Query 024067
Match_columns 273
No_of_seqs 191 out of 1570
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 17:37:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024067.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024067hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sr0_A Adenylate kinase; phosp 100.0 6.7E-45 2.3E-49 310.1 20.8 192 64-260 1-205 (206)
2 3umf_A Adenylate kinase; rossm 100.0 2.3E-41 7.9E-46 290.1 24.8 189 61-262 27-216 (217)
3 3gmt_A Adenylate kinase; ssgci 100.0 8.5E-42 2.9E-46 294.2 21.2 196 62-259 7-229 (230)
4 3tlx_A Adenylate kinase 2; str 100.0 3.7E-36 1.3E-40 262.0 24.0 196 61-258 27-242 (243)
5 3dl0_A Adenylate kinase; phosp 100.0 1.3E-34 4.5E-39 246.7 21.7 194 64-259 1-214 (216)
6 3fb4_A Adenylate kinase; psych 100.0 6E-34 2E-38 242.4 22.6 194 64-259 1-214 (216)
7 1ak2_A Adenylate kinase isoenz 100.0 6E-33 2E-37 239.8 24.8 199 60-260 13-231 (233)
8 3be4_A Adenylate kinase; malar 100.0 1.9E-33 6.4E-38 240.5 21.2 194 62-257 4-217 (217)
9 1aky_A Adenylate kinase; ATP:A 100.0 1.1E-32 3.6E-37 235.9 24.1 195 62-258 3-218 (220)
10 1e4v_A Adenylate kinase; trans 100.0 2E-32 6.8E-37 233.3 20.2 192 64-257 1-213 (214)
11 2xb4_A Adenylate kinase; ATP-b 100.0 1.1E-31 3.8E-36 230.6 21.0 191 64-257 1-222 (223)
12 1zd8_A GTP:AMP phosphotransfer 100.0 3.1E-31 1.1E-35 227.9 22.8 198 61-262 5-217 (227)
13 1zak_A Adenylate kinase; ATP:A 100.0 5.5E-30 1.9E-34 219.2 19.8 197 61-260 3-211 (222)
14 1ukz_A Uridylate kinase; trans 100.0 1.5E-27 5.3E-32 200.8 22.4 188 60-259 12-201 (203)
15 2c95_A Adenylate kinase 1; tra 100.0 3.2E-27 1.1E-31 197.1 23.0 186 62-260 8-194 (196)
16 1qf9_A UMP/CMP kinase, protein 100.0 6.4E-27 2.2E-31 194.4 23.8 183 62-259 5-191 (194)
17 2cdn_A Adenylate kinase; phosp 100.0 1.4E-27 4.8E-32 201.1 19.6 179 60-258 17-200 (201)
18 2bwj_A Adenylate kinase 5; pho 100.0 5.1E-27 1.7E-31 196.3 21.7 186 62-260 11-197 (199)
19 3cm0_A Adenylate kinase; ATP-b 100.0 5E-27 1.7E-31 194.7 20.4 178 62-258 3-185 (186)
20 1tev_A UMP-CMP kinase; ploop, 100.0 2.2E-26 7.4E-31 191.5 22.9 186 62-259 2-194 (196)
21 2bbw_A Adenylate kinase 4, AK4 99.9 5.7E-24 2E-28 184.7 24.6 197 62-262 26-237 (246)
22 3lw7_A Adenylate kinase relate 99.8 7.3E-19 2.5E-23 142.8 18.2 170 64-259 2-176 (179)
23 2pbr_A DTMP kinase, thymidylat 99.8 1E-17 3.5E-22 138.9 19.2 161 64-260 1-192 (195)
24 4eaq_A DTMP kinase, thymidylat 99.8 1.4E-17 4.8E-22 143.4 16.9 176 61-260 24-225 (229)
25 3vaa_A Shikimate kinase, SK; s 99.7 2.6E-17 8.9E-22 138.1 14.1 167 62-260 24-196 (199)
26 1nks_A Adenylate kinase; therm 99.7 1.4E-16 5E-21 131.6 15.9 170 63-257 1-193 (194)
27 4hlc_A DTMP kinase, thymidylat 99.7 1.3E-15 4.6E-20 128.9 21.5 168 63-260 2-201 (205)
28 2z0h_A DTMP kinase, thymidylat 99.7 5.1E-16 1.7E-20 129.0 18.5 166 64-260 1-192 (197)
29 4edh_A DTMP kinase, thymidylat 99.7 2.8E-15 9.7E-20 127.6 23.1 169 62-260 5-207 (213)
30 3v9p_A DTMP kinase, thymidylat 99.7 1.5E-16 5.2E-21 136.8 14.9 173 61-259 23-226 (227)
31 3t61_A Gluconokinase; PSI-biol 99.7 3E-16 1E-20 131.6 16.1 161 62-261 17-181 (202)
32 2wwf_A Thymidilate kinase, put 99.7 4.6E-17 1.6E-21 137.0 10.2 171 62-260 9-200 (212)
33 2pt5_A Shikimate kinase, SK; a 99.7 1.7E-16 5.9E-21 128.8 12.2 162 64-262 1-166 (168)
34 1ly1_A Polynucleotide kinase; 99.7 7.5E-16 2.6E-20 126.0 15.4 162 63-260 2-173 (181)
35 2v54_A DTMP kinase, thymidylat 99.7 1.1E-15 3.8E-20 127.8 16.6 163 62-260 3-191 (204)
36 4tmk_A Protein (thymidylate ki 99.7 4.8E-15 1.6E-19 126.2 20.3 171 62-260 2-207 (213)
37 1kht_A Adenylate kinase; phosp 99.7 9.7E-17 3.3E-21 132.6 9.5 170 63-257 3-191 (192)
38 3lv8_A DTMP kinase, thymidylat 99.7 1.1E-15 3.9E-20 132.1 16.5 173 62-261 26-230 (236)
39 2iyv_A Shikimate kinase, SK; t 99.7 2.3E-16 7.8E-21 130.2 11.4 162 64-260 3-169 (184)
40 1e6c_A Shikimate kinase; phosp 99.7 4.5E-16 1.5E-20 126.8 12.2 162 63-259 2-170 (173)
41 1zuh_A Shikimate kinase; alpha 99.7 2.5E-16 8.6E-21 128.2 10.2 156 63-257 7-167 (168)
42 3trf_A Shikimate kinase, SK; a 99.7 1.5E-15 5E-20 125.3 14.7 166 63-261 5-176 (185)
43 3kb2_A SPBC2 prophage-derived 99.7 3.7E-15 1.3E-19 121.0 16.7 151 64-262 2-169 (173)
44 1jjv_A Dephospho-COA kinase; P 99.7 4.9E-15 1.7E-19 124.5 17.8 164 63-259 2-196 (206)
45 1nn5_A Similar to deoxythymidy 99.6 1.5E-15 5E-20 127.9 13.3 170 61-260 7-201 (215)
46 2plr_A DTMP kinase, probable t 99.6 4.1E-15 1.4E-19 124.7 15.9 177 62-260 3-208 (213)
47 1vht_A Dephospho-COA kinase; s 99.6 2.7E-15 9.2E-20 127.3 14.9 168 62-259 3-194 (218)
48 1y63_A LMAJ004144AAA protein; 99.6 2E-15 7E-20 125.1 13.1 112 60-188 7-122 (184)
49 3hjn_A DTMP kinase, thymidylat 99.6 3E-14 1E-18 119.8 20.2 163 64-261 1-193 (197)
50 1via_A Shikimate kinase; struc 99.6 3.1E-16 1E-20 128.7 7.1 160 63-259 4-166 (175)
51 4eun_A Thermoresistant glucoki 99.6 1.1E-14 3.9E-19 122.0 16.7 166 61-261 27-195 (200)
52 1knq_A Gluconate kinase; ALFA/ 99.6 4.2E-14 1.4E-18 115.6 19.2 159 61-258 6-172 (175)
53 2vli_A Antibiotic resistance p 99.6 1.2E-14 4.2E-19 119.3 16.0 159 62-262 4-174 (183)
54 3a4m_A L-seryl-tRNA(SEC) kinas 99.6 2E-15 6.8E-20 132.1 11.7 163 62-262 3-176 (260)
55 2f6r_A COA synthase, bifunctio 99.6 4.5E-15 1.5E-19 131.4 13.9 170 60-259 72-268 (281)
56 3nwj_A ATSK2; P loop, shikimat 99.6 3.7E-15 1.3E-19 129.9 12.6 176 63-260 48-237 (250)
57 2rhm_A Putative kinase; P-loop 99.6 7.1E-16 2.4E-20 127.7 7.6 119 62-188 4-126 (193)
58 1cke_A CK, MSSA, protein (cyti 99.6 4.2E-15 1.4E-19 126.4 10.7 179 63-260 5-223 (227)
59 2if2_A Dephospho-COA kinase; a 99.6 1.4E-14 4.9E-19 121.3 13.4 170 64-266 2-198 (204)
60 3ld9_A DTMP kinase, thymidylat 99.6 2E-14 6.9E-19 123.1 13.7 169 61-260 19-216 (223)
61 3iij_A Coilin-interacting nucl 99.6 1.3E-14 4.3E-19 119.4 11.3 109 62-188 10-118 (180)
62 1ltq_A Polynucleotide kinase; 99.6 1.5E-15 5E-20 134.9 6.1 163 63-248 2-172 (301)
63 2jaq_A Deoxyguanosine kinase; 99.6 8.4E-14 2.9E-18 115.9 15.2 170 64-260 1-201 (205)
64 1uf9_A TT1252 protein; P-loop, 99.5 1E-13 3.6E-18 115.4 14.9 168 60-261 5-195 (203)
65 1kag_A SKI, shikimate kinase I 99.5 3E-14 1E-18 116.1 10.7 163 63-258 4-171 (173)
66 4i1u_A Dephospho-COA kinase; s 99.5 1.2E-13 4.1E-18 117.1 14.7 168 63-259 9-201 (210)
67 3tmk_A Thymidylate kinase; pho 99.5 3.6E-13 1.2E-17 114.8 17.3 171 62-261 4-204 (216)
68 2qor_A Guanylate kinase; phosp 99.5 1.6E-13 5.6E-18 115.3 12.6 171 61-262 10-199 (204)
69 1q3t_A Cytidylate kinase; nucl 99.5 1.2E-13 4.1E-18 118.8 11.5 174 60-259 13-234 (236)
70 3ake_A Cytidylate kinase; CMP 99.5 1.7E-12 5.7E-17 108.5 16.7 163 65-258 4-207 (208)
71 2h92_A Cytidylate kinase; ross 99.5 2.5E-14 8.6E-19 121.1 5.0 171 63-259 3-217 (219)
72 1uj2_A Uridine-cytidine kinase 99.4 5.6E-14 1.9E-18 122.1 5.4 174 61-260 20-234 (252)
73 2qt1_A Nicotinamide riboside k 99.4 1.3E-13 4.5E-18 115.8 7.2 167 61-259 19-205 (207)
74 1m7g_A Adenylylsulfate kinase; 99.4 5.1E-13 1.7E-17 112.8 8.9 163 61-262 23-205 (211)
75 3fdi_A Uncharacterized protein 99.4 1.7E-11 5.7E-16 103.2 17.2 168 63-260 6-199 (201)
76 1p5z_B DCK, deoxycytidine kina 99.4 2.4E-13 8.4E-18 118.7 6.0 84 166-260 174-259 (263)
77 3hdt_A Putative kinase; struct 99.4 3.2E-11 1.1E-15 103.2 18.0 171 63-260 14-219 (223)
78 2grj_A Dephospho-COA kinase; T 99.4 4.6E-12 1.6E-16 106.0 11.1 154 62-259 11-186 (192)
79 1qhx_A CPT, protein (chloramph 99.3 1.1E-11 3.7E-16 101.2 12.5 159 63-257 3-176 (178)
80 4e22_A Cytidylate kinase; P-lo 99.3 1.5E-11 5E-16 107.0 13.4 179 62-262 26-247 (252)
81 2yvu_A Probable adenylyl-sulfa 99.3 7.7E-12 2.6E-16 103.2 9.9 155 62-259 12-183 (186)
82 2p5t_B PEZT; postsegregational 99.3 2E-12 6.9E-17 112.4 5.6 120 60-188 29-158 (253)
83 1gvn_B Zeta; postsegregational 99.3 6.7E-11 2.3E-15 104.8 14.8 120 60-188 30-163 (287)
84 3zvl_A Bifunctional polynucleo 99.3 3.5E-11 1.2E-15 112.1 13.2 100 61-189 256-359 (416)
85 2pez_A Bifunctional 3'-phospho 99.2 3.8E-11 1.3E-15 98.4 9.3 112 61-187 3-125 (179)
86 3uie_A Adenylyl-sulfate kinase 99.2 6.5E-10 2.2E-14 92.8 17.0 152 61-261 23-196 (200)
87 3r20_A Cytidylate kinase; stru 99.2 1.3E-10 4.4E-15 100.0 12.6 177 62-261 8-229 (233)
88 1gtv_A TMK, thymidylate kinase 99.2 1.5E-12 5.2E-17 109.3 -0.9 176 64-255 1-209 (214)
89 2vp4_A Deoxynucleoside kinase; 99.2 5.4E-11 1.8E-15 101.8 8.1 78 165-260 145-225 (230)
90 1x6v_B Bifunctional 3'-phospho 99.1 3.7E-10 1.3E-14 109.8 12.7 165 61-262 50-225 (630)
91 3tr0_A Guanylate kinase, GMP k 99.1 1.9E-10 6.4E-15 95.8 8.9 168 62-261 6-188 (205)
92 2j41_A Guanylate kinase; GMP, 99.1 9.3E-11 3.2E-15 97.7 6.8 166 62-261 5-188 (207)
93 2gks_A Bifunctional SAT/APS ki 99.1 3.4E-10 1.1E-14 108.9 9.5 163 62-260 371-541 (546)
94 2axn_A 6-phosphofructo-2-kinas 99.1 6.6E-11 2.3E-15 113.2 4.0 152 62-228 34-202 (520)
95 2ocp_A DGK, deoxyguanosine kin 99.0 8.1E-10 2.8E-14 94.9 10.1 78 166-258 149-232 (241)
96 3tau_A Guanylate kinase, GMP k 99.0 7E-10 2.4E-14 93.4 7.8 167 62-261 7-190 (208)
97 1ex7_A Guanylate kinase; subst 99.0 1.4E-09 4.8E-14 90.4 8.6 161 66-259 4-184 (186)
98 1m8p_A Sulfate adenylyltransfe 98.9 3.5E-09 1.2E-13 102.3 10.0 164 61-261 394-568 (573)
99 2ze6_A Isopentenyl transferase 98.9 4.4E-09 1.5E-13 91.3 8.3 120 64-188 2-139 (253)
100 1zp6_A Hypothetical protein AT 98.8 4.3E-08 1.5E-12 80.5 11.6 168 61-261 7-177 (191)
101 2bdt_A BH3686; alpha-beta prot 98.7 1E-07 3.5E-12 78.3 12.0 116 63-189 2-124 (189)
102 3a00_A Guanylate kinase, GMP k 98.7 1.9E-08 6.6E-13 82.8 7.0 164 64-259 2-184 (186)
103 2jeo_A Uridine-cytidine kinase 98.7 6.5E-07 2.2E-11 76.9 15.3 174 61-262 23-238 (245)
104 1p6x_A Thymidine kinase; P-loo 98.7 5.7E-08 2E-12 87.7 8.7 29 61-89 5-33 (334)
105 3asz_A Uridine kinase; cytidin 98.6 1.4E-07 4.9E-12 78.7 10.2 39 61-99 4-44 (211)
106 3ch4_B Pmkase, phosphomevalona 98.6 5.9E-07 2E-11 75.3 13.0 112 62-184 10-144 (202)
107 3lnc_A Guanylate kinase, GMP k 98.6 2.9E-07 9.8E-12 78.2 10.1 166 62-261 26-210 (231)
108 1bif_A 6-phosphofructo-2-kinas 98.5 4.3E-07 1.5E-11 85.6 10.8 186 61-262 37-247 (469)
109 3cr8_A Sulfate adenylyltranfer 98.5 1.9E-07 6.5E-12 89.7 8.3 163 62-262 368-542 (552)
110 1a7j_A Phosphoribulokinase; tr 98.5 2.5E-07 8.6E-12 81.9 7.8 38 62-99 4-46 (290)
111 1rz3_A Hypothetical protein rb 98.4 3.5E-07 1.2E-11 76.2 6.3 118 61-188 20-165 (201)
112 1osn_A Thymidine kinase, VZV-T 98.4 1.2E-06 4.1E-11 79.1 10.0 29 61-89 10-39 (341)
113 1kgd_A CASK, peripheral plasma 98.4 2.2E-06 7.4E-11 70.1 10.0 29 60-88 2-30 (180)
114 3a8t_A Adenylate isopentenyltr 98.4 3.8E-07 1.3E-11 82.3 5.6 36 62-97 39-74 (339)
115 1of1_A Thymidine kinase; trans 98.3 1.4E-05 4.7E-10 73.1 15.8 28 61-88 47-74 (376)
116 1e2k_A Thymidine kinase; trans 98.3 1.2E-05 4.2E-10 72.3 14.6 28 61-88 2-29 (331)
117 3czq_A Putative polyphosphate 98.3 3.8E-06 1.3E-10 74.5 10.6 165 62-262 85-281 (304)
118 3c8u_A Fructokinase; YP_612366 98.2 2.1E-06 7.2E-11 71.8 6.8 37 61-97 20-61 (208)
119 3ney_A 55 kDa erythrocyte memb 98.2 1.2E-05 4.1E-10 67.1 11.2 30 59-88 15-44 (197)
120 1s96_A Guanylate kinase, GMP k 98.1 1.4E-05 4.8E-10 67.7 10.6 168 62-261 15-199 (219)
121 3crm_A TRNA delta(2)-isopenten 98.1 1.5E-06 5.1E-11 78.0 3.3 37 62-98 4-40 (323)
122 3tqc_A Pantothenate kinase; bi 98.1 1.6E-06 5.5E-11 77.8 3.5 38 61-98 90-134 (321)
123 1lvg_A Guanylate kinase, GMP k 98.0 9.2E-06 3.1E-10 67.5 6.8 27 62-88 3-29 (198)
124 3d3q_A TRNA delta(2)-isopenten 97.9 5.1E-06 1.8E-10 75.0 3.0 34 64-97 8-41 (340)
125 1dek_A Deoxynucleoside monopho 97.9 9.9E-06 3.4E-10 69.7 4.5 40 64-103 2-41 (241)
126 3foz_A TRNA delta(2)-isopenten 97.8 9.4E-06 3.2E-10 72.3 3.5 36 62-97 9-44 (316)
127 3czp_A Putative polyphosphate 97.8 0.00016 5.5E-09 68.4 11.9 29 61-89 41-69 (500)
128 3exa_A TRNA delta(2)-isopenten 97.8 1E-05 3.4E-10 72.3 3.3 35 63-97 3-37 (322)
129 1kjw_A Postsynaptic density pr 97.7 0.00025 8.4E-09 62.8 11.4 163 61-262 103-284 (295)
130 3czp_A Putative polyphosphate 97.7 0.00016 5.4E-09 68.5 10.6 166 61-260 298-493 (500)
131 2ga8_A Hypothetical 39.9 kDa p 97.7 8.9E-06 3.1E-10 73.8 1.4 51 62-118 23-93 (359)
132 3t15_A Ribulose bisphosphate c 97.7 2.5E-05 8.7E-10 68.8 4.3 33 62-94 35-67 (293)
133 4gp7_A Metallophosphoesterase; 97.6 0.00071 2.4E-08 54.5 11.5 107 62-188 8-122 (171)
134 1g8f_A Sulfate adenylyltransfe 97.5 4.4E-05 1.5E-09 72.6 3.6 35 62-96 394-435 (511)
135 3eph_A TRNA isopentenyltransfe 97.5 4.1E-05 1.4E-09 70.5 3.0 34 63-96 2-35 (409)
136 3ec2_A DNA replication protein 97.5 9.3E-05 3.2E-09 59.9 4.8 38 62-99 37-80 (180)
137 1lv7_A FTSH; alpha/beta domain 97.5 7.6E-05 2.6E-09 64.0 4.2 31 64-94 46-76 (257)
138 2qz4_A Paraplegin; AAA+, SPG7, 97.5 8.6E-05 2.9E-09 63.4 4.3 32 63-94 39-70 (262)
139 4b4t_M 26S protease regulatory 97.5 6.9E-05 2.4E-09 69.8 3.9 32 63-94 215-246 (434)
140 1sq5_A Pantothenate kinase; P- 97.4 8.3E-05 2.8E-09 66.0 4.1 37 61-97 78-121 (308)
141 4b4t_K 26S protease regulatory 97.4 8E-05 2.7E-09 69.2 4.0 32 63-94 206-237 (428)
142 4b4t_L 26S protease subunit RP 97.4 8.4E-05 2.9E-09 69.3 3.9 32 63-94 215-246 (437)
143 3eie_A Vacuolar protein sortin 97.4 0.00011 3.8E-09 65.4 4.6 33 62-94 50-82 (322)
144 4b4t_J 26S protease regulatory 97.4 7.9E-05 2.7E-09 68.7 3.5 32 63-94 182-213 (405)
145 3hws_A ATP-dependent CLP prote 97.4 0.00011 3.9E-09 66.3 4.5 33 62-94 50-82 (363)
146 1g41_A Heat shock protein HSLU 97.4 9.3E-05 3.2E-09 69.1 3.7 33 63-95 50-82 (444)
147 3cf0_A Transitional endoplasmi 97.4 0.00011 3.6E-09 64.9 3.9 39 62-100 48-88 (301)
148 3b9p_A CG5977-PA, isoform A; A 97.4 0.00011 3.8E-09 64.2 3.9 32 62-93 53-84 (297)
149 1odf_A YGR205W, hypothetical 3 97.4 0.0001 3.5E-09 65.0 3.6 39 61-99 29-75 (290)
150 2x8a_A Nuclear valosin-contain 97.3 0.00012 4.2E-09 63.8 4.1 29 66-94 47-75 (274)
151 3h4m_A Proteasome-activating n 97.3 0.00012 4.2E-09 63.4 4.0 32 63-94 51-82 (285)
152 1d2n_A N-ethylmaleimide-sensit 97.3 0.00016 5.6E-09 62.5 4.7 33 62-94 63-95 (272)
153 2qmh_A HPR kinase/phosphorylas 97.3 0.00011 3.8E-09 61.3 3.4 34 62-96 33-66 (205)
154 1xwi_A SKD1 protein; VPS4B, AA 97.3 0.00017 5.7E-09 64.4 4.3 30 63-92 45-75 (322)
155 4b4t_H 26S protease regulatory 97.3 0.00012 4.2E-09 68.4 3.5 32 63-94 243-274 (467)
156 4b4t_I 26S protease regulatory 97.3 0.00016 5.4E-09 67.1 4.0 32 63-94 216-247 (437)
157 3rhf_A Putative polyphosphate 97.3 0.0039 1.3E-07 54.6 12.5 170 61-266 73-274 (289)
158 1ofh_A ATP-dependent HSL prote 97.2 0.00017 6E-09 62.9 3.9 31 63-93 50-80 (310)
159 2xkx_A Disks large homolog 4; 97.2 0.0031 1.1E-07 62.4 13.2 165 60-262 528-710 (721)
160 3syl_A Protein CBBX; photosynt 97.2 0.0002 6.7E-09 62.8 4.1 26 62-87 66-91 (309)
161 1ye8_A Protein THEP1, hypothet 97.2 0.00018 6E-09 58.8 3.3 27 64-90 1-27 (178)
162 1um8_A ATP-dependent CLP prote 97.2 0.0002 6.7E-09 65.0 4.0 32 63-94 72-103 (376)
163 1jbk_A CLPB protein; beta barr 97.2 0.00024 8.3E-09 56.7 4.0 26 62-87 42-67 (195)
164 2qp9_X Vacuolar protein sortin 97.2 0.0002 6.8E-09 64.8 3.7 32 63-94 84-115 (355)
165 1ixz_A ATP-dependent metallopr 97.1 0.00024 8.3E-09 60.6 3.7 29 66-94 52-80 (254)
166 2p65_A Hypothetical protein PF 97.1 0.00021 7.3E-09 57.1 3.1 25 63-87 43-67 (187)
167 2r62_A Cell division protease 97.1 0.00012 4.2E-09 62.9 1.7 29 66-94 47-75 (268)
168 3tvt_A Disks large 1 tumor sup 97.1 0.0012 4.1E-08 58.2 8.0 164 61-263 98-280 (292)
169 1in4_A RUVB, holliday junction 97.1 0.00036 1.2E-08 62.4 4.2 29 63-91 51-79 (334)
170 3d8b_A Fidgetin-like protein 1 97.1 0.00029 9.8E-09 63.7 3.6 32 62-93 116-147 (357)
171 2w58_A DNAI, primosome compone 97.1 0.00044 1.5E-08 56.8 4.4 36 64-99 55-95 (202)
172 2kjq_A DNAA-related protein; s 97.1 0.00028 9.5E-09 55.9 3.0 26 62-87 35-60 (149)
173 3pfi_A Holliday junction ATP-d 97.0 0.00041 1.4E-08 61.6 4.1 32 63-94 55-86 (338)
174 2c9o_A RUVB-like 1; hexameric 97.0 0.00038 1.3E-08 65.0 4.0 32 63-94 63-96 (456)
175 1iy2_A ATP-dependent metallopr 97.0 0.0004 1.4E-08 60.3 3.7 29 66-94 76-104 (278)
176 3bos_A Putative DNA replicatio 97.0 0.00044 1.5E-08 57.7 3.8 36 62-97 51-91 (242)
177 3dm5_A SRP54, signal recogniti 97.0 0.0036 1.2E-07 58.3 10.2 26 62-87 99-124 (443)
178 1svm_A Large T antigen; AAA+ f 96.9 0.00059 2E-08 62.4 4.3 32 62-93 168-199 (377)
179 3vfd_A Spastin; ATPase, microt 96.9 0.00053 1.8E-08 62.6 4.0 32 63-94 148-179 (389)
180 3n70_A Transport activator; si 96.9 0.00051 1.7E-08 53.7 3.4 25 63-87 24-48 (145)
181 2ce7_A Cell division protein F 96.9 0.00054 1.9E-08 64.5 4.1 30 65-94 51-80 (476)
182 1z6g_A Guanylate kinase; struc 96.9 0.00046 1.6E-08 57.9 3.3 26 62-87 22-47 (218)
183 2zan_A Vacuolar protein sortin 96.9 0.00048 1.6E-08 64.2 3.5 37 63-99 167-206 (444)
184 1znw_A Guanylate kinase, GMP k 96.9 0.0006 2.1E-08 56.5 3.7 28 61-88 18-45 (207)
185 1sxj_A Activator 1 95 kDa subu 96.9 0.00062 2.1E-08 64.6 4.0 32 63-94 77-108 (516)
186 1tue_A Replication protein E1; 96.8 0.00059 2E-08 57.2 3.3 31 63-93 58-88 (212)
187 3cf2_A TER ATPase, transitiona 96.8 0.00051 1.7E-08 68.6 3.3 32 63-94 238-269 (806)
188 3aez_A Pantothenate kinase; tr 96.8 0.00075 2.6E-08 60.1 4.1 27 61-87 88-114 (312)
189 1xjc_A MOBB protein homolog; s 96.8 0.00085 2.9E-08 54.4 3.6 26 62-87 3-28 (169)
190 1c9k_A COBU, adenosylcobinamid 96.8 0.00056 1.9E-08 56.1 2.6 28 66-94 2-31 (180)
191 1l8q_A Chromosomal replication 96.8 0.00088 3E-08 59.3 4.0 37 62-98 36-77 (324)
192 4fcw_A Chaperone protein CLPB; 96.8 0.00097 3.3E-08 58.3 4.2 24 64-87 48-71 (311)
193 2dhr_A FTSH; AAA+ protein, hex 96.8 0.0011 3.7E-08 62.9 4.7 29 66-94 67-95 (499)
194 1njg_A DNA polymerase III subu 96.7 0.00099 3.4E-08 55.0 3.7 26 64-89 46-71 (250)
195 1hqc_A RUVB; extended AAA-ATPa 96.7 0.00094 3.2E-08 58.7 3.7 30 63-92 38-67 (324)
196 2chg_A Replication factor C sm 96.7 0.00091 3.1E-08 54.6 3.4 23 65-87 40-62 (226)
197 3uk6_A RUVB-like 2; hexameric 96.7 0.00097 3.3E-08 59.8 3.6 27 63-89 70-96 (368)
198 3pvs_A Replication-associated 96.7 0.0011 3.7E-08 61.9 4.1 31 64-94 51-81 (447)
199 3m6a_A ATP-dependent protease 96.7 0.001 3.5E-08 63.7 3.9 32 62-93 107-138 (543)
200 3co5_A Putative two-component 96.7 0.00035 1.2E-08 54.6 0.6 25 64-88 28-52 (143)
201 3kfv_A Tight junction protein 96.6 0.008 2.7E-07 53.3 9.2 146 62-261 144-291 (308)
202 3te6_A Regulatory protein SIR3 96.6 0.00063 2.2E-08 60.8 2.1 27 61-87 43-69 (318)
203 2r44_A Uncharacterized protein 96.6 0.00075 2.6E-08 59.9 2.5 29 64-92 47-75 (331)
204 2orw_A Thymidine kinase; TMTK, 96.6 0.0012 4.1E-08 54.0 3.6 25 63-87 3-27 (184)
205 2wjg_A FEOB, ferrous iron tran 96.6 0.0015 5E-08 52.4 4.0 27 60-86 4-30 (188)
206 3clv_A RAB5 protein, putative; 96.6 0.0019 6.3E-08 52.0 4.5 27 60-86 4-30 (208)
207 2ehv_A Hypothetical protein PH 96.6 0.0012 4E-08 55.7 3.4 23 62-84 29-51 (251)
208 4a74_A DNA repair and recombin 96.6 0.0012 4.3E-08 54.8 3.5 26 62-87 24-49 (231)
209 2qby_B CDC6 homolog 3, cell di 96.6 0.0013 4.5E-08 59.1 3.8 26 62-87 44-69 (384)
210 3pxg_A Negative regulator of g 96.6 0.0017 5.8E-08 60.9 4.6 25 63-87 201-225 (468)
211 2v1u_A Cell division control p 96.6 0.00089 3E-08 59.9 2.6 26 62-87 43-68 (387)
212 2w0m_A SSO2452; RECA, SSPF, un 96.6 0.0015 5.1E-08 54.2 3.8 26 62-87 22-47 (235)
213 3hu3_A Transitional endoplasmi 96.6 0.0013 4.4E-08 62.2 3.8 32 63-94 238-269 (489)
214 2cvh_A DNA repair and recombin 96.5 0.0015 5E-08 54.0 3.5 33 62-94 19-53 (220)
215 1np6_A Molybdopterin-guanine d 96.5 0.0017 5.9E-08 52.8 3.8 26 62-87 5-30 (174)
216 2i3b_A HCR-ntpase, human cance 96.5 0.0014 4.8E-08 54.0 3.3 24 64-87 2-25 (189)
217 1htw_A HI0065; nucleotide-bind 96.5 0.002 6.8E-08 51.5 4.1 26 62-87 32-57 (158)
218 2v9p_A Replication protein E1; 96.5 0.0017 5.7E-08 57.7 3.8 27 62-88 125-151 (305)
219 1vma_A Cell division protein F 96.5 0.0018 6.3E-08 57.4 4.0 27 61-87 102-128 (306)
220 2qby_A CDC6 homolog 1, cell di 96.5 0.0016 5.3E-08 58.2 3.6 26 62-87 44-69 (386)
221 1rj9_A FTSY, signal recognitio 96.5 0.0021 7.2E-08 56.9 4.4 26 62-87 101-126 (304)
222 3tkl_A RAS-related protein RAB 96.5 0.0018 6.2E-08 52.1 3.6 26 61-86 14-39 (196)
223 3e70_C DPA, signal recognition 96.4 0.0021 7.2E-08 57.6 4.2 27 61-87 127-153 (328)
224 2r2a_A Uncharacterized protein 96.4 0.0018 6.3E-08 53.8 3.5 25 62-86 4-28 (199)
225 2qgz_A Helicase loader, putati 96.4 0.0019 6.6E-08 57.1 3.8 38 63-100 152-195 (308)
226 3cf2_A TER ATPase, transitiona 96.4 0.0015 5.3E-08 65.1 3.3 37 63-99 511-549 (806)
227 3u61_B DNA polymerase accessor 96.4 0.0017 5.7E-08 57.3 3.2 32 63-94 48-79 (324)
228 1upt_A ARL1, ADP-ribosylation 96.4 0.0027 9.3E-08 49.7 4.2 25 61-85 5-29 (171)
229 2bjv_A PSP operon transcriptio 96.4 0.0015 5E-08 56.1 2.7 25 64-88 30-54 (265)
230 1ypw_A Transitional endoplasmi 96.4 0.0015 5.1E-08 65.4 3.2 33 62-94 237-269 (806)
231 2eyu_A Twitching motility prot 96.4 0.0025 8.6E-08 55.1 4.2 27 61-87 23-49 (261)
232 1z2a_A RAS-related protein RAB 96.4 0.0022 7.5E-08 50.0 3.5 26 61-86 3-28 (168)
233 1oix_A RAS-related protein RAB 96.3 0.0022 7.4E-08 52.1 3.4 25 62-86 28-52 (191)
234 1m7b_A RND3/RHOE small GTP-bin 96.3 0.0021 7.3E-08 51.5 3.3 27 60-86 4-30 (184)
235 1n0w_A DNA repair protein RAD5 96.3 0.0021 7.2E-08 53.9 3.3 25 62-86 23-47 (243)
236 2fn4_A P23, RAS-related protei 96.3 0.0026 9E-08 50.2 3.7 26 61-86 7-32 (181)
237 1fnn_A CDC6P, cell division co 96.3 0.0024 8.2E-08 57.3 3.9 24 64-87 45-68 (389)
238 3b9q_A Chloroplast SRP recepto 96.3 0.0028 9.6E-08 56.1 4.1 27 61-87 98-124 (302)
239 1sxj_C Activator 1 40 kDa subu 96.3 0.0023 7.8E-08 57.1 3.6 24 65-88 48-71 (340)
240 2b8t_A Thymidine kinase; deoxy 96.3 0.0029 9.9E-08 53.6 4.0 27 61-87 10-36 (223)
241 1g8p_A Magnesium-chelatase 38 96.3 0.0016 5.5E-08 57.8 2.4 24 65-88 47-70 (350)
242 1sxj_D Activator 1 41 kDa subu 96.3 0.0023 7.7E-08 56.8 3.4 24 65-88 60-83 (353)
243 2dyk_A GTP-binding protein; GT 96.2 0.003 1E-07 49.0 3.6 23 64-86 2-24 (161)
244 3pxi_A Negative regulator of g 96.2 0.0032 1.1E-07 62.5 4.6 33 63-95 201-243 (758)
245 2f1r_A Molybdopterin-guanine d 96.2 0.0012 4.2E-08 53.5 1.3 25 64-88 3-27 (171)
246 2dr3_A UPF0273 protein PH0284; 96.2 0.0027 9.3E-08 53.2 3.6 33 62-94 22-59 (247)
247 1cr0_A DNA primase/helicase; R 96.2 0.0028 9.6E-08 55.3 3.7 26 62-87 34-59 (296)
248 1sxj_E Activator 1 40 kDa subu 96.2 0.0023 7.9E-08 57.0 3.2 23 65-87 38-60 (354)
249 1zd9_A ADP-ribosylation factor 96.2 0.0029 9.9E-08 51.0 3.4 25 62-86 21-45 (188)
250 2z4s_A Chromosomal replication 96.2 0.0034 1.2E-07 58.4 4.2 36 63-98 130-172 (440)
251 1iqp_A RFCS; clamp loader, ext 96.2 0.0032 1.1E-07 55.0 3.9 24 65-88 48-71 (327)
252 2px0_A Flagellar biosynthesis 96.2 0.0031 1E-07 55.6 3.7 26 62-87 104-129 (296)
253 1kao_A RAP2A; GTP-binding prot 96.2 0.0031 1.1E-07 48.9 3.4 24 63-86 3-26 (167)
254 2hxs_A RAB-26, RAS-related pro 96.2 0.0038 1.3E-07 49.3 3.9 26 61-86 4-29 (178)
255 2ce2_X GTPase HRAS; signaling 96.1 0.0032 1.1E-07 48.7 3.3 24 63-86 3-26 (166)
256 2wsm_A Hydrogenase expression/ 96.1 0.0038 1.3E-07 51.6 3.9 26 62-87 29-54 (221)
257 1r6b_X CLPA protein; AAA+, N-t 96.1 0.0032 1.1E-07 62.3 4.0 32 61-92 485-517 (758)
258 2oil_A CATX-8, RAS-related pro 96.1 0.0036 1.2E-07 50.4 3.6 27 60-86 22-48 (193)
259 2f9l_A RAB11B, member RAS onco 96.1 0.0035 1.2E-07 51.1 3.5 25 62-86 4-28 (199)
260 3tif_A Uncharacterized ABC tra 96.1 0.0028 9.7E-08 53.9 3.0 26 62-87 30-55 (235)
261 3kl4_A SRP54, signal recogniti 96.1 0.0038 1.3E-07 58.0 4.1 26 62-87 96-121 (433)
262 2wji_A Ferrous iron transport 96.1 0.0034 1.2E-07 49.5 3.3 23 63-85 3-25 (165)
263 1lw7_A Transcriptional regulat 96.1 0.003 1E-07 57.1 3.3 28 63-90 170-197 (365)
264 1ypw_A Transitional endoplasmi 96.1 0.0017 5.8E-08 65.0 1.7 32 62-93 510-541 (806)
265 3oes_A GTPase rhebl1; small GT 96.1 0.0034 1.2E-07 51.1 3.3 30 57-86 18-47 (201)
266 1ky3_A GTP-binding protein YPT 96.1 0.0038 1.3E-07 49.3 3.4 26 61-86 6-31 (182)
267 3tqf_A HPR(Ser) kinase; transf 96.1 0.0038 1.3E-07 50.8 3.4 33 62-95 15-47 (181)
268 1wms_A RAB-9, RAB9, RAS-relate 96.1 0.0034 1.2E-07 49.5 3.1 26 61-86 5-30 (177)
269 3tw8_B RAS-related protein RAB 96.0 0.0034 1.2E-07 49.6 3.1 25 61-85 7-31 (181)
270 3ihw_A Centg3; RAS, centaurin, 96.0 0.0047 1.6E-07 49.8 3.9 27 60-86 17-43 (184)
271 1jr3_A DNA polymerase III subu 96.0 0.004 1.4E-07 55.6 3.8 27 63-89 38-64 (373)
272 2gj8_A MNME, tRNA modification 96.0 0.0037 1.3E-07 49.8 3.3 25 62-86 3-27 (172)
273 2og2_A Putative signal recogni 96.0 0.0044 1.5E-07 56.2 4.1 27 61-87 155-181 (359)
274 3bc1_A RAS-related protein RAB 96.0 0.0043 1.5E-07 49.5 3.6 25 61-85 9-33 (195)
275 2qm8_A GTPase/ATPase; G protei 96.0 0.0046 1.6E-07 55.5 4.1 27 61-87 53-79 (337)
276 2chq_A Replication factor C sm 96.0 0.0036 1.2E-07 54.5 3.4 23 65-87 40-62 (319)
277 1u8z_A RAS-related protein RAL 96.0 0.0042 1.4E-07 48.2 3.5 24 63-86 4-27 (168)
278 2hf9_A Probable hydrogenase ni 96.0 0.0047 1.6E-07 51.2 3.9 26 62-87 37-62 (226)
279 3t5g_A GTP-binding protein RHE 96.0 0.0033 1.1E-07 50.0 2.8 25 61-85 4-28 (181)
280 1xx6_A Thymidine kinase; NESG, 96.0 0.0052 1.8E-07 50.7 4.1 27 61-87 6-32 (191)
281 1nrj_B SR-beta, signal recogni 96.0 0.0045 1.5E-07 50.9 3.7 27 61-87 10-36 (218)
282 2lkc_A Translation initiation 96.0 0.0045 1.5E-07 48.8 3.6 25 61-85 6-30 (178)
283 1fzq_A ADP-ribosylation factor 96.0 0.0043 1.5E-07 49.7 3.5 27 60-86 13-39 (181)
284 2nzj_A GTP-binding protein REM 96.0 0.0043 1.5E-07 48.7 3.4 24 62-85 3-26 (175)
285 1c1y_A RAS-related protein RAP 96.0 0.0045 1.5E-07 48.2 3.5 23 63-85 3-25 (167)
286 2ged_A SR-beta, signal recogni 96.0 0.0047 1.6E-07 49.6 3.7 26 61-86 46-71 (193)
287 1z08_A RAS-related protein RAB 96.0 0.0042 1.4E-07 48.6 3.3 26 61-86 4-29 (170)
288 2pcj_A ABC transporter, lipopr 96.0 0.0032 1.1E-07 53.1 2.7 26 62-87 29-54 (224)
289 3pqc_A Probable GTP-binding pr 96.0 0.0056 1.9E-07 49.0 4.1 26 61-86 21-46 (195)
290 2erx_A GTP-binding protein DI- 96.0 0.004 1.4E-07 48.6 3.1 24 62-85 2-25 (172)
291 1g16_A RAS-related protein SEC 96.0 0.0042 1.5E-07 48.5 3.3 24 62-85 2-25 (170)
292 2cbz_A Multidrug resistance-as 96.0 0.0036 1.2E-07 53.3 3.0 26 62-87 30-55 (237)
293 1moz_A ARL1, ADP-ribosylation 96.0 0.0032 1.1E-07 50.0 2.6 24 61-84 16-39 (183)
294 1u0j_A DNA replication protein 95.9 0.0055 1.9E-07 53.2 4.2 27 63-89 104-130 (267)
295 3bwd_D RAC-like GTP-binding pr 95.9 0.0048 1.7E-07 48.9 3.6 26 61-86 6-31 (182)
296 2p5s_A RAS and EF-hand domain 95.9 0.0049 1.7E-07 50.1 3.6 27 60-86 25-51 (199)
297 2y8e_A RAB-protein 6, GH09086P 95.9 0.0041 1.4E-07 49.0 3.1 24 62-85 13-36 (179)
298 1nlf_A Regulatory protein REPA 95.9 0.004 1.4E-07 53.9 3.2 26 62-87 29-54 (279)
299 4dsu_A GTPase KRAS, isoform 2B 95.9 0.0043 1.5E-07 49.4 3.2 25 62-86 3-27 (189)
300 3p32_A Probable GTPase RV1496/ 95.9 0.0053 1.8E-07 55.3 4.1 26 62-87 78-103 (355)
301 1ek0_A Protein (GTP-binding pr 95.9 0.0043 1.5E-07 48.3 3.1 24 63-86 3-26 (170)
302 2atv_A RERG, RAS-like estrogen 95.9 0.0052 1.8E-07 49.7 3.7 26 61-86 26-51 (196)
303 1sxj_B Activator 1 37 kDa subu 95.9 0.0045 1.5E-07 54.0 3.5 23 65-87 44-66 (323)
304 1svi_A GTP-binding protein YSX 95.9 0.005 1.7E-07 49.5 3.5 26 61-86 21-46 (195)
305 2xtp_A GTPase IMAP family memb 95.9 0.0046 1.6E-07 52.7 3.4 27 61-87 20-46 (260)
306 2www_A Methylmalonic aciduria 95.9 0.0056 1.9E-07 55.1 4.1 26 62-87 73-98 (349)
307 2yhs_A FTSY, cell division pro 95.9 0.0053 1.8E-07 57.9 4.1 27 61-87 291-317 (503)
308 3b85_A Phosphate starvation-in 95.9 0.0044 1.5E-07 51.8 3.2 25 62-86 21-45 (208)
309 2qen_A Walker-type ATPase; unk 95.9 0.0047 1.6E-07 54.3 3.5 33 64-96 32-64 (350)
310 2bov_A RAla, RAS-related prote 95.9 0.0057 2E-07 49.5 3.8 26 61-86 12-37 (206)
311 1z0f_A RAB14, member RAS oncog 95.9 0.0054 1.8E-07 48.3 3.5 26 61-86 13-38 (179)
312 1mv5_A LMRA, multidrug resista 95.9 0.0045 1.5E-07 52.8 3.2 26 62-87 27-52 (243)
313 1z0j_A RAB-22, RAS-related pro 95.9 0.0047 1.6E-07 48.2 3.1 25 62-86 5-29 (170)
314 2iwr_A Centaurin gamma 1; ANK 95.8 0.0051 1.7E-07 48.7 3.3 25 62-86 6-30 (178)
315 1b0u_A Histidine permease; ABC 95.8 0.0043 1.5E-07 53.7 3.0 26 62-87 31-56 (262)
316 3kkq_A RAS-related protein M-R 95.8 0.0064 2.2E-07 48.3 3.9 26 61-86 16-41 (183)
317 2ewv_A Twitching motility prot 95.8 0.006 2E-07 55.5 4.0 26 62-87 135-160 (372)
318 3gfo_A Cobalt import ATP-bindi 95.8 0.0041 1.4E-07 54.3 2.8 26 62-87 33-58 (275)
319 2h17_A ADP-ribosylation factor 95.8 0.0042 1.4E-07 49.6 2.7 27 60-86 18-44 (181)
320 2gf9_A RAS-related protein RAB 95.8 0.0068 2.3E-07 48.6 4.0 26 61-86 20-45 (189)
321 2efe_B Small GTP-binding prote 95.8 0.0053 1.8E-07 48.6 3.3 26 61-86 10-35 (181)
322 1r2q_A RAS-related protein RAB 95.8 0.0042 1.4E-07 48.4 2.7 24 62-85 5-28 (170)
323 4g1u_C Hemin import ATP-bindin 95.8 0.0043 1.5E-07 53.8 2.9 26 62-87 36-61 (266)
324 2zej_A Dardarin, leucine-rich 95.8 0.0042 1.4E-07 49.9 2.7 22 64-85 3-24 (184)
325 3q85_A GTP-binding protein REM 95.8 0.0056 1.9E-07 47.8 3.4 22 64-85 3-24 (169)
326 3shw_A Tight junction protein 95.8 0.009 3.1E-07 56.0 5.2 152 60-261 221-374 (468)
327 2vhj_A Ntpase P4, P4; non- hyd 95.8 0.0054 1.9E-07 54.8 3.5 33 62-94 122-156 (331)
328 3pxi_A Negative regulator of g 95.8 0.0062 2.1E-07 60.4 4.4 39 60-98 517-561 (758)
329 2qu8_A Putative nucleolar GTP- 95.8 0.0067 2.3E-07 50.6 4.0 25 61-85 27-51 (228)
330 3q72_A GTP-binding protein RAD 95.8 0.0052 1.8E-07 47.9 3.1 22 63-84 2-23 (166)
331 2olj_A Amino acid ABC transpor 95.8 0.0047 1.6E-07 53.5 3.0 26 62-87 49-74 (263)
332 1pui_A ENGB, probable GTP-bind 95.8 0.0031 1.1E-07 51.6 1.8 25 61-85 24-48 (210)
333 2ff7_A Alpha-hemolysin translo 95.8 0.0045 1.6E-07 53.0 2.9 26 62-87 34-59 (247)
334 2d2e_A SUFC protein; ABC-ATPas 95.8 0.0055 1.9E-07 52.5 3.4 25 62-86 28-52 (250)
335 2ixe_A Antigen peptide transpo 95.8 0.0048 1.6E-07 53.6 3.0 26 62-87 44-69 (271)
336 3t1o_A Gliding protein MGLA; G 95.8 0.0049 1.7E-07 49.4 2.9 28 61-88 12-39 (198)
337 1z06_A RAS-related protein RAB 95.8 0.006 2E-07 49.0 3.4 25 61-85 18-42 (189)
338 2g6b_A RAS-related protein RAB 95.8 0.0066 2.2E-07 48.0 3.6 26 61-86 8-33 (180)
339 1zu4_A FTSY; GTPase, signal re 95.8 0.0069 2.4E-07 54.0 4.1 27 61-87 103-129 (320)
340 3nbx_X ATPase RAVA; AAA+ ATPas 95.8 0.0037 1.3E-07 59.2 2.5 25 64-88 42-66 (500)
341 2ghi_A Transport protein; mult 95.8 0.0049 1.7E-07 53.2 3.0 26 62-87 45-70 (260)
342 4bas_A ADP-ribosylation factor 95.8 0.0054 1.8E-07 49.4 3.2 26 60-85 14-39 (199)
343 2a5j_A RAS-related protein RAB 95.8 0.0079 2.7E-07 48.4 4.1 26 61-86 19-44 (191)
344 2zu0_C Probable ATP-dependent 95.7 0.0059 2E-07 52.9 3.5 25 62-86 45-69 (267)
345 3c5c_A RAS-like protein 12; GD 95.7 0.0062 2.1E-07 49.1 3.4 26 61-86 19-44 (187)
346 1g6h_A High-affinity branched- 95.7 0.0049 1.7E-07 53.1 2.9 26 62-87 32-57 (257)
347 2a9k_A RAS-related protein RAL 95.7 0.0064 2.2E-07 48.2 3.5 25 62-86 17-41 (187)
348 1ji0_A ABC transporter; ATP bi 95.7 0.0049 1.7E-07 52.5 2.9 26 62-87 31-56 (240)
349 2onk_A Molybdate/tungstate ABC 95.7 0.0055 1.9E-07 52.3 3.2 24 64-87 25-48 (240)
350 2pze_A Cystic fibrosis transme 95.7 0.0049 1.7E-07 52.1 2.9 26 62-87 33-58 (229)
351 3con_A GTPase NRAS; structural 95.7 0.0059 2E-07 48.9 3.2 25 62-86 20-44 (190)
352 1vg8_A RAS-related protein RAB 95.7 0.0064 2.2E-07 49.4 3.4 26 61-86 6-31 (207)
353 1yrb_A ATP(GTP)binding protein 95.7 0.0083 2.8E-07 50.9 4.2 27 61-87 12-38 (262)
354 1pzn_A RAD51, DNA repair and r 95.7 0.0068 2.3E-07 54.6 3.8 26 62-87 130-155 (349)
355 1vpl_A ABC transporter, ATP-bi 95.7 0.0054 1.8E-07 52.9 3.0 26 62-87 40-65 (256)
356 3hr8_A Protein RECA; alpha and 95.7 0.0067 2.3E-07 54.9 3.8 34 62-95 60-98 (356)
357 1sgw_A Putative ABC transporte 95.7 0.0045 1.5E-07 52.0 2.4 26 62-87 34-59 (214)
358 2gf0_A GTP-binding protein DI- 95.7 0.0078 2.7E-07 48.4 3.8 24 62-85 7-30 (199)
359 2fg5_A RAB-22B, RAS-related pr 95.7 0.0057 2E-07 49.4 3.0 26 61-86 21-46 (192)
360 3lxx_A GTPase IMAP family memb 95.7 0.0061 2.1E-07 51.3 3.3 26 61-86 27-52 (239)
361 2bme_A RAB4A, RAS-related prot 95.7 0.0058 2E-07 48.6 3.0 26 61-86 8-33 (186)
362 2v3c_C SRP54, signal recogniti 95.7 0.006 2.1E-07 56.6 3.4 26 62-87 98-123 (432)
363 1m2o_B GTP-binding protein SAR 95.6 0.0065 2.2E-07 49.1 3.2 25 62-86 22-46 (190)
364 2qi9_C Vitamin B12 import ATP- 95.6 0.0057 2E-07 52.5 2.9 26 62-87 25-50 (249)
365 2gza_A Type IV secretion syste 95.6 0.005 1.7E-07 55.7 2.6 27 62-88 174-200 (361)
366 2ihy_A ABC transporter, ATP-bi 95.6 0.0057 2E-07 53.4 2.9 26 62-87 46-71 (279)
367 2yz2_A Putative ABC transporte 95.6 0.0062 2.1E-07 52.7 3.0 26 62-87 32-57 (266)
368 1r8s_A ADP-ribosylation factor 95.6 0.0083 2.8E-07 46.6 3.5 23 64-86 1-23 (164)
369 3cph_A RAS-related protein SEC 95.6 0.0082 2.8E-07 48.9 3.6 25 61-85 18-42 (213)
370 3jvv_A Twitching mobility prot 95.6 0.0093 3.2E-07 53.9 4.2 25 63-87 123-147 (356)
371 2p67_A LAO/AO transport system 95.5 0.0085 2.9E-07 53.7 3.9 27 61-87 54-80 (341)
372 2zts_A Putative uncharacterize 95.5 0.0085 2.9E-07 50.2 3.7 24 62-85 29-52 (251)
373 1ksh_A ARF-like protein 2; sma 95.5 0.0081 2.8E-07 47.9 3.4 26 61-86 16-41 (186)
374 1mh1_A RAC1; GTP-binding, GTPa 95.5 0.0086 2.9E-07 47.5 3.5 24 62-85 4-27 (186)
375 2q3h_A RAS homolog gene family 95.5 0.0082 2.8E-07 48.6 3.5 26 60-85 17-42 (201)
376 1zbd_A Rabphilin-3A; G protein 95.5 0.0086 2.9E-07 48.6 3.6 26 61-86 6-31 (203)
377 3sop_A Neuronal-specific septi 95.5 0.0079 2.7E-07 52.2 3.5 24 64-87 3-26 (270)
378 1a5t_A Delta prime, HOLB; zinc 95.5 0.0094 3.2E-07 53.1 4.1 29 63-91 24-52 (334)
379 2b6h_A ADP-ribosylation factor 95.5 0.0088 3E-07 48.4 3.5 25 61-85 27-51 (192)
380 2nq2_C Hypothetical ABC transp 95.5 0.0066 2.2E-07 52.2 2.8 26 62-87 30-55 (253)
381 2ew1_A RAS-related protein RAB 95.5 0.0082 2.8E-07 49.3 3.3 26 61-86 24-49 (201)
382 3reg_A RHO-like small GTPase; 95.5 0.0082 2.8E-07 48.4 3.2 26 61-86 21-46 (194)
383 1zj6_A ADP-ribosylation factor 95.5 0.0094 3.2E-07 47.7 3.6 25 61-85 14-38 (187)
384 2cxx_A Probable GTP-binding pr 95.5 0.0074 2.5E-07 48.1 2.9 23 64-86 2-24 (190)
385 3cbq_A GTP-binding protein REM 95.5 0.0066 2.2E-07 49.5 2.6 25 61-85 21-45 (195)
386 1ojl_A Transcriptional regulat 95.5 0.0066 2.3E-07 53.5 2.8 25 63-87 25-49 (304)
387 1qvr_A CLPB protein; coiled co 95.4 0.0061 2.1E-07 61.3 2.8 25 63-87 191-215 (854)
388 1x3s_A RAS-related protein RAB 95.4 0.0071 2.4E-07 48.4 2.8 25 62-86 14-38 (195)
389 2fh5_B SR-beta, signal recogni 95.4 0.0089 3E-07 49.0 3.4 26 61-86 5-30 (214)
390 3llu_A RAS-related GTP-binding 95.4 0.0062 2.1E-07 49.4 2.4 27 60-86 17-43 (196)
391 3fvq_A Fe(3+) IONS import ATP- 95.4 0.0083 2.8E-07 54.4 3.4 26 62-87 29-54 (359)
392 2j0v_A RAC-like GTP-binding pr 95.4 0.011 3.7E-07 48.4 3.8 26 61-86 7-32 (212)
393 1gwn_A RHO-related GTP-binding 95.4 0.0088 3E-07 49.2 3.3 26 61-86 26-51 (205)
394 2j37_W Signal recognition part 95.4 0.0096 3.3E-07 56.4 3.9 27 61-87 99-125 (504)
395 3dz8_A RAS-related protein RAB 95.4 0.01 3.5E-07 47.8 3.5 27 61-87 21-47 (191)
396 2zr9_A Protein RECA, recombina 95.4 0.0094 3.2E-07 53.7 3.5 34 62-95 60-98 (349)
397 1qvr_A CLPB protein; coiled co 95.4 0.0075 2.6E-07 60.7 3.2 27 61-87 585-612 (854)
398 2yyz_A Sugar ABC transporter, 95.4 0.0096 3.3E-07 53.9 3.6 26 62-87 28-53 (359)
399 2j1l_A RHO-related GTP-binding 95.3 0.0093 3.2E-07 49.2 3.2 25 61-85 32-56 (214)
400 3tsz_A Tight junction protein 95.3 0.025 8.5E-07 51.8 6.3 151 60-260 229-381 (391)
401 3rlf_A Maltose/maltodextrin im 95.3 0.0098 3.3E-07 54.3 3.5 26 62-87 28-53 (381)
402 1f6b_A SAR1; gtpases, N-termin 95.3 0.0084 2.9E-07 48.9 2.8 24 62-85 24-47 (198)
403 2bcg_Y Protein YP2, GTP-bindin 95.3 0.011 3.6E-07 48.2 3.4 26 61-86 6-31 (206)
404 1zcb_A G alpha I/13; GTP-bindi 95.3 0.01 3.4E-07 53.8 3.6 28 61-88 31-58 (362)
405 1p9r_A General secretion pathw 95.3 0.013 4.4E-07 54.2 4.3 27 62-88 166-192 (418)
406 2it1_A 362AA long hypothetical 95.3 0.01 3.5E-07 53.8 3.5 26 62-87 28-53 (362)
407 1j8m_F SRP54, signal recogniti 95.3 0.012 4E-07 51.9 3.8 25 63-87 98-122 (297)
408 1v5w_A DMC1, meiotic recombina 95.3 0.012 4E-07 52.8 3.8 26 61-86 120-145 (343)
409 2il1_A RAB12; G-protein, GDP, 95.3 0.01 3.5E-07 47.9 3.2 24 62-85 25-48 (192)
410 2f7s_A C25KG, RAS-related prot 95.3 0.011 3.6E-07 48.6 3.3 25 61-85 23-47 (217)
411 1z47_A CYSA, putative ABC-tran 95.2 0.01 3.6E-07 53.6 3.4 26 62-87 40-65 (355)
412 3lda_A DNA repair protein RAD5 95.2 0.0096 3.3E-07 54.7 3.2 24 62-85 177-200 (400)
413 1v43_A Sugar-binding transport 95.2 0.011 3.7E-07 53.8 3.5 26 62-87 36-61 (372)
414 3k1j_A LON protease, ATP-depen 95.2 0.0088 3E-07 57.8 3.1 27 63-89 60-86 (604)
415 3k53_A Ferrous iron transport 95.2 0.011 3.7E-07 51.0 3.3 24 63-86 3-26 (271)
416 1ls1_A Signal recognition part 95.2 0.014 4.7E-07 51.3 4.0 26 62-87 97-122 (295)
417 2j9r_A Thymidine kinase; TK1, 95.2 0.016 5.3E-07 48.7 4.2 27 61-87 26-52 (214)
418 2h57_A ADP-ribosylation factor 95.2 0.0087 3E-07 48.0 2.6 26 61-86 19-44 (190)
419 2gco_A H9, RHO-related GTP-bin 95.2 0.012 4E-07 47.9 3.4 26 61-86 23-48 (201)
420 2o52_A RAS-related protein RAB 95.2 0.0098 3.4E-07 48.4 2.9 25 61-85 23-47 (200)
421 2npi_A Protein CLP1; CLP1-PCF1 95.2 0.0088 3E-07 56.0 2.9 26 62-87 137-162 (460)
422 2bbs_A Cystic fibrosis transme 95.2 0.0093 3.2E-07 52.4 2.9 26 62-87 63-88 (290)
423 3nh6_A ATP-binding cassette SU 95.2 0.0051 1.7E-07 54.5 1.2 26 62-87 79-104 (306)
424 3tui_C Methionine import ATP-b 95.2 0.012 4E-07 53.5 3.5 26 62-87 53-78 (366)
425 4gzl_A RAS-related C3 botulinu 95.2 0.012 4.2E-07 48.0 3.4 25 61-85 28-52 (204)
426 2pjz_A Hypothetical protein ST 95.2 0.0092 3.1E-07 51.6 2.7 25 63-87 30-54 (263)
427 2atx_A Small GTP binding prote 95.1 0.009 3.1E-07 48.1 2.4 25 62-86 17-41 (194)
428 2hup_A RAS-related protein RAB 95.1 0.012 4E-07 48.0 3.2 25 61-85 27-51 (201)
429 1r6b_X CLPA protein; AAA+, N-t 95.1 0.013 4.4E-07 58.0 4.0 26 62-87 206-231 (758)
430 1g29_1 MALK, maltose transport 95.1 0.012 4.1E-07 53.5 3.4 26 62-87 28-53 (372)
431 2r8r_A Sensor protein; KDPD, P 95.1 0.018 6.2E-07 48.8 4.3 25 63-87 6-30 (228)
432 2g3y_A GTP-binding protein GEM 95.1 0.013 4.6E-07 48.7 3.4 25 61-85 35-59 (211)
433 3q3j_B RHO-related GTP-binding 95.1 0.015 5E-07 48.0 3.6 26 61-86 25-50 (214)
434 2fna_A Conserved hypothetical 95.1 0.016 5.5E-07 50.9 4.1 31 64-94 31-63 (357)
435 2cjw_A GTP-binding protein GEM 95.1 0.016 5.5E-07 46.9 3.8 25 62-86 5-29 (192)
436 2pt7_A CAG-ALFA; ATPase, prote 95.0 0.0079 2.7E-07 53.7 2.0 26 63-88 171-196 (330)
437 2z43_A DNA repair and recombin 95.0 0.013 4.6E-07 51.9 3.5 26 62-87 106-131 (324)
438 1u94_A RECA protein, recombina 95.0 0.014 4.9E-07 52.7 3.7 33 62-94 62-99 (356)
439 2fu5_C RAS-related protein RAB 95.0 0.009 3.1E-07 47.4 2.1 24 62-85 7-30 (183)
440 3gj0_A GTP-binding nuclear pro 95.0 0.015 5.1E-07 48.0 3.6 28 60-87 12-40 (221)
441 3d31_A Sulfate/molybdate ABC t 95.0 0.0089 3E-07 53.9 2.2 26 62-87 25-50 (348)
442 2xxa_A Signal recognition part 95.0 0.017 5.9E-07 53.5 4.2 27 61-87 98-124 (433)
443 3cpj_B GTP-binding protein YPT 95.0 0.015 5E-07 48.2 3.4 26 61-86 11-36 (223)
444 2i1q_A DNA repair and recombin 95.0 0.014 4.8E-07 51.5 3.4 25 62-86 97-121 (322)
445 2rcn_A Probable GTPase ENGC; Y 94.9 0.014 4.8E-07 52.8 3.3 24 63-86 215-238 (358)
446 2x77_A ADP-ribosylation factor 94.9 0.011 3.8E-07 47.3 2.5 23 62-84 21-43 (189)
447 3gd7_A Fusion complex of cysti 94.9 0.014 4.8E-07 53.4 3.4 26 62-87 46-71 (390)
448 3a1s_A Iron(II) transport prot 94.9 0.013 4.6E-07 50.2 3.1 25 61-85 3-27 (258)
449 3lxw_A GTPase IMAP family memb 94.9 0.015 5.2E-07 49.5 3.3 25 62-86 20-44 (247)
450 2fv8_A H6, RHO-related GTP-bin 94.9 0.016 5.4E-07 47.4 3.3 25 62-86 24-48 (207)
451 3bh0_A DNAB-like replicative h 94.9 0.018 6.2E-07 50.9 3.9 27 61-87 66-92 (315)
452 1w5s_A Origin recognition comp 94.8 0.014 4.7E-07 52.7 3.1 26 62-87 49-76 (412)
453 1nij_A Hypothetical protein YJ 94.8 0.015 5.1E-07 51.5 3.2 25 62-86 3-27 (318)
454 3kta_A Chromosome segregation 94.8 0.019 6.5E-07 45.9 3.5 24 65-88 28-51 (182)
455 3ozx_A RNAse L inhibitor; ATP 94.8 0.017 5.8E-07 55.1 3.6 29 59-87 21-49 (538)
456 2yv5_A YJEQ protein; hydrolase 94.8 0.017 5.9E-07 50.8 3.4 24 63-87 165-188 (302)
457 3b1v_A Ferrous iron uptake tra 94.7 0.018 6.3E-07 49.9 3.4 25 62-86 2-26 (272)
458 1oxx_K GLCV, glucose, ABC tran 94.7 0.0094 3.2E-07 53.9 1.5 26 62-87 30-55 (353)
459 3upu_A ATP-dependent DNA helic 94.7 0.019 6.4E-07 53.5 3.6 23 65-87 47-69 (459)
460 3e1s_A Exodeoxyribonuclease V, 94.7 0.019 6.6E-07 55.1 3.8 25 63-87 204-228 (574)
461 3iev_A GTP-binding protein ERA 94.7 0.018 6.1E-07 50.8 3.2 28 59-86 6-33 (308)
462 1ega_A Protein (GTP-binding pr 94.6 0.016 5.4E-07 50.9 2.9 25 62-86 7-31 (301)
463 2r6a_A DNAB helicase, replicat 94.6 0.022 7.5E-07 53.0 4.0 26 62-87 202-227 (454)
464 2oap_1 GSPE-2, type II secreti 94.6 0.013 4.6E-07 55.5 2.5 27 62-88 259-285 (511)
465 3l0i_B RAS-related protein RAB 94.6 0.0062 2.1E-07 49.4 0.1 24 61-84 31-54 (199)
466 4dhe_A Probable GTP-binding pr 94.6 0.011 3.7E-07 48.7 1.5 26 61-86 27-52 (223)
467 4dkx_A RAS-related protein RAB 94.6 0.024 8.1E-07 47.4 3.6 26 60-85 10-35 (216)
468 2ffh_A Protein (FFH); SRP54, s 94.6 0.024 8.2E-07 52.5 4.0 26 62-87 97-122 (425)
469 2qag_B Septin-6, protein NEDD5 94.6 0.02 6.7E-07 53.1 3.4 25 62-86 39-65 (427)
470 1u0l_A Probable GTPase ENGC; p 94.5 0.017 5.8E-07 50.8 2.7 24 63-86 169-192 (301)
471 3iby_A Ferrous iron transport 94.5 0.02 6.7E-07 49.2 3.0 23 64-86 2-24 (256)
472 1tq4_A IIGP1, interferon-induc 94.5 0.021 7.3E-07 52.6 3.4 25 62-86 68-92 (413)
473 1ko7_A HPR kinase/phosphatase; 94.4 0.024 8.1E-07 50.4 3.5 31 63-94 144-174 (314)
474 3f9v_A Minichromosome maintena 94.4 0.0093 3.2E-07 57.6 0.8 27 64-90 328-354 (595)
475 2yc2_C IFT27, small RAB-relate 94.3 0.0075 2.6E-07 48.8 0.0 25 62-86 19-43 (208)
476 2obl_A ESCN; ATPase, hydrolase 94.3 0.027 9.3E-07 50.7 3.6 27 62-88 70-96 (347)
477 3io5_A Recombination and repai 94.3 0.026 9E-07 50.3 3.4 29 57-87 24-52 (333)
478 1tf7_A KAIC; homohexamer, hexa 94.3 0.022 7.7E-07 53.9 3.2 22 62-83 38-59 (525)
479 2qnr_A Septin-2, protein NEDD5 94.2 0.022 7.4E-07 50.1 2.8 24 62-85 17-40 (301)
480 2orv_A Thymidine kinase; TP4A 94.2 0.035 1.2E-06 47.1 4.0 27 61-87 17-43 (234)
481 1xp8_A RECA protein, recombina 94.2 0.028 9.5E-07 51.0 3.5 34 62-95 73-111 (366)
482 1ni3_A YCHF GTPase, YCHF GTP-b 94.2 0.027 9.4E-07 51.5 3.4 25 61-85 18-42 (392)
483 3b5x_A Lipid A export ATP-bind 94.1 0.025 8.5E-07 54.4 3.1 26 62-87 368-393 (582)
484 2dpy_A FLII, flagellum-specifi 94.1 0.03 1E-06 52.0 3.6 28 62-89 156-183 (438)
485 1knx_A Probable HPR(Ser) kinas 94.1 0.025 8.6E-07 50.2 2.9 31 63-94 147-177 (312)
486 4djt_A GTP-binding nuclear pro 94.1 0.012 4E-07 48.4 0.7 25 61-85 9-33 (218)
487 3i8s_A Ferrous iron transport 94.1 0.03 1E-06 48.4 3.4 24 63-86 3-26 (274)
488 1mky_A Probable GTP-binding pr 94.1 0.032 1.1E-06 51.5 3.8 25 62-86 179-203 (439)
489 3th5_A RAS-related C3 botulinu 93.1 0.0094 3.2E-07 48.5 0.0 25 61-85 28-52 (204)
490 1tf7_A KAIC; homohexamer, hexa 94.0 0.032 1.1E-06 52.9 3.6 26 62-87 280-305 (525)
491 4dey_A Voltage-dependent L-typ 94.0 0.49 1.7E-05 42.2 11.0 115 66-188 145-273 (337)
492 3b60_A Lipid A export ATP-bind 94.0 0.024 8.1E-07 54.5 2.7 27 62-88 368-394 (582)
493 2q6t_A DNAB replication FORK h 93.9 0.036 1.2E-06 51.4 3.8 26 62-87 199-224 (444)
494 3r7w_A Gtpase1, GTP-binding pr 93.9 0.034 1.2E-06 48.9 3.4 25 62-86 2-26 (307)
495 1yqt_A RNAse L inhibitor; ATP- 93.9 0.033 1.1E-06 53.1 3.5 27 61-87 45-71 (538)
496 3cmu_A Protein RECA, recombina 93.8 0.094 3.2E-06 57.1 7.2 85 61-151 1425-1514(2050)
497 2aka_B Dynamin-1; fusion prote 93.8 0.034 1.2E-06 48.0 3.2 25 62-86 25-49 (299)
498 1t9h_A YLOQ, probable GTPase E 93.8 0.012 4.1E-07 52.1 0.2 25 62-86 172-196 (307)
499 3qf4_B Uncharacterized ABC tra 93.8 0.026 9E-07 54.4 2.6 27 62-88 380-406 (598)
500 2yl4_A ATP-binding cassette SU 93.7 0.026 8.9E-07 54.4 2.5 27 62-88 369-395 (595)
No 1
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=100.00 E-value=6.7e-45 Score=310.10 Aligned_cols=192 Identities=27% Similarity=0.421 Sum_probs=178.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCCc
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE 143 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~~ 143 (273)
|+|+|+|||||||+|+|++|+++||++|||++|++|+++..++++|+.+++++.+|.++|++++..++.+++.. .
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~~~l~~-----~ 75 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPK-----H 75 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHCCS-----S
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHHHhhcc-----C
Confidence 57999999999999999999999999999999999999999999999999999999999999999999998865 3
Q ss_pred ceEEEeCCCCCHHHHHHHHhh-----CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCC--------CCCCcH
Q 024067 144 SGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARF--------SAADAA 210 (273)
Q Consensus 144 ~g~IlDg~P~~~~qa~~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~--------~~~d~~ 210 (273)
.||||||||||..|++.|+.. ..+++||+|+||++++++|+.+|+.|+.||+.||..+.|+ +.||++
T Consensus 76 ~~~ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R~~~~~~g~~y~~~~~pp~~g~~l~~r~DD~~ 155 (206)
T 3sr0_A 76 GNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRINPETGEVYHVKYNPPPPGVKVIQREDDKP 155 (206)
T ss_dssp SCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCCTTCCCBCCGGGSH
T ss_pred CceEecCCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHHhCCccccCCCceeeeeccCCCCCceecccCCCCH
Confidence 689999999999999998654 4689999999999999999999999999999999877665 468899
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhc
Q 024067 211 SAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQ 260 (273)
Q Consensus 211 e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~ 260 (273)
+.+++|++.|++++.|+.+||+++++++.||+++++++||++|.++|...
T Consensus 156 e~i~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~~~~~eV~~~I~~~l~e~ 205 (206)
T 3sr0_A 156 EVIKKRLEVYREQTAPLIEYYKKKGILRIIDASKPVEEVYRQVLEVIGDG 205 (206)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999999999999999998653
No 2
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=100.00 E-value=2.3e-41 Score=290.12 Aligned_cols=189 Identities=24% Similarity=0.362 Sum_probs=170.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhccc
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYY 140 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~ 140 (273)
.++++|+|+|||||||+|+|++|+++||++|||++|++|+++..++++|+.+++++++|.++|++++..++.+++.+..+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~~~t~lg~~~~~~~~~G~lVpde~~~~lv~~~l~~~~~ 106 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVVLALLKEAMIKLVD 106 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHTTCCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHHcCCchHHHHHHHHhcCCCCCHHHHHHHHHHHHhhccc
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999976432
Q ss_pred CCcceEEEeCCCCCHHHHHHHHhh-CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHHH
Q 024067 141 RGESGFILDGIPRTRIQAEILDQI-VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRI 219 (273)
Q Consensus 141 ~~~~g~IlDg~P~~~~qa~~l~~~-~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~ 219 (273)
...|||+|||||+..|++.|+.. ..+++||+|+|+++++.+|+.+|..+. .+.||+++.+++|++.
T Consensus 107 -~~~g~ilDGfPRt~~Qa~~l~~~~~~~~~vi~l~v~~e~~~~Rl~~R~~~~------------~R~DD~~e~i~~Rl~~ 173 (217)
T 3umf_A 107 -KNCHFLIDGYPRELDQGIKFEKEVCPCLCVINFDVSEEVMRKRLLKRAETS------------NRVDDNEETIVKRFRT 173 (217)
T ss_dssp -TCSEEEEETBCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHSCC------------------CHHHHHHHHHHHHH
T ss_pred -cccCcccccCCCcHHHHHHHHHhCCccCEEEeccCCHHHHHHHHhcccccC------------CCCCCCHHHHHHHHHH
Confidence 36799999999999999999754 578999999999999999999997532 2568999999999999
Q ss_pred HHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhcCC
Q 024067 220 YAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQHM 262 (273)
Q Consensus 220 y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~~~ 262 (273)
|+++..|+.+||+++++++.||+++++++||++|.+.|.....
T Consensus 174 Y~~~t~pl~~~Y~~~~~l~~Idg~~~~eeV~~~I~~~l~k~G~ 216 (217)
T 3umf_A 174 FNELTKPVIEHYKQQNKVITIDASGTVDAIFDKVNHELQKFGV 216 (217)
T ss_dssp HHHHTHHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999986543
No 3
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=100.00 E-value=8.5e-42 Score=294.24 Aligned_cols=196 Identities=23% Similarity=0.384 Sum_probs=165.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccC
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~ 141 (273)
..+++.|+|+|||||||+|+.|+++||++||++++++|+++..++++|+.+++++.+|.++|++++..++.+++.+..+
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~t~lG~~i~~~~~~G~lvpdei~~~ll~~~l~~~~~- 85 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLIIGLVKERLKEADC- 85 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHSGGG-
T ss_pred cccceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCCChHHHHHHHHHhhccccccHHHHHHHHHHHhCccc-
Confidence 3578899999999999999999999999999999999999999999999999999999999999999999999987644
Q ss_pred CcceEEEeCCCCCHHHHHHHHhh-CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCC---------------C
Q 024067 142 GESGFILDGIPRTRIQAEILDQI-VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARF---------------S 205 (273)
Q Consensus 142 ~~~g~IlDg~P~~~~qa~~l~~~-~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~---------------~ 205 (273)
..||||||||++..|++.|+.. ..||+||+|+||++++++|+.+|+.|+.||+.||..+.|+ +
T Consensus 86 -~~g~ILDGfPRt~~Qa~~L~~~~~~~d~VI~Ldvp~e~l~~Rl~~R~~~~~~G~~Yh~~~~pp~~~~~~d~~g~~L~~R 164 (230)
T 3gmt_A 86 -ANGYLFDGFPRTIAQADAMKEAGVAIDYVLEIDVPFSEIIERMSGRRTHPASGRTYHVKFNPPKVEGKDDVTGEPLVQR 164 (230)
T ss_dssp -TTCEEEESCCCSHHHHHHHHHTTCCCSEEEEECCCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCC
T ss_pred -CCCeEecCCCCcHHHHHHHHHhCCCccEEEEEeCCHHHHHHHHHcCCcccccCCcccccCCCCCccCcCCCccCccccC
Confidence 4799999999999999999765 4789999999999999999999999999999999877665 4
Q ss_pred CCCcHHHHHHHHHHHHHhhHHHHHHHHhc-----------CcEEEEeCCCChhHHHHHHHHHHHh
Q 024067 206 AADAASAWKEKFRIYAEQGKSLEDYYSKQ-----------RKLLNFQVAAAPGETWQGLLSALHL 259 (273)
Q Consensus 206 ~~d~~e~~~~rl~~y~~~~~~l~~~y~~~-----------~~~~~id~~~s~~ev~~~I~~~l~~ 259 (273)
.||+++.+++|++.|++++.|+++||++. ++++.||+++++++|+++|.++|.+
T Consensus 165 ~DD~~e~i~~Rl~~y~~~t~pl~~~Y~~~~~~~~~~~~~~~~l~~idg~~~~~eV~~~i~~~l~~ 229 (230)
T 3gmt_A 165 DDDKEETVKKRLDVYEAQTKPLITYYGDWARRGAENGLKAPAYRKISGLGAVEEIRARVRRAQVS 229 (230)
T ss_dssp GGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCBTTBCCCEEEEECC-----------------
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCeEEEEECCCCHHHHHHHHHHHHhc
Confidence 67899999999999999999999999973 6899999999999999999998864
No 4
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=100.00 E-value=3.7e-36 Score=262.04 Aligned_cols=196 Identities=25% Similarity=0.403 Sum_probs=180.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhccc
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYY 140 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~ 140 (273)
.++++|+|+|+|||||||+|+.|++++|+++|++++++++....++++|+.+++++.+|..++++++..++...+....
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~~- 105 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQMVLSLVDEKLKTPQ- 105 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTTSSSHHHHHHHHHHHTTCCCCHHHHHHHHHHHTTSGG-
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHhccchHHHHHHHHHhcCCCCcHHHHHHHHHHHHhccc-
Confidence 3678999999999999999999999999999999999999999999999999999999999999999999999887653
Q ss_pred CCcceEEEeCCCCCHHHHHHHHhh-----CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCC-----------
Q 024067 141 RGESGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARF----------- 204 (273)
Q Consensus 141 ~~~~g~IlDg~P~~~~qa~~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~----------- 204 (273)
...+||+||||++..|++.|+.. ..||.||+|++|++++++|+.+|..|+.||+.||..+.|+
T Consensus 106 -~~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~ 184 (243)
T 3tlx_A 106 -CKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRLIHKPSGRIYHKIFNPPKVPFRDDVTNE 184 (243)
T ss_dssp -GSSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCC
T ss_pred -ccCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHcCCCCcccCcccccccCCCcccCccccccc
Confidence 36899999999999999988654 4689999999999999999999999999999999877665
Q ss_pred ----CCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHH
Q 024067 205 ----SAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALH 258 (273)
Q Consensus 205 ----~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~ 258 (273)
+.+|+++.+++|+..|++...++.+||.+.++++.||+++++++|+++|.+.|.
T Consensus 185 ~l~~r~dd~~e~i~~Rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~ 242 (243)
T 3tlx_A 185 PLIQREDDNEDVLKKRLTVFKSETSPLISYYKNKNLLINLDATQPANDLEKKISQHID 242 (243)
T ss_dssp BCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHH
T ss_pred cccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHc
Confidence 346789999999999999999999999999999999999999999999999875
No 5
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=100.00 E-value=1.3e-34 Score=246.68 Aligned_cols=194 Identities=27% Similarity=0.412 Sum_probs=177.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCCc
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE 143 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~~ 143 (273)
++|+|+|+|||||||+|+.|++++|+++|++|+++++...++++.++.+.+++.+|..++++++..++...+.... ..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~--~~ 78 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERLGKDD--CE 78 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHTSGG--GT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccc--cc
Confidence 4789999999999999999999999999999999999999999999999999999999999999999999887643 36
Q ss_pred ceEEEeCCCCCHHHHHHHHhh-----CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCC-------------
Q 024067 144 SGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFS------------- 205 (273)
Q Consensus 144 ~g~IlDg~P~~~~qa~~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~------------- 205 (273)
.+||+||||++..|+..+... ..||++|+|++|++++++|+.+|+.|+.||+.||..+.|+.
T Consensus 79 ~~~ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~ 158 (216)
T 3dl0_A 79 RGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELY 158 (216)
T ss_dssp TCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCGGGHHHHHHTEEEETTTCCEEETTTBCCSSTTBCTTTCCBEE
T ss_pred CCEEEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHCCCcCCccCCccccccCCCcccCcccccccccc
Confidence 889999999999999888654 25899999999999999999999999999999998776653
Q ss_pred --CCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHh
Q 024067 206 --AADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHL 259 (273)
Q Consensus 206 --~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~ 259 (273)
.+++++.+++|+..|.+...++.+||.+.+.++.||+++++++|+++|.+.|..
T Consensus 159 ~r~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~~ 214 (216)
T 3dl0_A 159 QRADDNEETVTKRLEVNMKQTAPLLDFYDEKGYLVNVNGQQDIQDVYADLKVLLGG 214 (216)
T ss_dssp CCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECSSCHHHHHHHHHHHHGG
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence 567899999999999999999999999988899999999999999999999864
No 6
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=100.00 E-value=6e-34 Score=242.43 Aligned_cols=194 Identities=26% Similarity=0.392 Sum_probs=177.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCCc
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE 143 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~~ 143 (273)
++|+|+|+|||||||+|+.|++++|++++++|+++++...++++.++.+.+++.+|..++++++..++.+.+.... ..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~--~~ 78 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEVTIGIVHERLSKDD--CQ 78 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSGG--GT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccc--CC
Confidence 4789999999999999999999999999999999999999999999999999999999999999999999887643 25
Q ss_pred ceEEEeCCCCCHHHHHHHHhh-----CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCC-------------
Q 024067 144 SGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFS------------- 205 (273)
Q Consensus 144 ~g~IlDg~P~~~~qa~~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~------------- 205 (273)
.+||+||||++..|+..|... ..||++|+|++|++++++|+.+|+.|+.||+.||..+.|+.
T Consensus 79 ~~~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~ 158 (216)
T 3fb4_A 79 KGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGRWICKTCGATYHTIFNPPAVEGICDKDGGELY 158 (216)
T ss_dssp TCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSEEEETTTCCEEETTTBCCSSTTBCTTTCCBEE
T ss_pred CcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCCccCCccccccCCCCcccccccccCccc
Confidence 789999999999999888654 24899999999999999999999999999999998776653
Q ss_pred --CCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHh
Q 024067 206 --AADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHL 259 (273)
Q Consensus 206 --~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~ 259 (273)
.+++++.+++|+..|.+...++.+||.+.+.++.||+++++++++++|.+.|..
T Consensus 159 ~r~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~~ 214 (216)
T 3fb4_A 159 QRIDDKPETVKNRLDVNMKQTQPLLDFYSQKGVLKDIDGQQDIKKVFVDINDLLGG 214 (216)
T ss_dssp CCGGGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHhHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHHHHh
Confidence 466789999999999999999999999988899999999999999999999864
No 7
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=100.00 E-value=6e-33 Score=239.80 Aligned_cols=199 Identities=29% Similarity=0.442 Sum_probs=176.4
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcc
Q 024067 60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGY 139 (273)
Q Consensus 60 ~~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~ 139 (273)
+.+++.|+|+|+|||||||+|+.|++++++++|++++++++....++++++.+++++..|..++++++..++..++....
T Consensus 13 ~~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~ 92 (233)
T 1ak2_A 13 SPKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLETPP 92 (233)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTSGG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCChhHHHHHHHHHCCCcCCHHHHHHHHHHHHhccc
Confidence 45678999999999999999999999999999999999999888888999999999999999999999999998887643
Q ss_pred cCCcceEEEeCCCCCHHHHHHHHhh-----CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCC---------
Q 024067 140 YRGESGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFS--------- 205 (273)
Q Consensus 140 ~~~~~g~IlDg~P~~~~qa~~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~--------- 205 (273)
...|||+||||++..|++.|..+ ..||++|+|+++++++.+|+.+|..++.||+.||..+.|+.
T Consensus 93 --~~~g~ildg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~ 170 (233)
T 1ak2_A 93 --CKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIHPQSGRSYHEEFNPPKEPMKDDITG 170 (233)
T ss_dssp --GTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCEECTTTCCEEBTTTBCCSSTTBCTTTC
T ss_pred --ccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcCCccCCccccccCCCcccccccccc
Confidence 25789999999999998877543 35899999999999999999999999999999987665442
Q ss_pred ------CCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhc
Q 024067 206 ------AADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQ 260 (273)
Q Consensus 206 ------~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~ 260 (273)
.+++.+.+++|+..|.+...++.++|.+.+.++.||+++++++|+++|.+.|...
T Consensus 171 ~~l~~r~d~~~~~~~~r~~~y~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~I~~~l~~~ 231 (233)
T 1ak2_A 171 EPLIRRSDDNKKALKIRLEAYHTQTTPLVEYYSKRGIHSAIDASQTPDVVFASILAAFSKA 231 (233)
T ss_dssp CBCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHhh
Confidence 3566889999999999999999999998778999999999999999999998753
No 8
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=1.9e-33 Score=240.47 Aligned_cols=194 Identities=22% Similarity=0.371 Sum_probs=171.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccC
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~ 141 (273)
++++|+|+|+|||||||+|+.|++++|+++|++|+++++....++++|+.+++++.+|..++++++..++.+++... .
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~t~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~--~ 81 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEIVLGLVKEKFDLG--V 81 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTC--CCHHHHHHHHHTCCCCHHHHHHHHHHHHHTT--T
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHHHHHHHHcCCHHHHHHHHHHHCCCcCCHHHHHHHHHHHHhcc--c
Confidence 56899999999999999999999999999999999999988888899999999999999999999999998888763 2
Q ss_pred CcceEEEeCCCCCHHHHHHHHhh-----CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCC-----------
Q 024067 142 GESGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFS----------- 205 (273)
Q Consensus 142 ~~~g~IlDg~P~~~~qa~~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~----------- 205 (273)
.+.+||+||||++..|++.|... ..||++|+|+++++++.+|+.+|..++.||+.||..+.|+.
T Consensus 82 ~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~ 161 (217)
T 3be4_A 82 CVNGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIERISGRCTHPASGRIYHVKYNPPKQPGIDDVTGEP 161 (217)
T ss_dssp TTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCSSTTBCTTTCCB
T ss_pred cCCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCccccCccccccCCCCccccccccccc
Confidence 36789999999999998877632 36899999999999999999999988899999998766543
Q ss_pred ----CCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHH
Q 024067 206 ----AADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSAL 257 (273)
Q Consensus 206 ----~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l 257 (273)
.+++.+.+++|+..|.+...++.+||++.+.++.||+++++++|+++|.+.|
T Consensus 162 l~~~~dd~~e~v~~r~~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l 217 (217)
T 3be4_A 162 LVWRDDDNAEAVKVRLDVFHKQTAPLVKFYEDLGILKRVNAKLPPKEVTEQIKKIL 217 (217)
T ss_dssp CBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHC
T ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHhhC
Confidence 2456889999999999999999999998778999999999999999998753
No 9
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=100.00 E-value=1.1e-32 Score=235.86 Aligned_cols=195 Identities=27% Similarity=0.437 Sum_probs=173.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-hccc
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLE-EGYY 140 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~-~~~~ 140 (273)
++++|+|+|+|||||||+|+.|++++++++|++|+++++...++++.|+.+++++.+|..++++.+..++.+.+. ..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~-- 80 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNP-- 80 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCG--
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhcc--
Confidence 578999999999999999999999999999999999999888889999999999999999999999999988886 32
Q ss_pred CCcceEEEeCCCCCHHHHHHHHhh-----CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCC----------
Q 024067 141 RGESGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFS---------- 205 (273)
Q Consensus 141 ~~~~g~IlDg~P~~~~qa~~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~---------- 205 (273)
..+.+||+||||++..|++.|+.+ ..||++|+|+++++++++|+.+|..++.||+.||..+.|+.
T Consensus 81 ~~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~d~~~~~ 160 (220)
T 1aky_A 81 ACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGE 160 (220)
T ss_dssp GGGSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCSSTTBCTTTCC
T ss_pred ccCCCeEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhCCCccCccCCccccccCCCccccccccccc
Confidence 135789999999999998766543 46899999999999999999999988999999987665542
Q ss_pred -----CCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHH
Q 024067 206 -----AADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALH 258 (273)
Q Consensus 206 -----~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~ 258 (273)
.+++.+.+++|+..|.+...++.++|.+.+.++.||+++++++|+++|...|.
T Consensus 161 ~l~~r~dd~~~~~~~rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~ 218 (220)
T 1aky_A 161 ALVQRSDDNADALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVWADILNKLG 218 (220)
T ss_dssp BCBCCTTCSHHHHHHHHHHHHHHTTHHHHHHHHHTCEEEEETTSCHHHHHHHHHHHHT
T ss_pred ccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHh
Confidence 34668889999999999999999999887789999999999999999999885
No 10
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=100.00 E-value=2e-32 Score=233.33 Aligned_cols=192 Identities=26% Similarity=0.425 Sum_probs=170.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCCc
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE 143 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~~ 143 (273)
++|+|+|+|||||||+++.|++++|+++|++|+++++.+..+++.|+.+++++.+|..++++++..++.+.+.... ..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~--~~ 78 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQED--CR 78 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGG--GG
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccc--cC
Confidence 4689999999999999999999999999999999999888888899999999999999999999999998887642 24
Q ss_pred ceEEEeCCCCCHHHHHHHHhh-CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCC---------------CCC
Q 024067 144 SGFILDGIPRTRIQAEILDQI-VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARF---------------SAA 207 (273)
Q Consensus 144 ~g~IlDg~P~~~~qa~~l~~~-~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~---------------~~~ 207 (273)
.+||+||||++..|+..|... ..||++|+|+++++++++|+.+|..++.||+.||....|+ +.+
T Consensus 79 ~~~i~dg~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~pp~~~~~~~~~~~~l~~r~d 158 (214)
T 1e4v_A 79 NGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKD 158 (214)
T ss_dssp GCEEEESCCCSHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCCTT
T ss_pred CCEEEeCCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHCCcccCCcCCcccccCCCCCccccccccccccccCCC
Confidence 789999999999998888654 4689999999999999999999988888999998765544 345
Q ss_pred CcHHHHHHHHHHHHHhhHHHHHHHHhc-----CcEEEEeCCCChhHHHHHHHHHH
Q 024067 208 DAASAWKEKFRIYAEQGKSLEDYYSKQ-----RKLLNFQVAAAPGETWQGLLSAL 257 (273)
Q Consensus 208 d~~e~~~~rl~~y~~~~~~l~~~y~~~-----~~~~~id~~~s~~ev~~~I~~~l 257 (273)
++++.+++|++.|.+...++.+||.+. +.++.||+++++++|+++|.+.|
T Consensus 159 d~~~~~~~rl~~y~~~~~~l~~~~~~~~~~~~~~~~~ida~~~~~~v~~~i~~~l 213 (214)
T 1e4v_A 159 DQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKIL 213 (214)
T ss_dssp CSHHHHHHHHHHHHHHTTHHHHHHHHHHHHTSCEEEEEETTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcccccCCeEEEEECCCCHHHHHHHHHHHh
Confidence 678899999999999999999999865 57999999999999999999876
No 11
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=100.00 E-value=1.1e-31 Score=230.59 Aligned_cols=191 Identities=19% Similarity=0.320 Sum_probs=169.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCCc
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE 143 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~~ 143 (273)
++|+|+|+|||||||+++.|++++|++++++|+++++.+..+++.|+.+++++.+|..++++++..++...+... . +
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~--~-g 77 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITIPMVLETLESK--G-K 77 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHTTTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHH--C-T
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEchHHHHHHHHHcCCHHHHHHHHHHHcCCcCcHHHHHHHHHHHHhcc--c-C
Confidence 479999999999999999999999999999999999988888899999999999999999999999998888763 1 4
Q ss_pred ceEEEeCCCCCHHHHHHHHhh-----CCCceEEEEccCHHHHHHHHhcCCcCCC-cccccccCCCCCCC-----------
Q 024067 144 SGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLVKRNLESEAFSP-HKEFLRLGGARFSA----------- 206 (273)
Q Consensus 144 ~g~IlDg~P~~~~qa~~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~-~~~~y~~~~~~~~~----------- 206 (273)
.+||+||||++..|++.|... ..||++|+|++|++++.+|+.+|..++. ||+.||..+.|+..
T Consensus 78 ~~vIlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~~g~~y~~~~~~p~~~~~~~~~~~~~ 157 (223)
T 2xb4_A 78 DGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGRRICKNNPNHPNNIFIDAIKPNGDVCRVCGGA 157 (223)
T ss_dssp TCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTBCEESSCTTSCCBTTCGGGCCBTTBCTTTCCB
T ss_pred CeEEEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcccCCccccCCccccccCCCccccccccccccc
Confidence 789999999999998888643 3689999999999999999999988777 99999987655432
Q ss_pred -----CCcHH-HHHHHHHHHHHhhHHHHH---HHHh-----cCcEEEEeCCCChhHHHHHHHHHH
Q 024067 207 -----ADAAS-AWKEKFRIYAEQGKSLED---YYSK-----QRKLLNFQVAAAPGETWQGLLSAL 257 (273)
Q Consensus 207 -----~d~~e-~~~~rl~~y~~~~~~l~~---~y~~-----~~~~~~id~~~s~~ev~~~I~~~l 257 (273)
+|+++ .+++|+..|.+...|+.+ +|.+ .+.++.||+++++++|+++|.+.|
T Consensus 158 l~~r~dd~~e~~i~~rl~~~~~~~~p~~~~~~~y~~~a~~~~~~~~~ida~~~~~~v~~~i~~~l 222 (223)
T 2xb4_A 158 LSARADDQDEGAINKRHDIYYNTVDGTLAAAYYYKNMAAKEGFVYIELDGEGSIDSIKDTLLAQL 222 (223)
T ss_dssp EECCGGGGCHHHHHHHHHHHTCTTTSHHHHHHHHHTTHHHHTCEEEEEETTSCHHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHHhHHHHHhhHHHHhhhhhccCCeEEEEECCCCHHHHHHHHHHHh
Confidence 34567 999999999999999999 9987 567999999999999999999876
No 12
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=100.00 E-value=3.1e-31 Score=227.87 Aligned_cols=198 Identities=24% Similarity=0.371 Sum_probs=173.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhccc
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYY 140 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~ 140 (273)
.++++|+|+|+|||||||+++.|++++|++++++|+++++....++++|+.+++++.+|..++++....++.+++...
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~-- 82 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVMTRLALHELKNL-- 82 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTC--
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHHHHHhhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHhcc--
Confidence 357899999999999999999999999999999999999888888899999999999999999988888887777642
Q ss_pred CCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCC---------------C
Q 024067 141 RGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARF---------------S 205 (273)
Q Consensus 141 ~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~---------------~ 205 (273)
...+||+||||++..|++.|+....+|++|+|+++++++++|+..|..++.||+.|+....|+ +
T Consensus 83 -~~~~~vid~~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~y~~~~~pp~~~~~~~~~~~~l~~r 161 (227)
T 1zd8_A 83 -TQYSWLLDGFPRTLPQAEALDRAYQIDTVINLNVPFEVIKQRLTARWIHPASGRVYNIEFNPPKTVGIDDLTGEPLIQR 161 (227)
T ss_dssp -TTSCEEEESCCCSHHHHHHHHTTSCCCEEEEEECCHHHHHHHHTCEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCC
T ss_pred -cCCCEEEeCCCCCHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHcCcCCCccCCccccccCCCCcccccccccccccCC
Confidence 246899999999999998888777899999999999999999999988877888887655443 2
Q ss_pred CCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhcCC
Q 024067 206 AADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQHM 262 (273)
Q Consensus 206 ~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~~~ 262 (273)
.+++.+.+++|+..|.+...++.+||.+.+.++.||++ ++++|+++|.+.|.....
T Consensus 162 ~~~~~e~~~~r~~~y~~~~~~l~~~y~~~~~~~~id~~-~~~~v~~~i~~~l~~~~~ 217 (227)
T 1zd8_A 162 EDDKPETVIKRLKAYEDQTKPVLEYYQKKGVLETFSGT-ETNKIWPYVYAFLQTKVP 217 (227)
T ss_dssp GGGSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECS-SHHHHHHHHHHHHTTTSC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHccCCEEEEeCC-CHHHHHHHHHHHHHhhcC
Confidence 34578899999999999999999999877789999998 999999999999986654
No 13
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=99.97 E-value=5.5e-30 Score=219.23 Aligned_cols=197 Identities=22% Similarity=0.316 Sum_probs=168.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhccc
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYY 140 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~ 140 (273)
.+|+.|+|+|+|||||||+++.|+++++++++++|+++++....+++.|+.+++++.+|..++++.+..++...+....+
T Consensus 3 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 82 (222)
T 1zak_A 3 ADPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDA 82 (222)
T ss_dssp CCSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCCchhHHHHHHHHcCCcCCHHHHHHHHHHHHhhccc
Confidence 35788999999999999999999999999999999999988888889999999999999999999888888777754322
Q ss_pred CCcceEEEeCCCCCHHHHHHHHhh-CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCC-----------CCC
Q 024067 141 RGESGFILDGIPRTRIQAEILDQI-VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFS-----------AAD 208 (273)
Q Consensus 141 ~~~~g~IlDg~P~~~~qa~~l~~~-~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~-----------~~d 208 (273)
...+||+||||++..|+..|... ..|+++|+|+++++++.+|+..|..++.||+.|+....|+. .++
T Consensus 83 -~~~~~vidg~~~~~~~~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~r~~~~~~g~~~~~~~~pp~~~~~~~~l~~r~~d 161 (222)
T 1zak_A 83 -QENGWLLDGYPRSYSQAMALETLEIRPDTFILLDVPDELLVERVVGRRLDPVTGKIYHLKYSPPENEEIASRLTQRFDD 161 (222)
T ss_dssp -HHTCEEEESCCCSHHHHHHHHTTTCCCSEEEEEECCHHHHHHHHTTEEECTTTCCEEESSSSCCCSSGGGGGCBCCTTC
T ss_pred -cCCcEEEECCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCCcccccCCccccccCCCcccccccccccCCCC
Confidence 24689999999999888888754 46899999999999999999999888889998887655442 245
Q ss_pred cHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhc
Q 024067 209 AASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQ 260 (273)
Q Consensus 209 ~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~ 260 (273)
..+.+++|+..|.....++.++|.. .++.||+++++++|+++|.+.+...
T Consensus 162 ~~~~i~~Rl~~~~~~~~~l~~~y~~--~~~~Id~~~~~~ev~~~I~~~l~~~ 211 (222)
T 1zak_A 162 TEEKVKLRLETYYQNIESLLSTYEN--IIVKVQGDATVDAVFAKIDELLGSI 211 (222)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHTTCC--CEEEEECSSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHh--cEEEEECCCCHHHHHHHHHHHHHhh
Confidence 6788999999999888888888864 4889999999999999999998653
No 14
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=99.96 E-value=1.5e-27 Score=200.83 Aligned_cols=188 Identities=24% Similarity=0.427 Sum_probs=157.6
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHc-cCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhc
Q 024067 60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQEL-SPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEG 138 (273)
Q Consensus 60 ~~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~-~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~ 138 (273)
+.+++.|+|+|+|||||||+++.|++++|+++|++|+++++.. ..++.+++.+++++.+|...+++....++.+.+...
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~ 91 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAISDN 91 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHHHHHHHhccCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhh
Confidence 4567899999999999999999999999999999999999764 367788999999999999999888877777666542
Q ss_pred ccCCcceEEEeCCCCCHHHHHHHHhh-CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHH
Q 024067 139 YYRGESGFILDGIPRTRIQAEILDQI-VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKF 217 (273)
Q Consensus 139 ~~~~~~g~IlDg~P~~~~qa~~l~~~-~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl 217 (273)
...+..+||+||+|++..++..++.. ..+|++|+|++|++++++|+..|.... .+.+++.+.+++|+
T Consensus 92 l~~g~~~~i~dg~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~Rl~~R~~~~------------~~~~~~~e~~~~r~ 159 (203)
T 1ukz_A 92 VKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIMLERLLERGKTS------------GRSDDNIESIKKRF 159 (203)
T ss_dssp HHTTCCEEEEETCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHHHH------------CCTTCSHHHHHHHH
T ss_pred hccCCCeEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccccC------------CCCCCCHHHHHHHH
Confidence 22233689999999999998888654 458999999999999999998875210 02356778899999
Q ss_pred HHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHh
Q 024067 218 RIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHL 259 (273)
Q Consensus 218 ~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~ 259 (273)
..|.+...++.++|...+.++.||+++++++++++|...+..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~vi~id~~~~~e~v~~~i~~~l~~ 201 (203)
T 1ukz_A 160 NTFKETSMPVIEYFETKSKVVRVRCDRSVEDVYKDVQDAIRD 201 (203)
T ss_dssp HHHHHTTHHHHHHHHTTTCEEEEECSSCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHhc
Confidence 999998899999998878888999999999999999998864
No 15
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=99.96 E-value=3.2e-27 Score=197.09 Aligned_cols=186 Identities=20% Similarity=0.349 Sum_probs=158.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccC
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~ 141 (273)
+++.|+|+|+|||||||+|+.|++++|++++++|++++.....+++.++.+++++.+|..++.+....++...+.... .
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~-~ 86 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLETVLDMLRDAMVAKV-N 86 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHT-T
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhcc-c
Confidence 567999999999999999999999999999999999998887888999999999999999999888888877776432 2
Q ss_pred CcceEEEeCCCCCHHHHHHHHhh-CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHHHH
Q 024067 142 GESGFILDGIPRTRIQAEILDQI-VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIY 220 (273)
Q Consensus 142 ~~~g~IlDg~P~~~~qa~~l~~~-~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~y 220 (273)
.+.++|+||+|++..|.+.+... ..++++|+|++|++++.+|+.+|.... .+.+++.+.+.+|+..|
T Consensus 87 ~~~~vi~d~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~------------~~~~~~~~~~~~r~~~~ 154 (196)
T 2c95_A 87 TSKGFLIDGYPREVQQGEEFERRIGQPTLLLYVDAGPETMTQRLLKRGETS------------GRVDDNEETIKKRLETY 154 (196)
T ss_dssp TCSCEEEESCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHTSS------------SCGGGSHHHHHHHHHHH
T ss_pred cCCcEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHccCCcC------------CCCCCCHHHHHHHHHHH
Confidence 35789999999999988877543 568999999999999999998875311 13355678889999999
Q ss_pred HHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhc
Q 024067 221 AEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQ 260 (273)
Q Consensus 221 ~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~ 260 (273)
.....++.++|...+.++.||++.++++++++|...+...
T Consensus 155 ~~~~~~~~~~~~~~~~~~~Id~~~~~e~v~~~i~~~l~~~ 194 (196)
T 2c95_A 155 YKATEPVIAFYEKRGIVRKVNAEGSVDSVFSQVCTHLDAL 194 (196)
T ss_dssp HHHTHHHHHHHHHHTCEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHHHh
Confidence 9988998888987777888999999999999999998753
No 16
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=99.96 E-value=6.4e-27 Score=194.36 Aligned_cols=183 Identities=24% Similarity=0.353 Sum_probs=157.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccC
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~ 141 (273)
+++.|+|+|+|||||||+++.|++++|++++++|+++++...++++.++.+.+++.+|...+++....++...+...
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~--- 81 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDAN--- 81 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHTS---
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhc---
Confidence 46789999999999999999999999999999999999887778889999999999999999988888888877653
Q ss_pred CcceEEEeCCCCCHHHHHHHHhh----CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHH
Q 024067 142 GESGFILDGIPRTRIQAEILDQI----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKF 217 (273)
Q Consensus 142 ~~~g~IlDg~P~~~~qa~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl 217 (273)
.+.++|+||+|++..+...+... ..+|++|+|++|++++.+|+..|.... .+.+++.+.+.+|+
T Consensus 82 ~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~------------~r~~~~~~~~~~ri 149 (194)
T 1qf9_A 82 QGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESS------------GRSDDNIESIKKRF 149 (194)
T ss_dssp TTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHTTS------------CCTTCSHHHHHHHH
T ss_pred CCCCEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHHHhccccC------------CCCCCCHHHHHHHH
Confidence 35789999999999888777433 258999999999999999998875311 13456788899999
Q ss_pred HHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHh
Q 024067 218 RIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHL 259 (273)
Q Consensus 218 ~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~ 259 (273)
..|.+...++.++|...+.++.||+++++++++++|...+..
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~i~~~l~~ 191 (194)
T 1qf9_A 150 NTFNVQTKLVIDHYNKFDKVKIIPANRDVNEVYNDVENLFKS 191 (194)
T ss_dssp HHHHHTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHHH
Confidence 999988889999998877788999999999999999999875
No 17
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=99.96 E-value=1.4e-27 Score=201.08 Aligned_cols=179 Identities=29% Similarity=0.498 Sum_probs=152.7
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcc
Q 024067 60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGY 139 (273)
Q Consensus 60 ~~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~ 139 (273)
+.++++|+|+|+|||||||+|+.|++.+|+++|++|+++++....+++.++.+++++.+|..++++....++.+.+...
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~- 95 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNNP- 95 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSG-
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHHHHHcCChHHHHHHHHHHcCCcccHHHHHHHHHHHHhcc-
Confidence 4567899999999999999999999999999999999999888888899999999999999999998888887777643
Q ss_pred cCCcceEEEeCCCCCHHHHHHHHhh-----CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHH
Q 024067 140 YRGESGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWK 214 (273)
Q Consensus 140 ~~~~~g~IlDg~P~~~~qa~~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~ 214 (273)
....+||+||+|++..|++.++.. ..|+++|+|++|++++.+|+..|. +.+++++.++
T Consensus 96 -~~~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~----------------r~~~~~e~~~ 158 (201)
T 2cdn_A 96 -DAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRG----------------RADDTDDVIL 158 (201)
T ss_dssp -GGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHC----------------CTTCSHHHHH
T ss_pred -cCCCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC----------------CCCCCHHHHH
Confidence 235789999999999988776543 248999999999999999998874 1245677899
Q ss_pred HHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHH
Q 024067 215 EKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALH 258 (273)
Q Consensus 215 ~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~ 258 (273)
+|+..|.....++.++| ...++.||+++++++++++|...+.
T Consensus 159 ~r~~~~~~~~~~~~~~~--~~~~~~Id~~~~~eev~~~I~~~l~ 200 (201)
T 2cdn_A 159 NRMKVYRDETAPLLEYY--RDQLKTVDAVGTMDEVFARALRALG 200 (201)
T ss_dssp HHHHHHHHHTTTHHHHT--TTTEEEEECCSCHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhHHHHHHh--cCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 99999988888888877 3458889999999999999998764
No 18
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=99.95 E-value=5.1e-27 Score=196.35 Aligned_cols=186 Identities=25% Similarity=0.423 Sum_probs=157.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccC
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~ 141 (273)
++++|+|+|+|||||||+|+.|++++|++++++|++++.....+++.++.+.+++.+|..++++.+..++.+.+.... .
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~-~ 89 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIVLELLKEAMVASL-G 89 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHT-T
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccc-c
Confidence 467899999999999999999999999999999999998876778889999999999999999888888877765431 2
Q ss_pred CcceEEEeCCCCCHHHHHHHHhh-CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHHHH
Q 024067 142 GESGFILDGIPRTRIQAEILDQI-VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIY 220 (273)
Q Consensus 142 ~~~g~IlDg~P~~~~qa~~l~~~-~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~y 220 (273)
.+.+||+||+|.+..|+..|... ..||++|+|++|++++.+|+.+|.... .+.+++.+.+.+|+..|
T Consensus 90 ~~~~vi~dg~~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~------------~~~~~~~~~~~~r~~~~ 157 (199)
T 2bwj_A 90 DTRGFLIDGYPREVKQGEEFGRRIGDPQLVICMDCSADTMTNRLLQMSRSS------------LPVDDTTKTIAKRLEAY 157 (199)
T ss_dssp SCSCEEEETCCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHTCCCC------------SCHHHHHHHHHHHHHHH
T ss_pred cCccEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHcCCCCC------------CCCCCCHHHHHHHHHHH
Confidence 35789999999999988877543 378999999999999999999886311 12344567889999999
Q ss_pred HHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhc
Q 024067 221 AEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQ 260 (273)
Q Consensus 221 ~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~ 260 (273)
.....++.++|...+.++.||+++++++++++|...+...
T Consensus 158 ~~~~~~~~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~~~ 197 (199)
T 2bwj_A 158 YRASIPVIAYYETKTQLHKINAEGTPEDVFLQLCTAIDSI 197 (199)
T ss_dssp HHHHHHHHHHHHHHSEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHHh
Confidence 8888888889987777788999999999999999988754
No 19
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=99.95 E-value=5e-27 Score=194.73 Aligned_cols=178 Identities=27% Similarity=0.478 Sum_probs=150.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccC
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~ 141 (273)
+++.|+|+|+|||||||+++.|++++|++++++|+++++.+.++++.++.+.+++.+|..++++.+..++.+.+.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~l~----- 77 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDLILELIREELA----- 77 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHCC-----
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHhc-----
Confidence 578999999999999999999999999999999999998877888899999999999999999888777766543
Q ss_pred CcceEEEeCCCCCHHHHHHHHhhC-----CCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHH
Q 024067 142 GESGFILDGIPRTRIQAEILDQIV-----DVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEK 216 (273)
Q Consensus 142 ~~~g~IlDg~P~~~~qa~~l~~~~-----~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~r 216 (273)
.++|+||+|++..|...++... .|+.+|+|++|++++.+|+..|.... + +.+++.+.+++|
T Consensus 78 --~~~i~dg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~--~----------r~~~~~~~~~~r 143 (186)
T 3cm0_A 78 --ERVIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILRRAELE--G----------RSDDNEETVRRR 143 (186)
T ss_dssp --SEEEEESCCCSHHHHHHHHHHHHHTTEEEEEEEEEECCHHHHHHHHHHHHHHH--T----------CSSCCHHHHHHH
T ss_pred --CCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccccC--C----------CCCCCHHHHHHH
Confidence 3499999999988877655321 37899999999999999998874100 0 235567889999
Q ss_pred HHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHH
Q 024067 217 FRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALH 258 (273)
Q Consensus 217 l~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~ 258 (273)
+..|.....++.++|...+.++.||++.++++++++|.+.+.
T Consensus 144 ~~~~~~~~~~l~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~ 185 (186)
T 3cm0_A 144 LEVYREKTEPLVGYYEARGVLKRVDGLGTPDEVYARIRAALG 185 (186)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHhc
Confidence 999988888888999887778999999999999999998763
No 20
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=99.95 E-value=2.2e-26 Score=191.47 Aligned_cols=186 Identities=22% Similarity=0.404 Sum_probs=152.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHcc-CCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcc-
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELS-PRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGY- 139 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~-~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~- 139 (273)
+++.|+|+|+|||||||+|+.|++.+|+++|++|+++++... +.+.+++.+++++.+|..+++++...++...+....
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~ 81 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMA 81 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhhhc
Confidence 367899999999999999999999999999999999987653 456788899999999999998877776665554321
Q ss_pred -cCCcceEEEeCCCCCHHHHHHHHhh----CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHH
Q 024067 140 -YRGESGFILDGIPRTRIQAEILDQI----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWK 214 (273)
Q Consensus 140 -~~~~~g~IlDg~P~~~~qa~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~ 214 (273)
.....+||+||+|.+..+...+... ..+|++|+|++|++++++|+..|.... .+.+++.+.++
T Consensus 82 ~~~~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~------------~r~~~~~~~~~ 149 (196)
T 1tev_A 82 ANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSS------------GRSDDNRESLE 149 (196)
T ss_dssp HCTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHHTS------------SCCSCCHHHHH
T ss_pred cccCCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHHHcccccC------------CCCCCCHHHHH
Confidence 1235789999999998887655432 257899999999999999998775210 13456678889
Q ss_pred HHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHh
Q 024067 215 EKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHL 259 (273)
Q Consensus 215 ~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~ 259 (273)
+++..|.....++.++|.+.+.++.||++.++++++++|.+.+..
T Consensus 150 ~~~~~~~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~ 194 (196)
T 1tev_A 150 KRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVQIFDK 194 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence 999999999999999999877788999999999999999999865
No 21
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.93 E-value=5.7e-24 Score=184.72 Aligned_cols=197 Identities=24% Similarity=0.381 Sum_probs=162.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccC
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~ 141 (273)
++.+|+|+|+|||||||+++.|++++|+.+++.|++++......++.+..+..++.++..+++..+.+.+...+...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~--- 102 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENR--- 102 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC---
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc---
Confidence 57899999999999999999999999999999999998766556678888888888898899888888877766542
Q ss_pred CcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCccccccc-CC------------CCCC--C
Q 024067 142 GESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRL-GG------------ARFS--A 206 (273)
Q Consensus 142 ~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~-~~------------~~~~--~ 206 (273)
...+|++||+|++..|++.+.....++++|+|+++++++++|+..|..+..+|+.+.. .. .|.. .
T Consensus 103 ~~~~~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSgrv~al~~~~P~~lllD~~~~EP~~~ld 182 (246)
T 2bbw_A 103 RGQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSGRVYNLDFNPPHVHGIDDVTGEPLVQQE 182 (246)
T ss_dssp TTSCEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTSCCSSTTBCTTTCCBCBCCG
T ss_pred CCCeEEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCCCccccccCCCcccccccccccccccCC
Confidence 2467999999999887777766667899999999999999999988877777765332 11 1211 1
Q ss_pred CCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhcCC
Q 024067 207 ADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQHM 262 (273)
Q Consensus 207 ~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~~~ 262 (273)
+++.+.+.+++..|.+...++.+||.+.+.++.||++.+ ++|+++|.+.+.....
T Consensus 183 ~~~~~~i~~~l~~~~~~~~~v~~~~~~~~~~~~id~~~~-~~v~~~i~~~l~~~~~ 237 (246)
T 2bbw_A 183 DDKPEAVAARLRQYKDVAKPVIELYKSRGVLHQFSGTET-NKIWPYVYTLFSNKIT 237 (246)
T ss_dssp GGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHHHHHHHTTSC
T ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHhhcCcEEEECCCCc-HHHHHHHHHHHHhhCC
Confidence 335678899999999999999999998888999999888 9999999999987644
No 22
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=99.82 E-value=7.3e-19 Score=142.77 Aligned_cols=170 Identities=16% Similarity=0.131 Sum_probs=119.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCC----ChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcc
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPR----SALYKQIANAVNEGKLVPEDVIFALLSKRLEEGY 139 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~----~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~ 139 (273)
+.|+|+|+|||||||+++.| +.+|++++++++++++..... ...+.....+... .+++.+..++.+.+..
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~-- 75 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREI---YGDGVVARLCVEELGT-- 75 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEEHHHHHHHHHHHHC---CCHHHHHHHHHHH---HCTTHHHHHHHHHHCS--
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhh---CCHHHHHHHHHHHHHh--
Confidence 57899999999999999999 999999999999999765422 2233333333332 1233455555565632
Q ss_pred cCCcceEEEeCCCCCHHHHHHHHhhC-CCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHH
Q 024067 140 YRGESGFILDGIPRTRIQAEILDQIV-DVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFR 218 (273)
Q Consensus 140 ~~~~~g~IlDg~P~~~~qa~~l~~~~-~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~ 218 (273)
.....+|+||+ ++..+.+.|.... .++++|+|++|.+++.+|+..|.... ...+.+.+.+++.
T Consensus 76 -~~~~~vi~dg~-~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~--------------~~~~~~~~~~r~~ 139 (179)
T 3lw7_A 76 -SNHDLVVFDGV-RSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIERLRSD--------------DSKEISELIRRDR 139 (179)
T ss_dssp -CCCSCEEEECC-CCHHHHHHHHHHHCSCEEEEEEECCHHHHHHHHHTCC------------------CCCHHHHHHHHH
T ss_pred -cCCCeEEEeCC-CCHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccCCC--------------CcchHHHHHHHHH
Confidence 23578999999 8999988887654 67899999999999999999886310 1234556666664
Q ss_pred HHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHh
Q 024067 219 IYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHL 259 (273)
Q Consensus 219 ~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~ 259 (273)
.... .+...|+...+ +.||++++++++.++|...+..
T Consensus 140 ~~~~--~~~~~~~~~ad--~vId~~~~~~~~~~~i~~~l~~ 176 (179)
T 3lw7_A 140 EELK--LGIGEVIAMAD--YIITNDSNYEEFKRRCEEVTDR 176 (179)
T ss_dssp HHHH--HTHHHHHHTCS--EEEECCSCHHHHHHHHHHHHHH
T ss_pred hhhc--cChHhHHHhCC--EEEECCCCHHHHHHHHHHHHHH
Confidence 3221 22344444444 4577778999999999998864
No 23
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=99.79 E-value=1e-17 Score=138.86 Aligned_cols=161 Identities=16% Similarity=0.126 Sum_probs=110.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHh---CCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHH-----------H
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLL---EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIF-----------A 129 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~---g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~-----------~ 129 (273)
+.|+|+|+|||||||+++.|++++ |++++++++ ...+..++.+++++.+|...++.... .
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~------~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~l~~ 74 (195)
T 2pbr_A 1 MLIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYRE------PGGTKVGEVLREILLTEELDERTELLLFEASRSKLIEE 74 (195)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEES------SCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC------CCCCchHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999998 999999863 34567888888888878665553221 1
Q ss_pred HHHHHHHhcccCCcceEEEe----------CCCCCHH--HHHHHHh----hCCCceEEEEccCHHHHHHHHhcCCcCCCc
Q 024067 130 LLSKRLEEGYYRGESGFILD----------GIPRTRI--QAEILDQ----IVDVDLVINFKSIEDQLVKRNLESEAFSPH 193 (273)
Q Consensus 130 ll~~~l~~~~~~~~~g~IlD----------g~P~~~~--qa~~l~~----~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~ 193 (273)
.+...+.. +..+|+| |+|+... +...+.. ...||++|+|++|++++.+|+.+|..
T Consensus 75 ~i~~~l~~-----~~~vi~dr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~~---- 145 (195)
T 2pbr_A 75 KIIPDLKR-----DKVVILDRFVLSTIAYQGYGKGLDVEFIKNLNEFATRGVKPDITLLLDIPVDIALRRLKEKNR---- 145 (195)
T ss_dssp THHHHHHT-----TCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTTTC----
T ss_pred HHHHHHhC-----CCEEEECcchhHHHHHccccCCCCHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHhhccCc----
Confidence 22222322 3567777 6666432 3333321 12689999999999999999986431
Q ss_pred ccccccCCCCCCCCCcHHHHHHHH-HHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhc
Q 024067 194 KEFLRLGGARFSAADAASAWKEKF-RIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQ 260 (273)
Q Consensus 194 ~~~y~~~~~~~~~~d~~e~~~~rl-~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~ 260 (273)
.+ .++ +.+++ ..|.+.. .+| +.++.||+++++++++++|.+.+...
T Consensus 146 ------------~~-~~~-~~~~~~~~~~~~~----~~~---~~~~~Id~~~~~~~~~~~i~~~l~~~ 192 (195)
T 2pbr_A 146 ------------FE-NKE-FLEKVRKGFLELA----KEE---ENVVVIDASGEEEEVFKEILRALSGV 192 (195)
T ss_dssp ------------CC-CHH-HHHHHHHHHHHHH----HHS---TTEEEEETTSCHHHHHHHHHHHHHTT
T ss_pred ------------cc-hHH-HHHHHHHHHHHHH----hhC---CCEEEEECCCCHHHHHHHHHHHHHHH
Confidence 12 233 44444 4454332 223 45789999999999999999998754
No 24
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=99.77 E-value=1.4e-17 Score=143.39 Aligned_cols=176 Identities=14% Similarity=0.058 Sum_probs=116.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCC--CeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHH-HHHHHHh
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEV--PHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFAL-LSKRLEE 137 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g~--~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~l-l~~~l~~ 137 (273)
.+++.|+|+|+|||||||+++.|++.++. .++.+ ..+.+++.++.+++++.++....+....-+ ...+...
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~------~~p~~~~~g~~i~~~~~~~~~~~~~~~~ll~~a~r~~~ 97 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT------REPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREH 97 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE------CTTTTCHHHHHHHHHTTC---CCHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceee------cCCCCCchHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999974 44433 345678899999999988875444433221 1222221
Q ss_pred c------ccCCcceEEEe----------CCCCCHHHHH--HHHhh----CCCceEEEEccCHHHHHHHHhcCCcCCCccc
Q 024067 138 G------YYRGESGFILD----------GIPRTRIQAE--ILDQI----VDVDLVINFKSIEDQLVKRNLESEAFSPHKE 195 (273)
Q Consensus 138 ~------~~~~~~g~IlD----------g~P~~~~qa~--~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~ 195 (273)
. ....+..+|+| |+|++..+.. .+..+ ..||++|+|++|++++.+|+.+|....
T Consensus 98 ~~~~i~~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~~~~~pd~vi~L~~~~e~~~~R~~~R~~~~---- 173 (229)
T 4eaq_A 98 LVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQ---- 173 (229)
T ss_dssp CCCCCHHHHHTTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHCCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCCc----
Confidence 0 01134678999 9998765543 33332 479999999999999999999885311
Q ss_pred ccccCCCCCCCCCcHHHHHHHHHH-HHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhc
Q 024067 196 FLRLGGARFSAADAASAWKEKFRI-YAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQ 260 (273)
Q Consensus 196 ~y~~~~~~~~~~d~~e~~~~rl~~-y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~ 260 (273)
.+.++....+.+|+.. |.+. .+.| .+.++.||+++++++|+++|.+.|...
T Consensus 174 --------dr~e~~~~~~~~rv~~~y~~l----~~~~--~~~~~vIDa~~s~eev~~~I~~~l~~~ 225 (229)
T 4eaq_A 174 --------NRLDQEDLKFHEKVIEGYQEI----IHNE--SQRFKSVNADQPLENVVEDTYQTIIKY 225 (229)
T ss_dssp ---------CCCHHHHHHHHHHHHHHHHH----TTTC--TTTEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred --------cchhhhhHHHHHHHHHHHHHH----HHhC--CCCEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 1223334455555543 4332 2222 246899999999999999999998754
No 25
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=99.74 E-value=2.6e-17 Score=138.14 Aligned_cols=167 Identities=14% Similarity=0.172 Sum_probs=108.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHhccc
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNE-GKLVPEDVIFALLSKRLEEGYY 140 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~-g~~~~~~~~~~ll~~~l~~~~~ 140 (273)
++..|+|+|+|||||||+++.|++.+|++++++|++++.... ..+.+++.. |.....+....++....
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~~~g------~~i~~~~~~~~~~~~~~~e~~~l~~l~----- 92 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEERFH------KTVGELFTERGEAGFRELERNMLHEVA----- 92 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHHT------SCHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchHHHHHHhC------CcHHHHHHhcChHHHHHHHHHHHHHHh-----
Confidence 567899999999999999999999999999999998876432 122232221 11111122222322211
Q ss_pred CCcceEEEe---CCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHh-cCCcCCCcccccccCCCCCCCCCcHHHHHHH
Q 024067 141 RGESGFILD---GIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNL-ESEAFSPHKEFLRLGGARFSAADAASAWKEK 216 (273)
Q Consensus 141 ~~~~g~IlD---g~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~-~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~r 216 (273)
...++|++ |.+......+.+. .++.+|+|++|.+++.+|+. .+...+ ...+++.+.+.++
T Consensus 93 -~~~~~vi~~ggg~~~~~~~~~~l~---~~~~vi~L~~~~e~l~~Rl~~~~~~Rp------------~~~~~~~~~~~~~ 156 (199)
T 3vaa_A 93 -EFENVVISTGGGAPCFYDNMEFMN---RTGKTVFLNVHPDVLFRRLRIAKQQRP------------ILQGKEDDELMDF 156 (199)
T ss_dssp -TCSSEEEECCTTGGGSTTHHHHHH---HHSEEEEEECCHHHHHHHHHHTGGGCG------------GGTTCCHHHHHHH
T ss_pred -hcCCcEEECCCcEEccHHHHHHHH---cCCEEEEEECCHHHHHHHHhcCCCCCC------------CcCCCChhhHHHH
Confidence 24678888 4555555444443 36799999999999999998 443211 1123344556666
Q ss_pred HHHHHHhhHHHHHHHHhcCcEEEEeCCC-ChhHHHHHHHHHHHhc
Q 024067 217 FRIYAEQGKSLEDYYSKQRKLLNFQVAA-APGETWQGLLSALHLQ 260 (273)
Q Consensus 217 l~~y~~~~~~l~~~y~~~~~~~~id~~~-s~~ev~~~I~~~l~~~ 260 (273)
+..+.+.. ..+|... -+.||+++ ++++++++|.+.+...
T Consensus 157 i~~~~~~r---~~~y~~a--d~~Idt~~~s~ee~~~~I~~~l~~~ 196 (199)
T 3vaa_A 157 IIQALEKR---APFYTQA--QYIFNADELEDRWQIESSVQRLQEL 196 (199)
T ss_dssp HHHHHHHH---HHHHTTS--SEEEECCCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHhhC--CEEEECCCCCHHHHHHHHHHHHHHH
Confidence 65554433 3466653 35678776 8999999999998764
No 26
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=99.72 E-value=1.4e-16 Score=131.58 Aligned_cols=170 Identities=15% Similarity=0.180 Sum_probs=100.6
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhC-----CCeechhHHHHHHc-cCCChHHHHHHHHHHCCCCCCH--HHHHHHHHHH
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLVRQEL-SPRSALYKQIANAVNEGKLVPE--DVIFALLSKR 134 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g-----~~~is~~dllr~~~-~~~~~~g~~i~~~l~~g~~~~~--~~~~~ll~~~ 134 (273)
++.|+|+|+|||||||+++.|+++++ +.+++.++++++.+ ......+. . ..+...+. ......+..+
T Consensus 1 M~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~ 75 (194)
T 1nks_A 1 MKIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDR---D--EMRKLSVEKQKKLQIDAAKG 75 (194)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHTTTSCSSH---H--HHTTSCHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHHHHHHhcccccch---h--hhhcCCHHHHHHHHHHHHHH
Confidence 36899999999999999999999998 88999899887654 21111000 0 01222222 2222222222
Q ss_pred HHhcc-cCCcceEEEeCCCCCHHH--------HHHHHhhCCCceEEEEccCHHHHHHH-Hhc--CCcCCCcccccccCCC
Q 024067 135 LEEGY-YRGESGFILDGIPRTRIQ--------AEILDQIVDVDLVINFKSIEDQLVKR-NLE--SEAFSPHKEFLRLGGA 202 (273)
Q Consensus 135 l~~~~-~~~~~g~IlDg~P~~~~q--------a~~l~~~~~~d~vI~L~~~~e~l~~R-l~~--R~~~~~~~~~y~~~~~ 202 (273)
+...- ...+..+|+||++....| ...+... .|+++|+|++|++++++| +.. |...+
T Consensus 76 i~~~l~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~vi~l~~~~~~~~~rr~~~~~R~~~~----------- 143 (194)
T 1nks_A 76 IAEEARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEI-NPSVIFLLEADPKIILSRQKRDTTRNRND----------- 143 (194)
T ss_dssp HHHHHHHTCSSEEEEEECSEEEETTEEEESSCHHHHHHH-CCSEEEEEECCHHHHHHHHHHCTTTCCCC-----------
T ss_pred HHHHhhccCCCEEEECCchhhccccccccCCCHHHHHhc-CCCEEEEEeCCHHHHHHHHHhhcccCCCC-----------
Confidence 22210 013578999998654433 2333332 589999999999998866 656 53200
Q ss_pred CCCCCCcHHHH--HHHHHHHHHhhHHHHHHHHhcCcEEEE-eCCCChhHHHHHHHHHH
Q 024067 203 RFSAADAASAW--KEKFRIYAEQGKSLEDYYSKQRKLLNF-QVAAAPGETWQGLLSAL 257 (273)
Q Consensus 203 ~~~~~d~~e~~--~~rl~~y~~~~~~l~~~y~~~~~~~~i-d~~~s~~ev~~~I~~~l 257 (273)
....+.+ .+++... .......|. ...++.| |+++++++++++|.+.|
T Consensus 144 ----~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~I~d~~~~~e~v~~~I~~~l 193 (194)
T 1nks_A 144 ----YSDESVILETINFARY---AATASAVLA-GSTVKVIVNVEGDPSIAANEIIRSM 193 (194)
T ss_dssp ----CCSHHHHHHHHHHHHH---HHHHHHHHH-TCEEEEEECCSSCHHHHHHHHHHHH
T ss_pred ----ccCHHHHHHHHHHHHH---HHHHHHHhc-CCcEEEEeCCCCCHHHHHHHHHHHh
Confidence 1112222 2222221 122333342 2457888 98899999999998876
No 27
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=99.72 E-value=1.3e-15 Score=128.93 Aligned_cols=168 Identities=13% Similarity=0.062 Sum_probs=107.7
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh--CCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHH-----------
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLL--EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFA----------- 129 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~--g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~----------- 129 (273)
++.|+|.|++||||||+++.|++.+ |..++-+ ..+.+++.|+.+++++.++...+.....-
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~------~eP~~t~~g~~ir~~l~~~~~~~~~~~~lLf~a~R~~~~~ 75 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT------REPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLV 75 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE------ESSTTCHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHCCCCEEEe------eCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999998 4444432 23567899999999998887766543322
Q ss_pred -HHHHHHHhcccCCcceEEEeCCC----------CC--HHHHHHHHh----hCCCceEEEEccCHHHHHHHHhcCCcCCC
Q 024067 130 -LLSKRLEEGYYRGESGFILDGIP----------RT--RIQAEILDQ----IVDVDLVINFKSIEDQLVKRNLESEAFSP 192 (273)
Q Consensus 130 -ll~~~l~~~~~~~~~g~IlDg~P----------~~--~~qa~~l~~----~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~ 192 (273)
.+...+.. +..+|.|.|. +. ......+.. ...||++|+|++|+++.++|+.+|+...
T Consensus 76 ~~i~p~l~~-----g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PDl~i~Ld~~~e~~~~Ri~~r~~~~- 149 (205)
T 4hlc_A 76 LKVIPALKE-----GKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQ- 149 (205)
T ss_dssp HTHHHHHHT-----TCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHC------
T ss_pred HHHHHHHHc-----CCEEEecCcccchHHHHhccccchHHHHHHHHHHHhcCCCCCEEeeeCCCHHHHHHHHHhcCCcc-
Confidence 22223332 3556777543 22 222233332 2479999999999999999998876321
Q ss_pred cccccccCCCCCCCCCcHHHHHHHH-HHHHHhhHHHHHHHHh-cCcEEEEeCCCChhHHHHHHHHHHHhc
Q 024067 193 HKEFLRLGGARFSAADAASAWKEKF-RIYAEQGKSLEDYYSK-QRKLLNFQVAAAPGETWQGLLSALHLQ 260 (273)
Q Consensus 193 ~~~~y~~~~~~~~~~d~~e~~~~rl-~~y~~~~~~l~~~y~~-~~~~~~id~~~s~~ev~~~I~~~l~~~ 260 (273)
.+.+.....+.+++ +.|.+. +++ .+.++.||+++++++|.++|.+.|...
T Consensus 150 -----------dr~e~~~~~f~~~v~~~Y~~l-------~~~~~~~~~~IDa~~~~e~V~~~i~~~i~~~ 201 (205)
T 4hlc_A 150 -----------NRLDQEDLKFHEKVIEGYQEI-------IHNESQRFKSVNADQPLENVVEDTYQTIIKY 201 (205)
T ss_dssp -------------CCHHHHHHHHHHHHHHHHH-------HHSCCTTEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred -----------cchhccCHHHHHHHHHHHHHH-------HHhCCCCEEEEECCCCHHHHHHHHHHHHHHH
Confidence 01111112233333 233321 222 246999999999999999998888653
No 28
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=99.72 E-value=5.1e-16 Score=129.01 Aligned_cols=166 Identities=14% Similarity=0.121 Sum_probs=106.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHh---CCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHH-------HHHH
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLL---EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFA-------LLSK 133 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~---g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~-------ll~~ 133 (273)
+.|+|+|+|||||||+++.|++.+ |++++.+.+ +.+++.|+.+++++..+...+.....- .+..
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 74 (197)
T 2z0h_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE------PGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTE 74 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES------SCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC------CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999 999987642 556788999999988776655432211 1122
Q ss_pred HHHhcccCCcceEEEe----------CCCCCHHH--HHHHH----hhCCCceEEEEccCHHHHHHHHhcCCcCCCccccc
Q 024067 134 RLEEGYYRGESGFILD----------GIPRTRIQ--AEILD----QIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFL 197 (273)
Q Consensus 134 ~l~~~~~~~~~g~IlD----------g~P~~~~q--a~~l~----~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y 197 (273)
+... ...+..+|+| |+++.... ...+. ....||++|+|++|++++.+|+..|..
T Consensus 75 -i~~~-l~~g~~vi~dr~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~-------- 144 (197)
T 2z0h_A 75 -IKQY-LSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGELNR-------- 144 (197)
T ss_dssp -HTTC-----CEEEEESCHHHHHHHTTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC---CC--------
T ss_pred -HHHH-HhCCCEEEECCChhHHHHHHHhccCCCHHHHHHHHHHhcCCCCCCEEEEEeCCHHHHHHHHhccCc--------
Confidence 2221 1224567788 44544322 22221 123699999999999999999998831
Q ss_pred ccCCCCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhc
Q 024067 198 RLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQ 260 (273)
Q Consensus 198 ~~~~~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~ 260 (273)
.++. +.+++....|.+. ...| ...++.||++++++++.++|...+...
T Consensus 145 --------~~~~-~~~~~~~~~~~~~----~~~~--~~~~~~Id~~~~~e~~~~~i~~~l~~~ 192 (197)
T 2z0h_A 145 --------FEKR-EFLERVREGYLVL----AREH--PERIVVLDGKRSIEEIHRDVVREVKRR 192 (197)
T ss_dssp --------CCCH-HHHHHHHHHHHHH----HHHC--TTTEEEEETTSCHHHHHHHHHHHTTCC
T ss_pred --------ccHH-HHHHHHHHHHHHH----HHhC--CCCEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 1222 3333333445432 2222 235788999999999999999998654
No 29
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=99.71 E-value=2.8e-15 Score=127.64 Aligned_cols=169 Identities=14% Similarity=0.114 Sum_probs=111.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC---CCeechhHHHHHHccCCChHHHHHHHHHHCCC--CCCHHHH---------
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLE---VPHISMGSLVRQELSPRSALYKQIANAVNEGK--LVPEDVI--------- 127 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g---~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~--~~~~~~~--------- 127 (273)
+++.|+|.|++||||||+++.|++.++ +.++.+ ..+.++++|+.+++++.++. .+.....
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~------~~p~~~~~g~~i~~~l~~~~~~~~~~~~~~llf~a~R~ 78 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT------REPGGTPLAERIRELLLAPSDEPMAADTELLLMFAARA 78 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE------ESSCSSHHHHHHHHHHHSCCSSCCCHHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc------cCCCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999999985 444433 22467899999999998874 2333221
Q ss_pred ---HHHHHHHHHhcccCCcceEEEeCCCC------------CHHHHHHHHh----hCCCceEEEEccCHHHHHHHHhcCC
Q 024067 128 ---FALLSKRLEEGYYRGESGFILDGIPR------------TRIQAEILDQ----IVDVDLVINFKSIEDQLVKRNLESE 188 (273)
Q Consensus 128 ---~~ll~~~l~~~~~~~~~g~IlDg~P~------------~~~qa~~l~~----~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (273)
.+.+...+.. +..+|.|.|.. .......+.. ...||++|+|++|++++++|+..|.
T Consensus 79 ~~~~~~i~p~l~~-----g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~~~~~~~PDlvi~Ld~~~e~~~~Ri~~R~ 153 (213)
T 4edh_A 79 QHLAGVIRPALAR-----GAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIGLARAAARG 153 (213)
T ss_dssp HHHHHTHHHHHHT-----TCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHCCCS
T ss_pred HHHHHHHHHHHHC-----CCEEEECccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence 1122223332 45678885421 2233333333 2579999999999999999999885
Q ss_pred cCCCcccccccCCCCCCCCC-cHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhc
Q 024067 189 AFSPHKEFLRLGGARFSAAD-AASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQ 260 (273)
Q Consensus 189 ~~~~~~~~y~~~~~~~~~~d-~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~ 260 (273)
... +.+. ..+.+++..+.|.+. .+.| .+.++.||+++++++|.++|.+.|...
T Consensus 154 ~~d-------------r~E~~~~~~~~rv~~~y~~l----~~~~--~~~~~vIDa~~s~eeV~~~I~~~l~~~ 207 (213)
T 4edh_A 154 RLD-------------RFEQEDRRFFEAVRQTYLQR----AAQA--PERYQVLDAGLPLAEVQAGLDRLLPNL 207 (213)
T ss_dssp SCC-------------TTTTSCHHHHHHHHHHHHHH----HHHC--TTTEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred CcC-------------cccccHHHHHHHHHHHHHHH----HHHC--CCcEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 210 1122 233333333455432 2223 246999999999999999999988754
No 30
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=99.71 E-value=1.5e-16 Score=136.80 Aligned_cols=173 Identities=13% Similarity=0.092 Sum_probs=109.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCeechh---HHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHH--------
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMG---SLVRQELSPRSALYKQIANAVNEGKLVPEDVIFA-------- 129 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~---dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~-------- 129 (273)
.+++.|+|.|++||||||+++.|++.++..+++++ .+.+ .+.++++|+.|++++.++...+.....-
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~r--ep~~t~~g~~ir~~l~~~~~~~~~~~llf~a~R~~~ 100 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTR--EPGGTRLGETLREILLNQPMDLETEALLMFAGRREH 100 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEE--SSSSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeec--CCCCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999854322221 0122 2467899999999998886554433222
Q ss_pred ---HHHHHHHhcccCCcceEEEeCCCCC------------HHHHHHHHh----hCCCceEEEEccCHHHHHHHHhcCCcC
Q 024067 130 ---LLSKRLEEGYYRGESGFILDGIPRT------------RIQAEILDQ----IVDVDLVINFKSIEDQLVKRNLESEAF 190 (273)
Q Consensus 130 ---ll~~~l~~~~~~~~~g~IlDg~P~~------------~~qa~~l~~----~~~~d~vI~L~~~~e~l~~Rl~~R~~~ 190 (273)
.+...+.. +..+|.|.|..+ ......+.. ...||++|+|++|++++++|+..|...
T Consensus 101 ~~~~i~p~l~~-----g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~~~~~~~~PDl~I~Ldv~~e~~~~Ri~~R~~~ 175 (227)
T 3v9p_A 101 LALVIEPALAR-----GDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVPPQIASARRGAVRMP 175 (227)
T ss_dssp HHHTHHHHHHT-----TCEEEEECCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCSSCGGGTTTCCCCC
T ss_pred HHHHHHHHHHc-----CCEEEEeccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccCc
Confidence 22222322 456888966432 222233332 247999999999999999999888521
Q ss_pred CCcccccccCCCCCCCCCcHHHHHHHH-HHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHh
Q 024067 191 SPHKEFLRLGGARFSAADAASAWKEKF-RIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHL 259 (273)
Q Consensus 191 ~~~~~~y~~~~~~~~~~d~~e~~~~rl-~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~ 259 (273)
. +.+.....+.+++ +.|.+. .+.| .+.++.||+++++++|.++|.+.|..
T Consensus 176 d-------------r~E~~~~ef~~rv~~~Y~~l----a~~~--~~~~~vIDa~~s~eeV~~~I~~~l~~ 226 (227)
T 3v9p_A 176 D-------------KFESESDAFFARTRAEYLRR----AQEA--PHRFVIVDSSEPIAQIRKQLEGVLAA 226 (227)
T ss_dssp ----------------CCHHHHHHHHHHHHHHHH----HHHC--TTTEEEEETTSCHHHHHHHHHHHHHH
T ss_pred c-------------chhhhhHHHHHHHHHHHHHH----HHHh--cCCEEEEeCCCCHHHHHHHHHHHHHh
Confidence 0 1122222333443 445432 2222 24699999999999999999998864
No 31
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.71 E-value=3e-16 Score=131.63 Aligned_cols=161 Identities=15% Similarity=0.132 Sum_probs=110.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHH---HHHHHHHhc
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFA---LLSKRLEEG 138 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~---ll~~~l~~~ 138 (273)
++++|+|+|+|||||||+++.|++.+|+.+|+.|++..... ......|....+..... .+...+
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~~~~~~----------~~~~~~g~~~~~~~~~~~~~~l~~~~--- 83 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPEN----------IRKMSEGIPLTDDDRWPWLAAIGERL--- 83 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGGCCHHH----------HHHHHHTCCCCHHHHHHHHHHHHHHH---
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcCcchhh----------HHHHhcCCCCCchhhHHHHHHHHHHH---
Confidence 46789999999999999999999999999999988753210 11122344444432222 222322
Q ss_pred ccCCcceEEEeCCCCCHHHHHHHHhhC-CCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHH
Q 024067 139 YYRGESGFILDGIPRTRIQAEILDQIV-DVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKF 217 (273)
Q Consensus 139 ~~~~~~g~IlDg~P~~~~qa~~l~~~~-~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl 217 (273)
..+.++|+|+.+....+.+.+.... .++.+|+|+++.+++.+|+.+|..+. ...+.+..++
T Consensus 84 --~~~~~vivd~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~~~~----------------~~~~~~~~~~ 145 (202)
T 3t61_A 84 --ASREPVVVSCSALKRSYRDKLRESAPGGLAFVFLHGSESVLAERMHHRTGHF----------------MPSSLLQTQL 145 (202)
T ss_dssp --TSSSCCEEECCCCSHHHHHHHHHTSTTCCEEEEEECCHHHHHHHHHHHHSSC----------------CCHHHHHHHH
T ss_pred --hcCCCEEEECCCCCHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHHhhccC----------------CCHHHHHHHH
Confidence 2357899999888877777776543 45799999999999999999886321 1133444443
Q ss_pred HHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhcC
Q 024067 218 RIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQH 261 (273)
Q Consensus 218 ~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~~ 261 (273)
..+. + .|. ....+.||++.+++++.++|...|....
T Consensus 146 ~~~~----~---~~~-~~~~~~Id~~~~~~e~~~~I~~~l~~~~ 181 (202)
T 3t61_A 146 ETLE----D---PRG-EVRTVAVDVAQPLAEIVREALAGLARLA 181 (202)
T ss_dssp HHCC----C---CTT-STTEEEEESSSCHHHHHHHHHHHHHHHH
T ss_pred HhcC----C---CCC-CCCeEEEeCCCCHHHHHHHHHHHHHHhh
Confidence 3332 1 121 2246789999999999999999987653
No 32
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=99.70 E-value=4.6e-17 Score=137.02 Aligned_cols=171 Identities=11% Similarity=0.086 Sum_probs=114.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHH-------H
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSK-------R 134 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~-------~ 134 (273)
+++.|+|+|+|||||||+++.|+++++.+++++ +++++ ...+++.++.+++++..+..++......+... .
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~-~~~~~-~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV-KHLYF-PNRETGIGQIISKYLKMENSMSNETIHLLFSANRWEHMNE 86 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE-EEEES-SCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE-EEEec-CCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999888887 44442 23357888889998877776776543332221 1
Q ss_pred HHhcccCCcceEEEeCCCCCH--HHH-------HHHHh----hCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCC
Q 024067 135 LEEGYYRGESGFILDGIPRTR--IQA-------EILDQ----IVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGG 201 (273)
Q Consensus 135 l~~~~~~~~~g~IlDg~P~~~--~qa-------~~l~~----~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~ 201 (273)
+... ...+..+|+|+++.+. .|. ..+.. ...||++|+|++|++++.+|+..|..
T Consensus 87 i~~~-l~~~~~vi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~~------------ 153 (212)
T 2wwf_A 87 IKSL-LLKGIWVVCDRYAYSGVAYSSGALNLNKTWCMNPDQGLIKPDVVFYLNVPPNYAQNRSDYGEE------------ 153 (212)
T ss_dssp HHHH-HHHTCEEEEECCHHHHHHHHHHHSCCCHHHHHGGGTTSBCCSEEEEEECCTTGGGGSTTTTSS------------
T ss_pred HHHH-HhCCCEEEEecchhhHHHHHHhccCCCHHHHHHHhhCCCCCCEEEEEeCCHHHHHHhhccCcc------------
Confidence 1110 0124679999998641 221 22221 13689999999999999999865421
Q ss_pred CCCCCCCcHHHHHHHHH-HHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhc
Q 024067 202 ARFSAADAASAWKEKFR-IYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQ 260 (273)
Q Consensus 202 ~~~~~~d~~e~~~~rl~-~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~ 260 (273)
+.++ +.+.+++. .|.+... ...++.||+++++++++++|.+.+...
T Consensus 154 ---r~~~--~~~~~~~~~~~~~~~~--------~~~~~~Id~~~~~~~~~~~i~~~l~~~ 200 (212)
T 2wwf_A 154 ---IYEK--VETQKKIYETYKHFAH--------EDYWINIDATRKIEDIHNDIVKEVTKI 200 (212)
T ss_dssp ---TTCS--HHHHHHHHHHGGGGTT--------CTTEEEEECSSCHHHHHHHHHHHHTTS
T ss_pred ---cccH--HHHHHHHHHHHHHHhc--------cCCEEEEECCCCHHHHHHHHHHHHHHh
Confidence 1121 24445553 2322111 234788999999999999999999765
No 33
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=99.69 E-value=1.7e-16 Score=128.84 Aligned_cols=162 Identities=17% Similarity=0.204 Sum_probs=99.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHhcccCC
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN-EGKLVPEDVIFALLSKRLEEGYYRG 142 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~-~g~~~~~~~~~~ll~~~l~~~~~~~ 142 (273)
++|+|+|+|||||||+++.|++++|++++++|++.++.. |..+.+++. .|.....++...++ ..+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~------g~~~~~~~~~~~~~~~~~~~~~~l-~~l~~----- 68 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEEVQKRE------GLSIPQIFEKKGEAYFRKLEFEVL-KDLSE----- 68 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHH------TSCHHHHHHHSCHHHHHHHHHHHH-HHHTT-----
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEECcHHHHHHc------CCCHHHHHHHhChHHHHHHHHHHH-HHHhc-----
Confidence 479999999999999999999999999999999987643 222333332 22211111112222 22221
Q ss_pred cceEEEe-C--CCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHHH
Q 024067 143 ESGFILD-G--IPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRI 219 (273)
Q Consensus 143 ~~g~IlD-g--~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~ 219 (273)
...+|++ | .+........|. .++++|+|++|++++++|+..|...+ . ..+..+.+++++..
T Consensus 69 ~~~~Vi~~g~~~~~~~~~~~~l~---~~~~~i~l~~~~e~~~~R~~~r~~r~--~-----------~~~~~~~i~~~~~~ 132 (168)
T 2pt5_A 69 KENVVISTGGGLGANEEALNFMK---SRGTTVFIDIPFEVFLERCKDSKERP--L-----------LKRPLDEIKNLFEE 132 (168)
T ss_dssp SSSEEEECCHHHHTCHHHHHHHH---TTSEEEEEECCHHHHHHHCBCTTCCB--G-----------GGSCGGGTHHHHHH
T ss_pred cCCeEEECCCCEeCCHHHHHHHH---cCCEEEEEECCHHHHHHHHhCCCCCC--C-----------CcchHHHHHHHHHH
Confidence 3456665 4 223333333443 47899999999999999998874211 0 00112223333321
Q ss_pred HHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhcCC
Q 024067 220 YAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQHM 262 (273)
Q Consensus 220 y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~~~ 262 (273)
...+|.+ ..++. +++.+++++.++|.+.+....+
T Consensus 133 -------~~~~~~~-~~~~i-~~~~~~~~~~~~i~~~l~~~~~ 166 (168)
T 2pt5_A 133 -------RRKIYSK-ADIKV-KGEKPPEEVVKEILLSLEGNAL 166 (168)
T ss_dssp -------HHHHHTT-SSEEE-ECSSCHHHHHHHHHHHHHTSCC
T ss_pred -------HHHHHHh-CCEEE-CCCCCHHHHHHHHHHHHHhccC
Confidence 1234554 34555 7778999999999999986543
No 34
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=99.68 E-value=7.5e-16 Score=126.00 Aligned_cols=162 Identities=16% Similarity=0.078 Sum_probs=92.3
Q ss_pred CeEEEEEcCCCCChhHHHHHHHH-HhCCCeechhHHHHHHccCCCh-----HHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSK-LLEVPHISMGSLVRQELSPRSA-----LYKQIANAVNEGKLVPEDVIFALLSKRLE 136 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~-~~g~~~is~~dllr~~~~~~~~-----~g~~i~~~l~~g~~~~~~~~~~ll~~~l~ 136 (273)
+..|+|+|+|||||||+++.|++ .+|+.+|++|. +++.....+. +...-.. ...++....+...+.
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~d~-~r~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~ 73 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDD-YRQSIMAHEERDEYKYTKKKEG-------IVTGMQFDTAKSILY 73 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHH-HHHHHTTSCCGGGCCCCHHHHH-------HHHHHHHHHHHHHHT
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCcEEecHHH-HHHHhhCCCccchhhhchhhhh-------HHHHHHHHHHHHHHh
Confidence 46899999999999999999999 68999999854 5544433211 1000000 012233444555552
Q ss_pred hcccCCcceEEEeCCCCCHHHHHHHHhh----CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHH
Q 024067 137 EGYYRGESGFILDGIPRTRIQAEILDQI----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASA 212 (273)
Q Consensus 137 ~~~~~~~~g~IlDg~P~~~~qa~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~ 212 (273)
.. ..+.++|+|+++.+..+.+.|... ..+..+|+|+||.+++.+|+..|..+ ..+++.
T Consensus 74 ~~--~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~----------------~~~~~~ 135 (181)
T 1ly1_A 74 GG--DSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTK----------------AVPIDV 135 (181)
T ss_dssp SC--SSCCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCGGG----------------CCCHHH
T ss_pred hc--cCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHhccccC----------------CCCHHH
Confidence 10 235789999999988777666532 33557999999999999999988632 224677
Q ss_pred HHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhc
Q 024067 213 WKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQ 260 (273)
Q Consensus 213 ~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~ 260 (273)
+++++..|.... .+ . .+.+|++. ++++...|...|...
T Consensus 136 i~~~~~~~~~~~-----~~---~-~~~id~~~-~~~v~~~i~~~l~~~ 173 (181)
T 1ly1_A 136 LRSMYKSMREYL-----GL---P-VYNGTPGK-PKAVIFDVDGTLAKM 173 (181)
T ss_dssp HHHHHHHHHHHH-----TC---C-CC----------------------
T ss_pred HHHHHHHhhccC-----CC---C-ccccCCCC-Cceeeehhhhhhhcc
Confidence 888888886541 11 1 12377665 488888888877663
No 35
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=99.68 E-value=1.1e-15 Score=127.79 Aligned_cols=163 Identities=13% Similarity=0.085 Sum_probs=106.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh-CCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHH---------
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL-EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALL--------- 131 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~-g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll--------- 131 (273)
+++.|+|+|+|||||||+++.|++++ |+++++++. ....++.|+.+++++.++..+..... .++
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~-----~~~~~~~g~~i~~~~~~~~~~~~~~~-~~l~~~~r~~~~ 76 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNF-----PQRSTVTGKMIDDYLTRKKTYNDHIV-NLLFCANRWEFA 76 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEES-----SCTTSHHHHHHHHHHTSSCCCCHHHH-HHHHHHHHHTTH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEec-----CCCCCcHHHHHHHHHhcCCCCCHHHH-HHHHHHHHHHHH
Confidence 57899999999999999999999999 688887532 11246788889999877655544322 221
Q ss_pred ---HHHHHhcccCCcceEEEeCCCCCHH--H------HHHH---Hh-hCCCceEEEEccCHHHHHHHHhcCCcCCCcccc
Q 024067 132 ---SKRLEEGYYRGESGFILDGIPRTRI--Q------AEIL---DQ-IVDVDLVINFKSIEDQLVKRNLESEAFSPHKEF 196 (273)
Q Consensus 132 ---~~~l~~~~~~~~~g~IlDg~P~~~~--q------a~~l---~~-~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~ 196 (273)
...+. .+..+|+|+||.+.. | .+.+ .. ...||++|+|++|++++.+ +|..+.
T Consensus 77 ~~i~~~l~-----~~~~vi~Dr~~~s~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~---~R~~d~----- 143 (204)
T 2v54_A 77 SFIQEQLE-----QGITLIVDRYAFSGVAYAAAKGASMTLSKSYESGLPKPDLVIFLESGSKEINR---NVGEEI----- 143 (204)
T ss_dssp HHHHHHHH-----TTCEEEEESCHHHHHHHHHHTTCCHHHHHHHHTTSBCCSEEEEECCCHHHHTT---CCSSST-----
T ss_pred HHHHHHHH-----CCCEEEEECchhhHHHHHHccCCCHHHHHHHhcCCCCCCEEEEEeCCHHHHHh---hcCccc-----
Confidence 12222 246789999886421 1 1222 21 1368999999999999877 343111
Q ss_pred cccCCCCCCCCCcHHHHHHHHHH-HHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhc
Q 024067 197 LRLGGARFSAADAASAWKEKFRI-YAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQ 260 (273)
Q Consensus 197 y~~~~~~~~~~d~~e~~~~rl~~-y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~ 260 (273)
.+ . +.+.+|+.. |.+.. ..| ...++.||+++++++++++|.+.+...
T Consensus 144 ---------~e-~-~~~~~rl~~~y~~~~----~~~--~~~~~~Id~~~~~~~v~~~i~~~l~~~ 191 (204)
T 2v54_A 144 ---------YE-D-VTFQQKVLQEYKKMI----EEG--DIHWQIISSEFEEDVKKELIKNIVIEA 191 (204)
T ss_dssp ---------TC-C-SHHHHHHHHHHHHHH----TTC--SSCEEEECTTSCHHHHHHHHHHHHHHH
T ss_pred ---------cc-H-HHHHHHHHHHHHHHH----HhC--CCcEEEEECCCCHHHHHHHHHHHHHHH
Confidence 01 1 144555543 44321 111 235789999999999999999988754
No 36
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=99.68 E-value=4.8e-15 Score=126.24 Aligned_cols=171 Identities=12% Similarity=0.115 Sum_probs=109.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCee-chhHHHHHHccCCChHHHHHHHHHHCC-----CCCCHHHH--------
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHI-SMGSLVRQELSPRSALYKQIANAVNEG-----KLVPEDVI-------- 127 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~i-s~~dllr~~~~~~~~~g~~i~~~l~~g-----~~~~~~~~-------- 127 (273)
+++.|+|.|++||||||+++.|++.+.-..+ ++ .+. ..+.++++|+.|++++..+ ..+.....
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v-~~~--rep~~t~~g~~ir~~l~~~~~~~~~~~~~~~e~lL~~A~R 78 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDM-VFT--REPGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAAR 78 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCE-EEE--ESSCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcc-eee--eCCCCCHHHHHHHHHHhcccccccccCChHHHHHHHHHHH
Confidence 4789999999999999999999999843333 11 112 2356789999999999732 23333221
Q ss_pred ----HHHHHHHHHhcccCCcceEEEeCCCC------------CHHHHHHHHhh----CCCceEEEEccCHHHHHHHHhcC
Q 024067 128 ----FALLSKRLEEGYYRGESGFILDGIPR------------TRIQAEILDQI----VDVDLVINFKSIEDQLVKRNLES 187 (273)
Q Consensus 128 ----~~ll~~~l~~~~~~~~~g~IlDg~P~------------~~~qa~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R 187 (273)
...+...+.. +..+|.|.|.. .......++.+ ..||++|+|++|++++++|+.+|
T Consensus 79 ~~~~~~~i~paL~~-----g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~~~~~~~PDl~i~Ldv~~e~~~~Ri~~R 153 (213)
T 4tmk_A 79 VQLVETVIKPALAN-----GTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARAR 153 (213)
T ss_dssp HHHHHHTHHHHHHT-----TCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-----CCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhc
Confidence 1233344443 45678885422 12233333322 47999999999999999999887
Q ss_pred CcCCCcccccccCCCCCCCC-CcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhc
Q 024067 188 EAFSPHKEFLRLGGARFSAA-DAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQ 260 (273)
Q Consensus 188 ~~~~~~~~~y~~~~~~~~~~-d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~ 260 (273)
.... +.+ .+.+.+++-.+.|.+.. + ..+.++.||+++++++|.++|.+.|...
T Consensus 154 ~~~d-------------r~E~~~~~f~~rv~~~y~~la----~---~~~~~~vIDa~~s~eeV~~~I~~~l~~~ 207 (213)
T 4tmk_A 154 GELD-------------RIEQESFDFFNRTRARYLELA----A---QDKSIHTIDATQPLEAVMDAIRTTVTHW 207 (213)
T ss_dssp SSCC-------------TTTTSCHHHHHHHHHHHHHHH----H---TCTTEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred CCcc-------------chhhhHHHHHHHHHHHHHHHH----H---HCCcEEEECCCCCHHHHHHHHHHHHHHH
Confidence 5210 112 12333333333454322 1 2256899999999999999999998764
No 37
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=99.68 E-value=9.7e-17 Score=132.58 Aligned_cols=170 Identities=16% Similarity=0.154 Sum_probs=96.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhC-----CCeechhHHHHHHccCCChHHHHHHHHHHCCCCCC--HHHHHHHHHHHH
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP--EDVIFALLSKRL 135 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g-----~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~--~~~~~~ll~~~l 135 (273)
++.|+|+|+|||||||+++.|+++++ ++++++++++++........ ....++ +...+ ...+...+.+.+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~i 78 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLV-SDRDQM---RKMDPETQKRIQKMAGRKI 78 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSC-SSGGGG---SSCCHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHHHHhccCCC-CCHHHH---hcCCHHHHHHHHHHHHHHH
Confidence 57899999999999999999999998 99999999988643211000 000000 01111 112222232333
Q ss_pred HhcccCCcceEEEeCCCCCHHHH--------HHHHhhCCCceEEEEccCHHHHHH-HHhc--CCcCCCcccccccCCCCC
Q 024067 136 EEGYYRGESGFILDGIPRTRIQA--------EILDQIVDVDLVINFKSIEDQLVK-RNLE--SEAFSPHKEFLRLGGARF 204 (273)
Q Consensus 136 ~~~~~~~~~g~IlDg~P~~~~qa--------~~l~~~~~~d~vI~L~~~~e~l~~-Rl~~--R~~~~~~~~~y~~~~~~~ 204 (273)
... ....++|+||++....+. ..+.. ..||++|+|++|++++++ |+.. |...
T Consensus 79 ~~~--~~~~~viid~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~l~~~~~~~~~rRl~~~~R~r~-------------- 141 (192)
T 1kht_A 79 AEM--AKESPVAVDTHSTVSTPKGYLPGLPSWVLNE-LNPDLIIVVETTGDEILMRRMSDETRVRD-------------- 141 (192)
T ss_dssp HHH--HTTSCEEEECCSEEEETTEEEESSCHHHHHH-HCCSEEEEEECCHHHHHHHHHTSSSCSSS--------------
T ss_pred Hhh--ccCCeEEEccceeccccccccccCcHHHHhc-cCCCEEEEEeCCHHHHHHHHhhhcccCCC--------------
Confidence 221 124579999976421111 22222 257899999999999996 8876 5421
Q ss_pred CCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEE-eCCCChhHHHHHHHHHH
Q 024067 205 SAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNF-QVAAAPGETWQGLLSAL 257 (273)
Q Consensus 205 ~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~i-d~~~s~~ev~~~I~~~l 257 (273)
....+.+..+...++. .......|.. ..++.+ |.++++++++++|.+.+
T Consensus 142 --~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~i~~~~~~~e~~~~~i~~~i 191 (192)
T 1kht_A 142 --LDTASTIEQHQFMNRC-AAMSYGVLTG-ATVKIVQNRNGLLDQAVEELTNVL 191 (192)
T ss_dssp --CCCHHHHHHHHHHHHH-HHHHHHHHHC-CEEEEEECCTTCHHHHHHHHHHHH
T ss_pred --cCCHHHHHHHHHHHHH-HHHHHHHhcC-CcEEEEeCCCCCHHHHHHHHHHHh
Confidence 1223333333222222 2222233433 234555 44456999999998876
No 38
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=99.68 E-value=1.1e-15 Score=132.08 Aligned_cols=173 Identities=14% Similarity=0.073 Sum_probs=107.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCC---CCCCHHHHH----------
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEG---KLVPEDVIF---------- 128 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g---~~~~~~~~~---------- 128 (273)
+++.|+|.|++||||||+++.|++.++...+++..+++ .+.++++|+.+++++..+ ..+...+..
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~r--ep~~t~~g~~ir~~l~~~~~~~~~~~~~e~lLf~A~R~~~ 103 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTR--EPGGTLLAEKLRALVKEEHPGEELQDITELLLVYAARVQL 103 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEE--SSCSSHHHHHHHHHHHSCCTTSCCCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeec--CCCCCHHHHHHHHHHhhCCCcccCCHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999655554222333 246789999999998632 223332221
Q ss_pred --HHHHHHHHhcccCCcceEEEeCC----------CCC--HHHHHHHHh----hCCCceEEEEccCHHHHHHHHhcCCcC
Q 024067 129 --ALLSKRLEEGYYRGESGFILDGI----------PRT--RIQAEILDQ----IVDVDLVINFKSIEDQLVKRNLESEAF 190 (273)
Q Consensus 129 --~ll~~~l~~~~~~~~~g~IlDg~----------P~~--~~qa~~l~~----~~~~d~vI~L~~~~e~l~~Rl~~R~~~ 190 (273)
+.+...+.. +..+|.|.| ++. ......+.. ...||++|+|++|++++++|+.+|...
T Consensus 104 ~~~~I~paL~~-----g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~~~~~~~PDlvi~Ldv~~e~~~~Ri~~R~~~ 178 (236)
T 3lv8_A 104 VENVIKPALAR-----GEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTALGDFKPDLTLYLDIDPKLGLERARGRGEL 178 (236)
T ss_dssp HHHTHHHHHHT-----TCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHC-----CC
T ss_pred HHHHHHHHHHc-----CCEEEEeeecchHHhhhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCc
Confidence 222333332 466788854 222 222223332 247999999999999999999888521
Q ss_pred CCcccccccCCCCCCCCCcHHHHHHHH-HHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhcC
Q 024067 191 SPHKEFLRLGGARFSAADAASAWKEKF-RIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQH 261 (273)
Q Consensus 191 ~~~~~~y~~~~~~~~~~d~~e~~~~rl-~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~~ 261 (273)
. +.+.....+.+++ +.|.+. +++...++.||+++++++|.++|.+.|....
T Consensus 179 d-------------r~E~~~~~~~~rv~~~y~~l-------a~~~~~~~vIDa~~sieeV~~~I~~~l~~~l 230 (236)
T 3lv8_A 179 D-------------RIEKMDISFFERARERYLEL-------ANSDDSVVMIDAAQSIEQVTADIRRALQDWL 230 (236)
T ss_dssp C-------------TTTTSCHHHHHHHHHHHHHH-------HHHCTTEEEEETTSCHHHHHHHHHHHHHHHH
T ss_pred c-------------hhhhhHHHHHHHHHHHHHHH-------HHHCCCEEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 1 1111112344444 344332 2222238999999999999999999987654
No 39
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=99.68 E-value=2.3e-16 Score=130.23 Aligned_cols=162 Identities=20% Similarity=0.245 Sum_probs=97.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHhcccCC
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAV-NEGKLVPEDVIFALLSKRLEEGYYRG 142 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l-~~g~~~~~~~~~~ll~~~l~~~~~~~ 142 (273)
++|+|+|+|||||||+|+.|++++|+++|++|+++++... . + +.+++ ..|.....+....++...+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~~~~~~~g-~-~----~~~~~~~~g~~~~~~~~~~~~~~~~~~----- 71 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTG-R-S----IADIFATDGEQEFRRIEEDVVRAALAD----- 71 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHS-S-C----HHHHHHHHCHHHHHHHHHHHHHHHHHH-----
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCchHHHHHcC-C-C----HHHHHHHhChHHHHHHHHHHHHHHHhc-----
Confidence 5699999999999999999999999999999998886532 1 1 22222 233322333333444433322
Q ss_pred cceEEE-eCC--CCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHHH
Q 024067 143 ESGFIL-DGI--PRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRI 219 (273)
Q Consensus 143 ~~g~Il-Dg~--P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~ 219 (273)
..+|+ +|. .........|. .+.+|+|+||.+++.+|+..|...+. ...++.. +++..
T Consensus 72 -~~~vi~~g~~~v~~~~~~~~l~----~~~vV~L~~~~e~~~~Rl~~r~~r~~-----------~~~~~~~----~~i~~ 131 (184)
T 2iyv_A 72 -HDGVLSLGGGAVTSPGVRAALA----GHTVVYLEISAAEGVRRTGGNTVRPL-----------LAGPDRA----EKYRA 131 (184)
T ss_dssp -CCSEEECCTTGGGSHHHHHHHT----TSCEEEEECCHHHHHHHTTCCCCCSS-----------TTSCCHH----HHHHH
T ss_pred -CCeEEecCCcEEcCHHHHHHHc----CCeEEEEeCCHHHHHHHHhCCCCCCC-----------ccCCCHH----HHHHH
Confidence 23333 332 22222223332 56899999999999999988752110 0111222 23333
Q ss_pred HHHhhHHHHHHHHhcCcEEEEeCC-CChhHHHHHHHHHHHhc
Q 024067 220 YAEQGKSLEDYYSKQRKLLNFQVA-AAPGETWQGLLSALHLQ 260 (273)
Q Consensus 220 y~~~~~~l~~~y~~~~~~~~id~~-~s~~ev~~~I~~~l~~~ 260 (273)
+... ...+|.... .+.||++ .++++++++|.+.+...
T Consensus 132 ~~~~---r~~~~~~~~-~~~Idt~~~s~ee~~~~I~~~l~~~ 169 (184)
T 2iyv_A 132 LMAK---RAPLYRRVA-TMRVDTNRRNPGAVVRHILSRLQVP 169 (184)
T ss_dssp HHHH---HHHHHHHHC-SEEEECSSSCHHHHHHHHHTTSCCC
T ss_pred HHHH---HHHHHhccC-CEEEECCCCCHHHHHHHHHHHHhhc
Confidence 3221 223554432 3678988 79999999998887543
No 40
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=99.67 E-value=4.5e-16 Score=126.83 Aligned_cols=162 Identities=12% Similarity=0.108 Sum_probs=98.4
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHhcccC
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN-EGKLVPEDVIFALLSKRLEEGYYR 141 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~-~g~~~~~~~~~~ll~~~l~~~~~~ 141 (273)
++.|+|+|+|||||||+++.|++++|++++++|+++++.. +.... +++. .|.....++...++. .+.
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d~~~~~~~--g~~~~----~~~~~~~~~~~~~~~~~~~~-~l~----- 69 (173)
T 1e6c_A 2 TEPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHTS--GMTVA----DVVAAEGWPGFRRRESEALQ-AVA----- 69 (173)
T ss_dssp CCCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHH--CSCHH----HHHHHHHHHHHHHHHHHHHH-HHC-----
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCcEEcccHHHHHHh--CCCHH----HHHHHcCHHHHHHHHHHHHH-Hhh-----
Confidence 4579999999999999999999999999999999887642 12222 1221 111111111112221 121
Q ss_pred CcceEEEe-C--CCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHh--cCCcCCCcccccccCCCCCCCCCcHHHHHHH
Q 024067 142 GESGFILD-G--IPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNL--ESEAFSPHKEFLRLGGARFSAADAASAWKEK 216 (273)
Q Consensus 142 ~~~g~IlD-g--~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~--~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~r 216 (273)
..++|++ | .+........|. .++++|+|++|++++.+|+. .|..+. +....+...++
T Consensus 70 -~~~~vi~~g~~~~~~~~~~~~l~---~~~~~i~l~~~~e~~~~R~~~~~r~~~r--------------~~~~~~~~~~~ 131 (173)
T 1e6c_A 70 -TPNRVVATGGGMVLLEQNRQFMR---AHGTVVYLFAPAEELALRLQASLQAHQR--------------PTLTGRPIAEE 131 (173)
T ss_dssp -CSSEEEECCTTGGGSHHHHHHHH---HHSEEEEEECCHHHHHHHHHHHHCSCCC--------------CCTTHHHHHHH
T ss_pred -cCCeEEECCCcEEeCHHHHHHHH---cCCeEEEEECCHHHHHHHHhhccCCCCC--------------CcCCCCCHHHH
Confidence 2456665 4 233333344443 26799999999999999998 773111 11112233445
Q ss_pred HHHHHHhhHHHHHHHHhcCcEEEEeCC-CChhHHHHHHHHHHHh
Q 024067 217 FRIYAEQGKSLEDYYSKQRKLLNFQVA-AAPGETWQGLLSALHL 259 (273)
Q Consensus 217 l~~y~~~~~~l~~~y~~~~~~~~id~~-~s~~ev~~~I~~~l~~ 259 (273)
+..+.... ..+|... .+.||++ .+++++.++|...+..
T Consensus 132 ~~~~~~~~---~~~~~~~--~~~Id~~~~~~~~~~~~i~~~l~~ 170 (173)
T 1e6c_A 132 MEAVLRER---EALYQDV--AHYVVDATQPPAAIVCELMQTMRL 170 (173)
T ss_dssp HHHHHHHH---HHHHHHH--CSEEEETTSCHHHHHHHHHHHTTC
T ss_pred HHHHHHHH---HHHHHhC--cEEEECCCCCHHHHHHHHHHHhcc
Confidence 55443332 2345543 3567887 7999999999988753
No 41
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=99.66 E-value=2.5e-16 Score=128.21 Aligned_cols=156 Identities=15% Similarity=0.122 Sum_probs=93.1
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHhcccC
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN-EGKLVPEDVIFALLSKRLEEGYYR 141 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~-~g~~~~~~~~~~ll~~~l~~~~~~ 141 (273)
+..|+|+|+|||||||+++.|++++|++++++|+++++.. |..+.+++. .|.....+....++...+.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~~~~~~~------g~~~~~~~~~~g~~~~~~~~~~~l~~~~~----- 75 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERV------GLSVREIFEELGEDNFRMFEKNLIDELKT----- 75 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH------TSCHHHHHHHTCHHHHHHHHHHHHHHHHT-----
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHh------CCCHHHHHHHhCHHHHHHHHHHHHHHHHh-----
Confidence 4578999999999999999999999999999999988653 122334443 2432222333333433222
Q ss_pred CcceE-EEe-C--CCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHH
Q 024067 142 GESGF-ILD-G--IPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKF 217 (273)
Q Consensus 142 ~~~g~-IlD-g--~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl 217 (273)
...+ |+. | ++.. .. +..++.+|+|++|++++++|+..|.... .+ ...+ .+.+++.+
T Consensus 76 -~~~~~Vi~~g~g~~~~-~~------l~~~~~vi~l~~~~e~~~~Rl~~r~~~~----------r~-~~~~-~~~~~~~~ 135 (168)
T 1zuh_A 76 -LKTPHVISTGGGIVMH-EN------LKGLGTTFYLKMDFETLIKRLNQKEREK----------RP-LLNN-LTQAKELF 135 (168)
T ss_dssp -CSSCCEEECCGGGGGC-GG------GTTSEEEEEEECCHHHHHHHHCC-------------------CCT-THHHHHHH
T ss_pred -cCCCEEEECCCCEech-hH------HhcCCEEEEEECCHHHHHHHHhccCCCC----------CC-CccC-HHHHHHHH
Confidence 1234 554 2 3333 21 2357899999999999999998873100 00 0011 22333333
Q ss_pred HHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHH
Q 024067 218 RIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSAL 257 (273)
Q Consensus 218 ~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l 257 (273)
.. ...+|.+.. .+.||+++++++++++|...|
T Consensus 136 ~~-------r~~~~~~~a-~~~Id~~~~~e~~~~~I~~~l 167 (168)
T 1zuh_A 136 EK-------RQALYEKNA-SFIIDARGGLNNSLKQVLQFI 167 (168)
T ss_dssp HH-------HHHHHHHTC-SEEEEGGGCHHHHHHHHHHC-
T ss_pred HH-------HHHHHHHHC-CEEEECCCCHHHHHHHHHHHh
Confidence 21 123455422 356788789999999998765
No 42
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=99.66 E-value=1.5e-15 Score=125.34 Aligned_cols=166 Identities=14% Similarity=0.088 Sum_probs=96.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHhcccC
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNE-GKLVPEDVIFALLSKRLEEGYYR 141 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~-g~~~~~~~~~~ll~~~l~~~~~~ 141 (273)
+..|+|+|+|||||||+++.|++++|++++++|+++++... . +. .+++.. |.....+....++......
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~~~~~~g-~-~~----~~~~~~~g~~~~~~~~~~~~~~~~~~---- 74 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEKRTG-A-DI----AWIFEMEGEAGFRRREREMIEALCKL---- 74 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHT-S-CH----HHHHHHHHHHHHHHHHHHHHHHHHHS----
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcC-C-Ch----hhHHHHhCHHHHHHHHHHHHHHHHhc----
Confidence 56899999999999999999999999999999998876432 1 12 222211 1111122333333332221
Q ss_pred CcceEEEeC--CCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHH--hcCCcCCCcccccccCCCCCCCCCcHHHHHHHH
Q 024067 142 GESGFILDG--IPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRN--LESEAFSPHKEFLRLGGARFSAADAASAWKEKF 217 (273)
Q Consensus 142 ~~~g~IlDg--~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl--~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl 217 (273)
...+|..| .+........|.. .+++|+|++|.+++.+|+ ..+...+ ....+...+++
T Consensus 75 -~~~vi~~gg~~~~~~~~~~~l~~---~~~vi~L~~~~e~l~~Rl~~~~~~~rp---------------~~~~~~~~~~l 135 (185)
T 3trf_A 75 -DNIILATGGGVVLDEKNRQQISE---TGVVIYLTASIDTQLKRIGQKGEMRRP---------------LFIKNNSKEKL 135 (185)
T ss_dssp -SSCEEECCTTGGGSHHHHHHHHH---HEEEEEEECCHHHHHHHHHCCTTCSSC---------------CCCCHHHHHHH
T ss_pred -CCcEEecCCceecCHHHHHHHHh---CCcEEEEECCHHHHHHHHhhcCCCCCC---------------CCCCCCHHHHH
Confidence 23344444 4444444555543 248999999999999999 4433211 11111122233
Q ss_pred HHHHHhhHHHHHHHHhcCcEEEEeCCC-ChhHHHHHHHHHHHhcC
Q 024067 218 RIYAEQGKSLEDYYSKQRKLLNFQVAA-APGETWQGLLSALHLQH 261 (273)
Q Consensus 218 ~~y~~~~~~l~~~y~~~~~~~~id~~~-s~~ev~~~I~~~l~~~~ 261 (273)
...... ...+|++.. -+.||++. +++++.++|.+.+....
T Consensus 136 ~~~~~~---r~~~y~~~a-d~~Idt~~~~~~e~~~~I~~~l~~~~ 176 (185)
T 3trf_A 136 QQLNEI---RKPLYQAMA-DLVYPTDDLNPRQLATQILVDIKQTY 176 (185)
T ss_dssp HHHHHH---HHHHHHHHC-SEEEECTTCCHHHHHHHHHHHSCC--
T ss_pred HHHHHH---HHHHHhhcC-CEEEECCCCCHHHHHHHHHHHHHHHh
Confidence 222222 223454422 25678776 89999999999887653
No 43
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=99.66 E-value=3.7e-15 Score=120.97 Aligned_cols=151 Identities=17% Similarity=0.148 Sum_probs=96.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCCc
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE 143 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~~ 143 (273)
+.|+|+|+|||||||+++.|++++|+++++.|.+...... . ..++ ... ..+.. +
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~----~----~~~~------------~~~-~~l~~-----~ 55 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAKSG----N----EKLF------------EHF-NKLAD-----E 55 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCCHHHHTTC----H----HHHH------------HHH-HHHTT-----C
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeeecCcccccchhH----H----HHHH------------HHH-HHHHh-----C
Confidence 5789999999999999999999999999999877754320 0 1111 000 11111 2
Q ss_pred ceEEEeCC---------------CCCHHHHHHHHhh-CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCC
Q 024067 144 SGFILDGI---------------PRTRIQAEILDQI-VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAA 207 (273)
Q Consensus 144 ~g~IlDg~---------------P~~~~qa~~l~~~-~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~ 207 (273)
..+|.|.+ .....+...+... ..|+++|+|+++++++.+|+..|... .
T Consensus 56 ~~vi~dr~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~l~~~~e~~~~R~~~r~r~----------------~ 119 (173)
T 3kb2_A 56 DNVIIDRFVYSNLVYAKKFKDYSILTERQLRFIEDKIKAKAKVVYLHADPSVIKKRLRVRGDE----------------Y 119 (173)
T ss_dssp CSEEEESCHHHHHHHTTTBTTCCCCCHHHHHHHHHHHTTTEEEEEEECCHHHHHHHHHHHSCS----------------C
T ss_pred CCeEEeeeecchHHHHHHHHHhhHhhHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcCCc----------------c
Confidence 33444421 1223344444432 46899999999999999999887421 1
Q ss_pred CcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCC-ChhHHHHHHHHHHHhcCC
Q 024067 208 DAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAA-APGETWQGLLSALHLQHM 262 (273)
Q Consensus 208 d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~-s~~ev~~~I~~~l~~~~~ 262 (273)
...+.+++..+.|.+ ....|. ...+.||+++ ++++++++|...+...+.
T Consensus 120 ~~~~~~~~~~~~~~~----~~~~~~--~~~~~id~~~~~~~ev~~~I~~~~~~~~~ 169 (173)
T 3kb2_A 120 IEGKDIDSILELYRE----VMSNAG--LHTYSWDTGQWSSDEIAKDIIFLVELEHH 169 (173)
T ss_dssp CCHHHHHHHHHHHHH----HHHTCS--SCEEEEETTTSCHHHHHHHHHHHHHHGGG
T ss_pred hhhhHHHHHHHHHHH----HHhhcC--CCEEEEECCCCCHHHHHHHHHHHHhCCCc
Confidence 112333333344432 333343 2478899984 999999999999987643
No 44
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=99.66 E-value=4.9e-15 Score=124.45 Aligned_cols=164 Identities=15% Similarity=0.136 Sum_probs=101.7
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCC-----CCH-------------
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKL-----VPE------------- 124 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~-----~~~------------- 124 (273)
++.|.|+|++||||||+++.|++ +|++++++|++.++...++......+.+.+..... +..
T Consensus 2 ~~~i~l~G~~GsGKST~~~~La~-lg~~~id~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~ 80 (206)
T 1jjv_A 2 TYIVGLTGGIGSGKTTIANLFTD-LGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDED 80 (206)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHT-TTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTCHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH-CCCcccchHHHHHHHccCChHHHHHHHHHhCHHHhccCccccHHHHHHHHhCCHHH
Confidence 35789999999999999999998 99999999999887655554444444443322111 110
Q ss_pred -----HHHHHHHH----HHHHhcccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCccc
Q 024067 125 -----DVIFALLS----KRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKE 195 (273)
Q Consensus 125 -----~~~~~ll~----~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~ 195 (273)
.+....+. +.+... ...++|+|+ |...+.. +. ..+|.+|+|++|++++.+|+..|..
T Consensus 81 ~~~l~~~~~p~v~~~~~~~~~~~---~~~~vv~~~-~~l~e~~--~~--~~~d~vi~l~~~~e~~~~Rl~~R~~------ 146 (206)
T 1jjv_A 81 KLWLNNLLHPAIRERMKQKLAEQ---TAPYTLFVV-PLLIENK--LT--ALCDRILVVDVSPQTQLARSAQRDN------ 146 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC---CSSEEEEEC-TTTTTTT--CG--GGCSEEEEEECCHHHHHHHHC----------
T ss_pred HHHHHhccCHHHHHHHHHHHHhc---CCCEEEEEe-chhhhcC--cH--hhCCEEEEEECCHHHHHHHHHHcCC------
Confidence 01111111 112211 235788887 4322211 11 2468999999999999999988742
Q ss_pred ccccCCCCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChh----HHHHHHHHHHHh
Q 024067 196 FLRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPG----ETWQGLLSALHL 259 (273)
Q Consensus 196 ~y~~~~~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~----ev~~~I~~~l~~ 259 (273)
.+.+.+.+++.. + .+..++|...+ +.||++++++ ++.++|...+..
T Consensus 147 ------------~~~e~~~~r~~~---q-~~~~~~~~~ad--~vIdn~~~~~~~~~~~~~~i~~~~~~ 196 (206)
T 1jjv_A 147 ------------NNFEQIQRIMNS---Q-VSQQERLKWAD--DVINNDAELAQNLPHLQQKVLELHQF 196 (206)
T ss_dssp -------------CHHHHHHHHHH---S-CCHHHHHHHCS--EEEECCSCHHHHHHHHHHHHHHHHHH
T ss_pred ------------CCHHHHHHHHHh---c-CChHHHHHhCC--EEEECCCCccccHHHHHHHHHHHHHH
Confidence 124456666553 1 23455566555 5688888999 999999888753
No 45
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=99.65 E-value=1.5e-15 Score=127.93 Aligned_cols=170 Identities=15% Similarity=0.101 Sum_probs=104.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHH-----------
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFA----------- 129 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~----------- 129 (273)
.+++.|+|+|+|||||||+++.|+++++..+++++. +++ ...+++.++.+++++..+..+++.....
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~-~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 84 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAEL-LRF-PERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRWEQVP 84 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEE-EES-SCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEE-eeC-CCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999877766632 221 1124678888999887766666543321
Q ss_pred HHHHHHHhcccCCcceEEEeCCC-----CCHH----HHHHHHh----hCCCceEEEEccCHHHHHHHHhcCCcCCCcccc
Q 024067 130 LLSKRLEEGYYRGESGFILDGIP-----RTRI----QAEILDQ----IVDVDLVINFKSIEDQLVKRNLESEAFSPHKEF 196 (273)
Q Consensus 130 ll~~~l~~~~~~~~~g~IlDg~P-----~~~~----qa~~l~~----~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~ 196 (273)
.+...+. .+..+|+|.+. .... ..+.+.. ...||++|+|++|++++.+|+..| .+.
T Consensus 85 ~i~~~l~-----~~~~vi~dr~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~r~-~~~----- 153 (215)
T 1nn5_A 85 LIKEKLS-----QGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFG-HER----- 153 (215)
T ss_dssp HHHHHHH-----TTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECCHHHHHHC------CT-----
T ss_pred HHHHHHH-----CCCEEEEeCCcccHHHHHhhcCCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccC-ccc-----
Confidence 1222222 24678899532 1110 1222221 135899999999999999998633 111
Q ss_pred cccCCCCCCCCCcHHHHHHHHH-HHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhc
Q 024067 197 LRLGGARFSAADAASAWKEKFR-IYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQ 260 (273)
Q Consensus 197 y~~~~~~~~~~d~~e~~~~rl~-~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~ 260 (273)
.+. . .+.+++. .|.+... .+ ...++.||+++++++++++|...+...
T Consensus 154 ---------~~~-~-~~~~~~~~~~~~~~~----~~--~~~~~~Id~~~~~e~~~~~i~~~l~~~ 201 (215)
T 1nn5_A 154 ---------YEN-G-AFQERALRCFHQLMK----DT--TLNWKMVDASKSIEAVHEDIRVLSEDA 201 (215)
T ss_dssp ---------TCS-H-HHHHHHHHHHHHHTT----CT--TSCEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred ---------cch-H-HHHHHHHHHHHHHHH----hC--CCCEEEEECCCCHHHHHHHHHHHHHHH
Confidence 111 1 2333332 2322110 01 135788999999999999999888654
No 46
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=99.65 E-value=4.1e-15 Score=124.69 Aligned_cols=177 Identities=14% Similarity=0.073 Sum_probs=98.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCC--eechhHHHHHHccCCChHHHHHHHHHHCCCC---CCHHHHH--------
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVP--HISMGSLVRQELSPRSALYKQIANAVNEGKL---VPEDVIF-------- 128 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~--~is~~dllr~~~~~~~~~g~~i~~~l~~g~~---~~~~~~~-------- 128 (273)
+++.|+|+|+|||||||+++.|+++++.. ++.++ .+.++.+++++..+.. .......
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~----------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~r~ 72 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIELKRDVYLTE----------WNSSDWIHDIIKEAKKKDLLTPLTFSLIHATDFS 72 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEEE----------TTCCCHHHHHHHHHTTTSCCCHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEec----------CCcHHHHHHHHhccccccCCCHHHHHHHHHHHHH
Confidence 36789999999999999999999999874 33321 0122344444433321 2221110
Q ss_pred HHHHHHHHhcccCCcceEEEeCCCCCHH--H---------HHHHHh-hCCCceEEEEccCHHHHHHHHh-cCCcCCCccc
Q 024067 129 ALLSKRLEEGYYRGESGFILDGIPRTRI--Q---------AEILDQ-IVDVDLVINFKSIEDQLVKRNL-ESEAFSPHKE 195 (273)
Q Consensus 129 ~ll~~~l~~~~~~~~~g~IlDg~P~~~~--q---------a~~l~~-~~~~d~vI~L~~~~e~l~~Rl~-~R~~~~~~~~ 195 (273)
..+...+... ...+..+|+|++|.+.. | ...+.. ...||++|+|++|++++.+|+. .|... ++
T Consensus 73 ~~~~~~i~~~-l~~g~~vi~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~~R~~~---~~ 148 (213)
T 2plr_A 73 DRYERYILPM-LKSGFIVISDRYIYTAYARDSVRGVDIDWVKKLYSFAIKPDITFYIRVSPDIALERIKKSKRKI---KP 148 (213)
T ss_dssp HHHHHTHHHH-HHTTCEEEEESCHHHHHHHHHTTTCCHHHHHHHTTTSCCCSEEEEEECCHHHHHHHHHHTTCCC---CT
T ss_pred HHHHHHHHHH-HhCCCEEEEeCcHhHHHHHHHhhCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcccccc---cc
Confidence 0111111110 11246789999987531 2 222322 2358999999999999999998 66521 11
Q ss_pred ccccCCCCCCCCC---cHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhc
Q 024067 196 FLRLGGARFSAAD---AASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQ 260 (273)
Q Consensus 196 ~y~~~~~~~~~~d---~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~ 260 (273)
+..........| ..+.+.+++..+... ..+. ..++.||+++++++++++|.+.+...
T Consensus 149 -~~~g~~~~~~~d~~e~~~~~~~r~~~~~~~---~~~~----~~~~~Id~~~~~e~v~~~I~~~l~~~ 208 (213)
T 2plr_A 149 -QEAGADIFPGLSPEEGFLKYQGLITEVYDK---LVKD----ENFIVIDGTKTPKEIQIQIRKFVGEL 208 (213)
T ss_dssp -TTTTTTTCTTSCHHHHHHHHHHHHHHHHHH---HTTT----TTCEEEETTSCHHHHHHHHHHHHHHH
T ss_pred -cccccccccccchhhhHHHHHHHHHHHHHH---HHhh----CCEEEEECCCCHHHHHHHHHHHHHHH
Confidence 100000001111 112344444332211 1111 15789999999999999999998754
No 47
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=99.65 E-value=2.7e-15 Score=127.26 Aligned_cols=168 Identities=15% Similarity=0.125 Sum_probs=103.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCC-----CCCCHHHHH--------
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEG-----KLVPEDVIF-------- 128 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g-----~~~~~~~~~-------- 128 (273)
+++.|+|+|++||||||+++.|++ +|++++++|+++++...++......+.+.+... ..+....+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~l~~~~f~~~~ 81 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-LGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPE 81 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHHTCHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-cCCEEEEccHHHHHHhcCChHHHHHHHHHhHHHHcCCCCCCCHHHHHHHHhCCHH
Confidence 467899999999999999999998 999999999999876655554445555544211 112222111
Q ss_pred ------HHHHHHHH----h-cccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCccccc
Q 024067 129 ------ALLSKRLE----E-GYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFL 197 (273)
Q Consensus 129 ------~ll~~~l~----~-~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y 197 (273)
.++...+. . ..... .++++.+.|...... +. ..+|.+|+|++|++++.+|+..|..
T Consensus 82 ~~~~l~~~~~p~v~~~~~~~~~~~~-~~~vi~~~~~l~~~~--~~--~~~d~vi~l~~~~e~~~~Rl~~R~~-------- 148 (218)
T 1vht_A 82 EKNWLNALLHPLIQQETQHQIQQAT-SPYVLWVVPLLVENS--LY--KKANRVLVVDVSPETQLKRTMQRDD-------- 148 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCC-SSEEEEECTTTTTTT--GG--GGCSEEEEEECCHHHHHHHHHHHHT--------
T ss_pred HHHHHHHhHCHHHHHHHHHHHHhcC-CCEEEEEeeeeeccC--cc--ccCCEEEEEECCHHHHHHHHHHcCC--------
Confidence 11111111 0 00001 234444445433321 21 2578999999999999999987641
Q ss_pred ccCCCCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHh
Q 024067 198 RLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHL 259 (273)
Q Consensus 198 ~~~~~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~ 259 (273)
.+.+.+.+++... .+..+++...+ +.||++++++++.++|...+..
T Consensus 149 ----------~~~~~~~~~~~~~----~~~~~~~~~ad--~vId~~~~~~~~~~~I~~~l~~ 194 (218)
T 1vht_A 149 ----------VTREHVEQILAAQ----ATREARLAVAD--DVIDNNGAPDAIASDVARLHAH 194 (218)
T ss_dssp ----------CCHHHHHHHHHHS----CCHHHHHHHCS--EEEECSSCTTSHHHHHHHHHHH
T ss_pred ----------CCHHHHHHHHHhc----CChHHHHHhCC--EEEECCCCHHHHHHHHHHHHHH
Confidence 1233455555431 12233334344 5688888999999999888764
No 48
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=99.64 E-value=2e-15 Score=125.06 Aligned_cols=112 Identities=14% Similarity=0.307 Sum_probs=74.4
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHH-hCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCC---CHHHHHHHHHHHH
Q 024067 60 PRRGVQWVLIGDPGVKKHVYADNLSKL-LEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLV---PEDVIFALLSKRL 135 (273)
Q Consensus 60 ~~~~~~Ivi~G~pGSGKsT~a~~La~~-~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~---~~~~~~~ll~~~l 135 (273)
+.+++.|+|+|+|||||||+++.|++. +|++++++|+++++... ...+++. +... .+ +++.....+...+
T Consensus 7 ~~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~~~~-~~~~~~~----~~~~-~~~r~~~~~~~~~l~~~~ 80 (184)
T 1y63_A 7 QPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHF-YTEYDTE----LDTH-IIEEKDEDRLLDFMEPIM 80 (184)
T ss_dssp CCSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHTTC-SCC----------CC-CCCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHHhhh-hhhHHHH----hhhc-ccCCCCHHHHHHHHHHHH
Confidence 346789999999999999999999999 79999999999987421 1122221 1111 12 2333344444433
Q ss_pred HhcccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCC
Q 024067 136 EEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESE 188 (273)
Q Consensus 136 ~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (273)
.. ..++|+|+.... .+.. ..++.+|+|++|.+++.+|+.+|.
T Consensus 81 ~~-----~g~~vi~~~~~~-----~~~~-~~~~~vi~l~~~~e~~~~Rl~~R~ 122 (184)
T 1y63_A 81 VS-----RGNHVVDYHSSE-----LFPE-RWFHMVVVLHTSTEVLFERLTKRQ 122 (184)
T ss_dssp TS-----SSEEEEECSCCT-----TSCG-GGCSEEEEEECCHHHHHHHHHHTT
T ss_pred hc-----cCCEEEeCchHh-----hhhh-ccCCEEEEEECCHHHHHHHHHhCC
Confidence 21 357888875332 1111 136799999999999999999885
No 49
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=99.64 E-value=3e-14 Score=119.78 Aligned_cols=163 Identities=14% Similarity=0.143 Sum_probs=104.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHh---CCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHH----------HH
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLL---EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIF----------AL 130 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~---g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~----------~l 130 (273)
+.|+|.|+.||||||+++.|++.+ |..++-+ ..+.+++.++.+++++.++...+..... ..
T Consensus 1 mfI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t------reP~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~ 74 (197)
T 3hjn_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK------REPGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTE 74 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE------ESSCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE------ECCCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999988 5555543 2356788999999988766554432211 12
Q ss_pred HHHHHHhcccCCcceEEEeCCCCC------------HHHHHHHHhh----CCCceEEEEccCHHHHHHHHhcCCcCCCcc
Q 024067 131 LSKRLEEGYYRGESGFILDGIPRT------------RIQAEILDQI----VDVDLVINFKSIEDQLVKRNLESEAFSPHK 194 (273)
Q Consensus 131 l~~~l~~~~~~~~~g~IlDg~P~~------------~~qa~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~ 194 (273)
+...+. .+..+|.|.|..+ ......|... ..||++|+|++|+++..+|...+..
T Consensus 75 I~~~L~-----~g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~dr----- 144 (197)
T 3hjn_A 75 IKQYLS-----EGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGELNR----- 144 (197)
T ss_dssp HHHHHT-----TTCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC---CT-----
T ss_pred HHHHHH-----CCCeEEecccchHHHHHHHhccCCCHHHHHHHHhhhhcCCCCCceeecCcChHHHHHhCcCcCc-----
Confidence 222232 2456777865322 1122222221 4699999999999999999654421
Q ss_pred cccccCCCCCCCCCcHHHHHHHH-HHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhcC
Q 024067 195 EFLRLGGARFSAADAASAWKEKF-RIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQH 261 (273)
Q Consensus 195 ~~y~~~~~~~~~~d~~e~~~~rl-~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~~ 261 (273)
.+ +. .+.+++ +.|.+. .. .....++.||+++++++|.++|.+.+..+.
T Consensus 145 -----------~e-~~-ef~~rv~~~y~~l----a~--~~~~~~~~IDa~~~~eeV~~~I~~~i~~rl 193 (197)
T 3hjn_A 145 -----------FE-KR-EFLERVREGYLVL----AR--EHPERIVVLDGKRSIEEIHRDVVREVKRRW 193 (197)
T ss_dssp -----------TC-CH-HHHHHHHHHHHHH----HH--HCTTTEEEEETTSCHHHHHHHHHHHHSCC-
T ss_pred -----------cc-cH-HHHHHHHHHHHHH----HH--hCCCCEEEEcCCCCHHHHHHHHHHHHHHHh
Confidence 11 12 234443 344332 11 112468999999999999999999998763
No 50
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=99.63 E-value=3.1e-16 Score=128.66 Aligned_cols=160 Identities=14% Similarity=0.104 Sum_probs=95.6
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHhcccC
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN-EGKLVPEDVIFALLSKRLEEGYYR 141 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~-~g~~~~~~~~~~ll~~~l~~~~~~ 141 (273)
++.|+|+|+|||||||+++.|++++|+++++.|+++++... ..+.+++. .|.....+....++.. +..
T Consensus 4 m~~i~i~G~~GsGKsTla~~La~~l~~~~~d~d~~~~~~~g------~~~~~~~~~~g~~~~~~~~~~~~~~-l~~---- 72 (175)
T 1via_A 4 AKNIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFN------QKVSEIFEQKRENFFREQEQKMADF-FSS---- 72 (175)
T ss_dssp -CCEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHHT------SCHHHHHHHHCHHHHHHHHHHHHHH-HTT----
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcccHHHHHHcC------CCHHHHHHHcCHHHHHHHHHHHHHH-HHc----
Confidence 34799999999999999999999999999999998875421 11222222 2322222222333322 221
Q ss_pred CcceEEEe-CCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHHHH
Q 024067 142 GESGFILD-GIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIY 220 (273)
Q Consensus 142 ~~~g~IlD-g~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~y 220 (273)
..++|++ |.+.... .. | ...+.+|+|+++.+++.+|+..|.... .+ . ..+.+.+++.+.
T Consensus 73 -~~~~vi~~g~~~~~~-~~-l---~~~~~~i~l~~~~e~~~~R~~~r~~~~----------r~-~-~~~~~~i~~~~~-- 132 (175)
T 1via_A 73 -CEKACIATGGGFVNV-SN-L---EKAGFCIYLKADFEYLKKRLDKDEISK----------RP-L-FYDEIKAKKLYN-- 132 (175)
T ss_dssp -CCSEEEECCTTGGGS-TT-G---GGGCEEEEEECCHHHHTTCCCGGGTTT----------SC-T-TCCHHHHHHHHH--
T ss_pred -cCCEEEECCCCEehh-hH-H---hcCCEEEEEeCCHHHHHHHHhcccCCC----------CC-C-cccHHHHHHHHH--
Confidence 2456666 5432221 11 2 235689999999999999987663100 01 0 111233332222
Q ss_pred HHhhHHHHHHHHhcCcEEEEeCC-CChhHHHHHHHHHHHh
Q 024067 221 AEQGKSLEDYYSKQRKLLNFQVA-AAPGETWQGLLSALHL 259 (273)
Q Consensus 221 ~~~~~~l~~~y~~~~~~~~id~~-~s~~ev~~~I~~~l~~ 259 (273)
....+|.... .+.||++ .+++++++.|.+.+..
T Consensus 133 -----~r~~~y~~~~-~~~Idt~~~~~eev~~~I~~~l~~ 166 (175)
T 1via_A 133 -----ERLSKYEQKA-NFILNIENKNIDELLSEIKKVIKE 166 (175)
T ss_dssp -----HHHHHHHHHC-SEEEECTTCCHHHHHHHHHHHHC-
T ss_pred -----HHHHHHHhcC-CEEEECCCCCHHHHHHHHHHHHHh
Confidence 2234565422 4778988 6999999999998853
No 51
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=99.63 E-value=1.1e-14 Score=122.03 Aligned_cols=166 Identities=13% Similarity=0.136 Sum_probs=105.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHH---HHHHHHHHh
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIF---ALLSKRLEE 137 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~---~ll~~~l~~ 137 (273)
.++..|+|+|++||||||+++.|++.+|..+++.+++.... ... ....|....+.... ..+...+..
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~~~~~---------~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~ 96 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPE---------NIA-TMQRGIPLTDEDRWPWLRSLAEWMDA 96 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEEGGGGSCHH---------HHH-HHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhCCeEEcccccccHH---------HHH-HHhcCCCCCCcccccHHHHHHHHHHH
Confidence 35788999999999999999999999999999988764210 000 11123322222111 112221111
Q ss_pred cccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHH
Q 024067 138 GYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKF 217 (273)
Q Consensus 138 ~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl 217 (273)
. ...+..+|+|.......+.+.+.....+..+|+|+|+.+++.+|+..|...+ ...+.++..+
T Consensus 97 ~-~~~g~~viid~~~~~~~~~~~l~~~~~~~~vv~l~~~~e~l~~Rl~~R~~~~----------------~~~~~l~~~~ 159 (200)
T 4eun_A 97 R-ADAGVSTIITCSALKRTYRDVLREGPPSVDFLHLDGPAEVIKGRMSKREGHF----------------MPASLLQSQL 159 (200)
T ss_dssp H-HHTTCCEEEEECCCCHHHHHHHTTSSSCCEEEEEECCHHHHHHHHTTCSCCS----------------SCGGGHHHHH
T ss_pred H-HhcCCCEEEEchhhhHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHhcccCC----------------CCHHHHHHHH
Confidence 1 0123568888765666666666655556689999999999999998886432 1122333333
Q ss_pred HHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhcC
Q 024067 218 RIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQH 261 (273)
Q Consensus 218 ~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~~ 261 (273)
..+ ..+|.+. ..+.||++++++++.++|...|....
T Consensus 160 ~~~-------~~~~~~~-~~~~Id~~~~~~e~~~~I~~~l~~~~ 195 (200)
T 4eun_A 160 ATL-------EALEPDE-SGIVLDLRQPPEQLIERALTWLDIAP 195 (200)
T ss_dssp HHC-------CCCCTTS-CEEEEETTSCHHHHHHHHHHHHCCCG
T ss_pred HHh-------CCCCCCC-CeEEEECCCCHHHHHHHHHHHHHhcc
Confidence 222 1233322 36789999999999999999997543
No 52
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=99.62 E-value=4.2e-14 Score=115.63 Aligned_cols=159 Identities=11% Similarity=0.088 Sum_probs=98.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHH-------HHHHHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPED-------VIFALLSK 133 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~-------~~~~ll~~ 133 (273)
.++..|+|+|+|||||||+++.|++.+|..+++.+++.+.. .+.. ...|..+.+. .+..++..
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~~~~~~---------~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~ 75 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRR---------NIEK-MASGEPLNDDDRKPWLQALNDAAFA 75 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHH---------HHHH-HHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCccccchH---------HHHH-hhcCcCCCccccccHHHHHHHHHHH
Confidence 35778999999999999999999999999999998764210 0111 0112222221 11122222
Q ss_pred HHHhcccCCcceEEEeCCCCCHHHHHHHHhhCCCc-eEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHH
Q 024067 134 RLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVD-LVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASA 212 (273)
Q Consensus 134 ~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d-~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~ 212 (273)
.+.. +.++|+|.......+.+.+.... ++ .+|+|+||.+++.+|+..|.... . ..+.
T Consensus 76 ~~~~-----~~~~vi~~~~~~~~~~~~l~~~~-~~~~vv~l~~~~e~~~~R~~~R~~~~---------------~-~~~~ 133 (175)
T 1knq_A 76 MQRT-----NKVSLIVCSALKKHYRDLLREGN-PNLSFIYLKGDFDVIESRLKARKGHF---------------F-KTQM 133 (175)
T ss_dssp HHHH-----CSEEEEECCCCSHHHHHHHHTTC-TTEEEEEEECCHHHHHHHHHTSTTCC---------------C-CHHH
T ss_pred HHhc-----CCcEEEEeCchHHHHHHHHHhcC-CCEEEEEEECCHHHHHHHHHhccCCC---------------C-chHH
Confidence 2222 35788884323344445554433 45 79999999999999999886321 1 1333
Q ss_pred HHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHH
Q 024067 213 WKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALH 258 (273)
Q Consensus 213 ~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~ 258 (273)
+..++..|. +. +|... ..+.||++.+++++.++|...+.
T Consensus 134 ~~~~~~~~~----~~--~~~~~-~~~~Id~~~~~~~~~~~i~~~l~ 172 (175)
T 1knq_A 134 LVTQFETLQ----EP--GADET-DVLVVDIDQPLEGVVASTIEVIK 172 (175)
T ss_dssp HHHHHHHCC----CC--CTTCT-TEEEEECSSCHHHHHHHHHHHHH
T ss_pred HHHHHHhhh----Cc--ccCCC-CeEEEeCCCCHHHHHHHHHHHHh
Confidence 443332221 11 13322 36789999999999999999875
No 53
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=99.62 E-value=1.2e-14 Score=119.29 Aligned_cols=159 Identities=10% Similarity=-0.005 Sum_probs=92.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCee-chhHHHHHHccCCChHHHHHHHHHHCCCCC----CH--HHHHHHHHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHI-SMGSLVRQELSPRSALYKQIANAVNEGKLV----PE--DVIFALLSKR 134 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~i-s~~dllr~~~~~~~~~g~~i~~~l~~g~~~----~~--~~~~~ll~~~ 134 (273)
+|+.|+|+|+|||||||+++.|++++|.+++ +. +..+..+.+++..|... .. +.+...+...
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~d~-----------~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~ 72 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFVFEP-----------EEMGQALRKLTPGFSGDPQEHPMWIPLMLDALQYA 72 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHSTTCEECCT-----------HHHHHHHHHTSTTCCSCGGGSTTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCEEEch-----------hhhHHHHHHhCccccchhhhhHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999988 32 12334444444323211 10 2334455555
Q ss_pred HHhcccCCcceEEEeCCCCCHHHHH----HHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcH
Q 024067 135 LEEGYYRGESGFILDGIPRTRIQAE----ILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAA 210 (273)
Q Consensus 135 l~~~~~~~~~g~IlDg~P~~~~qa~----~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~ 210 (273)
+.. .+..+|+|+......... .+.....+-.+|+|+||++++.+|+..|...+ ...
T Consensus 73 l~~----~g~~vi~d~~~~~~~~~~~~~~~l~~~~~~~~~i~l~~~~e~~~~R~~~R~~r~----------------~~~ 132 (183)
T 2vli_A 73 SRE----AAGPLIVPVSISDTARHRRLMSGLKDRGLSVHHFTLIAPLNVVLERLRRDGQPQ----------------VNV 132 (183)
T ss_dssp HHH----CSSCEEEEECCCCHHHHHHHHHHHHHTTCCCEEEEEECCHHHHHHHHHTC--------------------CCH
T ss_pred HHh----CCCcEEEeeeccCHHHHHHHHHHHHhcCCceEEEEEeCCHHHHHHHHHhccccc----------------hhH
Confidence 543 135578897665543222 22222223356999999999999998875211 112
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCC-CChhHHHHHHHHHHHhcCC
Q 024067 211 SAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVA-AAPGETWQGLLSALHLQHM 262 (273)
Q Consensus 211 e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~-~s~~ev~~~I~~~l~~~~~ 262 (273)
+.+++ +.+...+. . .. + .||++ .+++++.++|.+.+.....
T Consensus 133 ~~~~~----~~~~~~~~-~----~~-~-~Id~~~~~~~~~~~~I~~~l~~~~~ 174 (183)
T 2vli_A 133 GTVED----RLNELRGE-Q----FQ-T-HIDTAGLGTQQVAEQIAAQVGLTLA 174 (183)
T ss_dssp HHHHH----HHHHHTSG-G----GC-S-EEECTTCCHHHHHHHHHHHHTCCCC
T ss_pred HHHHH----HHHhhccc-c----cc-e-EeeCCCCCHHHHHHHHHHHHHHhcC
Confidence 23333 22222222 2 12 3 78987 7999999999999976543
No 54
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=99.62 E-value=2e-15 Score=132.07 Aligned_cols=163 Identities=19% Similarity=0.222 Sum_probs=104.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH---hCCCee--chhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKL---LEVPHI--SMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLE 136 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~---~g~~~i--s~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~ 136 (273)
+++.|+|+|+|||||||+++.|++. +|++++ +.|. +++.+.+-...++. .........+...+.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~-~~~~l~~~~~~~e~----------~~~~~~~~~i~~~l~ 71 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDL-IRESFPVWKEKYEE----------FIKKSTYRLIDSALK 71 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHH-HHTTSSSCCGGGHH----------HHHHHHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchH-HHHHHhhhhHHHHH----------HHHHHHHHHHHHHhh
Confidence 5789999999999999999999998 788887 7654 44333221111110 001112223333332
Q ss_pred hcccCCcceEEEeCCCCCHHHHHHHHhh----CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHH
Q 024067 137 EGYYRGESGFILDGIPRTRIQAEILDQI----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASA 212 (273)
Q Consensus 137 ~~~~~~~~g~IlDg~P~~~~qa~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~ 212 (273)
. ..+|+|+.+....+...|... ..++++|+|+||.+++.+|+..|.. + ...+.
T Consensus 72 -----~-~~vIiD~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R~~-~----------------~~~~~ 128 (260)
T 3a4m_A 72 -----N-YWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIERGE-K----------------IPNEV 128 (260)
T ss_dssp -----T-SEEEECSCCCSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHTTC-S----------------SCHHH
T ss_pred -----C-CEEEEeCCcccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhCCC-C----------------CCHHH
Confidence 2 689999988776666655432 4578999999999999999988752 1 12345
Q ss_pred HHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCC--ChhHHHHHHHHHHHhcCC
Q 024067 213 WKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAA--APGETWQGLLSALHLQHM 262 (273)
Q Consensus 213 ~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~--s~~ev~~~I~~~l~~~~~ 262 (273)
+++....|.+ +. ..|.-....+.||++. +++++++.|...+..+..
T Consensus 129 l~~~~~~~e~---~~-~~~~~~~~~~~Id~~~~~~~~ei~~~I~~~l~~~~~ 176 (260)
T 3a4m_A 129 IKKMYEKFDE---PG-KKYKWDEPFLIIDTTKDIDFNEIAKKLIEKSKEIPK 176 (260)
T ss_dssp HHHHHHHCCC---TT-SSCGGGCCSEEEETTSCCCHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHhcC---cc-ccCCCCCCEEEEeCCCCCCHHHHHHHHHhcccCCCC
Confidence 5544444431 11 1122123467899887 899999999999886543
No 55
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=99.62 E-value=4.5e-15 Score=131.43 Aligned_cols=170 Identities=16% Similarity=0.163 Sum_probs=107.8
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCC-----CCCCHHH--------
Q 024067 60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEG-----KLVPEDV-------- 126 (273)
Q Consensus 60 ~~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g-----~~~~~~~-------- 126 (273)
+.++++|+|+|+|||||||+|+.|+ .+|+++|++|++.++...++......+.+.+... ..+....
T Consensus 72 ~~~~~iI~I~G~~GSGKSTva~~La-~lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~vf~~ 150 (281)
T 2f6r_A 72 PSGLYVLGLTGISGSGKSSVAQRLK-NLGAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRVFGN 150 (281)
T ss_dssp CTTCEEEEEEECTTSCHHHHHHHHH-HHTCEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHTTC
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHH-HCCCcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHHHhCC
Confidence 3467899999999999999999999 6899999999999887766655555544433211 1111111
Q ss_pred ----------HHH----HHHHHHHhcccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCC
Q 024067 127 ----------IFA----LLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSP 192 (273)
Q Consensus 127 ----------~~~----ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~ 192 (273)
+.. .+.+.+......+...+|+||...... .+. ..+|.+|+|++|++++++|+..|...
T Consensus 151 ~~~~~~l~~i~~P~i~~~~~~~~~~~~~~~~~~vIveg~~l~~~---~~~--~~~d~vI~l~a~~ev~~~Rl~~R~g~-- 223 (281)
T 2f6r_A 151 KKQMKILTDIVWPVIAKLAREEMDVAVAKGKTLCVIDAAMLLEA---GWQ--SMVHEVWTVVIPETEAVRRIVERDGL-- 223 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTTTTTT---TGG--GGCSEEEEEECCHHHHHHHHHHHHCC--
T ss_pred HHHHHHhhcccChHHHHHHHHHHHHHhccCCCEEEEEechhhcc---chH--HhCCEEEEEcCCHHHHHHHHHHcCCC--
Confidence 011 111222211011235789998632211 111 24689999999999999999887411
Q ss_pred cccccccCCCCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHh
Q 024067 193 HKEFLRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHL 259 (273)
Q Consensus 193 ~~~~y~~~~~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~ 259 (273)
+.+.+.+++... .+..+++...+ +.||++++++++.++|...+..
T Consensus 224 ----------------s~e~~~~ri~~q----~~~~~~~~~AD--~vIdn~~s~eel~~~I~~~l~~ 268 (281)
T 2f6r_A 224 ----------------SEAAAQSRLQSQ----MSGQQLVEQSN--VVLSTLWESHVTQSQVEKAWNL 268 (281)
T ss_dssp ----------------CHHHHHHHHHTS----CCHHHHHHTCS--EEEECSSCHHHHHHHHHHHHHH
T ss_pred ----------------CHHHHHHHHHHc----CChHhhHhhCC--EEEECCCCHHHHHHHHHHHHHH
Confidence 234555555443 12334444444 5578888999999999988864
No 56
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=99.61 E-value=3.7e-15 Score=129.91 Aligned_cols=176 Identities=15% Similarity=0.119 Sum_probs=106.3
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHhcccC
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNE-GKLVPEDVIFALLSKRLEEGYYR 141 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~-g~~~~~~~~~~ll~~~l~~~~~~ 141 (273)
+..|+|+|+|||||||+++.|++.+|++++++|++++....+ . .+.+++.. |.....+.....+.+.....
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~~~g-~----~i~~i~~~~ge~~fr~~e~~~l~~l~~~~--- 119 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAMKG-T----SVAEIFEHFGESVFREKETEALKKLSLMY--- 119 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHSTT-S----CHHHHHHHHCHHHHHHHHHHHHHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHHHhcC-c----cHHHHHHHhCcHHHHHHHHHHHHHHHhhc---
Confidence 668999999999999999999999999999999998865422 2 23333332 43333334444444433321
Q ss_pred CcceEEEe--CCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHHH
Q 024067 142 GESGFILD--GIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRI 219 (273)
Q Consensus 142 ~~~g~IlD--g~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~ 219 (273)
...+|.+ |.+........+. .+++|||+++.+++.+|+..+.... +.. ......+++.+...+++..
T Consensus 120 -~~~Via~GgG~v~~~~~~~~l~----~~~vV~L~a~~e~l~~Rl~~~~~~~---Rpl---~~~~~~~d~~~~~~~~l~~ 188 (250)
T 3nwj_A 120 -HQVVVSTGGGAVIRPINWKYMH----KGISIWLDVPLEALAHRIAAVGTGS---RPL---LHDDESGDTYTAALNRLST 188 (250)
T ss_dssp -SSEEEECCGGGGGSHHHHHHHT----TSEEEEEECCHHHHHHHHHC----------------------CHHHHHHHHHH
T ss_pred -CCcEEecCCCeecCHHHHHHHh----CCcEEEEECCHHHHHHHHhhcCCCC---CCc---ccCCCcccchhhHHHHHHH
Confidence 2344544 4555555555553 2789999999999999998632111 000 0000112222333444544
Q ss_pred HHHhhHHHHHHHHhcCcEEEE----------eCC-CChhHHHHHHHHHHHhc
Q 024067 220 YAEQGKSLEDYYSKQRKLLNF----------QVA-AAPGETWQGLLSALHLQ 260 (273)
Q Consensus 220 y~~~~~~l~~~y~~~~~~~~i----------d~~-~s~~ev~~~I~~~l~~~ 260 (273)
+.+... ..|...+.++.+ |++ .+++++.+.|.+.+...
T Consensus 189 l~~eR~---~lY~~ad~vi~~~~~~~~~~~iDTs~~s~eev~~~I~~~i~~~ 237 (250)
T 3nwj_A 189 IWDARG---EAYTKASARVSLENITLKLGYRSVSDLTPAEIAIEAFEQVQSY 237 (250)
T ss_dssp HHHHHH---HHHTTSSEEEEHHHHHHHHTCSSGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHH---HHHhhCCEEEEecccccccccccCCCCCHHHHHHHHHHHHHHH
Confidence 444333 457766555533 543 68999999999988764
No 57
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=99.61 E-value=7.1e-16 Score=127.73 Aligned_cols=119 Identities=16% Similarity=0.181 Sum_probs=72.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccC
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~ 141 (273)
+++.|+|+|+|||||||+++.|++.+|+++++.|++...........+......+.. .-.+.+...+...+..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~---- 76 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFKEVMFDGLGWSDREWSRRVGA---TAIMMLYHTAATILQS---- 76 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHCCCSHHHHHHHHH---HHHHHHHHHHHHHHHT----
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHHHHHHHHHHhcCccchHHHHHhhH---HHHHHHHHHHHHHHhC----
Confidence 578999999999999999999999999999999766432211000000000000000 0001111222233332
Q ss_pred CcceEEEeCCCCCHHHHHH---HHh-hCCCceEEEEccCHHHHHHHHhcCC
Q 024067 142 GESGFILDGIPRTRIQAEI---LDQ-IVDVDLVINFKSIEDQLVKRNLESE 188 (273)
Q Consensus 142 ~~~g~IlDg~P~~~~qa~~---l~~-~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (273)
+.++|+|+++....+... +.. ...++++|+|++|++++.+|+..|.
T Consensus 77 -g~~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~e~~~~R~~~R~ 126 (193)
T 2rhm_A 77 -GQSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASGDVLVERILSRI 126 (193)
T ss_dssp -TCCEEEEECCCHHHHHHHHHHHHHHSCCEEEEEEEECCHHHHHHHHHHHH
T ss_pred -CCeEEEecCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHhc
Confidence 468999998843222222 222 2457899999999999999998775
No 58
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.59 E-value=4.2e-15 Score=126.37 Aligned_cols=179 Identities=13% Similarity=0.096 Sum_probs=97.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHcc----CCChHH--HHHHHHHH-----------------CC
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELS----PRSALY--KQIANAVN-----------------EG 119 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~----~~~~~g--~~i~~~l~-----------------~g 119 (273)
+++|.|+|++||||||+++.|++.+|++++++|++++.... .+.++. ..+.++.. .|
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEG 84 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEECC
Confidence 46899999999999999999999999999999999985431 121111 11222211 12
Q ss_pred CCCCHHHH----H---------HHHHHHHHhc--ccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHH
Q 024067 120 KLVPEDVI----F---------ALLSKRLEEG--YYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRN 184 (273)
Q Consensus 120 ~~~~~~~~----~---------~ll~~~l~~~--~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl 184 (273)
..+++... . ..+.+.+... ......++|+||+... ++ .+..+|++|+|+++.+++.+|+
T Consensus 85 ~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~~~~--~~----~~~~~d~~i~l~~~~e~~~~R~ 158 (227)
T 1cke_A 85 EDVSGEIRTQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGRDMG--TV----VFPDAPVKIFLDASSEERAHRR 158 (227)
T ss_dssp EECHHHHTSHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEESSCC--CC----CCTTCSEEEEEECCHHHHHHHH
T ss_pred eeCchhhCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECCCcc--ce----EecCCCEEEEEeCCHHHHHHHH
Confidence 22222111 0 1222322211 0123578999997321 11 1235799999999999999995
Q ss_pred hcCCcCCCcccccccCCCCCCCCCcHHHHHHHHH-HHHHhhHHHHHHHHhcCcEEEEeCC-CChhHHHHHHHHHHHhc
Q 024067 185 LESEAFSPHKEFLRLGGARFSAADAASAWKEKFR-IYAEQGKSLEDYYSKQRKLLNFQVA-AAPGETWQGLLSALHLQ 260 (273)
Q Consensus 185 ~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~-~y~~~~~~l~~~y~~~~~~~~id~~-~s~~ev~~~I~~~l~~~ 260 (273)
..+... .|. ....++..+.+.+|+. .|.....|+..+ ...+.||++ .++++++++|.+.+...
T Consensus 159 ~~~l~~--rg~-------~~~~~~~~~~i~~R~~~~~~~~~~pl~~~----~~~~~Id~~~~~~~ev~~~I~~~l~~~ 223 (227)
T 1cke_A 159 MLQLQV--KGF-------SVNFERLLAEIKERDDRDRNRAVAPLVPA----ADALVLDSTTLSIEQVIEKALQYARQK 223 (227)
T ss_dssp HHHHHH--HTC-------CCCHHHHHHHHC-------------CCCC----TTCEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHh--CCc-------cCCHHHHHHHHHHHHHhhhhhcccCccCC----CCEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 432000 000 0011222233333322 233222333221 123789988 79999999999988654
No 59
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=99.59 E-value=1.4e-14 Score=121.29 Aligned_cols=170 Identities=11% Similarity=0.144 Sum_probs=104.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCC-----CCCHHHH-----------
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGK-----LVPEDVI----------- 127 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~-----~~~~~~~----------- 127 (273)
++|+|+|++||||||+++.|++ +|++++++|+++++...++......+.+.+.... ......+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~ 80 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-LGAYVLDADKLIHSFYRKGHPVYEEVVKTFGKGILDEEGNIDRKKLADIVFKDEEKL 80 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-TTCEEEEHHHHHHGGGSSSSHHHHHHHHHHCTTTTEETTEECHHHHHHTTSSCHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH-CCCEEEEccHHHHHHhcCCHHHHHHHHHHhCHHhhCCCCcCCHHHHHHHHhCCHHHH
Confidence 5799999999999999999999 9999999999998766554444444444332111 1111111
Q ss_pred ---HHHHH--------HHHHhcccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccc
Q 024067 128 ---FALLS--------KRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEF 196 (273)
Q Consensus 128 ---~~ll~--------~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~ 196 (273)
..+.. +.+.. ..+...+|+|+.-..... +. ..+|.+|+|++|++++.+|+..|..
T Consensus 81 ~~l~~l~~~~v~~~~~~~~~~--~~~~~~vive~~~l~~~~---~~--~~~~~~i~l~~~~e~~~~Rl~~R~~------- 146 (204)
T 2if2_A 81 RKLEEITHRALYKEIEKITKN--LSEDTLFILEASLLVEKG---TY--KNYDKLIVVYAPYEVCKERAIKRGM------- 146 (204)
T ss_dssp HHHHHHHHHHHTTTHHHHHHH--SCTTCCEEEECSCSTTTT---CG--GGSSEEEEECCCHHHHHHHHHHTCC-------
T ss_pred HHHHHhhCHHHHHHHHHHHHh--ccCCCEEEEEccccccCC---ch--hhCCEEEEEECCHHHHHHHHHHcCC-------
Confidence 11111 11111 111157889974211111 11 2378999999999999999988731
Q ss_pred cccCCCCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhcCCCCCC
Q 024067 197 LRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQHMNAVS 266 (273)
Q Consensus 197 y~~~~~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~~~~~~~ 266 (273)
+.+.+.+++.... +..+++...+ +.||++++++++.++|...+.....++..
T Consensus 147 ------------~~~~~~~~~~~~~----~~~~~~~~ad--~vId~~~~~~~~~~~i~~~l~~~~~~~~~ 198 (204)
T 2if2_A 147 ------------SEEDFERRWKKQM----PIEEKVKYAD--YVIDNSGSIEETYKQVKKVYEELTRDPLE 198 (204)
T ss_dssp ------------CHHHHHHHHTTSC----CHHHHGGGCS--EECCCSSCHHHHHHHHHHHHHTTCC----
T ss_pred ------------CHHHHHHHHHhCC----ChhHHHhcCC--EEEECCCCHHHHHHHHHHHHHHHhcChhh
Confidence 1234555554321 2233444344 56888889999999999999876666543
No 60
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=99.58 E-value=2e-14 Score=123.14 Aligned_cols=169 Identities=9% Similarity=0.028 Sum_probs=96.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCC-CeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHH-----------
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEV-PHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIF----------- 128 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g~-~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~----------- 128 (273)
.+++.|+|.|++||||||+++.|++.++. ..+++-.+ ...+.++++|+.|++++.+..........
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~--treP~~t~~g~~ir~~l~~~~~~~~~~e~llf~a~R~~~~ 96 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVL--TREPGGTLLNESVRNLLFKAQGLDSLSELLFFIAMRREHF 96 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEE--EESSCSSHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEe--eeCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999998865 33322100 12356789999999988753224433221
Q ss_pred -HHHHHHHHhcccCCcceEEEeCCCC------------CHHHHHHHHhh---CCCceEEEEccCHHHHHHHHhcCCcCCC
Q 024067 129 -ALLSKRLEEGYYRGESGFILDGIPR------------TRIQAEILDQI---VDVDLVINFKSIEDQLVKRNLESEAFSP 192 (273)
Q Consensus 129 -~ll~~~l~~~~~~~~~g~IlDg~P~------------~~~qa~~l~~~---~~~d~vI~L~~~~e~l~~Rl~~R~~~~~ 192 (273)
+.+...+.. +..+|.|.|.. .......+..+ ..||++|+|++|+++.++|+ ++...
T Consensus 97 ~~~I~paL~~-----g~~VI~DRy~~S~~Ayq~~~~g~~~~~~~~l~~~~~~~~PDl~I~Ldv~~e~~~~Ri-~rdr~-- 168 (223)
T 3ld9_A 97 VKIIKPSLMQ-----KKIVICDRFIDSTIAYQGYGQGIDCSLIDQLNDLVIDVYPDITFIIDVDINESLSRS-CKNGY-- 168 (223)
T ss_dssp HHTHHHHHHT-----TCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHCSSCCSEEEEEECC----------------
T ss_pred HHHHHHHHhc-----CCeEEEccchhhHHHhccccCCccHHHHHHHHHHhhcCCCCeEEEEeCCHHHHHHHh-ccCcc--
Confidence 112223332 35678886532 12222333322 37999999999999999998 33211
Q ss_pred cccccccCCCCCCCCCcHHHHHHHH-HHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhc
Q 024067 193 HKEFLRLGGARFSAADAASAWKEKF-RIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQ 260 (273)
Q Consensus 193 ~~~~y~~~~~~~~~~d~~e~~~~rl-~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~ 260 (273)
+.....+.+|+ +.|.+ +.+.| .+.++.||+++++++| ++|.+.|...
T Consensus 169 --------------E~~~~e~~~rv~~~y~~----la~~~--~~~~~vIDa~~sieeV-~~I~~~l~~~ 216 (223)
T 3ld9_A 169 --------------EFADMEFYYRVRDGFYD----IAKKN--PHRCHVITDKSETYDI-DDINFVHLEV 216 (223)
T ss_dssp -----------------CHHHHHHHHHHHHH----HHHHC--TTTEEEEESSCSSSCC-CHHHHHHHHH
T ss_pred --------------ccchHHHHHHHHHHHHH----HHHHC--CCCEEEEcCCCCHHHH-HHHHHHHHHH
Confidence 11112344444 34433 22223 2368999999999999 9998888653
No 61
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=99.57 E-value=1.3e-14 Score=119.38 Aligned_cols=109 Identities=20% Similarity=0.234 Sum_probs=73.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccC
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~ 141 (273)
++..|+|+|+|||||||+++.|++.+|+.++++|+++++.... ...++. ........+.+...+...+..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~---- 79 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLY-DGYDEE-----YDCPILDEDRVVDELDNQMRE---- 79 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTCE-EEEETT-----TTEEEECHHHHHHHHHHHHHH----
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHHHHhhcchh-hhhhhh-----hcCccCChHHHHHHHHHHHhc----
Confidence 4568999999999999999999999999999999998865110 000000 001112334445555554443
Q ss_pred CcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCC
Q 024067 142 GESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESE 188 (273)
Q Consensus 142 ~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (273)
.++|+|+........ ..++.+|+|+|+.+++.+|+.+|.
T Consensus 80 --g~~vv~~~~~~~~~~------~~~~~vi~L~~~~e~l~~R~~~r~ 118 (180)
T 3iij_A 80 --GGVIVDYHGCDFFPE------RWFHIVFVLRTDTNVLYERLETRG 118 (180)
T ss_dssp --CCEEEECSCCTTSCG------GGCSEEEEEECCHHHHHHHHHHTT
T ss_pred --CCEEEEechhhhcch------hcCCEEEEEECCHHHHHHHHHHcC
Confidence 467788654322110 127899999999999999999886
No 62
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=99.57 E-value=1.5e-15 Score=134.93 Aligned_cols=163 Identities=15% Similarity=0.098 Sum_probs=99.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh-CCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccC
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLL-EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~-g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~ 141 (273)
+..|+|+|+|||||||+++.|++++ |+.+|++| .+++.+...+. +.. ..+...+.....+.....+...+... .
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D-~~r~~~~~~~~-g~~-~~~~~~~~~~~~~~~~~~~~~~l~~~--~ 76 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRD-DYRQSIMAHEE-RDE-YKYTKKKEGIVTGMQFDTAKSILYGG--D 76 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHH-HHHHHHTTSCC-CC----CCHHHHHHHHHHHHHHHHHHTTSC--T
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcEEeccc-HHHHHhccCCc-ccc-cccchhhhhHHHHHHHHHHHHHHhhc--c
Confidence 4689999999999999999999985 99999998 55554432111 000 00000000001122233333333110 2
Q ss_pred CcceEEEeCCCCCHHHHHHHHhh----CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHH
Q 024067 142 GESGFILDGIPRTRIQAEILDQI----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKF 217 (273)
Q Consensus 142 ~~~g~IlDg~P~~~~qa~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl 217 (273)
.+.++|+|+++.+..+.+.|... ..+..+|+|++|.+++.+|+..|..+. ..++.+++++
T Consensus 77 ~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~----------------~~~e~i~~~~ 140 (301)
T 1ltq_A 77 SVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTKA----------------VPIDVLRSMY 140 (301)
T ss_dssp TCCEEEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHCGGGC----------------CCHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHHhccCCC----------------CCHHHHHHHH
Confidence 35789999999988777666533 345589999999999999999887422 2367888888
Q ss_pred HHHHHhhHHHHHHH--Hh-cCcEEEEeCCCChhH
Q 024067 218 RIYAEQGKSLEDYY--SK-QRKLLNFQVAAAPGE 248 (273)
Q Consensus 218 ~~y~~~~~~l~~~y--~~-~~~~~~id~~~s~~e 248 (273)
+.|+..... ..| .. ....+.+|..+++++
T Consensus 141 ~~~~~~~~~--~~~~~~~~~~~~i~iD~dgtl~~ 172 (301)
T 1ltq_A 141 KSMREYLGL--PVYNGTPGKPKAVIFDVDGTLAK 172 (301)
T ss_dssp HHHHHHHTC--CCCCCCTTSCEEEEEETBTTTBC
T ss_pred HHHhcccCC--cceeccccccceEEEeCCCCccc
Confidence 888654221 101 11 123566776665444
No 63
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=99.56 E-value=8.4e-14 Score=115.94 Aligned_cols=170 Identities=11% Similarity=0.069 Sum_probs=93.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcc-cCC
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGY-YRG 142 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~-~~~ 142 (273)
+.|+|+|+|||||||+++.|+++++..++.... .+..+ +..+...+...+.......+..++.... ...
T Consensus 1 ~~I~i~G~~GsGKsT~~~~L~~~l~~~~~~e~~-------~~~~~---~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 70 (205)
T 2jaq_A 1 MKIAIFGTVGAGKSTISAEISKKLGYEIFKEPV-------EENPY---FEQYYKDLKKTVFKMQIYMLTARSKQLKQAKN 70 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHCCEEECCCG-------GGCTT---HHHHTTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred CEEEEECCCccCHHHHHHHHHHhcCCcEEcccc-------cccHH---HHHHHhCccccchhHHHHHHHHHHHHHHHhhc
Confidence 478999999999999999999999987764210 00010 1111100000001111112222221100 011
Q ss_pred cceEEEeCCCCCHH--HH-----------------HHHH----hh-------CCCceEEEEccCHHHHHHHHhcCCcCCC
Q 024067 143 ESGFILDGIPRTRI--QA-----------------EILD----QI-------VDVDLVINFKSIEDQLVKRNLESEAFSP 192 (273)
Q Consensus 143 ~~g~IlDg~P~~~~--qa-----------------~~l~----~~-------~~~d~vI~L~~~~e~l~~Rl~~R~~~~~ 192 (273)
...+|+|.++.+.. +. ..++ .+ ..||++|+|++|++++.+|+..|.. +
T Consensus 71 ~~~vi~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~L~~~~e~~~~Rl~~R~r-~- 148 (205)
T 2jaq_A 71 LENIIFDRTLLEDPIFMKVNYDLNNVDQTDYNTYIDFYNNVVLENLKIPENKLSFDIVIYLRVSTKTAISRIKKRGR-S- 148 (205)
T ss_dssp --CEEEESCTTTHHHHHHHHHHTTSSCHHHHHHHHHHHHHTTTTC------CCCCSEEEEEECCHHHHHHHHHHHTC-H-
T ss_pred cCCEEEEeccchhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhcccccCCCCCEEEEEeCCHHHHHHHHHHcCC-h-
Confidence 23599999876411 11 0111 11 3589999999999999999987641 1
Q ss_pred cccccccCCCCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhc
Q 024067 193 HKEFLRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQ 260 (273)
Q Consensus 193 ~~~~y~~~~~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~ 260 (273)
+ ....+ +.+.+++..+. ..+.++|.+....+.||+++++++++++|...+...
T Consensus 149 ----~-------~~~~~-~~~~~~l~~~~---~~~~~~~~~~~~~~~Id~~~~~~~v~~~I~~~l~~~ 201 (205)
T 2jaq_A 149 ----E-------ELLIG-EEYWETLNKNY---EEFYKQNVYDFPFFVVDAELDVKTQIELIMNKLNSI 201 (205)
T ss_dssp ----H-------HHHSC-HHHHHHHHHHH---HHHHHHHTTTSCEEEEETTSCHHHHHHHHHHHHHHC
T ss_pred ----h-------hhcCc-HHHHHHHHHHH---HHHHHHccccCcEEEEECCCCHHHHHHHHHHHHHHh
Confidence 0 00001 12334443332 234455653345788999999999999999998653
No 64
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=99.55 E-value=1e-13 Score=115.44 Aligned_cols=168 Identities=11% Similarity=0.076 Sum_probs=100.4
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHH----HCCCCCCHHHHHH------
Q 024067 60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAV----NEGKLVPEDVIFA------ 129 (273)
Q Consensus 60 ~~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l----~~g~~~~~~~~~~------ 129 (273)
+.+++.|+|+|++||||||+++.|++. |+++|++|+++++.. ++.+ ..+.+.+ .+|. +....+..
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d~~~~~~~-~~~~--~~i~~~~~~~~~~g~-i~~~~l~~~~~~~~ 79 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVAALLRSW-GYPVLDLDALAARAR-ENKE--EELKRLFPEAVVGGR-LDRRALARLVFSDP 79 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHHHHHHHHH-HHTH--HHHHHHCGGGEETTE-ECHHHHHHHHTTSH
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHC-CCEEEcccHHHHHhc-CChH--HHHHHHHHHHHhCCC-cCHHHHHHHHhCCH
Confidence 456789999999999999999999998 999999999987654 2222 2222222 1121 22221111
Q ss_pred --------HHH-----HHHHhcccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccc
Q 024067 130 --------LLS-----KRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEF 196 (273)
Q Consensus 130 --------ll~-----~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~ 196 (273)
++. +.+......+...+|+|+ |..... .+. ..+|.+|+|+++.+++.+|+..|...
T Consensus 80 ~~~~~l~~~~~~~i~~~~i~~~~~~g~~~vi~d~-~~l~~~--~~~--~~~d~~i~l~~~~e~~~~R~~~R~~~------ 148 (203)
T 1uf9_A 80 ERLKALEAVVHPEVRRLLMEELSRLEAPLVFLEI-PLLFEK--GWE--GRLHGTLLVAAPLEERVRRVMARSGL------ 148 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCCSEEEEEC-TTTTTT--TCG--GGSSEEEEECCCHHHHHHHHHTTTCC------
T ss_pred HHHHHHHHHhChHHHHHHHHHhhhcCCCEEEEEe-cceecc--Cch--hhCCEEEEEECCHHHHHHHHHHcCCC------
Confidence 111 112111011245678886 322110 011 24689999999999999999877411
Q ss_pred cccCCCCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhcC
Q 024067 197 LRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQH 261 (273)
Q Consensus 197 y~~~~~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~~ 261 (273)
+.+.+.+++... .+...++...+ +.||++++++++.++|...+....
T Consensus 149 ------------~~~~~~~~i~~~----~~~~~~~~~ad--~vId~~~~~~~~~~~i~~~~~~~~ 195 (203)
T 1uf9_A 149 ------------SREEVLARERAQ----MPEEEKRKRAT--WVLENTGSLEDLERALKAVLAELT 195 (203)
T ss_dssp ------------TTHHHHHHHTTS----CCHHHHHHHCS--EEECCSSHHHHHHHHHHHHHHSCC
T ss_pred ------------CHHHHHHHHHHC----CChhHHHHhCC--EEEECCCCHHHHHHHHHHHHHHHH
Confidence 112344444331 11223334444 468888899999999999987543
No 65
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=99.54 E-value=3e-14 Score=116.07 Aligned_cols=163 Identities=12% Similarity=0.150 Sum_probs=90.2
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCC
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRG 142 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~ 142 (273)
+..|+|+|+|||||||+++.|++.++.++++.|+++++... ..++...+. .|.....+....++.. +..
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~id~d~~~~~~~~--~~i~~i~~~---~g~~~~~~~~~~~l~~-l~~----- 72 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTG--ADVGWVFDL---EGEEGFRDREEKVINE-LTE----- 72 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHHT--SCHHHHHHH---HHHHHHHHHHHHHHHH-HHT-----
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEeccHHHHHHhC--cCHHHHHHH---HhHHHHHHHHHHHHHH-HHh-----
Confidence 56799999999999999999999999999999988875431 122211110 1110011111122222 221
Q ss_pred cceEEEe---CCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCc-HHHHHHHHH
Q 024067 143 ESGFILD---GIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADA-ASAWKEKFR 218 (273)
Q Consensus 143 ~~g~IlD---g~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~-~e~~~~rl~ 218 (273)
..++++. +.+......+.|.. ++++++|+++++++.+|+..|...+ ....++. .+.+...+.
T Consensus 73 ~~~~v~~~~~~~~~~~~~~~~l~~---~~~~i~l~~~~~~l~~R~~~r~~r~-----------~~~~~~~~~~~~~~~~~ 138 (173)
T 1kag_A 73 KQGIVLATGGGSVKSRETRNRLSA---RGVVVYLETTIEKQLARTQRDKKRP-----------LLHVETPPREVLEALAN 138 (173)
T ss_dssp SSSEEEECCTTGGGSHHHHHHHHH---HSEEEECCCCHHHHHSCC------C-----------CSSSSCCCHHHHHHHHH
T ss_pred CCCeEEECCCeEEecHHHHHHHHh---CCEEEEEeCCHHHHHHHHhCCCCCC-----------CCCCCCchHHHHHHHHH
Confidence 2456654 34444444444442 4689999999999999998774211 0011222 344443332
Q ss_pred HHHHhhHHHHHHHHhcCcEEEEeCC-CChhHHHHHHHHHHH
Q 024067 219 IYAEQGKSLEDYYSKQRKLLNFQVA-AAPGETWQGLLSALH 258 (273)
Q Consensus 219 ~y~~~~~~l~~~y~~~~~~~~id~~-~s~~ev~~~I~~~l~ 258 (273)
.. ..+|.... .+.||++ .++++++++|...+.
T Consensus 139 ~r-------~~~~~~~a-~~~id~~~~~~~~~~~~i~~~l~ 171 (173)
T 1kag_A 139 ER-------NPLYEEIA-DVTIRTDDQSAKVVANQIIHMLE 171 (173)
T ss_dssp HH-------HHHHHHHC-SEEC-----CHHHHHHHHHHHHC
T ss_pred HH-------HHHHHhhC-CEEEECCCCCHHHHHHHHHHHHH
Confidence 21 13454433 3667877 799999999998875
No 66
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=99.54 E-value=1.2e-13 Score=117.14 Aligned_cols=168 Identities=11% Similarity=0.021 Sum_probs=111.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCC-----CCCH-------------
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGK-----LVPE------------- 124 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~-----~~~~------------- 124 (273)
+-.|.|+|++||||||+++.|++ +|+++|++|.+.++...++++....|.+.+..+. .+..
T Consensus 9 ~~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d~~~ 87 (210)
T 4i1u_A 9 MYAIGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSDEDA 87 (210)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHCHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCCHHH
Confidence 45688999999999999999998 9999999999999888887777777776664322 2222
Q ss_pred -----HHHHHHHHHHHHhcc-cCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccc
Q 024067 125 -----DVIFALLSKRLEEGY-YRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLR 198 (273)
Q Consensus 125 -----~~~~~ll~~~l~~~~-~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~ 198 (273)
.++...+.+.+.... ..+..-+|+|. |.-.+... +. ..+|.+|+++||+++.++|+..|..
T Consensus 88 ~~~L~~i~HP~I~~~~~~~~~~~~~~~vv~d~-pLL~E~~~-~~--~~~D~vi~V~ap~e~r~~Rl~~Rdg--------- 154 (210)
T 4i1u_A 88 RRRLEAITHPLIRAETEREARDAQGPYVIFVV-PLLVESRN-WK--ARCDRVLVVDCPVDTQIARVMQRNG--------- 154 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCSSSEEEEC-TTCTTCHH-HH--HHCSEEEEEECCHHHHHHHHHHHHC---------
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCCCEEEEEE-ecccccCC-cc--ccCCeEEEEECCHHHHHHHHHhcCC---------
Confidence 122222222222110 01233467775 44333111 11 1478999999999999999998852
Q ss_pred cCCCCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCC-CChhHHHHHHHHHHHh
Q 024067 199 LGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVA-AAPGETWQGLLSALHL 259 (273)
Q Consensus 199 ~~~~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~-~s~~ev~~~I~~~l~~ 259 (273)
-+++.+.+|+... .+..+++...+ +.||++ ++++++.++|...+..
T Consensus 155 ---------~s~eea~~ri~~Q----~~~eek~~~AD--~VIdN~~gsle~l~~qV~~l~~~ 201 (210)
T 4i1u_A 155 ---------FTREQVEAIIARQ----ATREARLAAAD--DVIVNDAATPDALAVQVDALHQR 201 (210)
T ss_dssp ---------CCHHHHHHHHHHS----CCHHHHHHTCS--EEEECSSCCHHHHHHHHHHHHHH
T ss_pred ---------CCHHHHHHHHHHc----CChHHHHHhCC--EEEECCCCCHHHHHHHHHHHHHH
Confidence 1345666666432 24455555555 457888 8999999999888764
No 67
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=99.53 E-value=3.6e-13 Score=114.83 Aligned_cols=171 Identities=12% Similarity=0.073 Sum_probs=109.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCC-CCCHHHHH-----------H
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGK-LVPEDVIF-----------A 129 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~-~~~~~~~~-----------~ 129 (273)
+++.|+|.|++||||||+++.|++.++.... +++ +...++++|+.|++++.+.. ........ +
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~~~~----~~~-ep~~~t~~g~~ir~~l~~~~~~~~~~~~~llf~a~R~~~~~ 78 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQPNCK----LLK-FPERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWEIVD 78 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCSSEE----EEE-SSCTTSHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHTTHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccce----EEE-ecCCCChHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999999999987322 232 23357899999999998654 23332211 1
Q ss_pred HHHHHHHhcccCCcceEEEeCCCCC--HHH---------HHHHHh----hCCCceEEEE-ccCHHHHHHHHhcCCcCCCc
Q 024067 130 LLSKRLEEGYYRGESGFILDGIPRT--RIQ---------AEILDQ----IVDVDLVINF-KSIEDQLVKRNLESEAFSPH 193 (273)
Q Consensus 130 ll~~~l~~~~~~~~~g~IlDg~P~~--~~q---------a~~l~~----~~~~d~vI~L-~~~~e~l~~Rl~~R~~~~~~ 193 (273)
.+...+.. +..+|.|.|..+ ..| .+.+.. ...||++|+| ++|++++.+|+..+. +
T Consensus 79 ~I~paL~~-----g~~VI~DRy~~S~~ayq~~~~l~~~~~~~l~~~~~~~~~PDlti~L~dv~pe~~~~R~~~~~-d--- 149 (216)
T 3tmk_A 79 KIKKDLLE-----GKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFGD-E--- 149 (216)
T ss_dssp HHHHHHHT-----TCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECSCCSCGGGCCSSSC-C---
T ss_pred HHHHHHHc-----CCEEEEeccHhHHHHHHHhcCCCHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHhccCc-c---
Confidence 22233332 456788865332 111 122222 1469999999 999999988864322 1
Q ss_pred ccccccCCCCCCCCCcHHHHHHHHH-HHHHhhHHHHHHHHhcCcEEEEe-CCCChhHHHHHHHHHHHhcC
Q 024067 194 KEFLRLGGARFSAADAASAWKEKFR-IYAEQGKSLEDYYSKQRKLLNFQ-VAAAPGETWQGLLSALHLQH 261 (273)
Q Consensus 194 ~~~y~~~~~~~~~~d~~e~~~~rl~-~y~~~~~~l~~~y~~~~~~~~id-~~~s~~ev~~~I~~~l~~~~ 261 (273)
+.+ . ..+.++++ .|.+....... | ....++.|| +++++++|.++|.+.|....
T Consensus 150 -----------r~E-~-~~f~~rvr~~Y~~la~~~~~-~-~~~~~~vID~a~~s~eeV~~~I~~~i~~~l 204 (216)
T 3tmk_A 150 -----------RYE-T-VKFQEKVKQTFMKLLDKEIR-K-GDESITIVDVTNKGIQEVEALIWQIVEPVL 204 (216)
T ss_dssp -----------TTC-C-HHHHHHHHHHHHHHHHHHHH-T-TCCSEEEEECTTCCHHHHHHHHHHHHHHHH
T ss_pred -----------ccc-H-HHHHHHHHHHHHHHHHhccc-c-CCCCEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 112 2 24555554 34433322111 1 235699999 89999999999999988654
No 68
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=99.50 E-value=1.6e-13 Score=115.26 Aligned_cols=171 Identities=13% Similarity=0.057 Sum_probs=102.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCC-CeechhHHHHHHccC---CCh----HHHHHHHHHHCCCCCCHH-------
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEV-PHISMGSLVRQELSP---RSA----LYKQIANAVNEGKLVPED------- 125 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g~-~~is~~dllr~~~~~---~~~----~g~~i~~~l~~g~~~~~~------- 125 (273)
.+++.|+|+|||||||||+++.|++.++- .+.++.+..|+.... +.. ..+.+...+.+|..+...
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFLEFDKYANNFY 89 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHHcCCCEEeHHhCCCee
Confidence 46788999999999999999999999853 333333333321100 000 012344444445443210
Q ss_pred -HHHHHHHHHHHhcccCCcceEEEeCCCCCHHHHHHHHhhCC--CceEEEEc-cCHHHHHHHHhcCCcCCCcccccccCC
Q 024067 126 -VIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVD--VDLVINFK-SIEDQLVKRNLESEAFSPHKEFLRLGG 201 (273)
Q Consensus 126 -~~~~ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~--~d~vI~L~-~~~e~l~~Rl~~R~~~~~~~~~y~~~~ 201 (273)
.....+...+.. +.++|+|+.+....+ +..... ..++|+|+ ++.+++.+|+..|..
T Consensus 90 ~~~~~~i~~~l~~-----g~~vi~d~~~~~~~~---l~~~~~~~~~~~i~l~~~s~e~l~~Rl~~R~~------------ 149 (204)
T 2qor_A 90 GTLKSEYDLAVGE-----GKICLFEMNINGVKQ---LKESKHIQDGIYIFVKPPSIDILLGRLKNRNT------------ 149 (204)
T ss_dssp EEEHHHHHHHHHT-----TCEEEEECCHHHHHH---HHHCSSCSCCEEEEEECSCHHHHHHHHHTCTT------------
T ss_pred cCCHHHHHHHHHc-----CCeEEEEECHHHHHH---HHHhcCCCCeEEEEEcCCCHHHHHHHHHHcCC------------
Confidence 011233344443 478999987654433 322222 23789998 999999999988752
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhcCC
Q 024067 202 ARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQHM 262 (273)
Q Consensus 202 ~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~~~ 262 (273)
++++.+.+|+..++....+. |....+ .+.+| + ++++++++|.+.|.....
T Consensus 150 ------~~~~~i~~rl~~~~~~~~~~--~~~~~d-~vi~n-~-~~e~~~~~i~~~i~~~~~ 199 (204)
T 2qor_A 150 ------EKPEEINKRMQELTREMDEA--DKVGFN-YFIVN-D-DLARTYAELREYLLGSYP 199 (204)
T ss_dssp ------SCHHHHHHHHHHHHHHHHHH--HHHTCS-EEEEC-S-SHHHHHHHHHHHHHHHCT
T ss_pred ------CCHHHHHHHHHHHHHHHHHh--hhccCc-EEEEC-c-CHHHHHHHHHHHHHHHhh
Confidence 23567888887765433221 333333 34344 4 899999999999986543
No 69
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=99.50 E-value=1.2e-13 Score=118.78 Aligned_cols=174 Identities=13% Similarity=0.138 Sum_probs=102.3
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHc----cCCCh------HHHHHH--------------HH
Q 024067 60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQEL----SPRSA------LYKQIA--------------NA 115 (273)
Q Consensus 60 ~~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~----~~~~~------~g~~i~--------------~~ 115 (273)
+.++.+|+|+|++||||||+++.|++++|+++++.|++++... ..+.+ +.+.+. ++
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i 92 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAATYMALKNQLGVEEVEALLALLDQHPISFGRSETGDQLV 92 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHSCCEEEEETTTEEEE
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCeeEcceeeeeccCCCcccHHHHHHHHHhccccccccCCccceE
Confidence 3467899999999999999999999999999999999998632 12222 111111 11
Q ss_pred HHCCCCC----CHHHHHH-------------HHHHHHHhcccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHH
Q 024067 116 VNEGKLV----PEDVIFA-------------LLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIED 178 (273)
Q Consensus 116 l~~g~~~----~~~~~~~-------------ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e 178 (273)
+..|+.+ ..+.+.. .+.+.+... ..+.++|+||+.... ..+ ..++++|+|+++++
T Consensus 93 ~~~G~~~~r~l~~~~v~~~~~~~~~~~~vr~~~~~~~~~~--~~~~~~v~~g~~~~~---~~l---~~~d~vi~L~a~~e 164 (236)
T 1q3t_A 93 FVGDVDITHPIRENEVTNHVSAIAAIPEVREKLVSLQQEI--AQQGGIVMDGRDIGT---VVL---PQAELKIFLVASVD 164 (236)
T ss_dssp EETTEEESSSSCSHHHHHHHHHHHTSHHHHHHHHHHHHHH--HTTSCEEEECSSCSS---SSG---GGCSEEEEEECCHH
T ss_pred eECCcCchhhhccHHHHHHHHHHccCHHHHHHHHHHHHHh--cccCCEEEECCcchh---hhc---cCCCEEEEEECCHH
Confidence 1234322 2222221 122211111 124689999986531 011 24689999999999
Q ss_pred HHHHHHh----cCCcCCCcccccccCCCCCCCCCcHHHHHHHHHH--HHHhhHHHHHHHHhcCcEEEEeCCC-ChhHHHH
Q 024067 179 QLVKRNL----ESEAFSPHKEFLRLGGARFSAADAASAWKEKFRI--YAEQGKSLEDYYSKQRKLLNFQVAA-APGETWQ 251 (273)
Q Consensus 179 ~l~~Rl~----~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~--y~~~~~~l~~~y~~~~~~~~id~~~-s~~ev~~ 251 (273)
++.+|+. .|.. ..+.+.+.+++.. +......+..+|.. ...+.||+++ +++++++
T Consensus 165 ~~~~R~~~~~~~R~~-----------------~~~~e~~~~~i~~R~~~~~~~~~~p~~~~-~d~~vId~~~~s~eev~~ 226 (236)
T 1q3t_A 165 ERAERRYKENIAKGI-----------------ETDLETLKKEIAARDYKDSHRETSPLKQA-EDAVYLDTTGLNIQEVVE 226 (236)
T ss_dssp HHHHHHHHHHHHTTC-----------------CCCHHHHHHHHHHHHHHHTTCSSSCCSCC-TTCEEEECSSCCHHHHHH
T ss_pred HHHHHHHHHHHhcCC-----------------CCCHHHHHHHHHHHhhhhhhccccccccc-CCEEEEcCCCCCHHHHHH
Confidence 9999973 3331 1123344444432 21111111112322 2246789885 9999999
Q ss_pred HHHHHHHh
Q 024067 252 GLLSALHL 259 (273)
Q Consensus 252 ~I~~~l~~ 259 (273)
+|...+..
T Consensus 227 ~I~~~l~~ 234 (236)
T 1q3t_A 227 KIKAEAEK 234 (236)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998864
No 70
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=99.48 E-value=1.7e-12 Score=108.52 Aligned_cols=163 Identities=15% Similarity=0.117 Sum_probs=96.5
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHcc----CCCh--HHHHHHHHH-----------------HCCCC
Q 024067 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELS----PRSA--LYKQIANAV-----------------NEGKL 121 (273)
Q Consensus 65 ~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~----~~~~--~g~~i~~~l-----------------~~g~~ 121 (273)
.|.|+|++||||||+++.|++.+|+++++.|++.+.... .+.+ ....+.+.+ ..|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 83 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRAAAFLALRAGVDPGDEEGLLALLEGLGVRLLAQAEGNRVLADGED 83 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHTTCEEECCTTCCEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccchHHHhhhhhhHhcCCCCCCHHHHHHHHHhCceeeeecCCCceEEECCee
Confidence 789999999999999999999999999999999876431 1111 001121111 12322
Q ss_pred CCH----HHH-------------HHHHHHHHHhcccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHH
Q 024067 122 VPE----DVI-------------FALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRN 184 (273)
Q Consensus 122 ~~~----~~~-------------~~ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl 184 (273)
++. +.+ ...+...+... . .++|+||.... . . ....+|++|+|++|++++.+|+
T Consensus 84 v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~-~~~vi~g~~~~-~---~--~~~~~d~~i~l~a~~e~~~~R~ 153 (208)
T 3ake_A 84 LTSFLHTPEVDRVVSAVARLPGVRAWVNRRLKEV---P-PPFVAEGRDMG-T---A--VFPEAAHKFYLTASPEVRAWRR 153 (208)
T ss_dssp CGGGSSSHHHHHHHHHHHTCHHHHHHHHHHHHHS---C-SCEEEEESSCC-C---C--CCTTCSEEEEEECCHHHHHHHH
T ss_pred CchhhChHHHHHHHHHhcccHHHHHHHHHHHHHh---c-CCEEEEcccee-E---E--EecCCcEEEEEECCHHHHHHHH
Confidence 221 111 11111222211 2 68999986432 0 0 0124789999999999999999
Q ss_pred hcCCcCCCcccccccCCCCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCC-ChhHHHHHHHHHHH
Q 024067 185 LESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAA-APGETWQGLLSALH 258 (273)
Q Consensus 185 ~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~-s~~ev~~~I~~~l~ 258 (273)
..|.. .+.+.+.+++..-..... .++......+.||+++ +++++.++|.+.+.
T Consensus 154 ~~r~~------------------~~~~~~~~~~~~R~~~~~---~~~~~~ad~~~Id~~~~~~ee~~~~I~~~~~ 207 (208)
T 3ake_A 154 ARERP------------------QAYEEVLRDLLRRDERDK---AQSAPAPDALVLDTGGMTLDEVVAWVLAHIR 207 (208)
T ss_dssp HHTSS------------------SCHHHHHHHHHHHHHTC-----CCCCCTTCEEEETTTSCHHHHHHHHHHHHH
T ss_pred Hhhcc------------------cCHHHHHHHHHHHHHHHh---hcccCCCCEEEEECCCCCHHHHHHHHHHHHh
Confidence 87742 112334444432111100 0112223357899886 99999999998774
No 71
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=99.47 E-value=2.5e-14 Score=121.09 Aligned_cols=171 Identities=12% Similarity=0.144 Sum_probs=99.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHH----ccCCChHHHHHHHH-------H-----------HCCC
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQE----LSPRSALYKQIANA-------V-----------NEGK 120 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~----~~~~~~~g~~i~~~-------l-----------~~g~ 120 (273)
++.|+|+|+|||||||+++.|++.+|++++++|++++.. ...+. ++.+.++ + ..|.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~f~~~~~~g~~i~~~g~ 80 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRALTYKYLKLNK--TEDFAKLVDQTTLDLTYKADKGQCVILDNE 80 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTS--CSCHHHHHHTCCEEEEECTTCCEEEEETTE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCceecCChHHHHHHHHHHHhhh--hHHHHHHHHhccccccccccccceEEeCCc
Confidence 568999999999999999999999999999999998853 22221 2233333 1 2343
Q ss_pred CCCHH----HHHHH---------HHHHHHh--cccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHh
Q 024067 121 LVPED----VIFAL---------LSKRLEE--GYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNL 185 (273)
Q Consensus 121 ~~~~~----~~~~l---------l~~~l~~--~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~ 185 (273)
.++.+ .+... +.+.+.. .....+.++|+||- .... . -...++++|+|++|.+++.+|+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~~~~~~~~~~~vi~g~--~~~~-~---~~~~~~~vi~l~a~~e~~~~R~~ 154 (219)
T 2h92_A 81 DVTDFLRNNDVTQHVSYVASKEPVRSFAVKKQKELAAEKGIVMDGR--DIGT-V---VLPDADLKVYMIASVEERAERRY 154 (219)
T ss_dssp ECGGGSSSSHHHHHHHHHHTSHHHHHHHHHHHHHHHTTCCEEEEES--SCCC-C---CCTTCSEEEEEECCHHHHHHHHH
T ss_pred cchhhcCcHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcEEEEcC--Cccc-e---ecCCCCEEEEEECCHHHHHHHHH
Confidence 32221 11111 1111110 00112468999983 1100 0 11246899999999999999975
Q ss_pred c----CCcCCCcccccccCCCCCCCCCcHHHHHHHHHHH--HHhhHHHHHHHHhcCcEEEEeCCC-ChhHHHHHHHHHHH
Q 024067 186 E----SEAFSPHKEFLRLGGARFSAADAASAWKEKFRIY--AEQGKSLEDYYSKQRKLLNFQVAA-APGETWQGLLSALH 258 (273)
Q Consensus 186 ~----R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~y--~~~~~~l~~~y~~~~~~~~id~~~-s~~ev~~~I~~~l~ 258 (273)
. |.. .++.+.+.+++..- .+....+..+|.. ...+.||+++ ++++++++|.+.+.
T Consensus 155 ~~~~~r~~-----------------~~~~e~~~~~~~~r~~~d~~r~~~~~~~~-~d~~~Id~~~~~~ee~~~~I~~~l~ 216 (219)
T 2h92_A 155 KDNQLRGI-----------------ESNFEDLKRDIEARDQYDMNREISPLRKA-DDAVTLDTTGKSIEEVTDEILAMVS 216 (219)
T ss_dssp HHHHHTTC-----------------CCCHHHHHHHHHHHHHHHHHCSSSCSCCC-TTCEEEECTTCCHHHHHHHHHHHHH
T ss_pred HHHHhcCc-----------------ccCHHHHHHHHHHHHHhhhhhhccccccC-CCeEEEECCCCCHHHHHHHHHHHHh
Confidence 3 221 12345566655321 1111111123332 2246788875 99999999999886
Q ss_pred h
Q 024067 259 L 259 (273)
Q Consensus 259 ~ 259 (273)
.
T Consensus 217 ~ 217 (219)
T 2h92_A 217 Q 217 (219)
T ss_dssp T
T ss_pred c
Confidence 4
No 72
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=99.44 E-value=5.6e-14 Score=122.10 Aligned_cols=174 Identities=13% Similarity=0.069 Sum_probs=100.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCC----------eechhHHHHHHccCCChHHHHHHHHHHCCCCC-------C
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVP----------HISMGSLVRQELSPRSALYKQIANAVNEGKLV-------P 123 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~----------~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~-------~ 123 (273)
.++++|.|+|+|||||||+|+.|++.+|++ ++++|++++.. . ...+.. ...|... .
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~-~-----~~~~~~-~~~g~~~f~~~~~~d 92 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVL-T-----SEQKAK-ALKGQFNFDHPDAFD 92 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCC-C-----HHHHHH-HHTTCSCTTSGGGBC
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccccc-C-----hhhhhh-hccCCCCCCCcchhh
Confidence 457889999999999999999999999988 79999988631 1 111111 1223222 1
Q ss_pred HHHHHHHHHHHHHhcc--------------------cCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHH
Q 024067 124 EDVIFALLSKRLEEGY--------------------YRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKR 183 (273)
Q Consensus 124 ~~~~~~ll~~~l~~~~--------------------~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~R 183 (273)
.+.+...|.... .+. ......+|+||.+.... .. +.. .+|++|+|+++++++++|
T Consensus 93 ~~~l~~~L~~l~-~~~~v~~~~~d~~~~~~~~~~~~~~~~~~vIveG~~~~~~-~~-~~~--~~d~vi~l~~~~e~~~~R 167 (252)
T 1uj2_A 93 NELILKTLKEIT-EGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYS-QE-VRD--LFQMKLFVDTDADTRLSR 167 (252)
T ss_dssp HHHHHHHHHHHH-TTCCEEEEEEETTTTEEEEEEEEECCCSEEEEECTTTTSS-HH-HHH--HCSEEEEEECCHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCeeecCccccccccCCCceeeeCCCcEEEEeeeccccC-HH-HHH--hcCeeEEEeCCHHHHHHH
Confidence 122334443322 110 01245799999664211 11 221 257999999999999999
Q ss_pred HhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHHHHHH-hhH-HHHHHHHhcCcEE--EEeCCCChhHHHHHHHHHHHh
Q 024067 184 NLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAE-QGK-SLEDYYSKQRKLL--NFQVAAAPGETWQGLLSALHL 259 (273)
Q Consensus 184 l~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~y~~-~~~-~l~~~y~~~~~~~--~id~~~s~~ev~~~I~~~l~~ 259 (273)
+..|.... + ..+.+.+.+++..... ... .+..++...+.++ .+|++.++++++++|...+..
T Consensus 168 ~~~R~~~~-------------r-g~~~e~i~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~id~~~s~e~v~~~I~~~l~~ 233 (252)
T 1uj2_A 168 RVLRDISE-------------R-GRDLEQILSQYITFVKPAFEEFCLPTKKYADVIIPRGADNLVAINLIVQHIQDILNG 233 (252)
T ss_dssp HHHHHHHH-------------S-CCCHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEETGGGCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhh-------------h-CCCHHHHHHHHHHhccHHHHHHhhhhhhcCcEEEecCCCChhHHHHHHHHHHHHHcc
Confidence 98774100 0 1124445555443111 001 0111222233333 248778999999999999875
Q ss_pred c
Q 024067 260 Q 260 (273)
Q Consensus 260 ~ 260 (273)
.
T Consensus 234 ~ 234 (252)
T 1uj2_A 234 G 234 (252)
T ss_dssp -
T ss_pred c
Confidence 4
No 73
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=99.44 E-value=1.3e-13 Score=115.84 Aligned_cols=167 Identities=12% Similarity=0.089 Sum_probs=101.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh-CCCeechhHHHHHHccCCChHHHHHHHHHHCCC-------CCCHHHHHHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLL-EVPHISMGSLVRQELSPRSALYKQIANAVNEGK-------LVPEDVIFALLS 132 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~-g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~-------~~~~~~~~~ll~ 132 (273)
.++.+|.|+|+|||||||+++.|++.+ ++.+++.|++++....- .. ...+. .+........+.
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~~~~~~--~~-------~~~~~~~~~~~~~~~~~~l~~~i~ 89 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPESEI--ET-------DKNGFLQYDVLEALNMEKMMSAIS 89 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBCCGGGS--CB-------CTTSCBCCSSGGGBCHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCccccCHhHh--hc-------cccCCChhHHHHHhHHHHHHHHHH
Confidence 356789999999999999999999999 89999999887532110 00 00000 011122223332
Q ss_pred HHHHhc---c-------cCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCC
Q 024067 133 KRLEEG---Y-------YRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGA 202 (273)
Q Consensus 133 ~~l~~~---~-------~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~ 202 (273)
..+... . ......+|+||++.-.. +.+ ...+|.+|+++++.+++.+|+..|....
T Consensus 90 ~~l~~~~~~~~~~~~~~~~~~~~vi~eg~~~~~~--~~~--~~~~d~~i~l~~~~~~~~~R~~~R~~~~----------- 154 (207)
T 2qt1_A 90 CWMESARHSVVSTDQESAEEIPILIIEGFLLFNY--KPL--DTIWNRSYFLTIPYEECKRRRSTRVYQP----------- 154 (207)
T ss_dssp HHHHHHTTSSCCC-----CCCCEEEEECTTCTTC--GGG--TTTCSEEEEEECCHHHHHHHHHHSCCSS-----------
T ss_pred HHHhCCCCCCcCCCeeecCCCCEEEEeehHHcCc--HHH--HHhcCeeEEEECCHHHHHHHHHHcCCCc-----------
Confidence 222210 0 01245789999754311 111 1357899999999999999997775211
Q ss_pred CCCCCCcHHHHH-HHHHHHHHhhHHHHHHHHhc-CcEEEEeCCCChhHHHHHHHHHHHh
Q 024067 203 RFSAADAASAWK-EKFRIYAEQGKSLEDYYSKQ-RKLLNFQVAAAPGETWQGLLSALHL 259 (273)
Q Consensus 203 ~~~~~d~~e~~~-~rl~~y~~~~~~l~~~y~~~-~~~~~id~~~s~~ev~~~I~~~l~~ 259 (273)
++..+.+. .....|. ...+.|.+. +.++.||+++++++++++|.+.+..
T Consensus 155 ----e~~~~~~~~~~~~~~~----~~~~~~~~~~~~v~~Id~~~~~eev~~~I~~~l~~ 205 (207)
T 2qt1_A 155 ----PDSPGYFDGHVWPMYL----KYRQEMQDITWEVVYLDGTKSEEDLFLQVYEDLIQ 205 (207)
T ss_dssp ----CCCTTHHHHTHHHHHH----HHHHHGGGCSSCCEEEETTSCHHHHHHHHHHHHTT
T ss_pred ----cchHHHHHHHHhHHHH----HHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHHh
Confidence 11111222 1222332 233445443 5678899999999999999998864
No 74
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=99.41 E-value=5.1e-13 Score=112.83 Aligned_cols=163 Identities=12% Similarity=0.052 Sum_probs=92.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC------CCeechhHHHHHHccCCChHH-HHHHHHHHCCCCCCHHHHHHHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE------VPHISMGSLVRQELSPRSALY-KQIANAVNEGKLVPEDVIFALLSK 133 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g------~~~is~~dllr~~~~~~~~~g-~~i~~~l~~g~~~~~~~~~~ll~~ 133 (273)
.++..|+|+|+|||||||+++.|++.++ +.+++.+. ++..+.....+. ..-...+ ..+...+..
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~-~r~~l~~~~~~~~~~r~~~~--------~~~~~~~~~ 93 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN-IRFGLNKDLGFSEADRNENI--------RRIAEVAKL 93 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH-HTTTTTTTCCSSHHHHHHHH--------HHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH-HhhhhccccCCCHHHHHHHH--------HHHHHHHHH
Confidence 3578999999999999999999999886 77787543 443332110000 0000000 001122223
Q ss_pred HHHhcccCCcceEEEeCCCCC-HHHHHHHHh----------hCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCC
Q 024067 134 RLEEGYYRGESGFILDGIPRT-RIQAEILDQ----------IVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGA 202 (273)
Q Consensus 134 ~l~~~~~~~~~g~IlDg~P~~-~~qa~~l~~----------~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~ 202 (273)
.+.. +..+|+| ++.. ....+.+.. ...|+++|+|+||++++.+|+ .|.
T Consensus 94 ~l~~-----g~~VI~d-~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R~-~r~-------------- 152 (211)
T 1m7g_A 94 FADS-----NSIAITS-FISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRD-PKG-------------- 152 (211)
T ss_dssp HHHT-----TCEEEEE-CCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSC-TTC--------------
T ss_pred HHHC-----CCEEEEe-cCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeCCHHHHHHhh-hHH--------------
Confidence 3332 3568888 5431 122333322 125689999999999999985 221
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhc-CcEEEEeCCC-ChhHHHHHHHHHHHhcCC
Q 024067 203 RFSAADAASAWKEKFRIYAEQGKSLEDYYSKQ-RKLLNFQVAA-APGETWQGLLSALHLQHM 262 (273)
Q Consensus 203 ~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~-~~~~~id~~~-s~~ev~~~I~~~l~~~~~ 262 (273)
.+.+....|......+..+|+.. ...+.||++. +++++.++|...+..++.
T Consensus 153 ---------~~~~~r~~~~~~~~~~~~~y~~~~~~~~~IDt~~~s~eev~~~I~~~l~~~~~ 205 (211)
T 1m7g_A 153 ---------LYKKAREGVIKEFTGISAPYEAPANPEVHVKNYELPVQDAVKQIIDYLDTKGY 205 (211)
T ss_dssp ---------HHHHHHHTSSSSCBTTTBCCCCCSSCSEEEECSSSCHHHHHHHHHHHHHHTTC
T ss_pred ---------HHHHHHhcchhhhhhhhhhccCCCCCeEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 11111111111111122234321 2247899998 999999999999987653
No 75
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=99.39 E-value=1.7e-11 Score=103.23 Aligned_cols=168 Identities=12% Similarity=0.082 Sum_probs=92.7
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHH-HHHHHHHHCCC-CC------------CHHHHH
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALY-KQIANAVNEGK-LV------------PEDVIF 128 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g-~~i~~~l~~g~-~~------------~~~~~~ 128 (273)
.+.|.|.|++||||||+++.||+++|+++++ +++++..... ..+. +.+...-+... .. ..+.+.
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D-~~~~~~~a~~-~g~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 83 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYNIPLYS-KELLDEVAKD-GRYSKEVLERFDEKPMNFAFIPVPAGGTTISLEQDIA 83 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTTCCEEC-HHHHHHTTCC----------------------------------CHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhCcCEEC-HHHHHHHHHh-cCCCHHHHHHHhhhchhHHHHHhccccccccccHHHH
Confidence 3589999999999999999999999999999 8888753221 1111 11111111100 00 001111
Q ss_pred HHHHHHHHhcccC--CcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCC
Q 024067 129 ALLSKRLEEGYYR--GESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSA 206 (273)
Q Consensus 129 ~ll~~~l~~~~~~--~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~ 206 (273)
....+.+..- . ...++|++|--.+ ..|.. ..-.++|||++|.+++.+|+..+..-
T Consensus 84 ~~~~~~i~~l--a~~~~~~~Vi~Gr~g~----~vl~~-~~~~~~V~L~A~~e~r~~R~~~~~~~---------------- 140 (201)
T 3fdi_A 84 IRQFNFIRKK--ANEEKESFVIVGRCAE----EILSD-NPNMISAFILGDKDTKTKRVMEREGV---------------- 140 (201)
T ss_dssp HHHHHHHHHH--HHTSCCCEEEESTTHH----HHTTT-CTTEEEEEEEECHHHHHHHHHHHHTC----------------
T ss_pred HHHHHHHHHH--HhhcCCCEEEEECCcc----hhcCC-CCCeEEEEEECCHHHHHHHHHHHhCC----------------
Confidence 2222322221 1 2367899875211 11211 11248999999999999999765310
Q ss_pred CCcHHHHHHHHHHHHHhhHHHHHHHHhc---------CcEEEEeCC-CChhHHHHHHHHHHHhc
Q 024067 207 ADAASAWKEKFRIYAEQGKSLEDYYSKQ---------RKLLNFQVA-AAPGETWQGLLSALHLQ 260 (273)
Q Consensus 207 ~d~~e~~~~rl~~y~~~~~~l~~~y~~~---------~~~~~id~~-~s~~ev~~~I~~~l~~~ 260 (273)
+.+...+++..-.+. -..||+.. ..-+.||++ .+++++.+.|...+..+
T Consensus 141 --~~~~~~~~i~~~d~~---R~~~y~~~~~~~~~~~~~~dl~Idt~~l~~eevv~~I~~~i~~~ 199 (201)
T 3fdi_A 141 --DEKTALNMMKKMDKM---RKVYHNFYCESKWGDSRTYDICIKIGKVDVDTATDMIIKYIDSR 199 (201)
T ss_dssp --CHHHHHHHHHHHHHH---HHHHHHHHCSSCTTBGGGCSEEEEESSSCHHHHHHHHHHHHHTC
T ss_pred --CHHHHHHHHHHHHHH---HHHHHHHHhCCCCCCcccCCEEEECCCCCHHHHHHHHHHHHHHh
Confidence 122344444332222 22344331 112567766 48999999999998754
No 76
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=99.39 E-value=2.4e-13 Score=118.67 Aligned_cols=84 Identities=12% Similarity=0.109 Sum_probs=51.1
Q ss_pred CCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHHHHHHh--hHHHHHHHHhcCcEEEEeCC
Q 024067 166 DVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAEQ--GKSLEDYYSKQRKLLNFQVA 243 (273)
Q Consensus 166 ~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~y~~~--~~~l~~~y~~~~~~~~id~~ 243 (273)
.||++|+|+++++++++|+.+|.... .. ....+..+.+.+++..|.+. ..+...+|.+ ..++.||++
T Consensus 174 ~pd~vi~L~~~~e~~~~Ri~~R~r~~------~~----~~~~~~~~~l~~~~~~~~~~~~v~~~y~~~~~-~~~~~Id~~ 242 (263)
T 1p5z_B 174 ELDGIIYLQATPETCLHRIYLRGRNE------EQ----GIPLEYLEKLHYKHESWLLHRTLKTNFDYLQE-VPILTLDVN 242 (263)
T ss_dssp CCSEEEEEECCHHHHHHHHHHHCCGG------GT----TCCHHHHHHHHHHHHHHHTTCCCCCSCGGGGG-SCEEEEECC
T ss_pred CCCeEEEEECCHHHHHHHHHhcCCcc------cc----CccHHHHHHHHHHHHHHHhhccchhhhhhhcc-CCEEEEECC
Confidence 69999999999999999998764210 00 00111122333333333221 0111111223 458999999
Q ss_pred CChhHHHHHHHHHHHhc
Q 024067 244 AAPGETWQGLLSALHLQ 260 (273)
Q Consensus 244 ~s~~ev~~~I~~~l~~~ 260 (273)
+++++|+++|...|...
T Consensus 243 ~~~eev~~~I~~~l~~~ 259 (263)
T 1p5z_B 243 EDFKDKYESLVEKVKEF 259 (263)
T ss_dssp SCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999999998653
No 77
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=99.37 E-value=3.2e-11 Score=103.22 Aligned_cols=171 Identities=15% Similarity=0.192 Sum_probs=95.3
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCC-Ch------HHHHHHH-HH---HCC------------
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPR-SA------LYKQIAN-AV---NEG------------ 119 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~-~~------~g~~i~~-~l---~~g------------ 119 (273)
.+.|.|.|++||||||+++.||+++|+++++ ++++++..... -+ .++.... .+ ..+
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d-~~~~~~~a~~~g~~~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELGIHFYD-DDILKLASEKSAVGEQFFRLADEKAGNNLLYRLGGGRKIDLHSKPSPN 92 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTCEEEC-HHHHHHHHHCC-------------------------------------
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcCCcEEc-HHHHHHHHHHcCCCHHHHHHHHhhccccHHHHHhcccccccccccccc
Confidence 5789999999999999999999999999999 67776543221 11 1111100 00 000
Q ss_pred -CCCCHHHHHHHHHHHHHhcccCCcceEEEeCCCCCHHHHHHHH--hhCCCceEEEEccCHHHHHHHHhcCCcCCCcccc
Q 024067 120 -KLVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILD--QIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEF 196 (273)
Q Consensus 120 -~~~~~~~~~~ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~--~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~ 196 (273)
....++.+.....+.+.+. ....++|++|.-.. ..|. .-..-.++|+|++|.+++.+|+..+...
T Consensus 93 ~~~~~~~~~f~~~~~~i~~l--a~~~~~Vi~Grggg----~vl~~~~~~~~~~~VfL~A~~e~r~~Ri~~~~~~------ 160 (223)
T 3hdt_A 93 DKLTSPENLFKFQSEVMREL--AESEPCIFVGRAAG----YVLDQDEDIERLIRIFVYTDKVKKVQRVMEVDCI------ 160 (223)
T ss_dssp -----HHHHHHHHHHHHHHH--HHHSCEEEESTTHH----HHHHHCTTCCEEEEEEEECCHHHHHHHHHHHHTC------
T ss_pred cccccHHHHHHHHHHHHHHH--HhCCCEEEEeCCcc----hhcccccCCCCeEEEEEECCHHHHHHHHHHhcCC------
Confidence 0011222223223333221 11356888865311 1221 1111248999999999999999765321
Q ss_pred cccCCCCCCCCCcHHHHHHHHHHHHHhhHHHHHHHH--------hcCcEEEEeCC-CChhHHHHHHHHHHHhc
Q 024067 197 LRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYS--------KQRKLLNFQVA-AAPGETWQGLLSALHLQ 260 (273)
Q Consensus 197 y~~~~~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~--------~~~~~~~id~~-~s~~ev~~~I~~~l~~~ 260 (273)
+.+...+++....+...+.-.+|. ..+ +.||++ .+++++.+.|...+..+
T Consensus 161 ------------~~~~a~~~I~~~d~~R~~~Y~~ytg~~~~~~~~~d--l~IdT~~l~~eevv~~I~~~i~~~ 219 (223)
T 3hdt_A 161 ------------DEERAKRRIKKIEKERKEYYKYFTGSEWHSMKNYD--LPINTTKLTLEETAELIKAYIRLK 219 (223)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHHHHSSCTTCGGGCS--EEEECTTCCHHHHHHHHHHHHHHT
T ss_pred ------------CHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccCe--EEEECCCCCHHHHHHHHHHHHHHh
Confidence 123344444443333333322221 222 567876 48999999999999865
No 78
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=99.35 E-value=4.6e-12 Score=106.03 Aligned_cols=154 Identities=14% Similarity=0.168 Sum_probs=89.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCC----CCCCHH------------
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEG----KLVPED------------ 125 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g----~~~~~~------------ 125 (273)
....|.|+|++||||||+++.|++.+|+++|++|++.++...+ ..+.+.+.+... ..+...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~~~---~~~~i~~~fG~~~~~~g~ldr~~L~~~vF~~~~~ 87 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVLEE---VKEKLVELFGGSVLEDGKVNRKKLAGIVFESREN 87 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHH---THHHHHHHHCGGGBSSSSBCHHHHHHHHTTCHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHHHHHHHHH---HHHHHHHHhChhhcCCCCcCHHHHHHHHhCCHHH
Confidence 3568899999999999999999999999999999999876543 222333333211 011111
Q ss_pred ------HHHHHHHHHHHhcccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCccccccc
Q 024067 126 ------VIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRL 199 (273)
Q Consensus 126 ------~~~~ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~ 199 (273)
+....+...+..........+|+|+ |...+. .+. ..+|.+|+++||+++.++|+...
T Consensus 88 ~~~l~~i~hP~i~~~~~~~~~~~~~~vv~d~-pll~e~--~~~--~~~d~vi~v~a~~e~r~~Rli~~------------ 150 (192)
T 2grj_A 88 LKKLELLVHPLMKKRVQEIINKTSGLIVIEA-ALLKRM--GLD--QLCDHVITVVASRETILKRNREA------------ 150 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCEEEEEEC-TTTTTT--TGG--GGCSEEEEEECCHHHHHHHCSSH------------
T ss_pred HHHHHhhhCHHHHHHHHHHHHHcCCEEEEEE-eceeec--ChH--HhCCEEEEEECCHHHHHHHHHHh------------
Confidence 1111121212110001124567774 533332 122 24689999999999999998211
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHh
Q 024067 200 GGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHL 259 (273)
Q Consensus 200 ~~~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~ 259 (273)
++..|. .+..+..+ +.|+++++++++.++|...+..
T Consensus 151 ----------------q~~~~~------~~~~~~AD--~vI~n~~~~~~l~~~v~~~~~~ 186 (192)
T 2grj_A 151 ----------------DRRLKF------QEDIVPQG--IVVANNSTLEDLEKKVEEVMKL 186 (192)
T ss_dssp ----------------HHHHTT------CTTCCCCS--EEEECSSCHHHHHHHHHHHHHH
T ss_pred ----------------cCCchh------hhHHhcCC--EEEECCCCHHHHHHHHHHHHHH
Confidence 011100 01111122 4577788999999999887754
No 79
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=99.34 E-value=1.1e-11 Score=101.22 Aligned_cols=159 Identities=10% Similarity=0.020 Sum_probs=85.6
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCee--chhHHHHHHccCCChHHHHHHH--HHHCCCCC-CH---HHHH---HHH
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHI--SMGSLVRQELSPRSALYKQIAN--AVNEGKLV-PE---DVIF---ALL 131 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~i--s~~dllr~~~~~~~~~g~~i~~--~l~~g~~~-~~---~~~~---~ll 131 (273)
++.|+|+|+|||||||+++.|+++++.+++ ++|++... ..+. .+..... +-..+... .. .... ..+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEA-MPLK--MQSAEGGIEFDADGGVSIGPEFRALEGAWAEGV 79 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHH-SCGG--GGTSTTSEEECTTSCEEECHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhh-cchh--hccchhhccccCCCccccchhHHHHHHHHHHHH
Confidence 468999999999999999999999987665 47666543 2221 0000000 00000000 01 1111 112
Q ss_pred HHHHHhcccCCcceEEEeCCCC-CHHH-HHHHHhhCC-CceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCC
Q 024067 132 SKRLEEGYYRGESGFILDGIPR-TRIQ-AEILDQIVD-VDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAAD 208 (273)
Q Consensus 132 ~~~l~~~~~~~~~g~IlDg~P~-~~~q-a~~l~~~~~-~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d 208 (273)
...+. .+..+|+|+... .... ....+.+.. +..+|+|+|+.+++.+|+..|...+ ..
T Consensus 80 ~~~~~-----~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~r~~~~---------------~~ 139 (178)
T 1qhx_A 80 VAMAR-----AGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDGAVAEGRETARGDRV---------------AG 139 (178)
T ss_dssp HHHHH-----TTCEEEEEECCTTTHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHHHHTSSSC---------------TT
T ss_pred HHHHh-----cCCeEEEEeccccChHHHHHHHHHhcCCcEEEEEEECCHHHHHHHHHhhCCcc---------------cc
Confidence 22222 235789998543 2221 122222222 3468889999999999998876321 11
Q ss_pred cHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCC-ChhHHHHHHHHHH
Q 024067 209 AASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAA-APGETWQGLLSAL 257 (273)
Q Consensus 209 ~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~-s~~ev~~~I~~~l 257 (273)
....+ + ..+.. |.. .-+.||++. +++++.+.|.+.|
T Consensus 140 ---~~~~~---~----~~~~~-~~~--~d~~idt~~~~~~~~~~~I~~~l 176 (178)
T 1qhx_A 140 ---MAAKQ---A----YVVHE-GVE--YDVEVDTTHKESIECAWAIAAHV 176 (178)
T ss_dssp ---HHHHH---T----TGGGT-TCC--CSEEEETTSSCHHHHHHHHHTTC
T ss_pred ---hhhhh---c----hhhcc-CCC--CcEEEECCCCCHHHHHHHHHHHh
Confidence 11111 1 11111 222 236788775 8999999988654
No 80
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.33 E-value=1.5e-11 Score=106.96 Aligned_cols=179 Identities=14% Similarity=0.103 Sum_probs=95.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHc----cCC-----ChHHHHHHHHH--------------HC
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQEL----SPR-----SALYKQIANAV--------------NE 118 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~----~~~-----~~~g~~i~~~l--------------~~ 118 (273)
++..|.|+||+||||||+++.|++++|+.+++.|.+++... ..+ ...-..+...+ -.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 105 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVILE 105 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEEET
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEEEC
Confidence 56789999999999999999999999999999999985432 111 01011111100 00
Q ss_pred CCCCCH-----------------HHHHHHHHHHHHhcccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHH
Q 024067 119 GKLVPE-----------------DVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLV 181 (273)
Q Consensus 119 g~~~~~-----------------~~~~~ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~ 181 (273)
+..+.+ ..+...+.+..... ....++|+||--.... -+...+++|||+++.+++.
T Consensus 106 ~~~v~~~i~~~~v~~~~s~~~~~~~vr~~l~~~~~~~--a~~~~~V~~gr~~~~~------v~~~~~~~ifl~A~~e~r~ 177 (252)
T 4e22_A 106 GEDVSNEIRTETVGNTASQAAAFPRVREALLRRQRAF--REAPGLIADGRDMGTI------VFPDAPVKIFLDASSQERA 177 (252)
T ss_dssp TEECTTGGGSHHHHHHHHHHTTSHHHHHHHHHHHHTT--CCSSCEEEEESSCCCC------CSTTCSEEEEEECCHHHHH
T ss_pred CeehhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH--hhCCCEEEEeceecee------ecCCCCEEEEEECCHHHHH
Confidence 001111 11122222222221 2357899987311100 0123579999999999999
Q ss_pred HHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHHH--HHHhhHHHHHHHHhcCcEEEEeCCC-ChhHHHHHHHHHHH
Q 024067 182 KRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRI--YAEQGKSLEDYYSKQRKLLNFQVAA-APGETWQGLLSALH 258 (273)
Q Consensus 182 ~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~--y~~~~~~l~~~y~~~~~~~~id~~~-s~~ev~~~I~~~l~ 258 (273)
+|...+.... +...+.+.+.+++.. ..+....+.. |......+.||++. +++++.+.|...+.
T Consensus 178 ~R~~~~l~~~-------------~~~~~~~~~~~~i~~rd~~~~~r~~~p-l~~~~d~~~Idts~~~~eev~~~I~~~i~ 243 (252)
T 4e22_A 178 HRRMLQLQER-------------GFNVNFERLLAEIQERDNRDRNRSVAP-LVPAADALVLDSTSMSIEQVIEQALAYAQ 243 (252)
T ss_dssp HHHHHHHHHH-------------TCCCCHHHHHHHHC------------C-CCCCTTEEEEECSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc-------------CCCCCHHHHHHHHHHHHHHhhhccccc-hhccCCeEEEECcCCCHHHHHHHHHHHHH
Confidence 9975421000 001122333333311 1111111111 11111246788776 89999999999998
Q ss_pred hcCC
Q 024067 259 LQHM 262 (273)
Q Consensus 259 ~~~~ 262 (273)
....
T Consensus 244 ~~~~ 247 (252)
T 4e22_A 244 RILA 247 (252)
T ss_dssp HHCC
T ss_pred HHhh
Confidence 7653
No 81
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=99.31 E-value=7.7e-12 Score=103.21 Aligned_cols=155 Identities=17% Similarity=0.173 Sum_probs=86.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC-----CCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHH----HHHHH--
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPED----VIFAL-- 130 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g-----~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~----~~~~l-- 130 (273)
++..|+|+|+|||||||+++.|++.++ +.+++.+. ++..+.+.. ..... .+..+
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~-~~~~~~~~~--------------~~~~~~r~~~~~~~~~ 76 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDW-ARTTVSEGA--------------GFTREERLRHLKRIAW 76 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH-HHTTTTTTC--------------CCCHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHH-HHHHHhhcc--------------CCChhhHHHHHHHHHH
Confidence 678999999999999999999999885 34566544 444332211 11111 11111
Q ss_pred HHHHHHhcccCCcceEEEeCCCCCHHHHHHHH----hhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCC
Q 024067 131 LSKRLEEGYYRGESGFILDGIPRTRIQAEILD----QIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSA 206 (273)
Q Consensus 131 l~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~----~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~ 206 (273)
+...+.. .+..+|+|++.......+.+. ....|+++|+|++|++++.+|+..+....
T Consensus 77 ~~~~~~~----~g~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~v~L~~~~e~~~~R~~~~~~~~--------------- 137 (186)
T 2yvu_A 77 IARLLAR----NGVIVICSFVSPYKQARNMVRRIVEEEGIPFLEIYVKASLEEVIRRDPKGLYKK--------------- 137 (186)
T ss_dssp HHHHHHT----TTCEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCHHHHHHH---------------
T ss_pred HHHHHHh----CCCEEEEeCccccHHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHhhhhhhhhH---------------
Confidence 1111111 234567788654433333332 22357899999999999999974321000
Q ss_pred CCcHHHHHHHHHHHHHhhHHHHHHHHh-cCcEEEEeCC-CChhHHHHHHHHHHHh
Q 024067 207 ADAASAWKEKFRIYAEQGKSLEDYYSK-QRKLLNFQVA-AAPGETWQGLLSALHL 259 (273)
Q Consensus 207 ~d~~e~~~~rl~~y~~~~~~l~~~y~~-~~~~~~id~~-~s~~ev~~~I~~~l~~ 259 (273)
.-...+..+. .+.+.|.. ....+.||++ .+++++.++|...+..
T Consensus 138 -----~~~~~~~~~~----~~~~~y~~~~~~~~~Id~~~~~~~ev~~~I~~~l~~ 183 (186)
T 2yvu_A 138 -----ALKGELENFT----GITDPYEPPENPQLVLDTESNTIEHNVSYLYSLVKA 183 (186)
T ss_dssp -----HHTTCCSSCH----HHHSCCCCCSSCSEEEETTTSCHHHHHHHHHHHHHH
T ss_pred -----Hhhcchhhhh----hhhhcccCCCCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 0000000000 01112331 1235789987 7999999999998864
No 82
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=99.29 E-value=2e-12 Score=112.38 Aligned_cols=120 Identities=13% Similarity=0.058 Sum_probs=72.0
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhC--CCeechhHHHHHHccCC----ChHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 024067 60 PRRGVQWVLIGDPGVKKHVYADNLSKLLE--VPHISMGSLVRQELSPR----SALYKQIANAVNEGKLVPEDVIFALLSK 133 (273)
Q Consensus 60 ~~~~~~Ivi~G~pGSGKsT~a~~La~~~g--~~~is~~dllr~~~~~~----~~~g~~i~~~l~~g~~~~~~~~~~ll~~ 133 (273)
..+|..|+|+|+|||||||+++.|++.++ +.+++.|. +++..... ...|..+.++... .....+..++..
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~-~r~~~~~~~~i~~~~g~~~~~~~~~---~~~~~~~~~~~~ 104 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDS-FRSQHPHYLELQQEYGKDSVEYTKD---FAGKMVESLVTK 104 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGG-GGTTSTTHHHHHTTCSSTTHHHHHH---HHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHH-HHHhchhHHHHHHHcCchHHHHhhH---HHHHHHHHHHHH
Confidence 34678999999999999999999999997 45666654 44332210 0011111111110 001122233333
Q ss_pred HHHhcccCCcceEEEeCCCCCHHHHHHHHh----hCCCceEEEEccCHHHHHHHHhcCC
Q 024067 134 RLEEGYYRGESGFILDGIPRTRIQAEILDQ----IVDVDLVINFKSIEDQLVKRNLESE 188 (273)
Q Consensus 134 ~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~----~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (273)
.+.. +.+||+|+++++..+...+.. .+.+-.++++++|.+++.+|+.+|.
T Consensus 105 ~~~~-----g~~vVid~~~~~~~~~~~~~~~l~~~g~~v~lv~l~~~~e~~~~R~~~R~ 158 (253)
T 2p5t_B 105 LSSL-----GYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATKPELSYLSTLIRY 158 (253)
T ss_dssp HHHT-----TCCEEEECCTTSSHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHHHH
T ss_pred HHhc-----CCCEEEeCCCCCHHHHHHHHHHHHHCCCcEEEEEEeCCHHHHHHHHHHHH
Confidence 2322 358999999998776544432 2233346788999999999998774
No 83
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=99.27 E-value=6.7e-11 Score=104.84 Aligned_cols=120 Identities=12% Similarity=0.049 Sum_probs=75.2
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHh--CCCeechhHHHHHHccCCChHHHHHHHHHHCC----CCCCHHHHHHHHHH
Q 024067 60 PRRGVQWVLIGDPGVKKHVYADNLSKLL--EVPHISMGSLVRQELSPRSALYKQIANAVNEG----KLVPEDVIFALLSK 133 (273)
Q Consensus 60 ~~~~~~Ivi~G~pGSGKsT~a~~La~~~--g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g----~~~~~~~~~~ll~~ 133 (273)
..+|..|+|+|||||||||+++.|++++ ++.+||.| .++..... ....+..+.... ......+....+..
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D-~~R~~~~~---~~~~~~~~~~~a~~~~~~~~~~~~~~~v~~ 105 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDND-TFKQQHPN---FDELVKLYEKDVVKHVTPYSNRMTEAIISR 105 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTH-HHHTTSTT---HHHHHHHHGGGCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEech-HhHHhchh---hHHHHHHccchhhhhhhHHHHHHHHHHHHH
Confidence 3467899999999999999999999999 78899974 45543322 111111111000 00111223344444
Q ss_pred HHHhcccCCcceEEEeCCCCCHHHHHHHH----hhCCCceEEEEccCHHHH----HHHHhcCC
Q 024067 134 RLEEGYYRGESGFILDGIPRTRIQAEILD----QIVDVDLVINFKSIEDQL----VKRNLESE 188 (273)
Q Consensus 134 ~l~~~~~~~~~g~IlDg~P~~~~qa~~l~----~~~~~d~vI~L~~~~e~l----~~Rl~~R~ 188 (273)
.+.. +..+|+|+.+.+..+...+. ..+.+..+++|.+|++++ .+|+..|.
T Consensus 106 ~l~~-----g~~vIld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p~~~~~l~~~~Rl~~R~ 163 (287)
T 1gvn_B 106 LSDQ-----GYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYETMY 163 (287)
T ss_dssp HHHH-----TCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHHHHHHH
T ss_pred HHhc-----CCeEEEECCCCCHHHHHHHHHHHHhCCCcEEEEEEECCHHHHHHHHHHHHHHHH
Confidence 4443 46799999998876554432 222344579999999999 88886553
No 84
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=99.27 E-value=3.5e-11 Score=112.07 Aligned_cols=100 Identities=15% Similarity=0.053 Sum_probs=75.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhccc
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYY 140 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~ 140 (273)
..+..|+|+|+|||||||+++.|++.+++.+|+.|++- .+ ......+...+..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~~--------~~----------------~~~~~~~~~~l~~--- 308 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLG--------SW----------------QRCVSSCQAALRQ--- 308 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGSC--------SH----------------HHHHHHHHHHHHT---
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccchHH--------HH----------------HHHHHHHHHHHhc---
Confidence 35678999999999999999999999999999998751 01 1122333444443
Q ss_pred CCcceEEEeCCCCCHHHHHHHHh----hCCCceEEEEccCHHHHHHHHhcCCc
Q 024067 141 RGESGFILDGIPRTRIQAEILDQ----IVDVDLVINFKSIEDQLVKRNLESEA 189 (273)
Q Consensus 141 ~~~~g~IlDg~P~~~~qa~~l~~----~~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (273)
+..+|+|+.+.+..+...+.. ...+..+|+|+++.+++++|+..|..
T Consensus 309 --g~~vIiD~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~R~~ 359 (416)
T 3zvl_A 309 --GKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFREM 359 (416)
T ss_dssp --TCCEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHHHH
T ss_pred --CCcEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCCHHHHHHHHHhhcc
Confidence 467999999888777665533 23455799999999999999998864
No 85
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=99.22 E-value=3.8e-11 Score=98.36 Aligned_cols=112 Identities=14% Similarity=0.145 Sum_probs=61.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh---CCCeechh-HHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHH--HH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLL---EVPHISMG-SLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLS--KR 134 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~---g~~~is~~-dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~--~~ 134 (273)
.++..|+|+|++||||||+++.|++.+ |++++.++ +.+++.+.....+... ..++.+.++.. ..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~ 72 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPE----------DREENVRRIAEVAKL 72 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTTTCCSSHH----------HHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHHHHhhccccccc----------cHHHHHHHHHHHHHH
Confidence 357899999999999999999999998 98887553 3343322111000000 00111222211 11
Q ss_pred HHhcccCCcceEEEeCCCCC-H---HHHHHH-HhhCCCceEEEEccCHHHHHHHHhcC
Q 024067 135 LEEGYYRGESGFILDGIPRT-R---IQAEIL-DQIVDVDLVINFKSIEDQLVKRNLES 187 (273)
Q Consensus 135 l~~~~~~~~~g~IlDg~P~~-~---~qa~~l-~~~~~~d~vI~L~~~~e~l~~Rl~~R 187 (273)
+.. . ..+++.++... . .....+ .....|+++|+|+||++++.+|+..+
T Consensus 73 ~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~~ 125 (179)
T 2pez_A 73 FAD----A-GLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKG 125 (179)
T ss_dssp HHH----T-TCEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCTTS
T ss_pred HHH----C-CCEEEEecCCcchHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHHHhhh
Confidence 211 1 12344333222 1 111112 22346889999999999999998654
No 86
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=99.22 E-value=6.5e-10 Score=92.79 Aligned_cols=152 Identities=13% Similarity=0.055 Sum_probs=88.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh---CCC--eechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHH------
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLL---EVP--HISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFA------ 129 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~---g~~--~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~------ 129 (273)
.++..|+|+|++||||||+++.|++.+ |.. +++.+++. ..+.. +..+..+....
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~-~~~~~--------------~~~~~~~~~~~~~~~~~ 87 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVR-HGLNR--------------DLSFKAEDRAENIRRVG 87 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHT-TTTTT--------------TCCSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhh-hHhhc--------------ccCcChHHHHHHHHHHH
Confidence 357899999999999999999999998 665 88876543 22221 11111111111
Q ss_pred HHHHHHHhcccCCcceEEEeCCCCCHHHHHHHHhhCC--CceEEEEccCHHHHHHHH------hcCCcCCCcccccccCC
Q 024067 130 LLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVD--VDLVINFKSIEDQLVKRN------LESEAFSPHKEFLRLGG 201 (273)
Q Consensus 130 ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~--~d~vI~L~~~~e~l~~Rl------~~R~~~~~~~~~y~~~~ 201 (273)
.+...+.. .+..+|++.........+.+..... ...+|+|+++.+++.+|+ ..|..+.
T Consensus 88 ~~~~~~~~----~~~~vi~~~~~~~~~~r~~~~~~~~~~~~~~v~L~a~~e~~~~R~~~~l~~~~r~~~~---------- 153 (200)
T 3uie_A 88 EVAKLFAD----AGIICIASLISPYRTDRDACRSLLPEGDFVEVFMDVPLSVCEARDPKGLYKLARAGKI---------- 153 (200)
T ss_dssp HHHHHHHH----TTCEEEEECCCCCHHHHHHHHHTSCTTSEEEEEECCCHHHHHHHCTTSHHHHHHTTSS----------
T ss_pred HHHHHHHh----CCceEEEecCCchHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhcccchHHHHhcCCC----------
Confidence 11111222 2355666665444455555554433 345799999999999997 2222111
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhc-CcEEEEeCC--CChhHHHHHHHHHHHhcC
Q 024067 202 ARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQ-RKLLNFQVA--AAPGETWQGLLSALHLQH 261 (273)
Q Consensus 202 ~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~-~~~~~id~~--~s~~ev~~~I~~~l~~~~ 261 (273)
.. ... +. ..|... .--+.||++ .+++++.+.|...|....
T Consensus 154 ~~--~~~----~~--------------~~~~~~~~~~~~idt~~~~~~~e~v~~i~~~l~~~~ 196 (200)
T 3uie_A 154 KG--FTG----ID--------------DPYEPPLNCEISLGREGGTSPIEMAEKVVGYLDNKG 196 (200)
T ss_dssp CS--CBT----TT--------------BCCCCCSSCSEEECCSSCCCHHHHHHHHHHHHHHHT
T ss_pred CC--CCC----CC--------------CcCcCCCCCCEEEecCCCCCHHHHHHHHHHHHHHcC
Confidence 00 000 00 012211 123667876 499999999999997764
No 87
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=99.21 E-value=1.3e-10 Score=100.04 Aligned_cols=177 Identities=14% Similarity=0.137 Sum_probs=94.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHc----cCCCh--HHHHHHHHHHC-----------------
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQEL----SPRSA--LYKQIANAVNE----------------- 118 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~----~~~~~--~g~~i~~~l~~----------------- 118 (273)
+++.|+|.|||||||||+++.|++++|+++++.|.+++... ..+-+ -.+.+.+...+
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l~ 87 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAFLA 87 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEEET
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEEEC
Confidence 56789999999999999999999999999999999987632 11110 01122222221
Q ss_pred CCCCCH-----HH------------HHHHHHHHHHhcccCCc-ceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHH
Q 024067 119 GKLVPE-----DV------------IFALLSKRLEEGYYRGE-SGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQL 180 (273)
Q Consensus 119 g~~~~~-----~~------------~~~ll~~~l~~~~~~~~-~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l 180 (273)
|..+.+ ++ +...+.+..... ... .++|+||-..... -+...++-|||+++.++.
T Consensus 88 g~~v~~~ir~~~v~~~~s~va~~~~vr~~l~~~qr~~--a~~~~~~V~~GRd~gt~------V~pda~lkifl~A~~e~R 159 (233)
T 3r20_A 88 GEDVSSEIRGDAVTGAVSAVSAVPAVRTRLVDIQRKL--ATEGGRVVVEGRDIGTV------VLPDADVKIFLTASAEER 159 (233)
T ss_dssp TEECTTGGGSHHHHHHHHHHHTCHHHHHHHHHHHHHH--HTSSSCEEEEESSCCCC------CCTTCSEEEEEECCHHHH
T ss_pred CeehhhhhcchHHHHHHHHHhcchHHHHHHHHHHHHH--HHhcCcEEEecccceeE------EcCCCCEEEEEECCHHHH
Confidence 111111 11 111111111111 123 6788887321100 001346899999999999
Q ss_pred HHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHHHHHHhhHHHHHHHH---hcCcEEEEeCCC-ChhHHHHHHHHH
Q 024067 181 VKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYS---KQRKLLNFQVAA-APGETWQGLLSA 256 (273)
Q Consensus 181 ~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~---~~~~~~~id~~~-s~~ev~~~I~~~ 256 (273)
.+|...+.... ...-+.+.+.+.+......-.. .|.. .....+.||++. +++++.+.|...
T Consensus 160 a~Rr~~~l~~~-------------~~~~~~~~~~~~i~~rD~~d~~--r~~~pl~~~~dal~IDTs~l~iee~v~~I~~~ 224 (233)
T 3r20_A 160 ARRRNAQNVAN-------------GLPDDYATVLADVQRRDHLDST--RPVSPLRAADDALVVDTSDMDQAQVIAHLLDL 224 (233)
T ss_dssp HHHHHHHHHHT-------------TCCCCHHHHHHHHHHHHHHHHH--SCSSCCSCCTTSEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-------------cCCCCHHHHHHHHHHHHHhhhh--ccccccccccCcEEEECCCCCHHHHHHHHHHH
Confidence 99886421100 0011234444444332211100 0001 111127788765 999999999998
Q ss_pred HHhcC
Q 024067 257 LHLQH 261 (273)
Q Consensus 257 l~~~~ 261 (273)
+..+.
T Consensus 225 i~~~~ 229 (233)
T 3r20_A 225 VTAQA 229 (233)
T ss_dssp C----
T ss_pred HHHhh
Confidence 87654
No 88
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=99.18 E-value=1.5e-12 Score=109.35 Aligned_cols=176 Identities=16% Similarity=0.120 Sum_probs=89.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChH-HHHHHHHHHC--CCCCCHHHHHHHH--------H
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSAL-YKQIANAVNE--GKLVPEDVIFALL--------S 132 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~-g~~i~~~l~~--g~~~~~~~~~~ll--------~ 132 (273)
+.|+|+|++||||||+++.|++.++...+++. +++ +...+++. ++.++..+.. |...++.....++ .
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~-~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 78 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFRAAGRSVA-TLA-FPRYGQSVAADIAAEALHGEHGDLASSVYAMATLFALDRAGAV 78 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHHEEEEEEE-EEE-SSEEEEEEEEEEHHHHEEEEEEEEEEEHHHHHHHHHHHHHEEH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE-EEe-ecCCCCcchhhHHHHHHcccccccCCCHhHHHHHHHHHHhhhH
Confidence 36899999999999999999999864333221 000 00000111 2222222211 1111111111111 0
Q ss_pred HHHHhcccCCcceEEEeCCCCCH--HHH------------HHHHhh-------CCCceEEEEccCHHHHHHHHhcCCcCC
Q 024067 133 KRLEEGYYRGESGFILDGIPRTR--IQA------------EILDQI-------VDVDLVINFKSIEDQLVKRNLESEAFS 191 (273)
Q Consensus 133 ~~l~~~~~~~~~g~IlDg~P~~~--~qa------------~~l~~~-------~~~d~vI~L~~~~e~l~~Rl~~R~~~~ 191 (273)
+.+... ...+..+|+|+++.+. .|. +.+... ..||.+|+|+++++++.+|+..|....
T Consensus 79 ~~i~~~-l~~g~~vi~D~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~ 157 (214)
T 1gtv_A 79 HTIQGL-CRGYDVVILDRYVASNAAYSAARLHENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVSAELAGERSRGRAQRD 157 (214)
T ss_dssp HHHHHE-EEEEEEEEEEEEEHHHHHHHHHHEEEEEEEHHHHHHHHHHEEEEECCBCEEEEEEEEEHHHHHHHHHHHHHEB
T ss_pred HHHHHH-hhCCCEEEECCCcccchhhhhcccCccccHHHHHHHHhcccccccCCCCCEEEEEeCCHHHHHHHHHcccccc
Confidence 112211 1124568999998652 222 112221 268999999999999999998885320
Q ss_pred CcccccccCCCCCCCCCcHHHHHHHHH-HHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHH
Q 024067 192 PHKEFLRLGGARFSAADAASAWKEKFR-IYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLS 255 (273)
Q Consensus 192 ~~~~~y~~~~~~~~~~d~~e~~~~rl~-~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~ 255 (273)
.++.-+ ..+.. +.+.+++. .|.+. .+.|. ...++.||+++++++++++|..
T Consensus 158 -~~~~~d------~~e~~-~~~~~~~~~~~~~~----~~~~~-~~~~~vId~~~~~~~v~~~i~~ 209 (214)
T 1gtv_A 158 -PGRARD------NYERD-AELQQRTGAVYAEL----AAQGW-GGRWLVVGADVDPGRLAATLAP 209 (214)
T ss_dssp -BEEEEE------EEEEE-HHHHHHHHHHHHHH----HHEEE-EEEEEEEEEEEBHHHHHHHHC-
T ss_pred -cccccc------ccccc-HHHHHHHHHHHHHH----HHhCC-CCCEEEEeCCCCHHHHHHHhcC
Confidence 010000 00001 24444443 34322 22121 1357889999999999988854
No 89
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=99.16 E-value=5.4e-11 Score=101.80 Aligned_cols=78 Identities=12% Similarity=0.077 Sum_probs=38.8
Q ss_pred CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCc--HHHHHHHHHHHHHhhHHHHHHH-HhcCcEEEEe
Q 024067 165 VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADA--ASAWKEKFRIYAEQGKSLEDYY-SKQRKLLNFQ 241 (273)
Q Consensus 165 ~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~--~e~~~~rl~~y~~~~~~l~~~y-~~~~~~~~id 241 (273)
..||++|+|++|++++++|+..|... ++. ...+.+++..+.... ...|| .....++.||
T Consensus 145 ~~pD~vi~Ld~~~e~~~~Ri~~R~r~----------------~e~~~~~~~~~rv~~~~~~~--~~~~~~~~~~~~~vId 206 (230)
T 2vp4_A 145 VQADLIIYLRTSPEVAYERIRQRARS----------------EESCVPLKYLQELHELHEDW--LIHQRRPQSCKVLVLD 206 (230)
T ss_dssp CCCSEEEEEECCHHHHHHHHHHHCCG----------------GGTTCCHHHHHHHHHHHHHH--HTSCCSSCCCEEEEEE
T ss_pred CCCCEEEEEeCCHHHHHHHHHHcCCc----------------ccccCcHHHHHHHHHHHHHH--HHHhcccCCCCEEEEE
Confidence 36999999999999999999876421 111 113555655443321 11222 3345689999
Q ss_pred CCCChhHHHHHHHHHHHhc
Q 024067 242 VAAAPGETWQGLLSALHLQ 260 (273)
Q Consensus 242 ~~~s~~ev~~~I~~~l~~~ 260 (273)
+++++++|+++|.+.+...
T Consensus 207 ~~~~~eev~~~I~~~l~~~ 225 (230)
T 2vp4_A 207 ADLNLENIGTEYQRSESSI 225 (230)
T ss_dssp CCC----------------
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999999999988643
No 90
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=99.12 E-value=3.7e-10 Score=109.77 Aligned_cols=165 Identities=16% Similarity=0.147 Sum_probs=88.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh---CCCeechh-HHHHHHccCCChHH-HHHHHHHHCCCCCCHHHHHHHHHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLL---EVPHISMG-SLVRQELSPRSALY-KQIANAVNEGKLVPEDVIFALLSKRL 135 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~---g~~~is~~-dllr~~~~~~~~~g-~~i~~~l~~g~~~~~~~~~~ll~~~l 135 (273)
.+++.|+|+|+|||||||+++.|++++ |++++.+| +.++..+.....+. ..-.+.+ ..+..++...+
T Consensus 50 ~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~~L~~~~~fs~~dree~~--------r~i~eva~~~l 121 (630)
T 1x6v_B 50 FRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENV--------RRIAEVAKLFA 121 (630)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTTTTTTTCCSSHHHHHHHH--------HHHHHHHHHHH
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhhccCccccCChhhhHHHH--------HHHHHHHHHHH
Confidence 367899999999999999999999999 98887764 55554332211110 0000000 01112222222
Q ss_pred HhcccCCcceEEEeC-CCCC--HHHHHHH-HhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHH
Q 024067 136 EEGYYRGESGFILDG-IPRT--RIQAEIL-DQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAAS 211 (273)
Q Consensus 136 ~~~~~~~~~g~IlDg-~P~~--~~qa~~l-~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e 211 (273)
.. +..+|.|. .|.. ..+...+ .....++++|+|++|.+++.+|+..+.... . +...
T Consensus 122 ~~-----G~iVI~d~~s~~~~~r~~~r~ll~~~g~p~~vV~Ldap~Evl~~Rl~r~ly~~--a----------R~~~--- 181 (630)
T 1x6v_B 122 DA-----GLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKK--A----------RAGE--- 181 (630)
T ss_dssp HT-----TCEEEEECCCCCHHHHHHHHHHHHTTTCCEEEEEEECCHHHHHHHCTTSHHHH--H----------TTC----
T ss_pred hC-----CCEEEEeCchhhHHHHHHHHHHHHhCCCCeEEEEEECCHHHHHHHhccccchh--h----------hhhh---
Confidence 22 23445552 2221 1222222 222447889999999999999986321100 0 0000
Q ss_pred HHHHHHHHHHHhhHHHHHHHHh-cCcEEEEeCC-CChhHHHHHHHHHHHhcCC
Q 024067 212 AWKEKFRIYAEQGKSLEDYYSK-QRKLLNFQVA-AAPGETWQGLLSALHLQHM 262 (273)
Q Consensus 212 ~~~~rl~~y~~~~~~l~~~y~~-~~~~~~id~~-~s~~ev~~~I~~~l~~~~~ 262 (273)
+..| ..+...|.. ..--+.||++ .+++++.++|.+.|..+..
T Consensus 182 -----~~~~----~~~~~~Ye~p~~~dlvIDts~~s~eevv~~Il~~L~~~~~ 225 (630)
T 1x6v_B 182 -----IKGF----TGIDSEYEKPEAPELVLKTDSCDVNDCVQQVVELLQERDI 225 (630)
T ss_dssp --------C----BTTTBCCCCCSSCSEEEETTSSCHHHHHHHHHHHHHHTTS
T ss_pred -----HHHH----HHhhhhhcccCCCcEEEECCCCCHHHHHHHHHHHHHhcCc
Confidence 0001 001122321 1112678987 5999999999999987653
No 91
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.11 E-value=1.9e-10 Score=95.77 Aligned_cols=168 Identities=13% Similarity=0.120 Sum_probs=91.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccC---CCh----HHHHHHHHHHCCCCCCH--------HH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSP---RSA----LYKQIANAVNEGKLVPE--------DV 126 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~---~~~----~g~~i~~~l~~g~~~~~--------~~ 126 (273)
++..|+|+||+||||||+++.|+..+.-.+++..++.+..... +.. ....+......+..... ..
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKALAEIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHATIYERHYGT 85 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSSSEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEEEE
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCCCeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeeeeeecccccc
Confidence 4678999999999999999999998753333332221110000 000 00112222211111000 00
Q ss_pred HHHHHHHHHHhcccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCC
Q 024067 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSA 206 (273)
Q Consensus 127 ~~~ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~ 206 (273)
....+.+.+.. +..+|+|+.+....+.. .....+..++.+..+.+++.+|+.+|...
T Consensus 86 ~~~~i~~~l~~-----g~~vi~d~~~~~~~~~~--~~~~~~~~v~~~~~~~e~l~~Rl~~R~~~---------------- 142 (205)
T 3tr0_A 86 EKDWVLRQLKA-----GRDVLLEIDWQGARQIR--ELFPPALSIFILPPSIEALRERLIKRRQD---------------- 142 (205)
T ss_dssp EHHHHHHHHHT-----TCEEEEECCHHHHHHHH--HHCTTCEEEEEECSCHHHHHHHHHTCTTS----------------
T ss_pred hHHHHHHHHHc-----CCeEEEEECHHHHHHHH--HhCCCcEEEEEECcCHHHHHHHHHHhCCC----------------
Confidence 01223333443 35788998665444432 22234444555556799999999988632
Q ss_pred CCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhcC
Q 024067 207 ADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQH 261 (273)
Q Consensus 207 ~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~~ 261 (273)
+++.+++|+..+... .+++...+ ++.+| + ++++++++|...+....
T Consensus 143 --~~~~i~~rl~~~~~~----~~~~~~~d-~vi~n-~-~~~~~~~~l~~~i~~~~ 188 (205)
T 3tr0_A 143 --DTAIIEQRLALAREE----MAHYKEFD-YLVVN-D-NFDQAVQNLIHIISAER 188 (205)
T ss_dssp --CSSTHHHHHHHHHHH----HTTGGGCS-EEEEC-S-SHHHHHHHHHHHHHHHT
T ss_pred --CHHHHHHHHHHHHHH----HhcccCCC-EEEEC-C-CHHHHHHHHHHHHHHHH
Confidence 223567777766432 33444444 33333 3 89999999999997543
No 92
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=99.11 E-value=9.3e-11 Score=97.69 Aligned_cols=166 Identities=11% Similarity=0.102 Sum_probs=72.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh-CCCeechhHHHHHHcc---CCCh----HHHHHHHHHHCCCCCCHH--------
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL-EVPHISMGSLVRQELS---PRSA----LYKQIANAVNEGKLVPED-------- 125 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~-g~~~is~~dllr~~~~---~~~~----~g~~i~~~l~~g~~~~~~-------- 125 (273)
++..|+|+|++||||||+++.|++.+ .-..+..+...+.... .+.. -...+..++.+|..+...
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 84 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTRDAFEALIKDDQFIEYAEYVGNYYG 84 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCTTCCEECCCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhhCCCeEEecccccCCCCCCccCCCceEEcCHHHHHHHHHcCCeEEEEeECCeecC
Confidence 56789999999999999999999987 2112222222111000 0000 012233334444332110
Q ss_pred HHHHHHHHHHHhcccCCcceEEEeCCCCCHHHHHHHHhhCCCc-eEEEEc-cCHHHHHHHHhcCCcCCCcccccccCCCC
Q 024067 126 VIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVD-LVINFK-SIEDQLVKRNLESEAFSPHKEFLRLGGAR 203 (273)
Q Consensus 126 ~~~~ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d-~vI~L~-~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~ 203 (273)
.....+...+.. +..+|+|+.+....+ +.... +| .+|++. ++.+++.+|+..|..
T Consensus 85 ~~~~~i~~~l~~-----g~~vv~d~~~~~~~~---~~~~~-~~~~~i~~~~~~~~~~~~Rl~~R~~-------------- 141 (207)
T 2j41_A 85 TPVQYVKDTMDE-----GHDVFLEIEVEGAKQ---VRKKF-PDALFIFLAPPSLEHLRERLVGRGT-------------- 141 (207)
T ss_dssp EEHHHHHHHHHT-----TCEEEEECCGGGHHH---HHHHC-TTSEEEEEECCC---------------------------
T ss_pred CCHHHHHHHHHc-----CCeEEEEECHHHHHH---HHHhc-CCeEEEEEECCCHHHHHHHHHhcCC--------------
Confidence 011223333433 367899987654433 22222 35 334433 568899999987752
Q ss_pred CCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhcC
Q 024067 204 FSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQH 261 (273)
Q Consensus 204 ~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~~ 261 (273)
++++.+.+|+..+.... ++|...+ ++ |+.+ ++++++++|...+....
T Consensus 142 ----~~~~~~~~rl~~~~~~~----~~~~~~d-~v-I~n~-~~e~~~~~i~~~l~~~~ 188 (207)
T 2j41_A 142 ----ESDEKIQSRINEARKEV----EMMNLYD-YV-VVND-EVELAKNRIQCIVEAEH 188 (207)
T ss_dssp ------------------CGG----GGGGGCS-EE-EECS-SHHHHHHHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHHHHHHH----hccccCC-EE-EECC-CHHHHHHHHHHHHHHhh
Confidence 22345677776654332 2344444 44 4444 89999999999987543
No 93
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=99.06 E-value=3.4e-10 Score=108.86 Aligned_cols=163 Identities=14% Similarity=0.118 Sum_probs=90.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC-----CCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLE 136 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g-----~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~ 136 (273)
.+..|+|+|+|||||||+++.|++.++ +.+++.| .+++.+.....+...-+... -+.+..++...+.
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D-~ir~~l~~~~~f~~~er~~~-------l~~i~~~~~~~l~ 442 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGD-VVRTHLSRGLGFSKEDRITN-------ILRVGFVASEIVK 442 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHH-HHHHHTCTTCCSSHHHHHHH-------HHHHHHHHHHHHH
T ss_pred cceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECch-HhhhhhcccccccHHHHHHH-------HHHHHHHHHHHHh
Confidence 467899999999999999999999986 3677764 55655533211111000000 0011122222232
Q ss_pred hcccCCcceEEEeCCCCCHHHHHHHHhh-CCCc-eEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHH
Q 024067 137 EGYYRGESGFILDGIPRTRIQAEILDQI-VDVD-LVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWK 214 (273)
Q Consensus 137 ~~~~~~~~g~IlDg~P~~~~qa~~l~~~-~~~d-~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~ 214 (273)
.+.++|+|+..........+... ..++ ++|+|+++.+++.+|+. |.... ++. .
T Consensus 443 -----~G~~VI~d~~~~~~~~r~~~~~~l~~~d~~vV~L~~~~e~~~~Rl~-r~~~~---------------~~~----~ 497 (546)
T 2gks_A 443 -----HNGVVICALVSPYRSARNQVRNMMEEGKFIEVFVDAPVEVCEERDV-KGLYK---------------KAK----E 497 (546)
T ss_dssp -----TTCEEEEECCCCCHHHHHHHHTTSCTTCEEEEEEECCGGGHHHHCC-SSHHH---------------HC------
T ss_pred -----CCCEEEEEcCCCCHHHHHHHHHHhhcCCEEEEEEeCCHHHHHHHhh-ccccc---------------ccc----H
Confidence 24689999754333333333333 2356 89999999999999985 22100 000 0
Q ss_pred HHHHHHHHhhHHHHHHHHhcCcEEEEeCC-CChhHHHHHHHHHHHhc
Q 024067 215 EKFRIYAEQGKSLEDYYSKQRKLLNFQVA-AAPGETWQGLLSALHLQ 260 (273)
Q Consensus 215 ~rl~~y~~~~~~l~~~y~~~~~~~~id~~-~s~~ev~~~I~~~l~~~ 260 (273)
..+..+..... .|+.....-+.||++ .+++++.++|...|..+
T Consensus 498 ~~i~~~~~vr~---~~e~~~~adivIDts~~s~eev~~~I~~~L~~~ 541 (546)
T 2gks_A 498 GLIKGFTGVDD---PYEPPVAPEVRVDTTKLTPEESALKILEFLKKE 541 (546)
T ss_dssp ----CCBTTTB---CCCCCSSCSEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhh---ccccccCCcEEEECCCCCHHHHHHHHHHHHHHc
Confidence 01111000000 122111123778986 79999999999999765
No 94
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=99.05 E-value=6.6e-11 Score=113.18 Aligned_cols=152 Identities=16% Similarity=0.190 Sum_probs=85.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCe-----echhHHHHHHccCCChHHHHHHHHHHC-CCC---CCHHHHHHHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPH-----ISMGSLVRQELSPRSALYKQIANAVNE-GKL---VPEDVIFALLS 132 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~-----is~~dllr~~~~~~~~~g~~i~~~l~~-g~~---~~~~~~~~ll~ 132 (273)
.+..|+++|+|||||||+|+.|++.+++.+ |+.|++.++....... .+++.. +.. .........+.
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~~~~~~-----~~~f~~~~~~~~~~re~~~~~~l~ 108 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYSS-----YNFFRPDNEEAMKVRKQCALAALR 108 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHSCCCC-----GGGGCTTCHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhccCCcc-----ccccCcccHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999985443 6778855543222110 011110 000 00011111121
Q ss_pred ---HHHHhcccCCcceEEEeCCCCCHHHHHHHHhh----CCCceEEEEccC-HHHHHHHHhcCCcCCCcccccccCCCCC
Q 024067 133 ---KRLEEGYYRGESGFILDGIPRTRIQAEILDQI----VDVDLVINFKSI-EDQLVKRNLESEAFSPHKEFLRLGGARF 204 (273)
Q Consensus 133 ---~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~----~~~d~vI~L~~~-~e~l~~Rl~~R~~~~~~~~~y~~~~~~~ 204 (273)
..+.. ..+..+|+|+...+..+.+.+... ...-++|.+.|+ ++++.+|+..|.... -.|. ..
T Consensus 109 ~~~~~L~~---~~g~~VIvDat~~~~~~R~~~~~~a~~~g~~v~~l~~~~~d~e~i~~ri~~r~~~r---Pdl~----~~ 178 (520)
T 2axn_A 109 DVKSYLAK---EGGQIAVFDATNTTRERRHMILHFAKENDFKAFFIESVCDDPTVVASNIMEVKISS---PDYK----DC 178 (520)
T ss_dssp HHHHHHHH---SCCCEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHHHHHTTTS---GGGT----TS
T ss_pred HHHHHHHh---cCCceEEecCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCChHHHHHHHHHhhhhcC---Cccc----cC
Confidence 12211 235789999999888777655332 222356777777 677778886655321 0010 00
Q ss_pred CCCCcHHHHHHHHHHHHHhhHHHH
Q 024067 205 SAADAASAWKEKFRIYAEQGKSLE 228 (273)
Q Consensus 205 ~~~d~~e~~~~rl~~y~~~~~~l~ 228 (273)
..++..+.+.+|+..|+..++++.
T Consensus 179 d~e~~~~~~~~Ri~~y~~~Yepi~ 202 (520)
T 2axn_A 179 NSAEAMDDFMKRISCYEASYQPLD 202 (520)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred CHHHHHHHHHHHHHhhhhhhcccC
Confidence 012223566788888887776654
No 95
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=99.04 E-value=8.1e-10 Score=94.87 Aligned_cols=78 Identities=10% Similarity=-0.006 Sum_probs=47.5
Q ss_pred CCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHH-HHHHhhH----HH-HHHHHhcCcEEE
Q 024067 166 DVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFR-IYAEQGK----SL-EDYYSKQRKLLN 239 (273)
Q Consensus 166 ~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~-~y~~~~~----~l-~~~y~~~~~~~~ 239 (273)
.||++|+|++|++++.+|+..|.... ....+.+ +.+++. .|..... |+ .++| ....++.
T Consensus 149 ~pd~~i~l~~~~~~~~~R~~~R~r~~-------------e~~~~~~-~~~~v~~~y~~~~~~~~~p~~~~~~-~~~~~~~ 213 (241)
T 2ocp_A 149 TLHGFIYLQASPQVCLKRLYQRAREE-------------EKGIELA-YLEQLHGQHEAWLIHKTTKLHFEAL-MNIPVLV 213 (241)
T ss_dssp CCCEEEEEECCHHHHHHHHHHSCCTT-------------TTTCCHH-HHHHHHHHHHHHHTSCCSCCCCTTG-GGCCEEE
T ss_pred CCCEEEEEECCHHHHHHHHHhcCCcc-------------cccCCHH-HHHHHHHHHHHHHhhcccccccccc-CCCCEEE
Confidence 69999999999999999998775311 0011122 233332 3322111 00 0123 2456899
Q ss_pred EeCCCChhHHHHHHHHHHH
Q 024067 240 FQVAAAPGETWQGLLSALH 258 (273)
Q Consensus 240 id~~~s~~ev~~~I~~~l~ 258 (273)
||++++++++.+.+...+.
T Consensus 214 Id~~~~~~~v~~~i~~i~~ 232 (241)
T 2ocp_A 214 LDVNDDFSEEVTKQEDLMR 232 (241)
T ss_dssp EECCSCTTTCHHHHHHHHH
T ss_pred EECCCChhhCHHHHHHHHH
Confidence 9999999888777766654
No 96
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=99.00 E-value=7e-10 Score=93.37 Aligned_cols=167 Identities=14% Similarity=0.160 Sum_probs=88.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCC-CeechhHHHHHHccC---CCh----HHHHHHHHHHCCCCCCHH--------
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEV-PHISMGSLVRQELSP---RSA----LYKQIANAVNEGKLVPED-------- 125 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~-~~is~~dllr~~~~~---~~~----~g~~i~~~l~~g~~~~~~-------- 125 (273)
++..|+|+||+||||||+++.|++.++- ...+.....+....+ +.. -...+...+..+..+...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~~~~~~le~~~~~~~~yg 86 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAIKDGKMLEYAEYVGNYYG 86 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHHhcCcEEEEEEEccccCC
Confidence 5778999999999999999999998853 222221111110000 000 012333334444322110
Q ss_pred HHHHHHHHHHHhcccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEcc-CHHHHHHHHhcCCcCCCcccccccCCCCC
Q 024067 126 VIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKS-IEDQLVKRNLESEAFSPHKEFLRLGGARF 204 (273)
Q Consensus 126 ~~~~ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~-~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~ 204 (273)
+....+.+.+.. +..+|+|..+....+ +........+|++.. +.+++.+|+..|..
T Consensus 87 ~~~~~i~~~l~~-----g~~vild~~~~g~~~---~~~~~~~~~~i~i~~ps~~~l~~Rl~~R~~--------------- 143 (208)
T 3tau_A 87 TPLEYVEEKLAA-----GVDIFLEIEVQGAMQ---VRKAMPEGIFIFLTPPDLSELKNRIIGRGT--------------- 143 (208)
T ss_dssp EEHHHHHHHHHT-----TCCEEEECCHHHHHH---HHHHCTTSEEEEEECTTTTTSSCC---------------------
T ss_pred CcHHHHHHHHHc-----CCeEEEEeeHHHHHH---HHHhCCCeEEEEEeCCCHHHHHHHHHhcCC---------------
Confidence 001223444444 467899986544333 222222224555554 48899999988863
Q ss_pred CCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhcC
Q 024067 205 SAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQH 261 (273)
Q Consensus 205 ~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~~ 261 (273)
++++.+++|+....... .++...+ ++.+| .++++++++|.+++....
T Consensus 144 ---~~~e~i~~Rl~~~~~e~----~~~~~~d-~vivN--~~~~~~~~~l~~~i~~~~ 190 (208)
T 3tau_A 144 ---ESMEVVEERMETAKKEI----EMMASYD-YAVVN--DVVANAVQKIKGIVETEH 190 (208)
T ss_dssp ----CCHHHHHHHHHHHHHH----HHGGGSS-EEEEC--SSHHHHHHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHHHHHH----HhhccCC-EEEEC--cCHHHHHHHHHHHHHHHH
Confidence 23467888887765432 2333333 44444 369999999999997653
No 97
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=98.98 E-value=1.4e-09 Score=90.41 Aligned_cols=161 Identities=11% Similarity=0.084 Sum_probs=98.0
Q ss_pred EEEEcCCCCChhHHHHHHHHHhCC-CeechhHHHHHHccCCC----h----HHHHHHHHHHCCCCCCHH--------HHH
Q 024067 66 WVLIGDPGVKKHVYADNLSKLLEV-PHISMGSLVRQELSPRS----A----LYKQIANAVNEGKLVPED--------VIF 128 (273)
Q Consensus 66 Ivi~G~pGSGKsT~a~~La~~~g~-~~is~~dllr~~~~~~~----~----~g~~i~~~l~~g~~~~~~--------~~~ 128 (273)
|||+||+||||+|+++.|.+++.- ..+++...-|. ..++. . .-+++.+++.+|..+... +..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~-pR~gE~~G~dY~Fvs~~eF~~~i~~g~flE~~~~~g~~YGt~~ 82 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRT-PRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGSTV 82 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSC-CCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccC-CCCCCcCCceeEeecHHHHHHHHHcCCEEEEEEEcCceeeeec
Confidence 789999999999999999988742 22333222221 11111 1 124667777777665431 112
Q ss_pred HHHHHHHHhcccCCcceEEEeCCCCCHHHHHHHHhh--CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCC
Q 024067 129 ALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQI--VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSA 206 (273)
Q Consensus 129 ~ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~--~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~ 206 (273)
..+...+.. +..+|+|.-+....| +... ..+..++.+-.+.+++.+|+.+|+.
T Consensus 83 ~~v~~~l~~-----g~~vil~id~~g~~~---~k~~~~~~~~~Ifi~pps~e~L~~RL~~Rg~----------------- 137 (186)
T 1ex7_A 83 ASVKQVSKS-----GKTCILDIDMQGVKS---VKAIPELNARFLFIAPPSVEDLKKRLEGRGT----------------- 137 (186)
T ss_dssp HHHHHHHHH-----TSEEEEECCHHHHHH---HHTCGGGCCEEEEEECSCHHHHHHHHHHHCC-----------------
T ss_pred ceeeehhhC-----CCEEEecCCHHHHHH---HHHhcccCceEEEEeCCCHHHHHHHHHhcCC-----------------
Confidence 344455554 367899976544443 3322 1344555566678999999999873
Q ss_pred CCcHHHHHHHHHHHHHhhHHHHHHHHhcC-cEEEEeCCCChhHHHHHHHHHHHh
Q 024067 207 ADAASAWKEKFRIYAEQGKSLEDYYSKQR-KLLNFQVAAAPGETWQGLLSALHL 259 (273)
Q Consensus 207 ~d~~e~~~~rl~~y~~~~~~l~~~y~~~~-~~~~id~~~s~~ev~~~I~~~l~~ 259 (273)
++++.+++|+........ +..... ..+.+| .+.++.+++|.++|..
T Consensus 138 -e~~e~i~~Rl~~a~~e~~----~~~~~~fD~vIvN--ddle~a~~~l~~iI~a 184 (186)
T 1ex7_A 138 -ETEESINKRLSAAQAELA----YAETGAHDKVIVN--DDLDKAYKELKDFIFA 184 (186)
T ss_dssp -SCHHHHHHHHHHHHHHHH----HHTTTCSSEEEEC--SSHHHHHHHHHHHHTT
T ss_pred -CCHHHHHHHHHHHHHHHh----hccccCCcEEEEC--cCHHHHHHHHHHHHHh
Confidence 356789999987765432 111111 134444 5799999999988853
No 98
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=98.91 E-value=3.5e-09 Score=102.27 Aligned_cols=164 Identities=12% Similarity=0.112 Sum_probs=85.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC----C--CeechhHHHHHHccCCChHHHH-HHHHHHCCCCCCHHHHHHHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE----V--PHISMGSLVRQELSPRSALYKQ-IANAVNEGKLVPEDVIFALLSK 133 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g----~--~~is~~dllr~~~~~~~~~g~~-i~~~l~~g~~~~~~~~~~ll~~ 133 (273)
.+++.|+|+|+|||||||+|+.|+++++ . .+++. |.++..+..+..+... -.+.+ ..+..++..
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~-D~ir~~l~~~~~f~~~er~~~i--------~ri~~v~~~ 464 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLG-DTVRHELSSELGFTREDRHTNI--------QRIAFVATE 464 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEH-HHHHHHTCTTCCCSHHHHHHHH--------HHHHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECc-HHHHHHhccccCCChhHHHHHH--------HHHHHHHHH
Confidence 4578899999999999999999999986 3 45654 4555543322111000 00000 011123333
Q ss_pred HHHhcccCCcceEEEeCCCCCHHHHHHHHhh---CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcH
Q 024067 134 RLEEGYYRGESGFILDGIPRTRIQAEILDQI---VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAA 210 (273)
Q Consensus 134 ~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~---~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~ 210 (273)
.+.. +..+|.|.+-.-....+.+... ..++++|+|+++.+++.+|..... |..
T Consensus 465 ~~~~-----g~~VI~~~is~~~~~R~~~r~l~~~~g~~~~V~Lda~~ev~~~R~~r~l--------~~~----------- 520 (573)
T 1m8p_A 465 LTRA-----GAAVIAAPIAPYEESRKFARDAVSQAGSFFLVHVATPLEHCEQSDKRGI--------YAA----------- 520 (573)
T ss_dssp HHHT-----TCEEEEECCCCCHHHHHHHHHHHHTTSEEEEEEECCCHHHHHHHCSSCH--------HHH-----------
T ss_pred HHhC-----CCEEEEEcCCCcHHHHHHHHHHHHhcCCeEEEEEeCCHHHHHHHhcccc--------hhh-----------
Confidence 2222 3456666432112222222211 134689999999999999953211 000
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCC-ChhHHHHHHHHHHHhcC
Q 024067 211 SAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAA-APGETWQGLLSALHLQH 261 (273)
Q Consensus 211 e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~-s~~ev~~~I~~~l~~~~ 261 (273)
.-...+..+.... ..||....--+.||++. +++++.++|...|..+.
T Consensus 521 -~~~~~i~~~~~~r---~~~~~p~~~dl~IDts~~s~eevv~~Il~~l~~~~ 568 (573)
T 1m8p_A 521 -ARRGEIKGFTGVD---DPYETPEKADLVVDFSKQSVRSIVHEIILVLESQG 568 (573)
T ss_dssp -HHTTSSSSCBTTT---BCCCCCSSCSEEECTTTSCHHHHHHHHHHHHHHTT
T ss_pred -hhHHHHHHHHhcc---ccccccCCCCEEEECCCCCHHHHHHHHHHHHHhcC
Confidence 0000000000000 01221111236789875 99999999999998754
No 99
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=98.87 E-value=4.4e-09 Score=91.35 Aligned_cols=120 Identities=13% Similarity=0.187 Sum_probs=68.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHH-Hcc--CCChHHHHHHH---H-H-----HCCCCCCHHHHHHHH
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQ-ELS--PRSALYKQIAN---A-V-----NEGKLVPEDVIFALL 131 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~-~~~--~~~~~g~~i~~---~-l-----~~g~~~~~~~~~~ll 131 (273)
+.|+|+|||||||||+|+.|+++++++++++|++... ... ...+..++... . + ..+ .+......+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~-~~~~~~f~~~~ 80 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEG-ILDAESAHRRL 80 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGC-SCCHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeeccccc-cccHHHHHHHH
Confidence 5789999999999999999999999999999886421 110 00000000000 0 0 000 12333344444
Q ss_pred HHHHHhcccCCcceEEEeCCCCCHHHHH-HHHhh---CCCc-eEEEEccCH-HHHHHHHhcCC
Q 024067 132 SKRLEEGYYRGESGFILDGIPRTRIQAE-ILDQI---VDVD-LVINFKSIE-DQLVKRNLESE 188 (273)
Q Consensus 132 ~~~l~~~~~~~~~g~IlDg~P~~~~qa~-~l~~~---~~~d-~vI~L~~~~-e~l~~Rl~~R~ 188 (273)
...+ .. ...+..+|++|... ...+ .+... ...+ .+|+|++|. +++.+|+.+|.
T Consensus 81 ~~~i-~~-~~~g~~vIl~gg~~--~~~~~~~~~~~~~~~~~~~~i~l~~~~~e~l~~Rl~~R~ 139 (253)
T 2ze6_A 81 IFEV-DW-RKSEEGLILEGGSI--SLLNCMAKSPFWRSGFQWHVKRLRLGDSDAFLTRAKQRV 139 (253)
T ss_dssp HHHH-HT-TTTSSEEEEEECCH--HHHHHHHHCTTTTSSCEEEEEECCCCCHHHHHHHHHHHH
T ss_pred HHHH-HH-HhCCCCeEEeccHH--HHHHHHHhcccccccCceEEEEecchhHHHHHHHHHHHH
Confidence 4444 21 12345677775332 2222 22220 1122 689999997 99999998875
No 100
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.80 E-value=4.3e-08 Score=80.46 Aligned_cols=168 Identities=16% Similarity=0.157 Sum_probs=89.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCC--eechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhc
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVP--HISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEG 138 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~--~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~ 138 (273)
.++..|+|+|+|||||||+++.|+..++.. +++.+++... .......+ ++.+.. .+...+.+.+.......
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~~-~~~~~~~~-----~~~~~~-~~~~~v~~~l~~~~~~~ 79 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGY-IKHGRIDP-----WLPQSH-QQNRMIMQIAADVAGRY 79 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHT-CCSSCCCT-----TSSSHH-HHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchhhh-hhcccccC-----Cccchh-hhhHHHHHHHHHHHHHH
Confidence 357889999999999999999999987554 7777776542 11110000 000000 00112222221111100
Q ss_pred ccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHH
Q 024067 139 YYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFR 218 (273)
Q Consensus 139 ~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~ 218 (273)
...+..+++|++.... +...+.....+-.++++.++.++++.|+..|.... . .+++.+++.++
T Consensus 80 -~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~--------------l-ld~~~~~~~~~ 142 (191)
T 1zp6_A 80 -AKEGYFVILDGVVRPD-WLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDS--------------L-SDPLVVADLHS 142 (191)
T ss_dssp -HHTSCEEEECSCCCTT-TTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTS--------------C-CCHHHHHHHHH
T ss_pred -hccCCeEEEeccCcHH-HHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCc--------------c-CCHHHHHHHHH
Confidence 0123457889865432 22223222223358999999999999998875211 1 12333332222
Q ss_pred HHHHhhHHHHHHHHhcCcEEEEeCC-CChhHHHHHHHHHHHhcC
Q 024067 219 IYAEQGKSLEDYYSKQRKLLNFQVA-AAPGETWQGLLSALHLQH 261 (273)
Q Consensus 219 ~y~~~~~~l~~~y~~~~~~~~id~~-~s~~ev~~~I~~~l~~~~ 261 (273)
.+ .+ .|.. +. +.||++ .+++++++.|.+.+....
T Consensus 143 ~~----~~---l~~~-~~-~~i~t~~~~~~~~~~~i~~~l~~~~ 177 (191)
T 1zp6_A 143 QF----AD---LGAF-EH-HVLPVSGKDTDQALQSAINALQSGR 177 (191)
T ss_dssp HT----TC---CGGG-GG-GEEECTTCCTTTTTTTTHHHHHHTT
T ss_pred HH----hc---cCcc-cc-cEEECCCCCHHHHHHHHHHHHHhhh
Confidence 21 11 1221 12 345655 689999999999987653
No 101
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.74 E-value=1e-07 Score=78.33 Aligned_cols=116 Identities=16% Similarity=0.095 Sum_probs=64.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCC-CeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccC
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEV-PHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~-~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~ 141 (273)
+..|+|+||+||||||+++.|++.++. .+++.+++... ...+. ..+.. ...+...+.+.+....... ..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~~-~~~~~-~~~~~-------~~~~~~~~~~~l~~~~~~~-~~ 71 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHM-VVGGY-RPPWE-------SDELLALTWKNITDLTVNF-LL 71 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTT-CCTTC-CCGGG-------CHHHHHHHHHHHHHHHHHH-HH
T ss_pred CeEEEEECCCCCcHHHHHHHHhcccCCeEEEcccchhhh-hcccc-ccCcc-------chhHHHHHHHHHHHHHHHH-Hh
Confidence 457889999999999999999998865 78887765432 11100 00000 0000111222222211110 01
Q ss_pred CcceEEEeCCCCCHHHHHHHHhh----C-C-CceEEEEccCHHHHHHHHhcCCc
Q 024067 142 GESGFILDGIPRTRIQAEILDQI----V-D-VDLVINFKSIEDQLVKRNLESEA 189 (273)
Q Consensus 142 ~~~g~IlDg~P~~~~qa~~l~~~----~-~-~d~vI~L~~~~e~l~~Rl~~R~~ 189 (273)
....+|+|++- .....+.+... . . .-.+++|.++.+++.+|...|..
T Consensus 72 ~~~~~ild~~~-~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~ 124 (189)
T 2bdt_A 72 AQNDVVLDYIA-FPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKK 124 (189)
T ss_dssp TTCEEEEESCC-CHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC
T ss_pred cCCcEEEeecc-CHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccc
Confidence 23568999853 22222222211 1 1 33478899999999999988754
No 102
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.72 E-value=1.9e-08 Score=82.84 Aligned_cols=164 Identities=10% Similarity=0.018 Sum_probs=66.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCC-CeechhHHHHHHccC----CCh----HHHHHHHHHHCCCCCCHH--------H
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLLEV-PHISMGSLVRQELSP----RSA----LYKQIANAVNEGKLVPED--------V 126 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~g~-~~is~~dllr~~~~~----~~~----~g~~i~~~l~~g~~~~~~--------~ 126 (273)
..++|+||+||||||+++.|+..+.- ..++.....+. ... +.. ....+..++.++..+... .
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~-~~~ge~~g~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~yg~ 80 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRT-PRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGS 80 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSC-CCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccC-CCCCccCCeeeeecCHHHHHHHHhhcceeeEEEEeceeccC
Confidence 46889999999999999999987641 00000000000 000 000 012233333333322100 0
Q ss_pred HHHHHHHHHHhcccCCcceEEEeCCCCCHHHHHHHHh-hCCCceEEEEccCH-HHHHHHHhcCCcCCCcccccccCCCCC
Q 024067 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQ-IVDVDLVINFKSIE-DQLVKRNLESEAFSPHKEFLRLGGARF 204 (273)
Q Consensus 127 ~~~ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~-~~~~d~vI~L~~~~-e~l~~Rl~~R~~~~~~~~~y~~~~~~~ 204 (273)
-...+.+.+.. +..+|+|..+ .-+..+.. ......+|++.+|. +++.+|+.+|..
T Consensus 81 ~~~~i~~~l~~-----g~~~il~~~~---~g~~~l~~~~~~~~~~i~i~~p~~~~l~~Rl~~Rg~--------------- 137 (186)
T 3a00_A 81 TVASVKQVSKS-----GKTCILDIDM---QGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGT--------------- 137 (186)
T ss_dssp EHHHHHHHHHT-----TCEEEEECCH---HHHHHHHTCGGGCCEEEEEECSCC---------------------------
T ss_pred cHHHHHHHHHc-----CCeEEEEEcH---HHHHHHHHhcCCCeEEEEEECcCHHHHHHHHHhcCC---------------
Confidence 01223344443 3678888543 23333443 22223578888865 999999998863
Q ss_pred CCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHh
Q 024067 205 SAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHL 259 (273)
Q Consensus 205 ~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~ 259 (273)
++++.+++|+........ ..+...-..+.+| .+.++..++|.+.+..
T Consensus 138 ---~~~~~i~~rl~~~~~~~~---~~~~~~~d~vi~n--d~~~~a~~~l~~~i~~ 184 (186)
T 3a00_A 138 ---ETEESINKRLSAAQAELA---YAETGAHDKVIVN--DDLDKAYKELKDFIFA 184 (186)
T ss_dssp ---------------------------CCCCSEEEEC--SSHHHHHHHHHHHHTT
T ss_pred ---CCHHHHHHHHHHHHHHHH---hhcccCCcEEEEC--cCHHHHHHHHHHHHHh
Confidence 234567778776654321 1111111244444 3899999999988854
No 103
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.67 E-value=6.5e-07 Score=76.87 Aligned_cols=174 Identities=13% Similarity=0.098 Sum_probs=90.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCC----------eechhHHHHHHccCCChHHHHHHHHHHCCC-----CCCHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVP----------HISMGSLVRQELSPRSALYKQIANAVNEGK-----LVPED 125 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~----------~is~~dllr~~~~~~~~~g~~i~~~l~~g~-----~~~~~ 125 (273)
.++.+|.|+||.||||||+++.|+..+|.. +++.+.+.+ .-...+.+........ ....+
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~~~-----~l~~~~~~~~~~~~~~~~~~~~~~~~ 97 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYK-----VLTAEQKAKALKGQYNFDHPDAFDND 97 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGGBC-----CCCHHHHHHHHTTCCCTTSGGGBCHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcCcc-----ccCHhHhhhhhccCCCCCCcccccHH
Confidence 357889999999999999999999998865 566654322 1112222221111100 01112
Q ss_pred HHHHHHHHHHHhcc--------------------cCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHh
Q 024067 126 VIFALLSKRLEEGY--------------------YRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNL 185 (273)
Q Consensus 126 ~~~~ll~~~l~~~~--------------------~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~ 185 (273)
.+.+.+.. +.... ......+|+||. ....... +.. ..+.+|++.++++..+.|..
T Consensus 98 ~~~~~L~~-l~~~~~~~~~~ls~g~~~r~~~~~~~~~~~~lilDg~-~~~~~~~-l~~--~~~~~i~v~th~~~~~~r~~ 172 (245)
T 2jeo_A 98 LMHRTLKN-IVEGKTVEVPTYDFVTHSRLPETTVVYPADVVLFEGI-LVFYSQE-IRD--MFHLRLFVDTDSDVRLSRRV 172 (245)
T ss_dssp HHHHHHHH-HHTTCCEEECCEETTTTEECSSCEEECCCSEEEEECT-TTTTSHH-HHT--TCSEEEEEECCHHHHHHHHH
T ss_pred HHHHHHHH-HHCCCCeecccccccccCccCceEEecCCCEEEEeCc-cccccHH-HHH--hcCeEEEEECCHHHHHHHHH
Confidence 23333332 21110 112346889983 2221122 222 25889999999877776665
Q ss_pred cCCcCCCcccccccCCCCCCCCCcHHHHHHHHHHHHHhhH-HHHHH---HHhcCcEEE---EeCCCChhHHHHHHHHHHH
Q 024067 186 ESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAEQGK-SLEDY---YSKQRKLLN---FQVAAAPGETWQGLLSALH 258 (273)
Q Consensus 186 ~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~y~~~~~-~l~~~---y~~~~~~~~---id~~~s~~ev~~~I~~~l~ 258 (273)
.|.... | .+.+.+.+++. .... +...| .++...++. +|++.+++++.++|...+.
T Consensus 173 ~r~~~~--G-------------~~~e~~~~~~~---~~~~~~~~~~i~p~~~~aD~vi~~~~dn~~~~~~l~~~i~~~~~ 234 (245)
T 2jeo_A 173 LRDVRR--G-------------RDLEQILTQYT---TFVKPAFEEFCLPTKKYADVIIPRGVDNMVAINLIVQHIQDILN 234 (245)
T ss_dssp HHHTC------------------CHHHHHHHHH---HTHHHHHHHHTGGGGGGCSEEEESSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHc--C-------------CCHHHHHHHHH---HhhhHhHHHhCCcchhcceEEEcCCCCccHHHHHHHHHHHHHHh
Confidence 554311 1 12344444433 2111 11222 122222332 2656689999999999987
Q ss_pred hcCC
Q 024067 259 LQHM 262 (273)
Q Consensus 259 ~~~~ 262 (273)
.+..
T Consensus 235 ~~~~ 238 (245)
T 2jeo_A 235 GDIC 238 (245)
T ss_dssp TCC-
T ss_pred cchh
Confidence 6543
No 104
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=98.66 E-value=5.7e-08 Score=87.65 Aligned_cols=29 Identities=17% Similarity=0.029 Sum_probs=26.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCC
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEV 89 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g~ 89 (273)
.+++.|+|.|+.||||||+++.|++.++.
T Consensus 5 ~~~~fI~~EG~dGaGKTT~~~~La~~L~~ 33 (334)
T 1p6x_A 5 VTIVRIYLDGVYGIGKSTTGRVMASAASG 33 (334)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 46789999999999999999999999864
No 105
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.64 E-value=1.4e-07 Score=78.72 Aligned_cols=39 Identities=18% Similarity=0.235 Sum_probs=33.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC--CCeechhHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE--VPHISMGSLVR 99 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g--~~~is~~dllr 99 (273)
.++..|.|+|++||||||+++.|+..++ +.+++.+..++
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~~ 44 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYYK 44 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCBC
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCcccc
Confidence 3567899999999999999999999998 88888876553
No 106
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=98.61 E-value=5.9e-07 Score=75.26 Aligned_cols=112 Identities=8% Similarity=0.144 Sum_probs=70.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC---CCeechhHHHHHHccC--C---ChH----------HHHHH----HHHHCC
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLE---VPHISMGSLVRQELSP--R---SAL----------YKQIA----NAVNEG 119 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g---~~~is~~dllr~~~~~--~---~~~----------g~~i~----~~l~~g 119 (273)
.+++|+|+|.|||||+|++..|.+.+| ++.++++|.++++... + ..+ +..+. ++...|
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~~~a~~~gl~~~~~l~~~~ykE~~R~~m~~~g~~~R~~d 89 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWGEEKRQAD 89 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHHHHHHTTTCCCC-------CCSSHHHHHHHHHHHHHHHC
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHHHHHHHcCCCchhhcchhhhHHHHHHHHHHHHHHHHhcC
Confidence 356888999999999999999999885 7789999999853321 0 110 00100 000001
Q ss_pred CCCCHHHHHHHHHHHHHhcccCCcceEEEeCCCCCHHHHHHHHhhCCC-ceEEEEccCHHHHHHHH
Q 024067 120 KLVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDV-DLVINFKSIEDQLVKRN 184 (273)
Q Consensus 120 ~~~~~~~~~~ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~-d~vI~L~~~~e~l~~Rl 184 (273)
. ..++.++.+ . .....|||||. |.....+.+.+..+. -.+|.+.+++++..+|.
T Consensus 90 ~----~~~~~~~~~---~---~~~~~vII~dv-R~~~Ev~~fr~~~g~~~~iirI~as~~~R~~Rg 144 (202)
T 3ch4_B 90 P----GFFCRKIVE---G---ISQPIWLVSDT-RRVSDIQWFREAYGAVTQTVRVVALEQSRQQRG 144 (202)
T ss_dssp T----TTTHHHHSB---T---CCCSEEEECCC-CSHHHHHHHHHHHGGGEEEEEEEECHHHHHHTT
T ss_pred c----hHHHHHHHH---h---cCCCcEEEeCC-CCHHHHHHHHHhCCCcEEEEEEECCHHHHHHHh
Confidence 0 011111111 1 12357999987 667777777654332 35899999999999994
No 107
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.57 E-value=2.9e-07 Score=78.24 Aligned_cols=166 Identities=15% Similarity=0.078 Sum_probs=68.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHH-HHhCCCeechhHHHHHHccCC----Ch----HHHHHHHHHHCCCCCCH--------
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLS-KLLEVPHISMGSLVRQELSPR----SA----LYKQIANAVNEGKLVPE-------- 124 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La-~~~g~~~is~~dllr~~~~~~----~~----~g~~i~~~l~~g~~~~~-------- 124 (273)
++..|+|+||+||||||+++.|+ ..+...+...+...+ ....+ .. ....+......+.....
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTR-AARKGEKEGKDYYFVDREEFLRLCSNGEIIEHAEVFGNFY 104 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC----CEEECCCEESS-CCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCC-CCCccccCCCeEEEecHHHhhhhhhcCceehhhhhccccC
Confidence 56789999999999999999999 766321111110000 00000 00 00122222222221100
Q ss_pred HHHHHHHHHHHHhcccCCcceEEEeCCCCCHHHHHHHHhhC--CCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCC
Q 024067 125 DVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIV--DVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGA 202 (273)
Q Consensus 125 ~~~~~ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~--~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~ 202 (273)
......+.+.+.. ...+|+|..+.. ...+.... .+..++...++.+++.+|+..|..
T Consensus 105 ~~~~~~i~~~~~~-----~~~vild~~~~g---~~~~~~~~~~~~~~v~v~~~~~~~l~~Rl~~R~~------------- 163 (231)
T 3lnc_A 105 GVPRKNLEDNVDK-----GVSTLLVIDWQG---AFKFMEMMREHVVSIFIMPPSMEELRRRLCGRRA------------- 163 (231)
T ss_dssp EEECTTHHHHHHH-----TCEEEEECCHHH---HHHHHHHSGGGEEEEEEECSCHHHHHHC-------------------
T ss_pred CCCHHHHHHHHHc-----CCeEEEEcCHHH---HHHHHHhcCCCeEEEEEECCcHHHHHHHHHHcCC-------------
Confidence 0000112222332 245777754322 22233223 223444556689999999988752
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhcC
Q 024067 203 RFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQH 261 (273)
Q Consensus 203 ~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~~ 261 (273)
++++.+++|+...... .+++...+ ++ |+.+ +++++.++|...+....
T Consensus 164 -----~~~~~i~~rl~~~~~~----~~~~~~~d-~v-I~n~-~~e~~~~~l~~~i~~~~ 210 (231)
T 3lnc_A 164 -----DDSEVVEARLKGAAFE----ISHCEAYD-YV-IVNE-DIEETADRISNILRAEQ 210 (231)
T ss_dssp -------------CHHHHHHH----HTTGGGSS-EE-EECS-SHHHHHHHHHHHHHHHH
T ss_pred -----CCHHHHHHHHHHHHHH----HhhhcCCe-EE-EECc-CHHHHHHHHHHHHHHHh
Confidence 2344566666654332 22233333 33 3333 79999999999987653
No 108
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.52 E-value=4.3e-07 Score=85.58 Aligned_cols=186 Identities=13% Similarity=0.137 Sum_probs=93.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCC-----eechhHHHHHHccCCChHHHHHHHHHHCCCCC----CHHHHHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVP-----HISMGSLVRQELSPRSALYKQIANAVNEGKLV----PEDVIFALL 131 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~-----~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~----~~~~~~~ll 131 (273)
.++..|+++|.|||||||++++|++.++.. .++.+++.++........ +++..+... -.......+
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~-----~ifd~~g~~~~r~re~~~~~~l 111 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSF-----EFFLPDNEEGLKIRKQCALAAL 111 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCG-----GGGCTTCHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcc-----cccCCCCHHHHHHHHHHHHHHH
Confidence 356789999999999999999999988644 444555443321110000 011111000 001111122
Q ss_pred ---HHHHHhcccCCcceEEEeCCCCCHHHHHHHHhhC---CCceEEEEc---cCHHHHHHHHhcCCcCCCcccccccCCC
Q 024067 132 ---SKRLEEGYYRGESGFILDGIPRTRIQAEILDQIV---DVDLVINFK---SIEDQLVKRNLESEAFSPHKEFLRLGGA 202 (273)
Q Consensus 132 ---~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~---~~d~vI~L~---~~~e~l~~Rl~~R~~~~~~~~~y~~~~~ 202 (273)
...+.. .++.++|+|+...+..+.+.+.... .. .+++|+ .+++.+..|+..+.... -.| .
T Consensus 112 ~~~~~~l~~---~~G~~vV~D~tn~~~~~R~~~~~~~~~~~~-~vv~l~~~~~~~~~i~~r~~~~~~~r---p~~----~ 180 (469)
T 1bif_A 112 NDVRKFLSE---EGGHVAVFDATNTTRERRAMIFNFGEQNGY-KTFFVESICVDPEVIAANIVQVKLGS---PDY----V 180 (469)
T ss_dssp HHHHHHHHT---TCCSEEEEESCCCSHHHHHHHHHHHHHHTC-EEEEEEECCCCHHHHHHHHHHHTTTS---TTT----T
T ss_pred HHHHHHHHh---CCCCEEEEeCCCCCHHHHHHHHHHHHhcCC-cEEEEEEECCCHHHHHHHHHHhhhcC---Ccc----c
Confidence 222221 2356799999888887766653221 22 345555 34777777776443211 000 0
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhHHHHHHHHh-cCcEEEEeCC------CChhHHHHHHHHHHHhcCC
Q 024067 203 RFSAADAASAWKEKFRIYAEQGKSLEDYYSK-QRKLLNFQVA------AAPGETWQGLLSALHLQHM 262 (273)
Q Consensus 203 ~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~-~~~~~~id~~------~s~~ev~~~I~~~l~~~~~ 262 (273)
....++..+.+.+|+..|....+++.+.-.. ...+..+|+. +...-+...|.-+|..-|.
T Consensus 181 ~~~~e~~~~~~~~R~~~y~~~ye~l~~~~~~~~~~ik~~d~~~~~~~~~~~g~~~~~~~~~l~n~~~ 247 (469)
T 1bif_A 181 NRDSDEATEDFMRRIECYENSYESLDEEQDRDLSYIKIMDVGQSYVVNRVADHIQSRIVYYLMNIHV 247 (469)
T ss_dssp TSCHHHHHHHHHHHHHHHHTTCCCCCTTTTTTSCEEEEETTTTEEEEECCCSHHHHHHHHHHTTCCC
T ss_pred CCCHHHHHHHHHHHHHHhccEeEECCccccCCcceEEEEcCccceeccCccccchhhHHHHHhccCC
Confidence 0001122356667788887777666531111 1123334432 2345566666666655444
No 109
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.51 E-value=1.9e-07 Score=89.70 Aligned_cols=163 Identities=15% Similarity=0.125 Sum_probs=71.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC------CCeechhHHHHHHccCCChHHH-HHHHHHHCCCCCCHHHHHHHHHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLE------VPHISMGSLVRQELSPRSALYK-QIANAVNEGKLVPEDVIFALLSKR 134 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g------~~~is~~dllr~~~~~~~~~g~-~i~~~l~~g~~~~~~~~~~ll~~~ 134 (273)
++..|+|+|++||||||+++.|++.++ +.+++.+++.. .+...-.+.. .....+ ..+..++ +.
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~-~l~~~l~f~~~~r~~~~--------r~i~~v~-q~ 437 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRR-HLSSELGFSKAHRDVNV--------RRIGFVA-SE 437 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHH-HTTSSCCCSHHHHHHHH--------HHHHHHH-HH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHH-hhccccCCCHHHHHHHH--------HHHHHHH-HH
Confidence 578899999999999999999999984 34577765543 2211100000 000000 0011111 12
Q ss_pred HHhcccCCcceEEEeC-CCCCHHH--H-HHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcH
Q 024067 135 LEEGYYRGESGFILDG-IPRTRIQ--A-EILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAA 210 (273)
Q Consensus 135 l~~~~~~~~~g~IlDg-~P~~~~q--a-~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~ 210 (273)
+.. ....+|..+ .|..... + +.++... ..++|+|+++.+++.+|.. |.... ..
T Consensus 438 l~~----~~~ivi~~~~~~~~~~r~~~r~lL~~~g-~f~~V~L~~~~e~~~~R~~-r~l~~---------------~~-- 494 (552)
T 3cr8_A 438 ITK----NRGIAICAPIAPYRQTRRDVRAMIEAVG-GFVEIHVATPIETCESRDR-KGLYA---------------KA-- 494 (552)
T ss_dssp HHH----TTCEEEECCCCCCHHHHHHHHHHHHTTS-EEEEEEECC-----------------------------------
T ss_pred HHh----cCCEEEEecCCccHHHHHHHHHHHHHcC-CEEEEEEcCCHHHHHHhcc-ccccc---------------cc--
Confidence 221 123344443 2322211 1 2233222 3379999999999999964 22100 00
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCC-CChhHHHHHHHHHHHhcCC
Q 024067 211 SAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVA-AAPGETWQGLLSALHLQHM 262 (273)
Q Consensus 211 e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~-~s~~ev~~~I~~~l~~~~~ 262 (273)
....+..+... -..||....--+.||++ .+++++.++|...|..+..
T Consensus 495 --~~~~i~~l~~~---r~~~e~P~~adl~Idt~~~s~~e~v~~Il~~L~~~~~ 542 (552)
T 3cr8_A 495 --RAGLIPEFTGV---SDPYEVPETPELAIDTTGLAIDEAVQQILLKLEHEGY 542 (552)
T ss_dssp -----------------CCCCCCSSCSEEECCSSCCHHHHHHHHHHHHHHHTC
T ss_pred --cHhHHHHHHhc---cccccCCCCCCEEEECCCCCHHHHHHHHHHHHHhcCc
Confidence 00111111111 11234311112567876 6899999999999976643
No 110
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=98.48 E-value=2.5e-07 Score=81.90 Aligned_cols=38 Identities=11% Similarity=0.197 Sum_probs=31.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC-----CCeechhHHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLVR 99 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g-----~~~is~~dllr 99 (273)
+++.|.|+|++||||||+++.|++.+| +.+|++|++.+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r 46 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR 46 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhc
Confidence 567899999999999999999999988 78999998874
No 111
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.40 E-value=3.5e-07 Score=76.19 Aligned_cols=118 Identities=13% Similarity=0.115 Sum_probs=54.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh---CCC--eechhHHHHH---HccCCChHHHHHHHHHHCCCCCCHHHHHHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLL---EVP--HISMGSLVRQ---ELSPRSALYKQIANAVNEGKLVPEDVIFALLS 132 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~---g~~--~is~~dllr~---~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~ 132 (273)
.++..|.|+|++||||||+++.|+..+ +.. +++.|.+.+. ....+...+.. +.. |. +..+.+.+.+.
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~---~~~-~~-~d~~~l~~~v~ 94 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFE---YYY-LQ-WDVEWLTHQLF 94 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHHHHSSSSSCHHHH---HHH-TS-SCHHHHHHHTG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCHHHHHhcCCCCccC---CCc-cc-cCHHHHHHHHH
Confidence 467899999999999999999999976 443 3444544321 11122222221 111 11 12222222221
Q ss_pred HHHHh--------------------cccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCC
Q 024067 133 KRLEE--------------------GYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESE 188 (273)
Q Consensus 133 ~~l~~--------------------~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (273)
..+.. ........+|+||......+ +. ..+|.+|+++||.+++++|+..|.
T Consensus 95 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vIveg~~l~~~~---~~--~~~d~~i~v~~~~~~~~~R~~~R~ 165 (201)
T 1rz3_A 95 RQLKASHQLTLPFYDHETDTHSKRTVYLSDSDMIMIEGVFLQRKE---WR--PFFDFVVYLDCPREIRFARENDQV 165 (201)
T ss_dssp GGTTTCSEEEEEEEETTTTEEEEEEEECTTCSEEEEEETTTTSTT---TG--GGCSEEEEECCC------------
T ss_pred HHHhcCCccccCceeccCCCCCCceEEeCCCcEEEEechhhccHH---HH--hhcCEEEEEeCCHHHHHHHHhcCC
Confidence 11110 00112356888885422111 11 236899999999999999998875
No 112
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=98.39 E-value=1.2e-06 Score=79.15 Aligned_cols=29 Identities=21% Similarity=0.135 Sum_probs=26.1
Q ss_pred CCCeEEEEEcCCCCChhHHH-HHHHHHhCC
Q 024067 61 RRGVQWVLIGDPGVKKHVYA-DNLSKLLEV 89 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a-~~La~~~g~ 89 (273)
.+++.|+|.|+.||||||++ +.|++.++-
T Consensus 10 ~~~~~I~iEG~~GaGKTT~~~~~L~~~l~~ 39 (341)
T 1osn_A 10 MGVLRIYLDGAYGIGKTTAAEEFLHHFAIT 39 (341)
T ss_dssp EEEEEEEEEESSSSCTTHHHHHHHHTTTTS
T ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 46789999999999999999 999998864
No 113
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.36 E-value=2.2e-06 Score=70.06 Aligned_cols=29 Identities=21% Similarity=0.242 Sum_probs=25.0
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024067 60 PRRGVQWVLIGDPGVKKHVYADNLSKLLE 88 (273)
Q Consensus 60 ~~~~~~Ivi~G~pGSGKsT~a~~La~~~g 88 (273)
|.++..++|+||+||||||+++.|+..+.
T Consensus 2 ~~~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 2 SHMRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 34677899999999999999999999764
No 114
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=98.35 E-value=3.8e-07 Score=82.28 Aligned_cols=36 Identities=19% Similarity=0.282 Sum_probs=33.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSL 97 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dl 97 (273)
++..|+|+||+||||||++..||++++..+||+|.+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 456899999999999999999999999999998876
No 115
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=98.34 E-value=1.4e-05 Score=73.07 Aligned_cols=28 Identities=18% Similarity=0.084 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE 88 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g 88 (273)
.+++.|+|.|+.||||||+++.|++.++
T Consensus 47 ~~~~fIt~EG~dGsGKTT~~~~Lae~L~ 74 (376)
T 1of1_A 47 PTLLRVYIDGPHGMGKTTTTQLLVALGS 74 (376)
T ss_dssp CEEEEEEECSSTTSSHHHHHHHHHC---
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4688999999999999999999999875
No 116
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=98.31 E-value=1.2e-05 Score=72.25 Aligned_cols=28 Identities=18% Similarity=0.084 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE 88 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g 88 (273)
.+++.|+|.|+.||||||+++.|++.++
T Consensus 2 ~~~~fI~~EG~dGsGKTT~~~~La~~L~ 29 (331)
T 1e2k_A 2 PTLLRVYIDGPHGMGKTTTTQLLVALGS 29 (331)
T ss_dssp CEEEEEEECSCTTSSHHHHHHHHTC---
T ss_pred CccEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3678999999999999999999999875
No 117
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=98.30 E-value=3.8e-06 Score=74.54 Aligned_cols=165 Identities=7% Similarity=-0.055 Sum_probs=90.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCC---eechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhc
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVP---HISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEG 138 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~---~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~ 138 (273)
.++.|+|.|..||||||++++|.+.++-. ++.+. .+.++++. ..+ +......-
T Consensus 85 ~~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~~----------~Pt~eE~~------~~y--------l~R~~~~L 140 (304)
T 3czq_A 85 KRVMAVFEGRDAAGKGGAIHATTANMNPRSARVVALT----------KPTETERG------QWY--------FQRYVATF 140 (304)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEECC----------SCCHHHHT------SCT--------THHHHTTC
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEeC----------CcChHHHh------chH--------HHHHHHhc
Confidence 58999999999999999999999999543 33221 11122221 111 11111111
Q ss_pred ccCCcceEEEeCCCCC------------HH-------HHHHHHh----hCCCceEEEEccCHHHHHHHHhcCCcCCCccc
Q 024067 139 YYRGESGFILDGIPRT------------RI-------QAEILDQ----IVDVDLVINFKSIEDQLVKRNLESEAFSPHKE 195 (273)
Q Consensus 139 ~~~~~~g~IlDg~P~~------------~~-------qa~~l~~----~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~ 195 (273)
...+.-+|.|.+-.+ .. +...++. .+.|++.|+|+++.++..+|+..|..++...
T Consensus 141 -P~~G~IvIfDRswYs~v~~~rv~g~~~~~e~~~~~~~In~FE~~L~~~G~~~lKf~L~Is~eeq~kR~~~R~~dp~k~- 218 (304)
T 3czq_A 141 -PTAGEFVLFDRSWYNRAGVEPVMGFCTPDQYEQFLKEAPRFEEMIANEGIHLFKFWINIGREMQLKRFHDRRHDPLKI- 218 (304)
T ss_dssp -CCTTCEEEEEECGGGGTTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEECCHHHHHHHHHHHHHCTTTG-
T ss_pred -ccCCeEEEEECCcchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCeeEEEEEECCHHHHHHHHHHhhcCcccc-
Confidence 112344677754321 11 1122211 2468999999999999999998776433110
Q ss_pred ccccCCCCCCCCCcHHHHH--HHHHHHHHhhHHHHHHHH-hcCcEEEEeCCCC---hhHHHHHHHHHHHhcCC
Q 024067 196 FLRLGGARFSAADAASAWK--EKFRIYAEQGKSLEDYYS-KQRKLLNFQVAAA---PGETWQGLLSALHLQHM 262 (273)
Q Consensus 196 ~y~~~~~~~~~~d~~e~~~--~rl~~y~~~~~~l~~~y~-~~~~~~~id~~~s---~~ev~~~I~~~l~~~~~ 262 (273)
+ .-+...++ +.+..|.+........-. ....|+.|+++.. .-.+.+.|++.|.....
T Consensus 219 -W---------k~s~~D~~~~~~~~~y~~a~~~ml~~T~t~~apW~vIda~dk~~arl~v~~~Il~~l~~~~~ 281 (304)
T 3czq_A 219 -W---------KLSPMDIAALSKWDDYTGKRDRMLKETHTEHGPWAVIRGNDKRRSRINVIRHMLTKLDYDGK 281 (304)
T ss_dssp -G---------GCCHHHHHGGGGHHHHHHHHHHHHHHHCCSSSCEEEEECSSHHHHHHHHHHHHHHHCCCTTC
T ss_pred -c---------CCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCEEEEECCCcchHHHHHHHHHHHHHhhccC
Confidence 0 01222233 233444444333322111 1235999999874 35667777777665544
No 118
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.21 E-value=2.1e-06 Score=71.75 Aligned_cols=37 Identities=22% Similarity=0.300 Sum_probs=30.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC-----CCeechhHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSL 97 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g-----~~~is~~dl 97 (273)
.++.+|.|+||+||||||+++.|+..+. ..+|+.++.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~ 61 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGF 61 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCC
Confidence 4688999999999999999999999885 556666543
No 119
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.20 E-value=1.2e-05 Score=67.11 Aligned_cols=30 Identities=23% Similarity=0.173 Sum_probs=26.1
Q ss_pred CCCCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024067 59 PPRRGVQWVLIGDPGVKKHVYADNLSKLLE 88 (273)
Q Consensus 59 ~~~~~~~Ivi~G~pGSGKsT~a~~La~~~g 88 (273)
++.++..|+|+||+||||||+++.|.+.+.
T Consensus 15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 15 YFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp -CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 345778899999999999999999999875
No 120
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.15 E-value=1.4e-05 Score=67.71 Aligned_cols=168 Identities=10% Similarity=0.092 Sum_probs=87.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCC--Ceech--hH-HHHHHccCCCh----HHHHHHHHHHCCCCCCH--------
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEV--PHISM--GS-LVRQELSPRSA----LYKQIANAVNEGKLVPE-------- 124 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~--~~is~--~d-llr~~~~~~~~----~g~~i~~~l~~g~~~~~-------- 124 (273)
++..++|+||+||||||+.+.|+..+.. ...++ .. -.+.....+-. ....+......|.....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~~~y 94 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYY 94 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHHhccC
Confidence 5778999999999999999999998652 11111 00 00000000000 01122222222111000
Q ss_pred HHHHHHHHHHHHhcccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCC
Q 024067 125 DVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARF 204 (273)
Q Consensus 125 ~~~~~ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~ 204 (273)
.+-...+...+.. +.-+|+|.-|....+.. +.+...-.+|+..-+.+.+.+|+..|+
T Consensus 95 g~~~~~v~~~l~~-----G~illLDLD~~~~~~i~--~~l~~~~tI~i~th~~~~l~~Rl~~rG---------------- 151 (219)
T 1s96_A 95 GTSREAIEQVLAT-----GVDVFLDIDWQGAQQIR--QKMPHARSIFILPPSKIELDRRLRGRG---------------- 151 (219)
T ss_dssp EEEHHHHHHHHTT-----TCEEEEECCHHHHHHHH--HHCTTCEEEEEECSSHHHHHHHHHTTS----------------
T ss_pred CCCHHHHHHHHhc-----CCeEEEEECHHHHHHHH--HHccCCEEEEEECCCHHHHHHHHHHcC----------------
Confidence 0001123333433 46789994433333322 222222234444557788999997776
Q ss_pred CCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhcC
Q 024067 205 SAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQH 261 (273)
Q Consensus 205 ~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~~ 261 (273)
.++++.+.+|+....... .++...+ .+.+| .+.++.+++|.+++....
T Consensus 152 --~~~~e~i~~rl~~a~~e~----~~~~~~d-~~i~N--d~l~~a~~~l~~ii~~~~ 199 (219)
T 1s96_A 152 --QDSEEVIAKRMAQAVAEM----SHYAEYD-YLIVN--DDFDTALTDLKTIIRAER 199 (219)
T ss_dssp --CSCHHHHHHHHHHHHHHH----TTGGGSS-EEEEC--SSHHHHHHHHHHHHHHHH
T ss_pred --CCCHHHHHHHHHHHHHHH----hhccCCC-EEEEC--cCHHHHHHHHHHHHHHHH
Confidence 234678888887654332 2222223 33344 689999999999987553
No 121
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=98.08 E-value=1.5e-06 Score=77.99 Aligned_cols=37 Identities=24% Similarity=0.180 Sum_probs=33.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLV 98 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dll 98 (273)
.+..|+|+||+||||||++..|+++++..+|++|.+.
T Consensus 4 m~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~q 40 (323)
T 3crm_A 4 LPPAIFLMGPTAAGKTDLAMALADALPCELISVDSAL 40 (323)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchh
Confidence 3468999999999999999999999999999998763
No 122
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.08 E-value=1.6e-06 Score=77.81 Aligned_cols=38 Identities=21% Similarity=0.202 Sum_probs=31.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC-------CCeechhHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE-------VPHISMGSLV 98 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g-------~~~is~~dll 98 (273)
.++.+|.|+||+||||||+++.|+..++ +..++.|+..
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~ 134 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFL 134 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccc
Confidence 4678899999999999999999999875 4457776643
No 123
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.01 E-value=9.2e-06 Score=67.46 Aligned_cols=27 Identities=22% Similarity=0.143 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLE 88 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g 88 (273)
++..++|+||+||||||+.+.|...+.
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 356789999999999999999998763
No 124
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.87 E-value=5.1e-06 Score=74.98 Aligned_cols=34 Identities=21% Similarity=0.181 Sum_probs=32.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHH
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSL 97 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dl 97 (273)
..|+|+||+||||||+|..|++.++..+|++|++
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~ 41 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDSM 41 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccccc
Confidence 5899999999999999999999999999999876
No 125
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=97.86 E-value=9.9e-06 Score=69.74 Aligned_cols=40 Identities=15% Similarity=0.112 Sum_probs=36.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHcc
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELS 103 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~ 103 (273)
++|.|+|++||||||+++.|.+++|+++++.++.+++++.
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~g~~~~~~~~~~~~~~~ 41 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDALA 41 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeEEecChHHHHHHH
Confidence 6789999999999999999999999999999988876553
No 126
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.81 E-value=9.4e-06 Score=72.32 Aligned_cols=36 Identities=31% Similarity=0.272 Sum_probs=32.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSL 97 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dl 97 (273)
.+..|+|+||+||||||++..|+++++.++||.|.+
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 44 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILPVELISVDSA 44 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTT
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCCCcEEecccc
Confidence 467889999999999999999999999988887653
No 127
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=97.79 E-value=0.00016 Score=68.41 Aligned_cols=29 Identities=21% Similarity=0.163 Sum_probs=26.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCC
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEV 89 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g~ 89 (273)
..++.|+|.|..||||+|+.+.|.+.++=
T Consensus 41 ~~~vlIvfEG~D~AGKg~~Ik~l~~~l~p 69 (500)
T 3czp_A 41 RFPVIILINGIEGAGKGETVKLLNEWMDP 69 (500)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHSCG
T ss_pred CCCEEEEEeCcCCCCHHHHHHHHHHhcCc
Confidence 46899999999999999999999999953
No 128
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.79 E-value=1e-05 Score=72.28 Aligned_cols=35 Identities=26% Similarity=0.158 Sum_probs=31.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHH
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSL 97 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dl 97 (273)
++.|+|+||+||||||++..|+++++..+||+|.+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 56789999999999999999999999999988765
No 129
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=97.73 E-value=0.00025 Score=62.76 Aligned_cols=163 Identities=8% Similarity=0.056 Sum_probs=90.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCC-CeechhHHHHHHccCC----Ch-----HHHHHHHHHHCCCCCCHH-----
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEV-PHISMGSLVRQELSPR----SA-----LYKQIANAVNEGKLVPED----- 125 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g~-~~is~~dllr~~~~~~----~~-----~g~~i~~~l~~g~~~~~~----- 125 (273)
..+..|+|+|| ||+|+.+.|.+.+.- ..+++...-|. ..++ .. .-+++...+.+|..+...
T Consensus 103 ~~~r~ivl~GP---gK~tl~~~L~~~~~~~~~~~vs~TTR~-~R~gE~~G~dY~Fv~s~eef~~~i~~g~flE~~~~~g~ 178 (295)
T 1kjw_A 103 HYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRP-KREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSH 178 (295)
T ss_dssp CSCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSC-CCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETTE
T ss_pred CCCCEEEEECC---CHHHHHHHHHhhCccceeeeeeecccC-CCCccccCceeEecCCHHHHHHHHHCCCcEEEEEEcCc
Confidence 35567889998 799999999997641 11222111111 1111 00 234566667777654321
Q ss_pred ---HHHHHHHHHHHhcccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccC-HHHHHHHHhcCCcCCCcccccccCC
Q 024067 126 ---VIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSI-EDQLVKRNLESEAFSPHKEFLRLGG 201 (273)
Q Consensus 126 ---~~~~ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~-~e~l~~Rl~~R~~~~~~~~~y~~~~ 201 (273)
+-..-+.+.+.. ++.+|+|.-+....+... ....| ++|++..| .+++. ++.+|..
T Consensus 179 ~YGt~~~~V~~~~~~-----G~~vildid~~g~~~l~~--~~~~p-i~IfI~pps~~~L~-~L~~R~t------------ 237 (295)
T 1kjw_A 179 LYGTSVQSVREVAEQ-----GKHCILDVSANAVRRLQA--AHLHP-IAIFIRPRSLENVL-EINKRIT------------ 237 (295)
T ss_dssp EEEEEHHHHHHHHHT-----TCEEEECCCTTHHHHHHH--TTCCC-EEEEECCSSHHHHH-HHCTTSC------------
T ss_pred EeeeeHHHHHHHHhc-----CCeEEEEeCHHHHHHHHh--cccCC-eEEEEECCCHHHHH-HHHhcCC------------
Confidence 112333444444 478999987654443332 11344 78888876 55654 4665541
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhcCC
Q 024067 202 ARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQHM 262 (273)
Q Consensus 202 ~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~~~ 262 (273)
++.+++|+....... ..+....+ .+ |. +.+.++.+++|.++|.....
T Consensus 238 --------~~~i~~rl~~a~~~e---~~~~~~fd-~v-iv-Nd~le~a~~~l~~ii~~~~~ 284 (295)
T 1kjw_A 238 --------EEQARKAFDRATKLE---QEFTECFS-AI-VE-GDSFEEIYHKVKRVIEDLSG 284 (295)
T ss_dssp --------HHHHHHHHHHHHHHH---HHHGGGCS-EE-EC-CSSHHHHHHHHHHHHHHHSC
T ss_pred --------HHHHHHHHHHHHHHH---HhccccCe-EE-EE-CcCHHHHHHHHHHHHHhccC
Confidence 245777877663211 11222222 23 44 35899999999999976543
No 130
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=97.72 E-value=0.00016 Score=68.47 Aligned_cols=166 Identities=10% Similarity=0.035 Sum_probs=87.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC---CCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHh
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE---VPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEE 137 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g---~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~ 137 (273)
..++.|+|.|..||||+|+.++|.+.++ +.++.+. .|...+. +.. .+.....+
T Consensus 298 ~~~vlIvfEG~DaAGKg~~Ik~l~~~ldprg~~V~~~~----------~Pt~~E~------~~~--------yl~R~~~~ 353 (500)
T 3czp_A 298 QHSLVAVFEGNDAAGKGGAIRRVTDALDPRQYHIVPIA----------APTEEER------AQP--------YLWRFWRH 353 (500)
T ss_dssp GCEEEEEEEESTTSCHHHHHHHHHTTSCGGGCEEEECC----------SCCHHHH------TSC--------TTHHHHTT
T ss_pred CCCEEEEEeccCCCCHHHHHHHHHHhcCccCCeEEEeC----------CCChhhh------cch--------HHHHHHHh
Confidence 3689999999999999999999999984 3333321 0111111 111 11122222
Q ss_pred cccCCcceEEEeCCCCC------------HH-------HHHHHH----hhCCCceEEEEccCHHHHHHHHhcCCcCCCcc
Q 024067 138 GYYRGESGFILDGIPRT------------RI-------QAEILD----QIVDVDLVINFKSIEDQLVKRNLESEAFSPHK 194 (273)
Q Consensus 138 ~~~~~~~g~IlDg~P~~------------~~-------qa~~l~----~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~ 194 (273)
- ...+.-+|.|.+-.+ .. +...++ ..+.+++.|+|+++.++..+|+..|..++...
T Consensus 354 l-P~~G~i~IfDRswY~~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~Kf~L~is~eeQ~~R~~~R~~~p~k~ 432 (500)
T 3czp_A 354 I-PARRQFTIFDRSWYGRVLVERIEGFCAPADWLRAYGEINDFEEQLSEYGIIVVKFWLAIDKQTQMERFKEREKTPYKR 432 (500)
T ss_dssp C-CCTTCEEEEESCGGGGGTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEECCHHHHHHHHHHHHHSSCTT
T ss_pred C-CCCCeEEEEeCcchhhHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhCCCeEEEEEEECCHHHHHHHHHHHhcCCccc
Confidence 1 122444677754221 11 111221 12468899999999999999999887654211
Q ss_pred cccccCCCCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHh-cCcEEEEeCCC---ChhHHHHHHHHHHHhc
Q 024067 195 EFLRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSK-QRKLLNFQVAA---APGETWQGLLSALHLQ 260 (273)
Q Consensus 195 ~~y~~~~~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~-~~~~~~id~~~---s~~ev~~~I~~~l~~~ 260 (273)
+.. .+.|-. -.++...|.+........-.. ...|+.|+++. ..-.|.+.|.+.|...
T Consensus 433 --Wk~-----s~~D~~--~~~~w~~y~~a~~~~l~~T~t~~APW~vI~a~dk~~arl~v~~~i~~~l~~~ 493 (500)
T 3czp_A 433 --YKI-----TEEDWR--NRDKWDQYVDAVGDMVDRTSTEIAPWTLVEANDKRFARVKVLRTINDAIEAA 493 (500)
T ss_dssp --SCC-----CSSTTT--GGGGHHHHHHHHHHHHHHHCCSSSCEEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred --CCC-----CHHHHH--HHHhHHHHHHHHHHHHHHhccCCCCEEEEECCCccchHHHHHHHHHHHHHHH
Confidence 111 011111 012223333322222221111 12599999876 3456667777666543
No 131
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.69 E-value=8.9e-06 Score=73.77 Aligned_cols=51 Identities=18% Similarity=0.355 Sum_probs=39.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCe--------------------echhHHHHHHccCCChHHHHHHHHHHC
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPH--------------------ISMGSLVRQELSPRSALYKQIANAVNE 118 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~--------------------is~~dllr~~~~~~~~~g~~i~~~l~~ 118 (273)
....|+|+|+|||||||+++.|++.+++++ +++|+.+.+ ..|+.+.+++..
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~l~a~~~g~~~ir~~~~~a~d~D~~I~~------~~g~~i~~if~~ 93 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQIINEKYHTFLSEHPNVIEVNDRLKPMVNLVDSLKT------LQPNKVAEMIEN 93 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHHHHHHHHHSTTCCCEECTTSCCCCSSTTSEE------CCHHHHHHHHHT
T ss_pred CeeEEEEECCCCCcHHHHHHHHHHHhCCCeeeecccccchHHHHHHHHhhhhhhhHHHH------HhCccHHHHHHH
Confidence 345799999999999999999999999887 555555432 246677777764
No 132
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.69 E-value=2.5e-05 Score=68.82 Aligned_cols=33 Identities=15% Similarity=0.150 Sum_probs=28.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~ 94 (273)
.|..++|.||||+|||++|+.||+.+|.+++.+
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v 67 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMGINPIMM 67 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 456778899999999999999999998776543
No 133
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.60 E-value=0.00071 Score=54.45 Aligned_cols=107 Identities=19% Similarity=0.134 Sum_probs=59.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHH----HHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVI----FALLSKRLEE 137 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~----~~ll~~~l~~ 137 (273)
++-.++|+|++||||||+++.+. .+...++.+ .++..+.+.. |........ .......+..
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~--~~~~~~~~d-~~~g~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~ 72 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF--KPTEVISSD-FCRGLMSDDE------------NDQTVTGAAFDVLHYIVSKRLQL 72 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS--CGGGEEEHH-HHHHHHCSST------------TCGGGHHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHc--cCCeEEccH-HHHHHhcCcc------------cchhhHHHHHHHHHHHHHHHHhC
Confidence 57789999999999999999865 245556553 4443333211 111111111 1112222222
Q ss_pred cccCCcceEEEeCCCCCH---HHHHHHHh-hCCCceEEEEccCHHHHHHHHhcCC
Q 024067 138 GYYRGESGFILDGIPRTR---IQAEILDQ-IVDVDLVINFKSIEDQLVKRNLESE 188 (273)
Q Consensus 138 ~~~~~~~g~IlDg~P~~~---~qa~~l~~-~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (273)
+...++|...... .|.-.+.. +...-.+++||-|...+-.|...|.
T Consensus 73 -----g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~ 122 (171)
T 4gp7_A 73 -----GKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRT 122 (171)
T ss_dssp -----TCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCS
T ss_pred -----CCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhccc
Confidence 3456777654432 22222322 2222358889999999988887775
No 134
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=97.52 E-value=4.4e-05 Score=72.57 Aligned_cols=35 Identities=14% Similarity=0.059 Sum_probs=30.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCC-------CeechhH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEV-------PHISMGS 96 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~-------~~is~~d 96 (273)
.++.|+|+|++||||||+++.|+++++. .+++.|+
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 5688999999999999999999999986 5677655
No 135
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=97.50 E-value=4.1e-05 Score=70.52 Aligned_cols=34 Identities=24% Similarity=0.216 Sum_probs=30.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhH
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGS 96 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~d 96 (273)
.+.|+|+||+||||||++..|++.++..+||+|.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 3578899999999999999999999999998876
No 136
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.49 E-value=9.3e-05 Score=59.89 Aligned_cols=38 Identities=24% Similarity=0.271 Sum_probs=30.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh----C--CCeechhHHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL----E--VPHISMGSLVR 99 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~----g--~~~is~~dllr 99 (273)
.+..++|+||||+||||+++.++..+ | +.+++..+++.
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~ 80 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIF 80 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHH
Confidence 36788999999999999999999876 3 45666666554
No 137
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.47 E-value=7.6e-05 Score=63.97 Aligned_cols=31 Identities=23% Similarity=0.480 Sum_probs=26.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~ 94 (273)
.-++|+||||+||||+++.|+..++.+++.+
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~~~~~~~~i 76 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGEAKVPFFTI 76 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEEEE
T ss_pred CeEEEECcCCCCHHHHHHHHHHHcCCCEEEE
Confidence 3588999999999999999999998766543
No 138
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.45 E-value=8.6e-05 Score=63.38 Aligned_cols=32 Identities=28% Similarity=0.488 Sum_probs=27.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~ 94 (273)
+..++|.||||+|||++++.|++.++.+++.+
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~~ 70 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEAQVPFLAM 70 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence 45688999999999999999999999876643
No 139
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.45 E-value=6.9e-05 Score=69.77 Aligned_cols=32 Identities=16% Similarity=0.257 Sum_probs=28.3
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~ 94 (273)
+.-|+|.||||+|||++|+.+|.+++++++.+
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v 246 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQTNATFLKL 246 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCeeEEECcCCCCHHHHHHHHHHHhCCCEEEE
Confidence 55688999999999999999999999887654
No 140
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.44 E-value=8.3e-05 Score=66.00 Aligned_cols=37 Identities=27% Similarity=0.240 Sum_probs=31.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC-------CCeechhHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE-------VPHISMGSL 97 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g-------~~~is~~dl 97 (273)
.++.+|.|+|++||||||+++.|+..++ +.+|++|+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~ 121 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF 121 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence 4678999999999999999999999876 556666654
No 141
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.42 E-value=8e-05 Score=69.24 Aligned_cols=32 Identities=19% Similarity=0.303 Sum_probs=28.1
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~ 94 (273)
+.-|+|.||||+|||++|+.+|..++++++.+
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v 237 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANSTKAAFIRV 237 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Confidence 44588999999999999999999999887664
No 142
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.41 E-value=8.4e-05 Score=69.25 Aligned_cols=32 Identities=22% Similarity=0.279 Sum_probs=28.2
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~ 94 (273)
+.-|+|.||||+|||++|+.||..+|++++.+
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v 246 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAATIGANFIFS 246 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 45688999999999999999999999887654
No 143
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.40 E-value=0.00011 Score=65.35 Aligned_cols=33 Identities=21% Similarity=0.269 Sum_probs=28.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~ 94 (273)
.+..++|.||||+|||++|+.+++.++.+++.+
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v 82 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSV 82 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEE
Confidence 356799999999999999999999998776543
No 144
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.39 E-value=7.9e-05 Score=68.66 Aligned_cols=32 Identities=22% Similarity=0.342 Sum_probs=28.1
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~ 94 (273)
+.-|+|.||||+|||++|+.+|.+++++++++
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v 213 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHHTDCKFIRV 213 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCceEEeCCCCCCHHHHHHHHHHhhCCCceEE
Confidence 34588999999999999999999999887664
No 145
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.39 E-value=0.00011 Score=66.35 Aligned_cols=33 Identities=33% Similarity=0.537 Sum_probs=29.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~ 94 (273)
.+..|+|.||||+|||++|+.|++.++.+++.+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~ 82 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTMA 82 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEe
Confidence 345788999999999999999999999888765
No 146
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.37 E-value=9.3e-05 Score=69.09 Aligned_cols=33 Identities=33% Similarity=0.469 Sum_probs=29.6
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeechh
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMG 95 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~ 95 (273)
+..|+|+||||+||||+++.||+.++++++.++
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~ 82 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 82 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHcCCCceeec
Confidence 456999999999999999999999999887764
No 147
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.36 E-value=0.00011 Score=64.91 Aligned_cols=39 Identities=21% Similarity=0.264 Sum_probs=30.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeec--hhHHHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHIS--MGSLVRQ 100 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is--~~dllr~ 100 (273)
.+..|+|.||||+||||+++.|++.++.+++. ..+++..
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~ 88 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 88 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhh
Confidence 35578899999999999999999999876654 4455543
No 148
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.36 E-value=0.00011 Score=64.18 Aligned_cols=32 Identities=19% Similarity=0.304 Sum_probs=27.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeec
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHIS 93 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is 93 (273)
.+..++|.||||+||||+++.|++.++.+++.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~ 84 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECSATFLN 84 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTCEEEE
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEE
Confidence 35678999999999999999999999876654
No 149
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.35 E-value=0.0001 Score=65.05 Aligned_cols=39 Identities=13% Similarity=0.055 Sum_probs=31.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC-------CCee-chhHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE-------VPHI-SMGSLVR 99 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g-------~~~i-s~~dllr 99 (273)
.++.+|.|.|++||||||+++.|++.++ ...+ +.|+++.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~ 75 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYL 75 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccC
Confidence 4678999999999999999999999885 3445 7777653
No 150
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.35 E-value=0.00012 Score=63.83 Aligned_cols=29 Identities=28% Similarity=0.407 Sum_probs=25.4
Q ss_pred EEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067 66 WVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (273)
Q Consensus 66 Ivi~G~pGSGKsT~a~~La~~~g~~~is~ 94 (273)
++|+||||+||||+++.|+..++...+.+
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~~~i~i 75 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGLNFISV 75 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTCEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHcCCCEEEE
Confidence 89999999999999999999998655543
No 151
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.34 E-value=0.00012 Score=63.45 Aligned_cols=32 Identities=22% Similarity=0.320 Sum_probs=27.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~ 94 (273)
+..++|.||||+||||+++.|++.++.+++.+
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v 82 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATETNATFIRV 82 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHHTTCEEEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 45688999999999999999999998876543
No 152
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.34 E-value=0.00016 Score=62.46 Aligned_cols=33 Identities=24% Similarity=0.305 Sum_probs=29.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~ 94 (273)
.+..++|.||||+|||++|+.+++.++.+++.+
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i 95 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKI 95 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 456789999999999999999999999887654
No 153
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=97.34 E-value=0.00011 Score=61.32 Aligned_cols=34 Identities=26% Similarity=0.233 Sum_probs=29.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGS 96 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~d 96 (273)
.+..|+|+||+||||||+|..|+++.+ ..|+.|.
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs 66 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRGH-RLIADDR 66 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecch
Confidence 367799999999999999999999877 8887654
No 154
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.29 E-value=0.00017 Score=64.45 Aligned_cols=30 Identities=20% Similarity=0.239 Sum_probs=25.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh-CCCee
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLL-EVPHI 92 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~-g~~~i 92 (273)
+.-|+|.||||+|||++|+.+++.+ +.+++
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~ 75 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEANNSTFF 75 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTTSCEEE
T ss_pred CceEEEECCCCccHHHHHHHHHHHcCCCcEE
Confidence 4678899999999999999999998 65554
No 155
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.28 E-value=0.00012 Score=68.41 Aligned_cols=32 Identities=22% Similarity=0.339 Sum_probs=28.3
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~ 94 (273)
+.-|+|.||||+|||++|+.||.+++++++.+
T Consensus 243 prGILLyGPPGTGKTlLAkAiA~e~~~~fi~v 274 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCARAVANRTDATFIRV 274 (467)
T ss_dssp CSEEEECSCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCceEeeCCCCCcHHHHHHHHHhccCCCeEEE
Confidence 55688999999999999999999999887654
No 156
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.26 E-value=0.00016 Score=67.10 Aligned_cols=32 Identities=19% Similarity=0.339 Sum_probs=28.2
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~ 94 (273)
+.-|+|.||||+|||++|+.||.+++++++.+
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v 247 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQTSATFLRI 247 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCceECCCCchHHHHHHHHHHHhCCCEEEE
Confidence 45688999999999999999999999887654
No 157
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Probab=97.25 E-value=0.0039 Score=54.58 Aligned_cols=170 Identities=9% Similarity=-0.019 Sum_probs=91.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhccc
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYY 140 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~ 140 (273)
..++.|+|.|..||||+++.++|.+.++=..+.+- .+.. +..++ .+.. .+......- -
T Consensus 73 ~~~vlIvfEG~DaAGKgg~Ik~l~~~ldPRg~~V~-----a~~~--Pt~eE------~~~~--------ylwR~~~~l-P 130 (289)
T 3rhf_A 73 PKRLLLILQAMDTAGKGGIVSHVVGAMDPQGVQLT-----AFKA--PTDEE------KSHD--------FLWRIEKQV-P 130 (289)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEE-----ECCS--CCHHH------HTSC--------TTHHHHTTC-C
T ss_pred CCcEEEEEECCCCCChHHHHHHHHHhcCcCceEEE-----ECCC--CChhh------hcCC--------HHHHHHHhC-C
Confidence 36899999999999999999999999954333221 0000 00000 0000 011111110 0
Q ss_pred CCcceEEEeCCCCC-------------------HHHHHHHHhh----CCCceEEEEccCHHHHHHHHhcCCcCCCccccc
Q 024067 141 RGESGFILDGIPRT-------------------RIQAEILDQI----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFL 197 (273)
Q Consensus 141 ~~~~g~IlDg~P~~-------------------~~qa~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y 197 (273)
..+.-.|+|+.-.+ ..+...++.. +..-+-++|+++.++..+|+..|..++... +
T Consensus 131 ~~G~I~IFdRSwY~~vlverV~g~~~~~~~~~~~~~I~~FE~~L~~~G~~ilKf~LhIskeEQ~kR~~~R~~dP~k~--W 208 (289)
T 3rhf_A 131 AAGMVGVFDRSQYEDVLIHRVHGWADAAELERRYAAINDFESRLTEQGTTIVKVMLNISKDEQKKRLIARLDDPSKH--W 208 (289)
T ss_dssp CTTCEEEEESCGGGGGTHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECCHHHHHHHHHHHHHCGGGG--G
T ss_pred CCCeEEEEeCchhhhHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEECCHHHHHHHHHHHhcCCccc--c
Confidence 12333455532111 1122223221 234467999999999999999887654211 1
Q ss_pred ccCCCCCCCCCcHHHHHHH--HHHHHHhhHHHHHHHHhc----CcEEEEeCCCCh---hHHHHHHHHHHHhcCCCCCC
Q 024067 198 RLGGARFSAADAASAWKEK--FRIYAEQGKSLEDYYSKQ----RKLLNFQVAAAP---GETWQGLLSALHLQHMNAVS 266 (273)
Q Consensus 198 ~~~~~~~~~~d~~e~~~~r--l~~y~~~~~~l~~~y~~~----~~~~~id~~~s~---~ev~~~I~~~l~~~~~~~~~ 266 (273)
.-++..++++ ...|.+.. .+.+... .-|+.|+++.-- -.|.+.|++.|...++.-+.
T Consensus 209 ---------K~s~~D~~~r~~wd~Y~~a~---e~ml~~T~t~~APW~VV~addK~~arl~v~~~ll~~Le~~~~~~P~ 274 (289)
T 3rhf_A 209 ---------KYSRGDLAERAYWDDYMDAY---SVAFEKTSTEIAPWHVVPANKKWYARIAVQQLLLDALGGLQLDWPK 274 (289)
T ss_dssp ---------GCCHHHHHHHTTHHHHHHHH---HHHHHHHCCSSSCEEEEECSSHHHHHHHHHHHHHHHHHTTCCCCCC
T ss_pred ---------cCCHHHHHHHHHHHHHHHHH---HHHHHHhCCCCCCeEEEeCCCHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 1123334433 44554443 3344432 359999987643 23778888888877664443
No 158
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.24 E-value=0.00017 Score=62.86 Aligned_cols=31 Identities=35% Similarity=0.490 Sum_probs=27.1
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeec
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHIS 93 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is 93 (273)
+..++|.||||+|||++++.|++.++.+++.
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~~~~~~ 80 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIK 80 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 4568899999999999999999999876654
No 159
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=97.24 E-value=0.0031 Score=62.35 Aligned_cols=165 Identities=8% Similarity=0.032 Sum_probs=89.4
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhCC-CeechhHHHHHHccCC----Ch-----HHHHHHHHHHCCCCCCHH----
Q 024067 60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEV-PHISMGSLVRQELSPR----SA-----LYKQIANAVNEGKLVPED---- 125 (273)
Q Consensus 60 ~~~~~~Ivi~G~pGSGKsT~a~~La~~~g~-~~is~~dllr~~~~~~----~~-----~g~~i~~~l~~g~~~~~~---- 125 (273)
+..+..|+|+|| ||+|+.++|.+.+.- ..+++...-|. ..++ .. .-+++...+.+|..+...
T Consensus 528 ~~~~r~vvl~GP---~K~tl~~~L~~~~~~~~~~~vs~TTR~-~r~gE~~G~dY~Fv~s~~~f~~~i~~~~flE~~~~~g 603 (721)
T 2xkx_A 528 VHYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRP-KREYEIDGRDYHFVSSREKMEKDIRAHKFIEAGQYNS 603 (721)
T ss_pred CCCCCEEEEECC---CHHHHHHHHHHhCccceeecccccccC-CCCCccCCceeEEecCHHHHHHHHhcCCceEEEEECC
Confidence 345677889998 499999999998731 12222222221 1111 00 134556666666654321
Q ss_pred ----HHHHHHHHHHHhcccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCC
Q 024067 126 ----VIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGG 201 (273)
Q Consensus 126 ----~~~~ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~ 201 (273)
+-..-+.+.+.+ ++.+|||.-+....+.... ...| ++||+..+.-..++++.+|..
T Consensus 604 ~~YGt~~~~v~~~~~~-----g~~~ildi~~~~~~~l~~~--~~~p-~~ifi~pps~~~L~~l~~R~t------------ 663 (721)
T 2xkx_A 604 HLYGTSVQSVREVAEQ-----GKHCILDVSANAVRRLQAA--HLHP-IAIFIRPRSLENVLEINKRIT------------ 663 (721)
T ss_pred ccceeeHHHHHHHHHC-----CCcEEEeCCHHHHHHHHhc--ccCC-EEEEEeCCcHHHHHHHhccCC------------
Confidence 223334455544 4779999754332222211 1234 788888765444455666542
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhcCC
Q 024067 202 ARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQHM 262 (273)
Q Consensus 202 ~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~~~ 262 (273)
++.+++|+....+... .|....+ .+ |+ +.+.++.+++|.++|.....
T Consensus 664 --------~~~~~~rl~~a~~~e~---~~~~~fd-~v-i~-Nd~l~~a~~~l~~~i~~~~~ 710 (721)
T 2xkx_A 664 --------EEQARKAFDRATKLEQ---EFTECFS-AI-VE-GDSFEEIYHKVKRVIEDLSG 710 (721)
T ss_pred --------HHHHHHHHHHHHHHHH---hccccCc-EE-EE-CcCHHHHHHHHHHHHHhccC
Confidence 2356777776532111 1111112 23 44 35899999999999986544
No 160
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.24 E-value=0.0002 Score=62.81 Aligned_cols=26 Identities=27% Similarity=0.438 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.+..++|.||||+|||++++.+++.+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 45679999999999999999999988
No 161
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.21 E-value=0.00018 Score=58.81 Aligned_cols=27 Identities=22% Similarity=0.471 Sum_probs=24.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCC
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLLEVP 90 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~ 90 (273)
++++|+||+||||||+.+.|+..+++.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l~i~ 27 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERLGKR 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 468899999999999999999998743
No 162
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.21 E-value=0.0002 Score=65.02 Aligned_cols=32 Identities=31% Similarity=0.449 Sum_probs=28.1
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~ 94 (273)
+..|+|.||||+||||+|+.|++.++.+++.+
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~ 103 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAIS 103 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence 45688999999999999999999998877654
No 163
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.20 E-value=0.00024 Score=56.74 Aligned_cols=26 Identities=35% Similarity=0.540 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.+..++|.|+||+||||+++.+++.+
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 34568899999999999999999986
No 164
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.18 E-value=0.0002 Score=64.81 Aligned_cols=32 Identities=22% Similarity=0.287 Sum_probs=27.6
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~ 94 (273)
+..|+|.||||+|||++|+.|++.++.+++.+
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~v 115 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEANSTFFSV 115 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHHTCEEEEE
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCEEEe
Confidence 44588999999999999999999999876543
No 165
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.15 E-value=0.00024 Score=60.64 Aligned_cols=29 Identities=34% Similarity=0.521 Sum_probs=25.4
Q ss_pred EEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067 66 WVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (273)
Q Consensus 66 Ivi~G~pGSGKsT~a~~La~~~g~~~is~ 94 (273)
++|+||||+||||+++.|+..++...+.+
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~~~~i~~ 80 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEARVPFITA 80 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence 88999999999999999999987665543
No 166
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.14 E-value=0.00021 Score=57.06 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
+..++|.|+||+||||+++.+++.+
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 4567899999999999999999987
No 167
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.14 E-value=0.00012 Score=62.94 Aligned_cols=29 Identities=34% Similarity=0.566 Sum_probs=25.8
Q ss_pred EEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067 66 WVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (273)
Q Consensus 66 Ivi~G~pGSGKsT~a~~La~~~g~~~is~ 94 (273)
++|.||||+|||++++.|++.++.+++.+
T Consensus 47 vll~G~~GtGKT~la~~la~~~~~~~~~v 75 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEAHVPFFSM 75 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHHTCCCCCC
T ss_pred EEEECCCCCcHHHHHHHHHHHhCCCEEEe
Confidence 77999999999999999999998776654
No 168
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=97.12 E-value=0.0012 Score=58.22 Aligned_cols=164 Identities=12% Similarity=0.048 Sum_probs=87.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCe-echhHHHHHHccCCC---------hHHHHHHHHHHCCCCCCHH-----
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPH-ISMGSLVRQELSPRS---------ALYKQIANAVNEGKLVPED----- 125 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~-is~~dllr~~~~~~~---------~~g~~i~~~l~~g~~~~~~----- 125 (273)
.++.-|||+|| ||+|+.++|.+++.-.+ .++..--|. ..++. ..-+.+...+.+|..+...
T Consensus 98 ~~~RpvVl~Gp---~K~tl~~~Ll~~~p~~f~~sVs~TTR~-pR~gE~dG~dY~Fv~s~e~fe~~i~~~~flE~a~~~gn 173 (292)
T 3tvt_A 98 NYTRPVIILGP---LKDRINDDLISEYPDKFGSCVPHTTRP-KREYEVDGRDYHFVSSREQMERDIQNHLFIEAGQYNDN 173 (292)
T ss_dssp SSCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSC-CCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETTE
T ss_pred CCCCeEEEeCC---CHHHHHHHHHHhChhhccccccCCccC-CcCCccCCccccccCCHHHHHHHHhcCceEEEEEEccc
Confidence 45566888888 59999999999885322 222111111 11110 0124456666666544321
Q ss_pred ---HHHHHHHHHHHhcccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccC-HHHHHHHHhcCCcCCCcccccccCC
Q 024067 126 ---VIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSI-EDQLVKRNLESEAFSPHKEFLRLGG 201 (273)
Q Consensus 126 ---~~~~ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~-~e~l~~Rl~~R~~~~~~~~~y~~~~ 201 (273)
+...-+.+.+.. ++.+|||--+....|.. .....-++||+..| .+++.+|+.+|.
T Consensus 174 ~YGT~~~~V~~~~~~-----gk~viLdid~qg~~~lk---~~~~~pi~IFI~PpS~e~L~~r~~~r~------------- 232 (292)
T 3tvt_A 174 LYGTSVASVREVAEK-----GKHCILDVSGNAIKRLQ---VAQLYPVAVFIKPKSVDSVMEMNRRMT------------- 232 (292)
T ss_dssp EEEEEHHHHHHHHHH-----TCEEEECCCTHHHHHHH---HTTCCCEEEEECCSCHHHHHHTCTTSC-------------
T ss_pred eeEEehHHHHHHHHc-----CCcEEEeccchhhhhcc---cccccceEEEEECCCHHHHHHHHhCCC-------------
Confidence 112344455554 47799997764444432 22222267777765 566665554432
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhcCCC
Q 024067 202 ARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQHMN 263 (273)
Q Consensus 202 ~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~~~~ 263 (273)
+++.+.+.+|+...+. .|...-..+ |. +.+.++.+++|.++|......
T Consensus 233 -----~e~~~~~~~r~~k~e~-------e~~~~fD~v-Iv-Nddle~a~~~l~~iI~~e~~~ 280 (292)
T 3tvt_A 233 -----EEQAKKTYERAIKMEQ-------EFGEYFTGV-VQ-GDTIEEIYSKVKSMIWSQSGP 280 (292)
T ss_dssp -----TTHHHHHHHHHHHHHH-------HHTTTCSEE-EC-CSSHHHHHHHHHHHHHHHTCS
T ss_pred -----chhHHHHHHHHHHHHH-------hhhhhCCEE-EE-CcCHHHHHHHHHHHHHHhhCC
Confidence 2334444444433221 122211123 33 468999999999999877654
No 169
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.07 E-value=0.00036 Score=62.43 Aligned_cols=29 Identities=24% Similarity=0.275 Sum_probs=25.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCe
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPH 91 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~ 91 (273)
+..++|+||||+||||+++.|+..++..+
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~ 79 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASELQTNI 79 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHHHTCCE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 35688999999999999999999997754
No 170
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.07 E-value=0.00029 Score=63.72 Aligned_cols=32 Identities=19% Similarity=0.260 Sum_probs=27.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeec
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHIS 93 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is 93 (273)
.+..|+|.||||+|||++++.|++.++.+++.
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~ 147 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQSGATFFS 147 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCeEEE
Confidence 35678999999999999999999999877654
No 171
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.07 E-value=0.00044 Score=56.77 Aligned_cols=36 Identities=25% Similarity=0.237 Sum_probs=28.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHh---CC--CeechhHHHH
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLL---EV--PHISMGSLVR 99 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~---g~--~~is~~dllr 99 (273)
..++|.|+||+||||+++.|+..+ +. .+++..+++.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~ 95 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFR 95 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHH
Confidence 678899999999999999999977 33 3456655543
No 172
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.06 E-value=0.00028 Score=55.88 Aligned_cols=26 Identities=15% Similarity=0.132 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.+..++|+|++|+||||+++.++..+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 45678899999999999999999987
No 173
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.02 E-value=0.00041 Score=61.63 Aligned_cols=32 Identities=16% Similarity=0.119 Sum_probs=28.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~ 94 (273)
+..|+|.|+||+|||++++.+++.++.+++.+
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~ 86 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYEMSANIKTT 86 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhCCCeEEe
Confidence 34589999999999999999999999887654
No 174
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.02 E-value=0.00038 Score=65.04 Aligned_cols=32 Identities=34% Similarity=0.493 Sum_probs=27.6
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhC--CCeech
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLE--VPHISM 94 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g--~~~is~ 94 (273)
+..++|.||||+|||++|+.||+.++ ++++.+
T Consensus 63 ~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~ 96 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAIAQELGSKVPFCPM 96 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEE
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEE
Confidence 45688999999999999999999998 666554
No 175
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.00 E-value=0.0004 Score=60.29 Aligned_cols=29 Identities=34% Similarity=0.521 Sum_probs=25.5
Q ss_pred EEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067 66 WVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (273)
Q Consensus 66 Ivi~G~pGSGKsT~a~~La~~~g~~~is~ 94 (273)
++|+||||+||||+++.|+..++...+.+
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~~~~i~~ 104 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEARVPFITA 104 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred EEEECCCcChHHHHHHHHHHHcCCCEEEe
Confidence 88999999999999999999987665544
No 176
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.99 E-value=0.00044 Score=57.66 Aligned_cols=36 Identities=11% Similarity=-0.062 Sum_probs=28.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC-----CCeechhHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSL 97 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g-----~~~is~~dl 97 (273)
.+..++|.||||+||||+++.+++.++ +.+++..++
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~ 91 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH 91 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 456789999999999999999999874 345555443
No 177
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.98 E-value=0.0036 Score=58.30 Aligned_cols=26 Identities=15% Similarity=0.318 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
+|..|+++|++||||||++..||..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999876
No 178
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.93 E-value=0.00059 Score=62.41 Aligned_cols=32 Identities=19% Similarity=0.248 Sum_probs=28.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeec
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHIS 93 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is 93 (273)
.+..|+|.|||||||||+++.|+..++..++.
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~ 199 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLELCGGKALN 199 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence 56789999999999999999999998776655
No 179
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.93 E-value=0.00053 Score=62.56 Aligned_cols=32 Identities=19% Similarity=0.319 Sum_probs=28.2
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~ 94 (273)
+..|+|.||||+|||++++.|++.++.+++.+
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~~~~~~~v 179 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAESNATFFNI 179 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTTCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcCcEEEe
Confidence 56799999999999999999999998876643
No 180
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.92 E-value=0.00051 Score=53.75 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
+..|+|.|+||+|||++|+.|++..
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhC
Confidence 3458899999999999999999875
No 181
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.92 E-value=0.00054 Score=64.53 Aligned_cols=30 Identities=27% Similarity=0.495 Sum_probs=26.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (273)
Q Consensus 65 ~Ivi~G~pGSGKsT~a~~La~~~g~~~is~ 94 (273)
-|+|+||||+||||+++.|+...+.+++.+
T Consensus 51 gvLL~GppGtGKT~Laraia~~~~~~f~~i 80 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGEANVPFFHI 80 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCeeeC
Confidence 388999999999999999999999887654
No 182
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.92 E-value=0.00046 Score=57.95 Aligned_cols=26 Identities=23% Similarity=0.236 Sum_probs=23.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
++..++|+||+||||||+.+.|+..+
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 56789999999999999999999977
No 183
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.89 E-value=0.00048 Score=64.21 Aligned_cols=37 Identities=27% Similarity=0.302 Sum_probs=27.3
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh-CCCe--echhHHHH
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLL-EVPH--ISMGSLVR 99 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~-g~~~--is~~dllr 99 (273)
+.-|+|.||||+|||++|+.|++.+ +.++ ++..+++.
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~ 206 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS 206 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC----
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHh
Confidence 4578899999999999999999998 6554 44445543
No 184
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.88 E-value=0.0006 Score=56.50 Aligned_cols=28 Identities=25% Similarity=0.211 Sum_probs=24.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE 88 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g 88 (273)
.++..++|+||+||||||+.+.|+..+.
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4577899999999999999999998874
No 185
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.86 E-value=0.00062 Score=64.64 Aligned_cols=32 Identities=22% Similarity=0.203 Sum_probs=28.2
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~ 94 (273)
+..++|.||||+||||+++.|++.+|++++.+
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l~~~~i~i 108 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQELGYDILEQ 108 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 46789999999999999999999999877643
No 186
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.84 E-value=0.00059 Score=57.19 Aligned_cols=31 Identities=16% Similarity=0.188 Sum_probs=25.7
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeec
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHIS 93 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is 93 (273)
...++|.||||+||||+|..|++.++-..++
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l~g~i~~ 88 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFIQGAVIS 88 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHHTCEECC
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence 3468999999999999999999998654443
No 187
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.84 E-value=0.00051 Score=68.59 Aligned_cols=32 Identities=19% Similarity=0.209 Sum_probs=28.4
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~ 94 (273)
|.-|+|.||||+|||++|+.+|+++|++++.+
T Consensus 238 p~GILL~GPPGTGKT~LAraiA~elg~~~~~v 269 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIARAVANETGAFFFLI 269 (806)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHTTTTCEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCeEEEE
Confidence 56689999999999999999999999877654
No 188
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.84 E-value=0.00075 Score=60.06 Aligned_cols=27 Identities=26% Similarity=0.132 Sum_probs=24.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.++..|.|+|++||||||+++.|+..+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 468899999999999999999999976
No 189
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.78 E-value=0.00085 Score=54.42 Aligned_cols=26 Identities=12% Similarity=0.139 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
++..|.|.|++||||||++..|+..+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence 45678899999999999999999876
No 190
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.78 E-value=0.00056 Score=56.07 Aligned_cols=28 Identities=18% Similarity=0.075 Sum_probs=23.5
Q ss_pred EEEEcCCCCChhHHHHHHHHHhCCC--eech
Q 024067 66 WVLIGDPGVKKHVYADNLSKLLEVP--HISM 94 (273)
Q Consensus 66 Ivi~G~pGSGKsT~a~~La~~~g~~--~is~ 94 (273)
|+|+|++||||||+|..|++. +.+ ||.+
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT 31 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIAT 31 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEEC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEec
Confidence 789999999999999999987 654 4444
No 191
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.76 E-value=0.00088 Score=59.28 Aligned_cols=37 Identities=11% Similarity=-0.046 Sum_probs=29.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh---CC--CeechhHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL---EV--PHISMGSLV 98 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~---g~--~~is~~dll 98 (273)
.+..++|.||||+||||+++.+++.+ +. .+++..++.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~ 77 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFA 77 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHH
Confidence 34568899999999999999999987 54 456665554
No 192
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.76 E-value=0.00097 Score=58.28 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHh
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
..++|.||||+||||+++.|++.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHH
Confidence 368899999999999999999987
No 193
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.75 E-value=0.0011 Score=62.86 Aligned_cols=29 Identities=34% Similarity=0.521 Sum_probs=25.8
Q ss_pred EEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067 66 WVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (273)
Q Consensus 66 Ivi~G~pGSGKsT~a~~La~~~g~~~is~ 94 (273)
++|+||||+||||+++.|+...+.+++.+
T Consensus 67 vLL~GppGtGKTtLaraIa~~~~~~~i~i 95 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGEARVPFITA 95 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHHTTCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 89999999999999999999998766543
No 194
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.70 E-value=0.00099 Score=55.01 Aligned_cols=26 Identities=31% Similarity=0.355 Sum_probs=23.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCC
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLLEV 89 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~g~ 89 (273)
..++|.|+||+||||+++.+++.++.
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 47889999999999999999998854
No 195
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.70 E-value=0.00094 Score=58.73 Aligned_cols=30 Identities=27% Similarity=0.317 Sum_probs=26.3
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCee
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHI 92 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~i 92 (273)
+..++|.|+||+||||+++.+++.++.+++
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~~~~~~ 67 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHELGVNLR 67 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHHTCCEE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 346889999999999999999999987764
No 196
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.69 E-value=0.00091 Score=54.62 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh
Q 024067 65 QWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 65 ~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.++|.|+||+||||+++.+++.+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 38999999999999999999976
No 197
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.67 E-value=0.00097 Score=59.79 Aligned_cols=27 Identities=26% Similarity=0.420 Sum_probs=24.7
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCC
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEV 89 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~ 89 (273)
+..++|.||||+|||++++.+++.++.
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 468999999999999999999999974
No 198
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.67 E-value=0.0011 Score=61.94 Aligned_cols=31 Identities=19% Similarity=0.330 Sum_probs=27.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~ 94 (273)
..++|.||||+||||+++.|++.++.+++.+
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l 81 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYANADVERI 81 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhCCCeEEE
Confidence 5688999999999999999999998876654
No 199
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.67 E-value=0.001 Score=63.66 Aligned_cols=32 Identities=31% Similarity=0.466 Sum_probs=27.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeec
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHIS 93 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is 93 (273)
++..++|+||||+||||+++.|+..++.+++.
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~ 138 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVR 138 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEE
Confidence 46689999999999999999999999766543
No 200
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.66 E-value=0.00035 Score=54.57 Aligned_cols=25 Identities=20% Similarity=0.116 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhC
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLLE 88 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~g 88 (273)
..|+|.|+||+|||++|+.|++..+
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred CcEEEECCCCccHHHHHHHHHHhCC
Confidence 3588999999999999999998776
No 201
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}
Probab=96.64 E-value=0.008 Score=53.28 Aligned_cols=146 Identities=12% Similarity=0.091 Sum_probs=76.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccC
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~ 141 (273)
.+.-|||+|| ||+|+.++|.+.+.-.+-..-. +. .. +.+|+.++.+.+..+ +.+
T Consensus 144 ~~RPvVl~GP---~k~~l~~~L~~~~P~~F~~~v~-~~----------r~----i~~~~fis~~~V~~v----l~~---- 197 (308)
T 3kfv_A 144 FKRPVVILGP---VADIAMQKLTAEMPDQFEIAET-VS----------RT----DSPSKIIKLDTVRVI----AEK---- 197 (308)
T ss_dssp SCCCEEEEST---THHHHHHHHHHHCTTTEEECCC-C----------------------CCCHHHHHHH----HHT----
T ss_pred CCCeEEEeCc---cHHHHHHHHHHhCccccccccc-cc----------cc----ccCCCeecHHHHHHH----HHC----
Confidence 3444788999 7999999999987433211100 00 01 345666655444444 443
Q ss_pred CcceEEEeCCCCCHHHHHHHHhhCCCceEEEEcc-CHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHHHH
Q 024067 142 GESGFILDGIPRTRIQAEILDQIVDVDLVINFKS-IEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIY 220 (273)
Q Consensus 142 ~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~-~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~y 220 (273)
++.+|||--+....|... ....| ++||+.. +.++|.+| .+|.. .++++.+++++...
T Consensus 198 -Gk~~ILDId~QGa~~lk~--~~~~p-i~IFI~PPS~eeL~~r-r~R~~-----------------~esee~~~r~~~aa 255 (308)
T 3kfv_A 198 -DKHALLDVTPSAIERLNY--VQYYP-IVVFFIPESRPALKAL-RQWLA-----------------PASRRSTRRLYAQA 255 (308)
T ss_dssp -TCEEEECCCHHHHHHHHH--TTCCC-EEEEEEESCHHHHHHH-HHHHS-----------------TTCCCCHHHHHHHH
T ss_pred -CCcEEEEECHHHHHHHHh--cCCCC-EEEEEeCCCHHHHHHH-HhcCC-----------------CCCHHHHHHHHHHH
Confidence 588999977644444332 12345 5666665 45666654 44432 01122445554443
Q ss_pred HHhhHHHHHHH-HhcCcEEEEeCCCChhHHHHHHHHHHHhcC
Q 024067 221 AEQGKSLEDYY-SKQRKLLNFQVAAAPGETWQGLLSALHLQH 261 (273)
Q Consensus 221 ~~~~~~l~~~y-~~~~~~~~id~~~s~~ev~~~I~~~l~~~~ 261 (273)
.+ ++..| ...+.++.+| .+.++.+++|.++|....
T Consensus 256 ~e----iE~~~~~~FD~vI~VN--Ddle~A~~~L~~iI~~~~ 291 (308)
T 3kfv_A 256 QK----LRKHSSHLFTATIPLN--GTSDTWYQELKAIIREQQ 291 (308)
T ss_dssp HH----HHHHHGGGCSEEEEEC--SSSTHHHHHHHHHHHHHT
T ss_pred HH----HHHhhhccCcEEEEcC--CCHHHHHHHHHHHHHHhc
Confidence 22 22223 2234333244 667889999999887654
No 202
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.63 E-value=0.00063 Score=60.77 Aligned_cols=27 Identities=7% Similarity=0.124 Sum_probs=24.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.++..++|.||||+|||++++.+++++
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 357789999999999999999999988
No 203
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.63 E-value=0.00075 Score=59.88 Aligned_cols=29 Identities=24% Similarity=0.408 Sum_probs=25.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCee
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHI 92 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~i 92 (273)
..++|.||||+|||++++.|++.++.+++
T Consensus 47 ~~vll~G~pGtGKT~la~~la~~~~~~~~ 75 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVNTLAKTMDLDFH 75 (331)
T ss_dssp CCEEEESCCCHHHHHHHHHHHHHTTCCEE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCeE
Confidence 36889999999999999999999987654
No 204
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.63 E-value=0.0012 Score=54.01 Aligned_cols=25 Identities=16% Similarity=0.052 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
+..++++|+|||||||++.+++..+
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHH
Confidence 5678899999999999998887765
No 205
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.62 E-value=0.0015 Score=52.41 Aligned_cols=27 Identities=26% Similarity=0.369 Sum_probs=23.3
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 60 PRRGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 60 ~~~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
+-+..+|+|+|++|+||||+..+|...
T Consensus 4 ~~~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 4 HMKSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 335679999999999999999999863
No 206
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.60 E-value=0.0019 Score=52.01 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=24.0
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 60 PRRGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 60 ~~~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
..+..+|+|+|.+|+||||+..+|...
T Consensus 4 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 4 KKSSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp CCSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhC
Confidence 456789999999999999999999875
No 207
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.59 E-value=0.0012 Score=55.69 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLS 84 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La 84 (273)
++-.++|+||+||||||+++.|+
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHH
Confidence 67789999999999999999998
No 208
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.58 E-value=0.0012 Score=54.75 Aligned_cols=26 Identities=19% Similarity=0.221 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
++-.+.|+||+||||||+++.|+..+
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 67889999999999999999999754
No 209
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.57 E-value=0.0013 Score=59.08 Aligned_cols=26 Identities=12% Similarity=0.147 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.+..++|.||||+||||+++.+++.+
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 34588999999999999999999987
No 210
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.56 E-value=0.0017 Score=60.87 Aligned_cols=25 Identities=40% Similarity=0.603 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
...++|+|+||+|||++++.|++.+
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHH
Confidence 4467899999999999999999997
No 211
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.56 E-value=0.00089 Score=59.95 Aligned_cols=26 Identities=23% Similarity=0.203 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.+..++|.||||+||||+++.+++.+
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 45678899999999999999999987
No 212
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.56 E-value=0.0015 Score=54.21 Aligned_cols=26 Identities=23% Similarity=0.417 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
++..++|+|+|||||||+++.|+..+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 56788999999999999999999654
No 213
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.56 E-value=0.0013 Score=62.18 Aligned_cols=32 Identities=19% Similarity=0.209 Sum_probs=27.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~ 94 (273)
+.-++|.||||+|||++++.|++.++.+++.+
T Consensus 238 ~~~vLL~GppGtGKT~lAraia~~~~~~fv~v 269 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIARAVANETGAFFFLI 269 (489)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHCSSEEEEE
T ss_pred CCcEEEECcCCCCHHHHHHHHHHHhCCCEEEE
Confidence 45688999999999999999999998766543
No 214
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.52 E-value=0.0015 Score=53.95 Aligned_cols=33 Identities=21% Similarity=0.097 Sum_probs=26.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC--CCeech
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLE--VPHISM 94 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g--~~~is~ 94 (273)
++..++|.|+|||||||++..|+...+ +.+++.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~ 53 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDT 53 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEES
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEEC
Confidence 577899999999999999999987433 344544
No 215
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.52 E-value=0.0017 Score=52.76 Aligned_cols=26 Identities=15% Similarity=-0.002 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
+...++|+|++||||||++..|...+
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 35678899999999999999999875
No 216
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.51 E-value=0.0014 Score=53.98 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHh
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.++.|+|++||||||+.+.|+..+
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 468899999999999999999887
No 217
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.51 E-value=0.002 Score=51.49 Aligned_cols=26 Identities=19% Similarity=0.278 Sum_probs=24.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.+-.+.|+||.||||||+.+.|+..+
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 56789999999999999999999987
No 218
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.48 E-value=0.0017 Score=57.65 Aligned_cols=27 Identities=22% Similarity=0.389 Sum_probs=24.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLE 88 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g 88 (273)
++-.+.|+||+||||||+++.|+..+.
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~~ 151 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFLG 151 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhcC
Confidence 577899999999999999999999873
No 219
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.48 E-value=0.0018 Score=57.41 Aligned_cols=27 Identities=19% Similarity=0.310 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.++..|+|+|++||||||++..||..+
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 356789999999999999999999877
No 220
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.48 E-value=0.0016 Score=58.25 Aligned_cols=26 Identities=15% Similarity=0.121 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.+..++|.|+||+||||+++.+++.+
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 45678899999999999999999987
No 221
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.47 E-value=0.0021 Score=56.93 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=23.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
++..|.|+||.||||||+++.|+..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 57789999999999999999999877
No 222
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.46 E-value=0.0018 Score=52.13 Aligned_cols=26 Identities=27% Similarity=0.290 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
....+|+|+|.+|+||||+..+|...
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcC
Confidence 45679999999999999999999753
No 223
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.44 E-value=0.0021 Score=57.56 Aligned_cols=27 Identities=19% Similarity=0.241 Sum_probs=24.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.+|..|.|+||+||||||+++.|+..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999999876
No 224
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=96.43 E-value=0.0018 Score=53.77 Aligned_cols=25 Identities=16% Similarity=0.197 Sum_probs=21.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
.+++++++|+||||||++|..+...
T Consensus 4 ~~mi~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 4 MAEICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHH
Confidence 4678999999999999999886443
No 225
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.42 E-value=0.0019 Score=57.15 Aligned_cols=38 Identities=21% Similarity=0.250 Sum_probs=29.2
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhC----C--CeechhHHHHH
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLE----V--PHISMGSLVRQ 100 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g----~--~~is~~dllr~ 100 (273)
+..++|.||||+|||+++..|+..+. . .++++.+++.+
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~ 195 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAID 195 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHH
Confidence 56788999999999999999998653 3 34666666543
No 226
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.39 E-value=0.0015 Score=65.11 Aligned_cols=37 Identities=22% Similarity=0.349 Sum_probs=30.7
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeech--hHHHH
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM--GSLVR 99 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~--~dllr 99 (273)
+.-|+|.||||+|||.+|+.+|.+++.+++++ .+++.
T Consensus 511 ~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s 549 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 549 (806)
T ss_dssp CSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHT
T ss_pred CceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhc
Confidence 45588999999999999999999999887754 45554
No 227
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.39 E-value=0.0017 Score=57.34 Aligned_cols=32 Identities=16% Similarity=0.106 Sum_probs=26.4
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~ 94 (273)
+..+++.||||+||||+++.|++.++..++.+
T Consensus 48 ~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i 79 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVAKALCHDVNADMMFV 79 (324)
T ss_dssp CSEEEECSSTTSSHHHHHHHHHHHTTEEEEEE
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEE
Confidence 34567788899999999999999998766644
No 228
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.38 E-value=0.0027 Score=49.72 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~ 85 (273)
.+..+|+|+|.+|+||||+..+|..
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 4578999999999999999999965
No 229
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.38 E-value=0.0015 Score=56.07 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhC
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLLE 88 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~g 88 (273)
..|+|.|+||+|||++|+.|++..+
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTST
T ss_pred CCEEEECCCCCcHHHHHHHHHHhcC
Confidence 4688999999999999999999864
No 230
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.38 E-value=0.0015 Score=65.41 Aligned_cols=33 Identities=18% Similarity=0.194 Sum_probs=28.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~ 94 (273)
.+..|+|+||||+||||+++.|+..++.+++.+
T Consensus 237 ~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v 269 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLI 269 (806)
T ss_dssp CCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEE
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEE
Confidence 456799999999999999999999998776554
No 231
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.37 E-value=0.0025 Score=55.13 Aligned_cols=27 Identities=15% Similarity=0.198 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.++-.++|+||.||||||+.+.|+..+
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 357789999999999999999999876
No 232
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.36 E-value=0.0022 Score=50.04 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
.+..+|+|+|.+|+||||+..+|...
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcC
Confidence 35689999999999999999999863
No 233
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.34 E-value=0.0022 Score=52.14 Aligned_cols=25 Identities=32% Similarity=0.380 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
...+|+|+|++||||||+.++|+..
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 4578999999999999999999864
No 234
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.32 E-value=0.0021 Score=51.54 Aligned_cols=27 Identities=19% Similarity=0.210 Sum_probs=22.7
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 60 PRRGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 60 ~~~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
+.+..+|+|+|.+|+||||+..+|...
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcC
Confidence 346789999999999999999999864
No 235
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.32 E-value=0.0021 Score=53.86 Aligned_cols=25 Identities=16% Similarity=0.129 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
++..+.|+|+|||||||++..|+..
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 6778999999999999999999984
No 236
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.32 E-value=0.0026 Score=50.24 Aligned_cols=26 Identities=19% Similarity=0.263 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
.+..+|+|+|.+|+||||+..+|...
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 45689999999999999999999865
No 237
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.32 E-value=0.0024 Score=57.28 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHh
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
..++|+||||+||||+++.+++.+
T Consensus 45 ~~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 45 PRATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 378999999999999999999988
No 238
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.29 E-value=0.0028 Score=56.06 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.+|..+.|+|+.||||||+++.|+..+
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 357789999999999999999999876
No 239
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.29 E-value=0.0023 Score=57.08 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=21.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhC
Q 024067 65 QWVLIGDPGVKKHVYADNLSKLLE 88 (273)
Q Consensus 65 ~Ivi~G~pGSGKsT~a~~La~~~g 88 (273)
.++|.||||+||||+++.|++.+.
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHc
Confidence 388999999999999999999864
No 240
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.29 E-value=0.0029 Score=53.55 Aligned_cols=27 Identities=15% Similarity=-0.103 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.++..++++|+||+||||.+..++.++
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHH
Confidence 357899999999999999999998887
No 241
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.27 E-value=0.0016 Score=57.77 Aligned_cols=24 Identities=29% Similarity=0.410 Sum_probs=22.3
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhC
Q 024067 65 QWVLIGDPGVKKHVYADNLSKLLE 88 (273)
Q Consensus 65 ~Ivi~G~pGSGKsT~a~~La~~~g 88 (273)
.++|.|+||+|||++++.|++.++
T Consensus 47 ~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 47 GVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSC
T ss_pred eEEEECCCCccHHHHHHHHHHhCc
Confidence 488999999999999999999886
No 242
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.26 E-value=0.0023 Score=56.80 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=21.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhC
Q 024067 65 QWVLIGDPGVKKHVYADNLSKLLE 88 (273)
Q Consensus 65 ~Ivi~G~pGSGKsT~a~~La~~~g 88 (273)
.++|.||||+||||+++.|++.++
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 389999999999999999999864
No 243
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.24 E-value=0.003 Score=48.99 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHHH
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
++|+|+|++|+||||+..+|...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999864
No 244
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.24 E-value=0.0032 Score=62.46 Aligned_cols=33 Identities=30% Similarity=0.508 Sum_probs=27.4
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh----------CCCeechh
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLL----------EVPHISMG 95 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~----------g~~~is~~ 95 (273)
...++|+||||+|||++++.|++.+ +..++..+
T Consensus 201 ~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~ 243 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLD 243 (758)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEec
Confidence 4568999999999999999999997 66666553
No 245
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.24 E-value=0.0012 Score=53.50 Aligned_cols=25 Identities=12% Similarity=0.262 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhC
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLLE 88 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~g 88 (273)
..+.|+|++||||||+++.|+..+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4788999999999999999998873
No 246
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.24 E-value=0.0027 Score=53.23 Aligned_cols=33 Identities=15% Similarity=0.185 Sum_probs=25.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh-----CCCeech
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISM 94 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~-----g~~~is~ 94 (273)
++-.++|.|+|||||||++..++... ++.+++.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 56789999999999999999887653 3445554
No 247
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.23 E-value=0.0028 Score=55.28 Aligned_cols=26 Identities=12% Similarity=0.193 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
++-.++|+|+|||||||++..|+..+
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 57789999999999999999998765
No 248
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.23 E-value=0.0023 Score=56.98 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh
Q 024067 65 QWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 65 ~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.++|.||+|+||||+++.|++.+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 38999999999999999999965
No 249
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.19 E-value=0.0029 Score=50.99 Aligned_cols=25 Identities=12% Similarity=0.179 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
+..+|+|+|.+|+||||+..+|...
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHHcC
Confidence 4678999999999999999999753
No 250
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.18 E-value=0.0034 Score=58.39 Aligned_cols=36 Identities=11% Similarity=0.203 Sum_probs=28.2
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh-----CC--CeechhHHH
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLL-----EV--PHISMGSLV 98 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~-----g~--~~is~~dll 98 (273)
+..++|.||||+||||+++.+++.+ +. .+++..++.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~ 172 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFL 172 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHH
Confidence 5578899999999999999999977 44 455555543
No 251
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.18 E-value=0.0032 Score=55.02 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=22.0
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhC
Q 024067 65 QWVLIGDPGVKKHVYADNLSKLLE 88 (273)
Q Consensus 65 ~Ivi~G~pGSGKsT~a~~La~~~g 88 (273)
.++|.||||+||||+++.+++.+.
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHhc
Confidence 489999999999999999999864
No 252
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.18 E-value=0.0031 Score=55.62 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
++..|+|+|++||||||++..|+..+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999999765
No 253
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.17 E-value=0.0031 Score=48.90 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHH
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
..+|+|+|++|+||||+..+|...
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Confidence 478999999999999999998753
No 254
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.16 E-value=0.0038 Score=49.32 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
.+..+|+|+|.+|+||||+..+|...
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhC
Confidence 35689999999999999999999753
No 255
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.13 E-value=0.0032 Score=48.71 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHH
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
..+|+++|.+|+||||+..+|...
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHhC
Confidence 468999999999999999999764
No 256
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.13 E-value=0.0038 Score=51.57 Aligned_cols=26 Identities=15% Similarity=0.199 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
+...|+|+|.+||||||+..+|+..+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999999875
No 257
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.13 E-value=0.0032 Score=62.31 Aligned_cols=32 Identities=28% Similarity=0.418 Sum_probs=26.9
Q ss_pred CCCe-EEEEEcCCCCChhHHHHHHHHHhCCCee
Q 024067 61 RRGV-QWVLIGDPGVKKHVYADNLSKLLEVPHI 92 (273)
Q Consensus 61 ~~~~-~Ivi~G~pGSGKsT~a~~La~~~g~~~i 92 (273)
.++. .++|.||||+|||++|+.|++.++.+++
T Consensus 485 ~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~ 517 (758)
T 1r6b_X 485 HKPVGSFLFAGPTGVGKTEVTVQLSKALGIELL 517 (758)
T ss_dssp TSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEE
T ss_pred CCCceEEEEECCCCCcHHHHHHHHHHHhcCCEE
Confidence 3443 6889999999999999999999986554
No 258
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.11 E-value=0.0036 Score=50.41 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=23.5
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 60 PRRGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 60 ~~~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
+.+..+|+|+|.+|+||||+..+|...
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcC
Confidence 356789999999999999999999764
No 259
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.11 E-value=0.0035 Score=51.05 Aligned_cols=25 Identities=32% Similarity=0.380 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
...+|+|+|++||||||+.++|+..
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcC
Confidence 3578999999999999999999864
No 260
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.10 E-value=0.0028 Score=53.85 Aligned_cols=26 Identities=19% Similarity=0.212 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.+-.+.|+||.||||||+.+.|+..+
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 57789999999999999999998654
No 261
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.10 E-value=0.0038 Score=58.03 Aligned_cols=26 Identities=23% Similarity=0.240 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
++..|+++|++||||||++..|+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 57889999999999999999999776
No 262
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.09 E-value=0.0034 Score=49.51 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHH
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSK 85 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~ 85 (273)
..+|+|+|++|+||||+..+|..
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHC
T ss_pred ccEEEEECCCCCCHHHHHHHHhC
Confidence 36899999999999999999975
No 263
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.08 E-value=0.003 Score=57.11 Aligned_cols=28 Identities=14% Similarity=0.304 Sum_probs=25.3
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~ 90 (273)
+.++.|+|++||||||+++.|+..+...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 6789999999999999999999988654
No 264
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.08 E-value=0.0017 Score=65.04 Aligned_cols=32 Identities=22% Similarity=0.324 Sum_probs=27.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeec
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHIS 93 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is 93 (273)
.+..++|.||||+||||+++.|+..++..++.
T Consensus 510 ~~~~vLL~GppGtGKT~Lakala~~~~~~~i~ 541 (806)
T 1ypw_A 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFIS 541 (806)
T ss_dssp CCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCC
T ss_pred CCceeEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 35568899999999999999999999766554
No 265
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.06 E-value=0.0034 Score=51.12 Aligned_cols=30 Identities=27% Similarity=0.241 Sum_probs=22.7
Q ss_pred CCCCCCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 57 GSPPRRGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 57 ~~~~~~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
++...+..+|+|+|.+|+||||+..+|...
T Consensus 18 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 18 GMPLVRYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp -----CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCCCCCcEEEEEECCCCcCHHHHHHHHHhC
Confidence 344456789999999999999999999864
No 266
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.06 E-value=0.0038 Score=49.34 Aligned_cols=26 Identities=19% Similarity=0.337 Sum_probs=22.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
.+..+|+|+|++|+||||+..+|...
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhC
Confidence 35678999999999999999998753
No 267
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.06 E-value=0.0038 Score=50.83 Aligned_cols=33 Identities=9% Similarity=0.067 Sum_probs=27.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMG 95 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~ 95 (273)
.+.-|+|.|++|+||||+|..|.++ |...++-|
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r-G~~lvaDD 47 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR-GHQLVCDD 47 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT-TCEEEESS
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc-CCeEecCC
Confidence 3567899999999999999999985 87777643
No 268
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.05 E-value=0.0034 Score=49.52 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
.+..+|+|+|++|+||||+..+|...
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceeEEEEECCCCCCHHHHHHHHHcC
Confidence 34678999999999999999999753
No 269
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.04 E-value=0.0034 Score=49.56 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=22.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~ 85 (273)
....+|+|+|.+|+||||+..+|..
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCS
T ss_pred CcceEEEEECCCCCCHHHHHHHHhc
Confidence 4568999999999999999998864
No 270
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.04 E-value=0.0047 Score=49.81 Aligned_cols=27 Identities=7% Similarity=0.036 Sum_probs=22.8
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 60 PRRGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 60 ~~~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
+.+..+|+|+|.+|+||||+..++...
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 345689999999999999999888753
No 271
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.04 E-value=0.004 Score=55.62 Aligned_cols=27 Identities=30% Similarity=0.325 Sum_probs=23.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCC
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEV 89 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~ 89 (273)
+..++|.|+||+||||+++.+++.++.
T Consensus 38 ~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp CSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 346889999999999999999999865
No 272
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.03 E-value=0.0037 Score=49.82 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
.+.+|+|+|.||+||||+..+|...
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999999864
No 273
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.03 E-value=0.0044 Score=56.18 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=24.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.+|..|.|+|+.||||||+++.|+..+
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 357889999999999999999999876
No 274
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.02 E-value=0.0043 Score=49.52 Aligned_cols=25 Identities=20% Similarity=0.337 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~ 85 (273)
.+..+|+|+|.+|+||||+..+|..
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhc
Confidence 4568999999999999999999986
No 275
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.02 E-value=0.0046 Score=55.47 Aligned_cols=27 Identities=37% Similarity=0.526 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.++..+.|+|+|||||||+.+.|+..+
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 357899999999999999999998764
No 276
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=96.02 E-value=0.0036 Score=54.47 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh
Q 024067 65 QWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 65 ~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.++|.||||+||||+++.+++.+
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHHh
Confidence 38999999999999999999986
No 277
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.01 E-value=0.0042 Score=48.19 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHH
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
..+|+|+|.+|+||||+..+|...
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 578999999999999999999854
No 278
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.01 E-value=0.0047 Score=51.23 Aligned_cols=26 Identities=23% Similarity=0.302 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
+..+|+|+|.+|+||||+..+|+...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999999875
No 279
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.00 E-value=0.0033 Score=49.97 Aligned_cols=25 Identities=12% Similarity=0.183 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~ 85 (273)
.+..+|+|+|.+|+||||+..+|..
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CceEEEEEECcCCCCHHHHHHHHHc
Confidence 3567999999999999999999974
No 280
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.00 E-value=0.0052 Score=50.67 Aligned_cols=27 Identities=15% Similarity=-0.069 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.++..++++|++||||||.+..++.++
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~ 32 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRA 32 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 346789999999999999999999988
No 281
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.00 E-value=0.0045 Score=50.95 Aligned_cols=27 Identities=11% Similarity=0.001 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.+..+|+|+|++|+||||+..+|....
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356799999999999999999998754
No 282
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.99 E-value=0.0045 Score=48.85 Aligned_cols=25 Identities=16% Similarity=0.194 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~ 85 (273)
.+..+|+|+|.+|+||||+..+|..
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4678999999999999999999975
No 283
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.99 E-value=0.0043 Score=49.73 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=23.5
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 60 PRRGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 60 ~~~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
|.+..+|+|+|++|+||||+..+|...
T Consensus 13 ~~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 13 PDQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CSSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhcC
Confidence 456789999999999999999998754
No 284
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.98 E-value=0.0043 Score=48.74 Aligned_cols=24 Identities=38% Similarity=0.481 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSK 85 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~ 85 (273)
+..+|+|+|.+|+||||+..+|..
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHC
T ss_pred eEEEEEEECCCCccHHHHHHHHhc
Confidence 457899999999999999999874
No 285
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.98 E-value=0.0045 Score=48.17 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHH
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSK 85 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~ 85 (273)
..+|+|+|.+|+||||+..+|..
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHc
Confidence 46899999999999999999975
No 286
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.98 E-value=0.0047 Score=49.64 Aligned_cols=26 Identities=12% Similarity=0.028 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
.+..+|+|+|++|+||||+..+|...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 35679999999999999999999864
No 287
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.97 E-value=0.0042 Score=48.57 Aligned_cols=26 Identities=19% Similarity=0.153 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
.+..+|+|+|.+|+||||+..+|...
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcC
Confidence 35689999999999999999999754
No 288
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.97 E-value=0.0032 Score=53.06 Aligned_cols=26 Identities=27% Similarity=0.229 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.+-.+.|+||.||||||+.+.|+..+
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 56788999999999999999998654
No 289
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.96 E-value=0.0056 Score=48.96 Aligned_cols=26 Identities=15% Similarity=0.114 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
...++|+|+|.+|+||||+..+|...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcC
Confidence 45578999999999999999999765
No 290
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.96 E-value=0.004 Score=48.64 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSK 85 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~ 85 (273)
+..+|+|+|.+|+||||+..+|..
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHc
Confidence 357899999999999999999975
No 291
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.96 E-value=0.0042 Score=48.45 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSK 85 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~ 85 (273)
...+|+|+|++|+||||+..+|..
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CceEEEEECcCCCCHHHHHHHHHh
Confidence 357899999999999999999975
No 292
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.96 E-value=0.0036 Score=53.27 Aligned_cols=26 Identities=19% Similarity=0.279 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
++-.+.|+||.||||||+.+.|+..+
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 57789999999999999999998654
No 293
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.96 E-value=0.0032 Score=50.05 Aligned_cols=24 Identities=17% Similarity=0.297 Sum_probs=21.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLS 84 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La 84 (273)
.+..+|+|+|++|+||||+..+|.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCccEEEEECCCCCCHHHHHHHHh
Confidence 467899999999999999998886
No 294
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.95 E-value=0.0055 Score=53.22 Aligned_cols=27 Identities=15% Similarity=0.135 Sum_probs=23.4
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCC
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEV 89 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~ 89 (273)
...|+|.||||+|||+++..|+..+++
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 346999999999999999999997644
No 295
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.95 E-value=0.0048 Score=48.86 Aligned_cols=26 Identities=23% Similarity=0.232 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
.+..+|+|+|.+|+||||+..++...
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcC
Confidence 45689999999999999999998754
No 296
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.93 E-value=0.0049 Score=50.10 Aligned_cols=27 Identities=30% Similarity=0.399 Sum_probs=22.0
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 60 PRRGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 60 ~~~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
..+..+|+|+|.+|+||||+..+|...
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhC
Confidence 346789999999999999999999753
No 297
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.93 E-value=0.0041 Score=49.00 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSK 85 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~ 85 (273)
+..+|+|+|.+|+||||+..+|..
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHc
Confidence 457899999999999999999974
No 298
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.92 E-value=0.004 Score=53.93 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
++-.++|+|+|||||||++..|+...
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 67789999999999999999998643
No 299
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.92 E-value=0.0043 Score=49.38 Aligned_cols=25 Identities=24% Similarity=0.306 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
+..+|+|+|.+|+||||+..+|...
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhC
Confidence 4678999999999999999999754
No 300
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.92 E-value=0.0053 Score=55.33 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
+..+|+|+|+||+||||++..|+..+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999999876
No 301
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.91 E-value=0.0043 Score=48.35 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHH
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
..+|+|+|++|+||||+..+|...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999998754
No 302
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.91 E-value=0.0052 Score=49.71 Aligned_cols=26 Identities=19% Similarity=0.264 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
.+..+|+|+|.+|+||||+..+|...
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 45789999999999999999999864
No 303
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.91 E-value=0.0045 Score=53.98 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh
Q 024067 65 QWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 65 ~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.++|.||||+||||+++.+++.+
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHh
Confidence 38999999999999999999986
No 304
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.89 E-value=0.005 Score=49.52 Aligned_cols=26 Identities=19% Similarity=0.189 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
.+..+|+|+|.+|+||||+..+|...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45689999999999999999999753
No 305
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.89 E-value=0.0046 Score=52.72 Aligned_cols=27 Identities=19% Similarity=0.400 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.+..+|+|+|.+|+||||+..+|...-
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCC
Confidence 356899999999999999999997543
No 306
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.88 E-value=0.0056 Score=55.14 Aligned_cols=26 Identities=27% Similarity=0.466 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.+..|.|+|+|||||||+...|...+
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999999754
No 307
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.88 E-value=0.0053 Score=57.92 Aligned_cols=27 Identities=19% Similarity=0.322 Sum_probs=24.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.++.+|.|+|+.||||||+++.|+..+
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 467899999999999999999999876
No 308
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.88 E-value=0.0044 Score=51.75 Aligned_cols=25 Identities=16% Similarity=0.023 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
.+-++.|+||.||||||+.+.|+..
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4668889999999999999999864
No 309
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.87 E-value=0.0047 Score=54.34 Aligned_cols=33 Identities=15% Similarity=-0.045 Sum_probs=28.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCeechhH
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGS 96 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~d 96 (273)
..++|.|++|+||||+++.+++..++.+++...
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~~~ 64 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNERPGILIDCRE 64 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHSSEEEEEHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHHcCcEEEEeec
Confidence 578899999999999999999998877776543
No 310
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.86 E-value=0.0057 Score=49.53 Aligned_cols=26 Identities=15% Similarity=0.105 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
.+..+|+|+|.+|+||||+..+|...
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhC
Confidence 35678999999999999999998754
No 311
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.86 E-value=0.0054 Score=48.28 Aligned_cols=26 Identities=23% Similarity=0.416 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
.+..+|+|+|.+|+||||+..+|...
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcC
Confidence 35689999999999999999999864
No 312
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.86 E-value=0.0045 Score=52.83 Aligned_cols=26 Identities=15% Similarity=0.143 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.+-.+.|+||.||||||+.+.|+..+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 57789999999999999999998765
No 313
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.85 E-value=0.0047 Score=48.21 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
+..+|+|+|++|+||||+..+|...
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 4578999999999999999999764
No 314
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.85 E-value=0.0051 Score=48.68 Aligned_cols=25 Identities=12% Similarity=0.112 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
+..+|+|+|.+|+||||+..+|...
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4679999999999999999999863
No 315
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.84 E-value=0.0043 Score=53.66 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
++-.+.|+||.||||||+.+.|+..+
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 57789999999999999999998655
No 316
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.84 E-value=0.0064 Score=48.31 Aligned_cols=26 Identities=23% Similarity=0.279 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
.+..+|+|+|.+|+||||+..+|...
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34678999999999999999999854
No 317
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.82 E-value=0.006 Score=55.49 Aligned_cols=26 Identities=12% Similarity=0.146 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.+..++|+||+||||||+.+.|+..+
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 46689999999999999999999876
No 318
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.82 E-value=0.0041 Score=54.28 Aligned_cols=26 Identities=31% Similarity=0.498 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
++-.+.|+||.||||||+.+.|+..+
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 57789999999999999999998655
No 319
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.82 E-value=0.0042 Score=49.61 Aligned_cols=27 Identities=11% Similarity=0.062 Sum_probs=21.9
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 60 PRRGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 60 ~~~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
+.+..+|+|+|.+|+||||+..+|...
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcC
Confidence 346789999999999999999999753
No 320
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.82 E-value=0.0068 Score=48.65 Aligned_cols=26 Identities=19% Similarity=0.209 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
....+|+|+|.+|+||||+..+|...
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcC
Confidence 45689999999999999999998753
No 321
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.81 E-value=0.0053 Score=48.59 Aligned_cols=26 Identities=27% Similarity=0.291 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
.+..+|+|+|.+|+||||+..+|...
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcC
Confidence 35678999999999999999998753
No 322
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.81 E-value=0.0042 Score=48.37 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSK 85 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~ 85 (273)
+..+|+|+|.+|+||||+..+|..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHc
Confidence 467899999999999999999975
No 323
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.81 E-value=0.0043 Score=53.78 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.+-.+.|+||.||||||+.+.|+..+
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 57789999999999999999998655
No 324
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.80 E-value=0.0042 Score=49.91 Aligned_cols=22 Identities=23% Similarity=0.492 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHH
Q 024067 64 VQWVLIGDPGVKKHVYADNLSK 85 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~ 85 (273)
.+|+|+|++|+||||+..+|+.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 5799999999999999999975
No 325
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.80 E-value=0.0056 Score=47.84 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHH
Q 024067 64 VQWVLIGDPGVKKHVYADNLSK 85 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~ 85 (273)
.+|+|+|.+|+||||+..+|..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 5799999999999999999864
No 326
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=95.80 E-value=0.009 Score=56.00 Aligned_cols=152 Identities=7% Similarity=-0.032 Sum_probs=76.6
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcc
Q 024067 60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGY 139 (273)
Q Consensus 60 ~~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~ 139 (273)
+.++..|||+||+|+| +.++|.+.+.-.+.+.- -| ..++..-|. ++.. +-...+.+.+.+
T Consensus 221 ~~~~r~iVlsGPsG~G---l~~~Ll~~~p~~f~s~~--TR--pR~gE~dG~-------~Y~F----Ts~~~V~~vl~~-- 280 (468)
T 3shw_A 221 AGFLRPVTIFGPIADV---AREKLAREEPDIYQIAK--SE--PRDAGTDQR-------SSGI----IRLHTIKQIIDQ-- 280 (468)
T ss_dssp CSSCCCEEEESTTHHH---HHHHHHHHCTTTEEECC--CB--C-----------------CB----CCHHHHHHHHTT--
T ss_pred CCCCCEEEEECCCHHH---HHHHHHHhCCCceeeec--CC--CCCcccccc-------cCCc----ccHHHHHHHHHC--
Confidence 4577789999999999 88988888753343321 11 112111111 1111 223444444544
Q ss_pred cCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccC-HHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHH
Q 024067 140 YRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSI-EDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFR 218 (273)
Q Consensus 140 ~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~-~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~ 218 (273)
++.+|||--|....|... ....| ++||+..| .++|.+ +..|.. . ++++.+++++.
T Consensus 281 ---Gk~~iLdId~qg~~~l~~--~~~~p-~~IFI~PPS~e~L~~-~~~rl~-~----------------~see~~~r~~~ 336 (468)
T 3shw_A 281 ---DKHALLDVTPNAVDRLNY--AQWYP-IVVFLNPDSKQGVKT-MRMRLC-P----------------ESRKSARKLYE 336 (468)
T ss_dssp ---TCEEEECCCHHHHHHHHH--TTCCC-EEEEEECSCHHHHHH-HHHHHC-T----------------TCCCCHHHHHH
T ss_pred ---CCeEEEEeCHHHHHHHHh--cCCCC-EEEEEeCcCHHHHHH-HHhccC-C----------------CCHHHHHHHHH
Confidence 588999976544333321 12344 67777765 455544 333321 1 11224566665
Q ss_pred HHHHhhHHHHHHHHhcCcEEEEeCCCCh-hHHHHHHHHHHHhcC
Q 024067 219 IYAEQGKSLEDYYSKQRKLLNFQVAAAP-GETWQGLLSALHLQH 261 (273)
Q Consensus 219 ~y~~~~~~l~~~y~~~~~~~~id~~~s~-~ev~~~I~~~l~~~~ 261 (273)
...+ ++..|...-..+.+| .+. ++.+++|.++|....
T Consensus 337 ~a~~----~e~~~~~~fD~vIvN--ddl~d~a~~~L~~ii~~~~ 374 (468)
T 3shw_A 337 RSHK----LRKNNHHLFTTTINL--NSMNDGWYGALKEAIQQQQ 374 (468)
T ss_dssp HHHH----HHHHHGGGCSEEEEC--BTTBCHHHHHHHHHHHHHH
T ss_pred HHHH----HHHhhhccCCEEEEC--CCcHHHHHHHHHHHHHHhc
Confidence 5432 222333221234444 456 478888888876554
No 327
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.80 E-value=0.0054 Score=54.81 Aligned_cols=33 Identities=12% Similarity=0.088 Sum_probs=26.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh--CCCeech
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL--EVPHISM 94 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~--g~~~is~ 94 (273)
++..++|.||||+||||+|..++... .+.++++
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~ 156 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATV 156 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence 34567899999999999999999864 3567776
No 328
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.80 E-value=0.0062 Score=60.37 Aligned_cols=39 Identities=28% Similarity=0.574 Sum_probs=29.4
Q ss_pred CCCCe-EEEEEcCCCCChhHHHHHHHHHh---C--CCeechhHHH
Q 024067 60 PRRGV-QWVLIGDPGVKKHVYADNLSKLL---E--VPHISMGSLV 98 (273)
Q Consensus 60 ~~~~~-~Ivi~G~pGSGKsT~a~~La~~~---g--~~~is~~dll 98 (273)
|.+|. .++|.||||+|||++|+.|++.+ + +..+++.++.
T Consensus 517 ~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~ 561 (758)
T 3pxi_A 517 PKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYM 561 (758)
T ss_dssp TTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGC
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcc
Confidence 44554 68999999999999999999987 3 3455554443
No 329
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.79 E-value=0.0067 Score=50.57 Aligned_cols=25 Identities=24% Similarity=0.395 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~ 85 (273)
.+..+|+|+|.+|+||||+..+|..
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~ 51 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSR 51 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3678999999999999999999865
No 330
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.78 E-value=0.0052 Score=47.88 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=19.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHH
Q 024067 63 GVQWVLIGDPGVKKHVYADNLS 84 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La 84 (273)
..+|+|+|.+|+||||+..+|.
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHC
T ss_pred eEEEEEECCCCCCHHHHHHHHc
Confidence 4689999999999999999885
No 331
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.78 E-value=0.0047 Score=53.51 Aligned_cols=26 Identities=31% Similarity=0.383 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
++-++.|+||.||||||+.+.|+..+
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 57789999999999999999998655
No 332
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=95.78 E-value=0.0031 Score=51.57 Aligned_cols=25 Identities=16% Similarity=0.312 Sum_probs=22.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~ 85 (273)
.++.+|+|+|++||||||+.+.|+.
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4678999999999999999998864
No 333
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.78 E-value=0.0045 Score=53.01 Aligned_cols=26 Identities=15% Similarity=0.328 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
++-++.|+|+.||||||+.+.|+..+
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 57789999999999999999998765
No 334
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.77 E-value=0.0055 Score=52.53 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
++-.+.|+|+.||||||+.+.|+..
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5778999999999999999999874
No 335
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.77 E-value=0.0048 Score=53.63 Aligned_cols=26 Identities=31% Similarity=0.331 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
++-++.|+||.||||||+.+.|+..+
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 57789999999999999999998765
No 336
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.76 E-value=0.0049 Score=49.40 Aligned_cols=28 Identities=11% Similarity=-0.044 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE 88 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g 88 (273)
.+..+|+|+|.+|+||||+.+.|...+.
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 3567999999999999999988876553
No 337
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.76 E-value=0.006 Score=49.00 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=21.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~ 85 (273)
.+..+|+|+|.+|+||||+..+|..
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHc
Confidence 3567999999999999999999875
No 338
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.76 E-value=0.0066 Score=47.97 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
.+..+|+|+|.+|+||||+..+|...
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhC
Confidence 45689999999999999999998754
No 339
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.76 E-value=0.0069 Score=53.98 Aligned_cols=27 Identities=19% Similarity=0.274 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.++..|.|+|++|+||||++..||..+
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 357789999999999999999999876
No 340
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.76 E-value=0.0037 Score=59.16 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=22.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhC
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLLE 88 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~g 88 (273)
..++|.||||+|||++|+.|++.++
T Consensus 42 ~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred CeeEeecCchHHHHHHHHHHHHHHh
Confidence 4789999999999999999999874
No 341
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.75 E-value=0.0049 Score=53.21 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
++-.+.|+||.||||||+.+.|+..+
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 57789999999999999999998765
No 342
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.75 E-value=0.0054 Score=49.40 Aligned_cols=26 Identities=15% Similarity=0.189 Sum_probs=21.7
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHH
Q 024067 60 PRRGVQWVLIGDPGVKKHVYADNLSK 85 (273)
Q Consensus 60 ~~~~~~Ivi~G~pGSGKsT~a~~La~ 85 (273)
+....+|+|+|.+|+||||+..+|..
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhc
Confidence 45678999999999999999998864
No 343
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.75 E-value=0.0079 Score=48.41 Aligned_cols=26 Identities=23% Similarity=0.385 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
....+|+|+|.+|+||||+..+|...
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcC
Confidence 45689999999999999999999753
No 344
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.74 E-value=0.0059 Score=52.89 Aligned_cols=25 Identities=20% Similarity=0.302 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
++-++.|+||.||||||+.+.|+..
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5778999999999999999999875
No 345
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.73 E-value=0.0062 Score=49.07 Aligned_cols=26 Identities=15% Similarity=0.203 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
.+..+|+|+|.+|+||||+..+|...
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhC
Confidence 35689999999999999999998764
No 346
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.73 E-value=0.0049 Score=53.09 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.+-.+.|+||.||||||+.+.|+..+
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 57789999999999999999998655
No 347
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.73 E-value=0.0064 Score=48.19 Aligned_cols=25 Identities=16% Similarity=0.138 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
+..+|+|+|.+|+||||+..+|...
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHhhC
Confidence 4578999999999999999999854
No 348
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.72 E-value=0.0049 Score=52.49 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
++-.+.|+||.||||||+.+.|+..+
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 56789999999999999999998655
No 349
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.72 E-value=0.0055 Score=52.31 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHh
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
-.+.|+||.||||||+.+.|+..+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 578899999999999999998655
No 350
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.72 E-value=0.0049 Score=52.10 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
++-.+.|+||.||||||+.+.|+..+
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 57789999999999999999998765
No 351
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.72 E-value=0.0059 Score=48.93 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
+..+|+|+|.+|+||||+..+|...
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcC
Confidence 3578999999999999999999864
No 352
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.71 E-value=0.0064 Score=49.36 Aligned_cols=26 Identities=19% Similarity=0.362 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
.+..+|+|+|.+|+||||+..+|...
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcC
Confidence 45689999999999999999999764
No 353
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.69 E-value=0.0083 Score=50.93 Aligned_cols=27 Identities=19% Similarity=0.356 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.+...+++.|.+|+||||++..|+..+
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 456788999999999999999999765
No 354
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.69 E-value=0.0068 Score=54.62 Aligned_cols=26 Identities=19% Similarity=0.221 Sum_probs=24.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
++..+.|+|+|||||||++..|+...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 67889999999999999999999876
No 355
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.69 E-value=0.0054 Score=52.90 Aligned_cols=26 Identities=31% Similarity=0.395 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
++-.+.|+||.||||||+.+.|+..+
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 57789999999999999999998654
No 356
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.68 E-value=0.0067 Score=54.91 Aligned_cols=34 Identities=18% Similarity=0.096 Sum_probs=27.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh---C--CCeechh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL---E--VPHISMG 95 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~---g--~~~is~~ 95 (273)
++..+.|.|||||||||++..++..+ + +.+|+..
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E 98 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAE 98 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 67789999999999999999999875 2 3466653
No 357
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.68 E-value=0.0045 Score=51.96 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
++-++.|+||.||||||+.+.|+..+
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 56688999999999999999998654
No 358
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.68 E-value=0.0078 Score=48.44 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSK 85 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~ 85 (273)
...+|+|+|.+|+||||+..+|..
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHc
Confidence 468999999999999999999976
No 359
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.68 E-value=0.0057 Score=49.37 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
.+..+|+|+|.+|+||||+..+|...
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHC
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcC
Confidence 45689999999999999999999754
No 360
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.68 E-value=0.0061 Score=51.34 Aligned_cols=26 Identities=19% Similarity=0.336 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
....+|+|+|.+|+||||+...|...
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCC
Confidence 35689999999999999999999753
No 361
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.67 E-value=0.0058 Score=48.62 Aligned_cols=26 Identities=15% Similarity=0.280 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
.+..+|+|+|++|+||||+..+|...
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcC
Confidence 35689999999999999999999754
No 362
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.65 E-value=0.006 Score=56.65 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.+..|+|+|+||+||||++..|+..+
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999876
No 363
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=95.63 E-value=0.0065 Score=49.14 Aligned_cols=25 Identities=12% Similarity=0.102 Sum_probs=21.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
+..+|+|+|++|+||||+..+|...
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999863
No 364
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.60 E-value=0.0057 Score=52.49 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
++-.+.|+||.||||||+.+.|+..+
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 56789999999999999999998654
No 365
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.59 E-value=0.005 Score=55.72 Aligned_cols=27 Identities=19% Similarity=0.199 Sum_probs=24.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLE 88 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g 88 (273)
.+..++|+|+.||||||+.+.|+..+.
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 466899999999999999999998774
No 366
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.59 E-value=0.0057 Score=53.41 Aligned_cols=26 Identities=27% Similarity=0.496 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
++-++.|+||.||||||+.+.|+..+
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 57789999999999999999998655
No 367
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.58 E-value=0.0062 Score=52.71 Aligned_cols=26 Identities=19% Similarity=0.344 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.+-.+.|+|+.||||||+.+.|+..+
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 57789999999999999999998655
No 368
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.58 E-value=0.0083 Score=46.60 Aligned_cols=23 Identities=13% Similarity=0.104 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHHH
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
.+|+|+|.+|+||||+..+|...
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 37899999999999999999754
No 369
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.57 E-value=0.0082 Score=48.93 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=21.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~ 85 (273)
....+|+|+|.+|+||||+..+|..
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcceEEEEECCCCCCHHHHHHHHHh
Confidence 4568999999999999999999975
No 370
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.55 E-value=0.0093 Score=53.94 Aligned_cols=25 Identities=16% Similarity=0.129 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
+-.|+|+||+||||||+.+.|+..+
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc
Confidence 4489999999999999999998766
No 371
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.55 E-value=0.0085 Score=53.67 Aligned_cols=27 Identities=22% Similarity=0.455 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.++..|+|+|+||+||||+...|+..+
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 357889999999999999999998765
No 372
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.54 E-value=0.0085 Score=50.17 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSK 85 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~ 85 (273)
++..++|.|+||+|||++|..++.
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHH
Confidence 577899999999999999998764
No 373
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.54 E-value=0.0081 Score=47.93 Aligned_cols=26 Identities=12% Similarity=0.219 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
.+..+|+|+|.+|+||||+..+|...
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 35789999999999999999998753
No 374
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.54 E-value=0.0086 Score=47.47 Aligned_cols=24 Identities=21% Similarity=0.373 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSK 85 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~ 85 (273)
+..+|+|+|.+|+||||+..+|..
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHc
Confidence 457899999999999999999875
No 375
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.53 E-value=0.0082 Score=48.60 Aligned_cols=26 Identities=35% Similarity=0.492 Sum_probs=21.3
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHH
Q 024067 60 PRRGVQWVLIGDPGVKKHVYADNLSK 85 (273)
Q Consensus 60 ~~~~~~Ivi~G~pGSGKsT~a~~La~ 85 (273)
+.+..+|+|+|.+|+||||+..+|..
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHh
Confidence 34678999999999999999999874
No 376
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.53 E-value=0.0086 Score=48.56 Aligned_cols=26 Identities=15% Similarity=0.180 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
....+|+|+|.+|+||||+..+|...
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTC
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcC
Confidence 35679999999999999999998753
No 377
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.52 E-value=0.0079 Score=52.21 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHh
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
..+.|+|++||||||+.+.|+...
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999876
No 378
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.52 E-value=0.0094 Score=53.10 Aligned_cols=29 Identities=17% Similarity=0.206 Sum_probs=25.2
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCe
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPH 91 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~ 91 (273)
+..++|.||||+||||+++.+++.+....
T Consensus 24 ~~a~L~~G~~G~GKt~~a~~la~~l~~~~ 52 (334)
T 1a5t_A 24 HHALLIQALPGMGDDALIYALSRYLLCQQ 52 (334)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHTCSS
T ss_pred ceeEEEECCCCchHHHHHHHHHHHHhCCC
Confidence 45688999999999999999999987643
No 379
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.49 E-value=0.0088 Score=48.41 Aligned_cols=25 Identities=12% Similarity=0.213 Sum_probs=22.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~ 85 (273)
.+..+|+|+|.+|+||||+..+|..
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh
Confidence 4578999999999999999999853
No 380
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.48 E-value=0.0066 Score=52.21 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
++-.+.|+||.||||||+.+.|+..+
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 56789999999999999999998654
No 381
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.48 E-value=0.0082 Score=49.26 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
.+..+|+|+|.+|+||||+..+|...
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhC
Confidence 45689999999999999999998763
No 382
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.47 E-value=0.0082 Score=48.39 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
.+..+|+|+|.+|+||||+..+|...
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcC
Confidence 35689999999999999999998764
No 383
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.46 E-value=0.0094 Score=47.71 Aligned_cols=25 Identities=12% Similarity=0.138 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~ 85 (273)
.+..+|+|+|.+|+||||+..+|..
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3568999999999999999999984
No 384
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.46 E-value=0.0074 Score=48.11 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHHH
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
.+|+|+|.+|+||||+..+|...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCc
Confidence 57999999999999999999753
No 385
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.46 E-value=0.0066 Score=49.45 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=21.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~ 85 (273)
....+|+|+|.+|+||||+..+|..
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHh
Confidence 3567999999999999999998853
No 386
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=95.45 E-value=0.0066 Score=53.49 Aligned_cols=25 Identities=24% Similarity=0.310 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
+..|+|.|+||+|||++|+.|++..
T Consensus 25 ~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp TSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEECCCCchHHHHHHHHHHhC
Confidence 4468899999999999999999864
No 387
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.45 E-value=0.0061 Score=61.32 Aligned_cols=25 Identities=36% Similarity=0.565 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
+..++|+|+||+||||+++.|++.+
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHHHHHHH
Confidence 3457899999999999999999987
No 388
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.45 E-value=0.0071 Score=48.44 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
+..+|+|+|.+|+||||+..+|...
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcC
Confidence 4578999999999999999999754
No 389
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.43 E-value=0.0089 Score=48.98 Aligned_cols=26 Identities=12% Similarity=-0.054 Sum_probs=21.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
.+..+|+|+|.+|+||||+..+|...
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35678999999999999999999864
No 390
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.43 E-value=0.0062 Score=49.39 Aligned_cols=27 Identities=11% Similarity=-0.007 Sum_probs=21.4
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 60 PRRGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 60 ~~~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
+.+..+|+|+|.+|+||||+.+.|...
T Consensus 17 ~~~~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 17 QGSKPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp ---CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred cCcceEEEEECCCCCCHHHHHHHHHhc
Confidence 345689999999999999999887654
No 391
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.42 E-value=0.0083 Score=54.36 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.+-.+.|+||.||||||+.+.|+...
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 57789999999999999999998754
No 392
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=95.42 E-value=0.011 Score=48.38 Aligned_cols=26 Identities=19% Similarity=0.170 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
.+..+|+|+|.+|+||||+..+|...
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcC
Confidence 35689999999999999999998753
No 393
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.42 E-value=0.0088 Score=49.19 Aligned_cols=26 Identities=19% Similarity=0.221 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
.+..+|+|+|.+|+||||+..+|...
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcC
Confidence 35689999999999999999999864
No 394
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.41 E-value=0.0096 Score=56.37 Aligned_cols=27 Identities=15% Similarity=0.182 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.++..|+|+|+|||||||++..|+..+
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 356789999999999999999999766
No 395
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.38 E-value=0.01 Score=47.75 Aligned_cols=27 Identities=15% Similarity=0.171 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
....+|+|+|.+|+||||+..+|...-
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCC
Confidence 356899999999999999999998753
No 396
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.37 E-value=0.0094 Score=53.73 Aligned_cols=34 Identities=18% Similarity=0.052 Sum_probs=27.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh-----CCCeechh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMG 95 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~-----g~~~is~~ 95 (273)
++..+.|.|+|||||||++..++... .+.++++.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E 98 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 98 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 67789999999999999999998654 35566653
No 397
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.37 E-value=0.0075 Score=60.66 Aligned_cols=27 Identities=30% Similarity=0.539 Sum_probs=23.6
Q ss_pred CCCe-EEEEEcCCCCChhHHHHHHHHHh
Q 024067 61 RRGV-QWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 61 ~~~~-~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.+|. .++|.||||+|||++|+.|++.+
T Consensus 585 ~~p~~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 585 NRPIGSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp SSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3443 78899999999999999999988
No 398
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.35 E-value=0.0096 Score=53.93 Aligned_cols=26 Identities=23% Similarity=0.236 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.+-.+.|+||.||||||+.+.|+..+
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 57789999999999999999998654
No 399
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.35 E-value=0.0093 Score=49.15 Aligned_cols=25 Identities=32% Similarity=0.404 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~ 85 (273)
.+..+|+|+|.+|+||||+..+|..
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC
T ss_pred cceEEEEEECcCCCCHHHHHHHHHc
Confidence 3568999999999999999999974
No 400
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=95.34 E-value=0.025 Score=51.78 Aligned_cols=151 Identities=8% Similarity=-0.014 Sum_probs=77.3
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcc
Q 024067 60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGY 139 (273)
Q Consensus 60 ~~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~ 139 (273)
+.++..|||+||+| +|+.++|.+.+.-.+.++ .+ ...++..-|. +...++. ..+.+.+.+
T Consensus 229 ~~~~r~iVlsGPsg---~tl~~~L~~~~p~~~~~~---tr-~pR~gE~dG~-------~Y~Fv~~----~~V~~~~~~-- 288 (391)
T 3tsz_A 229 AGFLRPVTIFGPIA---DVAREKLAREEPDIYQIA---KS-EPRDAGTDQR-------SSGIIRL----HTIKQIIDQ-- 288 (391)
T ss_dssp CSSCCCEEEESTTH---HHHHHHHHHHCTTTEEEC---CC-CCCCSSSCCC---------CCCCH----HHHHHHHTT--
T ss_pred CCCCCEEEEECCCH---HHHHHHHHhhCccccccc---cC-CCCCcccCCc-------cCCcCcH----HHHHHHHHc--
Confidence 45677899999998 899999998875444442 12 1111111000 0112232 334444443
Q ss_pred cCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccC-HHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHH
Q 024067 140 YRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSI-EDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFR 218 (273)
Q Consensus 140 ~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~-~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~ 218 (273)
++.+|||--|....|... ....| ++||+..| .++|.+| ..|.. .++++.++++++
T Consensus 289 ---Gk~~iLdId~qg~~~l~~--~~~~p-~~IFI~PPS~~~L~~~-~~r~~-----------------~~s~e~~~~~~~ 344 (391)
T 3tsz_A 289 ---DKHALLDVTPNAVDRLNY--AQWYP-IVVFLNPDSKQGVKTM-RMRLC-----------------PESRKSARKLYE 344 (391)
T ss_dssp ---TCEEEECCCHHHHHHHHH--TTCCC-EEEEEECCCHHHHHHH-HHHHC-----------------SSCCCCHHHHHH
T ss_pred ---CCEEEEEeCHHHHHHHHh--CCCCC-EEEEEeCcCHHHHHHH-HhcCC-----------------CCCHHHHHHHHH
Confidence 588999976544333321 12344 56777765 5666554 44431 112224566655
Q ss_pred HHHHhhHHHHHHHHhcCcEEEEeCCCChh-HHHHHHHHHHHhc
Q 024067 219 IYAEQGKSLEDYYSKQRKLLNFQVAAAPG-ETWQGLLSALHLQ 260 (273)
Q Consensus 219 ~y~~~~~~l~~~y~~~~~~~~id~~~s~~-ev~~~I~~~l~~~ 260 (273)
...+ ++..|...-..+.+| .+.+ +.+++|.++|...
T Consensus 345 ~a~~----~e~~~~~~fd~vivN--d~l~~~a~~~l~~ii~~~ 381 (391)
T 3tsz_A 345 RSHK----LRKNNHHLFTTTINL--NSMNDGWYGALKEAIQQQ 381 (391)
T ss_dssp HHHH----HHHHHGGGCSEEEEC--CTTCCHHHHHHHHHHHHH
T ss_pred HHHH----HHHhccccCcEEEEC--CCcHHHHHHHHHHHHHHh
Confidence 4422 222343221234444 4555 5778888777654
No 401
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.33 E-value=0.0098 Score=54.32 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.+-.+.|+||.||||||+.+.|+..+
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 57789999999999999999998755
No 402
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.32 E-value=0.0084 Score=48.86 Aligned_cols=24 Identities=17% Similarity=0.184 Sum_probs=21.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSK 85 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~ 85 (273)
+..+|+|+|++|+||||+..+|..
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 457899999999999999999864
No 403
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.32 E-value=0.011 Score=48.20 Aligned_cols=26 Identities=27% Similarity=0.272 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
.+..+|+|+|.+|+||||+..+|...
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcC
Confidence 35679999999999999999998753
No 404
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=95.31 E-value=0.01 Score=53.84 Aligned_cols=28 Identities=18% Similarity=0.262 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE 88 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g 88 (273)
.+..+|+|+|.+||||||+++++.-.++
T Consensus 31 ~~~~killlG~~~SGKST~~kq~~i~~~ 58 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQMRIIHG 58 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHS
T ss_pred cCccEEEEECCCCCcHHHHHHHHHHHhC
Confidence 4688999999999999999999965443
No 405
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.30 E-value=0.013 Score=54.20 Aligned_cols=27 Identities=15% Similarity=-0.021 Sum_probs=24.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLE 88 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g 88 (273)
++-.|+|+||.||||||+.+.|+..+.
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 456889999999999999999998874
No 406
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.28 E-value=0.01 Score=53.80 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.+-.+.|+||.||||||+.+.|+..+
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 57789999999999999999998755
No 407
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.28 E-value=0.012 Score=51.90 Aligned_cols=25 Identities=24% Similarity=0.282 Sum_probs=23.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
+..|+++|++|+||||++..|+..+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 7788899999999999999999877
No 408
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.27 E-value=0.012 Score=52.84 Aligned_cols=26 Identities=12% Similarity=-0.033 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
.++..+.|.|+|||||||++..++..
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 36778999999999999999999986
No 409
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.27 E-value=0.01 Score=47.93 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=21.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSK 85 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~ 85 (273)
...+|+|+|.+|+||||+..+|..
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC
T ss_pred CceEEEEECCCCCCHHHHHHHHhc
Confidence 457899999999999999999864
No 410
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.26 E-value=0.011 Score=48.59 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~ 85 (273)
.+..+|+|+|.+|+||||+..+|..
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHC
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhc
Confidence 4568999999999999999999975
No 411
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=95.24 E-value=0.01 Score=53.62 Aligned_cols=26 Identities=23% Similarity=0.226 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.+-.+.|+||.||||||+.+.|+..+
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 56788999999999999999998654
No 412
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.23 E-value=0.0096 Score=54.74 Aligned_cols=24 Identities=21% Similarity=0.180 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSK 85 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~ 85 (273)
++-.+.|+|+|||||||++..|+-
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~ 200 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAV 200 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHH
Confidence 577899999999999999998873
No 413
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=95.23 E-value=0.011 Score=53.82 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.+-.+.|+||.||||||+.+.|+..+
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 57789999999999999999998654
No 414
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=95.22 E-value=0.0088 Score=57.77 Aligned_cols=27 Identities=30% Similarity=0.569 Sum_probs=23.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCC
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEV 89 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~ 89 (273)
+..++|+||||+||||+++.|+..++.
T Consensus 60 g~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 60 KRHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred CCEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 457899999999999999999998753
No 415
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.22 E-value=0.011 Score=50.97 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHH
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
.++|+|+|+||+||||+..+|...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999754
No 416
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.21 E-value=0.014 Score=51.34 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
++..|.|+|++|+||||++..||..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 56788889999999999999999876
No 417
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.21 E-value=0.016 Score=48.70 Aligned_cols=27 Identities=15% Similarity=-0.098 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.++.+.+++|++||||||.+-.++.++
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~ 52 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRT 52 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 457888999999999999999999887
No 418
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.21 E-value=0.0087 Score=48.04 Aligned_cols=26 Identities=15% Similarity=0.166 Sum_probs=21.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
.+..+|+|+|.+|+||||+..+|...
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 45689999999999999999988754
No 419
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.21 E-value=0.012 Score=47.92 Aligned_cols=26 Identities=23% Similarity=0.164 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
....+|+|+|.+|+||||+..+|...
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhC
Confidence 35678999999999999999999863
No 420
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.20 E-value=0.0098 Score=48.41 Aligned_cols=25 Identities=16% Similarity=0.296 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~ 85 (273)
.+..+|+|+|.+|+||||+..+|..
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHh
Confidence 4568999999999999999999864
No 421
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.20 E-value=0.0088 Score=56.00 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.+.++.|+||.||||||+++.|+..+
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 57789999999999999999999865
No 422
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=95.20 E-value=0.0093 Score=52.40 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
++-++.|+|+.||||||+.+.|+..+
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 56789999999999999999998654
No 423
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.20 E-value=0.0051 Score=54.54 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.+-.+.|+||.||||||+.+.|+..+
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCC
Confidence 57789999999999999999998766
No 424
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.18 E-value=0.012 Score=53.53 Aligned_cols=26 Identities=23% Similarity=0.302 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
++-.+.|+||.||||||+.+.|+..+
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 57789999999999999999998655
No 425
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=95.18 E-value=0.012 Score=48.02 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=21.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~ 85 (273)
.+..+|+|+|.+|+||||+..++..
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHh
Confidence 3568999999999999999999875
No 426
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.17 E-value=0.0092 Score=51.65 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
+-++.|+||.||||||+.+.|+..+
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 6789999999999999999998654
No 427
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.14 E-value=0.009 Score=48.07 Aligned_cols=25 Identities=20% Similarity=0.200 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
+..+|+|+|.+|+||||+..+|...
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 5578999999999999999999864
No 428
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.14 E-value=0.012 Score=48.04 Aligned_cols=25 Identities=24% Similarity=0.310 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~ 85 (273)
.+..+|+|+|.+|+||||+..+|..
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHH
T ss_pred ccceEEEEECcCCCCHHHHHHHHhh
Confidence 3567899999999999999999865
No 429
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.12 E-value=0.013 Score=58.01 Aligned_cols=26 Identities=31% Similarity=0.445 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
++..++|+|+||+||||+++.|++.+
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 35678999999999999999999987
No 430
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=95.10 E-value=0.012 Score=53.53 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.+-.+.|+||.||||||+.+.|+..+
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 56788999999999999999998654
No 431
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.10 E-value=0.018 Score=48.77 Aligned_cols=25 Identities=20% Similarity=0.126 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
..+|++.|+||+||||++-.++..+
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l 30 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQ 30 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHH
Confidence 3679999999999999998888775
No 432
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=95.09 E-value=0.013 Score=48.68 Aligned_cols=25 Identities=32% Similarity=0.403 Sum_probs=21.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~ 85 (273)
....+|+|+|.||+||||+..++..
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 3457899999999999999999874
No 433
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=95.07 E-value=0.015 Score=48.05 Aligned_cols=26 Identities=27% Similarity=0.254 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
.+..+|+|+|.+|+||||+..+|...
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcC
Confidence 35689999999999999999999764
No 434
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=95.07 E-value=0.016 Score=50.91 Aligned_cols=31 Identities=10% Similarity=-0.032 Sum_probs=25.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCC--Ceech
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLLEV--PHISM 94 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~g~--~~is~ 94 (273)
..++|.|++|+||||+++.+++..+. .+++.
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~ 63 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDL 63 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEc
Confidence 38889999999999999999998753 34554
No 435
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.05 E-value=0.016 Score=46.94 Aligned_cols=25 Identities=32% Similarity=0.422 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
...+|+|+|.||+||||+..++...
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3578999999999999999999864
No 436
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.05 E-value=0.0079 Score=53.75 Aligned_cols=26 Identities=19% Similarity=0.466 Sum_probs=23.1
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhC
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLE 88 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g 88 (273)
+..++|+|++||||||+.+.|+..+.
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 55789999999999999999998764
No 437
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.04 E-value=0.013 Score=51.93 Aligned_cols=26 Identities=19% Similarity=0.152 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
++..++|.|+|||||||++..++...
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 56789999999999999999999764
No 438
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.04 E-value=0.014 Score=52.70 Aligned_cols=33 Identities=12% Similarity=0.039 Sum_probs=27.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh-----CCCeech
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISM 94 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~-----g~~~is~ 94 (273)
++..++|.|+||+||||+|..|+... .+.+|++
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 67789999999999999999998764 3567776
No 439
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=95.03 E-value=0.009 Score=47.45 Aligned_cols=24 Identities=33% Similarity=0.375 Sum_probs=11.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSK 85 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~ 85 (273)
...+|+|+|.+|+||||+..+|..
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEEEEECCCCC-----------
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 467899999999999999998864
No 440
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=95.03 E-value=0.015 Score=47.96 Aligned_cols=28 Identities=29% Similarity=0.539 Sum_probs=22.9
Q ss_pred CCCCeEEEEEcCCCCChhHHHHH-HHHHh
Q 024067 60 PRRGVQWVLIGDPGVKKHVYADN-LSKLL 87 (273)
Q Consensus 60 ~~~~~~Ivi~G~pGSGKsT~a~~-La~~~ 87 (273)
+.+..+|+|+|.+|+||||+..+ +...+
T Consensus 12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~ 40 (221)
T 3gj0_A 12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEF 40 (221)
T ss_dssp CCCEEEEEEEECTTSSHHHHHTTBHHHHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCC
Confidence 34568999999999999999998 54444
No 441
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=95.00 E-value=0.0089 Score=53.93 Aligned_cols=26 Identities=19% Similarity=0.491 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.+-.+.|+||.||||||+.+.|+..+
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCccHHHHHHHHHcCC
Confidence 56789999999999999999998654
No 442
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.98 E-value=0.017 Score=53.55 Aligned_cols=27 Identities=22% Similarity=0.278 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.++..|+|+|++|+||||++..||..+
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 356788889999999999999999766
No 443
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=94.98 E-value=0.015 Score=48.22 Aligned_cols=26 Identities=35% Similarity=0.373 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
....+|+|+|.+|+||||+..+|...
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHC
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcC
Confidence 45689999999999999999998753
No 444
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.96 E-value=0.014 Score=51.53 Aligned_cols=25 Identities=12% Similarity=-0.118 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
++..++|.|+|||||||+|..++..
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5778999999999999999999975
No 445
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.94 E-value=0.014 Score=52.85 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHH
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
+..++|+|++|+||||+.+.|+..
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCC
T ss_pred CCEEEEECCCCccHHHHHHHHhcc
Confidence 568899999999999999999754
No 446
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=94.93 E-value=0.011 Score=47.26 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=20.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLS 84 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La 84 (273)
+..+|+|+|.+|+||||+..+|.
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~ 43 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLH 43 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTC
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 57899999999999999999884
No 447
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=94.93 E-value=0.014 Score=53.43 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.+-.+.|+||.||||||+.+.|+..+
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCC
Confidence 57789999999999999999998643
No 448
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=94.91 E-value=0.013 Score=50.23 Aligned_cols=25 Identities=28% Similarity=0.270 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~ 85 (273)
.+..+|+|+|.||+||||+..+|..
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g 27 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTG 27 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHC
Confidence 3567899999999999999999975
No 449
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=94.90 E-value=0.015 Score=49.47 Aligned_cols=25 Identities=16% Similarity=0.302 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
...+|+|+|.||+||||+...|...
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCcHHHHHHHHhCC
Confidence 5689999999999999999998753
No 450
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.90 E-value=0.016 Score=47.37 Aligned_cols=25 Identities=24% Similarity=0.165 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
...+|+|+|.+|+||||+..+|...
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcC
Confidence 4578999999999999999998763
No 451
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.88 E-value=0.018 Score=50.90 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.++-.++|.|+||+||||++..++...
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 357789999999999999999998764
No 452
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=94.85 E-value=0.014 Score=52.74 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=22.2
Q ss_pred CCeEEEE--EcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVL--IGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi--~G~pGSGKsT~a~~La~~~ 87 (273)
.+..++| .|+||+||||+++.+++.+
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 3456777 9999999999999999876
No 453
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=94.84 E-value=0.015 Score=51.52 Aligned_cols=25 Identities=16% Similarity=0.024 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
+...++|+|+.||||||+.+.|...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 3567889999999999999999964
No 454
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.79 E-value=0.019 Score=45.92 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=21.6
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhC
Q 024067 65 QWVLIGDPGVKKHVYADNLSKLLE 88 (273)
Q Consensus 65 ~Ivi~G~pGSGKsT~a~~La~~~g 88 (273)
..+|+|+.||||||+.+.|.-.++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 778999999999999999987665
No 455
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.78 E-value=0.017 Score=55.12 Aligned_cols=29 Identities=21% Similarity=0.314 Sum_probs=25.5
Q ss_pred CCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 59 PPRRGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 59 ~~~~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.+.++-++.|+||.||||||+.+.|+..+
T Consensus 21 ~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 21 TPKNNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp CCCTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45678899999999999999999998754
No 456
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.76 E-value=0.017 Score=50.78 Aligned_cols=24 Identities=29% Similarity=0.342 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
+..+.|+|++||||||+.+.|+ ..
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 5688999999999999999998 54
No 457
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=94.73 E-value=0.018 Score=49.89 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
...+|+|+|.||+||||+..+|...
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHCC
Confidence 3578999999999999999999864
No 458
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=94.70 E-value=0.0094 Score=53.87 Aligned_cols=26 Identities=19% Similarity=0.403 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.+-.+.|+||.||||||+.+.|+..+
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 56789999999999999999998654
No 459
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.68 E-value=0.019 Score=53.47 Aligned_cols=23 Identities=13% Similarity=0.185 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh
Q 024067 65 QWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 65 ~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
.++|.|+|||||||++..+++.+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 78899999999999999999877
No 460
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=94.67 E-value=0.019 Score=55.14 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
...++|.|+||+||||++..|...+
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l 228 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLA 228 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4578899999999999999998765
No 461
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=94.66 E-value=0.018 Score=50.77 Aligned_cols=28 Identities=21% Similarity=0.223 Sum_probs=22.9
Q ss_pred CCCCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 59 PPRRGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 59 ~~~~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
.|..+-.|.|+|.||+||||+..+|...
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3445678999999999999999999753
No 462
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=94.65 E-value=0.016 Score=50.95 Aligned_cols=25 Identities=20% Similarity=0.203 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
+..+|+|+|+||+||||+..+|...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 5568999999999999999999753
No 463
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.64 E-value=0.022 Score=52.98 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
++-.++|.|+||+||||++..++...
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999988754
No 464
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.63 E-value=0.013 Score=55.46 Aligned_cols=27 Identities=7% Similarity=0.224 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLE 88 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g 88 (273)
.+..++|+||+||||||+.+.|+..+.
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 355689999999999999999988763
No 465
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=94.61 E-value=0.0062 Score=49.44 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=20.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLS 84 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La 84 (273)
....+|+|+|.+|+||||+..+|.
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~ 54 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFA 54 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSB
T ss_pred CcceEEEEECCCCCCHHHHHHHHh
Confidence 456899999999999999987764
No 466
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=94.57 E-value=0.011 Score=48.71 Aligned_cols=26 Identities=12% Similarity=0.074 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
...++|+|+|.+|+||||+..+|...
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 35678999999999999999998764
No 467
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=94.56 E-value=0.024 Score=47.40 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=21.1
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHH
Q 024067 60 PRRGVQWVLIGDPGVKKHVYADNLSK 85 (273)
Q Consensus 60 ~~~~~~Ivi~G~pGSGKsT~a~~La~ 85 (273)
|-+-.+|+|+|.+|+|||++..++..
T Consensus 10 P~k~~KivlvGd~~VGKTsLi~r~~~ 35 (216)
T 4dkx_A 10 PLRKFKLVFLGEQSVGKTSLITRFMY 35 (216)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEECcCCcCHHHHHHHHHh
Confidence 34557899999999999999999875
No 468
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.56 E-value=0.024 Score=52.48 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
++..|+|+|++||||||++..|+..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 56788889999999999999999887
No 469
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.56 E-value=0.02 Score=53.08 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=21.1
Q ss_pred CCeE--EEEEcCCCCChhHHHHHHHHH
Q 024067 62 RGVQ--WVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 62 ~~~~--Ivi~G~pGSGKsT~a~~La~~ 86 (273)
+|.. +.|+|++||||||+.+.|+..
T Consensus 39 ~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 39 QGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp -CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 4445 999999999999999999864
No 470
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=94.50 E-value=0.017 Score=50.75 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHH
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
+..+.|+|++||||||+.+.|+..
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTT
T ss_pred CCeEEEECCCCCcHHHHHHHhccc
Confidence 567899999999999999999743
No 471
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=94.49 E-value=0.02 Score=49.17 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHHH
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
++|+|+|.|||||||+...|...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 57999999999999999999764
No 472
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=94.46 E-value=0.021 Score=52.62 Aligned_cols=25 Identities=16% Similarity=0.349 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
.+..+.|+|++||||||+.+.|+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Confidence 3458999999999999999999874
No 473
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=94.44 E-value=0.024 Score=50.39 Aligned_cols=31 Identities=29% Similarity=0.303 Sum_probs=26.6
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~ 94 (273)
+.-++|.|++|+||||++..|.++ |...|+-
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv~d 174 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR-GHRLVAD 174 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT-TCEEEES
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc-CCceecC
Confidence 567999999999999999999886 7777754
No 474
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=94.37 E-value=0.0093 Score=57.62 Aligned_cols=27 Identities=26% Similarity=0.497 Sum_probs=23.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCC
Q 024067 64 VQWVLIGDPGVKKHVYADNLSKLLEVP 90 (273)
Q Consensus 64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~ 90 (273)
..++|+||||+|||++|+.|++.++..
T Consensus 328 ~~vLL~GppGtGKT~LAr~la~~~~r~ 354 (595)
T 3f9v_A 328 IHILIIGDPGTAKSQMLQFISRVAPRA 354 (595)
T ss_dssp CCEEEEESSCCTHHHHHHSSSTTCSCE
T ss_pred cceEEECCCchHHHHHHHHHHHhCCCc
Confidence 379999999999999999999987643
No 475
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=94.33 E-value=0.0075 Score=48.81 Aligned_cols=25 Identities=12% Similarity=0.183 Sum_probs=6.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
+..+|+|+|.+|+||||+..+|...
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEEEC-----------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 4579999999999999999988753
No 476
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=94.31 E-value=0.027 Score=50.67 Aligned_cols=27 Identities=15% Similarity=0.136 Sum_probs=24.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLE 88 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g 88 (273)
++-++.|+|++||||||+.+.|+....
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 577899999999999999999999875
No 477
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.29 E-value=0.026 Score=50.30 Aligned_cols=29 Identities=17% Similarity=0.213 Sum_probs=22.8
Q ss_pred CCCCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 57 GSPPRRGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 57 ~~~~~~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
|..| ++ .+.|.|+||+||||+|..++...
T Consensus 24 GGl~-~G-iteI~G~pGsGKTtL~Lq~~~~~ 52 (333)
T 3io5_A 24 GGMQ-SG-LLILAGPSKSFKSNFGLTMVSSY 52 (333)
T ss_dssp CCBC-SE-EEEEEESSSSSHHHHHHHHHHHH
T ss_pred CCCc-CC-eEEEECCCCCCHHHHHHHHHHHH
Confidence 3334 46 68999999999999998887654
No 478
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.27 E-value=0.022 Score=53.92 Aligned_cols=22 Identities=18% Similarity=0.350 Sum_probs=20.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNL 83 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~L 83 (273)
++-.+.|+|++||||||+++.+
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHH
Confidence 6778999999999999999994
No 479
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=94.23 E-value=0.022 Score=50.14 Aligned_cols=24 Identities=17% Similarity=0.325 Sum_probs=20.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSK 85 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~ 85 (273)
-...|+|+|++|+||||+.+.|..
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC
T ss_pred CCEEEEEECCCCCCHHHHHHHHhC
Confidence 356789999999999999999864
No 480
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.23 E-value=0.035 Score=47.11 Aligned_cols=27 Identities=19% Similarity=0.075 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
..+.+.+++|++||||||.+-+++.++
T Consensus 17 ~~g~l~v~~G~MgsGKTT~lL~~~~r~ 43 (234)
T 2orv_A 17 TRGQIQVILGPMFSGKSTELMRRVRRF 43 (234)
T ss_dssp -CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHH
Confidence 357889999999999999999888877
No 481
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.22 E-value=0.028 Score=51.00 Aligned_cols=34 Identities=18% Similarity=0.083 Sum_probs=27.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh-----CCCeechh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMG 95 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~-----g~~~is~~ 95 (273)
++..++|.|+||+||||+|..++... .+.+|++.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E 111 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE 111 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECC
Confidence 56788899999999999999998764 35677764
No 482
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=94.19 E-value=0.027 Score=51.54 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~ 85 (273)
.++.++.|+|+||+||||+.+.|..
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHC
Confidence 4578999999999999999999987
No 483
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=94.11 E-value=0.025 Score=54.36 Aligned_cols=26 Identities=23% Similarity=0.441 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
+|-.+.|+||.||||||+.+.|+..+
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 46789999999999999999999876
No 484
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=94.11 E-value=0.03 Score=51.97 Aligned_cols=28 Identities=25% Similarity=0.368 Sum_probs=25.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCC
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLEV 89 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~ 89 (273)
++-++.|+|++||||||+.+.|+.....
T Consensus 156 ~Gq~~~IvG~sGsGKSTLl~~Iag~~~~ 183 (438)
T 2dpy_A 156 RGQRMGLFAGSGVGKSVLLGMMARYTRA 183 (438)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCC
Confidence 5778999999999999999999998743
No 485
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=94.10 E-value=0.025 Score=50.17 Aligned_cols=31 Identities=26% Similarity=0.281 Sum_probs=25.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~ 94 (273)
+.-|+|.|++|+||||+|..|.+ .|...|+-
T Consensus 147 g~gvli~G~sG~GKStlal~l~~-~G~~lv~D 177 (312)
T 1knx_A 147 GVGVLLTGRSGIGKSECALDLIN-KNHLFVGD 177 (312)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHT-TTCEEEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH-cCCEEEeC
Confidence 56689999999999999999876 47777754
No 486
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=94.10 E-value=0.012 Score=48.36 Aligned_cols=25 Identities=32% Similarity=0.466 Sum_probs=21.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~ 85 (273)
....+|+|+|.+|+||||+..+|..
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~ 33 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLD 33 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTT
T ss_pred cCccEEEEECCCCCCHHHHHHHHhc
Confidence 3567999999999999999988763
No 487
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=94.09 E-value=0.03 Score=48.37 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHH
Q 024067 63 GVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 63 ~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
..+|+|+|.||+||||+..+|...
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhCC
Confidence 578999999999999999999764
No 488
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=94.07 E-value=0.032 Score=51.55 Aligned_cols=25 Identities=16% Similarity=0.359 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
...+|+|+|+||+||||+..+|...
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCceEEEECCCCCCHHHHHHHHhCC
Confidence 4689999999999999999999865
No 489
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=93.09 E-value=0.0094 Score=48.49 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=21.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~ 85 (273)
.+..+|+|+|.+|+||||+..+|..
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 3578999999999999999988864
No 490
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.00 E-value=0.032 Score=52.86 Aligned_cols=26 Identities=12% Similarity=0.176 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
++-.+.|.|++||||||+++.|+...
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999998764
No 491
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Probab=93.99 E-value=0.49 Score=42.23 Aligned_cols=115 Identities=15% Similarity=0.054 Sum_probs=55.2
Q ss_pred EEEEcCCCCChhH-------HHHHHHHHhCCCeech---hHHHH-HHcc-CCChHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 024067 66 WVLIGDPGVKKHV-------YADNLSKLLEVPHISM---GSLVR-QELS-PRSALYKQIANAVNEGKLVPEDVIFALLSK 133 (273)
Q Consensus 66 Ivi~G~pGSGKsT-------~a~~La~~~g~~~is~---~dllr-~~~~-~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~ 133 (273)
|+|+||.+.|--+ +-..|-++|+..+.-+ .|+.. +.-. .....+..+......+.. .+ +..-+..
T Consensus 145 vvlvGP~~~g~~~td~m~~~l~d~l~~~F~~~i~~tR~~~d~~~~~r~~~~~~~~~~~~e~~~~~~~~--~e-v~seVe~ 221 (337)
T 4dey_A 145 VVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRISITRVTADISLAKRSVLNNPSKHAIIERSNTRSSL--AE-VQSEIER 221 (337)
T ss_dssp EEEECSSCTTSHHHHHHHHHHHHHHHHHTTTSEEEEEECSCGGGC-------------------CCCH--HH-HHHHHHH
T ss_pred eEEECCccccchhHHHHHHHHHHhhHHhcCCccceEeecchhhhcchhhhhcccchhhhcccccccch--HH-HHhHHHH
Confidence 8899999999864 6777778887652211 01111 0000 000011122222222221 11 2223333
Q ss_pred HHHhcccCCcceEEEeCCCC-CHHHHHHHHhhCCCceEEEEcc-CHHHHHHHHhcCC
Q 024067 134 RLEEGYYRGESGFILDGIPR-TRIQAEILDQIVDVDLVINFKS-IEDQLVKRNLESE 188 (273)
Q Consensus 134 ~l~~~~~~~~~g~IlDg~P~-~~~qa~~l~~~~~~d~vI~L~~-~~e~l~~Rl~~R~ 188 (273)
.+... ..++.+|||--+. ...|... ....+ ++||+.. +.++|.+|+.+|+
T Consensus 222 i~~v~--~~Gk~vILDIDvQnGa~qlk~--~~~~~-i~IFI~PPS~eeLe~RL~~RG 273 (337)
T 4dey_A 222 IFELA--RTLQLVVLDADTINHPAQLSK--TSLAP-IVVYVKISSPKVLQRLIKSRG 273 (337)
T ss_dssp HHHHT--TTCCEEEEEETTCCSGGGTTT--SSCCC-EEEEECCSCHHHHHHHHHTTC
T ss_pred HHHHH--hCCCEEEEEeCcHHHHHHHHh--cCCCC-EEEEEECcCHHHHHHHHHhCC
Confidence 33332 2357899997665 5555431 11233 4555554 5799999999887
No 492
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=93.99 E-value=0.024 Score=54.51 Aligned_cols=27 Identities=22% Similarity=0.421 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLE 88 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g 88 (273)
++-.+.|+||.||||||+.+.|+..+.
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g~~~ 394 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITRFYD 394 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhccC
Confidence 467899999999999999999987763
No 493
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.93 E-value=0.036 Score=51.36 Aligned_cols=26 Identities=15% Similarity=0.279 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
++-.++|.|+||+||||++..++...
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999998754
No 494
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=93.93 E-value=0.034 Score=48.89 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
...+|+|+|.||+||||+..+|...
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3578999999999999999998754
No 495
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=93.90 E-value=0.033 Score=53.11 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~ 87 (273)
..+-++.|+|+.||||||+.+.|+..+
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998754
No 496
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.84 E-value=0.094 Score=57.08 Aligned_cols=85 Identities=11% Similarity=0.068 Sum_probs=48.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh-----CCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 024067 61 RRGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRL 135 (273)
Q Consensus 61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~-----g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l 135 (273)
.++..|+|+||||+||||+|..++..- .+.+|++.+.+...... .+|..+.++. --...+.+.....+...+
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~--~~G~dl~~l~-v~~~~~~E~~l~~~~~lv 1501 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAR--KLGVDIDNLL-CSQPDTGEQALEICDALA 1501 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHH--HTTCCTTTCE-EECCSSHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHH--HcCCCchhce-eecCChHHHHHHHHHHHH
Confidence 367899999999999999999997764 24577775433211100 0000000000 002234455555665555
Q ss_pred HhcccCCcceEEEeCC
Q 024067 136 EEGYYRGESGFILDGI 151 (273)
Q Consensus 136 ~~~~~~~~~g~IlDg~ 151 (273)
++. ...-+|+|.+
T Consensus 1502 r~~---~~~lVVIDsi 1514 (2050)
T 3cmu_A 1502 RSG---AVDVIVVDSV 1514 (2050)
T ss_dssp HHT---CCSEEEESCG
T ss_pred hcC---CCCEEEEcCh
Confidence 554 2477899975
No 497
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=93.81 E-value=0.034 Score=48.00 Aligned_cols=25 Identities=16% Similarity=0.125 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
..++|+|+|.||+||||+..+|...
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCC
Confidence 4579999999999999999999754
No 498
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=93.80 E-value=0.012 Score=52.15 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~ 86 (273)
++..++|+|++|+||||+.+.|+..
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-
T ss_pred CCCEEEEECCCCCCHHHHHHHhccc
Confidence 3678999999999999999998643
No 499
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=93.76 E-value=0.026 Score=54.40 Aligned_cols=27 Identities=22% Similarity=0.400 Sum_probs=23.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLE 88 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g 88 (273)
++-.+.|+||.||||||+.+.|+..+.
T Consensus 380 ~G~~~~ivG~sGsGKSTll~~l~g~~~ 406 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIVNLLMRFYD 406 (598)
T ss_dssp TTCEEEEECCTTSSTTHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCcC
Confidence 467899999999999999999987763
No 500
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=93.73 E-value=0.026 Score=54.35 Aligned_cols=27 Identities=26% Similarity=0.346 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024067 62 RGVQWVLIGDPGVKKHVYADNLSKLLE 88 (273)
Q Consensus 62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g 88 (273)
+|-.+.|+||.||||||+.+.|+..+.
T Consensus 369 ~G~~~~ivG~sGsGKSTLl~~l~g~~~ 395 (595)
T 2yl4_A 369 SGSVTALVGPSGSGKSTVLSLLLRLYD 395 (595)
T ss_dssp TTCEEEEECCTTSSSTHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 466789999999999999999987763
Done!