Query 024067
Match_columns 273
No_of_seqs 191 out of 1570
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 08:42:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024067.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024067hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02459 probable adenylate ki 100.0 3.4E-43 7.4E-48 307.2 24.5 203 62-264 28-256 (261)
2 PLN02674 adenylate kinase 100.0 9.4E-43 2E-47 303.1 25.0 193 63-257 31-243 (244)
3 PRK14526 adenylate kinase; Pro 100.0 7.6E-40 1.6E-44 280.6 24.6 196 64-261 1-211 (211)
4 KOG3079 Uridylate kinase/adeny 100.0 2.3E-39 5E-44 264.6 22.9 186 60-259 5-193 (195)
5 TIGR01351 adk adenylate kinase 100.0 4.6E-39 9.9E-44 276.0 24.4 192 65-257 1-209 (210)
6 PRK14529 adenylate kinase; Pro 100.0 2.6E-39 5.7E-44 278.3 22.7 191 64-257 1-222 (223)
7 PTZ00088 adenylate kinase 1; P 100.0 5.5E-39 1.2E-43 278.3 24.6 196 62-257 5-229 (229)
8 PRK00279 adk adenylate kinase; 100.0 1.6E-37 3.4E-42 267.4 23.9 194 64-259 1-214 (215)
9 PRK13808 adenylate kinase; Pro 100.0 5.2E-36 1.1E-40 270.4 24.1 190 64-262 1-196 (333)
10 PRK14530 adenylate kinase; Pro 100.0 1.6E-35 3.4E-40 254.9 24.8 192 63-260 3-214 (215)
11 PRK14528 adenylate kinase; Pro 100.0 2.2E-35 4.9E-40 248.7 23.6 180 64-257 2-186 (186)
12 PRK14531 adenylate kinase; Pro 100.0 3.9E-35 8.5E-40 246.5 23.4 175 64-257 3-182 (183)
13 KOG3078 Adenylate kinase [Nucl 100.0 1.8E-35 3.9E-40 252.7 19.5 198 62-262 14-227 (235)
14 PRK14532 adenylate kinase; Pro 100.0 3E-34 6.5E-39 241.7 24.1 181 64-258 1-186 (188)
15 PLN02200 adenylate kinase fami 100.0 2.6E-33 5.6E-38 243.9 25.5 184 62-262 42-227 (234)
16 PRK14527 adenylate kinase; Pro 100.0 3.7E-33 7.9E-38 236.0 24.2 182 61-257 4-190 (191)
17 PRK02496 adk adenylate kinase; 100.0 5.1E-33 1.1E-37 233.5 23.4 178 63-258 1-183 (184)
18 TIGR01359 UMP_CMP_kin_fam UMP- 100.0 6.2E-33 1.3E-37 232.4 23.2 178 65-257 1-182 (183)
19 cd01428 ADK Adenylate kinase ( 100.0 6.4E-33 1.4E-37 234.0 21.7 183 65-249 1-194 (194)
20 PLN02842 nucleotide kinase 100.0 5.1E-33 1.1E-37 262.0 22.1 193 67-262 1-205 (505)
21 PF00406 ADK: Adenylate kinase 100.0 2.9E-32 6.4E-37 222.0 18.0 146 68-236 1-151 (151)
22 COG0563 Adk Adenylate kinase a 100.0 2E-31 4.3E-36 222.6 20.2 172 64-257 1-177 (178)
23 TIGR01360 aden_kin_iso1 adenyl 100.0 1.8E-29 4E-34 211.7 25.1 183 63-258 3-186 (188)
24 PRK01184 hypothetical protein; 99.8 8.9E-18 1.9E-22 140.8 20.6 172 63-260 1-179 (184)
25 PRK13974 thymidylate kinase; P 99.8 4.4E-18 9.5E-23 146.2 17.0 175 63-260 3-207 (212)
26 PRK03839 putative kinase; Prov 99.8 1.3E-17 2.8E-22 139.4 16.2 153 64-260 1-154 (180)
27 PRK08356 hypothetical protein; 99.8 1.7E-17 3.6E-22 140.7 15.4 173 63-259 5-192 (195)
28 PRK13973 thymidylate kinase; P 99.8 3E-17 6.4E-22 141.1 16.5 174 62-262 2-209 (213)
29 COG0703 AroK Shikimate kinase 99.7 9.6E-17 2.1E-21 131.9 15.0 160 63-260 2-169 (172)
30 PRK13949 shikimate kinase; Pro 99.7 6.2E-16 1.3E-20 128.3 18.0 163 64-257 2-169 (169)
31 PRK06217 hypothetical protein; 99.7 4.4E-16 9.5E-21 130.7 17.2 172 63-259 1-179 (183)
32 PRK08233 hypothetical protein; 99.7 1E-15 2.2E-20 127.5 14.6 171 63-260 3-178 (182)
33 PRK13975 thymidylate kinase; P 99.7 1.3E-14 2.8E-19 122.6 19.8 173 63-263 2-194 (196)
34 PLN02924 thymidylate kinase 99.7 9.6E-15 2.1E-19 126.1 19.0 175 53-260 6-204 (220)
35 PHA02530 pseT polynucleotide k 99.6 8.8E-16 1.9E-20 138.2 10.3 165 63-248 2-171 (300)
36 PRK13948 shikimate kinase; Pro 99.6 2.6E-14 5.5E-19 119.9 16.9 162 62-259 9-175 (182)
37 COG0125 Tmk Thymidylate kinase 99.6 3.9E-14 8.5E-19 120.9 17.6 178 62-261 2-205 (208)
38 PRK13947 shikimate kinase; Pro 99.6 2E-14 4.3E-19 118.9 15.0 163 64-261 2-170 (171)
39 PRK08118 topology modulation p 99.6 9.8E-15 2.1E-19 120.9 12.6 100 63-189 1-101 (167)
40 PRK03731 aroL shikimate kinase 99.6 2.3E-14 5.1E-19 118.6 13.8 162 64-258 3-169 (171)
41 PRK00625 shikimate kinase; Pro 99.6 1.9E-14 4.1E-19 119.8 13.2 115 64-189 1-118 (173)
42 PLN02199 shikimate kinase 99.6 6E-14 1.3E-18 124.7 17.2 175 62-261 101-290 (303)
43 PRK13946 shikimate kinase; Pro 99.6 9.2E-14 2E-18 116.8 17.5 168 62-261 9-178 (184)
44 TIGR00041 DTMP_kinase thymidyl 99.6 4.3E-14 9.2E-19 119.3 15.5 168 63-253 3-195 (195)
45 PRK00081 coaE dephospho-CoA ki 99.6 4.1E-14 9E-19 119.9 14.8 167 63-259 2-193 (194)
46 COG1936 Predicted nucleotide k 99.6 9.1E-14 2E-18 113.5 15.4 153 64-259 1-156 (180)
47 PRK00698 tmk thymidylate kinas 99.6 1.9E-13 4.1E-18 116.0 18.0 176 62-260 2-203 (205)
48 PRK14730 coaE dephospho-CoA ki 99.6 1.6E-13 3.6E-18 116.4 17.0 166 64-258 2-193 (195)
49 COG1102 Cmk Cytidylate kinase 99.6 7E-13 1.5E-17 107.1 18.6 169 64-263 1-176 (179)
50 cd01672 TMPK Thymidine monopho 99.5 1.6E-12 3.5E-17 109.2 20.3 169 64-258 1-199 (200)
51 PRK14021 bifunctional shikimat 99.5 1.6E-13 3.5E-18 133.0 15.8 170 59-260 2-177 (542)
52 PRK00131 aroK shikimate kinase 99.5 2.4E-13 5.3E-18 112.1 14.4 166 62-259 3-171 (175)
53 TIGR02173 cyt_kin_arch cytidyl 99.5 1E-12 2.2E-17 108.3 18.1 162 64-257 1-170 (171)
54 PRK14734 coaE dephospho-CoA ki 99.5 4E-13 8.7E-18 114.4 15.9 167 64-259 2-194 (200)
55 PRK05057 aroK shikimate kinase 99.5 7.1E-13 1.5E-17 110.3 16.7 162 63-259 4-171 (172)
56 PRK04182 cytidylate kinase; Pr 99.5 4.6E-13 1E-17 111.1 15.6 168 64-261 1-175 (180)
57 PRK06762 hypothetical protein; 99.5 9.8E-13 2.1E-17 108.3 16.3 158 63-260 2-165 (166)
58 PRK04040 adenylate kinase; Pro 99.5 1.5E-12 3.3E-17 109.8 17.6 171 63-257 2-187 (188)
59 PLN02422 dephospho-CoA kinase 99.5 9.2E-13 2E-17 114.2 16.6 167 64-260 2-195 (232)
60 PRK08154 anaerobic benzoate ca 99.5 1.3E-12 2.9E-17 118.4 17.9 174 57-261 127-303 (309)
61 TIGR01313 therm_gnt_kin carboh 99.5 9.4E-13 2E-17 108.1 14.1 154 66-257 1-161 (163)
62 KOG3347 Predicted nucleotide k 99.5 8.2E-13 1.8E-17 105.2 13.0 158 62-258 6-165 (176)
63 PRK14731 coaE dephospho-CoA ki 99.5 1.9E-12 4.1E-17 110.9 15.9 168 62-259 4-202 (208)
64 PF02223 Thymidylate_kin: Thym 99.5 1.4E-12 3E-17 109.4 13.8 159 68-253 1-186 (186)
65 PRK13976 thymidylate kinase; P 99.5 4.3E-12 9.4E-17 108.8 16.9 169 64-262 1-204 (209)
66 COG0237 CoaE Dephospho-CoA kin 99.5 4.1E-12 8.9E-17 108.0 16.4 166 63-261 2-194 (201)
67 PTZ00451 dephospho-CoA kinase; 99.5 5.5E-12 1.2E-16 110.3 17.4 169 63-259 1-207 (244)
68 PRK12339 2-phosphoglycerate ki 99.5 1.4E-12 3.1E-17 110.7 13.3 173 62-257 2-195 (197)
69 cd00464 SK Shikimate kinase (S 99.4 3.8E-12 8.2E-17 103.1 15.2 112 66-188 2-113 (154)
70 PRK10078 ribose 1,5-bisphospho 99.4 4.6E-12 9.9E-17 106.6 15.7 163 63-260 2-177 (186)
71 TIGR00152 dephospho-CoA kinase 99.4 3E-12 6.5E-17 107.8 13.9 159 65-254 1-187 (188)
72 PRK07933 thymidylate kinase; V 99.4 4.3E-12 9.3E-17 109.2 15.0 172 64-257 1-211 (213)
73 PF13671 AAA_33: AAA domain; P 99.4 9.4E-13 2E-17 105.3 10.0 114 65-190 1-121 (143)
74 PRK14733 coaE dephospho-CoA ki 99.4 7E-12 1.5E-16 106.9 15.7 170 62-260 5-199 (204)
75 PRK14738 gmk guanylate kinase; 99.4 1.6E-12 3.4E-17 111.3 10.9 172 60-266 10-201 (206)
76 COG3265 GntK Gluconate kinase 99.4 5.3E-12 1.2E-16 100.5 12.5 157 69-260 1-160 (161)
77 smart00072 GuKc Guanylate kina 99.4 1.6E-12 3.5E-17 109.2 10.1 165 63-260 2-183 (184)
78 KOG3354 Gluconate kinase [Carb 99.4 2.3E-12 5E-17 103.3 10.0 162 64-259 13-188 (191)
79 PRK07261 topology modulation p 99.4 1.1E-12 2.4E-17 109.0 8.5 101 64-189 1-101 (171)
80 PF01202 SKI: Shikimate kinase 99.4 9.7E-13 2.1E-17 107.9 8.0 153 72-258 1-158 (158)
81 PRK14732 coaE dephospho-CoA ki 99.4 1E-11 2.2E-16 105.5 14.0 165 66-259 2-190 (196)
82 cd02022 DPCK Dephospho-coenzym 99.4 5E-12 1.1E-16 105.7 11.8 119 65-188 1-143 (179)
83 PRK09825 idnK D-gluconate kina 99.4 1.6E-11 3.5E-16 102.5 14.2 165 63-261 3-170 (176)
84 TIGR03574 selen_PSTK L-seryl-t 99.4 1.2E-11 2.7E-16 108.6 13.7 158 65-259 1-169 (249)
85 KOG3220 Similar to bacterial d 99.4 5.8E-11 1.3E-15 99.1 16.6 167 64-260 2-195 (225)
86 PRK03333 coaE dephospho-CoA ki 99.4 1.9E-11 4E-16 114.4 15.3 169 64-261 2-194 (395)
87 PF01121 CoaE: Dephospho-CoA k 99.3 1.3E-11 2.9E-16 103.3 12.3 119 64-188 1-144 (180)
88 cd02030 NDUO42 NADH:Ubiquinone 99.3 9E-11 1.9E-15 101.3 16.9 174 65-255 1-217 (219)
89 TIGR02322 phosphon_PhnN phosph 99.3 8.5E-11 1.8E-15 97.9 15.8 162 64-259 2-178 (179)
90 PRK13951 bifunctional shikimat 99.3 2.4E-11 5.3E-16 116.3 14.1 108 64-187 1-112 (488)
91 cd02021 GntK Gluconate kinase 99.3 4.5E-11 9.8E-16 96.7 13.6 115 65-189 1-120 (150)
92 cd00227 CPT Chloramphenicol (C 99.3 1E-10 2.2E-15 97.4 15.7 159 63-257 2-174 (175)
93 KOG3327 Thymidylate kinase/ade 99.3 2.6E-10 5.6E-15 94.1 15.9 172 61-262 3-198 (208)
94 PRK11545 gntK gluconate kinase 99.3 1.2E-10 2.6E-15 96.0 13.3 157 69-259 1-160 (163)
95 cd02020 CMPK Cytidine monophos 99.2 6E-11 1.3E-15 95.1 9.4 103 65-187 1-103 (147)
96 PRK00300 gmk guanylate kinase; 99.2 2.2E-10 4.8E-15 97.4 13.4 168 62-262 4-187 (205)
97 PRK06547 hypothetical protein; 99.2 8.5E-11 1.8E-15 97.8 9.7 124 61-188 13-139 (172)
98 COG0194 Gmk Guanylate kinase [ 99.2 6.8E-10 1.5E-14 92.1 14.5 166 62-262 3-185 (191)
99 PRK05541 adenylylsulfate kinas 99.2 4.7E-10 1E-14 93.3 13.5 107 61-185 5-120 (176)
100 PF13207 AAA_17: AAA domain; P 99.2 9.2E-12 2E-16 96.9 2.2 109 65-187 1-110 (121)
101 PRK14737 gmk guanylate kinase; 99.2 1.3E-09 2.8E-14 91.8 14.9 165 61-260 2-185 (186)
102 PRK13477 bifunctional pantoate 99.2 9.6E-10 2.1E-14 105.3 15.7 40 62-101 283-322 (512)
103 cd01673 dNK Deoxyribonucleosid 99.2 6.1E-10 1.3E-14 93.9 12.8 118 65-188 1-146 (193)
104 PRK05480 uridine/cytidine kina 99.1 1E-09 2.2E-14 93.8 13.6 123 61-189 4-148 (209)
105 TIGR03263 guanyl_kin guanylate 99.1 7.4E-10 1.6E-14 92.2 11.5 163 63-258 1-179 (180)
106 PRK12338 hypothetical protein; 99.1 5.1E-09 1.1E-13 94.6 17.5 179 62-261 3-206 (319)
107 COG0283 Cmk Cytidylate kinase 99.1 3.3E-09 7.2E-14 89.9 14.8 38 64-101 5-42 (222)
108 PRK00889 adenylylsulfate kinas 99.1 1.8E-09 3.9E-14 89.7 12.9 108 62-184 3-117 (175)
109 COG2019 AdkA Archaeal adenylat 99.1 1.8E-08 3.8E-13 82.1 16.4 173 63-258 4-187 (189)
110 PRK05537 bifunctional sulfate 99.1 2.6E-09 5.6E-14 104.2 13.9 162 61-261 390-564 (568)
111 KOG3877 NADH:ubiquinone oxidor 99.0 1.8E-08 3.9E-13 88.1 16.2 179 61-256 69-294 (393)
112 PRK00023 cmk cytidylate kinase 99.0 2.1E-08 4.5E-13 87.0 16.3 38 63-100 4-41 (225)
113 COG0645 Predicted kinase [Gene 99.0 2.6E-08 5.6E-13 81.5 14.8 116 64-190 2-127 (170)
114 PRK09518 bifunctional cytidyla 99.0 1.3E-09 2.8E-14 109.2 8.7 38 64-101 2-39 (712)
115 TIGR00017 cmk cytidylate kinas 99.0 3.1E-08 6.8E-13 85.4 15.3 39 63-101 2-40 (217)
116 TIGR00455 apsK adenylylsulfate 99.0 1.1E-08 2.3E-13 85.8 12.0 107 61-183 16-132 (184)
117 TIGR00235 udk uridine kinase. 98.9 7.7E-09 1.7E-13 88.4 10.7 124 60-189 3-148 (207)
118 PF13238 AAA_18: AAA domain; P 98.9 5.8E-10 1.3E-14 87.0 3.3 112 66-189 1-114 (129)
119 PRK05416 glmZ(sRNA)-inactivati 98.9 7.6E-08 1.6E-12 86.3 17.1 149 62-259 5-160 (288)
120 COG1428 Deoxynucleoside kinase 98.9 2.6E-08 5.7E-13 84.3 12.8 30 63-92 4-33 (216)
121 PRK11860 bifunctional 3-phosph 98.9 4.1E-08 8.9E-13 97.7 15.9 40 62-101 441-480 (661)
122 PRK12269 bifunctional cytidyla 98.9 3.6E-08 7.9E-13 99.8 14.9 40 62-101 33-72 (863)
123 PRK12337 2-phosphoglycerate ki 98.9 2.2E-07 4.7E-12 87.7 18.5 40 62-102 254-294 (475)
124 TIGR01663 PNK-3'Pase polynucle 98.9 2.9E-08 6.3E-13 95.6 12.8 100 61-189 367-470 (526)
125 PRK04220 2-phosphoglycerate ki 98.9 1E-07 2.2E-12 85.5 15.5 179 62-260 91-291 (301)
126 PRK03846 adenylylsulfate kinas 98.9 4.5E-08 9.7E-13 83.1 12.5 105 60-183 21-138 (198)
127 COG4088 Predicted nucleotide k 98.8 9.4E-08 2E-12 80.6 13.4 161 63-258 1-172 (261)
128 PRK05506 bifunctional sulfate 98.8 3.8E-08 8.2E-13 97.6 12.8 160 61-260 458-629 (632)
129 cd02024 NRK1 Nicotinamide ribo 98.8 1.7E-08 3.8E-13 84.9 8.1 36 65-100 1-37 (187)
130 PRK07667 uridine kinase; Provi 98.8 2.9E-08 6.2E-13 84.0 9.1 122 62-188 16-160 (193)
131 PRK06696 uridine kinase; Valid 98.8 4.3E-08 9.4E-13 84.8 10.3 39 61-99 20-63 (223)
132 PF07931 CPT: Chloramphenicol 98.8 9.4E-08 2E-12 79.5 11.3 157 63-258 1-174 (174)
133 PLN02772 guanylate kinase 98.8 2.1E-07 4.5E-12 86.2 14.1 172 62-262 134-321 (398)
134 cd02027 APSK Adenosine 5'-phos 98.7 1.7E-07 3.7E-12 76.0 11.6 106 66-186 2-116 (149)
135 PF00625 Guanylate_kin: Guanyl 98.7 6E-08 1.3E-12 81.2 8.3 164 63-259 2-182 (183)
136 TIGR03575 selen_PSTK_euk L-ser 98.7 2.4E-07 5.1E-12 84.8 12.7 123 66-188 2-176 (340)
137 cd02023 UMPK Uridine monophosp 98.7 1.9E-07 4.2E-12 79.0 11.4 35 65-99 1-38 (198)
138 PF08433 KTI12: Chromatin asso 98.6 4.8E-07 1E-11 80.5 12.5 156 63-253 1-169 (270)
139 PF06414 Zeta_toxin: Zeta toxi 98.6 1.2E-07 2.6E-12 80.5 8.4 117 61-189 13-143 (199)
140 PHA03132 thymidine kinase; Pro 98.6 1E-06 2.2E-11 85.4 15.1 125 62-188 256-423 (580)
141 PF03668 ATP_bind_2: P-loop AT 98.6 1.7E-06 3.6E-11 76.8 15.3 147 64-259 2-156 (284)
142 PF01583 APS_kinase: Adenylyls 98.6 2.2E-07 4.8E-12 75.8 8.8 108 62-184 1-117 (156)
143 cd02019 NK Nucleoside/nucleoti 98.6 1.4E-07 3.1E-12 66.3 5.8 23 65-87 1-23 (69)
144 PRK09270 nucleoside triphospha 98.5 6.5E-07 1.4E-11 77.7 9.9 28 61-88 31-58 (229)
145 COG4639 Predicted kinase [Gene 98.5 2.3E-06 5E-11 69.2 12.1 111 64-187 3-117 (168)
146 COG0572 Udk Uridine kinase [Nu 98.5 6.8E-07 1.5E-11 76.5 9.4 124 61-189 6-150 (218)
147 PF01591 6PF2K: 6-phosphofruct 98.5 1.9E-06 4.2E-11 74.4 12.3 186 61-262 10-220 (222)
148 PTZ00301 uridine kinase; Provi 98.5 1.5E-06 3.2E-11 74.7 11.1 117 64-189 4-149 (210)
149 PRK07429 phosphoribulokinase; 98.5 6.3E-07 1.4E-11 81.9 9.0 39 60-98 5-46 (327)
150 COG2074 2-phosphoglycerate kin 98.4 1.6E-05 3.5E-10 69.1 15.7 176 61-260 87-288 (299)
151 cd02025 PanK Pantothenate kina 98.4 1.4E-06 3E-11 75.3 9.4 34 65-98 1-41 (220)
152 COG0529 CysC Adenylylsulfate k 98.4 3.5E-06 7.5E-11 69.6 10.0 110 60-184 20-138 (197)
153 COG3709 Uncharacterized compon 98.3 4E-05 8.6E-10 62.5 15.1 67 169-261 117-184 (192)
154 PHA00729 NTP-binding motif con 98.3 4E-06 8.6E-11 72.4 10.0 111 63-189 17-141 (226)
155 cd02028 UMPK_like Uridine mono 98.3 1E-06 2.2E-11 73.7 6.2 36 65-100 1-41 (179)
156 COG1660 Predicted P-loop-conta 98.3 7.4E-05 1.6E-09 65.2 16.8 149 64-260 2-158 (286)
157 PRK05439 pantothenate kinase; 98.3 3.4E-06 7.3E-11 76.4 8.6 39 61-99 84-129 (311)
158 PLN02348 phosphoribulokinase 98.2 2.9E-06 6.3E-11 78.7 7.2 28 61-88 47-74 (395)
159 PF00485 PRK: Phosphoribulokin 98.2 2.7E-06 5.8E-11 71.9 6.3 24 65-88 1-24 (194)
160 cd02026 PRK Phosphoribulokinas 98.2 6.8E-06 1.5E-10 73.3 8.0 34 65-98 1-37 (273)
161 PRK15453 phosphoribulokinase; 98.1 1.3E-05 2.8E-10 71.4 9.1 39 61-99 3-46 (290)
162 PRK05800 cobU adenosylcobinami 98.1 1.9E-06 4.2E-11 71.5 3.3 35 64-98 2-38 (170)
163 PRK09169 hypothetical protein; 98.1 3E-05 6.4E-10 83.7 11.5 108 63-187 2110-2220(2316)
164 TIGR00554 panK_bact pantothena 98.0 1.6E-05 3.4E-10 71.5 7.9 39 61-99 60-105 (290)
165 PRK06761 hypothetical protein; 98.0 0.00018 3.8E-09 64.4 14.0 33 63-95 3-35 (282)
166 PF00004 AAA: ATPase family as 98.0 4.7E-06 1E-10 64.9 3.3 29 66-94 1-29 (132)
167 PF13189 Cytidylate_kin2: Cyti 97.9 9.9E-05 2.2E-09 61.6 10.3 115 65-188 1-135 (179)
168 PTZ00322 6-phosphofructo-2-kin 97.9 4.3E-05 9.3E-10 76.3 9.5 32 63-94 215-246 (664)
169 PRK12724 flagellar biosynthesi 97.9 0.00012 2.7E-09 68.7 11.1 92 62-164 222-324 (432)
170 PLN02165 adenylate isopentenyl 97.9 1.5E-05 3.3E-10 72.6 4.6 38 60-97 40-77 (334)
171 cd00071 GMPK Guanosine monopho 97.8 3.7E-05 8E-10 61.4 5.8 23 66-88 2-24 (137)
172 PLN02318 phosphoribulokinase/u 97.8 0.00015 3.3E-09 70.5 10.8 37 62-98 64-101 (656)
173 PRK00091 miaA tRNA delta(2)-is 97.8 1.9E-05 4.2E-10 71.5 4.4 36 62-97 3-38 (307)
174 KOG0733 Nuclear AAA ATPase (VC 97.8 6.3E-05 1.4E-09 72.7 7.7 122 57-185 219-370 (802)
175 TIGR02640 gas_vesic_GvpN gas v 97.8 0.00029 6.2E-09 62.5 11.2 30 63-92 21-50 (262)
176 TIGR02881 spore_V_K stage V sp 97.8 0.0002 4.4E-09 63.3 10.2 27 61-87 40-66 (261)
177 PLN02840 tRNA dimethylallyltra 97.8 2.8E-05 6E-10 73.0 4.7 37 60-96 18-54 (421)
178 COG1618 Predicted nucleotide k 97.7 1.2E-05 2.6E-10 65.5 1.6 42 62-103 4-45 (179)
179 PHA03136 thymidine kinase; Pro 97.7 0.0019 4.1E-08 59.7 15.9 24 166-189 191-214 (378)
180 KOG3308 Uncharacterized protei 97.7 0.0012 2.6E-08 55.8 12.8 122 64-191 5-152 (225)
181 PF13521 AAA_28: AAA domain; P 97.7 2.3E-05 5.1E-10 64.1 2.6 27 65-92 1-27 (163)
182 cd02029 PRK_like Phosphoribulo 97.7 0.00017 3.7E-09 63.9 7.9 35 65-99 1-40 (277)
183 COG4185 Uncharacterized protei 97.6 0.0021 4.5E-08 52.5 12.9 150 63-243 2-157 (187)
184 smart00382 AAA ATPases associa 97.6 4.6E-05 9.9E-10 58.8 3.3 28 63-90 2-29 (148)
185 PLN02748 tRNA dimethylallyltra 97.6 7E-05 1.5E-09 71.4 5.1 36 61-96 20-55 (468)
186 PF13401 AAA_22: AAA domain; P 97.6 0.00025 5.4E-09 55.3 7.4 84 62-151 3-96 (131)
187 TIGR00390 hslU ATP-dependent p 97.6 5.5E-05 1.2E-09 70.9 3.9 35 62-96 46-80 (441)
188 CHL00181 cbbX CbbX; Provisiona 97.6 0.00028 6.1E-09 63.4 8.2 28 60-87 56-83 (287)
189 PF05496 RuvB_N: Holliday junc 97.5 8.6E-05 1.9E-09 64.0 4.0 32 62-93 49-80 (233)
190 TIGR00174 miaA tRNA isopenteny 97.5 6.9E-05 1.5E-09 67.2 3.5 32 65-96 1-32 (287)
191 PRK05201 hslU ATP-dependent pr 97.5 8.4E-05 1.8E-09 69.7 3.9 35 62-96 49-83 (443)
192 COG1072 CoaA Panthothenate kin 97.5 0.00012 2.6E-09 64.6 4.6 28 60-87 79-106 (283)
193 PHA02575 1 deoxynucleoside mon 97.5 0.00011 2.3E-09 63.3 4.2 39 64-103 1-40 (227)
194 KOG0730 AAA+-type ATPase [Post 97.5 0.0014 3E-08 64.0 12.0 34 61-94 466-499 (693)
195 PF07728 AAA_5: AAA domain (dy 97.5 9.3E-05 2E-09 58.7 3.2 28 66-93 2-29 (139)
196 CHL00195 ycf46 Ycf46; Provisio 97.5 0.00099 2.2E-08 64.2 10.8 32 63-94 259-290 (489)
197 PRK14974 cell division protein 97.4 0.00038 8.2E-09 63.9 6.9 27 61-87 138-164 (336)
198 TIGR00064 ftsY signal recognit 97.4 0.0018 4E-08 57.7 11.1 27 61-87 70-96 (272)
199 KOG0744 AAA+-type ATPase [Post 97.4 0.00011 2.5E-09 66.1 3.3 29 63-91 177-205 (423)
200 cd03115 SRP The signal recogni 97.4 0.0022 4.9E-08 52.8 10.6 31 65-95 2-37 (173)
201 TIGR03709 PPK2_rel_1 polyphosp 97.4 0.0079 1.7E-07 53.3 14.2 187 62-266 55-255 (264)
202 PRK00771 signal recognition pa 97.3 0.0014 3E-08 62.3 10.0 27 61-87 93-119 (437)
203 TIGR02880 cbbX_cfxQ probable R 97.3 0.00088 1.9E-08 60.1 8.3 26 62-87 57-82 (284)
204 smart00763 AAA_PrkA PrkA AAA d 97.3 0.0002 4.3E-09 66.0 3.8 28 62-89 77-104 (361)
205 TIGR03707 PPK2_P_aer polyphosp 97.3 0.012 2.6E-07 51.1 14.7 179 62-261 30-225 (230)
206 KOG0707 Guanylate kinase [Nucl 97.3 0.0036 7.9E-08 53.9 11.2 168 63-260 37-222 (231)
207 TIGR01650 PD_CobS cobaltochela 97.3 0.0002 4.3E-09 65.2 3.5 31 63-93 64-94 (327)
208 PRK08099 bifunctional DNA-bind 97.3 0.00028 6.1E-09 66.3 4.4 34 60-93 216-249 (399)
209 TIGR01425 SRP54_euk signal rec 97.3 0.002 4.4E-08 60.9 10.1 27 61-87 98-124 (429)
210 cd00009 AAA The AAA+ (ATPases 97.3 0.00031 6.7E-09 54.7 4.0 31 63-93 19-52 (151)
211 KOG0738 AAA+-type ATPase [Post 97.3 0.0014 3E-08 60.6 8.4 47 48-94 230-276 (491)
212 PF03266 NTPase_1: NTPase; In 97.3 0.00025 5.5E-09 58.7 3.5 23 65-87 1-23 (168)
213 COG1223 Predicted ATPase (AAA+ 97.3 0.0037 8.1E-08 55.0 10.7 32 63-94 151-182 (368)
214 PRK12377 putative replication 97.2 0.0047 1E-07 54.3 11.6 36 64-99 102-142 (248)
215 TIGR00150 HI0065_YjeE ATPase, 97.2 0.00036 7.7E-09 55.5 4.1 29 62-90 21-49 (133)
216 PRK09087 hypothetical protein; 97.2 0.0021 4.6E-08 55.7 9.3 37 63-99 44-80 (226)
217 TIGR00959 ffh signal recogniti 97.2 0.0043 9.3E-08 58.8 11.8 35 61-95 97-137 (428)
218 KOG3062 RNA polymerase II elon 97.2 0.0035 7.6E-08 53.9 9.8 25 63-87 1-25 (281)
219 PRK10867 signal recognition pa 97.2 0.0064 1.4E-07 57.7 12.4 35 61-95 98-138 (433)
220 PF08303 tRNA_lig_kinase: tRNA 97.2 0.0088 1.9E-07 49.1 11.5 33 66-98 2-35 (168)
221 COG0324 MiaA tRNA delta(2)-iso 97.2 0.00045 9.8E-09 62.3 4.3 37 62-98 2-38 (308)
222 cd00544 CobU Adenosylcobinamid 97.2 0.00091 2E-08 55.4 5.8 30 65-94 1-32 (169)
223 PF13173 AAA_14: AAA domain 97.2 0.00045 9.8E-09 54.2 3.8 37 63-99 2-42 (128)
224 PRK03992 proteasome-activating 97.1 0.00041 8.9E-09 65.0 4.0 38 62-99 164-203 (389)
225 TIGR01526 nadR_NMN_Atrans nico 97.1 0.00046 9.9E-09 63.2 4.2 30 63-92 162-191 (325)
226 PF13245 AAA_19: Part of AAA d 97.1 0.0005 1.1E-08 49.2 3.5 25 63-87 10-35 (76)
227 COG2256 MGS1 ATPase related to 97.1 0.00063 1.4E-08 63.0 5.0 33 62-94 47-79 (436)
228 PRK12723 flagellar biosynthesi 97.1 0.0021 4.5E-08 60.2 8.5 27 62-88 173-199 (388)
229 PRK05342 clpX ATP-dependent pr 97.1 0.00043 9.2E-09 65.3 3.8 33 63-95 108-140 (412)
230 PF01745 IPT: Isopentenyl tran 97.1 0.00039 8.5E-09 59.4 3.2 122 63-187 1-138 (233)
231 PRK10416 signal recognition pa 97.1 0.0014 3E-08 59.8 6.9 27 61-87 112-138 (318)
232 PLN00020 ribulose bisphosphate 97.1 0.0005 1.1E-08 63.5 3.8 38 62-99 147-186 (413)
233 KOG2004 Mitochondrial ATP-depe 97.1 0.00036 7.8E-09 68.6 3.0 39 61-99 436-476 (906)
234 PRK08116 hypothetical protein; 97.1 0.0082 1.8E-07 53.4 11.4 37 63-99 114-155 (268)
235 PRK05973 replicative DNA helic 97.1 0.001 2.2E-08 58.1 5.5 67 22-94 27-100 (237)
236 PRK06620 hypothetical protein; 97.1 0.002 4.2E-08 55.5 7.2 30 64-93 45-74 (214)
237 PLN02796 D-glycerate 3-kinase 97.0 0.00055 1.2E-08 62.8 3.7 37 62-98 99-140 (347)
238 TIGR01242 26Sp45 26S proteasom 97.0 0.00065 1.4E-08 63.0 4.3 32 63-94 156-187 (364)
239 COG0466 Lon ATP-dependent Lon 97.0 0.00054 1.2E-08 67.5 3.9 36 61-96 348-385 (782)
240 PTZ00454 26S protease regulato 97.0 0.00068 1.5E-08 63.7 4.2 33 62-94 178-210 (398)
241 TIGR00382 clpX endopeptidase C 97.0 0.00062 1.3E-08 64.1 3.8 32 63-94 116-147 (413)
242 TIGR00635 ruvB Holliday juncti 97.0 0.00079 1.7E-08 60.6 4.4 30 62-91 29-58 (305)
243 PF00448 SRP54: SRP54-type pro 97.0 0.00066 1.4E-08 57.6 3.7 26 63-88 1-26 (196)
244 PF05729 NACHT: NACHT domain 97.0 0.00071 1.5E-08 54.5 3.5 23 65-87 2-24 (166)
245 PRK04328 hypothetical protein; 97.0 0.0016 3.4E-08 57.3 5.8 33 62-94 22-59 (249)
246 TIGR03708 poly_P_AMP_trns poly 97.0 0.033 7.2E-07 53.6 15.1 177 61-260 38-233 (493)
247 TIGR03877 thermo_KaiC_1 KaiC d 96.9 0.0018 4E-08 56.4 6.1 34 62-95 20-58 (237)
248 PHA02244 ATPase-like protein 96.9 0.00065 1.4E-08 62.8 3.4 36 63-98 119-154 (383)
249 PF07726 AAA_3: ATPase family 96.9 0.00043 9.2E-09 54.6 1.8 29 65-93 1-29 (131)
250 PF10662 PduV-EutP: Ethanolami 96.9 0.0007 1.5E-08 54.4 3.0 24 63-86 1-24 (143)
251 COG1222 RPT1 ATP-dependent 26S 96.9 0.01 2.2E-07 54.4 10.6 46 63-108 185-232 (406)
252 TIGR01241 FtsH_fam ATP-depende 96.9 0.00088 1.9E-08 64.7 4.1 32 63-94 88-119 (495)
253 PF03215 Rad17: Rad17 cell cyc 96.9 0.001 2.2E-08 64.5 4.4 30 63-92 45-74 (519)
254 COG2255 RuvB Holliday junction 96.9 0.00091 2E-08 59.4 3.7 30 62-91 51-80 (332)
255 PRK07952 DNA replication prote 96.9 0.013 2.9E-07 51.4 11.0 36 64-99 100-140 (244)
256 PF06745 KaiC: KaiC; InterPro 96.9 0.0019 4E-08 55.7 5.6 34 62-95 18-57 (226)
257 COG3896 Chloramphenicol 3-O-ph 96.9 0.0084 1.8E-07 48.9 8.8 126 61-188 21-161 (205)
258 KOG1969 DNA replication checkp 96.9 0.0011 2.4E-08 65.4 4.4 41 54-94 317-357 (877)
259 PRK00080 ruvB Holliday junctio 96.9 0.0011 2.4E-08 60.5 4.2 30 63-92 51-80 (328)
260 PTZ00361 26 proteosome regulat 96.9 0.0011 2.3E-08 63.0 4.2 32 62-93 216-247 (438)
261 TIGR03420 DnaA_homol_Hda DnaA 96.9 0.001 2.2E-08 57.0 3.7 37 62-98 37-78 (226)
262 PRK04195 replication factor C 96.8 0.001 2.2E-08 64.1 3.9 32 63-94 39-70 (482)
263 PF00910 RNA_helicase: RNA hel 96.8 0.00085 1.9E-08 51.1 2.7 23 66-88 1-23 (107)
264 PLN03046 D-glycerate 3-kinase; 96.8 0.0011 2.4E-08 62.3 3.6 38 61-98 210-252 (460)
265 PRK08533 flagellar accessory p 96.8 0.0028 6.2E-08 55.1 6.1 25 62-86 23-47 (230)
266 PF03029 ATP_bind_1: Conserved 96.8 0.00075 1.6E-08 59.0 2.4 22 68-89 1-22 (238)
267 COG3911 Predicted ATPase [Gene 96.8 0.0012 2.7E-08 53.2 3.3 29 61-90 7-35 (183)
268 PRK13342 recombination factor 96.8 0.0013 2.9E-08 62.1 4.1 33 62-94 35-67 (413)
269 PRK11889 flhF flagellar biosyn 96.8 0.017 3.6E-07 54.2 11.2 26 62-87 240-265 (436)
270 PRK14729 miaA tRNA delta(2)-is 96.8 0.0015 3.2E-08 59.0 4.2 34 63-97 4-37 (300)
271 PF08477 Miro: Miro-like prote 96.8 0.0013 2.9E-08 50.2 3.4 23 65-87 1-23 (119)
272 TIGR02655 circ_KaiC circadian 96.8 0.0015 3.2E-08 63.0 4.4 87 62-151 262-362 (484)
273 PRK08903 DnaA regulatory inact 96.8 0.0016 3.4E-08 56.2 4.1 36 63-98 42-82 (227)
274 PRK06526 transposase; Provisio 96.7 0.0017 3.6E-08 57.4 4.2 38 62-99 97-139 (254)
275 TIGR03015 pepcterm_ATPase puta 96.7 0.0014 3.1E-08 57.6 3.6 26 63-88 43-68 (269)
276 COG1220 HslU ATP-dependent pro 96.7 0.0016 3.4E-08 59.2 3.8 32 62-93 49-80 (444)
277 COG1219 ClpX ATP-dependent pro 96.7 0.0015 3.3E-08 58.9 3.7 31 63-93 97-127 (408)
278 PRK10751 molybdopterin-guanine 96.7 0.0019 4.2E-08 53.6 4.1 27 62-88 5-31 (173)
279 PF01695 IstB_IS21: IstB-like 96.7 0.002 4.4E-08 53.7 4.2 39 62-100 46-89 (178)
280 KOG1533 Predicted GTPase [Gene 96.7 0.00092 2E-08 57.8 2.1 22 66-87 5-26 (290)
281 PF02367 UPF0079: Uncharacteri 96.7 0.0021 4.5E-08 50.5 3.9 29 62-90 14-42 (123)
282 CHL00176 ftsH cell division pr 96.7 0.0017 3.8E-08 64.5 4.3 32 63-94 216-247 (638)
283 KOG0739 AAA+-type ATPase [Post 96.7 0.0042 9.1E-08 55.7 6.2 55 48-102 151-207 (439)
284 KOG0635 Adenosine 5'-phosphosu 96.7 0.0076 1.6E-07 48.8 7.1 43 61-103 29-75 (207)
285 TIGR00101 ureG urease accessor 96.7 0.0018 3.9E-08 55.0 3.8 26 63-88 1-26 (199)
286 PRK12402 replication factor C 96.7 0.002 4.3E-08 58.6 4.3 35 64-98 37-78 (337)
287 PF06309 Torsin: Torsin; Inte 96.7 0.0026 5.7E-08 50.0 4.3 29 59-87 49-77 (127)
288 COG1484 DnaC DNA replication p 96.7 0.013 2.8E-07 51.8 9.2 39 62-100 104-147 (254)
289 PRK13695 putative NTPase; Prov 96.6 0.0017 3.8E-08 53.6 3.5 24 64-87 1-24 (174)
290 PRK08084 DNA replication initi 96.6 0.0017 3.7E-08 56.6 3.5 33 64-96 46-83 (235)
291 PRK06893 DNA replication initi 96.6 0.0021 4.5E-08 55.8 4.0 32 64-95 40-76 (229)
292 COG0541 Ffh Signal recognition 96.6 0.0069 1.5E-07 56.8 7.6 104 61-175 98-222 (451)
293 PRK06067 flagellar accessory p 96.6 0.0043 9.2E-08 53.8 6.0 35 61-95 23-62 (234)
294 cd01124 KaiC KaiC is a circadi 96.6 0.00096 2.1E-08 55.3 1.8 30 66-95 2-36 (187)
295 cd00820 PEPCK_HprK Phosphoenol 96.6 0.0021 4.5E-08 49.2 3.5 23 62-84 14-36 (107)
296 PF07724 AAA_2: AAA domain (Cd 96.6 0.0019 4.2E-08 53.6 3.4 26 64-89 4-29 (171)
297 cd01120 RecA-like_NTPases RecA 96.6 0.0016 3.5E-08 52.0 2.9 23 65-87 1-23 (165)
298 PF13191 AAA_16: AAA ATPase do 96.6 0.0018 3.9E-08 53.3 3.3 28 61-88 22-49 (185)
299 COG1126 GlnQ ABC-type polar am 96.6 0.0018 3.9E-08 55.5 3.2 24 61-84 26-49 (240)
300 KOG0731 AAA+-type ATPase conta 96.6 0.0015 3.2E-08 65.3 3.0 32 63-94 344-375 (774)
301 PRK09183 transposase/IS protei 96.6 0.0026 5.6E-08 56.4 4.3 38 61-98 100-142 (259)
302 KOG1532 GTPase XAB1, interacts 96.6 0.014 2.9E-07 51.9 8.4 44 58-101 14-62 (366)
303 PRK08181 transposase; Validate 96.6 0.0031 6.8E-08 56.2 4.6 39 62-100 105-148 (269)
304 PRK04296 thymidine kinase; Pro 96.6 0.0022 4.9E-08 54.0 3.5 25 63-87 2-26 (190)
305 COG1224 TIP49 DNA helicase TIP 96.5 0.0019 4.2E-08 59.0 3.3 42 62-103 64-109 (450)
306 PRK15455 PrkA family serine pr 96.5 0.002 4.3E-08 62.8 3.4 26 62-87 102-127 (644)
307 KOG0734 AAA+-type ATPase conta 96.5 0.0084 1.8E-07 57.6 7.4 32 63-94 337-368 (752)
308 PRK12323 DNA polymerase III su 96.5 0.018 3.9E-07 57.1 10.0 27 63-89 38-64 (700)
309 cd01131 PilT Pilus retraction 96.5 0.0023 5E-08 54.2 3.5 24 65-88 3-26 (198)
310 TIGR01243 CDC48 AAA family ATP 96.5 0.0024 5.2E-08 64.7 4.1 32 63-94 487-518 (733)
311 COG0464 SpoVK ATPases of the A 96.5 0.0023 4.9E-08 61.8 3.8 32 63-94 276-307 (494)
312 TIGR03689 pup_AAA proteasome A 96.5 0.0021 4.6E-08 62.1 3.5 28 63-90 216-243 (512)
313 PLN03025 replication factor C 96.5 0.0025 5.3E-08 58.1 3.8 26 63-88 34-59 (319)
314 COG0465 HflB ATP-dependent Zn 96.5 0.032 6.9E-07 54.7 11.5 124 62-185 182-329 (596)
315 PRK09435 membrane ATPase/prote 96.5 0.0028 6.1E-08 58.1 4.0 27 61-87 54-80 (332)
316 cd04163 Era Era subfamily. Er 96.5 0.0025 5.4E-08 50.7 3.2 24 63-86 3-26 (168)
317 PF06068 TIP49: TIP49 C-termin 96.5 0.0014 3.1E-08 60.4 1.9 38 62-99 49-90 (398)
318 TIGR00763 lon ATP-dependent pr 96.5 0.0026 5.6E-08 64.8 4.0 32 62-93 346-377 (775)
319 PF03976 PPK2: Polyphosphate k 96.5 0.022 4.7E-07 49.5 9.2 28 62-89 30-57 (228)
320 cd01918 HprK_C HprK/P, the bif 96.5 0.0033 7.3E-08 50.9 3.8 32 63-95 14-45 (149)
321 PF03308 ArgK: ArgK protein; 96.4 0.0029 6.3E-08 55.7 3.7 26 62-87 28-53 (266)
322 PRK14962 DNA polymerase III su 96.4 0.0028 6E-08 60.9 3.9 27 63-89 36-62 (472)
323 cd04155 Arl3 Arl3 subfamily. 96.4 0.0027 5.9E-08 51.7 3.3 25 62-86 13-37 (173)
324 PHA03134 thymidine kinase; Pro 96.4 0.33 7.1E-06 44.5 16.8 26 61-86 11-36 (340)
325 COG1855 ATPase (PilT family) [ 96.4 0.0025 5.3E-08 60.0 3.2 24 65-88 265-288 (604)
326 KOG0733 Nuclear AAA ATPase (VC 96.4 0.0024 5.2E-08 62.1 3.1 58 43-100 524-584 (802)
327 PRK14086 dnaA chromosomal repl 96.4 0.021 4.6E-07 56.3 9.7 36 66-101 317-359 (617)
328 COG5192 BMS1 GTP-binding prote 96.4 0.0027 5.9E-08 61.1 3.4 25 63-87 69-93 (1077)
329 TIGR01243 CDC48 AAA family ATP 96.4 0.003 6.5E-08 64.0 3.9 32 63-94 212-243 (733)
330 PF01926 MMR_HSR1: 50S ribosom 96.4 0.0029 6.3E-08 48.4 3.0 21 65-85 1-21 (116)
331 TIGR02237 recomb_radB DNA repa 96.4 0.0044 9.5E-08 52.6 4.4 36 61-96 10-50 (209)
332 KOG4235 Mitochondrial thymidin 96.4 0.33 7.1E-06 41.2 15.1 25 165-189 152-176 (244)
333 PRK14961 DNA polymerase III su 96.4 0.0035 7.7E-08 58.2 4.0 28 63-90 38-65 (363)
334 PRK13768 GTPase; Provisional 96.4 0.0034 7.5E-08 55.3 3.7 25 63-87 2-26 (253)
335 COG3839 MalK ABC-type sugar tr 96.4 0.0026 5.6E-08 58.3 3.0 32 62-96 28-59 (338)
336 cd01130 VirB11-like_ATPase Typ 96.4 0.0034 7.5E-08 52.5 3.5 27 62-88 24-50 (186)
337 TIGR02012 tigrfam_recA protein 96.4 0.006 1.3E-07 55.7 5.3 75 21-99 14-96 (321)
338 cd03116 MobB Molybdenum is an 96.4 0.0039 8.4E-08 51.2 3.7 25 64-88 2-26 (159)
339 KOG0780 Signal recognition par 96.3 0.03 6.5E-07 51.9 9.7 110 58-177 96-225 (483)
340 KOG0726 26S proteasome regulat 96.3 0.01 2.2E-07 53.1 6.5 52 54-107 212-265 (440)
341 PF01078 Mg_chelatase: Magnesi 96.3 0.0027 5.9E-08 54.1 2.8 25 63-87 22-46 (206)
342 PRK11034 clpA ATP-dependent Cl 96.3 0.0039 8.4E-08 63.2 4.3 33 61-93 485-518 (758)
343 PRK07003 DNA polymerase III su 96.3 0.013 2.8E-07 58.9 7.9 28 63-90 38-65 (830)
344 TIGR03499 FlhF flagellar biosy 96.3 0.0038 8.3E-08 55.9 3.9 26 62-87 193-218 (282)
345 PTZ00202 tuzin; Provisional 96.3 0.023 4.9E-07 54.0 9.0 28 63-90 286-313 (550)
346 COG0714 MoxR-like ATPases [Gen 96.3 0.0034 7.3E-08 57.4 3.5 32 62-93 42-73 (329)
347 KOG4622 Predicted nucleotide k 96.3 0.15 3.3E-06 43.1 12.9 37 65-101 3-45 (291)
348 KOG1970 Checkpoint RAD17-RFC c 96.3 0.0041 8.8E-08 59.8 4.0 31 62-92 109-139 (634)
349 PRK14722 flhF flagellar biosyn 96.3 0.0038 8.2E-08 58.1 3.8 27 61-87 135-161 (374)
350 PRK10787 DNA-binding ATP-depen 96.3 0.0039 8.4E-08 63.5 4.0 32 62-93 348-379 (784)
351 PF03205 MobB: Molybdopterin g 96.3 0.0041 8.8E-08 49.9 3.4 24 64-87 1-24 (140)
352 COG4619 ABC-type uncharacteriz 96.3 0.0038 8.3E-08 51.6 3.2 27 61-87 27-53 (223)
353 TIGR02655 circ_KaiC circadian 96.3 0.0093 2E-07 57.6 6.4 35 61-95 19-59 (484)
354 TIGR01618 phage_P_loop phage n 96.2 0.0033 7.1E-08 54.3 2.8 33 62-96 11-43 (220)
355 PF00005 ABC_tran: ABC transpo 96.2 0.0033 7.2E-08 49.4 2.7 26 62-87 10-35 (137)
356 KOG0736 Peroxisome assembly fa 96.2 0.0041 9E-08 61.9 3.8 72 23-94 656-736 (953)
357 PRK13341 recombination factor 96.2 0.0047 1E-07 62.3 4.3 34 62-95 51-84 (725)
358 KOG0741 AAA+-type ATPase [Post 96.2 0.047 1E-06 52.6 10.6 34 60-93 535-568 (744)
359 PRK07764 DNA polymerase III su 96.2 0.017 3.6E-07 59.2 8.2 28 63-90 37-64 (824)
360 cd00983 recA RecA is a bacter 96.2 0.011 2.3E-07 54.1 6.1 75 20-98 13-95 (325)
361 cd01394 radB RadB. The archaea 96.2 0.0061 1.3E-07 52.1 4.4 35 61-95 17-56 (218)
362 COG0378 HypB Ni2+-binding GTPa 96.2 0.0047 1E-07 52.0 3.4 24 64-87 14-37 (202)
363 KOG0737 AAA+-type ATPase [Post 96.2 0.0034 7.4E-08 57.6 2.8 47 48-94 110-158 (386)
364 PRK06645 DNA polymerase III su 96.2 0.0045 9.8E-08 59.9 3.8 29 63-91 43-71 (507)
365 COG4240 Predicted kinase [Gene 96.2 0.0056 1.2E-07 52.9 3.9 39 61-99 48-92 (300)
366 PRK11331 5-methylcytosine-spec 96.2 0.0038 8.2E-08 59.2 3.2 26 63-88 194-219 (459)
367 PRK06921 hypothetical protein; 96.2 0.0097 2.1E-07 52.9 5.7 38 62-99 116-159 (266)
368 PRK14956 DNA polymerase III su 96.2 0.0045 9.9E-08 59.2 3.8 28 63-90 40-67 (484)
369 TIGR00750 lao LAO/AO transport 96.2 0.0053 1.1E-07 55.5 4.0 27 61-87 32-58 (300)
370 smart00173 RAS Ras subfamily o 96.2 0.0046 9.9E-08 49.8 3.2 21 65-85 2-22 (164)
371 TIGR00073 hypB hydrogenase acc 96.2 0.0054 1.2E-07 52.2 3.8 27 62-88 21-47 (207)
372 COG0552 FtsY Signal recognitio 96.2 0.052 1.1E-06 49.5 10.1 99 61-163 137-242 (340)
373 PHA02544 44 clamp loader, smal 96.1 0.0051 1.1E-07 55.6 3.7 29 63-91 43-71 (316)
374 COG1136 SalX ABC-type antimicr 96.1 0.0049 1.1E-07 53.4 3.4 26 61-86 29-54 (226)
375 PF01443 Viral_helicase1: Vira 96.1 0.0035 7.6E-08 53.8 2.5 22 66-87 1-22 (234)
376 PF04665 Pox_A32: Poxvirus A32 96.1 0.0054 1.2E-07 53.7 3.6 26 62-87 12-37 (241)
377 KOG0743 AAA+-type ATPase [Post 96.1 0.0038 8.2E-08 58.7 2.8 29 66-94 238-266 (457)
378 CHL00206 ycf2 Ycf2; Provisiona 96.1 0.005 1.1E-07 66.8 4.1 37 63-99 1630-1668(2281)
379 cd04138 H_N_K_Ras_like H-Ras/N 96.1 0.0052 1.1E-07 49.0 3.3 22 64-85 2-23 (162)
380 TIGR01166 cbiO cobalt transpor 96.1 0.0052 1.1E-07 51.4 3.3 26 62-87 17-42 (190)
381 PRK14963 DNA polymerase III su 96.1 0.0052 1.1E-07 59.5 3.6 27 63-89 36-62 (504)
382 cd04119 RJL RJL (RabJ-Like) su 96.1 0.0052 1.1E-07 49.3 3.1 23 64-86 1-23 (168)
383 TIGR00176 mobB molybdopterin-g 96.1 0.0052 1.1E-07 50.2 3.1 22 66-87 2-23 (155)
384 cd04164 trmE TrmE (MnmE, ThdF, 96.1 0.0054 1.2E-07 48.5 3.2 24 63-86 1-24 (157)
385 PRK10646 ADP-binding protein; 96.1 0.0078 1.7E-07 49.0 4.1 28 62-89 27-54 (153)
386 TIGR02639 ClpA ATP-dependent C 96.1 0.0058 1.3E-07 61.9 4.1 38 60-97 480-520 (731)
387 PRK14952 DNA polymerase III su 96.1 0.034 7.4E-07 54.8 9.2 28 63-90 35-62 (584)
388 PHA02624 large T antigen; Prov 96.1 0.0067 1.5E-07 59.4 4.2 33 62-94 430-462 (647)
389 cd03292 ABC_FtsE_transporter F 96.1 0.0056 1.2E-07 52.1 3.4 26 62-87 26-51 (214)
390 cd04136 Rap_like Rap-like subf 96.0 0.0058 1.3E-07 49.0 3.3 22 64-85 2-23 (163)
391 PF13479 AAA_24: AAA domain 96.0 0.0043 9.2E-08 53.2 2.6 31 62-95 2-32 (213)
392 KOG0651 26S proteasome regulat 96.0 0.013 2.8E-07 52.9 5.6 39 63-101 166-206 (388)
393 smart00175 RAB Rab subfamily o 96.0 0.0055 1.2E-07 49.1 3.1 23 64-86 1-23 (164)
394 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.0 0.0058 1.3E-07 52.2 3.4 26 62-87 29-54 (218)
395 TIGR00960 3a0501s02 Type II (G 96.0 0.0058 1.3E-07 52.2 3.3 26 62-87 28-53 (216)
396 PRK05642 DNA replication initi 96.0 0.0073 1.6E-07 52.6 4.0 36 64-99 46-86 (234)
397 KOG1384 tRNA delta(2)-isopente 96.0 0.0055 1.2E-07 55.4 3.2 35 62-96 6-40 (348)
398 PRK06835 DNA replication prote 96.0 0.0066 1.4E-07 55.6 3.8 37 64-100 184-225 (329)
399 COG3842 PotA ABC-type spermidi 96.0 0.0048 1E-07 56.8 2.9 24 62-85 30-53 (352)
400 PF13086 AAA_11: AAA domain; P 96.0 0.0058 1.3E-07 51.9 3.2 23 65-87 19-41 (236)
401 PRK09354 recA recombinase A; P 96.0 0.015 3.1E-07 53.7 6.0 122 20-151 18-147 (349)
402 COG1703 ArgK Putative periplas 96.0 0.0066 1.4E-07 54.4 3.6 27 61-87 49-75 (323)
403 cd03301 ABC_MalK_N The N-termi 96.0 0.0065 1.4E-07 51.7 3.4 26 62-87 25-50 (213)
404 cd03225 ABC_cobalt_CbiO_domain 96.0 0.0065 1.4E-07 51.6 3.4 26 62-87 26-51 (211)
405 cd04139 RalA_RalB RalA/RalB su 96.0 0.0061 1.3E-07 48.8 3.1 21 65-85 2-22 (164)
406 COG0467 RAD55 RecA-superfamily 96.0 0.0041 9E-08 54.8 2.2 34 61-94 21-59 (260)
407 KOG0735 AAA+-type ATPase [Post 96.0 0.017 3.6E-07 57.3 6.5 55 48-102 685-742 (952)
408 PF00308 Bac_DnaA: Bacterial d 96.0 0.023 5E-07 49.0 6.8 36 65-100 36-78 (219)
409 TIGR02673 FtsE cell division A 96.0 0.0065 1.4E-07 51.7 3.3 26 62-87 27-52 (214)
410 cd03264 ABC_drug_resistance_li 96.0 0.006 1.3E-07 51.9 3.1 25 62-87 25-49 (211)
411 PRK09302 circadian clock prote 96.0 0.012 2.6E-07 57.1 5.6 34 62-95 272-310 (509)
412 PRK06731 flhF flagellar biosyn 96.0 0.098 2.1E-06 46.6 10.9 26 62-87 74-99 (270)
413 cd00876 Ras Ras family. The R 96.0 0.0054 1.2E-07 48.8 2.7 21 65-85 1-21 (160)
414 cd03269 ABC_putative_ATPase Th 95.9 0.0068 1.5E-07 51.5 3.4 26 62-87 25-50 (210)
415 TIGR03881 KaiC_arch_4 KaiC dom 95.9 0.0041 8.8E-08 53.6 2.0 26 61-86 18-43 (229)
416 cd03263 ABC_subfamily_A The AB 95.9 0.0068 1.5E-07 51.8 3.4 26 62-87 27-52 (220)
417 cd03219 ABC_Mj1267_LivG_branch 95.9 0.0062 1.4E-07 52.7 3.2 26 62-87 25-50 (236)
418 cd04177 RSR1 RSR1 subgroup. R 95.9 0.0069 1.5E-07 49.2 3.3 22 64-85 2-23 (168)
419 cd03262 ABC_HisP_GlnQ_permease 95.9 0.007 1.5E-07 51.5 3.4 26 62-87 25-50 (213)
420 cd03224 ABC_TM1139_LivF_branch 95.9 0.0069 1.5E-07 51.8 3.4 27 61-87 24-50 (222)
421 PF13555 AAA_29: P-loop contai 95.9 0.0091 2E-07 41.0 3.3 23 63-85 23-45 (62)
422 cd03256 ABC_PhnC_transporter A 95.9 0.0068 1.5E-07 52.5 3.4 27 61-87 25-51 (241)
423 cd01123 Rad51_DMC1_radA Rad51_ 95.9 0.0086 1.9E-07 51.7 4.0 27 60-86 16-42 (235)
424 TIGR03608 L_ocin_972_ABC putat 95.9 0.0069 1.5E-07 51.2 3.3 26 62-87 23-48 (206)
425 cd00157 Rho Rho (Ras homology) 95.9 0.0068 1.5E-07 49.0 3.1 23 64-86 1-23 (171)
426 COG1127 Ttg2A ABC-type transpo 95.9 0.057 1.2E-06 47.1 8.8 91 61-154 32-145 (263)
427 cd01983 Fer4_NifH The Fer4_Nif 95.9 0.0074 1.6E-07 43.7 3.1 22 66-87 2-23 (99)
428 cd03261 ABC_Org_Solvent_Resist 95.9 0.007 1.5E-07 52.4 3.4 26 62-87 25-50 (235)
429 cd03259 ABC_Carb_Solutes_like 95.9 0.0072 1.6E-07 51.5 3.4 26 62-87 25-50 (213)
430 cd03229 ABC_Class3 This class 95.9 0.0076 1.6E-07 50.0 3.4 26 62-87 25-50 (178)
431 PRK14490 putative bifunctional 95.9 0.0071 1.5E-07 56.3 3.5 28 62-89 4-31 (369)
432 PRK14949 DNA polymerase III su 95.9 0.0073 1.6E-07 61.7 3.8 28 63-90 38-65 (944)
433 PRK11784 tRNA 2-selenouridine 95.9 0.042 9.1E-07 50.7 8.5 113 63-188 141-257 (345)
434 cd03260 ABC_PstB_phosphate_tra 95.9 0.0077 1.7E-07 51.8 3.6 26 62-87 25-50 (227)
435 PRK07940 DNA polymerase III su 95.9 0.11 2.4E-06 48.8 11.5 29 62-90 35-63 (394)
436 TIGR02211 LolD_lipo_ex lipopro 95.9 0.0074 1.6E-07 51.6 3.4 26 62-87 30-55 (221)
437 TIGR01223 Pmev_kin_anim phosph 95.9 0.097 2.1E-06 43.6 9.8 111 65-184 1-132 (182)
438 cd00154 Rab Rab family. Rab G 95.9 0.0066 1.4E-07 47.8 2.9 22 64-85 1-22 (159)
439 PRK09361 radB DNA repair and r 95.9 0.011 2.4E-07 50.8 4.5 35 61-95 21-60 (225)
440 cd03258 ABC_MetN_methionine_tr 95.9 0.0074 1.6E-07 52.1 3.4 27 61-87 29-55 (233)
441 cd04113 Rab4 Rab4 subfamily. 95.9 0.0072 1.6E-07 48.5 3.1 22 64-85 1-22 (161)
442 TIGR00231 small_GTP small GTP- 95.9 0.0079 1.7E-07 47.0 3.3 23 64-86 2-24 (161)
443 PRK10733 hflB ATP-dependent me 95.9 0.007 1.5E-07 60.4 3.6 30 65-94 187-216 (644)
444 cd01862 Rab7 Rab7 subfamily. 95.9 0.0068 1.5E-07 49.1 2.9 23 64-86 1-23 (172)
445 PRK14957 DNA polymerase III su 95.9 0.008 1.7E-07 58.7 3.9 27 63-89 38-64 (546)
446 PF00025 Arf: ADP-ribosylation 95.9 0.008 1.7E-07 49.7 3.4 25 61-85 12-36 (175)
447 KOG0991 Replication factor C, 95.9 0.0074 1.6E-07 52.4 3.2 26 62-87 47-72 (333)
448 TIGR02315 ABC_phnC phosphonate 95.9 0.0076 1.6E-07 52.4 3.4 27 61-87 26-52 (243)
449 cd03226 ABC_cobalt_CbiO_domain 95.9 0.0076 1.6E-07 51.0 3.3 26 62-87 25-50 (205)
450 PRK14964 DNA polymerase III su 95.9 0.0078 1.7E-07 58.0 3.7 28 63-90 35-62 (491)
451 PRK13541 cytochrome c biogenes 95.9 0.008 1.7E-07 50.6 3.4 26 62-87 25-50 (195)
452 PRK14955 DNA polymerase III su 95.8 0.0082 1.8E-07 56.4 3.8 28 63-90 38-65 (397)
453 cd03247 ABCC_cytochrome_bd The 95.8 0.0081 1.8E-07 49.8 3.4 26 62-87 27-52 (178)
454 cd03230 ABC_DR_subfamily_A Thi 95.8 0.0082 1.8E-07 49.5 3.4 26 62-87 25-50 (173)
455 COG1116 TauB ABC-type nitrate/ 95.8 0.008 1.7E-07 52.5 3.4 27 61-87 27-53 (248)
456 PRK10463 hydrogenase nickel in 95.8 0.009 2E-07 53.6 3.8 25 63-87 104-128 (290)
457 PF00437 T2SE: Type II/IV secr 95.8 0.0085 1.8E-07 53.0 3.6 26 63-88 127-152 (270)
458 PRK14493 putative bifunctional 95.8 0.0085 1.8E-07 53.5 3.6 24 64-87 2-25 (274)
459 cd03296 ABC_CysA_sulfate_impor 95.8 0.0079 1.7E-07 52.2 3.4 26 62-87 27-52 (239)
460 TIGR03598 GTPase_YsxC ribosome 95.8 0.0078 1.7E-07 49.7 3.2 28 59-86 14-41 (179)
461 TIGR02928 orc1/cdc6 family rep 95.8 0.008 1.7E-07 55.4 3.6 26 62-87 39-64 (365)
462 cd03293 ABC_NrtD_SsuB_transpor 95.8 0.0077 1.7E-07 51.6 3.2 26 62-87 29-54 (220)
463 cd03232 ABC_PDR_domain2 The pl 95.8 0.008 1.7E-07 50.5 3.3 25 62-86 32-56 (192)
464 cd03235 ABC_Metallic_Cations A 95.8 0.0074 1.6E-07 51.4 3.1 26 62-87 24-49 (213)
465 cd01128 rho_factor Transcripti 95.8 0.0087 1.9E-07 52.7 3.6 29 61-89 14-42 (249)
466 PRK11629 lolD lipoprotein tran 95.8 0.0082 1.8E-07 51.9 3.4 26 62-87 34-59 (233)
467 TIGR03878 thermo_KaiC_2 KaiC d 95.8 0.0095 2.1E-07 52.7 3.8 33 62-94 35-72 (259)
468 COG2812 DnaX DNA polymerase II 95.8 0.028 6.1E-07 54.3 7.2 28 64-91 39-66 (515)
469 cd03257 ABC_NikE_OppD_transpor 95.8 0.008 1.7E-07 51.6 3.3 27 61-87 29-55 (228)
470 cd04137 RheB Rheb (Ras Homolog 95.8 0.0083 1.8E-07 49.2 3.2 22 64-85 2-23 (180)
471 PRK14951 DNA polymerase III su 95.8 0.082 1.8E-06 52.5 10.6 28 63-90 38-65 (618)
472 cd03246 ABCC_Protease_Secretio 95.8 0.009 2E-07 49.3 3.4 27 61-87 26-52 (173)
473 PRK14960 DNA polymerase III su 95.8 0.0092 2E-07 59.2 4.0 28 63-90 37-64 (702)
474 cd03265 ABC_DrrA DrrA is the A 95.8 0.0086 1.9E-07 51.3 3.4 26 62-87 25-50 (220)
475 TIGR03708 poly_P_AMP_trns poly 95.8 0.9 2E-05 43.9 17.4 33 61-93 297-329 (493)
476 cd03223 ABCD_peroxisomal_ALDP 95.8 0.009 1.9E-07 49.1 3.4 26 62-87 26-51 (166)
477 PRK11264 putative amino-acid A 95.8 0.0085 1.8E-07 52.3 3.4 26 62-87 28-53 (250)
478 TIGR03864 PQQ_ABC_ATP ABC tran 95.8 0.0086 1.9E-07 51.9 3.4 26 62-87 26-51 (236)
479 cd01895 EngA2 EngA2 subfamily. 95.8 0.008 1.7E-07 48.3 3.0 24 63-86 2-25 (174)
480 COG1124 DppF ABC-type dipeptid 95.8 0.0086 1.9E-07 52.1 3.3 26 62-87 32-57 (252)
481 COG0802 Predicted ATPase or ki 95.8 0.012 2.6E-07 47.5 3.9 29 61-89 23-51 (149)
482 TIGR03410 urea_trans_UrtE urea 95.8 0.0084 1.8E-07 51.7 3.3 26 62-87 25-50 (230)
483 PRK00149 dnaA chromosomal repl 95.8 0.056 1.2E-06 51.6 9.2 36 65-100 150-192 (450)
484 PRK00411 cdc6 cell division co 95.8 0.0091 2E-07 55.7 3.8 26 62-87 54-79 (394)
485 TIGR02323 CP_lyasePhnK phospho 95.8 0.0082 1.8E-07 52.5 3.3 26 62-87 28-53 (253)
486 cd03268 ABC_BcrA_bacitracin_re 95.8 0.009 2E-07 50.7 3.4 27 61-87 24-50 (208)
487 cd03218 ABC_YhbG The ABC trans 95.8 0.0089 1.9E-07 51.6 3.4 26 62-87 25-50 (232)
488 PRK14250 phosphate ABC transpo 95.8 0.0087 1.9E-07 52.1 3.4 26 62-87 28-53 (241)
489 cd03215 ABC_Carb_Monos_II This 95.8 0.0088 1.9E-07 49.8 3.3 26 62-87 25-50 (182)
490 PRK13540 cytochrome c biogenes 95.8 0.0092 2E-07 50.4 3.4 27 61-87 25-51 (200)
491 COG1419 FlhF Flagellar GTP-bin 95.8 0.021 4.6E-07 53.3 6.0 34 62-95 202-242 (407)
492 PRK09111 DNA polymerase III su 95.8 0.045 9.9E-07 54.1 8.7 29 63-91 46-74 (598)
493 cd03214 ABC_Iron-Siderophores_ 95.8 0.0095 2.1E-07 49.5 3.4 27 61-87 23-49 (180)
494 PRK10247 putative ABC transpor 95.8 0.0091 2E-07 51.4 3.4 26 62-87 32-57 (225)
495 cd00879 Sar1 Sar1 subfamily. 95.8 0.009 1.9E-07 49.6 3.3 24 62-85 18-41 (190)
496 PRK15177 Vi polysaccharide exp 95.7 0.009 1.9E-07 51.2 3.3 26 62-87 12-37 (213)
497 cd03222 ABC_RNaseL_inhibitor T 95.7 0.0088 1.9E-07 49.9 3.2 27 61-87 23-49 (177)
498 COG1122 CbiO ABC-type cobalt t 95.7 0.0085 1.8E-07 52.3 3.2 27 61-87 28-54 (235)
499 TIGR02782 TrbB_P P-type conjug 95.7 0.0092 2E-07 54.0 3.5 25 63-87 132-156 (299)
500 TIGR02236 recomb_radA DNA repa 95.7 0.01 2.2E-07 53.7 3.8 25 62-86 94-118 (310)
No 1
>PLN02459 probable adenylate kinase
Probab=100.00 E-value=3.4e-43 Score=307.23 Aligned_cols=203 Identities=46% Similarity=0.755 Sum_probs=187.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccC
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~ 141 (273)
++++|+|+|||||||||+|+.|+++||++||++++++|+++..++++|+.+++++.+|.++|++++..++.++|......
T Consensus 28 ~~~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~t~lg~~i~~~~~~G~lVPdeiv~~ll~~~l~~~~~~ 107 (261)
T PLN02459 28 RNVNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIVNQGKLVPDEIIFSLLSKRLEAGEEE 107 (261)
T ss_pred CccEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhccchhHHHHHHHHHcCCccCHHHHHHHHHHHHhccccc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999864222
Q ss_pred CcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCC--------------CC----
Q 024067 142 GESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGG--------------AR---- 203 (273)
Q Consensus 142 ~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~--------------~~---- 203 (273)
...|||||||||+..|++.|+....++.||+|+++++++++|+.+|+.|+.||+.||... +|
T Consensus 108 ~~~g~iLDGFPRt~~Qa~~Le~~~~id~Vi~L~v~d~~l~~Rl~gR~~~~~~g~~Yn~~~~~~~~~~~~~~~~~~p~~~~ 187 (261)
T PLN02459 108 GESGFILDGFPRTVRQAEILEGVTDIDLVVNLKLREEVLVEKCLGRRICSECGKNFNVADIDLKGEDGRPGIVMPPLLPP 187 (261)
T ss_pred CCceEEEeCCCCCHHHHHHHHhcCCCCEEEEEECCHHHHHHHhhccccccccCccccccccccccccccccccCCCCCCC
Confidence 468999999999999999999888899999999999999999999999999999999742 11
Q ss_pred --------CCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhcCCCC
Q 024067 204 --------FSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQHMNA 264 (273)
Q Consensus 204 --------~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~~~~~ 264 (273)
.+.||+++.+++|++.|+++..|+++||+++++++.||+++++++||++|.+.|...|.+.
T Consensus 188 ~~~~~~L~~R~DD~~e~i~kRL~~Y~~~t~pv~~~Y~~~g~l~~id~~~~~~eV~~~i~~~l~~~~~~~ 256 (261)
T PLN02459 188 PECASKLITRADDTEEVVKARLRVYKEESQPVEDFYRKRGKLLEFELPGGIPETWPRLLQALNLDDEDK 256 (261)
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCeEEEeCCCCHHHHHHHHHHHhchhhhhh
Confidence 2578999999999999999999999999999999999999999999999999999988754
No 2
>PLN02674 adenylate kinase
Probab=100.00 E-value=9.4e-43 Score=303.07 Aligned_cols=193 Identities=25% Similarity=0.412 Sum_probs=180.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCC
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRG 142 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~ 142 (273)
.++|+|+|||||||||+|++|+++||++|||+|+++|+++..++++|+.+++++.+|+++|++++..++.+++....+
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~~g~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~-- 108 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSC-- 108 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccChhhHHHHHHHHcCCccCHHHHHHHHHHHHhCcCc--
Confidence 468999999999999999999999999999999999999999999999999999999999999999999999987644
Q ss_pred cceEEEeCCCCCHHHHHHHHhh-----CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCC-------------
Q 024067 143 ESGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARF------------- 204 (273)
Q Consensus 143 ~~g~IlDg~P~~~~qa~~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~------------- 204 (273)
..|||||||||+..|++.|+.. ..+|.||+|++|++++++|+.+|..|+.||+.||..+.|+
T Consensus 109 ~~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR~~~~~~g~~yn~~~~pp~~~~~~~~~g~~L 188 (244)
T PLN02674 109 QKGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPL 188 (244)
T ss_pred CCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhccccccccCCccccccCCCcccCcccccCCcc
Confidence 5899999999999999998764 4699999999999999999999999999999999876554
Q ss_pred --CCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHH
Q 024067 205 --SAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSAL 257 (273)
Q Consensus 205 --~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l 257 (273)
+.||+++.+++|++.|++...|+.+||++.++++.||+++++++|++.|...|
T Consensus 189 ~~R~DD~~e~i~~RL~~Y~~~t~pv~~~Y~~~g~l~~Ida~~~~~eV~~~i~~~l 243 (244)
T PLN02674 189 IQRKDDTAAVLKSRLEAFHKQTEPVIDYYAKKGVVANLHAEKPPKEVTAEVQKAL 243 (244)
T ss_pred ccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence 47889999999999999999999999999999999999999999999999876
No 3
>PRK14526 adenylate kinase; Provisional
Probab=100.00 E-value=7.6e-40 Score=280.57 Aligned_cols=196 Identities=28% Similarity=0.405 Sum_probs=181.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCCc
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE 143 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~~ 143 (273)
++|+|+|+|||||||+++.|++.++++|+++|+++++++..+++.|..+++++.+|.++|++++..++.++|....+ .
T Consensus 1 m~i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~~t~~g~~i~~~~~~g~lvpd~~~~~lv~~~l~~~~~--~ 78 (211)
T PRK14526 1 MKLVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVENGQLVPDSITIKIVEDKINTIKN--N 78 (211)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHhcccCChhhHHHHHHHHcCccCChHHHHHHHHHHHhcccc--c
Confidence 36889999999999999999999999999999999999999999999999999999999999999999999987533 5
Q ss_pred ceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCC---------------CCCC
Q 024067 144 SGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARF---------------SAAD 208 (273)
Q Consensus 144 ~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~---------------~~~d 208 (273)
.|||||||||+..|++.|+.......+|+|+++++++++|+.+|..|+.||+.||..+.|+ +.||
T Consensus 79 ~g~ilDGfPR~~~Qa~~l~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~R~DD 158 (211)
T PRK14526 79 DNFILDGFPRNINQAKALDKFLPNIKIINFLIDEELLIKRLSGRRICKSCNNIFNIYTLPTKEKGICDVCKGDLYQRKDD 158 (211)
T ss_pred CcEEEECCCCCHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHCCCcccccCCccccccCCCCccCcCCCCCCeeeccCCC
Confidence 8999999999999999998765555788999999999999999999999999999766543 5788
Q ss_pred cHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhcC
Q 024067 209 AASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQH 261 (273)
Q Consensus 209 ~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~~ 261 (273)
+++.+++|++.|++...|+.+||++.++++.||+++++++|+++|.+.|..++
T Consensus 159 ~~e~i~~Rl~~y~~~t~pv~~~y~~~~~~~~id~~~~~~~V~~~i~~~l~~~~ 211 (211)
T PRK14526 159 KEESLKTRLQEYKLQTKPLIEFYSKCNRLNNIDASKDIDEVKKKLIEIISKKN 211 (211)
T ss_pred CHHHHHHHHHHHHHhhhHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHcccC
Confidence 99999999999999999999999999999999999999999999999998764
No 4
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=2.3e-39 Score=264.60 Aligned_cols=186 Identities=23% Similarity=0.435 Sum_probs=171.7
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccC-CChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhc
Q 024067 60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSP-RSALYKQIANAVNEGKLVPEDVIFALLSKRLEEG 138 (273)
Q Consensus 60 ~~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~-~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~ 138 (273)
+..+++|+++|+|||||.|+|.+++++||+.|+|+|||||++... +++.|..|++++.+|.++|.+++..+|.++|.+.
T Consensus 5 ~~~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~gse~g~~I~~~i~~G~iVP~ei~~~LL~~am~~~ 84 (195)
T KOG3079|consen 5 LDKPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASAGSERGALIKEIIKNGDLVPVEITLSLLEEAMRSS 84 (195)
T ss_pred ccCCCEEEEEcCCCCCcchHHHHHHHHcCceeecHHHHHHHHHccccChHHHHHHHHHHcCCcCcHHHHHHHHHHHHHhc
Confidence 457889999999999999999999999999999999999999986 9999999999999999999999999999999875
Q ss_pred ccCCcceEEEeCCCCCHHHHHHHHhhC--CCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHH
Q 024067 139 YYRGESGFILDGIPRTRIQAEILDQIV--DVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEK 216 (273)
Q Consensus 139 ~~~~~~g~IlDg~P~~~~qa~~l~~~~--~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~r 216 (273)
...++|+||||||+..|...|+... .++++++|+|++|++++|++.|.... .+.||+.+.+++|
T Consensus 85 --~~~~~fLIDGyPR~~~q~~~fe~~i~~~~~fvl~fdc~ee~~l~Rll~R~q~~------------~R~DDn~esikkR 150 (195)
T KOG3079|consen 85 --GDSNGFLIDGYPRNVDQLVEFERKIQGDPDFVLFFDCPEETMLKRLLHRGQSN------------SRSDDNEESIKKR 150 (195)
T ss_pred --CCCCeEEecCCCCChHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhhcccC------------CCCCCchHHHHHH
Confidence 3346699999999999999998654 68999999999999999999998632 2679999999999
Q ss_pred HHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHh
Q 024067 217 FRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHL 259 (273)
Q Consensus 217 l~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~ 259 (273)
+..|.+...|+++||++.++++.||++.++++|+.++...+..
T Consensus 151 ~et~~~~t~Pvi~~~e~kg~l~~i~a~~~~d~Vf~~v~~~id~ 193 (195)
T KOG3079|consen 151 LETYNKSTLPVIEYYEKKGKLLKINAERSVDDVFEEVVTAIDA 193 (195)
T ss_pred HHHHHHcchHHHHHHHccCcEEEecCCCCHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999988764
No 5
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=100.00 E-value=4.6e-39 Score=276.00 Aligned_cols=192 Identities=32% Similarity=0.536 Sum_probs=177.6
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCCcc
Q 024067 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGES 144 (273)
Q Consensus 65 ~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~~~ 144 (273)
+|+|+|+|||||||+|+.|+++||++||++++++|+++...++++..+++++.+|..+|++++..++.+++.+..+ ...
T Consensus 1 rI~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~g~~vp~~~~~~l~~~~i~~~~~-~~~ 79 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPDEIVNQLVKERLTQNQD-NEN 79 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhccccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcc-cCC
Confidence 4889999999999999999999999999999999999998899999999999999999999999999999987322 257
Q ss_pred eEEEeCCCCCHHHHHHHHhhC--CCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCC---------------CCC
Q 024067 145 GFILDGIPRTRIQAEILDQIV--DVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARF---------------SAA 207 (273)
Q Consensus 145 g~IlDg~P~~~~qa~~l~~~~--~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~---------------~~~ 207 (273)
||||||||++..|++.|+... .|+++|+|++|++++++|+.+|..|+.||+.||..+.++ +.|
T Consensus 80 ~~ilDGfPrt~~Qa~~l~~~~~~~~~~vi~L~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~~p~~~~~~~~~~~~l~~R~d 159 (210)
T TIGR01351 80 GFILDGFPRTLSQAEALDALLKEKIDAVIELDVPDEELVERLSGRRICPSCGRVYHLKFNPPKVPGCDDCTGELLIQRED 159 (210)
T ss_pred cEEEeCCCCCHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHCCCccCCcCCccccccCCCccCCcCcccCCccccCCC
Confidence 999999999999999998765 589999999999999999999999999999999765442 567
Q ss_pred CcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHH
Q 024067 208 DAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSAL 257 (273)
Q Consensus 208 d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l 257 (273)
|+++.+++|++.|+++..++.+||++.++++.||+++++++||+.|.+.|
T Consensus 160 D~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l 209 (210)
T TIGR01351 160 DTEEVVKKRLEVYKEQTEPLIDYYKKRGILVQIDGNGPIDEVWKRILEAL 209 (210)
T ss_pred CCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHhh
Confidence 89999999999999999999999999999999999999999999999876
No 6
>PRK14529 adenylate kinase; Provisional
Probab=100.00 E-value=2.6e-39 Score=278.33 Aligned_cols=191 Identities=21% Similarity=0.359 Sum_probs=171.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCCc
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE 143 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~~ 143 (273)
++|+|+|||||||||+|+.|+++|+++|||+++++|+++..++++++.+++++.+|.++|++++..++.+++.... .
T Consensus 1 m~I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~lg~~i~~~i~~G~lvpdei~~~lv~~~l~~~~---~ 77 (223)
T PRK14529 1 MNILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVPDDITIPMILETLKQDG---K 77 (223)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChHHHHHHHHHhccCcchHHHHHHHHHHHHhccC---C
Confidence 4689999999999999999999999999999999999999899999999999999999999999999999998752 6
Q ss_pred ceEEEeCCCCCHHHHHHHHhh-----CCCceEEEEccCHHHHHHHHhcCCcCCCccccc-ccCCCCC-------------
Q 024067 144 SGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFL-RLGGARF------------- 204 (273)
Q Consensus 144 ~g~IlDg~P~~~~qa~~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y-~~~~~~~------------- 204 (273)
.|||||||||+..|++.|+.. ..||.||+|++|++++.+|+.+|+.|+.||+.| +..+.|+
T Consensus 78 ~g~iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R~~c~~~~~~~~~~~~~~p~~~~~~cd~~~~~ 157 (223)
T PRK14529 78 NGWLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRIMGRRLCKNDNNHPNNIFIDAIKPDGDVCRVCGGE 157 (223)
T ss_pred CcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCCccccccCCcccccccCCCcccCCcCcCcCCc
Confidence 899999999999999998754 469999999999999999999999999888655 3433321
Q ss_pred ---CCCCc-HHHHHHHHHHHHHh---hHHHHHHHHh-----cCcEEEEeCCCChhHHHHHHHHHH
Q 024067 205 ---SAADA-ASAWKEKFRIYAEQ---GKSLEDYYSK-----QRKLLNFQVAAAPGETWQGLLSAL 257 (273)
Q Consensus 205 ---~~~d~-~e~~~~rl~~y~~~---~~~l~~~y~~-----~~~~~~id~~~s~~ev~~~I~~~l 257 (273)
+.||+ +|.+++|++.|+++ ..++.+||++ .++++.||+++++++|+++|...|
T Consensus 158 l~~R~DD~~ee~i~~Rl~~y~~~~~~~~~~~~~y~~~~~~~~~~~~~id~~~~~~~V~~~i~~~l 222 (223)
T PRK14529 158 LSTRADDQDEEAINKRHDIYYDTETGTLAAAYFFKDLAAKGSTKYIELDGEGSIDEIKETLLKQL 222 (223)
T ss_pred cccCCCCCcHHHHHHHHHHHHHcccccchHHHHHhhcccccCCeEEEEECCCCHHHHHHHHHHHh
Confidence 56785 78999999999987 4578899996 678999999999999999999876
No 7
>PTZ00088 adenylate kinase 1; Provisional
Probab=100.00 E-value=5.5e-39 Score=278.26 Aligned_cols=196 Identities=24% Similarity=0.442 Sum_probs=178.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccC
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~ 141 (273)
.+++|+|+|||||||||+|+.||++||++||++|+++|+++..++++|+.+++++.+|.++|++++..++.+++......
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~~~t~lg~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~~ 84 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTSGNLVPDNLVIAIVKDEIAKVTDD 84 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCcEEECChHHHHHhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhhccc
Confidence 46789999999999999999999999999999999999999888999999999999999999999999999999862002
Q ss_pred CcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCC-------CC-----------
Q 024067 142 GESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGG-------AR----------- 203 (273)
Q Consensus 142 ~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~-------~~----------- 203 (273)
...||||||||++..|+..|+....|++||+|+++++++++|+.+|+.|+.||+.||... .|
T Consensus 85 ~~~g~iLDGfPRt~~Qa~~l~~~~~~~~vi~l~~~~~~~~~Rl~~Rr~~~~~g~~y~~~~~~~~~~~~pp~~~~~~c~~~ 164 (229)
T PTZ00088 85 CFKGFILDGFPRNLKQCKELGKITNIDLFVNIYLPRNILIKKLLGRRICNTCNRNFNIAHIRSDPYDMPPILPPADCEGC 164 (229)
T ss_pred cCceEEEecCCCCHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHcCcCCCccCCcceecccccccccCCCCCCCCccccc
Confidence 358999999999999999998878899999999999999999999999999999998742 11
Q ss_pred -------CCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCc-EEEE---eCCCChhHHHHHHHHHH
Q 024067 204 -------FSAADAASAWKEKFRIYAEQGKSLEDYYSKQRK-LLNF---QVAAAPGETWQGLLSAL 257 (273)
Q Consensus 204 -------~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~-~~~i---d~~~s~~ev~~~I~~~l 257 (273)
.+.||+++.+++|++.|+++..++.+||++.++ ++.| |+++++++|++.|.+.|
T Consensus 165 ~~~~~l~~R~DD~~e~i~~Rl~~Y~~~t~pl~~~y~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 229 (229)
T PTZ00088 165 KGNPKLQKRSDDTEEIVAHRLNTYESTNSPIIQFFKNENCNLVDFEITRGLRDFDDFYRIVLQRL 229 (229)
T ss_pred CCcccccCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHcCCeEEEEecCCCCCCHHHHHHHHHhhC
Confidence 257899999999999999999999999999999 9888 79999999999998753
No 8
>PRK00279 adk adenylate kinase; Reviewed
Probab=100.00 E-value=1.6e-37 Score=267.41 Aligned_cols=194 Identities=28% Similarity=0.488 Sum_probs=178.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCCc
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE 143 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~~ 143 (273)
++|+|+|+|||||||+|+.||++||++||++++++++++..+++.++.+++++.+|..+|++++..++.+++....+ .
T Consensus 1 ~~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~i~~~l~~~~~--~ 78 (215)
T PRK00279 1 MRLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMDAGELVPDEIVIGLVKERLAQPDC--K 78 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHHHHhccchHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccCc--c
Confidence 46999999999999999999999999999999999999998899999999999999999999999999999987543 4
Q ss_pred ceEEEeCCCCCHHHHHHHHhh-----CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCC--------------
Q 024067 144 SGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARF-------------- 204 (273)
Q Consensus 144 ~g~IlDg~P~~~~qa~~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~-------------- 204 (273)
.||||||||++..|++.|+.. ..++.+|+|+|+++++++|+.+|..|+.||..||....|+
T Consensus 79 ~g~VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~l~ 158 (215)
T PRK00279 79 NGFLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVERLSGRRICPACGRTYHVKFNPPKVEGKCDVCGEELI 158 (215)
T ss_pred CCEEEecCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHhCCcccCccCCcccccCCCCCCcCcCcCCCCccc
Confidence 599999999999999999644 3688999999999999999999999999999999765543
Q ss_pred -CCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHh
Q 024067 205 -SAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHL 259 (273)
Q Consensus 205 -~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~ 259 (273)
+.||+++.+++|+..|+++..++.+||++.++++.||+++++++||++|...|..
T Consensus 159 ~r~dd~~~~i~~Rl~~y~~~~~~i~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~ 214 (215)
T PRK00279 159 QRADDNEETVRKRLEVYHKQTAPLIDYYKKKGKLKKIDGTGSIDEVFADILKALGK 214 (215)
T ss_pred CCCCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHhc
Confidence 3678899999999999999999999999988999999999999999999998864
No 9
>PRK13808 adenylate kinase; Provisional
Probab=100.00 E-value=5.2e-36 Score=270.40 Aligned_cols=190 Identities=27% Similarity=0.434 Sum_probs=170.9
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCCc
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE 143 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~~ 143 (273)
++|+|+|||||||||+|.+|++.||++||++|++|++++..+++.|..+.+++.+|.++|++++..++.++|....+ .
T Consensus 1 mrIiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~~s~~g~~~~~~~~~G~lVPdeiv~~li~e~l~~~~~--~ 78 (333)
T PRK13808 1 MRLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEVVVGIISDRIEQPDA--A 78 (333)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhhcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHhcccc--c
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999987644 5
Q ss_pred ceEEEeCCCCCHHHHHHHHhh-----CCCceEEEEccCHHHHHHHHhcCCcCC-CcccccccCCCCCCCCCcHHHHHHHH
Q 024067 144 SGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLVKRNLESEAFS-PHKEFLRLGGARFSAADAASAWKEKF 217 (273)
Q Consensus 144 ~g~IlDg~P~~~~qa~~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~R~~~~-~~~~~y~~~~~~~~~~d~~e~~~~rl 217 (273)
.||||||||++..|++.|+.. ..||+||+|+||++++++|+.+|..+. .++ ...+.||+++.+.+|+
T Consensus 79 ~G~ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R~~~~~~rg-------~~~R~DD~~E~i~kRL 151 (333)
T PRK13808 79 NGFILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETRVAEMRARG-------EEVRADDTPEVLAKRL 151 (333)
T ss_pred CCEEEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcCcccccccC-------CccCCCCCHHHHHHHH
Confidence 899999999999999988754 369999999999999999999986532 112 1236788999999999
Q ss_pred HHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhcCC
Q 024067 218 RIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQHM 262 (273)
Q Consensus 218 ~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~~~ 262 (273)
..|+++..|+++||.+.+.++.||++.+++||+++|...|.....
T Consensus 152 ~~Y~~~t~PLl~~Y~e~~~lv~IDa~~siEEV~eeI~~~L~~~~~ 196 (333)
T PRK13808 152 ASYRAQTEPLVHYYSEKRKLLTVDGMMTIDEVTREIGRVLAAVGA 196 (333)
T ss_pred HHHHHHhHHHHHHhhccCcEEEEECCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999988899999999999999999999986643
No 10
>PRK14530 adenylate kinase; Provisional
Probab=100.00 E-value=1.6e-35 Score=254.93 Aligned_cols=192 Identities=24% Similarity=0.424 Sum_probs=171.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHc-----cCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHh
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQEL-----SPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEE 137 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~-----~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~ 137 (273)
+++|+|+|+|||||||+|+.|+++||++||+++++++++. ...+..+. +++++..|..+|+++...++.+.+..
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~~~~~~~~~~~~~~-~~~~~~~g~~~~d~~~~~~l~~~l~~ 81 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDISDMDTEYDT-PGEYMDAGELVPDAVVNEIVEEALSD 81 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhccCCcccccchHHH-HHHHHHcCCCCCHHHHHHHHHHHHhc
Confidence 4589999999999999999999999999999999999887 23445554 67889999999999999999888764
Q ss_pred cccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCC-------------
Q 024067 138 GYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARF------------- 204 (273)
Q Consensus 138 ~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~------------- 204 (273)
..|||+||||++..|++.|+....++++|+|+++++++++|+.+|..|+.||+.||....++
T Consensus 82 -----~~~~IldG~pr~~~q~~~l~~~~~~d~vI~Ld~~~~~l~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~rl 156 (215)
T PRK14530 82 -----ADGFVLDGYPRNLEQAEYLESITDLDVVLYLDVSEEELVDRLTGRRVCPDCGANYHVEFNQPEEEGVCDECGGEL 156 (215)
T ss_pred -----CCCEEEcCCCCCHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHhCCCcCcccCCccccCCCCCcccccCcccCCcc
Confidence 36899999999999999998777899999999999999999999999999999998765442
Q ss_pred --CCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhc
Q 024067 205 --SAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQ 260 (273)
Q Consensus 205 --~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~ 260 (273)
+.+|+++.+++|+..|+++..|+++||.+.++++.||+++++++||+.|...|...
T Consensus 157 ~~R~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~~ 214 (215)
T PRK14530 157 IQRDDDTEETVRERLDVFEENTEPVIEHYRDQGVLVEVDGEQTPDEVWADIQDAIDDA 214 (215)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHhcc
Confidence 45778999999999999999999999999888999999999999999999998764
No 11
>PRK14528 adenylate kinase; Provisional
Probab=100.00 E-value=2.2e-35 Score=248.66 Aligned_cols=180 Identities=28% Similarity=0.485 Sum_probs=165.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCCc
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE 143 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~~ 143 (273)
++|+|+|+|||||||+|+.|+++||++++++++++++++..++++|..++.++..|.++|++++..++.+++.+..+ .
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~~~~~~~g~~~~~~~~~g~lvp~~~~~~~~~~~l~~~~~--~ 79 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPDSVVIGIIKDRIREADC--K 79 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHhhcCCHHHHHHHHHHhCCCccCHHHHHHHHHHHHhCcCc--c
Confidence 57999999999999999999999999999999999999998999999999999999999999999999999987543 5
Q ss_pred ceEEEeCCCCCHHHHHHHHhh-----CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHH
Q 024067 144 SGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFR 218 (273)
Q Consensus 144 ~g~IlDg~P~~~~qa~~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~ 218 (273)
.||||||||++..|++.|+.. ..+|++|+|+||++++++|+.+|.... | +.||+++.+++|+.
T Consensus 80 ~g~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~~~--g----------r~dd~~e~i~~Rl~ 147 (186)
T PRK14528 80 NGFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAEIE--G----------RADDNEATIKNRLD 147 (186)
T ss_pred CcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCcccc--C----------CCCCCHHHHHHHHH
Confidence 799999999999999988754 369999999999999999999997532 1 45889999999999
Q ss_pred HHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHH
Q 024067 219 IYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSAL 257 (273)
Q Consensus 219 ~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l 257 (273)
.|++...|+.+||+++++++.||+++++++|++.|.+.|
T Consensus 148 ~y~~~~~pv~~~y~~~~~~~~i~~~~~~~~v~~~~~~~~ 186 (186)
T PRK14528 148 NYNKKTLPLLDFYAAQKKLSQVNGVGSLEEVTSLIQKEL 186 (186)
T ss_pred HHHHHhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHhC
Confidence 999999999999999999999999999999999998653
No 12
>PRK14531 adenylate kinase; Provisional
Probab=100.00 E-value=3.9e-35 Score=246.51 Aligned_cols=175 Identities=26% Similarity=0.439 Sum_probs=161.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCCc
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE 143 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~~ 143 (273)
.+|+|+|+|||||||+|+.|+++||++||++++++|+++..++++++.+++++.+|..+|++++..++.+++... ..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~~~~~~~~~~~~~~~~~~G~~v~d~l~~~~~~~~l~~~---~~ 79 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSDALVLAIVESQLKAL---NS 79 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHHHhcCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhc---cC
Confidence 479999999999999999999999999999999999999999999999999999999999999999999888753 25
Q ss_pred ceEEEeCCCCCHHHHHHHHhh-----CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHH
Q 024067 144 SGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFR 218 (273)
Q Consensus 144 ~g~IlDg~P~~~~qa~~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~ 218 (273)
.||||||||++..|++.|+.. ..++.+|+|+||++++.+|+.+|. +.||+++.+++|+.
T Consensus 80 ~g~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R~----------------r~dD~~e~i~~Rl~ 143 (183)
T PRK14531 80 GGWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLARG----------------RADDNEAVIRNRLE 143 (183)
T ss_pred CcEEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcCC----------------CCCCCHHHHHHHHH
Confidence 789999999999999988754 267899999999999999999985 34788899999999
Q ss_pred HHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHH
Q 024067 219 IYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSAL 257 (273)
Q Consensus 219 ~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l 257 (273)
.|++...|+.+||+..++++.||+++++++|+++|...|
T Consensus 144 ~y~~~~~pv~~~y~~~~~~~~id~~~~~~~v~~~i~~~l 182 (183)
T PRK14531 144 VYREKTAPLIDHYRQRGLLQSVEAQGSIEAITERIEKVL 182 (183)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence 999999999999999889999999999999999999876
No 13
>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.8e-35 Score=252.69 Aligned_cols=198 Identities=37% Similarity=0.552 Sum_probs=183.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccC
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~ 141 (273)
++.+++++|+||+||+|+|.+|++.|++.||+++|++|+++..++++|.++++++++|+++||+++..++...+....
T Consensus 14 ~~~~~v~~G~pg~gkgt~a~~l~~~~~~~hl~tGdllr~~ia~~telg~~~~~~~~~g~lvpDeiv~~~l~~~l~~~~-- 91 (235)
T KOG3078|consen 14 KGVRAVLLGAPGSGKGTQAPRLTKNFGVIHISTGDLLRDEIASGTELGKEAKEAIDKGKLVPDEVVVRLLEKRLENPR-- 91 (235)
T ss_pred cceEEEEEeCCCCCCCccCHHHHHhcCCccchhHHHHHHHHhccCcHHHHHHHHHHhcCcCcHHHHHHHHHhhccccc--
Confidence 689999999999999999999999999999999999999999999999999999999999999999998888888763
Q ss_pred CcceEEEeCCCCCHHHHHHH-HhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCC---------------
Q 024067 142 GESGFILDGIPRTRIQAEIL-DQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFS--------------- 205 (273)
Q Consensus 142 ~~~g~IlDg~P~~~~qa~~l-~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~--------------- 205 (273)
..++|++|||||+..|++.| +....+|.||+|+|+++.+.+|+.+|+.|+.+|+.||..+.|+.
T Consensus 92 ~~~~~ildg~Prt~~qa~~l~~~~~~~d~Vi~l~vp~~~L~~ri~~r~ihp~sG~~Yh~~~~pPk~~~~dDitgepL~qr 171 (235)
T KOG3078|consen 92 CQKGFILDGFPRTVQQAEELLDRIAQIDLVINLKVPEEVLVDRITGRRIHPASGRVYHLEFNPPKVPGKDDITGEPLIQR 171 (235)
T ss_pred cccccccCCCCcchHHHHHHHHccCCcceEEEecCCHHHHHHHHhcccccCcccceecccccCCccccccccccChhhcC
Confidence 47999999999999988775 55678999999999999999999999999999999987665542
Q ss_pred CCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhcCC
Q 024067 206 AADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQHM 262 (273)
Q Consensus 206 ~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~~~ 262 (273)
.+|+++.++.|++.|+++.+|+++||++.+++..+++.. +++||..|...|.....
T Consensus 172 ~dD~~e~v~~rL~~y~~~~~pv~eyY~k~~~l~~~~~~~-~~~v~~~v~~~l~~~~~ 227 (235)
T KOG3078|consen 172 EDDKPEVVKKRLKAYKEQTKPVLEYYKKKGVLIEFSGEK-PEEVFPNVYAFLSKKVP 227 (235)
T ss_pred ccccHHHHHHHHHHHhhcchHHHHHHHhcCeeeeccCcc-hhHhHHHHHHHHHhhhh
Confidence 578899999999999999999999999999999999988 99999999999988765
No 14
>PRK14532 adenylate kinase; Provisional
Probab=100.00 E-value=3e-34 Score=241.71 Aligned_cols=181 Identities=27% Similarity=0.425 Sum_probs=163.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCCc
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE 143 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~~ 143 (273)
++|+|+|+|||||||+|++||+++|++||++|+++++++..+++.++.+++++..|+.+|++++..++.+.+.... ..
T Consensus 1 ~~i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~ 78 (188)
T PRK14532 1 MNLILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVSDEIVIALIEERLPEAE--AA 78 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHHcCCHHHHHHHHHHHCCCccCHHHHHHHHHHHHhCcC--cc
Confidence 3689999999999999999999999999999999999998889999999999999999999999999999987653 36
Q ss_pred ceEEEeCCCCCHHHHHHHHhh-----CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHH
Q 024067 144 SGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFR 218 (273)
Q Consensus 144 ~g~IlDg~P~~~~qa~~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~ 218 (273)
.|||+||||++..|++.++.. ..||++|+|++|++++.+|+.+|..+. .+++++++.+.+|+.
T Consensus 79 ~g~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~~~~------------~r~dd~~~~~~~Rl~ 146 (188)
T PRK14532 79 GGAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRFEEQ------------GRPDDNPEVFVTRLD 146 (188)
T ss_pred CcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCcCcC------------CCCCCCHHHHHHHHH
Confidence 899999999999999988643 468999999999999999999886421 145788889999999
Q ss_pred HHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHH
Q 024067 219 IYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALH 258 (273)
Q Consensus 219 ~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~ 258 (273)
.|.....++.+||++.+.++.||+++++++|+++|.+.|.
T Consensus 147 ~~~~~~~~i~~~y~~~~~~~~id~~~~~eev~~~I~~~l~ 186 (188)
T PRK14532 147 AYNAQTAPLLPYYAGQGKLTEVDGMGSIEAVAASIDAALE 186 (188)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHh
Confidence 9999999999999988889999999999999999999885
No 15
>PLN02200 adenylate kinase family protein
Probab=100.00 E-value=2.6e-33 Score=243.91 Aligned_cols=184 Identities=25% Similarity=0.458 Sum_probs=167.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccC
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~ 141 (273)
.+++|+|+|+|||||||+|+.|++++|++||++++++++++...++.+..+.+++..|..+|++++..++.+++...
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~~s~~~~~i~~~~~~G~~vp~e~~~~~l~~~l~~~--- 118 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTIKEGKIVPSEVTVKLIQKEMESS--- 118 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhccChhHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC---
Confidence 45789999999999999999999999999999999999999888899999999999999999999999999888753
Q ss_pred CcceEEEeCCCCCHHHHHHHHhh--CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHHH
Q 024067 142 GESGFILDGIPRTRIQAEILDQI--VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRI 219 (273)
Q Consensus 142 ~~~g~IlDg~P~~~~qa~~l~~~--~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~ 219 (273)
...+|||||||++..|+..|+.. ..||.+|+|+++++++.+|+.+|... +.+|+++.+++|+..
T Consensus 119 ~~~~~ILDG~Prt~~q~~~l~~~~~~~pd~vi~Ld~~~e~~~~Rl~~R~~~--------------r~dd~~e~~~~Rl~~ 184 (234)
T PLN02200 119 DNNKFLIDGFPRTEENRIAFERIIGAEPNVVLFFDCPEEEMVKRVLNRNQG--------------RVDDNIDTIKKRLKV 184 (234)
T ss_pred CCCeEEecCCcccHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHcCcCC--------------CCCCCHHHHHHHHHH
Confidence 24789999999999999988765 36999999999999999999988632 347788999999999
Q ss_pred HHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhcCC
Q 024067 220 YAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQHM 262 (273)
Q Consensus 220 y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~~~ 262 (273)
|.+...++.+||++.+.++.||+++++++|++.|.+.+.....
T Consensus 185 y~~~~~pv~~~y~~~~~~~~IDa~~~~eeV~~~v~~~l~~~~~ 227 (234)
T PLN02200 185 FNALNLPVIDYYSKKGKLYTINAVGTVDEIFEQVRPIFAACEA 227 (234)
T ss_pred HHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHHcCC
Confidence 9999999999999888899999999999999999999988764
No 16
>PRK14527 adenylate kinase; Provisional
Probab=100.00 E-value=3.7e-33 Score=235.98 Aligned_cols=182 Identities=26% Similarity=0.455 Sum_probs=165.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhccc
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYY 140 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~ 140 (273)
.+++.|+|+|+|||||||+|+.|++++|+.++++|++++++...+++++..+..++.+|..+|++++..++.+.+....
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~l~~~~l~~~~- 82 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDELILALIRDELAGME- 82 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHhcCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC-
Confidence 4678999999999999999999999999999999999999988889999999999999999999999999999988643
Q ss_pred CCcceEEEeCCCCCHHHHHHHHhh-----CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHH
Q 024067 141 RGESGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKE 215 (273)
Q Consensus 141 ~~~~g~IlDg~P~~~~qa~~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~ 215 (273)
..+|||||||++..|++.|+.. ..++.||+|+||++++++|+.+|.... .+.||+++.+++
T Consensus 83 --~~~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~~~------------~r~dd~~~~~~~ 148 (191)
T PRK14527 83 --PVRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVERARQE------------GRSDDNEETVRR 148 (191)
T ss_pred --CCcEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCcccC------------CCCCCCHHHHHH
Confidence 2579999999999999888653 357889999999999999999997532 256888999999
Q ss_pred HHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHH
Q 024067 216 KFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSAL 257 (273)
Q Consensus 216 rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l 257 (273)
|+..|++...|+.+||++.++++.||+++++++|+++|...|
T Consensus 149 R~~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l 190 (191)
T PRK14527 149 RQQVYREQTQPLVDYYEARGHLKRVDGLGTPDEVYARILKAL 190 (191)
T ss_pred HHHHHHHHhHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999876
No 17
>PRK02496 adk adenylate kinase; Provisional
Probab=100.00 E-value=5.1e-33 Score=233.53 Aligned_cols=178 Identities=30% Similarity=0.509 Sum_probs=162.3
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCC
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRG 142 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~ 142 (273)
+++|+|+|+|||||||+|+.|+++||++++++++++++++..++++|..++.++.+|..+|++++..++.+++.+..+
T Consensus 1 ~~~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~-- 78 (184)
T PRK02496 1 MTRLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYMDKGELVPDQLVLDLVQERLQQPDA-- 78 (184)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHhccChhHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCc--
Confidence 467999999999999999999999999999999999999988899999999999999999999999999999986543
Q ss_pred cceEEEeCCCCCHHHHHHHHhh-----CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHH
Q 024067 143 ESGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKF 217 (273)
Q Consensus 143 ~~g~IlDg~P~~~~qa~~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl 217 (273)
..||||||||++..|+..++.. ..|+++|+|+++++++.+|+..|.. .+|+++.+++|+
T Consensus 79 ~~g~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~----------------~dd~~~~~~~r~ 142 (184)
T PRK02496 79 ANGWILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLARGR----------------KDDTEEVIRRRL 142 (184)
T ss_pred cCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcCCC----------------CCCCHHHHHHHH
Confidence 4799999999999999888653 3689999999999999999998852 366788999999
Q ss_pred HHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHH
Q 024067 218 RIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALH 258 (273)
Q Consensus 218 ~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~ 258 (273)
..|+++..++.+||++.+.++.||+++++++|+++|...|.
T Consensus 143 ~~y~~~~~~v~~~~~~~~~~~~Ida~~~~~~V~~~i~~~l~ 183 (184)
T PRK02496 143 EVYREQTAPLIDYYRDRQKLLTIDGNQSVEAVTTELKAALA 183 (184)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHhC
Confidence 99999999999999988889999999999999999998773
No 18
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=100.00 E-value=6.2e-33 Score=232.41 Aligned_cols=178 Identities=25% Similarity=0.443 Sum_probs=160.5
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCCcc
Q 024067 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGES 144 (273)
Q Consensus 65 ~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~~~ 144 (273)
.|+|+|+|||||||+|+.|++++|++||++++++++++..+++.++.+++++.+|..+|++++..++.+++... ...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~---~~~ 77 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMIKNGKIVPSEVTVKLLKNAIQAD---GSK 77 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhcc---CCC
Confidence 37899999999999999999999999999999999999888899999999999999999999999999988764 257
Q ss_pred eEEEeCCCCCHHHHHHHHhh----CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHHHH
Q 024067 145 GFILDGIPRTRIQAEILDQI----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIY 220 (273)
Q Consensus 145 g~IlDg~P~~~~qa~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~y 220 (273)
+|||||||++..|+..|... ..||++|+|++|++++++|+..|.... .+.+++.+.+++|+..|
T Consensus 78 ~~vlDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~~~------------~r~dd~~e~~~~r~~~y 145 (183)
T TIGR01359 78 KFLIDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRGQSS------------GRVDDNIESIKKRFRTY 145 (183)
T ss_pred cEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCCccC------------CCCCCCHHHHHHHHHHH
Confidence 89999999999999887643 478999999999999999999987421 13467889999999999
Q ss_pred HHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHH
Q 024067 221 AEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSAL 257 (273)
Q Consensus 221 ~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l 257 (273)
.+...++.+||++.+.++.||+++++++|+++|.+.|
T Consensus 146 ~~~~~~i~~~~~~~~~~~~Id~~~~~~~v~~~i~~~l 182 (183)
T TIGR01359 146 NEQTLPVIEHYENKGKVKEINAEGSVEEVFEDVEKIF 182 (183)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHh
Confidence 9999999999998888999999999999999999876
No 19
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=100.00 E-value=6.4e-33 Score=234.00 Aligned_cols=183 Identities=34% Similarity=0.559 Sum_probs=166.0
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCCcc
Q 024067 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGES 144 (273)
Q Consensus 65 ~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~~~ 144 (273)
+|+|+|+|||||||+|+.|+++||+++|++++++++.+...+++++.+.+++.+|..++++++..++..++.... ...
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~--~~~ 78 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDSGKLVPDEIVIKLLKERLKKPD--CKK 78 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHhcCChHHHHHHHHHHcCCccCHHHHHHHHHHHHhccc--ccC
Confidence 489999999999999999999999999999999999998888999999999999999999999999999998642 358
Q ss_pred eEEEeCCCCCHHHHHHHHhhC----CCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCC-------CCCCCcHHHH
Q 024067 145 GFILDGIPRTRIQAEILDQIV----DVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGAR-------FSAADAASAW 213 (273)
Q Consensus 145 g~IlDg~P~~~~qa~~l~~~~----~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~-------~~~~d~~e~~ 213 (273)
+||+||||++..|++.|+... .|+++|+|+||++++.+|+.+|..++.||..||....+ .+.+|+++.+
T Consensus 79 ~~vldg~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~~l~~r~dd~~~~i 158 (194)
T cd01428 79 GFILDGFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIERILGRRICPVSGRVYHLGKDDVTGEPLSQRSDDNEETI 158 (194)
T ss_pred CEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcCCCcCCcCCcCCCcccCCccccCCCCCHHHH
Confidence 899999999999999997654 78999999999999999999999999999999862211 1467889999
Q ss_pred HHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHH
Q 024067 214 KEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGET 249 (273)
Q Consensus 214 ~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev 249 (273)
++|+..|++...++.+||.+.++++.||+++++++|
T Consensus 159 ~~R~~~y~~~~~~i~~~~~~~~~~~~id~~~~~~~v 194 (194)
T cd01428 159 KKRLEVYKEQTAPLIDYYKKKGKLVEIDGSGDIDEV 194 (194)
T ss_pred HHHHHHHHHhHHHHHHHHHhCCCEEEEECCCCcCcC
Confidence 999999999999999999999999999999998874
No 20
>PLN02842 nucleotide kinase
Probab=100.00 E-value=5.1e-33 Score=262.05 Aligned_cols=193 Identities=22% Similarity=0.370 Sum_probs=175.5
Q ss_pred EEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCCcceE
Q 024067 67 VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGESGF 146 (273)
Q Consensus 67 vi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~~~g~ 146 (273)
.|+|+|||||||+|++|+++|+++||+++++++++++.++++|+.+++++.+|+++|++++..++.+++.+..+ ...||
T Consensus 1 ~I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~~~T~iG~~Ire~l~~G~lvPdeiv~~ll~drl~~~~~-~~~G~ 79 (505)
T PLN02842 1 MISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIVIAMVTGRLSREDA-KEKGW 79 (505)
T ss_pred CeeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhccCCHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhCccc-cCCcE
Confidence 37999999999999999999999999999999999999999999999999999999999999999999986433 35789
Q ss_pred EEeCCCCCHHHHHHHHhhC-CCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCC-----------CCCCcHHHHH
Q 024067 147 ILDGIPRTRIQAEILDQIV-DVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARF-----------SAADAASAWK 214 (273)
Q Consensus 147 IlDg~P~~~~qa~~l~~~~-~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~-----------~~~d~~e~~~ 214 (273)
||||||++..|++.|+... .||+||+|+|+++++++|+.+|..|+.||..||....++ +.||+++.++
T Consensus 80 ILDGfPRt~~Qa~~Le~~~~~PDlVI~LDvpdevlleRl~gR~~dp~tG~iYh~~~~pP~~~~~~~rL~~R~DD~eE~Ik 159 (505)
T PLN02842 80 LLDGYPRSFAQAQSLEKLKIRPDIFILLDVPDEILIDRCVGRRLDPVTGKIYHIKNFPPESEEIKARLITRPDDTEEKVK 159 (505)
T ss_pred EEeCCCCcHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhccccccccCCccccccCCCCccccccccccCCCCCHHHHH
Confidence 9999999999999997654 699999999999999999999999999999999765543 4688999999
Q ss_pred HHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhcCC
Q 024067 215 EKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQHM 262 (273)
Q Consensus 215 ~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~~~ 262 (273)
+|+..|++...|+.++|.. .++.||+++++++|+++|.+.|.....
T Consensus 160 kRL~~Y~~~t~pIl~~Y~~--rl~~IDAsqs~EeVfeeI~~iL~~~L~ 205 (505)
T PLN02842 160 ARLQIYKKNAEAILSTYSD--IMVKIDGNRPKEVVFEEISSLLSQIQK 205 (505)
T ss_pred HHHHHHHHHhhhHHHhcCc--EEEEEECCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999964 588999999999999999999975543
No 21
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=100.00 E-value=2.9e-32 Score=221.99 Aligned_cols=146 Identities=38% Similarity=0.625 Sum_probs=130.8
Q ss_pred EEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCCcceEE
Q 024067 68 LIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGESGFI 147 (273)
Q Consensus 68 i~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~~~g~I 147 (273)
|+|||||||||+|++||++||++||++++++++++...+++|+.+++++.+|+.+|++++..++..++... ....|||
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~~s~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~~~--~~~~g~i 78 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKSDSELGKQIQEYLDNGELVPDELVIELLKERLEQP--PCNRGFI 78 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHTTSHHHHHHHHHHHTTSS--HHHHHHHHHHHHHSG--GTTTEEE
T ss_pred CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHHhhhhHHHHHHHHHHHhhccchHHHHHHHHHHHHhhh--cccceee
Confidence 68999999999999999999999999999999999999999999999999999999999999999999976 2479999
Q ss_pred EeCCCCCHHHHHHHHh-----hCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHHHHHH
Q 024067 148 LDGIPRTRIQAEILDQ-----IVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAE 222 (273)
Q Consensus 148 lDg~P~~~~qa~~l~~-----~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~y~~ 222 (273)
|||||++..|++.|+. ...|+.||+|+|+++++.+|+.+ |+++.+++|++.|++
T Consensus 79 ldGfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~---------------------d~~~~i~~Rl~~y~~ 137 (151)
T PF00406_consen 79 LDGFPRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIERLSQ---------------------DNEEVIKKRLEEYRE 137 (151)
T ss_dssp EESB-SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHHHHT---------------------GSHHHHHHHHHHHHH
T ss_pred eeeccccHHHHHHHHHHHhhcccchheeeccccchhhhhhhccc---------------------CCHHHHHHHHHHHHH
Confidence 9999999999999976 46789999999999999999976 346799999999999
Q ss_pred hhHHHHHHHHhcCc
Q 024067 223 QGKSLEDYYSKQRK 236 (273)
Q Consensus 223 ~~~~l~~~y~~~~~ 236 (273)
+..++.+||+++++
T Consensus 138 ~~~~i~~~y~~~g~ 151 (151)
T PF00406_consen 138 NTEPILDYYKEQGK 151 (151)
T ss_dssp HHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhhcC
Confidence 99999999998763
No 22
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=100.00 E-value=2e-31 Score=222.58 Aligned_cols=172 Identities=33% Similarity=0.613 Sum_probs=159.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCCc
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE 143 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~~ 143 (273)
++|+|+|+|||||||+|+.|+++++++|||+++++|......+++++.++.++.+|+++|++++..++..++...+|.
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~d~~-- 78 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIVNGLVKERLDEADCK-- 78 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhccCChHHHHHHHHHHcCCccchHHHHHHHHHHHHhhccc--
Confidence 478999999999999999999999999999999999999988999999999999999999999999999999987553
Q ss_pred ceEEEeCCCCCHHHHHHHHhh-----CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHH
Q 024067 144 SGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFR 218 (273)
Q Consensus 144 ~g~IlDg~P~~~~qa~~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~ 218 (273)
.+||+||||++..|++.|+.. ..+|.+++++++++.+++|+..|.. +.||+++.+++|+.
T Consensus 79 ~~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~~---------------r~dd~~~~~~~R~~ 143 (178)
T COG0563 79 AGFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLERLLGRRV---------------REDDNEETVKKRLK 143 (178)
T ss_pred CeEEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCHHHHHHHHhCccc---------------cccCCHHHHHHHHH
Confidence 399999999999999999865 4789999999999999999999864 35889999999999
Q ss_pred HHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHH
Q 024067 219 IYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSAL 257 (273)
Q Consensus 219 ~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l 257 (273)
.|++...|+.+||. +.||+.++++++++.|...+
T Consensus 144 ~y~~~~~pli~~y~-----~~id~~~~i~~v~~~i~~~l 177 (178)
T COG0563 144 VYHEQTAPLIEYYS-----VTIDGSGEIEEVLADILKAL 177 (178)
T ss_pred HHHhcccchhhhhe-----eeccCCCCHHHHHHHHHHhh
Confidence 99999999999998 78999999999999998765
No 23
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=99.97 E-value=1.8e-29 Score=211.70 Aligned_cols=183 Identities=25% Similarity=0.405 Sum_probs=161.4
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCC
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRG 142 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~ 142 (273)
...|+|+|+|||||||+|+.|++++|+.++++|+++++++...++.++.++.++.+|..+|++.+...+...+.... ..
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~ 81 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLDTVLDLLKDAMVAAL-GT 81 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccc-Cc
Confidence 45889999999999999999999999999999999999887778889999999999999999998888888776532 24
Q ss_pred cceEEEeCCCCCHHHHHHHHhh-CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHHHHH
Q 024067 143 ESGFILDGIPRTRIQAEILDQI-VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYA 221 (273)
Q Consensus 143 ~~g~IlDg~P~~~~qa~~l~~~-~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~y~ 221 (273)
+.+||+||||++..|+..+... ..|+++|+|++|++++.+|+..|... ..+.+++++.+.+|+..|.
T Consensus 82 ~~~~i~dg~~~~~~q~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~------------~~r~d~~~~~~~~r~~~~~ 149 (188)
T TIGR01360 82 SKGFLIDGYPREVKQGEEFERRIGPPTLVLYFDCSEDTMVKRLLKRAET------------SGRVDDNEKTIKKRLETYY 149 (188)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHccccc------------CCCCCCCHHHHHHHHHHHH
Confidence 6899999999999999988643 56999999999999999999988631 1256778899999999999
Q ss_pred HhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHH
Q 024067 222 EQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALH 258 (273)
Q Consensus 222 ~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~ 258 (273)
+...++.++|+..+.++.||+++++++++++|...|+
T Consensus 150 ~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~ 186 (188)
T TIGR01360 150 KATEPVIAYYETKGKLRKINAEGTVDDVFLQVCTAID 186 (188)
T ss_pred HhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHh
Confidence 9999999999887789999999999999999999886
No 24
>PRK01184 hypothetical protein; Provisional
Probab=99.80 E-value=8.9e-18 Score=140.82 Aligned_cols=172 Identities=13% Similarity=0.166 Sum_probs=119.4
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccC-CC-----hHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSP-RS-----ALYKQIANAVNEGKLVPEDVIFALLSKRLE 136 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~-~~-----~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~ 136 (273)
+++|+|+|+|||||||+++ +++++|+++++++|+++++... +. .+++.+..+... +....+..++...+.
T Consensus 1 ~~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~d~lr~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~i~ 76 (184)
T PRK01184 1 MKIIGVVGMPGSGKGEFSK-IAREMGIPVVVMGDVIREEVKKRGLEPTDENIGKVAIDLRKE---LGMDAVAKRTVPKIR 76 (184)
T ss_pred CcEEEEECCCCCCHHHHHH-HHHHcCCcEEEhhHHHHHHHHHcCCCCCcHHHHHHHHHHHHH---HChHHHHHHHHHHHH
Confidence 4588999999999999987 7899999999999999987632 21 255555554432 223344455555555
Q ss_pred hcccCCcceEEEeCCCCCHHHHHHHHhhCC-CceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHH
Q 024067 137 EGYYRGESGFILDGIPRTRIQAEILDQIVD-VDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKE 215 (273)
Q Consensus 137 ~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~-~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~ 215 (273)
. .+...+|+||+ ++..|.+.+..... +..+|+++||++++.+|+..|.... . ..+.+.+.+
T Consensus 77 ~---~~~~~vvidg~-r~~~e~~~~~~~~~~~~~~i~v~~~~~~~~~Rl~~R~~~~-------------d-~~~~~~~~~ 138 (184)
T PRK01184 77 E---KGDEVVVIDGV-RGDAEVEYFRKEFPEDFILIAIHAPPEVRFERLKKRGRSD-------------D-PKSWEELEE 138 (184)
T ss_pred h---cCCCcEEEeCC-CCHHHHHHHHHhCCcccEEEEEECCHHHHHHHHHHcCCCC-------------C-hhhHHHHHH
Confidence 4 23577999999 78888888866544 6689999999999999998875210 0 013556666
Q ss_pred HHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhc
Q 024067 216 KFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQ 260 (273)
Q Consensus 216 rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~ 260 (273)
|...... .++.+++...+ +.|+.++++++++++|...+...
T Consensus 139 r~~~q~~--~~~~~~~~~ad--~vI~N~~~~~~l~~~v~~~~~~~ 179 (184)
T PRK01184 139 RDERELS--WGIGEVIALAD--YMIVNDSTLEEFRARVRKLLERI 179 (184)
T ss_pred HHHHHhc--cCHHHHHHhcC--EEEeCCCCHHHHHHHHHHHHHHH
Confidence 6654321 12445555444 44566789999999999988754
No 25
>PRK13974 thymidylate kinase; Provisional
Probab=99.79 E-value=4.4e-18 Score=146.20 Aligned_cols=175 Identities=17% Similarity=0.151 Sum_probs=121.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeec--hhHHHHHHccCCChHHHHHHHHHH--CCCCCCHHHHHHHH--HHH--
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHIS--MGSLVRQELSPRSALYKQIANAVN--EGKLVPEDVIFALL--SKR-- 134 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is--~~dllr~~~~~~~~~g~~i~~~l~--~g~~~~~~~~~~ll--~~~-- 134 (273)
+..|+|.|++||||||+++.|++.+....+- ..+.+....+.++++|+.|++++. .|...++.....++ .++
T Consensus 3 g~~i~~eG~dGsGKsT~~~~l~~~l~~~g~~~~~~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~adr~~ 82 (212)
T PRK13974 3 GKFIVLEGIDGCGKTTQIDHLSKWLPSSGLMPKGAKLIITREPGGTLLGKSLRELLLDTSKDNSPSPLAELLLYAADRAQ 82 (212)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCccccCCeeeeeeCCCCCchHHHHHHHHcCCCcccCCCHHHHHHHHHHHHHH
Confidence 6799999999999999999999998532110 011222223457889999999986 33344444433322 111
Q ss_pred -----HHhcccCCcceEEE-----------eCCCCCHHH--HHHHHhh----CCCceEEEEccCHHHHHHHHhcCCcCCC
Q 024067 135 -----LEEGYYRGESGFIL-----------DGIPRTRIQ--AEILDQI----VDVDLVINFKSIEDQLVKRNLESEAFSP 192 (273)
Q Consensus 135 -----l~~~~~~~~~g~Il-----------Dg~P~~~~q--a~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~ 192 (273)
+... .. ...+|| +|+|++..+ ...++.. ..||++|+|+||++++.+|+.+|..
T Consensus 83 ~~~~~i~~~-l~-~g~~Vi~DRy~~S~~ay~g~~r~~~~~~~~~l~~~~~~~~~pd~~i~ld~~~~~~~~R~~~R~d--- 157 (212)
T PRK13974 83 HVSKIIRPA-LE-NGDWVISDRFSGSTLAYQGYGRGLDLELIKNLESIATQGLSPDLTFFLEISVEESIRRRKNRKP--- 157 (212)
T ss_pred HHHHHHHHH-HH-CCCEEEEcCchhhHHHHccccCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhccc---
Confidence 1111 11 122555 677876443 4444432 3699999999999999999987642
Q ss_pred cccccccCCCCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhc
Q 024067 193 HKEFLRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQ 260 (273)
Q Consensus 193 ~~~~y~~~~~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~ 260 (273)
| .++++...|.+...+..++|.+.+.++.||+++++++|+++|...|...
T Consensus 158 ---------------D---~~e~~~~~y~~~v~~~y~~y~~~~~~~~Ida~~~~eeV~~~I~~~l~~~ 207 (212)
T PRK13974 158 ---------------D---RIEAEGIEFLERVAEGFALIAEERNWKVISADQSIETISNEIKETLLNN 207 (212)
T ss_pred ---------------C---chhhhhHHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 2 2456677888888888889988889999999999999999999998753
No 26
>PRK03839 putative kinase; Provisional
Probab=99.77 E-value=1.3e-17 Score=139.43 Aligned_cols=153 Identities=18% Similarity=0.244 Sum_probs=102.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCCc
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE 143 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~~ 143 (273)
++|+|+|+|||||||+++.||++++++|+++|+++++.. +++.... .+ +..+..+...+... ...
T Consensus 1 m~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~~~-----~~~~~~~---~~-----~~~~~~l~~~~~~~--~~~ 65 (180)
T PRK03839 1 MIIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALKKG-----IGEEKDD---EM-----EIDFDKLAYFIEEE--FKE 65 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEehhhhhhhcC-----CcccCCh---hh-----hcCHHHHHHHHHHh--ccC
Confidence 369999999999999999999999999999999987531 1111000 01 12233344444332 124
Q ss_pred ceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHHHHHHh
Q 024067 144 SGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAEQ 223 (273)
Q Consensus 144 ~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~y~~~ 223 (273)
.+||+||+... ...++++|+|+++.+++.+|+..|.... .+..+.+.+++ .+
T Consensus 66 ~~vIidG~~~~---------l~~~~~vi~L~~~~~~~~~Rl~~R~~~~---------------~~~~~~~~~~~---~~- 117 (180)
T PRK03839 66 KNVVLDGHLSH---------LLPVDYVIVLRAHPKIIKERLKERGYSK---------------KKILENVEAEL---VD- 117 (180)
T ss_pred CCEEEEecccc---------ccCCCEEEEEECCHHHHHHHHHHcCCCH---------------HHHHHHHHHHH---HH-
Confidence 67999997532 2468999999999999999998875311 00011111211 11
Q ss_pred hHHHHHHHHhcCcEEEEeCC-CChhHHHHHHHHHHHhc
Q 024067 224 GKSLEDYYSKQRKLLNFQVA-AAPGETWQGLLSALHLQ 260 (273)
Q Consensus 224 ~~~l~~~y~~~~~~~~id~~-~s~~ev~~~I~~~l~~~ 260 (273)
.++.++|.....++.||++ .++++++++|.+.+...
T Consensus 118 -~~~~~~~~~r~~~~~Id~~~~s~eev~~~I~~~l~~~ 154 (180)
T PRK03839 118 -VCLCEALEEKEKVIEVDTTGKTPEEVVEEILELIKSG 154 (180)
T ss_pred -HHHHHHHHhcCCEEEEECCCCCHHHHHHHHHHHHhcC
Confidence 1234566666778999996 59999999999999865
No 27
>PRK08356 hypothetical protein; Provisional
Probab=99.76 E-value=1.7e-17 Score=140.75 Aligned_cols=173 Identities=14% Similarity=0.110 Sum_probs=110.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHcc----CCC---hHHHH----HHHHHHCCCCCCH----HHH
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELS----PRS---ALYKQ----IANAVNEGKLVPE----DVI 127 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~----~~~---~~g~~----i~~~l~~g~~~~~----~~~ 127 (273)
.+.|+|+|||||||||+|+.|+ ++|+++|++++.++.... ... ..+.. ..++++.|..+++ +++
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~-~~g~~~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~~~~ 83 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFE-EKGFCRVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGEDIL 83 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHH-HCCCcEEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcCcHHH
Confidence 4679999999999999999996 589999999986543222 111 22211 2455666666663 566
Q ss_pred HHHHHHHHHhcccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCC
Q 024067 128 FALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAA 207 (273)
Q Consensus 128 ~~ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~ 207 (273)
..++.+.+.. ...|++||+ ++..|++.|... ...+|+|+++.+++.+|+..|.... ++. .
T Consensus 84 ~~~~~~~~~~-----~~~ividG~-r~~~q~~~l~~~--~~~vi~l~~~~~~~~~Rl~~R~~~~-----------~~~-~ 143 (195)
T PRK08356 84 IRLAVDKKRN-----CKNIAIDGV-RSRGEVEAIKRM--GGKVIYVEAKPEIRFERLRRRGAEK-----------DKG-I 143 (195)
T ss_pred HHHHHHHhcc-----CCeEEEcCc-CCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHhcCCcc-----------ccc-c
Confidence 6666565532 235999999 999999988753 2479999999999999999887432 000 1
Q ss_pred CcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHh
Q 024067 208 DAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHL 259 (273)
Q Consensus 208 d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~ 259 (273)
.+.+.++++.. .+.......++....+ ++.+| +++.++++++|..++..
T Consensus 144 ~~~e~~~~~~~-~~~~l~~~~~~~~~aD-~vI~N-~~~~e~~~~~i~~~~~~ 192 (195)
T PRK08356 144 KSFEDFLKFDE-WEEKLYHTTKLKDKAD-FVIVN-EGTLEELRKKVEEILRE 192 (195)
T ss_pred ccHHHHHHHHH-HHHHhhhhhhHHHhCc-EEEEC-CCCHHHHHHHHHHHHHH
Confidence 12333333221 1111111122222233 33344 68999999999998864
No 28
>PRK13973 thymidylate kinase; Provisional
Probab=99.76 E-value=3e-17 Score=141.15 Aligned_cols=174 Identities=13% Similarity=0.132 Sum_probs=112.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh---CCCeechhHHHHHHccCCChHHHHHHHHHHCC--CCCC------------H
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL---EVPHISMGSLVRQELSPRSALYKQIANAVNEG--KLVP------------E 124 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~---g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g--~~~~------------~ 124 (273)
+++.|+|.|++||||||+++.|++++ |..++.+ ..+.+++.|+.+++++..+ ..+. .
T Consensus 2 ~g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~------~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~ll~~a~r~ 75 (213)
T PRK13973 2 RGRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVT------REPGGSPGAEAIRHVLLSGAAELYGPRMEALLFAAARD 75 (213)
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE------ECCCCCchHHHHHHHHcCCCccCCCHHHHHHHHHHHHH
Confidence 36899999999999999999999999 7777755 1122344555555554432 1111 1
Q ss_pred HHHHHHHHHHHHhcccCCcceEEEeCC----------CCC--HHHHHHHHhh----CCCceEEEEccCHHHHHHHHhcCC
Q 024067 125 DVIFALLSKRLEEGYYRGESGFILDGI----------PRT--RIQAEILDQI----VDVDLVINFKSIEDQLVKRNLESE 188 (273)
Q Consensus 125 ~~~~~ll~~~l~~~~~~~~~g~IlDg~----------P~~--~~qa~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (273)
+.+...+...+..+ .-+|.|.| ++. ..+...|+.. ..||++|+|+||++++.+|+..|.
T Consensus 76 ~~~~~~i~~~l~~g-----~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD~vi~Ldv~~e~~~~Rl~~R~ 150 (213)
T PRK13973 76 DHVEEVIRPALARG-----KIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLILDIPAEVGLERAAKRR 150 (213)
T ss_pred HHHHHHHHHHHHCC-----CEEEEcchhhhHHHHcccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcc
Confidence 23334455555543 34455644 432 2345555432 369999999999999999999886
Q ss_pred cCCCcccccccCCCCCCCC-CcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhcCC
Q 024067 189 AFSPHKEFLRLGGARFSAA-DAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQHM 262 (273)
Q Consensus 189 ~~~~~~~~y~~~~~~~~~~-d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~~~ 262 (273)
.... ..+.+ ++.+.++++.+.|.+.. ++|. ++++.||+++++++|+++|...+.....
T Consensus 151 ~~~~----------~~~~e~~~~~~~~~~~~~y~~l~----~~~~--~~~~~Ida~~~~e~V~~~I~~~i~~~~~ 209 (213)
T PRK13973 151 GSDT----------PDRFEKEDLAFHEKRREAFLQIA----AQEP--ERCVVIDATASPEAVAAEIWAAVDQRLL 209 (213)
T ss_pred CCCc----------cCchhhchHHHHHHHHHHHHHHH----HhCC--CcEEEEcCCCCHHHHHHHHHHHHHHHHh
Confidence 3210 00112 34456666677776533 2232 3588999999999999999999986543
No 29
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=99.73 E-value=9.6e-17 Score=131.91 Aligned_cols=160 Identities=19% Similarity=0.220 Sum_probs=107.1
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHhcccC
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNE-GKLVPEDVIFALLSKRLEEGYYR 141 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~-g~~~~~~~~~~ll~~~l~~~~~~ 141 (273)
.+.|+|+|+|||||||+++.||+.++++++|+|.++.+. .++.|.+++.. |+....+...+++.+.+...
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~------~g~sI~eIF~~~GE~~FR~~E~~vl~~l~~~~--- 72 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKR------TGMSIAEIFEEEGEEGFRRLETEVLKELLEED--- 72 (172)
T ss_pred CccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHH------HCcCHHHHHHHHhHHHHHHHHHHHHHHHhhcC---
Confidence 467999999999999999999999999999999999874 44567777764 65555566666666655542
Q ss_pred CcceEEEeC--CCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcH-----HHHH
Q 024067 142 GESGFILDG--IPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAA-----SAWK 214 (273)
Q Consensus 142 ~~~g~IlDg--~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~-----e~~~ 214 (273)
..+|-.| ...+.+....|.. -..+|||+++.+++++|+...... |...+.++ +.+.
T Consensus 73 --~~ViaTGGG~v~~~enr~~l~~---~g~vv~L~~~~e~l~~Rl~~~~~R------------Pll~~~~~~~~l~~L~~ 135 (172)
T COG0703 73 --NAVIATGGGAVLSEENRNLLKK---RGIVVYLDAPFETLYERLQRDRKR------------PLLQTEDPREELEELLE 135 (172)
T ss_pred --CeEEECCCccccCHHHHHHHHh---CCeEEEEeCCHHHHHHHhccccCC------------CcccCCChHHHHHHHHH
Confidence 2333333 2333444444443 338999999999999999844322 22222222 3333
Q ss_pred HHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhc
Q 024067 215 EKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQ 260 (273)
Q Consensus 215 ~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~ 260 (273)
+|.. .|++.. .+.++++...+++.++|...|...
T Consensus 136 ~R~~-----------~Y~e~a-~~~~~~~~~~~~v~~~i~~~l~~~ 169 (172)
T COG0703 136 ERQP-----------LYREVA-DFIIDTDDRSEEVVEEILEALEGS 169 (172)
T ss_pred HHHH-----------HHHHhC-cEEecCCCCcHHHHHHHHHHHHHh
Confidence 3433 344432 356777766699999999888654
No 30
>PRK13949 shikimate kinase; Provisional
Probab=99.72 E-value=6.2e-16 Score=128.32 Aligned_cols=163 Identities=14% Similarity=0.228 Sum_probs=104.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHhcccCC
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAV-NEGKLVPEDVIFALLSKRLEEGYYRG 142 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l-~~g~~~~~~~~~~ll~~~l~~~~~~~ 142 (273)
.+|+|+|+|||||||+++.||+.++++++++|.++++... ..+.+++ ..|.....+....++.+ +..
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~~~~~------~~~~~~~~~~g~~~fr~~e~~~l~~-l~~----- 69 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIENRFH------KTVGDIFAERGEAVFRELERNMLHE-VAE----- 69 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeecccHHHHHHHC------ccHHHHHHHhCHHHHHHHHHHHHHH-HHh-----
Confidence 4799999999999999999999999999999998876432 2333433 23444444555555554 332
Q ss_pred cceEEE-e--CCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHHH
Q 024067 143 ESGFIL-D--GIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRI 219 (273)
Q Consensus 143 ~~g~Il-D--g~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~ 219 (273)
..++|+ + |+|....+.+.|.. .+++|+|++|.+++++|+..+... .|.-.+...+.+.+.+
T Consensus 70 ~~~~vis~Ggg~~~~~~~~~~l~~---~~~vi~L~~~~~~~~~Ri~~~~~~-----------RP~~~~~~~~~~~~~i-- 133 (169)
T PRK13949 70 FEDVVISTGGGAPCFFDNMELMNA---SGTTVYLKVSPEVLFVRLRLAKQQ-----------RPLLKGKSDEELLDFI-- 133 (169)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHh---CCeEEEEECCHHHHHHHHhcCCCC-----------CCCCCCCChHHHHHHH--
Confidence 245666 4 45666766776653 468999999999999999753211 1111122222232222
Q ss_pred HHHhhHHHHHHHHhcCcEEEEeCCC-ChhHHHHHHHHHH
Q 024067 220 YAEQGKSLEDYYSKQRKLLNFQVAA-APGETWQGLLSAL 257 (273)
Q Consensus 220 y~~~~~~l~~~y~~~~~~~~id~~~-s~~ev~~~I~~~l 257 (273)
++.......+|++.+ +.||+++ +++++++.|.+.|
T Consensus 134 -~~l~~~R~~~Y~~ad--~~id~~~~~~~e~~~~I~~~~ 169 (169)
T PRK13949 134 -IEALEKRAPFYRQAK--IIFNADKLEDESQIEQLVQRL 169 (169)
T ss_pred -HHHHHHHHHHHHhCC--EEEECCCCCHHHHHHHHHHhC
Confidence 222333445677754 5567654 8999999988753
No 31
>PRK06217 hypothetical protein; Validated
Probab=99.72 E-value=4.4e-16 Score=130.70 Aligned_cols=172 Identities=16% Similarity=0.143 Sum_probs=109.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCC
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRG 142 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~ 142 (273)
+++|+|+|+|||||||+|+.|++.+|++++++|++++.. .+.+.+ ...+.+.....+.+.+..
T Consensus 1 ~~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~--~~~~~~----------~~~~~~~~~~~~~~~~~~----- 63 (183)
T PRK06217 1 MMRIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLP--TDPPFT----------TKRPPEERLRLLLEDLRP----- 63 (183)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeecc--CCCCcc----------ccCCHHHHHHHHHHHHhc-----
Confidence 468999999999999999999999999999999988742 111111 123445555555555533
Q ss_pred cceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHHHHHH
Q 024067 143 ESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAE 222 (273)
Q Consensus 143 ~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~y~~ 222 (273)
..+|||||++.... +.+ ...+|.+|+|++|.++++.|+..|.... .|+. . ......+.....+.++...|..
T Consensus 64 ~~~~vi~G~~~~~~--~~~--~~~~d~~i~Ld~~~~~~~~Rl~~R~~~~-~~~~--~-~~~~~~e~~~~~~~~~~~~~~~ 135 (183)
T PRK06217 64 REGWVLSGSALGWG--DPL--EPLFDLVVFLTIPPELRLERLRLREFQR-YGNR--I-LPGGDMHKASLEFLEWAASYDT 135 (183)
T ss_pred CCCEEEEccHHHHH--HHH--HhhCCEEEEEECCHHHHHHHHHcCcccc-cCcc--c-CCCCCHHHHHHHHHHHHHhccC
Confidence 36799999986422 222 1357899999999999999999987532 1110 0 0000001111223444334432
Q ss_pred ------hhHHHHHHHHhc-CcEEEEeCCCChhHHHHHHHHHHHh
Q 024067 223 ------QGKSLEDYYSKQ-RKLLNFQVAAAPGETWQGLLSALHL 259 (273)
Q Consensus 223 ------~~~~l~~~y~~~-~~~~~id~~~s~~ev~~~I~~~l~~ 259 (273)
.......++... ..++.+++..+++++.+.|...|.+
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~i~~~~~~ 179 (183)
T PRK06217 136 AGPEGRSLAAHEQWLADQSCPVLRLDGDLTVEDLLDEVLDHLAS 179 (183)
T ss_pred CCCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHHhc
Confidence 111122233322 4678889999999999999999864
No 32
>PRK08233 hypothetical protein; Provisional
Probab=99.68 E-value=1e-15 Score=127.55 Aligned_cols=171 Identities=13% Similarity=0.150 Sum_probs=101.7
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCC
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRG 142 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~ 142 (273)
++.|+|.|+|||||||+|+.|++.++...+...|..+.... ...+...+..|..+ +......+.+.+.......
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~ 76 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYDFDNC-----PEDICKWIDKGANY-SEWVLTPLIKDIQELIAKS 76 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCEEcccC-----chhhhhhhhccCCh-hhhhhHHHHHHHHHHHcCC
Confidence 57889999999999999999999996433322233322111 12333444445443 2223333333343221111
Q ss_pred cceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHHHHHH
Q 024067 143 ESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAE 222 (273)
Q Consensus 143 ~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~y~~ 222 (273)
...+|+..+|......+. . ..+|++|+|++|.+++++|+..|.... ++.+.+.+++..|..
T Consensus 77 ~~~~vivd~~~~~~~~~~-~--~~~d~~i~l~~~~~~~~~R~~~R~~~~----------------~~~~~~~~~~~~~~~ 137 (182)
T PRK08233 77 NVDYIIVDYPFAYLNSEM-R--QFIDVTIFIDTPLDIAMARRILRDFKE----------------DTGNEIHNDLKHYLN 137 (182)
T ss_pred CceEEEEeeehhhccHHH-H--HHcCEEEEEcCCHHHHHHHHHHHHhhh----------------ccccchhhHHHHHHH
Confidence 235555555654333221 1 247899999999999999988775311 112245566666665
Q ss_pred hhHHHHHHHH---h--cCcEEEEeCCCChhHHHHHHHHHHHhc
Q 024067 223 QGKSLEDYYS---K--QRKLLNFQVAAAPGETWQGLLSALHLQ 260 (273)
Q Consensus 223 ~~~~l~~~y~---~--~~~~~~id~~~s~~ev~~~I~~~l~~~ 260 (273)
...+. |++ . ....+.||++.++++++++|...|..+
T Consensus 138 ~~~~~--y~~~~~~~~~~~~~vId~~~~~e~i~~~i~~~l~~~ 178 (182)
T PRK08233 138 YARPL--YLEALHTVKPNADIVLDGALSVEEIINQIEEELYRR 178 (182)
T ss_pred HHHHH--HHHHhhcCccCCeEEEcCCCCHHHHHHHHHHHHHhC
Confidence 55443 222 1 123677999999999999999998865
No 33
>PRK13975 thymidylate kinase; Provisional
Probab=99.67 E-value=1.3e-14 Score=122.60 Aligned_cols=173 Identities=14% Similarity=0.141 Sum_probs=107.2
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHH-HH------HH
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALL-SK------RL 135 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll-~~------~l 135 (273)
++.|+|.|++||||||+++.|+++++..+.. .+.++..|+.+++++..+. .....+..+. .. .+
T Consensus 2 ~~~I~ieG~~GsGKtT~~~~L~~~l~~~~~~--------~~~~~~~g~~ir~~~~~~~-~~~~~~~~~f~~~r~~~~~~i 72 (196)
T PRK13975 2 NKFIVFEGIDGSGKTTQAKLLAEKLNAFWTC--------EPTDGKIGKLIREILSGSK-CDKETLALLFAADRVEHVKEI 72 (196)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeeE--------CCCCChHHHHHHHHHccCC-CCHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999853211 1233556778888776553 2222211111 11 12
Q ss_pred HhcccCCcceEEEeCCCCCH--HH---------HHHHHh-hCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCC
Q 024067 136 EEGYYRGESGFILDGIPRTR--IQ---------AEILDQ-IVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGAR 203 (273)
Q Consensus 136 ~~~~~~~~~g~IlDg~P~~~--~q---------a~~l~~-~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~ 203 (273)
... . ....+|+|.|..+. .| ...+.. ...||++|+|+++++++.+|+..|...
T Consensus 73 ~~~-~-~~~~vi~DRy~~S~~a~~~~~g~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~Rl~~r~~~------------- 137 (196)
T PRK13975 73 EED-L-KKRDVVCDRYVYSSIAYQSVQGIDEDFIYSINRYAKKPDLVFLLDVDIEEALKRMETRDKE------------- 137 (196)
T ss_pred HHH-H-cCCEEEEECchhHHHHHhcccCCCHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHhccCcc-------------
Confidence 211 1 13568999775431 11 111221 246999999999999999999887521
Q ss_pred CCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCC-CChhHHHHHHHHHHHhcCCC
Q 024067 204 FSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVA-AAPGETWQGLLSALHLQHMN 263 (273)
Q Consensus 204 ~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~-~s~~ev~~~I~~~l~~~~~~ 263 (273)
..++.+.+++....|.+... .+.|.....++.||++ .++++++++|...|..+..+
T Consensus 138 --~~~~~~~~~~~~~~y~~~~~--~~~~~~~~~~~~Id~~~~~~eev~~~I~~~i~~~~~~ 194 (196)
T PRK13975 138 --IFEKKEFLKKVQEKYLELAN--NEKFMPKYGFIVIDTTNKSIEEVFNEILNKIKDKIPD 194 (196)
T ss_pred --ccchHHHHHHHHHHHHHHHh--hcccCCcCCEEEEECCCCCHHHHHHHHHHHHHHhCCc
Confidence 01223344444555655433 2222223357899986 79999999999999876543
No 34
>PLN02924 thymidylate kinase
Probab=99.66 E-value=9.6e-15 Score=126.10 Aligned_cols=175 Identities=14% Similarity=0.162 Sum_probs=112.4
Q ss_pred cCCCCCCCCCCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHH----
Q 024067 53 LDSAGSPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIF---- 128 (273)
Q Consensus 53 ~~~~~~~~~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~---- 128 (273)
+++++..+.+++.|+|.|++||||||+++.|++.++...+.+ .+++ +...++..|+.+++++..+..+......
T Consensus 6 ~~~~~~~~~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v-~~~~-ep~~~~~~g~~ir~~l~~~~~~~~~~~~llf~ 83 (220)
T PLN02924 6 METESSVESRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAA-ELWR-FPDRTTSVGQMISAYLSNKSQLDDRAIHLLFS 83 (220)
T ss_pred cCCCCCcCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCc-eeee-CCCCCChHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 355555566889999999999999999999999997665554 2222 3334688999999998876544433221
Q ss_pred -------HHHHHHHHhcccCCcceEEEeCCCCC--HHHH---------HHHHh-hCCCceEEEEccCHHHHHHHHhcCCc
Q 024067 129 -------ALLSKRLEEGYYRGESGFILDGIPRT--RIQA---------EILDQ-IVDVDLVINFKSIEDQLVKRNLESEA 189 (273)
Q Consensus 129 -------~ll~~~l~~~~~~~~~g~IlDg~P~~--~~qa---------~~l~~-~~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (273)
..+...+. .+..+|.|.|..+ ..|. ..+.. ...||++|+|++|++++.+|...+.
T Consensus 84 adR~~~~~~I~pal~-----~g~vVI~DRy~~S~~ayq~~~g~~~~~~~~~~~~~~~PDlvi~Ld~~~~~a~~R~~~~~- 157 (220)
T PLN02924 84 ANRWEKRSLMERKLK-----SGTTLVVDRYSYSGVAFSAAKGLDLEWCKAPEVGLPAPDLVLYLDISPEEAAERGGYGG- 157 (220)
T ss_pred HHHHHHHHHHHHHHH-----CCCEEEEccchhHHHHHHHhcCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccCc-
Confidence 11222222 2467899987653 1121 11211 2369999999999999999864211
Q ss_pred CCCcccccccCCCCCCCCCcHHHHHHHHH-HHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhc
Q 024067 190 FSPHKEFLRLGGARFSAADAASAWKEKFR-IYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQ 260 (273)
Q Consensus 190 ~~~~~~~y~~~~~~~~~~d~~e~~~~rl~-~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~ 260 (273)
+. -++. .+.++++ .|.+. .+ ..++.||++.++++|.++|.+.+...
T Consensus 158 ~~---------------~E~~-~~~~rv~~~Y~~l----a~-----~~~~vIDa~~sieeV~~~I~~~I~~~ 204 (220)
T PLN02924 158 ER---------------YEKL-EFQKKVAKRFQTL----RD-----SSWKIIDASQSIEEVEKKIREVVLDT 204 (220)
T ss_pred cc---------------cccH-HHHHHHHHHHHHH----hh-----cCEEEECCCCCHHHHHHHHHHHHHHH
Confidence 00 0112 2233332 23221 11 35788999999999999999988764
No 35
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.64 E-value=8.8e-16 Score=138.22 Aligned_cols=165 Identities=14% Similarity=0.105 Sum_probs=105.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh-CCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccC
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLL-EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~-g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~ 141 (273)
+..|+++|+|||||||+|+.|++++ ++.+|+.|++ ++.+......+.. .+...+...-.+.....+...+..
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~-r~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~---- 74 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDL-RQSLFGHGEWGEY--KFTKEKEDLVTKAQEAAALAALKS---- 74 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHH-HHHhcCCCccccc--ccChHHHHHHHHHHHHHHHHHHHc----
Confidence 4678899999999999999999999 8999999765 4443322111100 000000000011222333333332
Q ss_pred CcceEEEeCCCCCHHHHHHHHhh---CCCc-eEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHH
Q 024067 142 GESGFILDGIPRTRIQAEILDQI---VDVD-LVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKF 217 (273)
Q Consensus 142 ~~~g~IlDg~P~~~~qa~~l~~~---~~~d-~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl 217 (273)
+.++|+|+++.+..+...+... .... .+|+|+++.+++.+|+.+|..+. -+.+..+...+|+
T Consensus 75 -g~~vIid~~~~~~~~~~~~~~la~~~~~~~~~v~l~~~~e~~~~R~~~R~~~~-------------~~~~~i~~~~~~~ 140 (300)
T PHA02530 75 -GKSVIISDTNLNPERRRKWKELAKELGAEFEEKVFDVPVEELVKRNRKRGERA-------------VPEDVLRSMFKQM 140 (300)
T ss_pred -CCeEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHccCcCC-------------CCHHHHHHHHHHH
Confidence 4779999999998888776543 2233 37999999999999999995332 1122233334778
Q ss_pred HHHHHhhHHHHHHHHhcCcEEEEeCCCChhH
Q 024067 218 RIYAEQGKSLEDYYSKQRKLLNFQVAAAPGE 248 (273)
Q Consensus 218 ~~y~~~~~~l~~~y~~~~~~~~id~~~s~~e 248 (273)
+.|.+...|+...|....+++.+|.++++.+
T Consensus 141 ~~~~~~~~p~~~~~~~~~~~~~~D~dgtl~~ 171 (300)
T PHA02530 141 KEYRGLVWPVYTADPGLPKAVIFDIDGTLAK 171 (300)
T ss_pred HHhcCCCCceeccCCCCCCEEEEECCCcCcC
Confidence 8888877888666655556788888777654
No 36
>PRK13948 shikimate kinase; Provisional
Probab=99.62 E-value=2.6e-14 Score=119.90 Aligned_cols=162 Identities=12% Similarity=0.075 Sum_probs=102.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHhccc
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN-EGKLVPEDVIFALLSKRLEEGYY 140 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~-~g~~~~~~~~~~ll~~~l~~~~~ 140 (273)
++..|+|+|+|||||||+++.||+++|.++|++|.++++. .|..+.+++. .|+....+....++.+.+..
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie~~------~g~si~~if~~~Ge~~fR~~E~~~l~~l~~~--- 79 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIERV------TGKSIPEIFRHLGEAYFRRCEAEVVRRLTRL--- 79 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHHHH------HhCCHHHHHHHhCHHHHHHHHHHHHHHHHhc---
Confidence 5678999999999999999999999999999999888764 3344555553 35444444455555444332
Q ss_pred CCcceEEEe---CCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHH
Q 024067 141 RGESGFILD---GIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKF 217 (273)
Q Consensus 141 ~~~~g~IlD---g~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl 217 (273)
.+.||. |.+........|.+ -..+|+|+++.+++.+|+..+. .|.-.+.+. .+++
T Consensus 80 ---~~~VIa~GgG~v~~~~n~~~l~~---~g~vV~L~~~~e~l~~Rl~~~~-------------RPll~~~~~---~~~l 137 (182)
T PRK13948 80 ---DYAVISLGGGTFMHEENRRKLLS---RGPVVVLWASPETIYERTRPGD-------------RPLLQVEDP---LGRI 137 (182)
T ss_pred ---CCeEEECCCcEEcCHHHHHHHHc---CCeEEEEECCHHHHHHHhcCCC-------------CCCCCCCCh---HHHH
Confidence 334443 34444444444443 3569999999999999994321 111111111 1222
Q ss_pred HHHHHhhHHHHHHHHhcCcEEEEeCC-CChhHHHHHHHHHHHh
Q 024067 218 RIYAEQGKSLEDYYSKQRKLLNFQVA-AAPGETWQGLLSALHL 259 (273)
Q Consensus 218 ~~y~~~~~~l~~~y~~~~~~~~id~~-~s~~ev~~~I~~~l~~ 259 (273)
.. .......+|+..+ +.||++ .+++++.++|...+..
T Consensus 138 ~~---l~~~R~~~Y~~a~--~~i~t~~~~~~ei~~~i~~~l~~ 175 (182)
T PRK13948 138 RT---LLNEREPVYRQAT--IHVSTDGRRSEEVVEEIVEKLWA 175 (182)
T ss_pred HH---HHHHHHHHHHhCC--EEEECCCCCHHHHHHHHHHHHHH
Confidence 22 2223345676543 445654 6899999999999876
No 37
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=99.62 E-value=3.9e-14 Score=120.90 Aligned_cols=178 Identities=16% Similarity=0.186 Sum_probs=112.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCC-CCCCHHHHH--------HHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEG-KLVPEDVIF--------ALLS 132 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g-~~~~~~~~~--------~ll~ 132 (273)
+++.|+|.|..||||||+++.|++.+.-..+++ +....+.++++|+.|++++.++ ..+...... ..+.
T Consensus 2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v---~~trEP~~~~ige~iR~~ll~~~~~~~~~~e~lLfaadR~~h~~ 78 (208)
T COG0125 2 KGMFIVIEGIDGAGKTTQAELLKERLEERGIKV---VLTREPGGTPIGEKIRELLLNGEEKLSPKAEALLFAADRAQHLE 78 (208)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeE---EEEeCCCCChHHHHHHHHHcCCccCCCHHHHHHHHHHHHHHHHH
Confidence 588999999999999999999999995443321 2224466799999999999886 334332221 1122
Q ss_pred HHHHhcccCCcceEEEeCCCCC--HHH----------HHHHHhh-C---CCceEEEEccCHHHHHHHHhcCCcCCCcccc
Q 024067 133 KRLEEGYYRGESGFILDGIPRT--RIQ----------AEILDQI-V---DVDLVINFKSIEDQLVKRNLESEAFSPHKEF 196 (273)
Q Consensus 133 ~~l~~~~~~~~~g~IlDg~P~~--~~q----------a~~l~~~-~---~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~ 196 (273)
+.+... ...+.-+|.|.|-.+ ..| ...+.++ . .||++|+|++++++.++|+.+|+... .
T Consensus 79 ~~i~pa-l~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~~e~al~R~~~r~~~~--~-- 153 (208)
T COG0125 79 EVIKPA-LKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVPPEVALERIRKRGELR--D-- 153 (208)
T ss_pred HHHHHh-hcCCCEEEECCcccHHHHhhhhccCCCHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHhcCCcc--c--
Confidence 222221 122456788876543 223 2222222 2 69999999999999999999987531 0
Q ss_pred cccCCCCCCCCCcHHHHHHH-HHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhcC
Q 024067 197 LRLGGARFSAADAASAWKEK-FRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQH 261 (273)
Q Consensus 197 y~~~~~~~~~~d~~e~~~~r-l~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~~ 261 (273)
+.+.....+.++ .+.|.+ +.+.+. +.+++||++.++++|.++|...|....
T Consensus 154 --------r~E~~~~~f~~kvr~~Y~~----la~~~~--~r~~vIda~~~~e~v~~~i~~~l~~~l 205 (208)
T COG0125 154 --------RFEKEDDEFLEKVREGYLE----LAAKFP--ERIIVIDASRPLEEVHEEILKILKERL 205 (208)
T ss_pred --------hhhhHHHHHHHHHHHHHHH----HHhhCC--CeEEEEECCCCHHHHHHHHHHHHHHhh
Confidence 111111112222 233332 222221 258999999999999999999987654
No 38
>PRK13947 shikimate kinase; Provisional
Probab=99.61 E-value=2e-14 Score=118.89 Aligned_cols=163 Identities=16% Similarity=0.190 Sum_probs=94.9
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHhcccCC
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN-EGKLVPEDVIFALLSKRLEEGYYRG 142 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~-~g~~~~~~~~~~ll~~~l~~~~~~~ 142 (273)
..|+|+|+|||||||+|+.||+++|+++++.|.++++.. + ..+.+++. .|+....+....++.. +..
T Consensus 2 ~~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~~~~-g-----~~~~~~~~~~ge~~~~~~e~~~~~~-l~~----- 69 (171)
T PRK13947 2 KNIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEKMT-G-----MTVAEIFEKDGEVRFRSEEKLLVKK-LAR----- 69 (171)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhhhhc-C-----CcHHHHHHHhChHHHHHHHHHHHHH-Hhh-----
Confidence 469999999999999999999999999999998876542 1 22223332 2322222222333332 221
Q ss_pred cceEEEe-C--CCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHHH
Q 024067 143 ESGFILD-G--IPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRI 219 (273)
Q Consensus 143 ~~g~IlD-g--~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~ 219 (273)
..++|+. | ++....+...|.+ .+++|+|+++++.+.+|+..|...+.. ...+..+.+. +.
T Consensus 70 ~~~~vi~~g~g~vl~~~~~~~l~~---~~~vv~L~~~~~~l~~Rl~~r~~rp~~-----------~~~~~~~~i~---~~ 132 (171)
T PRK13947 70 LKNLVIATGGGVVLNPENVVQLRK---NGVVICLKARPEVILRRVGKKKSRPLL-----------MVGDPEERIK---EL 132 (171)
T ss_pred cCCeEEECCCCCcCCHHHHHHHHh---CCEEEEEECCHHHHHHHhcCCCCCCCC-----------CCCChHHHHH---HH
Confidence 1234332 2 3333344444443 357999999999999999876432200 0111111222 12
Q ss_pred HHHhhHHHHHHHHhcCcEEEEe-CCCChhHHHHHHHH-HHHhcC
Q 024067 220 YAEQGKSLEDYYSKQRKLLNFQ-VAAAPGETWQGLLS-ALHLQH 261 (273)
Q Consensus 220 y~~~~~~l~~~y~~~~~~~~id-~~~s~~ev~~~I~~-~l~~~~ 261 (273)
|. ....+|...+ +.|| ++.+++++.+.|.. .+..++
T Consensus 133 ~~----~r~~~y~~ad--~~Idt~~~~~~~i~~~I~~~~~~~~~ 170 (171)
T PRK13947 133 LK----EREPFYDFAD--YTIDTGDMTIDEVAEEIIKAYLKLKN 170 (171)
T ss_pred HH----HHHHHHHhcC--EEEECCCCCHHHHHHHHHHHHHhhhc
Confidence 22 1234555433 4455 45799999999999 665543
No 39
>PRK08118 topology modulation protein; Reviewed
Probab=99.61 E-value=9.8e-15 Score=120.91 Aligned_cols=100 Identities=21% Similarity=0.251 Sum_probs=75.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCC
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRG 142 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~ 142 (273)
+++|+|+|+|||||||+|+.|++.++++++++|++++.. ....++++....++.+.+.
T Consensus 1 m~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~----------------~w~~~~~~~~~~~~~~~~~------ 58 (167)
T PRK08118 1 MKKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKP----------------NWEGVPKEEQITVQNELVK------ 58 (167)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhccc----------------CCcCCCHHHHHHHHHHHhc------
Confidence 358999999999999999999999999999999988631 1123455555555555443
Q ss_pred cceEEEeCCCC-CHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCc
Q 024067 143 ESGFILDGIPR-TRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEA 189 (273)
Q Consensus 143 ~~g~IlDg~P~-~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (273)
..+||+||.+. +.. ..+ ..+|.+|+|++|.++++.|+..|..
T Consensus 59 ~~~wVidG~~~~~~~--~~l---~~~d~vi~Ld~p~~~~~~R~~~R~~ 101 (167)
T PRK08118 59 EDEWIIDGNYGGTMD--IRL---NAADTIIFLDIPRTICLYRAFKRRV 101 (167)
T ss_pred CCCEEEeCCcchHHH--HHH---HhCCEEEEEeCCHHHHHHHHHHHHH
Confidence 25799999543 432 222 2589999999999999999988854
No 40
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=99.60 E-value=2.3e-14 Score=118.58 Aligned_cols=162 Identities=17% Similarity=0.170 Sum_probs=95.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHhcccCC
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN-EGKLVPEDVIFALLSKRLEEGYYRG 142 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~-~g~~~~~~~~~~ll~~~l~~~~~~~ 142 (273)
..|+|+|+|||||||+++.||+++|+++++.|.++..... ..+.+++. .|.....+...+++ ..+.
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~~~g------~~~~~~~~~~g~~~~~~~e~~~~-~~~~------ 69 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQSTSN------MTVAEIVEREGWAGFRARESAAL-EAVT------ 69 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhC------CCHHHHHHHHCHHHHHHHHHHHH-HHhc------
Confidence 4688999999999999999999999999999988865431 22223332 22111112222333 2222
Q ss_pred cceEEEe-C--CCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCC-CCCcHHHHHHHHH
Q 024067 143 ESGFILD-G--IPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFS-AADAASAWKEKFR 218 (273)
Q Consensus 143 ~~g~IlD-g--~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~-~~d~~e~~~~rl~ 218 (273)
...+|+. | ++....+...|. ..+++|+|+++++++.+|+..|.... ++ +...... .++..+.+++|
T Consensus 70 ~~~~vi~~ggg~vl~~~~~~~l~---~~~~~v~l~~~~~~~~~Rl~~r~~~~--~r---p~~~~~~~~~~~~~~~~~r-- 139 (171)
T PRK03731 70 APSTVIATGGGIILTEENRHFMR---NNGIVIYLCAPVSVLANRLEANPEED--QR---PTLTGKPISEEVAEVLAER-- 139 (171)
T ss_pred CCCeEEECCCCccCCHHHHHHHH---hCCEEEEEECCHHHHHHHHccccccc--cC---CcCCCCChHHHHHHHHHHH--
Confidence 1234443 3 333444444443 35689999999999999998764211 00 0000000 01112222223
Q ss_pred HHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHH
Q 024067 219 IYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALH 258 (273)
Q Consensus 219 ~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~ 258 (273)
..+|.+.. .+.||+++++++++++|.+.|.
T Consensus 140 ---------~~~y~~~a-~~~Id~~~~~e~v~~~i~~~l~ 169 (171)
T PRK03731 140 ---------EALYREVA-HHIIDATQPPSQVVSEILSALA 169 (171)
T ss_pred ---------HHHHHHhC-CEEEcCCCCHHHHHHHHHHHHh
Confidence 23444322 3788999999999999998875
No 41
>PRK00625 shikimate kinase; Provisional
Probab=99.60 E-value=1.9e-14 Score=119.82 Aligned_cols=115 Identities=17% Similarity=0.164 Sum_probs=72.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHhcccCC
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN-EGKLVPEDVIFALLSKRLEEGYYRG 142 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~-~g~~~~~~~~~~ll~~~l~~~~~~~ 142 (273)
+.|+|+|+|||||||+++.||+++|+++|++|+++++..... ....+.+++. .|.....+.....+.. +. .
T Consensus 1 ~~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~g~~--~~~~i~eif~~~Ge~~fr~~E~~~l~~-l~-----~ 72 (173)
T PRK00625 1 MQIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNYHGA--LYSSPKEIYQAYGEEGFCREEFLALTS-LP-----V 72 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHhCCC--CCCCHHHHHHHHCHHHHHHHHHHHHHH-hc-----c
Confidence 469999999999999999999999999999999998754321 1113444443 2332222223333322 21 1
Q ss_pred cceEEEeC--CCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCc
Q 024067 143 ESGFILDG--IPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEA 189 (273)
Q Consensus 143 ~~g~IlDg--~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (273)
...+|.+| .+......+.| ..-..||+|+++.+++.+|+..|..
T Consensus 73 ~~~VIs~GGg~~~~~e~~~~l---~~~~~Vv~L~~~~e~l~~Rl~~R~~ 118 (173)
T PRK00625 73 IPSIVALGGGTLMIEPSYAHI---RNRGLLVLLSLPIATIYQRLQKRGL 118 (173)
T ss_pred CCeEEECCCCccCCHHHHHHH---hcCCEEEEEECCHHHHHHHHhcCCC
Confidence 23344444 22223222333 3346799999999999999998753
No 42
>PLN02199 shikimate kinase
Probab=99.60 E-value=6e-14 Score=124.67 Aligned_cols=175 Identities=14% Similarity=0.122 Sum_probs=106.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHhccc
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN-EGKLVPEDVIFALLSKRLEEGYY 140 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~-~g~~~~~~~~~~ll~~~l~~~~~ 140 (273)
++..|+|+|+|||||||+++.||+.+|+++|++|.++++... |..+.+++. .|+....+...+.+.+....
T Consensus 101 ~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~~-----G~sI~eIf~~~GE~~FR~~E~e~L~~L~~~--- 172 (303)
T PLN02199 101 NGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMN-----GTSVAEIFVHHGENFFRGKETDALKKLSSR--- 172 (303)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHhc-----CCCHHHHHHHhCHHHHHHHHHHHHHHHHhc---
Confidence 367899999999999999999999999999999999987533 223444453 45444445555555553322
Q ss_pred CCcceEEE-eC--CCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHH
Q 024067 141 RGESGFIL-DG--IPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKF 217 (273)
Q Consensus 141 ~~~~g~Il-Dg--~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl 217 (273)
.++|| .| .+........|. -..+|+|+++.+++.+|+....... .|.-.+++.+.+.+-+
T Consensus 173 ---~~~VIStGGG~V~~~~n~~~L~----~G~vV~Ldas~E~l~~RL~~~~~~~----------RPLL~~~~~d~~~~~~ 235 (303)
T PLN02199 173 ---YQVVVSTGGGAVIRPINWKYMH----KGISIWLDVPLEALAHRIAAVGTDS----------RPLLHDESGDAYSVAF 235 (303)
T ss_pred ---CCEEEECCCcccCCHHHHHHHh----CCeEEEEECCHHHHHHHHhhcCCCC----------CCcCCCCCcchhhhHH
Confidence 23444 33 222333333333 2579999999999999997521110 1211112222222112
Q ss_pred HHHHHhhHHHHHHHHhcCcEEEE-----------eCCCChhHHHHHHHHHHHhcC
Q 024067 218 RIYAEQGKSLEDYYSKQRKLLNF-----------QVAAAPGETWQGLLSALHLQH 261 (273)
Q Consensus 218 ~~y~~~~~~l~~~y~~~~~~~~i-----------d~~~s~~ev~~~I~~~l~~~~ 261 (273)
+...+..+....+|++.+..+.+ -.+.+++++..+|...+....
T Consensus 236 ~~L~~L~~~R~plY~~Ad~~V~~~~~~~~~~~~~td~~s~~ei~~eIl~~l~~~l 290 (303)
T PLN02199 236 KRLSAIWDERGEAYTNANARVSLENIAAKRGYKNVSDLTPTEIAIEAFEQVLSFL 290 (303)
T ss_pred HHHHHHHHHHHHHHHhCCEEEecccccccccccccCCCCHHHHHHHHHHHHHHHH
Confidence 22333344556678876544431 124789999999988886543
No 43
>PRK13946 shikimate kinase; Provisional
Probab=99.59 E-value=9.2e-14 Score=116.77 Aligned_cols=168 Identities=14% Similarity=0.122 Sum_probs=100.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccC
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~ 141 (273)
.+..|+|+|+|||||||+++.||+++|++++++|.++.+.. +.+..+.+.. .|.....+....++...+..
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~~~~~~--g~~~~e~~~~---~ge~~~~~~e~~~l~~l~~~---- 79 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEIERAA--RMTIAEIFAA---YGEPEFRDLERRVIARLLKG---- 79 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHHHHHHh--CCCHHHHHHH---HCHHHHHHHHHHHHHHHHhc----
Confidence 56689999999999999999999999999999998776543 2222222211 23222223334444443322
Q ss_pred CcceEEEeC--CCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHHH
Q 024067 142 GESGFILDG--IPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRI 219 (273)
Q Consensus 142 ~~~g~IlDg--~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~ 219 (273)
...+|..| .+......+.|. .-.++|+|++|.+++.+|+..|...+. ....+..+.+++.++.
T Consensus 80 -~~~Vi~~ggg~~~~~~~r~~l~---~~~~~v~L~a~~e~~~~Rl~~r~~rp~-----------~~~~~~~~~i~~~~~~ 144 (184)
T PRK13946 80 -GPLVLATGGGAFMNEETRAAIA---EKGISVWLKADLDVLWERVSRRDTRPL-----------LRTADPKETLARLMEE 144 (184)
T ss_pred -CCeEEECCCCCcCCHHHHHHHH---cCCEEEEEECCHHHHHHHhcCCCCCCc-----------CCCCChHHHHHHHHHH
Confidence 23344443 233344444443 235789999999999999987753220 0111112233322222
Q ss_pred HHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhcC
Q 024067 220 YAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQH 261 (273)
Q Consensus 220 y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~~ 261 (273)
...+|.+.+ +.......+++++.+.|.+.+....
T Consensus 145 -------R~~~y~~~d-l~i~~~~~~~~~~~~~i~~~i~~~~ 178 (184)
T PRK13946 145 -------RYPVYAEAD-LTVASRDVPKEVMADEVIEALAAYL 178 (184)
T ss_pred -------HHHHHHhCC-EEEECCCCCHHHHHHHHHHHHHHhh
Confidence 233566544 3333445799999999999997653
No 44
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=99.59 E-value=4.3e-14 Score=119.33 Aligned_cols=168 Identities=15% Similarity=0.134 Sum_probs=93.2
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCC--CCHHHHH--------HHHH
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKL--VPEDVIF--------ALLS 132 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~--~~~~~~~--------~ll~ 132 (273)
++.|+|.|+|||||||+++.|++.++.....+ +....+..+++++.+++++..+.. ....... ..+.
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v---~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~r~~~~~ 79 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQENGYDV---LFTREPGGTPIGEKIRELLLNENDEPLTDKAEALLFAADRHEHLE 79 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeE---EEEeCCCCChHHHHHHHHHcCCCccCCCHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999985421111 001123356778888887554322 2221111 1111
Q ss_pred HHHHhcccCCcceEEEeCC----------CCCHH--HHHHHH-hhCC--CceEEEEccCHHHHHHHHhcCCcCCCccccc
Q 024067 133 KRLEEGYYRGESGFILDGI----------PRTRI--QAEILD-QIVD--VDLVINFKSIEDQLVKRNLESEAFSPHKEFL 197 (273)
Q Consensus 133 ~~l~~~~~~~~~g~IlDg~----------P~~~~--qa~~l~-~~~~--~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y 197 (273)
..+... ...+..+|+|.+ +++.. +...+. .... ||++|+|+++++++++|+..|....
T Consensus 80 ~~i~~~-l~~~~~VI~DR~~~s~~ay~~~~~~~~~~~~~~l~~~~~~~~~d~~i~l~~~~~~~~~R~~~r~~~~------ 152 (195)
T TIGR00041 80 DKIKPA-LAEGKLVISDRYVFSSIAYQGGARGIDEDLVLELNEDALGDMPDLTIYLDIDPEVALERLRKRGELD------ 152 (195)
T ss_pred HHHHHH-HhCCCEEEECCcccHHHHHccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHhcCCcc------
Confidence 222211 112345778853 32211 222222 2233 9999999999999999998886310
Q ss_pred ccCCCCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHH
Q 024067 198 RLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGL 253 (273)
Q Consensus 198 ~~~~~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I 253 (273)
. ......+.++...+.| .+.+.+...++.||+++++++|.++|
T Consensus 153 -----~-~~~~~~~~~~~~~~~y-------~~~~~~~~~~~~id~~~~~e~v~~~i 195 (195)
T TIGR00041 153 -----R-EEFEKLDFFEKVRQRY-------LELADKEKSIHVIDATNSVEEVEQDI 195 (195)
T ss_pred -----h-HHHHHHHHHHHHHHHH-------HHHHcCCCcEEEEeCCCCHHHHHhhC
Confidence 0 0000011111111222 22233334688999999999998765
No 45
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=99.59 E-value=4.1e-14 Score=119.91 Aligned_cols=167 Identities=15% Similarity=0.138 Sum_probs=108.6
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCC-----CCHH------------
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKL-----VPED------------ 125 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~-----~~~~------------ 125 (273)
+..|.|+|++||||||+++.|++ +|+++|++|.+.++.+.++++.++.+.+.+..+.. +...
T Consensus 2 ~~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~ 80 (194)
T PRK00081 2 MLIIGLTGGIGSGKSTVANLFAE-LGAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDPEA 80 (194)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-cCCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCHHH
Confidence 45799999999999999999998 99999999999999888888888888777643222 2221
Q ss_pred ------HHHHHHHHHHHhcc--cCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCccccc
Q 024067 126 ------VIFALLSKRLEEGY--YRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFL 197 (273)
Q Consensus 126 ------~~~~ll~~~l~~~~--~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y 197 (273)
++...+.+.+...- .....-+|+|. |.-.+ . .+ ...+|.+|+++||+++..+|+..|...
T Consensus 81 ~~~L~~i~hP~v~~~~~~~~~~~~~~~~vv~e~-pll~e-~-~~--~~~~D~vi~V~a~~e~~~~Rl~~R~~~------- 148 (194)
T PRK00081 81 RKKLEAILHPLIREEILEQLQEAESSPYVVLDI-PLLFE-N-GL--EKLVDRVLVVDAPPETQLERLMARDGL------- 148 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCEEEEEe-hHhhc-C-Cc--hhhCCeEEEEECCHHHHHHHHHHcCCC-------
Confidence 12222222222110 11123455553 32211 0 01 124799999999999999999988531
Q ss_pred ccCCCCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHh
Q 024067 198 RLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHL 259 (273)
Q Consensus 198 ~~~~~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~ 259 (273)
+.+.+.+|+.... +..++-...+ +.|+++++++++.+++...+..
T Consensus 149 -----------s~e~~~~ri~~Q~----~~~~~~~~ad--~vI~N~g~~e~l~~qv~~i~~~ 193 (194)
T PRK00081 149 -----------SEEEAEAIIASQM----PREEKLARAD--DVIDNNGDLEELRKQVERLLQE 193 (194)
T ss_pred -----------CHHHHHHHHHHhC----CHHHHHHhCC--EEEECCCCHHHHHHHHHHHHHh
Confidence 2456677766432 2222222222 6678788999999999988753
No 46
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=99.58 E-value=9.1e-14 Score=113.53 Aligned_cols=153 Identities=17% Similarity=0.218 Sum_probs=98.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCCc
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE 143 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~~ 143 (273)
|+|+|+|.||+||||+|++|+ ++|+.+++..+++.+.-- +....+ ..+-..+..+.....+...+. .
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~el~~e~~~-----~~~~de-~r~s~~vD~d~~~~~le~~~~------~ 67 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR-ELGYKVIELNELAKENGL-----YTEYDE-LRKSVIVDVDKLRKRLEELLR------E 67 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH-HhCCceeeHHHHHHhcCC-----eeccCC-ccceEEeeHHHHHHHHHHHhc------c
Confidence 579999999999999999999 999999999988875321 000000 000111233334444444332 3
Q ss_pred ceEEEeCCCCCHHHHHHHHhhCC-CceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHH-HHHHHHH
Q 024067 144 SGFILDGIPRTRIQAEILDQIVD-VDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWK-EKFRIYA 221 (273)
Q Consensus 144 ~g~IlDg~P~~~~qa~~l~~~~~-~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~-~rl~~y~ 221 (273)
.+.|+|+. +.+..+ +|+||.|.|++++|.+|+.+|+..+ .+.. |.+. +.+....
T Consensus 68 ~~~Ivd~H---------~~hl~~~~dlVvVLR~~p~~L~~RLk~RGy~~------------eKI~---ENveAEi~~vi~ 123 (180)
T COG1936 68 GSGIVDSH---------LSHLLPDCDLVVVLRADPEVLYERLKGRGYSE------------EKIL---ENVEAEILDVIL 123 (180)
T ss_pred CCeEeech---------hhhcCCCCCEEEEEcCCHHHHHHHHHHcCCCH------------HHHH---HHHHHHHHHHHH
Confidence 67899875 223334 8999999999999999999998632 0111 1111 2222211
Q ss_pred HhhHHHHHHHHhcCcEEEEeCC-CChhHHHHHHHHHHHh
Q 024067 222 EQGKSLEDYYSKQRKLLNFQVA-AAPGETWQGLLSALHL 259 (273)
Q Consensus 222 ~~~~~l~~~y~~~~~~~~id~~-~s~~ev~~~I~~~l~~ 259 (273)
.+-......+++||.+ .+++++.+.|...+..
T Consensus 124 ------~EA~E~~~~v~evdtt~~s~ee~~~~i~~ii~~ 156 (180)
T COG1936 124 ------IEAVERFEAVIEVDTTNRSPEEVAEEIIDIIGG 156 (180)
T ss_pred ------HHHHHhcCceEEEECCCCCHHHHHHHHHHHHcc
Confidence 1111222468889975 5899999999999984
No 47
>PRK00698 tmk thymidylate kinase; Validated
Probab=99.58 E-value=1.9e-13 Score=116.04 Aligned_cols=176 Identities=14% Similarity=0.169 Sum_probs=102.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHC--CCCCCHHHHHHHH-------H
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNE--GKLVPEDVIFALL-------S 132 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~--g~~~~~~~~~~ll-------~ 132 (273)
+++.|+|.|++||||||+++.|++.++.....+ .+..+ +.++..++.+++.+.. ....+.......+ .
T Consensus 2 ~~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~--~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 78 (205)
T PRK00698 2 RGMFITIEGIDGAGKSTQIELLKELLEQQGRDV--VFTRE-PGGTPLGEKLRELLLDPNEEMDDKTELLLFYAARAQHLE 78 (205)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCce--eEeeC-CCCChHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999884321110 11112 2346688888888763 2222222211111 1
Q ss_pred HHHHhcccCCcceEEEeCCCCCH------------HHHHHHHhh----CCCceEEEEccCHHHHHHHHhcCCcCCCcccc
Q 024067 133 KRLEEGYYRGESGFILDGIPRTR------------IQAEILDQI----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEF 196 (273)
Q Consensus 133 ~~l~~~~~~~~~g~IlDg~P~~~------------~qa~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~ 196 (273)
..+... ...+..+|+|.++-+. .....+... ..||++|+|++|++++.+|+..|....
T Consensus 79 ~~i~~~-l~~g~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pd~~i~l~~~~~~~~~Rl~~R~~~~----- 152 (205)
T PRK00698 79 EVIKPA-LARGKWVISDRFIDSSLAYQGGGRGLDIDLLLALNDFALGGFRPDLTLYLDVPPEVGLARIRARGELD----- 152 (205)
T ss_pred HHHHHH-HHCCCEEEECCchhHHHHHCCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCCcc-----
Confidence 111111 0124678898554331 112222221 469999999999999999999886311
Q ss_pred cccCCCCCCCCCcHHHHHHHHH-HHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhc
Q 024067 197 LRLGGARFSAADAASAWKEKFR-IYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQ 260 (273)
Q Consensus 197 y~~~~~~~~~~d~~e~~~~rl~-~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~ 260 (273)
..+.....+.+++. .|.. +.+.+ ...++.||+++++++++++|.+.+...
T Consensus 153 --------~~~~~~~~~~~~~~~~y~~----~~~~~--~~~~~~Id~~~~~e~v~~~i~~~i~~~ 203 (205)
T PRK00698 153 --------RIEQEGLDFFERVREGYLE----LAEKE--PERIVVIDASQSLEEVHEDILAVIKAW 203 (205)
T ss_pred --------hhhhhhHHHHHHHHHHHHH----HHHhC--CCeEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 00111112333333 2322 22211 235788999999999999999988653
No 48
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=99.57 E-value=1.6e-13 Score=116.37 Aligned_cols=166 Identities=14% Similarity=0.151 Sum_probs=107.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCC------CCH-------------
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKL------VPE------------- 124 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~------~~~------------- 124 (273)
++|.|+|++||||||+++.|++.+|+++||+|++.++.+.++++.++.+.+.+..+.. +..
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d~~~ 81 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFNDPEE 81 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCCHHH
Confidence 4789999999999999999999999999999999999888888888888877743221 221
Q ss_pred -----HHHHHHHHHHHHhc--ccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCccccc
Q 024067 125 -----DVIFALLSKRLEEG--YYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFL 197 (273)
Q Consensus 125 -----~~~~~ll~~~l~~~--~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y 197 (273)
+++..++...+... ......-+|+|. |.-.+. .+. ..+|.+|+++||.++..+|+..|..
T Consensus 82 ~~~l~~i~hP~i~~~~~~~~~~~~~~~~vv~e~-pll~E~--~~~--~~~D~ii~V~a~~e~r~~Rl~~R~g-------- 148 (195)
T PRK14730 82 RRWLENLIHPYVRERFEEELAQLKSNPIVVLVI-PLLFEA--KLT--DLCSEIWVVDCSPEQQLQRLIKRDG-------- 148 (195)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEe-HHhcCc--chH--hCCCEEEEEECCHHHHHHHHHHcCC--------
Confidence 11122222222211 011123445542 322110 011 2579999999999999999998852
Q ss_pred ccCCCCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHH
Q 024067 198 RLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALH 258 (273)
Q Consensus 198 ~~~~~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~ 258 (273)
-+.+.+.+|+... . +....-...+ +.|+++++.+++.+++...+.
T Consensus 149 ----------~s~e~~~~ri~~Q---~-~~~~k~~~aD--~vI~N~g~~e~l~~qv~~~l~ 193 (195)
T PRK14730 149 ----------LTEEEAEARINAQ---W-PLEEKVKLAD--VVLDNSGDLEKLYQQVDQLLK 193 (195)
T ss_pred ----------CCHHHHHHHHHhC---C-CHHHHHhhCC--EEEECCCCHHHHHHHHHHHHh
Confidence 1244566666531 1 2222112223 466878999999999988764
No 49
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.56 E-value=7e-13 Score=107.09 Aligned_cols=169 Identities=19% Similarity=0.194 Sum_probs=100.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccC-CChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCC
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSP-RSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRG 142 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~-~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~ 142 (273)
++|.|.|+|||||||+|+.||+++|++++|.|.+.|+-... +-++ .++..+-++.-.+ |..+-+...+...
T Consensus 1 m~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e~gmsl-~ef~~~AE~~p~i-D~~iD~rq~e~a~------ 72 (179)
T COG1102 1 MVITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARERGMSL-EEFSRYAEEDPEI-DKEIDRRQKELAK------ 72 (179)
T ss_pred CEEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHHcCCCH-HHHHHHHhcCchh-hHHHHHHHHHHHH------
Confidence 57899999999999999999999999999999999965432 1121 2222333322111 2222222222222
Q ss_pred cceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHHHHHH
Q 024067 143 ESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAE 222 (273)
Q Consensus 143 ~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~y~~ 222 (273)
..++||+|- ...|-....+|+.|+|.+|.++..+|+..|..-. -.+.+.+-...=..
T Consensus 73 ~~nvVlegr------LA~Wi~k~~adlkI~L~Apl~vRa~Ria~REgi~-----------------~~~a~~~~~~RE~s 129 (179)
T COG1102 73 EGNVVLEGR------LAGWIVREYADLKIWLKAPLEVRAERIAKREGID-----------------VDEALAETVEREES 129 (179)
T ss_pred cCCeEEhhh------hHHHHhccccceEEEEeCcHHHHHHHHHHhcCCC-----------------HHHHHHHHHHHHHH
Confidence 477899873 1111111468999999999999999999986311 11121111111011
Q ss_pred hhHHHHHHHHhc--C---cEEEEeCCC-ChhHHHHHHHHHHHhcCCC
Q 024067 223 QGKSLEDYYSKQ--R---KLLNFQVAA-APGETWQGLLSALHLQHMN 263 (273)
Q Consensus 223 ~~~~l~~~y~~~--~---~~~~id~~~-s~~ev~~~I~~~l~~~~~~ 263 (273)
+.+--.++|.-. + .=++||++. ++++|+.-|...+...+.+
T Consensus 130 e~kRY~~~YgIDidDlSiyDLVinTs~~~~~~v~~il~~aid~~~~~ 176 (179)
T COG1102 130 EKKRYKKIYGIDIDDLSIYDLVINTSKWDPEEVFLILLDAIDALSIK 176 (179)
T ss_pred HHHHHHHHhCCCCccceeeEEEEecccCCHHHHHHHHHHHHHhhccc
Confidence 111122344211 1 124567764 8999999999999877653
No 50
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=99.54 E-value=1.6e-12 Score=109.22 Aligned_cols=169 Identities=13% Similarity=0.127 Sum_probs=98.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHh---CCCeechhHHHHHHccCCChHHHHHHHHHHCCC---CCCHHHHH-------HH
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLL---EVPHISMGSLVRQELSPRSALYKQIANAVNEGK---LVPEDVIF-------AL 130 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~---g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~---~~~~~~~~-------~l 130 (273)
+.|+|.|++||||||+++.|++.+ |..++.+.. +..+..++.+++++..+. ..+..... ..
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 74 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLTRE------PGGTPIGEAIRELLLDPEDEKMDPRAELLLFAADRAQH 74 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeC------CCCCchHHHHHHHHhccCccCCCHHHHHHHHHHHHHHH
Confidence 478999999999999999999998 555543321 223456677777766542 11111111 11
Q ss_pred HHHHHHhcccCCcceEEEeCCCCC------------HHHHHHHHh----hCCCceEEEEccCHHHHHHHHhcCCcCCCcc
Q 024067 131 LSKRLEEGYYRGESGFILDGIPRT------------RIQAEILDQ----IVDVDLVINFKSIEDQLVKRNLESEAFSPHK 194 (273)
Q Consensus 131 l~~~l~~~~~~~~~g~IlDg~P~~------------~~qa~~l~~----~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~ 194 (273)
+.+.+... ...+..+|+|.++.+ ..+...+.. ...|+++|+|+++++++.+|+..|....
T Consensus 75 ~~~~~~~~-~~~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~--- 150 (200)
T cd01672 75 VEEVIKPA-LARGKIVLSDRFVDSSLAYQGAGRGLGEALIEALNDLATGGLKPDLTILLDIDPEVGLARIEARGRDD--- 150 (200)
T ss_pred HHHHHHHH-HhCCCEEEECCCcchHHHhCccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCCcc---
Confidence 11112211 123567888865532 112222221 1368999999999999999999886421
Q ss_pred cccccCCCCCCCCCcHHHHHHHHH-HHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHH
Q 024067 195 EFLRLGGARFSAADAASAWKEKFR-IYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALH 258 (273)
Q Consensus 195 ~~y~~~~~~~~~~d~~e~~~~rl~-~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~ 258 (273)
...+....+.+++. .|. .+...+ ...++.||++.+++++.++|...|.
T Consensus 151 ----------~~~~~~~~~~~~~~~~y~----~~~~~~--~~~~~~id~~~~~e~i~~~i~~~i~ 199 (200)
T cd01672 151 ----------RDEQEGLEFHERVREGYL----ELAAQE--PERIIVIDASQPLEEVLAEILKAIL 199 (200)
T ss_pred ----------hhhhhhHHHHHHHHHHHH----HHHHhC--CCeEEEEeCCCCHHHHHHHHHHHHh
Confidence 00011122223322 222 121111 1358899999999999999998875
No 51
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.54 E-value=1.6e-13 Score=133.05 Aligned_cols=170 Identities=17% Similarity=0.220 Sum_probs=110.5
Q ss_pred CCCCCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHh
Q 024067 59 PPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAV-NEGKLVPEDVIFALLSKRLEE 137 (273)
Q Consensus 59 ~~~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l-~~g~~~~~~~~~~ll~~~l~~ 137 (273)
.|.|..+|+|+|+|||||||+++.||+++|+++||+|+++.+. .|+.|.+++ ..|+....+...+.+.+.+..
T Consensus 2 ~~~~~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~~------~g~si~eif~~~Ge~~FR~~E~~~l~~~~~~ 75 (542)
T PRK14021 2 KPTRRPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIERE------IGMSIPSYFEEYGEPAFREVEADVVADMLED 75 (542)
T ss_pred CCCCCccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHHH------HCcCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4678899999999999999999999999999999999998864 355677766 456656666666666654432
Q ss_pred cccCCcceEEE-eC--CCCCHHHHHHHHhh-CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHH
Q 024067 138 GYYRGESGFIL-DG--IPRTRIQAEILDQI-VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAW 213 (273)
Q Consensus 138 ~~~~~~~g~Il-Dg--~P~~~~qa~~l~~~-~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~ 213 (273)
.+.|| .| .+........|..+ ..-..+|||+++.+++.+|+..+...| .-..+..+.+
T Consensus 76 ------~~~VIs~GGG~v~~~~n~~~L~~~~~~~g~vv~L~~~~~~l~~Rl~~~~~RP------------ll~~~~~~~~ 137 (542)
T PRK14021 76 ------FDGIFSLGGGAPMTPSTQHALASYIAHGGRVVYLDADPKEAMERANRGGGRP------------MLNGDANKRW 137 (542)
T ss_pred ------CCeEEECCCchhCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHhCCCCCC------------CCCCCcHHHH
Confidence 23344 32 34444444444322 223479999999999999996543211 1111112222
Q ss_pred HHHHHHHHHhhHHHHHHHHhcCcEEEEeCC-CChhHHHHHHHHHHHhc
Q 024067 214 KEKFRIYAEQGKSLEDYYSKQRKLLNFQVA-AAPGETWQGLLSALHLQ 260 (273)
Q Consensus 214 ~~rl~~y~~~~~~l~~~y~~~~~~~~id~~-~s~~ev~~~I~~~l~~~ 260 (273)
+ . .......+|++... +.||++ .+++++.++|.+.+...
T Consensus 138 ~----~---l~~~R~~~Y~~~Ad-~~i~~~~~~~~~~~~~i~~~~~~~ 177 (542)
T PRK14021 138 K----K---LFKQRDPVFRQVAN-VHVHTRGLTPQAAAKKLIDMVAER 177 (542)
T ss_pred H----H---HHHHHHHHHHhhCC-EEEECCCCCHHHHHHHHHHHHHhc
Confidence 2 2 12223446665222 445544 58999999999988754
No 52
>PRK00131 aroK shikimate kinase; Reviewed
Probab=99.53 E-value=2.4e-13 Score=112.10 Aligned_cols=166 Identities=17% Similarity=0.224 Sum_probs=94.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccC
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~ 141 (273)
.++.|+|+|+|||||||+|+.||+.+|+++++.|+++++.... +....+. ..|.....+....++...+..
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~~~~~~~g~--~~~~~~~---~~g~~~~~~~~~~~~~~l~~~---- 73 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLIEARAGK--SIPEIFE---EEGEAAFRELEEEVLAELLAR---- 73 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcCC--CHHHHHH---HHCHHHHHHHHHHHHHHHHhc----
Confidence 4678999999999999999999999999999999888754321 2221111 122211122233333333321
Q ss_pred CcceEEEeCC--CCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHHH
Q 024067 142 GESGFILDGI--PRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRI 219 (273)
Q Consensus 142 ~~~g~IlDg~--P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~ 219 (273)
...+|..|. .........|. ....+|+|++|.+.+.+|+..+...+ ....++..+.+++.+..
T Consensus 74 -~~~vi~~g~~~~~~~~~r~~l~---~~~~~v~l~~~~~~~~~R~~~~~~r~-----------~~~~~~~~~~~~~~~~~ 138 (175)
T PRK00131 74 -HNLVISTGGGAVLREENRALLR---ERGTVVYLDASFEELLRRLRRDRNRP-----------LLQTNDPKEKLRDLYEE 138 (175)
T ss_pred -CCCEEEeCCCEeecHHHHHHHH---hCCEEEEEECCHHHHHHHhcCCCCCC-----------cCCCCChHHHHHHHHHH
Confidence 123333331 11222223332 34589999999999999998765311 00112222233322222
Q ss_pred HHHhhHHHHHHHHhcCcEEEEeC-CCChhHHHHHHHHHHHh
Q 024067 220 YAEQGKSLEDYYSKQRKLLNFQV-AAAPGETWQGLLSALHL 259 (273)
Q Consensus 220 y~~~~~~l~~~y~~~~~~~~id~-~~s~~ev~~~I~~~l~~ 259 (273)
. . ..|..... +.||+ +.+++++.+.|.+.+..
T Consensus 139 ~----~---~~~~~~~d-l~idt~~~~~~e~~~~I~~~v~~ 171 (175)
T PRK00131 139 R----D---PLYEEVAD-ITVETDGRSPEEVVNEILEKLEA 171 (175)
T ss_pred H----H---HHHHhhcC-eEEeCCCCCHHHHHHHHHHHHHh
Confidence 1 1 22333112 44664 56899999999999864
No 53
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=99.53 E-value=1e-12 Score=108.28 Aligned_cols=162 Identities=21% Similarity=0.202 Sum_probs=93.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCC-ChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCC
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPR-SALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRG 142 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~-~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~ 142 (273)
++|+|.|++||||||+|+.|++++|+++++.++++++..... .+. ..+....... + .+...+...+... +..
T Consensus 1 ~iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~---~--~~~~~~~~~i~~~-~~~ 73 (171)
T TIGR02173 1 MIITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRELAAKMGLDL-IEFLNYAEEN---P--EIDKKIDRRIHEI-ALK 73 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCceecHHHHHHHHHHHcCCCH-HHHHHHHhcC---c--HHHHHHHHHHHHH-Hhc
Confidence 478999999999999999999999999999999887643211 111 1111111111 1 1122222222221 112
Q ss_pred cceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHHHHHH
Q 024067 143 ESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAE 222 (273)
Q Consensus 143 ~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~y~~ 222 (273)
..++|+||.-.... + ...+|++|+|++|.+++.+|+..|...+ .+...+++..-..
T Consensus 74 ~~~~Vi~g~~~~~~----~--~~~~d~~v~v~a~~~~r~~R~~~R~~~s------------------~~~a~~~~~~~d~ 129 (171)
T TIGR02173 74 EKNVVLESRLAGWI----V--REYADVKIWLKAPLEVRARRIAKREGKS------------------LTVARSETIEREE 129 (171)
T ss_pred CCCEEEEeccccee----e--cCCcCEEEEEECCHHHHHHHHHHccCCC------------------HHHHHHHHHHHHH
Confidence 46789998533211 1 1247799999999999999999886311 2222332221111
Q ss_pred hh-HHHHHHHHh-----cCcEEEEeCCC-ChhHHHHHHHHHH
Q 024067 223 QG-KSLEDYYSK-----QRKLLNFQVAA-APGETWQGLLSAL 257 (273)
Q Consensus 223 ~~-~~l~~~y~~-----~~~~~~id~~~-s~~ev~~~I~~~l 257 (273)
.. +-...||.. ...=+.||++. ++++ .+.|.+++
T Consensus 130 ~~~~~~~~~~~~~~~~~~~ydl~i~t~~~~~~~-~~~i~~~~ 170 (171)
T TIGR02173 130 SEKRRYLKFYGIDIDDLSIYDLVINTSNWDPNN-VDIILDAL 170 (171)
T ss_pred HHHHHHHHHhCCCccccccccEEEECCCCCHHH-HHHHHHHh
Confidence 11 111233422 11226778764 8999 99888765
No 54
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=99.53 E-value=4e-13 Score=114.44 Aligned_cols=167 Identities=13% Similarity=0.120 Sum_probs=107.9
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCH-----H-------------
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPE-----D------------- 125 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~-----~------------- 125 (273)
+.|.|+|++||||||+++.|++ +|+++|+.|++.++.+.++++..+.+.+.+..+...++ .
T Consensus 2 ~~igitG~igsGKst~~~~l~~-~g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~~~~~~~g~idR~~L~~~vF~~~~~~ 80 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS-EGFLIVDADQVARDIVEPGQPALAELAEAFGDDILNPDGTLDRAGLAAKAFASPEQT 80 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEeCcHHHHHHHhcCCHHHHHHHHHhCccccCCCChhhHHHHHHHHhCCHHHH
Confidence 5789999999999999999997 89999999999999888888888888888766544332 0
Q ss_pred -----HHHHHHHHHHHhc---ccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCccccc
Q 024067 126 -----VIFALLSKRLEEG---YYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFL 197 (273)
Q Consensus 126 -----~~~~ll~~~l~~~---~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y 197 (273)
++...+...+... ....+..+++-..|.-.+. .....+|.+|+++||.++.++|+..|+.-
T Consensus 81 ~~le~i~hP~v~~~~~~~~~~~~~~~~~~vv~e~plL~e~----g~~~~~D~vi~V~a~~e~ri~Rl~~R~g~------- 149 (200)
T PRK14734 81 ALLNAITHPRIAEETARRFNEARAQGAKVAVYDMPLLVEK----GLDRKMDLVVVVDVDVEERVRRLVEKRGL------- 149 (200)
T ss_pred HHHHHhhCHHHHHHHHHHHHHHHhcCCCEEEEEeeceeEc----CccccCCeEEEEECCHHHHHHHHHHcCCC-------
Confidence 1111111111110 0001122333323321110 00125799999999999999999988521
Q ss_pred ccCCCCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHh
Q 024067 198 RLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHL 259 (273)
Q Consensus 198 ~~~~~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~ 259 (273)
+.+.+.+|+..+... ..+.... .+.|+++++++++.+++..++..
T Consensus 150 -----------s~e~~~~ri~~Q~~~----~~k~~~a--d~vI~N~g~~e~l~~~v~~~~~~ 194 (200)
T PRK14734 150 -----------DEDDARRRIAAQIPD----DVRLKAA--DIVVDNNGTREQLLAQVDGLIAE 194 (200)
T ss_pred -----------CHHHHHHHHHhcCCH----HHHHHhC--CEEEECcCCHHHHHHHHHHHHHH
Confidence 245667776654322 1112222 35688899999999999988754
No 55
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=99.53 E-value=7.1e-13 Score=110.27 Aligned_cols=162 Identities=14% Similarity=0.214 Sum_probs=96.1
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHhcccC
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN-EGKLVPEDVIFALLSKRLEEGYYR 141 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~-~g~~~~~~~~~~ll~~~l~~~~~~ 141 (273)
...|+|+|++||||||+++.|++.++++++++|..+.+... .. +..++. .|.....+...+++.. +..
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~i~~~~g--~~----i~~~~~~~g~~~fr~~e~~~l~~-l~~---- 72 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTG--AD----IGWVFDVEGEEGFRDREEKVINE-LTE---- 72 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCchHHHHhC--cC----HhHHHHHhCHHHHHHHHHHHHHH-HHh----
Confidence 45799999999999999999999999999999987765431 11 222222 2322222223334433 221
Q ss_pred CcceEEEeC---CCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHH
Q 024067 142 GESGFILDG---IPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFR 218 (273)
Q Consensus 142 ~~~g~IlDg---~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~ 218 (273)
..++|+.. .+.+......|. ..+.+|+|++|.+++.+|+..+...| ...+... .+.+.
T Consensus 73 -~~~~vi~~ggg~v~~~~~~~~l~---~~~~vv~L~~~~e~~~~Ri~~~~~rP------------~~~~~~~---~~~~~ 133 (172)
T PRK05057 73 -KQGIVLATGGGSVKSRETRNRLS---ARGVVVYLETTIEKQLARTQRDKKRP------------LLQVDDP---REVLE 133 (172)
T ss_pred -CCCEEEEcCCchhCCHHHHHHHH---hCCEEEEEeCCHHHHHHHHhCCCCCC------------CCCCCCH---HHHHH
Confidence 23455542 222323334443 34689999999999999997554322 1112211 11222
Q ss_pred HHHHhhHHHHHHHHh-cCcEEEEeCC-CChhHHHHHHHHHHHh
Q 024067 219 IYAEQGKSLEDYYSK-QRKLLNFQVA-AAPGETWQGLLSALHL 259 (273)
Q Consensus 219 ~y~~~~~~l~~~y~~-~~~~~~id~~-~s~~ev~~~I~~~l~~ 259 (273)
.+.+. ...+|++ .+ +.||++ .+++++.+.|.+.+..
T Consensus 134 ~l~~~---R~~~Y~~~Ad--~~idt~~~s~~ei~~~i~~~l~~ 171 (172)
T PRK05057 134 ALANE---RNPLYEEIAD--VTIRTDDQSAKVVANQIIHMLES 171 (172)
T ss_pred HHHHH---HHHHHHhhCC--EEEECCCCCHHHHHHHHHHHHhh
Confidence 22222 2445666 34 456655 5899999999988854
No 56
>PRK04182 cytidylate kinase; Provisional
Probab=99.53 E-value=4.6e-13 Score=111.14 Aligned_cols=168 Identities=22% Similarity=0.231 Sum_probs=94.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccC-CChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCC
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSP-RSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRG 142 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~-~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~ 142 (273)
++|+|+|+|||||||+|+.|++++|+++++++++++..... +... ..+ ...+...+. +...+...+... ...
T Consensus 1 ~~I~i~G~~GsGKstia~~la~~lg~~~id~~~~~~~~~~~~g~~~-~~~---~~~~~~~~~--~~~~~~~~~~~~-~~~ 73 (180)
T PRK04182 1 MIITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRELAKERGMSL-EEF---NKYAEEDPE--IDKEIDRRQLEI-AEK 73 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCcEecHHHHHHHHHHHcCCCH-HHH---HHHhhcCch--HHHHHHHHHHHH-Hhc
Confidence 47899999999999999999999999999999988864421 1111 112 222222221 111121212111 012
Q ss_pred cceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHHHHHH
Q 024067 143 ESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAE 222 (273)
Q Consensus 143 ~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~y~~ 222 (273)
..++|+||.-... .+. ..++++|+|++|.+++.+|+..|...+ ..+....++++-..
T Consensus 74 ~~~~Vi~g~~~~~----~~~--~~~~~~V~l~a~~e~~~~Rl~~r~~~~--------------~~~a~~~~~~~d~~--- 130 (180)
T PRK04182 74 EDNVVLEGRLAGW----MAK--DYADLKIWLKAPLEVRAERIAEREGIS--------------VEEALEETIEREES--- 130 (180)
T ss_pred CCCEEEEEeecce----Eec--CCCCEEEEEECCHHHHHHHHHhccCCC--------------HHHHHHHHHHHHHH---
Confidence 4678998742111 111 127899999999999999998875211 01111111111111
Q ss_pred hhHHHHHHHHh-----cCcEEEEeCC-CChhHHHHHHHHHHHhcC
Q 024067 223 QGKSLEDYYSK-----QRKLLNFQVA-AAPGETWQGLLSALHLQH 261 (273)
Q Consensus 223 ~~~~l~~~y~~-----~~~~~~id~~-~s~~ev~~~I~~~l~~~~ 261 (273)
...-...+|.. ...-+.||++ .+++++.+.|...+....
T Consensus 131 ~~~~~~~~~~~~~~~~~~~d~~idt~~~~~~~~~~~I~~~~~~~~ 175 (180)
T PRK04182 131 EAKRYKEYYGIDIDDLSIYDLVINTSRWDPEGVFDIILTAIDKLL 175 (180)
T ss_pred HHHHHHHHhCCCccccccccEEEECCCCCHHHHHHHHHHHHHHHh
Confidence 00111223310 1112567765 489999999999987653
No 57
>PRK06762 hypothetical protein; Provisional
Probab=99.51 E-value=9.8e-13 Score=108.31 Aligned_cols=158 Identities=16% Similarity=0.160 Sum_probs=96.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh--CCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhccc
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLL--EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYY 140 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~--g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~ 140 (273)
++.|+|+|+|||||||+|+.|++.+ ++.+++.|. +++.+..... ..+ ....+.+..++...+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~-~r~~l~~~~~---------~~~-~~~~~~~~~~~~~~~~~--- 67 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDV-VRRDMLRVKD---------GPG-NLSIDLIEQLVRYGLGH--- 67 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHH-HHHHhccccC---------CCC-CcCHHHHHHHHHHHHhC---
Confidence 5789999999999999999999999 567788655 4433321100 001 11122333333333332
Q ss_pred CCcceEEEeCCCCCHHHHHHHHh----hCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHH
Q 024067 141 RGESGFILDGIPRTRIQAEILDQ----IVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEK 216 (273)
Q Consensus 141 ~~~~g~IlDg~P~~~~qa~~l~~----~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~r 216 (273)
+..+|+|+..........+.. ...+..+|+|++|.+++++|...|.... .-.++.++.+
T Consensus 68 --g~~vild~~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~~~---------------~~~~~~l~~~ 130 (166)
T PRK06762 68 --CEFVILEGILNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTRPKSH---------------EFGEDDMRRW 130 (166)
T ss_pred --CCEEEEchhhccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhcccccc---------------cCCHHHHHHH
Confidence 467899987544433333332 2346789999999999999999886311 0123445544
Q ss_pred HHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhc
Q 024067 217 FRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQ 260 (273)
Q Consensus 217 l~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~ 260 (273)
+.... ++ +. .+ .+.++.+.++++|.++|...+..+
T Consensus 131 ~~~~~----~~---~~-~~-~~~~~~~~~~~~v~~~i~~~~~~~ 165 (166)
T PRK06762 131 WNPHD----TL---GV-IG-ETIFTDNLSLKDIFDAILTDIGLR 165 (166)
T ss_pred HhhcC----Cc---CC-CC-eEEecCCCCHHHHHHHHHHHhccC
Confidence 43321 11 10 12 344566679999999999987653
No 58
>PRK04040 adenylate kinase; Provisional
Probab=99.51 E-value=1.5e-12 Score=109.80 Aligned_cols=171 Identities=14% Similarity=0.186 Sum_probs=100.3
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh--CCCeechhHHHHHHccCCC--hHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhc
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLL--EVPHISMGSLVRQELSPRS--ALYKQIANAVNEGKLVPEDVIFALLSKRLEEG 138 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~--g~~~is~~dllr~~~~~~~--~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~ 138 (273)
++.|+|+|+|||||||+++.|++++ ++.+++.++++++...... .....++.. .......+..+..+.+...
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a~~~g~~~~~d~~r~l----~~~~~~~~~~~a~~~i~~~ 77 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVAKEEGLVEHRDEMRKL----PPEEQKELQREAAERIAEM 77 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHHHHHcCCCCCHHHHhhC----ChhhhHHHHHHHHHHHHHh
Confidence 5789999999999999999999999 8999999999876543221 111222211 0111112223334444332
Q ss_pred ccCCcceEEEeCCCCCH--------HHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcH
Q 024067 139 YYRGESGFILDGIPRTR--------IQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAA 210 (273)
Q Consensus 139 ~~~~~~g~IlDg~P~~~--------~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~ 210 (273)
.....+|+||..... .....+.. ..||.+|+|.++++++++|........ +..+++
T Consensus 78 --~~~~~~~~~~h~~i~~~~g~~~~~~~~~~~~-l~pd~ii~l~a~p~~i~~Rrl~d~~R~-------------R~~es~ 141 (188)
T PRK04040 78 --AGEGPVIVDTHATIKTPAGYLPGLPEWVLEE-LNPDVIVLIEADPDEILMRRLRDETRR-------------RDVETE 141 (188)
T ss_pred --hcCCCEEEeeeeeeccCCCCcCCCCHHHHhh-cCCCEEEEEeCCHHHHHHHHhcccccC-------------CCCCCH
Confidence 223558999843211 12222322 489999999999999988887531000 123445
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHh-cC--cEEEEeCCCChhHHHHHHHHHH
Q 024067 211 SAWKEKFRIYAEQGKSLEDYYSK-QR--KLLNFQVAAAPGETWQGLLSAL 257 (273)
Q Consensus 211 e~~~~rl~~y~~~~~~l~~~y~~-~~--~~~~id~~~s~~ev~~~I~~~l 257 (273)
+.++.++..-+... .+|.. .+ .++.+|-++-+++.+++|...|
T Consensus 142 e~I~~~~~~a~~~a----~~~a~~~g~~~~iI~N~d~~~e~a~~~i~~ii 187 (188)
T PRK04040 142 EDIEEHQEMNRAAA----MAYAVLTGATVKIVENREGLLEEAAEEIVEVL 187 (188)
T ss_pred HHHHHHHHHHHHHH----HHHHHhcCCeEEEEECCCCCHHHHHHHHHHHh
Confidence 66666665443321 22322 12 2344444444999999998876
No 59
>PLN02422 dephospho-CoA kinase
Probab=99.51 E-value=9.2e-13 Score=114.23 Aligned_cols=167 Identities=15% Similarity=0.132 Sum_probs=105.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCC-----CCH--------------
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKL-----VPE-------------- 124 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~-----~~~-------------- 124 (273)
+.|.|+|++||||||+++.|+ ++|+++||+|++.++.+.++++....+.+.+..... +..
T Consensus 2 ~~igltG~igsGKstv~~~l~-~~g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~idR~~L~~~VF~d~~~~ 80 (232)
T PLN02422 2 RVVGLTGGIASGKSTVSNLFK-SSGIPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEVDREKLGQIVFSDPSKR 80 (232)
T ss_pred eEEEEECCCCCCHHHHHHHHH-HCCCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcCCHHHHHHHHhCCHHHH
Confidence 468999999999999999999 689999999999999988887777777766532221 221
Q ss_pred ----HHHHHHHHHHHH----hcccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccc
Q 024067 125 ----DVIFALLSKRLE----EGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEF 196 (273)
Q Consensus 125 ----~~~~~ll~~~l~----~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~ 196 (273)
+++...+...+. .....+..-+|+| .|.-.+ . .+ ...+|.+|+++||.++..+|+..|+..
T Consensus 81 ~~Le~IlHP~V~~~~~~~~~~~~~~~~~~vv~e-ipLL~E-~-~~--~~~~D~vI~V~a~~e~ri~RL~~R~g~------ 149 (232)
T PLN02422 81 QLLNRLLAPYISSGIFWEILKLWLKGCKVIVLD-IPLLFE-T-KM--DKWTKPVVVVWVDPETQLERLMARDGL------ 149 (232)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEE-ehhhhh-c-ch--hhhCCEEEEEECCHHHHHHHHHHcCCC------
Confidence 112222222221 1101112334554 332221 0 01 125799999999999999999998631
Q ss_pred cccCCCCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhc
Q 024067 197 LRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQ 260 (273)
Q Consensus 197 y~~~~~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~ 260 (273)
+.+.+.+|+..-. +..+.-...+ +.|+++++.+++.+++...+...
T Consensus 150 ------------s~eea~~Ri~~Q~----~~eek~~~AD--~VI~N~gs~e~L~~qv~~ll~~l 195 (232)
T PLN02422 150 ------------SEEQARNRINAQM----PLDWKRSKAD--IVIDNSGSLEDLKQQFQKVLEKI 195 (232)
T ss_pred ------------CHHHHHHHHHHcC----ChhHHHhhCC--EEEECCCCHHHHHHHHHHHHHHH
Confidence 2356666663221 1212112222 56777899999999999887654
No 60
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=99.50 E-value=1.3e-12 Score=118.37 Aligned_cols=174 Identities=14% Similarity=0.154 Sum_probs=102.4
Q ss_pred CCCCCCCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHH-CCCCCCHHHHHHHHHHHH
Q 024067 57 GSPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN-EGKLVPEDVIFALLSKRL 135 (273)
Q Consensus 57 ~~~~~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~-~g~~~~~~~~~~ll~~~l 135 (273)
...+.++..|+|+|+|||||||+++.|++++|++++++|..+.+.. |..+.+++. .|.....+...+.+...+
T Consensus 127 ~~~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~i~~~~------G~~i~ei~~~~G~~~fr~~e~~~l~~ll 200 (309)
T PRK08154 127 GRRAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELNREIEREA------GLSVSEIFALYGQEGYRRLERRALERLI 200 (309)
T ss_pred hhhccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHHHHHHh------CCCHHHHHHHHCHHHHHHHHHHHHHHHH
Confidence 3445567899999999999999999999999999999988776542 112233322 232222233344444433
Q ss_pred HhcccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCC-CCCCcHHHHH
Q 024067 136 EEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARF-SAADAASAWK 214 (273)
Q Consensus 136 ~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~-~~~d~~e~~~ 214 (273)
.. ...+||............+.......++|+|+++.+++.+|+..|.... |. ..++..+.++
T Consensus 201 ~~-----~~~~VI~~Ggg~v~~~~~~~~l~~~~~~V~L~a~~e~~~~Rl~~r~~~r-----------p~~~~~~~~e~i~ 264 (309)
T PRK08154 201 AE-----HEEMVLATGGGIVSEPATFDLLLSHCYTVWLKASPEEHMARVRAQGDLR-----------PMADNREAMEDLR 264 (309)
T ss_pred hh-----CCCEEEECCCchhCCHHHHHHHHhCCEEEEEECCHHHHHHHHhcCCCCC-----------CCCCCCChHHHHH
Confidence 32 1224443211111111112222234579999999999999998875321 10 1122233444
Q ss_pred HHHHHHHHhhHHHHHHHHhcCcEEEEeCCC-ChhHHHHHHHHHHHhcC
Q 024067 215 EKFRIYAEQGKSLEDYYSKQRKLLNFQVAA-APGETWQGLLSALHLQH 261 (273)
Q Consensus 215 ~rl~~y~~~~~~l~~~y~~~~~~~~id~~~-s~~ev~~~I~~~l~~~~ 261 (273)
+.+. ....+|+..+ +.||+++ +++++.+.|...+....
T Consensus 265 ~~~~-------~R~~~y~~ad--~~I~t~~~s~ee~~~~I~~~l~~~~ 303 (309)
T PRK08154 265 RILA-------SREPLYARAD--AVVDTSGLTVAQSLARLRELVRPAL 303 (309)
T ss_pred HHHH-------HHHHHHHhCC--EEEECCCCCHHHHHHHHHHHHHHHh
Confidence 3322 2234565433 4567665 89999999999986554
No 61
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=99.48 E-value=9.4e-13 Score=108.12 Aligned_cols=154 Identities=15% Similarity=0.132 Sum_probs=91.1
Q ss_pred EEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCH----HHH---HHHHHHHHHhc
Q 024067 66 WVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPE----DVI---FALLSKRLEEG 138 (273)
Q Consensus 66 Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~----~~~---~~ll~~~l~~~ 138 (273)
|+|+|+|||||||+++.|++.++..+++.|++...... .. ...|....+ ... ...+...+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~~~~~---------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~- 69 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLHPAANI---------EK-MSAGIPLNDDDRWPWLQNLNDASTAAAAK- 69 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeCccccChHHH---------HH-HHcCCCCChhhHHHHHHHHHHHHHHHHhc-
Confidence 57899999999999999999999999999887432100 00 001111111 111 1222222222
Q ss_pred ccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHH
Q 024067 139 YYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFR 218 (273)
Q Consensus 139 ~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~ 218 (273)
+...|+|...........+......-.+|+|+++.+++.+|+..|..+. ...+.+..++.
T Consensus 70 ----~~~~Vi~~t~~~~~~r~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~----------------~~~~~i~~~~~ 129 (163)
T TIGR01313 70 ----NKVGIITCSALKRHYRDILREAEPNLHFIYLSGDKDVILERMKARKGHF----------------MKADMLESQFA 129 (163)
T ss_pred ----CCCEEEEecccHHHHHHHHHhcCCCEEEEEEeCCHHHHHHHHHhccCCC----------------CCHHHHHHHHH
Confidence 2233665443334444444433333357999999999999999886321 01234555444
Q ss_pred HHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHH
Q 024067 219 IYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSAL 257 (273)
Q Consensus 219 ~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l 257 (273)
.+.. |. +.+ ..++.||++++++++.++|...|
T Consensus 130 ~~~~---~~---~~e-~~~~~id~~~~~~~~~~~~~~~~ 161 (163)
T TIGR01313 130 ALEE---PL---ADE-TDVLRVDIDQPLEGVEEDCIAVV 161 (163)
T ss_pred HhCC---CC---CCC-CceEEEECCCCHHHHHHHHHHHH
Confidence 3321 10 111 24789999999999999998876
No 62
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=99.48 E-value=8.2e-13 Score=105.23 Aligned_cols=158 Identities=19% Similarity=0.229 Sum_probs=101.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccC
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~ 141 (273)
..+.|+|+|-||+||||+|++||+.+|++||.+++++++... .....+-. +--.+.++-+...|...+..
T Consensus 6 ~~PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn~l-----~~gyDE~y-~c~i~DEdkv~D~Le~~m~~---- 75 (176)
T KOG3347|consen 6 ERPNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKENNL-----YEGYDEEY-KCHILDEDKVLDELEPLMIE---- 75 (176)
T ss_pred cCCCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhhcc-----hhcccccc-cCccccHHHHHHHHHHHHhc----
Confidence 457899999999999999999999999999999999986432 11100000 01134566777777777764
Q ss_pred CcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHH--HH
Q 024067 142 GESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKF--RI 219 (273)
Q Consensus 142 ~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl--~~ 219 (273)
.|.|+|-.....--- -.+|+||.|.||.++|.+||..|..+. ..+++-+ ..
T Consensus 76 --Gg~IVDyHgCd~Fpe------rwfdlVvVLr~~~s~LY~RL~sRgY~e-------------------~Ki~eNiecEI 128 (176)
T KOG3347|consen 76 --GGNIVDYHGCDFFPE------RWFDLVVVLRTPNSVLYDRLKSRGYSE-------------------KKIKENIECEI 128 (176)
T ss_pred --CCcEEeecccCccch------hheeEEEEEecCchHHHHHHHHcCCCH-------------------HHHhhhcchHH
Confidence 678898433221111 246899999999999999999887431 1122111 12
Q ss_pred HHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHH
Q 024067 220 YAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALH 258 (273)
Q Consensus 220 y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~ 258 (273)
|.-..+...+.|... +++++.+ .+.+++...|...+.
T Consensus 129 fgv~~eea~eSy~~~-iV~eL~s-~~~Eem~~ni~ri~~ 165 (176)
T KOG3347|consen 129 FGVVLEEARESYSPK-IVVELQS-ETKEEMESNISRILN 165 (176)
T ss_pred HHHHHHHHHHHcCCc-ceeecCc-CCHHHHHHHHHHHHH
Confidence 222223344566543 6777775 444777666655443
No 63
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=99.48 E-value=1.9e-12 Score=110.92 Aligned_cols=168 Identities=9% Similarity=0.061 Sum_probs=108.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHC--------CC-CCCHHH------
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNE--------GK-LVPEDV------ 126 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~--------g~-~~~~~~------ 126 (273)
.++.|.|+|++||||||+++.|++ +|++.+++|.+.++...+++.....+...+.. |. .+....
T Consensus 4 ~~~~igitG~igsGKSt~~~~l~~-~g~~v~d~D~i~~~~~~~~~~~~~~~~~~fg~~i~~~~~~~~~~idr~~l~~~vf 82 (208)
T PRK14731 4 LPFLVGVTGGIGSGKSTVCRFLAE-MGCELFEADRVAKELQVTDPEVIEGIKKLFGKDVYSKDASGKLLLDRKRIAQVVF 82 (208)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-CCCeEEeccHHHHHHcCCcHHHHHHHHHHhCHHHhCCCCCCCcccCHHHHHHHHh
Confidence 457899999999999999999997 89999999999988777666555555544311 22 122111
Q ss_pred ------------HHHHHH----HHHHhcccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcC
Q 024067 127 ------------IFALLS----KRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAF 190 (273)
Q Consensus 127 ------------~~~ll~----~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~ 190 (273)
+...+. ..+.... .....+|+-+.|.-.+. . + ...+|.+|++.||++++.+|+..|..
T Consensus 83 ~~~~~~~~l~~i~hp~i~~~~~~~i~~~~-~~~~~vvv~e~pLL~e~-~-~--~~~~d~ii~V~a~~e~~~~Rl~~R~~- 156 (208)
T PRK14731 83 SDPEKLGALNRLIHPKVFAAFQRAVDRAA-RRGKRILVKEAAILFES-G-G--DAGLDFIVVVAADTELRLERAVQRGM- 156 (208)
T ss_pred CCHHHHHHHHHHHCHHHHHHHHHHHHHHH-hcCCCEEEEEeeeeeec-C-c--hhcCCeEEEEECCHHHHHHHHHHcCC-
Confidence 111122 2222110 11224555444432221 0 0 13579999999999999999999863
Q ss_pred CCcccccccCCCCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHh
Q 024067 191 SPHKEFLRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHL 259 (273)
Q Consensus 191 ~~~~~~y~~~~~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~ 259 (273)
.+.+.+.+|+..+......+ ... -+.|++++++++++++|.+.+..
T Consensus 157 -----------------~s~e~~~~Ri~~q~~~~~~~----~~a--d~vI~N~g~~e~l~~~i~~~~~~ 202 (208)
T PRK14731 157 -----------------GSREEIRRRIAAQWPQEKLI----ERA--DYVIYNNGTLDELKAQTEQLYQV 202 (208)
T ss_pred -----------------CCHHHHHHHHHHcCChHHHH----HhC--CEEEECCCCHHHHHHHHHHHHHH
Confidence 24567888887655443333 122 25678889999999999988764
No 64
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=99.46 E-value=1.4e-12 Score=109.43 Aligned_cols=159 Identities=13% Similarity=0.052 Sum_probs=95.2
Q ss_pred EEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHH------------HHHHHHH
Q 024067 68 LIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIF------------ALLSKRL 135 (273)
Q Consensus 68 i~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~------------~ll~~~l 135 (273)
|.|+.||||||+++.|++.+.-..+. .+....+..+++|+.+++++......+..... ..+...+
T Consensus 1 ~EGiDGsGKtT~~~~L~~~l~~~~~~---~~~~~~~~~~~~g~~ir~~l~~~~~~~~~~~~~l~~a~r~~~~~~~I~~~l 77 (186)
T PF02223_consen 1 FEGIDGSGKTTQIRLLAEALKEKGYK---VIITFPPGSTPIGELIRELLRSESELSPEAEALLFAADRAWHLARVIRPAL 77 (186)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHTTEE---EEEEESSTSSHHHHHHHHHHHTSSTCGHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCc---ccccCCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999998544332 11122346678999999999844444432221 1222222
Q ss_pred HhcccCCcceEEEeCCCCC------------HHHHHHHH-hhC--CCceEEEEccCHHHHHHHHhcCCcCCCcccccccC
Q 024067 136 EEGYYRGESGFILDGIPRT------------RIQAEILD-QIV--DVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLG 200 (273)
Q Consensus 136 ~~~~~~~~~g~IlDg~P~~------------~~qa~~l~-~~~--~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~ 200 (273)
. .+..+|.|.|..+ ......+. .+. .||++|+|++++++..+|+..|....
T Consensus 78 ~-----~g~~VI~DRy~~S~lay~~~~~~~~~~~~~~~~~~~~~~~PDl~~~Ldv~pe~~~~R~~~r~~~~--------- 143 (186)
T PF02223_consen 78 K-----RGKIVICDRYIYSTLAYQGAKGELDIDWIWRLNKDIFLPKPDLTFFLDVDPEEALKRIAKRGEKD--------- 143 (186)
T ss_dssp H-----TTSEEEEESEHHHHHHHHTTTTSSTHHHHHHHHHHHHTTE-SEEEEEECCHHHHHHHHHHTSSTT---------
T ss_pred c-----CCCEEEEechhHHHHHhCccccCCcchhhhHHHHHhcCCCCCEEEEEecCHHHHHHHHHcCCccc---------
Confidence 2 2467888854211 22222222 233 89999999999999999999987510
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHH
Q 024067 201 GARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGL 253 (273)
Q Consensus 201 ~~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I 253 (273)
...... .+.++.+++....+ ++..+.++.||++.++++|.++|
T Consensus 144 ----~~~~~~---~~~~~~~~~~y~~l---~~~~~~~~iid~~~~~e~v~~~I 186 (186)
T PF02223_consen 144 ----DEEEED---LEYLRRVREAYLEL---AKDPNNWVIIDASRSIEEVHEQI 186 (186)
T ss_dssp ----TTTTHH---HHHHHHHHHHHHHH---HHTTTTEEEEETTS-HHHHHHHH
T ss_pred ----hHHHHH---HHHHHHHHHHHHHH---HcCCCCEEEEECCCCHHHHHhhC
Confidence 001111 11222222222222 22345799999999999999886
No 65
>PRK13976 thymidylate kinase; Provisional
Probab=99.46 E-value=4.3e-12 Score=108.76 Aligned_cols=169 Identities=9% Similarity=-0.024 Sum_probs=101.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCC--eechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHH------------HH
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLLEVP--HISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVI------------FA 129 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~--~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~------------~~ 129 (273)
+.|+|.|..||||||+++.|++.+.-. ...+ +....+.++.+|+.|++++........... ..
T Consensus 1 ~fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v---~~~~eP~~~~~g~~ir~~l~~~~~~~~~~~~llf~a~R~~~~~~ 77 (209)
T PRK13976 1 MFITFEGIDGSGKTTQSRLLAEYLSDIYGENNV---VLTREPGGTSFNELVRGLLLSLKNLDKISELLLFIAMRREHFVK 77 (209)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhcCCcce---EEeeCCCCCHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999988432 0111 111234567899999998864222222211 12
Q ss_pred HHHHHHHhcccCCcceEEEeCCCCCH------------HHHHHHHhh---CCCceEEEEccCHHHHHHHHhcCCcCCCcc
Q 024067 130 LLSKRLEEGYYRGESGFILDGIPRTR------------IQAEILDQI---VDVDLVINFKSIEDQLVKRNLESEAFSPHK 194 (273)
Q Consensus 130 ll~~~l~~~~~~~~~g~IlDg~P~~~------------~qa~~l~~~---~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~ 194 (273)
.+...+.. +..+|.|.|..+. .....+... ..||++|+|++|+++.++|+..++..
T Consensus 78 ~I~p~l~~-----G~~VI~DRy~~S~~Ayq~~~~g~~~~~i~~l~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~~~~e---- 148 (209)
T PRK13976 78 VILPALLQ-----GKIVICDRFIDSTIAYQGYGCGVDLSLIRDLNDLVVDKYPDITFVLDIDIELSLSRADKNGYE---- 148 (209)
T ss_pred HHHHHHHC-----CCEEEECCCcCHHHHhccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHhcccchh----
Confidence 22233332 4567888765431 112223222 26999999999999999999644321
Q ss_pred cccccCCCCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeC---CCC---hhHHHHHHHHHHHhcCC
Q 024067 195 EFLRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQV---AAA---PGETWQGLLSALHLQHM 262 (273)
Q Consensus 195 ~~y~~~~~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~---~~s---~~ev~~~I~~~l~~~~~ 262 (273)
..+.+.+++-.+.|.+..+ . ..+.++.+|+ +++ +++|.++|.+.+.....
T Consensus 149 ------------~~~~~~l~~v~~~Y~~l~~----~--~~~~~~~id~~~~~~~~~~~e~v~~~i~~~i~~~~~ 204 (209)
T PRK13976 149 ------------FMDLEFYDKVRKGFREIVI----K--NPHRCHVITCIDAKDNIEDINSVHLEIVKLLHAVTK 204 (209)
T ss_pred ------------cccHHHHHHHHHHHHHHHH----h--CCCCeEEEECCCCccCcCCHHHHHHHHHHHHHHHHH
Confidence 1122333333344543321 1 1235777887 345 99999999998876653
No 66
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=99.46 E-value=4.1e-12 Score=108.00 Aligned_cols=166 Identities=16% Similarity=0.153 Sum_probs=107.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCH------------------
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPE------------------ 124 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~------------------ 124 (273)
++.|.|+|.|||||||+++.+++ +|++.|++|+++++.+.++++....+.+.+.....-++
T Consensus 2 ~~iIglTG~igsGKStva~~~~~-~G~~vidaD~v~r~~~~~~~~~~~~i~~~fG~~i~~~dg~~~r~~L~~~vf~~~~~ 80 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDVAREVVEPGGEALQEIAERFGLEILDEDGGLDRRKLREKVFNDPEA 80 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH-cCCeEEEccHHHHHHHhccchHHHHHHHHcCCcccCCCchhHHHHHHHHHcCCHHH
Confidence 57889999999999999999999 99999999999999988888877777766543221111
Q ss_pred -----HHHHHHHHHHHH-hcccCCcceEEEeCCCCCHHHHHHHHhh-C--CCceEEEEccCHHHHHHHHhcCCcCCCccc
Q 024067 125 -----DVIFALLSKRLE-EGYYRGESGFILDGIPRTRIQAEILDQI-V--DVDLVINFKSIEDQLVKRNLESEAFSPHKE 195 (273)
Q Consensus 125 -----~~~~~ll~~~l~-~~~~~~~~g~IlDg~P~~~~qa~~l~~~-~--~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~ 195 (273)
.++..++...+. ..+. ...++++-..| .|.+. . .+|.||.++||+++.++|++.|..
T Consensus 81 ~~~Le~i~hPli~~~~~~~~~~-~~~~~~~~eip-------lL~e~~~~~~~d~Vi~V~a~~e~r~eRl~~R~~------ 146 (201)
T COG0237 81 RLKLEKILHPLIRAEIKVVIDG-ARSPYVVLEIP-------LLFEAGGEKYFDKVIVVYAPPEIRLERLMKRDG------ 146 (201)
T ss_pred HHHHHHhhhHHHHHHHHHHHHH-hhCCceEEEch-------HHHhccccccCCEEEEEECCHHHHHHHHHhcCC------
Confidence 111122222221 0000 01224333333 23222 1 278999999999999999999972
Q ss_pred ccccCCCCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhcC
Q 024067 196 FLRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQH 261 (273)
Q Consensus 196 ~y~~~~~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~~ 261 (273)
.+.+.+..++..-. +..+-+...+ +.++++++++.+.++|...+....
T Consensus 147 ------------~~~e~~~~~~~~Q~----~~~ek~~~ad--~vi~n~~~i~~l~~~i~~~~~~~~ 194 (201)
T COG0237 147 ------------LDEEDAEARLASQR----DLEEKLALAD--VVIDNDGSIENLLEQIEKLLKELL 194 (201)
T ss_pred ------------CCHHHHHHHHHhcC----CHHHHHhhcC--ChhhcCCCHHHHHHHHHHHHHHHH
Confidence 23445555543322 2222233333 456888999999999988887654
No 67
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=99.45 E-value=5.5e-12 Score=110.31 Aligned_cols=169 Identities=12% Similarity=0.057 Sum_probs=106.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCC-----CCCCHH------------
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEG-----KLVPED------------ 125 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g-----~~~~~~------------ 125 (273)
+++|.|+|++||||||+++.|.+++|++.||+|.+.++...++++..+.+.+.+... +.+...
T Consensus 1 M~iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~iar~l~~~~~~~~~~i~~~Fg~~i~~~dg~idR~~L~~~VF~d~~~ 80 (244)
T PTZ00451 1 MILIGLTGGIACGKSTVSRILREEHHIEVIDADLVVRELQAPNMACTRKIAARWPLCVHPETGELNRAELGKIIFSDAQA 80 (244)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCeEEehHHHHHHHHcCChHHHHHHHHHhchhhcCCCCcCCHHHHHHHHhCCHHH
Confidence 357899999999999999999999999999999999998888887777776655221 122221
Q ss_pred ------HHHHHHHHH----HHh-------cccC--CcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhc
Q 024067 126 ------VIFALLSKR----LEE-------GYYR--GESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLE 186 (273)
Q Consensus 126 ------~~~~ll~~~----l~~-------~~~~--~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~ 186 (273)
++...+... +.. .+.. +..-+|+|. |.-.+ .... ...+|.+|++.||.++..+|+..
T Consensus 81 ~~~Le~i~HP~V~~~i~~~i~~~~~~~~~~~~~~~~~~~vv~ev-PLL~E-~~~~--~~~~D~iv~V~a~~e~ri~RL~~ 156 (244)
T PTZ00451 81 RRALGRIMNPPIFRAILKRIAAAWWEDLWRSGAGSSPLIVVLDA-PTLFE-TKTF--TYFVSASVVVSCSEERQIERLRK 156 (244)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHhhhhhhhhhhhccCCCEEEEEe-chhhc-cCch--hhcCCeEEEEECCHHHHHHHHHH
Confidence 111122111 110 0000 122456663 32111 0000 12469999999999999999998
Q ss_pred CCcCCCcccccccCCCCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCC--CChhHHHHHHHHHHHh
Q 024067 187 SEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVA--AAPGETWQGLLSALHL 259 (273)
Q Consensus 187 R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~--~s~~ev~~~I~~~l~~ 259 (273)
|+. -+.+.+++|+.. +. +..+ ..+... +.|+++ ++++++.++|.+.+..
T Consensus 157 R~g------------------~s~eea~~Ri~~---Q~-~~~e-k~~~aD-~VI~N~~~g~~~~L~~~v~~~~~~ 207 (244)
T PTZ00451 157 RNG------------------FSKEEALQRIGS---QM-PLEE-KRRLAD-YIIENDSADDLDELRGSVCDCVAW 207 (244)
T ss_pred cCC------------------CCHHHHHHHHHh---CC-CHHH-HHHhCC-EEEECCCCCCHHHHHHHHHHHHHH
Confidence 852 134567777754 11 2222 222222 446667 8999999999988754
No 68
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=99.45 E-value=1.4e-12 Score=110.72 Aligned_cols=173 Identities=10% Similarity=0.052 Sum_probs=98.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHH-HHHHHHHHCCCCCCHH----H----------
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALY-KQIANAVNEGKLVPED----V---------- 126 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g-~~i~~~l~~g~~~~~~----~---------- 126 (273)
.++.|+|.|+|||||||+|+.|++++|+.++..+|++|+.+.+....+ .......+.|+.++++ +
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~~r~~~r~~~~~~p~l~~s~~~a~~~~~~~~~~~~~~~y~~q~~~ 81 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLREFLRPYVDDEPVLAKSVYDAWEFYGSMTDENIVKGYLDQARA 81 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHHHHHHHHHhcCCCCCcccccHHHHHHcCCcchhHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999998776322211 0111111122222221 1
Q ss_pred ----HHHHHHHHHHhcccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEcc-CHHHHHHHHhcCCcCCCcccccccCC
Q 024067 127 ----IFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKS-IEDQLVKRNLESEAFSPHKEFLRLGG 201 (273)
Q Consensus 127 ----~~~ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~-~~e~l~~Rl~~R~~~~~~~~~y~~~~ 201 (273)
+..++...+. .+..+|+|+......+.+.... .. ..++++.+ +++++.+|+..|..+.
T Consensus 82 v~~~L~~va~~~l~-----~G~sVIvEgv~l~p~~~~~~~~-~~-v~~i~l~v~d~e~lr~Rl~~R~~~~---------- 144 (197)
T PRK12339 82 IMPGINRVIRRALL-----NGEDLVIESLYFHPPMIDENRT-NN-IRAFYLYIRDAELHRSRLADRINYT---------- 144 (197)
T ss_pred HHHHHHHHHHHHHH-----cCCCEEEEecCcCHHHHHHHHh-cC-eEEEEEEeCCHHHHHHHHHHHhhcc----------
Confidence 1122222222 3577999997666555433221 22 24566655 6788889999887532
Q ss_pred CCCCCCCc-HHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHH
Q 024067 202 ARFSAADA-ASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSAL 257 (273)
Q Consensus 202 ~~~~~~d~-~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l 257 (273)
.+++ .+.+.+.+..++...+-+.+--++.+ +-.|+ +.+.++.++.+...+
T Consensus 145 ----~~~~p~~~~~~~~~~ir~i~~~l~~~a~~~~-i~~i~-~~~~~~~~~~~~~~~ 195 (197)
T PRK12339 145 ----HKNSPGKRLAEHLPEYRTIMDYSIADARGYN-IKVID-TDNYREARNPLLDPI 195 (197)
T ss_pred ----cCCCcHHHHHHHHHHHHHHHHHHHHHHHHcC-CCeec-CccHHHHHHHHHHHh
Confidence 1111 22333333333333232333223333 44456 577888888776643
No 69
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=99.45 E-value=3.8e-12 Score=103.06 Aligned_cols=112 Identities=20% Similarity=0.234 Sum_probs=67.2
Q ss_pred EEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCCcce
Q 024067 66 WVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGESG 145 (273)
Q Consensus 66 Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~~~g 145 (273)
|+|+|+|||||||+++.|++.+|+++++.++++...... ...+.+.. .| .+.....-.+.+... ....+
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~~~~~d~~~~~~~~~--~~~~~~~~---~~----~~~~~~~e~~~~~~~--~~~~~ 70 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQRAGM--SIPEIFAE---EG----EEGFRELEREVLLLL--LTKEN 70 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHcCC--CHHHHHHH---HC----HHHHHHHHHHHHHHH--hccCC
Confidence 789999999999999999999999999999888765432 22221111 12 122222211112111 11235
Q ss_pred EEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCC
Q 024067 146 FILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESE 188 (273)
Q Consensus 146 ~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (273)
+||++-..................+|+|++|.+++.+|+..|.
T Consensus 71 ~vi~~g~~~i~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~r~ 113 (154)
T cd00464 71 AVIATGGGAVLREENRRLLLENGIVVWLDASPEELLERLARDK 113 (154)
T ss_pred cEEECCCCccCcHHHHHHHHcCCeEEEEeCCHHHHHHHhccCC
Confidence 5665322111111112222345689999999999999998875
No 70
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=99.44 E-value=4.6e-12 Score=106.55 Aligned_cols=163 Identities=13% Similarity=0.092 Sum_probs=97.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCC-----ChHHHHHHHHHHCCCCCCHHHH-------HHH
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPR-----SALYKQIANAVNEGKLVPEDVI-------FAL 130 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~-----~~~g~~i~~~l~~g~~~~~~~~-------~~l 130 (273)
+..++|+||+||||||+++.|+..++..++..+..+....... .-.++.....++++........ ..-
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg~~~~ 81 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASAGSENHIALSEQEFFTRAGQNLFALSWHANGLYYGVGIE 81 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccchhHHhheeEcHHHHHHHHHCCchhhHHHHhCCccCCcHH
Confidence 4578999999999999999999988766555544433211110 0122333334444432211100 011
Q ss_pred HHHHHHhcccCCcceEEEeCCCCCHHHHHHH-HhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCc
Q 024067 131 LSKRLEEGYYRGESGFILDGIPRTRIQAEIL-DQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADA 209 (273)
Q Consensus 131 l~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l-~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~ 209 (273)
+...+.. +..+|+||.- .....+ .....+..+|+|++|.+++.+|+..|.. .+
T Consensus 82 ~~~~l~~-----g~~VI~~G~~---~~~~~~~~~~~~~~~vi~l~~s~e~l~~RL~~R~~------------------~~ 135 (186)
T PRK10078 82 IDLWLHA-----GFDVLVNGSR---AHLPQARARYQSALLPVCLQVSPEILRQRLENRGR------------------EN 135 (186)
T ss_pred HHHHHhC-----CCEEEEeChH---HHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHHhCC------------------CC
Confidence 3334433 3568888761 111122 2234556789999999999999987742 12
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhc
Q 024067 210 ASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQ 260 (273)
Q Consensus 210 ~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~ 260 (273)
++.+++|+..+. +|.. ...+.+|.+++++++.++|...|..-
T Consensus 136 ~~~i~~rl~r~~--------~~~~-ad~~vi~~~~s~ee~~~~i~~~l~~~ 177 (186)
T PRK10078 136 ASEINARLARAA--------RYQP-QDCHTLNNDGSLRQSVDTLLTLLHLS 177 (186)
T ss_pred HHHHHHHHHHhh--------hhcc-CCEEEEeCCCCHHHHHHHHHHHHhhc
Confidence 445777775321 3333 23567787889999999999988643
No 71
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=99.43 E-value=3e-12 Score=107.81 Aligned_cols=159 Identities=16% Similarity=0.196 Sum_probs=101.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHH------CCCCCCHHH------------
Q 024067 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN------EGKLVPEDV------------ 126 (273)
Q Consensus 65 ~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~------~g~~~~~~~------------ 126 (273)
+|+|+|++||||||+++.|++..|+++|++|++.++.+.++++....+.+.+. +|. +....
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~-idr~~L~~~vf~~~~~~ 79 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGE-LDRKALGERVFNDPEEL 79 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCC-CCHHHHHHHHhCCHHHH
Confidence 47899999999999999999998899999999999988888777776665543 232 22111
Q ss_pred ------H----HHHHHHHHHhcccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccc
Q 024067 127 ------I----FALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEF 196 (273)
Q Consensus 127 ------~----~~ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~ 196 (273)
+ ...+.+.+... .....+|+-+.|.-... .+ ...+|.+|+++++.+++.+|+..|...
T Consensus 80 ~~le~ilhP~i~~~i~~~i~~~--~~~~~~vvi~~pll~e~--~~--~~~~D~vv~V~~~~~~~~~Rl~~R~~~------ 147 (188)
T TIGR00152 80 KWLNNLLHPLIREWMKKLLAQF--QSKLAYVLLDVPLLFEN--KL--RSLCDRVIVVDVSPQLQLERLMQRDNL------ 147 (188)
T ss_pred HHHHHhhCHHHHHHHHHHHHHh--hcCCCEEEEEchHhhhC--Cc--HHhCCEEEEEECCHHHHHHHHHHcCCC------
Confidence 1 11122222221 11112444444433221 01 125789999999999999999998621
Q ss_pred cccCCCCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHH
Q 024067 197 LRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLL 254 (273)
Q Consensus 197 y~~~~~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~ 254 (273)
+.+.+.+|+.... +..+.-...+ +.|+++++++++..++.
T Consensus 148 ------------s~~~~~~r~~~q~----~~~~~~~~ad--~vI~N~~~~e~l~~~~~ 187 (188)
T TIGR00152 148 ------------TEEEVQKRLASQM----DIEERLARAD--DVIDNSATLADLVKQLE 187 (188)
T ss_pred ------------CHHHHHHHHHhcC----CHHHHHHhCC--EEEECCCCHHHHHHHHh
Confidence 2456677766542 2222111222 55677899999988874
No 72
>PRK07933 thymidylate kinase; Validated
Probab=99.43 E-value=4.3e-12 Score=109.15 Aligned_cols=172 Identities=18% Similarity=0.097 Sum_probs=96.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCC---CeechhHHHHHHccCCChHHHHHHHHHHCC--CCC--CHHHHH--------
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLLEV---PHISMGSLVRQELSPRSALYKQIANAVNEG--KLV--PEDVIF-------- 128 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~g~---~~is~~dllr~~~~~~~~~g~~i~~~l~~g--~~~--~~~~~~-------- 128 (273)
+.|+|.|+.||||||+++.|++.+.- .++-+ ++-..++++.++.+++.+... ... +.....
T Consensus 1 ~~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~----~~P~~~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~a~R~~ 76 (213)
T PRK07933 1 MLIAIEGVDGAGKRTLTEALRAALEARGRSVATL----AFPRYGRSVHADLAAEALHGRHGDLADSVYAMATLFALDRAG 76 (213)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE----ecCCCCCCCccHHHHHHHcCCCCcccCCHHHHHHHHhhhhhh
Confidence 47999999999999999999999843 22211 110013455677777776532 111 111100
Q ss_pred --HHHHHHHHhcccCCcceEEEeCCCCCH--HHH---------------HHHHhh----CCCceEEEEccCHHHHHHHHh
Q 024067 129 --ALLSKRLEEGYYRGESGFILDGIPRTR--IQA---------------EILDQI----VDVDLVINFKSIEDQLVKRNL 185 (273)
Q Consensus 129 --~ll~~~l~~~~~~~~~g~IlDg~P~~~--~qa---------------~~l~~~----~~~d~vI~L~~~~e~l~~Rl~ 185 (273)
..+...+. .+..+|.|.|..+. .|. ..++.. ..||++|+|++++++.++|+.
T Consensus 77 ~~~~I~p~l~-----~g~~VI~DRy~~S~~Ayq~~~~~~~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ldv~~e~a~~Ri~ 151 (213)
T PRK07933 77 ARDELAGLLA-----AHDVVILDRYVASNAAYSAARLHQDADGEAVAWVAELEFGRLGLPVPDLQVLLDVPVELAAERAR 151 (213)
T ss_pred hHHHHHHHHh-----CCCEEEECCccchhHHHhccCCCcccchHHHHHHHHHHHhhcCCCCCCEEEEecCCHHHHHHHHH
Confidence 11222222 24567888775442 221 112211 269999999999999999998
Q ss_pred cCCcCCCcccccccCCCCCCCCCcHHHHHHHH-HHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHH
Q 024067 186 ESEAFSPHKEFLRLGGARFSAADAASAWKEKF-RIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSAL 257 (273)
Q Consensus 186 ~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl-~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l 257 (273)
+|.... .+.. ..+-+... .+.+++ +.|.+..+ .+ ....++.||++.++++|.++|...|
T Consensus 152 ~R~~~~-~~~~------~d~~E~~~-~f~~~v~~~Y~~~~~----~~-~~~~~~~ida~~~~e~v~~~i~~~~ 211 (213)
T PRK07933 152 RRAAQD-ADRA------RDAYERDD-GLQQRTGAVYAELAA----QG-WGGPWLVVDPDVDPAALAARLAAAL 211 (213)
T ss_pred hhcccc-CCcc------cccccccH-HHHHHHHHHHHHHHH----hc-CCCCeEEeCCCCCHHHHHHHHHHHh
Confidence 885310 0000 00001111 222232 33433221 11 1236889999999999999998875
No 73
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=99.43 E-value=9.4e-13 Score=105.31 Aligned_cols=114 Identities=20% Similarity=0.228 Sum_probs=74.6
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChH---HHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccC
Q 024067 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSAL---YKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (273)
Q Consensus 65 ~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~---g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~ 141 (273)
.|+++|+|||||||+++.|++.++..+|+.|++.........+. .....+. -.+.+...+...+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~---- 69 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDEIRRRLAGEDPPSPSDYIEAEER-------AYQILNAAIRKALRN---- 69 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHHHHHHHCCSSSGCCCCCHHHHHH-------HHHHHHHHHHHHHHT----
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHHHHHHHcccccccchhHHHHHHH-------HHHHHHHHHHHHHHc----
Confidence 47899999999999999999999999999988766443211110 0000000 011233444444543
Q ss_pred CcceEEEeCCCCCHHHHHHHHhh----CCCceEEEEccCHHHHHHHHhcCCcC
Q 024067 142 GESGFILDGIPRTRIQAEILDQI----VDVDLVINFKSIEDQLVKRNLESEAF 190 (273)
Q Consensus 142 ~~~g~IlDg~P~~~~qa~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R~~~ 190 (273)
+..+|+|.......+...+... ..+..+|+|+++++++.+|+..|...
T Consensus 70 -g~~~vvd~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~~~ 121 (143)
T PF13671_consen 70 -GNSVVVDNTNLSREERARLRELARKHGYPVRVVYLDAPEETLRERLAQRNRE 121 (143)
T ss_dssp -T-EEEEESS--SHHHHHHHHHHHHHCTEEEEEEEECHHHHHHHHHHHTTHCC
T ss_pred -CCCceeccCcCCHHHHHHHHHHHHHcCCeEEEEEEECCHHHHHHHHHhcCCc
Confidence 4669999776666665555433 33568999999999999999998753
No 74
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=99.43 E-value=7e-12 Score=106.88 Aligned_cols=170 Identities=12% Similarity=0.097 Sum_probs=105.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHH-----CCCCCCH------------
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN-----EGKLVPE------------ 124 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~-----~g~~~~~------------ 124 (273)
.|..|.|+|++||||||+++.|++++|++++++|.+.++.+.+ ++..+.+.+.+. +|. +..
T Consensus 5 ~~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~-~~~~~~i~~~fG~~i~~~g~-idR~~L~~~vF~d~~ 82 (204)
T PRK14733 5 NTYPIGITGGIASGKSTATRILKEKLNLNVVCADTISREITKK-PSVIKKIAEKFGDEIVMNKQ-INRAMLRAIITESKE 82 (204)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCc-hHHHHHHHHHhCHHhccCCC-cCHHHHHHHHhCCHH
Confidence 4678999999999999999999999999999999999887665 445555554432 222 221
Q ss_pred ------HHHHHHHHHHHHhccc-CCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCccccc
Q 024067 125 ------DVIFALLSKRLEEGYY-RGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFL 197 (273)
Q Consensus 125 ------~~~~~ll~~~l~~~~~-~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y 197 (273)
+++...+.+.+..... ....-+|+|. |.-.+.. +.....+|.+|++.||+++.++|+..|...
T Consensus 83 ~~~~Le~i~HP~V~~~~~~~~~~~~~~~vv~ei-pLL~E~~--~~~~~~~D~vi~V~a~~e~ri~Rl~~Rd~~------- 152 (204)
T PRK14733 83 AKKWLEDYLHPVINKEIKKQVKESDTVMTIVDI-PLLGPYN--FRHYDYLKKVIVIKADLETRIRRLMERDGK------- 152 (204)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhcCCCeEEEEe-chhhhcc--CchhhhCCEEEEEECCHHHHHHHHHHcCCC-------
Confidence 1222222222221100 1123355653 3221110 000124789999999999999999988632
Q ss_pred ccCCCCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCC-ChhHHHHHHHHHHHhc
Q 024067 198 RLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAA-APGETWQGLLSALHLQ 260 (273)
Q Consensus 198 ~~~~~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~-s~~ev~~~I~~~l~~~ 260 (273)
+.+.+.+|+..- .+..+.-...+ +.|+.++ +.+++.++|...++.-
T Consensus 153 -----------s~~~a~~ri~~Q----~~~eek~~~aD--~VI~N~g~~~~~l~~~~~~~~~~~ 199 (204)
T PRK14733 153 -----------NRQQAVAFINLQ----ISDKEREKIAD--FVIDNTELTDQELESKLITTINEI 199 (204)
T ss_pred -----------CHHHHHHHHHhC----CCHHHHHHhCC--EEEECcCCCHHHHHHHHHHHHHHH
Confidence 244556665432 12233233333 5577788 9999999999888764
No 75
>PRK14738 gmk guanylate kinase; Provisional
Probab=99.41 E-value=1.6e-12 Score=111.27 Aligned_cols=172 Identities=11% Similarity=0.116 Sum_probs=102.5
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHh-CCCeechhHHHHHHcc-----CCChH----HHHHHHHHHCCCCCCHH----
Q 024067 60 PRRGVQWVLIGDPGVKKHVYADNLSKLL-EVPHISMGSLVRQELS-----PRSAL----YKQIANAVNEGKLVPED---- 125 (273)
Q Consensus 60 ~~~~~~Ivi~G~pGSGKsT~a~~La~~~-g~~~is~~dllr~~~~-----~~~~~----g~~i~~~l~~g~~~~~~---- 125 (273)
|.++..|+|+||+||||||+++.|.+.. .+.+. . ......+ .+..+ -+.+...+.+|..+...
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~~~~~~~~-~--~~ttr~~r~~e~~g~~y~fv~~~~f~~~~~~~~~le~~~~~g 86 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRERKLPFHFV-V--TATTRPKRPGEIDGVDYHFVTPEEFREMISQNELLEWAEVYG 86 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhcCCccccc-c--cccCCCCCCCCCCCCeeeeCCHHHHHHHHHcCCcEEEEEEcC
Confidence 4578899999999999999999998653 12111 0 0111110 01011 12344455555443321
Q ss_pred ----HHHHHHHHHHHhcccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEcc--CHHHHHHHHhcCCcCCCccccccc
Q 024067 126 ----VIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKS--IEDQLVKRNLESEAFSPHKEFLRL 199 (273)
Q Consensus 126 ----~~~~ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~--~~e~l~~Rl~~R~~~~~~~~~y~~ 199 (273)
+-...+...+.. +..+|+|.-+. .+..+.. ..||.++++.+ +.+++.+|+..|..
T Consensus 87 ~~YGt~~~~i~~~~~~-----g~~vi~~~~~~---g~~~l~~-~~pd~~~if~~pps~e~l~~Rl~~R~~---------- 147 (206)
T PRK14738 87 NYYGVPKAPVRQALAS-----GRDVIVKVDVQ---GAASIKR-LVPEAVFIFLAPPSMDELTRRLELRRT---------- 147 (206)
T ss_pred ceecCCHHHHHHHHHc-----CCcEEEEcCHH---HHHHHHH-hCCCeEEEEEeCCCHHHHHHHHHHcCC----------
Confidence 111234444443 35678886542 3333433 34777666665 46788999998862
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhcCCCCCC
Q 024067 200 GGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQHMNAVS 266 (273)
Q Consensus 200 ~~~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~~~~~~~ 266 (273)
++.+.+.+|+..+....... ....++.+|++.++++++++|...|.....+..+
T Consensus 148 --------~~~~~~~~Rl~~~~~e~~~~-----~~~~~~iId~~~~~e~v~~~i~~~l~~~~~~~~~ 201 (206)
T PRK14738 148 --------ESPEELERRLATAPLELEQL-----PEFDYVVVNPEDRLDEAVAQIMAIISAEKSRVHP 201 (206)
T ss_pred --------CCHHHHHHHHHHHHHHHhcc-----cCCCEEEECCCCCHHHHHHHHHHHHHHHhcccCc
Confidence 23567888888765433211 1124788999999999999999999887554433
No 76
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.40 E-value=5.3e-12 Score=100.55 Aligned_cols=157 Identities=15% Similarity=0.137 Sum_probs=109.5
Q ss_pred EcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHH---HHHHHhcccCCcce
Q 024067 69 IGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALL---SKRLEEGYYRGESG 145 (273)
Q Consensus 69 ~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll---~~~l~~~~~~~~~g 145 (273)
+|..||||||+++.||+++|+.+|+-|++.-.+. |. -+..|.++.|+--...| ..++.+.. .++..
T Consensus 1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp~aN---------i~-KM~~GiPL~DdDR~pWL~~l~~~~~~~~-~~~~~ 69 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHPPAN---------IE-KMSAGIPLNDDDRWPWLEALGDAAASLA-QKNKH 69 (161)
T ss_pred CCCCccCHHHHHHHHHHHcCCceecccccCCHHH---------HH-HHhCCCCCCcchhhHHHHHHHHHHHHhh-cCCCc
Confidence 5999999999999999999999999998775421 21 26789888886544433 34443321 23344
Q ss_pred EEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHHHHHHhhH
Q 024067 146 FILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAEQGK 225 (273)
Q Consensus 146 ~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~y~~~~~ 225 (273)
.||-+........+.|....+--.+|||+.+.+++.+|+..|..+. +| .+.++.+|...+.
T Consensus 70 ~vi~CSALKr~YRD~LR~~~~~~~Fv~L~g~~~~i~~Rm~~R~gHF----------M~------~~ll~SQfa~LE~--- 130 (161)
T COG3265 70 VVIACSALKRSYRDLLREANPGLRFVYLDGDFDLILERMKARKGHF----------MP------ASLLDSQFATLEE--- 130 (161)
T ss_pred eEEecHHHHHHHHHHHhccCCCeEEEEecCCHHHHHHHHHhcccCC----------CC------HHHHHHHHHHhcC---
Confidence 6666666666667777543322469999999999999999998654 22 3455655554332
Q ss_pred HHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhc
Q 024067 226 SLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQ 260 (273)
Q Consensus 226 ~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~ 260 (273)
|-. ...++.||.+.+++++.+++...|...
T Consensus 131 P~~-----de~vi~idi~~~~e~vv~~~~~~l~~~ 160 (161)
T COG3265 131 PGA-----DEDVLTIDIDQPPEEVVAQALAWLKEG 160 (161)
T ss_pred CCC-----CCCEEEeeCCCCHHHHHHHHHHHHhcc
Confidence 111 124899999999999999999988753
No 77
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=99.40 E-value=1.6e-12 Score=109.18 Aligned_cols=165 Identities=13% Similarity=0.101 Sum_probs=105.6
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh--CC--CeechhHHHHHHccCCChH----HHHHHHHHHCCCCCCHHHH-------
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLL--EV--PHISMGSLVRQELSPRSAL----YKQIANAVNEGKLVPEDVI------- 127 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~--g~--~~is~~dllr~~~~~~~~~----g~~i~~~l~~g~~~~~~~~------- 127 (273)
++.|+|+||+||||+|+++.|.+.+ ++ .+..+..-.+.....+..+ .+++...+..|..++....
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~YGt 81 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYYGT 81 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcCccc
Confidence 4678999999999999999999986 23 2222211111111112222 2677778888877654322
Q ss_pred -HHHHHHHHHhcccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEc-cCHHHHHHHHhcCCcCCCcccccccCCCCCC
Q 024067 128 -FALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFK-SIEDQLVKRNLESEAFSPHKEFLRLGGARFS 205 (273)
Q Consensus 128 -~~ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~-~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~ 205 (273)
...+.+.+.. ++.+|+|+.|....|..... ..| .+|++. .+.+++.+|+..|.
T Consensus 82 ~~~~i~~~~~~-----~~~~ild~~~~~~~~l~~~~--~~~-~vIfi~~~s~~~l~~rl~~R~----------------- 136 (184)
T smart00072 82 SKETIRQVAEQ-----GKHCLLDIDPQGVKQLRKAQ--LYP-IVIFIAPPSSEELERRLRGRG----------------- 136 (184)
T ss_pred CHHHHHHHHHc-----CCeEEEEECHHHHHHHHHhC--CCc-EEEEEeCcCHHHHHHHHHhcC-----------------
Confidence 2355555554 47899999988887765432 222 788887 56677999998875
Q ss_pred CCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhc
Q 024067 206 AADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQ 260 (273)
Q Consensus 206 ~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~ 260 (273)
+++.+.+++|+........ .|...+ ..|.+ .+.++.+++|...|...
T Consensus 137 -~~~~~~i~~rl~~a~~~~~----~~~~fd--~~I~n-~~l~~~~~~l~~~i~~~ 183 (184)
T smart00072 137 -TETAERIQKRLAAAQKEAQ----EYHLFD--YVIVN-DDLEDAYEELKEILEAE 183 (184)
T ss_pred -CCCHHHHHHHHHHHHHHHh----hhccCC--EEEEC-cCHHHHHHHHHHHHHhc
Confidence 3456788999887544322 232222 34453 47999999999988653
No 78
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.39 E-value=2.3e-12 Score=103.27 Aligned_cols=162 Identities=16% Similarity=0.178 Sum_probs=113.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHH---HHHhccc
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSK---RLEEGYY 140 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~---~l~~~~~ 140 (273)
-.|+++|+.||||||+++.|++++++.+++.||+...+. .+-+.+|.++.|+--..++++ .+... .
T Consensus 13 ~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~~N----------veKM~~GipLnD~DR~pWL~~i~~~~~~~-l 81 (191)
T KOG3354|consen 13 YVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPPAN----------VEKMTQGIPLNDDDRWPWLKKIAVELRKA-L 81 (191)
T ss_pred eeEEEEecCCCChhhHHHHHHHHhCCcccccccCCCHHH----------HHHHhcCCCCCcccccHHHHHHHHHHHHH-h
Confidence 368899999999999999999999999999999875432 233678888877654444432 22111 1
Q ss_pred CCcceEEEeCCCCCHHHHHHHHhhC-------CC---ceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcH
Q 024067 141 RGESGFILDGIPRTRIQAEILDQIV-------DV---DLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAA 210 (273)
Q Consensus 141 ~~~~g~IlDg~P~~~~qa~~l~~~~-------~~---d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~ 210 (273)
..++++||-+........++|.+.. .| -.+|+|.++.|++.+|+..|..+. +| .
T Consensus 82 ~~~q~vVlACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl~~R~gHF----------Mp------~ 145 (191)
T KOG3354|consen 82 ASGQGVVLACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRLKKRKGHF----------MP------A 145 (191)
T ss_pred hcCCeEEEEhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHHHHHhhccccc----------CC------H
Confidence 2468999988777777777776521 12 368999999999999999998653 22 3
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCC-CChhHHHHHHHHHHHh
Q 024067 211 SAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVA-AAPGETWQGLLSALHL 259 (273)
Q Consensus 211 e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~-~s~~ev~~~I~~~l~~ 259 (273)
+.++.++...+. |-. ....++.|+.. .+++++...|...+..
T Consensus 146 ~lleSQf~~LE~---p~~----~e~div~isv~~~~~e~iv~tI~k~~~~ 188 (191)
T KOG3354|consen 146 DLLESQFATLEA---PDA----DEEDIVTISVKTYSVEEIVDTIVKMVAL 188 (191)
T ss_pred HHHHHHHHhccC---CCC----CccceEEEeeccCCHHHHHHHHHHHHHh
Confidence 455555544321 110 11247888887 7999999988877754
No 79
>PRK07261 topology modulation protein; Provisional
Probab=99.39 E-value=1.1e-12 Score=109.01 Aligned_cols=101 Identities=21% Similarity=0.229 Sum_probs=75.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCCc
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE 143 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~~ 143 (273)
++|+|+|+|||||||+|+.|++.+++++++.|.+.+.. + ....+.+.....+...+.+
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~---~-------------~~~~~~~~~~~~~~~~~~~------ 58 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQP---N-------------WQERDDDDMIADISNFLLK------ 58 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecc---c-------------cccCCHHHHHHHHHHHHhC------
Confidence 47999999999999999999999999999998765421 0 0112344455555555543
Q ss_pred ceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCc
Q 024067 144 SGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEA 189 (273)
Q Consensus 144 ~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (273)
..||+||......+...+. ..|.+|+|++|..+++.|+..|..
T Consensus 59 ~~wIidg~~~~~~~~~~l~---~ad~vI~Ld~p~~~~~~R~lkR~~ 101 (171)
T PRK07261 59 HDWIIDGNYSWCLYEERMQ---EADQIIFLNFSRFNCLYRAFKRYL 101 (171)
T ss_pred CCEEEcCcchhhhHHHHHH---HCCEEEEEcCCHHHHHHHHHHHHH
Confidence 3499999987655444444 568999999999999999988864
No 80
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=99.39 E-value=9.7e-13 Score=107.87 Aligned_cols=153 Identities=19% Similarity=0.246 Sum_probs=92.6
Q ss_pred CCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHhcccCCcceEEEe-
Q 024067 72 PGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN-EGKLVPEDVIFALLSKRLEEGYYRGESGFILD- 149 (273)
Q Consensus 72 pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~-~g~~~~~~~~~~ll~~~l~~~~~~~~~g~IlD- 149 (273)
|||||||+++.||+.+|++++++|+++.+. .|+.+.+++. .|.....+...+++.+.+.. .+.||.
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~~------~g~si~~i~~~~G~~~fr~~E~~~l~~l~~~------~~~VIa~ 68 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEER------TGMSISEIFAEEGEEAFRELESEALRELLKE------NNCVIAC 68 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEHHHHHHHH------HTSHHHHHHHHHHHHHHHHHHHHHHHHHHCS------SSEEEEE
T ss_pred CCCcHHHHHHHHHHHhCCCccccCHHHHHH------hCCcHHHHHHcCChHHHHHHHHHHHHHHhcc------CcEEEeC
Confidence 799999999999999999999999999764 3345555554 33322333444555443332 245444
Q ss_pred --CCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHHHHHHhhHHH
Q 024067 150 --GIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAEQGKSL 227 (273)
Q Consensus 150 --g~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~y~~~~~~l 227 (273)
|.+......+.|. ....+|+|+++.+++.+|+..+...| ...+... .......+. . .
T Consensus 69 GGG~~~~~~~~~~L~---~~g~vI~L~~~~~~l~~Rl~~~~~Rp-------------~l~~~~~-~~~~~~~~~-~---R 127 (158)
T PF01202_consen 69 GGGIVLKEENRELLK---ENGLVIYLDADPEELAERLRARDNRP-------------LLKGKME-HEEILELLF-E---R 127 (158)
T ss_dssp -TTGGGSHHHHHHHH---HHSEEEEEE--HHHHHHHHHHHCTSG-------------GTCSHHH-HHHHHHHHH-H---H
T ss_pred CCCCcCcHHHHHHHH---hCCEEEEEeCCHHHHHHHHhCCCCCC-------------CCCCCCh-HHHHHHHHH-H---H
Confidence 2555666666665 33479999999999999997665311 1111111 111122222 1 2
Q ss_pred HHHHHhcCcEEEEeCCCCh-hHHHHHHHHHHH
Q 024067 228 EDYYSKQRKLLNFQVAAAP-GETWQGLLSALH 258 (273)
Q Consensus 228 ~~~y~~~~~~~~id~~~s~-~ev~~~I~~~l~ 258 (273)
...|.+... +.++.+..+ +++.++|.+.|.
T Consensus 128 ~~~Y~~~a~-~~v~~~~~~~~~i~~~i~~~l~ 158 (158)
T PF01202_consen 128 EPLYEQAAD-IVVDTDGSPPEEIAEEILEFLK 158 (158)
T ss_dssp HHHHHHHSS-EEEETSSCHHHHHHHHHHHHH-
T ss_pred HHHHHhcCe-EEEeCCCCCHHHHHHHHHHHhC
Confidence 334555443 557777765 999999998873
No 81
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=99.38 E-value=1e-11 Score=105.45 Aligned_cols=165 Identities=11% Similarity=0.099 Sum_probs=104.8
Q ss_pred EEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCC-----CCCH----------------
Q 024067 66 WVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGK-----LVPE---------------- 124 (273)
Q Consensus 66 Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~-----~~~~---------------- 124 (273)
|.|+|++||||||+++.|++ +|+++|+.|++.++.+.++++..+.+.+.+...- .+..
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~~~~~~~ 80 (196)
T PRK14732 2 IGITGMIGGGKSTALKILEE-LGAFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFNDEEKLKA 80 (196)
T ss_pred EEEECCCCccHHHHHHHHHH-CCCEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCCHHHHHH
Confidence 78999999999999999965 7999999999999888888777777776553221 1221
Q ss_pred --HHHHHHHHHHHHhcc-cCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCC
Q 024067 125 --DVIFALLSKRLEEGY-YRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGG 201 (273)
Q Consensus 125 --~~~~~ll~~~l~~~~-~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~ 201 (273)
+++...+.+.+.... ......+++-..|.-.+. .. ...+|.+|++++|+++..+|+..|...
T Consensus 81 L~~i~hP~v~~~~~~~~~~~~~~~~vi~e~pLL~E~-~~---~~~~D~vi~V~a~~e~r~~RL~~R~g~----------- 145 (196)
T PRK14732 81 LNELIHPLVRKDFQKILQTTAEGKLVIWEVPLLFET-DA---YTLCDATVTVDSDPEESILRTISRDGM----------- 145 (196)
T ss_pred HHHHhhHHHHHHHHHHHHHHhcCCcEEEEeeeeeEc-Cc---hhhCCEEEEEECCHHHHHHHHHHcCCC-----------
Confidence 112222222222100 001123444444543221 00 124799999999999999999998521
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHh
Q 024067 202 ARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHL 259 (273)
Q Consensus 202 ~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~ 259 (273)
+.+.+..|+.. + .+..++-...+ +.|+++++++++..++.+.+..
T Consensus 146 -------s~e~a~~ri~~--Q--~~~~~k~~~aD--~vI~N~~~~~~l~~~v~~l~~~ 190 (196)
T PRK14732 146 -------KKEDVLARIAS--Q--LPITEKLKRAD--YIVRNDGNREGLKEECKILYST 190 (196)
T ss_pred -------CHHHHHHHHHH--c--CCHHHHHHhCC--EEEECCCCHHHHHHHHHHHHHH
Confidence 34566777654 1 13333333334 4567788999999999987653
No 82
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=99.38 E-value=5e-12 Score=105.75 Aligned_cols=119 Identities=21% Similarity=0.250 Sum_probs=79.3
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCC-----CCH---------------
Q 024067 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKL-----VPE--------------- 124 (273)
Q Consensus 65 ~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~-----~~~--------------- 124 (273)
+|.|+|+|||||||+++.|++ +|+++|++|++.++...++.+.+..+.+.+..+.. +..
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~~ 79 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-LGIPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPEKRK 79 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-CCCCEEecCHHHHhhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCHHHHH
Confidence 478999999999999999999 99999999999999888888888888877643221 211
Q ss_pred ---HHHHHHHHHHHHhccc-CCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCC
Q 024067 125 ---DVIFALLSKRLEEGYY-RGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESE 188 (273)
Q Consensus 125 ---~~~~~ll~~~l~~~~~-~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (273)
.++...+...+..... .....+++-..|.-.+.. + ...+|.+|+++||+++..+|+..|.
T Consensus 80 ~l~~i~hp~i~~~~~~~~~~~~~~~~vive~plL~e~~--~--~~~~D~vv~V~a~~~~ri~Rl~~Rd 143 (179)
T cd02022 80 KLEAITHPLIRKEIEEQLAEARKEKVVVLDIPLLFETG--L--EKLVDRVIVVDAPPEIQIERLMKRD 143 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCEEEEEehHhhcCC--c--HHhCCeEEEEECCHHHHHHHHHHcC
Confidence 1222233333322100 011244443344322210 1 1257899999999999999999886
No 83
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=99.37 E-value=1.6e-11 Score=102.48 Aligned_cols=165 Identities=13% Similarity=0.185 Sum_probs=104.1
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHH---HHHHHHHHHHHhcc
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPED---VIFALLSKRLEEGY 139 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~---~~~~ll~~~l~~~~ 139 (273)
+..++|+|++||||||+++.|+..++..+++.+++.... .++.+ ..|....++ .....+........
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~~~~~---------~~r~~-~~g~~~~~~~~~~~~~~~~~~~~~~~ 72 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFSAKFIDGDDLHPAK---------NIDKM-SQGIPLTDEDRLPWLERLNDASYSLY 72 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCEEECCcccCCHh---------HHHHH-hcCCCCCcccchHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999887653210 11111 122222221 11111111111100
Q ss_pred cCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHHH
Q 024067 140 YRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRI 219 (273)
Q Consensus 140 ~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~ 219 (273)
.....|+|+..+. ...+.+.+.....+..+|+|+++.+++.+|+..|..+. .+.+.+..++..
T Consensus 73 ~~~~~g~iv~s~~-~~~~R~~~r~~~~~~~~v~l~a~~~~l~~Rl~~R~~~~----------------~~~~vl~~Q~~~ 135 (176)
T PRK09825 73 KKNETGFIVCSSL-KKQYRDILRKSSPNVHFLWLDGDYETILARMQRRAGHF----------------MPPDLLQSQFDA 135 (176)
T ss_pred hcCCCEEEEEEec-CHHHHHHHHhhCCCEEEEEEeCCHHHHHHHHhcccCCC----------------CCHHHHHHHHHH
Confidence 0125788885553 44444555555666789999999999999999997421 245666666655
Q ss_pred HHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhcC
Q 024067 220 YAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQH 261 (273)
Q Consensus 220 y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~~ 261 (273)
|+.. ......|+.||++.+++++..++...+....
T Consensus 136 ~e~~-------~~~e~~~~~~d~~~~~~~~~~~~~~~~~~~~ 170 (176)
T PRK09825 136 LERP-------CADEHDIARIDVNHDIENVTEQCRQAVQAFR 170 (176)
T ss_pred cCCC-------CCCcCCeEEEECCCCHHHHHHHHHHHHHHHH
Confidence 4421 1112249999999999999999988887653
No 84
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=99.36 E-value=1.2e-11 Score=108.62 Aligned_cols=158 Identities=20% Similarity=0.241 Sum_probs=95.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhC-----CCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcc
Q 024067 65 QWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGY 139 (273)
Q Consensus 65 ~Ivi~G~pGSGKsT~a~~La~~~g-----~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~ 139 (273)
.|+|+|+|||||||+|+.|++.++ +.+++. |.+++........+ ... ..+.....+...+..
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~-D~lr~~~~~~~~~~---e~~-------~~~~~~~~i~~~l~~-- 67 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGT-DLIRESFPVWKEKY---EEF-------IRDSTLYLIKTALKN-- 67 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEcc-HHHHHHhHHhhHHh---HHH-------HHHHHHHHHHHHHhC--
Confidence 478999999999999999999873 445655 44554331100101 111 112333445555543
Q ss_pred cCCcceEEEeCCCCCHHHHHHHH----hhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHH
Q 024067 140 YRGESGFILDGIPRTRIQAEILD----QIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKE 215 (273)
Q Consensus 140 ~~~~~g~IlDg~P~~~~qa~~l~----~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~ 215 (273)
+..+|+|+......+...+. ....+..+|+|++|.+++.+|...|... ..++.+.+
T Consensus 68 ---~~~VI~D~~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R~~~-----------------~~~~~i~~ 127 (249)
T TIGR03574 68 ---KYSVIVDDTNYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIERGEK-----------------IPNEVIKD 127 (249)
T ss_pred ---CCeEEEeccchHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhCCCC-----------------CCHHHHHH
Confidence 34689998765444333332 2245668999999999999999877521 12345555
Q ss_pred HHHHHHHhhHHHHHHHHhcCcEEEEeCCC--ChhHHHHHHHHHHHh
Q 024067 216 KFRIYAEQGKSLEDYYSKQRKLLNFQVAA--APGETWQGLLSALHL 259 (273)
Q Consensus 216 rl~~y~~~~~~l~~~y~~~~~~~~id~~~--s~~ev~~~I~~~l~~ 259 (273)
.+..|+. |...|+-+ ...++||++. +++++++.|...+..
T Consensus 128 l~~r~e~---p~~~~~wd-~~~~~vd~~~~~~~~ei~~~i~~~~~~ 169 (249)
T TIGR03574 128 MYEKFDE---PGTKYSWD-LPDLTIDTTKKIDYNEILEEILEISEN 169 (249)
T ss_pred HHHhhCC---CCCCCCcc-CceEEecCCCCCCHHHHHHHHHHHhhc
Confidence 5555432 21111111 2467888876 678999999988764
No 85
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=99.36 E-value=5.8e-11 Score=99.14 Aligned_cols=167 Identities=17% Similarity=0.191 Sum_probs=112.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCH-----HHH-----------
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPE-----DVI----------- 127 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~-----~~~----------- 127 (273)
..|-++|..||||||+++.+- .+|++.|++|.+.|+...++++.+..|.+.+....+.++ +.+
T Consensus 2 ~iVGLTGgiatGKStVs~~f~-~~G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~~r 80 (225)
T KOG3220|consen 2 LIVGLTGGIATGKSTVSQVFK-ALGIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPKKR 80 (225)
T ss_pred eEEEeecccccChHHHHHHHH-HcCCcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCHHHH
Confidence 467799999999999999997 899999999999999999999999999888755433322 111
Q ss_pred ---HH--------HHHHHHHhcccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccc
Q 024067 128 ---FA--------LLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEF 196 (273)
Q Consensus 128 ---~~--------ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~ 196 (273)
.. .+.+.+..-...++.-+|+| .|.-++- . ++. .+..+|.+.|+.++-++|+..|..
T Consensus 81 ~~Ln~IthP~Ir~em~ke~~~~~l~G~r~ivlD-iPLLFE~-~-~~~--~~~~tvvV~cd~~~Ql~Rl~~Rd~------- 148 (225)
T KOG3220|consen 81 QALNKITHPAIRKEMFKEILKLLLRGYRVIVLD-IPLLFEA-K-LLK--ICHKTVVVTCDEELQLERLVERDE------- 148 (225)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHhcCCeEEEEe-chHHHHH-h-HHh--heeeEEEEEECcHHHHHHHHHhcc-------
Confidence 11 11111111122344555665 4543332 2 222 344688899999999999999872
Q ss_pred cccCCCCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhc
Q 024067 197 LRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQ 260 (273)
Q Consensus 197 y~~~~~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~ 260 (273)
-+++..+.|++.- .|+.+.-+.. -+.+|++++++++.++|...+..-
T Consensus 149 -----------lse~dAe~Rl~sQ----mp~~~k~~~a--~~Vi~Nng~~~~l~~qv~~v~~~~ 195 (225)
T KOG3220|consen 149 -----------LSEEDAENRLQSQ----MPLEKKCELA--DVVIDNNGSLEDLYEQVEKVLALL 195 (225)
T ss_pred -----------ccHHHHHHHHHhc----CCHHHHHHhh--heeecCCCChHHHHHHHHHHHHHh
Confidence 2355666666532 2343333333 266899999999999998887654
No 86
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=99.36 E-value=1.9e-11 Score=114.39 Aligned_cols=169 Identities=17% Similarity=0.170 Sum_probs=104.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCC-----CCCHH-------------
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGK-----LVPED------------- 125 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~-----~~~~~------------- 125 (273)
++|.|+|++||||||+++.|++ +|+++|++|.+.++.+.+++.....+.+.+..+. .+...
T Consensus 2 ~~IgltG~igsGKStv~~~L~~-~G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~~~~~~ 80 (395)
T PRK03333 2 LRIGLTGGIGAGKSTVAARLAE-LGAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFADDEAR 80 (395)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhCCHHHH
Confidence 5799999999999999999987 8999999999999888877666566665543321 12211
Q ss_pred -----HHHHHHHHHHHhcc-cCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCccccccc
Q 024067 126 -----VIFALLSKRLEEGY-YRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRL 199 (273)
Q Consensus 126 -----~~~~ll~~~l~~~~-~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~ 199 (273)
++...+..++.+.. ......+|+.+.|.-.+.. + ...+|.+|++++|.++.++|+..|+.-
T Consensus 81 ~~le~i~hP~I~~~i~~~i~~~~~~~vvv~eipLL~E~~--~--~~~~D~iI~V~ap~e~ri~Rl~~rRg~--------- 147 (395)
T PRK03333 81 AVLNGIVHPLVGARRAELIAAAPEDAVVVEDIPLLVESG--M--APLFHLVVVVDADVEVRVRRLVEQRGM--------- 147 (395)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCCEEEEEeeeeecCC--c--hhhCCEEEEEECCHHHHHHHHHhcCCC---------
Confidence 11122222222110 0123457776666432210 1 125789999999999999999885421
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhcC
Q 024067 200 GGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQH 261 (273)
Q Consensus 200 ~~~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~~ 261 (273)
+.+....++.... +.. ...+.. -+.|+++++++++..++...+....
T Consensus 148 ---------s~~~a~~ri~~Q~----~~e-~k~~~A-D~vIdN~~s~e~l~~~v~~~l~~~~ 194 (395)
T PRK03333 148 ---------AEADARARIAAQA----SDE-QRRAVA-DVWLDNSGTPDELVEAVRALWADRL 194 (395)
T ss_pred ---------CHHHHHHHHHhcC----ChH-HHHHhC-CEEEECCCCHHHHHHHHHHHHHHHH
Confidence 1223334432210 011 111212 3567888999999999988876543
No 87
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=99.35 E-value=1.3e-11 Score=103.27 Aligned_cols=119 Identities=22% Similarity=0.240 Sum_probs=77.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCC-----CCCH--------------
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGK-----LVPE-------------- 124 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~-----~~~~-------------- 124 (273)
+.|.|+|+.||||||+++.|++ +|+++|++|.+.++.+.++++....+.+.+.... .+..
T Consensus 1 ~iIglTG~igsGKStv~~~l~~-~G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~~~~ 79 (180)
T PF01121_consen 1 MIIGLTGGIGSGKSTVSKILAE-LGFPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDPEKL 79 (180)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH-TT-EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSHHHH
T ss_pred CEEEEECCCcCCHHHHHHHHHH-CCCCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCHHHH
Confidence 4788999999999999999998 9999999999999988888888888887765322 1222
Q ss_pred ----HHHHHHHHHHHHhcc--cCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCC
Q 024067 125 ----DVIFALLSKRLEEGY--YRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESE 188 (273)
Q Consensus 125 ----~~~~~ll~~~l~~~~--~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (273)
.++..++.+.+.... .....-+|+|. |.-.+- .+ ...+|.+|++.||.++..+|+..|.
T Consensus 80 ~~L~~iihP~I~~~~~~~~~~~~~~~~~v~e~-pLL~E~--~~--~~~~D~vi~V~a~~e~ri~Rl~~R~ 144 (180)
T PF01121_consen 80 KKLENIIHPLIREEIEKFIKRNKSEKVVVVEI-PLLFES--GL--EKLCDEVIVVYAPEEIRIKRLMERD 144 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHSTSEEEEE--TTTTTT--TG--GGGSSEEEEEE--HHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHhccCCCEEEEEc-chhhhh--hH--hhhhceEEEEECCHHHHHHHHHhhC
Confidence 122233333232210 11124556653 322111 11 1358999999999999999999885
No 88
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=99.33 E-value=9e-11 Score=101.31 Aligned_cols=174 Identities=13% Similarity=0.115 Sum_probs=91.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHH--HHccCCChHHHH------HHHHHHCCC---CCCHHHHHHHHHH
Q 024067 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVR--QELSPRSALYKQ------IANAVNEGK---LVPEDVIFALLSK 133 (273)
Q Consensus 65 ~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr--~~~~~~~~~g~~------i~~~l~~g~---~~~~~~~~~ll~~ 133 (273)
.|+|.|..||||||+++.|++.++..++....... ...+.++.+++. ++.+..+.. .........++..
T Consensus 1 ~I~iEG~~GsGKSTl~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~q~~~~~~ 80 (219)
T cd02030 1 VITVDGNIASGKGKLAKELAEKLGMKYFPEAGIHYLDSTTGDGKPLDPAFNGNCSLEKFYDDPKSNDGNSYRLQSWMYSS 80 (219)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCeeeccchhccccccccccccccccCCCcCHHHHhcCCcccCCcchHHHHHHHHH
Confidence 48899999999999999999999876553321110 011112222221 333333222 1122222122222
Q ss_pred HHHhc------ccCCcceEEEeCCCCCH-H-H-------------HH---HH-----HhhCCCceEEEEccCHHHHHHHH
Q 024067 134 RLEEG------YYRGESGFILDGIPRTR-I-Q-------------AE---IL-----DQIVDVDLVINFKSIEDQLVKRN 184 (273)
Q Consensus 134 ~l~~~------~~~~~~g~IlDg~P~~~-~-q-------------a~---~l-----~~~~~~d~vI~L~~~~e~l~~Rl 184 (273)
+..+- ....+..+|+|.++-+. . | .. .+ .....||++|+|+++++++.+|+
T Consensus 81 R~~~~~~~i~~~l~~g~~VI~DR~~~S~~~f~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~Pd~~i~l~~~~~~~~~Ri 160 (219)
T cd02030 81 RLLQYSDALEHLLSTGQGVVLERSPFSDFVFLEAMYKQGYIRKQCVDHYNEVKGNTIPELLPPHLVIYLDVPVPEVQKRI 160 (219)
T ss_pred HHHHHHHHHHHHhhcCCCEEEecchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHH
Confidence 22110 01124678999875431 1 1 00 01 11146899999999999999999
Q ss_pred hcCCcCCCcccccccCCCCCCCCCcHHHHHHHHH-HHHHhhHHHHHHHHhcCcEEEEeCC--CChhHHHHHHHH
Q 024067 185 LESEAFSPHKEFLRLGGARFSAADAASAWKEKFR-IYAEQGKSLEDYYSKQRKLLNFQVA--AAPGETWQGLLS 255 (273)
Q Consensus 185 ~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~-~y~~~~~~l~~~y~~~~~~~~id~~--~s~~ev~~~I~~ 255 (273)
..|+... .......+.+++. .|.+.. ...|.+...++.+|++ .++++|..+|..
T Consensus 161 ~~R~~~~--------------e~~~~~~yl~~l~~~y~~~~---~~~~~~~~~~i~id~~~~~~~e~i~~~I~~ 217 (219)
T cd02030 161 KKRGDPH--------------EMKVTSAYLQDIENAYKKTF---LPEISEHSEVLQYDWTEAGDTEKVVEDIEY 217 (219)
T ss_pred HHcCCch--------------hhcccHHHHHHHHHHHHHHH---HHhhccCCCEEEEeCCChhhHHHHHHHHHc
Confidence 8876311 0011112222332 222221 1224444568899988 788888887753
No 89
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=99.32 E-value=8.5e-11 Score=97.93 Aligned_cols=162 Identities=15% Similarity=0.137 Sum_probs=90.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCC---eechhHHHHHHccCCChH----HHHHHHHHHCCCCCC--HH-----HHHH
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLLEVP---HISMGSLVRQELSPRSAL----YKQIANAVNEGKLVP--ED-----VIFA 129 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~---~is~~dllr~~~~~~~~~----g~~i~~~l~~g~~~~--~~-----~~~~ 129 (273)
..|+|+|+|||||||+++.|+..++.. .+.....-+.....+..+ .+.+......+.... .. -...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 81 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYGIPA 81 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCccccChH
Confidence 478999999999999999999987642 111000011100011110 122333333332210 00 0011
Q ss_pred HHHHHHHhcccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCc
Q 024067 130 LLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADA 209 (273)
Q Consensus 130 ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~ 209 (273)
.+...+.. +..+|+||... ....+........+|+|+++.+++.+|+..|.. .+
T Consensus 82 ~i~~~~~~-----g~~vv~~g~~~---~~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~------------------~~ 135 (179)
T TIGR02322 82 EIDQWLEA-----GDVVVVNGSRA---VLPEARQRYPNLLVVNITASPDVLAQRLAARGR------------------ES 135 (179)
T ss_pred HHHHHHhc-----CCEEEEECCHH---HHHHHHHHCCCcEEEEEECCHHHHHHHHHHcCC------------------CC
Confidence 12233332 46789998632 122222223344799999999999999998752 12
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHH-hcCcEEEEeCCCChhHHHHHHHHHHHh
Q 024067 210 ASAWKEKFRIYAEQGKSLEDYYS-KQRKLLNFQVAAAPGETWQGLLSALHL 259 (273)
Q Consensus 210 ~e~~~~rl~~y~~~~~~l~~~y~-~~~~~~~id~~~s~~ev~~~I~~~l~~ 259 (273)
++.+.+++..+.. |. ....++.++++++++++.++|...+..
T Consensus 136 ~~~~~~rl~~~~~--------~~~~~~~~~vi~~~~~~ee~~~~i~~~l~~ 178 (179)
T TIGR02322 136 REEIEERLARSAR--------FAAAPADVTTIDNSGSLEVAGETLLRLLRK 178 (179)
T ss_pred HHHHHHHHHHHhh--------cccccCCEEEEeCCCCHHHHHHHHHHHHcc
Confidence 3566777653321 21 223466688888999999999998853
No 90
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.32 E-value=2.4e-11 Score=116.32 Aligned_cols=108 Identities=16% Similarity=0.235 Sum_probs=71.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHhcccCC
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN-EGKLVPEDVIFALLSKRLEEGYYRG 142 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~-~g~~~~~~~~~~ll~~~l~~~~~~~ 142 (273)
|.|+|+|+|||||||+++.|++++|++++++|+++.+.. |..+.+++. .|+....+...+.+.+....
T Consensus 1 m~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~i~~~~------g~~i~~i~~~~Ge~~fr~~E~~~l~~l~~~----- 69 (488)
T PRK13951 1 MRIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIERRE------GRSVRRIFEEDGEEYFRLKEKELLRELVER----- 69 (488)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHc------CCCHHHHHHHhhhHHHHHHHHHHHHHHhhc-----
Confidence 479999999999999999999999999999999887632 223333332 34433344444555443322
Q ss_pred cceEEE-eC--CCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcC
Q 024067 143 ESGFIL-DG--IPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLES 187 (273)
Q Consensus 143 ~~g~Il-Dg--~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R 187 (273)
...|+ .| .+.+..+.+.|.. ..+|+|+++.+++.+|+..+
T Consensus 70 -~~~Vis~Gggvv~~~~~r~~l~~----~~vI~L~as~e~l~~Rl~~~ 112 (488)
T PRK13951 70 -DNVVVATGGGVVIDPENRELLKK----EKTLFLYAPPEVLMERVTTE 112 (488)
T ss_pred -CCEEEECCCccccChHHHHHHhc----CeEEEEECCHHHHHHHhccC
Confidence 12333 22 2223344444542 35999999999999999754
No 91
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=99.32 E-value=4.5e-11 Score=96.65 Aligned_cols=115 Identities=17% Similarity=0.149 Sum_probs=72.6
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHhcccC
Q 024067 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPE---DVIFALLSKRLEEGYYR 141 (273)
Q Consensus 65 ~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~---~~~~~ll~~~l~~~~~~ 141 (273)
.|+|+|+|||||||+|+.|++.++..+++.|++..... ...+..|...++ +.....+..........
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 70 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPPAN----------IAKMAAGIPLNDEDRWPWLQALTDALLAKLAS 70 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcCCEEEeCcccccHHH----------HHHHHcCCCCCccchhhHHHHHHHHHHHHHHh
Confidence 37899999999999999999999999999887664311 011112222221 11111111111110001
Q ss_pred CcceEEEeCCCCCHHHHHHHHhh--CCCceEEEEccCHHHHHHHHhcCCc
Q 024067 142 GESGFILDGIPRTRIQAEILDQI--VDVDLVINFKSIEDQLVKRNLESEA 189 (273)
Q Consensus 142 ~~~g~IlDg~P~~~~qa~~l~~~--~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (273)
.+.++|+|.......+...+... ..+..+|+|+++.+++.+|+..|..
T Consensus 71 ~~~~vVid~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~~ 120 (150)
T cd02021 71 AGEGVVVACSALKRIYRDILRGGAANPRVRFVHLDGPREVLAERLAARKG 120 (150)
T ss_pred CCCCEEEEeccccHHHHHHHHhcCCCCCEEEEEEECCHHHHHHHHHhccc
Confidence 24678999755555666666555 2455799999999999999999863
No 92
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=99.31 E-value=1e-10 Score=97.36 Aligned_cols=159 Identities=14% Similarity=0.135 Sum_probs=88.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCC--eechhHHHHHHccCCChHHHHHHHHHHCC--CCCCHHH-------HHHHH
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVP--HISMGSLVRQELSPRSALYKQIANAVNEG--KLVPEDV-------IFALL 131 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~--~is~~dllr~~~~~~~~~g~~i~~~l~~g--~~~~~~~-------~~~ll 131 (273)
+..|+|+|+|||||||+++.|++.++.+ +++.|++... +......++ ..+-.++ ...+.+. ....+
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~y~~~~~~~ 78 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEA-LPLKCQDAE--GGIEFDGDGGVSPGPEFRLLEGAWYEAV 78 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHh-cChhhcccc--cccccCccCCcccchHHHHHHHHHHHHH
Confidence 5689999999999999999999998654 5577766543 221100000 0000011 1112211 12223
Q ss_pred HHHHHhcccCCcceEEEeC-CCCCHHHHHHHHhhC-CCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCc
Q 024067 132 SKRLEEGYYRGESGFILDG-IPRTRIQAEILDQIV-DVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADA 209 (273)
Q Consensus 132 ~~~l~~~~~~~~~g~IlDg-~P~~~~qa~~l~~~~-~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~ 209 (273)
...+. .+..+|+|. ++......+.+.... .+-.+|+|+|+.+++.+|+..|... .
T Consensus 79 ~~~l~-----~G~~VIvD~~~~~~~~~r~~~~~~~~~~~~~v~l~~~~~~l~~R~~~R~~~------------------~ 135 (175)
T cd00227 79 AAMAR-----AGANVIADDVFLGRAALQDCWRSFVGLDVLWVGVRCPGEVAEGRETARGDR------------------V 135 (175)
T ss_pred HHHHh-----CCCcEEEeeeccCCHHHHHHHHHhcCCCEEEEEEECCHHHHHHHHHhcCCc------------------c
Confidence 33332 357799996 442222223333333 3457999999999999999988621 0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCC-ChhHHHHHHHHHH
Q 024067 210 ASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAA-APGETWQGLLSAL 257 (273)
Q Consensus 210 ~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~-s~~ev~~~I~~~l 257 (273)
......+.. .++......+.||++. +++|+.++|.+.|
T Consensus 136 ~~~~~~~~~----------~~~~~~~~dl~iDts~~s~~e~a~~i~~~l 174 (175)
T cd00227 136 PGQARKQAR----------VVHAGVEYDLEVDTTHKTPIECARAIAARV 174 (175)
T ss_pred chHHHHHHH----------HhcCCCcceEEEECCCCCHHHHHHHHHHhc
Confidence 111111111 1111122357889875 7999999998876
No 93
>KOG3327 consensus Thymidylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=99.28 E-value=2.6e-10 Score=94.06 Aligned_cols=172 Identities=18% Similarity=0.169 Sum_probs=112.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHH-----------H
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIF-----------A 129 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~-----------~ 129 (273)
.++..|++.|..+|||||++..|.+.+. +...- ..+..-....++.|+.|..++.+-...+++++. .
T Consensus 3 ~rg~liV~eGlDrsgKstQ~~~l~~~l~-~~~~~-~~l~~FP~Rst~iGk~i~~YL~k~~dl~d~~iHLlFSAnRwe~~~ 80 (208)
T KOG3327|consen 3 IRGALIVLEGLDRSGKSTQCGKLVESLI-PGLDP-AELLRFPERSTSIGKLIDGYLRKKSDLPDHTIHLLFSANRWEHVS 80 (208)
T ss_pred CCccEEeeeccccCCceeehhHHHHHHH-hccCh-HHhhhcchhcccccHHHHHHHHhccCCcHHHHHHHhccchhhHHH
Confidence 4789999999999999999999999883 22221 223233345678999999999988888887653 3
Q ss_pred HHHHHHHhcccCCcceEEEeCCCCC---HHHHHHHHh---------hCCCceEEEEccCHHHHHHHHhcCCcCCCccccc
Q 024067 130 LLSKRLEEGYYRGESGFILDGIPRT---RIQAEILDQ---------IVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFL 197 (273)
Q Consensus 130 ll~~~l~~~~~~~~~g~IlDg~P~~---~~qa~~l~~---------~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y 197 (273)
++.+.+.. +..+|+|.|--+ ..-|+.|+. ...||+|+||+++++.+ .|..+.+...
T Consensus 81 ~i~e~l~k-----g~~~ivDRY~~SGvAyS~AKgl~~dWc~~pd~gL~KPDlvlfL~v~p~~~-a~rggfG~Er------ 148 (208)
T KOG3327|consen 81 LIKEKLAK-----GTTLIVDRYSFSGVAYSAAKGLDLDWCKQPDVGLPKPDLVLFLDVSPEDA-ARRGGFGEER------ 148 (208)
T ss_pred HHHHHHhc-----CCeEEEecceecchhhhhhcCCCcchhhCCccCCCCCCeEEEEeCCHHHH-HHhcCcchhH------
Confidence 44444543 467899976433 122333321 24799999999999995 4444444211
Q ss_pred ccCCCCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhc-CcEEEEeCCCChhHHHHHHHHHHHhcCC
Q 024067 198 RLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQ-RKLLNFQVAAAPGETWQGLLSALHLQHM 262 (273)
Q Consensus 198 ~~~~~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~-~~~~~id~~~s~~ev~~~I~~~l~~~~~ 262 (273)
.+ ...++++...+.+. +. ++. ..++.+|++.+.++|.+.|...++.-..
T Consensus 149 ---------ye-~v~fqekv~~~~q~---l~---r~e~~~~~~vDAs~sve~V~~~V~~i~e~~~~ 198 (208)
T KOG3327|consen 149 ---------YE-TVAFQEKVLVFFQK---LL---RKEDLNWHVVDASKSVEKVHQQVRSLVENVLS 198 (208)
T ss_pred ---------HH-HHHHHHHHHHHHHH---HH---hccCCCeEEEecCccHHHHHHHHHHHHHHhcc
Confidence 11 12333443322211 11 222 3699999999999999999888775543
No 94
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=99.26 E-value=1.2e-10 Score=96.01 Aligned_cols=157 Identities=11% Similarity=0.078 Sum_probs=93.2
Q ss_pred EcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHH---HHHHHHHHHHHhcccCCcce
Q 024067 69 IGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPED---VIFALLSKRLEEGYYRGESG 145 (273)
Q Consensus 69 ~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~---~~~~ll~~~l~~~~~~~~~g 145 (273)
+|+|||||||+++.|++.+|..+++.|.+..... +.. ...|....++ .....+..............
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~~~~~~---------~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRN---------IEK-MASGEPLNDDDRKPWLQALNDAAFAMQRTNKVS 70 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeCccCCchhh---------hcc-ccCCCCCChhhHHHHHHHHHHHHHHHHHcCCce
Confidence 5999999999999999999999999865421110 000 0112211111 11111111111000012344
Q ss_pred EEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHHHHHHhhH
Q 024067 146 FILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAEQGK 225 (273)
Q Consensus 146 ~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~y~~~~~ 225 (273)
+|+ .......+.+.+.....+..+|+|+|+++++.+|+..|..+. .+.+.+..++..++
T Consensus 71 viv-~s~~~~~~r~~~~~~~~~~~~v~l~a~~~~l~~Rl~~R~~~~----------------a~~~vl~~Q~~~~e---- 129 (163)
T PRK11545 71 LIV-CSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHF----------------FKTQMLVTQFETLQ---- 129 (163)
T ss_pred EEE-EecchHHHHHHHHccCCCEEEEEEECCHHHHHHHHHhccCCC----------------CCHHHHHHHHHHcC----
Confidence 555 433344445555554556689999999999999999997321 14556666655442
Q ss_pred HHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHh
Q 024067 226 SLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHL 259 (273)
Q Consensus 226 ~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~ 259 (273)
|.. .....++.||++.+++++..++...|..
T Consensus 130 p~~---~~e~~~~~id~~~~~~~~~~~~~~~~~~ 160 (163)
T PRK11545 130 EPG---ADETDVLVVDIDQPLEGVVASTIEVIKK 160 (163)
T ss_pred CCC---CCCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 110 0112478999999999999999998853
No 95
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=99.22 E-value=6e-11 Score=95.07 Aligned_cols=103 Identities=22% Similarity=0.274 Sum_probs=64.3
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCCcc
Q 024067 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGES 144 (273)
Q Consensus 65 ~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~~~ 144 (273)
+|+|.|+|||||||+|+.|++++|+++++.+.+..+. .......... ...+...+.+.+... ....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~~i~~e~------~~~~~~~~~~------~~~i~~~l~~~~~~~--~~~~ 66 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEE------VGKLASEVAA------IPEVRKALDERQREL--AKKP 66 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCceeccccCCHHH------HHHHHHHhcc------cHhHHHHHHHHHHHH--hhCC
Confidence 4789999999999999999999999999997443221 1111111000 011122222222221 1235
Q ss_pred eEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcC
Q 024067 145 GFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLES 187 (273)
Q Consensus 145 g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R 187 (273)
+||+||...... + ....+++|+|++|++...+|+..|
T Consensus 67 ~~Vidg~~~~~~----~--~~~~~~~i~l~~~~~~r~~R~~~r 103 (147)
T cd02020 67 GIVLEGRDIGTV----V--FPDADLKIFLTASPEVRAKRRAKQ 103 (147)
T ss_pred CEEEEeeeeeeE----E--cCCCCEEEEEECCHHHHHHHHHHH
Confidence 799998642211 0 124689999999999999999884
No 96
>PRK00300 gmk guanylate kinase; Provisional
Probab=99.22 E-value=2.2e-10 Score=97.39 Aligned_cols=168 Identities=12% Similarity=0.113 Sum_probs=98.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccC---CCh----HHHHHHHHHHCCCCCCH-----HH---
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSP---RSA----LYKQIANAVNEGKLVPE-----DV--- 126 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~---~~~----~g~~i~~~l~~g~~~~~-----~~--- 126 (273)
++..|+|+||+||||||+++.|+..++..++......++-..+ +.+ ..+.+...+..|..+.. ..
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 83 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIENGEFLEWAEVFGNYYGT 83 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCCcCCCeeEEcCHHHHHHHHHcCCcEEEEEECCccccC
Confidence 5778999999999999999999998863333322222210000 000 11334444444433211 00
Q ss_pred HHHHHHHHHHhcccCCcceEEEeCCCCCHHHHHHH-HhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCC
Q 024067 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAEIL-DQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFS 205 (273)
Q Consensus 127 ~~~ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l-~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~ 205 (273)
....+...+.. +..+|+|..+... ..+ +....+-.|+++.++.+++.+|+..|..
T Consensus 84 ~~~~i~~~l~~-----g~~vi~dl~~~g~---~~l~~~~~~~~~I~i~~~s~~~l~~Rl~~R~~---------------- 139 (205)
T PRK00300 84 PRSPVEEALAA-----GKDVLLEIDWQGA---RQVKKKMPDAVSIFILPPSLEELERRLRGRGT---------------- 139 (205)
T ss_pred cHHHHHHHHHc-----CCeEEEeCCHHHH---HHHHHhCCCcEEEEEECcCHHHHHHHHHhcCC----------------
Confidence 12233344443 3567888755332 223 2223333355556788999999998863
Q ss_pred CCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhcCC
Q 024067 206 AADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQHM 262 (273)
Q Consensus 206 ~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~~~ 262 (273)
++++.+++|+..+.... +++...+.++ + +.++++++.+|...+.....
T Consensus 140 --~~~~~i~~rl~~~~~~~----~~~~~~d~vi-~--n~~~e~~~~~l~~il~~~~~ 187 (205)
T PRK00300 140 --DSEEVIARRLAKAREEI----AHASEYDYVI-V--NDDLDTALEELKAIIRAERL 187 (205)
T ss_pred --CCHHHHHHHHHHHHHHH----HhHHhCCEEE-E--CCCHHHHHHHHHHHHHHHHh
Confidence 34678889998887543 3444444333 3 34899999999999988643
No 97
>PRK06547 hypothetical protein; Provisional
Probab=99.21 E-value=8.5e-11 Score=97.77 Aligned_cols=124 Identities=14% Similarity=0.139 Sum_probs=72.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHH-HHHCCCCCCHHHHHHHHHHHHHh-c
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIAN-AVNEGKLVPEDVIFALLSKRLEE-G 138 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~-~l~~g~~~~~~~~~~ll~~~l~~-~ 138 (273)
.+++.|+|.|++||||||+++.|++.++++++++|++.... .......+.+.+ ++..|+...-. .......... .
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~~~~~-~~~~~~~~~l~~~~l~~g~~~~~~--yd~~~~~~~~~~ 89 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLDDLYPGW-HGLAAASEHVAEAVLDEGRPGRWR--WDWANNRPGDWV 89 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecccceeccc-ccCChHHHHHHHHHHhCCCCceec--CCCCCCCCCCcE
Confidence 46788999999999999999999999999999999887421 111111222333 23334321100 0000000000 0
Q ss_pred ccCCcceEEEeCCCCCHHH-HHHHHhhCCCceEEEEccCHHHHHHHHhcCC
Q 024067 139 YYRGESGFILDGIPRTRIQ-AEILDQIVDVDLVINFKSIEDQLVKRNLESE 188 (273)
Q Consensus 139 ~~~~~~g~IlDg~P~~~~q-a~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (273)
.......+|++|...-..+ ...++. ...-++|+|++|.++..+|+..|.
T Consensus 90 ~l~~~~vVIvEG~~al~~~~r~~~d~-~g~v~~I~ld~~~~vr~~R~~~Rd 139 (172)
T PRK06547 90 SVEPGRRLIIEGVGSLTAANVALASL-LGEVLTVWLDGPEALRKERALARD 139 (172)
T ss_pred EeCCCCeEEEEehhhccHHHHHHhcc-CCCEEEEEEECCHHHHHHHHHhcC
Confidence 0112356889986332221 222221 223389999999999999999986
No 98
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=99.20 E-value=6.8e-10 Score=92.11 Aligned_cols=166 Identities=14% Similarity=0.108 Sum_probs=106.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCCh--------HHHHHHHHHHCCCCCCHHH-------
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSA--------LYKQIANAVNEGKLVPEDV------- 126 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~--------~g~~i~~~l~~g~~~~~~~------- 126 (273)
+|..|+|.||+|+||||+.+.|-+..+ .++|+..--|+ ..++.. ..+++.+++.+|+.+....
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~-l~~SVS~TTR~-pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~gnyYG 80 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDDK-LRFSVSATTRK-PRPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGNYYG 80 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhcC-eEEEEEeccCC-CCCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEcCCccc
Confidence 689999999999999999999999984 44555433432 222221 1256777888887665422
Q ss_pred -HHHHHHHHHHhcccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccC-HHHHHHHHhcCCcCCCcccccccCCCCC
Q 024067 127 -IFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSI-EDQLVKRNLESEAFSPHKEFLRLGGARF 204 (273)
Q Consensus 127 -~~~ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~-~e~l~~Rl~~R~~~~~~~~~y~~~~~~~ 204 (273)
-..-+.+.+.. +..+|+|---.. +..+....+....||+.+| .+++.+|+.+|+
T Consensus 81 T~~~~ve~~~~~-----G~~vildId~qG---a~qvk~~~p~~v~IFi~pPs~eeL~~RL~~Rg---------------- 136 (191)
T COG0194 81 TSREPVEQALAE-----GKDVILDIDVQG---ALQVKKKMPNAVSIFILPPSLEELERRLKGRG---------------- 136 (191)
T ss_pred CcHHHHHHHHhc-----CCeEEEEEehHH---HHHHHHhCCCeEEEEEcCCCHHHHHHHHHccC----------------
Confidence 23344454544 467888743222 2222222233345565554 488999999887
Q ss_pred CCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhcCC
Q 024067 205 SAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQHM 262 (273)
Q Consensus 205 ~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~~~ 262 (273)
.|+++.+++|+...+..+.. +.+.+. +.+ +.+.+..+++|...+...+.
T Consensus 137 --tds~e~I~~Rl~~a~~Ei~~----~~~fdy-viv--Ndd~e~a~~~l~~ii~aer~ 185 (191)
T COG0194 137 --TDSEEVIARRLENAKKEISH----ADEFDY-VIV--NDDLEKALEELKSIILAERL 185 (191)
T ss_pred --CCCHHHHHHHHHHHHHHHHH----HHhCCE-EEE--CccHHHHHHHHHHHHHHHHH
Confidence 45688999999988766543 333332 333 47788899998888876643
No 99
>PRK05541 adenylylsulfate kinase; Provisional
Probab=99.19 E-value=4.7e-10 Score=93.29 Aligned_cols=107 Identities=19% Similarity=0.107 Sum_probs=63.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC-----CCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHH----HHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV----IFALL 131 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g-----~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~----~~~ll 131 (273)
.+|..|+|+|+|||||||+++.|+++++ ..+++.+ -+++..... |...+... ....+
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d-~~r~~~~~~-------------~~~~~~~~~~~~~~~~l 70 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGD-ELREILGHY-------------GYDKQSRIEMALKRAKL 70 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecH-HHHhhcCCC-------------CCCHHHHHHHHHHHHHH
Confidence 3678999999999999999999999985 5666654 344432211 00001111 11122
Q ss_pred HHHHHhcccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHh
Q 024067 132 SKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNL 185 (273)
Q Consensus 132 ~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~ 185 (273)
...+.. .+..+|+|+......-.........+.++|+|+++.+++.+|+.
T Consensus 71 ~~~l~~----~g~~VI~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~~~~R~~ 120 (176)
T PRK05541 71 AKFLAD----QGMIVIVTTISMFDEIYAYNRKHLPNYFEVYLKCDMEELIRRDQ 120 (176)
T ss_pred HHHHHh----CCCEEEEEeCCcHHHHHHHHHhhcCCeEEEEEeCCHHHHHHhch
Confidence 222221 23568888754221111122223455689999999999999975
No 100
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=99.17 E-value=9.2e-12 Score=96.86 Aligned_cols=109 Identities=25% Similarity=0.328 Sum_probs=60.7
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcc-cCCc
Q 024067 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGY-YRGE 143 (273)
Q Consensus 65 ~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~-~~~~ 143 (273)
+|+|.|+|||||||+|+.|++++|++++++|++++..... + ...+...........+...+.... ....
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~~~~~~~~~--~--------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 70 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVISMDDLIREPGWI--E--------RDDDEREYIDADIDLLDDILEQLQNKPDN 70 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHHHHCCGTHC--H--------GCTTCCHHHHHHHHHHHHHHHHHHETTT-
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEEEecceEEecccc--c--------cCcchhhHHHHHHHHHHHHHHhhhccCCC
Confidence 5889999999999999999999999999999954321110 0 001111001112223333332210 1235
Q ss_pred ceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcC
Q 024067 144 SGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLES 187 (273)
Q Consensus 144 ~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R 187 (273)
..||+||.-. ... + + .....+.+|++.++.+.+.+|+..|
T Consensus 71 ~~~ii~g~~~-~~~-~-~-~~~~~~~~i~l~~~~~~~~~~~~~R 110 (121)
T PF13207_consen 71 DNWIIDGSYE-SEM-E-I-RLPEFDHVIYLDAPDEECRERRLKR 110 (121)
T ss_dssp -EEEEECCSC-HCC-H-S-CCHHGGCEEEEEEEEHHHHHHHHHH
T ss_pred CeEEEeCCCc-cch-h-h-hhhcCCEEEEEECCCHHHHHHHHHH
Confidence 7899999321 110 0 1 1123457899998887555555444
No 101
>PRK14737 gmk guanylate kinase; Provisional
Probab=99.16 E-value=1.3e-09 Score=91.81 Aligned_cols=165 Identities=10% Similarity=0.062 Sum_probs=99.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCCh--------HHHHHHHHHHCCCCCCHH-------
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSA--------LYKQIANAVNEGKLVPED------- 125 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~--------~g~~i~~~l~~g~~~~~~------- 125 (273)
.+++.|+|+||+||||+|+++.|.+++.-.+.+....-|. ..++.. .-+++...+.+|..+...
T Consensus 2 ~~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~-~r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g~~Y 80 (186)
T PRK14737 2 ASPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRA-PRPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHDNYY 80 (186)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCC-CCCCCCCCceeEeCCHHHHHHHHHcCCeEEEEEECCeee
Confidence 3688999999999999999999999873223333222221 111111 124556666666554321
Q ss_pred -HHHHHHHHHHHhcccCCcceEEEeCCCCCHHHHHHHHhhCCCc--eEEEEccC-HHHHHHHHhcCCcCCCcccccccCC
Q 024067 126 -VIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVD--LVINFKSI-EDQLVKRNLESEAFSPHKEFLRLGG 201 (273)
Q Consensus 126 -~~~~ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d--~vI~L~~~-~e~l~~Rl~~R~~~~~~~~~y~~~~ 201 (273)
+-.+-+...+.. ++.+|+|.-+....+... . .|+ ++|++.+| .+++.+|+..|..
T Consensus 81 Gt~~~~i~~~~~~-----g~~~i~d~~~~g~~~l~~---~-~~~~~~~Ifi~pps~e~l~~RL~~R~~------------ 139 (186)
T PRK14737 81 GTPKAFIEDAFKE-----GRSAIMDIDVQGAKIIKE---K-FPERIVTIFIEPPSEEEWEERLIHRGT------------ 139 (186)
T ss_pred cCcHHHHHHHHHc-----CCeEEEEcCHHHHHHHHH---h-CCCCeEEEEEECCCHHHHHHHHHhcCC------------
Confidence 122334444443 477899976655555432 2 243 58888875 6889999988863
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhc
Q 024067 202 ARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQ 260 (273)
Q Consensus 202 ~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~ 260 (273)
++++.+++|+...... .+ +...-. +.|+.+ +.++...+|...|..+
T Consensus 140 ------~s~e~i~~Rl~~~~~e----~~-~~~~~D-~vI~N~-dle~a~~ql~~ii~~~ 185 (186)
T PRK14737 140 ------DSEESIEKRIENGIIE----LD-EANEFD-YKIIND-DLEDAIADLEAIICGK 185 (186)
T ss_pred ------CCHHHHHHHHHHHHHH----Hh-hhccCC-EEEECc-CHHHHHHHHHHHHhcC
Confidence 2456788888764322 12 222112 334544 8999999999888653
No 102
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=99.16 E-value=9.6e-10 Score=105.35 Aligned_cols=40 Identities=20% Similarity=0.253 Sum_probs=37.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQE 101 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~ 101 (273)
++++|.|.||+||||||+++.|++++|+.+++.|+++|..
T Consensus 283 ~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR~~ 322 (512)
T PRK13477 283 RQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRAV 322 (512)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceehHH
Confidence 5788999999999999999999999999999999999863
No 103
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=99.16 E-value=6.1e-10 Score=93.86 Aligned_cols=118 Identities=18% Similarity=0.200 Sum_probs=63.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHh---cc--
Q 024067 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEE---GY-- 139 (273)
Q Consensus 65 ~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~---~~-- 139 (273)
.|+|.|++||||||+++.|++.+++.++.-.. . ......++ ++.+..+-..........++..+.++ ..
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~~~~~~~Ep~--~-~~~~~~~~---l~~~~~~~~~~~~~~q~~~~~~r~~~~~~~~~~ 74 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHLGYEVVPEPV--E-PDVEGNPF---LEKFYEDPKRWAFPFQLYFLLSRLKQYKDALEH 74 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCccccccc--c-ccCCCCCC---HHHHHhCHHhccHHHHHHHHHHHHHHHHHHHhh
Confidence 48899999999999999999998875442210 0 00001111 22222211001111111111111111 00
Q ss_pred cCCcceEEEeCCCCCHH--------H-------HH----HHHh----hCCCceEEEEccCHHHHHHHHhcCC
Q 024067 140 YRGESGFILDGIPRTRI--------Q-------AE----ILDQ----IVDVDLVINFKSIEDQLVKRNLESE 188 (273)
Q Consensus 140 ~~~~~g~IlDg~P~~~~--------q-------a~----~l~~----~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (273)
...+..+|+|.+|.+.. + .+ .++. ...||++|+|+++++++++|+..|.
T Consensus 75 ~~~~~~vI~DR~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~~i~l~~~~~~~~~Ri~~R~ 146 (193)
T cd01673 75 LSTGQGVILERSIFSDRVFAEANLKEGGIMKTEYDLYNELFDNLIPELLPPDLVIYLDASPETCLKRIKKRG 146 (193)
T ss_pred cccCCceEEEcChhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence 12356789998775421 1 00 1111 1369999999999999999998876
No 104
>PRK05480 uridine/cytidine kinase; Provisional
Probab=99.14 E-value=1e-09 Score=93.83 Aligned_cols=123 Identities=15% Similarity=0.161 Sum_probs=68.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC---CCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHh
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE---VPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEE 137 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g---~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~ 137 (273)
.++.+|.|.|++||||||+++.|++.++ +.+++.|+.+...... +..+............+.+.+.+.+......
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~ 81 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYKDQSHL--SFEERVKTNYDHPDAFDHDLLIEHLKALKAG 81 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCccccCcccC--CHHHhcccCccCcccccHHHHHHHHHHHHcC
Confidence 4788999999999999999999999983 4567887765421100 0000000000000111122222222221110
Q ss_pred c-------------------ccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCc
Q 024067 138 G-------------------YYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEA 189 (273)
Q Consensus 138 ~-------------------~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (273)
. ......-+|+||...-.. . .+. ..+|++|++++|.++.++|...|..
T Consensus 82 ~~v~~p~~d~~~~~~~~~~~~~~~~~~vivEg~~l~~~-~-~~~--~~~d~~I~v~~~~~~~~~R~~~Rd~ 148 (209)
T PRK05480 82 KAIEIPVYDYTEHTRSKETIRVEPKDVIILEGILLLED-E-RLR--DLMDIKIFVDTPLDIRLIRRLKRDV 148 (209)
T ss_pred CccccCcccccccccCCCeEEeCCCCEEEEEeehhcCc-h-hHh--hhhceeEEEeCChhHHHHHHHhhcc
Confidence 0 001123577888643211 0 111 2468999999999999999988864
No 105
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=99.12 E-value=7.4e-10 Score=92.18 Aligned_cols=163 Identities=12% Similarity=0.093 Sum_probs=94.3
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCC---Ch----HHHHHHHHHHCCCCCCHH--------HH
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPR---SA----LYKQIANAVNEGKLVPED--------VI 127 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~---~~----~g~~i~~~l~~g~~~~~~--------~~ 127 (273)
+..|+|+||+||||||+++.|++.++..++......++...+. .. ..+.+...+..+..+... +.
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~ 80 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGEVDGVDYFFVSKEEFEEMIAAGEFLEWAEVHGNYYGTP 80 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCCcCCcEEEEecHHHHHHHHHcCCcEEEEEECCeeeCCc
Confidence 4679999999999999999999987655555433333221110 00 012344444444433211 11
Q ss_pred HHHHHHHHHhcccCCcceEEEeCCCCCHHHHHHH-HhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCC
Q 024067 128 FALLSKRLEEGYYRGESGFILDGIPRTRIQAEIL-DQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSA 206 (273)
Q Consensus 128 ~~ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l-~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~ 206 (273)
...+.+.+.+ +..+|+|.-+. ....+ +.+..+..++++.++++.+.+|+..|..
T Consensus 81 ~~~i~~~~~~-----g~~vi~d~~~~---~~~~~~~~~~~~~~i~~~~~~~e~~~~Rl~~r~~----------------- 135 (180)
T TIGR03263 81 KSPVEEALAA-----GKDVLLEIDVQ---GARQVKKKFPDAVSIFILPPSLEELERRLRKRGT----------------- 135 (180)
T ss_pred HHHHHHHHHC-----CCeEEEECCHH---HHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCC-----------------
Confidence 2334444443 36688886432 22323 3333444566667778999999988763
Q ss_pred CCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHH
Q 024067 207 ADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALH 258 (273)
Q Consensus 207 ~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~ 258 (273)
++++.+++|+..+..... +-...+ .+ |.. .+.+++.++|...+.
T Consensus 136 -~~~~~i~~rl~~~~~~~~----~~~~~d-~~-i~n-~~~~~~~~~l~~~~~ 179 (180)
T TIGR03263 136 -DSEEVIERRLAKAKKEIA----HADEFD-YV-IVN-DDLEKAVEELKSIIL 179 (180)
T ss_pred -CCHHHHHHHHHHHHHHHh----ccccCc-EE-EEC-CCHHHHHHHHHHHHh
Confidence 345678888877654322 111122 33 343 478999999988764
No 106
>PRK12338 hypothetical protein; Provisional
Probab=99.12 E-value=5.1e-09 Score=94.64 Aligned_cols=179 Identities=13% Similarity=0.153 Sum_probs=96.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCC--Ch----H----HHHHHHHHHCCCC-CC-H-----
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPR--SA----L----YKQIANAVNEGKL-VP-E----- 124 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~--~~----~----g~~i~~~l~~g~~-~~-~----- 124 (273)
+|..|+|.|+|||||||+|+.||+++|+.++..+|.+++.+.+- .+ + ++... .+..... .+ .
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r~~~~~~~~~~~~P~l~~ssy~a~~-~l~~~~~~~~~~~~i~~ 81 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTLNIKHLIETDFIREVVRGIIGKEYAPALHKSSYNAYT-ALRDKENFKNNEELICA 81 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHHHHHHcCCCCcccCchhhcccHHHHh-hcCCcccccchHHHHHH
Confidence 46789999999999999999999999999997778888865531 11 0 11110 1111111 11 1
Q ss_pred ------HHHHHHHHHHHHhcccCCcceEEEeCCCCCHHHHHHHH--hhCCCceEEEEccCHHHHHHHHhcCCcCCCcccc
Q 024067 125 ------DVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILD--QIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEF 196 (273)
Q Consensus 125 ------~~~~~ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~--~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~ 196 (273)
+.+...+...+... ...+..+|++|.--...-..... ....+ .++.|..+++...+|+..|......+
T Consensus 82 gf~~q~~~V~~~i~~vi~r~-~~~g~svIiEGvhl~P~~i~~~~~~~~~~v-~~~vl~~dee~h~~Rf~~R~~~~~r~-- 157 (319)
T PRK12338 82 GFEEHASFVIPAIEKVIERA-VTDSDDIVIEGVHLVPGLIDIEQFEENASI-HFFILSADEEVHKERFVKRAMEIKRG-- 157 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hcCCCeEEEEeccccHHHHhhhhhcccCce-EEEEEECCHHHHHHHHHHhhhccCCc--
Confidence 12222222222221 13457899999754433222111 11222 35555588899999999887432100
Q ss_pred cccCCCCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhcC
Q 024067 197 LRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQH 261 (273)
Q Consensus 197 y~~~~~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~~ 261 (273)
....+.+...+...+-+.+.-.+. .+..++ +.+.++..+.|.+.+....
T Consensus 158 --------------~~~l~~f~~Ir~Iq~~l~~~A~e~-~VpvI~-N~did~Tv~~ile~I~e~s 206 (319)
T PRK12338 158 --------------GKQLEYFRENRIIHDHLVEQAREH-NVPVIK-NDDIDCTVKKMLSYIREVC 206 (319)
T ss_pred --------------hhhhhChHHHHHHHHHHHHhHhhC-CCceeC-CCcHHHHHHHHHHHHHhhe
Confidence 011111222221111122221222 344455 6889999999998887653
No 107
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.11 E-value=3.3e-09 Score=89.91 Aligned_cols=38 Identities=21% Similarity=0.266 Sum_probs=36.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHH
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQE 101 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~ 101 (273)
+.|.|-||.||||||+|+.||++||++|+++|-++|..
T Consensus 5 ~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa~ 42 (222)
T COG0283 5 IIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAV 42 (222)
T ss_pred eEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHHH
Confidence 78999999999999999999999999999999999853
No 108
>PRK00889 adenylylsulfate kinase; Provisional
Probab=99.10 E-value=1.8e-09 Score=89.67 Aligned_cols=108 Identities=19% Similarity=0.177 Sum_probs=62.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC-----CCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHH--HHHHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIF--ALLSKR 134 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g-----~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~--~ll~~~ 134 (273)
++..|+|+|+|||||||+++.|++.+. +.+++.|.+ ++.+..+-.+... ..+.... ..+...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~-~~~~~~~~~~~~~----------~r~~~~~~~~~~a~~ 71 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAV-RTNLSKGLGFSKE----------DRDTNIRRIGFVANL 71 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccH-HHHHhcCCCCChh----------hHHHHHHHHHHHHHH
Confidence 567899999999999999999999882 567877544 3332211000000 0000111 112222
Q ss_pred HHhcccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHH
Q 024067 135 LEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRN 184 (273)
Q Consensus 135 l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl 184 (273)
+.. .+..+|+|+.-......+.+......-.+|+|+|+.+++.+|.
T Consensus 72 ~~~----~g~~vi~~~~~~~~~~~~~l~~~~~~~~~v~l~~~~e~~~~R~ 117 (175)
T PRK00889 72 LTR----HGVIVLVSAISPYRETREEVRANIGNFLEVFVDAPLEVCEQRD 117 (175)
T ss_pred HHh----CCCEEEEecCCCCHHHHHHHHhhcCCeEEEEEcCCHHHHHHhC
Confidence 221 2345677765223333444444444456999999999999994
No 109
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=99.06 E-value=1.8e-08 Score=82.14 Aligned_cols=173 Identities=14% Similarity=0.165 Sum_probs=95.6
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh-CCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccC
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLL-EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~-g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~ 141 (273)
++.++++|.||+||||+++.+.+.+ +.++++.++++-+...... +- +.++.+. -+|.+....+...+..... .
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l~~~~ivNyG~~Mle~A~k~g-lv-e~rD~~R---klp~e~Q~~lq~~Aa~rI~-~ 77 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKELVKHKIVNYGDLMLEIAKKKG-LV-EHRDEMR---KLPLENQRELQAEAAKRIA-E 77 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHHhhceeeeHhHHHHHHHHHhC-Cc-ccHHHHh---cCCHHHHHHHHHHHHHHHH-H
Confidence 5789999999999999999999999 8888999998865332110 00 1112222 2455554444443333221 0
Q ss_pred CcceEEEeCCCCCHHHH-------HHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHH
Q 024067 142 GESGFILDGIPRTRIQA-------EILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWK 214 (273)
Q Consensus 142 ~~~g~IlDg~P~~~~qa-------~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~ 214 (273)
....+|+|+.-.-..-+ ...-....||.+|.|..+++.++.|........ +..++.+.++
T Consensus 78 ~~~~iivDtH~~IkTP~GylpgLP~~Vl~~l~pd~ivllEaDp~~Il~RR~~D~~r~-------------Rd~es~e~i~ 144 (189)
T COG2019 78 MALEIIVDTHATIKTPAGYLPGLPSWVLEELNPDVIVLLEADPEEILERRLRDSRRD-------------RDVESVEEIR 144 (189)
T ss_pred hhhceEEeccceecCCCccCCCCcHHHHHhcCCCEEEEEeCCHHHHHHHHhcccccc-------------cccccHHHHH
Confidence 11227888431100000 111123689999999999999888776542110 2233444554
Q ss_pred HHHHHHHHhhHHHHHHHHh-cC-cEEEEe-CCCChhHHHHHHHHHHH
Q 024067 215 EKFRIYAEQGKSLEDYYSK-QR-KLLNFQ-VAAAPGETWQGLLSALH 258 (273)
Q Consensus 215 ~rl~~y~~~~~~l~~~y~~-~~-~~~~id-~~~s~~ev~~~I~~~l~ 258 (273)
+..+.-+-..- -|.- .+ .+..+. -++.+++-..+|...|.
T Consensus 145 eHqe~nR~aA~----a~A~~~gatVkIV~n~~~~~e~Aa~eiv~~l~ 187 (189)
T COG2019 145 EHQEMNRAAAM----AYAILLGATVKIVENHEGDPEEAAEEIVELLD 187 (189)
T ss_pred HHHHHHHHHHH----HHHHHhCCeEEEEeCCCCCHHHHHHHHHHHHh
Confidence 43321111100 1111 12 234443 35689999999988775
No 110
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=99.06 E-value=2.6e-09 Score=104.19 Aligned_cols=162 Identities=14% Similarity=0.158 Sum_probs=90.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCC------CeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHH--HH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEV------PHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFAL--LS 132 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g~------~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~l--l~ 132 (273)
.++..|+|+|+|||||||+|+.|+++++. .+++.| .+++.+.++..+...-++ .....+ +.
T Consensus 390 ~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D-~vr~~l~ge~~f~~~er~----------~~~~~l~~~a 458 (568)
T PRK05537 390 KQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGD-VVRKHLSSELGFSKEDRD----------LNILRIGFVA 458 (568)
T ss_pred CCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCc-HHHHhccCCCCCCHHHHH----------HHHHHHHHHH
Confidence 45778999999999999999999999985 788775 556555432111110000 011111 11
Q ss_pred HHHHhcccCCcceEEEeC-CCCCHHHH---HHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCC
Q 024067 133 KRLEEGYYRGESGFILDG-IPRTRIQA---EILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAAD 208 (273)
Q Consensus 133 ~~l~~~~~~~~~g~IlDg-~P~~~~qa---~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d 208 (273)
..+. ..+.++|+|. +|...... +.+... ....+|+|+++.+++.+|.... . |. ..
T Consensus 459 ~~v~----~~Gg~vI~~~~~p~~~~R~~nr~llk~~-g~fivV~L~~p~e~l~~R~rr~-L-------l~--------~~ 517 (568)
T PRK05537 459 SEIT----KNGGIAICAPIAPYRATRREVREMIEAY-GGFIEVHVATPLEVCEQRDRKG-L-------YA--------KA 517 (568)
T ss_pred HHHH----hCCCEEEEEeCCchHHHHHHHHHHHhhc-CCEEEEEEcCCHHHHHHhcccc-c-------cc--------cc
Confidence 1111 2357788885 45442222 222222 2235899999999999996321 1 00 00
Q ss_pred cHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCC-CChhHHHHHHHHHHHhcC
Q 024067 209 AASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVA-AAPGETWQGLLSALHLQH 261 (273)
Q Consensus 209 ~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~-~s~~ev~~~I~~~l~~~~ 261 (273)
..+. +..+. .....||....--+.||++ .+++++.++|...|..+.
T Consensus 518 ~~~~----i~~l~---~~R~~yy~p~~Adl~IDt~~~s~~eiv~~Il~~L~~~g 564 (568)
T PRK05537 518 REGK----IKGFT---GISDPYEPPANPELVIDTTNVTPDECAHKILLYLEEKG 564 (568)
T ss_pred hhch----hhccc---cccccccCCCCCcEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 0111 11111 1123356411112567776 589999999999987653
No 111
>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]
Probab=99.02 E-value=1.8e-08 Score=88.12 Aligned_cols=179 Identities=16% Similarity=0.206 Sum_probs=97.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCee---chhHHHHHHccCC-ChHH---------HHHHHHHH--CCCCCCHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHI---SMGSLVRQELSPR-SALY---------KQIANAVN--EGKLVPED 125 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~i---s~~dllr~~~~~~-~~~g---------~~i~~~l~--~g~~~~~~ 125 (273)
.+.+.|++.|+.|||||++|+.||+++|+.|+ .+|+++-...-.. ..+. -.|+..-. .|. ..-.
T Consensus 69 enSkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyvdsyg~D~r~l~~~~p~~cr~~di~~Fy~dPS~d-lsa~ 147 (393)
T KOG3877|consen 69 ENSKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYVDSYGNDLRNLYNKFPARCRLPDISMFYKDPSGD-LSAA 147 (393)
T ss_pred ccceEEEEeCCcccCchhHHHHHHHHhCCcccccccccceeecccCccchhccccCCcccCchhHHHhccCCCcc-HHHH
Confidence 35789999999999999999999999998765 4555543211100 0000 00111110 010 0111
Q ss_pred HHHHH----H---HHHHHhcccCCcceEEEeCCCCC-HHHHHHHH----------------------hhCCCceEEEEcc
Q 024067 126 VIFAL----L---SKRLEEGYYRGESGFILDGIPRT-RIQAEILD----------------------QIVDVDLVINFKS 175 (273)
Q Consensus 126 ~~~~l----l---~~~l~~~~~~~~~g~IlDg~P~~-~~qa~~l~----------------------~~~~~d~vI~L~~ 175 (273)
....+ + .++|+.. ...++|+||...|-+ .-.++.|. +.+.|.+||+|++
T Consensus 148 ~Q~r~y~~R~~QY~dAL~Hi-L~TGQGVVLERsp~SDFVF~eAM~~qgyi~~~~~~hYnevr~nti~~ll~PHLViYld~ 226 (393)
T KOG3877|consen 148 MQDRIYNCRFDQYLDALAHI-LNTGQGVVLERSPHSDFVFAEAMRDQGYIGHEYFKHYNEVRKNTIPQLLWPHLVIYLDT 226 (393)
T ss_pred HHHHHHHhHHHHHHHHHHHH-HhcCCeEEEecCcchhHHHHHHHHhcCcchhHHHHHHHHHHhhhhhhhcCccEEEEEcC
Confidence 11111 1 1222221 134799999987765 22333331 1247999999999
Q ss_pred CHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCC--CChhHHHHHH
Q 024067 176 IEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVA--AAPGETWQGL 253 (273)
Q Consensus 176 ~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~--~s~~ev~~~I 253 (273)
|...+.+++..|+.... . + .-++.-++.-=+.|++. .+.-|.++..++.-|.. ++.+.|+++|
T Consensus 227 Pv~~v~~~Ik~rg~~~E----------i-k-~~s~aYL~diE~~YK~~---fL~e~s~h~eiL~Ydwt~~gdt~~VVEDI 291 (393)
T KOG3877|consen 227 PVNKVLENIKRRGNTDE----------I-K-TVSEAYLKDIEESYKDS---FLREYSNHSEILAYDWTKPGDTDAVVEDI 291 (393)
T ss_pred CcHHHHHHHHhcCCCcc----------e-e-ehhHHHHHHHHHHHHHH---HHHHHhhhhheeeeecccCCCchhHHHhh
Confidence 99999999998875220 0 0 00111222222344433 22335555556666654 4677888887
Q ss_pred HHH
Q 024067 254 LSA 256 (273)
Q Consensus 254 ~~~ 256 (273)
...
T Consensus 292 Erl 294 (393)
T KOG3877|consen 292 ERL 294 (393)
T ss_pred hhh
Confidence 654
No 112
>PRK00023 cmk cytidylate kinase; Provisional
Probab=99.01 E-value=2.1e-08 Score=86.97 Aligned_cols=38 Identities=24% Similarity=0.297 Sum_probs=35.6
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHH
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQ 100 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~ 100 (273)
.+.|.|.|++||||||+++.|+++||+++++.|+++|.
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~~r~ 41 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYRA 41 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchhHHH
Confidence 46899999999999999999999999999999998775
No 113
>COG0645 Predicted kinase [General function prediction only]
Probab=98.99 E-value=2.6e-08 Score=81.51 Aligned_cols=116 Identities=17% Similarity=0.169 Sum_probs=76.9
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCH---HH---HHHHHHHHHHh
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPE---DV---IFALLSKRLEE 137 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~---~~---~~~ll~~~l~~ 137 (273)
..+++.|.|||||||+|+.|++.+|..+|.+| .+++.+.+-... .. ...|...+. .+ ........+.
T Consensus 2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD-~irk~L~g~p~~-~r----~~~g~ys~~~~~~vy~~l~~~A~l~l~- 74 (170)
T COG0645 2 RLVLVGGLPGSGKSTLARGLAELLGAIRLRSD-VIRKRLFGVPEE-TR----GPAGLYSPAATAAVYDELLGRAELLLS- 74 (170)
T ss_pred eEEEEecCCCccHhHHHHHHHhhcCceEEehH-HHHHHhcCCccc-cc----CCCCCCcHHHHHHHHHHHHHHHHHHHh-
Confidence 46789999999999999999999999999985 566666651110 00 001111111 11 1122222222
Q ss_pred cccCCcceEEEeCCCCCHHHHHHHHhh----CCCceEEEEccCHHHHHHHHhcCCcC
Q 024067 138 GYYRGESGFILDGIPRTRIQAEILDQI----VDVDLVINFKSIEDQLVKRNLESEAF 190 (273)
Q Consensus 138 ~~~~~~~g~IlDg~P~~~~qa~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R~~~ 190 (273)
.+..+|+|+......+.+..... .-+...|.+.++.+++..|+..|+.+
T Consensus 75 ----~G~~VVlDa~~~r~~~R~~~~~~A~~~gv~~~li~~~ap~~v~~~rl~aR~~d 127 (170)
T COG0645 75 ----SGHSVVLDATFDRPQERALARALARDVGVAFVLIRLEAPEEVLRGRLAARKGD 127 (170)
T ss_pred ----CCCcEEEecccCCHHHHHHHHHHHhccCCceEEEEcCCcHHHHHHHHHHhCCC
Confidence 35789999977776666655443 33456799999999999999999853
No 114
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.98 E-value=1.3e-09 Score=109.23 Aligned_cols=38 Identities=21% Similarity=0.305 Sum_probs=35.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHH
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQE 101 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~ 101 (273)
+.|.|.|||||||||+|+.||+++|+.|++++.+.|..
T Consensus 2 ~~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~~r~~ 39 (712)
T PRK09518 2 IIVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMYRAC 39 (712)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEeecCcEeHHH
Confidence 47899999999999999999999999999999998863
No 115
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=98.96 E-value=3.1e-08 Score=85.42 Aligned_cols=39 Identities=18% Similarity=0.251 Sum_probs=35.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHH
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQE 101 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~ 101 (273)
++.|.|.||+||||||+++.|++++++++++.|++.+..
T Consensus 2 ~~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~~ 40 (217)
T TIGR00017 2 AMIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRAI 40 (217)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHHH
Confidence 368999999999999999999999999999999988754
No 116
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=98.95 E-value=1.1e-08 Score=85.76 Aligned_cols=107 Identities=20% Similarity=0.141 Sum_probs=64.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh---C--CCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHH---HHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLL---E--VPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIF---ALLS 132 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~---g--~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~---~ll~ 132 (273)
.++..|+|+|+|||||||+++.|+..+ | +.+++.+ -+++.+..+ ..+.++... ..+.
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d-~~r~~l~~~--------------~~~~~~~~~~~~~~~~ 80 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGD-NVRHGLNKD--------------LGFSEEDRKENIRRIG 80 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCh-HHHhhhccc--------------cCCCHHHHHHHHHHHH
Confidence 357899999999999999999999987 2 4566654 344332211 111111111 1111
Q ss_pred HHHHhcccCCcceEEEeCCCCCHHHHHHHHhhC--CCceEEEEccCHHHHHHH
Q 024067 133 KRLEEGYYRGESGFILDGIPRTRIQAEILDQIV--DVDLVINFKSIEDQLVKR 183 (273)
Q Consensus 133 ~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~--~~d~vI~L~~~~e~l~~R 183 (273)
..... ....+..+|+|..-....+...+.... .+..+|+|++|.+++.+|
T Consensus 81 ~~~~~-~~~~G~~VI~d~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~e~~~~R 132 (184)
T TIGR00455 81 EVAKL-FVRNGIIVITSFISPYRADRQMVRELIEKGEFIEVFVDCPLEVCEQR 132 (184)
T ss_pred HHHHH-HHcCCCEEEEecCCCCHHHHHHHHHhCcCCCeEEEEEeCCHHHHHHh
Confidence 11110 012357788897655566666665442 245789999999999988
No 117
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.94 E-value=7.7e-09 Score=88.37 Aligned_cols=124 Identities=17% Similarity=0.169 Sum_probs=68.3
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhC---CCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 024067 60 PRRGVQWVLIGDPGVKKHVYADNLSKLLE---VPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLE 136 (273)
Q Consensus 60 ~~~~~~Ivi~G~pGSGKsT~a~~La~~~g---~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~ 136 (273)
|.++..|.|.|++||||||+++.|+..++ +.+++.|+.+...... ...+........-...+.+.+.+.+.....
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~ 80 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYKDQSHL--EMAERKKTNFDHPDAFDNDLLYEHLKNLKN 80 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccccChhhC--CHHHhcCCCCCCccHhHHHHHHHHHHHHHC
Confidence 46788999999999999999999999885 5677777654311000 000000000000000011111222211111
Q ss_pred hc-------------------ccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCc
Q 024067 137 EG-------------------YYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEA 189 (273)
Q Consensus 137 ~~-------------------~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (273)
.. ......-||+||++.-... .+. ..+|++|+++++.++.+.|+..|..
T Consensus 81 g~~v~~p~yd~~~~~~~~~~~~~~~~~~vIieG~~~~~~~--~~~--~~~d~~I~v~~~~~~~l~R~~~R~~ 148 (207)
T TIGR00235 81 GSPIDVPVYDYVNHTRPKETVHIEPKDVVILEGIMPLFDE--RLR--DLMDLKIFVDTPLDIRLIRRIERDI 148 (207)
T ss_pred CCCEecccceeecCCCCCceEEeCCCCEEEEEehhhhchH--hHH--HhCCEEEEEECChhHHHHHHHHHHH
Confidence 00 0012355788987653221 122 2478999999999999999988753
No 118
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=98.93 E-value=5.8e-10 Score=87.02 Aligned_cols=112 Identities=20% Similarity=0.104 Sum_probs=58.1
Q ss_pred EEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcc-cCCcc
Q 024067 66 WVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGY-YRGES 144 (273)
Q Consensus 66 Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~-~~~~~ 144 (273)
|+|.|+|||||||+|+.|+++++..+. +.............. ...........+....++........ .....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~~~~~~---~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERLGDIIR---DIAPEEDIVDSIDDN---PDWKENKRLDMEFQDELLDSIIQAIRRMNKGR 74 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCHHHH---HHHHHTTSHSSHCCH---HCCCCCCCSCHHHHHHHHHHHHHHHHHHTTTS
T ss_pred CEEECCCCCCHHHHHHHHHHHHCcHHH---HHHHhcCCccccccc---chhhhhhhhhhhhHHHHHHHHHHhhcccccCC
Confidence 789999999999999999999822111 112111110000000 00112222333333333322222110 12357
Q ss_pred eEEEeCCCCCHHHHHHHHhhCCCceE-EEEccCHHHHHHHHhcCCc
Q 024067 145 GFILDGIPRTRIQAEILDQIVDVDLV-INFKSIEDQLVKRNLESEA 189 (273)
Q Consensus 145 g~IlDg~P~~~~qa~~l~~~~~~d~v-I~L~~~~e~l~~Rl~~R~~ 189 (273)
.+|+|+........ ...... |+|+|+++++.+|+..|..
T Consensus 75 ~~iid~~~~~~~~~------~~~~~~~i~L~~~~e~~~~R~~~R~~ 114 (129)
T PF13238_consen 75 NIIIDGILSNLELE------RLFDIKFIFLDCSPEELRKRLKKRGR 114 (129)
T ss_dssp CEEEEESSEEECET------TEEEESSEEEE--HHHHHHHHHCTTT
T ss_pred cEEEecccchhccc------ccceeeEEEEECCHHHHHHHHHhCCC
Confidence 78999875332210 112223 9999999999999999875
No 119
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=98.93 E-value=7.6e-08 Score=86.34 Aligned_cols=149 Identities=13% Similarity=0.077 Sum_probs=81.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccC
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~ 141 (273)
.+..|+|+|++||||||+++.|. ..|+.+++.- |..++..++.. +.+....
T Consensus 5 ~~~~i~i~G~~GsGKtt~~~~l~-~~g~~~~d~~---------------------------~~~L~~~l~~~-~~~~~~~ 55 (288)
T PRK05416 5 PMRLVIVTGLSGAGKSVALRALE-DLGYYCVDNL---------------------------PPSLLPKLVEL-LAQSGGI 55 (288)
T ss_pred CceEEEEECCCCCcHHHHHHHHH-HcCCeEECCc---------------------------CHHHHHHHHHH-HHhcCCC
Confidence 45689999999999999999996 5587776431 11122222211 1111001
Q ss_pred CcceEEEeCCCCCH-----HHHHHHHhhCCCceEEEEccCHHHHHHHHhcCC-cCCCcccccccCCCCCCCCCcHHHHHH
Q 024067 142 GESGFILDGIPRTR-----IQAEILDQIVDVDLVINFKSIEDQLVKRNLESE-AFSPHKEFLRLGGARFSAADAASAWKE 215 (273)
Q Consensus 142 ~~~g~IlDg~P~~~-----~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~-~~~~~~~~y~~~~~~~~~~d~~e~~~~ 215 (273)
..--+++|-.-... .....|...+....+|+|+++.+++.+|+..++ .+| ...+. .+.+
T Consensus 56 ~~~av~iD~r~~~~~~~~~~~~~~L~~~g~~~~iI~L~a~~e~L~~Rl~~~rr~RP------------Ll~~~---~l~e 120 (288)
T PRK05416 56 RKVAVVIDVRSRPFFDDLPEALDELRERGIDVRVLFLDASDEVLIRRYSETRRRHP------------LSGDG---SLLE 120 (288)
T ss_pred CCeEEEEccCchhhHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHhhcccCCC------------ccCCc---cHHH
Confidence 12346777532221 112223222333468999999999999997532 222 11111 1111
Q ss_pred HHHHHHHhhHHHHHHHHhcCcEEEEeCC-CChhHHHHHHHHHHHh
Q 024067 216 KFRIYAEQGKSLEDYYSKQRKLLNFQVA-AAPGETWQGLLSALHL 259 (273)
Q Consensus 216 rl~~y~~~~~~l~~~y~~~~~~~~id~~-~s~~ev~~~I~~~l~~ 259 (273)
.+.. ....+..+|+..+ +.||++ .+++++.++|...+..
T Consensus 121 ~I~~---eR~~l~pl~~~AD--ivIDTs~ls~~el~e~I~~~l~~ 160 (288)
T PRK05416 121 GIEL---ERELLAPLRERAD--LVIDTSELSVHQLRERIRERFGG 160 (288)
T ss_pred HHHH---HHhhhhhHHHhCC--EEEECCCCCHHHHHHHHHHHHhc
Confidence 1221 2222334454444 456765 4899999999998854
No 120
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=98.91 E-value=2.6e-08 Score=84.27 Aligned_cols=30 Identities=23% Similarity=0.235 Sum_probs=27.4
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCee
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHI 92 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~i 92 (273)
.+.|+|.|+-|+||||+|+.||+++|+.++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~~~ 33 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGFKVF 33 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCCcee
Confidence 568999999999999999999999997654
No 121
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=98.90 E-value=4.1e-08 Score=97.73 Aligned_cols=40 Identities=20% Similarity=0.169 Sum_probs=36.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQE 101 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~ 101 (273)
+.++|.|.||+||||||+++.||+++|++|++++.++|..
T Consensus 441 ~~~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~~~~~~ 480 (661)
T PRK11860 441 RVPVICIDGPTASGKGTVAARVAEALGYHYLDSGALYRLT 480 (661)
T ss_pred CcceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHHhhhHH
Confidence 3568999999999999999999999999999999999864
No 122
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=98.88 E-value=3.6e-08 Score=99.80 Aligned_cols=40 Identities=25% Similarity=0.209 Sum_probs=36.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQE 101 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~ 101 (273)
.++.|.|.|||||||||+|+.||++|++.||++|.++|..
T Consensus 33 ~~~~i~idG~~gsGKst~~~~la~~l~~~~~~~g~~yRa~ 72 (863)
T PRK12269 33 GTVIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSFYRAF 72 (863)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHH
Confidence 3458999999999999999999999999999999999864
No 123
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=98.87 E-value=2.2e-07 Score=87.69 Aligned_cols=40 Identities=35% Similarity=0.419 Sum_probs=33.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCee-chhHHHHHHc
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHI-SMGSLVRQEL 102 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~i-s~~dllr~~~ 102 (273)
+|..|+++|+||+||||++..||+++|+.++ ++ |.+++.+
T Consensus 254 ~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~t-D~iR~~l 294 (475)
T PRK12337 254 RPLHVLIGGVSGVGKSVLASALAYRLGITRIVST-DAVREVL 294 (475)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeeh-hHHHHHH
Confidence 6889999999999999999999999999854 55 5666543
No 124
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=98.86 E-value=2.9e-08 Score=95.62 Aligned_cols=100 Identities=12% Similarity=0.046 Sum_probs=75.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhccc
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYY 140 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~ 140 (273)
.++..|+++|+|||||||+|+.+++..|+.+|+.|.+-. .+.....+.+.|..
T Consensus 367 ~~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~lg~------------------------~~~~~~~a~~~L~~--- 419 (526)
T TIGR01663 367 APCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTLGS------------------------TQNCLTACERALDQ--- 419 (526)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHcCCeEECcHHHHH------------------------HHHHHHHHHHHHhC---
Confidence 457789999999999999999999999999999976521 01122334555554
Q ss_pred CCcceEEEeCCCCCHHHHHHHHhh----CCCceEEEEccCHHHHHHHHhcCCc
Q 024067 141 RGESGFILDGIPRTRIQAEILDQI----VDVDLVINFKSIEDQLVKRNLESEA 189 (273)
Q Consensus 141 ~~~~g~IlDg~P~~~~qa~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (273)
+..+|+|..-.+..+...+..+ ..+-.+|+|++|.+++..|...|..
T Consensus 420 --G~sVVIDaTn~~~~~R~~~i~lAk~~gv~v~~i~~~~p~e~~~~Rn~~R~~ 470 (526)
T TIGR01663 420 --GKRCAIDNTNPDAASRAKFLQCARAAGIPCRCFLFNAPLAQAKHNIAFREL 470 (526)
T ss_pred --CCcEEEECCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHhhcc
Confidence 4789999987776666555332 3455789999999999999988864
No 125
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=98.86 E-value=1e-07 Score=85.53 Aligned_cols=179 Identities=15% Similarity=0.141 Sum_probs=90.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCe-echhHHHHHHccCC--C----hHHHHHHHHHH--CCCCCCHH-H-----
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPH-ISMGSLVRQELSPR--S----ALYKQIANAVN--EGKLVPED-V----- 126 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~-is~~dllr~~~~~~--~----~~g~~i~~~l~--~g~~~~~~-~----- 126 (273)
+|+.|+|.|++||||||+|..||++||..+ |+ .|.+++.+..- . .+......... .+.+-+++ .
T Consensus 91 ~p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~-~D~~re~~R~~~~~e~~p~L~~S~Y~a~~~l~~~~~~~~~~l~g~~ 169 (301)
T PRK04220 91 EPIIILIGGASGVGTSTIAFELASRLGIRSVIG-TDSIREVMRKIISKELLPTLHESSYTAWKSLRRPPPPEPPVIYGFE 169 (301)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCEEEe-chHHHHHHHHhcchhhccchhhhhhhhhhcccCCCCCchhhhhhHH
Confidence 578999999999999999999999999985 55 46666443310 0 01000000011 01111221 1
Q ss_pred -----HHHHHHHHHHhcccCCcceEEEeCCCCCHHHHHHHHhhCCCc-eEEEEcc-CHHHHHHHHhcCCcCCCccccccc
Q 024067 127 -----IFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVD-LVINFKS-IEDQLVKRNLESEAFSPHKEFLRL 199 (273)
Q Consensus 127 -----~~~ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d-~vI~L~~-~~e~l~~Rl~~R~~~~~~~~~y~~ 199 (273)
+...+...+.... ..+...|+.|..-.......+.. ..++ +.+++.+ +++...+|+..|..+. .
T Consensus 170 ~~~~~v~~gi~~~I~~~~-~~g~s~IiEGvhl~P~~i~~~~~-~~~~~i~~~l~i~~ee~h~~RF~~R~~~~--~----- 240 (301)
T PRK04220 170 RHVEPVSVGVEAVIERAL-KEGISVIIEGVHIVPGFIKEKYL-ENPNVFMFVLTLSDEEAHKARFYARARVS--R----- 240 (301)
T ss_pred HHHHHHHHHHHHHHHHHH-HhCCcEEEecCCCCHHHHHHhhh-cCCCEEEEEEEECCHHHHHHHHHHHHhhh--C-----
Confidence 1111222222211 13578999997665554332211 1232 3444444 5688999998776432 0
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhc
Q 024067 200 GGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQ 260 (273)
Q Consensus 200 ~~~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~ 260 (273)
+++ +.+-+-+..++...+-+.+--++.+ +-.|| +.+.++..+.+.+.+..+
T Consensus 241 -----r~~---~~y~~~~~~ir~iq~~l~~~a~~~~-ip~I~-n~~i~~s~~~~~~~i~~~ 291 (301)
T PRK04220 241 -----RPA---ERYLKNFEIIREINDYIVEKAKKHG-VPVIE-NISIEETVDKILEIITER 291 (301)
T ss_pred -----Cch---hhHHHHHHHHHHHHHHHHHHHHHhC-CCeec-CccHHHHHHHHHHHHHHH
Confidence 111 1122222222222222333334444 33456 467777777777666554
No 126
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.85 E-value=4.5e-08 Score=83.09 Aligned_cols=105 Identities=14% Similarity=0.156 Sum_probs=60.7
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHh-----CCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCC---HHHHHHHH
Q 024067 60 PRRGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP---EDVIFALL 131 (273)
Q Consensus 60 ~~~~~~Ivi~G~pGSGKsT~a~~La~~~-----g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~---~~~~~~ll 131 (273)
+.+|..|+|+|++||||||+++.|+..+ +..+++.+++- +.+.... + ..+ .+.+..+.
T Consensus 21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~-~~~~~~~------------~-~~~~~~~~~~~~l~ 86 (198)
T PRK03846 21 GHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVR-HGLCSDL------------G-FSDADRKENIRRVG 86 (198)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHH-hhhhhcC------------C-cCcccHHHHHHHHH
Confidence 3578899999999999999999999987 34666655443 2221100 0 011 12222221
Q ss_pred H--HHHHhcccCCcceEEEeCCCC-CHHHHHHHHhhC-CCce-EEEEccCHHHHHHH
Q 024067 132 S--KRLEEGYYRGESGFILDGIPR-TRIQAEILDQIV-DVDL-VINFKSIEDQLVKR 183 (273)
Q Consensus 132 ~--~~l~~~~~~~~~g~IlDg~P~-~~~qa~~l~~~~-~~d~-vI~L~~~~e~l~~R 183 (273)
. ..+.. ...+|+..|.. ...+.+.+.... ...+ +|+|++|.+++.+|
T Consensus 87 ~~a~~~~~-----~G~~VI~~~~~~~~~~R~~~r~~l~~~~~i~V~L~~~~e~~~~R 138 (198)
T PRK03846 87 EVAKLMVD-----AGLVVLTAFISPHRAERQMVRERLGEGEFIEVFVDTPLAICEAR 138 (198)
T ss_pred HHHHHHhh-----CCCEEEEEeCCCCHHHHHHHHHHcccCCEEEEEEcCCHHHHHhc
Confidence 1 11111 12345555654 334455554432 2344 89999999999999
No 127
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.84 E-value=9.4e-08 Score=80.60 Aligned_cols=161 Identities=20% Similarity=0.198 Sum_probs=83.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhC-----CCeechhHHHHHHccCC-ChHHH-HHHHHHHCCCCCCHHHHHHHHHHHH
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLVRQELSPR-SALYK-QIANAVNEGKLVPEDVIFALLSKRL 135 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g-----~~~is~~dllr~~~~~~-~~~g~-~i~~~l~~g~~~~~~~~~~ll~~~l 135 (273)
++.|+++|+|||||||.|+.|++.+. +.+++. |.++--.... -+..+ ..++.+. +-...++..++
T Consensus 1 mpLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~k-dy~~~i~~DEslpi~ke~yres~~-------ks~~rlldSal 72 (261)
T COG4088 1 MPLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEK-DYLRGILWDESLPILKEVYRESFL-------KSVERLLDSAL 72 (261)
T ss_pred CceEEEecCCCCCchHHHHHHHHHHHHhhhhccccch-hhhhheecccccchHHHHHHHHHH-------HHHHHHHHHHh
Confidence 46789999999999999999999883 233332 1222111111 11111 1111111 11223444444
Q ss_pred HhcccCCcceEEEeCCC--CC-HHHHHHHH-hhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHH
Q 024067 136 EEGYYRGESGFILDGIP--RT-RIQAEILD-QIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAAS 211 (273)
Q Consensus 136 ~~~~~~~~~g~IlDg~P--~~-~~qa~~l~-~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e 211 (273)
. +.-+|+|..- .+ +.|..... ....+-.||++.||.+++++|-.+|.. + -.+|
T Consensus 73 k------n~~VIvDdtNYyksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN~erge-p----------------ip~E 129 (261)
T COG4088 73 K------NYLVIVDDTNYYKSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRNRERGE-P----------------IPEE 129 (261)
T ss_pred c------ceEEEEecccHHHHHHHHHHHHHHhcCCceEEEEEccCHHHHHHhhccCCC-C----------------CCHH
Confidence 3 3557888632 22 23332221 224567899999999999999866653 1 0135
Q ss_pred HHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHH
Q 024067 212 AWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALH 258 (273)
Q Consensus 212 ~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~ 258 (273)
.+++.+..|.+-... ++=..-++.||......++...|...+.
T Consensus 130 vl~qly~RfEePn~~----~rWDspll~id~~d~~t~~IDfiesvl~ 172 (261)
T COG4088 130 VLRQLYDRFEEPNPD----RRWDSPLLVIDDSDVSTEVIDFIESVLR 172 (261)
T ss_pred HHHHHHHhhcCCCCC----ccccCceEEEecccccccchhHHHHHHH
Confidence 666656665432210 1101135667644444455555554444
No 128
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.83 E-value=3.8e-08 Score=97.59 Aligned_cols=160 Identities=12% Similarity=0.065 Sum_probs=89.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh-----CCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHH----HHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV----IFALL 131 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~-----g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~----~~~ll 131 (273)
.++..|+++|.|||||||+|+.|++++ ++.+|+.|+ +|+.+..+ ....++. +..+.
T Consensus 458 ~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~-~r~~l~~~--------------~~~~~~~r~~~~~~l~ 522 (632)
T PRK05506 458 QKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDN-VRHGLNRD--------------LGFSDADRVENIRRVA 522 (632)
T ss_pred CCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChh-hhhccCCC--------------CCCCHHHHHHHHHHHH
Confidence 468899999999999999999999997 346777754 55443321 1122221 11111
Q ss_pred HHHHHhcccCCcceEEEeCCCCCHHHHHHHHhhC--CCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCc
Q 024067 132 SKRLEEGYYRGESGFILDGIPRTRIQAEILDQIV--DVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADA 209 (273)
Q Consensus 132 ~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~--~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~ 209 (273)
..+... ...+..+|+|..-....+.+.+.... .+..+|+|+++.+++.+|. .|.. |.. ..
T Consensus 523 ~~a~~~--~~~G~~Vivda~~~~~~~R~~~r~l~~~~~~~~v~L~~~~e~~~~R~-~r~L-------~~~--------~~ 584 (632)
T PRK05506 523 EVARLM--ADAGLIVLVSFISPFREERELARALHGEGEFVEVFVDTPLEVCEARD-PKGL-------YAK--------AR 584 (632)
T ss_pred HHHHHH--HhCCCEEEEECCCCCHHHHHHHHHhcccCCeEEEEECCCHHHHHhhC-Ccch-------hhh--------cc
Confidence 111110 11245678887543444555554432 2347999999999999993 2221 100 00
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeC-CCChhHHHHHHHHHHHhc
Q 024067 210 ASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQV-AAAPGETWQGLLSALHLQ 260 (273)
Q Consensus 210 ~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~-~~s~~ev~~~I~~~l~~~ 260 (273)
...+..+.... ..|+....--+.||+ ..+++++.++|...|..+
T Consensus 585 ----~~~l~~l~~~r---~~y~~P~~a~~~Id~~~~s~~e~v~~Ii~~l~~~ 629 (632)
T PRK05506 585 ----AGEIKNFTGID---SPYEAPENPELRLDTTGRSPEELAEQVLELLRRR 629 (632)
T ss_pred ----ccccccccccc---cCCCCCCCCeEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 00111111111 113321112366776 568999999999998763
No 129
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=98.80 E-value=1.7e-08 Score=84.95 Aligned_cols=36 Identities=17% Similarity=0.146 Sum_probs=32.4
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh-CCCeechhHHHHH
Q 024067 65 QWVLIGDPGVKKHVYADNLSKLL-EVPHISMGSLVRQ 100 (273)
Q Consensus 65 ~Ivi~G~pGSGKsT~a~~La~~~-g~~~is~~dllr~ 100 (273)
+|.|.|+|||||||+|+.|++.+ ++.+|++|++...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~~ 37 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFKP 37 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeEEccccccCC
Confidence 37799999999999999999999 7999999988763
No 130
>PRK07667 uridine kinase; Provisional
Probab=98.79 E-value=2.9e-08 Score=84.02 Aligned_cols=122 Identities=7% Similarity=0.003 Sum_probs=66.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC-----CCeechhHHHHHHcc----CCChH-------------HHHHHHHHHCC
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLVRQELS----PRSAL-------------YKQIANAVNEG 119 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g-----~~~is~~dllr~~~~----~~~~~-------------g~~i~~~l~~g 119 (273)
...+|.|.|+|||||||+|+.|++.++ +..++.|+++..... ...+. .+.+-..+.++
T Consensus 16 ~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~~~v~~~L~~~ 95 (193)
T PRK07667 16 NRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVERNKRYHTGFEEWYEYYYLQWDIEWLRQKFFRKLQNE 95 (193)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccchhhhHHhcCCCchhhhhhhhhhHHHHHHHHHHhhcCC
Confidence 447899999999999999999999873 458899987754321 11100 00110111122
Q ss_pred CCCCHHHHHHHHHHHHHhc-ccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCC
Q 024067 120 KLVPEDVIFALLSKRLEEG-YYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESE 188 (273)
Q Consensus 120 ~~~~~~~~~~ll~~~l~~~-~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (273)
+.+.--.+........... ......-+|+||.... ... +. ..+|.+|+++||+++.++|+..|.
T Consensus 96 ~~i~~P~~d~~~~~~~~~~~~~~~~~vvIvEG~~l~--~~~-~~--~~~d~~v~V~~~~~~~~~R~~~r~ 160 (193)
T PRK07667 96 TKLTLPFYHDETDTCEMKKVQIPIVGVIVIEGVFLQ--RKE-WR--DFFHYMVYLDCPRETRFLRESEET 160 (193)
T ss_pred CeEEEeeeccccccccccceecCCCCEEEEEehhhh--hhh-HH--hhceEEEEEECCHHHHHHHHhccc
Confidence 1110000000000000000 0011355778886421 111 21 246899999999999999998864
No 131
>PRK06696 uridine kinase; Validated
Probab=98.79 E-value=4.3e-08 Score=84.76 Aligned_cols=39 Identities=21% Similarity=0.313 Sum_probs=32.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh---CCC--eechhHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLL---EVP--HISMGSLVR 99 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~---g~~--~is~~dllr 99 (273)
.++.+|.|.|++||||||+|+.|++.+ |.+ ++++|++..
T Consensus 20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~ 63 (223)
T PRK06696 20 TRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHN 63 (223)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccC
Confidence 468899999999999999999999999 544 455787764
No 132
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=98.77 E-value=9.4e-08 Score=79.51 Aligned_cols=157 Identities=18% Similarity=0.198 Sum_probs=83.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCC--CeechhHHHHHHccCCChHHHHHHHHHHCCCCC------C--HH---HHHH
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEV--PHISMGSLVRQELSPRSALYKQIANAVNEGKLV------P--ED---VIFA 129 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~--~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~------~--~~---~~~~ 129 (273)
+.+|+|-|+|-|||||+|+.|.+.+.- .|+++|.++.. +.++. ...+.-+ + .. .+..
T Consensus 1 g~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~-~~~~~---------~~~~~g~~~~~~~~~~~~~~~~~~~ 70 (174)
T PF07931_consen 1 GQIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDM-MPPGR---------YRPGDGLEPAGDRPDGGPLFRRLYA 70 (174)
T ss_dssp --EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHH-S-GGG---------GTSTTSEEEETTSEEE-HHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhh-cCccc---------ccCCccccccccCCchhHHHHHHHH
Confidence 357999999999999999999999964 57888887763 22110 0011000 0 01 1122
Q ss_pred HHHHHHHhcccCCcceEEEeCCCCCHHH-HHHHHh-h-CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCC
Q 024067 130 LLSKRLEEGYYRGESGFILDGIPRTRIQ-AEILDQ-I-VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSA 206 (273)
Q Consensus 130 ll~~~l~~~~~~~~~g~IlDg~P~~~~q-a~~l~~-~-~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~ 206 (273)
.+...+... ...+.++|+|....+... .+.+.. + ..+-++|-+.||.+++.+|-..|....
T Consensus 71 ~~~~~iaa~-a~aG~~VIvD~v~~~~~~l~d~l~~~L~~~~vl~VgV~Cpleil~~RE~~RgDR~--------------- 134 (174)
T PF07931_consen 71 AMHAAIAAM-ARAGNNVIVDDVFLGPRWLQDCLRRLLAGLPVLFVGVRCPLEILERRERARGDRP--------------- 134 (174)
T ss_dssp HHHHHHHHH-HHTT-EEEEEE--TTTHHHHHHHHHHHTTS-EEEEEEE--HHHHHHHHHHHTSSS---------------
T ss_pred HHHHHHHHH-HhCCCCEEEecCccCcHHHHHHHHHHhCCCceEEEEEECCHHHHHHHHHhcCCcc---------------
Confidence 222222221 134688999987655443 455533 3 344579999999999999988876321
Q ss_pred CCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCC-ChhHHHHHHHHHHH
Q 024067 207 ADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAA-APGETWQGLLSALH 258 (273)
Q Consensus 207 ~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~-s~~ev~~~I~~~l~ 258 (273)
.. ....+ |..-.... -|. ++||++. +|+|..+.|++.|+
T Consensus 135 ~G---~a~~q---~~~Vh~~~--~YD-----leVDTs~~sp~ecA~~I~~~~~ 174 (174)
T PF07931_consen 135 IG---LAAWQ---AEHVHEGG--RYD-----LEVDTSATSPEECAREILARLE 174 (174)
T ss_dssp TT---HHHHH---TTGGGTT-----S-----EEEETTSS-HHHHHHHHHTT--
T ss_pred hH---HHHHH---HhhcccCC--CCC-----EEEECCCCCHHHHHHHHHHHhC
Confidence 11 11111 11000111 122 6789885 89999999988763
No 133
>PLN02772 guanylate kinase
Probab=98.75 E-value=2.1e-07 Score=86.18 Aligned_cols=172 Identities=13% Similarity=0.089 Sum_probs=97.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCC-CeechhHHHHHHccC---CChH----HHHHHHHHHCCCCCCHH--------
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEV-PHISMGSLVRQELSP---RSAL----YKQIANAVNEGKLVPED-------- 125 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~-~~is~~dllr~~~~~---~~~~----g~~i~~~l~~g~~~~~~-------- 125 (273)
..+.|+|+||+|+||+|+.++|.+.+.. ..++....-|..-.. +..+ -+.+...+.+|..+...
T Consensus 134 ~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshTTR~pR~gE~dG~dY~Fvs~eeFe~~i~~g~FlE~~e~~Gn~YG 213 (398)
T PLN02772 134 AEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREMEKDGVHYHFTERSVMEKEIKDGKFLEFASVHGNLYG 213 (398)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhhhccccccccccccCCCCcccccCCceEeeCCHHHHHHHHHhCccceeeeecCcccc
Confidence 5568999999999999999999987632 111221112211110 0000 13455555555544321
Q ss_pred HHHHHHHHHHHhcccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCC
Q 024067 126 VIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFS 205 (273)
Q Consensus 126 ~~~~ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~ 205 (273)
+-...+...+.+ ++.+|+|--|....+.... ...+-.++++..+.+++.+|+..|..
T Consensus 214 Tsk~~V~~vl~~-----Gk~vILdLD~qGar~Lr~~--~l~~v~IFI~PPSlEeLe~RL~~RGt---------------- 270 (398)
T PLN02772 214 TSIEAVEVVTDS-----GKRCILDIDVQGARSVRAS--SLEAIFIFICPPSMEELEKRLRARGT---------------- 270 (398)
T ss_pred ccHHHHHHHHHh-----CCcEEEeCCHHHHHHHHHh--cCCeEEEEEeCCCHHHHHHHHHhcCC----------------
Confidence 123344444444 4678888665554443322 12332344444458999999998873
Q ss_pred CCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhcCC
Q 024067 206 AADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQHM 262 (273)
Q Consensus 206 ~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~~~ 262 (273)
++++.+++|++.+....... . |...-..+.+| .++++.+++|.++|.....
T Consensus 271 --eseE~I~kRL~~A~~Ei~~~-~-~~~~fD~vIvN--DdLe~A~~~L~~iL~~~~~ 321 (398)
T PLN02772 271 --ETEEQIQKRLRNAEAELEQG-K-SSGIFDHILYN--DNLEECYKNLKKLLGLDGL 321 (398)
T ss_pred --CCHHHHHHHHHHHHHHHhhc-c-ccCCCCEEEEC--CCHHHHHHHHHHHHhhcCc
Confidence 24678999999886543210 0 11111123333 4899999999999976654
No 134
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=98.73 E-value=1.7e-07 Score=76.04 Aligned_cols=106 Identities=20% Similarity=0.103 Sum_probs=61.0
Q ss_pred EEEEcCCCCChhHHHHHHHHHh---CC--CeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHH--HHHHHhc
Q 024067 66 WVLIGDPGVKKHVYADNLSKLL---EV--PHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALL--SKRLEEG 138 (273)
Q Consensus 66 Ivi~G~pGSGKsT~a~~La~~~---g~--~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll--~~~l~~~ 138 (273)
|+|+|+|||||||+++.|++.+ +. .+++. |-+++.+.....+.. . -..+.+..+. ...+..
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~-d~~r~~l~~~~~~~~--------~--~~~~~~~~~~~~a~~l~~- 69 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDG-DNVRHGLNKDLGFSR--------E--DREENIRRIAEVAKLLAD- 69 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcC-HHHHHhhhhccCCCc--------c--hHHHHHHHHHHHHHHHHh-
Confidence 6899999999999999999998 54 44554 334433221100000 0 0011111111 111221
Q ss_pred ccCCcceEEEeCCCCCHHHHHHHHhhC--CCceEEEEccCHHHHHHHHhc
Q 024067 139 YYRGESGFILDGIPRTRIQAEILDQIV--DVDLVINFKSIEDQLVKRNLE 186 (273)
Q Consensus 139 ~~~~~~g~IlDg~P~~~~qa~~l~~~~--~~d~vI~L~~~~e~l~~Rl~~ 186 (273)
.+..+|+|..-....+...+.... .+..+|+|++|.+++.+|-..
T Consensus 70 ---~G~~VIid~~~~~~~~R~~~~~l~~~~~~~~i~l~~~~e~~~~R~~~ 116 (149)
T cd02027 70 ---AGLIVIAAFISPYREDREAARKIIGGGDFLEVFVDTPLEVCEQRDPK 116 (149)
T ss_pred ---CCCEEEEccCCCCHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhCch
Confidence 246688887655555555554443 455799999999999988543
No 135
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=98.70 E-value=6e-08 Score=81.24 Aligned_cols=164 Identities=16% Similarity=0.135 Sum_probs=91.3
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCe-echhHHHHHHcc---CCCh----HHHHHHHHHHCCCCCCHH--------H
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPH-ISMGSLVRQELS---PRSA----LYKQIANAVNEGKLVPED--------V 126 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~-is~~dllr~~~~---~~~~----~g~~i~~~l~~g~~~~~~--------~ 126 (273)
+..|+|+||+||||+|++++|.+.++-.+ ..+..-.|.--. .+.. ..+.+..++..|+.+... +
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~E~~g~~y~fvs~~~f~~~~~~~~fie~~~~~g~~YGt 81 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPGEVDGVDYHFVSKEEFERMIKAGEFIEYGEYDGNYYGT 81 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTTS-TTTSEEE--HHHHHHHHHTTHEEEEEEETTEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCcccccCCcceEEEeechhhhhhccccEEEEeeecchhhhh
Confidence 56789999999999999999999875321 111011111000 0111 113445555555433210 1
Q ss_pred HHHHHHHHHHhcccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccC-HHHHHHHHhcCCcCCCcccccccCCCCCC
Q 024067 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSI-EDQLVKRNLESEAFSPHKEFLRLGGARFS 205 (273)
Q Consensus 127 ~~~ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~-~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~ 205 (273)
...-+...+.. +..+|+|.-|... ..|.....--.+||+.++ .+.+.+|+..|.
T Consensus 82 ~~~~i~~~~~~-----gk~~il~~~~~g~---~~L~~~~~~~~~IfI~~~s~~~l~~~l~~r~----------------- 136 (183)
T PF00625_consen 82 SKSAIDKVLEE-----GKHCILDVDPEGV---KQLKKAGFNPIVIFIKPPSPEVLKRRLRRRG----------------- 136 (183)
T ss_dssp EHHHHHHHHHT-----TTEEEEEETHHHH---HHHHHCTTTEEEEEEEESSHHHHHHHHHTTT-----------------
T ss_pred ccchhhHhhhc-----CCcEEEEccHHHH---HHHHhcccCceEEEEEccchHHHHHHHhccc-----------------
Confidence 12333444444 3668887654433 334333222257888765 677877776654
Q ss_pred CCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHh
Q 024067 206 AADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHL 259 (273)
Q Consensus 206 ~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~ 259 (273)
+++.+.+.+|+..+..... ++.+.+ ..|. +.++++++++|.+.|..
T Consensus 137 -~~~~~~i~~r~~~~~~~~~----~~~~fd--~vi~-n~~le~~~~~l~~ii~~ 182 (183)
T PF00625_consen 137 -DESEEEIEERLERAEKEFE----HYNEFD--YVIV-NDDLEEAVKELKEIIEQ 182 (183)
T ss_dssp -HCHHHHHHHHHHHHHHHHG----GGGGSS--EEEE-CSSHHHHHHHHHHHHHH
T ss_pred -cccHHHHHHHHHHHHHHHh----HhhcCC--EEEE-CcCHHHHHHHHHHHHHh
Confidence 2345677888777654332 233333 2334 35899999999999875
No 136
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=98.70 E-value=2.4e-07 Score=84.83 Aligned_cols=123 Identities=17% Similarity=0.092 Sum_probs=70.2
Q ss_pred EEEEcCCCCChhHHHHHHHHHhC------CCeechhHHHHHHcc------CCChHHHHHH----HHH-------HCCCCC
Q 024067 66 WVLIGDPGVKKHVYADNLSKLLE------VPHISMGSLVRQELS------PRSALYKQIA----NAV-------NEGKLV 122 (273)
Q Consensus 66 Ivi~G~pGSGKsT~a~~La~~~g------~~~is~~dllr~~~~------~~~~~g~~i~----~~l-------~~g~~~ 122 (273)
.+|+|+|||||||+++.|++.+. +.+++.||++..... +..+.++..+ .++ .+|...
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~~~~~~~~~~~~~~~~k~~R~~i~~~le~~v~a~~~g~~~ 81 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPEAAFELDQSREIPSQWKQFRQELLKYLEHFLVAVINGSEL 81 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccccchhhhcCCCcHHHHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 58999999999999999998875 348999998842221 1122333222 211 223222
Q ss_pred CH------HHHH---HHHH----------------HHHHhcccCCcceEEEeCCCCCHHHHHHHHh----hCCCceEEEE
Q 024067 123 PE------DVIF---ALLS----------------KRLEEGYYRGESGFILDGIPRTRIQAEILDQ----IVDVDLVINF 173 (273)
Q Consensus 123 ~~------~~~~---~ll~----------------~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~----~~~~d~vI~L 173 (273)
.. .+.. ..+. .++.........-+|+|+......++..+.. ...+..+|++
T Consensus 82 ~~~~~~~~~~~~~nv~~L~~~g~vv~L~as~e~~~~rLi~~~LsrpllvilDd~fy~ks~Ryel~~LAr~~~~~~~~V~l 161 (340)
T TIGR03575 82 SAPPGKTEGMWEDFVDCLKEQGLIISSGASEAQGCHSLTKPAVSRPLCLVLDDNFYYQSMRYEVYQLARKYSLGFCQLFL 161 (340)
T ss_pred cCCcccchhhhHHHHHHHHhCCeEEEcCCcHHHHHHHHhHHHHhCCCCceecCCCCCHHHHHHHHHHHHHhCCCEEEEEE
Confidence 11 1111 1110 1111100001123788886655555544432 2345589999
Q ss_pred ccCHHHHHHHHhcCC
Q 024067 174 KSIEDQLVKRNLESE 188 (273)
Q Consensus 174 ~~~~e~l~~Rl~~R~ 188 (273)
++|.+++++|..+|.
T Consensus 162 d~ple~~l~RN~~R~ 176 (340)
T TIGR03575 162 DCPVESCLLRNKQRP 176 (340)
T ss_pred eCCHHHHHHHHhcCC
Confidence 999999999999885
No 137
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.70 E-value=1.9e-07 Score=78.96 Aligned_cols=35 Identities=26% Similarity=0.275 Sum_probs=29.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh---CCCeechhHHHH
Q 024067 65 QWVLIGDPGVKKHVYADNLSKLL---EVPHISMGSLVR 99 (273)
Q Consensus 65 ~Ivi~G~pGSGKsT~a~~La~~~---g~~~is~~dllr 99 (273)
.|.|.|++||||||+++.|+..+ ++.+++.|++..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~ 38 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYK 38 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEeccccc
Confidence 37899999999999999999987 467888887663
No 138
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=98.64 E-value=4.8e-07 Score=80.50 Aligned_cols=156 Identities=19% Similarity=0.130 Sum_probs=73.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh-----CCCeechhHHHHHHcc-CCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMGSLVRQELS-PRSALYKQIANAVNEGKLVPEDVIFALLSKRLE 136 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~-----g~~~is~~dllr~~~~-~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~ 136 (273)
|+.|+|+|.|||||||+|+.|++.+ .+.+++.+++...... ..+...+.++. .+...+...+.
T Consensus 1 MpLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~-----------~l~s~v~r~ls 69 (270)
T PF08433_consen 1 MPLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARG-----------SLKSAVERALS 69 (270)
T ss_dssp E-EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHH-----------HHHHHHHHHHT
T ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHH-----------HHHHHHHHhhc
Confidence 3589999999999999999999985 3456765444411111 01111111111 12222333332
Q ss_pred hcccCCcceEEEeCCCCCHHHHH---HHHh-hCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHH
Q 024067 137 EGYYRGESGFILDGIPRTRIQAE---ILDQ-IVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASA 212 (273)
Q Consensus 137 ~~~~~~~~g~IlDg~P~~~~qa~---~l~~-~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~ 212 (273)
...-+|+|+--.-..... .+.. ......+|+++|+.+.+++|-..|.... .-.++.
T Consensus 70 -----~~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~~~~---------------~~~~e~ 129 (270)
T PF08433_consen 70 -----KDTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRPEPE---------------RYPEET 129 (270)
T ss_dssp -----T-SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT-S-----------------S-HHH
T ss_pred -----cCeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccCCCC---------------CCCHHH
Confidence 246789998543333332 2222 2445679999999999999998887421 123456
Q ss_pred HHHHHHHHHHhhHHHHHHHHhcCcEEEEeC-CC--ChhHHHHHH
Q 024067 213 WKEKFRIYAEQGKSLEDYYSKQRKLLNFQV-AA--APGETWQGL 253 (273)
Q Consensus 213 ~~~rl~~y~~~~~~l~~~y~~~~~~~~id~-~~--s~~ev~~~I 253 (273)
+.+....|+.-.. -.+=...++.|+. +. +.+++|..|
T Consensus 130 i~~m~~RfE~P~~----~nrWD~plf~i~~~~~~~~~~~I~~~l 169 (270)
T PF08433_consen 130 IDDMIQRFEEPDP----KNRWDSPLFTIDSSDEELPLEEIWNAL 169 (270)
T ss_dssp HHHHHHH---TTS----S-GGGS-SEEEE-TTS---HHHHHHHH
T ss_pred HHHHHHHhcCCCC----CCCccCCeEEEecCCCCCCHHHHHHHH
Confidence 6666666653221 0110123677773 22 345666666
No 139
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=98.64 E-value=1.2e-07 Score=80.49 Aligned_cols=117 Identities=14% Similarity=0.173 Sum_probs=64.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh---CCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCC-------HHHHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLL---EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP-------EDVIFAL 130 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~---g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~-------~~~~~~l 130 (273)
.+|..+++.|+|||||||++..+...+ ++.+|+.|++ +...+. +..+... ...... ..+...+
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~-r~~~p~----~~~~~~~--~~~~~~~~~~~~a~~~~~~~ 85 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEF-RQFHPD----YDELLKA--DPDEASELTQKEASRLAEKL 85 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGG-GGGSTT----HHHHHHH--HCCCTHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHH-HHhccc----hhhhhhh--hhhhhHHHHHHHHHHHHHHH
Confidence 578899999999999999999999987 6888998765 333321 1111111 000000 1123344
Q ss_pred HHHHHHhcccCCcceEEEeCCCCCHHHHH-HHHhh---CCCceEEEEccCHHHHHHHHhcCCc
Q 024067 131 LSKRLEEGYYRGESGFILDGIPRTRIQAE-ILDQI---VDVDLVINFKSIEDQLVKRNLESEA 189 (273)
Q Consensus 131 l~~~l~~~~~~~~~g~IlDg~P~~~~qa~-~l~~~---~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (273)
+...+.. ...+|+|+..++..... .++.+ +---.++++.++++..+.|...|..
T Consensus 86 ~~~a~~~-----~~nii~E~tl~~~~~~~~~~~~~k~~GY~v~l~~v~~~~e~s~~rv~~R~~ 143 (199)
T PF06414_consen 86 IEYAIEN-----RYNIIFEGTLSNPSKLRKLIREAKAAGYKVELYYVAVPPELSIERVRQRYE 143 (199)
T ss_dssp HHHHHHC-----T--EEEE--TTSSHHHHHHHHHHHCTT-EEEEEEE---HHHHHHHHHHHHH
T ss_pred HHHHHHc-----CCCEEEecCCCChhHHHHHHHHHHcCCceEEEEEEECCHHHHHHHHHHHHH
Confidence 4444443 47899999877655544 33333 2223578888999999999988753
No 140
>PHA03132 thymidine kinase; Provisional
Probab=98.62 E-value=1e-06 Score=85.44 Aligned_cols=125 Identities=16% Similarity=0.164 Sum_probs=71.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHH--HHHccCCChHHHHHHHHHHCCC---CCCHHHHH--------
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLV--RQELSPRSALYKQIANAVNEGK---LVPEDVIF-------- 128 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dll--r~~~~~~~~~g~~i~~~l~~g~---~~~~~~~~-------- 128 (273)
+++.|+|.|..||||||+++.|++.+|..++-+.+=. +... .+..++.|.+.+.++. .-+...+.
T Consensus 256 ~~~fIv~EGidGsGKTTlik~L~e~lg~~Vi~t~EP~~~W~~v--y~n~l~~I~~~~~r~~~g~~s~~~ella~Ql~FA~ 333 (580)
T PHA03132 256 PACFLFLEGVMGVGKTTLLNHMRGILGDNVLVFPEPMRYWTEV--YSNCLKEIYKLVKPGKHGKTSTSAKLLACQMKFAT 333 (580)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHhCCceEEEeCCCCchhhc--cccHHHHHHHHHhcccccCCCHHHHHHHHHHHHhh
Confidence 4789999999999999999999999854443221100 0000 0245667777665432 21111111
Q ss_pred --HHHHHHHHh------c---ccCCcceEEEeCCCCCH-H-H---------------HHHHHhh--CCCceEEEEccCHH
Q 024067 129 --ALLSKRLEE------G---YYRGESGFILDGIPRTR-I-Q---------------AEILDQI--VDVDLVINFKSIED 178 (273)
Q Consensus 129 --~ll~~~l~~------~---~~~~~~g~IlDg~P~~~-~-q---------------a~~l~~~--~~~d~vI~L~~~~e 178 (273)
..+..++.. . ....+..+|.|.++.+. . + ...+..+ ..||++|+|+++.+
T Consensus 334 Pfl~~adR~~~~~~~~~~i~p~l~~g~iVI~DRyi~Ss~avF~~~~y~~G~ls~~e~~~lL~~~~~~~PDLiIyLdv~pe 413 (580)
T PHA03132 334 PFRALATRTRRLVQPESVRRPVAPLDNWVLFDRHLLSATVVFPLMHLRNGMLSFSHFIQLLSTFRAHEGDVIVLLKLNSE 413 (580)
T ss_pred HHHHHHHHHHHHHhhhhhccccccCCCEEEEecCccccHHHHHHhccccccCCHHHHHHHHHHhcccCCCEEEEEeCCHH
Confidence 011111111 0 11234567889876432 1 1 1112222 25899999999999
Q ss_pred HHHHHHhcCC
Q 024067 179 QLVKRNLESE 188 (273)
Q Consensus 179 ~l~~Rl~~R~ 188 (273)
++++|+.+|+
T Consensus 414 ~alkRIkkRg 423 (580)
T PHA03132 414 ENLRRVKKRG 423 (580)
T ss_pred HHHHHHHhcC
Confidence 9999998886
No 141
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=98.62 E-value=1.7e-06 Score=76.83 Aligned_cols=147 Identities=12% Similarity=0.089 Sum_probs=82.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCCc
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE 143 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~~ 143 (273)
..|+|+|.+||||||..+.| +.+|+.+|+- +|..++-.++............
T Consensus 2 ~~vIiTGlSGaGKs~Al~~l-ED~Gy~cvDN---------------------------lP~~Ll~~l~~~~~~~~~~~~~ 53 (284)
T PF03668_consen 2 ELVIITGLSGAGKSTALRAL-EDLGYYCVDN---------------------------LPPSLLPQLIELLAQSNSKIEK 53 (284)
T ss_pred eEEEEeCCCcCCHHHHHHHH-HhcCeeEEcC---------------------------CcHHHHHHHHHHHHhcCCCCce
Confidence 46889999999999988777 6789888752 2344444444332211110112
Q ss_pred ceEEEeCCCCC----HHH-HHHHHhhCCCceEEEEccCHHHHHHHHhc-CCcCCCcccccccCCCCCCCCC-cHHHHHHH
Q 024067 144 SGFILDGIPRT----RIQ-AEILDQIVDVDLVINFKSIEDQLVKRNLE-SEAFSPHKEFLRLGGARFSAAD-AASAWKEK 216 (273)
Q Consensus 144 ~g~IlDg~P~~----~~q-a~~l~~~~~~d~vI~L~~~~e~l~~Rl~~-R~~~~~~~~~y~~~~~~~~~~d-~~e~~~~r 216 (273)
--+++|--... ..+ ...+......-.+|||+|+++++++|... |+.+|. ..+. ..+.
T Consensus 54 ~Ai~iD~R~~~~~~~~~~~~~~l~~~~~~~~ilFLdA~d~~LirRy~eTRR~HPL------------~~~~~~le~---- 117 (284)
T PF03668_consen 54 VAIVIDIRSREFFEDLFEALDELRKKGIDVRILFLDASDEVLIRRYSETRRRHPL------------SSDGSLLEA---- 117 (284)
T ss_pred EEEEEeCCChHHHHHHHHHHHHHHhcCCceEEEEEECChHHHHHHHHhccCCCCC------------CCCCCcHHH----
Confidence 33566742221 111 11222222233699999999999999964 444441 1111 1222
Q ss_pred HHHHHHhhHHHHHHHHhcCcEEEEeCCC-ChhHHHHHHHHHHHh
Q 024067 217 FRIYAEQGKSLEDYYSKQRKLLNFQVAA-APGETWQGLLSALHL 259 (273)
Q Consensus 217 l~~y~~~~~~l~~~y~~~~~~~~id~~~-s~~ev~~~I~~~l~~ 259 (273)
++.-++...|+.+ ..+ +.||++. ++.++-+.|...+..
T Consensus 118 I~~Er~~L~~lr~---~Ad--~vIDTs~l~~~~Lr~~i~~~~~~ 156 (284)
T PF03668_consen 118 IEKERELLEPLRE---RAD--LVIDTSNLSVHQLRERIRERFGG 156 (284)
T ss_pred HHHHHHHHHHHHH---hCC--EEEECCCCCHHHHHHHHHHHhcc
Confidence 3332333344432 222 5678765 899999988888764
No 142
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=98.61 E-value=2.2e-07 Score=75.81 Aligned_cols=108 Identities=21% Similarity=0.166 Sum_probs=58.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh-----CCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHH--HHHHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIF--ALLSKR 134 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~-----g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~--~ll~~~ 134 (273)
+|..|.|+|.|||||||+|+.|.+++ .+.+++. |.+|+.+..+-.+..+=+ .+.+. ..+...
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDg-D~lR~~l~~dl~fs~~dR----------~e~~rr~~~~A~l 69 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDG-DNLRHGLNADLGFSKEDR----------EENIRRIAEVAKL 69 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEH-HHHCTTTTTT--SSHHHH----------HHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecC-cchhhccCCCCCCCHHHH----------HHHHHHHHHHHHH
Confidence 47789999999999999999999998 3456665 455554433211100000 01111 111222
Q ss_pred HHhcccCCcceEEEeCCCCCHHHHHHHHhhCC--CceEEEEccCHHHHHHHH
Q 024067 135 LEEGYYRGESGFILDGIPRTRIQAEILDQIVD--VDLVINFKSIEDQLVKRN 184 (273)
Q Consensus 135 l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~--~d~vI~L~~~~e~l~~Rl 184 (273)
+.. .+..+|++..--.....+....... ..+-||++||.+++.+|=
T Consensus 70 l~~----~G~ivIva~isp~~~~R~~~R~~~~~~~f~eVyv~~~~e~~~~RD 117 (156)
T PF01583_consen 70 LAD----QGIIVIVAFISPYREDREWARELIPNERFIEVYVDCPLEVCRKRD 117 (156)
T ss_dssp HHH----TTSEEEEE----SHHHHHHHHHHHHTTEEEEEEEES-HHHHHHHT
T ss_pred HHh----CCCeEEEeeccCchHHHHHHHHhCCcCceEEEEeCCCHHHHHHhC
Confidence 222 2355677654333333333333322 458999999999999984
No 143
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=98.57 E-value=1.4e-07 Score=66.33 Aligned_cols=23 Identities=26% Similarity=0.357 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh
Q 024067 65 QWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 65 ~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.|+|+|+|||||||+++.|++.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 37889999999999999999985
No 144
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.52 E-value=6.5e-07 Score=77.72 Aligned_cols=28 Identities=32% Similarity=0.442 Sum_probs=25.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE 88 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g 88 (273)
.++.+|.|.|++||||||+++.|+..+.
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~ 58 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQ 58 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4678999999999999999999999874
No 145
>COG4639 Predicted kinase [General function prediction only]
Probab=98.52 E-value=2.3e-06 Score=69.15 Aligned_cols=111 Identities=20% Similarity=0.168 Sum_probs=69.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCCc
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE 143 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~~ 143 (273)
..++++|+|||||||.++..- .....++.+++=... |+...+...++ .++.+.+.+.+.+++.- +.+
T Consensus 3 ~LvvL~G~~~sGKsT~ak~n~--~~~~~lsld~~r~~l-------g~~~~~e~sqk---~~~~~~~~l~~~l~qrl-~~G 69 (168)
T COG4639 3 ILVVLRGASGSGKSTFAKENF--LQNYVLSLDDLRLLL-------GVSASKENSQK---NDELVWDILYKQLEQRL-RRG 69 (168)
T ss_pred eEEEEecCCCCchhHHHHHhC--CCcceecHHHHHHHh-------hhchhhhhccc---cHHHHHHHHHHHHHHHH-HcC
Confidence 578899999999999998642 367788887655421 11111111111 23344444444443321 225
Q ss_pred ceEEEeCCCCCHHHHHHHHhh----CCCceEEEEccCHHHHHHHHhcC
Q 024067 144 SGFILDGIPRTRIQAEILDQI----VDVDLVINFKSIEDQLVKRNLES 187 (273)
Q Consensus 144 ~g~IlDg~P~~~~qa~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R 187 (273)
+-.|+|..-...++...+-.. +....+|+|+.|.+.+.+|...|
T Consensus 70 k~tiidAtn~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c~aRNk~~ 117 (168)
T COG4639 70 KFTIIDATNLRREDRRKLIDLAKAYGYKIYAIVFDTPLELCLARNKLR 117 (168)
T ss_pred CeEEEEcccCCHHHHHHHHHHHHHhCCeEEEEEEeCCHHHHHHHhhcc
Confidence 778999987666666555332 44567899999999999997533
No 146
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=98.51 E-value=6.8e-07 Score=76.46 Aligned_cols=124 Identities=22% Similarity=0.194 Sum_probs=68.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCC---eechhHHHHHHccC------C----Ch-------HHHHHHHHHHCCC
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVP---HISMGSLVRQELSP------R----SA-------LYKQIANAVNEGK 120 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~---~is~~dllr~~~~~------~----~~-------~g~~i~~~l~~g~ 120 (273)
.++.+|.|.|++||||||+|+.|++.++.. .|+.|+.....-.. . .+ +.+.+.. +.+|+
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~-L~~g~ 84 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKD-LKQGK 84 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHH-HHcCC
Confidence 456888899999999999999999999865 67777766421110 0 00 1122222 22233
Q ss_pred CCCHHHHHHHHHHHH-HhcccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCc
Q 024067 121 LVPEDVIFALLSKRL-EEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEA 189 (273)
Q Consensus 121 ~~~~~~~~~ll~~~l-~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (273)
.+..-...-.-..+. .........-+||+|+---.. +.+. -..|+-||++++.++++.|...|..
T Consensus 85 ~v~~P~yd~~~~~r~~~~i~~~p~~VVIvEGi~~l~d--~~lr--~~~d~kIfvdtd~D~RliRri~RD~ 150 (218)
T COG0572 85 PVDLPVYDYKTHTREPETIKVEPNDVVIVEGILLLYD--ERLR--DLMDLKIFVDTDADVRLIRRIKRDV 150 (218)
T ss_pred cccccccchhcccccCCccccCCCcEEEEeccccccc--HHHH--hhcCEEEEEeCCccHHHHHHHHHHH
Confidence 221100000000000 000001245678888632211 1111 1357899999999999988877764
No 147
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=98.51 E-value=1.9e-06 Score=74.38 Aligned_cols=186 Identities=17% Similarity=0.222 Sum_probs=90.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC-----CCeechhHHHHHHccC---------CChHHHHHHHHHHCCCCCCHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLVRQELSP---------RSALYKQIANAVNEGKLVPEDV 126 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g-----~~~is~~dllr~~~~~---------~~~~g~~i~~~l~~g~~~~~~~ 126 (273)
.....|+++|.|+.|||++|++|+..++ ..++++|+.=|+.... .++.+..+++-+. ...
T Consensus 10 ~~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~~~~ff~p~n~~~~~~R~~~a------~~~ 83 (222)
T PF01591_consen 10 AGKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQDAEFFDPDNEEAKKLREQIA------KEA 83 (222)
T ss_dssp ---EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-S-GGGGSTT-HHHHHHHHHHH------HHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecccccccccccCCCCChHHHHHHHHHH------HHH
Confidence 3567889999999999999999998773 3578888887766543 1222333332211 111
Q ss_pred HHHHHHHHHHhcccCCcceEEEeCCCCCHHHHHHHHhh---CC-CceEEEEccCHHHHHHHHhcCCcCCCcccccccCCC
Q 024067 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQI---VD-VDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGA 202 (273)
Q Consensus 127 ~~~ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~---~~-~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~ 202 (273)
+..++ ..+.+ .++.--|+|+.=.|....+.+... .. .-++|..-|+++.++++-....... .-.| .
T Consensus 84 l~dl~-~~l~~---~~G~VAI~DATN~T~~RR~~l~~~~~~~~~~vlFIEsic~D~~ii~~NI~~~~~~--spDY----~ 153 (222)
T PF01591_consen 84 LEDLI-EWLQE---EGGQVAIFDATNSTRERRKMLVERFKEHGIKVLFIESICDDPEIIERNIREKKQN--SPDY----K 153 (222)
T ss_dssp HHHHH-HHHHT---S--SEEEEES---SHHHHHHHHHHHHHTT-EEEEEEEE---HHHHHHHHHHHHTT--SGGG----T
T ss_pred HHHHH-HHHhc---CCCeEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEEeCCHHHHHHHHHHHHcC--Cccc----c
Confidence 12222 23332 134556999998888887766432 12 2245555677777666554333211 0011 1
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcC-cEEEEeCCCC------hhHHHHHHHHHHHhcCC
Q 024067 203 RFSAADAASAWKEKFRIYAEQGKSLEDYYSKQR-KLLNFQVAAA------PGETWQGLLSALHLQHM 262 (273)
Q Consensus 203 ~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~-~~~~id~~~s------~~ev~~~I~~~l~~~~~ 262 (273)
....+...+.+.+|++.|+...+|+.+-..+.- .+..+|+... ..-+...|.-.|..-|.
T Consensus 154 ~~~~e~A~~Df~~RI~~Ye~~YEpl~~e~d~~lsyIKiin~g~~v~~n~i~GyL~srIv~~LmNlh~ 220 (222)
T PF01591_consen 154 GMDPEEAIEDFKKRIEHYEKVYEPLDEEEDEDLSYIKIINVGEKVIVNNISGYLQSRIVFYLMNLHI 220 (222)
T ss_dssp TS-HHHHHHHHHHHHHHHHTT-----TTTTTTSEEEEEETTTTEEEEE---SHHHHHHHHHHTT---
T ss_pred cCCHHHHHHHHHHHHHhhcccccccccccccCceEEEEEcCCceEEEecccCEeHHHHHHHHhhcCC
Confidence 111233467888999999999999872222211 2444554322 23345555555555444
No 148
>PTZ00301 uridine kinase; Provisional
Probab=98.49 E-value=1.5e-06 Score=74.66 Aligned_cols=117 Identities=19% Similarity=0.176 Sum_probs=63.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhC-------CCeechhHHHHHHccCCChHHHHHHHHHHCC--CCCCHHHHHHHHHHH
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLLE-------VPHISMGSLVRQELSPRSALYKQIANAVNEG--KLVPEDVIFALLSKR 134 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~g-------~~~is~~dllr~~~~~~~~~g~~i~~~l~~g--~~~~~~~~~~ll~~~ 134 (273)
+.|.|.|+|||||||+|+.|++++. +..++.|+..+.... -+..+ ....+.+ .....+...+.+ ..
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~~~--~~~~~--~~~~~~d~p~a~D~~~l~~~l-~~ 78 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSN--IPESE--RAYTNYDHPKSLEHDLLTTHL-RE 78 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCccc--CCHHH--hcCCCCCChhhhCHHHHHHHH-HH
Confidence 6788999999999999999988762 336677776643210 00000 0000001 001112222222 11
Q ss_pred HHhc--------------------ccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCc
Q 024067 135 LEEG--------------------YYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEA 189 (273)
Q Consensus 135 l~~~--------------------~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (273)
+..+ ......-+|++|+-- . +-..+. ...|+.||++++.++++.|...|..
T Consensus 79 L~~g~~i~~P~yd~~~~~~~~~~~~i~p~~ViIvEGi~~-l-~~~~l~--~l~D~~ifvd~~~d~~~~Rr~~Rd~ 149 (210)
T PTZ00301 79 LKSGKTVQIPQYDYVHHTRSDTAVTMTPKSVLIVEGILL-F-TNAELR--NEMDCLIFVDTPLDICLIRRAKRDM 149 (210)
T ss_pred HHcCCcccCCCcccccCCcCCceEEeCCCcEEEEechhh-h-CCHHHH--HhCCEEEEEeCChhHHHHHHHhhhH
Confidence 2111 011234457788643 1 111121 1467899999999999999988875
No 149
>PRK07429 phosphoribulokinase; Provisional
Probab=98.48 E-value=6.3e-07 Score=81.88 Aligned_cols=39 Identities=31% Similarity=0.426 Sum_probs=33.3
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhC---CCeechhHHH
Q 024067 60 PRRGVQWVLIGDPGVKKHVYADNLSKLLE---VPHISMGSLV 98 (273)
Q Consensus 60 ~~~~~~Ivi~G~pGSGKsT~a~~La~~~g---~~~is~~dll 98 (273)
..++++|.|.|++||||||+++.|++.++ +..++.|++.
T Consensus 5 ~~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~ 46 (327)
T PRK07429 5 PDRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYH 46 (327)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccc
Confidence 35778999999999999999999999987 5567787764
No 150
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=98.42 E-value=1.6e-05 Score=69.10 Aligned_cols=176 Identities=16% Similarity=0.207 Sum_probs=92.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCC------ChHHH----HHHHHHHCCCCCC------H
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPR------SALYK----QIANAVNEGKLVP------E 124 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~------~~~g~----~i~~~l~~g~~~~------~ 124 (273)
.+|.+|+|-|+||.||||+|..||.++|..++=..|.+|+.+.+- ..+.+ .-+.+-......| |
T Consensus 87 ~~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~IREvlR~ii~~~l~PtLh~Ssy~Awkalr~~~~~~piiaGF~d 166 (299)
T COG2074 87 KRPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSIREVLRKIISPELLPTLHTSSYDAWKALRDPTDENPIIAGFED 166 (299)
T ss_pred CCCeEEEecCCCCCChhHHHHHHHHHcCCceeecchHHHHHHHHhCCHHhcchhhHhHHHHHHHhcCCCCCcchhhhHHH
Confidence 357888999999999999999999999998766667777655421 01111 1111111110000 0
Q ss_pred --HH----HHHHHHHHHHhcccCCcceEEEeCC---CCCHHHHHHHHhhCCCceEEEEcc-CHHHHHHHHhcCCcCCCcc
Q 024067 125 --DV----IFALLSKRLEEGYYRGESGFILDGI---PRTRIQAEILDQIVDVDLVINFKS-IEDQLVKRNLESEAFSPHK 194 (273)
Q Consensus 125 --~~----~~~ll~~~l~~~~~~~~~g~IlDg~---P~~~~qa~~l~~~~~~d~vI~L~~-~~e~l~~Rl~~R~~~~~~~ 194 (273)
+. +..++..++.+ +..+|+.|. |.-... +.+ ..-.+.++|.+ +++....|+-.|.....-
T Consensus 167 qa~~V~~GI~~VI~RAi~e-----G~~lIIEGvHlVPg~i~~-~~~---~~n~~~~~l~i~dee~Hr~RF~~R~~~t~~- 236 (299)
T COG2074 167 QASAVMVGIEAVIERAIEE-----GEDLIIEGVHLVPGLIKE-EAL---GNNVFMFMLYIADEELHRERFYDRIRYTHA- 236 (299)
T ss_pred HhHHHHHHHHHHHHHHHhc-----CcceEEEeeeeccccccH-hhh---ccceEEEEEEeCCHHHHHHHHHHHHHHHhc-
Confidence 11 23445555554 467888874 332222 111 12234444444 566677788777532100
Q ss_pred cccccCCCCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhc
Q 024067 195 EFLRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQ 260 (273)
Q Consensus 195 ~~y~~~~~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~ 260 (273)
+.| .+.+.+.+..|+....-+.+--++++ +=.++ +.+.++....|++.+..+
T Consensus 237 ------~rp------~~Ryl~yf~EiR~I~Dyl~~~Are~g-VPvI~-n~di~etv~~il~~i~~~ 288 (299)
T COG2074 237 ------SRP------GGRYLEYFKEIRTIHDYLVERAREHG-VPVIE-NDDIDETVDRILEDIRKR 288 (299)
T ss_pred ------cCc------hhHHHHHHHHHHHHHHHHHHHHHhcC-CCeec-cccHHHHHHHHHHHHHHH
Confidence 011 12333444444433333333334455 33455 567888888887777654
No 151
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.42 E-value=1.4e-06 Score=75.30 Aligned_cols=34 Identities=26% Similarity=0.260 Sum_probs=28.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhC-------CCeechhHHH
Q 024067 65 QWVLIGDPGVKKHVYADNLSKLLE-------VPHISMGSLV 98 (273)
Q Consensus 65 ~Ivi~G~pGSGKsT~a~~La~~~g-------~~~is~~dll 98 (273)
+|.|.|++||||||+++.|+..+. +.+|++|+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~ 41 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL 41 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence 367999999999999999999883 3567777765
No 152
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=98.38 E-value=3.5e-06 Score=69.56 Aligned_cols=110 Identities=15% Similarity=0.123 Sum_probs=62.0
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHh---CC-CeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHH--HHHHH
Q 024067 60 PRRGVQWVLIGDPGVKKHVYADNLSKLL---EV-PHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIF--ALLSK 133 (273)
Q Consensus 60 ~~~~~~Ivi~G~pGSGKsT~a~~La~~~---g~-~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~--~ll~~ 133 (273)
+.+|..|-++|.+||||||+|..|.+++ |. .++--||-+|.-+..+-.+.++= -.+.+. .-+.+
T Consensus 20 ~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~ed----------R~eniRRvaevAk 89 (197)
T COG0529 20 GQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSRED----------RIENIRRVAEVAK 89 (197)
T ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCChHH----------HHHHHHHHHHHHH
Confidence 4567888899999999999999999988 32 33334677776554321110000 001111 12222
Q ss_pred HHHhcccCCcceEEEeCCCCCHHHHHHH-Hh-hC-CCceEEEEccCHHHHHHHH
Q 024067 134 RLEEGYYRGESGFILDGIPRTRIQAEIL-DQ-IV-DVDLVINFKSIEDQLVKRN 184 (273)
Q Consensus 134 ~l~~~~~~~~~g~IlDg~P~~~~qa~~l-~~-~~-~~d~vI~L~~~~e~l~~Rl 184 (273)
.+.. ...++|..|-.-......+ .. +. ...+-||++||.+++.+|=
T Consensus 90 ll~d-----aG~iviva~ISP~r~~R~~aR~~~~~~~FiEVyV~~pl~vce~RD 138 (197)
T COG0529 90 LLAD-----AGLIVIVAFISPYREDRQMARELLGEGEFIEVYVDTPLEVCERRD 138 (197)
T ss_pred HHHH-----CCeEEEEEeeCccHHHHHHHHHHhCcCceEEEEeCCCHHHHHhcC
Confidence 2332 2445666654433322222 11 12 2457899999999998873
No 153
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=98.34 E-value=4e-05 Score=62.49 Aligned_cols=67 Identities=16% Similarity=0.207 Sum_probs=51.8
Q ss_pred eEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHHHHHHhhHHHHHHHH-hcCcEEEEeCCCChh
Q 024067 169 LVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYS-KQRKLLNFQVAAAPG 247 (273)
Q Consensus 169 ~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~-~~~~~~~id~~~s~~ 247 (273)
++|++.++++++.+|+.+|+. ++.|.+..|+..-. .|. ..+.+++||.++.++
T Consensus 117 lvv~ita~p~VLaqRL~~RGR------------------Es~eeI~aRL~R~a--------~~~~~~~dv~~idNsG~l~ 170 (192)
T COG3709 117 LVVCITASPEVLAQRLAERGR------------------ESREEILARLARAA--------RYTAGPGDVTTIDNSGELE 170 (192)
T ss_pred eeEEEecCHHHHHHHHHHhcc------------------CCHHHHHHHHHhhc--------ccccCCCCeEEEcCCCcHH
Confidence 699999999999999999974 34567777775322 122 234689999999999
Q ss_pred HHHHHHHHHHHhcC
Q 024067 248 ETWQGLLSALHLQH 261 (273)
Q Consensus 248 ev~~~I~~~l~~~~ 261 (273)
..-+.+...|....
T Consensus 171 ~ag~~ll~~l~~~~ 184 (192)
T COG3709 171 DAGERLLALLHQDS 184 (192)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999888554
No 154
>PHA00729 NTP-binding motif containing protein
Probab=98.33 E-value=4e-06 Score=72.42 Aligned_cols=111 Identities=14% Similarity=0.039 Sum_probs=62.2
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCC--CeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhccc
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEV--PHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYY 140 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~--~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~ 140 (273)
...|+|+|+||+||||+|..|+++++. ..+..++..+.. .. ....++.+.....+.......
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~--~~------------~~~fid~~~Ll~~L~~a~~~~-- 80 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQY--VQ------------NSYFFELPDALEKIQDAIDND-- 80 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhc--CC------------cEEEEEHHHHHHHHHHHHhcC--
Confidence 357999999999999999999998752 222222111110 00 011122233334443333221
Q ss_pred CCcceEEEeCCCCCHH----HHH------HHHhh--CCCceEEEEccCHHHHHHHHhcCCc
Q 024067 141 RGESGFILDGIPRTRI----QAE------ILDQI--VDVDLVINFKSIEDQLVKRNLESEA 189 (273)
Q Consensus 141 ~~~~g~IlDg~P~~~~----qa~------~l~~~--~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (273)
....-+|||++.--.. ..+ .+... ..+++++++.++++.+.+++..|+.
T Consensus 81 ~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~Rg~ 141 (226)
T PHA00729 81 YRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLREKGW 141 (226)
T ss_pred CCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHhCCC
Confidence 1112369998432211 100 11111 2478899999999999999999874
No 155
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=98.33 E-value=1e-06 Score=73.67 Aligned_cols=36 Identities=25% Similarity=0.246 Sum_probs=31.5
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh-----CCCeechhHHHHH
Q 024067 65 QWVLIGDPGVKKHVYADNLSKLL-----EVPHISMGSLVRQ 100 (273)
Q Consensus 65 ~Ivi~G~pGSGKsT~a~~La~~~-----g~~~is~~dllr~ 100 (273)
.|.|.|+|||||||+|+.|++.+ ++.+|++|++...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~ 41 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVP 41 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccC
Confidence 37899999999999999999997 4678999998863
No 156
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=98.29 E-value=7.4e-05 Score=65.24 Aligned_cols=149 Identities=16% Similarity=0.099 Sum_probs=84.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCCc
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE 143 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~~ 143 (273)
..|+|+|.+|||||+..+.| +.+|+-+++- +|.+++-+++.-..........
T Consensus 2 ~lvIVTGlSGAGKsvAl~~l-EDlGyycvDN---------------------------LPp~Llp~~~~~~~~~~~~~~k 53 (286)
T COG1660 2 RLVIVTGLSGAGKSVALRVL-EDLGYYCVDN---------------------------LPPQLLPKLADLMLTLESRITK 53 (286)
T ss_pred cEEEEecCCCCcHHHHHHHH-HhcCeeeecC---------------------------CCHHHHHHHHHHHhhcccCCce
Confidence 46889999999999988777 6678777642 2333443443311111100123
Q ss_pred ceEEEeC----CCCCHHH-HHHHHhhCCCc-eEEEEccCHHHHHHHHhc-CCcCCCcccccccCCCCCCCCCcHHHHHHH
Q 024067 144 SGFILDG----IPRTRIQ-AEILDQIVDVD-LVINFKSIEDQLVKRNLE-SEAFSPHKEFLRLGGARFSAADAASAWKEK 216 (273)
Q Consensus 144 ~g~IlDg----~P~~~~q-a~~l~~~~~~d-~vI~L~~~~e~l~~Rl~~-R~~~~~~~~~y~~~~~~~~~~d~~e~~~~r 216 (273)
-.+++|- |+....+ ...|.+...++ .++||+++++++++|... |+.+|. ..++. +.+-
T Consensus 54 vAv~iDiRs~~~~~~l~~~l~~l~~~~~~~~~iLFLeA~~~~Lv~RY~etRR~HPL------------~~~~~---l~~~ 118 (286)
T COG1660 54 VAVVIDVRSREFFGDLEEVLDELKDNGDIDPRVLFLEADDETLVRRYSETRRSHPL------------SEDGL---LLEA 118 (286)
T ss_pred EEEEEecccchhHHHHHHHHHHHHhcCCCCceEEEEECchhHHHHHHhhhhhcCCC------------CccCc---HHHH
Confidence 3467773 2222222 12232222222 599999999999999954 444442 22221 3333
Q ss_pred HHHHHHhhHHHHHHHHhcCcEEEEeCC-CChhHHHHHHHHHHHhc
Q 024067 217 FRIYAEQGKSLEDYYSKQRKLLNFQVA-AAPGETWQGLLSALHLQ 260 (273)
Q Consensus 217 l~~y~~~~~~l~~~y~~~~~~~~id~~-~s~~ev~~~I~~~l~~~ 260 (273)
+..-++...|+.+.-+ ..||++ .++.++-+.|...+..+
T Consensus 119 I~~ERelL~pLk~~A~-----~vIDTs~ls~~~Lr~~i~~~f~~~ 158 (286)
T COG1660 119 IAKERELLAPLREIAD-----LVIDTSELSVHELRERIRTRFLGK 158 (286)
T ss_pred HHHHHHHHHHHHHHhh-----hEeecccCCHHHHHHHHHHHHccC
Confidence 4444444555544221 457776 48999999999888753
No 157
>PRK05439 pantothenate kinase; Provisional
Probab=98.28 E-value=3.4e-06 Score=76.37 Aligned_cols=39 Identities=21% Similarity=0.190 Sum_probs=32.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC-------CCeechhHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE-------VPHISMGSLVR 99 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g-------~~~is~~dllr 99 (273)
.++..|.|.|+|||||||+|+.|++.++ +..|++|+++.
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~ 129 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLY 129 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEecccccc
Confidence 4678899999999999999999998663 45788888774
No 158
>PLN02348 phosphoribulokinase
Probab=98.23 E-value=2.9e-06 Score=78.69 Aligned_cols=28 Identities=21% Similarity=0.296 Sum_probs=25.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE 88 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g 88 (273)
.++..|.|.|++||||||+++.|++.++
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg 74 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVFG 74 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4678899999999999999999999996
No 159
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=98.22 E-value=2.7e-06 Score=71.91 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=22.5
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhC
Q 024067 65 QWVLIGDPGVKKHVYADNLSKLLE 88 (273)
Q Consensus 65 ~Ivi~G~pGSGKsT~a~~La~~~g 88 (273)
+|.|.|++||||||+|+.|+..++
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999996
No 160
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.17 E-value=6.8e-06 Score=73.35 Aligned_cols=34 Identities=24% Similarity=0.334 Sum_probs=28.5
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh---CCCeechhHHH
Q 024067 65 QWVLIGDPGVKKHVYADNLSKLL---EVPHISMGSLV 98 (273)
Q Consensus 65 ~Ivi~G~pGSGKsT~a~~La~~~---g~~~is~~dll 98 (273)
.|.|+|++||||||+++.|+..+ +...|+.|++.
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~ 37 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYH 37 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECcccc
Confidence 36799999999999999999887 45678887764
No 161
>PRK15453 phosphoribulokinase; Provisional
Probab=98.13 E-value=1.3e-05 Score=71.36 Aligned_cols=39 Identities=13% Similarity=0.199 Sum_probs=32.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC-----CCeechhHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLVR 99 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g-----~~~is~~dllr 99 (273)
.+++.|.|+|+|||||||+++.|++.++ ..+|+.|++.+
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ 46 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR 46 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence 3678999999999999999999999874 45677776664
No 162
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=98.12 E-value=1.9e-06 Score=71.50 Aligned_cols=35 Identities=17% Similarity=0.180 Sum_probs=29.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhC--CCeechhHHH
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLLE--VPHISMGSLV 98 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~g--~~~is~~dll 98 (273)
++|+|+|+|||||||+|..|+..++ +.||+++...
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~ 38 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPF 38 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCC
Confidence 5789999999999999999999987 5577765543
No 163
>PRK09169 hypothetical protein; Validated
Probab=98.06 E-value=3e-05 Score=83.70 Aligned_cols=108 Identities=12% Similarity=0.022 Sum_probs=78.1
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCC
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRG 142 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~ 142 (273)
...|+|+|.+|+||||+++.|++++++.++++|..+.+ ..++.|.+++...+ ++.+.....+.+.+.
T Consensus 2110 ~~aIvLIG~MGaGKTTIGr~LA~~Lg~~FiDtD~kIek------s~GrkI~rIFa~eG-~FRe~Eaa~V~Dllr------ 2176 (2316)
T PRK09169 2110 AQARRIEREVGPLLQALLQKLAGGLRVDKPHSVRKIAK------KIGKKIARIQALRG-LSPEQAAARVRDALR------ 2176 (2316)
T ss_pred hcccceeeCCCCCHhHHHHHHHHHhCCCccccHHHHHH------HhCCCHHHHHHhcC-chHHHHHHHHHHHhc------
Confidence 45799999999999999999999999999999988876 34566777765443 777777777777663
Q ss_pred cceEEEe--CC-CCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcC
Q 024067 143 ESGFILD--GI-PRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLES 187 (273)
Q Consensus 143 ~~g~IlD--g~-P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R 187 (273)
...||. |+ +........|. .-.++|++..+.+++.+|+...
T Consensus 2177 -~~vVLSTGGGav~~~enr~~L~---~~GlvV~L~an~~tl~~Rty~g 2220 (2316)
T PRK09169 2177 -WEVVLPAEGFGAAVEQARQALG---AKGLRVMRINNGFAAPDTTYAG 2220 (2316)
T ss_pred -CCeEEeCCCCcccCHHHHHHHH---HCCEEEEEECCHHHHHHHhccC
Confidence 123332 22 22233333343 3457999999999999998644
No 164
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.04 E-value=1.6e-05 Score=71.49 Aligned_cols=39 Identities=23% Similarity=0.226 Sum_probs=30.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC-------CCeechhHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE-------VPHISMGSLVR 99 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g-------~~~is~~dllr 99 (273)
..+.+|.|.|++||||||+++.|...+. +..+++|+...
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~ 105 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLH 105 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccc
Confidence 4578899999999999999998877663 44577776553
No 165
>PRK06761 hypothetical protein; Provisional
Probab=98.02 E-value=0.00018 Score=64.40 Aligned_cols=33 Identities=24% Similarity=0.286 Sum_probs=28.2
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeechh
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMG 95 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~ 95 (273)
++.|+|+|+|||||||+++.|+++++...++++
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~ 35 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGIEVE 35 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCcCceEEE
Confidence 457999999999999999999999986655554
No 166
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.00 E-value=4.7e-06 Score=64.94 Aligned_cols=29 Identities=34% Similarity=0.571 Sum_probs=25.6
Q ss_pred EEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067 66 WVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (273)
Q Consensus 66 Ivi~G~pGSGKsT~a~~La~~~g~~~is~ 94 (273)
|+|.||||+||||+++.|++.++++++.+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i 29 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEI 29 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEE
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccc
Confidence 68999999999999999999999766443
No 167
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=97.93 E-value=9.9e-05 Score=61.65 Aligned_cols=115 Identities=17% Similarity=0.143 Sum_probs=59.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChH--------HHHHH--HH---HHCC-------CCCCH
Q 024067 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSAL--------YKQIA--NA---VNEG-------KLVPE 124 (273)
Q Consensus 65 ~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~--------g~~i~--~~---l~~g-------~~~~~ 124 (273)
+|.|.+..|||++++|++||+++|+++++- +++.+.... ..+ .+... .. +..+ ....+
T Consensus 1 IITIsr~~Gsgg~~Ia~~LA~~Lg~~~~d~-~ii~~~a~~-~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (179)
T PF13189_consen 1 IITISRQYGSGGREIAERLAEKLGYPYYDR-EIIEEAAKE-SGISEEEFEEFDEKKPFNSFLYDFFRGMFPGSFEDHPDD 78 (179)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHCT--EE-H-HHHHHCT-------------SS-HHH--HH---HHS-------------
T ss_pred CEEECCCCCCChHHHHHHHHHHcCCccCCH-HHHHHHHHH-ccCCHHHHHHHhccccCcchhhhhhccccccccccccHH
Confidence 478999999999999999999999999997 777654332 111 11111 11 1111 11223
Q ss_pred HHHHHHHHHHHHhcccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCC
Q 024067 125 DVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESE 188 (273)
Q Consensus 125 ~~~~~ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (273)
+.+.....+.+... ....++|+.|.- +..+-.-.+..+-|+|.+|.+..++|+..+.
T Consensus 79 ~~~~~~~~~~i~~l--a~~~~~Vi~GR~-----a~~il~~~~~~l~V~i~A~~~~Rv~ri~~~~ 135 (179)
T PF13189_consen 79 DKIFRAQSEIIREL--AAKGNCVIVGRC-----ANYILRDIPNVLHVFIYAPLEFRVERIMERE 135 (179)
T ss_dssp -HHHHHHHHHHHHH--HH---EEEESTT-----HHHHTTT-TTEEEEEEEE-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hccCCEEEEecC-----HhhhhCCCCCeEEEEEECCHHHHHHHHHHHc
Confidence 33444333333332 113567777642 1111111123479999999999999998874
No 168
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=97.93 E-value=4.3e-05 Score=76.35 Aligned_cols=32 Identities=16% Similarity=0.314 Sum_probs=27.1
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~ 94 (273)
...|+++|.||+||||+++.|++.+++..+++
T Consensus 215 ~~~~~~vglp~~GKStia~~L~~~l~~~~~~~ 246 (664)
T PTZ00322 215 SLIVIMVGLPGRGKTYVARQIQRYFQWNGLQS 246 (664)
T ss_pred ceeEEecccCCCChhHHHHHHHHHHHhcCCCc
Confidence 35788999999999999999999996665544
No 169
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.89 E-value=0.00012 Score=68.68 Aligned_cols=92 Identities=16% Similarity=0.199 Sum_probs=53.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh----C--CCeechhHHHHHHccCCChHHHHHHHHHHCCCC-C-CHHHHHHHHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL----E--VPHISMGSLVRQELSPRSALYKQIANAVNEGKL-V-PEDVIFALLSK 133 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~----g--~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~-~-~~~~~~~ll~~ 133 (273)
++..|+|+||+||||||++..||..+ | +..++. |..|.. ...+++.+.+.... + .... ...+.+
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~-Dt~R~a------A~eQLk~yAe~lgvp~~~~~~-~~~l~~ 293 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTT-DNYRIA------AIEQLKRYADTMGMPFYPVKD-IKKFKE 293 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecc-cchhhh------HHHHHHHHHHhcCCCeeehHH-HHHHHH
Confidence 46678899999999999999999866 2 333444 444431 11234444333222 1 1111 223333
Q ss_pred HHHhcccCCcceEEEe--CCC-CCHHHHHHHHhh
Q 024067 134 RLEEGYYRGESGFILD--GIP-RTRIQAEILDQI 164 (273)
Q Consensus 134 ~l~~~~~~~~~g~IlD--g~P-~~~~qa~~l~~~ 164 (273)
.+.. .+...+||| |++ ++..|.+.|..+
T Consensus 294 ~l~~---~~~D~VLIDTaGr~~rd~~~l~eL~~~ 324 (432)
T PRK12724 294 TLAR---DGSELILIDTAGYSHRNLEQLERMQSF 324 (432)
T ss_pred HHHh---CCCCEEEEeCCCCCccCHHHHHHHHHH
Confidence 4432 234679999 664 677888777654
No 170
>PLN02165 adenylate isopentenyltransferase
Probab=97.87 E-value=1.5e-05 Score=72.57 Aligned_cols=38 Identities=16% Similarity=0.197 Sum_probs=34.5
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHH
Q 024067 60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSL 97 (273)
Q Consensus 60 ~~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dl 97 (273)
+.++..|+|+||+||||||++..||+.++..+|++|.+
T Consensus 40 ~~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~ 77 (334)
T PLN02165 40 NCKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKM 77 (334)
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChh
Confidence 34567899999999999999999999999999999876
No 171
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.83 E-value=3.7e-05 Score=61.43 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=21.3
Q ss_pred EEEEcCCCCChhHHHHHHHHHhC
Q 024067 66 WVLIGDPGVKKHVYADNLSKLLE 88 (273)
Q Consensus 66 Ivi~G~pGSGKsT~a~~La~~~g 88 (273)
|+|+||+||||||+++.|++.+.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCC
Confidence 78999999999999999999874
No 172
>PLN02318 phosphoribulokinase/uridine kinase
Probab=97.82 E-value=0.00015 Score=70.54 Aligned_cols=37 Identities=19% Similarity=0.314 Sum_probs=31.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh-CCCeechhHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL-EVPHISMGSLV 98 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~-g~~~is~~dll 98 (273)
.+..|.|.||+||||||+++.|+..+ +...|++|+..
T Consensus 64 ~riIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy~ 101 (656)
T PLN02318 64 GIILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNYN 101 (656)
T ss_pred CeEEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEccee
Confidence 46788899999999999999999988 45678887753
No 173
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=97.82 E-value=1.9e-05 Score=71.51 Aligned_cols=36 Identities=28% Similarity=0.260 Sum_probs=32.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSL 97 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dl 97 (273)
+++.|+|+||+||||||+|..|+++++..+||.|.+
T Consensus 3 ~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~ 38 (307)
T PRK00091 3 KPKVIVIVGPTASGKTALAIELAKRLNGEIISADSM 38 (307)
T ss_pred CceEEEEECCCCcCHHHHHHHHHHhCCCcEEecccc
Confidence 457899999999999999999999999999998774
No 174
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=6.3e-05 Score=72.65 Aligned_cols=122 Identities=22% Similarity=0.262 Sum_probs=71.9
Q ss_pred CCCCCCCeEEEEEcCCCCChhHHHHHHHHHhCCCeech--hHHHHHHccCCChHHHHHHHHHHCCCC-------------
Q 024067 57 GSPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM--GSLVRQELSPRSALYKQIANAVNEGKL------------- 121 (273)
Q Consensus 57 ~~~~~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~--~dllr~~~~~~~~~g~~i~~~l~~g~~------------- 121 (273)
|-.|.+| |+|.||||+|||.+|+.||.++|++++++ -+++. -+.+.+ -+.|++.+.+...
T Consensus 219 Gv~PprG--vLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivS-GvSGES--EkkiRelF~~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 219 GVRPPRG--VLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVS-GVSGES--EKKIRELFDQAKSNAPCIVFIDEIDA 293 (802)
T ss_pred CCCCCCc--eeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhc-ccCccc--HHHHHHHHHHHhccCCeEEEeecccc
Confidence 3444444 67899999999999999999999999874 22332 122222 2455555543211
Q ss_pred -------CCHHHHHHHHHHHHHhccc-----CCcceEEEeC---CCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHh
Q 024067 122 -------VPEDVIFALLSKRLEEGYY-----RGESGFILDG---IPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNL 185 (273)
Q Consensus 122 -------~~~~~~~~ll~~~l~~~~~-----~~~~g~IlDg---~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~ 185 (273)
...++..+++.+.+...+- ..+.++++=| -|.... -.|...+.+|.=|.|.+|.++..++++
T Consensus 294 I~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslD--paLRRaGRFdrEI~l~vP~e~aR~~IL 370 (802)
T KOG0733|consen 294 ITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLD--PALRRAGRFDREICLGVPSETAREEIL 370 (802)
T ss_pred cccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccC--HHHhccccccceeeecCCchHHHHHHH
Confidence 1123334444444432211 1235565544 233332 235556789999999999988877764
No 175
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.78 E-value=0.00029 Score=62.47 Aligned_cols=30 Identities=23% Similarity=0.308 Sum_probs=26.7
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCee
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHI 92 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~i 92 (273)
+..++|.|+||+|||++|+.|++.+|.+++
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~ 50 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVM 50 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEE
Confidence 456779999999999999999999988766
No 176
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.78 E-value=0.0002 Score=63.31 Aligned_cols=27 Identities=30% Similarity=0.525 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
..+..++|.||||+||||+|+.+++.+
T Consensus 40 ~~~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 40 KQVLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999999875
No 177
>PLN02840 tRNA dimethylallyltransferase
Probab=97.76 E-value=2.8e-05 Score=72.99 Aligned_cols=37 Identities=30% Similarity=0.261 Sum_probs=32.7
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhH
Q 024067 60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGS 96 (273)
Q Consensus 60 ~~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~d 96 (273)
..+++.|+|.||+||||||++..|+++++..+|+.|.
T Consensus 18 ~~~~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds 54 (421)
T PLN02840 18 TKKEKVIVISGPTGAGKSRLALELAKRLNGEIISADS 54 (421)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHCCCCeEeccc
Confidence 3456789999999999999999999999988888765
No 178
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.75 E-value=1.2e-05 Score=65.50 Aligned_cols=42 Identities=19% Similarity=0.370 Sum_probs=33.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHcc
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELS 103 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~ 103 (273)
..++|+|+|+||+||||++.+|++.+.-.-+.++.++-.++.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR 45 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVR 45 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeee
Confidence 468999999999999999999999886554555555555554
No 179
>PHA03136 thymidine kinase; Provisional
Probab=97.73 E-value=0.0019 Score=59.70 Aligned_cols=24 Identities=8% Similarity=-0.020 Sum_probs=22.2
Q ss_pred CCceEEEEccCHHHHHHHHhcCCc
Q 024067 166 DVDLVINFKSIEDQLVKRNLESEA 189 (273)
Q Consensus 166 ~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (273)
.||.+|+|+++.+++.+|+.+|..
T Consensus 191 ~pD~IIyL~l~~e~~~~RI~kRgR 214 (378)
T PHA03136 191 HGGNIVIMDLDECEHAERIIARGR 214 (378)
T ss_pred CCCEEEEEeCCHHHHHHHHHHcCC
Confidence 589999999999999999999874
No 180
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=97.69 E-value=0.0012 Score=55.79 Aligned_cols=122 Identities=14% Similarity=0.125 Sum_probs=73.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHh-CCCeechhHHHHHHcc----CC-------------ChHHHHHHHHHHCCCCCCH-
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLL-EVPHISMGSLVRQELS----PR-------------SALYKQIANAVNEGKLVPE- 124 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~-g~~~is~~dllr~~~~----~~-------------~~~g~~i~~~l~~g~~~~~- 124 (273)
.+|.|.|..-|||||+|+.|...| |+..|+-||....+.. .+ ..+.+.|+..+.+....|+
T Consensus 5 ~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDFyKp~~Ei~v~~~n~~~wd~~esLdm~~fl~~ia~~l~~~~~~~~a 84 (225)
T KOG3308|consen 5 LIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFYKPENEIEVDYNNIDNWDLLESLDMEKFLEKIATWLDSRHNAPEA 84 (225)
T ss_pred EEEEeecccCCCHhHHHHHHHHHccCCeeeccccccCchhhhhcccCCcchhcchhhhhHHHHHHHHHHHhcCccccchH
Confidence 456689999999999999999999 6788888887643211 11 0123445555655444433
Q ss_pred -HHHH-H-HHHHHHH--hcccCCcceEEEeCCCCC--HHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCC
Q 024067 125 -DVIF-A-LLSKRLE--EGYYRGESGFILDGIPRT--RIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFS 191 (273)
Q Consensus 125 -~~~~-~-ll~~~l~--~~~~~~~~g~IlDg~P~~--~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~ 191 (273)
+... . .+..... +.......-+|+|||--. ..|.. ..|..|.+..+.+++.+|-..|...+
T Consensus 85 r~~~v~~~~~~~~~~~~q~~~~~~~iviidGfmiy~y~p~~~------~~d~~im~~~~y~~~krRr~~Rt~y~ 152 (225)
T KOG3308|consen 85 REHLVSYANFEHYAQQFQIKAYKNHIVIIDGFMIYNYKPQVD------LFDRIIMLTLDYETCKRRREARTYYP 152 (225)
T ss_pred hhhhhhhhHHHHHhhhcCcccccCcEEEEecceEEecchhhh------hhhhheeeeccHHHHHHhhcccccCC
Confidence 1111 1 1111111 111123455899998432 12222 45689999999999999998887643
No 181
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.68 E-value=2.3e-05 Score=64.10 Aligned_cols=27 Identities=22% Similarity=0.405 Sum_probs=21.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCee
Q 024067 65 QWVLIGDPGVKKHVYADNLSKLLEVPHI 92 (273)
Q Consensus 65 ~Ivi~G~pGSGKsT~a~~La~~~g~~~i 92 (273)
+|+|+|+||+||||+++.|++. |++++
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred CEEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence 5899999999999999999999 98877
No 182
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.67 E-value=0.00017 Score=63.86 Aligned_cols=35 Identities=11% Similarity=0.190 Sum_probs=29.3
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhC-----CCeechhHHHH
Q 024067 65 QWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLVR 99 (273)
Q Consensus 65 ~Ivi~G~pGSGKsT~a~~La~~~g-----~~~is~~dllr 99 (273)
.|.|+|++||||||+++.|++.++ +.+|+.|+..+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr 40 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR 40 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 377999999999999999998874 45788877775
No 183
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.63 E-value=0.0021 Score=52.51 Aligned_cols=150 Identities=13% Similarity=0.098 Sum_probs=77.1
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh--CCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhccc
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLL--EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYY 140 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~--g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~ 140 (273)
+...++-||.||||||+-..+--.+ ++.+|+.|.+.-+ +.+..+....|+.. ......+...+..
T Consensus 2 ~~l~IvaG~NGsGKstv~~~~~~~~~~~~~~VN~D~iA~~-i~p~~p~~~~i~A~---------r~ai~~i~~~I~~--- 68 (187)
T COG4185 2 KRLDIVAGPNGSGKSTVYASTLAPLLPGIVFVNADEIAAQ-ISPDNPTSAAIQAA---------RVAIDRIARLIDL--- 68 (187)
T ss_pred ceEEEEecCCCCCceeeeeccchhhcCCeEEECHHHHhhh-cCCCCchHHHHHHH---------HHHHHHHHHHHHc---
Confidence 4577889999999999876654444 5789999877654 33333322222111 1222333333333
Q ss_pred CCcceEEEeCCCCCHHHHHHHHhhCCCceEE---EEcc-CHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHH
Q 024067 141 RGESGFILDGIPRTRIQAEILDQIVDVDLVI---NFKS-IEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEK 216 (273)
Q Consensus 141 ~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI---~L~~-~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~r 216 (273)
+.+|.....-....-.+.+.......+.| ++-+ +.|..++|+..|-... |. +=.++.++.|
T Consensus 69 --~~~F~~ETtLS~~s~~~~ik~Ak~~Gf~I~L~y~~i~~~elavERVk~RVa~G--GH-----------~IpED~Ir~R 133 (187)
T COG4185 69 --GRPFIAETTLSGPSILELIKTAKAAGFYIVLNYIVIDSVELAVERVKLRVAKG--GH-----------DIPEDKIRRR 133 (187)
T ss_pred --CCCcceEEeeccchHHHHHHHHHhCCeEEEEEEEEeCcHHHHHHHHHHHHhcC--CC-----------CCcHHHHHHH
Confidence 45666654434333344443222222222 2222 4567888887774321 10 1124577766
Q ss_pred HHHHHHhhHHHHHHHHhcCcEEEEeCC
Q 024067 217 FRIYAEQGKSLEDYYSKQRKLLNFQVA 243 (273)
Q Consensus 217 l~~y~~~~~~l~~~y~~~~~~~~id~~ 243 (273)
+.. ..+.+..|+.-.+.+..-|.+
T Consensus 134 Y~r---sle~l~~~l~l~dr~~IydNS 157 (187)
T COG4185 134 YRR---SLELLAQALTLADRATIYDNS 157 (187)
T ss_pred HHH---HHHHHHHHHhhcceeEEecCC
Confidence 554 344455555554544444543
No 184
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.62 E-value=4.6e-05 Score=58.84 Aligned_cols=28 Identities=32% Similarity=0.546 Sum_probs=24.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~ 90 (273)
+..++|+|||||||||+++.|+..++..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 4578999999999999999999998654
No 185
>PLN02748 tRNA dimethylallyltransferase
Probab=97.62 E-value=7e-05 Score=71.38 Aligned_cols=36 Identities=25% Similarity=0.276 Sum_probs=32.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGS 96 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~d 96 (273)
.++..|+|+||+||||||++..||++++..+|+.|.
T Consensus 20 ~~~~~i~i~GptgsGKs~la~~la~~~~~eii~~Ds 55 (468)
T PLN02748 20 GKAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADS 55 (468)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCch
Confidence 356789999999999999999999999999999874
No 186
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.61 E-value=0.00025 Score=55.28 Aligned_cols=84 Identities=18% Similarity=0.172 Sum_probs=45.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh--------CCCeechhHHHHHHccCCChHHHHHHHHHHCCCCC--CHHHHHHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL--------EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLV--PEDVIFALL 131 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~--------g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~--~~~~~~~ll 131 (273)
+...++|.|+||+|||++++.+++.+ +...+.+. +- ... ....+...+.+.+...... +.+.....+
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~-~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~ 79 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVN-CP-SSR-TPRDFAQEILEALGLPLKSRQTSDELRSLL 79 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEE-HH-HHS-SHHHHHHHHHHHHT-SSSSTS-HHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEE-eC-CCC-CHHHHHHHHHHHhCccccccCCHHHHHHHH
Confidence 34578899999999999999999987 43333221 11 111 1123445555555433222 334444677
Q ss_pred HHHHHhcccCCcceEEEeCC
Q 024067 132 SKRLEEGYYRGESGFILDGI 151 (273)
Q Consensus 132 ~~~l~~~~~~~~~g~IlDg~ 151 (273)
.+.+.... ..-+|||.+
T Consensus 80 ~~~l~~~~---~~~lviDe~ 96 (131)
T PF13401_consen 80 IDALDRRR---VVLLVIDEA 96 (131)
T ss_dssp HHHHHHCT---EEEEEEETT
T ss_pred HHHHHhcC---CeEEEEeCh
Confidence 77777641 245788875
No 187
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=97.59 E-value=5.5e-05 Score=70.86 Aligned_cols=35 Identities=31% Similarity=0.451 Sum_probs=31.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGS 96 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~d 96 (273)
.|..|+|+||||+||||+|+.||+.++++++.++.
T Consensus 46 ~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vda 80 (441)
T TIGR00390 46 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 80 (441)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeec
Confidence 45689999999999999999999999999888763
No 188
>CHL00181 cbbX CbbX; Provisional
Probab=97.58 E-value=0.00028 Score=63.45 Aligned_cols=28 Identities=25% Similarity=0.491 Sum_probs=24.6
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 60 PRRGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 60 ~~~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
+..+..++|.||||+||||+|+.+++.+
T Consensus 56 ~~~~~~ill~G~pGtGKT~lAr~la~~~ 83 (287)
T CHL00181 56 SNPGLHMSFTGSPGTGKTTVALKMADIL 83 (287)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 3457789999999999999999999876
No 189
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.53 E-value=8.6e-05 Score=64.00 Aligned_cols=32 Identities=22% Similarity=0.231 Sum_probs=24.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeec
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHIS 93 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is 93 (273)
....+++.||||.||||+|..||++++..+..
T Consensus 49 ~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~ 80 (233)
T PF05496_consen 49 ALDHMLFYGPPGLGKTTLARIIANELGVNFKI 80 (233)
T ss_dssp ---EEEEESSTTSSHHHHHHHHHHHCT--EEE
T ss_pred CcceEEEECCCccchhHHHHHHHhccCCCeEe
Confidence 35688999999999999999999999976643
No 190
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=97.53 E-value=6.9e-05 Score=67.19 Aligned_cols=32 Identities=31% Similarity=0.317 Sum_probs=29.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCeechhH
Q 024067 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGS 96 (273)
Q Consensus 65 ~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~d 96 (273)
.|+|+||+|||||+++..|++.++..+||+|.
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~~~~iis~Ds 32 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKLNAEIISVDS 32 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCCcEEEech
Confidence 37899999999999999999999999999876
No 191
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=97.51 E-value=8.4e-05 Score=69.69 Aligned_cols=35 Identities=31% Similarity=0.451 Sum_probs=31.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGS 96 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~d 96 (273)
.+..|+|+||||+||||+|+.|++.++++++.++-
T Consensus 49 ~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~ 83 (443)
T PRK05201 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 83 (443)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCChheeecc
Confidence 35789999999999999999999999998887754
No 192
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=97.51 E-value=0.00012 Score=64.61 Aligned_cols=28 Identities=29% Similarity=0.237 Sum_probs=25.4
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 60 PRRGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 60 ~~~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
...+.+|.|.|+||+||||+|+.|++.+
T Consensus 79 ~~~pfIIgiaGsvavGKST~ar~L~~ll 106 (283)
T COG1072 79 QQRPFIIGIAGSVAVGKSTTARILQALL 106 (283)
T ss_pred CCCCEEEEeccCccccHHHHHHHHHHHH
Confidence 4568899999999999999999999877
No 193
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=97.50 E-value=0.00011 Score=63.34 Aligned_cols=39 Identities=13% Similarity=0.111 Sum_probs=32.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCe-echhHHHHHHcc
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLLEVPH-ISMGSLVRQELS 103 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~-is~~dllr~~~~ 103 (273)
++|.|+|.|||||||+++.+.+. |.++ +++++.++..+.
T Consensus 1 miI~i~G~~gsGKstva~~~~~~-g~~~~~~~~d~ik~~l~ 40 (227)
T PHA02575 1 MLIAISGKKRSGKDTVADFIIEN-YNAVKYQLADPIKEILA 40 (227)
T ss_pred CEEEEeCCCCCCHHHHHHHHHhc-CCcEEEehhHHHHHHHH
Confidence 47899999999999999999766 5555 999999987553
No 194
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.0014 Score=64.02 Aligned_cols=34 Identities=24% Similarity=0.312 Sum_probs=29.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~ 94 (273)
..|+-|++.||||+||||+|+.||.+-+..++++
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsv 499 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSV 499 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhhhcCCeeec
Confidence 3466789999999999999999999998888775
No 195
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.47 E-value=9.3e-05 Score=58.73 Aligned_cols=28 Identities=39% Similarity=0.602 Sum_probs=25.2
Q ss_pred EEEEcCCCCChhHHHHHHHHHhCCCeec
Q 024067 66 WVLIGDPGVKKHVYADNLSKLLEVPHIS 93 (273)
Q Consensus 66 Ivi~G~pGSGKsT~a~~La~~~g~~~is 93 (273)
|+|.|+||+|||++++.|++.++.+++.
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~~~~~ 29 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGRPVIR 29 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcceEE
Confidence 7899999999999999999999876643
No 196
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.47 E-value=0.00099 Score=64.16 Aligned_cols=32 Identities=19% Similarity=0.333 Sum_probs=28.4
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~ 94 (273)
++-|+|.||||+|||++|+.+|+.++++++.+
T Consensus 259 pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l 290 (489)
T CHL00195 259 PRGLLLVGIQGTGKSLTAKAIANDWQLPLLRL 290 (489)
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 45688999999999999999999999887664
No 197
>PRK14974 cell division protein FtsY; Provisional
Probab=97.41 E-value=0.00038 Score=63.89 Aligned_cols=27 Identities=26% Similarity=0.306 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.++..|+|+|+||+||||++..|+..+
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l 164 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYL 164 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 357889999999999999999998776
No 198
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.41 E-value=0.0018 Score=57.72 Aligned_cols=27 Identities=22% Similarity=0.286 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.++..|+++|++|+||||.+..||..+
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l 96 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKL 96 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 356788899999999999999999877
No 199
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.00011 Score=66.11 Aligned_cols=29 Identities=24% Similarity=0.355 Sum_probs=25.6
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCe
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPH 91 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~ 91 (273)
...|++.||||+||||+|+.||+++.+..
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~ 205 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRT 205 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeee
Confidence 45789999999999999999999997653
No 200
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.38 E-value=0.0022 Score=52.76 Aligned_cols=31 Identities=29% Similarity=0.322 Sum_probs=24.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh---C--CCeechh
Q 024067 65 QWVLIGDPGVKKHVYADNLSKLL---E--VPHISMG 95 (273)
Q Consensus 65 ~Ivi~G~pGSGKsT~a~~La~~~---g--~~~is~~ 95 (273)
.+++.|+||+||||++..++..+ | +.+++.|
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 47899999999999999999876 3 3456654
No 201
>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family. Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.
Probab=97.35 E-value=0.0079 Score=53.31 Aligned_cols=187 Identities=13% Similarity=0.006 Sum_probs=91.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeech---hHHHHHHccCCChHHHHHHHHHHCCCC--CCHHHHHHHHHHHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM---GSLVRQELSPRSALYKQIANAVNEGKL--VPEDVIFALLSKRLE 136 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~---~dllr~~~~~~~~~g~~i~~~l~~g~~--~~~~~~~~ll~~~l~ 136 (273)
.+++|+|.|..||||+.+.++|.+.++=.++.+ +.--.++. ....++.--+.+=..|.. ........++.+++.
T Consensus 55 ~~vlIv~eG~DaAGKG~~I~~l~~~lDPRg~~V~s~~~Pt~eE~-~~p~lWRfw~~lP~~G~i~IF~RSWY~~vl~~rv~ 133 (264)
T TIGR03709 55 RSLLLVLQAMDAAGKDGTIRHVMSGVNPQGCQVTSFKAPSAEEL-DHDFLWRIHKALPERGEIGIFNRSHYEDVLVVRVH 133 (264)
T ss_pred CcEEEEEECCCCCCchHHHHHHHHhcCCCeeEEEeCCCCCHHHH-cCchHHHHHHhCCCCCeEEEEcCccccchhhhhhc
Confidence 589999999999999999999999996444432 11100100 000111111110011211 011111222222221
Q ss_pred hcccCCcceEEEe-CCCCCHHHHHHHHhh----CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHH
Q 024067 137 EGYYRGESGFILD-GIPRTRIQAEILDQI----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAAS 211 (273)
Q Consensus 137 ~~~~~~~~g~IlD-g~P~~~~qa~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e 211 (273)
.. + -+ .+.+...+...++.. +..-+-++|+++.++..+|+..|..++.+. . +.....-
T Consensus 134 g~-~-------~~~~~~~~~~~I~~FEr~L~~~G~~IiKffLhIsk~eQ~kRl~~r~~~p~k~--------W-k~s~~D~ 196 (264)
T TIGR03709 134 GL-I-------PKAIWERRYEDINDFERYLTENGTTILKFFLHISKEEQKKRFLARLDDPTKN--------W-KFSPADL 196 (264)
T ss_pred CC-C-------CHHHHHHHHHHHHHHHHHHHHCCcEEEEEEEeCCHHHHHHHHHHHhcCCccc--------c-cCCHHHH
Confidence 10 0 00 011111222223222 233367899999999999999887655221 0 1111112
Q ss_pred HHHHHHHHHHHhhHHHHHHHH-hcCcEEEEeCCCC---hhHHHHHHHHHHHhcCCCCCC
Q 024067 212 AWKEKFRIYAEQGKSLEDYYS-KQRKLLNFQVAAA---PGETWQGLLSALHLQHMNAVS 266 (273)
Q Consensus 212 ~~~~rl~~y~~~~~~l~~~y~-~~~~~~~id~~~s---~~ev~~~I~~~l~~~~~~~~~ 266 (273)
...++...|.+..+..+..=. ...-|+.|+++.. --.|.+-|++.|....+.-+.
T Consensus 197 ~~~~~yd~y~~a~e~~l~~T~t~~APW~iI~a~dk~~a~l~v~~~ll~~l~~~~~~~p~ 255 (264)
T TIGR03709 197 KERAYWDDYMEAYEDALTATSTKHAPWYVVPADDKWFRRLAVAEILLDALESLDLKYPE 255 (264)
T ss_pred HHHHhHHHHHHHHHHHHHhcCCCCCCeEEEcCCCHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 223445555554443332111 1236999998653 445777888888876664333
No 202
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.35 E-value=0.0014 Score=62.27 Aligned_cols=27 Identities=22% Similarity=0.309 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.+|..|+|+|++|+||||++..||..+
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L 119 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYF 119 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 357889999999999999999999877
No 203
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.34 E-value=0.00088 Score=60.12 Aligned_cols=26 Identities=23% Similarity=0.450 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.+..++|.||||+||||+|+.+++.+
T Consensus 57 ~~~~vll~G~pGTGKT~lA~~ia~~l 82 (284)
T TIGR02880 57 PTLHMSFTGNPGTGKTTVALRMAQIL 82 (284)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHH
Confidence 35579999999999999998888876
No 204
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.32 E-value=0.0002 Score=65.96 Aligned_cols=28 Identities=29% Similarity=0.271 Sum_probs=25.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCC
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEV 89 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~ 89 (273)
+...++|.|||||||||+++.|++.++.
T Consensus 77 ~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 77 RKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4567889999999999999999999965
No 205
>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).
Probab=97.31 E-value=0.012 Score=51.11 Aligned_cols=179 Identities=9% Similarity=0.017 Sum_probs=86.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeech---hHHHHHHccCCChHHHHHHHHHHCCCC--CCHHHHHHHHHHHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM---GSLVRQELSPRSALYKQIANAVNEGKL--VPEDVIFALLSKRLE 136 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~---~dllr~~~~~~~~~g~~i~~~l~~g~~--~~~~~~~~ll~~~l~ 136 (273)
.+++|+|.|..||||+.+.+.|.+.++=.++.+ +.--.++.. ...++.--+.+=..|.. .........+..++.
T Consensus 30 ~~vlIv~eG~DaAGKg~~I~~l~~~lDPRg~~v~~~~~pt~eE~~-~p~lwRfw~~lP~~G~i~IF~rSwY~~~lv~rv~ 108 (230)
T TIGR03707 30 ARVVIVFEGRDAAGKGGTIKRITEHLNPRGARVVALPKPSDRERT-QWYFQRYVQHLPAAGEIVLFDRSWYNRAGVERVM 108 (230)
T ss_pred CCEEEEEeCCCCCCchHHHHHHHHhcCCCeeEEEeCCCCCHHHHc-ChHHHHHHHhCCCCCeEEEEeCchhhhHHHHHhc
Confidence 689999999999999999999999996444432 211111100 00011110110011211 111122222222222
Q ss_pred hcccCCcceEEEe-CCCCCHHHHHHHHhh----CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHH
Q 024067 137 EGYYRGESGFILD-GIPRTRIQAEILDQI----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAAS 211 (273)
Q Consensus 137 ~~~~~~~~g~IlD-g~P~~~~qa~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e 211 (273)
.. + -+ .+.+...+...+++. +..-+-++|+++.++..+|+..|..++.+. .+.....-
T Consensus 109 ~~-~-------~~~~~~~~~~~I~~FEr~L~~~G~~IlKfflhIsk~eQ~kRl~~r~~~p~k~---------Wk~~~~D~ 171 (230)
T TIGR03707 109 GF-C-------TDEEYEEFLRQVPEFERMLVRDGIHLFKYWLSVSREEQLRRFKARIDDPLKQ---------WKLSPMDL 171 (230)
T ss_pred CC-C-------CHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHhcCCccc---------ccCCHHHH
Confidence 10 0 00 011112222233322 233467899999999999999988655221 01111111
Q ss_pred HHHHHHHHHHHhhHHHHHHHHhc----CcEEEEeCCCC---hhHHHHHHHHHHHhcC
Q 024067 212 AWKEKFRIYAEQGKSLEDYYSKQ----RKLLNFQVAAA---PGETWQGLLSALHLQH 261 (273)
Q Consensus 212 ~~~~rl~~y~~~~~~l~~~y~~~----~~~~~id~~~s---~~ev~~~I~~~l~~~~ 261 (273)
.-.++...|.+..+. .++.. .-|+.|+++.. --.|.+-|++.|....
T Consensus 172 ~~~~~yd~y~~a~e~---~l~~T~t~~APW~iI~a~dk~~a~l~v~~~i~~~l~~~~ 225 (230)
T TIGR03707 172 ASLDRWDDYSRAKDE---MFARTDTPEAPWTVVRSDDKKRARLNAIRHILSRLDYEG 225 (230)
T ss_pred HHHHhHHHHHHHHHH---HHHhcCCCCCCeEEEcCCCHHHHHHHHHHHHHHhCCCcC
Confidence 223345555544433 33332 35999998653 2335555565555443
No 206
>KOG0707 consensus Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.31 E-value=0.0036 Score=53.90 Aligned_cols=168 Identities=15% Similarity=0.078 Sum_probs=84.4
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCC-CeechhHHHHHHccC---CCh----HHHHHHHHHHCCCCCCHHHH-------
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEV-PHISMGSLVRQELSP---RSA----LYKQIANAVNEGKLVPEDVI------- 127 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~-~~is~~dllr~~~~~---~~~----~g~~i~~~l~~g~~~~~~~~------- 127 (273)
..-|+|.||.|+||+|+.++|-++++. ..+++..-.+.-... +.. .-.....++.++..+.....
T Consensus 37 ~~~ivl~gpsg~gk~tll~~l~ee~~~~~~fsvS~ttr~pr~~E~~g~~y~fs~~~~~~s~i~~~~fiE~a~~~gn~yGt 116 (231)
T KOG0707|consen 37 FKPIVLSGPSGVGKSTLLKRLREELGGMFGFSVSHTTRTPRAGEVHGKHYHFSTTEEFLSMIKNNEFIEFATFSGNKYGT 116 (231)
T ss_pred CceEEEeCCCCcchhHHHHHHHHHcCCcceEEecCCCCCCCcccccCCcceeccHHHHHHHhhhhhhhhhhhhhcccCCc
Confidence 367899999999999999999999974 333332222210000 000 00122222222222111100
Q ss_pred -HHHHHHHHHhcccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEE--ccCHHHHHHHHhcCCcCCCcccccccCCCCC
Q 024067 128 -FALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINF--KSIEDQLVKRNLESEAFSPHKEFLRLGGARF 204 (273)
Q Consensus 128 -~~ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L--~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~ 204 (273)
...++. +.. .++.+++|-.-....+.. ...+|.++.+ -++...+.+|+..|..
T Consensus 117 si~av~~-~~~----~gk~~ildId~qg~~~i~----~~~~~~i~i~~~pps~~~~e~rl~~rgt--------------- 172 (231)
T KOG0707|consen 117 SIAAVQR-LML----SGKVCILDIDLQGVQPIR----ATSLDAIYIFIKPPSIKILEERLRARGT--------------- 172 (231)
T ss_pred hHHHHHH-HHh----cCCcceeehhhcCceeee----cCCCceEEEEecCCcchhHHHHhhccCc---------------
Confidence 011111 111 235556664322211111 1245544333 3677889999998853
Q ss_pred CCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhc
Q 024067 205 SAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQ 260 (273)
Q Consensus 205 ~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~ 260 (273)
++++.+.+|+..-+......++-+.. -+.+.++..+++..+++..++...
T Consensus 173 ---e~~~~l~~r~~sa~~e~~~~~~~g~~---d~~~~ns~~lee~~kel~~~~~~~ 222 (231)
T KOG0707|consen 173 ---ETEESLLKRLKSAEEEFEILENSGSF---DLVIVNSDRLEEAYKELEIFISSD 222 (231)
T ss_pred ---chHHHHHHHHHhhhhhhccccCCccc---cceecCCCchhhhhhhhhhhhhHH
Confidence 34667788887444444433321111 123333477888888888776544
No 207
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.29 E-value=0.0002 Score=65.20 Aligned_cols=31 Identities=16% Similarity=0.248 Sum_probs=27.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeec
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHIS 93 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is 93 (273)
+..|+|.|+||+||||+++.||+.+|++++.
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~r 94 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVR 94 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEE
Confidence 4569999999999999999999999988764
No 208
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=97.27 E-value=0.00028 Score=66.31 Aligned_cols=34 Identities=12% Similarity=0.169 Sum_probs=29.3
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhCCCeec
Q 024067 60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHIS 93 (273)
Q Consensus 60 ~~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is 93 (273)
+....+|+|+|++||||||+++.|++.+|...+.
T Consensus 216 ~~~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~ 249 (399)
T PRK08099 216 PFFVRTVAILGGESSGKSTLVNKLANIFNTTSAW 249 (399)
T ss_pred hCCCcEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Confidence 3446789999999999999999999999987653
No 209
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.27 E-value=0.002 Score=60.89 Aligned_cols=27 Identities=15% Similarity=0.176 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.++..|.++|++||||||.+..||..+
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l 124 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYY 124 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 346789999999999999999999877
No 210
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.27 E-value=0.00031 Score=54.70 Aligned_cols=31 Identities=26% Similarity=0.421 Sum_probs=25.7
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh---CCCeec
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLL---EVPHIS 93 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~---g~~~is 93 (273)
+..++|.|+||+||||+++.+++.+ +..++.
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~ 52 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLY 52 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEE
Confidence 4578899999999999999999988 554443
No 211
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.0014 Score=60.59 Aligned_cols=47 Identities=15% Similarity=0.186 Sum_probs=35.5
Q ss_pred ccchhcCCCCCCCCCCeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067 48 EPMLRLDSAGSPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (273)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~ 94 (273)
-|+.+-+.|......=+-|++.||||+|||-+|+.+|.+-|..++++
T Consensus 230 lPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNV 276 (491)
T KOG0738|consen 230 LPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNV 276 (491)
T ss_pred hhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEe
Confidence 56665566655542225588999999999999999999999776553
No 212
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.26 E-value=0.00025 Score=58.68 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh
Q 024067 65 QWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 65 ~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
+|+|+|+||+||||+.+++.+.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 58999999999999999999998
No 213
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.25 E-value=0.0037 Score=55.05 Aligned_cols=32 Identities=25% Similarity=0.400 Sum_probs=30.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~ 94 (273)
|+.|++.||||+|||..|+.||.+.+++.+.+
T Consensus 151 PknVLFyGppGTGKTm~Akalane~kvp~l~v 182 (368)
T COG1223 151 PKNVLFYGPPGTGKTMMAKALANEAKVPLLLV 182 (368)
T ss_pred cceeEEECCCCccHHHHHHHHhcccCCceEEe
Confidence 78899999999999999999999999998865
No 214
>PRK12377 putative replication protein; Provisional
Probab=97.25 E-value=0.0047 Score=54.34 Aligned_cols=36 Identities=22% Similarity=0.412 Sum_probs=29.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHh---C--CCeechhHHHH
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLL---E--VPHISMGSLVR 99 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~---g--~~~is~~dllr 99 (273)
..++|.|+||+|||+++..|+..+ | +.++++.+++.
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~ 142 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMS 142 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHH
Confidence 468899999999999999999987 2 45677766665
No 215
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.25 E-value=0.00036 Score=55.53 Aligned_cols=29 Identities=28% Similarity=0.312 Sum_probs=26.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~ 90 (273)
.+..|+|.|+.|+||||+++.+++.+|+.
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 46689999999999999999999999864
No 216
>PRK09087 hypothetical protein; Validated
Probab=97.24 E-value=0.0021 Score=55.72 Aligned_cols=37 Identities=19% Similarity=0.063 Sum_probs=31.6
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHH
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVR 99 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr 99 (273)
...++|.|++|||||++++.+++..++.+|+.+++..
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~~~ 80 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSDALLIHPNEIGS 80 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcCCEEecHHHcch
Confidence 3458999999999999999999999999998864443
No 217
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.23 E-value=0.0043 Score=58.81 Aligned_cols=35 Identities=17% Similarity=0.218 Sum_probs=27.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh----C--CCeechh
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLL----E--VPHISMG 95 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~----g--~~~is~~ 95 (273)
.+|..|+++|++||||||++..||..+ | +..++.|
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D 137 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACD 137 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 357789999999999999999998774 2 3456664
No 218
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=97.20 E-value=0.0035 Score=53.92 Aligned_cols=25 Identities=28% Similarity=0.150 Sum_probs=22.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
++.|+|+|-|.|||||.|..|.+.+
T Consensus 1 MpLVvi~G~P~SGKstrA~~L~~~l 25 (281)
T KOG3062|consen 1 MPLVVICGLPCSGKSTRAVELREAL 25 (281)
T ss_pred CCeEEEeCCCCCCchhHHHHHHHHH
Confidence 4579999999999999999999887
No 219
>PRK10867 signal recognition particle protein; Provisional
Probab=97.17 E-value=0.0064 Score=57.73 Aligned_cols=35 Identities=23% Similarity=0.316 Sum_probs=27.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh----C--CCeechh
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLL----E--VPHISMG 95 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~----g--~~~is~~ 95 (273)
.++..|+++|++||||||.+..||..+ | +..|+.|
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D 138 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAAD 138 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEcc
Confidence 346789999999999999888888755 3 3456664
No 220
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=97.17 E-value=0.0088 Score=49.11 Aligned_cols=33 Identities=27% Similarity=0.270 Sum_probs=29.0
Q ss_pred EEEEcCCCCChhHHHHHHHHHhC-CCeechhHHH
Q 024067 66 WVLIGDPGVKKHVYADNLSKLLE-VPHISMGSLV 98 (273)
Q Consensus 66 Ivi~G~pGSGKsT~a~~La~~~g-~~~is~~dll 98 (273)
|+=++.+|+||||++..|++.|| +-||-.|++-
T Consensus 2 lvPIAtiGCGKTTva~aL~~LFg~wgHvQnDnI~ 35 (168)
T PF08303_consen 2 LVPIATIGCGKTTVALALSNLFGEWGHVQNDNIT 35 (168)
T ss_pred EeeecCCCcCHHHHHHHHHHHcCCCCccccCCCC
Confidence 44589999999999999999999 9999888763
No 221
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=97.16 E-value=0.00045 Score=62.34 Aligned_cols=37 Identities=27% Similarity=0.209 Sum_probs=33.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLV 98 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dll 98 (273)
.+..|+|+||.+||||-+|-.||+++|.++||+|.+-
T Consensus 2 ~~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQ 38 (308)
T COG0324 2 KPKLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQ 38 (308)
T ss_pred CccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchhh
Confidence 3568999999999999999999999999999988654
No 222
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.15 E-value=0.00091 Score=55.43 Aligned_cols=30 Identities=23% Similarity=0.286 Sum_probs=24.0
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhC--CCeech
Q 024067 65 QWVLIGDPGVKKHVYADNLSKLLE--VPHISM 94 (273)
Q Consensus 65 ~Ivi~G~pGSGKsT~a~~La~~~g--~~~is~ 94 (273)
.++|+|++|||||++|..++...+ +.|+++
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~~~~~~~y~at 32 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAELGGPVTYIAT 32 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCeEEEEc
Confidence 368999999999999999998765 344543
No 223
>PF13173 AAA_14: AAA domain
Probab=97.15 E-value=0.00045 Score=54.25 Aligned_cols=37 Identities=24% Similarity=0.214 Sum_probs=30.2
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhC----CCeechhHHHH
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLE----VPHISMGSLVR 99 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g----~~~is~~dllr 99 (273)
...++|.||.|+||||+++.+++.+. +.+++.++.-.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~ 42 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRD 42 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHH
Confidence 35788999999999999999998875 67777765443
No 224
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.14 E-value=0.00041 Score=65.03 Aligned_cols=38 Identities=24% Similarity=0.298 Sum_probs=30.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeec--hhHHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHIS--MGSLVR 99 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is--~~dllr 99 (273)
.+..|+|.||||+|||++|+.+++.++.+++. ..+++.
T Consensus 164 ~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~ 203 (389)
T PRK03992 164 PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQ 203 (389)
T ss_pred CCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhH
Confidence 35568999999999999999999999876554 444443
No 225
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=97.13 E-value=0.00046 Score=63.16 Aligned_cols=30 Identities=10% Similarity=0.204 Sum_probs=27.7
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCee
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHI 92 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~i 92 (273)
+.+|+|+|+||+||||+++.|+..++.+++
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~v 191 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFNTTSA 191 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCEE
Confidence 568999999999999999999999998874
No 226
>PF13245 AAA_19: Part of AAA domain
Probab=97.13 E-value=0.0005 Score=49.24 Aligned_cols=25 Identities=32% Similarity=0.551 Sum_probs=17.9
Q ss_pred CeEEEEEcCCCCChh-HHHHHHHHHh
Q 024067 63 GVQWVLIGDPGVKKH-VYADNLSKLL 87 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKs-T~a~~La~~~ 87 (273)
....+|.|||||||| |++..++..+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 345678999999999 5555555544
No 227
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.13 E-value=0.00063 Score=62.96 Aligned_cols=33 Identities=18% Similarity=0.227 Sum_probs=27.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~ 94 (273)
...-.++.||||+||||+|+.||+..+..+...
T Consensus 47 ~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~ 79 (436)
T COG2256 47 HLHSMILWGPPGTGKTTLARLIAGTTNAAFEAL 79 (436)
T ss_pred CCceeEEECCCCCCHHHHHHHHHHhhCCceEEe
Confidence 344577899999999999999999998876543
No 228
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.12 E-value=0.0021 Score=60.18 Aligned_cols=27 Identities=22% Similarity=0.423 Sum_probs=23.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLE 88 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g 88 (273)
++..|+++||.|+||||.+..||..+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999998763
No 229
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=97.11 E-value=0.00043 Score=65.31 Aligned_cols=33 Identities=30% Similarity=0.512 Sum_probs=28.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeechh
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMG 95 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~ 95 (273)
...|+|.||||+|||++|+.||+.++++++.++
T Consensus 108 ~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id 140 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLAQTLARILDVPFAIAD 140 (412)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCceecc
Confidence 357889999999999999999999998877653
No 230
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=97.11 E-value=0.00039 Score=59.38 Aligned_cols=122 Identities=16% Similarity=0.204 Sum_probs=59.2
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHH-HHccCCC--hHHHHH---------HHHHHCCCCCCHHHHHHH
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVR-QELSPRS--ALYKQI---------ANAVNEGKLVPEDVIFAL 130 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr-~~~~~~~--~~g~~i---------~~~l~~g~~~~~~~~~~l 130 (273)
+..++|.||+|+|||.+|-.||+++|.++|+.|.+.- ..+.-++ +.-.++ ...+..|. ++.+.....
T Consensus 1 M~v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~~el~~~~RiyL~~r~l~~G~-i~a~ea~~~ 79 (233)
T PF01745_consen 1 MKVYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTPSELKGTRRIYLDDRPLSDGI-INAEEAHER 79 (233)
T ss_dssp -EEEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---SGGGTT-EEEES----GGG-S---HHHHHHH
T ss_pred CcEEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCHHHHcccceeeeccccccCCC-cCHHHHHHH
Confidence 3568899999999999999999999999999865432 1111111 100011 12345565 344445555
Q ss_pred HHHHHHhcccCCcceEEEeCCCCCHHHHHHHHhhC-CC--ceEEEEccCHHH-HHHHHhcC
Q 024067 131 LSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIV-DV--DLVINFKSIEDQ-LVKRNLES 187 (273)
Q Consensus 131 l~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~-~~--d~vI~L~~~~e~-l~~Rl~~R 187 (273)
+...+.... .+.++|+.|---+....-.-+... .+ -.+..+.++++. -+.|...|
T Consensus 80 Li~~v~~~~--~~~~~IlEGGSISLl~~m~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~R 138 (233)
T PF01745_consen 80 LISEVNSYS--AHGGLILEGGSISLLNCMAQDPYWSLDFRWHIRRLRLPDEEVFMARAKRR 138 (233)
T ss_dssp HHHHHHTTT--TSSEEEEEE--HHHHHHHHH-TTTSSSSEEEEEE-----HHHHHHHHHHH
T ss_pred HHHHHHhcc--ccCceEEeCchHHHHHHHHhcccccCCCeEEEEEEECCChHHHHHHHHHH
Confidence 556666542 378999998643333222112222 22 257778887754 44455444
No 231
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.10 E-value=0.0014 Score=59.84 Aligned_cols=27 Identities=19% Similarity=0.294 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.++..|.|+||+||||||++..||..+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 357789999999999999999999887
No 232
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.08 E-value=0.0005 Score=63.51 Aligned_cols=38 Identities=18% Similarity=0.189 Sum_probs=30.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCe--echhHHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPH--ISMGSLVR 99 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~--is~~dllr 99 (273)
.|..+.|.||||+|||.+|+.+++++|+++ ++.++|+.
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~s 186 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELES 186 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhc
Confidence 356677899999999999999999999865 45555554
No 233
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.00036 Score=68.64 Aligned_cols=39 Identities=26% Similarity=0.478 Sum_probs=32.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC--CCeechhHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE--VPHISMGSLVR 99 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g--~~~is~~dllr 99 (273)
.+|++++|.||||.|||++++.+|+.+| |..+|+|.+--
T Consensus 436 ~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tD 476 (906)
T KOG2004|consen 436 VQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTD 476 (906)
T ss_pred CCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEecccccc
Confidence 3689999999999999999999999997 55667665543
No 234
>PRK08116 hypothetical protein; Validated
Probab=97.06 E-value=0.0082 Score=53.43 Aligned_cols=37 Identities=24% Similarity=0.320 Sum_probs=29.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh-----CCCeechhHHHH
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMGSLVR 99 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~-----g~~~is~~dllr 99 (273)
+.-++|.|+||+|||.++..+++.+ .+.++++.+++.
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~ 155 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLN 155 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHH
Confidence 3458899999999999999999976 345677777665
No 235
>PRK05973 replicative DNA helicase; Provisional
Probab=97.06 E-value=0.001 Score=58.11 Aligned_cols=67 Identities=18% Similarity=0.146 Sum_probs=41.4
Q ss_pred hhhchhhhhhccCCCcchhhcccCCC--ccchhcCCCCCCCCCCeEEEEEcCCCCChhHHHHHHHHHh---C--CCeech
Q 024067 22 RAYGSAAAAQLQYDYDEECDLHGQAS--EPMLRLDSAGSPPRRGVQWVLIGDPGVKKHVYADNLSKLL---E--VPHISM 94 (273)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~Ivi~G~pGSGKsT~a~~La~~~---g--~~~is~ 94 (273)
...+..|+.+ .|. +++.+....+ .|.. +..+.- .++..++|.|+||+|||+++..++... | +.+++.
T Consensus 27 ~~~~~~a~~~-g~~--~w~~~~~~~~~~~p~~--~l~GGl-~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSl 100 (237)
T PRK05973 27 EALDRIAAEE-GFS--SWSLLAAKAAATTPAE--ELFSQL-KPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTL 100 (237)
T ss_pred HHHHHHHHHh-ccc--hHHHHHHhccCCCCHH--HhcCCC-CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEE
Confidence 4445555544 433 5555543222 4444 343433 377889999999999999999887754 3 345654
No 236
>PRK06620 hypothetical protein; Validated
Probab=97.06 E-value=0.002 Score=55.48 Aligned_cols=30 Identities=13% Similarity=0.098 Sum_probs=25.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCeec
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHIS 93 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is 93 (273)
..++|.||||||||++++.+++..+..+++
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~ 74 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK 74 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc
Confidence 457899999999999999999988865554
No 237
>PLN02796 D-glycerate 3-kinase
Probab=97.04 E-value=0.00055 Score=62.78 Aligned_cols=37 Identities=14% Similarity=0.128 Sum_probs=31.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC-----CCeechhHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLV 98 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g-----~~~is~~dll 98 (273)
++.+|.|.|++||||||+++.|...+. ...|++|++.
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfY 140 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFY 140 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcc
Confidence 578899999999999999999999884 3457777765
No 238
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.04 E-value=0.00065 Score=63.04 Aligned_cols=32 Identities=22% Similarity=0.317 Sum_probs=27.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~ 94 (273)
+.-++|.||||+|||++++.+++.++.+++.+
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~l~~~~~~v 187 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHETNATFIRV 187 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhCCCCEEec
Confidence 45689999999999999999999998776544
No 239
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.00054 Score=67.48 Aligned_cols=36 Identities=33% Similarity=0.541 Sum_probs=30.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCe--echhH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPH--ISMGS 96 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~--is~~d 96 (273)
-+++++||.||||.|||++++.+|+.+|-.+ +|.|.
T Consensus 348 ~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGG 385 (782)
T COG0466 348 LKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGG 385 (782)
T ss_pred CCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCc
Confidence 4678999999999999999999999997554 55544
No 240
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.01 E-value=0.00068 Score=63.70 Aligned_cols=33 Identities=21% Similarity=0.292 Sum_probs=28.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~ 94 (273)
.|.-|+|.||||+|||++++.+|...+.+++..
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i 210 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRV 210 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEE
Confidence 356688999999999999999999998877654
No 241
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=97.00 E-value=0.00062 Score=64.12 Aligned_cols=32 Identities=31% Similarity=0.508 Sum_probs=28.1
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~ 94 (273)
...|+|.||||+|||++|+.||+.++++++.+
T Consensus 116 ~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~ 147 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLAQTLARILNVPFAIA 147 (413)
T ss_pred CceEEEECCCCcCHHHHHHHHHHhcCCCeEEe
Confidence 35799999999999999999999999887643
No 242
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.00 E-value=0.00079 Score=60.61 Aligned_cols=30 Identities=23% Similarity=0.289 Sum_probs=25.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCe
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPH 91 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~ 91 (273)
.+..++|.||||+|||++++.+++.++...
T Consensus 29 ~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~ 58 (305)
T TIGR00635 29 ALDHLLLYGPPGLGKTTLAHIIANEMGVNL 58 (305)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 345688999999999999999999998653
No 243
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.00 E-value=0.00066 Score=57.60 Aligned_cols=26 Identities=27% Similarity=0.308 Sum_probs=23.6
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhC
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLE 88 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g 88 (273)
|..|+|+||+|+||||.+.+||.++.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~ 26 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLK 26 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHh
Confidence 56899999999999999999999883
No 244
>PF05729 NACHT: NACHT domain
Probab=96.97 E-value=0.00071 Score=54.49 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh
Q 024067 65 QWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 65 ~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.++|.|+||+||||+++.++..+
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHH
Confidence 57899999999999999999887
No 245
>PRK04328 hypothetical protein; Provisional
Probab=96.96 E-value=0.0016 Score=57.34 Aligned_cols=33 Identities=15% Similarity=0.194 Sum_probs=26.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh-----CCCeech
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISM 94 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~-----g~~~is~ 94 (273)
++-.++|.|+||+|||++|..++... .+.++++
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 67889999999999999999876542 2456665
No 246
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=96.96 E-value=0.033 Score=53.62 Aligned_cols=177 Identities=14% Similarity=0.099 Sum_probs=85.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCC---eechhHHHHHHccCCChHHHHHHHHHHCCCC--CCHHHHHHHHHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVP---HISMGSLVRQELSPRSALYKQIANAVNEGKL--VPEDVIFALLSKRL 135 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~---~is~~dllr~~~~~~~~~g~~i~~~l~~g~~--~~~~~~~~ll~~~l 135 (273)
..++.|+|.|..||||+++.++|.+.++-. +.++..=-.++.. ..-++.--+.+=..|.. ........++.+++
T Consensus 38 ~~~vlIv~eG~DaaGKg~~I~~l~~~ldprg~~v~~~~~P~~eE~~-~~flwRfw~~lP~~G~I~IFdRSWY~~vlverv 116 (493)
T TIGR03708 38 GFPVIILIEGWDGAGKGETINLLNEWMDPRGIETHAFGRPSDEERE-RPPMWRFWRRLPPKGKIGIFFGSWYTRPLIERL 116 (493)
T ss_pred CCeEEEEEeCCCCCChHHHHHHHHHHhCcCccEEEeCCCCCHHHhc-CcHHHHHHHhCCCCCeEEEEcCcccchhhHHHh
Confidence 468999999999999999999999999543 3332111001100 00011111111011211 11112222222222
Q ss_pred HhcccCCcceEEEe-CCCCCHHHHHHHHhh----CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcH
Q 024067 136 EEGYYRGESGFILD-GIPRTRIQAEILDQI----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAA 210 (273)
Q Consensus 136 ~~~~~~~~~g~IlD-g~P~~~~qa~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~ 210 (273)
... | -+ .+.+...+...++.. +..-+-++|+++.++..+|+..|..++...= +. ++
T Consensus 117 ~g~-~-------~~~~~~~~~~~I~~FE~~L~~~G~~IlKffLhIsk~EQ~kRl~~r~~~P~k~W---------K~--s~ 177 (493)
T TIGR03708 117 EGR-I-------DEAKLDSHIEDINRFERMLADDGALILKFWLHLSKKQQKERLKKLEKDPETRW---------RV--TP 177 (493)
T ss_pred cCC-C-------CHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHhcCCcccc---------CC--CH
Confidence 210 0 00 011111222233322 2334688999999999999999986552211 11 22
Q ss_pred HHHH--HHHHHHHHhhHHHHHHHHhc----CcEEEEeCCCC---hhHHHHHHHHHHHhc
Q 024067 211 SAWK--EKFRIYAEQGKSLEDYYSKQ----RKLLNFQVAAA---PGETWQGLLSALHLQ 260 (273)
Q Consensus 211 e~~~--~rl~~y~~~~~~l~~~y~~~----~~~~~id~~~s---~~ev~~~I~~~l~~~ 260 (273)
+.+. ++...|....+ +.+... .-|+.|+++.- --.|.+.|+..|...
T Consensus 178 ~D~~~r~~wd~Y~~a~e---~ml~~T~t~~APW~vI~addK~~arl~v~~~il~~L~~~ 233 (493)
T TIGR03708 178 EDWKQLKVYDRYRKLAE---RMLRYTSTPYAPWTVVEGEDDRYRSLTVGRTLLAAIRAR 233 (493)
T ss_pred HHHHHHHhHHHHHHHHH---HHHHhcCCCCCCeEEEcCCCHHHHHHHHHHHHHHHHHHH
Confidence 2333 34455554433 334333 25999998753 334555555555543
No 247
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.95 E-value=0.0018 Score=56.37 Aligned_cols=34 Identities=15% Similarity=0.170 Sum_probs=26.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh---C--CCeechh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL---E--VPHISMG 95 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~---g--~~~is~~ 95 (273)
++..++|.|+||||||++|.+++... | +.+++++
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~e 58 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALE 58 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEee
Confidence 78899999999999999998876542 3 4566653
No 248
>PHA02244 ATPase-like protein
Probab=96.95 E-value=0.00065 Score=62.84 Aligned_cols=36 Identities=19% Similarity=0.372 Sum_probs=31.2
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHH
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLV 98 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dll 98 (273)
+..|+|.||||+|||++++.|+..++.+++.+..++
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~ 154 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIM 154 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecCh
Confidence 456888999999999999999999999998776543
No 249
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.94 E-value=0.00043 Score=54.59 Aligned_cols=29 Identities=31% Similarity=0.416 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCeec
Q 024067 65 QWVLIGDPGVKKHVYADNLSKLLEVPHIS 93 (273)
Q Consensus 65 ~Ivi~G~pGSGKsT~a~~La~~~g~~~is 93 (273)
+++|.|+||.||||+++.||+.+|..+..
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~R 29 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKR 29 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEE
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeE
Confidence 47899999999999999999999976654
No 250
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=96.92 E-value=0.0007 Score=54.43 Aligned_cols=24 Identities=29% Similarity=0.304 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHH
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
+++|+|+|+.||||||+++.|-..
T Consensus 1 MkrimliG~~g~GKTTL~q~L~~~ 24 (143)
T PF10662_consen 1 MKRIMLIGPSGSGKTTLAQALNGE 24 (143)
T ss_pred CceEEEECCCCCCHHHHHHHHcCC
Confidence 468999999999999999999764
No 251
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.01 Score=54.42 Aligned_cols=46 Identities=22% Similarity=0.312 Sum_probs=36.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeec--hhHHHHHHccCCChH
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHIS--MGSLVRQELSPRSAL 108 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is--~~dllr~~~~~~~~~ 108 (273)
|+=|++.||||+|||-+|+.+|.+.+..+|. ..+|+++.+-.+..+
T Consensus 185 PKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRl 232 (406)
T COG1222 185 PKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARL 232 (406)
T ss_pred CCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHH
Confidence 4457899999999999999999999877765 467887776665544
No 252
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.90 E-value=0.00088 Score=64.73 Aligned_cols=32 Identities=28% Similarity=0.437 Sum_probs=27.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~ 94 (273)
+.-++|.||||+|||++++.||...+++++.+
T Consensus 88 ~~giLL~GppGtGKT~la~alA~~~~~~~~~i 119 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSI 119 (495)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHcCCCeeec
Confidence 44588999999999999999999998877654
No 253
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.90 E-value=0.001 Score=64.48 Aligned_cols=30 Identities=23% Similarity=0.170 Sum_probs=26.7
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCee
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHI 92 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~i 92 (273)
..+++|.|||||||||..+.||+++|+.++
T Consensus 45 ~~iLlLtGP~G~GKtttv~~La~elg~~v~ 74 (519)
T PF03215_consen 45 KRILLLTGPSGCGKTTTVKVLAKELGFEVQ 74 (519)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCeeE
Confidence 447889999999999999999999998665
No 254
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=96.90 E-value=0.00091 Score=59.42 Aligned_cols=30 Identities=27% Similarity=0.300 Sum_probs=26.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCe
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPH 91 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~ 91 (273)
..-++++.||||-||||+|..+|.++|+..
T Consensus 51 ~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~ 80 (332)
T COG2255 51 ALDHVLLFGPPGLGKTTLAHIIANELGVNL 80 (332)
T ss_pred CcCeEEeeCCCCCcHHHHHHHHHHHhcCCe
Confidence 356899999999999999999999998754
No 255
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.89 E-value=0.013 Score=51.39 Aligned_cols=36 Identities=22% Similarity=0.435 Sum_probs=29.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHh---C--CCeechhHHHH
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLL---E--VPHISMGSLVR 99 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~---g--~~~is~~dllr 99 (273)
..++|.|+||+|||+++..|+..+ | +.++++.+++.
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~ 140 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMS 140 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHH
Confidence 368899999999999999999987 2 45667777664
No 256
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.89 E-value=0.0019 Score=55.69 Aligned_cols=34 Identities=24% Similarity=0.233 Sum_probs=26.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh------CCCeechh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL------EVPHISMG 95 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~------g~~~is~~ 95 (273)
++..++|.|+||||||+++.+++... ++.+++++
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~e 57 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFE 57 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEec
Confidence 67889999999999999999876432 34566653
No 257
>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]
Probab=96.88 E-value=0.0084 Score=48.92 Aligned_cols=126 Identities=17% Similarity=0.196 Sum_probs=70.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC--CCeechhHHHHHHccCCC-hHHHH-HH-H-HHHCCCC-CC--H----HHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE--VPHISMGSLVRQELSPRS-ALYKQ-IA-N-AVNEGKL-VP--E----DVI 127 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g--~~~is~~dllr~~~~~~~-~~g~~-i~-~-~l~~g~~-~~--~----~~~ 127 (273)
.++.+|++-|.|-||||++|..+-..+. +-||-+|- +++.+.+.. ..+.- .. . ....|+. ++ . +..
T Consensus 21 ~~griVlLNG~~saGKSSiA~A~Q~~~a~pwmhigiD~-f~e~lpp~~~d~a~g~~~~~~v~~dg~~~v~v~~gpi~e~~ 99 (205)
T COG3896 21 PEGRIVLLNGGSSAGKSSIALAFQDLAAEPWMHIGIDL-FWEALPPEQLDLARGYTWDSAVEADGLEWVTVHPGPILELA 99 (205)
T ss_pred CCceEEEecCCCccchhHHHHHHHHHhhcchhhhhHHH-HHHhCCHHhhccccccccccccccCCceeeEeechhHHHHH
Confidence 4688999999999999999999988874 55666754 444444211 00000 00 0 0011110 10 0 111
Q ss_pred HHHHHHHHHhcccCCcceEEEeCCCCCHHH-HHHHHhhCCC-ceEEEEccCHHHHHHHHhcCC
Q 024067 128 FALLSKRLEEGYYRGESGFILDGIPRTRIQ-AEILDQIVDV-DLVINFKSIEDQLVKRNLESE 188 (273)
Q Consensus 128 ~~ll~~~l~~~~~~~~~g~IlDg~P~~~~q-a~~l~~~~~~-d~vI~L~~~~e~l~~Rl~~R~ 188 (273)
..-....|.. +...+..+|.|.+-.+... .+.++.+..+ ..+|-+.||+|++.+|-..|.
T Consensus 100 ~~~~r~ai~a-~ad~G~~~i~Ddv~~~r~~L~Dc~r~l~g~~v~~VGV~~p~E~~~~Re~rr~ 161 (205)
T COG3896 100 MHSRRRAIRA-YADNGMNVIADDVIWTREWLVDCLRVLEGCRVWMVGVHVPDEEGARRELRRG 161 (205)
T ss_pred HHHHHHHHHH-HhccCcceeehhcccchhhHHHHHHHHhCCceEEEEeeccHHHHHHHHhhcC
Confidence 1111112221 2234677899988776443 3444444444 468889999999998887654
No 258
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.87 E-value=0.0011 Score=65.42 Aligned_cols=41 Identities=20% Similarity=0.228 Sum_probs=32.5
Q ss_pred CCCCCCCCCCeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067 54 DSAGSPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (273)
Q Consensus 54 ~~~~~~~~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~ 94 (273)
+.....+...++.+|+||||.||||+|..+|++-|+.++.+
T Consensus 317 ~~~~s~RP~kKilLL~GppGlGKTTLAHViAkqaGYsVvEI 357 (877)
T KOG1969|consen 317 ELDPSKRPPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEI 357 (877)
T ss_pred ccCccCCCccceEEeecCCCCChhHHHHHHHHhcCceEEEe
Confidence 44444444456777999999999999999999999988754
No 259
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=96.86 E-value=0.0011 Score=60.53 Aligned_cols=30 Identities=23% Similarity=0.265 Sum_probs=26.2
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCee
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHI 92 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~i 92 (273)
+..++|.||||+||||+++.+++.++....
T Consensus 51 ~~~~ll~GppG~GKT~la~~ia~~l~~~~~ 80 (328)
T PRK00080 51 LDHVLLYGPPGLGKTTLANIIANEMGVNIR 80 (328)
T ss_pred CCcEEEECCCCccHHHHHHHHHHHhCCCeE
Confidence 457889999999999999999999987543
No 260
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.86 E-value=0.0011 Score=63.02 Aligned_cols=32 Identities=19% Similarity=0.287 Sum_probs=27.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeec
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHIS 93 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is 93 (273)
.+..++|.||||+|||++++.+|..++.+++.
T Consensus 216 ~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~ 247 (438)
T PTZ00361 216 PPKGVILYGPPGTGKTLLAKAVANETSATFLR 247 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCCEEE
Confidence 34568899999999999999999999877664
No 261
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.86 E-value=0.001 Score=57.01 Aligned_cols=37 Identities=16% Similarity=0.140 Sum_probs=28.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC-----CCeechhHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLV 98 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g-----~~~is~~dll 98 (273)
.+..++|+|+||+|||++++.+++... +.+++..++.
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~ 78 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA 78 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHH
Confidence 456888999999999999999998762 4456654443
No 262
>PRK04195 replication factor C large subunit; Provisional
Probab=96.84 E-value=0.001 Score=64.12 Aligned_cols=32 Identities=28% Similarity=0.326 Sum_probs=28.4
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~ 94 (273)
+..++|.||||+||||+++.|++.+++.++.+
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~~~~iel 70 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYGWEVIEL 70 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 56788999999999999999999999877654
No 263
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.84 E-value=0.00085 Score=51.11 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=20.4
Q ss_pred EEEEcCCCCChhHHHHHHHHHhC
Q 024067 66 WVLIGDPGVKKHVYADNLSKLLE 88 (273)
Q Consensus 66 Ivi~G~pGSGKsT~a~~La~~~g 88 (273)
|.|.|+||+|||++++.|++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999998753
No 264
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=96.81 E-value=0.0011 Score=62.28 Aligned_cols=38 Identities=13% Similarity=0.095 Sum_probs=31.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC-----CCeechhHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLV 98 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g-----~~~is~~dll 98 (273)
.+|.+|.|.|+.||||||+++.|...+. +..|+.|++.
T Consensus 210 ~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfY 252 (460)
T PLN03046 210 IPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFY 252 (460)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCcc
Confidence 3678889999999999999999987763 4567777766
No 265
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.80 E-value=0.0028 Score=55.06 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=20.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
++-.++|.|+||+||||+|.+++..
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~ 47 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYG 47 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5668999999999999998665443
No 266
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=96.80 E-value=0.00075 Score=59.03 Aligned_cols=22 Identities=36% Similarity=0.595 Sum_probs=19.4
Q ss_pred EEcCCCCChhHHHHHHHHHhCC
Q 024067 68 LIGDPGVKKHVYADNLSKLLEV 89 (273)
Q Consensus 68 i~G~pGSGKsT~a~~La~~~g~ 89 (273)
|+||+||||||+++.+.+.+..
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~ 22 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLES 22 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999998854
No 267
>COG3911 Predicted ATPase [General function prediction only]
Probab=96.79 E-value=0.0012 Score=53.18 Aligned_cols=29 Identities=24% Similarity=0.469 Sum_probs=25.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~ 90 (273)
.|+++++|+|.||+||||+...|+.. |+.
T Consensus 7 nR~~~fIltGgpGaGKTtLL~aLa~~-Gfa 35 (183)
T COG3911 7 NRHKRFILTGGPGAGKTTLLAALARA-GFA 35 (183)
T ss_pred ccceEEEEeCCCCCcHHHHHHHHHHc-Cce
Confidence 56788999999999999999999876 653
No 268
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.78 E-value=0.0013 Score=62.05 Aligned_cols=33 Identities=24% Similarity=0.373 Sum_probs=27.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~ 94 (273)
+...++|.||||+||||+++.|++..+..++..
T Consensus 35 ~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l 67 (413)
T PRK13342 35 RLSSMILWGPPGTGKTTLARIIAGATDAPFEAL 67 (413)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 344788899999999999999999998776544
No 269
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.78 E-value=0.017 Score=54.19 Aligned_cols=26 Identities=23% Similarity=0.231 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
++..|+|+||+|+||||.+..||..+
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L 265 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQF 265 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHH
Confidence 45789999999999999999999876
No 270
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=96.78 E-value=0.0015 Score=59.00 Aligned_cols=34 Identities=18% Similarity=0.138 Sum_probs=29.6
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHH
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSL 97 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dl 97 (273)
++.|+|+||.|||||.+|-.||++ +...||.|.+
T Consensus 4 ~~ii~I~GpTasGKS~LAl~LA~~-~~eIIsaDS~ 37 (300)
T PRK14729 4 NKIVFIFGPTAVGKSNILFHFPKG-KAEIINVDSI 37 (300)
T ss_pred CcEEEEECCCccCHHHHHHHHHHh-CCcEEeccHH
Confidence 347999999999999999999999 5589998754
No 271
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=96.77 E-value=0.0013 Score=50.22 Aligned_cols=23 Identities=30% Similarity=0.367 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh
Q 024067 65 QWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 65 ~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
+|+|+|++||||||+.++|+...
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999998754
No 272
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.76 E-value=0.0015 Score=63.03 Aligned_cols=87 Identities=10% Similarity=0.119 Sum_probs=50.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh---C--CCeechhHHHHHHccCCChHHHHHHHHHHCCCCC-----C----HHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL---E--VPHISMGSLVRQELSPRSALYKQIANAVNEGKLV-----P----EDVI 127 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~---g--~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~-----~----~~~~ 127 (273)
++..++|.|+||+||||++.+++... | +.|++..+-..+....-..+|-.+.+++.+|.+. | .+..
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~~~~ 341 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGLEDH 341 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCChHHH
Confidence 67789999999999999999998865 3 5677654332222211123333345555555331 1 1233
Q ss_pred HHHHHHHHHhcccCCcceEEEeCC
Q 024067 128 FALLSKRLEEGYYRGESGFILDGI 151 (273)
Q Consensus 128 ~~ll~~~l~~~~~~~~~g~IlDg~ 151 (273)
...+.+.+.+. ..+-+|||..
T Consensus 342 ~~~i~~~i~~~---~~~~vvIDsi 362 (484)
T TIGR02655 342 LQIIKSEIADF---KPARIAIDSL 362 (484)
T ss_pred HHHHHHHHHHc---CCCEEEEcCH
Confidence 34444555442 3467888874
No 273
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.76 E-value=0.0016 Score=56.21 Aligned_cols=36 Identities=14% Similarity=0.135 Sum_probs=28.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh-----CCCeechhHHH
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMGSLV 98 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~-----g~~~is~~dll 98 (273)
...++|+|++|+|||+++..+++.. .+.+++..++.
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~ 82 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPL 82 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhH
Confidence 4468899999999999999999876 56667665443
No 274
>PRK06526 transposase; Provisional
Probab=96.73 E-value=0.0017 Score=57.40 Aligned_cols=38 Identities=24% Similarity=0.215 Sum_probs=28.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh-----CCCeechhHHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMGSLVR 99 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~-----g~~~is~~dllr 99 (273)
.+..++|+||||+|||+++..|+... .+.++++.+++.
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~ 139 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVA 139 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHH
Confidence 45679999999999999999998765 234455555554
No 275
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.71 E-value=0.0014 Score=57.61 Aligned_cols=26 Identities=27% Similarity=0.307 Sum_probs=23.4
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhC
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLE 88 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g 88 (273)
+..++|.|++|+||||+++.+++.+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 45788999999999999999999876
No 276
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.0016 Score=59.23 Aligned_cols=32 Identities=34% Similarity=0.455 Sum_probs=29.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeec
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHIS 93 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is 93 (273)
.|+.|+++||.|.|||.+|++||+..|.|+|-
T Consensus 49 ~PKNILMIGpTGVGKTEIARRLAkl~~aPFiK 80 (444)
T COG1220 49 TPKNILMIGPTGVGKTEIARRLAKLAGAPFIK 80 (444)
T ss_pred CccceEEECCCCCcHHHHHHHHHHHhCCCeEE
Confidence 47899999999999999999999999999875
No 277
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.0015 Score=58.86 Aligned_cols=31 Identities=35% Similarity=0.537 Sum_probs=27.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeec
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHIS 93 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is 93 (273)
.-.|+++||.|||||-+|+.||+.+++|+-=
T Consensus 97 KSNILLiGPTGsGKTlLAqTLAk~LnVPFai 127 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQTLAKILNVPFAI 127 (408)
T ss_pred eccEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 3479999999999999999999999999753
No 278
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.70 E-value=0.0019 Score=53.64 Aligned_cols=27 Identities=15% Similarity=-0.029 Sum_probs=23.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLE 88 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g 88 (273)
++..+.|+|++||||||+.+.|...+.
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHh
Confidence 466888999999999999999998874
No 279
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.69 E-value=0.002 Score=53.74 Aligned_cols=39 Identities=26% Similarity=0.388 Sum_probs=30.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh-----CCCeechhHHHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMGSLVRQ 100 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~-----g~~~is~~dllr~ 100 (273)
++..++|.|+||+|||.+|..++.++ .+.++++.+++.+
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~ 89 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDE 89 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecc
Confidence 45679999999999999999998755 4678888888864
No 280
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=96.69 E-value=0.00092 Score=57.78 Aligned_cols=22 Identities=41% Similarity=0.771 Sum_probs=19.3
Q ss_pred EEEEcCCCCChhHHHHHHHHHh
Q 024067 66 WVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 66 Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
-+|+|||||||||.|.-..+-+
T Consensus 5 qvVIGPPgSGKsTYc~g~~~fl 26 (290)
T KOG1533|consen 5 QVVIGPPGSGKSTYCNGMSQFL 26 (290)
T ss_pred eEEEcCCCCCccchhhhHHHHH
Confidence 5789999999999998887766
No 281
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.69 E-value=0.0021 Score=50.46 Aligned_cols=29 Identities=28% Similarity=0.444 Sum_probs=24.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~ 90 (273)
.+..|++.|+-||||||+++.|++.+|..
T Consensus 14 ~g~vi~L~GdLGaGKTtf~r~l~~~lg~~ 42 (123)
T PF02367_consen 14 PGDVILLSGDLGAGKTTFVRGLARALGID 42 (123)
T ss_dssp S-EEEEEEESTTSSHHHHHHHHHHHTT--
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 46789999999999999999999999864
No 282
>CHL00176 ftsH cell division protein; Validated
Probab=96.68 E-value=0.0017 Score=64.47 Aligned_cols=32 Identities=31% Similarity=0.494 Sum_probs=28.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~ 94 (273)
+.-++|.||||+|||++++.||...+++++.+
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~e~~~p~i~i 247 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSI 247 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 45689999999999999999999999887764
No 283
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.0042 Score=55.71 Aligned_cols=55 Identities=18% Similarity=0.163 Sum_probs=39.5
Q ss_pred ccchhcCCCCCCCCCCeEEEEEcCCCCChhHHHHHHHHHhCCCe--echhHHHHHHc
Q 024067 48 EPMLRLDSAGSPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPH--ISMGSLVRQEL 102 (273)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~--is~~dllr~~~ 102 (273)
-|+..-..+......-.-|++.||||+|||-+|+.+|-+-+-.+ ||..||+.+-+
T Consensus 151 LPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWm 207 (439)
T KOG0739|consen 151 LPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWM 207 (439)
T ss_pred ecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHh
Confidence 45555555544432234588999999999999999999998655 55678887644
No 284
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=96.68 E-value=0.0076 Score=48.83 Aligned_cols=43 Identities=30% Similarity=0.345 Sum_probs=32.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh----CCCeechhHHHHHHcc
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLL----EVPHISMGSLVRQELS 103 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~----g~~~is~~dllr~~~~ 103 (273)
.++..|-|+|.+||||||+|-.|.+.+ .+.|+--+|-+|.-++
T Consensus 29 qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN 75 (207)
T KOG0635|consen 29 QKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLN 75 (207)
T ss_pred CCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCcccccccc
Confidence 467788899999999999999999877 2455555566665443
No 285
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=96.67 E-value=0.0018 Score=55.05 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=23.1
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhC
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLE 88 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g 88 (273)
|.+|.|+|++||||||+.++|...+.
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~l~ 26 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRALR 26 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhC
Confidence 46899999999999999999998763
No 286
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.66 E-value=0.002 Score=58.58 Aligned_cols=35 Identities=17% Similarity=0.308 Sum_probs=27.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhC-------CCeechhHHH
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLLE-------VPHISMGSLV 98 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~g-------~~~is~~dll 98 (273)
..++|.||||+||||+++.+++.+. +.+++..++.
T Consensus 37 ~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~ 78 (337)
T PRK12402 37 PHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFF 78 (337)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhh
Confidence 3588999999999999999999873 2355655543
No 287
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.66 E-value=0.0026 Score=49.96 Aligned_cols=29 Identities=21% Similarity=0.304 Sum_probs=26.5
Q ss_pred CCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 59 PPRRGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 59 ~~~~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.|.+|..+.+.|+||+||+.+++.||+.+
T Consensus 49 ~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 49 NPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred CCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 56789999999999999999999999984
No 288
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.66 E-value=0.013 Score=51.80 Aligned_cols=39 Identities=36% Similarity=0.491 Sum_probs=31.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh---C--CCeechhHHHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL---E--VPHISMGSLVRQ 100 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~---g--~~~is~~dllr~ 100 (273)
++..++|.|+||+|||.++..|+.++ | +.++.+.+++.+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~ 147 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSK 147 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence 67789999999999999999998876 3 456777777763
No 289
>PRK13695 putative NTPase; Provisional
Probab=96.65 E-value=0.0017 Score=53.61 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHh
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
|+|+|+|++|+||||+++.|+..+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999988765
No 290
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.64 E-value=0.0017 Score=56.61 Aligned_cols=33 Identities=12% Similarity=0.052 Sum_probs=27.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhC-----CCeechhH
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGS 96 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~g-----~~~is~~d 96 (273)
..++|.||||+|||+++..+++... +.+++.++
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 4788999999999999999998764 56777654
No 291
>PRK06893 DNA replication initiation factor; Validated
Probab=96.64 E-value=0.0021 Score=55.80 Aligned_cols=32 Identities=13% Similarity=0.098 Sum_probs=26.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHh-----CCCeechh
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMG 95 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~-----g~~~is~~ 95 (273)
..++|.||||+|||+++..++..+ ++.++++.
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~ 76 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS 76 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence 468899999999999999999876 56677653
No 292
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.64 E-value=0.0069 Score=56.80 Aligned_cols=104 Identities=24% Similarity=0.340 Sum_probs=60.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh---C--CCeechhHHHHHHccCCChHHHHHHHH--------HHCC-CCCCHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLL---E--VPHISMGSLVRQELSPRSALYKQIANA--------VNEG-KLVPEDV 126 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~---g--~~~is~~dllr~~~~~~~~~g~~i~~~--------l~~g-~~~~~~~ 126 (273)
.+|..|.+.|.-||||||.|..||..| | +-.+++ |+.|-. -.++++.. +..+ +.-|.++
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaa-D~~RpA------A~eQL~~La~q~~v~~f~~~~~~~Pv~I 170 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAA-DTYRPA------AIEQLKQLAEQVGVPFFGSGTEKDPVEI 170 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEec-ccCChH------HHHHHHHHHHHcCCceecCCCCCCHHHH
Confidence 457889999999999999999999988 2 223443 444421 12233222 1122 2234455
Q ss_pred HHHHHHHHHHhcccCCcceEEEeCCCCCHHHHHHHHhh------CCCce-EEEEcc
Q 024067 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQI------VDVDL-VINFKS 175 (273)
Q Consensus 127 ~~~ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~------~~~d~-vI~L~~ 175 (273)
..+-++.+-.. ...-+|+|.-.|.....+.+++. ..||- ++.+|+
T Consensus 171 ak~al~~ak~~----~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDa 222 (451)
T COG0541 171 AKAALEKAKEE----GYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDA 222 (451)
T ss_pred HHHHHHHHHHc----CCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEec
Confidence 55555443333 24678999887776655555433 56764 444454
No 293
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.63 E-value=0.0043 Score=53.79 Aligned_cols=35 Identities=20% Similarity=0.131 Sum_probs=27.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh-----CCCeechh
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMG 95 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~-----g~~~is~~ 95 (273)
.++-.++|.|+|||||||++..++... .+.+++++
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e 62 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTE 62 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcC
Confidence 367788899999999999999996543 34566653
No 294
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.63 E-value=0.00096 Score=55.31 Aligned_cols=30 Identities=20% Similarity=0.201 Sum_probs=23.6
Q ss_pred EEEEcCCCCChhHHHHHHHHHh-----CCCeechh
Q 024067 66 WVLIGDPGVKKHVYADNLSKLL-----EVPHISMG 95 (273)
Q Consensus 66 Ivi~G~pGSGKsT~a~~La~~~-----g~~~is~~ 95 (273)
++|.|+||+|||+++..++... .+.+++++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e 36 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE 36 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 6899999999999999887754 34566653
No 295
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.63 E-value=0.0021 Score=49.16 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=20.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLS 84 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La 84 (273)
.+..++|.|++||||||+++.+.
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 46788999999999999999987
No 296
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=96.61 E-value=0.0019 Score=53.58 Aligned_cols=26 Identities=38% Similarity=0.525 Sum_probs=23.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCC
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLLEV 89 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~g~ 89 (273)
..++++||+|+|||.+++.|++.+..
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~ 29 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFV 29 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 46789999999999999999999985
No 297
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.61 E-value=0.0016 Score=51.99 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh
Q 024067 65 QWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 65 ~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
+++|+|+||+||||++..++...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~ 23 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI 23 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH
Confidence 36799999999999999998876
No 298
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.60 E-value=0.0018 Score=53.28 Aligned_cols=28 Identities=21% Similarity=0.227 Sum_probs=18.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE 88 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g 88 (273)
..+..++|.|++|+|||++.+.+.+.+.
T Consensus 22 ~~~~~~ll~G~~G~GKT~ll~~~~~~~~ 49 (185)
T PF13191_consen 22 GSPRNLLLTGESGSGKTSLLRALLDRLA 49 (185)
T ss_dssp -----EEE-B-TTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3567899999999999999998888763
No 299
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.60 E-value=0.0018 Score=55.46 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=21.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLS 84 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La 84 (273)
.++-.++|+||+||||||+.+-|.
T Consensus 26 ~~Gevv~iiGpSGSGKSTlLRclN 49 (240)
T COG1126 26 EKGEVVVIIGPSGSGKSTLLRCLN 49 (240)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHH
Confidence 367889999999999999999885
No 300
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.0015 Score=65.34 Aligned_cols=32 Identities=28% Similarity=0.439 Sum_probs=28.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~ 94 (273)
|+=++|+||||+|||-+|+.+|.+-|+|++++
T Consensus 344 PkGvLL~GPPGTGKTLLAKAiAGEAgVPF~sv 375 (774)
T KOG0731|consen 344 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSV 375 (774)
T ss_pred cCceEEECCCCCcHHHHHHHHhcccCCceeee
Confidence 34477899999999999999999999999875
No 301
>PRK09183 transposase/IS protein; Provisional
Probab=96.58 E-value=0.0026 Score=56.35 Aligned_cols=38 Identities=29% Similarity=0.300 Sum_probs=28.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh---C--CCeechhHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLL---E--VPHISMGSLV 98 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~---g--~~~is~~dll 98 (273)
.++..++|+||||+|||+++..|+... | +.+++..+++
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~ 142 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLL 142 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHH
Confidence 356678899999999999999997654 3 3455655555
No 302
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=96.56 E-value=0.014 Score=51.87 Aligned_cols=44 Identities=23% Similarity=0.323 Sum_probs=34.5
Q ss_pred CCCCCCeEEEEEcCCCCChhHHHHHHHHHhCC-----CeechhHHHHHH
Q 024067 58 SPPRRGVQWVLIGDPGVKKHVYADNLSKLLEV-----PHISMGSLVRQE 101 (273)
Q Consensus 58 ~~~~~~~~Ivi~G~pGSGKsT~a~~La~~~g~-----~~is~~dllr~~ 101 (273)
+.+.+|+.|+++|.-||||||.+++|-.++.- -.|+.|--++..
T Consensus 14 ~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~v 62 (366)
T KOG1532|consen 14 GAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNV 62 (366)
T ss_pred ccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcC
Confidence 34568899999999999999999999888732 246677777654
No 303
>PRK08181 transposase; Validated
Probab=96.55 E-value=0.0031 Score=56.15 Aligned_cols=39 Identities=28% Similarity=0.405 Sum_probs=31.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh---C--CCeechhHHHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL---E--VPHISMGSLVRQ 100 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~---g--~~~is~~dllr~ 100 (273)
++..++|+||||+|||.++..++... | +.++++.+++.+
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~ 148 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQK 148 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHH
Confidence 45679999999999999999998654 3 667888777764
No 304
>PRK04296 thymidine kinase; Provisional
Probab=96.55 E-value=0.0022 Score=53.98 Aligned_cols=25 Identities=8% Similarity=-0.171 Sum_probs=22.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
+..++++|+||+||||.+..++.++
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~ 26 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNY 26 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHH
Confidence 5688999999999999999999887
No 305
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=96.55 E-value=0.0019 Score=59.03 Aligned_cols=42 Identities=24% Similarity=0.350 Sum_probs=32.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC----CCeechhHHHHHHcc
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLE----VPHISMGSLVRQELS 103 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g----~~~is~~dllr~~~~ 103 (273)
.+.-|+|.||||+|||-+|--+|+.+| |.-++..+++..++.
T Consensus 64 aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~E~k 109 (450)
T COG1224 64 AGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLEVK 109 (450)
T ss_pred cccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeeeeccc
Confidence 467789999999999999999999997 444555555554443
No 306
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.53 E-value=0.002 Score=62.77 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
+..+++|+||||+||||+++.|++.+
T Consensus 102 ~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 102 KKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred CCceEEEecCCCCCchHHHHHHHHHH
Confidence 55689999999999999999999976
No 307
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.0084 Score=57.63 Aligned_cols=32 Identities=25% Similarity=0.353 Sum_probs=28.7
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~ 94 (273)
|+=|+++||||+|||-+|+.+|-+-|+|++.+
T Consensus 337 PKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~ 368 (752)
T KOG0734|consen 337 PKGVLLVGPPGTGKTLLARAVAGEAGVPFFYA 368 (752)
T ss_pred CCceEEeCCCCCchhHHHHHhhcccCCCeEec
Confidence 45588999999999999999999999998764
No 308
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.52 E-value=0.018 Score=57.11 Aligned_cols=27 Identities=26% Similarity=0.375 Sum_probs=24.7
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCC
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEV 89 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~ 89 (273)
+..++|.|++|+||||+++.|++.+++
T Consensus 38 pHA~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 38 HHAYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 456789999999999999999999987
No 309
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.52 E-value=0.0023 Score=54.22 Aligned_cols=24 Identities=13% Similarity=0.194 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhC
Q 024067 65 QWVLIGDPGVKKHVYADNLSKLLE 88 (273)
Q Consensus 65 ~Ivi~G~pGSGKsT~a~~La~~~g 88 (273)
.|+|.||+||||||+...|...+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 578999999999999999888774
No 310
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.51 E-value=0.0024 Score=64.71 Aligned_cols=32 Identities=22% Similarity=0.307 Sum_probs=28.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~ 94 (273)
+.-|+|.||||+|||++++.||..++++++++
T Consensus 487 ~~giLL~GppGtGKT~lakalA~e~~~~fi~v 518 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAVATESGANFIAV 518 (733)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcCCCEEEE
Confidence 34588999999999999999999999887764
No 311
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.51 E-value=0.0023 Score=61.79 Aligned_cols=32 Identities=25% Similarity=0.279 Sum_probs=28.3
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~ 94 (273)
+..++|.||||+|||.+|+.+|..++.+++++
T Consensus 276 ~~giLl~GpPGtGKT~lAkava~~~~~~fi~v 307 (494)
T COG0464 276 PKGVLLYGPPGTGKTLLAKAVALESRSRFISV 307 (494)
T ss_pred CCeeEEECCCCCCHHHHHHHHHhhCCCeEEEe
Confidence 45788999999999999999999888877765
No 312
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.51 E-value=0.0021 Score=62.11 Aligned_cols=28 Identities=25% Similarity=0.323 Sum_probs=24.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~ 90 (273)
+.-++|.||||+|||++++.+++.++..
T Consensus 216 p~GILLyGPPGTGKT~LAKAlA~eL~~~ 243 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIAKAVANSLAQR 243 (512)
T ss_pred CcceEEECCCCCcHHHHHHHHHHhhccc
Confidence 4468899999999999999999998654
No 313
>PLN03025 replication factor C subunit; Provisional
Probab=96.50 E-value=0.0025 Score=58.07 Aligned_cols=26 Identities=27% Similarity=0.245 Sum_probs=22.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhC
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLE 88 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g 88 (273)
...++|.||||+||||++..+++.+.
T Consensus 34 ~~~lll~Gp~G~GKTtla~~la~~l~ 59 (319)
T PLN03025 34 MPNLILSGPPGTGKTTSILALAHELL 59 (319)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHh
Confidence 34578999999999999999999873
No 314
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.032 Score=54.74 Aligned_cols=124 Identities=18% Similarity=0.104 Sum_probs=66.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeec--hhHHHHHHcc-CCChHHHHHH-------------HHHH---CCCC-
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHIS--MGSLVRQELS-PRSALYKQIA-------------NAVN---EGKL- 121 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is--~~dllr~~~~-~~~~~g~~i~-------------~~l~---~g~~- 121 (273)
-|+-+.+.||||+|||.+|+.+|.+-++|+++ -.+.+.--.. +.+....... ++-. ++..
T Consensus 182 iPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g 261 (596)
T COG0465 182 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAG 261 (596)
T ss_pred cccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCC
Confidence 35668899999999999999999999988554 4455543322 1111111111 1100 0000
Q ss_pred --CCHHHHHHHHHHHHHhccc-CCcce-EEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHh
Q 024067 122 --VPEDVIFALLSKRLEEGYY-RGESG-FILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNL 185 (273)
Q Consensus 122 --~~~~~~~~ll~~~l~~~~~-~~~~g-~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~ 185 (273)
...+...+.+.+.+-+.+- ..+.| +|+.+.+|--..-..|-.-+.+|.-|.++.|+-...+.+.
T Consensus 262 ~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~Il 329 (596)
T COG0465 262 LGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQIL 329 (596)
T ss_pred CCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHH
Confidence 0112222233333332211 12345 4667777654444445455788999999999844444443
No 315
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.48 E-value=0.0028 Score=58.07 Aligned_cols=27 Identities=26% Similarity=0.436 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.++..|.|+|+|||||||++..|...+
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~~l 80 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGMHL 80 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 357889999999999999999988877
No 316
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=96.47 E-value=0.0025 Score=50.69 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHH
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
..+|+++|++||||||+...|...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999998753
No 317
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=96.46 E-value=0.0014 Score=60.36 Aligned_cols=38 Identities=32% Similarity=0.440 Sum_probs=27.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC--CCe--echhHHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLE--VPH--ISMGSLVR 99 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g--~~~--is~~dllr 99 (273)
.+.-|+|.||||+|||.+|..+|+.+| +|+ ++..++..
T Consensus 49 aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS 90 (398)
T PF06068_consen 49 AGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYS 90 (398)
T ss_dssp TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-B
T ss_pred cCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeee
Confidence 467899999999999999999999997 554 44455543
No 318
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.46 E-value=0.0026 Score=64.83 Aligned_cols=32 Identities=28% Similarity=0.513 Sum_probs=27.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeec
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHIS 93 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is 93 (273)
++..++|.||||+||||+|+.||+.++.+++.
T Consensus 346 ~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~ 377 (775)
T TIGR00763 346 KGPILCLVGPPGVGKTSLGKSIAKALNRKFVR 377 (775)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhcCCeEE
Confidence 45578999999999999999999999877654
No 319
>PF03976 PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR022488 This presumed domain is found in one or two copies per protein. The domain is about 230 amino acids in length and has many conserved motifs, it has polyphosphate kinase activity [, ].; PDB: 3CZP_A 3RHF_D 3CZQ_B.
Probab=96.45 E-value=0.022 Score=49.51 Aligned_cols=28 Identities=18% Similarity=0.028 Sum_probs=24.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCC
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEV 89 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~ 89 (273)
.++.|+|.|..||||+.+.+.|.+.++=
T Consensus 30 ~~vlIl~eG~d~sGKg~~I~~l~~~lDP 57 (228)
T PF03976_consen 30 IPVLILFEGWDASGKGGTINRLIEWLDP 57 (228)
T ss_dssp HEEEEEEEESTTSSHHHHHHHHHCCS-G
T ss_pred CcEEEEEeccccCCchHHHHHHHHhCCC
Confidence 4689999999999999999999998853
No 320
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=96.45 E-value=0.0033 Score=50.93 Aligned_cols=32 Identities=22% Similarity=0.255 Sum_probs=26.6
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeechh
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMG 95 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~ 95 (273)
+.-++|+|++|+||||++..|.++ |..+++-|
T Consensus 14 g~gvLi~G~sG~GKStlal~L~~~-g~~lvaDD 45 (149)
T cd01918 14 GIGVLITGPSGIGKSELALELIKR-GHRLVADD 45 (149)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc-CCeEEECC
Confidence 567899999999999999999876 77777543
No 321
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.45 E-value=0.0029 Score=55.67 Aligned_cols=26 Identities=31% Similarity=0.394 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
+..+|-|+||||+||||+...|.+.|
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~ 53 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIREL 53 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHH
Confidence 56789999999999999999999887
No 322
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.44 E-value=0.0028 Score=60.89 Aligned_cols=27 Identities=26% Similarity=0.363 Sum_probs=24.2
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCC
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEV 89 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~ 89 (273)
+..++|.||||+||||+|+.+|+.+++
T Consensus 36 ~~~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 36 SHAYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 345889999999999999999999876
No 323
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=96.43 E-value=0.0027 Score=51.69 Aligned_cols=25 Identities=12% Similarity=0.146 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
+..+|+|+|++||||||+.+.|...
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcC
Confidence 4678999999999999999999753
No 324
>PHA03134 thymidine kinase; Provisional
Probab=96.41 E-value=0.33 Score=44.47 Aligned_cols=26 Identities=23% Similarity=0.183 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
.+-.+|.|.|+.|.||||.++.|+..
T Consensus 11 ~~~~rvYlDG~~GvGKTT~~~~l~~~ 36 (340)
T PHA03134 11 VRIVRIYLDGAYGIGKSTTGRVMASA 36 (340)
T ss_pred ccEEEEEEeCCCcCCHHHHHHHHHHh
Confidence 35678999999999999999888864
No 325
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=96.41 E-value=0.0025 Score=59.98 Aligned_cols=24 Identities=25% Similarity=0.555 Sum_probs=21.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhC
Q 024067 65 QWVLIGDPGVKKHVYADNLSKLLE 88 (273)
Q Consensus 65 ~Ivi~G~pGSGKsT~a~~La~~~g 88 (273)
=|+|.|+||+||||.|+.||+.|.
T Consensus 265 GILIAG~PGaGKsTFaqAlAefy~ 288 (604)
T COG1855 265 GILIAGAPGAGKSTFAQALAEFYA 288 (604)
T ss_pred ceEEecCCCCChhHHHHHHHHHHH
Confidence 378899999999999999999883
No 326
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.0024 Score=62.09 Aligned_cols=58 Identities=21% Similarity=0.204 Sum_probs=40.1
Q ss_pred ccCCCccchhcCCCCCCCC-CCeEEEEEcCCCCChhHHHHHHHHHhCCCeech--hHHHHH
Q 024067 43 HGQASEPMLRLDSAGSPPR-RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM--GSLVRQ 100 (273)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~-~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~--~dllr~ 100 (273)
+.-+-.|+.+-|.+....- -|-=|+++||||+|||-+|+.+|.+-|..+|++ -+|+.+
T Consensus 524 ~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNk 584 (802)
T KOG0733|consen 524 NMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNK 584 (802)
T ss_pred HHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHH
Confidence 3344466665554432211 244588999999999999999999999888886 345543
No 327
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.40 E-value=0.021 Score=56.28 Aligned_cols=36 Identities=14% Similarity=0.233 Sum_probs=30.0
Q ss_pred EEEEcCCCCChhHHHHHHHHHh-------CCCeechhHHHHHH
Q 024067 66 WVLIGDPGVKKHVYADNLSKLL-------EVPHISMGSLVRQE 101 (273)
Q Consensus 66 Ivi~G~pGSGKsT~a~~La~~~-------g~~~is~~dllr~~ 101 (273)
++|.|++|+|||.++..++... .+.|++..+++.+.
T Consensus 317 L~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el 359 (617)
T PRK14086 317 LFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEF 359 (617)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHH
Confidence 8899999999999999999865 34788888877543
No 328
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=96.39 E-value=0.0027 Score=61.10 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
|+++.++||||+||||+.+.|..+|
T Consensus 69 PfIvavvGPpGtGKsTLirSlVrr~ 93 (1077)
T COG5192 69 PFIVAVVGPPGTGKSTLIRSLVRRF 93 (1077)
T ss_pred CeEEEeecCCCCChhHHHHHHHHHH
Confidence 5666699999999999999999987
No 329
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.39 E-value=0.003 Score=63.99 Aligned_cols=32 Identities=25% Similarity=0.304 Sum_probs=27.7
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~ 94 (273)
+..|+|.||||+||||+++.|++.++.+++.+
T Consensus 212 ~~giLL~GppGtGKT~laraia~~~~~~~i~i 243 (733)
T TIGR01243 212 PKGVLLYGPPGTGKTLLAKAVANEAGAYFISI 243 (733)
T ss_pred CceEEEECCCCCChHHHHHHHHHHhCCeEEEE
Confidence 45688999999999999999999998776543
No 330
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=96.39 E-value=0.0029 Score=48.38 Aligned_cols=21 Identities=29% Similarity=0.491 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChhHHHHHHHH
Q 024067 65 QWVLIGDPGVKKHVYADNLSK 85 (273)
Q Consensus 65 ~Ivi~G~pGSGKsT~a~~La~ 85 (273)
+|+|+|+||+||||+...|..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~ 21 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTG 21 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHhc
Confidence 588999999999999999984
No 331
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.38 E-value=0.0044 Score=52.58 Aligned_cols=36 Identities=25% Similarity=0.214 Sum_probs=29.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh-----CCCeechhH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMGS 96 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~-----g~~~is~~d 96 (273)
.++..+.|.|+||||||++|..++... .+.+|++..
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 478899999999999999999998654 356777643
No 332
>KOG4235 consensus Mitochondrial thymidine kinase 2/deoxyguanosine kinase [Nucleotide transport and metabolism]
Probab=96.36 E-value=0.33 Score=41.18 Aligned_cols=25 Identities=20% Similarity=0.226 Sum_probs=22.5
Q ss_pred CCCceEEEEccCHHHHHHHHhcCCc
Q 024067 165 VDVDLVINFKSIEDQLVKRNLESEA 189 (273)
Q Consensus 165 ~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (273)
..+|.+|+|.++++++.+|+..|..
T Consensus 152 v~~dgiIYLrasPetc~~Ri~~R~R 176 (244)
T KOG4235|consen 152 VSLDGIIYLRASPETCYKRIYLRAR 176 (244)
T ss_pred cccceEEEeecChHHHHHHHHHHhh
Confidence 4689999999999999999988874
No 333
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.36 E-value=0.0035 Score=58.17 Aligned_cols=28 Identities=36% Similarity=0.494 Sum_probs=24.4
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~ 90 (273)
+..++|.||||+||||+|+.+++.+++.
T Consensus 38 ~h~~L~~Gp~G~GKTtla~~la~~l~c~ 65 (363)
T PRK14961 38 HHAWLLSGTRGVGKTTIARLLAKSLNCQ 65 (363)
T ss_pred CeEEEEecCCCCCHHHHHHHHHHHhcCC
Confidence 3457899999999999999999998753
No 334
>PRK13768 GTPase; Provisional
Probab=96.36 E-value=0.0034 Score=55.33 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
++.+++.|++||||||++..++..+
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l 26 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWL 26 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHH
Confidence 5688999999999999999999877
No 335
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.36 E-value=0.0026 Score=58.28 Aligned_cols=32 Identities=22% Similarity=0.310 Sum_probs=25.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGS 96 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~d 96 (273)
.+-.++|.||+||||||+-+.|| |+.-++.|+
T Consensus 28 ~Gef~vllGPSGcGKSTlLr~IA---GLe~~~~G~ 59 (338)
T COG3839 28 DGEFVVLLGPSGCGKSTLLRMIA---GLEEPTSGE 59 (338)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh---CCCCCCCce
Confidence 56789999999999999999998 454444433
No 336
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.36 E-value=0.0034 Score=52.54 Aligned_cols=27 Identities=15% Similarity=0.238 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLE 88 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g 88 (273)
.+..++|+|++||||||+.+.|+..+.
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 467899999999999999999988763
No 337
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.35 E-value=0.006 Score=55.66 Aligned_cols=75 Identities=20% Similarity=0.198 Sum_probs=45.1
Q ss_pred hhhhchhhhhhccCCCcchhhcccCCCccchhcCCC---CCCCCCCeEEEEEcCCCCChhHHHHHHHHHh-----CCCee
Q 024067 21 SRAYGSAAAAQLQYDYDEECDLHGQASEPMLRLDSA---GSPPRRGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHI 92 (273)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Ivi~G~pGSGKsT~a~~La~~~-----g~~~i 92 (273)
-..||..+.-.+. + .+.. -..+.+..+..+|.. |..| ++..+.|.|||||||||+|..++... .+.+|
T Consensus 14 ~~~~g~~~~~~~~-~-~~~~-~~~~i~TGi~~LD~~Lg~GGlp-~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yI 89 (321)
T TIGR02012 14 EKQFGKGSIMRLG-E-KSVM-DVETISTGSLSLDLALGVGGLP-RGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFI 89 (321)
T ss_pred HHHcCcceeEECc-c-cccc-cCceecCCCHHHHHHhcCCCCc-CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEE
Confidence 4778887765433 1 1111 112333333333432 3333 78889999999999999999887655 24577
Q ss_pred chhHHHH
Q 024067 93 SMGSLVR 99 (273)
Q Consensus 93 s~~dllr 99 (273)
++.+-+.
T Consensus 90 d~E~~~~ 96 (321)
T TIGR02012 90 DAEHALD 96 (321)
T ss_pred cccchhH
Confidence 7654443
No 338
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=96.35 E-value=0.0039 Score=51.16 Aligned_cols=25 Identities=20% Similarity=0.206 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhC
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLLE 88 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~g 88 (273)
..|.|+|++||||||++.+|...+.
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~ 26 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALS 26 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5688999999999999999999873
No 339
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.35 E-value=0.03 Score=51.89 Aligned_cols=110 Identities=13% Similarity=0.170 Sum_probs=60.4
Q ss_pred CCCCCCeEEEEEcCCCCChhHHHHHHHHHh---CCC-eechhHHHHHHccCCChHHHHHHH-HHH-------CCCC-CCH
Q 024067 58 SPPRRGVQWVLIGDPGVKKHVYADNLSKLL---EVP-HISMGSLVRQELSPRSALYKQIAN-AVN-------EGKL-VPE 124 (273)
Q Consensus 58 ~~~~~~~~Ivi~G~pGSGKsT~a~~La~~~---g~~-~is~~dllr~~~~~~~~~g~~i~~-~l~-------~g~~-~~~ 124 (273)
+...++-.|.+.|.-||||||.|..||-.| |+. .+-..|..|.- .+ .+++. ... .+.. .|-
T Consensus 96 ~~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRag-----Af-DQLkqnA~k~~iP~ygsyte~dpv 169 (483)
T KOG0780|consen 96 PKKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAG-----AF-DQLKQNATKARVPFYGSYTEADPV 169 (483)
T ss_pred cccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccc-----hH-HHHHHHhHhhCCeeEecccccchH
Confidence 334567789999999999999999999988 332 12222333321 01 11111 111 1111 122
Q ss_pred HHHHHHHHHHHHhcccCCcceEEEeCCCCCHHHHHHHHhh------CCCce-EEEEccCH
Q 024067 125 DVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQI------VDVDL-VINFKSIE 177 (273)
Q Consensus 125 ~~~~~ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~------~~~d~-vI~L~~~~ 177 (273)
.+..+-+.. .... +..-+|+|...|...+...+++. ..||. ++.+|++-
T Consensus 170 ~ia~egv~~-fKke---~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasi 225 (483)
T KOG0780|consen 170 KIASEGVDR-FKKE---NFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASI 225 (483)
T ss_pred HHHHHHHHH-HHhc---CCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccc
Confidence 222333322 3322 23567889888887777776643 46875 55566665
No 340
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.01 Score=53.13 Aligned_cols=52 Identities=19% Similarity=0.381 Sum_probs=35.3
Q ss_pred CCCCCCCCCCeEEEEEcCCCCChhHHHHHHHHHhCCCeech--hHHHHHHccCCCh
Q 024067 54 DSAGSPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM--GSLVRQELSPRSA 107 (273)
Q Consensus 54 ~~~~~~~~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~--~dllr~~~~~~~~ 107 (273)
+-.|-.| |+=+++.|+||+|||-+|+.+|......++.+ .+|+.+.+-.+..
T Consensus 212 eemGikp--PKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGpk 265 (440)
T KOG0726|consen 212 EEMGIKP--PKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPK 265 (440)
T ss_pred HHcCCCC--CCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccchH
Confidence 3334444 44577899999999999999999887665542 4555555444433
No 341
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=96.34 E-value=0.0027 Score=54.14 Aligned_cols=25 Identities=44% Similarity=0.711 Sum_probs=20.2
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
+..++|.|+||+|||++|++|..-+
T Consensus 22 ~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 22 GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 4589999999999999999999875
No 342
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.33 E-value=0.0039 Score=63.18 Aligned_cols=33 Identities=27% Similarity=0.403 Sum_probs=27.4
Q ss_pred CCCe-EEEEEcCCCCChhHHHHHHHHHhCCCeec
Q 024067 61 RRGV-QWVLIGDPGVKKHVYADNLSKLLEVPHIS 93 (273)
Q Consensus 61 ~~~~-~Ivi~G~pGSGKsT~a~~La~~~g~~~is 93 (273)
.+|. .++|+||||+|||++|+.||+.++.+++.
T Consensus 485 ~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~ 518 (758)
T PRK11034 485 HKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLR 518 (758)
T ss_pred CCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEE
Confidence 3443 58899999999999999999999876543
No 343
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.33 E-value=0.013 Score=58.94 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=24.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~ 90 (273)
+..++|+|++|+||||+++.|++.+++.
T Consensus 38 ~HAyLFtGPpGvGKTTlAriLAKaLnCe 65 (830)
T PRK07003 38 HHAYLFTGTRGVGKTTLSRIFAKALNCE 65 (830)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 4557899999999999999999999864
No 344
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.33 E-value=0.0038 Score=55.94 Aligned_cols=26 Identities=27% Similarity=0.365 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
++..|+|+||+|+||||++..|+..+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~ 218 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARF 218 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999998866
No 345
>PTZ00202 tuzin; Provisional
Probab=96.32 E-value=0.023 Score=53.98 Aligned_cols=28 Identities=18% Similarity=0.127 Sum_probs=24.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~ 90 (273)
+.+++|+|++|+||||+++.+...++.+
T Consensus 286 privvLtG~~G~GKTTLlR~~~~~l~~~ 313 (550)
T PTZ00202 286 PRIVVFTGFRGCGKSSLCRSAVRKEGMP 313 (550)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhcCCce
Confidence 4588999999999999999999888754
No 346
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=96.31 E-value=0.0034 Score=57.44 Aligned_cols=32 Identities=34% Similarity=0.577 Sum_probs=27.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeec
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHIS 93 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is 93 (273)
.+..++|.|+||+|||++++.+|+.++.+++.
T Consensus 42 ~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~ 73 (329)
T COG0714 42 AGGHVLLEGPPGVGKTLLARALARALGLPFVR 73 (329)
T ss_pred cCCCEEEECCCCccHHHHHHHHHHHhCCCeEE
Confidence 35678899999999999999999999876554
No 347
>KOG4622 consensus Predicted nucleotide kinase [General function prediction only]
Probab=96.31 E-value=0.15 Score=43.13 Aligned_cols=37 Identities=16% Similarity=0.338 Sum_probs=28.6
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh------CCCeechhHHHHHH
Q 024067 65 QWVLIGDPGVKKHVYADNLSKLL------EVPHISMGSLVRQE 101 (273)
Q Consensus 65 ~Ivi~G~pGSGKsT~a~~La~~~------g~~~is~~dllr~~ 101 (273)
.+.++|.|.+||||+|++|-... .+.|++.||++...
T Consensus 3 LlaliGiPAaGKSs~c~~ilga~aaLrvrhi~hlcfDDFlmda 45 (291)
T KOG4622|consen 3 LLALIGIPAAGKSSFCRKILGAHAALRVRHIEHLCFDDFLMDA 45 (291)
T ss_pred eeeeecCcccchhHHHHHHHHHHHHHHHHHHHhhhHHHHhhhc
Confidence 46789999999999999986544 24677788887543
No 348
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.30 E-value=0.0041 Score=59.79 Aligned_cols=31 Identities=29% Similarity=0.237 Sum_probs=27.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCee
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHI 92 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~i 92 (273)
+..+.+|+||+|+||||..+.|++.+|+.++
T Consensus 109 ~~~iLLltGPsGcGKSTtvkvLskelg~~~~ 139 (634)
T KOG1970|consen 109 GSRILLLTGPSGCGKSTTVKVLSKELGYQLI 139 (634)
T ss_pred CceEEEEeCCCCCCchhHHHHHHHhhCceee
Confidence 3456779999999999999999999998765
No 349
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.30 E-value=0.0038 Score=58.10 Aligned_cols=27 Identities=30% Similarity=0.434 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.++..++|+||+|+||||++.+|+..+
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 467789999999999999999999864
No 350
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.28 E-value=0.0039 Score=63.51 Aligned_cols=32 Identities=25% Similarity=0.423 Sum_probs=28.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeec
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHIS 93 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is 93 (273)
++..++|+||||+||||+++.+++.++.+++.
T Consensus 348 ~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~ 379 (784)
T PRK10787 348 KGPILCLVGPPGVGKTSLGQSIAKATGRKYVR 379 (784)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 56689999999999999999999999987654
No 351
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.28 E-value=0.0041 Score=49.90 Aligned_cols=24 Identities=17% Similarity=0.112 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHh
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
++|.|+|+.+|||||+++.|.+.+
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l 24 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL 24 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999998877
No 352
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.27 E-value=0.0038 Score=51.62 Aligned_cols=27 Identities=22% Similarity=0.345 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.+|-.|.|+||+||||||+-+.+|...
T Consensus 27 ~~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 27 RAGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHhcc
Confidence 467789999999999999999998754
No 353
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.26 E-value=0.0093 Score=57.56 Aligned_cols=35 Identities=11% Similarity=0.160 Sum_probs=26.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH----h--CCCeechh
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKL----L--EVPHISMG 95 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~----~--g~~~is~~ 95 (273)
.++..++|.|+|||||||+|..++-. . ++.||+..
T Consensus 19 p~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e 59 (484)
T TIGR02655 19 PIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE 59 (484)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 37889999999999999999998432 2 34566643
No 354
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=96.24 E-value=0.0033 Score=54.32 Aligned_cols=33 Identities=18% Similarity=0.252 Sum_probs=25.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGS 96 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~d 96 (273)
.+..++|.|+||+||||+|+.|+. ...+++.+.
T Consensus 11 ~~~~~liyG~~G~GKtt~a~~~~~--~~~~~~~d~ 43 (220)
T TIGR01618 11 IPNMYLIYGKPGTGKTSTIKYLPG--KTLVLSFDM 43 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHhcCC--CCEEEeccc
Confidence 356799999999999999999963 345565544
No 355
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.24 E-value=0.0033 Score=49.41 Aligned_cols=26 Identities=27% Similarity=0.371 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
++-++.|+|+.||||||+.+.|+..+
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEccCCCccccceeeecccc
Confidence 56789999999999999999998665
No 356
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.0041 Score=61.86 Aligned_cols=72 Identities=19% Similarity=0.272 Sum_probs=50.9
Q ss_pred hhchhhhhh--ccCCCcchhhc-------ccCCCccchhcCCCCCCCCCCeEEEEEcCCCCChhHHHHHHHHHhCCCeec
Q 024067 23 AYGSAAAAQ--LQYDYDEECDL-------HGQASEPMLRLDSAGSPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHIS 93 (273)
Q Consensus 23 ~~~~~~~~~--~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is 93 (273)
.|..+-.|. ..+.|++--++ .+++--|.+--+.+++.-.+.-=|++.||||+|||-+|+.+|-++.+.++|
T Consensus 656 ~fs~aiGAPKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlS 735 (953)
T KOG0736|consen 656 EFSDAIGAPKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLS 735 (953)
T ss_pred hhhhhcCCCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeEEe
Confidence 344443332 45668765444 245556777667776554334458899999999999999999999999988
Q ss_pred h
Q 024067 94 M 94 (273)
Q Consensus 94 ~ 94 (273)
+
T Consensus 736 V 736 (953)
T KOG0736|consen 736 V 736 (953)
T ss_pred e
Confidence 6
No 357
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=96.23 E-value=0.0047 Score=62.25 Aligned_cols=34 Identities=26% Similarity=0.325 Sum_probs=28.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMG 95 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~ 95 (273)
+...++|.||||+||||+++.+++.++..++.+.
T Consensus 51 ~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~ln 84 (725)
T PRK13341 51 RVGSLILYGPPGVGKTTLARIIANHTRAHFSSLN 84 (725)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhcCcceeeh
Confidence 3456789999999999999999999887665543
No 358
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.047 Score=52.61 Aligned_cols=34 Identities=24% Similarity=0.322 Sum_probs=29.4
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhCCCeec
Q 024067 60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHIS 93 (273)
Q Consensus 60 ~~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is 93 (273)
..+-.-+++.||||||||++|..+|..-+||+|.
T Consensus 535 ~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvK 568 (744)
T KOG0741|consen 535 RSPLVSVLLEGPPGSGKTALAAKIALSSDFPFVK 568 (744)
T ss_pred cCcceEEEEecCCCCChHHHHHHHHhhcCCCeEE
Confidence 3345678899999999999999999999999874
No 359
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.22 E-value=0.017 Score=59.18 Aligned_cols=28 Identities=21% Similarity=0.274 Sum_probs=24.7
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~ 90 (273)
+.-++|.|++|+||||+++.|++.+++.
T Consensus 37 ~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~ 64 (824)
T PRK07764 37 NHAYLFSGPRGCGKTSSARILARSLNCV 64 (824)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 3457899999999999999999999864
No 360
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.22 E-value=0.011 Score=54.13 Aligned_cols=75 Identities=20% Similarity=0.164 Sum_probs=44.0
Q ss_pred hhhhhchhhhhhccCCCcchhhcccCCCccchhcCCC---CCCCCCCeEEEEEcCCCCChhHHHHHHHHHh-----CCCe
Q 024067 20 RSRAYGSAAAAQLQYDYDEECDLHGQASEPMLRLDSA---GSPPRRGVQWVLIGDPGVKKHVYADNLSKLL-----EVPH 91 (273)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Ivi~G~pGSGKsT~a~~La~~~-----g~~~ 91 (273)
..+.||..+.-.+.-. +.. -....+..+..+|.. |..| ++..+.|.|||||||||+|..++... .+.+
T Consensus 13 i~~~~g~~~~~~~~~~--~~~-~~~~isTGi~~LD~~Lg~GGlp-~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vy 88 (325)
T cd00983 13 IEKKFGKGSIMKLGDD--AVQ-DVEVIPTGSLSLDIALGIGGYP-KGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAF 88 (325)
T ss_pred HHHHhCCcceEECccc--ccc-CCceecCCCHHHHHHhcCCCcc-CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 3477887765443211 110 112223333333332 3344 77888899999999999999988654 2567
Q ss_pred echhHHH
Q 024067 92 ISMGSLV 98 (273)
Q Consensus 92 is~~dll 98 (273)
|++.+-+
T Consensus 89 Id~E~~~ 95 (325)
T cd00983 89 IDAEHAL 95 (325)
T ss_pred ECccccH
Confidence 7764433
No 361
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.21 E-value=0.0061 Score=52.10 Aligned_cols=35 Identities=29% Similarity=0.284 Sum_probs=28.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh-----CCCeechh
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMG 95 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~-----g~~~is~~ 95 (273)
.++..+.|.|+|||||||+|..++... .+.+++++
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 367889999999999999999999765 24466553
No 362
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=96.20 E-value=0.0047 Score=52.03 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHh
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
..|-|.||||||||++..++.+.+
T Consensus 14 ~~i~v~Gp~GSGKTaLie~~~~~L 37 (202)
T COG0378 14 LRIGVGGPPGSGKTALIEKTLRAL 37 (202)
T ss_pred EEEEecCCCCcCHHHHHHHHHHHH
Confidence 788899999999999988776665
No 363
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.20 E-value=0.0034 Score=57.56 Aligned_cols=47 Identities=23% Similarity=0.282 Sum_probs=34.1
Q ss_pred ccchhcCCCCCC--CCCCeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067 48 EPMLRLDSAGSP--PRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (273)
Q Consensus 48 ~~~~~~~~~~~~--~~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~ 94 (273)
-|..+-+.++-. -..++-|++.||||+|||-+|+.+|++-|..+|++
T Consensus 110 lPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv 158 (386)
T KOG0737|consen 110 LPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINV 158 (386)
T ss_pred hcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCccee
Confidence 444444555311 11345688999999999999999999999877664
No 364
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.20 E-value=0.0045 Score=59.92 Aligned_cols=29 Identities=24% Similarity=0.287 Sum_probs=25.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCe
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPH 91 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~ 91 (273)
+..++|+||||+||||+|+.||+.+++..
T Consensus 43 ~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~ 71 (507)
T PRK06645 43 AGGYLLTGIRGVGKTTSARIIAKAVNCSA 71 (507)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcCcc
Confidence 45789999999999999999999998753
No 365
>COG4240 Predicted kinase [General function prediction only]
Probab=96.19 E-value=0.0056 Score=52.89 Aligned_cols=39 Identities=21% Similarity=0.249 Sum_probs=31.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh---C---CCeechhHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLL---E---VPHISMGSLVR 99 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~---g---~~~is~~dllr 99 (273)
.+|.++.|+||-||||||++..|-..+ | ...+|.||+.-
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYl 92 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYL 92 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhhc
Confidence 468999999999999999998776554 2 45678888774
No 366
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.19 E-value=0.0038 Score=59.25 Aligned_cols=26 Identities=38% Similarity=0.500 Sum_probs=23.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhC
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLE 88 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g 88 (273)
+..|+|.|+||+|||++|+.|+..++
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~ 219 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLT 219 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhc
Confidence 56889999999999999999999885
No 367
>PRK06921 hypothetical protein; Provisional
Probab=96.19 E-value=0.0097 Score=52.92 Aligned_cols=38 Identities=21% Similarity=0.180 Sum_probs=28.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh----C--CCeechhHHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL----E--VPHISMGSLVR 99 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~----g--~~~is~~dllr 99 (273)
....++|.|+||+|||+++..+++.+ | +.+++..+++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~ 159 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFG 159 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHH
Confidence 35678999999999999999998865 2 24566555554
No 368
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.19 E-value=0.0045 Score=59.25 Aligned_cols=28 Identities=32% Similarity=0.483 Sum_probs=25.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~ 90 (273)
+..++|.||||+||||+|+.||+.+++.
T Consensus 40 ~ha~Lf~GP~GtGKTTlAriLAk~Lnce 67 (484)
T PRK14956 40 GHAYIFFGPRGVGKTTIARILAKRLNCE 67 (484)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCcc
Confidence 4458999999999999999999999874
No 369
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=96.17 E-value=0.0053 Score=55.50 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.++..|.|+|+|||||||++..|+..+
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~ 58 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMEL 58 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 357888999999999999999998876
No 370
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=96.17 E-value=0.0046 Score=49.80 Aligned_cols=21 Identities=24% Similarity=0.419 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChhHHHHHHHH
Q 024067 65 QWVLIGDPGVKKHVYADNLSK 85 (273)
Q Consensus 65 ~Ivi~G~pGSGKsT~a~~La~ 85 (273)
+|+|+|+|||||||+..++..
T Consensus 2 ki~v~G~~~~GKTsli~~~~~ 22 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQ 22 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999874
No 371
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.16 E-value=0.0054 Score=52.23 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=24.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLE 88 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g 88 (273)
.++.|.|+|++||||||+...+.+.++
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999998864
No 372
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.16 E-value=0.052 Score=49.45 Aligned_cols=99 Identities=16% Similarity=0.255 Sum_probs=60.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh---CC-CeechhHHHHHHccCC-ChHHHHHHH-HHH-CCCCCCHHHHHHHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLL---EV-PHISMGSLVRQELSPR-SALYKQIAN-AVN-EGKLVPEDVIFALLSK 133 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~---g~-~~is~~dllr~~~~~~-~~~g~~i~~-~l~-~g~~~~~~~~~~ll~~ 133 (273)
.+|..|+++|..|+||||...+||..| |. +.+..+|-.|...-.. ...++.+.- ++. +....|-.++...++.
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~ 216 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQA 216 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHH
Confidence 468899999999999999999999998 33 4566777777532110 011111110 111 2233455566666655
Q ss_pred HHHhcccCCcceEEEeCCCCCHHHHHHHHh
Q 024067 134 RLEEGYYRGESGFILDGIPRTRIQAEILDQ 163 (273)
Q Consensus 134 ~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~ 163 (273)
+... +..-+++|--.|-..+...|++
T Consensus 217 Akar----~~DvvliDTAGRLhnk~nLM~E 242 (340)
T COG0552 217 AKAR----GIDVVLIDTAGRLHNKKNLMDE 242 (340)
T ss_pred HHHc----CCCEEEEeCcccccCchhHHHH
Confidence 5543 4567888877776666555544
No 373
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.15 E-value=0.0051 Score=55.64 Aligned_cols=29 Identities=17% Similarity=0.114 Sum_probs=24.1
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCe
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPH 91 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~ 91 (273)
+..+++.||||+||||+++.+++.++..+
T Consensus 43 ~~~lll~G~~G~GKT~la~~l~~~~~~~~ 71 (316)
T PHA02544 43 PNMLLHSPSPGTGKTTVAKALCNEVGAEV 71 (316)
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHHhCccc
Confidence 44666689999999999999999886543
No 374
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.14 E-value=0.0049 Score=53.35 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
.++-.+.|+||+||||||+-..|+--
T Consensus 29 ~~Ge~vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 29 EAGEFVAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 36788999999999999999988743
No 375
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=96.14 E-value=0.0035 Score=53.83 Aligned_cols=22 Identities=32% Similarity=0.296 Sum_probs=20.3
Q ss_pred EEEEcCCCCChhHHHHHHHHHh
Q 024067 66 WVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 66 Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
|+|.|+|||||||..+.+.+..
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 5799999999999999999984
No 376
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.13 E-value=0.0054 Score=53.65 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.+.+++|+|++||||||+...|-..+
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~~~ 37 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLYYL 37 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhh
Confidence 57799999999999999999887765
No 377
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.0038 Score=58.68 Aligned_cols=29 Identities=21% Similarity=0.485 Sum_probs=25.9
Q ss_pred EEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067 66 WVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (273)
Q Consensus 66 Ivi~G~pGSGKsT~a~~La~~~g~~~is~ 94 (273)
.+|.||||+||||....+|..+++-+.+.
T Consensus 238 YLLYGPPGTGKSS~IaAmAn~L~ydIydL 266 (457)
T KOG0743|consen 238 YLLYGPPGTGKSSFIAAMANYLNYDIYDL 266 (457)
T ss_pred ceeeCCCCCCHHHHHHHHHhhcCCceEEe
Confidence 57999999999999999999999877654
No 378
>CHL00206 ycf2 Ycf2; Provisional
Probab=96.13 E-value=0.005 Score=66.83 Aligned_cols=37 Identities=19% Similarity=0.311 Sum_probs=30.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeec--hhHHHH
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHIS--MGSLVR 99 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is--~~dllr 99 (273)
|.=|+++||||+|||.+|+.||...++|+|+ ..+++.
T Consensus 1630 PKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~ 1668 (2281)
T CHL00206 1630 SRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLD 1668 (2281)
T ss_pred CCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhh
Confidence 4458899999999999999999999988755 566664
No 379
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=96.12 E-value=0.0052 Score=49.00 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCChhHHHHHHHH
Q 024067 64 VQWVLIGDPGVKKHVYADNLSK 85 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~ 85 (273)
.+|+|+|.||+||||+..++..
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~ 23 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQ 23 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999999975
No 380
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.10 E-value=0.0052 Score=51.40 Aligned_cols=26 Identities=35% Similarity=0.461 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.+-++.|+|+.||||||+.+.|+..+
T Consensus 17 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 17 RGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 57789999999999999999998654
No 381
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.08 E-value=0.0052 Score=59.52 Aligned_cols=27 Identities=22% Similarity=0.353 Sum_probs=24.2
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCC
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEV 89 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~ 89 (273)
+..|+|+||||+||||+++.|++.+.+
T Consensus 36 ~ha~Lf~GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 36 GHAYLFSGPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 456799999999999999999999865
No 382
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=96.08 E-value=0.0052 Score=49.34 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHHH
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
.+|+|+|+||+||||+..+|...
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~ 23 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEG 23 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhC
Confidence 37899999999999999999764
No 383
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=96.07 E-value=0.0052 Score=50.15 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=20.4
Q ss_pred EEEEcCCCCChhHHHHHHHHHh
Q 024067 66 WVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 66 Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
|.|+|++||||||++.+|.+.+
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l 23 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKAL 23 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999976
No 384
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=96.07 E-value=0.0054 Score=48.54 Aligned_cols=24 Identities=29% Similarity=0.553 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHH
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
|.+|+++|++|+||||+...|...
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~~ 24 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGR 24 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHCC
Confidence 468999999999999999988753
No 385
>PRK10646 ADP-binding protein; Provisional
Probab=96.07 E-value=0.0078 Score=48.98 Aligned_cols=28 Identities=21% Similarity=0.283 Sum_probs=25.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCC
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEV 89 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~ 89 (273)
.+..|++.|.-|+||||+++.|++.+|+
T Consensus 27 ~g~vi~L~GdLGaGKTtf~rgl~~~Lg~ 54 (153)
T PRK10646 27 GATVIYLYGDLGAGKTTFSRGFLQALGH 54 (153)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 3568999999999999999999999987
No 386
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.07 E-value=0.0058 Score=61.91 Aligned_cols=38 Identities=29% Similarity=0.475 Sum_probs=29.3
Q ss_pred CCCCe-EEEEEcCCCCChhHHHHHHHHHhCCCe--echhHH
Q 024067 60 PRRGV-QWVLIGDPGVKKHVYADNLSKLLEVPH--ISMGSL 97 (273)
Q Consensus 60 ~~~~~-~Ivi~G~pGSGKsT~a~~La~~~g~~~--is~~dl 97 (273)
|.+|. .++|+||||+|||++|+.||+.++..+ +++.++
T Consensus 480 ~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~ 520 (731)
T TIGR02639 480 PNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEY 520 (731)
T ss_pred CCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchh
Confidence 34554 478999999999999999999997654 444443
No 387
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.06 E-value=0.034 Score=54.81 Aligned_cols=28 Identities=21% Similarity=0.299 Sum_probs=24.7
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~ 90 (273)
+..++|.||+|+||||+|+.||+.+++.
T Consensus 35 ~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 62 (584)
T PRK14952 35 NHAYLFSGPRGCGKTSSARILARSLNCA 62 (584)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 4457899999999999999999999864
No 388
>PHA02624 large T antigen; Provisional
Probab=96.06 E-value=0.0067 Score=59.40 Aligned_cols=33 Identities=18% Similarity=0.267 Sum_probs=28.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~ 94 (273)
+...|+|.|||||||||+++.|.+.+|-..+++
T Consensus 430 Kk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsV 462 (647)
T PHA02624 430 KRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNV 462 (647)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEe
Confidence 455899999999999999999999997666664
No 389
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.06 E-value=0.0056 Score=52.10 Aligned_cols=26 Identities=23% Similarity=0.204 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
++-++.|+|+.||||||+.+.|+..+
T Consensus 26 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 26 AGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 57789999999999999999998764
No 390
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=96.05 E-value=0.0058 Score=48.98 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHH
Q 024067 64 VQWVLIGDPGVKKHVYADNLSK 85 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~ 85 (273)
.+|+|+|.||+||||+..++..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~ 23 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQ 23 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4799999999999999998874
No 391
>PF13479 AAA_24: AAA domain
Probab=96.04 E-value=0.0043 Score=53.22 Aligned_cols=31 Identities=23% Similarity=0.361 Sum_probs=24.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMG 95 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~ 95 (273)
++.+++|.|+||+||||++..+ =+..+|+++
T Consensus 2 ~~~~~lIyG~~G~GKTt~a~~~---~k~l~id~E 32 (213)
T PF13479_consen 2 KPIKILIYGPPGSGKTTLAASL---PKPLFIDTE 32 (213)
T ss_pred CceEEEEECCCCCCHHHHHHhC---CCeEEEEeC
Confidence 4678999999999999999988 344566653
No 392
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.013 Score=52.88 Aligned_cols=39 Identities=23% Similarity=0.337 Sum_probs=30.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCe--echhHHHHHH
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPH--ISMGSLVRQE 101 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~--is~~dllr~~ 101 (273)
|+.+.|.||||.|||-+|+.+++.+|+.+ ++++.++.+.
T Consensus 166 Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~ky 206 (388)
T KOG0651|consen 166 PKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKY 206 (388)
T ss_pred CceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhh
Confidence 55667899999999999999999998765 4455565543
No 393
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=96.03 E-value=0.0055 Score=49.14 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHHH
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
.+|+++|+|||||||+..+|...
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~ 23 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDG 23 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 37899999999999999999743
No 394
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.03 E-value=0.0058 Score=52.18 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
++-.+.|+|+.||||||+.+.|+..+
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 57789999999999999999998765
No 395
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.02 E-value=0.0058 Score=52.15 Aligned_cols=26 Identities=19% Similarity=0.360 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.+-++.|+|+.||||||+.+.|+..+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 57789999999999999999999765
No 396
>PRK05642 DNA replication initiation factor; Validated
Probab=96.02 E-value=0.0073 Score=52.60 Aligned_cols=36 Identities=14% Similarity=0.153 Sum_probs=29.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHh-----CCCeechhHHHH
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMGSLVR 99 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~-----g~~~is~~dllr 99 (273)
..++|.|++|+|||.+++.++..+ .+.|++.++++.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~ 86 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLD 86 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHh
Confidence 457899999999999999988643 567888877764
No 397
>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=96.02 E-value=0.0055 Score=55.43 Aligned_cols=35 Identities=20% Similarity=0.217 Sum_probs=31.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGS 96 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~d 96 (273)
+-+.|||+|+.|||||-++-.||.+|+...|+.|.
T Consensus 6 k~KVvvI~G~TGsGKSrLaVdLA~rf~~EIINsDk 40 (348)
T KOG1384|consen 6 KDKVVVIMGATGAGKSRLAVDLATRFPGEIINSDK 40 (348)
T ss_pred CceEEEEecCCCCChhhhHHHHHHhCCceeecccc
Confidence 55789999999999999999999999999998764
No 398
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.02 E-value=0.0066 Score=55.64 Aligned_cols=37 Identities=19% Similarity=0.285 Sum_probs=31.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHh-----CCCeechhHHHHH
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMGSLVRQ 100 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~-----g~~~is~~dllr~ 100 (273)
..++|.|++|+|||+++..+++.+ .+.++++.+++..
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~ 225 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEI 225 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHH
Confidence 568899999999999999999986 4567888777653
No 399
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.01 E-value=0.0048 Score=56.82 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSK 85 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~ 85 (273)
++-.+.|.||+||||||+-+.||-
T Consensus 30 ~Gef~~lLGPSGcGKTTlLR~IAG 53 (352)
T COG3842 30 KGEFVTLLGPSGCGKTTLLRMIAG 53 (352)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 567889999999999999999994
No 400
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.01 E-value=0.0058 Score=51.88 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=17.0
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh
Q 024067 65 QWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 65 ~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
..+|.||||+||||+...+...+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 67899999999997776666654
No 401
>PRK09354 recA recombinase A; Provisional
Probab=96.00 E-value=0.015 Score=53.70 Aligned_cols=122 Identities=16% Similarity=0.148 Sum_probs=62.5
Q ss_pred hhhhhchhhhhhccCCCcchhhcccCCCccchhcCC--C-CCCCCCCeEEEEEcCCCCChhHHHHHHHHHh-----CCCe
Q 024067 20 RSRAYGSAAAAQLQYDYDEECDLHGQASEPMLRLDS--A-GSPPRRGVQWVLIGDPGVKKHVYADNLSKLL-----EVPH 91 (273)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~Ivi~G~pGSGKsT~a~~La~~~-----g~~~ 91 (273)
+-+.||..+.-.+.-.... -....+.-+..+|. . |..| ++..+.|.|+|||||||+|..++... .+.|
T Consensus 18 i~~~~g~~~~~~~~~~~~~---~~~~isTGi~~LD~~LG~GGip-~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~y 93 (349)
T PRK09354 18 IEKQFGKGSIMRLGDDAAM---DVEVISTGSLALDIALGIGGLP-RGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAF 93 (349)
T ss_pred HHHHhCCCCceEccccccc---CCceecCCcHHHHHHhcCCCCc-CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEE
Confidence 3478988876553321000 11222333333333 2 3344 78888999999999999999987654 3567
Q ss_pred echhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCCcceEEEeCC
Q 024067 92 ISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGESGFILDGI 151 (273)
Q Consensus 92 is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~~~g~IlDg~ 151 (273)
|++..-+...... .+|-.+..++-. .+...+....++...+.+. ...-+|||..
T Consensus 94 Id~E~s~~~~~a~--~lGvdld~lli~-qp~~~Eq~l~i~~~li~s~---~~~lIVIDSv 147 (349)
T PRK09354 94 IDAEHALDPVYAK--KLGVDIDNLLVS-QPDTGEQALEIADTLVRSG---AVDLIVVDSV 147 (349)
T ss_pred ECCccchHHHHHH--HcCCCHHHeEEe-cCCCHHHHHHHHHHHhhcC---CCCEEEEeCh
Confidence 7765433321110 111112222211 1122334445555545443 2466899973
No 402
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.00 E-value=0.0066 Score=54.38 Aligned_cols=27 Identities=22% Similarity=0.288 Sum_probs=24.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.+..+|-|+|+||+||||+...|..+|
T Consensus 49 G~a~viGITG~PGaGKSTli~~L~~~l 75 (323)
T COG1703 49 GNAHVIGITGVPGAGKSTLIEALGREL 75 (323)
T ss_pred CCCcEEEecCCCCCchHHHHHHHHHHH
Confidence 467789999999999999999999988
No 403
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=95.98 E-value=0.0065 Score=51.71 Aligned_cols=26 Identities=27% Similarity=0.290 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
++-.+.|+|+.||||||+.+.|+..+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 25 DGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 57789999999999999999999765
No 404
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.98 E-value=0.0065 Score=51.59 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.+-++.|+|+.||||||+.+.|+..+
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 57789999999999999999998654
No 405
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=95.97 E-value=0.0061 Score=48.78 Aligned_cols=21 Identities=19% Similarity=0.309 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChhHHHHHHHH
Q 024067 65 QWVLIGDPGVKKHVYADNLSK 85 (273)
Q Consensus 65 ~Ivi~G~pGSGKsT~a~~La~ 85 (273)
+|+++|+||+||||+..+|..
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~ 22 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMY 22 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 789999999999999998874
No 406
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.97 E-value=0.0041 Score=54.84 Aligned_cols=34 Identities=26% Similarity=0.317 Sum_probs=27.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh-----CCCeech
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISM 94 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~-----g~~~is~ 94 (273)
.++..++|.|+||||||+++.+++... .+.+|++
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~ 59 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVST 59 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 477889999999999999999887765 2456665
No 407
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=0.017 Score=57.32 Aligned_cols=55 Identities=22% Similarity=0.260 Sum_probs=39.9
Q ss_pred ccchhcCCCCCCCCC-CeEEEEEcCCCCChhHHHHHHHHHhCCCeech--hHHHHHHc
Q 024067 48 EPMLRLDSAGSPPRR-GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM--GSLVRQEL 102 (273)
Q Consensus 48 ~~~~~~~~~~~~~~~-~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~--~dllr~~~ 102 (273)
-|..+-..+...|-| +.-|++.||||+|||-++..+|..+++.+||+ -+++.+.+
T Consensus 685 ~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyI 742 (952)
T KOG0735|consen 685 WPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYI 742 (952)
T ss_pred ccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHh
Confidence 344444444433433 34689999999999999999999999999986 35665544
No 408
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=95.97 E-value=0.023 Score=48.99 Aligned_cols=36 Identities=19% Similarity=0.299 Sum_probs=28.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh-------CCCeechhHHHHH
Q 024067 65 QWVLIGDPGVKKHVYADNLSKLL-------EVPHISMGSLVRQ 100 (273)
Q Consensus 65 ~Ivi~G~pGSGKsT~a~~La~~~-------g~~~is~~dllr~ 100 (273)
.++|.|++|+|||.+.+.++.++ .+.|++..++.+.
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~ 78 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIRE 78 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHH
Confidence 47899999999999999998764 2457877776653
No 409
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=95.96 E-value=0.0065 Score=51.73 Aligned_cols=26 Identities=27% Similarity=0.290 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.+-++.|+|+.||||||+.+.|+..+
T Consensus 27 ~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 27 KGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 57789999999999999999998654
No 410
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.96 E-value=0.006 Score=51.88 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
++ ++.|+|+.||||||+.+.|+..+
T Consensus 25 ~g-~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 25 PG-MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred CC-cEEEECCCCCCHHHHHHHHhCCC
Confidence 36 89999999999999999998654
No 411
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.96 E-value=0.012 Score=57.08 Aligned_cols=34 Identities=18% Similarity=0.293 Sum_probs=27.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh-----CCCeechh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMG 95 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~-----g~~~is~~ 95 (273)
++..++|.|+||+|||+++..++... .+.++++.
T Consensus 272 ~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e 310 (509)
T PRK09302 272 RGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFE 310 (509)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 57788899999999999999987654 45666653
No 412
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.95 E-value=0.098 Score=46.65 Aligned_cols=26 Identities=23% Similarity=0.231 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
++..|+|+|++|+||||+...|+..+
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l 99 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQF 99 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHH
Confidence 45799999999999999999998876
No 413
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=95.95 E-value=0.0054 Score=48.80 Aligned_cols=21 Identities=29% Similarity=0.392 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChhHHHHHHHH
Q 024067 65 QWVLIGDPGVKKHVYADNLSK 85 (273)
Q Consensus 65 ~Ivi~G~pGSGKsT~a~~La~ 85 (273)
+|+|+|++||||||+..+|..
T Consensus 1 ki~i~G~~~~GKTsli~~l~~ 21 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVK 21 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHh
Confidence 488999999999999999864
No 414
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.95 E-value=0.0068 Score=51.49 Aligned_cols=26 Identities=19% Similarity=0.336 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.+-++.|+|+.||||||+.+.|+..+
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 57789999999999999999999654
No 415
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.94 E-value=0.0041 Score=53.62 Aligned_cols=26 Identities=23% Similarity=0.471 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
.++-.++|.|+||+||||++..++..
T Consensus 18 ~~G~~~~i~G~~G~GKT~l~~~~~~~ 43 (229)
T TIGR03881 18 PRGFFVAVTGEPGTGKTIFCLHFAYK 43 (229)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHHH
Confidence 36889999999999999999987643
No 416
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=95.94 E-value=0.0068 Score=51.83 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
++-.+.|+|+.||||||+.+.|+..+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 27 KGEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 57789999999999999999998654
No 417
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=95.93 E-value=0.0062 Score=52.65 Aligned_cols=26 Identities=31% Similarity=0.336 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.+-++.|+|+.||||||+.+.|+..+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 25 PGEIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 57789999999999999999998654
No 418
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=95.93 E-value=0.0069 Score=49.24 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHH
Q 024067 64 VQWVLIGDPGVKKHVYADNLSK 85 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~ 85 (273)
.+|+|+|.|||||||+..++.+
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~ 23 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQ 23 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999999864
No 419
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=95.93 E-value=0.007 Score=51.45 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
++-++.|+|+.||||||+.+.|+..+
T Consensus 25 ~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 25 KGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 57889999999999999999998654
No 420
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=95.93 E-value=0.0069 Score=51.81 Aligned_cols=27 Identities=26% Similarity=0.354 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.++-.+.|+|+.||||||+.+.|+..+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 24 PEGEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 357899999999999999999998654
No 421
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.93 E-value=0.0091 Score=40.97 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=19.3
Q ss_pred CeEEEEEcCCCCChhHHHHHHHH
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSK 85 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~ 85 (273)
+...+|+|+.||||||+-..+.-
T Consensus 23 g~~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 44788999999999999887754
No 422
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.92 E-value=0.0068 Score=52.54 Aligned_cols=27 Identities=30% Similarity=0.350 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.++-++.|+|+.||||||+.+.|+..+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 25 NPGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 367889999999999999999998654
No 423
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.92 E-value=0.0086 Score=51.65 Aligned_cols=27 Identities=19% Similarity=0.185 Sum_probs=23.5
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 60 PRRGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 60 ~~~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
..++..+.|.|+||||||+++..++..
T Consensus 16 i~~g~i~~i~G~~GsGKT~l~~~l~~~ 42 (235)
T cd01123 16 IETGSITEIFGEFGSGKTQLCHQLAVT 42 (235)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 347889999999999999999999844
No 424
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=95.92 E-value=0.0069 Score=51.19 Aligned_cols=26 Identities=23% Similarity=0.454 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
++-++.|+|+.||||||+.+.|+..+
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 23 KGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 57789999999999999999998654
No 425
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=95.92 E-value=0.0068 Score=49.01 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHHH
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
++|+|+|++|+||||+..+|...
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~ 23 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTG 23 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhC
Confidence 47899999999999999999754
No 426
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.92 E-value=0.057 Score=47.11 Aligned_cols=91 Identities=23% Similarity=0.299 Sum_probs=52.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh----CCCeechhHHH---HHH---cc-------CC------ChHHHHHHHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLL----EVPHISMGSLV---RQE---LS-------PR------SALYKQIANAVN 117 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~----g~~~is~~dll---r~~---~~-------~~------~~~g~~i~~~l~ 117 (273)
.++-...|+||+||||||+-+.+.-.+ |-..|.-.++- +.+ +. .. -...+-+.-.+.
T Consensus 32 ~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplr 111 (263)
T COG1127 32 PRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLR 111 (263)
T ss_pred cCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhheehH
Confidence 368888999999999999999998765 22233222211 100 00 00 011122222233
Q ss_pred CCCCCCHHHHHHHHHHHHHhcccCCcceEEEeCCCCC
Q 024067 118 EGKLVPEDVIFALLSKRLEEGYYRGESGFILDGIPRT 154 (273)
Q Consensus 118 ~g~~~~~~~~~~ll~~~l~~~~~~~~~g~IlDg~P~~ 154 (273)
+...+|+..+..++..+++.- +-.+-+.|-||..
T Consensus 112 e~~~lp~~~i~~lv~~KL~~V---GL~~~~~~~~PsE 145 (263)
T COG1127 112 EHTKLPESLIRELVLMKLELV---GLRGAAADLYPSE 145 (263)
T ss_pred hhccCCHHHHHHHHHHHHHhc---CCChhhhhhCchh
Confidence 334467788888888888763 3356667778865
No 427
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=95.92 E-value=0.0074 Score=43.65 Aligned_cols=22 Identities=41% Similarity=0.508 Sum_probs=20.4
Q ss_pred EEEEcCCCCChhHHHHHHHHHh
Q 024067 66 WVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 66 Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
+++.|.+|+||||++..|+..+
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l 23 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAAL 23 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999887
No 428
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.91 E-value=0.007 Score=52.40 Aligned_cols=26 Identities=31% Similarity=0.408 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.+-++.|+|+.||||||+.+.|+..+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 25 RGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 57789999999999999999998654
No 429
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.91 E-value=0.0072 Score=51.46 Aligned_cols=26 Identities=23% Similarity=0.279 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.+-++.|+|+.||||||+.+.|+..+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 25 PGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 57789999999999999999998654
No 430
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.90 E-value=0.0076 Score=49.98 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
++-.+.|+|+.||||||+.+.|+..+
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 57789999999999999999998654
No 431
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=95.90 E-value=0.0071 Score=56.31 Aligned_cols=28 Identities=18% Similarity=0.196 Sum_probs=25.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCC
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEV 89 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~ 89 (273)
+|..|.|+|++||||||++..|.+++.-
T Consensus 4 ~~~~i~i~G~~gsGKTTl~~~l~~~l~~ 31 (369)
T PRK14490 4 HPFEIAFCGYSGSGKTTLITALVRRLSE 31 (369)
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHHhh
Confidence 7889999999999999999999998863
No 432
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.90 E-value=0.0073 Score=61.66 Aligned_cols=28 Identities=25% Similarity=0.306 Sum_probs=24.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~ 90 (273)
+..++|+||||+||||+|+.|++.+++.
T Consensus 38 ~HAyLFtGPpGtGKTTLARiLAk~Lnce 65 (944)
T PRK14949 38 HHAYLFTGTRGVGKTSLARLFAKGLNCE 65 (944)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhccCc
Confidence 4456899999999999999999999875
No 433
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=95.90 E-value=0.042 Score=50.73 Aligned_cols=113 Identities=15% Similarity=0.147 Sum_probs=69.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCC
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRG 142 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~ 142 (273)
...+++.|+.|||||++...|.+. +...|+..++.+.. ++.+|.. . +..-+...+...|...+... ..
T Consensus 141 ~~~ivl~G~TGsGKT~iL~~L~~~-~~~vlDlE~~aehr---GS~fG~~-----~-~~qpsQ~~Fe~~l~~~l~~~--~~ 208 (345)
T PRK11784 141 FPLVVLGGNTGSGKTELLQALANA-GAQVLDLEGLANHR---GSSFGRL-----G-GPQPSQKDFENLLAEALLKL--DP 208 (345)
T ss_pred CceEecCCCCcccHHHHHHHHHhc-CCeEEECCchhhhc---cccccCC-----C-CCCcchHHHHHHHHHHHHcC--CC
Confidence 345779999999999999999876 77889887776542 3333321 0 01112334556666666653 22
Q ss_pred cceEEEeCCCCCHHHH----HHHHhhCCCceEEEEccCHHHHHHHHhcCC
Q 024067 143 ESGFILDGIPRTRIQA----EILDQIVDVDLVINFKSIEDQLVKRNLESE 188 (273)
Q Consensus 143 ~~g~IlDg~P~~~~qa----~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (273)
...+++.+-.+.+... ..++.+.. .-+|.+++|.+..++|+...-
T Consensus 209 ~~~i~vE~Es~~IG~~~lP~~l~~~m~~-~~~v~i~~~~e~Rv~~l~~~Y 257 (345)
T PRK11784 209 ARPIVVEDESRRIGRVHLPEALYEAMQQ-APIVVVEAPLEERVERLLEDY 257 (345)
T ss_pred CCeEEEEeccccccCccCCHHHHHHHhh-CCEEEEECCHHHHHHHHHHHh
Confidence 4667777543332221 11222211 247899999999999997654
No 434
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=95.90 E-value=0.0077 Score=51.79 Aligned_cols=26 Identities=31% Similarity=0.373 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.+-.+.|+|+.||||||+.+.|+..+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 25 KGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 57889999999999999999999765
No 435
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=95.89 E-value=0.11 Score=48.82 Aligned_cols=29 Identities=24% Similarity=0.497 Sum_probs=25.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~ 90 (273)
.+.-++|.||||+||||+|..+|+.+.+.
T Consensus 35 l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~ 63 (394)
T PRK07940 35 MTHAWLFTGPPGSGRSVAARAFAAALQCT 63 (394)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 35568899999999999999999998664
No 436
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=95.89 E-value=0.0074 Score=51.64 Aligned_cols=26 Identities=23% Similarity=0.302 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
++-++.|+|+.||||||+.+.|+..+
T Consensus 30 ~G~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 30 KGEIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 57789999999999999999998764
No 437
>TIGR01223 Pmev_kin_anim phosphomevalonate kinase, animal type. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found. One is this type, found in animals. The other is the ERG8 type, found in plants and fungi (TIGR01219) and in Gram-positive bacteria (TIGR01220).
Probab=95.89 E-value=0.097 Score=43.56 Aligned_cols=111 Identities=7% Similarity=0.136 Sum_probs=65.4
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCC---CeechhHHHHHHccCCChHHHHHHHHHHCCCCC-----------------CH
Q 024067 65 QWVLIGDPGVKKHVYADNLSKLLEV---PHISMGSLVRQELSPRSALYKQIANAVNEGKLV-----------------PE 124 (273)
Q Consensus 65 ~Ivi~G~pGSGKsT~a~~La~~~g~---~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~-----------------~~ 124 (273)
+|+|+|..+|||.|++..|.+.++. ..++..+-+..+... .+|..+...+..+..- ..
T Consensus 1 iilisGKrksGKD~~a~~l~~~l~~~~~~~vriS~piK~~~A~--~~gld~~~Ll~d~~YKE~~R~~mi~w~e~~r~~dp 78 (182)
T TIGR01223 1 VLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQ--EHGLNFQRLLDTSTYKEAFRKDMIRWGEEKRQADP 78 (182)
T ss_pred CEEEecCCCCChHHHHHHHHHhhccccceEEEecHHHHHHHHH--HhChhHHHhcCCcccchhhhHHHHHHHHHHHhhCc
Confidence 4789999999999999999999874 245555555444331 1122222222221110 11
Q ss_pred HHHHHHHHHHHHhcccCCcceEEEeCCCCCHHHHHHHHhhC-CCceEEEEccCHHHHHHHH
Q 024067 125 DVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIV-DVDLVINFKSIEDQLVKRN 184 (273)
Q Consensus 125 ~~~~~ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~-~~d~vI~L~~~~e~l~~Rl 184 (273)
+.+++.+...+ ....|||++. |...+...|.+.. .--+.|-+.+++++..+|.
T Consensus 79 ~~F~r~~~~~~------~~~v~iIsD~-Rr~~dv~~f~~~~g~~~~~VRV~AseetR~~Rg 132 (182)
T TIGR01223 79 GFFCRKIVEGI------SQPIWLVSDT-RRVSDIQWFREAYGAVTQTVRVVALEQSRQQRG 132 (182)
T ss_pred cHHHHHHHhcc------CCCEEEEeCC-CcccHHHHHHHHcCCceEEEEEecCHHHHHHHH
Confidence 23333332211 2357788876 4445566665443 3346899999999998887
No 438
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=95.88 E-value=0.0066 Score=47.82 Aligned_cols=22 Identities=36% Similarity=0.460 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHH
Q 024067 64 VQWVLIGDPGVKKHVYADNLSK 85 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~ 85 (273)
.+|+++|+|||||||+...|..
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~ 22 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVD 22 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999998853
No 439
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=95.88 E-value=0.011 Score=50.79 Aligned_cols=35 Identities=26% Similarity=0.234 Sum_probs=28.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh-----CCCeechh
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMG 95 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~-----g~~~is~~ 95 (273)
.++..+.|.|+||+|||++|..++... .+.++++.
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 468899999999999999999998644 35677664
No 440
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.88 E-value=0.0074 Score=52.11 Aligned_cols=27 Identities=22% Similarity=0.346 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
..+-.+.|+|+.||||||+.+.|+..+
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 29 PKGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 357899999999999999999999765
No 441
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=95.88 E-value=0.0072 Score=48.55 Aligned_cols=22 Identities=18% Similarity=0.498 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHH
Q 024067 64 VQWVLIGDPGVKKHVYADNLSK 85 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~ 85 (273)
.+|+|+|++|+||||+..+|..
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~ 22 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVE 22 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3789999999999999999864
No 442
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=95.88 E-value=0.0079 Score=47.04 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHHH
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
.+|+|+|.+||||||+...|...
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~ 24 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGN 24 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999988754
No 443
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.87 E-value=0.007 Score=60.41 Aligned_cols=30 Identities=23% Similarity=0.515 Sum_probs=27.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (273)
Q Consensus 65 ~Ivi~G~pGSGKsT~a~~La~~~g~~~is~ 94 (273)
-|+|.||||+||||+++.+++.++++++..
T Consensus 187 gill~G~~G~GKt~~~~~~a~~~~~~f~~i 216 (644)
T PRK10733 187 GVLMVGPPGTGKTLLAKAIAGEAKVPFFTI 216 (644)
T ss_pred cEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 488999999999999999999999887654
No 444
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=95.87 E-value=0.0068 Score=49.06 Aligned_cols=23 Identities=22% Similarity=0.462 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHHH
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
.+|+|+|++||||||+..+|...
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~ 23 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNK 23 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 37899999999999999988653
No 445
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.87 E-value=0.008 Score=58.66 Aligned_cols=27 Identities=26% Similarity=0.373 Sum_probs=23.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCC
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEV 89 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~ 89 (273)
+..++|.||||+||||+|+.||+.+++
T Consensus 38 ~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 38 HHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 345789999999999999999999875
No 446
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=95.86 E-value=0.008 Score=49.73 Aligned_cols=25 Identities=16% Similarity=0.405 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~ 85 (273)
.+..+|+++|++||||||+..+|..
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~ 36 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKN 36 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHS
T ss_pred CcEEEEEEECCCccchHHHHHHhhh
Confidence 5678999999999999999999974
No 447
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=95.86 E-value=0.0074 Score=52.43 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.++.++|.||||.||||-...||..+
T Consensus 47 nmP~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 47 NMPNLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred CCCceEeeCCCCCchhhHHHHHHHHH
Confidence 46789999999999999999999876
No 448
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=95.86 E-value=0.0076 Score=52.36 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
..+-.+.|+|+.||||||+.+.|+..+
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 26 NPGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 357789999999999999999998654
No 449
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.85 E-value=0.0076 Score=51.05 Aligned_cols=26 Identities=31% Similarity=0.379 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.+-++.|+|+.||||||+.+.|+..+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 57789999999999999999998654
No 450
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.85 E-value=0.0078 Score=57.97 Aligned_cols=28 Identities=29% Similarity=0.337 Sum_probs=24.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~ 90 (273)
+..++|.||||+||||+|+.||+.+++.
T Consensus 35 ~ha~Lf~Gp~G~GKTT~ArilAk~LnC~ 62 (491)
T PRK14964 35 PQSILLVGASGVGKTTCARIISLCLNCS 62 (491)
T ss_pred CceEEEECCCCccHHHHHHHHHHHHcCc
Confidence 4578999999999999999999988764
No 451
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.85 E-value=0.008 Score=50.57 Aligned_cols=26 Identities=12% Similarity=0.148 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.+-++.|+|++||||||+.+.|+..+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 25 PSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 56789999999999999999998764
No 452
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.85 E-value=0.0082 Score=56.44 Aligned_cols=28 Identities=25% Similarity=0.356 Sum_probs=24.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~ 90 (273)
+.-++|.||||+||||+|..+|+.+.+.
T Consensus 38 ~ha~lf~Gp~G~GKtt~A~~~a~~l~c~ 65 (397)
T PRK14955 38 GHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (397)
T ss_pred ceeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 3458899999999999999999999874
No 453
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.85 E-value=0.0081 Score=49.76 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.+-++.|+|+.||||||+.+.|+..+
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 57789999999999999999998654
No 454
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.84 E-value=0.0082 Score=49.54 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
++-.+.|+|+.||||||+.+.|+..+
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 57789999999999999999998654
No 455
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.84 E-value=0.008 Score=52.49 Aligned_cols=27 Identities=19% Similarity=0.281 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.++-.+.|+||+||||||+-+.+|-..
T Consensus 27 ~~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 27 EKGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367789999999999999999998544
No 456
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.84 E-value=0.009 Score=53.65 Aligned_cols=25 Identities=20% Similarity=0.216 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
...|-|+|+|||||||+...|.+.+
T Consensus 104 ~~~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 104 QLVLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5677899999999999999988876
No 457
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=95.83 E-value=0.0085 Score=53.04 Aligned_cols=26 Identities=15% Similarity=0.183 Sum_probs=23.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhC
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLE 88 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g 88 (273)
+..|+|+|++||||||+...|.+.+.
T Consensus 127 ~~~ili~G~tGSGKTT~l~all~~i~ 152 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLLNALLEEIP 152 (270)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHCH
T ss_pred ceEEEEECCCccccchHHHHHhhhcc
Confidence 57899999999999999999998773
No 458
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=95.83 E-value=0.0085 Score=53.52 Aligned_cols=24 Identities=17% Similarity=0.209 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHh
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
+.|.|+|++||||||++..|+..+
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L 25 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRL 25 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999988
No 459
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.83 E-value=0.0079 Score=52.24 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
++-++.|+|+.||||||+.+.|+..+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 27 SGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 57789999999999999999998765
No 460
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=95.83 E-value=0.0078 Score=49.73 Aligned_cols=28 Identities=25% Similarity=0.444 Sum_probs=24.2
Q ss_pred CCCCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 59 PPRRGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 59 ~~~~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
.+.+...|+|+|.+|+||||+..+|...
T Consensus 14 ~~~~~~~i~ivG~~~~GKStlin~l~~~ 41 (179)
T TIGR03598 14 PPDDGPEIAFAGRSNVGKSSLINALTNR 41 (179)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3467789999999999999999998764
No 461
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=95.82 E-value=0.008 Score=55.38 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.+..++|.||||+|||++++.+.+.+
T Consensus 39 ~~~~i~I~G~~GtGKT~l~~~~~~~l 64 (365)
T TIGR02928 39 RPSNVFIYGKTGTGKTAVTKYVMKEL 64 (365)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999998865
No 462
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.82 E-value=0.0077 Score=51.59 Aligned_cols=26 Identities=23% Similarity=0.279 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
++-++.|+|+.||||||+.+.|+..+
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 29 EGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 57789999999999999999998654
No 463
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.82 E-value=0.008 Score=50.51 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
++-++.|+|++||||||+.+.|+..
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 5778999999999999999999853
No 464
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=95.82 E-value=0.0074 Score=51.39 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.+-++.|+|+.||||||+.+.|+..+
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 24 PGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 57789999999999999999998654
No 465
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=95.81 E-value=0.0087 Score=52.72 Aligned_cols=29 Identities=10% Similarity=0.292 Sum_probs=25.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCC
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEV 89 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g~ 89 (273)
.++-+++|+|++|+||||+++.+++.+..
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 47889999999999999999999987754
No 466
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=95.81 E-value=0.0082 Score=51.93 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.+-++.|+|+.||||||+.+.|+..+
T Consensus 34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 34 EGEMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 56789999999999999999998754
No 467
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.80 E-value=0.0095 Score=52.70 Aligned_cols=33 Identities=9% Similarity=0.078 Sum_probs=27.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh-----CCCeech
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISM 94 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~-----g~~~is~ 94 (273)
++..++|.|+||+||||+|..++... .+.|+++
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~ 72 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTV 72 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 67889999999999999999987643 3566765
No 468
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=95.80 E-value=0.028 Score=54.33 Aligned_cols=28 Identities=29% Similarity=0.382 Sum_probs=25.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCe
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLLEVPH 91 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~ 91 (273)
.-.++.||-|+||||+|+.+|+.+++..
T Consensus 39 hAYlfsG~RGvGKTt~Ari~AkalNC~~ 66 (515)
T COG2812 39 HAYLFSGPRGVGKTTIARILAKALNCEN 66 (515)
T ss_pred hhhhhcCCCCcCchhHHHHHHHHhcCCC
Confidence 3467999999999999999999999875
No 469
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=95.80 E-value=0.008 Score=51.59 Aligned_cols=27 Identities=30% Similarity=0.492 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.++-++.|+|+.||||||+.+.|+..+
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 29 KKGETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367899999999999999999998655
No 470
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=95.80 E-value=0.0083 Score=49.25 Aligned_cols=22 Identities=14% Similarity=0.212 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHH
Q 024067 64 VQWVLIGDPGVKKHVYADNLSK 85 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~ 85 (273)
.+|+|+|.||+||||+..++..
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~ 23 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVE 23 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999998874
No 471
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.80 E-value=0.082 Score=52.46 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=24.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~ 90 (273)
+..++|.|++|+||||+++.|++.+++.
T Consensus 38 ~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~ 65 (618)
T PRK14951 38 HHAYLFTGTRGVGKTTVSRILAKSLNCQ 65 (618)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4567899999999999999999999863
No 472
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.80 E-value=0.009 Score=49.29 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.++-.+.|+|+.||||||+.+.|+..+
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 26 EPGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 357789999999999999999998654
No 473
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.80 E-value=0.0092 Score=59.19 Aligned_cols=28 Identities=29% Similarity=0.370 Sum_probs=25.2
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~ 90 (273)
+..++|.||||+||||+|+.||+.+++.
T Consensus 37 ~HAyLF~GPpGvGKTTlAriLAK~LnC~ 64 (702)
T PRK14960 37 HHAYLFTGTRGVGKTTIARILAKCLNCE 64 (702)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4577899999999999999999999874
No 474
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.80 E-value=0.0086 Score=51.29 Aligned_cols=26 Identities=35% Similarity=0.479 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.+-++.|+|+.||||||+.+.|+..+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 25 RGEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 57789999999999999999998654
No 475
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=95.80 E-value=0.9 Score=43.93 Aligned_cols=33 Identities=15% Similarity=0.157 Sum_probs=28.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCeec
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHIS 93 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is 93 (273)
..++.|++.|..+|||+...++|.+.++=..+.
T Consensus 297 ~~~vlivfeG~DaAGKgg~I~rl~~~ldPrg~~ 329 (493)
T TIGR03708 297 KRSLVLVFEGWDAAGKGGAIRRVTEALDARQYR 329 (493)
T ss_pred CCCEEEEEEcccCCCCcHHHHHHHhhcCCCeeE
Confidence 468999999999999999999999998644443
No 476
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.79 E-value=0.009 Score=49.06 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.+-++.|+|+.||||||+.+.|+..+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 57789999999999999999998654
No 477
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=95.79 E-value=0.0085 Score=52.33 Aligned_cols=26 Identities=23% Similarity=0.256 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
++-++.|+|+.||||||+.+.|+..+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 28 PGEVVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 57789999999999999999998654
No 478
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=95.79 E-value=0.0086 Score=51.92 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.+-++.|+|+.||||||+.+.|+..+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 26 PGEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 57899999999999999999998654
No 479
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=95.78 E-value=0.008 Score=48.28 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHH
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
+.+|+++|.+|+||||+..+|...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~ 25 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGE 25 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCc
Confidence 568999999999999999999754
No 480
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.78 E-value=0.0086 Score=52.12 Aligned_cols=26 Identities=31% Similarity=0.422 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
+|-.+-|+|++||||||+++.|+-..
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhccc
Confidence 57788899999999999999998543
No 481
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=95.78 E-value=0.012 Score=47.54 Aligned_cols=29 Identities=31% Similarity=0.377 Sum_probs=26.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCC
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEV 89 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g~ 89 (273)
..+..|++.|.-||||||+++-|++.+|.
T Consensus 23 ~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~ 51 (149)
T COG0802 23 KAGDVVLLSGDLGAGKTTLVRGIAKGLGV 51 (149)
T ss_pred CCCCEEEEEcCCcCChHHHHHHHHHHcCC
Confidence 35789999999999999999999999985
No 482
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=95.78 E-value=0.0084 Score=51.68 Aligned_cols=26 Identities=31% Similarity=0.431 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
++-++.|+|+.||||||+.+.|+..+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 25 KGEVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 67899999999999999999999765
No 483
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.78 E-value=0.056 Score=51.63 Aligned_cols=36 Identities=11% Similarity=0.243 Sum_probs=29.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh-----C--CCeechhHHHHH
Q 024067 65 QWVLIGDPGVKKHVYADNLSKLL-----E--VPHISMGSLVRQ 100 (273)
Q Consensus 65 ~Ivi~G~pGSGKsT~a~~La~~~-----g--~~~is~~dllr~ 100 (273)
-++|.|+||+|||++++.++.++ + +.+++..+++.+
T Consensus 150 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~ 192 (450)
T PRK00149 150 PLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTND 192 (450)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHH
Confidence 47899999999999999999886 2 457787776543
No 484
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.77 E-value=0.0091 Score=55.65 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.+..++|.|+||+|||++++.+++.+
T Consensus 54 ~~~~~lI~G~~GtGKT~l~~~v~~~l 79 (394)
T PRK00411 54 RPLNVLIYGPPGTGKTTTVKKVFEEL 79 (394)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 45568899999999999999999876
No 485
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=95.77 E-value=0.0082 Score=52.55 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
++-+++|+|++||||||+.+.|+..+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (253)
T TIGR02323 28 PGEVLGIVGESGSGKSTLLGCLAGRL 53 (253)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999999765
No 486
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=95.77 E-value=0.009 Score=50.65 Aligned_cols=27 Identities=19% Similarity=0.357 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.++-.+.|+|+.||||||+.+.|+..+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 24 KKGEIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 357889999999999999999998654
No 487
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=95.76 E-value=0.0089 Score=51.56 Aligned_cols=26 Identities=23% Similarity=0.207 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.+-++.|+|+.||||||+.+.|+..+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 25 QGEIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 57789999999999999999998654
No 488
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.76 E-value=0.0087 Score=52.13 Aligned_cols=26 Identities=19% Similarity=0.496 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.+-++.|+|+.||||||+.+.|+..+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (241)
T PRK14250 28 GGAIYTIVGPSGAGKSTLIKLINRLI 53 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 57789999999999999999999765
No 489
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.76 E-value=0.0088 Score=49.76 Aligned_cols=26 Identities=23% Similarity=0.110 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
++-.+.|+|+.||||||+.+.|+..+
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 57789999999999999999998765
No 490
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.76 E-value=0.0092 Score=50.41 Aligned_cols=27 Identities=26% Similarity=0.263 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.++-++.|+|+.||||||+.+.|+..+
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 25 PAGGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 367899999999999999999998654
No 491
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.76 E-value=0.021 Score=53.27 Aligned_cols=34 Identities=24% Similarity=0.243 Sum_probs=28.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC-------CCeechh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLE-------VPHISMG 95 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g-------~~~is~~ 95 (273)
.+.+|.|+||.|+||||...+||.+|. +-.|++|
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtD 242 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTD 242 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEec
Confidence 377889999999999999999999885 3456664
No 492
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.76 E-value=0.045 Score=54.13 Aligned_cols=29 Identities=28% Similarity=0.322 Sum_probs=25.6
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCe
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPH 91 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~ 91 (273)
+.-++|+||+|+||||+|+.||+.+++..
T Consensus 46 ~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~ 74 (598)
T PRK09111 46 AQAFMLTGVRGVGKTTTARILARALNYEG 74 (598)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhCcCC
Confidence 45689999999999999999999998753
No 493
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.75 E-value=0.0095 Score=49.49 Aligned_cols=27 Identities=26% Similarity=0.343 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.++-++.|+|+.||||||+.+.|+..+
T Consensus 23 ~~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 23 EAGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367899999999999999999998754
No 494
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=95.75 E-value=0.0091 Score=51.44 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
++-.+.|+|+.||||||+.+.|+..+
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (225)
T PRK10247 32 AGEFKLITGPSGCGKSTLLKIVASLI 57 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 57789999999999999999998654
No 495
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=95.75 E-value=0.009 Score=49.56 Aligned_cols=24 Identities=13% Similarity=0.198 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSK 85 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~ 85 (273)
+..+|+|+|++||||||+..+|..
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~ 41 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKD 41 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 567889999999999999999874
No 496
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=95.75 E-value=0.009 Score=51.16 Aligned_cols=26 Identities=19% Similarity=0.157 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.+-.+.|+|+.||||||+.+.|+..+
T Consensus 12 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 12 YHEHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 57789999999999999999998654
No 497
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.75 E-value=0.0088 Score=49.92 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
..+-++.|+|+.||||||+.+.|+..+
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 357799999999999999999998754
No 498
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.74 E-value=0.0085 Score=52.31 Aligned_cols=27 Identities=33% Similarity=0.459 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.++-.++|+|++||||||+.+.|+--+
T Consensus 28 ~~Ge~~~i~G~nGsGKSTL~~~l~GLl 54 (235)
T COG1122 28 EKGERVLLIGPNGSGKSTLLKLLNGLL 54 (235)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCcC
Confidence 357799999999999999999998654
No 499
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.74 E-value=0.0092 Score=54.00 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
...|+|+|++||||||+.+.|...+
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i 156 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEI 156 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999999876
No 500
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.73 E-value=0.01 Score=53.75 Aligned_cols=25 Identities=16% Similarity=0.097 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
.+..+.|+|+|||||||+|..++-.
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~ 118 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVN 118 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 6788889999999999999999865
Done!