAIGRPKFIDEEY-----V------KEGAIVIDVGTS 232 (278)
T ss_pred CCHHHHHhhCCEEEEcCCCcCccCHHH-----c------CCCcEEEEeecc
Confidence 457889999999999999886543322 1 356899997544
No 190
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=55.02 E-value=15 Score=34.86 Aligned_cols=38 Identities=24% Similarity=0.210 Sum_probs=27.5
Q ss_pred CCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCC
Q 024066 5 MGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGG 47 (273)
Q Consensus 5 ~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~ 47 (273)
.|-++ .++.|++..||+|++.+||.. -..+.. .+.+.+
T Consensus 84 dGF~v-~~~~Ea~~~ADvVviLlPDt~-q~~v~~---~i~p~L 121 (487)
T PRK05225 84 NGFKV-GTYEELIPQADLVINLTPDKQ-HSDVVR---AVQPLM 121 (487)
T ss_pred cCCcc-CCHHHHHHhCCEEEEcCChHH-HHHHHH---HHHhhC
Confidence 45554 689999999999999999984 344442 355554
No 191
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=54.98 E-value=17 Score=32.34 Aligned_cols=40 Identities=10% Similarity=0.201 Sum_probs=29.1
Q ss_pred CCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCC
Q 024066 11 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 61 (273)
Q Consensus 11 ~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~ 61 (273)
.+..+.+++||+||+++..+.-+..=+ + .+|.++||.++.
T Consensus 195 ~~l~~~~~~ADIvVsAvGkp~~i~~~~-----i------k~gaiVIDVGin 234 (294)
T PRK14187 195 RDLADYCSKADILVAAVGIPNFVKYSW-----I------KKGAIVIDVGIN 234 (294)
T ss_pred CCHHHHHhhCCEEEEccCCcCccCHHH-----c------CCCCEEEEeccc
Confidence 357889999999999999886544332 1 356899996643
No 192
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=54.88 E-value=17 Score=32.21 Aligned_cols=40 Identities=10% Similarity=0.115 Sum_probs=28.8
Q ss_pred CCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCC
Q 024066 11 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 61 (273)
Q Consensus 11 ~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~ 61 (273)
.+.++..++||+||+++..+.-+..=+ + ++|.+|||.++.
T Consensus 193 ~dl~~~~k~ADIvIsAvGkp~~i~~~~-----v------k~gavVIDvGin 232 (282)
T PRK14180 193 TDLKSHTTKADILIVAVGKPNFITADM-----V------KEGAVVIDVGIN 232 (282)
T ss_pred CCHHHHhhhcCEEEEccCCcCcCCHHH-----c------CCCcEEEEeccc
Confidence 457788999999999999886543322 1 356899997654
No 193
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=54.84 E-value=14 Score=33.54 Aligned_cols=40 Identities=25% Similarity=0.140 Sum_probs=28.0
Q ss_pred HHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHH
Q 024066 16 VAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQ 64 (273)
Q Consensus 16 ~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~ 64 (273)
...++|+||+|+|++...+-+.. ++ ..|+.|||.|....-
T Consensus 65 ~~~~vD~Vf~alP~~~~~~~v~~----a~-----~aG~~VID~S~~fR~ 104 (343)
T PRK00436 65 ILAGADVVFLALPHGVSMDLAPQ----LL-----EAGVKVIDLSADFRL 104 (343)
T ss_pred HhcCCCEEEECCCcHHHHHHHHH----HH-----hCCCEEEECCcccCC
Confidence 45679999999999866543331 22 246899999977643
No 194
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=54.44 E-value=18 Score=32.17 Aligned_cols=41 Identities=17% Similarity=0.181 Sum_probs=29.5
Q ss_pred CCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCC
Q 024066 11 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 62 (273)
Q Consensus 11 ~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~ 62 (273)
.++.+.+++||+||+++..+.-+..=+ + ++|.+|||.++..
T Consensus 196 ~nl~~~~~~ADIvIsAvGkp~~i~~~~------v-----k~gavVIDvGin~ 236 (293)
T PRK14185 196 KNLKKECLEADIIIAALGQPEFVKADM------V-----KEGAVVIDVGTTR 236 (293)
T ss_pred CCHHHHHhhCCEEEEccCCcCccCHHH------c-----CCCCEEEEecCcc
Confidence 457888999999999999886543222 1 3568999977643
No 195
>PRK06823 ornithine cyclodeaminase; Validated
Probab=53.83 E-value=10 Score=34.12 Aligned_cols=55 Identities=18% Similarity=0.244 Sum_probs=37.1
Q ss_pred CCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHH
Q 024066 8 PTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAV 73 (273)
Q Consensus 8 ~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~ 73 (273)
+.++|+.+++++||+|++|.+.... ++.+ ..+ ++|..|+-.++..|. .+|+...+
T Consensus 181 ~~~~~~~~av~~ADIV~taT~s~~P---~~~~--~~l-----~~G~hi~~iGs~~p~-~~Eld~~~ 235 (315)
T PRK06823 181 NTTLDAAEVAHAANLIVTTTPSREP---LLQA--EDI-----QPGTHITAVGADSPG-KQELDAEL 235 (315)
T ss_pred EEECCHHHHhcCCCEEEEecCCCCc---eeCH--HHc-----CCCcEEEecCCCCcc-cccCCHHH
Confidence 3478999999999999999886643 3321 122 356677778887774 35555444
No 196
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=52.95 E-value=22 Score=31.48 Aligned_cols=40 Identities=8% Similarity=0.155 Sum_probs=28.0
Q ss_pred CCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCC
Q 024066 11 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 61 (273)
Q Consensus 11 ~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~ 61 (273)
.++.+.++++|+||+++..+.-+..=+ + +.|.+|||.++.
T Consensus 194 ~~l~~~~~~ADIvi~avG~p~~v~~~~-----v------k~gavVIDvGin 233 (285)
T PRK10792 194 KNLRHHVRNADLLVVAVGKPGFIPGEW-----I------KPGAIVIDVGIN 233 (285)
T ss_pred CCHHHHHhhCCEEEEcCCCcccccHHH-----c------CCCcEEEEcccc
Confidence 457788999999999997776544311 1 356889996643
No 197
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=52.43 E-value=21 Score=31.72 Aligned_cols=40 Identities=15% Similarity=0.261 Sum_probs=28.5
Q ss_pred CCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCC
Q 024066 11 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 61 (273)
Q Consensus 11 ~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~ 61 (273)
.+.++.+++||+||+++..+.-+..=+ + ++|.++||.++.
T Consensus 194 ~~L~~~~~~ADIvV~AvGkp~~i~~~~-----v------k~GavVIDvGin 233 (288)
T PRK14171 194 HNLSSITSKADIVVAAIGSPLKLTAEY-----F------NPESIVIDVGIN 233 (288)
T ss_pred CCHHHHHhhCCEEEEccCCCCccCHHH-----c------CCCCEEEEeecc
Confidence 357788999999999999886444322 1 356899996643
No 198
>PLN02522 ATP citrate (pro-S)-lyase
Probab=52.20 E-value=61 Score=32.00 Aligned_cols=66 Identities=14% Similarity=0.166 Sum_probs=46.6
Q ss_pred CCCCCCCCHHHHHh---cCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 024066 5 MGVPTKETPFEVAE---ASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 76 (273)
Q Consensus 5 ~Ga~~~~s~~e~~~---~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~ 76 (273)
.|..+.+|++|+++ ++|+.++.||.+.+.+++++.. .+.. -+ .+||-++-......+++.+.++++
T Consensus 61 ~~iPVf~tv~eA~~~~~~~~~~vifvp~~~a~da~lEa~---~a~G--Ik-~~VIiteGfpe~d~~~l~~~Ar~~ 129 (608)
T PLN02522 61 IAIPVHGSIEAACKAHPTADVFINFASFRSAAASSMEAL---KQPT--IR-VVAIIAEGVPESDTKQLIAYARAN 129 (608)
T ss_pred eCccccchHHHHHHhCCCCcEEEEeCChHHhHHHHHHHH---hhCC--CC-EEEEECCCCChhhHHHHHHHHHHc
Confidence 47889999999997 4799999999988888888642 2110 12 466656666666666777776654
No 199
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=52.19 E-value=20 Score=32.66 Aligned_cols=40 Identities=23% Similarity=0.326 Sum_probs=29.7
Q ss_pred CCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCC
Q 024066 11 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 61 (273)
Q Consensus 11 ~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~ 61 (273)
.++.+.+++||+||+++.-+.-+..=+ + ++|.+|||.++.
T Consensus 249 ~nl~~~~~~ADIvIsAvGkp~~v~~d~-----v------k~GavVIDVGin 288 (345)
T PLN02897 249 KDPEQITRKADIVIAAAGIPNLVRGSW-----L------KPGAVVIDVGTT 288 (345)
T ss_pred CCHHHHHhhCCEEEEccCCcCccCHHH-----c------CCCCEEEEcccc
Confidence 457889999999999999886544322 1 356899997764
No 200
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=51.99 E-value=19 Score=31.93 Aligned_cols=40 Identities=13% Similarity=0.218 Sum_probs=27.2
Q ss_pred CCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCC
Q 024066 11 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 61 (273)
Q Consensus 11 ~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~ 61 (273)
.++.+.+++||+||+++..+.-+..= .+ ++|.++||.++.
T Consensus 193 ~~l~~~~~~ADIvI~AvG~p~~i~~~------~i-----k~gavVIDvGi~ 232 (284)
T PRK14190 193 KNLAELTKQADILIVAVGKPKLITAD------MV-----KEGAVVIDVGVN 232 (284)
T ss_pred hhHHHHHHhCCEEEEecCCCCcCCHH------Hc-----CCCCEEEEeecc
Confidence 35678899999999999877632221 11 356889996644
No 201
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=51.93 E-value=9.3 Score=34.10 Aligned_cols=56 Identities=13% Similarity=0.167 Sum_probs=36.7
Q ss_pred CCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHH
Q 024066 7 VPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAV 73 (273)
Q Consensus 7 a~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~ 73 (273)
++.++|+.|++++||||++|.+.... ++.. +.+ ++|..|.-.++..|. .+|+...+
T Consensus 170 v~~~~~~~eav~~aDIV~taT~s~~P---~~~~--~~l-----~pg~hV~aiGs~~p~-~~El~~~~ 225 (301)
T PRK06407 170 IRPVDNAEAALRDADTITSITNSDTP---IFNR--KYL-----GDEYHVNLAGSNYPN-RREAEHSV 225 (301)
T ss_pred EEEeCCHHHHHhcCCEEEEecCCCCc---EecH--HHc-----CCCceEEecCCCCCC-cccCCHHH
Confidence 45578999999999999999987643 3321 122 245566666777763 45555544
No 202
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=51.37 E-value=72 Score=27.58 Aligned_cols=57 Identities=16% Similarity=0.198 Sum_probs=26.8
Q ss_pred CCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHH
Q 024066 7 VPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISA 71 (273)
Q Consensus 7 a~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~ 71 (273)
+...++..++.+.+|+|+.|.+.. ...+++.. .++. +-.+++-.+-.+++...++.+
T Consensus 48 i~~~~dl~~ll~~~DvVid~t~p~-~~~~~~~~---al~~----G~~vvigttG~s~~~~~~l~~ 104 (257)
T PRK00048 48 VAITDDLEAVLADADVLIDFTTPE-ATLENLEF---ALEH----GKPLVIGTTGFTEEQLAELEE 104 (257)
T ss_pred ccccCCHHHhccCCCEEEECCCHH-HHHHHHHH---HHHc----CCCEEEECCCCCHHHHHHHHH
Confidence 344556666666667666555433 33333321 2221 223444433335665555555
No 203
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=50.86 E-value=24 Score=31.52 Aligned_cols=40 Identities=13% Similarity=0.104 Sum_probs=28.4
Q ss_pred CHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCC
Q 024066 12 TPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 62 (273)
Q Consensus 12 s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~ 62 (273)
++++.+++||+||+++.-+.-+..=+ + ++|.++||.++..
T Consensus 201 ~l~~~~~~ADIvVsAvGkp~~i~~~~-----i------k~gavVIDvGin~ 240 (297)
T PRK14168 201 NLARHCQRADILIVAAGVPNLVKPEW-----I------KPGATVIDVGVNR 240 (297)
T ss_pred CHHHHHhhCCEEEEecCCcCccCHHH-----c------CCCCEEEecCCCc
Confidence 47888999999999998876433222 1 3568999976543
No 204
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=50.37 E-value=37 Score=29.57 Aligned_cols=81 Identities=15% Similarity=0.059 Sum_probs=49.5
Q ss_pred CCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCC---CHHHHHHHHHHHhhchhhhcc
Q 024066 6 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI---DPQTSRNISAAVSNCILKEKK 82 (273)
Q Consensus 6 Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~---~P~~~~~l~~~~~~~g~~~~~ 82 (273)
|....+++.++..+.|+|+.|.+.... .+.... +++ .|+-++..|+. .++...++.+.+++.
T Consensus 48 ~~~~~~d~~~l~~~~DvVve~t~~~~~-~e~~~~---aL~-----aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~------ 112 (265)
T PRK13303 48 AVRVVSSVDALPQRPDLVVECAGHAAL-KEHVVP---ILK-----AGIDCAVISVGALADEALRERLEQAAEAG------ 112 (265)
T ss_pred CCeeeCCHHHhccCCCEEEECCCHHHH-HHHHHH---HHH-----cCCCEEEeChHHhcCHHHHHHHHHHHHHC------
Confidence 566778888874569999999998644 444432 443 23334445553 566667777776653
Q ss_pred CCCCCceEEEecCCCCHHHHhc
Q 024066 83 DSWENPVMLDAPVSGGVLAAEA 104 (273)
Q Consensus 83 g~~~g~~~ldapv~G~~~~a~~ 104 (273)
| ...|++....|+......
T Consensus 113 g---~~l~v~sga~gg~d~l~~ 131 (265)
T PRK13303 113 G---ARLHLLSGAIGGIDALAA 131 (265)
T ss_pred C---CEEEEeChHhhCHHHHHH
Confidence 2 145666666676655444
No 205
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=50.21 E-value=23 Score=31.39 Aligned_cols=40 Identities=10% Similarity=0.155 Sum_probs=28.0
Q ss_pred CCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCC
Q 024066 11 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 61 (273)
Q Consensus 11 ~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~ 61 (273)
.++++.+++||+||+++.-+.-+..=+ + ++|.++||.++.
T Consensus 192 ~nl~~~~~~ADIvI~AvGk~~~i~~~~-----i------k~gaiVIDvGin 231 (282)
T PRK14182 192 ADLAGEVGRADILVAAIGKAELVKGAW-----V------KEGAVVIDVGMN 231 (282)
T ss_pred CCHHHHHhhCCEEEEecCCcCccCHHH-----c------CCCCEEEEeece
Confidence 357788999999999998775433222 1 356899996644
No 206
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=49.37 E-value=1e+02 Score=22.58 Aligned_cols=72 Identities=17% Similarity=0.215 Sum_probs=49.8
Q ss_pred HHHHHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHH
Q 024066 163 LTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQA 242 (273)
Q Consensus 163 ~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~g~~~~~~~~~ 242 (273)
-.+|+.+|++++.+.+.++.+.. .|.. ...+.| .|+ +....-++.+.++-++.+++++-+..+
T Consensus 11 ~Elc~~~gi~~~~l~eLve~GlI--------ep~~------~~~~~~--~F~-~~~l~r~~~a~rL~~dl~in~~gialv 73 (101)
T PRK10265 11 TEFCLHTGVSEEELNEIVGLGVI--------EPRE------IQETTW--VFD-DHAAIVVQRAVRLRHELALDWPGIAVA 73 (101)
T ss_pred HHHHHHHCcCHHHHHHHHHCCCe--------ecCC------CCcccc--eEC-HHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 35788999999999999876521 1110 001121 132 335667888899999999999999999
Q ss_pred HHHHHHHHH
Q 024066 243 QDIYAKLCE 251 (273)
Q Consensus 243 ~~~~~~a~~ 251 (273)
.+++++-..
T Consensus 74 l~LLd~i~~ 82 (101)
T PRK10265 74 LTLLDEIAH 82 (101)
T ss_pred HHHHHHHHH
Confidence 998876543
No 207
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=49.11 E-value=21 Score=29.00 Aligned_cols=21 Identities=19% Similarity=0.256 Sum_probs=15.2
Q ss_pred CCHHHHHhcCCEEEEeCCChH
Q 024066 11 ETPFEVAEASDVVITMLPSSS 31 (273)
Q Consensus 11 ~s~~e~~~~advvi~~v~~~~ 31 (273)
++..+.+.++|+||++++.+.
T Consensus 79 ~~l~~~l~~aDiVIsat~~~~ 99 (168)
T cd01080 79 KNLKEHTKQADIVIVAVGKPG 99 (168)
T ss_pred hhHHHHHhhCCEEEEcCCCCc
Confidence 345667778888888888764
No 208
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=48.72 E-value=1.2e+02 Score=27.72 Aligned_cols=63 Identities=16% Similarity=0.188 Sum_probs=40.3
Q ss_pred CCCCCCCCHHHHHhcCCEEEEeCCCh----HHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 024066 5 MGVPTKETPFEVAEASDVVITMLPSS----SHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 76 (273)
Q Consensus 5 ~Ga~~~~s~~e~~~~advvi~~v~~~----~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~ 76 (273)
.|+...+|..|++++.|++++++|+. ...+-+.. +++ .+-.++++--= .+++++++.+.++++
T Consensus 48 ~gi~~y~~~eell~d~Di~~V~ipt~~P~~~H~e~a~~----aL~----aGkHVL~EKPl-a~~Ea~el~~~A~~~ 114 (343)
T TIGR01761 48 LGVPLYCEVEELPDDIDIACVVVRSAIVGGQGSALARA----LLA----RGIHVLQEHPL-HPRDIQDLLRLAERQ 114 (343)
T ss_pred hCCCccCCHHHHhcCCCEEEEEeCCCCCCccHHHHHHH----HHh----CCCeEEEcCCC-CHHHHHHHHHHHHHc
Confidence 36777899999999899999998652 22221211 222 12245555443 378899988887763
No 209
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=48.21 E-value=22 Score=32.45 Aligned_cols=38 Identities=11% Similarity=0.065 Sum_probs=26.1
Q ss_pred HHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCC
Q 024066 15 EVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 61 (273)
Q Consensus 15 e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~ 61 (273)
+.+.++|+||+|+|+..+.+ .... +. ..|..|||+|..
T Consensus 65 ~~~~~~D~vf~a~p~~~s~~-~~~~---~~-----~~g~~VIDlS~~ 102 (344)
T PLN02383 65 DSFDGVDIALFSAGGSISKK-FGPI---AV-----DKGAVVVDNSSA 102 (344)
T ss_pred HHHcCCCEEEECCCcHHHHH-HHHH---HH-----hCCCEEEECCch
Confidence 44578999999999985543 4321 21 246789999864
No 210
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=48.13 E-value=28 Score=30.92 Aligned_cols=38 Identities=13% Similarity=0.203 Sum_probs=24.4
Q ss_pred CHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCC
Q 024066 12 TPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSST 60 (273)
Q Consensus 12 s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST 60 (273)
+..+.+++||+||++++.+.-+..= .+ ++|.+|||.++
T Consensus 194 ~l~~~~~~ADIVIsAvg~p~~i~~~------~v-----k~gavVIDvGi 231 (286)
T PRK14175 194 DMASYLKDADVIVSAVGKPGLVTKD------VV-----KEGAVIIDVGN 231 (286)
T ss_pred hHHHHHhhCCEEEECCCCCcccCHH------Hc-----CCCcEEEEcCC
Confidence 4667788888888888876532211 11 24578888665
No 211
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=48.12 E-value=8.5 Score=34.52 Aligned_cols=58 Identities=17% Similarity=0.321 Sum_probs=31.1
Q ss_pred CCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHH
Q 024066 7 VPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAV 73 (273)
Q Consensus 7 a~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~ 73 (273)
++.++|+++++++||+|++|.+..... -++.+ ..+ ++|..|+-.++..|+. +|+...+
T Consensus 180 v~~~~~~~~av~~aDii~taT~s~~~~-P~~~~--~~l-----~~g~hi~~iGs~~~~~-~El~~~~ 237 (313)
T PF02423_consen 180 VVAVDSAEEAVRGADIIVTATPSTTPA-PVFDA--EWL-----KPGTHINAIGSYTPGM-RELDDEL 237 (313)
T ss_dssp EEEESSHHHHHTTSSEEEE----SSEE-ESB-G--GGS------TT-EEEE-S-SSTTB-ESB-HHH
T ss_pred ceeccchhhhcccCCEEEEccCCCCCC-ccccH--HHc-----CCCcEEEEecCCCCch-hhcCHHH
Confidence 345889999999999999999876510 23322 122 3567777788777743 4554443
No 212
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=47.98 E-value=27 Score=31.13 Aligned_cols=41 Identities=12% Similarity=0.096 Sum_probs=29.0
Q ss_pred CCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCC
Q 024066 11 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 62 (273)
Q Consensus 11 ~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~ 62 (273)
.++++.+++||+||+++.-+.-+..=+ + ++|.++||.++..
T Consensus 196 ~~l~~~~~~ADIvIsAvGkp~~i~~~~-----i------k~gaiVIDvGin~ 236 (297)
T PRK14167 196 DDLAAKTRRADIVVAAAGVPELIDGSM-----L------SEGATVIDVGINR 236 (297)
T ss_pred CCHHHHHhhCCEEEEccCCcCccCHHH-----c------CCCCEEEEccccc
Confidence 456788999999999998886433222 1 3568999976544
No 213
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=47.67 E-value=19 Score=32.23 Aligned_cols=31 Identities=35% Similarity=0.527 Sum_probs=24.3
Q ss_pred CCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHc
Q 024066 6 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYN 38 (273)
Q Consensus 6 Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~ 38 (273)
|-+ +.|++|+++.+|+|++.+||-.+ .+|+.
T Consensus 62 Gf~-V~~v~ea~k~ADvim~L~PDe~q-~~vy~ 92 (338)
T COG0059 62 GFK-VYTVEEAAKRADVVMILLPDEQQ-KEVYE 92 (338)
T ss_pred CCE-eecHHHHhhcCCEEEEeCchhhH-HHHHH
Confidence 444 56899999999999999998655 45665
No 214
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=47.01 E-value=26 Score=32.12 Aligned_cols=40 Identities=18% Similarity=0.346 Sum_probs=29.0
Q ss_pred CCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCC
Q 024066 11 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 61 (273)
Q Consensus 11 ~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~ 61 (273)
.++.+.+++||+||+++..+.-+..=+ + ++|.+|||.++.
T Consensus 266 ~nl~~~~r~ADIVIsAvGkp~~i~~d~-----v------K~GAvVIDVGIn 305 (364)
T PLN02616 266 KNPEEITREADIIISAVGQPNMVRGSW-----I------KPGAVVIDVGIN 305 (364)
T ss_pred CCHHHHHhhCCEEEEcCCCcCcCCHHH-----c------CCCCEEEecccc
Confidence 457888999999999999886544322 1 356899996654
No 215
>PRK06199 ornithine cyclodeaminase; Validated
Probab=44.99 E-value=13 Score=34.39 Aligned_cols=25 Identities=24% Similarity=0.220 Sum_probs=21.0
Q ss_pred CCCCCCHHHHHhcCCEEEEeCCChH
Q 024066 7 VPTKETPFEVAEASDVVITMLPSSS 31 (273)
Q Consensus 7 a~~~~s~~e~~~~advvi~~v~~~~ 31 (273)
+..++|+.|++++||+|++|.+...
T Consensus 211 v~~~~s~~eav~~ADIVvtaT~s~~ 235 (379)
T PRK06199 211 VEVVDSIEEVVRGSDIVTYCNSGET 235 (379)
T ss_pred EEEeCCHHHHHcCCCEEEEccCCCC
Confidence 4568999999999999999997643
No 216
>PF02317 Octopine_DH: NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain; InterPro: IPR003421 This group of enzymes act on the CH-NH substrate bond using NAD(+) or NADP(+) as an acceptor. This domain is found primarily in octopine dehydrogenase (1.5.1.11 from EC), nopaline dehydrogenase (1.5.1.19 from EC), and lysopine dehydrogenase (1.5.1.16 from EC). NADPH is the preferred cofactor, but NADH is also used. Octopine dehydrogenase is involved in the reductive condensation of arginine and pyruvic acid to D-octopine []. Opine dehydrogenases can be found in both bacteria and marine cephalopods. In bacteria, some of these opine dehydrogenases are involved in crown gall tumours that are produced by Agrobacterium spp., and which encode for the opine dehydrogenases on a Ti-plasmid. These bacteria can transfer a portion of this plasmid (T-DNA) to a susceptible plant cell; the T-DNA then integrates into the plant nuclear genome, where its genes can be expressed. Some of these genes direct the synthesis and secretion of unusual amino acid and sugar derivatives called opines - these opines are used as a carbon and sometimes a nitrogen source by the infecting bacteria. Opine dehydrogenases are also found in the marine invertebrate cephalopods (octopuses, squid, and cuttlefish). For example in marine cephalopods, octopine dehydrogenase activity in mantle muscle is significantly correlated with a species' ability to buffer the acidic end products of anaerobic metabolism, with activity declining strongly with a species' habitat depth [].; GO: 0016491 oxidoreductase activity, 0050662 coenzyme binding, 0055114 oxidation-reduction process; PDB: 3IQD_B 3C7D_B 3C7A_A 3C7C_B 1BG6_A.
Probab=44.38 E-value=65 Score=25.46 Aligned_cols=28 Identities=18% Similarity=0.166 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 024066 222 LNLALASAKEVGVDCPLTSQAQDIYAKL 249 (273)
Q Consensus 222 ~~~~~~~a~~~g~~~~~~~~~~~~~~~a 249 (273)
+..+..+|+..|+++|.++....+.+..
T Consensus 122 L~~~~~la~~~GV~tP~id~~I~~a~~~ 149 (152)
T PF02317_consen 122 LVPLASLAELLGVPTPVIDSIITWASAI 149 (152)
T ss_dssp HHHHHHHHHHCT---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 5667789999999999999998877654
No 217
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=43.78 E-value=25 Score=31.15 Aligned_cols=39 Identities=8% Similarity=0.054 Sum_probs=25.9
Q ss_pred CHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCC
Q 024066 12 TPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 61 (273)
Q Consensus 12 s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~ 61 (273)
++.+.+++||+||+++..+.-+..=+ + ++|.++||.++.
T Consensus 193 ~l~~~~~~ADIvV~AvG~p~~i~~~~-----v------k~GavVIDvGi~ 231 (285)
T PRK14191 193 DLSFYTQNADIVCVGVGKPDLIKASM-----V------KKGAVVVDIGIN 231 (285)
T ss_pred HHHHHHHhCCEEEEecCCCCcCCHHH-----c------CCCcEEEEeecc
Confidence 35678889999999998775433211 1 356788886643
No 218
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=43.29 E-value=26 Score=31.10 Aligned_cols=37 Identities=11% Similarity=0.128 Sum_probs=25.5
Q ss_pred CHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcC
Q 024066 12 TPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSS 59 (273)
Q Consensus 12 s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~S 59 (273)
+..+.+++||+||+++..+.-+..=+ + ++|.++||.+
T Consensus 197 ~l~~~~~~ADIVI~AvG~p~li~~~~------v-----k~GavVIDVG 233 (286)
T PRK14184 197 DLAEECREADFLFVAIGRPRFVTADM------V-----KPGAVVVDVG 233 (286)
T ss_pred hHHHHHHhCCEEEEecCCCCcCCHHH------c-----CCCCEEEEee
Confidence 46788999999999997765433221 1 3567888855
No 219
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=43.27 E-value=1.1e+02 Score=27.22 Aligned_cols=64 Identities=13% Similarity=0.126 Sum_probs=49.7
Q ss_pred CCCCCCCHHHHHhc--CCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 024066 6 GVPTKETPFEVAEA--SDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 76 (273)
Q Consensus 6 Ga~~~~s~~e~~~~--advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~ 76 (273)
|..+.++++|++++ +|+.+++||.+-+.+++++.. -.+ -..+++-+=-+.+..+.++.+.++++
T Consensus 50 g~PVf~tV~EA~~~~~a~~svI~Vp~~~aadai~EAi---da~----i~liv~ITEgIP~~D~~~~~~~a~~~ 115 (293)
T COG0074 50 GLPVFNTVEEAVKETGANASVIFVPPPFAADAILEAI---DAG----IKLVVIITEGIPVLDMLELKRYAREK 115 (293)
T ss_pred CccHHHHHHHHHHhhCCCEEEEecCcHHHHHHHHHHH---hCC----CcEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 45677889998874 999999999999988888642 111 12577778888999999999988764
No 220
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=42.99 E-value=29 Score=30.97 Aligned_cols=39 Identities=10% Similarity=0.175 Sum_probs=26.4
Q ss_pred CHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCC
Q 024066 12 TPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 61 (273)
Q Consensus 12 s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~ 61 (273)
++.+.+++||+||+++..+.-+.. ..+ ++|.++||.+..
T Consensus 199 ~l~~~~~~ADIvI~Avg~~~li~~------~~v-----k~GavVIDVgi~ 237 (295)
T PRK14174 199 DIPSYTRQADILIAAIGKARFITA------DMV-----KPGAVVIDVGIN 237 (295)
T ss_pred hHHHHHHhCCEEEEecCccCccCH------HHc-----CCCCEEEEeecc
Confidence 568889999999999976632221 122 356899997644
No 221
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=42.58 E-value=22 Score=32.94 Aligned_cols=37 Identities=19% Similarity=0.225 Sum_probs=25.8
Q ss_pred HhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCH
Q 024066 17 AEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDP 63 (273)
Q Consensus 17 ~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P 63 (273)
++++|+||+|+|+..+ .++... + ..|..|||+|+..-
T Consensus 102 ~~~~DvVf~Alp~~~s-~~i~~~----~-----~~g~~VIDlSs~fR 138 (381)
T PLN02968 102 FSDVDAVFCCLPHGTT-QEIIKA----L-----PKDLKIVDLSADFR 138 (381)
T ss_pred hcCCCEEEEcCCHHHH-HHHHHH----H-----hCCCEEEEcCchhc
Confidence 4789999999998643 445431 1 13578999998653
No 222
>PRK10206 putative oxidoreductase; Provisional
Probab=42.54 E-value=99 Score=27.97 Aligned_cols=61 Identities=15% Similarity=0.151 Sum_probs=38.0
Q ss_pred CCCCCCHHHHHh--cCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcC-CCCHHHHHHHHHHHhh
Q 024066 7 VPTKETPFEVAE--ASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSS-TIDPQTSRNISAAVSN 75 (273)
Q Consensus 7 a~~~~s~~e~~~--~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~S-T~~P~~~~~l~~~~~~ 75 (273)
....+|..|+++ +.|+|++|+|+....+-+.. .++. +..++++-- +.+.++++++.+.+++
T Consensus 50 ~~~~~~~~ell~~~~iD~V~I~tp~~~H~~~~~~----al~a----GkhVl~EKPla~~~~ea~~l~~~a~~ 113 (344)
T PRK10206 50 IHFTSDLDEVLNDPDVKLVVVCTHADSHFEYAKR----ALEA----GKNVLVEKPFTPTLAEAKELFALAKS 113 (344)
T ss_pred CcccCCHHHHhcCCCCCEEEEeCCchHHHHHHHH----HHHc----CCcEEEecCCcCCHHHHHHHHHHHHH
Confidence 556678888875 46888888888776654442 2221 224666532 4456777777776654
No 223
>PRK07340 ornithine cyclodeaminase; Validated
Probab=42.35 E-value=18 Score=32.27 Aligned_cols=53 Identities=19% Similarity=0.261 Sum_probs=37.6
Q ss_pred CCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHh
Q 024066 10 KETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVS 74 (273)
Q Consensus 10 ~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~ 74 (273)
+++..++++++|+|++|.|...- ++.. .+ ++|..|+-.++..|. .+|+...+-
T Consensus 179 ~~~~~~av~~aDiVitaT~s~~P---l~~~--~~------~~g~hi~~iGs~~p~-~~El~~~~~ 231 (304)
T PRK07340 179 PLDGEAIPEAVDLVVTATTSRTP---VYPE--AA------RAGRLVVAVGAFTPD-MAELAPRTV 231 (304)
T ss_pred ECCHHHHhhcCCEEEEccCCCCc---eeCc--cC------CCCCEEEecCCCCCC-cccCCHHHH
Confidence 57899999999999999998853 3321 12 356788888888884 456555543
No 224
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=42.29 E-value=27 Score=30.84 Aligned_cols=40 Identities=10% Similarity=0.106 Sum_probs=25.9
Q ss_pred CCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCC
Q 024066 11 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 61 (273)
Q Consensus 11 ~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~ 61 (273)
.+..+.+++||+||.+++.+.-+..- .+ ++|.+|||.++.
T Consensus 187 ~~L~~~~~~ADIvI~Avgk~~lv~~~------~v-----k~GavVIDVgi~ 226 (279)
T PRK14178 187 ENLKAELRQADILVSAAGKAGFITPD------MV-----KPGATVIDVGIN 226 (279)
T ss_pred hHHHHHHhhCCEEEECCCcccccCHH------Hc-----CCCcEEEEeecc
Confidence 34678889999999999755322211 21 356788887654
No 225
>PRK08618 ornithine cyclodeaminase; Validated
Probab=41.30 E-value=27 Score=31.37 Aligned_cols=46 Identities=15% Similarity=0.252 Sum_probs=33.2
Q ss_pred CCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHH
Q 024066 9 TKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQT 65 (273)
Q Consensus 9 ~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~ 65 (273)
.++++.+++.++|+|++|.|.... ++. ..+ +.|+.|+-..+-.|..
T Consensus 182 ~~~~~~~~~~~aDiVi~aT~s~~p---~i~---~~l-----~~G~hV~~iGs~~p~~ 227 (325)
T PRK08618 182 VVNSADEAIEEADIIVTVTNAKTP---VFS---EKL-----KKGVHINAVGSFMPDM 227 (325)
T ss_pred EeCCHHHHHhcCCEEEEccCCCCc---chH---Hhc-----CCCcEEEecCCCCccc
Confidence 467889999999999999998743 332 122 3567888888887754
No 226
>PRK07589 ornithine cyclodeaminase; Validated
Probab=41.17 E-value=17 Score=33.15 Aligned_cols=58 Identities=9% Similarity=0.155 Sum_probs=35.2
Q ss_pred CCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHH
Q 024066 7 VPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAV 73 (273)
Q Consensus 7 a~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~ 73 (273)
+..++|+.+++++||+|++|.+...- .-++.+ ..+ ++|..|.-.++..|.. +|+-..+
T Consensus 181 v~~~~~~~~av~~ADIIvtaT~S~~~-~Pvl~~--~~l-----kpG~hV~aIGs~~p~~-~Eld~~~ 238 (346)
T PRK07589 181 IVACRSVAEAVEGADIITTVTADKTN-ATILTD--DMV-----EPGMHINAVGGDCPGK-TELHPDI 238 (346)
T ss_pred EEEeCCHHHHHhcCCEEEEecCCCCC-CceecH--HHc-----CCCcEEEecCCCCCCc-ccCCHHH
Confidence 34578999999999999999975421 123322 122 3455666666666643 4554443
No 227
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=40.40 E-value=26 Score=31.29 Aligned_cols=20 Identities=25% Similarity=0.308 Sum_probs=13.4
Q ss_pred HHHHHhcCCEEEEeCCChHH
Q 024066 13 PFEVAEASDVVITMLPSSSH 32 (273)
Q Consensus 13 ~~e~~~~advvi~~v~~~~a 32 (273)
..+++.++|+||+|++.+..
T Consensus 232 ~~~~l~~aDvVi~at~~~~~ 251 (311)
T cd05213 232 LLELLNEADVVISATGAPHY 251 (311)
T ss_pred HHHHHhcCCEEEECCCCCch
Confidence 45566677777777776654
No 228
>PF11115 DUF2623: Protein of unknown function (DUF2623); InterPro: IPR022574 This family is conserved in the Enterobacteriaceae family. Several members are named as YghW. The function is not known.
Probab=39.43 E-value=52 Score=23.81 Aligned_cols=28 Identities=18% Similarity=0.266 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 024066 156 MLGVSEALTLGQSLGISASTLTKILNSS 183 (273)
Q Consensus 156 ~~~~~Ea~~la~~~Gl~~~~~~~~l~~~ 183 (273)
..+..|+-.|++++|++.+.+.|.+..+
T Consensus 51 ~~aA~eAG~L~RrYgL~rd~v~~FF~~~ 78 (95)
T PF11115_consen 51 QLAAWEAGELTRRYGLDRDMVADFFTEG 78 (95)
T ss_pred HHHHHHHHHHHHHHCccHHHHHHHHhcC
Confidence 5678899999999999999999998765
No 229
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=38.85 E-value=17 Score=26.83 Aligned_cols=50 Identities=16% Similarity=0.199 Sum_probs=31.3
Q ss_pred CCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCC
Q 024066 6 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSST 60 (273)
Q Consensus 6 Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST 60 (273)
+.+..+++.++.+++|+||+++..++- +++-. ..+...+ .++.+|||+-.
T Consensus 53 ~~~~~~~~~~~~~~~D~vvl~t~h~~f-~~l~~--~~~~~~~--~~~~~iiD~~~ 102 (106)
T PF03720_consen 53 GVEVCDDLEEALKGADAVVLATDHDEF-RELDW--EEIAKLM--RKPPVIIDGRN 102 (106)
T ss_dssp CEEEESSHHHHHTTESEEEESS--GGG-GCCGH--HHHHHHS--CSSEEEEESSS
T ss_pred ceEEecCHHHHhcCCCEEEEEecCHHH-hccCH--HHHHHhc--CCCCEEEECcc
Confidence 567788999999999999999988743 22100 1222222 24579999743
No 230
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=37.93 E-value=1.1e+02 Score=27.34 Aligned_cols=33 Identities=15% Similarity=0.247 Sum_probs=25.7
Q ss_pred CCCCCCCCHHHHHhc--CCEEEEeCCChHHHHHHHc
Q 024066 5 MGVPTKETPFEVAEA--SDVVITMLPSSSHVLDVYN 38 (273)
Q Consensus 5 ~Ga~~~~s~~e~~~~--advvi~~v~~~~av~~v~~ 38 (273)
.|.+...|+.|+.+. .|++++++|.... .+++.
T Consensus 53 ~G~~~y~sv~dlp~~~~~DlAvI~vPa~~v-~~al~ 87 (300)
T PLN00125 53 LGLPVFNTVAEAKAETKANASVIYVPPPFA-AAAIL 87 (300)
T ss_pred cCeeccCCHHHHhhccCCCEEEEecCHHHH-HHHHH
Confidence 377888999999876 7999999998644 44443
No 231
>COG4074 Mth H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=35.34 E-value=43 Score=28.67 Aligned_cols=63 Identities=22% Similarity=0.340 Sum_probs=39.0
Q ss_pred cCCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHH
Q 024066 4 DMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISA 71 (273)
Q Consensus 4 ~~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~ 71 (273)
+.|..+..+-+|+++++|.||+-+|...---+++. -+... .+.|.++-..-|+.-..-.++-+
T Consensus 124 d~g~~vttddreavedad~iitwlpkg~~qpdiik---kfidd--ipegaivthactipttkf~kife 186 (343)
T COG4074 124 DMGIVVTTDDREAVEDADMIITWLPKGGVQPDIIK---KFIDD--IPEGAIVTHACTIPTTKFKKIFE 186 (343)
T ss_pred HceeEEecCcHhhhcCCCeEEEeccCCCCCccHHH---HHHhc--CCCCceEeeecccchHHHHHHHH
Confidence 45777888889999999999999997642222221 11221 24666766666665544444433
No 232
>PF13591 MerR_2: MerR HTH family regulatory protein
Probab=34.19 E-value=1.7e+02 Score=20.59 Aligned_cols=69 Identities=12% Similarity=0.157 Sum_probs=49.2
Q ss_pred HHHHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHH
Q 024066 164 TLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQ 243 (273)
Q Consensus 164 ~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~g~~~~~~~~~~ 243 (273)
.+|+.+|++++.+.+.+..+. + .|.. ..+. +-|+ ......++.+..+-++.|++++-+..+.
T Consensus 5 e~~~~~~i~~~~l~~lve~Gl----i----~p~~-------~~~~--~~f~-~~~l~rl~~~~rL~~Dl~in~~gi~lil 66 (84)
T PF13591_consen 5 EFCEACGIEPEFLRELVEEGL----I----EPEG-------EEEE--WYFS-EEDLARLRRIRRLHRDLGINLEGIALIL 66 (84)
T ss_pred HHHHHHCcCHHHHHHHHHCCC----e----eecC-------CCCe--eeEC-HHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 589999999999888887652 1 1110 0111 1243 3456678889999999999999999999
Q ss_pred HHHHHHH
Q 024066 244 DIYAKLC 250 (273)
Q Consensus 244 ~~~~~a~ 250 (273)
+++++-.
T Consensus 67 ~LLd~i~ 73 (84)
T PF13591_consen 67 DLLDRIE 73 (84)
T ss_pred HHHHHHH
Confidence 9887653
No 233
>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=34.19 E-value=55 Score=28.58 Aligned_cols=206 Identities=16% Similarity=0.197 Sum_probs=111.0
Q ss_pred cccCCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhc
Q 024066 2 FSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEK 81 (273)
Q Consensus 2 l~~~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~ 81 (273)
+.+.|...+.+-.++.+.+|++++|+-. ..+.+|+.+....+ .++++++-.--..+-. .+.+.+..
T Consensus 44 ~~~~g~~~~~~n~~~~~~s~v~~~svKp-~~i~~vls~~~~~~-----~~~~iivS~aaG~tl~--~l~~~l~~------ 109 (267)
T KOG3124|consen 44 FEALGVKTVFTNLEVLQASDVVFLSVKP-QVIESVLSEIKPKV-----SKGKIIVSVAAGKTLS--SLESKLSP------ 109 (267)
T ss_pred hhcCCceeeechHHHHhhccceeEeecc-hhHHHHhhcCcccc-----ccceEEEEEeecccHH--HHHHhcCC------
Confidence 4567888887779999999999999985 57777876532221 3557777544333221 22233221
Q ss_pred cCCCCCceEEEecCC-CCHHHHhcCceEEEeecC---HHHHHHHHHHHHHhcCCeE--------EeCCcChHHHHHHHHH
Q 024066 82 KDSWENPVMLDAPVS-GGVLAAEAGTLTFMVGGS---EDAYQAAKPLFLSMGKNTI--------YCGGAGNGAAAKICNN 149 (273)
Q Consensus 82 ~g~~~g~~~ldapv~-G~~~~a~~g~l~~~vgG~---~~~~~~~~~~l~~~~~~i~--------~~G~~g~a~~~Kl~~n 149 (273)
..+. ..++ -.|.....|. +++.-|. .+..+.++.+|...|.... +.|=.|+|-+
T Consensus 110 -----~~rv--iRvmpNtp~~v~eg~-sv~~~g~~~~~~D~~l~~~ll~~vG~~~evpE~~iDavTgLsGSgPA------ 175 (267)
T KOG3124|consen 110 -----PTRV--IRVMPNTPSVVGEGA-SVYAIGCHATNEDLELVEELLSAVGLCEEVPEKCIDAVTGLSGSGPA------ 175 (267)
T ss_pred -----CCce--EEecCCChhhhhcCc-EEEeeCCCcchhhHHHHHHHHHhcCcceeCcHHhhhHHhhccCCcHH------
Confidence 0112 2333 4555666666 4555554 3566788999999887422 1222344332
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcC-Ccccc-cccCCCCCCcccCCCCCCCCCC-CcchhhHHHHHHHHH
Q 024066 150 LTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS-ARCWS-SDSYNPVPGVMEGVPASRNYGG-GFASKLMAKDLNLAL 226 (273)
Q Consensus 150 ~~~~~~~~~~~Ea~~la~~~Gl~~~~~~~~l~~~~-~~s~~-~~~~~~~~~~~~~~~~~~~~~~-~f~~~~~~KD~~~~~ 226 (273)
+.+..+-+++ .-+-+.|++.+.-++.-.++- |..-+ ... ..=|..+ .+.=.+| +.|+ +.+
T Consensus 176 -y~f~~ieaLa---dGgVkmGlPr~lA~~laaqtllGAakMVl~s-~qHP~~L----kd~V~SPgG~TI--------~gl 238 (267)
T KOG3124|consen 176 -YVFVAIEALA---DGGVKMGLPRQLAYRLAAQTLLGAAKMVLAS-GQHPAQL----KDDVCSPGGTTI--------YGL 238 (267)
T ss_pred -HHHHHHHHHh---ccccccCCCHHHHHHHHHHHHHhHHHHHHhc-cCCcHHH----hCCCCCCCcchH--------HHH
Confidence 2222222222 345678999887776655432 11101 000 0001111 1111234 2222 344
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHHHC
Q 024066 227 ASAKEVGVDCPLTSQAQDIYAKLCEN 252 (273)
Q Consensus 227 ~~a~~~g~~~~~~~~~~~~~~~a~~~ 252 (273)
...++-|++.-+++++.+--.++.+-
T Consensus 239 h~LE~ggfRs~linaVeaa~~r~~el 264 (267)
T KOG3124|consen 239 HALEKGGFRSGLINAVEAATKRAREL 264 (267)
T ss_pred HHHHhCCchhHHHHHHHHHHHHHHHh
Confidence 56777788888888887766666553
No 234
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=33.72 E-value=3.3e+02 Score=24.02 Aligned_cols=73 Identities=16% Similarity=0.196 Sum_probs=48.9
Q ss_pred eEEEEcCC-CCHHHHHHHHHHHhhchhhhccCCCCCceEEEecCCCCH-----HHHhcCceEEEeecCHHHHHHHHHHHH
Q 024066 53 QLLIDSST-IDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGV-----LAAEAGTLTFMVGGSEDAYQAAKPLFL 126 (273)
Q Consensus 53 ~iiid~ST-~~P~~~~~l~~~~~~~g~~~~~g~~~g~~~ldapv~G~~-----~~a~~g~l~~~vgG~~~~~~~~~~~l~ 126 (273)
.+.+|... -++++++++.+.+++. ++.|++-|+.... .-...-..++..+++--..+.++++++
T Consensus 179 ~l~vD~n~~~~~~~A~~~~~~l~~~----------~l~~iEeP~~~~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~ 248 (316)
T cd03319 179 RLRVDANQGWTPEEAVELLRELAEL----------GVELIEQPVPAGDDDGLAYLRDKSPLPIMADESCFSAADAARLAG 248 (316)
T ss_pred eEEEeCCCCcCHHHHHHHHHHHHhc----------CCCEEECCCCCCCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHh
Confidence 68888854 6688899999988753 4889999996431 112223456666666555667788888
Q ss_pred HhcCCeEEe
Q 024066 127 SMGKNTIYC 135 (273)
Q Consensus 127 ~~~~~i~~~ 135 (273)
.-+-+++.+
T Consensus 249 ~~~~d~v~~ 257 (316)
T cd03319 249 GGAYDGINI 257 (316)
T ss_pred cCCCCEEEE
Confidence 655555544
No 235
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=33.60 E-value=45 Score=24.00 Aligned_cols=31 Identities=26% Similarity=0.409 Sum_probs=22.1
Q ss_pred CCCCCCCHHHHHhc--CCEEEEeCCChHHHHHHH
Q 024066 6 GVPTKETPFEVAEA--SDVVITMLPSSSHVLDVY 37 (273)
Q Consensus 6 Ga~~~~s~~e~~~~--advvi~~v~~~~av~~v~ 37 (273)
|..+..+..|+.+. .|+.++|+|...+ +++.
T Consensus 47 gipV~~~~~~l~~~~~i~iaii~VP~~~a-~~~~ 79 (96)
T PF02629_consen 47 GIPVYGSMDELEEFIEIDIAIITVPAEAA-QEVA 79 (96)
T ss_dssp TEEEESSHHHHHHHCTTSEEEEES-HHHH-HHHH
T ss_pred CEEeeccHHHhhhhhCCCEEEEEcCHHHH-HHHH
Confidence 45556688888887 9999999997654 4444
No 236
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. In eukaryotes, transcription initiation of all protein encoding genes involves the polymerase II system. This sytem is modulated by both general and specific transcription factors. The general factors (which include TFIIA, TFIIB, TFIID, TFIIE, TFIIF, TFIIG and TFIIH) operate through common promoter elements, such as the TATA box. Transcription factor IIB (TFIIB) is of central importance in transcription of class II genes. It associates with TFIID-TFIIA bound to DNA (the DA complex) to form a ternary TFIID-IIA-IBB (DAB) complex, which is recognised by RNA polymerase II [, ]. TFIIB comprises ~315-340 residues and contains an imperfect C-terminal repeat of a 75-residue domain that may contribute to the symmetry of the folded protein. The basal archaeal transcription machinery resembles that of the eukaryotic polymerase II system and includes a homologue of TFIIB []. This entry represents a cyclin-like domain which is found repeated in the C-terminal region of a variety of eukaryotic TFIIB's and their archaeal counterparts. These domains individually form the typical cyclin fold, and in the transcription complex they straddle the C-terminal region of the TATA-binding protein - an interaction essential for the formation of the transcription initiation complex [, ].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2PHG_A 1C9B_Q 1TFB_A 1VOL_A 3K7A_M 1AIS_B 1D3U_B.
Probab=32.92 E-value=80 Score=21.16 Aligned_cols=29 Identities=24% Similarity=0.374 Sum_probs=23.1
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHHHCCC
Q 024066 226 LASAKEVGVDCPLTSQAQDIYAKLCENGH 254 (273)
Q Consensus 226 ~~~a~~~g~~~~~~~~~~~~~~~a~~~G~ 254 (273)
...+..+++|.++.+.+.++|+.+.+.+.
T Consensus 2 ~r~~~~L~L~~~v~~~A~~i~~~~~~~~~ 30 (71)
T PF00382_consen 2 PRICSKLGLPEDVRERAKEIYKKAQERGL 30 (71)
T ss_dssp HHHHHHTT--HHHHHHHHHHHHHHHHTTT
T ss_pred hHHHhHcCCCHHHHHHHHHHHHHHHHcCC
Confidence 35678889999999999999999988874
No 237
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=32.15 E-value=3.3e+02 Score=23.37 Aligned_cols=74 Identities=14% Similarity=0.108 Sum_probs=47.7
Q ss_pred CeEEEEcCC-CCHHHHHHHHHHHhhchhhhccCCCCCceEEEecCCCCH-HH----HhcCceEEEeecCHHHHHHHHHHH
Q 024066 52 PQLLIDSST-IDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGV-LA----AEAGTLTFMVGGSEDAYQAAKPLF 125 (273)
Q Consensus 52 g~iiid~ST-~~P~~~~~l~~~~~~~g~~~~~g~~~g~~~ldapv~G~~-~~----a~~g~l~~~vgG~~~~~~~~~~~l 125 (273)
-.+.+|.+. -+++++.++.+.+++. ++.|++-|+...- .. ...-..++..++.-.....+++++
T Consensus 130 ~~l~vDan~~~~~~~a~~~~~~l~~~----------~i~~iEeP~~~~d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i 199 (265)
T cd03315 130 AELRVDANRGWTPKQAIRALRALEDL----------GLDYVEQPLPADDLEGRAALARATDTPIMADESAFTPHDAFREL 199 (265)
T ss_pred CEEEEeCCCCcCHHHHHHHHHHHHhc----------CCCEEECCCCcccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHH
Confidence 368899876 4789999999998763 4889999987532 11 222234666666544556667776
Q ss_pred HHhcCCeEEe
Q 024066 126 LSMGKNTIYC 135 (273)
Q Consensus 126 ~~~~~~i~~~ 135 (273)
+.=+-+++.+
T Consensus 200 ~~~~~d~v~~ 209 (265)
T cd03315 200 ALGAADAVNI 209 (265)
T ss_pred HhCCCCEEEE
Confidence 6544444433
No 238
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=31.36 E-value=2.2e+02 Score=26.04 Aligned_cols=73 Identities=16% Similarity=0.131 Sum_probs=52.1
Q ss_pred CCCCCCHHHHHhcC--CEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhhchhhhccC
Q 024066 7 VPTKETPFEVAEAS--DVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNCILKEKKD 83 (273)
Q Consensus 7 a~~~~s~~e~~~~a--dvvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~-ST~~P~~~~~l~~~~~~~g~~~~~g 83 (273)
.++..|..|++++. |+|.+..|++...+=+.. ++.. +..++++- -+.+..+++++-+.++++
T Consensus 58 ~k~y~syEeLakd~~vDvVyi~~~~~qH~evv~l----~l~~----~K~VL~EKPla~n~~e~~~iveaA~~r------- 122 (351)
T KOG2741|consen 58 PKAYGSYEELAKDPEVDVVYISTPNPQHYEVVML----ALNK----GKHVLCEKPLAMNVAEAEEIVEAAEAR------- 122 (351)
T ss_pred CccccCHHHHhcCCCcCEEEeCCCCccHHHHHHH----HHHc----CCcEEecccccCCHHHHHHHHHHHHHc-------
Confidence 46778999999875 999999999988765543 3322 22466654 356778888999888764
Q ss_pred CCCCceEEEecCCC
Q 024066 84 SWENPVMLDAPVSG 97 (273)
Q Consensus 84 ~~~g~~~ldapv~G 97 (273)
|+.|.|+-..-
T Consensus 123 ---gv~~meg~~~R 133 (351)
T KOG2741|consen 123 ---GVFFMEGLWWR 133 (351)
T ss_pred ---CcEEEeeeeee
Confidence 37888876543
No 239
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=30.98 E-value=49 Score=24.84 Aligned_cols=52 Identities=12% Similarity=0.208 Sum_probs=28.2
Q ss_pred CCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCH
Q 024066 5 MGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDP 63 (273)
Q Consensus 5 ~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P 63 (273)
.|.+...|.+|.-...|++++|+|.. .+.+++.. +.+. --+.+|+..++.++
T Consensus 41 ~G~~~y~sl~e~p~~iDlavv~~~~~-~~~~~v~~---~~~~---g~~~v~~~~g~~~~ 92 (116)
T PF13380_consen 41 LGIKCYPSLAEIPEPIDLAVVCVPPD-KVPEIVDE---AAAL---GVKAVWLQPGAESE 92 (116)
T ss_dssp TTEE-BSSGGGCSST-SEEEE-S-HH-HHHHHHHH---HHHH---T-SEEEE-TTS--H
T ss_pred CcEEeeccccCCCCCCCEEEEEcCHH-HHHHHHHH---HHHc---CCCEEEEEcchHHH
Confidence 36677889988447899999999965 44555543 2211 12368888884443
No 240
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=30.86 E-value=4e+02 Score=24.05 Aligned_cols=53 Identities=15% Similarity=0.203 Sum_probs=37.4
Q ss_pred EEEeecCHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 024066 108 TFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTL 176 (273)
Q Consensus 108 ~~~vgG~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gl~~~~~ 176 (273)
+++.|-+.+-|+++-++...++..++-..... +..+.+....+.++|++++.+
T Consensus 154 pLInSat~en~~~i~~lA~~y~~~Vva~s~~D----------------ln~ak~L~~~l~~~Gi~~edI 206 (319)
T PRK04452 154 CLLGSAEEDNYKKIAAAAMAYGHAVIAWSPLD----------------INLAKQLNILLTELGVPRERI 206 (319)
T ss_pred CEEEECCHHHHHHHHHHHHHhCCeEEEEcHHH----------------HHHHHHHHHHHHHcCCCHHHE
Confidence 46777777779999999988988766554222 335556667777889987754
No 241
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=29.49 E-value=1.1e+02 Score=24.91 Aligned_cols=101 Identities=18% Similarity=0.113 Sum_probs=66.3
Q ss_pred EcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEEecC--CCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCC---
Q 024066 57 DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPV--SGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKN--- 131 (273)
Q Consensus 57 d~ST~~P~~~~~l~~~~~~~g~~~~~g~~~g~~~ldapv--~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~--- 131 (273)
-.++-.|+....+++.+.++ |...+|.-+ .|+. =.+.+.++|+.+.+++++..|..++++
T Consensus 10 avg~d~pgl~~~lar~v~s~----------Gcn~leSRla~~g~~-----~a~i~lisgs~dav~~le~~l~~l~~~~~L 74 (176)
T COG2716 10 AVGADRPGLVNTLARAVASS----------GCNWLESRLAMLGEE-----FAGIMLISGSWDAVTLLEATLPLLGAELDL 74 (176)
T ss_pred EecCCCcHHHHHHHHHHHhc----------CCcchHHHHHHhhcc-----eeEEEEEeeCHHHHHHHHHHhhcccccCCe
Confidence 46889999999999999875 256787664 3432 256899999999999999999999872
Q ss_pred ---eEEeCCcC-hHHH----HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 024066 132 ---TIYCGGAG-NGAA----AKICNNLTMAVSMLGVSEALTLGQSLGISASTL 176 (273)
Q Consensus 132 ---i~~~G~~g-~a~~----~Kl~~n~~~~~~~~~~~Ea~~la~~~Gl~~~~~ 176 (273)
+..-|+-. .++. +++..|- -.-.+.|...+-...|++.+.+
T Consensus 75 ~v~m~rt~~~~~~a~~~~v~v~v~a~D----rpgIv~~~T~lf~~~~inie~L 123 (176)
T COG2716 75 LVVMKRTGAHPTPANPAPVWVYVDAND----RPGIVEEFTALFDGHGINIENL 123 (176)
T ss_pred EEEEeecCCCccCCCCceEEEEEEecC----CccHHHHHHHHHHhcCCchhhc
Confidence 11222211 1111 1111111 1234567777888889988764
No 242
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=29.37 E-value=64 Score=28.81 Aligned_cols=63 Identities=19% Similarity=0.094 Sum_probs=45.1
Q ss_pred cccCCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 2 FSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 2 l~~~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
|.+.|++..+++.++-+++-|||..=.-+.++++-+. ..|-.|||.|--.....++..+.+.+
T Consensus 49 L~~~GV~~v~~~~~v~~~~~ViirAHGv~~~~~~~~~-----------~~g~~viDaTCP~V~k~~~~v~~~~~ 111 (298)
T PRK01045 49 LEKKGAIFVEELDEVPDGAIVIFSAHGVSPAVREEAK-----------ERGLTVIDATCPLVTKVHKEVARMSR 111 (298)
T ss_pred HHHCCCEEecCcccCCCCCEEEEeCCCCCHHHHHHHH-----------HCCCeEEeCCCccchHHHHHHHHHHh
Confidence 5677888888877765566677766666666665542 24467888888888888888887765
No 243
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=28.83 E-value=1.1e+02 Score=27.64 Aligned_cols=46 Identities=20% Similarity=0.265 Sum_probs=36.7
Q ss_pred ceEEEeecCHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHH
Q 024066 106 TLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLT 151 (273)
Q Consensus 106 ~l~~~vgG~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~ 151 (273)
.+++++||+.++-...+.-|+.+|-.+.+.|+.-.....+=+.+.+
T Consensus 77 d~VLIIGGp~AVs~~yE~~Lks~GitV~RigG~nR~ETa~~v~~~~ 122 (337)
T COG2247 77 DLVLIIGGPIAVSPNYENALKSLGITVKRIGGANRYETAEKVAKFF 122 (337)
T ss_pred ceEEEECCCCcCChhHHHHHHhCCcEEEEecCcchHHHHHHHHHHH
Confidence 5689999999998999999999999999998865555554444444
No 244
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=28.48 E-value=2.2e+02 Score=26.41 Aligned_cols=109 Identities=16% Similarity=0.141 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----cC--CCHHHHHHHHhhcC-CcccccccCCCCCCcccCCCCCCC--CCC
Q 024066 141 GAAAKICNNLTMAVSMLGVSEALTLGQS----LG--ISASTLTKILNSSS-ARCWSSDSYNPVPGVMEGVPASRN--YGG 211 (273)
Q Consensus 141 a~~~Kl~~n~~~~~~~~~~~Ea~~la~~----~G--l~~~~~~~~l~~~~-~~s~~~~~~~~~~~~~~~~~~~~~--~~~ 211 (273)
-+.++-+...+.+.-+...++.+.|.++ +| ++...+.-+.+.+. .+|-++.... ..+.++..-.+ +++
T Consensus 321 ~~~~dd~r~alYaskiiSyaQGfmLlr~aa~e~gW~ln~~~iAlmWrgGCIIRsvfL~~I~---~a~~~~p~l~nll~d~ 397 (487)
T KOG2653|consen 321 KQFLDDIRQALYASKIISYAQGFMLLREAAKEKGWKLNNGGIALMWRGGCIIRSVFLDRIK---KAYQRNPDLANLLLDP 397 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHcCCeEeeHHHHHHHH---HHHhcCccHhhhccCH
Confidence 3446777888888888888888877654 34 45555555555442 2222111110 01111100011 123
Q ss_pred Ccc--hhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHC
Q 024066 212 GFA--SKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCEN 252 (273)
Q Consensus 212 ~f~--~~~~~KD~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~ 252 (273)
-|. +.....+.+.++.++-+.|+|+|....++..|+--..+
T Consensus 398 fF~~~v~~~q~~wr~vV~~a~~~gIptP~~st~Lafydgyr~e 440 (487)
T KOG2653|consen 398 FFAKAVEEAQDSWRRVVALAVEAGIPTPAFSTALAFYDGYRSE 440 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhhhh
Confidence 343 45556788889999999999999999999988754443
No 245
>PRK06270 homoserine dehydrogenase; Provisional
Probab=27.67 E-value=4.6e+02 Score=23.67 Aligned_cols=51 Identities=25% Similarity=0.258 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 024066 117 AYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGI 171 (273)
Q Consensus 117 ~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gl 171 (273)
.++.++..+. +.++..+-.+=+|+.==+.+++... -..+.|++.-|++.|+
T Consensus 159 ii~~l~~~l~--g~~I~~I~GIlnGT~nyIl~~m~~~--g~~f~~al~~Aq~~G~ 209 (341)
T PRK06270 159 IINLAKETLA--GNDIKSIKGILNGTTNYILTRMEEE--GLSYEQALAEAQELGY 209 (341)
T ss_pred HHHHHHhhcc--cCceEEEEEEEeCcHHHHHHHHhhc--CCCHHHHHHHHHHcCC
Confidence 4455555533 4445555333233332223332121 2567888888888776
No 246
>COG1799 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.79 E-value=1e+02 Score=24.97 Aligned_cols=48 Identities=19% Similarity=0.339 Sum_probs=32.7
Q ss_pred cCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHh
Q 024066 19 ASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVS 74 (273)
Q Consensus 19 ~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~ 74 (273)
.+.+|++=-...+...++.. .+. .+..++||++-.+|.+++++-..++
T Consensus 73 ~s~iv~~ePr~yeda~~ia~----~lk----~~k~Vvinl~~m~~~qArRivDFla 120 (167)
T COG1799 73 SSKIVLLEPRKYEDAQEIAD----YLK----NRKAVVINLQRMDPAQARRIVDFLA 120 (167)
T ss_pred ceEEEEecCccHHHHHHHHH----HHh----cCceEEEEeeeCCHHHHHHHHHHhc
Confidence 34555555555555555542 343 2447999999999999999988764
No 247
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=26.73 E-value=76 Score=28.64 Aligned_cols=37 Identities=14% Similarity=0.048 Sum_probs=24.8
Q ss_pred HHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCC
Q 024066 16 VAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 61 (273)
Q Consensus 16 ~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~ 61 (273)
..+++|+||.|+|...+. ++.. .++ ..|.+|||+|..
T Consensus 60 ~~~~vDvVf~A~g~g~s~-~~~~---~~~-----~~G~~VIDlS~~ 96 (334)
T PRK14874 60 DFSGVDIALFSAGGSVSK-KYAP---KAA-----AAGAVVIDNSSA 96 (334)
T ss_pred HHcCCCEEEECCChHHHH-HHHH---HHH-----hCCCEEEECCch
Confidence 347899999999987554 3432 132 235689999864
No 248
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=26.69 E-value=1.2e+02 Score=32.01 Aligned_cols=56 Identities=20% Similarity=0.338 Sum_probs=34.8
Q ss_pred CCCHHHHH---hcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 10 KETPFEVA---EASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 10 ~~s~~e~~---~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
+.+..++. +++|+||+|+|..-... |... .++ .|+-+++.|.+ .+.++++.+.+++
T Consensus 636 v~D~e~L~~~v~~~DaVIsalP~~~H~~-VAka---Aie-----aGkHvv~eky~-~~e~~~L~e~Ak~ 694 (1042)
T PLN02819 636 VSDSESLLKYVSQVDVVISLLPASCHAV-VAKA---CIE-----LKKHLVTASYV-SEEMSALDSKAKE 694 (1042)
T ss_pred cCCHHHHHHhhcCCCEEEECCCchhhHH-HHHH---HHH-----cCCCEEECcCC-HHHHHHHHHHHHH
Confidence 44555544 57999999999975533 3321 222 34566777744 4556677777665
No 249
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=26.53 E-value=83 Score=28.77 Aligned_cols=18 Identities=28% Similarity=0.196 Sum_probs=10.9
Q ss_pred HHHHHhcCCEEEEeCCCh
Q 024066 13 PFEVAEASDVVITMLPSS 30 (273)
Q Consensus 13 ~~e~~~~advvi~~v~~~ 30 (273)
..++++++|+||.|++..
T Consensus 61 l~~~~~~~dvVin~~gp~ 78 (386)
T PF03435_consen 61 LAELLRGCDVVINCAGPF 78 (386)
T ss_dssp HHHHHTTSSEEEE-SSGG
T ss_pred HHHHHhcCCEEEECCccc
Confidence 455666777777777655
No 250
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=26.53 E-value=2.1e+02 Score=26.98 Aligned_cols=33 Identities=21% Similarity=0.458 Sum_probs=26.5
Q ss_pred CCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHc
Q 024066 5 MGVPTKETPFEVAEASDVVITMLPSSSHVLDVYN 38 (273)
Q Consensus 5 ~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~ 38 (273)
.|.....|++|+-...|++++|+|.. .+.+++.
T Consensus 50 ~G~~~~~sl~~lp~~~Dlavi~vp~~-~~~~~l~ 82 (447)
T TIGR02717 50 LGVKAYPSVLEIPDPVDLAVIVVPAK-YVPQVVE 82 (447)
T ss_pred CCccccCCHHHCCCCCCEEEEecCHH-HHHHHHH
Confidence 47788899999988899999999975 4455554
No 251
>PRK10846 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional
Probab=26.26 E-value=1.3e+02 Score=27.86 Aligned_cols=38 Identities=13% Similarity=0.212 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhcC-----CeEEe-CCcChHHHHHHHHHHHHH
Q 024066 116 DAYQAAKPLFLSMGK-----NTIYC-GGAGNGAAAKICNNLTMA 153 (273)
Q Consensus 116 ~~~~~~~~~l~~~~~-----~i~~~-G~~g~a~~~Kl~~n~~~~ 153 (273)
-.+++++.+|+.+|. +++|+ |..|.++...++.+++..
T Consensus 30 ~~l~~~~~ll~~lg~p~~~~~~I~VtGTNGKgSt~~~l~~iL~~ 73 (416)
T PRK10846 30 LGLERVSQVAARLDLLKPAPFVFTVAGTNGKGTTCRTLESILMA 73 (416)
T ss_pred CChHHHHHHHHHhCCCccCCCEEEEECCCChHHHHHHHHHHHHH
Confidence 347899999999982 36666 679999999999988853
No 252
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=25.59 E-value=1.3e+02 Score=17.00 Aligned_cols=21 Identities=19% Similarity=0.376 Sum_probs=15.1
Q ss_pred HHHHHHHHcCCCHHHHHHHHh
Q 024066 161 EALTLGQSLGISASTLTKILN 181 (273)
Q Consensus 161 Ea~~la~~~Gl~~~~~~~~l~ 181 (273)
+.+.-|...|++.+++.+.+.
T Consensus 7 ~Li~eA~~~Gls~eeir~FL~ 27 (30)
T PF08671_consen 7 ELIKEAKESGLSKEEIREFLE 27 (30)
T ss_dssp HHHHHHHHTT--HHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHH
Confidence 456678899999999988775
No 253
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=25.49 E-value=5.1e+02 Score=23.42 Aligned_cols=66 Identities=11% Similarity=0.021 Sum_probs=41.2
Q ss_pred CeEEEEcCC-CCHHHHHHHHHHHhhchhhhccCCCCCceEEEecCCCCH-----HHHhcCceEEEeecCHHHHHHHHHHH
Q 024066 52 PQLLIDSST-IDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGV-----LAAEAGTLTFMVGGSEDAYQAAKPLF 125 (273)
Q Consensus 52 g~iiid~ST-~~P~~~~~l~~~~~~~g~~~~~g~~~g~~~ldapv~G~~-----~~a~~g~l~~~vgG~~~~~~~~~~~l 125 (273)
-.+.||.+. -+++++.++.+.+++. ++.|++-|+.-.. .-..+-..++.++..-.....+++++
T Consensus 187 ~~l~vDaN~~~~~~~A~~~~~~l~~~----------~i~~iEeP~~~~d~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i 256 (355)
T cd03321 187 VGLMVDYNQSLTVPEAIERGQALDQE----------GLTWIEEPTLQHDYEGHARIASALRTPVQMGENWLGPEEMFKAL 256 (355)
T ss_pred CEEEEeCCCCcCHHHHHHHHHHHHcC----------CCCEEECCCCCcCHHHHHHHHHhcCCCEEEcCCCcCHHHHHHHH
Confidence 368899876 6788899999988753 4889999996432 11222234555444333345556665
Q ss_pred HH
Q 024066 126 LS 127 (273)
Q Consensus 126 ~~ 127 (273)
+.
T Consensus 257 ~~ 258 (355)
T cd03321 257 SA 258 (355)
T ss_pred Hh
Confidence 54
No 254
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=25.34 E-value=2.3e+02 Score=24.99 Aligned_cols=62 Identities=13% Similarity=0.170 Sum_probs=41.3
Q ss_pred CC-CCCCCHHHHHhc--CCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhh
Q 024066 6 GV-PTKETPFEVAEA--SDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSN 75 (273)
Q Consensus 6 Ga-~~~~s~~e~~~~--advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~-ST~~P~~~~~l~~~~~~ 75 (273)
|. ...+|..+++++ .|+|++|+|++...+-+.. .+.+ +..++++- =+.+++++++|.+..++
T Consensus 51 ~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H~e~~~~----AL~a----GkhVl~EKPla~t~~ea~~l~~~a~~ 116 (342)
T COG0673 51 GIAKAYTDLEELLADPDIDAVYIATPNALHAELALA----ALEA----GKHVLCEKPLALTLEEAEELVELARK 116 (342)
T ss_pred CCCcccCCHHHHhcCCCCCEEEEcCCChhhHHHHHH----HHhc----CCEEEEcCCCCCCHHHHHHHHHHHHH
Confidence 44 467888998876 5899999999877665543 2221 22466653 25667777788877765
No 255
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=25.09 E-value=3.6e+02 Score=24.36 Aligned_cols=66 Identities=12% Similarity=0.130 Sum_probs=41.0
Q ss_pred CeEEEEcCC-CCHHHHHHHHHHHhhchhhhccCCCCCceEEEecCCCCH-----HHHhcCceEEEeecCHHHHHHHHHHH
Q 024066 52 PQLLIDSST-IDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGV-----LAAEAGTLTFMVGGSEDAYQAAKPLF 125 (273)
Q Consensus 52 g~iiid~ST-~~P~~~~~l~~~~~~~g~~~~~g~~~g~~~ldapv~G~~-----~~a~~g~l~~~vgG~~~~~~~~~~~l 125 (273)
-.+.||.+. -+++++.++.+.+++. ++.|++-|+.-.- .-.....+++..+-+--....+++++
T Consensus 177 ~~l~vDaN~~~~~~~A~~~~~~l~~~----------~i~~iEeP~~~~d~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~ 246 (352)
T cd03325 177 IDIGVDFHGRVSKPMAKDLAKELEPY----------RLLFIEEPVLPENVEALAEIAARTTIPIATGERLFSRWDFKELL 246 (352)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccc----------CCcEEECCCCccCHHHHHHHHHhCCCCEEecccccCHHHHHHHH
Confidence 368999976 6789999999988653 4899999995321 11222233444433223455666666
Q ss_pred HH
Q 024066 126 LS 127 (273)
Q Consensus 126 ~~ 127 (273)
+.
T Consensus 247 ~~ 248 (352)
T cd03325 247 ED 248 (352)
T ss_pred Hh
Confidence 53
No 256
>PRK06046 alanine dehydrogenase; Validated
Probab=25.03 E-value=61 Score=29.13 Aligned_cols=54 Identities=15% Similarity=0.227 Sum_probs=35.2
Q ss_pred CCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHH
Q 024066 8 PTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAV 73 (273)
Q Consensus 8 ~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~ 73 (273)
..++++.++++ +|+|++|.|+... ++.. ..+ ++|..|.-.++..|. .+|+...+
T Consensus 183 ~~~~~~~~~l~-aDiVv~aTps~~P---~~~~--~~l-----~~g~hV~~iGs~~p~-~~El~~~~ 236 (326)
T PRK06046 183 TVAEDIEEACD-CDILVTTTPSRKP---VVKA--EWI-----KEGTHINAIGADAPG-KQELDPEI 236 (326)
T ss_pred EEeCCHHHHhh-CCEEEEecCCCCc---EecH--HHc-----CCCCEEEecCCCCCc-cccCCHHH
Confidence 44778999887 9999999998642 3321 111 356677777777774 34555443
No 257
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=25.03 E-value=73 Score=28.93 Aligned_cols=37 Identities=8% Similarity=-0.119 Sum_probs=24.8
Q ss_pred HhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCC
Q 024066 17 AEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 62 (273)
Q Consensus 17 ~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~ 62 (273)
.+++|+||+|+|...+ .++... +. ..|..+||.|...
T Consensus 64 ~~~vD~vFla~p~~~s-~~~v~~---~~-----~~G~~VIDlS~~f 100 (336)
T PRK05671 64 FSQVQLAFFAAGAAVS-RSFAEK---AR-----AAGCSVIDLSGAL 100 (336)
T ss_pred hcCCCEEEEcCCHHHH-HHHHHH---HH-----HCCCeEEECchhh
Confidence 4789999999997533 444321 22 2457899998654
No 258
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=24.83 E-value=46 Score=29.93 Aligned_cols=22 Identities=23% Similarity=0.474 Sum_probs=18.0
Q ss_pred CCCHHHHHhcCCEEEEeCCChH
Q 024066 10 KETPFEVAEASDVVITMLPSSS 31 (273)
Q Consensus 10 ~~s~~e~~~~advvi~~v~~~~ 31 (273)
.+++.+++++||+|++|.|...
T Consensus 185 ~~~~~~av~~aDiVvtaT~s~~ 206 (326)
T TIGR02992 185 ATDPRAAMSGADIIVTTTPSET 206 (326)
T ss_pred eCCHHHHhccCCEEEEecCCCC
Confidence 5778888889999999988754
No 259
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=24.80 E-value=61 Score=29.44 Aligned_cols=35 Identities=14% Similarity=0.088 Sum_probs=23.8
Q ss_pred hcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCC
Q 024066 18 EASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 61 (273)
Q Consensus 18 ~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~ 61 (273)
.++|++|+|+|+..+ .++... +. ..|..|||+|..
T Consensus 65 ~~~Dvvf~a~p~~~s-~~~~~~---~~-----~~g~~VIDlS~~ 99 (336)
T PRK08040 65 SQAQLAFFVAGREAS-AAYAEE---AT-----NAGCLVIDSSGL 99 (336)
T ss_pred cCCCEEEECCCHHHH-HHHHHH---HH-----HCCCEEEECChH
Confidence 689999999998754 334321 22 246789999853
No 260
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=24.59 E-value=92 Score=29.77 Aligned_cols=63 Identities=17% Similarity=0.232 Sum_probs=39.2
Q ss_pred HHHHHHHHHhcCCeEEeCC-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---------HHHHHHHHhhc
Q 024066 119 QAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGIS---------ASTLTKILNSS 183 (273)
Q Consensus 119 ~~~~~~l~~~~~~i~~~G~-~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gl~---------~~~~~~~l~~~ 183 (273)
+.++.+. ..|...+.+|- +|+-........ +-......+.|+...++++|++ +.++...|..+
T Consensus 278 ~~~~~l~-~~G~d~i~vg~g~Gs~~ttr~~~~-~g~~~~~a~~~~~~~~~~~~~~viadGgi~~~~di~kala~G 350 (475)
T TIGR01303 278 EGVRDLL-EAGANIIKVGVGPGAMCTTRMMTG-VGRPQFSAVLECAAEARKLGGHVWADGGVRHPRDVALALAAG 350 (475)
T ss_pred HHHHHHH-HhCCCEEEECCcCCccccCccccC-CCCchHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcC
Confidence 4445444 36777787775 776665442222 2334577888888888887764 45677777654
No 261
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=24.33 E-value=56 Score=29.88 Aligned_cols=38 Identities=13% Similarity=0.103 Sum_probs=25.3
Q ss_pred HHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCC
Q 024066 16 VAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 62 (273)
Q Consensus 16 ~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~ 62 (273)
...++|++|.|+|+..+ +++... +. ..|..|||.|...
T Consensus 65 ~~~~~Divf~a~~~~~s-~~~~~~---~~-----~~G~~VID~Ss~f 102 (347)
T PRK06728 65 SFEGVDIAFFSAGGEVS-RQFVNQ---AV-----SSGAIVIDNTSEY 102 (347)
T ss_pred HhcCCCEEEECCChHHH-HHHHHH---HH-----HCCCEEEECchhh
Confidence 34789999999998744 444421 21 2457899988643
No 262
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=24.24 E-value=3e+02 Score=25.01 Aligned_cols=74 Identities=9% Similarity=0.104 Sum_probs=47.3
Q ss_pred CeEEEEcCC-CCHHHHHHHHHHHhhchhhhccCCCCCceEEEecCCCCH-----HHHhcCceEEEeecCHHHHHHHHHHH
Q 024066 52 PQLLIDSST-IDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGV-----LAAEAGTLTFMVGGSEDAYQAAKPLF 125 (273)
Q Consensus 52 g~iiid~ST-~~P~~~~~l~~~~~~~g~~~~~g~~~g~~~ldapv~G~~-----~~a~~g~l~~~vgG~~~~~~~~~~~l 125 (273)
-++.||.+. -+++++.++.+.+++. ++.|++-|+.-.- .-.....+++..+-.-..+..++.++
T Consensus 188 ~~l~~DaN~~~~~~~A~~~~~~l~~~----------~~~~iEeP~~~~d~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~ 257 (368)
T TIGR02534 188 ASVRVDVNAAWDERTALHYLPQLADA----------GVELIEQPTPAENREALARLTRRFNVPIMADESVTGPADALAIA 257 (368)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhc----------ChhheECCCCcccHHHHHHHHHhCCCCEEeCcccCCHHHHHHHH
Confidence 368899865 7889999999998763 3789999995331 11222334555544434556677777
Q ss_pred HHhcCCeEEe
Q 024066 126 LSMGKNTIYC 135 (273)
Q Consensus 126 ~~~~~~i~~~ 135 (273)
+.-+.+++-+
T Consensus 258 ~~~~~d~~~~ 267 (368)
T TIGR02534 258 KASAADVFAL 267 (368)
T ss_pred HhCCCCEEEE
Confidence 7655554433
No 263
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=23.94 E-value=64 Score=30.78 Aligned_cols=43 Identities=16% Similarity=0.301 Sum_probs=28.7
Q ss_pred HhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 17 AEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 17 ~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
+.++|+||.|+|.+..+.. .+ . .+++|+++..++|. +.+.+++
T Consensus 388 l~~~DiVInatP~g~~~~~-------~l------~-~~v~D~~Y~P~~T~--ll~~A~~ 430 (477)
T PRK09310 388 LHRIDIIINCLPPSVTIPK-------AF------P-PCVVDINTLPKHSP--YTQYARS 430 (477)
T ss_pred cCCCCEEEEcCCCCCcchh-------HH------h-hhEEeccCCCCCCH--HHHHHHH
Confidence 4578999999998753211 11 2 38899999888765 5555554
No 264
>PF08765 Mor: Mor transcription activator family; InterPro: IPR014875 Mor (Middle operon regulator) is a sequence specific DNA binding protein. It mediates transcription activation through its interactions with the C-terminal domains of the alpha and sigma subunits of bacterial RNA polymerase. The N-terminal region of Mor is the dimerisation region, and the C-terminal contains a helix-turn-helix motif which binds DNA []. ; PDB: 1RR7_A.
Probab=23.39 E-value=3.1e+02 Score=20.17 Aligned_cols=62 Identities=18% Similarity=0.248 Sum_probs=32.6
Q ss_pred HHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 024066 119 QAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSS 183 (273)
Q Consensus 119 ~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gl~~~~~~~~l~~~ 183 (273)
+.+..+.+.+|...+|+ |-+..... ...|.-+.--..+.+ .-.||+++|++...+..++...
T Consensus 35 ~~~~~L~~~~gG~~iyi-P~~~~~~~-~~R~~~I~~~f~G~n-~~eLA~kyglS~r~I~~Ii~~~ 96 (108)
T PF08765_consen 35 EVALKLCRYFGGQQIYI-PKCDRLLR-ALRNREIRREFNGMN-VRELARKYGLSERQIYRIIKRV 96 (108)
T ss_dssp HHHHHHHHHH-SS-------SHHHHH-HHHHHHHHHH--SS--HHHHHHHHT--HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCEeEEe-eCccHHHH-HHHHHHHHHHhCCCC-HHHHHHHHCcCHHHHHHHHHHH
Confidence 45677888898888887 43332222 233433333333333 5789999999999999999864
No 265
>PF12637 TSCPD: TSCPD domain; InterPro: IPR024434 The domain is found in isolation in many proteins where it has a conserved C-terminal motif TSCPD, after which the domain is named. Most copies of the domain possess 4 conserved cysteines that may be part of an Iron-sulphur cluster. This domain is found at the C terminus of some ribonucleoside-diphosphate reductase enzymes.
Probab=23.02 E-value=1.6e+02 Score=21.27 Aligned_cols=31 Identities=10% Similarity=0.221 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHhhcC
Q 024066 154 VSMLGVSEALTLGQSLGISASTLTKILNSSS 184 (273)
Q Consensus 154 ~~~~~~~Ea~~la~~~Gl~~~~~~~~l~~~~ 184 (273)
+++.+++-.+.++-++|++++++.+-|....
T Consensus 38 ~~~~ai~rliS~~Lr~G~~~~~ii~~L~gi~ 68 (95)
T PF12637_consen 38 GNLEAIARLISLALRSGVPPEEIIDQLRGIR 68 (95)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHhcCCC
Confidence 4467778888899999999999999997653
No 266
>PF11113 Phage_head_chap: Head assembly gene product; InterPro: IPR021049 This head assembly protein is also refereed to as gene product 40 (Gp40). A specific gp20-gp40 membrane insertion structure constitutes the T4 prohead assembly initiation complex [].
Probab=22.90 E-value=97 Score=20.27 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=21.4
Q ss_pred CCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 51 RPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 51 ~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
.|++.+|.||-+++...+++..+.+
T Consensus 26 ~G~l~vdfsT~~e~~k~el~phVe~ 50 (56)
T PF11113_consen 26 DGKLKVDFSTPSEDRKEELAPHVEK 50 (56)
T ss_pred CCeEEEEEeCCCcchhhHHHHHHHH
Confidence 5789999999999988888877654
No 267
>KOG3007 consensus Mu-crystallin [Amino acid transport and metabolism]
Probab=22.86 E-value=77 Score=28.03 Aligned_cols=66 Identities=14% Similarity=0.071 Sum_probs=47.2
Q ss_pred CCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCC
Q 024066 7 VPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWE 86 (273)
Q Consensus 7 a~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~~ 86 (273)
+..+.+..+++..+|+|+.|.+.-+ -++++. .+ .+| +.||.=-..-..++|+-..+-+.
T Consensus 195 ~~~~qsl~~aV~~sDIIs~atlste---Pilfge--wl-----kpg-thIdlVGsf~p~mhEcDdelIq~---------- 253 (333)
T KOG3007|consen 195 LNQYQSLNGAVSNSDIISGATLSTE---PILFGE--WL-----KPG-THIDLVGSFKPVMHECDDELIQS---------- 253 (333)
T ss_pred EEehhhhhcccccCceEEeccccCC---ceeeee--ee-----cCC-ceEeeeccCCchHHHHhHHHhhh----------
Confidence 3557788999999999999998753 345542 22 244 78888777777788888887653
Q ss_pred CceEEEe
Q 024066 87 NPVMLDA 93 (273)
Q Consensus 87 g~~~lda 93 (273)
+..|||.
T Consensus 254 a~vfVDs 260 (333)
T KOG3007|consen 254 ACVFVDS 260 (333)
T ss_pred heEEEec
Confidence 2679986
No 268
>COG0285 FolC Folylpolyglutamate synthase [Coenzyme metabolism]
Probab=22.72 E-value=1.4e+02 Score=28.21 Aligned_cols=35 Identities=17% Similarity=0.357 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhcCC-----eEEeCC-cChHHHHHHHHHHHH
Q 024066 118 YQAAKPLFLSMGKN-----TIYCGG-AGNGAAAKICNNLTM 152 (273)
Q Consensus 118 ~~~~~~~l~~~~~~-----i~~~G~-~g~a~~~Kl~~n~~~ 152 (273)
++|++.+++.+|.. ++||++ .|.|+...++..++.
T Consensus 27 L~Ri~~ll~~LGnP~~~~~vIhVaGTNGKGSt~afl~siL~ 67 (427)
T COG0285 27 LERISRLLERLGNPQKSPPVIHVAGTNGKGSTCAFLESILR 67 (427)
T ss_pred hHHHHHHHHHcCCccccCCeEEEeCCCCchhHHHHHHHHHH
Confidence 68999999999864 788855 999999988887765
No 269
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=22.69 E-value=1.2e+02 Score=26.92 Aligned_cols=63 Identities=21% Similarity=0.140 Sum_probs=45.8
Q ss_pred cccCCCCCC--CCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 2 FSDMGVPTK--ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 2 l~~~Ga~~~--~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
|.+.|++.. +++.++-+++-|||..=.-+..+++-+. ..|-.|||.|--.....++.++.+.+
T Consensus 50 L~~~Gv~~v~~~~~~~v~~~~~ViirAHGv~~~~~~~~~-----------~~g~~viDaTCP~V~k~~~~v~~~~~ 114 (281)
T PRK12360 50 LEEKGVKTIEESEIDSLKEGDVVIIRSHGVSKKVYKDLK-----------DKGLEIIDATCPFVKKIQNIVEEYYN 114 (281)
T ss_pred HHHCcCEEECcCchhhCCCCCEEEEeCCCCCHHHHHHHH-----------HCCCeEEeCCCccchHHHHHHHHHHh
Confidence 567888888 8877765555666666666666665543 23467899999999999988888765
No 270
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=22.25 E-value=1.2e+02 Score=29.21 Aligned_cols=57 Identities=18% Similarity=0.270 Sum_probs=32.8
Q ss_pred ccCCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 3 SDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 3 ~~~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
.++||++.++. |+. +||+|+- |..|.. +++- .+ ++|+++|-. .+|....++.+.+.+
T Consensus 51 ~~aGA~I~~~~-~v~-~~diilk-V~~P~~-~e~~-----~l-----~~g~~li~~--l~p~~~~~l~~~l~~ 107 (509)
T PRK09424 51 REAGAEIVDGA-AVW-QSDIILK-VNAPSD-DEIA-----LL-----REGATLVSF--IWPAQNPELLEKLAA 107 (509)
T ss_pred HHCCCEEecCc-ccc-cCCEEEE-eCCCCH-HHHH-----hc-----CCCCEEEEE--eCcccCHHHHHHHHH
Confidence 46799998775 777 7998864 433322 2221 11 345666544 445555666666655
No 271
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=22.04 E-value=5e+02 Score=23.56 Aligned_cols=71 Identities=10% Similarity=0.137 Sum_probs=43.9
Q ss_pred eEEEEcCC-CCHHHHHHHHHHHhhchhhhccCCCCCceEEEecCCCCH-----HHHhcCceEEEeecCHHH-HHHHHHHH
Q 024066 53 QLLIDSST-IDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGV-----LAAEAGTLTFMVGGSEDA-YQAAKPLF 125 (273)
Q Consensus 53 ~iiid~ST-~~P~~~~~l~~~~~~~g~~~~~g~~~g~~~ldapv~G~~-----~~a~~g~l~~~vgG~~~~-~~~~~~~l 125 (273)
.+.||.+. -+++++.++++.+++. ++.|++-|+.-.. .-...-..++..|..--. .+.+++++
T Consensus 191 ~l~vDan~~~~~~~A~~~~~~l~~~----------~l~~iEeP~~~~d~~~~~~l~~~~~ipIa~~E~~~~~~~~~~~~i 260 (368)
T cd03329 191 RLMHDGAHWYSRADALRLGRALEEL----------GFFWYEDPLREASISSYRWLAEKLDIPILGTEHSRGALESRADWV 260 (368)
T ss_pred eEEEECCCCcCHHHHHHHHHHhhhc----------CCCeEeCCCCchhHHHHHHHHhcCCCCEEccCcccCcHHHHHHHH
Confidence 68899865 7889999999988753 3789999996432 112222345544433233 56677777
Q ss_pred HHhcCCeE
Q 024066 126 LSMGKNTI 133 (273)
Q Consensus 126 ~~~~~~i~ 133 (273)
+.=+-+++
T Consensus 261 ~~~a~d~v 268 (368)
T cd03329 261 LAGATDFL 268 (368)
T ss_pred HhCCCCEE
Confidence 66333333
No 272
>COG4451 RbcS Ribulose bisphosphate carboxylase small subunit [Energy production and conversion]
Probab=21.98 E-value=1.9e+02 Score=22.17 Aligned_cols=75 Identities=16% Similarity=0.055 Sum_probs=43.9
Q ss_pred EEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEEecCCCCHHHHhcCceEEEeecC--HHHHHHHHHHHHHhcCCeE
Q 024066 56 IDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGS--EDAYQAAKPLFLSMGKNTI 133 (273)
Q Consensus 56 id~ST~~P~~~~~l~~~~~~~g~~~~~g~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~--~~~~~~~~~~l~~~~~~i~ 133 (273)
=-.|+..|-+..++++.+.-. | ..|+..|+.|+|.|=.-.-..--=|+ + |+|+. .+++..++..+.......+
T Consensus 11 ~~~s~lp~Ltd~qi~~QVryl-L--~QGykigvE~~d~rrprtgsWt~wg~-p-~f~~~~~~evlaele~Cr~dhp~eYI 85 (127)
T COG4451 11 KTLSSLPPLTDEQIAEQVRYL-L--SQGYKIGVEYVDDRRPRTGSWTMWGT-P-MFGAKTAGEVLAELEACRADHPGEYI 85 (127)
T ss_pred cceecCCcCcHHHHHHHHHHH-H--hCCcccceeecccCCcccceeeecCC-c-cccccchHHHHHHHHHHHHhCCCCeE
Confidence 335566665556666665442 1 24788889999999643322221111 2 33443 3678888888888776644
Q ss_pred Ee
Q 024066 134 YC 135 (273)
Q Consensus 134 ~~ 135 (273)
++
T Consensus 86 Rl 87 (127)
T COG4451 86 RL 87 (127)
T ss_pred EE
Confidence 43
No 273
>PF06434 Aconitase_2_N: Aconitate hydratase 2 N-terminus; InterPro: IPR015929 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal region of bacterial aconitase B (AcnB), which consists of both a HEAT-like domain and a 'swivel' domain. HEAT-like domains are usually implicated in protein-protein interactions, while the 'swivel' domain is usually a mobile unit in proteins that carry it. In AcnB, this N-terminal region was shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=21.95 E-value=42 Score=27.88 Aligned_cols=36 Identities=19% Similarity=0.330 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhcCCeEEeCC-cChHHHHHHHHHHHHHH
Q 024066 118 YQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAV 154 (273)
Q Consensus 118 ~~~~~~~l~~~~~~i~~~G~-~g~a~~~Kl~~n~~~~~ 154 (273)
.++++. |+.-+..+.|+|+ +|.|+.-|-+.|.+++.
T Consensus 43 l~~i~~-lk~kg~~la~vGdvvGtGSSRKSa~NSvlW~ 79 (204)
T PF06434_consen 43 LEQIEE-LKEKGHPLAYVGDVVGTGSSRKSATNSVLWH 79 (204)
T ss_dssp HHHHHH-HHTTSS-EEEEEEEEEES---THHHHHHHHH
T ss_pred HHHHHH-HHHcCCcEEEecCccccCcccchhhhhhhhh
Confidence 344443 3466777999999 89999999998887654
No 274
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=21.93 E-value=7.1e+02 Score=23.89 Aligned_cols=102 Identities=10% Similarity=-0.037 Sum_probs=58.2
Q ss_pred CCCHHHHHHHHHHHhhchhhhccCCCCCceEEEecCCCCHH-HH----------hcCceEEEeecCHHHHHHHHHHHHHh
Q 024066 60 TIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVL-AA----------EAGTLTFMVGGSEDAYQAAKPLFLSM 128 (273)
Q Consensus 60 T~~P~~~~~l~~~~~~~g~~~~~g~~~g~~~ldapv~G~~~-~a----------~~g~l~~~vgG~~~~~~~~~~~l~~~ 128 (273)
+.++++..++++.+.+. |+.++++...+.++ .. ..-++..++-..++.+++....+...
T Consensus 19 ~~s~e~K~~ia~~L~~~----------GV~~IEvG~p~~s~~d~e~v~~i~~~~~~~~i~al~r~~~~did~a~~al~~~ 88 (494)
T TIGR00973 19 SLTVEEKLQIALALERL----------GVDIIEAGFPVSSPGDFEAVQRIARTVKNPRVCGLARCVEKDIDAAAEALKPA 88 (494)
T ss_pred CcCHHHHHHHHHHHHHc----------CCCEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEcCCCHHhHHHHHHhcccc
Confidence 47889999999998764 38899865433321 11 11133444444556665555444433
Q ss_pred cCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 024066 129 GKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGI 171 (273)
Q Consensus 129 ~~~i~~~G~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gl 171 (273)
+...+++--+.+-..++-..|.-..-.+..+.|+..++++.|.
T Consensus 89 ~~~~v~i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~ 131 (494)
T TIGR00973 89 EKFRIHTFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTD 131 (494)
T ss_pred CCCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC
Confidence 4444444333333333333344455556778888889988775
No 275
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=21.68 E-value=1.2e+02 Score=29.05 Aligned_cols=49 Identities=14% Similarity=0.126 Sum_probs=31.9
Q ss_pred CCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCH
Q 024066 6 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDP 63 (273)
Q Consensus 6 Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P 63 (273)
|++. .+..++++.+|+|++|..+...+.. ..++.+ +++.++||.+-...
T Consensus 297 G~~~-~~leell~~ADIVI~atGt~~iI~~------e~~~~M--KpGAiLINvGr~d~ 345 (476)
T PTZ00075 297 GYQV-VTLEDVVETADIFVTATGNKDIITL------EHMRRM--KNNAIVGNIGHFDN 345 (476)
T ss_pred Ccee-ccHHHHHhcCCEEEECCCcccccCH------HHHhcc--CCCcEEEEcCCCch
Confidence 5543 3678899999999999765443321 122222 45679999988853
No 276
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=21.52 E-value=99 Score=28.05 Aligned_cols=38 Identities=16% Similarity=0.073 Sum_probs=25.3
Q ss_pred HHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCC
Q 024066 15 EVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 61 (273)
Q Consensus 15 e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~ 61 (273)
+...++|+||.|++.....+ ... .++ ..|.+|||+|..
T Consensus 57 ~~~~~~D~v~~a~g~~~s~~-~a~---~~~-----~~G~~VID~ss~ 94 (339)
T TIGR01296 57 ESFEGIDIALFSAGGSVSKE-FAP---KAA-----KCGAIVIDNTSA 94 (339)
T ss_pred HHhcCCCEEEECCCHHHHHH-HHH---HHH-----HCCCEEEECCHH
Confidence 34578999999999875544 332 122 235689998863
No 277
>PLN02913 dihydrofolate synthetase
Probab=21.45 E-value=1.8e+02 Score=28.05 Aligned_cols=37 Identities=22% Similarity=0.382 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhcC-----CeEEe-CCcChHHHHHHHHHHHHH
Q 024066 117 AYQAAKPLFLSMGK-----NTIYC-GGAGNGAAAKICNNLTMA 153 (273)
Q Consensus 117 ~~~~~~~~l~~~~~-----~i~~~-G~~g~a~~~Kl~~n~~~~ 153 (273)
.+++++.+|+.||. +++|| |..|.|+...++.+++..
T Consensus 57 gL~r~~~ll~~LG~P~~~~~vIhVaGTNGKGSt~a~l~~iL~~ 99 (510)
T PLN02913 57 DLGRMRRLMDRLGNPHSKFKAVHVAGTKGKGSTAAFLSNILRA 99 (510)
T ss_pred CHHHHHHHHHHcCCchhhCcEEEEeCCCchHHHHHHHHHHHHh
Confidence 47899999999874 36777 669999999999998864
No 278
>PRK14017 galactonate dehydratase; Provisional
Probab=21.22 E-value=3.4e+02 Score=24.84 Aligned_cols=65 Identities=11% Similarity=0.151 Sum_probs=42.0
Q ss_pred eEEEEcCC-CCHHHHHHHHHHHhhchhhhccCCCCCceEEEecCCCC-----HHHHhcCceEEEeecCHHHHHHHHHHHH
Q 024066 53 QLLIDSST-IDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGG-----VLAAEAGTLTFMVGGSEDAYQAAKPLFL 126 (273)
Q Consensus 53 ~iiid~ST-~~P~~~~~l~~~~~~~g~~~~~g~~~g~~~ldapv~G~-----~~~a~~g~l~~~vgG~~~~~~~~~~~l~ 126 (273)
.+.||.+. -+++++.++.+.+++. ++.|++-|+.-. ..-......+|..+-+--.+..++++++
T Consensus 179 ~l~vDaN~~w~~~~A~~~~~~l~~~----------~~~~iEeP~~~~d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~ 248 (382)
T PRK14017 179 GIGVDFHGRVHKPMAKVLAKELEPY----------RPMFIEEPVLPENAEALPEIAAQTSIPIATGERLFSRWDFKRVLE 248 (382)
T ss_pred eEEEECCCCCCHHHHHHHHHhhccc----------CCCeEECCCCcCCHHHHHHHHhcCCCCEEeCCccCCHHHHHHHHH
Confidence 69999987 6788999999988753 488999998532 1222223344443333334566677766
Q ss_pred H
Q 024066 127 S 127 (273)
Q Consensus 127 ~ 127 (273)
.
T Consensus 249 ~ 249 (382)
T PRK14017 249 A 249 (382)
T ss_pred c
Confidence 4
No 279
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=21.11 E-value=1.8e+02 Score=27.27 Aligned_cols=49 Identities=16% Similarity=0.097 Sum_probs=32.1
Q ss_pred CCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCH
Q 024066 6 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDP 63 (273)
Q Consensus 6 Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P 63 (273)
|+.+ .+..|+++.+|+||++..+...+..-.+ ..+ ++|.++++.+-...
T Consensus 238 G~~v-~~leeal~~aDVVItaTG~~~vI~~~~~------~~m--K~GailiN~G~~~~ 286 (406)
T TIGR00936 238 GFRV-MTMEEAAKIGDIFITATGNKDVIRGEHF------ENM--KDGAIVANIGHFDV 286 (406)
T ss_pred CCEe-CCHHHHHhcCCEEEECCCCHHHHHHHHH------hcC--CCCcEEEEECCCCc
Confidence 5543 3567889999999998887665543221 112 45678888877654
No 280
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.20 E-value=90 Score=27.61 Aligned_cols=18 Identities=11% Similarity=0.268 Sum_probs=10.5
Q ss_pred HHHHHhcCCEEEEeCCCh
Q 024066 13 PFEVAEASDVVITMLPSS 30 (273)
Q Consensus 13 ~~e~~~~advvi~~v~~~ 30 (273)
.++.++++|+||.+++.+
T Consensus 196 L~~~~~~aDIvI~AtG~~ 213 (283)
T PRK14192 196 LPELVKQADIIVGAVGKP 213 (283)
T ss_pred HHHHhccCCEEEEccCCC
Confidence 445556666666666433
No 281
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=20.17 E-value=1.3e+02 Score=26.76 Aligned_cols=40 Identities=10% Similarity=0.217 Sum_probs=27.3
Q ss_pred CCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCC
Q 024066 11 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 61 (273)
Q Consensus 11 ~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~ 61 (273)
.+..+.++++|++++++.-+.-+.. ..+ .+|.++||-++.
T Consensus 191 ~~l~~~~k~ADIvv~AvG~p~~i~~------d~v-----k~gavVIDVGin 230 (283)
T COG0190 191 KDLASITKNADIVVVAVGKPHFIKA------DMV-----KPGAVVIDVGIN 230 (283)
T ss_pred CCHHHHhhhCCEEEEecCCcccccc------ccc-----cCCCEEEecCCc
Confidence 4578889999999999987754431 121 345788886554
No 282
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=20.09 E-value=6.6e+02 Score=22.76 Aligned_cols=65 Identities=15% Similarity=0.209 Sum_probs=41.8
Q ss_pred eEEEEcCC-CCHHHHHHHHHHHhhchhhhccCCCCCceEEEecCCCCH-----HHHhcCceEEEeecCHHHHHHHHHHHH
Q 024066 53 QLLIDSST-IDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGV-----LAAEAGTLTFMVGGSEDAYQAAKPLFL 126 (273)
Q Consensus 53 ~iiid~ST-~~P~~~~~l~~~~~~~g~~~~~g~~~g~~~ldapv~G~~-----~~a~~g~l~~~vgG~~~~~~~~~~~l~ 126 (273)
.+.||.+. -+++++.++.+.+++. ++.|++-|+.-.. .-.....+++..+=.-.....++++++
T Consensus 165 ~l~vDaN~~w~~~~A~~~~~~l~~~----------~l~~iEeP~~~~d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~ 234 (361)
T cd03322 165 HLLHDVHHRLTPNQAARFGKDVEPY----------RLFWMEDPTPAENQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQ 234 (361)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhhc----------CCCEEECCCCcccHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHH
Confidence 68899976 7889999999988753 4889999995322 122222334433322234566777766
Q ss_pred H
Q 024066 127 S 127 (273)
Q Consensus 127 ~ 127 (273)
.
T Consensus 235 ~ 235 (361)
T cd03322 235 E 235 (361)
T ss_pred h
Confidence 5
Done!