BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024067
(273 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1AK2|A Chain A, Adenylate Kinase Isoenzyme-2
pdb|2AK2|A Chain A, Adenylate Kinase Isoenzyme-2
Length = 233
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 106/217 (48%), Gaps = 24/217 (11%)
Query: 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKL 121
+GV+ VL+G PG K A L+K V H++ G ++R ++ S L K++ ++ GKL
Sbjct: 15 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKL 74
Query: 122 VPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVD-----VDLVINFKSI 176
V ++++ L+ K LE + +GF+LDG PRT QAE+LD +++ +D VI F SI
Sbjct: 75 VSDEMVLELIEKNLETPPCK--NGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEF-SI 131
Query: 177 EDQLVKRNLES------------EAFSPHKEFLR--LGGXXXXXXXXXXXWKEKFRI--Y 220
D L+ R + E F+P KE ++ + G K R+ Y
Sbjct: 132 PDSLLIRRITGRLIHPQSGRSYHEEFNPPKEPMKDDITGEPLIRRSDDNKKALKIRLEAY 191
Query: 221 AEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSAL 257
Q L +YYSK+ + P + +L+A
Sbjct: 192 HTQTTPLVEYYSKRGIHSAIDASQTPDVVFASILAAF 228
>pdb|2C9Y|A Chain A, Structure Of Human Adenylate Kinase 2
Length = 242
Score = 80.9 bits (198), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 105/217 (48%), Gaps = 24/217 (11%)
Query: 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKL 121
+G++ VL+G PG K A L++ V H++ G ++R ++ S L K++ ++ GKL
Sbjct: 15 KGIRAVLLGPPGAGKGTQAPRLAENFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKL 74
Query: 122 VPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVD-----VDLVINFKSI 176
V ++++ L+ K LE + +GF+LDG PRT QAE+LD +++ +D VI F SI
Sbjct: 75 VSDEMVVELIEKNLETPLCK--NGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEF-SI 131
Query: 177 EDQLVKRNLES------------EAFSPHKEFLR--LGGXXXXXXXXXXXWKEKFRI--Y 220
D L+ R + E F+P KE ++ + G K R+ Y
Sbjct: 132 PDSLLIRRITGRLIHPKSGRSYHEEFNPPKEPMKDDITGEPLIRRSDDNEKALKIRLQAY 191
Query: 221 AEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSAL 257
Q L +YY K+ + P + +L+A
Sbjct: 192 HTQTTPLIEYYRKRGIHSAIDASQTPDVVFASILAAF 228
>pdb|3FB4|A Chain A, Crystal Structure Of Adenylate Kinase From Marinibacillus
Marinus
Length = 216
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 71/122 (58%), Gaps = 7/122 (5%)
Query: 67 VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
VL+G PG K A+ + + E+PHIS G + R + + L + + +++G LVP++V
Sbjct: 4 VLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEV 63
Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVD-----VDLVINFKSIEDQLV 181
++ +RL + + GF+LDG PRT QA+ LD ++ +D V+N K +++L+
Sbjct: 64 TIGIVHERLSKD--DCQKGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELM 121
Query: 182 KR 183
KR
Sbjct: 122 KR 123
>pdb|3HPR|A Chain A, Crystal Structure Of V148g Adenylate Kinase From E. Coli,
In Complex With Ap5a
pdb|3HPR|B Chain B, Crystal Structure Of V148g Adenylate Kinase From E. Coli,
In Complex With Ap5a
Length = 214
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 97/200 (48%), Gaps = 18/200 (9%)
Query: 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
++ +L+G PG K A + + +P IS G ++R + S L KQ + ++ GKLV
Sbjct: 1 MRIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVT 60
Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQI-VDVDLVINFKS----IED 178
++++ AL+ +R+ + R +GF+LDG PRT QA+ + + ++VD V+ F I D
Sbjct: 61 DELVIALVKERIAQEDCR--NGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVD 118
Query: 179 QLVKRNLESEA-------FSPHKEFLRLGGXXXXXXXXXXXWKEKFRI----YAEQGKSL 227
++V R + + + F+P K + G +E R Y + L
Sbjct: 119 RIVGRRVHAPSGRVYHVKFNPPKVEGKDDGTGEELTTRKDDQEETVRKRLVEYHQMTAPL 178
Query: 228 EDYYSKQRKLLNFQVAAAPG 247
YYSK+ + N + A G
Sbjct: 179 IGYYSKEAEAGNTKYAKVDG 198
>pdb|1AKY|A Chain A, High-Resolution Structures Of Adenylate Kinase From Yeast
Ligated With Inhibitor Ap5a, Showing The Pathway Of
Phosphoryl Transfer
pdb|2AKY|A Chain A, High-Resolution Structures Of Adenylate Kinase From Yeast
Ligated With Inhibitor Ap5a, Showing The Pathway Of
Phosphoryl Transfer
Length = 220
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 95/214 (44%), Gaps = 21/214 (9%)
Query: 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
++ VLIG PG K A NL + H++ G ++R +++ + L + +++G LV
Sbjct: 5 IRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVS 64
Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVD-----VDLVINFKSIED 178
+D++ ++ L ++GFILDG PRT QAE LDQ++ ++ I K ++
Sbjct: 65 DDIMVNMIKDELTNNPA-CKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDE 123
Query: 179 QLVKR-----------NLESEAFSPHKEFLR--LGGXX--XXXXXXXXXWKEKFRIYAEQ 223
LV R + F+P KE ++ + G K++ Y Q
Sbjct: 124 LLVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQRSDDNADALKKRLAAYHAQ 183
Query: 224 GKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSAL 257
+ + D+Y K + P W +L+ L
Sbjct: 184 TEPIVDFYKKTGIWAGVDASQPPATVWADILNKL 217
>pdb|1S3G|A Chain A, Crystal Structure Of Adenylate Kinase From Bacillus
Globisporus
Length = 217
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 71/125 (56%), Gaps = 7/125 (5%)
Query: 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
+ VL+G PG K AD + + PHIS G + R + + L + + +++G LVP
Sbjct: 1 MNIVLMGLPGAGKGTQADRIVEKYGTPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVP 60
Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIV-----DVDLVINFKSIED 178
++V ++ +RL + ++GF+LDG PRT QAE LDQ++ ++ V+N + ++
Sbjct: 61 DEVTIGIVRERLSKSDC--DNGFLLDGFPRTVPQAEALDQLLADMGRKIEHVLNIQVEKE 118
Query: 179 QLVKR 183
+L+ R
Sbjct: 119 ELIAR 123
>pdb|1AKE|A Chain A, Structure Of The Complex Between Adenylate Kinase From
Escherichia Coli And The Inhibitor Ap5a Refined At 1.9
Angstroms Resolution: A Model For A Catalytic Transition
State
pdb|1AKE|B Chain B, Structure Of The Complex Between Adenylate Kinase From
Escherichia Coli And The Inhibitor Ap5a Refined At 1.9
Angstroms Resolution: A Model For A Catalytic Transition
State
pdb|1ANK|A Chain A, The Closed Conformation Of A Highly Flexible Protein: The
Structure Of E. Cloi Adenylate Kinase With Bound Amp And
Amppnp
pdb|1ANK|B Chain B, The Closed Conformation Of A Highly Flexible Protein: The
Structure Of E. Cloi Adenylate Kinase With Bound Amp And
Amppnp
pdb|4AKE|A Chain A, Adenylate Kinase
pdb|4AKE|B Chain B, Adenylate Kinase
pdb|2ECK|A Chain A, Structure Of Phosphotransferase
pdb|2ECK|B Chain B, Structure Of Phosphotransferase
pdb|3HPQ|A Chain A, Crystal Structure Of Wild-Type Adenylate Kinase From E.
Coli, In Complex With Ap5a
pdb|3HPQ|B Chain B, Crystal Structure Of Wild-Type Adenylate Kinase From E.
Coli, In Complex With Ap5a
Length = 214
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 74/130 (56%), Gaps = 3/130 (2%)
Query: 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
++ +L+G PG K A + + +P IS G ++R + S L KQ + ++ GKLV
Sbjct: 1 MRIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVT 60
Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQI-VDVDLVINFKSIEDQLVK 182
++++ AL+ +R+ + R +GF+LDG PRT QA+ + + ++VD V+ F ++ +V
Sbjct: 61 DELVIALVKERIAQEDCR--NGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVD 118
Query: 183 RNLESEAFSP 192
R + +P
Sbjct: 119 RIVGRRVHAP 128
>pdb|3AKY|A Chain A, Stability, Activity And Structure Of Adenylate Kinase
Mutants
Length = 220
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 94/214 (43%), Gaps = 21/214 (9%)
Query: 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
++ VLIG PG K A NL + H++ G ++R +++ + L + +++G LV
Sbjct: 5 IRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVS 64
Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVD-----VDLVINFKSIED 178
+D++ ++ L ++GFILDG PRT QAE LDQ++ ++ I K ++
Sbjct: 65 DDIMVNMIKDELTNNPA-CKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDE 123
Query: 179 QLVKR-----------NLESEAFSPHKEFLR--LGGXX--XXXXXXXXXWKEKFRIYAEQ 223
LV R + F+P KE ++ + G K++ Y Q
Sbjct: 124 LLVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQRSDDNADALKKRLAAYHAQ 183
Query: 224 GKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSAL 257
+ + D+Y K + P W L+ L
Sbjct: 184 TEPIVDFYKKTGIWAGVDASQPPATVWADFLNKL 217
>pdb|1ZIN|A Chain A, Adenylate Kinase With Bound Ap5a
pdb|1ZIO|A Chain A, Phosphotransferase
pdb|1ZIP|A Chain A, Bacillus Stearothermophilus Adenylate Kinase
Length = 217
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 67/125 (53%), Gaps = 7/125 (5%)
Query: 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
+ VL+G PG K A+ + +PHIS G + R + + L Q ++ G LVP
Sbjct: 1 MNLVLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVP 60
Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIV-----DVDLVINFKSIED 178
++V ++ +RL + ++GF+LDG PRT QAE L+ ++ +D VI+ +D
Sbjct: 61 DEVTIGIVRERLSKDDC--QNGFLLDGFPRTVAQAEALETMLADIGRKLDYVIHIDVRQD 118
Query: 179 QLVKR 183
L++R
Sbjct: 119 VLMER 123
>pdb|1UKY|A Chain A, Substrate Specificity And Assembly Of Catalytic Center
Derived From Two Structures Of Ligated Uridylate Kinase
pdb|1UKZ|A Chain A, Substrate Specificity And Assembly Of Catalytic Center
Derived From Two Structures Of Ligated Uridylate Kinase
Length = 203
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 92/205 (44%), Gaps = 15/205 (7%)
Query: 56 AGSPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQ-IAN 114
A SP + V +VL G PG K + L K H+S G L+R E + Y + I N
Sbjct: 9 AFSPDQVSVIFVL-GGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKN 67
Query: 115 AVNEGKLVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQ-IVDVDLVINF 173
+ EG++VP+++ ALL + + + F++DG PR QA ++ IV+ ++ F
Sbjct: 68 CIKEGQIVPQEITLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDIVESKFILFF 127
Query: 174 KSIEDQLVKRNLESEAFSPHKEFLRLGGXXXXXXXXXXXWKEKFRIYAEQGKSLEDYYSK 233
ED +++R LE G K++F + E + +Y+
Sbjct: 128 DCPEDIMLERLLER------------GKTSGRSDDNIESIKKRFNTFKETSMPVIEYFET 175
Query: 234 QRKLLNFQVAAAPGETWQGLLSALH 258
+ K++ + + + ++ + A+
Sbjct: 176 KSKVVRVRCDRSVEDVYKDVQDAIR 200
>pdb|3TLX|A Chain A, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
pdb|3TLX|B Chain B, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
pdb|3TLX|C Chain C, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
pdb|3TLX|D Chain D, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
Length = 243
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 70/124 (56%), Gaps = 7/124 (5%)
Query: 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPE 124
+++ +G PG K + NL K H+S G L+R+ ++ L +I N +NEGKLV +
Sbjct: 31 RYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDD 90
Query: 125 DVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIV-----DVDLVINFKSIEDQ 179
++ +L+ ++L+ + + GFILDG PR QAE L++++ +D V F ++
Sbjct: 91 QMVLSLVDEKLKTP--QCKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEV 148
Query: 180 LVKR 183
LV R
Sbjct: 149 LVNR 152
>pdb|2AR7|A Chain A, Crystal Structure Of Human Adenylate Kinase 4, Ak4
pdb|2AR7|B Chain B, Crystal Structure Of Human Adenylate Kinase 4, Ak4
pdb|2BBW|A Chain A, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
Complex With Diguanosine Pentaphosphate
pdb|2BBW|B Chain B, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
Complex With Diguanosine Pentaphosphate
Length = 246
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 69/121 (57%), Gaps = 7/121 (5%)
Query: 67 VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
V++G PG K +++ + H+S G +R+ + + + + + + LVP+ V
Sbjct: 31 VILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHV 90
Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVIN----FKSIEDQLVK 182
I L+ LE RG+ ++LDG PRT QAE LD+I +VDLVI+ F++++D+L +
Sbjct: 91 ITRLMMSELEN--RRGQH-WLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSR 147
Query: 183 R 183
R
Sbjct: 148 R 148
>pdb|3NDP|A Chain A, Crystal Structure Of Human Ak4(L171p)
pdb|3NDP|B Chain B, Crystal Structure Of Human Ak4(L171p)
Length = 231
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 69/121 (57%), Gaps = 7/121 (5%)
Query: 67 VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
V++G PG K +++ + H+S G +R+ + + + + + + LVP+ V
Sbjct: 9 VILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHV 68
Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVIN----FKSIEDQLVK 182
I L+ LE RG+ ++LDG PRT QAE LD+I +VDLVI+ F++++D+L +
Sbjct: 69 ITRLMMSELEN--RRGQH-WLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSR 125
Query: 183 R 183
R
Sbjct: 126 R 126
>pdb|1DVR|A Chain A, Structure Of A Mutant Adenylate Kinase Ligated With An
Atp- Analogue Showing Domain Closure Over Atp
pdb|1DVR|B Chain B, Structure Of A Mutant Adenylate Kinase Ligated With An
Atp- Analogue Showing Domain Closure Over Atp
Length = 220
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 94/214 (43%), Gaps = 21/214 (9%)
Query: 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
++ VLIG PG K A NL + H++ G ++R +++ + L + +++G LV
Sbjct: 5 IRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVS 64
Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVD-----VDLVINFKSIED 178
+D++ ++ L ++GFIL G PRT QAE LDQ++ ++ I K ++
Sbjct: 65 DDIMVNMIKDELTNNPA-CKNGFILVGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDE 123
Query: 179 QLVKR-----------NLESEAFSPHKEFLR--LGGXX--XXXXXXXXXWKEKFRIYAEQ 223
LV R + F+P KE ++ + G K++ Y Q
Sbjct: 124 LLVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQISDDNADALKKRLAAYHAQ 183
Query: 224 GKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSAL 257
+ + D+Y K + P W +L+ L
Sbjct: 184 TEPIVDFYKKTGIWAGVDASQPPATVWADILNKL 217
>pdb|1E4V|A Chain A, Mutant G10v Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
pdb|1E4V|B Chain B, Mutant G10v Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
Length = 214
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 73/130 (56%), Gaps = 3/130 (2%)
Query: 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
++ +L+G P K A + + +P IS G ++R + S L KQ + ++ GKLV
Sbjct: 1 MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVT 60
Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQI-VDVDLVINFKSIEDQLVK 182
++++ AL+ +R+ + R +GF+LDG PRT QA+ + + ++VD V+ F ++ +V
Sbjct: 61 DELVIALVKERIAQEDCR--NGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVD 118
Query: 183 RNLESEAFSP 192
R + +P
Sbjct: 119 RIVGRRVHAP 128
>pdb|2CDN|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Adenylate
Kinase Complexed With Two Molecules Of Adp And Mg
Length = 201
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 68/125 (54%), Gaps = 7/125 (5%)
Query: 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
++ +L+G PG K A L++ L +P IS G L R+ + + L + ++ G LVP
Sbjct: 21 MRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVP 80
Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIV-----DVDLVINFKSIED 178
D+ L+ RL +GFILDG PR+ QA+ L +++ D+D V+ F+ E+
Sbjct: 81 SDLTNELVDDRLNN--PDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEE 138
Query: 179 QLVKR 183
L++R
Sbjct: 139 VLLER 143
>pdb|2AK3|A Chain A, The Three-Dimensional Structure Of The Complex Between
Mitochondrial Matrix Adenylate Kinase And Its Substrate
Amp At 1.85 Angstroms Resolution
pdb|2AK3|B Chain B, The Three-Dimensional Structure Of The Complex Between
Mitochondrial Matrix Adenylate Kinase And Its Substrate
Amp At 1.85 Angstroms Resolution
Length = 226
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 71/131 (54%), Gaps = 4/131 (3%)
Query: 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKL 121
R ++ ++G PG K + ++K E+ H+S G L+R + + + +++GKL
Sbjct: 5 RLLRAAIMGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKL 64
Query: 122 VPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLV 181
+P+DV+ L+ L E + ++LDG PRT QAE LD+ +D VIN ++ +++
Sbjct: 65 IPDDVMTRLV---LHELKNLTQYNWLLDGFPRTLPQAEALDRAYQIDTVINL-NVPFEVI 120
Query: 182 KRNLESEAFSP 192
K+ L + P
Sbjct: 121 KQRLTARWIHP 131
>pdb|1P4S|A Chain A, Solution Structure Of Mycobacterium Tuberculosis Adenylate
Kinase
Length = 181
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 68/125 (54%), Gaps = 7/125 (5%)
Query: 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
++ +L+G PG K A L++ L +P IS G L R+ + + L + ++ G LVP
Sbjct: 1 MRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVP 60
Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIV-----DVDLVINFKSIED 178
D+ L+ RL +GFILDG PR+ QA+ L +++ D+D V+ F+ E+
Sbjct: 61 SDLTNELVDDRLNN--PDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEE 118
Query: 179 QLVKR 183
L++R
Sbjct: 119 VLLER 123
>pdb|3DL0|A Chain A, Crystal Structure Of Adenylate Kinase Variant Aklse3
pdb|3DL0|B Chain B, Crystal Structure Of Adenylate Kinase Variant Aklse3
Length = 216
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 72/125 (57%), Gaps = 7/125 (5%)
Query: 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
+ VL+G PG K + + + +PHIS G + R + + L + + +++G+LVP
Sbjct: 1 MNLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVD-----VDLVINFKSIED 178
++V ++ +RL G E GF+LDG PRT QAE L++I++ +D VIN + +D
Sbjct: 61 DEVTIGIVKERL--GKDDCERGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKD 118
Query: 179 QLVKR 183
L++R
Sbjct: 119 VLMER 123
>pdb|2OSB|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (q16l/q199r/)
pdb|2OSB|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (q16l/q199r/)
Length = 216
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 72/125 (57%), Gaps = 7/125 (5%)
Query: 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
+ VL+G PG K + + + +PHIS G + R + + L + + +++G+LVP
Sbjct: 1 MNLVLMGLPGAGKGTLGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVD-----VDLVINFKSIED 178
++V ++ +RL G E GF+LDG PRT QAE L++I++ +D VIN + +D
Sbjct: 61 DEVTIGIVKERL--GKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKD 118
Query: 179 QLVKR 183
L++R
Sbjct: 119 VLMER 123
>pdb|1P3J|A Chain A, Adenylate Kinase From Bacillus Subtilis
Length = 217
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 72/125 (57%), Gaps = 7/125 (5%)
Query: 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
+ VL+G PG K + + + +PHIS G + R + + L + + +++G+LVP
Sbjct: 1 MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVD-----VDLVINFKSIED 178
++V ++ +RL G E GF+LDG PRT QAE L++I++ +D VIN + +D
Sbjct: 61 DEVTIGIVKERL--GKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKD 118
Query: 179 QLVKR 183
L++R
Sbjct: 119 VLMER 123
>pdb|2QAJ|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199rG213E)
pdb|2QAJ|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199rG213E)
Length = 217
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 72/125 (57%), Gaps = 7/125 (5%)
Query: 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
+ VL+G PG K + + + +PHIS G + R + + L + + +++G+LVP
Sbjct: 1 MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVD-----VDLVINFKSIED 178
++V ++ +RL G E GF+LDG PRT QAE L++I++ +D VIN + +D
Sbjct: 61 DEVTIGIVKERL--GKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKD 118
Query: 179 QLVKR 183
L++R
Sbjct: 119 VLMER 123
>pdb|2P3S|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (G214rQ199R)
Length = 217
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 72/125 (57%), Gaps = 7/125 (5%)
Query: 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
+ VL+G PG K + + + +PHIS G + R + + L + + +++G+LVP
Sbjct: 1 MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVD-----VDLVINFKSIED 178
++V ++ +RL G E GF+LDG PRT QAE L++I++ +D VIN + +D
Sbjct: 61 DEVTIGIVKERL--GKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKD 118
Query: 179 QLVKR 183
L++R
Sbjct: 119 VLMER 123
>pdb|2EU8|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199r)
pdb|2EU8|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199r)
Length = 216
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 72/125 (57%), Gaps = 7/125 (5%)
Query: 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
+ VL+G PG K + + + +PHIS G + R + + L + + +++G+LVP
Sbjct: 1 MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVD-----VDLVINFKSIED 178
++V ++ +RL G E GF+LDG PRT QAE L++I++ +D VIN + +D
Sbjct: 61 DEVTIGIVKERL--GKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKD 118
Query: 179 QLVKR 183
L++R
Sbjct: 119 VLMER 123
>pdb|2RGX|A Chain A, Crystal Structure Of Adenylate Kinase From Aquifex
Aeolicus In Complex With Ap5a
pdb|2RH5|A Chain A, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|C Chain C, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|B Chain B, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|3SR0|A Chain A, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
pdb|3SR0|B Chain B, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
Length = 206
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 89/206 (43%), Gaps = 20/206 (9%)
Query: 66 WVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPED 125
V +G PG K A L+K HIS G ++R+ + + L K+ + G+LVP+D
Sbjct: 3 LVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDD 62
Query: 126 VIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVD-----VDLVINFKSIEDQL 180
+I AL+ E + I DG PRT QAE LD++++ VD V+ F + D++
Sbjct: 63 LIIALI-----EEVFPKHGNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLF-EVPDEV 116
Query: 181 VKRNLESEAFSPHK-EFLRLG--------GXXXXXXXXXXXWKEKFRIYAEQGKSLEDYY 231
V L +P E + K++ +Y EQ L +YY
Sbjct: 117 VIERLSGRRINPETGEVYHVKYNPPPPGVKVIQREDDKPEVIKKRLEVYREQTAPLIEYY 176
Query: 232 SKQRKLLNFQVAAAPGETWQGLLSAL 257
K+ L + E ++ +L +
Sbjct: 177 KKKGILRIIDASKPVEEVYRQVLEVI 202
>pdb|2OO7|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (T179iQ199R)
pdb|2OO7|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (T179iQ199R)
Length = 217
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 72/125 (57%), Gaps = 7/125 (5%)
Query: 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
+ VL+G PG K + + + +PHIS G + R + + L + + +++G+LVP
Sbjct: 1 MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVD-----VDLVINFKSIED 178
++V ++ +RL G E GF+LDG PRT QAE L++I++ +D VIN + +D
Sbjct: 61 DEVTIGIVKERL--GKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKD 118
Query: 179 QLVKR 183
L++R
Sbjct: 119 VLMER 123
>pdb|3DKV|A Chain A, Crystal Structure Of Adenylate Kinase Variant Aklse1
Length = 217
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 74/125 (59%), Gaps = 7/125 (5%)
Query: 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
+ VL+G PG K A+ + + +PHIS G + R + + L + + +++G+LVP
Sbjct: 1 MNIVLMGLPGAGKGTQAERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVD-----VDLVINFKSIED 178
++V ++ +RL + E GF+LDG PRT QAE L++I++ +D VIN + ++
Sbjct: 61 DEVTIGIVRERLSKS--DCERGFLLDGFPRTVAQAEALEEILEEMGRPIDYVINIQVDKE 118
Query: 179 QLVKR 183
+L++R
Sbjct: 119 ELMER 123
>pdb|1ZD8|A Chain A, Structure Of Human Adenylate Kinase 3 Like 1
Length = 227
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 72/132 (54%), Gaps = 6/132 (4%)
Query: 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANA-VNEGK 120
R ++ V++G PG K + ++ E+ H+S G L+R + R +A A +++GK
Sbjct: 6 RLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNML-RGTEIGVLAKAFIDQGK 64
Query: 121 LVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQL 180
L+P+DV+ L L E + ++LDG PRT QAE LD+ +D VIN ++ ++
Sbjct: 65 LIPDDVMTRLA---LHELKNLTQYSWLLDGFPRTLPQAEALDRAYQIDTVINL-NVPFEV 120
Query: 181 VKRNLESEAFSP 192
+K+ L + P
Sbjct: 121 IKQRLTARWIHP 132
>pdb|2ORI|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (A193vQ199R)
pdb|2ORI|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (A193vQ199R)
Length = 216
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 72/125 (57%), Gaps = 7/125 (5%)
Query: 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
+ VL+G PG K + + + +PHIS G + R + + L + + +++G+LVP
Sbjct: 1 MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVD-----VDLVINFKSIED 178
++V ++ +RL G E GF+LDG PRT QAE L++I++ +D VIN + +D
Sbjct: 61 DEVTIGIVKERL--GKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKD 118
Query: 179 QLVKR 183
L++R
Sbjct: 119 VLMER 123
>pdb|1E4Y|A Chain A, Mutant P9l Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
pdb|1E4Y|B Chain B, Mutant P9l Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
Length = 214
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 62/105 (59%), Gaps = 3/105 (2%)
Query: 89 VPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGESGFIL 148
+P IS G ++R + S L KQ + ++ GKLV ++++ AL+ +R+ + R +GF+L
Sbjct: 26 IPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCR--NGFLL 83
Query: 149 DGIPRTRIQAEILDQI-VDVDLVINFKSIEDQLVKRNLESEAFSP 192
DG PRT QA+ + + ++VD V+ F ++ +V R + +P
Sbjct: 84 DGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVGRRVHAP 128
>pdb|3GMT|A Chain A, Crystal Structure Of Adenylate Kinase From Burkholderia
Pseu
pdb|3GMT|B Chain B, Crystal Structure Of Adenylate Kinase From Burkholderia
Pseu
Length = 230
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 63/120 (52%), Gaps = 3/120 (2%)
Query: 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPE 124
+ +L+G PG K A+ + + +P IS G +R + + L + +EGKLVP+
Sbjct: 10 RLILLGAPGAGKGTQANFIKEKFGIPQISTGDXLRAAVKAGTPLGVEAKTYXDEGKLVPD 69
Query: 125 DVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQI-VDVDLVINFKSIEDQLVKR 183
+I L+ +RL+E +G++ DG PRT QA+ + V +D V+ ++++R
Sbjct: 70 SLIIGLVKERLKEADC--ANGYLFDGFPRTIAQADAXKEAGVAIDYVLEIDVPFSEIIER 127
>pdb|2BWJ|A Chain A, Structure Of Adenylate Kinase 5
pdb|2BWJ|B Chain B, Structure Of Adenylate Kinase 5
pdb|2BWJ|C Chain C, Structure Of Adenylate Kinase 5
pdb|2BWJ|D Chain D, Structure Of Adenylate Kinase 5
pdb|2BWJ|E Chain E, Structure Of Adenylate Kinase 5
pdb|2BWJ|F Chain F, Structure Of Adenylate Kinase 5
Length = 199
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 59/121 (48%), Gaps = 4/121 (3%)
Query: 68 LIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVI 127
+IG PG K + L + H+S G L+R+EL+ S K I + + G LVP ++
Sbjct: 17 IIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIV 76
Query: 128 FALLSKRLEEGYYRGES-GFILDGIPRTRIQAEILD-QIVDVDLVINFKSIEDQLVKRNL 185
LL + + G++ GF++DG PR Q E +I D LVI D + R L
Sbjct: 77 LELLKEAMVASL--GDTRGFLIDGYPREVKQGEEFGRRIGDPQLVICMDCSADTMTNRLL 134
Query: 186 E 186
+
Sbjct: 135 Q 135
>pdb|3CM0|A Chain A, Crystal Structure Of Adenylate Kinase From Thermus
Thermophilus Hb8
Length = 186
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 7/103 (6%)
Query: 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLV 122
G + +G PG K A L++ L +S G ++R ++ + L +++ + G LV
Sbjct: 4 GQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLV 63
Query: 123 PEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIV 165
P+D+I L+ + L E I DG PRT QAE LD+++
Sbjct: 64 PDDLILELIREELAE-------RVIFDGFPRTLAQAEALDRLL 99
>pdb|3BE4|A Chain A, Crystal Structure Of Cryptosporidium Parvum Adenylate
Kinase Cgd5_3360
Length = 217
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 66/122 (54%), Gaps = 7/122 (5%)
Query: 67 VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
+LIG PG K + + K + H+S G ++R+ + + + + + + G V +++
Sbjct: 9 ILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEI 68
Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAE----ILDQIVD-VDLVINFKSIEDQLV 181
+ L+ ++ + G +GF+LDG PRT QAE IL +I D + VI F+ + +++
Sbjct: 69 VLGLVKEKFDLGVCV--NGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEII 126
Query: 182 KR 183
+R
Sbjct: 127 ER 128
>pdb|3UMF|A Chain A, Schistosoma Mansoni Adenylate Kinase
Length = 217
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 78/179 (43%), Gaps = 14/179 (7%)
Query: 68 LIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVI 127
++G PG K + L + H+S G L+R E+ S K++ + G+LVP +V+
Sbjct: 34 VLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVV 93
Query: 128 FALLSKRLEEGYYRGESGFILDGIPRTRIQA-EILDQIVDVDLVINFKSIEDQLVKRNLE 186
ALL + + + F++DG PR Q + ++ VINF E+ + KR L+
Sbjct: 94 LALLKEAMIK-LVDKNCHFLIDGYPRELDQGIKFEKEVCPCLCVINFDVSEEVMRKRLLK 152
Query: 187 SEAFSPHKEFLRLGGXXXXXXXXXXXWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAA 245
S + ++FR + E K + ++Y +Q K++ +
Sbjct: 153 RAETSNRVD------------DNEETIVKRFRTFNELTKPVIEHYKQQNKVITIDASGT 199
>pdb|3L0P|A Chain A, Crystal Structures Of Iron Containing Adenylate Kinase
From Desulfovibrio Gigas
pdb|3L0S|A Chain A, Crystal Structures Of Zinc, Cobalt And Iron Containing
Adenylate Kinase From Gram-Negative Bacteria
Desulfovibrio Gigas
pdb|3L0S|C Chain C, Crystal Structures Of Zinc, Cobalt And Iron Containing
Adenylate Kinase From Gram-Negative Bacteria
Desulfovibrio Gigas
Length = 223
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 57/111 (51%), Gaps = 4/111 (3%)
Query: 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
+ ++ G G K + + + HI G + R+ + + L K+ ++ G LVP
Sbjct: 1 MNILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVP 60
Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAE-ILDQIVDVDLVINF 173
+D+ ++ + LE +G+ G++LDG PR +QA+ + + + + + INF
Sbjct: 61 DDITIPMVLETLES---KGKDGWLLDGFPRNTVQAQKLFEALQEKGMKINF 108
>pdb|2XB4|A Chain A, Crystal Structures Of Zinc Containing Adenylate Kinase
From Desulfovibrio Gigas
Length = 223
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 63/131 (48%), Gaps = 14/131 (10%)
Query: 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
+ ++ G G K + + + HI G + R+ + + L K+ ++ G LVP
Sbjct: 1 MNILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVP 60
Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKR 183
+D+ ++ + LE +G+ G++LDG PR +QA+ L F++++++ +K
Sbjct: 61 DDITIPMVLETLES---KGKDGWLLDGFPRNTVQAQKL-----------FEALQEKGMKI 106
Query: 184 NLESEAFSPHK 194
N E P +
Sbjct: 107 NFVIEILLPRE 117
>pdb|1QF9|A Chain A, Ph Influences Fluoride Coordination Number Of The Alfx
Phosphoryl Transfer Transition State Analog In UmpCMP
Kinase
pdb|5UKD|A Chain A, Ph Influences Fluoride Coordination Number Of The Alfx
Phosphoryl Transfer Transition State Analog
pdb|1UKE|A Chain A, UmpCMP KINASE FROM SLIME MOLD
pdb|2UKD|A Chain A, UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, CMP
pdb|3UKD|A Chain A, UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, CMP, AND
Alf3
pdb|4UKD|A Chain A, UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, UDP,
Beryllium Fluoride
Length = 194
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 71/174 (40%), Gaps = 19/174 (10%)
Query: 68 LIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVI 127
++G PG K N+ + H+S G L+RQE S + IA + G++VP V
Sbjct: 11 VLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVT 70
Query: 128 FALLSKRLEEGYYRGESGFILDGIPR----TRIQAEILDQIVDVDLVINFKSIEDQLVKR 183
LL ++ + F++DG PR E + VD V+ F E+ + +R
Sbjct: 71 VKLLKNAIDANQGK---NFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQR 127
Query: 184 NLESEAFSPHKEFLRLGGXXXXXXXXXXXWKEKFRIYAEQGKSLEDYYSKQRKL 237
L+ G K++F + Q K + D+Y+K K+
Sbjct: 128 ------------LLKRGESSGRSDDNIESIKKRFNTFNVQTKLVIDHYNKFDKV 169
>pdb|1TEV|A Chain A, Crystal Structure Of The Human UmpCMP KINASE IN OPEN
Conformation
Length = 196
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 63/126 (50%), Gaps = 7/126 (5%)
Query: 68 LIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQEL-SPRSALYKQIANAVNEGKLVPEDV 126
++G PG K + + H+S G L+R E +P S + I + EGK+VP ++
Sbjct: 8 VLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEI 67
Query: 127 IFALLSKRLEEGYYRG--ESGFILDGIPRTR--IQA--EILDQIVDVDLVINFKSIEDQL 180
+LL + +++ ++ F++DG PR + +Q + +D DV V+ F +
Sbjct: 68 TISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEIC 127
Query: 181 VKRNLE 186
++R LE
Sbjct: 128 IERCLE 133
>pdb|1ZAK|A Chain A, Adenylate Kinase From Maize In Complex With The Inhibitor
P1,P5-Bis(Adenosine-5'-)pentaphosphate (Ap5a)
pdb|1ZAK|B Chain B, Adenylate Kinase From Maize In Complex With The Inhibitor
P1,P5-Bis(Adenosine-5'-)pentaphosphate (Ap5a)
Length = 222
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 67/121 (55%), Gaps = 2/121 (1%)
Query: 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
++ ++ G P K + + ++ HIS G L+R E++ S K+ + +G+LVP
Sbjct: 6 LKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVP 65
Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQI-VDVDLVINFKSIEDQLVK 182
++++ ++ +RL + + E+G++LDG PR+ QA L+ + + D I ++ LV+
Sbjct: 66 DEIVVNMVKERLRQPDAQ-ENGWLLDGYPRSYSQAMALETLEIRPDTFILLDVPDELLVE 124
Query: 183 R 183
R
Sbjct: 125 R 125
>pdb|1Z83|A Chain A, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|1Z83|B Chain B, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|1Z83|C Chain C, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|2C95|A Chain A, Structure Of Adenylate Kinase 1 In Complex With P1,P4-Di
(Adenosine)tetraphosphate
pdb|2C95|B Chain B, Structure Of Adenylate Kinase 1 In Complex With P1,P4-Di
(Adenosine)tetraphosphate
Length = 196
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 68 LIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVI 127
++G PG K + + + H+S G L+R E+S SA K+++ + +G+LVP + +
Sbjct: 14 VVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLETV 73
Query: 128 FALLSKRLEEGYYRGESGFILDGIPRTRIQAE 159
+L + GF++DG PR Q E
Sbjct: 74 LDMLRDAM-VAKVNTSKGFLIDGYPREVQQGE 104
>pdb|3ADK|A Chain A, Refined Structure Of Porcine Cytosolic Adenylate Kinase At
2.1 Angstroms Resolution
Length = 195
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 68 LIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVI 127
++G PG K + + + H+S G L+R E+S SA K ++ + +G+LVP + +
Sbjct: 14 VVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQLVPLETV 73
Query: 128 FALLSKRLEEGYYRGESGFILDGIPRTRIQAE 159
+L + GF++DG PR Q E
Sbjct: 74 LDMLRDAM-VAKVDTSKGFLIDGYPREVKQGE 104
>pdb|1PMH|X Chain X, Crystal Structure Of Caldicellulosiruptor Saccharolyticus
Cbm27-1 In Complex With Mannohexaose
Length = 185
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 20/82 (24%)
Query: 183 RNLESEAFSPHKEFLRLGGXXXXXXXXXXXWKE---KFRIYAEQGKSL------------ 227
+++E E F P+ EF + G WKE +F I A GK +
Sbjct: 83 KSVEFEXFIPYDEFSKSQGGFAYKVVINDGWKELGSEFNITANAGKKVKINGKDYTVIHK 142
Query: 228 -----EDYYSKQRKLLNFQVAA 244
ED+ +K+R L FQ A
Sbjct: 143 AFAIPEDFRTKKRAQLVFQFAG 164
>pdb|1PMJ|X Chain X, Crystal Structure Of Caldicellulosiruptor Saccharolyticus
Cbm27-1
Length = 185
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 20/82 (24%)
Query: 183 RNLESEAFSPHKEFLRLGGXXXXXXXXXXXWKE---KFRIYAEQGKSL------------ 227
+++E E F P+ EF + G WKE +F I A GK +
Sbjct: 83 KSVEFEMFIPYDEFSKSQGGFAYKVVINDGWKELGSEFNITANAGKKVKINGKDYTVIHK 142
Query: 228 -----EDYYSKQRKLLNFQVAA 244
ED+ +K+R L FQ A
Sbjct: 143 AFAIPEDFRTKKRAQLVFQFAG 164
>pdb|3H0D|A Chain A, Crystal Structure Of Ctsr In Complex With A 26bp Dna
Duplex
pdb|3H0D|B Chain B, Crystal Structure Of Ctsr In Complex With A 26bp Dna
Duplex
Length = 155
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 46/81 (56%), Gaps = 7/81 (8%)
Query: 117 NEGKLVPEDVIFALLSK-RLEEGYY----RGESGFILDGIPRTRIQAEILDQIVD-VDLV 170
N+ + VP + + + ++ LE GY RG G+I +T+ +A+++DQ+++ +D
Sbjct: 32 NKFRCVPSQINYVINTRFTLERGYIVESKRGGGGYIRIXKVKTKSEAQLIDQLLELIDHR 91
Query: 171 INFKSIEDQLVKRNLESEAFS 191
I+ S ED ++KR E + S
Sbjct: 92 ISQSSAED-VIKRLXEEKVIS 111
>pdb|1IOM|A Chain A, Crystal Structure Of Citrate Synthase From Thermus
Thermophilus Hb8
pdb|1IXE|A Chain A, Crystal Structure Of Citrate Synthase From Thermus
Thermophilus Hb8
pdb|1IXE|B Chain B, Crystal Structure Of Citrate Synthase From Thermus
Thermophilus Hb8
pdb|1IXE|C Chain C, Crystal Structure Of Citrate Synthase From Thermus
Thermophilus Hb8
pdb|1IXE|D Chain D, Crystal Structure Of Citrate Synthase From Thermus
Thermophilus Hb8
Length = 377
Score = 27.3 bits (59), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 14/76 (18%)
Query: 43 HGQASEPMLRLDSAGSPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQEL 102
HG A+E ++R+ P R +WV + L+K + + MG V +
Sbjct: 219 HGGANEAVMRMIQEIGTPERAREWV------------REKLAKKERI--MGMGHRVYKAF 264
Query: 103 SPRSALYKQIANAVNE 118
PR+ + +++A V E
Sbjct: 265 DPRAGVLEKLARLVAE 280
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,985,513
Number of Sequences: 62578
Number of extensions: 270261
Number of successful extensions: 825
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 740
Number of HSP's gapped (non-prelim): 51
length of query: 273
length of database: 14,973,337
effective HSP length: 97
effective length of query: 176
effective length of database: 8,903,271
effective search space: 1566975696
effective search space used: 1566975696
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)